Query 002364
Match_columns 930
No_of_seqs 461 out of 4038
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 23:20:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002364.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002364hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kg2_A Glutamate receptor 2; I 100.0 4.2E-97 1E-101 916.3 63.8 762 30-859 1-813 (823)
2 3o21_A Glutamate receptor 3; p 100.0 2.5E-50 8.6E-55 451.1 41.3 368 29-423 3-380 (389)
3 3om0_A Glutamate receptor, ion 100.0 5E-49 1.7E-53 442.7 37.2 370 30-424 3-382 (393)
4 4gpa_A Glutamate receptor 4; P 100.0 4.3E-48 1.5E-52 435.2 44.2 374 28-427 2-382 (389)
5 4f11_A Gamma-aminobutyric acid 100.0 2.1E-48 7.1E-53 443.8 38.3 368 26-417 9-404 (433)
6 3h6g_A Glutamate receptor, ion 100.0 2.4E-48 8.1E-53 437.6 38.1 370 29-424 2-384 (395)
7 3hsy_A Glutamate receptor 2; l 100.0 8.3E-48 2.8E-52 429.4 36.8 363 31-422 2-373 (376)
8 3saj_A Glutamate receptor 1; r 100.0 3E-47 1E-51 426.4 36.0 367 27-427 6-381 (384)
9 1jdp_A NPR-C, atrial natriuret 100.0 3E-46 1E-50 426.9 40.2 361 28-419 6-397 (441)
10 1dp4_A Atrial natriuretic pept 100.0 2.6E-46 9E-51 427.0 36.3 358 30-418 1-398 (435)
11 3qek_A NMDA glutamate receptor 100.0 6.3E-46 2.2E-50 416.0 35.7 338 28-416 2-369 (384)
12 3sm9_A Mglur3, metabotropic gl 100.0 1.3E-45 4.4E-50 422.8 37.4 366 27-415 9-462 (479)
13 2e4u_A Metabotropic glutamate 100.0 3.2E-45 1.1E-49 429.1 41.5 387 28-459 11-485 (555)
14 3ks9_A Mglur1, metabotropic gl 100.0 1.2E-44 4E-49 416.7 39.0 370 26-416 12-475 (496)
15 3mq4_A Mglur7, metabotropic gl 100.0 3.1E-45 1.1E-49 421.0 24.8 369 26-415 11-467 (481)
16 3i45_A Twin-arginine transloca 100.0 8.9E-40 3E-44 366.7 35.2 361 29-429 3-372 (387)
17 3h5l_A Putative branched-chain 100.0 9E-40 3.1E-44 370.8 28.0 351 27-414 10-394 (419)
18 3qel_B Glutamate [NMDA] recept 100.0 8.2E-40 2.8E-44 360.7 26.9 340 29-422 2-356 (364)
19 4f06_A Extracellular ligand-bi 100.0 5.2E-39 1.8E-43 357.8 33.5 340 29-408 3-352 (371)
20 3ipc_A ABC transporter, substr 100.0 2.6E-38 8.8E-43 350.8 31.4 344 30-417 1-352 (356)
21 4gnr_A ABC transporter substra 100.0 4E-38 1.4E-42 348.7 32.9 339 27-414 3-351 (353)
22 3td9_A Branched chain amino ac 100.0 4.3E-38 1.5E-42 350.3 33.0 342 28-418 13-364 (366)
23 3hut_A Putative branched-chain 100.0 1.8E-37 6.1E-42 344.3 33.7 343 30-416 3-353 (358)
24 3lkb_A Probable branched-chain 100.0 4.7E-38 1.6E-42 353.4 28.0 353 28-421 4-379 (392)
25 1usg_A Leucine-specific bindin 100.0 2.1E-37 7.3E-42 342.0 32.4 339 30-411 1-345 (346)
26 3i09_A Periplasmic branched-ch 100.0 4.7E-37 1.6E-41 343.1 34.8 333 29-406 2-341 (375)
27 3n0w_A ABC branched chain amin 100.0 6.5E-37 2.2E-41 342.4 34.0 335 29-407 4-346 (379)
28 4evq_A Putative ABC transporte 100.0 8.6E-37 2.9E-41 341.2 32.9 345 28-417 13-364 (375)
29 3eaf_A ABC transporter, substr 100.0 7.4E-37 2.5E-41 343.4 32.5 349 29-418 2-373 (391)
30 4eyg_A Twin-arginine transloca 100.0 1.5E-36 5E-41 338.4 32.2 346 28-416 3-359 (368)
31 3n0x_A Possible substrate bind 100.0 7.1E-37 2.4E-41 341.2 28.8 330 30-405 3-346 (374)
32 3lop_A Substrate binding perip 100.0 2.2E-36 7.6E-41 336.1 30.7 339 29-409 3-354 (364)
33 3sg0_A Extracellular ligand-bi 100.0 2.1E-35 7.2E-40 331.3 24.1 343 28-411 24-385 (386)
34 1pea_A Amidase operon; gene re 100.0 1.9E-33 6.6E-38 314.8 35.9 347 28-414 4-357 (385)
35 3snr_A Extracellular ligand-bi 100.0 8.9E-34 3E-38 315.1 27.8 341 28-411 4-361 (362)
36 2h4a_A YRAM (HI1655); perplasm 100.0 1.4E-27 4.8E-32 256.9 23.7 307 33-411 2-317 (325)
37 3ckm_A YRAM (HI1655), LPOA; pe 100.0 1.6E-27 5.5E-32 259.7 21.8 311 32-412 3-320 (327)
38 1yae_A Glutamate receptor, ion 99.9 1.3E-26 4.4E-31 251.2 15.8 270 462-826 10-304 (312)
39 3g3k_A Glutamate receptor, ion 99.9 1.2E-24 3.9E-29 229.1 16.9 233 463-813 2-258 (259)
40 1pb7_A N-methyl-D-aspartate re 99.9 1E-24 3.5E-29 233.3 13.1 236 465-814 41-292 (292)
41 4h5g_A Amino acid ABC superfam 99.9 7E-24 2.4E-28 220.7 16.1 221 464-808 11-237 (243)
42 2a5s_A N-methyl-D-aspartate re 99.9 1E-24 3.5E-29 232.5 9.9 241 461-813 25-283 (284)
43 4gvo_A LMO2349 protein; struct 99.9 1.2E-23 4E-28 219.0 14.2 223 463-809 7-236 (243)
44 2rc8_A Glutamate [NMDA] recept 99.9 1.3E-23 4.6E-28 225.1 13.8 226 476-813 58-293 (294)
45 3kzg_A Arginine 3RD transport 99.9 1.2E-22 3.9E-27 210.6 17.6 219 465-810 3-232 (237)
46 2v3u_A Glutamate receptor delt 99.9 3.5E-22 1.2E-26 210.8 17.5 232 463-813 1-264 (265)
47 4f3p_A Glutamine-binding perip 99.9 4.6E-22 1.6E-26 207.8 18.1 222 462-810 21-244 (249)
48 3k4u_A Binding component of AB 99.9 3.6E-22 1.2E-26 208.1 17.1 225 463-810 3-230 (245)
49 1mqi_A Glutamate receptor 2; G 99.9 3.8E-22 1.3E-26 210.3 17.3 231 464-813 3-262 (263)
50 3i6v_A Periplasmic His/Glu/Gln 99.9 2.4E-22 8.1E-27 207.5 15.0 220 464-817 4-226 (232)
51 3del_B Arginine binding protei 99.9 1E-21 3.5E-26 204.1 17.8 223 463-814 9-238 (242)
52 3hv1_A Polar amino acid ABC up 99.9 1.3E-21 4.4E-26 206.9 17.6 225 463-812 19-252 (268)
53 3kbr_A Cyclohexadienyl dehydra 99.9 6.9E-22 2.4E-26 205.0 14.3 222 463-808 13-237 (239)
54 3tql_A Arginine-binding protei 99.9 3E-21 1E-25 198.2 18.4 218 465-807 2-227 (227)
55 1ii5_A SLR1257 protein; membra 99.9 4.9E-21 1.7E-25 197.6 18.7 219 464-809 3-227 (233)
56 4eq9_A ABC transporter substra 99.9 3.7E-21 1.3E-25 200.4 16.2 227 463-814 6-241 (246)
57 3h7m_A Sensor protein; histidi 99.9 7E-21 2.4E-25 196.6 17.8 219 463-808 9-230 (234)
58 1lst_A Lysine, arginine, ornit 99.9 9.3E-21 3.2E-25 196.4 17.6 222 464-809 3-233 (239)
59 3mpk_A Virulence sensor protei 99.8 9.4E-21 3.2E-25 200.1 17.0 220 463-809 30-253 (267)
60 1wdn_A GLNBP, glutamine bindin 99.8 1.7E-20 5.9E-25 192.4 17.5 217 465-808 3-222 (226)
61 4dz1_A DALS D-alanine transpor 99.8 2.5E-20 8.5E-25 195.9 18.6 223 463-809 27-254 (259)
62 2y7i_A STM4351; arginine-bindi 99.8 3.7E-20 1.3E-24 190.5 17.8 218 463-808 4-228 (229)
63 2iee_A ORF2, probable ABC tran 99.8 1.2E-20 4.1E-25 199.7 11.2 218 463-808 19-246 (271)
64 3qax_A Probable ABC transporte 99.8 1.9E-19 6.4E-24 190.1 18.2 219 463-809 29-254 (268)
65 2pyy_A Ionotropic glutamate re 99.8 9.7E-20 3.3E-24 187.0 15.5 218 465-808 3-222 (228)
66 2q88_A EHUB, putative ABC tran 99.8 9E-20 3.1E-24 191.3 15.4 221 464-807 12-239 (257)
67 2pvu_A ARTJ; basic amino acid 99.8 2.6E-19 8.9E-24 189.6 18.5 220 463-809 40-263 (272)
68 4i62_A Amino acid ABC transpor 99.8 2E-19 6.8E-24 190.0 16.0 220 464-808 38-264 (269)
69 1xt8_A Putative amino-acid tra 99.8 3E-19 1E-23 191.2 15.3 218 464-808 43-265 (292)
70 2yjp_A Putative ABC transporte 99.8 3.3E-19 1.1E-23 190.7 15.0 218 464-808 54-276 (291)
71 2vha_A Periplasmic binding tra 99.8 5.5E-19 1.9E-23 188.7 16.5 224 463-809 15-249 (287)
72 2yln_A Putative ABC transporte 99.8 4.7E-19 1.6E-23 188.6 14.8 217 464-809 56-278 (283)
73 2v25_A Major cell-binding fact 99.7 3E-17 1E-21 172.1 11.8 215 464-807 37-258 (259)
74 3n5l_A Binding protein compone 98.7 2.2E-08 7.6E-13 106.8 10.6 215 464-807 3-242 (310)
75 2ozz_A Hypothetical protein YH 98.7 4.8E-08 1.7E-12 96.7 10.0 169 487-790 27-210 (231)
76 3p7i_A PHND, subunit of alkylp 98.7 7.3E-08 2.5E-12 103.0 12.3 216 463-807 12-251 (321)
77 2h3h_A Sugar ABC transporter, 98.4 1.8E-05 6.1E-10 84.6 22.0 208 32-259 2-216 (313)
78 3ksm_A ABC-type sugar transpor 98.4 1.4E-05 4.7E-10 83.6 19.8 209 32-259 1-221 (276)
79 2qh8_A Uncharacterized protein 98.3 2.6E-05 8.7E-10 82.9 19.9 202 29-247 6-216 (302)
80 3d02_A Putative LACI-type tran 98.3 4.8E-05 1.6E-09 80.7 21.7 210 30-258 3-222 (303)
81 3brs_A Periplasmic binding pro 98.3 4.1E-05 1.4E-09 80.7 21.0 209 31-258 5-223 (289)
82 3brq_A HTH-type transcriptiona 98.3 1.1E-05 3.9E-10 85.3 16.6 211 29-259 17-236 (296)
83 2rjo_A Twin-arginine transloca 98.3 4.9E-05 1.7E-09 81.9 21.8 212 30-257 4-229 (332)
84 3rot_A ABC sugar transporter, 98.3 2.9E-05 1E-09 82.2 19.2 203 31-251 3-215 (297)
85 1tjy_A Sugar transport protein 98.2 9.9E-05 3.4E-09 78.9 22.4 206 33-259 5-222 (316)
86 2qu7_A Putative transcriptiona 98.2 8.3E-06 2.8E-10 86.0 13.7 207 29-257 6-221 (288)
87 1dbq_A Purine repressor; trans 98.2 4.8E-05 1.6E-09 80.1 18.6 210 30-258 6-222 (289)
88 2x7x_A Sensor protein; transfe 98.2 9.3E-05 3.2E-09 79.5 20.7 210 30-259 5-222 (325)
89 3lkv_A Uncharacterized conserv 98.2 9.4E-05 3.2E-09 78.3 20.3 191 28-234 5-204 (302)
90 2fn9_A Ribose ABC transporter, 98.1 0.00012 4E-09 77.2 20.4 197 32-248 3-215 (290)
91 3o1i_D Periplasmic protein TOR 98.1 5E-05 1.7E-09 80.6 17.5 205 30-249 4-218 (304)
92 3l49_A ABC sugar (ribose) tran 98.1 7.7E-05 2.6E-09 78.6 18.8 208 30-258 4-223 (291)
93 3gbv_A Putative LACI-family tr 98.1 8.1E-05 2.8E-09 78.9 18.8 211 29-259 6-232 (304)
94 3c3k_A Alanine racemase; struc 98.1 0.00015 5E-09 76.2 19.8 201 30-254 7-214 (285)
95 2fvy_A D-galactose-binding per 98.1 0.00018 6.2E-09 76.4 20.8 204 32-247 3-226 (309)
96 2iks_A DNA-binding transcripti 98.1 0.00014 4.9E-09 76.6 19.5 210 29-259 18-233 (293)
97 3g1w_A Sugar ABC transporter; 98.1 0.00029 9.9E-09 74.7 22.0 211 31-259 4-221 (305)
98 2ioy_A Periplasmic sugar-bindi 98.1 0.00031 1.1E-08 73.6 22.0 205 33-259 3-216 (283)
99 3h75_A Periplasmic sugar-bindi 98.1 0.00027 9.1E-09 76.7 22.0 215 31-259 3-241 (350)
100 3lft_A Uncharacterized protein 98.1 0.00034 1.2E-08 73.8 22.2 200 31-248 2-210 (295)
101 3l6u_A ABC-type sugar transpor 98.1 0.00024 8.1E-09 74.9 20.6 208 29-258 6-227 (293)
102 2vk2_A YTFQ, ABC transporter p 98.0 0.00016 5.3E-09 76.9 19.0 211 31-258 2-226 (306)
103 2h0a_A TTHA0807, transcription 98.0 2.6E-05 8.9E-10 81.6 12.6 202 33-256 1-212 (276)
104 2fep_A Catabolite control prot 98.0 0.00012 4.2E-09 77.0 17.4 211 28-258 13-230 (289)
105 3d8u_A PURR transcriptional re 98.0 0.00016 5.6E-09 75.3 18.2 207 31-257 3-215 (275)
106 8abp_A L-arabinose-binding pro 98.0 0.00041 1.4E-08 73.5 21.0 215 31-260 2-233 (306)
107 3dbi_A Sugar-binding transcrip 98.0 0.00013 4.3E-09 78.9 16.8 211 30-259 60-278 (338)
108 3o74_A Fructose transport syst 98.0 0.0003 1E-08 73.1 19.2 207 32-259 3-215 (272)
109 2rgy_A Transcriptional regulat 98.0 9.1E-05 3.1E-09 78.0 15.1 209 30-258 7-224 (290)
110 2o20_A Catabolite control prot 98.0 0.00015 5.2E-09 78.0 17.0 208 30-257 62-273 (332)
111 3clk_A Transcription regulator 97.9 5.3E-05 1.8E-09 79.9 13.0 204 29-252 6-213 (290)
112 2hsg_A Glucose-resistance amyl 97.9 0.0001 3.5E-09 79.4 15.5 210 29-258 58-274 (332)
113 1jx6_A LUXP protein; protein-l 97.9 0.00034 1.2E-08 75.6 19.7 208 28-248 40-258 (342)
114 3k4h_A Putative transcriptiona 97.9 0.00016 5.4E-09 76.2 16.2 211 29-258 6-227 (292)
115 3bbl_A Regulatory protein of L 97.9 0.00011 3.8E-09 77.2 14.3 209 31-259 4-224 (287)
116 1qpz_A PURA, protein (purine n 97.8 0.00057 2E-08 73.7 19.0 209 30-257 57-272 (340)
117 3gyb_A Transcriptional regulat 97.8 0.00011 3.9E-09 76.8 12.8 205 30-259 4-212 (280)
118 2x26_A Periplasmic aliphatic s 97.8 0.00012 4.2E-09 77.8 13.2 121 681-808 96-232 (308)
119 3ctp_A Periplasmic binding pro 97.8 0.00018 6.1E-09 77.4 14.2 200 29-254 58-261 (330)
120 3hcw_A Maltose operon transcri 97.8 0.0017 5.9E-08 68.3 20.9 210 29-259 5-228 (295)
121 3m9w_A D-xylose-binding peripl 97.8 0.0014 4.6E-08 69.8 20.2 200 31-249 2-213 (313)
122 3egc_A Putative ribose operon 97.7 0.0002 6.9E-09 75.4 13.3 211 29-259 6-222 (291)
123 3jy6_A Transcriptional regulat 97.7 0.0012 4.2E-08 68.6 18.8 206 29-258 5-216 (276)
124 3gv0_A Transcriptional regulat 97.7 0.001 3.6E-08 69.7 18.2 204 29-253 6-217 (288)
125 3uif_A Sulfonate ABC transport 97.7 0.00027 9.3E-09 76.6 13.2 108 680-793 109-228 (348)
126 3k9c_A Transcriptional regulat 97.7 0.0016 5.6E-08 68.2 18.7 207 29-258 10-220 (289)
127 2dri_A D-ribose-binding protei 97.7 0.0048 1.6E-07 63.9 22.1 204 33-258 3-214 (271)
128 3kjx_A Transcriptional regulat 97.6 0.00089 3E-08 72.3 16.8 208 29-256 66-279 (344)
129 3qk7_A Transcriptional regulat 97.6 0.00059 2E-08 71.9 14.8 208 30-259 5-223 (294)
130 3g85_A Transcriptional regulat 97.6 0.00037 1.3E-08 73.2 13.0 205 28-254 8-218 (289)
131 3tb6_A Arabinose metabolism tr 97.6 0.00075 2.6E-08 71.1 15.4 207 31-256 15-233 (298)
132 3ksx_A Nitrate transport prote 97.6 0.00069 2.4E-08 72.5 15.1 93 680-779 121-219 (324)
133 3bil_A Probable LACI-family tr 97.6 0.0017 5.8E-08 70.2 18.3 208 30-259 65-277 (348)
134 3kke_A LACI family transcripti 97.6 0.00096 3.3E-08 70.6 15.9 208 29-258 13-232 (303)
135 3un6_A Hypothetical protein sa 97.6 0.00013 4.4E-09 78.9 8.8 122 680-808 143-283 (341)
136 3e3m_A Transcriptional regulat 97.5 0.0049 1.7E-07 66.7 20.4 205 30-254 69-280 (355)
137 3cs3_A Sugar-binding transcrip 97.5 0.0044 1.5E-07 64.4 19.3 199 29-257 6-210 (277)
138 3e61_A Putative transcriptiona 97.5 0.0015 5.1E-08 68.0 15.0 199 29-256 6-209 (277)
139 1gud_A ALBP, D-allose-binding 97.5 0.012 4.2E-07 61.4 22.2 211 33-259 3-227 (288)
140 1byk_A Protein (trehalose oper 97.4 0.0051 1.7E-07 63.0 18.2 197 33-258 4-204 (255)
141 3hs3_A Ribose operon repressor 97.4 0.003 1E-07 65.7 16.5 195 29-254 8-208 (277)
142 3uug_A Multiple sugar-binding 97.4 0.0044 1.5E-07 66.3 17.8 205 31-252 3-232 (330)
143 3huu_A Transcription regulator 97.4 0.0028 9.6E-08 67.0 16.1 206 29-259 20-238 (305)
144 3h5o_A Transcriptional regulat 97.4 0.0065 2.2E-07 65.3 19.0 203 30-254 61-269 (339)
145 4fe7_A Xylose operon regulator 97.4 0.0055 1.9E-07 67.9 18.9 211 28-259 22-239 (412)
146 3jvd_A Transcriptional regulat 97.4 0.0067 2.3E-07 65.0 18.9 200 30-259 63-267 (333)
147 3ix1_A N-formyl-4-amino-5-amin 97.3 0.0008 2.8E-08 71.2 11.1 79 487-573 14-96 (302)
148 2fqx_A Membrane lipoprotein TM 97.3 0.016 5.6E-07 61.4 20.9 206 30-257 3-220 (318)
149 2f5x_A BUGD; periplasmic bindi 97.3 0.0018 6.2E-08 68.2 12.9 122 680-806 121-275 (312)
150 3qsl_A Putative exported prote 97.3 0.0015 5.1E-08 70.5 12.7 137 502-757 59-205 (346)
151 3s99_A Basic membrane lipoprot 97.2 0.022 7.7E-07 61.0 20.7 201 26-248 21-230 (356)
152 1jye_A Lactose operon represso 97.2 0.016 5.5E-07 62.4 19.7 201 30-254 60-268 (349)
153 2qpq_A Protein BUG27; alpha/be 97.2 0.0028 9.4E-08 66.5 13.0 121 680-806 112-266 (301)
154 3miz_A Putative transcriptiona 97.1 0.00075 2.6E-08 71.4 7.6 203 29-252 11-225 (301)
155 2hqb_A Transcriptional activat 97.0 0.089 3E-06 55.0 22.7 195 30-247 4-204 (296)
156 2dvz_A BUGE, putative exported 97.0 0.0051 1.8E-07 64.8 12.7 122 680-806 125-279 (314)
157 2k1e_A Water soluble analogue 96.7 0.0018 6.2E-08 55.6 5.1 77 597-677 19-97 (103)
158 3h5t_A Transcriptional regulat 96.6 0.02 6.9E-07 62.1 14.0 204 30-252 67-296 (366)
159 4ddd_A Immunogenic protein; ss 96.4 0.0077 2.6E-07 64.2 9.3 62 680-747 136-203 (327)
160 3qi7_A Putative transcriptiona 96.4 0.076 2.6E-06 56.2 16.5 220 30-251 11-252 (371)
161 2x7q_A Ca3427, possible thiami 96.4 0.014 4.8E-07 62.1 11.0 108 680-796 110-236 (321)
162 3jv9_A OXYR, transcriptional r 96.3 0.076 2.6E-06 52.1 15.4 194 465-795 4-208 (219)
163 2ih3_C Voltage-gated potassium 96.2 0.0077 2.6E-07 53.4 6.3 74 599-676 42-117 (122)
164 3eff_K Voltage-gated potassium 95.9 0.015 5.1E-07 53.0 7.2 72 600-675 22-95 (139)
165 3ho7_A OXYR; beta-alpha-barrel 95.9 0.073 2.5E-06 52.8 13.2 84 464-573 10-93 (232)
166 4ab5_A Transcriptional regulat 95.9 0.094 3.2E-06 51.5 13.7 84 464-573 7-90 (222)
167 2a9h_A Voltage-gated potassium 95.8 0.013 4.6E-07 54.1 6.5 75 599-677 65-141 (155)
168 3oxn_A Putative transcriptiona 95.8 0.15 5.3E-06 50.9 15.3 84 464-573 18-101 (241)
169 3ixl_A Amdase, arylmalonate de 95.7 0.15 5.3E-06 51.0 14.4 129 87-243 57-200 (240)
170 2g29_A Nitrate transport prote 95.7 0.04 1.4E-06 60.9 10.8 103 686-795 151-272 (417)
171 1zbm_A Hypothetical protein AF 95.4 0.046 1.6E-06 56.6 9.5 100 686-797 99-211 (280)
172 4h33_A LMO2059 protein; bilaye 95.0 0.051 1.7E-06 49.1 7.2 56 621-676 42-99 (137)
173 3fzv_A Probable transcriptiona 94.8 0.41 1.4E-05 49.8 15.0 84 464-573 94-178 (306)
174 3pjs_K KCSA, voltage-gated pot 93.9 0.0087 3E-07 56.4 -0.5 58 619-676 64-123 (166)
175 2ql3_A Probable transcriptiona 93.9 1.5 5E-05 42.2 15.9 84 464-573 4-87 (209)
176 1us5_A Putative GLUR0 ligand b 93.8 0.28 9.4E-06 51.6 11.1 61 680-746 121-187 (314)
177 2y7p_A LYSR-type regulatory pr 93.8 0.57 1.9E-05 45.9 12.8 84 464-573 7-90 (218)
178 1i6a_A OXYR, hydrogen peroxide 93.8 0.15 5.2E-06 50.1 8.6 84 464-573 4-87 (219)
179 3ldc_A Calcium-gated potassium 93.8 0.12 4.1E-06 41.9 6.2 52 622-673 28-81 (82)
180 2fyi_A HTH-type transcriptiona 93.5 1.3 4.5E-05 43.5 15.0 85 464-573 13-97 (228)
181 3ouf_A Potassium channel prote 93.2 0.098 3.4E-06 44.0 4.9 58 622-679 32-91 (97)
182 4gx0_A TRKA domain protein; me 93.1 0.24 8.1E-06 57.1 9.8 120 622-748 51-180 (565)
183 2zzv_A ABC transporter, solute 93.1 0.57 2E-05 50.3 12.1 59 680-750 164-222 (361)
184 2hxr_A HTH-type transcriptiona 92.8 3.9 0.00013 40.2 17.4 83 465-573 30-112 (238)
185 1p7b_A Integral membrane chann 92.8 0.13 4.4E-06 54.0 6.2 62 617-678 91-154 (333)
186 2q67_A Potassium channel prote 92.5 0.18 6.3E-06 43.7 5.9 55 622-676 49-105 (114)
187 1al3_A Cys regulon transcripti 92.4 1.6 5.4E-05 45.8 14.4 206 465-808 93-305 (324)
188 1lnq_A MTHK channels, potassiu 92.3 0.15 5.2E-06 54.3 6.3 124 622-753 45-170 (336)
189 1xl4_A Inward rectifier potass 92.3 0.2 6.9E-06 51.8 6.8 61 617-677 77-139 (301)
190 2esn_A Probable transcriptiona 92.0 1.9 6.4E-05 44.8 14.4 84 464-573 100-186 (310)
191 1atg_A MODA, periplasmic molyb 92.0 0.67 2.3E-05 45.6 10.3 71 494-573 14-90 (231)
192 4esw_A Pyrimidine biosynthesis 91.8 0.57 2E-05 49.9 10.0 66 680-752 101-169 (342)
193 2pfy_A Putative exported prote 91.8 1.4 4.7E-05 45.9 12.7 87 680-779 129-216 (301)
194 2xed_A Putative maleate isomer 91.7 1.8 6E-05 44.2 13.1 127 88-242 82-227 (273)
195 2pfz_A Putative exported prote 91.6 1.5 5.1E-05 45.6 12.8 56 680-747 128-183 (301)
196 3fxq_A LYSR type regulator of 91.5 1.6 5.5E-05 45.2 13.1 85 465-573 92-176 (305)
197 3vou_A ION transport 2 domain 91.4 0.37 1.3E-05 44.2 6.9 54 622-675 52-107 (148)
198 1ixc_A CBNR, LYSR-type regulat 91.3 3.7 0.00013 42.0 15.5 84 464-573 90-173 (294)
199 1orq_C Potassium channel; volt 90.7 0.33 1.1E-05 48.1 6.4 73 599-675 146-220 (223)
200 2h9b_A HTH-type transcriptiona 90.2 8.2 0.00028 39.9 17.2 82 466-573 91-172 (312)
201 2h98_A HTH-type transcriptiona 90.1 11 0.00036 39.1 17.9 82 466-573 91-172 (313)
202 2hzl_A Trap-T family sorbitol/ 89.5 1.3 4.4E-05 47.6 10.3 87 680-779 163-252 (365)
203 2i49_A Bicarbonate transporter 89.5 1 3.4E-05 49.6 9.5 106 685-795 153-280 (429)
204 1sw5_A Osmoprotection protein 88.7 1.3 4.5E-05 45.3 9.3 104 681-794 124-238 (275)
205 3r26_A Molybdate-binding perip 88.2 4.5 0.00015 40.2 12.6 70 495-573 22-97 (237)
206 2qks_A KIR3.1-prokaryotic KIR 87.8 0.83 2.8E-05 47.6 6.9 56 622-677 78-135 (321)
207 1uth_A LYSR-type regulatory pr 87.7 4.9 0.00017 41.7 13.2 84 464-573 104-187 (315)
208 3s99_A Basic membrane lipoprot 87.2 2 6.7E-05 45.8 9.6 89 32-129 150-238 (356)
209 1twy_A ABC transporter, peripl 87.0 15 0.00052 37.0 16.4 71 494-573 42-113 (290)
210 3beh_A MLL3241 protein; transm 86.1 0.49 1.7E-05 50.7 4.2 73 599-675 142-216 (355)
211 2de3_A Dibenzothiophene desulf 85.5 3.6 0.00012 44.0 10.8 76 727-808 210-299 (365)
212 3gzg_A Molybdate-binding perip 85.2 5.6 0.00019 39.9 11.4 70 495-573 38-113 (253)
213 2dgd_A 223AA long hypothetical 84.9 6.6 0.00023 38.5 11.6 88 152-242 96-190 (223)
214 3kos_A HTH-type transcriptiona 84.5 6.2 0.00021 37.9 11.3 106 682-794 95-204 (219)
215 2fqx_A Membrane lipoprotein TM 84.1 13 0.00043 38.8 14.1 126 33-165 131-264 (318)
216 2r9r_B Paddle chimera voltage 83.0 1.1 3.9E-05 50.3 5.5 57 619-675 372-430 (514)
217 3hhf_B Transcriptional regulat 82.6 3.2 0.00011 39.8 8.2 81 464-573 6-86 (213)
218 2eq5_A 228AA long hypothetical 80.8 12 0.00041 36.7 11.7 115 89-235 68-186 (228)
219 2l82_A Designed protein OR32; 79.3 14 0.00048 30.2 9.1 97 141-248 4-104 (162)
220 2hpg_A ABC transporter, peripl 79.2 1 3.4E-05 47.5 3.3 88 680-779 148-236 (327)
221 2hqb_A Transcriptional activat 78.8 19 0.00067 36.8 13.1 121 33-166 128-248 (296)
222 3onm_A Transcriptional regulat 78.7 41 0.0014 32.5 15.1 82 464-573 26-107 (238)
223 2xwv_A Sialic acid-binding per 78.3 13 0.00043 38.7 11.4 60 680-750 133-192 (312)
224 3bfj_A 1,3-propanediol oxidore 77.5 7.5 0.00026 41.9 9.6 100 139-243 11-114 (387)
225 3k6v_A Solute-binding protein 77.3 43 0.0015 35.3 15.2 69 496-573 59-133 (354)
226 3cij_A UPF0100 protein AF_0094 77.3 53 0.0018 33.3 16.0 70 495-573 20-95 (295)
227 1nh8_A ATP phosphoribosyltrans 77.0 8.9 0.0003 39.0 9.2 102 681-794 120-224 (304)
228 3ox4_A Alcohol dehydrogenase 2 77.0 4.6 0.00016 43.5 7.7 91 152-244 19-111 (383)
229 3muq_A Uncharacterized conserv 76.2 27 0.00094 34.3 12.5 74 491-573 18-94 (237)
230 1xs5_A 29 kDa protein, membran 74.9 52 0.0018 32.4 14.3 36 498-541 21-56 (241)
231 3ukm_A Potassium channel subfa 74.9 2.9 0.0001 42.3 5.0 67 622-688 201-276 (280)
232 3szp_A Transcriptional regulat 74.9 2.3 8E-05 43.3 4.6 73 717-795 213-287 (291)
233 2rin_A Putative glycine betain 72.6 5.6 0.00019 41.1 6.8 39 496-543 24-62 (298)
234 1r9l_A Glycine betaine-binding 71.6 9.2 0.00032 39.7 8.2 40 495-542 24-63 (309)
235 2czl_A Hypothetical protein TT 71.3 5 0.00017 40.7 6.0 59 685-751 91-150 (272)
236 2zsk_A PH1733, 226AA long hypo 70.1 19 0.00064 35.2 9.7 78 90-196 67-144 (226)
237 3cfx_A UPF0100 protein MA_0280 70.0 97 0.0033 31.4 15.8 70 495-573 20-95 (296)
238 1jfl_A Aspartate racemase; alp 70.0 12 0.00042 36.6 8.4 80 87-195 65-144 (228)
239 3cfz_A UPF0100 protein MJ1186; 69.4 69 0.0024 32.4 14.4 71 494-573 19-95 (292)
240 1vlj_A NADH-dependent butanol 69.3 14 0.00049 39.9 9.4 88 154-243 33-123 (407)
241 1rrm_A Lactaldehyde reductase; 68.5 8.3 0.00028 41.5 7.2 101 139-244 9-111 (386)
242 3hn0_A Nitrate transport prote 67.6 9.8 0.00034 38.8 7.3 61 692-757 96-161 (283)
243 2q5c_A NTRC family transcripti 67.0 87 0.003 29.6 15.7 159 31-249 4-162 (196)
244 3mz1_A Putative transcriptiona 65.3 21 0.00072 36.0 9.5 80 464-572 87-166 (300)
245 1o2d_A Alcohol dehydrogenase, 65.0 19 0.00067 38.3 9.2 88 153-243 30-120 (371)
246 3uhj_A Probable glycerol dehyd 64.8 10 0.00035 40.7 6.9 82 154-241 43-126 (387)
247 3fd3_A Chromosome replication 63.7 33 0.0011 32.1 10.0 68 492-572 15-82 (208)
248 3cvg_A Putative metal binding 63.6 74 0.0025 32.3 13.2 73 492-573 33-115 (294)
249 3l6g_A Betaine ABC transporter 63.4 16 0.00053 36.7 7.7 42 493-543 16-57 (256)
250 2qsx_A Putative transcriptiona 63.3 60 0.002 30.9 11.9 70 719-794 140-211 (218)
251 1h3d_A ATP-phosphoribosyltrans 62.6 43 0.0015 34.0 10.6 102 681-795 115-219 (299)
252 4edp_A ABC transporter, substr 62.1 80 0.0027 32.6 13.6 81 721-805 216-298 (351)
253 3m9w_A D-xylose-binding peripl 61.8 27 0.00093 35.8 9.6 79 165-248 3-84 (313)
254 2fp4_A Succinyl-COA ligase [GD 61.1 70 0.0024 32.8 12.2 144 81-245 80-234 (305)
255 2dwu_A Glutamate racemase; iso 59.8 65 0.0022 32.4 11.7 121 85-233 58-190 (276)
256 4dik_A Flavoprotein; TM0755, e 59.6 38 0.0013 36.6 10.3 93 164-263 265-365 (410)
257 3tmg_A Glycine betaine, L-prol 58.9 43 0.0015 33.9 10.2 58 463-543 14-71 (280)
258 3sya_A G protein-activated inw 58.4 13 0.00046 38.6 6.1 59 621-679 90-152 (340)
259 1mkz_A Molybdenum cofactor bio 58.2 47 0.0016 30.7 9.4 65 164-232 10-78 (172)
260 2gzm_A Glutamate racemase; enz 58.2 34 0.0011 34.4 9.1 40 86-125 55-94 (267)
261 3g1w_A Sugar ABC transporter; 57.6 23 0.00079 36.2 8.1 80 165-248 5-87 (305)
262 3um7_A Potassium channel subfa 56.9 14 0.00049 37.9 6.0 54 622-675 224-285 (309)
263 3um7_A Potassium channel subfa 56.8 6.3 0.00022 40.5 3.3 53 622-674 115-169 (309)
264 3h75_A Periplasmic sugar-bindi 56.8 28 0.00096 36.5 8.8 80 164-248 3-87 (350)
265 2pju_A Propionate catabolism o 56.1 1.3E+02 0.0043 29.2 12.4 134 72-249 40-174 (225)
266 3dbi_A Sugar-binding transcrip 55.6 41 0.0014 34.9 9.8 85 159-248 56-144 (338)
267 1jq5_A Glycerol dehydrogenase; 55.3 42 0.0014 35.6 9.8 108 139-259 10-119 (370)
268 2l69_A Rossmann 2X3 fold prote 54.3 77 0.0026 25.1 8.2 48 146-196 58-105 (134)
269 3s81_A Putative aspartate race 54.1 21 0.00072 35.9 6.7 39 86-125 89-127 (268)
270 3ce9_A Glycerol dehydrogenase; 53.6 45 0.0015 35.1 9.6 109 139-260 12-122 (354)
271 1ryo_A Serotransferrin; iron t 53.5 1.3E+02 0.0043 31.2 12.6 41 494-542 19-62 (327)
272 3isp_A HTH-type transcriptiona 53.5 64 0.0022 32.6 10.7 54 509-573 120-173 (303)
273 2oho_A Glutamate racemase; iso 52.4 41 0.0014 33.9 8.6 38 88-125 66-103 (273)
274 2vd3_A ATP phosphoribosyltrans 51.6 22 0.00075 36.0 6.2 101 681-794 105-208 (289)
275 3gbv_A Putative LACI-family tr 51.5 38 0.0013 34.3 8.6 84 163-248 7-95 (304)
276 3l49_A ABC sugar (ribose) tran 51.5 49 0.0017 33.2 9.4 79 165-248 6-87 (291)
277 3lr1_A Tungstate ABC transport 51.2 10 0.00036 37.3 3.8 75 491-574 18-95 (236)
278 3ist_A Glutamate racemase; str 49.4 53 0.0018 33.0 8.7 40 86-125 57-96 (269)
279 8abp_A L-arabinose-binding pro 48.8 56 0.0019 33.1 9.3 78 165-248 3-83 (306)
280 3hl0_A Maleylacetate reductase 47.9 27 0.00092 36.8 6.6 97 153-260 23-121 (353)
281 1zuw_A Glutamate racemase 1; ( 47.9 1.4E+02 0.0047 29.9 11.7 130 84-242 53-197 (272)
282 3dmy_A Protein FDRA; predicted 47.4 2.5E+02 0.0085 30.7 14.3 144 82-247 46-198 (480)
283 3d02_A Putative LACI-type tran 47.0 49 0.0017 33.5 8.5 80 165-248 5-87 (303)
284 1tjy_A Sugar transport protein 46.3 29 0.001 35.7 6.6 80 165-248 4-86 (316)
285 1p99_A Hypothetical protein PG 46.3 1E+02 0.0036 31.3 10.6 36 498-541 56-91 (295)
286 3spc_A Inward-rectifier K+ cha 45.9 30 0.001 36.0 6.4 59 621-679 93-155 (343)
287 3jy6_A Transcriptional regulat 45.8 48 0.0017 33.1 8.1 78 164-248 7-86 (276)
288 2jfn_A Glutamate racemase; cel 44.7 73 0.0025 32.3 9.1 40 86-125 73-113 (285)
289 3uug_A Multiple sugar-binding 44.3 58 0.002 33.5 8.7 79 165-248 4-85 (330)
290 3k9c_A Transcriptional regulat 44.3 1.5E+02 0.0052 29.5 11.7 117 33-160 128-252 (289)
291 3l6u_A ABC-type sugar transpor 44.0 46 0.0016 33.5 7.7 81 163-248 7-90 (293)
292 2xxp_A CPS2A; replication, pep 43.9 16 0.00055 39.2 4.1 66 680-754 26-97 (398)
293 3jzd_A Iron-containing alcohol 43.6 30 0.001 36.5 6.2 97 153-260 25-123 (358)
294 3brq_A HTH-type transcriptiona 43.6 81 0.0028 31.6 9.5 84 159-248 14-102 (296)
295 3tb6_A Arabinose metabolism tr 43.4 62 0.0021 32.5 8.6 79 165-248 16-100 (298)
296 3p6l_A Sugar phosphate isomera 43.2 1.1E+02 0.0038 30.1 10.3 94 152-248 24-129 (262)
297 3qvl_A Putative hydantoin race 42.9 2.5E+02 0.0085 27.5 13.9 84 32-125 2-96 (245)
298 1i4n_A Indole-3-glycerol phosp 42.5 88 0.003 30.9 8.9 86 153-249 64-152 (251)
299 3o74_A Fructose transport syst 42.5 29 0.00099 34.6 5.7 79 165-248 3-83 (272)
300 3rot_A ABC sugar transporter, 42.1 42 0.0014 34.0 7.0 81 165-248 4-87 (297)
301 2hxw_A Major antigenic peptide 42.0 78 0.0027 30.5 8.8 40 495-544 16-55 (237)
302 3ukm_A Potassium channel subfa 41.9 16 0.00054 36.9 3.4 54 622-675 93-148 (280)
303 2fn9_A Ribose ABC transporter, 41.7 71 0.0024 32.0 8.7 79 165-248 3-84 (290)
304 1b73_A Glutamate racemase; iso 41.6 60 0.0021 32.2 7.8 121 85-234 51-181 (254)
305 4euo_A ABC transporter, substr 41.1 3E+02 0.01 27.8 15.2 83 718-805 176-258 (320)
306 1ccw_A Protein (glutamate muta 41.1 1.6E+02 0.0053 25.8 9.6 85 166-259 5-93 (137)
307 1jye_A Lactose operon represso 41.0 77 0.0026 33.0 9.0 65 163-231 60-126 (349)
308 3ojc_A Putative aspartate/glut 41.0 21 0.00072 35.1 4.1 81 87-196 67-148 (231)
309 1y5e_A Molybdenum cofactor bio 40.2 1.1E+02 0.0037 28.1 8.8 67 162-232 11-81 (169)
310 3huu_A Transcription regulator 40.2 42 0.0014 34.2 6.6 86 157-248 15-107 (305)
311 3tsm_A IGPS, indole-3-glycerol 39.7 1.7E+02 0.0059 29.2 10.6 87 153-249 82-171 (272)
312 2jfq_A Glutamate racemase; cel 39.6 1.9E+02 0.0064 29.2 11.3 40 86-125 74-113 (286)
313 3h5o_A Transcriptional regulat 39.6 67 0.0023 33.3 8.2 84 159-248 57-142 (339)
314 3r7f_A Aspartate carbamoyltran 39.5 1.2E+02 0.0042 30.8 9.7 134 32-198 37-179 (304)
315 3ksm_A ABC-type sugar transpor 39.4 48 0.0016 32.9 6.9 80 166-248 2-85 (276)
316 3k4h_A Putative transcriptiona 39.3 56 0.0019 32.8 7.4 80 163-248 7-93 (292)
317 3fni_A Putative diflavin flavo 38.3 1.6E+02 0.0054 26.5 9.5 85 165-258 5-95 (159)
318 2pjk_A 178AA long hypothetical 38.2 1.1E+02 0.0036 28.5 8.4 67 162-232 13-90 (178)
319 1jx6_A LUXP protein; protein-l 38.2 74 0.0025 32.9 8.3 82 165-248 44-129 (342)
320 3rfq_A Pterin-4-alpha-carbinol 38.1 92 0.0032 29.1 7.9 65 164-232 30-98 (185)
321 2is8_A Molybdopterin biosynthe 37.2 1.1E+02 0.0036 28.0 8.1 63 166-232 3-71 (164)
322 3e3m_A Transcriptional regulat 37.2 1E+02 0.0035 32.1 9.3 84 159-248 65-150 (355)
323 2h3h_A Sugar ABC transporter, 37.1 71 0.0024 32.6 7.9 79 166-248 3-83 (313)
324 3rvy_A ION transport protein; 36.9 25 0.00084 35.8 4.1 58 620-677 178-243 (285)
325 2b4l_A Glycine betaine-binding 36.9 44 0.0015 33.6 5.9 58 463-543 163-220 (268)
326 2vvt_A Glutamate racemase; iso 36.3 1.1E+02 0.0038 30.9 9.0 41 85-125 75-115 (290)
327 2fep_A Catabolite control prot 36.2 1E+02 0.0034 31.0 8.7 78 165-248 17-96 (289)
328 2yxb_A Coenzyme B12-dependent 36.1 2.1E+02 0.0073 25.8 10.0 85 165-258 19-107 (161)
329 3cg1_A UPF0100 protein PF0080; 35.8 3.4E+02 0.012 27.0 14.5 71 496-573 21-100 (296)
330 3hhg_A Transcriptional regulat 35.5 34 0.0012 34.7 5.0 80 464-572 92-171 (306)
331 4ef1_A Pheromone COB1/lipoprot 35.4 3.3E+02 0.011 26.7 11.7 36 498-541 22-57 (246)
332 2klu_A T-cell surface glycopro 35.4 98 0.0034 23.0 5.7 14 837-850 13-26 (70)
333 2iks_A DNA-binding transcripti 35.0 56 0.0019 32.9 6.6 85 159-248 15-101 (293)
334 3lmz_A Putative sugar isomeras 34.9 1.3E+02 0.0045 29.5 9.2 94 152-248 32-127 (257)
335 3uhf_A Glutamate racemase; str 34.5 2.2E+02 0.0074 28.5 10.5 58 67-125 48-115 (274)
336 3hs3_A Ribose operon repressor 33.8 92 0.0032 31.0 8.0 70 157-231 3-75 (277)
337 3i42_A Response regulator rece 33.8 2E+02 0.0069 23.8 9.3 56 180-246 15-72 (127)
338 3bil_A Probable LACI-family tr 33.6 82 0.0028 32.8 7.8 78 165-248 67-146 (348)
339 1oj7_A Hypothetical oxidoreduc 33.1 62 0.0021 34.8 6.7 83 155-243 43-128 (408)
340 2fvy_A D-galactose-binding per 32.9 1.2E+02 0.0043 30.4 8.9 79 165-248 3-85 (309)
341 1ta9_A Glycerol dehydrogenase; 32.9 65 0.0022 35.1 6.8 96 154-259 81-178 (450)
342 3gyb_A Transcriptional regulat 32.8 87 0.003 31.1 7.6 115 33-159 120-242 (280)
343 3kke_A LACI family transcripti 32.6 62 0.0021 32.9 6.5 87 156-248 7-95 (303)
344 2l2t_A Receptor tyrosine-prote 32.5 1.1E+02 0.0039 20.9 5.3 7 851-857 31-37 (44)
345 2o20_A Catabolite control prot 32.4 1.2E+02 0.004 31.2 8.7 81 162-248 61-143 (332)
346 3iwt_A 178AA long hypothetical 31.5 1.1E+02 0.0037 28.3 7.3 63 166-232 17-90 (178)
347 2csu_A 457AA long hypothetical 31.1 1.1E+02 0.0039 33.3 8.5 144 81-247 73-227 (457)
348 1duv_G Octase-1, ornithine tra 30.9 4.6E+02 0.016 27.0 14.9 134 31-199 44-187 (333)
349 3lte_A Response regulator; str 30.9 2E+02 0.0069 24.0 8.8 57 180-247 18-76 (132)
350 2g2c_A Putative molybdenum cof 30.7 1E+02 0.0036 28.1 7.0 64 165-232 6-78 (167)
351 3qk7_A Transcriptional regulat 30.7 1E+02 0.0035 30.9 7.8 78 164-248 6-89 (294)
352 2vpn_A Periplasmic substrate b 30.5 63 0.0021 33.3 6.0 88 680-779 130-218 (316)
353 3t6k_A Response regulator rece 30.5 2.2E+02 0.0075 24.2 9.0 57 180-247 16-74 (136)
354 3okf_A 3-dehydroquinate syntha 30.3 2.1E+02 0.0073 30.3 10.1 112 139-259 41-158 (390)
355 4es6_A Uroporphyrinogen-III sy 30.2 49 0.0017 32.8 5.0 88 149-245 113-206 (254)
356 3gv0_A Transcriptional regulat 29.6 1E+02 0.0036 30.7 7.6 80 163-248 7-90 (288)
357 2vk2_A YTFQ, ABC transporter p 29.3 1E+02 0.0035 31.2 7.4 79 165-248 3-84 (306)
358 3egc_A Putative ribose operon 29.2 54 0.0019 33.0 5.2 80 163-248 7-88 (291)
359 2ioy_A Periplasmic sugar-bindi 28.9 1.4E+02 0.0048 29.6 8.4 79 165-248 2-83 (283)
360 3grf_A Ornithine carbamoyltran 28.7 4.9E+02 0.017 26.7 13.3 131 32-198 45-192 (328)
361 1y80_A Predicted cobalamin bin 28.6 2.5E+02 0.0086 26.5 9.7 87 165-259 89-179 (210)
362 2nr1_A NR1 M2, M2; receptor, s 28.2 19 0.00066 21.4 0.8 17 622-638 8-24 (27)
363 3kjx_A Transcriptional regulat 28.0 1.6E+02 0.0054 30.3 8.8 78 165-248 69-148 (344)
364 3e61_A Putative transcriptiona 27.9 91 0.0031 30.9 6.7 77 164-248 8-87 (277)
365 3mwb_A Prephenate dehydratase; 27.8 1.1E+02 0.0039 31.3 7.1 84 693-781 7-101 (313)
366 4a29_A Engineered retro-aldol 27.4 1.8E+02 0.0063 28.6 8.1 84 155-249 69-155 (258)
367 3dnf_A ISPH, LYTB, 4-hydroxy-3 27.3 1.1E+02 0.0036 31.1 6.6 52 73-124 186-239 (297)
368 2qh8_A Uncharacterized protein 26.9 2.5E+02 0.0086 28.1 10.0 111 32-159 141-254 (302)
369 2rgy_A Transcriptional regulat 26.9 1.1E+02 0.0039 30.5 7.3 79 164-248 8-91 (290)
370 3d8u_A PURR transcriptional re 26.9 1.1E+02 0.0038 30.2 7.1 78 165-248 4-83 (275)
371 3out_A Glutamate racemase; str 26.8 1.1E+02 0.0038 30.6 6.8 40 86-125 59-99 (268)
372 2rjo_A Twin-arginine transloca 26.6 1.3E+02 0.0043 31.0 7.7 79 165-248 6-89 (332)
373 3hcw_A Maltose operon transcri 26.4 96 0.0033 31.2 6.6 78 165-248 8-92 (295)
374 3ezx_A MMCP 1, monomethylamine 26.4 3.2E+02 0.011 26.1 9.8 87 165-259 93-185 (215)
375 2x7x_A Sensor protein; transfe 26.1 2.2E+02 0.0075 28.9 9.5 80 164-248 6-88 (325)
376 4f2g_A Otcase 1, ornithine car 26.0 4.7E+02 0.016 26.5 11.4 132 32-199 46-185 (309)
377 3grc_A Sensor protein, kinase; 25.7 2E+02 0.007 24.4 7.9 56 180-246 18-75 (140)
378 2qip_A Protein of unknown func 25.7 2.8E+02 0.0097 25.0 9.0 95 153-248 36-134 (165)
379 2hsg_A Glucose-resistance amyl 25.6 1.3E+02 0.0046 30.7 7.7 79 164-248 60-140 (332)
380 2dri_A D-ribose-binding protei 25.5 1.6E+02 0.0056 28.9 8.1 79 165-248 2-83 (271)
381 4ecf_A ABC-type phosphate tran 25.5 79 0.0027 31.5 5.5 72 493-573 17-91 (264)
382 3gl9_A Response regulator; bet 25.5 2.8E+02 0.0097 22.8 8.8 57 180-247 14-72 (122)
383 3kbq_A Protein TA0487; structu 25.3 1.7E+02 0.0058 26.9 7.2 62 165-231 4-70 (172)
384 3c3k_A Alanine racemase; struc 24.9 2.3E+02 0.0079 28.0 9.2 78 164-248 8-87 (285)
385 3kn3_A Putative periplasmic pr 24.8 44 0.0015 32.9 3.3 74 491-573 18-94 (242)
386 3umf_A Adenylate kinase; rossm 24.1 26 0.0009 33.9 1.5 31 96-126 30-60 (217)
387 3brs_A Periplasmic binding pro 23.9 5.1E+02 0.018 25.2 12.4 118 32-159 132-257 (289)
388 1oi7_A Succinyl-COA synthetase 23.9 3.4E+02 0.011 27.3 9.9 132 81-233 73-209 (288)
389 2qmw_A PDT, prephenate dehydra 23.5 1.8E+02 0.006 29.0 7.4 82 693-780 4-96 (267)
390 3sr0_A Adenylate kinase; phosp 23.5 35 0.0012 32.8 2.2 30 97-126 2-31 (206)
391 3gt7_A Sensor protein; structu 23.4 3.6E+02 0.012 23.3 9.6 58 179-247 18-77 (154)
392 3to5_A CHEY homolog; alpha(5)b 23.1 2.9E+02 0.01 23.9 8.2 58 180-247 24-83 (134)
393 3qja_A IGPS, indole-3-glycerol 22.9 2.5E+02 0.0085 28.0 8.5 87 153-249 75-164 (272)
394 1uuy_A CNX1, molybdopterin bio 22.3 1.4E+02 0.0047 27.3 6.1 75 165-243 6-96 (167)
395 1nrz_A PTS system, sorbose-spe 22.2 1.6E+02 0.0056 26.8 6.3 79 152-240 15-93 (164)
396 3bbl_A Regulatory protein of L 22.0 1.3E+02 0.0045 30.0 6.5 78 165-248 5-88 (287)
397 2yv1_A Succinyl-COA ligase [AD 22.0 3.2E+02 0.011 27.6 9.3 132 81-233 79-215 (294)
398 1jlj_A Gephyrin; globular alph 21.7 2.5E+02 0.0087 26.2 7.9 68 161-232 11-87 (189)
399 2qv7_A Diacylglycerol kinase D 21.7 3.3E+02 0.011 28.0 9.7 76 164-245 24-102 (337)
400 2jwa_A Receptor tyrosine-prote 21.5 2E+02 0.0069 19.7 4.9 21 839-859 20-40 (44)
401 1vsq_C Mannose-specific phosph 21.5 1.4E+02 0.0049 27.2 5.8 80 152-241 18-97 (165)
402 2yv2_A Succinyl-COA synthetase 21.4 5.9E+02 0.02 25.6 11.2 132 81-233 80-216 (297)
403 3o1i_D Periplasmic protein TOR 21.4 1.1E+02 0.0037 30.8 5.8 80 165-248 6-88 (304)
404 3cs3_A Sugar-binding transcrip 21.4 5E+02 0.017 25.2 10.9 114 33-159 120-243 (277)
405 2q9u_A A-type flavoprotein; fl 21.3 7E+02 0.024 26.2 12.6 87 163-258 255-349 (414)
406 3clk_A Transcription regulator 21.2 1.1E+02 0.0037 30.7 5.7 80 164-248 8-89 (290)
407 3pzy_A MOG; ssgcid, seattle st 21.1 1.4E+02 0.0046 27.3 5.7 63 165-232 8-75 (164)
408 2l69_A Rossmann 2X3 fold prote 21.0 3.1E+02 0.011 21.6 8.1 100 138-247 25-125 (134)
409 2qmx_A Prephenate dehydratase; 20.9 2.2E+02 0.0076 28.6 7.6 77 693-780 7-94 (283)
410 3l4e_A Uncharacterized peptida 20.9 1.6E+02 0.0056 27.9 6.4 97 152-259 15-120 (206)
411 3jvd_A Transcriptional regulat 20.7 6.6E+02 0.023 25.3 13.0 116 32-160 175-298 (333)
412 1twy_A ABC transporter, peripl 20.7 1.5E+02 0.0053 29.1 6.8 60 26-103 24-83 (290)
413 4exl_A PBP 1, phosphate-bindin 20.6 1.5E+02 0.005 29.5 6.4 72 493-573 17-91 (265)
414 1dbq_A Purine repressor; trans 20.1 2.8E+02 0.0095 27.3 8.6 64 165-233 8-73 (289)
415 1gud_A ALBP, D-allose-binding 20.0 2.1E+02 0.0072 28.4 7.6 81 165-248 2-85 (288)
No 1
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=100.00 E-value=4.2e-97 Score=916.35 Aligned_cols=762 Identities=20% Similarity=0.342 Sum_probs=633.6
Q ss_pred ceEEEEEEeeCCCcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCC-ChHHHHHHHHHHHhcCcEEEEcCCChhH
Q 002364 30 AVVNVGALFTLDSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNC-SGFIGMVEALRFMETDIVAIIGPQCSTV 108 (930)
Q Consensus 30 ~~i~IG~i~~~s~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~l~~~D~~~-~~~~a~~~a~~li~~~v~aiiGp~~s~~ 108 (930)
++|+||+++|+++. ....|+++|+|+||+++ ++|+++++|++| ++..+..+++++++++|.|||||.+|..
T Consensus 1 ~~ikIG~l~~~tg~---~~~~a~~lAveeiN~~~-----~~l~~~~~D~~~~~~~~a~~~~~~l~~~~V~aiiG~~~S~~ 72 (823)
T 3kg2_A 1 NSIQIGGLFPRGAD---QEYSAFRVGMVQFSTSE-----FRLTPHIDNLEVANSFAVTNAFCSQFSRGVYAIFGFYDKKS 72 (823)
T ss_dssp CEEEEEEEEETTCH---HHHHHHHHHHHHTCCSS-----CEEEEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCTTT
T ss_pred CcceEEEEeCCCCh---HHHHHHHHHHHHHhcCC-----eEEEEEEEEcCCCChHHHHHHHHHHHhcCcEEEEcCCChhH
Confidence 37999999999864 78999999999999986 899999999999 8999999999999999999999999999
Q ss_pred HHHHHHhhccCCCcEEecccCCCCCCCCCCCceEeecCCchHHHHHHHHHHHhcCccEEEEEEEcCccccchHHHHHHHH
Q 002364 109 AHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKL 188 (930)
Q Consensus 109 ~~~v~~~~~~~~iP~is~~a~~~~l~~~~~p~~~r~~p~~~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l 188 (930)
+.+++++++.+++|+|++ +.+.. ..+||+||+.|+ ++.+++++++++||++|++|| |++||....+.+.+++
T Consensus 73 ~~a~~~i~~~~~iP~is~--~~~~~--~~~~~~~r~~p~---~~~a~~~l~~~~gw~~v~ii~-d~~~g~~~~~~~~~~~ 144 (823)
T 3kg2_A 73 VNTITSFCGTLHVSFITP--SFPTD--GTHPFVIQMRPD---LKGALLSLIEYYQWDKFAYLY-DSDRGLSTLQAVLDSA 144 (823)
T ss_dssp HHHHHHHHHHTTCEEEEC--SCCCS--SCCSSEEECSCC---CHHHHHHHHHHTTCSEEEEEE-CGGGCTHHHHHHHHHH
T ss_pred HHHHHHHhhcCCCceeec--ccCCC--CCCceEEEeCCC---HHHHHHHHHHHCCCCEEEEEE-eCChhHHHHHHHHHHh
Confidence 999999999999999997 33333 357899999998 889999999999999999999 7889999999999999
Q ss_pred hhcceEEEEEEecCCCCCCChhHHHHHHHHHHhCCceEEEEEcChhhHHHHHHHHHHcCcccCCeEEEEeCcchhcccCC
Q 002364 189 AERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATDWLAYMLDSA 268 (930)
Q Consensus 189 ~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~~~~~~~~~ 268 (930)
++.|+||++.+.++.+...+..|+..++.+|+++++|+||+++.+.++..++++|+++||+.++|+|+.+++.....+.
T Consensus 145 ~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~~~~~~~~- 223 (823)
T 3kg2_A 145 AEKKWQVTAINVGNINNDKKDETYRSLFQDLELKKERRVILDCERDKVNDIVDQVITIGKHVKGYHYIIANLGFTDGDL- 223 (823)
T ss_dssp HHTTCEEEEEECSSCCSSSTTTTTTTHHHHTTTTTCCEEEEECCHHHHHHHHHHHHHHTTTBTTCEEEECSSBSSSSCC-
T ss_pred hccCCceEEEEeecCCCCccchhHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCcCCCCeEEEEecccccccch-
Confidence 9999999998877654223367899999999999999999999999999999999999999999999999853332222
Q ss_pred CCChhhhhccccEEEEEEecCCChhhHHHHHHHhhhcCC------CCCCCchhHHHhHHHHHHHHHHHHHHhcCCcceec
Q 002364 269 SLPSETLESMQGVLVLRQHIPESDRKKNFLSRWKNLTGG------SLGMNSYGLYAYDSVWLLAHAIESFFNQGGKISFS 342 (930)
Q Consensus 269 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~------~~~~~~~~~~~YDav~~la~Al~~~~~~~~~~~~~ 342 (930)
....+...|++++.++.++++..++|.++|+++++. ...++.+++++||||+++|+|+++++.++.+...+
T Consensus 224 ---~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~~la~Al~~~~~~~~~~~~~ 300 (823)
T 3kg2_A 224 ---LKIQFGGAEVSGFQIVDYDDSLVSKFIERWSTLEEKEYPGAHTATIKYTSALTYDAVQVMTEAFRNLRKQRIEISRR 300 (823)
T ss_dssp ---SSSSSSBCEEEEEESSCTTSHHHHHHHHHHTTSCTTTSTTCCSSCCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCCS
T ss_pred ---HHhhcCCCCceEeeeecCCchHHHHHHHHHHhhcccccCCCCccccchhhHHHHHHHHHHHHHHHHHHhhccccccC
Confidence 233445667999999999999999999999988731 12367789999999999999999998765443211
Q ss_pred CCccccccCCCcccCCCc--cccCchHHHHHHHHhCcccccccceEEccCCCcccceEEEEEeeccceEEEEEEcCCCCC
Q 002364 343 NDSRLKTMEGGNLHLGAM--SIFDDGMLLLGNILQSNLVGLTGPLKFNSDRSLIHAAYDIINVIGTGFRMIGYWSNYSGL 420 (930)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~--~~~~~g~~l~~~l~~~~f~G~~G~v~fd~~g~~~~~~~~I~~~~~~~~~~vg~w~~~~gl 420 (930)
+....|... .+|.+|++|+++|++++|+|++|+++||++|++....|+|+++++++++.||+|++..|+
T Consensus 301 ---------~~~~~c~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~fd~~G~~~~~~~~I~~~~~~g~~~vg~w~~~~g~ 371 (823)
T 3kg2_A 301 ---------GNAGDCLANPAVPWGQGVEIERALKQVQVEGLSGNIKFDQNGKRINYTINIMELKTNGPRKIGYWSEVDKM 371 (823)
T ss_dssp ---------SCCCCTTCSSCCCCTHHHHHHHHHTTCCCEETTEECCBCSSSCBCSCEEEEEEECSSCEEEEEEEETTTEE
T ss_pred ---------CCCCCccCCCCCcccchHHHHHHHHhcccCCcccCeEECCCCcccccEEEEEEEcCCCCeeEEEEcCCCCc
Confidence 111233333 567789999999999999999999999999999899999999999999999999998876
Q ss_pred CcCCCcccccCCCCCCccccccceeEeCCCCccCCCcccccCCCceeEEEecCCccccceeeec------cCCcceEeee
Q 002364 421 SKEPPETLYAQPFNRSSTIQHLHSVIWPGETLSKPRGWVFPNNGKLLKIGVPNRASYREFVSKV------RGSDMFQGFC 494 (930)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~l~~i~wp~~~~~~p~~~~~~~~g~~lrv~~~~~~~~~p~~~~~------~~~~~~~G~~ 494 (930)
....+ . ..+.+|++|+|++.. ++||.+.. ++++++.|+|
T Consensus 372 ~~~~~------------------------------~--~~~~~~~~l~v~~~~---~~P~~~~~~~~~~~~~~~~~~G~~ 416 (823)
T 3kg2_A 372 VLTED------------------------------D--TSGLEQKTVVVTTIL---ESPYVMMKANHAALAGNERYEGYC 416 (823)
T ss_dssp EECCC------------------------------C--CSSCCCCCEEEEECC---CTTTSEECTTGGGCCGGGGEESHH
T ss_pred eeccC------------------------------c--ccccCCCEEEEEEec---CCCcEEEecCccccCCCCceEEEH
Confidence 53210 0 012358899999975 45555542 2477999999
Q ss_pred HHHHHHHHHhCCCcccEEEEecC---C-CCCCCCHHHHHHHHHcCcccEEEeeeeeecCceeeeeecccccccceEEEEe
Q 002364 495 IDVFTAAVNLLPYAVPYQFVAFG---D-GHKNPSYTQLVDSITTGVFDAVVGDITIVTNRTKIVDFSQPYAASGLVVVVP 570 (930)
Q Consensus 495 ~dl~~~l~~~l~f~~~~~~~~~~---~-~~~~~~~~~~~~~l~~g~~D~~~~~~~~t~~r~~~vdft~p~~~~~~~~lv~ 570 (930)
+||++++++++||++++..++.+ . ...|++|++++++|.+|++|++++++++|++|.+.+|||.||+.+++++++|
T Consensus 417 ~dl~~~~a~~l~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~l~~~~~D~~~~~~~~t~~R~~~~dfs~py~~~~~~~~v~ 496 (823)
T 3kg2_A 417 VDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIK 496 (823)
T ss_dssp HHHHHHHHHHHTCCEEEEECSSCCCCCBCTTTCCBCHHHHHHHTTSCSEECSCCBCCHHHHTTEEECSCSEEECEEEEEE
T ss_pred HHHHHHHHHHcCCcEEEEEccCCcccccCCCCCchhhHHHhhccccCcEEecceecchhheeeEEeccchhhCCEEEEEE
Confidence 99999999999999777776632 2 1257889999999999999999999999999999999999999999999999
Q ss_pred ccC-CCCCcceeeccCchhHHHHHHHHHHHHHHHhhhhhcccCCCCCCCc--------------cccchhhhHHHHHHhh
Q 002364 571 FRK-LNTGAWAFLRPFSPLMWTVTACFFVVVGIVVWILEHRINDEFRGPP--------------KRQVITILWFSLSTLF 635 (930)
Q Consensus 571 ~~~-~~~~~~~~l~PF~~~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~l~ 635 (930)
++. ..++++.|++||++++|++++++++++++++|+++|+.+.+|+.+. ..++.+++|+++++++
T Consensus 497 ~~~~~~~~~~~fl~Pf~~~vW~~i~~~~~~~~~~l~~~~~~~p~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 576 (823)
T 3kg2_A 497 KPQKSKPGVFSFLDPLAYEIWMCIVFAYIGVSVVLFLVSRFSPYEWHTEEFEDGRETQSSESTNEFGIFNSLWFSLGAFM 576 (823)
T ss_dssp CCCCCCCCGGGTTTTSCHHHHHHHHHHHHHHHTTGGGTC-----------------------CHHHHHHHHHHHTTTTSC
T ss_pred CCCcccccchHhhcCCchhHHHHHHHHHHHHHHHHHHHHhcChhhccCcccccccccccccccccccHHHHHHHHHHHHH
Confidence 987 4578999999999999999999999999999999998755544321 2247799999999999
Q ss_pred hcCcC-cccccchhhhHHHHHHHHHhhhhhhhhhhheeeecccccCCCCChHHhhhCCC-CeEEEeCchHHHHHHHhhcc
Q 002364 636 FAHKE-NTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLYSPINGIESLRKSDD-PIGYQEGSFAEYYLSQELNI 713 (930)
Q Consensus 636 ~~~~~-~~~s~s~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~-~v~~~~~s~~~~~l~~~~~~ 713 (930)
+|+.+ .|++.++|+++++||||+||++++|||+|+|+||++++.++|+|++||.+++. ++++..++...+++.+. +.
T Consensus 577 ~~g~~~~p~~~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~I~s~~dL~~~~~i~~~~~~~~~~~~~~~~~-~~ 655 (823)
T 3kg2_A 577 QQGADISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVERMVSPIESAEDLSKQTEIAYGTLDSGSTKEFFRRS-KI 655 (823)
T ss_dssp C------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSHHHHHCCSSEEECBSSSHHHHHHHHC-CC
T ss_pred hcCCCcCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCHHHHhhCCCeeEEEEeCCcHHHHHHhc-cc
Confidence 98866 89999999999999999999999999999999999999999999999997653 36666666677777542 11
Q ss_pred cc-cc----------ceecCCHHHHHHHHhcCCCCCceEEEEecchhHHHHHhcC-ccEEEeCccccccceeeeeCCCCc
Q 002364 714 SK-SR----------LVALRTPEDYAKALKDGPGKGGVAAVVDERPYVELFLSSQ-CSFRIVGQEFTKSGWGFAFPRDSP 781 (930)
Q Consensus 714 ~~-~~----------~~~~~~~~~~~~~l~~~~~~g~~~a~i~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~k~sp 781 (930)
.. .+ ...+.+.+++++.+.+. ++.+|++.+.+.++|+..++ |+++++++.+...++++++|||||
T Consensus 656 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~A~~~~~~~~~y~~~~~~c~l~~v~~~~~~~~~~~~~~k~sp 732 (823)
T 3kg2_A 656 AVFDKMWTYMRSAEPSVFVRTTAEGVARVRKS---KGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSS 732 (823)
T ss_dssp HHHHHHHHHHHHCSSCCCBSSHHHHHHHHHTT---TTSEEEEEEHHHHHHHHTSTTCCEEEESCCSSCEEECCEEETTCS
T ss_pred hHHHHHHHHHHhcCCccccCCHHHHHHHHhcc---CCceEEEechHHHHHHHhcCCCceEEccccccccceeEeecCCCh
Confidence 11 11 12245889999999721 56789999999999988776 999999999999999999999999
Q ss_pred chHHHHHHHHhhhhccchHHHHHHhcc-cCCCCCcccc--cccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 002364 782 LAVDLSSAILELAENGDLQRIHDKWLM-KSSCSLENAE--LESDRLHLSSFWGLFLICGVACFIALVIYFLQIMQQLCKS 858 (930)
Q Consensus 782 l~~~i~~~i~~l~e~G~~~~~~~~w~~-~~~c~~~~~~--~~~~~l~l~~l~g~f~il~~g~~ls~~vf~~E~~~~~~~~ 858 (930)
|++.||++|++++|+|++++|.++|+. ...|...... ....+|+++++.|+|++|++|+++|+++|++|++|++++.
T Consensus 733 l~~~~~~~il~l~e~G~~~~~~~~w~~~~~~c~~~~~~~~~~~~~L~l~~l~g~f~il~~g~~la~~vf~~E~~~~~~~~ 812 (823)
T 3kg2_A 733 LGTPVNLAVLKLSEQGLLDKLKNKWWYDKGECGAKDSGSKEKTSALSLSNVAGVFYILVGGLGLAMLVALIEFCYKSRAE 812 (823)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHTTSCSCSSTTTSTTTCCCSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHhCCcHHHHHHhhCcCCCCCCCCCccccccCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHcchh
Confidence 999999999999999999999999996 6788876432 3567999999999999999999999999999999877665
Q ss_pred C
Q 002364 859 A 859 (930)
Q Consensus 859 ~ 859 (930)
+
T Consensus 813 ~ 813 (823)
T 3kg2_A 813 A 813 (823)
T ss_dssp -
T ss_pred h
Confidence 4
No 2
>3o21_A Glutamate receptor 3; periplasmatic binding protein, oligomerization, membrane, TR protein; HET: NAG; 2.20A {Rattus norvegicus} PDB: 3p3w_A
Probab=100.00 E-value=2.5e-50 Score=451.12 Aligned_cols=368 Identities=15% Similarity=0.230 Sum_probs=317.7
Q ss_pred CceEEEEEEeeCCCcchhhHHHHHHHHHHHHhcCCCC-CCCCEEEEEEecCCC-ChHHHHHHHHHHHhcCcEEEEcCCCh
Q 002364 29 PAVVNVGALFTLDSTIGRVAKIAIEEAVKDVNSNSSI-LHGTKLNITMQSSNC-SGFIGMVEALRFMETDIVAIIGPQCS 106 (930)
Q Consensus 29 ~~~i~IG~i~~~s~~~g~~~~~a~~~Av~~iN~~~~i-l~g~~l~l~~~D~~~-~~~~a~~~a~~li~~~v~aiiGp~~s 106 (930)
+++|+||+++|++.. ..+.|+++|+|+||+++++ |+|++|+++++|++| ++..|+..+++|++++|.+||||.+|
T Consensus 3 ~~~i~IG~i~~~sg~---~~~~a~~lAv~eiN~~g~ill~g~~l~~~~~D~~~~d~~~a~~~a~~li~~~V~aiiG~~~S 79 (389)
T 3o21_A 3 PNTISIGGLFMRNTV---QEHSAFRFAVQLYNTNQNTTEKPFHLNYHVDHLDSSNSFSVTNAFCSQFSRGVYAIFGFYDQ 79 (389)
T ss_dssp CSEEEEEEEECTTCH---HHHHHHHHHHHHHHSCCCTTTCSSEEEEEEEECCTTCHHHHHHHHHHHHTTTCSCEEECCCT
T ss_pred CceeEEEEEeCCCCH---HHHHHHHHHHHHHhcCccccCCCcEEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEeCCCh
Confidence 578999999999865 7899999999999999999 699999999999998 99999999999999999999999999
Q ss_pred hHHHHHHHhhccCCCcEEecccCCCCCCCCCCCceEeecCCchHHHHHHHHHHHhcCccEEEEEEEcCccccchHHHHHH
Q 002364 107 TVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALND 186 (930)
Q Consensus 107 ~~~~~v~~~~~~~~iP~is~~a~~~~l~~~~~p~~~r~~p~~~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~ 186 (930)
..+.+++++++.++||+|+++. |.++ ..+|.||+.|+ |+.++++++++++|++|++|| |++||....+.+.+
T Consensus 80 ~~~~a~~~i~~~~~iP~Is~s~--~~~~--~~~~~~~~~p~---~~~a~~~~~~~~gw~~vaii~-d~~~g~~~~~~~~~ 151 (389)
T 3o21_A 80 MSMNTLTSFCGALHTSFVTPSF--PTDA--DVQFVIQMRPA---LKGAILSLLSYYKWEKFVYLY-DTERGFSVLQAIME 151 (389)
T ss_dssp TTHHHHHHHHHHHTCCEEECSC--CCSS--CCSSEEECSCC---SHHHHHHHHHHHTCCEEEEEE-CSTTCSHHHHHHHH
T ss_pred hHHHHHHHHhccCCCceeecCC--CCcc--CCceEEEEccC---HHHHHHHHHHhCCCCEEEEEE-cCcHHHHHHHHHHH
Confidence 9999999999999999998753 4443 34566777776 899999999999999999999 88999999999999
Q ss_pred HHhhcceEEEEEEecCCCCCCChhHHHHHHHHHHhCCceEEEEEcChhhHHHHHHHHHHcCcccCCeEEEEeCcchhccc
Q 002364 187 KLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATDWLAYMLD 266 (930)
Q Consensus 187 ~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~~~~~~~ 266 (930)
++++.|+||+..+.++.. ...|+.++|++|+++++|+||+++....+..++++|+++||+.++|+||.++.+....+
T Consensus 152 ~~~~~g~~v~~~~~~~~~---~~~d~~~~l~~ik~~~~~vii~~~~~~~~~~i~~qa~~~g~~~~~~~~i~~~~~~~~~~ 228 (389)
T 3o21_A 152 AAVQNNWQVTARSVGNIK---DVQEFRRIIEEMDRRQEKRYLIDCEVERINTILEQVVILGKHSRGYHYMLANLGFTDIL 228 (389)
T ss_dssp HHHHTTCEEEEEECTTCC---CTHHHHHHHHHHHTTTCCEEEEESCHHHHHHHHHHHHHHCSCSTTCEEEECCTTGGGCC
T ss_pred HhhcCCCeEEEEEecCCC---CcHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCcccCCeEEEEccCCccccc
Confidence 999999999988877543 35699999999999999999999999999999999999999999999999875444333
Q ss_pred CCCCChhhhhccccEEEEEEecCCChhhHHHHHHHhhhcCCC------CCCCchhHHHhHHHHHHHHHHHHHHhcCCcce
Q 002364 267 SASLPSETLESMQGVLVLRQHIPESDRKKNFLSRWKNLTGGS------LGMNSYGLYAYDSVWLLAHAIESFFNQGGKIS 340 (930)
Q Consensus 267 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~------~~~~~~~~~~YDav~~la~Al~~~~~~~~~~~ 340 (930)
. ........|++++.++.+++|..++|.++|+++++.. ..++.+++++||||+++|+|++++..++....
T Consensus 229 ~----~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~~~a~Al~~~~~~~~~~~ 304 (389)
T 3o21_A 229 L----ERVMHGGANITGFQIVNNENPMVQQFIQRWVRLDEREFPEAKNAPLKYTSALTHDAILVIAEAFRYLRRQRVDVS 304 (389)
T ss_dssp C----HHHHHTTCEEEEEESCCTTCHHHHHHHHHHTTSCTTTSTTSSSSCCCHHHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred H----HHHhcCCcceEEEEEecCCChhHHHHHHHHHhccccccCCCCCCccchhHHHHHHHHHHHHHHHHHHHhhCcccc
Confidence 2 3344566789999988899999999999999987311 13578899999999999999999987543322
Q ss_pred ecCCccccccCCCcccC--CCccccCchHHHHHHHHhCcccccccceEEccCCCcccceEEEEEeeccceEEEEEEcCCC
Q 002364 341 FSNDSRLKTMEGGNLHL--GAMSIFDDGMLLLGNILQSNLVGLTGPLKFNSDRSLIHAAYDIINVIGTGFRMIGYWSNYS 418 (930)
Q Consensus 341 ~~~~~~~~~~~~~~~~~--~~~~~~~~g~~l~~~l~~~~f~G~~G~v~fd~~g~~~~~~~~I~~~~~~~~~~vg~w~~~~ 418 (930)
++. ....| ++..+|.+|.+|+++|++++|+|++|+++||++|++.+..|+|+++.++++++||+|++..
T Consensus 305 ~~~---------~~~~~~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~Fd~~G~~~~~~~~i~~~~~~g~~~VG~w~~~~ 375 (389)
T 3o21_A 305 RRG---------SAGDCLANPAVPWSQGIDIERALKMVQVQGMTGNIQFDTYGRRTNYTIDVYEMKVSGSRKAGYWNEYE 375 (389)
T ss_dssp --------------CCSCSSSCCCTTTTHHHHHHHHTCCEEETTEEECBCTTSBBCSCCEEEEEEETTEEEEEEEEETTT
T ss_pred cCC---------CCCcCCCCCCCCCCCcHHHHHHHHhCcccccceeeeeCCCCCcccceEEEEEEcCCCceeeeEEcCCC
Confidence 110 11123 3456788899999999999999999999999999988899999999999999999999999
Q ss_pred CCCcC
Q 002364 419 GLSKE 423 (930)
Q Consensus 419 gl~~~ 423 (930)
||+..
T Consensus 376 g~~~~ 380 (389)
T 3o21_A 376 RFVPF 380 (389)
T ss_dssp EEECC
T ss_pred Ccccc
Confidence 98753
No 3
>3om0_A Glutamate receptor, ionotropic kainate 5; membrane protein, ION channel; HET: NAG BMA GOL; 1.40A {Rattus norvegicus} PDB: 3om1_A* 3qlu_A* 3qlv_A
Probab=100.00 E-value=5e-49 Score=442.68 Aligned_cols=370 Identities=18% Similarity=0.244 Sum_probs=309.7
Q ss_pred ceEEEEEEeeCCCcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCh-HHHHHHHHHHHhcCcEEEEcCCChhH
Q 002364 30 AVVNVGALFTLDSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSG-FIGMVEALRFMETDIVAIIGPQCSTV 108 (930)
Q Consensus 30 ~~i~IG~i~~~s~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~l~~~D~~~~~-~~a~~~a~~li~~~v~aiiGp~~s~~ 108 (930)
++|+||+++|+++.+|...+.|+++|+|+||+++|+|+|++|+++++|+++++ ..+...++++++++|.+||||.+|..
T Consensus 3 ~~ikIG~~~~~s~~~G~~~~~a~~lAv~eiN~~ggil~g~~l~~~~~D~~~~~~~~~~~~~~~l~~~~V~aiiG~~~S~~ 82 (393)
T 3om0_A 3 SSLRMAAILDDQTVCGRGERLALALAREQINGIIEVPAKARVEVDIFELQRDSQYETTDTMCQILPKGVVSVLGPSSSPA 82 (393)
T ss_dssp CEEEEEEEECCCCSSCCCHHHHHHHHHHHHHHSCCSSCCCEEEEEEEECCSSCHHHHHHHHHHHGGGCCSCEECCSSCHH
T ss_pred cceeEEEEecCCCcccHHHHHHHHHHHHHHhcCcccccCcEEEEEEEecCCCchhHHHHHHHHHHhcCcEEEECCCCchh
Confidence 47999999999999999999999999999999999999999999999999976 45668889999889999999999954
Q ss_pred -HHHHHHhhccCCCcEEecccCCCCCCCCCCCce--EeecCCchHHHHHHHHHHHhcCccEEEEEEEcCccccchHHHHH
Q 002364 109 -AHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFF--VRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALN 185 (930)
Q Consensus 109 -~~~v~~~~~~~~iP~is~~a~~~~l~~~~~p~~--~r~~p~~~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~ 185 (930)
+.+++++++++++|+|++++++. ...++|++ ||+.|++..|+.++++++++++|++|++||+|++||+...+.+
T Consensus 83 ~~~a~~~i~~~~~ip~is~~a~~~--~~~~~~~~~~fr~~p~~~~~~~~~~~~~~~~g~~~vaii~~~~~~g~~l~~~~- 159 (393)
T 3om0_A 83 SASTVSHICGEKEIPHIKVGPEET--PRLQYLRFASVSLYPSNEDVSLAVSRILKSFNYPSASLICAKAECLLRLEELV- 159 (393)
T ss_dssp HHHHHHHHHHHHTCCEEECSCCCC--C----CCSCCEESSCCHHHHHHHHHHHHHHTTSCCEEEEESSTTHHHHTHHHH-
T ss_pred HHHHHHHHHhccCCCeEeccCCcC--ccccccccceEEecCCHHHHHHHHHHHHHhCCCcEEEEEEeCchHHHHHHHHH-
Confidence 57999999999999999987641 12568988 9999999999999999999999999999999999998765555
Q ss_pred HHHhhcceEEEEEEecCCCCCCChhHHHHHHHHHHhCCceEEEEEcChhhHHHHHHHHHHcCcccCCeEEEEeCcchhcc
Q 002364 186 DKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATDWLAYML 265 (930)
Q Consensus 186 ~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~~~~~~ 265 (930)
+.+.+.|++|.... + ++ ..|+..++.+|+++++|+|++++.+.++..++++|+++||..++|+|+.+++.....
T Consensus 160 ~~~~~~g~~v~~~~-~-~~----~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~~~~~~ 233 (393)
T 3om0_A 160 RGFLISKETLSVRM-L-DD----SRDPTPLLKEIRDDKVSTIIIDANASISHLVLRKASELGMTSAFYKYILTTMDFPIL 233 (393)
T ss_dssp HHHHHSSSCEEEEE-C-C-----CCCSHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHHTTTTSTTCEEEECCTTGGGC
T ss_pred HhhhccCCeEEEEe-c-CC----CCCHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCcccCCeEEEEeccccccc
Confidence 55677899987654 3 34 568999999999999999999999999999999999999998899999988755443
Q ss_pred cCCCCChhhhhccccEEEEEEecCCChhhHHHHHHHhhhcCC------CCCCCchhHHHhHHHHHHHHHHHHHHhcCCcc
Q 002364 266 DSASLPSETLESMQGVLVLRQHIPESDRKKNFLSRWKNLTGG------SLGMNSYGLYAYDSVWLLAHAIESFFNQGGKI 339 (930)
Q Consensus 266 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~------~~~~~~~~~~~YDav~~la~Al~~~~~~~~~~ 339 (930)
+. ........|++++..+.+++|..++|.++|+++|+. ...++.+++++|||++++++|++++.... ..
T Consensus 234 ~l----~~~~~~~~~~~g~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~p~~~a~~~YDAv~~la~Al~~~~~~~-~~ 308 (393)
T 3om0_A 234 HL----DGIVEDSSNILGFSMFNTSHPFYPEFVRSLNMSWRENCEASTYPGPALSAALMFDAVHVVVSAVRELNRSQ-EI 308 (393)
T ss_dssp CC----TTTCCSSCSEEEEECCCTTSTTHHHHHHHHHHHHTTTSCGGGCCSCCHHHHHHHHHHHHHHHHHHHHTTTS-CC
T ss_pred ch----hhhhccCCcEEEEEEecCCccHHHHHHHHHHHHhhhhccCCCCCCCchHHHHHHhHHHHHHHHHHHHhhcc-cC
Confidence 32 123345678999998888899999999998888731 13577899999999999999999985431 11
Q ss_pred eecCCccccccCCCcccCCCccccCchHHHHHHHHhCcccccccceEEccCCCcccceEEEEEeeccceEEEEEEcCCCC
Q 002364 340 SFSNDSRLKTMEGGNLHLGAMSIFDDGMLLLGNILQSNLVGLTGPLKFNSDRSLIHAAYDIINVIGTGFRMIGYWSNYSG 419 (930)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~f~G~~G~v~fd~~g~~~~~~~~I~~~~~~~~~~vg~w~~~~g 419 (930)
......|....+|.++.+|.++|++++|+|++|+++||++|++.+..|+|+++++++++.||+|++..|
T Consensus 309 -----------~~~~~~c~~~~~~~~g~~l~~~l~~~~f~G~tG~i~fd~~G~~~~~~~~i~~~~~~g~~~VG~w~~~~g 377 (393)
T 3om0_A 309 -----------GVKPLACTSANIWPHGTSLMNYLRMVEYDGLTGRVEFNSKGQRTNYTLRILEKSRQGHREIGVWYSNRT 377 (393)
T ss_dssp -----------CCCCCCTTCCCCCTTHHHHHHHHTTCCEEETTEEECBCTTSCBCSCEEEEEEEETTEEEEEEEEECC--
T ss_pred -----------cCCCcCCCCCCcccCchHHHHHHHhCCCCCccceEEeCCCCcccceeEEEEEeccCCceEeeeEcCCCC
Confidence 122345677788989999999999999999999999999999889999999999999999999999999
Q ss_pred CCcCC
Q 002364 420 LSKEP 424 (930)
Q Consensus 420 l~~~~ 424 (930)
|+++.
T Consensus 378 l~~~~ 382 (393)
T 3om0_A 378 LAMNA 382 (393)
T ss_dssp -----
T ss_pred ccccc
Confidence 88653
No 4
>4gpa_A Glutamate receptor 4; PBP fold, ligand-gated ION channel, ION transport, transmembrane AMPA receptor regulating proteins, cornichons, ckamp44; HET: NAG; 2.25A {Rattus norvegicus}
Probab=100.00 E-value=4.3e-48 Score=435.24 Aligned_cols=374 Identities=17% Similarity=0.204 Sum_probs=318.5
Q ss_pred CCceEEEEEEeeCCCcchhhHHHHHHHHHHHHhcCCCCC-CCCEEEEEEecCC-CChHHHHHHHHHHHhcCcEEEEcCCC
Q 002364 28 RPAVVNVGALFTLDSTIGRVAKIAIEEAVKDVNSNSSIL-HGTKLNITMQSSN-CSGFIGMVEALRFMETDIVAIIGPQC 105 (930)
Q Consensus 28 ~~~~i~IG~i~~~s~~~g~~~~~a~~~Av~~iN~~~~il-~g~~l~l~~~D~~-~~~~~a~~~a~~li~~~v~aiiGp~~ 105 (930)
-|++|+||++||.++ .....|+++|||+||+++++| ++.+|.+...|++ +++..+.+.+|++++++|.|||||.+
T Consensus 2 ~P~~I~IG~lf~~~~---~~~~~a~~~Av~~iN~~~~ilg~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~V~aiiG~~~ 78 (389)
T 4gpa_A 2 FPSSVQIGGLFIRNT---DQEYTAFRLAIFLHNTSPNASEAPFNLVPHVDNIETANSFAVTNAFCSQYSRGVFAIFGLYD 78 (389)
T ss_dssp CCSEEEEEEEECTTC---HHHHHHHHHHHHHHHTCSCTTTCSSEEEEEEEECSSCCHHHHHHHHHHHHHTTCSEEEECCC
T ss_pred CCCeEEEEEEEcCCC---hHHHHHHHHHHHHHHhCCCCCCCCEEEEEEEecCCCchHHHHHHHHHHHHhcCCEEEEeCCc
Confidence 467999999999874 577899999999999999998 3445555554444 57889999999999999999999999
Q ss_pred hhHHHHHHHhhccCCCcEEecccCCCCCCCCCCCceEeecCCchHHHHHHHHHHHhcCccEEEEEEEcCccccchHHHHH
Q 002364 106 STVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALN 185 (930)
Q Consensus 106 s~~~~~v~~~~~~~~iP~is~~a~~~~l~~~~~p~~~r~~p~~~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~ 185 (930)
|..+.+++++++.++||+++++++.+.. .+|++++|+. +++++++++++|+|++|++||+++.++ ...+.+.
T Consensus 79 S~~~~~v~~i~~~~~ip~is~~~~~~~~--~~~~~~~~~~-----~~~a~~~l~~~~~w~~vaii~~~d~~~-~~~~~~~ 150 (389)
T 4gpa_A 79 KRSVHTLTSFCSALHISLITPSFPTEGE--SQFVLQLRPS-----LRGALLSLLDHYEWNCFVFLYDTDRGY-SILQAIM 150 (389)
T ss_dssp TTTHHHHHHHHHHTTCEEEECSCCCSSC--CSSEEECSCC-----CHHHHHHHHHHTTCCEEEEEECSTTCS-HHHHHHH
T ss_pred cHHHHHHHHHHHHhCCCceecccccccc--ccCCccccCC-----HHHHHHHHHHHcCCcEEEEEEecchhh-HHHHHHH
Confidence 9999999999999999999987655432 3456555543 357899999999999999999777665 4567888
Q ss_pred HHHhhcceEEEEEEecCCCCCCChhHHHHHHHHHHhCCceEEEEEcChhhHHHHHHHHHHcCcccCCeEEEEeCcchhcc
Q 002364 186 DKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATDWLAYML 265 (930)
Q Consensus 186 ~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~~~~~~ 265 (930)
+.+.+.|++|.....++.. ..++..+|.++++.++++||+.+...++..++++|+++|++.++|+|+.++++....
T Consensus 151 ~~~~~~g~~v~~~~~~~~~----~~d~~~~l~~i~~~~~~vIv~~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~ 226 (389)
T 4gpa_A 151 EKAGQNGWHVSAICVENFN----DVSYRQLLEELDRRQEKKFVIDCEIERLQNILEQIVSVGKHVKGYHYIIANLGFKDI 226 (389)
T ss_dssp HHHHTTTCEEEEEECTTCC----HHHHHHHHHHHHHHTCCEEEEECCHHHHHHHHHHHHHHTCSBTTCEEEECSSBGGGS
T ss_pred HHHHhcCceEEEEeecCCc----chhHHHHHHHhhccCCcEEEEEechhHHHHHHHHHHHhCCCCCceEEEEeCccccch
Confidence 8999999999988877655 899999999999999999999999999999999999999999999999998876654
Q ss_pred cCCCCChhhhhccccEEEEEEecCCChhhHHHHHHHhhhcC-----CCCCCCchhHHHhHHHHHHHHHHHHHHhcCCcce
Q 002364 266 DSASLPSETLESMQGVLVLRQHIPESDRKKNFLSRWKNLTG-----GSLGMNSYGLYAYDSVWLLAHAIESFFNQGGKIS 340 (930)
Q Consensus 266 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~-----~~~~~~~~~~~~YDav~~la~Al~~~~~~~~~~~ 340 (930)
.. ........|+.++....+.++..++|.++|++.+. .+..++.+++++||||+++|+|++++..+..+..
T Consensus 227 ~~----~~~~~~~~~i~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~a~~YDAV~~~A~Al~~~~~~~~~~~ 302 (389)
T 4gpa_A 227 SL----ERFIHGGANVTGFQLVDFNTPMVTKLMDRWKKLDQREYPGSETPPKYTSALTYDGVLVMAETFRSLRRQKIDIS 302 (389)
T ss_dssp CC----HHHHHHBCEEEEEECSCTTSHHHHHHHHHHTTSCTTTSTTTTSCCCHHHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred hh----hhhhhcccceEEEEeecCCChHHHHHHHHHHHHhhhhcccCCCChhHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 44 56667788999999999999999999999998763 3456788999999999999999999988765432
Q ss_pred ecCCccccccCCCcccCCCccccCchHHHHHHHHhCcccccccceEEccCCCcccceEEEEEeeccceEEEEEEcCCCCC
Q 002364 341 FSNDSRLKTMEGGNLHLGAMSIFDDGMLLLGNILQSNLVGLTGPLKFNSDRSLIHAAYDIINVIGTGFRMIGYWSNYSGL 420 (930)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~f~G~~G~v~fd~~g~~~~~~~~I~~~~~~~~~~vg~w~~~~gl 420 (930)
. ......+.|....+|.+|..|+++|++++|+|++|+|.||++|+|.+..|+|+|++++++++||+|++.+||
T Consensus 303 ~-------~~~~~~~~~~~~~~~~~G~~l~~~l~~v~f~G~tG~v~Fd~~G~r~~~~~~I~~l~~~~~~~VG~W~~~~gl 375 (389)
T 4gpa_A 303 R-------RGNAGDCLANPAAPWGQGIDMERTLKQVRIQGLTGNVQFDHYGRRVNYTMDVFELKSTGPRKVGYWNDMDKL 375 (389)
T ss_dssp C-------TTCCCCTTCSSCCCCTTHHHHHHHHHTCEEEETTEEEEBCTTSCBCSCEEEEEEEETTEEEEEEEEETTTEE
T ss_pred c-------cCCccccccCCCcccchHHHHHHHHHhCceecCceeEEECCCCCCCCCEEEEEEEECCEEEEEEEEECCCCe
Confidence 1 123445667788899999999999999999999999999999999889999999999999999999999999
Q ss_pred CcCCCcc
Q 002364 421 SKEPPET 427 (930)
Q Consensus 421 ~~~~~~~ 427 (930)
++..+++
T Consensus 376 ~~~~~~t 382 (389)
T 4gpa_A 376 VLIQDRT 382 (389)
T ss_dssp EECCC--
T ss_pred EECCCCc
Confidence 8876643
No 5
>4f11_A Gamma-aminobutyric acid type B receptor subunit 2; venus flytrap module, G-protein coupled receptor, signaling; 2.38A {Homo sapiens} PDB: 4f12_A*
Probab=100.00 E-value=2.1e-48 Score=443.82 Aligned_cols=368 Identities=20% Similarity=0.339 Sum_probs=317.3
Q ss_pred CCCCceEEEEEEeeCCC-----cchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCChHHHHHHHHHHHhc--CcE
Q 002364 26 SARPAVVNVGALFTLDS-----TIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMET--DIV 98 (930)
Q Consensus 26 ~~~~~~i~IG~i~~~s~-----~~g~~~~~a~~~Av~~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~--~v~ 98 (930)
++..++|+||+++|++. ..|.....|+++|+++||++ |+++|++|+++++|++|++..|+..+++|+.+ +|.
T Consensus 9 ~~~~~~i~IG~~~plsG~~a~~~~g~~~~~~~~lAv~~iN~~-g~l~g~~l~l~~~D~~~~~~~a~~~a~~li~~~~~v~ 87 (433)
T 4f11_A 9 PPSSPPLSIMGLMPLTKEVAKGSIGRGVLPAVELAIEQIRNE-SLLRPYFLDLRLYDTECDNAKGLKAFYDAIKYGPNHL 87 (433)
T ss_dssp --CCCEEEEEEEECCCTTSTTHHHHHHHHHHHHHHHHHHHHT-TTTTTCEEEEEEEECTTCHHHHHHHHHHHHHHSCCCS
T ss_pred cCCCCceEEEEEEEecCCCCCCccchhHHHHHHHHHHHHhcc-CCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCCceE
Confidence 34567999999999995 45788999999999999999 77789999999999999999999999999985 899
Q ss_pred EEEcCCChhHHHHHHHhhccCCCcEEecccCCCCCCC-CCCCceEeecCCchHHHHHHHHHHHhcCccEEEEEEEcCccc
Q 002364 99 AIIGPQCSTVAHIVSYVSNELQVPLLSFGVTDPTLSS-LQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYG 177 (930)
Q Consensus 99 aiiGp~~s~~~~~v~~~~~~~~iP~is~~a~~~~l~~-~~~p~~~r~~p~~~~~~~ai~~~l~~~~w~~v~ii~~d~~~g 177 (930)
+||||.+|..+.+++++++.+++|+|+++++++.+++ ..|||+||+.|++..++.++++++++++|++|++||+|++||
T Consensus 88 aviG~~~S~~~~a~~~~~~~~~ip~is~~~~~~~l~~~~~~~~~fr~~~~~~~~~~~~~~~~~~~g~~~v~ii~~~~~~g 167 (433)
T 4f11_A 88 MVFGGVCPSVTSIIAESLQGWNLVQLSFAATTPVLADKKKYPYFFRTVPSDNAVNPAILKLLKHYQWKRVGTLTQDVQRF 167 (433)
T ss_dssp EEEECCSHHHHHHHHHTHHHHTCEEEESSCCCGGGGCTTTCTTEEESSCCGGGHHHHHHHHHHHTTCCEEEEEEESSHHH
T ss_pred EEECCCcchHHHHHHHHHHhcCceEEEcccCCccccccccCCceEEecCchHHHHHHHHHHHHHcCCcEEEEEEecchhh
Confidence 9999999999999999999999999999999999998 579999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHhhcceEEEEEEecCCCCCCChhHHHHHHHHHHhCCceEEEEEcChhhHHHHHHHHHHcCcccCCeEEEE
Q 002364 178 RNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIA 257 (930)
Q Consensus 178 ~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~~~~~a~~~g~~~~~~~~i~ 257 (930)
+...+.+++.+++.|++|+..+.++. |+..++.+|+++++|+|++++.+.++..++++|+++|+...+|+||+
T Consensus 168 ~~~~~~~~~~~~~~g~~v~~~~~~~~-------d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~~i~ 240 (433)
T 4f11_A 168 SEVRNDLTGVLYGEDIEISDTESFSN-------DPCTSVKKLKGNDVRIILGQFDQNMAAKVFCCAYEENMYGSKYQWII 240 (433)
T ss_dssp HHHHHHHHHHSSSSSCEEEEEEEESS-------CCHHHHHHHHHTTCCEEEEECCHHHHHHHHHHHHHTTCCSTTCEEEE
T ss_pred HHHHHHHHHHHHHcCceEEEEeccCc-------CHHHHHHHHhhCCCeEEEEeCcHHHHHHHHHHHHHcCCCCCCeEEEE
Confidence 99999999999999999999887763 56788999999999999999999999999999999999888899999
Q ss_pred eCcchhccc---------CCCCChhhhhccccEEEEEEecCCC--------hhhHHHHHHHhhh-cCCCCCCCchhHHHh
Q 002364 258 TDWLAYMLD---------SASLPSETLESMQGVLVLRQHIPES--------DRKKNFLSRWKNL-TGGSLGMNSYGLYAY 319 (930)
Q Consensus 258 ~~~~~~~~~---------~~~~~~~~~~~~~g~~~~~~~~~~~--------~~~~~f~~~~~~~-~~~~~~~~~~~~~~Y 319 (930)
+++....+. ..+......++++|++++.++.+.. +..++|.++|+++ + +..++.++.++|
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~f~~~y~~~~~--~~~~~~~a~~~Y 318 (433)
T 4f11_A 241 PGWYEPSWWEQVHTEANSSRCLRKNLLAAMEGYIGVDFEPLSSKQIKTISGKTPQQYEREYNNKRS--GVGPSKFHGYAY 318 (433)
T ss_dssp ESCSCTTTTTCC------CCSCHHHHHHHHTTCEEEEECSSCCCCCCCTTSCCHHHHHHHHHHHHT--TSCCCTTHHHHH
T ss_pred cCcchHhHhcccccCCCCCCCCHHHHHHHHhCEEEEEEeecCCCCCcccCCCCHHHHHHHHHHhcC--CCCcccchhhHH
Confidence 998332221 1223345668899999999876532 3478899999987 5 677889999999
Q ss_pred HHHHHHHHHHHHHHhcCCcceecCCccccccCCCcccCC--CccccCchHHHHHHHHhCcccccccceEEccCCCcccce
Q 002364 320 DSVWLLAHAIESFFNQGGKISFSNDSRLKTMEGGNLHLG--AMSIFDDGMLLLGNILQSNLVGLTGPLKFNSDRSLIHAA 397 (930)
Q Consensus 320 Dav~~la~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~l~~~l~~~~f~G~~G~v~fd~~g~~~~~~ 397 (930)
|||+++|+|+++++.+.... +.+..+. ....|.++.+|+++|++++|+|++|+++| ++|++. ..
T Consensus 319 DAv~~la~Al~~a~~~~~~~------------~~~~~l~~~~~~~~~~~~~l~~~l~~~~f~G~tG~v~f-~~Gd~~-~~ 384 (433)
T 4f11_A 319 DGIWVIAKTLQRAMETLHAS------------SRHQRIQDFNYTDHTLGRIILNAMNETNFFGVTGQVVF-RNGERM-GT 384 (433)
T ss_dssp HHHHHHHHHHHHHHHHHHHS------------SSCCCGGGCSSCCHHHHHHHHHHHHTCEEEETTEEEEE-ETTEEE-CE
T ss_pred HHHHHHHHHHHHHHHHHhcc------------CCCCcccccccccHHHHHHHHHHHHhcEEEccceEEEE-ecCcee-ee
Confidence 99999999999987541100 0000011 11234568999999999999999999999 899964 89
Q ss_pred EEEEEeeccceEEEEEEcCC
Q 002364 398 YDIINVIGTGFRMIGYWSNY 417 (930)
Q Consensus 398 ~~I~~~~~~~~~~vg~w~~~ 417 (930)
|+|++++++++++||.|++.
T Consensus 385 ~~I~~~~~g~~~~VG~~~~~ 404 (433)
T 4f11_A 385 IKFTQFQDSREVKVGEYNAV 404 (433)
T ss_dssp EEEEEEETTEEEEEEEEETT
T ss_pred EEEEEEECCceEEEEEEECC
Confidence 99999999999999999864
No 6
>3h6g_A Glutamate receptor, ionotropic kainate 2; membrane protein glycoprotein, cell junction, cell membrane, glycoprotein, ION transport; HET: NAG TLA; 2.70A {Rattus norvegicus} PDB: 3h6h_A* 3qlv_C 3qlu_C* 3qlt_A* 3olz_A*
Probab=100.00 E-value=2.4e-48 Score=437.65 Aligned_cols=370 Identities=22% Similarity=0.308 Sum_probs=321.1
Q ss_pred CceEEEEEEeeCC-CcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCC-CChHHHHHHHHHHHhcCcEEEEcCCCh
Q 002364 29 PAVVNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSN-CSGFIGMVEALRFMETDIVAIIGPQCS 106 (930)
Q Consensus 29 ~~~i~IG~i~~~s-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~l~~~D~~-~~~~~a~~~a~~li~~~v~aiiGp~~s 106 (930)
+++|+||+++|++ +..|.....|+++|+|+||+++|+|+|++|++++.|+. .|+..+...++++++++|.+||||.+|
T Consensus 2 ~~~i~IG~l~~~sg~~~g~~~~~a~~lAv~eiN~~ggil~~~~l~~~~~~~~~~d~~~~~~~a~~l~~~~V~aiiG~~~S 81 (395)
T 3h6g_A 2 THVLRFGGIFEYVESGPMGAEELAFRFAVNTINRNRTLLPNTTLTYDTQKINLYDSFEASKKACDQLSLGVAAIFGPSHS 81 (395)
T ss_dssp CEEEEEEEEEEESSSCSCCHHHHHHHHHHHHHHHCSSSSSSEEEEEEEEEEETTCHHHHHHHHHHHHHHCCSCEECCSSH
T ss_pred CcceEEEEEecCCCcccchHHHHHHHHHHHHHhcCccccCCceEEEEEeecCCcChHHHHHHHHHhhhcCcEEEECCCCh
Confidence 5689999999997 45788999999999999999999998889999998887 588889999999999999999999999
Q ss_pred hHHHHHHHhhccCCCcEEecccCCCCCCCCCCCceEeecCCchHHHHHHHHHHHhcCccEEEEEEEcCccccchHHHHHH
Q 002364 107 TVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALND 186 (930)
Q Consensus 107 ~~~~~v~~~~~~~~iP~is~~a~~~~l~~~~~p~~~r~~p~~~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~ 186 (930)
..+.+++++++++++|+|+++++++.+++ ..+|+||+.|++..++.++++++++++|++|++|| |++||+...+.+++
T Consensus 82 ~~~~a~~~~~~~~~ip~is~~~~~~~l~~-~~~~~~r~~~~~~~~~~~~~~~~~~~g~~~v~ii~-d~~~g~~~~~~~~~ 159 (395)
T 3h6g_A 82 SSANAVQSICNALGVPHIQTRWKHQVSDN-KDSFYVSLYPDFSSLSRAILDLVQFFKWKTVTVVY-DDSTGLIRLQELIK 159 (395)
T ss_dssp HHHHHHHHHHHHTTCCEEECSCCCCCTTC-CCCSEEEEEECHHHHHHHHHHHHHHTTCSEEEEEE-SSTHHHHHTHHHHT
T ss_pred hHHHHHHHHHhcCCCCeEeeccCcccccc-cCceEEEecCCHHHHHHHHHHHHHHCCCeEEEEEE-EChhHHHHHHHHHH
Confidence 99999999999999999999999999876 36889999999999999999999999999999998 77899999999999
Q ss_pred HHhhcceEEEEEEecCCCCCCChhHHHHHHHHHHhCCceEEEEEcChhhHHHHHHHHHHcCcccCCeEEEEeCcchhccc
Q 002364 187 KLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATDWLAYMLD 266 (930)
Q Consensus 187 ~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~~~~~~~ 266 (930)
.+++.|++|+... ++.+ ..|+..++.+|+++++|+|++++.+.++..+++||+++||..+.|+|+.+++.....+
T Consensus 160 ~~~~~g~~v~~~~-~~~~----~~d~~~~l~~i~~~~~~vi~~~~~~~~~~~~~~qa~~~gl~~~~~~~i~~~~~~~~~~ 234 (395)
T 3h6g_A 160 APSRYNLRLKIRQ-LPAD----TKDAKPLLKEMKRGKEFHVIFDCSHEMAAGILKQALAMGMMTEYYHYIFTTLDLFALD 234 (395)
T ss_dssp GGGTSSCEEEEEE-CCSS----GGGGHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCSTTCEEEECCTTGGGBC
T ss_pred hhhcCCceEEEEE-eCCC----chhHHHHHHHHhhcCCeEEEEECCHHHHHHHHHHHHHccccCCceEEEEecCceeEec
Confidence 9999999999875 7765 7899999999999999999999999999999999999999999999999864322222
Q ss_pred CCCCChhhhhccccEEEEEEecCCChhhHHHHHHHhhhcCCC----------CCCCchhHHHhHHHHHHHHHHHHHHhcC
Q 002364 267 SASLPSETLESMQGVLVLRQHIPESDRKKNFLSRWKNLTGGS----------LGMNSYGLYAYDSVWLLAHAIESFFNQG 336 (930)
Q Consensus 267 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~----------~~~~~~~~~~YDav~~la~Al~~~~~~~ 336 (930)
. ........++.++.++.++++..++|.++|++++... ..++.+++++|||++++++|++++...
T Consensus 235 ~----~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~p~~~~~~~~~~~~~~aa~~YDav~~~a~Al~~a~~~- 309 (395)
T 3h6g_A 235 V----EPYRYSGVNMTGFRILNTENTQVSSIIEKWSMERLQAPPKPDSGLLDGFMTTDAALMYDAVHVVSVAVQQFPQM- 309 (395)
T ss_dssp C----TTTTTSCCEEEEEECSCTTSHHHHHHHHHHHHC------CCSSCBCTTCCCHHHHHHHHHHHHHHHHHHTCTTC-
T ss_pred h----HHhccCccceEEEEEecCCcHHHHHHHHHHHhcccccCcccCCCcCCCccchhHHHHHhHHHHHHHHHHhhhcC-
Confidence 2 1111112236777778888999999999999865211 124679999999999999999986432
Q ss_pred CcceecCCccccccCCCcccCCCccccCchHHHHHHHHhCcccccccceEEcc-CCCcccceEEEEEeeccceEEEEEEc
Q 002364 337 GKISFSNDSRLKTMEGGNLHLGAMSIFDDGMLLLGNILQSNLVGLTGPLKFNS-DRSLIHAAYDIINVIGTGFRMIGYWS 415 (930)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~f~G~~G~v~fd~-~g~~~~~~~~I~~~~~~~~~~vg~w~ 415 (930)
......|.+.++|.++..|.++|++++|+|++|+++||+ +|++....|+|+++++++++.||+|+
T Consensus 310 --------------~~~~~~c~~~~~~~~~~~l~~al~~~~~~G~tG~i~fd~~~G~~~~~~~~i~~~~~~~~~~vG~w~ 375 (395)
T 3h6g_A 310 --------------TVSSLQCNRHKPWRFGTRFMSLIKEAHWEGLTGRITFNKTNGLRTDFDLDVISLKEEGLEKIGTWD 375 (395)
T ss_dssp --------------CCCCCCTTSCCCCTTHHHHHHHHHHCEEEETTEEEECCTTTSEECCCCEEEEEEETTEEEEEEEEE
T ss_pred --------------CCcCCCCCCCCcCcccHHHHHHHhcCCCcCcceeeEecCCCCeecCCeEEEEEeccCCceEEEEEc
Confidence 112345777788999999999999999999999999999 99998889999999999999999999
Q ss_pred CCCCCCcCC
Q 002364 416 NYSGLSKEP 424 (930)
Q Consensus 416 ~~~gl~~~~ 424 (930)
+..|+++..
T Consensus 376 ~~~g~~~~~ 384 (395)
T 3h6g_A 376 PASGLNMTE 384 (395)
T ss_dssp TTTEECCCC
T ss_pred CCCCccccC
Confidence 999987653
No 7
>3hsy_A Glutamate receptor 2; ligand-gated ION channel, synapse, cell CELL membrane, endoplasmic reticulum, glycoprotein, ION TRA ionic channel; HET: NAG BMA; 1.75A {Rattus norvegicus} PDB: 3h5v_A* 3h5w_A 3o2j_A* 2wjw_A* 2wjx_A 3n6v_A
Probab=100.00 E-value=8.3e-48 Score=429.41 Aligned_cols=363 Identities=17% Similarity=0.257 Sum_probs=292.9
Q ss_pred eEEEEEEeeCCCcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCC-ChHHHHHHHHHHHhcCcEEEEcCCChhHH
Q 002364 31 VVNVGALFTLDSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNC-SGFIGMVEALRFMETDIVAIIGPQCSTVA 109 (930)
Q Consensus 31 ~i~IG~i~~~s~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~l~~~D~~~-~~~~a~~~a~~li~~~v~aiiGp~~s~~~ 109 (930)
+|+||+++|+++ ...+.|+++|+++||++ |++|++++.|+++ ++..+++.+++|++++|.+||||.+|..+
T Consensus 2 ~i~IG~i~~~sg---~~~~~~~~lAv~~iN~~-----g~~l~~~~~d~~~~d~~~a~~~~~~li~~~V~aiiG~~~S~~~ 73 (376)
T 3hsy_A 2 SIQIGGLFPRGA---DQEYSAFRVGMVQFSTS-----EFRLTPHIDNLEVANSFAVTNAFCSQFSRGVYAIFGFYDKKSV 73 (376)
T ss_dssp EEEEEEEEETTC---HHHHHHHHHHHHHTCCS-----SCEEEEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCTTTH
T ss_pred ceeEEEEeCCCC---HHHHHHHHHHHHHHhcC-----CeEEEEEEeecCCCChHHHHHHHHHHHhcCcEEEECCCchhHH
Confidence 699999999985 46799999999999997 6899999999765 99999999999999999999999999999
Q ss_pred HHHHHhhccCCCcEEecccCCCCCCCCCCCceEeecCCchHHHHHHHHHHHhcCccEEEEEEEcCccccchHHHHHHHHh
Q 002364 110 HIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLA 189 (930)
Q Consensus 110 ~~v~~~~~~~~iP~is~~a~~~~l~~~~~p~~~r~~p~~~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~ 189 (930)
.++++++++++||+|+++++ . ....+|+||+.|+ |+.+++++++++||++|++|| |++||....+.+.+.++
T Consensus 74 ~av~~~~~~~~ip~is~~~~--~--~~~~~~~~~~~p~---~~~a~~~~~~~~gw~~vaii~-d~~~g~~~~~~~~~~~~ 145 (376)
T 3hsy_A 74 NTITSFCGTLHVSFITPSFP--T--DGTHPFVIQMRPD---LKGALLSLIEYYQWDKFAYLY-DSDRGLSTLQAVLDSAA 145 (376)
T ss_dssp HHHHHHHHHHTCEEEECSCC--C--CSCCTTEEECSCC---CHHHHHHHHHHTTCCEEEEEE-CSTTCSHHHHHHHHHHH
T ss_pred HHHHHHhccCcCceeecCCC--C--cccCCceEEeCcc---HHHHHHHHHHhcCCCEEEEEE-eCchhHHHHHHHHHHhh
Confidence 99999999999999998763 2 2356889999876 899999999999999999999 89999999999999999
Q ss_pred hcceEEEEEEecCCCCCCChhHHHHHHHHHHhCCceEEEEEcChhhHHHHHHHHHHcCcccCCeEEEEeCcchhcccCCC
Q 002364 190 ERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATDWLAYMLDSAS 269 (930)
Q Consensus 190 ~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~~~~~~~~~~ 269 (930)
+.|++|+....++.....+..|+.++|.+|+++++|+||+++.+..+..++++++++||+.++|+||.+++.....+.
T Consensus 146 ~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~qa~~~g~~~~~~~~i~~~~~~~~~~~-- 223 (376)
T 3hsy_A 146 EKKWQVTAINVGNINNDKKDETYRSLFQDLELKKERRVILDCERDKVNDIVDQVITIGKHVKGYHYIIANLGFTDGDL-- 223 (376)
T ss_dssp HHTCEEEEEECTTCC--------------------CEEEEESCHHHHHHHHHHHHHHTSSGGGCEEEECSSBTTSTTG--
T ss_pred hcCCeEEEEEeccccccccchhHHHHHHHHhhCCCeEEEEECCHHHHHHHHHHHHHcccCCCCcEEEEcCCCccccch--
Confidence 999999987766432001368999999999999999999999999999999999999999889999998753222111
Q ss_pred CChhhhhccccEEEEEEecCCChhhHHHHHHHhhhcCCC------CCCCchhHHHhHHHHHHHHHHHHHHhcCCcceecC
Q 002364 270 LPSETLESMQGVLVLRQHIPESDRKKNFLSRWKNLTGGS------LGMNSYGLYAYDSVWLLAHAIESFFNQGGKISFSN 343 (930)
Q Consensus 270 ~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~------~~~~~~~~~~YDav~~la~Al~~~~~~~~~~~~~~ 343 (930)
........+++++.++.+++|..++|.++|+++++.. ..++.+++++||||+++++|++++..++.....
T Consensus 224 --~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~aa~~YDav~~la~Ai~~~~~~~~~~~~-- 299 (376)
T 3hsy_A 224 --LKIQFGGANVSGFQIVDYDDSLVSKFIERWSTLEEKEYPGAHTATIKYTSALTYDAVQVMTEAFRNLRKQRIEISR-- 299 (376)
T ss_dssp --GGSCCTTCEEEEEESCCTTSHHHHHHHHHHTTSCTTTSTTCSCSSCCHHHHHHHHHHHHHHHHHHHHHHTTCCCSC--
T ss_pred --HHhhcCCcCceEEEEecCCchHHHHHHHHHHhccccccCCCCCcccchhHHHHHHHHHHHHHHHHHHHhcCCcccc--
Confidence 1122233458888888888999999999999987311 147889999999999999999999876443221
Q ss_pred CccccccCCCcccC--CCccccCchHHHHHHHHhCcccccccceEEccCCCcccceEEEEEeeccceEEEEEEcCCCCCC
Q 002364 344 DSRLKTMEGGNLHL--GAMSIFDDGMLLLGNILQSNLVGLTGPLKFNSDRSLIHAAYDIINVIGTGFRMIGYWSNYSGLS 421 (930)
Q Consensus 344 ~~~~~~~~~~~~~~--~~~~~~~~g~~l~~~l~~~~f~G~~G~v~fd~~g~~~~~~~~I~~~~~~~~~~vg~w~~~~gl~ 421 (930)
.+....| ++..+|.+|.+|+++|++++|+|++|+++||++|++....|+|+++++++++.||+|++.+||+
T Consensus 300 -------~~~~~~~~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~fd~~G~~~~~~~~i~~~~~~g~~~VG~w~~~~g~~ 372 (376)
T 3hsy_A 300 -------RGNAGDCLANPAVPWGQGVEIERALKQVQVEGLSGNIKFDQNGKRINYTINIMELKTNGPRKIGYWSEVDKMV 372 (376)
T ss_dssp -------CCCCCCTTCSSCCCCHHHHHHHHHHHHCCEEETTEEECBCTTSBBCSCEEEEEEEETTEEEEEEEEETTTEEE
T ss_pred -------CCCCCccCCCCCCCcCCcHHHHHHHHhcCcCCCccceeECCCCCCccceEEEEEecCCCceEEEEEcCCCCce
Confidence 0111234 5567788899999999999999999999999999998999999999999999999999999876
Q ss_pred c
Q 002364 422 K 422 (930)
Q Consensus 422 ~ 422 (930)
.
T Consensus 373 ~ 373 (376)
T 3hsy_A 373 V 373 (376)
T ss_dssp E
T ss_pred e
Confidence 4
No 8
>3saj_A Glutamate receptor 1; rossman fold, ION channel, membrane, transport protein; HET: NAG BMA MAN; 2.50A {Rattus norvegicus}
Probab=100.00 E-value=3e-47 Score=426.44 Aligned_cols=367 Identities=18% Similarity=0.231 Sum_probs=314.2
Q ss_pred CCCceEEEEEEeeCCCcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCC-ChHHHHHHHHHHHhcCcEEEEcCCC
Q 002364 27 ARPAVVNVGALFTLDSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNC-SGFIGMVEALRFMETDIVAIIGPQC 105 (930)
Q Consensus 27 ~~~~~i~IG~i~~~s~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~l~~~D~~~-~~~~a~~~a~~li~~~v~aiiGp~~ 105 (930)
..+++|+||+++|+++. ....|+++|+|+||+++ +|++++.|+++ ++..++.++++|++++|.+||||.+
T Consensus 6 ~~~~~ikIG~~~~~sg~---~~~~a~~lAv~~iN~~g------~l~~~~~D~~~~d~~~a~~~~~~l~~~~V~aiiG~~~ 76 (384)
T 3saj_A 6 AMPNNIQIGGLFPNQQS---QEHAAFRFALSQLTEPP------KLLPQIDIVNISDSFEMTYRFCSQFSKGVYAIFGFYE 76 (384)
T ss_dssp CCCSEEEEEEEESCSSS---HHHHHHHHHHTTCCSSS------EEEEEEEECCTTCHHHHHHHHHHHHHTTCSCEEECCC
T ss_pred CCCcceeEEEEecCCCH---HHHHHHHHHHHHHhcCC------ccceeeEecccCchhhHHHHHHHHHhcCeEEEECCCC
Confidence 45679999999999975 78999999999999975 99999999987 9999999999999999999999999
Q ss_pred hhHHHHHHHhhccCCCcEEecccCCCCCCCCCCCceEeecCCchHHHHHHHHHHHhcCccEEEEEEEcCccccchHHHHH
Q 002364 106 STVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALN 185 (930)
Q Consensus 106 s~~~~~v~~~~~~~~iP~is~~a~~~~l~~~~~p~~~r~~p~~~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~ 185 (930)
|..+.+++++++++++|+|+++ +|.++ ..+|+||+.|+ ++.+++++++++||++|++|| |++||+...+.+.
T Consensus 77 S~~~~a~~~~~~~~~iP~is~~--~~~~~--~~~~~~~~~p~---~~~a~~~~~~~~g~~~v~ii~-d~~~g~~~~~~~~ 148 (384)
T 3saj_A 77 RRTVNMLTSFCGALHVCFITPS--FPVDT--SNQFVLQLRPE---LQEALISIIDHYKWQTFVYIY-DADRGLSVLQRVL 148 (384)
T ss_dssp HHHHHHHHHHHHHHTCCEEECS--CCCSS--CCTTEEECSCC---CHHHHHHHHHHTTCCEEEEEE-CSTTCSHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCeEecc--ccCcC--ccCceEEeccc---HHHHHHHHHHHCCCcEEEEEE-eCchhHHHHHHHH
Confidence 9999999999999999999984 45443 45678888887 899999999999999999999 7789999999999
Q ss_pred HHHhhcceEEEEEEecCCCCCCChhHHHHHHHHHHhCCceEEEEEcChhhHHHHHHHHHHcCcccCCeEEEEeCcchhcc
Q 002364 186 DKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATDWLAYML 265 (930)
Q Consensus 186 ~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~~~~~~ 265 (930)
+.+++.|++|+..+.++.+ ..|+.++|.+|+++++|+||+++.+.++..++++|+++||+.++|+|+.++......
T Consensus 149 ~~~~~~g~~v~~~~~~~~~----~~d~~~~l~~ik~~~~~vii~~~~~~~~~~~~~qa~~~g~~~~~~~~i~~~~~~~~~ 224 (384)
T 3saj_A 149 DTAAEKNWQVTAVNILTTT----EEGYRMLFQDLEKKKERLVVVDCESERLNAILGQIVKLEKNGIGYHYILANLGFMDI 224 (384)
T ss_dssp HHHHHHTCEEEEEEGGGCC----HHHHHHTTTTCCSCSEEEEEEECCGGGHHHHHHHHHHTCCTTCEEEEEESSSCGGGS
T ss_pred HHhhhcCceEEEEEeccCC----chhHHHHHHHHhccCCcEEEEEcCHHHHHHHHHHHHHcCCCCCCcEEEEECCCcccc
Confidence 9999999999988765544 789999999999999999999999999999999999999998899999988533222
Q ss_pred cCCCCChhhhhccccEEEEEEecCCChhhHHHHHHHhhhcCC------CCCCCchhHHHhHHHHHHHHHHHHHHhcCCcc
Q 002364 266 DSASLPSETLESMQGVLVLRQHIPESDRKKNFLSRWKNLTGG------SLGMNSYGLYAYDSVWLLAHAIESFFNQGGKI 339 (930)
Q Consensus 266 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~------~~~~~~~~~~~YDav~~la~Al~~~~~~~~~~ 339 (930)
+. ........|++++.++.+++|..++|.++|+++++. ...++.+++++||||+++++|++++...++++
T Consensus 225 ~~----~~~~~~~~~v~~~~~~~~~~~~~~~F~~~~~~~~~~~~p~~~~~~~~~~aa~~YDav~~~a~Al~~~~~~~~~~ 300 (384)
T 3saj_A 225 DL----NKFKESGANVTGFQLVNYTDTIPARIMQQWRTSDSRDHTRVDWKRPKYTSALTYDGVKVMAEAFQSLRRQRIDI 300 (384)
T ss_dssp CH----HHHHHTTCCEEEEECCCTTSHHHHHHHHHHHHHHHHC------CCCCHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred cH----HHhhCCCcceEEEEeecCCChHHHHHHHHHHhcCccccCCCCCCccchhHHHHHHHHHHHHHHHHHHHhhccce
Confidence 21 234455678999999999999999999999988731 11457789999999999999999998765443
Q ss_pred eecCCccccccCCCcccCCCc--cccCchHHHHHHHHhCcccccccceEEccCCCcccceEEEEEeeccceEEEEEEcCC
Q 002364 340 SFSNDSRLKTMEGGNLHLGAM--SIFDDGMLLLGNILQSNLVGLTGPLKFNSDRSLIHAAYDIINVIGTGFRMIGYWSNY 417 (930)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~l~~~l~~~~f~G~~G~v~fd~~g~~~~~~~~I~~~~~~~~~~vg~w~~~ 417 (930)
..+ +....|... .+|.+|..|+++|++++|+|++|+++||+||++.+..|+|+++++++++.||+|++.
T Consensus 301 ~~~---------~~~~~c~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~fd~~G~~~~~~~~i~~~~~~g~~~VG~W~~~ 371 (384)
T 3saj_A 301 SRR---------GNAGDCLANPAVPWGQGIDIQRALQQVRFEGLTGNVQFNEKGRRTNYTLHVIEMKHDGIRKIGYWNED 371 (384)
T ss_dssp CCC---------CSCCCSCCBSCCCCTTHHHHHHHHHSCCEEETTEEECBCTTSBBCSCCEEEEEEETTEEEEEEEEETT
T ss_pred ecC---------CCCCCCCCCCCCCcCCcHHHHHHHHhCcCcccceeeEeCCCCCcccceEEEEEeccCCcceeEEEcCC
Confidence 211 111234432 567889999999999999999999999999999899999999999999999999999
Q ss_pred CCCCcCCCcc
Q 002364 418 SGLSKEPPET 427 (930)
Q Consensus 418 ~gl~~~~~~~ 427 (930)
.|+++.+++.
T Consensus 372 ~gl~~~~~~~ 381 (384)
T 3saj_A 372 DKFVPAALEV 381 (384)
T ss_dssp TEEEECCC--
T ss_pred CCccccCccc
Confidence 9988766543
No 9
>1jdp_A NPR-C, atrial natriuretic peptide clearance receptor; hormone-receptor complex, natriuretic peptide receptor, ALLO activation, signaling protein; HET: NDG NAG; 2.00A {Homo sapiens} SCOP: c.93.1.1 PDB: 1jdn_A* 1yk0_A* 1yk1_A*
Probab=100.00 E-value=3e-46 Score=426.90 Aligned_cols=361 Identities=16% Similarity=0.242 Sum_probs=301.3
Q ss_pred CCceEEEEEEeeCCC---cchhhHHHHHHHHHHHHhcCCC----CCCCCEEEEEEecCCCChHHHHHHHHHHH----hcC
Q 002364 28 RPAVVNVGALFTLDS---TIGRVAKIAIEEAVKDVNSNSS----ILHGTKLNITMQSSNCSGFIGMVEALRFM----ETD 96 (930)
Q Consensus 28 ~~~~i~IG~i~~~s~---~~g~~~~~a~~~Av~~iN~~~~----il~g~~l~l~~~D~~~~~~~a~~~a~~li----~~~ 96 (930)
.+++|+||+++|++. ..|.....|+++|+|+||++++ +|+|++|+++++|++|++. |+..+.+++ +++
T Consensus 6 ~~~~i~IG~~~p~sg~~~~~g~~~~~a~~~Av~eiN~~~~~~~~ll~g~~l~~~~~D~~~~~~-a~~~~~~~~~~~~~~~ 84 (441)
T 1jdp_A 6 PPQKIEVLVLLPQDDSYLFSLTRVRPAIEYALRSVEGNGTGRRLLPPGTRFQVAYEDSDCGNR-ALFSLVDRVAAARGAK 84 (441)
T ss_dssp CCCEEEEEEEECSSTTSTTCHHHHHHHHHHHHHHHCC-----CCSCTTCEEEEEEEECTTSTH-HHHHHHHHHHHTTTCC
T ss_pred CCCceEEEEEcCCCCCcccchhhhHHHHHHHHHHHHhCCCcccccCCCcEEEEEEecCCCchh-HHHHHHHHHHhhccCC
Confidence 456899999999984 3456788999999999999998 8899999999999999998 766665554 238
Q ss_pred cEEEEcCCChhHHHHHHHhhccCCCcEEecccCCCCCCCC--CCCceEeecCCchHHHHHHHHHHHhcCccEEEEEEEcC
Q 002364 97 IVAIIGPQCSTVAHIVSYVSNELQVPLLSFGVTDPTLSSL--QYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDN 174 (930)
Q Consensus 97 v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~a~~~~l~~~--~~p~~~r~~p~~~~~~~ai~~~l~~~~w~~v~ii~~d~ 174 (930)
|.+||||.+|..+.+++++++.+++|+|+++++++.++++ +|||+||+.|++..++.++++++++++|++|++||+|+
T Consensus 85 v~aiiG~~~S~~~~~v~~~~~~~~ip~is~~~~~~~ls~~~~~~~~~fr~~p~~~~~~~a~~~~~~~~~w~~v~ii~~d~ 164 (441)
T 1jdp_A 85 PDLILGPVCEYAAAPVARLASHWDLPMLSAGALAAGFQHKDSEYSHLTRVAPAYAKMGEMMLALFRHHHWSRAALVYSDD 164 (441)
T ss_dssp CSEEECCCSHHHHHHHHHHHHHHTCCEEESCCCSGGGGCTTTTTTTEEECSCCHHHHHHHHHHHHHHHTCCEEEEEEECC
T ss_pred ceEEECCCchhhHHHHHHHHhhcCCcEEcCCCCchhhccccccCCceEEecCcHHHHHHHHHHHHHhcCCcEEEEEEEcC
Confidence 9999999999999999999999999999999999999984 79999999999999999999999999999999999999
Q ss_pred ccccc---hHHHHHHHHhhcceEEEEEEecCCCCCCChhHHHHHHHHHHhCCceEEEEEcChhhHHHHHHHHHHcCcccC
Q 002364 175 EYGRN---GVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGN 251 (930)
Q Consensus 175 ~~g~~---~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~~~~~a~~~g~~~~ 251 (930)
+||+. ..+.+++.+++.|+||++...++.+ ..++..++++|+ +++|+||+++...++..++++++++|+..+
T Consensus 165 ~~g~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~----~~d~~~~l~~i~-~~~~vii~~~~~~~~~~~~~~~~~~gl~~~ 239 (441)
T 1jdp_A 165 KLERNCYFTLEGVHEVFQEEGLHTSIYSFDETK----DLDLEDIVRNIQ-ASERVVIMCASSDTIRSIMLVAHRHGMTSG 239 (441)
T ss_dssp SSSCHHHHHHHHHHHHHHHHTCEEEEEEECTTS----CCCHHHHHHHHH-HHCSEEEEESCHHHHHHHHHHHHHTTCTTT
T ss_pred CcccchHHHHHHHHHHHHhcCcEEEEEEecCCc----ccCHHHHHHHhh-cCCcEEEEecCHHHHHHHHHHHHHcCCCCC
Confidence 99999 9999999999999999988776644 457899999999 899999999999999999999999999888
Q ss_pred CeEEEEeCcchh------cccC-CCCChhhhhccccEEEEEEecCCChhhHHHHHHHhhh-----cCCCCCCCchhHHHh
Q 002364 252 GYVWIATDWLAY------MLDS-ASLPSETLESMQGVLVLRQHIPESDRKKNFLSRWKNL-----TGGSLGMNSYGLYAY 319 (930)
Q Consensus 252 ~~~~i~~~~~~~------~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~-----~~~~~~~~~~~~~~Y 319 (930)
.|+|+.+++... .... ............++.++.++.++.|.+++|.++|+++ |+.+..++.++.++|
T Consensus 240 ~~v~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~g~~~~~~~~p~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~Y 319 (441)
T 1jdp_A 240 DYAFFNIELFNSSSYGDGSWKRGDKHDFEAKQAYSSLQTVTLLRTVKPEFEKFSMEVKSSVEKQGLNMEDYVNMFVEGFH 319 (441)
T ss_dssp TCEEEEECSSCCCSTTTCTTCCSSTTHHHHHHHGGGEEEEEECCCCCHHHHHHHHHHHHHHHTTTCCCCSSCCHHHHHHH
T ss_pred CEEEEEEeccccccccCCCCccCCcccHHHHHHHHhheEEeecCCCCchHHHHHHHHHHHHhhCCCCccchhhhHHHHHH
Confidence 899999884221 1111 0011111234566777777778889999999999876 421113567889999
Q ss_pred HHHHHHHHHHHHHHhcCCcceecCCccccccCCCcccCCCccccCchHHHHHHHHhCcccccccceEEccCCCcccceEE
Q 002364 320 DSVWLLAHAIESFFNQGGKISFSNDSRLKTMEGGNLHLGAMSIFDDGMLLLGNILQSNLVGLTGPLKFNSDRSLIHAAYD 399 (930)
Q Consensus 320 Dav~~la~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~f~G~~G~v~fd~~g~~~~~~~~ 399 (930)
|||+++|+|++++..++.. +.++++|+++|++++|+|++|++.||++|++ ...|+
T Consensus 320 dAv~~~A~Al~~~~~~~~~------------------------~~~~~~l~~~l~~~~f~g~~G~v~fd~~Gd~-~~~~~ 374 (441)
T 1jdp_A 320 DAILLYVLALHEVLRAGYS------------------------KKDGGKIIQQTWNRTFEGIAGQVSIDANGDR-YGDFS 374 (441)
T ss_dssp HHHHHHHHHHHHHHHTTCC------------------------TTCHHHHHHHHSSEEEEETTEEEEECTTSBB-CCEEE
T ss_pred HHHHHHHHHHHHHHHhCCC------------------------CCCHHHHHHHHhCCeeECCccceEECCCCCc-cccEE
Confidence 9999999999998654211 2248899999999999999999999999996 58899
Q ss_pred EEEee---ccceEEEEEEcCCCC
Q 002364 400 IINVI---GTGFRMIGYWSNYSG 419 (930)
Q Consensus 400 I~~~~---~~~~~~vg~w~~~~g 419 (930)
|++++ ++.++.||.|++..+
T Consensus 375 I~~~~~~~~g~~~~VG~~~~~~~ 397 (441)
T 1jdp_A 375 VIAMTDVEAGTQEVIGDYFGKEG 397 (441)
T ss_dssp EEEEEETTTTEEEEEEEEETTTT
T ss_pred EEecccCCCCceEEEEEEcCCCC
Confidence 99996 356899999998764
No 10
>1dp4_A Atrial natriuretic peptide receptor A; periplasmic binding protein fold, dimer, hormone/growth FACT receptor, lyase complex; HET: NAG; 2.00A {Rattus norvegicus} SCOP: c.93.1.1 PDB: 1t34_A* 3a3k_A*
Probab=100.00 E-value=2.6e-46 Score=427.02 Aligned_cols=358 Identities=20% Similarity=0.252 Sum_probs=305.6
Q ss_pred ceEEEEEEeeCC---CcchhhHHH-HHHHHHHHHhcCCCCCCCCEEEEEEecC-----CCChHHHHHHHHHHHhc-CcEE
Q 002364 30 AVVNVGALFTLD---STIGRVAKI-AIEEAVKDVNSNSSILHGTKLNITMQSS-----NCSGFIGMVEALRFMET-DIVA 99 (930)
Q Consensus 30 ~~i~IG~i~~~s---~~~g~~~~~-a~~~Av~~iN~~~~il~g~~l~l~~~D~-----~~~~~~a~~~a~~li~~-~v~a 99 (930)
++|+||+++|++ +..|..... |+++|+|+||+++|+|+|++|+++++|+ +|++..++..+.+++.+ +|.+
T Consensus 1 g~i~IG~l~p~sg~~~~~g~~~~~~a~~~Av~~iN~~ggil~g~~l~~~~~D~~~~p~~c~~~~a~~~a~~~l~~~~v~a 80 (435)
T 1dp4_A 1 SDLTVAVVLPLTNTSYPWSWARVGPAVELALARVKARPDLLPGWTVRMVLGSSENAAGVCSDTAAPLAAVDLKWEHSPAV 80 (435)
T ss_dssp CEEEEEEEECSSCCCSTTCHHHHHHHHHHHHHHHHTCTTSSTTCEEEEEEEECBCTTSSBCTTHHHHHHHHHHHHHCCSE
T ss_pred CceEEEEEccCcCCCCceeHHHHHHHHHHHHHHHHhCCCCCCCceEEEEEecCcCcccccchhhHHHHHHHHHHhcCceE
Confidence 479999999998 355767777 9999999999999999999999999999 56667888888888754 8999
Q ss_pred EEcCCChhHHHHHHHhhccCCCcEEecccCCCCCCC-CCCCceEeecCCchHHHHHHHHHHHhcCccEEEEE------EE
Q 002364 100 IIGPQCSTVAHIVSYVSNELQVPLLSFGVTDPTLSS-LQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVI------FV 172 (930)
Q Consensus 100 iiGp~~s~~~~~v~~~~~~~~iP~is~~a~~~~l~~-~~~p~~~r~~p~~~~~~~ai~~~l~~~~w~~v~ii------~~ 172 (930)
||||.+|..+.+++++++.+++|+|+++++++.+++ .+|||+||+.|++..++.++++++++++|++|++| ++
T Consensus 81 viG~~~S~~~~av~~~~~~~~ip~is~~~~~~~ls~~~~~~~~fr~~p~~~~~~~a~~~~l~~~~w~~v~ii~~~d~~~~ 160 (435)
T 1dp4_A 81 FLGPGCVYSAAPVGRFTAHWRVPLLTAGAPALGIGVKDEYALTTRTGPSHVKLGDFVTALHRRLGWEHQALVLYADRLGD 160 (435)
T ss_dssp EECCCSHHHHHHHHHHHHHHTCCEEESCCCCGGGGCTTTSTTEEECSCCHHHHHHHHHHHHHHHTCCSEEEEEEECCSSS
T ss_pred EECCCChHHHHHHHHHHHhcCCcEEcccccccccCcccccCeEEEecCcHHHHHHHHHHHHHHCCCcEEEEEEEccCCCC
Confidence 999999999999999999999999999999999998 46999999999999999999999999999999999 67
Q ss_pred cCccccchHHHHHHHHhh-cceEEEEEEecCCCCCCChhHHHHHHHHHHhCCceEEEEEcChhhHHHHHHHHHHcCcccC
Q 002364 173 DNEYGRNGVSALNDKLAE-RRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGN 251 (930)
Q Consensus 173 d~~~g~~~~~~l~~~l~~-~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~~~~~a~~~g~~~~ 251 (930)
|++|| ..++.+.+.+.+ .|+||.....++.+ ..|+.+++++|++ ++|+||+++.+.++..++++|+++|+..+
T Consensus 161 ~~~~g-~~~~~~~~~~~~~~g~~v~~~~~~~~~----~~d~~~~l~~i~~-~~~viv~~~~~~~~~~~~~~a~~~g~~~~ 234 (435)
T 1dp4_A 161 DRPCF-FIVEGLYMRVRERLNITVNHQEFVEGD----PDHYPKLLRAVRR-KGRVIYICSSPDAFRNLMLLALNAGLTGE 234 (435)
T ss_dssp CCHHH-HHHHHHHHHHHHHHCCEEEEEEECTTC----GGGHHHHHHHHHH-HCSEEEEESCHHHHHHHHHHHHHTTCCTT
T ss_pred cchHH-HHHHHHHHHHHhhcCeEEEEEEEecCc----hhhHHHHHHHHHh-hCceEEEecChHHHHHHHHHHHHcCCCCC
Confidence 77788 566778888888 99999988766444 7889999999998 89999999999999999999999999877
Q ss_pred CeEEEEeCcchhccc---------C----CCCChhhhhccccEEEEEEecCCChhhHHHHHHHhhhcCC-------CCCC
Q 002364 252 GYVWIATDWLAYMLD---------S----ASLPSETLESMQGVLVLRQHIPESDRKKNFLSRWKNLTGG-------SLGM 311 (930)
Q Consensus 252 ~~~~i~~~~~~~~~~---------~----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~-------~~~~ 311 (930)
+|+||.++++..... . ....+...++++|++++.+..|+++..++|.++|++.++. ...+
T Consensus 235 ~~~~i~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 314 (435)
T 1dp4_A 235 DYVFFHLDVFGQSLKSAQGLVPQKPWERGDGQDRSARQAFQAAKIITYKEPDNPEYLEFLKQLKLLADKKFNFTVEDGLK 314 (435)
T ss_dssp TCEEEEECTTCTTSCSSCTTSCBCTTCCSSSCHHHHHHHGGGEEEEEECCCCSHHHHHHHHHHHHHHHHHHCCCCCCSGG
T ss_pred CEEEEEEecccccccccccccccCCcccCCcchHHHHHHhheeEEEecCCCCChhHHHHHHHHHHHhcCCCCcccccchh
Confidence 799999987654321 0 0011334567899999998888889999999998876520 1126
Q ss_pred CchhHHHhHHHHHHHHHHHHHHhcCCcceecCCccccccCCCcccCCCccccCchHHHHHHHHhCcccccccceEEccCC
Q 002364 312 NSYGLYAYDSVWLLAHAIESFFNQGGKISFSNDSRLKTMEGGNLHLGAMSIFDDGMLLLGNILQSNLVGLTGPLKFNSDR 391 (930)
Q Consensus 312 ~~~~~~~YDav~~la~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~f~G~~G~v~fd~~g 391 (930)
+.++.++||||+++|+|++++..+++. +.++++|+++|++++|+|++|++.||++|
T Consensus 315 ~~~~~~~ydav~~~a~Al~~~~~~~~~------------------------~~~~~~l~~~l~~~~f~g~~G~v~fd~~g 370 (435)
T 1dp4_A 315 NIIPASFHDGLLLYVQAVTETLAQGGT------------------------VTDGENITQRMWNRSFQGVTGYLKIDRNG 370 (435)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHTTCC------------------------TTCHHHHHHTTTTEEEEETTEEEEECTTS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHcCCC------------------------CCCHHHHHHHHhCceeeccceeEEECCCC
Confidence 678999999999999999998754321 12488999999999999999999999999
Q ss_pred CcccceEEEEEe--eccceEEEEEEcCCC
Q 002364 392 SLIHAAYDIINV--IGTGFRMIGYWSNYS 418 (930)
Q Consensus 392 ~~~~~~~~I~~~--~~~~~~~vg~w~~~~ 418 (930)
++. ..|+|+++ .++.++.||.|++..
T Consensus 371 ~~~-~~~~i~~~~~~~g~~~~vg~~~~~~ 398 (435)
T 1dp4_A 371 DRD-TDFSLWDMDPETGAFRVVLNYNGTS 398 (435)
T ss_dssp BBC-CCEEEEEECTTTCCEEEEEEECTTT
T ss_pred Ccc-ceeEEEEecCCCCcEEEEEEecCCC
Confidence 965 79999999 566799999998865
No 11
>3qek_A NMDA glutamate receptor subunit; amino terminal domain, ION channel, NMDA receptor, allosteri modulation, phenylethanolamine, polyamine; HET: NAG BMA; 2.00A {Xenopus laevis} PDB: 3qel_A* 3qem_A* 3q41_A*
Probab=100.00 E-value=6.3e-46 Score=416.03 Aligned_cols=338 Identities=23% Similarity=0.339 Sum_probs=284.3
Q ss_pred CCceEEEEEEeeCCCcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCChHHHHHHHHH-HHhcCcEEEEc----
Q 002364 28 RPAVVNVGALFTLDSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALR-FMETDIVAIIG---- 102 (930)
Q Consensus 28 ~~~~i~IG~i~~~s~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~-li~~~v~aiiG---- 102 (930)
.+++|+||+++|++ ..+.|+++|++++|++++. .|++|+++..|+++|+.+++..+++ |++++|.+|||
T Consensus 2 ~~~~i~IG~i~~~s-----~~~~~~~lAv~~iN~~~~~-~~~~l~~~~~d~~~d~~~a~~~~~~~Li~~~V~aiiG~~~~ 75 (384)
T 3qek_A 2 DPKIVNIGAVLSTK-----KHEQIFREAVNQANKRHFT-RKIQLQATSVTHRPNAIQMALSVCEDLISSQVYAILVSHPP 75 (384)
T ss_dssp CCEEEEEEEEESSH-----HHHHHHHHHHHHHHHHSCC-SSEEEEEEEEECCSSHHHHHHHHHHHTGGGTEEEEEECC--
T ss_pred CceEEEEeEEeeCc-----hHHHHHHHHHHHHhccccC-CceEEEEEEecccCCHHHHHHHHHHHHHHcCceEEEEecCC
Confidence 46789999999998 6799999999999999876 5899999999999999999977665 88889999999
Q ss_pred -CCChhHHHHHHHhhccCCCcEEecccCCCCCCC-CCCCceEeecCCchHHHHHHHHHHHhcCccEEEEEEEcCccccch
Q 002364 103 -PQCSTVAHIVSYVSNELQVPLLSFGVTDPTLSS-LQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNG 180 (930)
Q Consensus 103 -p~~s~~~~~v~~~~~~~~iP~is~~a~~~~l~~-~~~p~~~r~~p~~~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~ 180 (930)
|.||..+.+++++++.+++|+|+++++++.+++ .+|||+||+.|++..++.++++++++++|++|++||+|++||++.
T Consensus 76 ~~~~s~~~~a~~~~~~~~~iP~is~~~~~~~ls~~~~~~~~fr~~~~~~~~~~a~~~~~~~~gw~~v~ii~~d~~~G~~~ 155 (384)
T 3qek_A 76 APTDHLTPTPISYTAGFYRIPVIGLTTRMSIYSDKSIHLSFLRTVPPYSHQALVWFEMMRLFNWNHVILIVSDDHEGRAA 155 (384)
T ss_dssp ------CCHHHHHHHHTTTCCEEESSCCCGGGGCSSSCTTEEESSCCGGGHHHHHHHHHHHTTCCEEEEEEESSHHHHHH
T ss_pred CCccchhHHHHHHHHhcCCCCEEecccCchhccCcccCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCcccHHH
Confidence 678888999999999999999999999999997 678999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcceEEE-----------E----------EEecCCCCCCChhHHHHHHHHHHhCCceEEEEEcChhhHHHH
Q 002364 181 VSALNDKLAERRCRIS-----------Y----------KSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQV 239 (930)
Q Consensus 181 ~~~l~~~l~~~g~~v~-----------~----------~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~~ 239 (930)
.+.+++++++.|+++. + ...++.+ ..|+..+|.+|+++++|+||+++.+.++..+
T Consensus 156 ~~~~~~~~~~~g~~v~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~----~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~ 231 (384)
T 3qek_A 156 QKKLETLLEGKESKSKKRNYENLDQLSYDNKRGPKADKVLQFEPG----TKNLTALLLEAKELEARVIILSASEDDATAV 231 (384)
T ss_dssp HHHHHHHHC--------------CCSCCCCCCCCEEEEEEEECTT----CSCCHHHHHHHHTSSCCEEEEECCHHHHHHH
T ss_pred HHHHHHHHHhccCccccccccccceeeeccccCcccceecccCCc----hhhHHHHHHHHHhcCCcEEEEECCHHHHHHH
Confidence 9999999999987542 1 1122323 6789999999999999999999999999999
Q ss_pred HHHHHHcCcccCCeEEEEeCcchhcccCCCCChhhhhccccEEEEEEecCCChhhHHHHHHHhhhcCCCCCCCchhHHHh
Q 002364 240 FSVAKYLGMMGNGYVWIATDWLAYMLDSASLPSETLESMQGVLVLRQHIPESDRKKNFLSRWKNLTGGSLGMNSYGLYAY 319 (930)
Q Consensus 240 ~~~a~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~Y 319 (930)
+++|+++||++.+|+||+++++... ....+.++|+++++.+.++. .++++|
T Consensus 232 ~~~a~~~g~~~~~~~~i~~~~~~~~-------~~~~~~~~g~lg~~~~~~~~----------------------~~~~~Y 282 (384)
T 3qek_A 232 YKSAAMLDMTGAGYVWLVGEREISG-------SALRYAPDGIIGLQLINGKN----------------------ESAHIS 282 (384)
T ss_dssp HHHHHHTTCSSTTCEEECCSGGGSG-------GGGSSCCTTCEEEEETTTTC----------------------HHHHHH
T ss_pred HHHHHHcCCccCCeEEEEecccccc-------ccccccCCccEEEEEcCCCc----------------------hhHHHH
Confidence 9999999998888999999986532 22346789999999876532 267899
Q ss_pred HHHHHHHHHHHHHHhcCCcceecCCccccccCCCcccC-CCccccCchHHHHHHHHhCcc-cccccceEEccCCCcccce
Q 002364 320 DSVWLLAHAIESFFNQGGKISFSNDSRLKTMEGGNLHL-GAMSIFDDGMLLLGNILQSNL-VGLTGPLKFNSDRSLIHAA 397 (930)
Q Consensus 320 Dav~~la~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~l~~~l~~~~f-~G~~G~v~fd~~g~~~~~~ 397 (930)
|||+++|+|++++..+.... +....| ....+|..+..|.+++.+++| +|++|+++||++|++.+..
T Consensus 283 dAV~~~a~Al~~~~~~~~~~------------~~~~~c~~~~~~~~~~~~l~~~~~~~~f~~G~~G~v~fd~~G~~~~~~ 350 (384)
T 3qek_A 283 DAVAVVAQAIHELFEMENIT------------DPPRGCVGNTNIWKTGPLFKRVLMSSKYPDGVTGRIEFNEDGDRKFAQ 350 (384)
T ss_dssp HHHHHHHHHHHHHHTSSSCC------------CCCSCCTTCCCCCTTHHHHHHHHHTCCEEEETTEEECBCTTSCBCSCC
T ss_pred HHHHHHHHHHHHHHhccCCC------------CCCCccccCCCccccHHHHHHHHhcCCccCCCCcceEECCCCCCCccc
Confidence 99999999999997653211 111123 345688889999999999998 9999999999999987899
Q ss_pred EEEEEeeccceEEEEEEcC
Q 002364 398 YDIINVIGTGFRMIGYWSN 416 (930)
Q Consensus 398 ~~I~~~~~~~~~~vg~w~~ 416 (930)
|+|+|++++++++||+|++
T Consensus 351 ~~I~~~~~~~~~~VG~w~~ 369 (384)
T 3qek_A 351 YSIMNLQNRKLVQVGIFNG 369 (384)
T ss_dssp EEEEEEETTEEEEEEEECS
T ss_pred EEEEEEcCCceEEEEEEeC
Confidence 9999999999999999983
No 12
>3sm9_A Mglur3, metabotropic glutamate receptor 3; structural genomics, structural genomics consortium, SGC, CE membrane, G-protein coupled receptor; HET: Z99; 2.26A {Homo sapiens}
Probab=100.00 E-value=1.3e-45 Score=422.84 Aligned_cols=366 Identities=20% Similarity=0.343 Sum_probs=305.5
Q ss_pred CCCceEEEEEEeeCC------------Cc-chhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCChHHHHHHHHHHH
Q 002364 27 ARPAVVNVGALFTLD------------ST-IGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFM 93 (930)
Q Consensus 27 ~~~~~i~IG~i~~~s------------~~-~g~~~~~a~~~Av~~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li 93 (930)
..+++|.||++||++ .. .|.+...|+++|+||||+++++|||++|+++++|+++++..|++++.+|+
T Consensus 9 ~~~GDi~iGglf~l~~~~~~~~~C~~~~~~~g~~~~~a~~~AieeIN~~~~lLpg~~L~~~i~D~~~~~~~a~~~~~~ll 88 (479)
T 3sm9_A 9 KIEGDLVLGGLFPINEKGTGTEECGRINEDRGIQRLEAMLFAIDEINKDDYLLPGVKLGVHILDTCSRDTYALEQSLEFV 88 (479)
T ss_dssp EECCSEEEEEEECCEEECC-CCSEEEECTTTTHHHHHHHHHHHHHHHHCSSSSTTCCEEEEEEECTTCHHHHHHHHHHHH
T ss_pred ccCCCEEEEEEEEeEECCCCCCCCcccchhhhHHHHHHHHHHHHHHhCCCccCCCCeEeEEEEecCCChHHHHHHHHHHH
Confidence 457899999999996 11 57788999999999999999999999999999999999999999999999
Q ss_pred hc-------------------------CcEEEEcCCChhHHHHHHHhhccCCCcEEecccCCCCCCC-CCCCceEeecCC
Q 002364 94 ET-------------------------DIVAIIGPQCSTVAHIVSYVSNELQVPLLSFGVTDPTLSS-LQYPFFVRTTQS 147 (930)
Q Consensus 94 ~~-------------------------~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~a~~~~l~~-~~~p~~~r~~p~ 147 (930)
++ +|+|||||.+|..+.+++++++.+++|+|++++++|.|++ .+|||+||+.|+
T Consensus 89 ~~~~~~~~~pny~C~~~~~~~~~~~~~~v~aviG~~~S~~s~ava~i~~~~~iP~Is~~a~~~~lsd~~~~p~~fr~~ps 168 (479)
T 3sm9_A 89 RASLTKVDEAEYMCPDGSYAIQENIPLLIAGVIGGSYSSVSIQVANLLRLFQIPQISYASTSAKLSDKSRYDYFARTVPP 168 (479)
T ss_dssp HTCC-----------------------CEEEEECCSSHHHHHHHHHHHGGGTCCEEESSCCCGGGGCTTTTTTEEESSCC
T ss_pred hCCCccCCCCCCccCCCCccccccCCCceEEEECCCCcHHHHHHHHHHhcCCccEECCCcCCccccCcccCCCeEEeCCc
Confidence 74 5999999999999999999999999999999999999998 579999999999
Q ss_pred chHHHHHHHHHHHhcCccEEEEEEEcCccccchHHHHHHHHhhcceEEEEEEecCCCCCCChhHHHHHH-HHHHhCCceE
Q 002364 148 DSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLL-VKVALMESRV 226 (930)
Q Consensus 148 ~~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l-~~l~~~~~~v 226 (930)
|..++.+++++++++||++|++|++|++||+...+.+++++++.|+||++.+.++.. ....++..++ +.++++++|+
T Consensus 169 d~~~~~a~~~ll~~fgw~~V~ii~~dd~~G~~~~~~~~~~~~~~Gi~v~~~~~i~~~--~~~~d~~~~l~~~i~~s~a~v 246 (479)
T 3sm9_A 169 DFYQAKAMAEILRFFNWTYVSTVASEGDYGETGIEAFEQEARLRNISIATAEKVGRS--NIRKSYDSVIRELLQKPNARV 246 (479)
T ss_dssp THHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHHHTTTCEEEEEEEECC----CHHHHHHHHHHHHTCTTCCE
T ss_pred HHHHHHHHHHHHHHCCCeEEEEEEecchhhHHHHHHHHHHHHHCCceEEEEEEcCCC--CChHHHHHHHHHHHhcCCCeE
Confidence 999999999999999999999999999999999999999999999999999988865 4578899999 6688899999
Q ss_pred EEEEcChhhHHHHHHHHHHcCcccCCeEEEEeCcchhcccCCCCChhhhhccccEEEEEEecCCChhhHHHHHH------
Q 002364 227 IVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATDWLAYMLDSASLPSETLESMQGVLVLRQHIPESDRKKNFLSR------ 300 (930)
Q Consensus 227 iil~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~------ 300 (930)
||+++...++..++++++++|+. ++||+++.|...... . ....+.+.|++++.++..+.|.+++|...
T Consensus 247 Ii~~~~~~~~~~l~~~~~~~g~~---~~wI~s~~w~~~~~~--~-~~~~~~~~G~l~~~~~~~~ipgf~~fl~~~~p~~~ 320 (479)
T 3sm9_A 247 VVLFMRSDDSRELIAAASRANAS---FTWVASDGWGAQESI--I-KGSEHVAYGAITLELASQPVRQFDRYFQSLNPYNN 320 (479)
T ss_dssp EEEECCHHHHHHHHHHHHHTTCC---CEEEECTTTTTCHHH--H-TTCTTTTTTCEEEEECCCCCHHHHHHHHTCCTTTC
T ss_pred EEEEcChHHHHHHHHHHHHhCCE---EEEEEechhhcCccc--c-ccccccCceEEEEEeccCCCcchhhHhhccCcCcC
Confidence 99999999999999999999985 899999988653211 0 11235678999999999999988888643
Q ss_pred ---------HhhhcC---CC------------------CCCCchhHHHhHHHHHHHHHHHHHHhcCCcceecCCcccccc
Q 002364 301 ---------WKNLTG---GS------------------LGMNSYGLYAYDSVWLLAHAIESFFNQGGKISFSNDSRLKTM 350 (930)
Q Consensus 301 ---------~~~~~~---~~------------------~~~~~~~~~~YDav~~la~Al~~~~~~~~~~~~~~~~~~~~~ 350 (930)
|+..|. .. .........+||||+++|+||++++.+.... .
T Consensus 321 p~d~~~~~~w~~~f~C~~~~~~~~~~~C~~~~~l~~~~~~~~~~~~~vy~AVyavA~ALh~m~~~~~~~----------~ 390 (479)
T 3sm9_A 321 HRNPWFRDFWEQKFQCSLQNKRNHRRVCDKHLAIDSSNYEQESKIMFVVNAVYAMAHALHKMQRTLCPN----------T 390 (479)
T ss_dssp TTCTTHHHHHHHHHTCBCCC---CSCBCCTTCCCCTTTCCCCTTHHHHHHHHHHHHHHHHHHHHHHSTT----------C
T ss_pred CCCHHHHHHHHHHcCCCCCCCcccccCCCCccccccCccccccchhhHHHHHHHHHHHHHHHHHhhcCC----------C
Confidence 444442 00 0111334689999999999999997631110 0
Q ss_pred CCCcccCCCccccCchHHHH-HHHHhCccccc------cc-ceEEccCCCcccceEEEEEeec--c--ceEEEEEEc
Q 002364 351 EGGNLHLGAMSIFDDGMLLL-GNILQSNLVGL------TG-PLKFNSDRSLIHAAYDIINVIG--T--GFRMIGYWS 415 (930)
Q Consensus 351 ~~~~~~~~~~~~~~~g~~l~-~~l~~~~f~G~------~G-~v~fd~~g~~~~~~~~I~~~~~--~--~~~~vg~w~ 415 (930)
. ..|.....+ ++++|+ ++|++++|.+. +| .+.||++|+ ....|+|+|++. + .+++||.|+
T Consensus 391 ~---~~c~~~~~~-~~~qL~~~~Lk~v~F~~~~~~~~~~g~~v~fd~~G~-~~~~YdI~n~~~~~~~~~~~~VG~~~ 462 (479)
T 3sm9_A 391 T---KLCDAMKIL-DGKKLYKDYLLKINFTAPFNPNKDADSIVKFDTFGD-GMGRYNVFNFQNVGGKYSYLKVGHWA 462 (479)
T ss_dssp S---SCCHHHHSC-CHHHHHHHTGGGCCEECTTC-----CCEECCCTTCB-CCCCEEEEEEEESSSCEEEEEEEEES
T ss_pred C---cCCCCCCCc-ChHHHHHHHhcceeeccccCccccCCCeEEECCCCC-cccceEEEEEEECCCcEEEEEEEEEe
Confidence 1 122222223 388999 99999999998 55 699999999 478999999973 2 368999997
No 13
>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor, neuron, central nerve system, SI protein; HET: NAG GLU; 2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A* 2e4y_A*
Probab=100.00 E-value=3.2e-45 Score=429.13 Aligned_cols=387 Identities=21% Similarity=0.345 Sum_probs=318.5
Q ss_pred CCceEEEEEEeeCCC-------------cchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCChHHHHHHHHHHHh
Q 002364 28 RPAVVNVGALFTLDS-------------TIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFME 94 (930)
Q Consensus 28 ~~~~i~IG~i~~~s~-------------~~g~~~~~a~~~Av~~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~ 94 (930)
.+++|+||+++|++. ..|.....|+++|+|+||+++++|||++|+++++|+++++..|++.+.++++
T Consensus 11 ~~g~i~IG~l~pl~g~~~~~~~C~~~~~~~g~~~~~a~~~AieeIN~~~~llpg~~L~~~i~D~~~~~~~a~~~a~~~l~ 90 (555)
T 2e4u_A 11 IEGDLVLGGLFPINEKGTGTEECGRINEDRGIQRLEAMLFAIDEINKDNYLLPGVKLGVHILDTCSRDTYALEQSLEFVR 90 (555)
T ss_dssp ECCSEEEEEEECCEEECCTTCSEEEECTTTTHHHHHHHHHHHHHHHHCTTSSTTCCEEEEEEECTTCHHHHHHHHHHHHH
T ss_pred cCCCEEEEEEEEeeECCCCCCccccccchhhhHHHHHHHHHHHHHhCCCCCCCCCeEEEEEEECCCChHHHHHHHHHHHh
Confidence 467899999999973 3577888999999999999999999999999999999999999999998883
Q ss_pred -------------------------cCcEEEEcCCChhHHHHHHHhhccCCCcEEecccCCCCCCC-CCCCceEeecCCc
Q 002364 95 -------------------------TDIVAIIGPQCSTVAHIVSYVSNELQVPLLSFGVTDPTLSS-LQYPFFVRTTQSD 148 (930)
Q Consensus 95 -------------------------~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~a~~~~l~~-~~~p~~~r~~p~~ 148 (930)
++|.|||||.+|..+.+++++++.+++|+|+++++++.|++ .+||||||+.|++
T Consensus 91 ~~~~~~~~~ny~C~~~~~~~~~~~~~~v~aviG~~~S~~s~~va~~~~~~~iP~Is~~a~~~~lsd~~~~p~~fr~~p~d 170 (555)
T 2e4u_A 91 ASLTKVDEAEYMCPDGSYAIQENIPLLIAGVIGGSYSSVSIQVANLLRLFQIPQISYASTSAKLSDKSRYDYFARTVPPD 170 (555)
T ss_dssp TTC--------------------CCCCEEEEEECSSHHHHHHHHHHHGGGTCCEEESSCCCGGGGCTTTCTTEEESSCCH
T ss_pred CcCcccCCCCcccCCCccccccccCCceEEEECCCCcHHHHHHHHHHhCcCCceEeCCcCCCccCCcccCCCceeeCCCh
Confidence 47999999999999999999999999999999999999998 5799999999999
Q ss_pred hHHHHHHHHHHHhcCccEEEEEEEcCccccchHHHHHHHHhhcceEEEEEEecCCCCCCChhHHHHHHHHHHh-CCceEE
Q 002364 149 SYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVAL-MESRVI 227 (930)
Q Consensus 149 ~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~-~~~~vi 227 (930)
..|+.++++++++|||++|++|++|++||+...+.+++++++.|+||++.+.++.. .+..++..++.++++ +++|||
T Consensus 171 ~~~~~a~~~ll~~fgw~~V~ii~~d~~~g~~~~~~~~~~~~~~gi~v~~~~~~~~~--~~~~~~~~~l~~i~~~s~a~vI 248 (555)
T 2e4u_A 171 FYQAKAMAEILRFFNWTYVSTVASEGDYGETGIEAFEQEARLRNICIATAEKVGRS--NIRKSYDSVIRELLQKPNARVV 248 (555)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEEESSTTHHHHHHHHHHHHHTTTCEEEEEEEECTT--CCHHHHHHHHHHHHTCTTCCEE
T ss_pred HHHHHHHHHHHHHcCCeEEEEEEeeChHHHHHHHHHHHHHHHCCccEEEEEEeCCC--CChHHHHHHHHHHhccCCCCEE
Confidence 99999999999999999999999999999999999999999999999999888863 347899999999964 789999
Q ss_pred EEEcChhhHHHHHHHHHHcCcccCCeEEEEeCcchhcccCCCCChhhhhccccEEEEEEecCCChhhHH-----------
Q 002364 228 VLHVSPSLGFQVFSVAKYLGMMGNGYVWIATDWLAYMLDSASLPSETLESMQGVLVLRQHIPESDRKKN----------- 296 (930)
Q Consensus 228 il~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~----------- 296 (930)
|+++...++..++++++++|+ +++||+++.|...... .....+.+.|++++.++..+.+.+++
T Consensus 249 i~~~~~~~~~~~~~~~~~~g~---~~~~i~s~~~~~~~~~---~~~~~~~~~G~l~~~~~~~~ipgf~~f~~~~~p~~~p 322 (555)
T 2e4u_A 249 VLFMRSDDSRELIAAANRVNA---SFTWVASDGWGAQESI---VKGSEHVAYGAITLELASHPVRQFDRYFQSLNPYNNH 322 (555)
T ss_dssp EEECCHHHHHHHHHHHHHTTC---CCEEEECTTTTTCGGG---TTTCHHHHTTCEEEEECCCCCHHHHHHHHTCCTTTCT
T ss_pred EEEcCHHHHHHHHHHHHHhcC---CeEEEEeccccccchh---hccchhhcceEEEEEeccCCCCcHHHHHhhCCcccCC
Confidence 999999999999999999987 7899999887654222 01224567899999987655555544
Q ss_pred ----HHHHHhhhcCCC---------------------CCCCchhHHHhHHHHHHHHHHHHHHhcCCcceecCCccccccC
Q 002364 297 ----FLSRWKNLTGGS---------------------LGMNSYGLYAYDSVWLLAHAIESFFNQGGKISFSNDSRLKTME 351 (930)
Q Consensus 297 ----f~~~~~~~~~~~---------------------~~~~~~~~~~YDav~~la~Al~~~~~~~~~~~~~~~~~~~~~~ 351 (930)
|.+.|+..|+.. ..+..++..+||||+++|+||+++..+....
T Consensus 323 ~~~~~~~~w~~~f~c~~~~~~~~~~~C~~~e~l~~~~~~~~~~~~~~YdAVya~A~AL~~~~~~~~~~------------ 390 (555)
T 2e4u_A 323 RNPWFRDFWEQKFQCSLQNKRNHRQVCDKHLAIDSSNYEQESKIMFVVNAVYAMAHALHKMQRTLCPQ------------ 390 (555)
T ss_dssp TCTTHHHHHHHHTTCCCC------CCCCTTCCCCTTTCCCCTTHHHHHHHHHHHHHHHHHHHHHHCTT------------
T ss_pred CCHHHHHHHHHHcCCCCCCCCccCCCCCCccccccccccccccchhhHHHHHHHHHHHHHHHhhhcCC------------
Confidence 445566665310 0144678899999999999999987521100
Q ss_pred CCcccCCCccccCchHHHHH-HHHhCccc------ccccc-eEEccCCCcccceEEEEEee--cc--ceEEEEEEcCCCC
Q 002364 352 GGNLHLGAMSIFDDGMLLLG-NILQSNLV------GLTGP-LKFNSDRSLIHAAYDIINVI--GT--GFRMIGYWSNYSG 419 (930)
Q Consensus 352 ~~~~~~~~~~~~~~g~~l~~-~l~~~~f~------G~~G~-v~fd~~g~~~~~~~~I~~~~--~~--~~~~vg~w~~~~g 419 (930)
....|...... ++++|++ +|++++|+ |++|+ +.||++|++ ...|+|++++ ++ .+++||.|++ .
T Consensus 391 -~~~~~~~~~~~-~~~~l~~~~L~~v~f~~~~~~~g~~G~~v~fd~~Gd~-~~~y~I~~~~~~~g~~~~~~VG~~~~--~ 465 (555)
T 2e4u_A 391 -TTKLCDAMKIL-DGKKLYKEYLLKIQFTAPFNPNKGADSIVKFDTFGDG-MGRYNVFNLQQTGGKYSYLKVGHWAE--T 465 (555)
T ss_dssp -CSSCCGGGTSC-CHHHHHHHHTTCEEECCSSSCCSSSCCEEECCTTSCC-CCCEEEEEEECTTSSCEEEEEEEESS--S
T ss_pred -CCccccccCCC-CcccccHHhHhceeecccccccCCCCCeEEEcCCCCc-cceEEEEEEEecCCcEEEEEEEEecc--e
Confidence 00112222222 4889999 99999999 99998 999999995 5889999996 33 4799999984 3
Q ss_pred CCcCCCcccccCCCCCCccccccceeEeCCCCccCCCccc
Q 002364 420 LSKEPPETLYAQPFNRSSTIQHLHSVIWPGETLSKPRGWV 459 (930)
Q Consensus 420 l~~~~~~~~~~~~~~~~~~~~~l~~i~wp~~~~~~p~~~~ 459 (930)
|.+ +...|.|++ ..+|++.|
T Consensus 466 l~i------------------~~~~I~W~~--~~~P~S~C 485 (555)
T 2e4u_A 466 LSL------------------DVDSIHWSR--NSVPTSQC 485 (555)
T ss_dssp EEC------------------CGGGCCCTT--SSCCCCCS
T ss_pred EEE------------------eccccccCC--CCCcceee
Confidence 332 123588987 57788876
No 14
>3ks9_A Mglur1, metabotropic glutamate receptor 1; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99 NAG; 1.90A {Homo sapiens} SCOP: c.93.1.1 PDB: 1ewk_A* 1ewt_A* 1ewv_A 1isr_A* 1iss_A* 3lmk_A*
Probab=100.00 E-value=1.2e-44 Score=416.71 Aligned_cols=370 Identities=22% Similarity=0.371 Sum_probs=307.5
Q ss_pred CCCCceEEEEEEeeCCCc-----------------chhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCChHHHHHH
Q 002364 26 SARPAVVNVGALFTLDST-----------------IGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVE 88 (930)
Q Consensus 26 ~~~~~~i~IG~i~~~s~~-----------------~g~~~~~a~~~Av~~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~ 88 (930)
...+++|.||++||.+.. .|.+...|+.+||||||+++++|||++|+++++|+|+++..|+++
T Consensus 12 ~~~~GDi~iGglf~vh~~~~~~~~~~~~c~~~~~~~g~~~~~a~~~AieeIN~~~~lLpn~tLg~~i~D~~~~~~~a~~~ 91 (496)
T 3ks9_A 12 ARMDGDVIIGALFSVHHQPPAEKVPERKCGEIREQYGIQRVEAMFHTLDKINADPVLLPNITLGSEIRDSCWHSSVALEQ 91 (496)
T ss_dssp EEECCSEEEEEEECSBCCCCGGGTTTTCCCCBCTTTTHHHHHHHHHHHHHHHTCSSSSTTCCEEEEEEECTTCHHHHHHH
T ss_pred eecCCCEEEEEEEEeEEcCccCCCCCCCCccccchhhHHHHHHHHHHHHHHhCCCCCCCCceEeEEEEEcCCCcHHHHHH
Confidence 456889999999998621 246778999999999999999999999999999999999999999
Q ss_pred HHHHH-----------------------------hcCcEEEEcCCChhHHHHHHHhhccCCCcEEecccCCCCCCC-CCC
Q 002364 89 ALRFM-----------------------------ETDIVAIIGPQCSTVAHIVSYVSNELQVPLLSFGVTDPTLSS-LQY 138 (930)
Q Consensus 89 a~~li-----------------------------~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~a~~~~l~~-~~~ 138 (930)
+.+++ +++|.|||||.+|..+.+++++++.+++|+|++++++|.+++ .+|
T Consensus 92 a~~ll~~~~~s~~~~~~~n~~C~~~~~~~~~~~~~~~v~aviG~~~S~~s~ava~i~~~~~iP~Is~~a~~~~lsd~~~~ 171 (496)
T 3ks9_A 92 SIEFIRDSLISIRDEKDGINRCLPDGQSLPPGRTKKPIAGVIGPGSSSVAIQVQNLLQLFDIPQIAYSATSIDLSDKTLY 171 (496)
T ss_dssp HHHHHSTTC--------------------------CCEEEEECCSSHHHHHHHHHHHGGGTCCEEESSCCCGGGGCTTTC
T ss_pred HHHHHHhhhccccccCCCCccccCcccccccccCCCceEEEECCCccHHHHHHHHHHhhcceeEECCCcCCccccCccCC
Confidence 99998 338999999999999999999999999999999999999998 579
Q ss_pred CceEeecCCchHHHHHHHHHHHhcCccEEEEEEEcCccccchHHHHHHHHhhcceEEEEEEecCCCCCCChhHHHHHHHH
Q 002364 139 PFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVK 218 (930)
Q Consensus 139 p~~~r~~p~~~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~ 218 (930)
||+||+.|+|..|+.+++++++++||+||++|++|++||+...+.+++++++.|+||++.+.++.. .+..++..++.+
T Consensus 172 p~~frt~psd~~~~~ai~~ll~~fgw~~V~li~~dd~~G~~~~~~~~~~~~~~Gi~v~~~~~i~~~--~~~~d~~~~l~~ 249 (496)
T 3ks9_A 172 KYFLRVVPSDTLQARAMLDIVKRYNWTYVSAVHTEGNYGESGMDAFKELAAQEGLSIAHSDKIYSN--AGEKSFDRLLRK 249 (496)
T ss_dssp TTEEESSCCTHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTT--CCHHHHHHHHHH
T ss_pred CceEEecCChHHHHHHHHHHHHHcCCcEEEEEEeccHHHHHHHHHHHHHHHHcCceEEEEEEECCC--CCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999998888754 458899999999
Q ss_pred HHhC--CceEEEEEcChhhHHHHHHHHHHcCcccCCeEEEEeCcchhcccCCCCChhhhhccccEEEEEEecCCChhhHH
Q 002364 219 VALM--ESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATDWLAYMLDSASLPSETLESMQGVLVLRQHIPESDRKKN 296 (930)
Q Consensus 219 l~~~--~~~viil~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 296 (930)
|+++ ++++|++++....+..++++++++|+.+ .++||++++|...... . ......+.|++++.++.++.|.+++
T Consensus 250 i~~~~~~a~vii~~~~~~~~~~l~~~~~~~g~~~-k~~~i~s~~w~~~~~~--~-~~~~~~~~G~l~~~~~~~~ipgf~~ 325 (496)
T 3ks9_A 250 LRERLPKARVVVCFCEGMTVRGLLSAMRRLGVVG-EFSLIGSDGWADRDEV--I-EGYEVEANGGITIKLQSPEVRSFDD 325 (496)
T ss_dssp HHTTTTTTCEEEEECCHHHHHHHHHHHHHHTCCS-CCEEEECTTTTTCHHH--H-TTCHHHHTTCEEEEECCCCCHHHHH
T ss_pred HHhccCceEEEEEecChHHHHHHHHHHHHhCCCC-cEEEEEechhcccccc--c-cccccccCceEEEeccCCcCcchHh
Confidence 9984 7899999999999999999999999853 3689999887643211 0 1233568899999999999999988
Q ss_pred HHHH---------------HhhhcC---CCC---------------------CCCchhHHHhHHHHHHHHHHHHHHhcCC
Q 002364 297 FLSR---------------WKNLTG---GSL---------------------GMNSYGLYAYDSVWLLAHAIESFFNQGG 337 (930)
Q Consensus 297 f~~~---------------~~~~~~---~~~---------------------~~~~~~~~~YDav~~la~Al~~~~~~~~ 337 (930)
|... |+..|. ... .........|+||+++|+||++++.+.+
T Consensus 326 fl~~~~p~~~p~d~~l~~~W~~~f~C~~~~~~~~~~~~~~~C~~~~~l~~~~~~~~~~~~vy~AVyavAhALh~m~~~~~ 405 (496)
T 3ks9_A 326 YFLKLRLDTNTRNPWFPEFWQHRFQCRLPGHLLENPNFKRICTGNESLEENYVQDSKMGFVINAIYAMAHGLQNMHHALC 405 (496)
T ss_dssp HHTTCCTTTCCSCTTHHHHHHHHTTCBCCC-----CCCSSBCCSCCCTTTTCCCCTTHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HhccCCcCCCCCCHHHHHHHHHHcCCCCCCCccccccccCCCCCcccccccccccchHHHHHHHHHHHHHHHHHHHhccC
Confidence 8643 444432 000 0011224699999999999999975321
Q ss_pred cceecCCccccccCCCcccCCCccccCchHHHHHHHHhCcccccccc-eEEccCCCcccceEEEEEeec---c--ceEEE
Q 002364 338 KISFSNDSRLKTMEGGNLHLGAMSIFDDGMLLLGNILQSNLVGLTGP-LKFNSDRSLIHAAYDIINVIG---T--GFRMI 411 (930)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~f~G~~G~-v~fd~~g~~~~~~~~I~~~~~---~--~~~~v 411 (930)
.. ..+ .|....++. +.+|+++|++++|.+.+|+ +.||++|+ ....|+|+|++. + .+++|
T Consensus 406 ~~----------~~~---~c~~~~~~~-~~qL~~~Lk~v~f~~~~g~~v~fd~~gd-~~~~YdI~n~~~~~~~~~~~~~V 470 (496)
T 3ks9_A 406 PG----------HVG---LCDAMKPID-GSKLLDFLIKSSFIGVSGEEVWFDEKGD-APGRYDIMNLQYTEANRYDYVHV 470 (496)
T ss_dssp TT----------CSS---CCGGGSSCC-HHHHHHHHHTCEEECTTSCEEECCTTSC-CCCEEEEEEEEECC--CEEEEEE
T ss_pred CC----------CCC---CCcCCCCCC-HHHHHHHHHhcCCcCCCCCEEEECCCCC-ccceEEEEEEEECCCCCEEEEEE
Confidence 10 011 233333453 8899999999999999996 99999999 578999999973 2 36899
Q ss_pred EEEcC
Q 002364 412 GYWSN 416 (930)
Q Consensus 412 g~w~~ 416 (930)
|.|++
T Consensus 471 G~~~~ 475 (496)
T 3ks9_A 471 GTWHE 475 (496)
T ss_dssp EEEET
T ss_pred EEEeC
Confidence 99973
No 15
>3mq4_A Mglur7, metabotropic glutamate receptor 7; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99; 2.80A {Homo sapiens} SCOP: c.93.1.0 PDB: 2e4z_A*
Probab=100.00 E-value=3.1e-45 Score=420.95 Aligned_cols=369 Identities=23% Similarity=0.391 Sum_probs=280.2
Q ss_pred CCCCceEEEEEEeeCCC-------------cchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCChHHHHHHHHHH
Q 002364 26 SARPAVVNVGALFTLDS-------------TIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRF 92 (930)
Q Consensus 26 ~~~~~~i~IG~i~~~s~-------------~~g~~~~~a~~~Av~~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~l 92 (930)
...+++|+||+++|++. ..|.+...|+++|+||||+++++|||++|+++++|+++++..|++.+.++
T Consensus 11 ~~~~gdi~IG~lf~l~~~~~~~~~C~~~~~~~g~~~~~a~~~AieeIN~~~~lLpn~~L~~~i~D~~~~~~~a~~~a~~l 90 (481)
T 3mq4_A 11 IRIEGDVTLGGLFPVHAKGPSGVPCGDIKRENGIHRLEAMLYALDQINSDPNLLPNVTLGARILDTCSRDTYALEQSLTF 90 (481)
T ss_dssp EEECCSEEEEEEECSBCCC-----CCSBCTTTTHHHHHHHHHHHHHHTTCSSSSSSCCEEEEEEECTTCHHHHHHHHGGG
T ss_pred cccCCCEEEEEEEEceeCCCCCCCCccccchhhHHHHHHHHHHHHHHhCCCCcCCCceEEEEEEeCCCChHHHHHHHHHH
Confidence 34578999999999983 25788899999999999999999999999999999999999999999999
Q ss_pred Hh-----------------------cCcEEEEcCCChhHHHHHHHhhccCCCcEEecccCCCCCCC-CCCCceEeecCCc
Q 002364 93 ME-----------------------TDIVAIIGPQCSTVAHIVSYVSNELQVPLLSFGVTDPTLSS-LQYPFFVRTTQSD 148 (930)
Q Consensus 93 i~-----------------------~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~a~~~~l~~-~~~p~~~r~~p~~ 148 (930)
++ ++|.|||||.+|..+.+++++++.+++|+|++++++|.|++ .+|||+||+.|++
T Consensus 91 l~~~~~~~~pny~C~~~~~~~~~~~~~v~aiiG~~~S~~s~ava~~~~~~~iP~Is~~a~~~~lsd~~~~p~~fr~~psd 170 (481)
T 3mq4_A 91 VQALIQKDTSDVRCTNGEPPVFVKPEKVVGVIGASGSSVSIMVANILRLFQIPQISYASTAPELSDDRRYDFFSRVVPPD 170 (481)
T ss_dssp GGGGSCCCC--------------CCCCEEEEECCSSHHHHHHHHHHHTTTTCCEEESSCCCGGGGCTTTTTTEEESSCCT
T ss_pred HhCCcccCCCCcccCCCCCcccccCCCcEEEEcCCCcHHHHHHHHHHHhCCCCEEccccCCccccCcccCCceEEecCch
Confidence 86 46999999999999999999999999999999999999998 6899999999999
Q ss_pred hHHHHHHHHHHHhcCccEEEEEEEcCccccchHHHHHHHHhh-cceEEEEEEecCCCCCCChh--HHHHHHHHHH-hCCc
Q 002364 149 SYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAE-RRCRISYKSGIPPESGVNTG--YVMDLLVKVA-LMES 224 (930)
Q Consensus 149 ~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~-~g~~v~~~~~~~~~~~~~~~--~~~~~l~~l~-~~~~ 224 (930)
..++.+++++++++||+||++|++|++||+...+.+++.+++ .|+||++.+.++.. .... ++..++.+++ ++++
T Consensus 171 ~~~~~a~~~ll~~fgw~~V~li~~d~~~G~~~~~~~~~~~~~~~Gi~va~~~~i~~~--~~~~~~d~~~~l~~i~~~s~a 248 (481)
T 3mq4_A 171 SFQAQAMVDIVKALGWNYVSTLASEGSYGEKGVESFTQISKEAGGLSIAQSVRIPQE--RKDRTIDFDRIIKQLLDTPNS 248 (481)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEC---CHHHHHHHHHHHHCC---CCCEECCCCCCCCC--------CCSHHHHCCCCC---
T ss_pred HHHHHHHHHHHHHCCCeEEEEEEEcchhHHHHHHHHHHHHHHhCCEEEEEEEEcCCC--CccchHHHHHHHHHHHhcCCC
Confidence 999999999999999999999999999999999999999885 79999988888754 2233 7888999988 5799
Q ss_pred eEEEEEcChhhHHHHHHHHHHcCcccCCeEEEEeCcchhcccCCCCChhhhhccccEEEEEEecCCChhhHHHHHH----
Q 002364 225 RVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATDWLAYMLDSASLPSETLESMQGVLVLRQHIPESDRKKNFLSR---- 300 (930)
Q Consensus 225 ~viil~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~---- 300 (930)
|+||+++...++..++++++++|+.+ .++||+++.|...... . ......+.|.+++.++..+.|.+++|+..
T Consensus 249 ~vIi~~~~~~~~~~l~~~~~~~g~~~-~~~wI~s~~w~~~~~~--~-~~~~~~~~G~l~~~~~~~~ipgf~~fl~~~~p~ 324 (481)
T 3mq4_A 249 RAVVIFANDEDIKQILAAAKRADQVG-HFLWVGSDSWGSKINP--L-HQHEDIAEGAITIQPKRATVEGFDAYFTSRTLE 324 (481)
T ss_dssp -CEEECCCSSHHHHHC-----------CCCEEEC--------------------CCCEEEEECCCCCHHHHHHHHTCCTT
T ss_pred EEEEEEEChHHHHHHHHHHHHccCCc-ceEEEEECcccccccc--c-cccchhhccEEEEecCcCccccHHHHhhcCCcC
Confidence 99999999999999999999999853 3899999988654322 1 12346789999999999999998888653
Q ss_pred -----------HhhhcC---CC---------------C--------CCCchhHHHhHHHHHHHHHHHHHHhcCCcceecC
Q 002364 301 -----------WKNLTG---GS---------------L--------GMNSYGLYAYDSVWLLAHAIESFFNQGGKISFSN 343 (930)
Q Consensus 301 -----------~~~~~~---~~---------------~--------~~~~~~~~~YDav~~la~Al~~~~~~~~~~~~~~ 343 (930)
|+..|. .. . ........+||||+++|+||++++.+.+...
T Consensus 325 ~~p~d~~~~~~w~~~f~C~~~~~~~~~~~~~~~Ct~~e~l~~~~~~~~~~~~~~vy~AVyavA~ALh~m~~~~~~~~--- 401 (481)
T 3mq4_A 325 NNRRNVWFAEYWEENFNCKLTISGSKKEDTDRKCTGQERIGKDSNYEQEGKVQFVIDAVYAMAHALHHMNKDLCADY--- 401 (481)
T ss_dssp TCTTCTTHHHHHHHHHTCCC------------CCCSCCCTTTSSCCCCCTTHHHHHHHHHHHHHHHHHHHHHHCC-----
T ss_pred cCCCCHHHHHHHHHhcCCCCCCccccccccCCCCCCccccCcCCcccccchhhhHHHHHHHHHHHHHHHHHhhCCCC---
Confidence 443332 00 0 0113445799999999999999975321110
Q ss_pred CccccccCCCcccCCCccccCchHHHHHHHHhCccccccc-ceEEccCCCcccceEEEEEeec---c--ceEEEEEEc
Q 002364 344 DSRLKTMEGGNLHLGAMSIFDDGMLLLGNILQSNLVGLTG-PLKFNSDRSLIHAAYDIINVIG---T--GFRMIGYWS 415 (930)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~f~G~~G-~v~fd~~g~~~~~~~~I~~~~~---~--~~~~vg~w~ 415 (930)
. ..|....++ ++.+|+++|++++|.+.+| .+.||++|+ ....|+|+|++. + .+++||.|+
T Consensus 402 -------~---~~c~~~~~~-~~~qL~~~Lk~v~F~~~~G~~v~fd~~Gd-~~~~YdI~n~~~~~~~~~~~~~VG~~~ 467 (481)
T 3mq4_A 402 -------R---GVCPEMEQA-GGKKLLKYIRNVNFNGSAGTPVMFNKNGD-APGRYDIFQYQTTNTSNPGYRLIGQWT 467 (481)
T ss_dssp ------------CCHHHHTS-CHHHHHHHHHTCEEECTTSSEEECCTTSC-CCCEEEEEEEC-----CCCEEEEEEEE
T ss_pred -------C---CCCCCCCCc-CHHHHHHHHhcceeecCCCCEEEECCCCC-CceeEEEEEEEECCCCcEEEEEEEEEc
Confidence 1 123333334 3889999999999999999 599999999 578999999972 2 568999997
No 16
>3i45_A Twin-arginine translocation pathway signal protei; structural genomics; 1.36A {Rhodospirillum rubrum}
Probab=100.00 E-value=8.9e-40 Score=366.74 Aligned_cols=361 Identities=13% Similarity=0.093 Sum_probs=307.2
Q ss_pred CceEEEEEEeeCCCc--chhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCChHHHHHHHHHHHhc-CcEEEEcCCC
Q 002364 29 PAVVNVGALFTLDST--IGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMET-DIVAIIGPQC 105 (930)
Q Consensus 29 ~~~i~IG~i~~~s~~--~g~~~~~a~~~Av~~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~-~v~aiiGp~~ 105 (930)
.++|+||+++|++.. .|.....|+++|++++|++||+++|++++++++|+++++..+.+.+++|+++ +|.+||||.+
T Consensus 3 ~~~i~IG~~~p~sg~~~~g~~~~~g~~~a~~~iN~~ggi~Gg~~i~l~~~D~~~~~~~~~~~~~~li~~~~v~aiiG~~~ 82 (387)
T 3i45_A 3 LEAIRIGEINSYSQIPAFTLPYRNGWQLAVEQINAAGGLLGGRPLEVISRDDGGDPGKAVTAAQELLTRHGVHALAGTFL 82 (387)
T ss_dssp CCCEEEEEEECTTTCHHHHHHHHHHHHHHHHHHHHTTCBTTTBCEEEEEEECTTCHHHHHHHHHHHHHHHCCSEEEECCS
T ss_pred CCCEEEEEeecCCCchhhhHHHHHHHHHHHHHHHhcCCCCCCcceEEEEecCCCCHHHHHHHHHHHHHhcCCEEEECCcc
Confidence 468999999999863 4778899999999999999999855999999999999999999999999986 9999999999
Q ss_pred hhHHHHHHHhhccCCCcEEecccCCCCCCC-CCCCceEeecCCchHHHHHHHHHHHhcCccEEEEEEEcCccccchHHHH
Q 002364 106 STVAHIVSYVSNELQVPLLSFGVTDPTLSS-LQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSAL 184 (930)
Q Consensus 106 s~~~~~v~~~~~~~~iP~is~~a~~~~l~~-~~~p~~~r~~p~~~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l 184 (930)
|..+.++++++++.++|+|++.++++.++. ..+||+||+.|++..++.++++++.+++|++|++|+.|++||+...+.+
T Consensus 83 s~~~~a~~~~~~~~~ip~i~~~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~g~~~vaii~~~~~~g~~~~~~~ 162 (387)
T 3i45_A 83 SHVGLAVSDFARQRKVLFMASEPLTDALTWEKGNRYTYRLRPSTYMQAAMLAAEAAKLPITRWATIAPNYEYGQSAVARF 162 (387)
T ss_dssp HHHHHHHHHHHHHHTCCEEECSCCCGGGTTTTCCTTEEECSCCHHHHHHHHHHHHTTSSCCEEEEECCSSHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCceEEecCCCchhhhhccCCCCEEEeCCChHHHHHHHHHHHHHcCCCeEEEEeCCchHhHHHHHHH
Confidence 999999999999999999999988888875 6789999999999999999999999999999999999999999999999
Q ss_pred HHHHhhc--ceEEEEEEecCCCCCCChhHHHHHHHHHHhCCceEEEEEcChhhHHHHHHHHHHcCcccCCeEEEEeCcch
Q 002364 185 NDKLAER--RCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATDWLA 262 (930)
Q Consensus 185 ~~~l~~~--g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~~~ 262 (930)
++.+++. |++++....++.+ ..|+.+.+.++++.++|+|++++.+.++..++++++++|+... +++.+....
T Consensus 163 ~~~l~~~~~g~~vv~~~~~~~~----~~d~~~~~~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~g~~~~--~~i~~~~~~ 236 (387)
T 3i45_A 163 KELLLAARPEVTFVAEQWPALY----KLDAGPTVQALQQAEPEGLFNVLFGADLPKFVREGRVRGLFAG--RQVVSMLTG 236 (387)
T ss_dssp HHHHHHHCTTCEEEEEECCCTT----CCCHHHHHHHHHHTCCSEEEECCCTTHHHHHHHHHHHHTSSTT--CEEEEEEEE
T ss_pred HHHHHHhCCCcEEEeeecCCCC----CcCHHHHHHHHHhCCCCEEEEcCccHHHHHHHHHHHHcCCCCC--CeEEeecCC
Confidence 9999998 8999888877766 6789999999999999999999999999999999999998533 333332221
Q ss_pred hcccCCCCChhhhhccccEEEEEE-ec-CCChhhHHHHHHHhhhcCCCCCCCchhHHHhHHHHHHHHHHHHHHhcCCcce
Q 002364 263 YMLDSASLPSETLESMQGVLVLRQ-HI-PESDRKKNFLSRWKNLTGGSLGMNSYGLYAYDSVWLLAHAIESFFNQGGKIS 340 (930)
Q Consensus 263 ~~~~~~~~~~~~~~~~~g~~~~~~-~~-~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~YDav~~la~Al~~~~~~~~~~~ 340 (930)
..... .....+..+|++.... +. +++|..++|.++|++++ +..|+.++..+|||++++++|++++..
T Consensus 237 ~~~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~--~~~p~~~~~~~Yda~~~~a~Al~~ag~------ 305 (387)
T 3i45_A 237 EPEYL---NPLKDEAPEGWIVTGYPWYDIDTAPHRAFVEAYRARW--KEDPFVGSLVGYNTLTAMAVAFEKAGG------ 305 (387)
T ss_dssp SHHHH---GGGGGGCCSSCEEEECCGGGCCCHHHHHHHHHHHHHH--SSCCCHHHHHHHHHHHHHHHHHHHHTS------
T ss_pred ChHHH---HHhhhhccCceEEecccccCCCCHHHHHHHHHHHHHH--CCCCCcHHHHHHHHHHHHHHHHHHhCC------
Confidence 11000 0112235678776533 33 47889999999999999 567888999999999999999999731
Q ss_pred ecCCccccccCCCcccCCCccccCchHHHHHHHHhCcccccccceEEccCCCcccceEEEEEee-ccceEEEEEEcCCCC
Q 002364 341 FSNDSRLKTMEGGNLHLGAMSIFDDGMLLLGNILQSNLVGLTGPLKFNSDRSLIHAAYDIINVI-GTGFRMIGYWSNYSG 419 (930)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~f~G~~G~v~fd~~g~~~~~~~~I~~~~-~~~~~~vg~w~~~~g 419 (930)
.+++.|.++|++++|+|++|+++||+++++......|.+++ +++...++.|....|
T Consensus 306 -----------------------~~~~~v~~al~~~~~~g~~G~i~f~~~~~~~~~~~~i~~~~~~~g~~~i~~w~~~~~ 362 (387)
T 3i45_A 306 -----------------------TESETLVETLKDMAFSTPMGPLSFRASDHQSTMGAWVGRTALRDGKGVMVDWRYVDG 362 (387)
T ss_dssp -----------------------CCHHHHHHHTTTCEEEETTEEEEBCTTTCBBCCCEEEEEEEEETTEEEEEEEEEECG
T ss_pred -----------------------CCHHHHHHHHhcCCCcCCCCCeEEcCCCCccccceeEEEEEeeCCceeEEeeEEeCc
Confidence 13899999999999999999999998555567777888876 667899999999998
Q ss_pred CCcCCCcccc
Q 002364 420 LSKEPPETLY 429 (930)
Q Consensus 420 l~~~~~~~~~ 429 (930)
..+.+++..+
T Consensus 363 ~~~~p~~~~~ 372 (387)
T 3i45_A 363 GSVLPPPEVV 372 (387)
T ss_dssp GGGSCCHHHH
T ss_pred hhcCCCHHHH
Confidence 8877775543
No 17
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}
Probab=100.00 E-value=9e-40 Score=370.76 Aligned_cols=351 Identities=13% Similarity=0.036 Sum_probs=288.5
Q ss_pred CCCceEEEEEEeeCCCc---chhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCC-CChHHHHHHHHHHHh-cCcEEEE
Q 002364 27 ARPAVVNVGALFTLDST---IGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSN-CSGFIGMVEALRFME-TDIVAII 101 (930)
Q Consensus 27 ~~~~~i~IG~i~~~s~~---~g~~~~~a~~~Av~~iN~~~~il~g~~l~l~~~D~~-~~~~~a~~~a~~li~-~~v~aii 101 (930)
+.+++|+||+++|++.. .|.....|+++|+++||++||++ |++|+++++|++ |++..++..+++|++ ++|.+||
T Consensus 10 ~~~~~i~IG~~~plsG~~a~~g~~~~~g~~lA~~~iN~~ggi~-G~~i~l~~~D~~~~~~~~a~~~a~~li~~~~v~aii 88 (419)
T 3h5l_A 10 QSSDPVVIGCPAPLTGIVAADGIEFQRGIQMAADEINAVGGIL-GRPIELVFADTQSKGVDVVIQSAQRLIDRDNASALI 88 (419)
T ss_dssp ---CCEEEEEEECCSSTTHHHHHHHHHHHHHHHHHHHTTTSBT-TBCEEEEEEECTTCCHHHHHHHHHHHHHTTCCSEEE
T ss_pred ccCCCEEEEEeecCCCcccccCHHHHHHHHHHHHHHHhcCCcC-ceEEEEEEccCCCCCHHHHHHHHHHHhhhcCCeEEE
Confidence 34578999999999854 48899999999999999999996 999999999998 699999999999999 5999999
Q ss_pred cCCChhHHHHHHHhhccCCCcEEecccCCCCCC-----C-CCCCceEeecCCchHHHHHHHHHHHhc--------CccEE
Q 002364 102 GPQCSTVAHIVSYVSNELQVPLLSFGVTDPTLS-----S-LQYPFFVRTTQSDSYQMTAVAEMVSYY--------GWNAV 167 (930)
Q Consensus 102 Gp~~s~~~~~v~~~~~~~~iP~is~~a~~~~l~-----~-~~~p~~~r~~p~~~~~~~ai~~~l~~~--------~w~~v 167 (930)
||.+|..+.+++++++++++|+|+++ +.+.++ + ..|+|+||+.|++..++.+++++++++ +|++|
T Consensus 89 G~~~s~~~~a~~~~~~~~~ip~i~~~-~~~~~~~~~~~~~~~~~~~f~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 167 (419)
T 3h5l_A 89 AGYNLENGTALHDVAADAGVIAMHAN-TVAVHDEMVKSDPDRYWGTFQYDPPETLYGGGFLKFLKDIEDNGEFSRPNNKI 167 (419)
T ss_dssp CSCCSSCSCHHHHHHHHHTCEEEECC-CCHHHHHHHHHCTTTCTTEEESSCCTHHHHHHHHHHHHHHHHTTSCCCSSSEE
T ss_pred ccccchhHHHhHHHHHHcCCeEEEcC-cchhhhhhhhcCcccCceEEEeCCchHHHHHHHHHHHHHHHhhccccCCCCEE
Confidence 99999999999999999999999964 333322 2 468999999999999999999999875 89999
Q ss_pred EEEEEcCccccchHHHHHHHHhhcceEEEEEEecCCCCCCChhHHHHHHHHHHhCCceEEEEEcC-hhhHHHHHHHHHHc
Q 002364 168 SVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVS-PSLGFQVFSVAKYL 246 (930)
Q Consensus 168 ~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~-~~~~~~~~~~a~~~ 246 (930)
++|+.|++||+...+.+++.+++.|++|+..+.++.+ ..|+..++.+|++.++|+|++.+. +.++..+++++++.
T Consensus 168 ail~~~~~~g~~~~~~~~~~~~~~g~~vv~~~~~~~~----~~d~~~~l~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~~ 243 (419)
T 3h5l_A 168 AIITGPGIYSVNIANAIRDGAGEYGYDVSLFETVAIP----VSDWGPTLAKLRADPPAVIVVTHFYPQDQALFMNQFMTD 243 (419)
T ss_dssp EEEECSSHHHHHHHHHHHHHGGGGTCEEEEEEECCSS----CSCCHHHHHHHHHSCCSEEEECCCCHHHHHHHHHHHTTS
T ss_pred EEEEcCcchhHHHHHHHHHHHHHcCCeEEEEecCCCC----CccHHHHHHHHHhcCCCEEEEccccCchHHHHHHHHHHc
Confidence 9999999999999999999999999999998888876 789999999999999999999865 57899999999999
Q ss_pred CcccCCeEEEEeCcchhcccCCCCChhhhhccccEEEEEEe-cCCChhhHHHHHHHhhhcCCCCCCC-chhHHHhHHHHH
Q 002364 247 GMMGNGYVWIATDWLAYMLDSASLPSETLESMQGVLVLRQH-IPESDRKKNFLSRWKNLTGGSLGMN-SYGLYAYDSVWL 324 (930)
Q Consensus 247 g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~-~~~~~~YDav~~ 324 (930)
|+ ...|+.++++...... ....+..+|++...++ .++++..++|.++|+++| +..+. .++..+|||+++
T Consensus 244 g~---~~~~~~~~~~~~~~~~----~~~g~~~~G~~~~~~~~~~~~~~~~~f~~~~~~~~--g~~p~~~~a~~~Yda~~~ 314 (419)
T 3h5l_A 244 PT---NSLVYLQYGASLAAFR----DIAGDNSVGVTYATVLGTLQDEMGDAFAKAYKERY--GDLSSTASGCQTYSALYA 314 (419)
T ss_dssp CC---SCEEEECSGGGSHHHH----HHHGGGGTTCEEEESSCCCSSHHHHHHHHHHHHHH--CTTSCHHHHHHHHHHHHH
T ss_pred CC---CceEEecCCCCcHHHH----HhhhhhcCceEEeecCCCCCCHHHHHHHHHHHHHh--CCCCCcchhHHHHHHHHH
Confidence 98 3457776655432111 2334567888766554 346788999999999999 34444 689999999999
Q ss_pred HHHHHHHHHhcCCcceecCCccccccCCCcccCCCccccCchHHHHHHHHhCcccccccceEEccCCCcc----------
Q 002364 325 LAHAIESFFNQGGKISFSNDSRLKTMEGGNLHLGAMSIFDDGMLLLGNILQSNLVGLTGPLKFNSDRSLI---------- 394 (930)
Q Consensus 325 la~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~f~G~~G~v~fd~~g~~~---------- 394 (930)
+++|++++..... .+.+.+++.|.++|++++|+|++|+++||++|+..
T Consensus 315 ~~~a~~~a~~~~~----------------------~g~~~~~~~l~~al~~~~~~g~~G~i~f~~~g~~~~~~~~~~~~~ 372 (419)
T 3h5l_A 315 YSIAAALAGGPGA----------------------PYDDVQNKAVADRLRSLIFRGPVGTMRFHADTQSAWSYPTETNDP 372 (419)
T ss_dssp HHHHHHHTTSCCC----------------------TTCHHHHHHHHHHHHHCEEEETTEEEEBCTTTCBBCEETTTCSCT
T ss_pred HHHHHHHhcCCcc----------------------CCCccCHHHHHHHHHhCCcccCceEEEECCCCCccccccCccCCc
Confidence 9999998643210 01122488999999999999999999999999832
Q ss_pred --cceEEEEEeeccceEEEEEE
Q 002364 395 --HAAYDIINVIGTGFRMIGYW 414 (930)
Q Consensus 395 --~~~~~I~~~~~~~~~~vg~w 414 (930)
...+.|+++++++++.+-.|
T Consensus 373 ~~~~~~~i~q~q~g~~~~~~V~ 394 (419)
T 3h5l_A 373 SLGMPHIFSQIFDKAEDGVLIA 394 (419)
T ss_dssp TSSEECEEEECCCTTSCCEEEE
T ss_pred cccCCceEEEeeCCceeeEEEC
Confidence 23456888888777333345
No 18
>3qel_B Glutamate [NMDA] receptor subunit epsilon-2; ION channel, allosteric modulation, phenylethanolamine, N-glycosylation, extracellular; HET: NAG BMA MAN FUC QEL; 2.60A {Rattus norvegicus} PDB: 3qem_B* 3jpw_A* 3jpy_A*
Probab=100.00 E-value=8.2e-40 Score=360.74 Aligned_cols=340 Identities=15% Similarity=0.241 Sum_probs=261.8
Q ss_pred CceEEEEEEeeCCCcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEE-ecCCCChHHHHHHHHHHHhc-CcEEEEc-CCC
Q 002364 29 PAVVNVGALFTLDSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITM-QSSNCSGFIGMVEALRFMET-DIVAIIG-PQC 105 (930)
Q Consensus 29 ~~~i~IG~i~~~s~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~l~~-~D~~~~~~~a~~~a~~li~~-~v~aiiG-p~~ 105 (930)
+..+.||++|..++. +.+++-|++..|.-.. ..++..++ +-+.+||..+...+|+++.. +|.|||| |.+
T Consensus 2 ~~~~~v~~~~~~~~~-----~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~dp~~~~~~~C~~l~~~~V~aiIgg~~s 73 (364)
T 3qel_B 2 PPSIGIAVILVGTSD-----EVAIKDAHEKDDFHHL---SVVPRVELVAMNETDPKSIITRICDLMSDRKIQGVVFADDT 73 (364)
T ss_dssp CCEEEEEEEEESSCC-----HHHHTC---------C---CSEEEEEEEEECCCSHHHHHHHHHHHHHHSCEEEEEEEESS
T ss_pred CCceEEEEEEcccch-----hhhhccccCccccccC---CccceEEEEEecCCCHHHHHHHHHHHHHhCCeEEEEecCCC
Confidence 347999999976653 8899999999985431 35777654 45677999999999999976 7988875 555
Q ss_pred hhHHHH--HHHhhccCCCcEEecccCCC-CCCC-CCCCceEeecCCchHHHHHHHHHHHhcCccEEEEEEEcCccccchH
Q 002364 106 STVAHI--VSYVSNELQVPLLSFGVTDP-TLSS-LQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGV 181 (930)
Q Consensus 106 s~~~~~--v~~~~~~~~iP~is~~a~~~-~l~~-~~~p~~~r~~p~~~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~ 181 (930)
+..+.+ ++.+++.++||+||+++++| .+++ .+||||||+.|+|..|+.++++++++|||++|++||+|+ .+.
T Consensus 74 ~~~a~a~~v~~i~~~~~iP~IS~~at~~~~lsd~~~~p~f~Rt~psd~~q~~ai~~ll~~fgW~~V~iI~~d~----~g~ 149 (364)
T 3qel_B 74 DQEAIAQILDFISAQTLTPILGIHGGSSMIMADKDESSMFFQFGPSIEQQASVMLNIMEEYDWYIFSIVTTYF----PGY 149 (364)
T ss_dssp CCTHHHHHHHHHHHHHTCCEEEEEGGGGSCCSSCCTTCCEEESSCCHHHHHHHHHHHHHHTTCCEEEEEEESC----TTH
T ss_pred CchHHHHHHHHHHhccCCCEEEeecCCCCcCCCcccCceEEEcCCChHHHHHHHHHHHHHCCCeEEEEEEeCC----ccH
Confidence 544544 89999999999999999998 8998 579999999999999999999999999999999999884 345
Q ss_pred HHHHHHHhhc--c--eEEEEEEecCCCCCCChhHHHHHH-HHHHhCCceEEEEEcChhhHHHHHHHHHHcCcccCCeEEE
Q 002364 182 SALNDKLAER--R--CRISYKSGIPPESGVNTGYVMDLL-VKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWI 256 (930)
Q Consensus 182 ~~l~~~l~~~--g--~~v~~~~~~~~~~~~~~~~~~~~l-~~l~~~~~~viil~~~~~~~~~~~~~a~~~g~~~~~~~~i 256 (930)
+.+.+.+++. | +|+.+...++.. .+..++...+ ++++++++++||++++.+.+..++++|.++||++++|+||
T Consensus 150 ~~~~~~l~~~~~~~~ici~~~~~i~~~--~~~~~~~~~l~~~i~~~~a~ViIv~~~~~~~~~ll~~a~~~g~~~~~y~wI 227 (364)
T 3qel_B 150 QDFVNKIRSTIENSFVGWELEEVLLLD--MSLDDGDSKIQNQLKKLQSPIILLYCTKEEATYIFEVANSVGLTGYGYTWI 227 (364)
T ss_dssp HHHHHHHHHHHHTCSSCCEEEEEEEEC--TTSCSSSCHHHHHHTTCCCSEEEEESCHHHHHHHHHHHHTTTCSSTTCEEE
T ss_pred HHHHHHHHHHhhccccceEEEEEEccC--CCcccHHHHHHHHHHccCCcEEEEEcCHHHHHHHHHHHHHcCCCCCCeEEE
Confidence 5666666654 4 377666555433 2355677788 6899999999999999999999999999999999999999
Q ss_pred EeCcchhcccCCCCChhhhhccccEEEEEEecCCChhhHHHHHHHhhhcCCCCCCCchhHHHhHHHHHHHHHHHHHHhcC
Q 002364 257 ATDWLAYMLDSASLPSETLESMQGVLVLRQHIPESDRKKNFLSRWKNLTGGSLGMNSYGLYAYDSVWLLAHAIESFFNQG 336 (930)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~YDav~~la~Al~~~~~~~ 336 (930)
+++++....+. .+ .+...|+++++++. |+. .+.+++||||+++|+|++++..+.
T Consensus 228 ~t~~~~~~~~~--~~---~~~~~g~~~~~~~~------------W~~---------~~~~~~yDaV~~~A~A~~~~~~~~ 281 (364)
T 3qel_B 228 VPSLVAGDTDT--VP---SEFPTGLISVSYDE------------WDY---------GLPARVRDGIAIITTAASDMLSEH 281 (364)
T ss_dssp ECHHHHCSTTC--CC---TTSCTTCEECCBCT------------TTS---------CHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred EecccccCccc--cc---ccCCCceEEEeecc------------chh---------hHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99876433332 11 24567888877643 332 246789999999999999987653
Q ss_pred CcceecCCccccccCCCcccCCCc--cccCchHHHHHHHHhCcccccccceEEccCCCcccceEEEEEee-ccceEEEEE
Q 002364 337 GKISFSNDSRLKTMEGGNLHLGAM--SIFDDGMLLLGNILQSNLVGLTGPLKFNSDRSLIHAAYDIINVI-GTGFRMIGY 413 (930)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~l~~~l~~~~f~G~~G~v~fd~~g~~~~~~~~I~~~~-~~~~~~vg~ 413 (930)
+..+ .....|... .+|.+|..|+++|++++|+|+ +++||++|+|.++.|+|+|++ +.++++||+
T Consensus 282 ~~i~-----------~~~~~C~~~~~~~~~~G~~l~~~l~~v~f~Gl--~i~F~~~G~~~~~~~~Iinl~~~~~~~~VG~ 348 (364)
T 3qel_B 282 SFIP-----------EPKSSCYNTHEKRIYQSNMLNRYLINVTFEGR--DLSFSEDGYQMHPKLVIILLNKERKWERVGK 348 (364)
T ss_dssp SCCC-----------CCCSCSTTTTTGGGGCCSTTHHHHTCCEETTE--ECCBCTTSSBSSCCEEEEEECTTSCEEEEEE
T ss_pred CCCC-----------CCCCCCCCCCCCccCCHHHHHHHHhhceEeCc--eEEECCCCCcccceEEEEEEcCCCCcEEEEE
Confidence 3321 112235444 468889999999999999998 899999999999999999998 688999999
Q ss_pred EcCCCCCCc
Q 002364 414 WSNYSGLSK 422 (930)
Q Consensus 414 w~~~~gl~~ 422 (930)
|++ .+|.+
T Consensus 349 W~~-~~L~~ 356 (364)
T 3qel_B 349 WKD-KSLQM 356 (364)
T ss_dssp ECS-SCEEE
T ss_pred ECC-CeEEe
Confidence 984 44543
No 19
>4f06_A Extracellular ligand-binding receptor; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: MSE PHB; 1.30A {Rhodopseudomonas palustris} PDB: 4evs_A*
Probab=100.00 E-value=5.2e-39 Score=357.75 Aligned_cols=340 Identities=15% Similarity=0.176 Sum_probs=292.4
Q ss_pred CceEEEEEEeeCCC---cchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCC-ChHHHHHHHHHHHhc-CcEEEEcC
Q 002364 29 PAVVNVGALFTLDS---TIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNC-SGFIGMVEALRFMET-DIVAIIGP 103 (930)
Q Consensus 29 ~~~i~IG~i~~~s~---~~g~~~~~a~~~Av~~iN~~~~il~g~~l~l~~~D~~~-~~~~a~~~a~~li~~-~v~aiiGp 103 (930)
.++|+||+++|+|. .+|.....|+++|++++| +|+ .|++|+++++|+++ +|..++..+.+|+++ +|.+||||
T Consensus 3 Ad~IkIG~~~plSG~~a~~G~~~~~g~~la~~~~n--ggi-~G~~ielv~~D~~~~~p~~a~~~a~~Li~~d~V~aiiG~ 79 (371)
T 4f06_A 3 ADTIKVGVIGTMSGPYALFGKNYKMGIDAWVAEHG--NKV-AGHTVEFVYRDEVSPNPAQSKALAQELIVKEKVQYLAGL 79 (371)
T ss_dssp -CEEEEEEEECCSSTTHHHHHHHHHHHHHHHHHHC--SEE-TTEEEEEEEEECCSSCHHHHHHHHHHHHHTSCCSEEEEC
T ss_pred CCcEEEEEEeCCcCchHHhHHHHHHHHHHHHHHhC--CCC-CCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEEec
Confidence 46899999999984 458899999999999998 677 59999999999986 899999999999976 89999999
Q ss_pred CChhHHHHHHHhhccCCCcEEecccCCCCCCCCCCCceEeecCCchHHHHHHHHHHHhcCccEEEEEEEcCccccchHHH
Q 002364 104 QCSTVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSA 183 (930)
Q Consensus 104 ~~s~~~~~v~~~~~~~~iP~is~~a~~~~l~~~~~p~~~r~~p~~~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~ 183 (930)
.+|..+.++++++++.++|+|+++++++.++.. .||+||+.+++..++.+++++++..+|+++++|++|++||+...+.
T Consensus 80 ~~S~~~~a~~~~~~~~~vp~i~~~a~~~~~~~~-~~~~fr~~~~~~~~~~~~~~~~~~~g~k~vaii~~~~~~g~~~~~~ 158 (371)
T 4f06_A 80 YFTPNAMAVAPLLQEAKVPMVVMNAATSSITEK-SPYIVRTSFTMFQNTVPAAKVAKQKGATKVAIAVSDYGPGIDAETA 158 (371)
T ss_dssp CSHHHHHHHGGGHHHHTCCEEESSCCCGGGGGG-CTTEEESSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHH
T ss_pred ccccchHHHHHHHHhhcCCccccccccchhccc-CCcceecccchhhhhhhhhhhhhhcCceEEEEEcCCcccchhHHHH
Confidence 999999999999999999999999998888753 5999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcceEEEEEEecCCCCCCChhHHHHHHHHHHhCCceEEEEEcC-hhhHHHHHHHHHHcCcccCCeEEEEeCcch
Q 002364 184 LNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVS-PSLGFQVFSVAKYLGMMGNGYVWIATDWLA 262 (930)
Q Consensus 184 l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~-~~~~~~~~~~a~~~g~~~~~~~~i~~~~~~ 262 (930)
+++.+++.|++|+..+.++.+ .+|+.+++.+|+++++|+|++... +..+..+++++++.|+...++.++.+....
T Consensus 159 ~~~~~~~~g~~vv~~~~~~~~----~~d~~~~l~~i~~~~pd~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 234 (371)
T 4f06_A 159 FKKTFEAEGGKVVEAVRMPLS----TTDFGPIMQRIKNSGADMIFTFLPAGPPTLGFVKAYIDNGLKAGGVKLMSTGDVV 234 (371)
T ss_dssp HHHHHHHTTCEEEEEEEECTT----CCCCHHHHHHHHHHTCSEEEEECCTTHHHHHHHHHHHHTTTTTTTCEEEEEGGGG
T ss_pred HHHHHHhcCCceEEEEecCcc----cccHHHHHHHHHhcCCCEEEEEeccCchhhHHHHHHHHhhhhccCcEEEEecccC
Confidence 999999999999999999977 789999999999999999988765 467888999999999977666666665433
Q ss_pred hcccCCCCChhhhhccccEEEEEEecC--CChhhHHHHHHHhhhcCCCCCCCchhHHHhHHHHHHHHHHHHHHhcCCcce
Q 002364 263 YMLDSASLPSETLESMQGVLVLRQHIP--ESDRKKNFLSRWKNLTGGSLGMNSYGLYAYDSVWLLAHAIESFFNQGGKIS 340 (930)
Q Consensus 263 ~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~f~~~~~~~~~~~~~~~~~~~~~YDav~~la~Al~~~~~~~~~~~ 340 (930)
..... ....+...|++...++.+ ++|..++|.++|++++.....++.++..+|||++++++|+++.. ++
T Consensus 235 ~~~~~----~~~~~~~~g~~~~~~~~~~~~~p~~~~f~~~~~~~~~~~~~~~~~a~~~Yda~~~l~~Ai~~~a---g~-- 305 (371)
T 4f06_A 235 TEPDL----PNIGEAGLGILSTYHYAVSHDSPENKAFLALLQKGGAKLDEVTMTSVAAYDGARLIYKMIEATS---GK-- 305 (371)
T ss_dssp CGGGH----HHHCGGGTTCEEEESCCTTCCSHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHHHHHTT---TS--
T ss_pred CHHHH----HhcccccCceEEeeccccCCCChhHHHHHHHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHhc---CC--
Confidence 22111 234466788888877654 57889999999999883234578899999999999999999731 11
Q ss_pred ecCCccccccCCCcccCCCccccCchHHHHHHHHhCcccccccceEEccCCCcccceEEEEEee--ccce
Q 002364 341 FSNDSRLKTMEGGNLHLGAMSIFDDGMLLLGNILQSNLVGLTGPLKFNSDRSLIHAAYDIINVI--GTGF 408 (930)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~f~G~~G~v~fd~~g~~~~~~~~I~~~~--~~~~ 408 (930)
.+++.++++|++++|+|++|+++||++++.....+.|.+++ ++++
T Consensus 306 -----------------------~d~~~v~~al~~~~~~~~~G~i~fd~~~~~~~~~~~i~~v~~~dGk~ 352 (371)
T 4f06_A 306 -----------------------SDPDKAIAAVKGMKWVSPRGEVSIDPETRHITQNVYLREVEKVDGKL 352 (371)
T ss_dssp -----------------------CCHHHHHHHHTTCEEEETTEEEEECTTTCBEEEEEEEEEEEEETTEE
T ss_pred -----------------------CCHHHHHHHHhCCCeeCCcEEEEEcCCCCcccCCEEEEEEEecCCEE
Confidence 14899999999999999999999998887677788888887 4554
No 20
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A
Probab=100.00 E-value=2.6e-38 Score=350.78 Aligned_cols=344 Identities=16% Similarity=0.149 Sum_probs=299.0
Q ss_pred ceEEEEEEeeCCC---cchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCh
Q 002364 30 AVVNVGALFTLDS---TIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCS 106 (930)
Q Consensus 30 ~~i~IG~i~~~s~---~~g~~~~~a~~~Av~~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~s 106 (930)
++|+||+++|++. ..|.....|+++|++++|++||+ +|+++++++.|+++++..+.+.+++|++++|.+||||.++
T Consensus 1 ~~i~IG~~~p~sg~~~~~g~~~~~g~~~a~~~iN~~ggi-~G~~~~l~~~d~~~~~~~~~~~~~~l~~~~v~~iig~~~s 79 (356)
T 3ipc_A 1 MDVVIAVGAPLTGPNAAFGAQIQKGAEQAAKDINAAGGI-NGEQIKIVLGDDVSDPKQGISVANKFVADGVKFVVGHANS 79 (356)
T ss_dssp CCEEEEEEECCSSTTHHHHHHHHHHHHHHHHHHHHTTCB-TTBCEEEEEEECTTCHHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred CeEEEEEeeCCCCcchhhCHHHHHHHHHHHHHHHhcCCC-CCeEEEEEEecCCCCHHHHHHHHHHHHHCCCcEEEcCCCc
Confidence 3799999999984 35788999999999999999999 6999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhhccCCCcEEecccCCCCCCCCCCCceEeecCCchHHHHHHHHHH-HhcCccEEEEEEEcCccccchHHHHH
Q 002364 107 TVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMV-SYYGWNAVSVIFVDNEYGRNGVSALN 185 (930)
Q Consensus 107 ~~~~~v~~~~~~~~iP~is~~a~~~~l~~~~~p~~~r~~p~~~~~~~ai~~~l-~~~~w~~v~ii~~d~~~g~~~~~~l~ 185 (930)
..+.++++++.+.++|+|++.++++.+++..+|++||+.|++..++.++++++ +++||++|++|+.+++||+...+.++
T Consensus 80 ~~~~~~~~~~~~~~ip~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~iaii~~~~~~~~~~~~~~~ 159 (356)
T 3ipc_A 80 GVSIPASEVYAENGILEITPAATNPVFTERGLWNTFRTCGRDDQQGGIAGKYLADHFKDAKVAIIHDKTPYGQGLADETK 159 (356)
T ss_dssp HHHHHHHHHHHTTTCEEEESSCCCGGGGSSCCTTEEESSCCHHHHHHHHHHHHHHHCTTCCEEEEECSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCeEEecCCCCcHhhcCCCCcEEEecCChHHHHHHHHHHHHHhcCCCEEEEEeCCChHHHHHHHHHH
Confidence 99999999999999999999999988887778999999999999999999965 56799999999999999999999999
Q ss_pred HHHhhcceEEEEEEecCCCCCCChhHHHHHHHHHHhCCceEEEEEcChhhHHHHHHHHHHcCcccCCeEEEEeCcchhcc
Q 002364 186 DKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATDWLAYML 265 (930)
Q Consensus 186 ~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~~~~~~ 265 (930)
+++++.|+++.....++.+ ..++...++++++.++++|+++++...+..+++++++.|+..+ |++++++....
T Consensus 160 ~~l~~~g~~v~~~~~~~~~----~~d~~~~~~~l~~~~~d~v~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~~~~~~ 232 (356)
T 3ipc_A 160 KAANAAGVTEVMYEGVNVG----DKDFSALISKMKEAGVSIIYWGGLHTEAGLIIRQAADQGLKAK---LVSGDGIVSNE 232 (356)
T ss_dssp HHHHHTTCCCSEEEECCTT----CCCCHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHTCCCE---EEECGGGCSHH
T ss_pred HHHHHcCCEEEEEEeeCCC----CCCHHHHHHHHHhcCCCEEEEccCchHHHHHHHHHHHCCCCCc---EEEeccccCHH
Confidence 9999999998877777765 6788899999999999999999999999999999999998643 77766544321
Q ss_pred cCCCCChhhhhccccEEEEEEecC-CChhhHHHHHHHhhhcCCCCCCCchhHHHhHHHHHHHHHHHHHHhcCCcceecCC
Q 002364 266 DSASLPSETLESMQGVLVLRQHIP-ESDRKKNFLSRWKNLTGGSLGMNSYGLYAYDSVWLLAHAIESFFNQGGKISFSND 344 (930)
Q Consensus 266 ~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~f~~~~~~~~~~~~~~~~~~~~~YDav~~la~Al~~~~~~~~~~~~~~~ 344 (930)
.. ....+..+|++...++.+ ..|..++|.++|+++. ..|+.++..+|||++++++|++++..
T Consensus 233 ~~----~~~g~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~---~~p~~~~~~~yda~~~~~~al~~ag~---------- 295 (356)
T 3ipc_A 233 LA----SIAGDAVEGTLNTFGPDPTLRPENKELVEKFKAAG---FNPEAYTLYSYAAMQAIAGAAKAAGS---------- 295 (356)
T ss_dssp HH----HHHGGGGTTCEEEESCCGGGCGGGHHHHHHHHHTT---CCCCTTHHHHHHHHHHHHHHHHHHTC----------
T ss_pred HH----HHhhHHhCCEEEEecCCCCCChhHHHHHHHHHHcC---CCcchhHHHHHHHHHHHHHHHHHhCC----------
Confidence 11 223456788888777664 4688899999999872 45777999999999999999999632
Q ss_pred ccccccCCCcccCCCccccCchHHHHHHHHhCcccccccceEEccCCCcccceEEEEEeec---cceEEEEEEcCC
Q 002364 345 SRLKTMEGGNLHLGAMSIFDDGMLLLGNILQSNLVGLTGPLKFNSDRSLIHAAYDIINVIG---TGFRMIGYWSNY 417 (930)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~f~G~~G~v~fd~~g~~~~~~~~I~~~~~---~~~~~vg~w~~~ 417 (930)
.+++.|.++|++.+|+|++|+++||++|++....+.|+++++ ++|+.+..|.+.
T Consensus 296 -------------------~~~~~~~~~l~~~~~~g~~G~~~f~~~g~~~~~~~~i~~~~~~~~G~~~~~~~~~~~ 352 (356)
T 3ipc_A 296 -------------------VEPEKVAEALKKGSFPTALGEISFDEKGDPKLPGYVMYEWKKGPDGKFTYIQQGSHH 352 (356)
T ss_dssp -------------------CCHHHHHHHHTTCCBCCTTSSBCBCTTSCBCCCCCEEEEEEECTTSSEEEEEC----
T ss_pred -------------------CCHHHHHHHHHhCCCCCcceeeEECCCCCccCCCeEEEEEEECCCCcEEEEeccccc
Confidence 148999999999999999999999999998778999999995 899999988763
No 21
>4gnr_A ABC transporter substrate-binding protein-branche amino acid transport; amino acid-binding protein, surface-exposed protein; HET: MLY; 1.00A {Streptococcus pneumoniae}
Probab=100.00 E-value=4e-38 Score=348.65 Aligned_cols=339 Identities=16% Similarity=0.189 Sum_probs=282.3
Q ss_pred CCCceEEEEEEeeCCC---cchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCChHHHHHHHHHHHhc-CcEEEEc
Q 002364 27 ARPAVVNVGALFTLDS---TIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMET-DIVAIIG 102 (930)
Q Consensus 27 ~~~~~i~IG~i~~~s~---~~g~~~~~a~~~Av~~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~-~v~aiiG 102 (930)
..+++|+||+++|+|. .+|.....|+++|+++||++||++ |++|+++++|++|+|..+++.+.+|+++ +|.+|+|
T Consensus 3 ~~~~tIkIG~~~plsG~~a~~G~~~~~g~~lAv~~iN~~GGi~-Gr~ielv~~D~~~~p~~a~~~a~~li~~~~v~~i~g 81 (353)
T 4gnr_A 3 VEEKTIKIGFNFEESGSLAAYGTAEQKGAQLAVDEINAAGGID-GKQIEVVDKDNKSETAEAASVTTNLVTQSKVSAVVG 81 (353)
T ss_dssp ---CEEEEEEEECCSSTTHHHHHHHHHHHHHHHHHHHHTTCBT-TBEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEEC
T ss_pred CCCCeEEEEEEeCCcCchhHhHHHHHHHHHHHHHHHHhcCCCC-CeEEEEEEecCCCCHHHHHHHHHHHHhhCCceEEec
Confidence 4567999999999984 458899999999999999999995 9999999999999999999999999987 7999999
Q ss_pred CCChhHHHHHHHhhccCCCcEEecccCCCCCCCCCCCceEeecCCchHHHHHHHHHHHhcCc-cEEEEEEEc-Cccccch
Q 002364 103 PQCSTVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGW-NAVSVIFVD-NEYGRNG 180 (930)
Q Consensus 103 p~~s~~~~~v~~~~~~~~iP~is~~a~~~~l~~~~~p~~~r~~p~~~~~~~ai~~~l~~~~w-~~v~ii~~d-~~~g~~~ 180 (930)
|.+|..+.++++++++.++|+|++.++++.++. .++|+||+.|++..++.++++++...++ +++++++.+ ++||++.
T Consensus 82 ~~~s~~~~a~~~~~~~~~vp~i~~~~~~~~l~~-~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg~~~ 160 (353)
T 4gnr_A 82 PATSGATAAAVANATKAGVPLISPSATQDGLTK-GQDYLFIGTFQDSFQGKIISNYVSEKLNAKKVVLYTDNASDYAKGI 160 (353)
T ss_dssp CCSHHHHHHHHHHHHHTTCCEEESSCCCTTTTT-TCTTEEECSCCHHHHHHHHHHHHHHTSCCSEEEEEEETTCHHHHHH
T ss_pred cccCcccceehhhhhccCcceEeeccccccccc-CCccccccCCCcHHHHHHHHHHHHHhcCCcEEEEEEcCchHHHHHH
Confidence 999999999999999999999999999988875 4589999999999999999999876544 555555554 4588877
Q ss_pred HHHHHHHHhhcceEEEEEEecCCCCCCChhHHHHHHHHHHhCCceEEEEEcChhhHHHHHHHHHHcCcccCCeEEEEeCc
Q 002364 181 VSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATDW 260 (930)
Q Consensus 181 ~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~ 260 (930)
.+.+.+ +.|++++..+.++++ ..|+.+++.++++.++|+|++.+.+.++..++++++++|+..+ ++..++
T Consensus 161 ~~~~~~---~~g~~vv~~~~~~~~----~~d~~~~l~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~ 230 (353)
T 4gnr_A 161 AKSFRE---SYKGEIVADETFVAG----DTDFQAALTKMKGKDFDAIVVPGYYNEAGKIVNQARGMGIDKP---IVGGDG 230 (353)
T ss_dssp HHHHHH---HCCSEEEEEEEECTT----CCCCHHHHHHHHTSCCSEEECCSCHHHHHHHHHHHHHTTCCSC---EEECGG
T ss_pred HHHHHH---HcCCEEEEEEeeCCC----CCCHHHHHHHHHhcCCCEEEEecCcHHHHHHHHHHHHcCCCCc---EEEecc
Confidence 766654 357899988899877 7899999999999999999999999999999999999998654 566554
Q ss_pred chhcccCCCCChhhhhccccEEEEEEecC---CChhhHHHHHHHhhhcCCCCCCCchhHHHhHHHHHHHHHHHHHHhcCC
Q 002364 261 LAYMLDSASLPSETLESMQGVLVLRQHIP---ESDRKKNFLSRWKNLTGGSLGMNSYGLYAYDSVWLLAHAIESFFNQGG 337 (930)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~f~~~~~~~~~~~~~~~~~~~~~YDav~~la~Al~~~~~~~~ 337 (930)
+...... .....+...|++....+.+ .++..++|.++|++++ +..|+.++.++|||++++++|++++
T Consensus 231 ~~~~~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~--g~~p~~~a~~~Yda~~~la~Ai~~a----- 300 (353)
T 4gnr_A 231 FNGEEFV---QQATAEKASNIYFISGFSTTVEVSAKAKAFLDAYRAKY--NEEPSTFAALAYDSVHLVANAAKGA----- 300 (353)
T ss_dssp GCSHHHH---HHHCTTTCCSEEEEESCCSSSSCCHHHHHHHHHHHHHH--SSCCCHHHHHHHHHHHHHHHHHTTC-----
T ss_pred cccchhh---hhhhhhhhcCccccccccCCCCCCHHHHHHHHHHHHHh--CCCCChhHHHHHHHHHHHHHHHhcC-----
Confidence 4322111 0112346678777766543 4578899999999999 6778999999999999999999862
Q ss_pred cceecCCccccccCCCcccCCCccccCchHHHHHHHHhC-cccccccceEEccCCCcccceEEEEEeeccceEEEEEE
Q 002364 338 KISFSNDSRLKTMEGGNLHLGAMSIFDDGMLLLGNILQS-NLVGLTGPLKFNSDRSLIHAAYDIINVIGTGFRMIGYW 414 (930)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~-~f~G~~G~v~fd~~g~~~~~~~~I~~~~~~~~~~vg~w 414 (930)
.+++.+.++|+++ .|+|++|+++||+||++ ...+.|+++++++|+.+...
T Consensus 301 --------------------------~~~~~v~~aL~~~~~~~g~~G~i~f~~~g~~-~~~~~i~~v~~Gk~~~~~~v 351 (353)
T 4gnr_A 301 --------------------------KNSGEIKDNLAXTKDFEGVTGQTSFDADHNT-VKTAYMMTMNNGKVEAAEVV 351 (353)
T ss_dssp --------------------------SSHHHHHHHHHTCCCEEETTEEECCCTTSCC-CCCEEEEEEETTEEEEEEEE
T ss_pred --------------------------CCHHHHHHHHHhcCCCccCceeEEECCCcCC-cCCeEEEEEECCEEEEEEEe
Confidence 0378899999988 59999999999999985 56678999999999887654
No 22
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=100.00 E-value=4.3e-38 Score=350.31 Aligned_cols=342 Identities=17% Similarity=0.181 Sum_probs=297.6
Q ss_pred CCceEEEEEEeeCCC---cchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCChHHHHHHHHHHHhc-CcEEEEcC
Q 002364 28 RPAVVNVGALFTLDS---TIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMET-DIVAIIGP 103 (930)
Q Consensus 28 ~~~~i~IG~i~~~s~---~~g~~~~~a~~~Av~~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~-~v~aiiGp 103 (930)
.+.+++||+++|+|. ..|.....|+++|++++|+ + .|++++++++|+++++..+.+.+++|+++ +|.+||||
T Consensus 13 ~~~~~~iG~~~plsG~~a~~g~~~~~g~~~a~~~in~---i-~G~~i~l~~~D~~~~~~~~~~~~~~l~~~~~v~~iiG~ 88 (366)
T 3td9_A 13 MRKVVKIAVILPMTGGISAFGRMVWEGIQIAHEEKPT---V-LGEEVELVLLDTRSEKTEAANAAARAIDKEKVLAIIGE 88 (366)
T ss_dssp ---CEEEEEEECCSSTTHHHHHHHHHHHHHHHHHCCE---E-TTEEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEEEC
T ss_pred hcceEEEEEEECCcCcchhcCHHHHHHHHHHHHHhhh---c-CCeEEEEEEecCCCCHHHHHHHHHHHhccCCeEEEEcc
Confidence 456899999999994 4578899999999999999 5 49999999999999999999999999998 59999999
Q ss_pred CChhHHHHHHHhhccCCCcEEecccCCCCCCCCCCCceEeecCCchHHHHHHHHHH-HhcCccEEEEEEE-cCccccchH
Q 002364 104 QCSTVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMV-SYYGWNAVSVIFV-DNEYGRNGV 181 (930)
Q Consensus 104 ~~s~~~~~v~~~~~~~~iP~is~~a~~~~l~~~~~p~~~r~~p~~~~~~~ai~~~l-~~~~w~~v~ii~~-d~~~g~~~~ 181 (930)
.++..+.++++++++.++|+|++.++++.+++ .+||+||+.|++..++.++++++ +++||+++++||. +++||....
T Consensus 89 ~~s~~~~~~~~~~~~~~iP~i~~~~~~~~~~~-~~~~~f~~~~~~~~~~~~~~~~l~~~~g~~~iaii~~~~~~~~~~~~ 167 (366)
T 3td9_A 89 VASAHSLAIAPIAEENKVPMVTPASTNPLVTQ-GRKFVSRVCFIDPFQGAAMAVFAYKNLGAKRVVVFTDVEQDYSVGLS 167 (366)
T ss_dssp SSHHHHHHHHHHHHHTTCCEEESSCCCGGGTT-TCSSEEESSCCHHHHHHHHHHHHHHTSCCCEEEEEEETTCHHHHHHH
T ss_pred CCchhHHHHHHHHHhCCCeEEecCCCCccccC-CCCCEEEEeCCcHHHHHHHHHHHHHhcCCcEEEEEEeCCCcHHHHHH
Confidence 99999999999999999999999888887764 57999999999999999999998 6689999999986 788999999
Q ss_pred HHHHHHHhhcceEEEEEEecCCCCCCChhHHHHHHHHHHhCCceEEEEEcChhhHHHHHHHHHHcCcccCCeEEEEeCcc
Q 002364 182 SALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATDWL 261 (930)
Q Consensus 182 ~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~~ 261 (930)
+.+++.+++.|+++.... ++.+ ..++...++++++.++|+|++.+++.++..+++++++.|+.. .|++++++
T Consensus 168 ~~~~~~~~~~G~~v~~~~-~~~~----~~d~~~~~~~l~~~~~d~v~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~~ 239 (366)
T 3td9_A 168 NFFINKFTELGGQVKRVF-FRSG----DQDFSAQLSVAMSFNPDAIYITGYYPEIALISRQARQLGFTG---YILAGDGA 239 (366)
T ss_dssp HHHHHHHHHTTCEEEEEE-ECTT----CCCCHHHHHHHHHTCCSEEEECSCHHHHHHHHHHHHHTTCCS---EEEECGGG
T ss_pred HHHHHHHHHCCCEEEEEE-eCCC----CccHHHHHHHHHhcCCCEEEEccchhHHHHHHHHHHHcCCCc---eEEeeCCc
Confidence 999999999999998887 7765 678889999999999999999999999999999999999854 37776654
Q ss_pred hhcccCCCCChhhhhccccEEEEEEecCC---ChhhHHHHHHHhhhcCCCCCCCchhHHHhHHHHHHHHHHHHHHhcCCc
Q 002364 262 AYMLDSASLPSETLESMQGVLVLRQHIPE---SDRKKNFLSRWKNLTGGSLGMNSYGLYAYDSVWLLAHAIESFFNQGGK 338 (930)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~f~~~~~~~~~~~~~~~~~~~~~YDav~~la~Al~~~~~~~~~ 338 (930)
...... ....+..+|++...++.+. .+..++|.++|++++ +..|+.++..+|||++++++|++++..
T Consensus 240 ~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~--g~~p~~~~~~~yda~~~~~~al~~ag~---- 309 (366)
T 3td9_A 240 DAPELI----EIGGEAVEGLLFTTHYHPKAASNPVAKKFVEVYKEKY--GKEPAALNALGYDAYMVLLDAIERAGS---- 309 (366)
T ss_dssp CSTHHH----HHHGGGGTTCEEEESCCGGGCCSHHHHHHHHHHHHHH--SSCCCHHHHHHHHHHHHHHHHHHHHTS----
T ss_pred CCHHHH----HHHhHHhCCeEEEEeeCCCCCCCHHHHHHHHHHHHHH--CCCCchhHHHHHHHHHHHHHHHHHhCC----
Confidence 332111 2344578899888877664 678999999999999 566889999999999999999999632
Q ss_pred ceecCCccccccCCCcccCCCccccCchHHHHHHHHhCc-ccccccceEEccCCCcccceEEEEEeeccceEEEEEEcCC
Q 002364 339 ISFSNDSRLKTMEGGNLHLGAMSIFDDGMLLLGNILQSN-LVGLTGPLKFNSDRSLIHAAYDIINVIGTGFRMIGYWSNY 417 (930)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~-f~G~~G~v~fd~~g~~~~~~~~I~~~~~~~~~~vg~w~~~ 417 (930)
.+++.|.++|++++ |+|++|+++||++|++. ..+.|+++++++++.|+.|++.
T Consensus 310 -------------------------~~~~~~~~~l~~~~~~~g~~G~i~f~~~g~~~-~~~~i~~~~~g~~~~v~~~~~~ 363 (366)
T 3td9_A 310 -------------------------FDREKIAEEIRKTRNFNGASGIINIDENGDAI-KSVVVNIVKNGSVDFEAVINPD 363 (366)
T ss_dssp -------------------------CCHHHHHHHHTTCCSEEETTEEECBCTTSCBC-CCEEEEEEETTEEEEEEEECGG
T ss_pred -------------------------CCHHHHHHHHHhCCCCcccceeeEECCCCCcc-CceEEEEEECCEEEEEEecChh
Confidence 14899999999998 99999999999999864 5699999999999999999875
Q ss_pred C
Q 002364 418 S 418 (930)
Q Consensus 418 ~ 418 (930)
.
T Consensus 364 ~ 364 (366)
T 3td9_A 364 D 364 (366)
T ss_dssp G
T ss_pred h
Confidence 3
No 23
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=100.00 E-value=1.8e-37 Score=344.30 Aligned_cols=343 Identities=17% Similarity=0.184 Sum_probs=298.4
Q ss_pred ceEEEEEEeeCCC---cchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCChHHHHHHHHHHH-hcCcEEEEcCCC
Q 002364 30 AVVNVGALFTLDS---TIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFM-ETDIVAIIGPQC 105 (930)
Q Consensus 30 ~~i~IG~i~~~s~---~~g~~~~~a~~~Av~~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li-~~~v~aiiGp~~ 105 (930)
++|+||+++|++. ..|.....|+++|++++|++||++ |+++++++.|+++++..+.+.+.+|+ +++|.+||||.+
T Consensus 3 ~~i~IG~i~p~sg~~~~~~~~~~~g~~~a~~~~n~~ggi~-G~~~~l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig~~~ 81 (358)
T 3hut_A 3 LALLLGYELPLTGANAAYGRVFQEAARLQLDRFNAAGGVG-GRPVDILYADSRDDADQARTIARAFVDDPRVVGVLGDFS 81 (358)
T ss_dssp CCEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHTTTBT-TBCEEEEEEECTTCHHHHHHHHHHHHHCTTEEEEEECSS
T ss_pred ccEEEEEEeccCCchhhcCHHHHHHHHHHHHHHHhhCCCC-CeEEEEEEecCCCCHHHHHHHHHHHhccCCcEEEEcCCC
Confidence 5899999999974 357889999999999999999996 99999999999999999999999999 669999999999
Q ss_pred hhHHHHHHHhhccCCCcEEecccCCCCCCCCCCCceEeecCCchHHHHHHHHHHHhcCccEEEEEEEcCccccchHHHHH
Q 002364 106 STVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALN 185 (930)
Q Consensus 106 s~~~~~v~~~~~~~~iP~is~~a~~~~l~~~~~p~~~r~~p~~~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~ 185 (930)
+..+.++++++.+.++|+|++.++++.+++.. |++||+.|++..++.++++++...||++|++|+.++.+|+...+.++
T Consensus 82 s~~~~~~~~~~~~~~iP~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~~~~~~~~~~~~ 160 (358)
T 3hut_A 82 STVSMAAGSIYGKEGMPQLSPTAAHPDYIKIS-PWQFRAITTPAFEGPNNAAWMIGDGFTSVAVIGVTTDWGLSSAQAFR 160 (358)
T ss_dssp HHHHHHHHHHHHHHTCCEEESSCCCGGGTTSC-TTEEESSCCGGGHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHCCCcEEecCCCCcccccCC-CeEEEecCChHHHHHHHHHHHHHcCCCEEEEEecCcHHHHHHHHHHH
Confidence 99999999999999999999988888887654 99999999999999999999888899999999999999999999999
Q ss_pred HHHhhcceEEEEEEecCCCCCCChhHHHHHHHHHHhCCceEEEEEcChhhHHHHHHHHHHcCcccCCeEEEEeCcchhcc
Q 002364 186 DKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATDWLAYML 265 (930)
Q Consensus 186 ~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~~~~~~ 265 (930)
+++++.|+++.....++.+ ..++...++++++.++++|++.++...+..+++++++.|+..+ |++.+++....
T Consensus 161 ~~l~~~g~~v~~~~~~~~~----~~~~~~~~~~l~~~~~d~i~~~~~~~~a~~~~~~~~~~g~~~p---~~~~~~~~~~~ 233 (358)
T 3hut_A 161 KAFELRGGAVVVNEEVPPG----NRRFDDVIDEIEDEAPQAIYLAMAYEDAAPFLRALRARGSALP---VYGSSALYSPK 233 (358)
T ss_dssp HHHHHTTCEEEEEEEECTT----CCCCHHHHHHHHHHCCSEEEEESCHHHHHHHHHHHHHTTCCCC---EEECGGGCSHH
T ss_pred HHHHHcCCEEEEEEecCCC----CccHHHHHHHHHhcCCCEEEEccCchHHHHHHHHHHHcCCCCc---EEecCcccCHH
Confidence 9999999999887777765 6778889999998899999999999999999999999998544 77776543321
Q ss_pred cCCCCChhhhhccccEEEEEEecC--CChhhHHHHHHHhhhcCCCCCCCchhHHHhHHHHHHHHHHHHHHhcCCcceecC
Q 002364 266 DSASLPSETLESMQGVLVLRQHIP--ESDRKKNFLSRWKNLTGGSLGMNSYGLYAYDSVWLLAHAIESFFNQGGKISFSN 343 (930)
Q Consensus 266 ~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~f~~~~~~~~~~~~~~~~~~~~~YDav~~la~Al~~~~~~~~~~~~~~ 343 (930)
.. ....+..+|++...++.+ .+|..++|.++|++++ +..|+.++..+|||++++++|++++...
T Consensus 234 ~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~--~~~p~~~~~~~yda~~~~~~al~~ag~~-------- 299 (358)
T 3hut_A 234 FI----DLGGPAVEGVRLATAFVLGASDPVVVEFVSAYETLY--GAIPTLFAAHGYDAVGIMLAAVGRAGPE-------- 299 (358)
T ss_dssp HH----HHHGGGGTTCEEEESCCTTCCSHHHHHHHHHHHHHH--SSCCCHHHHHHHHHHHHHHHHHHHHCTT--------
T ss_pred HH----HHhHHhhCCeEEEeccCCCCCCHHHHHHHHHHHHHH--CCCCCHHHHHHHHHHHHHHHHHHHhCCC--------
Confidence 11 233456889998887765 4688999999999998 5578899999999999999999996321
Q ss_pred CccccccCCCcccCCCccccCchHH-HHHHHHhC-cccccccceEEccCCCcccceEEEEEeeccceEEEEEEcC
Q 002364 344 DSRLKTMEGGNLHLGAMSIFDDGML-LLGNILQS-NLVGLTGPLKFNSDRSLIHAAYDIINVIGTGFRMIGYWSN 416 (930)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~g~~-l~~~l~~~-~f~G~~G~v~fd~~g~~~~~~~~I~~~~~~~~~~vg~w~~ 416 (930)
+++. |.++|+++ +|+|++|+++||++|++....+.|+++++++|+.+..+.+
T Consensus 300 ---------------------~~~~~~~~~l~~~~~~~g~~G~~~f~~~g~~~~~~~~i~~~~~G~~~~~~~~~~ 353 (358)
T 3hut_A 300 ---------------------VTRESLRDALAATDRYAGVTGITRFDPETRETTKILTRLVVREGDFRVIDREGH 353 (358)
T ss_dssp ---------------------CCHHHHHHHHHTCCSEEETTEEEEECTTTCCEEECCEEEEEETTEEEEC-----
T ss_pred ---------------------ChHHHHHHHHHhcCCCcCCceeeEECCCCCcCCCceEEEEEECCEEEEeccccc
Confidence 3677 99999999 8999999999999999767889999999999998876654
No 24
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=100.00 E-value=4.7e-38 Score=353.43 Aligned_cols=353 Identities=12% Similarity=0.027 Sum_probs=300.8
Q ss_pred CCceEEEEEEeeCCC---cchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCChHHHHHHHHHHHhc-CcEEEEcC
Q 002364 28 RPAVVNVGALFTLDS---TIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMET-DIVAIIGP 103 (930)
Q Consensus 28 ~~~~i~IG~i~~~s~---~~g~~~~~a~~~Av~~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~-~v~aiiGp 103 (930)
..++|+||+++|++. ..|.....|+++|++++|++||++ |++++++++|+++++..+.+.+++|+++ +|.+|||
T Consensus 4 a~~~i~IG~~~p~sG~~a~~g~~~~~g~~~a~~~iN~~ggi~-G~~i~l~~~D~~~~~~~~~~~~~~li~~~~V~~iig- 81 (392)
T 3lkb_A 4 GQQQVTLFWSGAITGPTSDAGAPYGAAVEDYCKWANERKLVP-GVVFNCVVRDDQYNNANTQRFFEEAVDRFKIPVFLS- 81 (392)
T ss_dssp CCEEEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHHTSST-TEEEEEEEEECTTCHHHHHHHHHHHHHTTCCSCEEE-
T ss_pred cCCceEEEEEecccCchhhcChhHHHHHHHHHHHHHhcCCcC-CeEeEEEEecCCCCHHHHHHHHHHHHhhcCcEEEEe-
Confidence 357999999999984 357889999999999999999996 9999999999999999999999999997 9999999
Q ss_pred CChhHHHHHHHhhccCCCcEEecccCCCCCCC-CCCCceEeecCCchHHHHHHHHHHHh-cCccEEEEEEEcCccccchH
Q 002364 104 QCSTVAHIVSYVSNELQVPLLSFGVTDPTLSS-LQYPFFVRTTQSDSYQMTAVAEMVSY-YGWNAVSVIFVDNEYGRNGV 181 (930)
Q Consensus 104 ~~s~~~~~v~~~~~~~~iP~is~~a~~~~l~~-~~~p~~~r~~p~~~~~~~ai~~~l~~-~~w~~v~ii~~d~~~g~~~~ 181 (930)
.+|..+.++++++.+.++|+|+++++.+ +.+ ..+|++||+.|++..++.++++++.. +||++|++|+.+++||+...
T Consensus 82 ~~s~~~~~~~~~~~~~~iP~i~~~~~~~-~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~~g~~~iaii~~~~~~g~~~~ 160 (392)
T 3lkb_A 82 YATGANLQLKPLIQELRIPTIPASMHIE-LIDPPNNDYIFLPTTSYSEQVVALLEYIAREKKGAKVALVVHPSPFGRAPV 160 (392)
T ss_dssp CCHHHHHHHHHHHHHHTCCEEESCCCGG-GGSSSSCTTBCEEECCHHHHHHHHHHHHHHHCTTCEEEEEECSSHHHHTTH
T ss_pred CCcHHHHHHHHHHHhCCceEEecccChh-hccCCCCCceEecCCChHHHHHHHHHHHHHhCCCCEEEEEEeCCchhhhHH
Confidence 6888999999999999999999766544 444 56899999999999999999999876 69999999999999999999
Q ss_pred HHHHHHHhhcceEEEEEEecCCCCCCChhHHHHHHHHHHhCCceEEEEEcChhhHHHHHHHHHHcCcccCCeEEEEeCcc
Q 002364 182 SALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATDWL 261 (930)
Q Consensus 182 ~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~~ 261 (930)
+.+++++++.|++++....++.+ ..|+...+.++++.++|+|++++....+..++++++++|+.. .|+.++++
T Consensus 161 ~~~~~~l~~~G~~v~~~~~~~~~----~~d~~~~~~~l~~~~~dav~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~~ 233 (392)
T 3lkb_A 161 EDARKAARELGLQIVDVQEVGSG----NLDNTALLKRFEQAGVEYVVHQNVAGPVANILKDAKRLGLKM---RHLGAHYT 233 (392)
T ss_dssp HHHHHHHHHHTCEEEEEEECCTT----CCCCHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCC---EEEECGGG
T ss_pred HHHHHHHHHcCCeEEEEEeeCCC----CcCHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHHHcCCCc---eEEEecCc
Confidence 99999999999999988888765 678899999999999999999999999999999999999854 36666554
Q ss_pred hhcccCCCCChhhhhccccEEEEEEecC--CChhhHHHHHHHhhhcCCCCCCCch----hHHHhHHHHHHHHHHHHHHhc
Q 002364 262 AYMLDSASLPSETLESMQGVLVLRQHIP--ESDRKKNFLSRWKNLTGGSLGMNSY----GLYAYDSVWLLAHAIESFFNQ 335 (930)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~f~~~~~~~~~~~~~~~~~----~~~~YDav~~la~Al~~~~~~ 335 (930)
...... ....+..+|++...++.+ .++..++|.++|+++| +..++.+ +..+|||++++++|++++...
T Consensus 234 ~~~~~~----~~~g~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~--~~~p~~~~~~~~~~~yda~~~~~~al~~ag~~ 307 (392)
T 3lkb_A 234 GGPDLI----ALAGDAAEGFLWATSFYMAHEDTPGIRLQKEIGRKY--GRPENFIESVNYTNGMLAAAIAVEAIRRAQER 307 (392)
T ss_dssp CSHHHH----HHHGGGGTTCEEEESBCCTTSCCHHHHHHHHHHHHT--TCCHHHHTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHH----HhhhhhhcCeEEEEeecCCCCCchhHHHHHHHHHHh--CCCcccccchhHHHHHHHHHHHHHHHHHhhcc
Confidence 322111 223456889988887654 2456789999999998 4455444 789999999999999998652
Q ss_pred CCcceecCCccccccCCCcccCCCccccCchHHHHHHHHhCc----cc-------ccccceEEccCCCcccceEEEEEee
Q 002364 336 GGKISFSNDSRLKTMEGGNLHLGAMSIFDDGMLLLGNILQSN----LV-------GLTGPLKFNSDRSLIHAAYDIINVI 404 (930)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~----f~-------G~~G~v~fd~~g~~~~~~~~I~~~~ 404 (930)
++. .+++.|.++|++++ |+ |++|+++||++|++....+.|++++
T Consensus 308 ~~~-------------------------~~~~~v~~aL~~~~~~~~~~~~~~~~~G~~G~i~f~~~~~~~~~~~~i~~~~ 362 (392)
T 3lkb_A 308 FKR-------------------------ITNETVYQAIVGMNGPNAFKPGFAVSTKQGVEIDFTKSEHTGAEGLRILEAK 362 (392)
T ss_dssp HSS-------------------------CCHHHHHHHHHTCCGGGCBCCSSBCCCSSSCSBCCCSSCCEEECCBEEEEEE
T ss_pred CCC-------------------------CCHHHHHHHHHhcCCCcCcccccccccccceeeEeCCCCcCCcccEEEEEEe
Confidence 211 14899999999997 98 9999999999988777889999999
Q ss_pred ccceEEEEEEcCCCCCC
Q 002364 405 GTGFRMIGYWSNYSGLS 421 (930)
Q Consensus 405 ~~~~~~vg~w~~~~gl~ 421 (930)
+++++.|+.|....++.
T Consensus 363 ~g~~~~v~~w~~~~~~~ 379 (392)
T 3lkb_A 363 GGRFVPVTEPFTSALFR 379 (392)
T ss_dssp TTEEEECSCCBCCHHHH
T ss_pred CCEEEEeccccchhHHH
Confidence 99999999998766543
No 25
>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A 1z17_A 1z18_A 2liv_A
Probab=100.00 E-value=2.1e-37 Score=341.99 Aligned_cols=339 Identities=17% Similarity=0.227 Sum_probs=292.0
Q ss_pred ceEEEEEEeeCCCc---chhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCh
Q 002364 30 AVVNVGALFTLDST---IGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCS 106 (930)
Q Consensus 30 ~~i~IG~i~~~s~~---~g~~~~~a~~~Av~~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~s 106 (930)
++|+||+++|++.. .|.....|+++|+++||++||+ +|+++++++.|+++++..+.+.+.+|++++|.+||||.++
T Consensus 1 ~~i~IG~~~p~~g~~~~~~~~~~~g~~~a~~~iN~~ggi-~G~~l~l~~~d~~~~~~~~~~~~~~l~~~~v~~iig~~~s 79 (346)
T 1usg_A 1 DDIKVAVVGAMSGPIAQWGDMEFNGARQAIKDINAKGGI-KGDKLVGVEYDDACDPKQAVAVANKIVNDGIKYVIGHLCS 79 (346)
T ss_dssp CCEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHTTTB-TTBCEEEEEEECTTCHHHHHHHHHHHHHTTCCEEECCSSH
T ss_pred CcEEEEEEeCCCCcchhcCHHHHHHHHHHHHHHHHhCCC-CCeEEEEEEeCCCCCHHHHHHHHHHHHhCCCCEEEcCCCc
Confidence 36999999999754 4778899999999999999999 6999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhhccCCCcEEecccCCCCCCCCCCCceEeecCCchHHHHHHHHHH-HhcCccEEEEEEEcCccccchHHHHH
Q 002364 107 TVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMV-SYYGWNAVSVIFVDNEYGRNGVSALN 185 (930)
Q Consensus 107 ~~~~~v~~~~~~~~iP~is~~a~~~~l~~~~~p~~~r~~p~~~~~~~ai~~~l-~~~~w~~v~ii~~d~~~g~~~~~~l~ 185 (930)
..+.++++++.+.++|+|++.++++.+++..+|++||+.|++..++..+++++ +++||++|++|+.++.||+...+.++
T Consensus 80 ~~~~~~~~~~~~~~ip~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~i~~i~~~~~~~~~~~~~~~ 159 (346)
T 1usg_A 80 SSTQPASDIYEDEGILMISPGATNPELTQRGYQHIMRTAGLDSSQGPTAAKYILETVKPQRIAIIHDKQQYGEGLARSVQ 159 (346)
T ss_dssp HHHHHHHHHHHHHTCEEEECCCCCGGGGSSCCSSEEECSCCGGGHHHHHHHHHHHTTCCSSEEEEECSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCeEEeeCCCChHHhcCCCCcEEeccCChHHHHHHHHHHHHHhcCCCeEEEEECCCchHHHHHHHHH
Confidence 99999999999999999999888877776558999999999999999999998 55799999999999999999999999
Q ss_pred HHHhhcceEEEEEEecCCCCCCChhHHHHHHHHHHhCCceEEEEEcChhhHHHHHHHHHHcCcccCCeEEEEeCcchhcc
Q 002364 186 DKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATDWLAYML 265 (930)
Q Consensus 186 ~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~~~~~~ 265 (930)
+.+++.|+++.....++.+ ..++.+.++++++.++|+|++.+....+..++++++++|+..+ |++++.+....
T Consensus 160 ~~l~~~g~~v~~~~~~~~~----~~d~~~~~~~l~~~~~d~i~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~~~~~~ 232 (346)
T 1usg_A 160 DGLKAANANVVFFDGITAG----EKDFSALIARLKKENIDFVYYGGYYPEMGQMLRQARSVGLKTQ---FMGPEGVGNAS 232 (346)
T ss_dssp HHHHHTTCCEEEEEECCTT----CCCCHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCE---EEECGGGCCTT
T ss_pred HHHHHcCCEEEEEeccCCC----CcCHHHHHHHHHhcCCCEEEEcCcchHHHHHHHHHHHcCCCCe---EEecCCCCcHH
Confidence 9999999999877777655 5577788999998899999999988889999999999998654 78776553221
Q ss_pred cCCCCChhhhhccccEEEEEEec-CCChhhHHHHHHHhhhcCCCCCCCchhHHHhHHHHHHHHHHHHHHhcCCcceecCC
Q 002364 266 DSASLPSETLESMQGVLVLRQHI-PESDRKKNFLSRWKNLTGGSLGMNSYGLYAYDSVWLLAHAIESFFNQGGKISFSND 344 (930)
Q Consensus 266 ~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~YDav~~la~Al~~~~~~~~~~~~~~~ 344 (930)
.. ....+..+|++.+.++. ++++..++|.++|++++ +..++.++..+|||++++++|++++..
T Consensus 233 ~~----~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~--~~~~~~~~~~~yda~~~~~~al~~~g~---------- 296 (346)
T 1usg_A 233 LS----NIAGDAAEGMLVTMPKRYDQDPANQGIVDALKADK--KDPSGPYVWITYAAVQSLATALERTGS---------- 296 (346)
T ss_dssp HH----HHHGGGGTTCEEEECCCGGGSGGGHHHHHHHHHTT--CCCCCHHHHHHHHHHHHHHHHHHHHCC----------
T ss_pred HH----HHhhHhhCCeEEecCCCCCCCHHHHHHHHHHHHHh--CCCCchhHHHHHHHHHHHHHHHHHhCC----------
Confidence 00 22335678888877653 35678899999999988 456788999999999999999999621
Q ss_pred ccccccCCCcccCCCccccCchHHHHHHHHhCcccccccceEEccCCCcccceEEEEEee-ccceEEE
Q 002364 345 SRLKTMEGGNLHLGAMSIFDDGMLLLGNILQSNLVGLTGPLKFNSDRSLIHAAYDIINVI-GTGFRMI 411 (930)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~f~G~~G~v~fd~~g~~~~~~~~I~~~~-~~~~~~v 411 (930)
.+++.|.++|++.+|+|++|+++||++|++....|.|++++ +++++.|
T Consensus 297 -------------------~~~~~l~~~l~~~~~~g~~G~i~f~~~g~~~~~~~~i~~~~~~G~~~~~ 345 (346)
T 1usg_A 297 -------------------DEPLALVKDLKANGANTVIGPLNWDEKGDLKGFDFGVFQWHADGSSTKA 345 (346)
T ss_dssp -------------------CCHHHHHHHHHHHCEEETTEEECBCTTSSBSSCCCEEEEECTTSCEEEC
T ss_pred -------------------CCHHHHHHHHHhCCCccceeeeEECCCCCccCCceEEEEEecCCEEEec
Confidence 13889999999999999999999999999777889999999 8888765
No 26
>3i09_A Periplasmic branched-chain amino acid-binding Pro; type I periplasmic binding protein, structural genomics, JOI for structural genomics; HET: MSE CIT; 1.80A {Burkholderia mallei}
Probab=100.00 E-value=4.7e-37 Score=343.08 Aligned_cols=333 Identities=15% Similarity=0.152 Sum_probs=291.4
Q ss_pred CceEEEEEEeeCCCc---c-hhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCChHHHHHHHHHHHh-cCcEEEEcC
Q 002364 29 PAVVNVGALFTLDST---I-GRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFME-TDIVAIIGP 103 (930)
Q Consensus 29 ~~~i~IG~i~~~s~~---~-g~~~~~a~~~Av~~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~-~~v~aiiGp 103 (930)
.++|+||+++|++.. . |.....|+++|++++ +||+ .|++++++++|+++++..+.+.+++|++ ++|.+||||
T Consensus 2 ~~~i~IG~~~p~sg~~a~~~g~~~~~g~~~A~~~~--~ggi-~G~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~~iiG~ 78 (375)
T 3i09_A 2 ADSVKIGFITDMSGLYADIDGQGGLEAIKMAVADF--GGKV-NGKPIEVVYADHQNKADIAASKAREWMDRGGLDLLVGG 78 (375)
T ss_dssp CSSEEEEEEECSSSTTTTTSHHHHHHHHHHHHHHH--TSEE-TTEEEEEEEEECTTCHHHHHHHHHHHHHHSCEEEEEEC
T ss_pred CCCeEEEEEeCCCcccccccCHHHHHHHHHHHHHh--CCCC-CCeEEEEEEecCCCCHHHHHHHHHHHHhhCCCEEEECC
Confidence 358999999999843 4 788999999999999 4677 4999999999999999999999999998 699999999
Q ss_pred CChhHHHHHHHhhccCCCcEEecccCCCCCCC-CCCCceEeecCCchHHHHHHHHHHHhcCccEEEEEEEcCccccchHH
Q 002364 104 QCSTVAHIVSYVSNELQVPLLSFGVTDPTLSS-LQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVS 182 (930)
Q Consensus 104 ~~s~~~~~v~~~~~~~~iP~is~~a~~~~l~~-~~~p~~~r~~p~~~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~ 182 (930)
.+|..+.++++++.+.++|+|+++++++.+++ ..+||+||+.|++..++.++++++.+++|++|++|+.|++||+...+
T Consensus 79 ~~s~~~~a~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~g~~~vaii~~~~~~g~~~~~ 158 (375)
T 3i09_A 79 TNSATALSMNQVAAEKKKVYINIGAGADTLTNEQCTPYTVHYAYDTMALAKGTGSAVVKQGGKTWFFLTADYAFGKALEK 158 (375)
T ss_dssp SCHHHHHHHHHHHHHHTCEEEECSCCCGGGGTTTCCTTEEECSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCceEEEeCCCchhhhcccCCCcEEEeeCChHHHHHHHHHHHHHcCCceEEEEecccHHHHHHHH
Confidence 99999999999999999999999988888887 56899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcceEEEEEEecCCCCCCChhHHHHHHHHHHhCCceEEEEEcChhhHHHHHHHHHHcCcccCCeEEEEeCcch
Q 002364 183 ALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATDWLA 262 (930)
Q Consensus 183 ~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~~~ 262 (930)
.+++.+++.|++++....++.+ ..|+...+.++++.++|+|++.+...++..++++++++|+..+. .+++.+++.
T Consensus 159 ~~~~~~~~~G~~v~~~~~~~~~----~~d~~~~l~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~g~~~~~-~i~g~~~~~ 233 (375)
T 3i09_A 159 NTADVVKANGGKVLGEVRHPLS----ASDFSSFLLQAQSSKAQILGLANAGGDTVNAIKAAKEFGITKTM-KLAALLMFI 233 (375)
T ss_dssp HHHHHHHHTTCEEEEEEEECTT----CSCCHHHHHHHHHTCCSEEEEECCHHHHHHHHHHHHHTTGGGTC-EEEESSCCH
T ss_pred HHHHHHHHcCCEEeeeeeCCCC----CccHHHHHHHHHhCCCCEEEEecCchhHHHHHHHHHHcCCCcCc-eEEecccch
Confidence 9999999999999988888866 67899999999999999999999999999999999999997766 455544443
Q ss_pred hcccCCCCChhhhhccccEEEEEEecCC-ChhhHHHHHHHhhhcCCCCCCCchhHHHhHHHHHHHHHHHHHHhcCCccee
Q 002364 263 YMLDSASLPSETLESMQGVLVLRQHIPE-SDRKKNFLSRWKNLTGGSLGMNSYGLYAYDSVWLLAHAIESFFNQGGKISF 341 (930)
Q Consensus 263 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~YDav~~la~Al~~~~~~~~~~~~ 341 (930)
..+. ....+..+|++...++.++ ++..++|.++|+++| +..|+.++..+|||++++++|++++...
T Consensus 234 ~~~~-----~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~--g~~p~~~a~~~Yda~~~~~~Al~~ag~~------ 300 (375)
T 3i09_A 234 NDVH-----ALGLETTQGLVLTDSWYWNRDQASRQWAQRYFAKM--KKMPSSLQAADYSSVTTYLKAVQAAGST------ 300 (375)
T ss_dssp HHHH-----HHCHHHHTTCEEEESCCTTSSHHHHHHHHHHHHHH--SSCCCHHHHHHHHHHHHHHHHHHHHTSC------
T ss_pred hhHh-----hhChhhhCCeeeeeeecCCCCHHHHHHHHHHHHHH--CCCCcHHHHHHHHHHHHHHHHHHHhCCC------
Confidence 3211 1123567888887776654 688999999999999 5678899999999999999999996321
Q ss_pred cCCccccccCCCcccCCCccccCchHHHHHHHHhCcccccccceEEccCCCcccceEEEEEeecc
Q 002364 342 SNDSRLKTMEGGNLHLGAMSIFDDGMLLLGNILQSNLVGLTGPLKFNSDRSLIHAAYDIINVIGT 406 (930)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~f~G~~G~v~fd~~g~~~~~~~~I~~~~~~ 406 (930)
+++.|.++|++++|+|++|.+.||+||++ ...+.|++++++
T Consensus 301 -----------------------~~~~l~~aL~~~~~~~~~G~~~f~~~g~~-~~~~~i~~v~~~ 341 (375)
T 3i09_A 301 -----------------------DSDKVMAQLKKMKIDDFYAKGYIRTDGSM-IHDMYLMEVKKP 341 (375)
T ss_dssp -----------------------CHHHHHHHHTTSCEESSSCEEEECTTSBE-ECCEEEEEECCG
T ss_pred -----------------------CHHHHHHHHhCCCccCCCCceEECCCCCe-eeeeEEEEEecc
Confidence 48999999999999999999999999985 457788888754
No 27
>3n0w_A ABC branched chain amino acid family transporter, periplasmic ligand binding protein...; receptor family ligand binding region; HET: MSE; 1.88A {Burkholderia xenovorans}
Probab=100.00 E-value=6.5e-37 Score=342.39 Aligned_cols=335 Identities=13% Similarity=0.106 Sum_probs=289.3
Q ss_pred CceEEEEEEeeCCC---cc-hhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCChHHHHHHHHHHHh-cCcEEEEcC
Q 002364 29 PAVVNVGALFTLDS---TI-GRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFME-TDIVAIIGP 103 (930)
Q Consensus 29 ~~~i~IG~i~~~s~---~~-g~~~~~a~~~Av~~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~-~~v~aiiGp 103 (930)
.++|+||+++|++. .. |.....|+++|++++ +||+ .|++++++++|+++++..+...+++|++ ++|.+||||
T Consensus 4 ~~~i~IG~~~p~sg~~a~~~g~~~~~g~~~a~~~i--~ggi-~G~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~~iiG~ 80 (379)
T 3n0w_A 4 TGQVTLGVLTDMSSVYADSAGKGSVAAVQLAIEDV--GGKA-LGQPVKLVSADYQMKTDVALSIAREWFDRDGVDAIFDV 80 (379)
T ss_dssp --CCEEEEEECSSSTTTTTSHHHHHHHHHHHHHHT--TTEE-TTEECEEEEEECTTCHHHHHHHHHHHHHHSCCCEEEEC
T ss_pred CCcEEEEEEeCCccccccccCHHHHHHHHHHHHHh--cCCC-CCeEEEEEEeCCCCCHHHHHHHHHHHHHhCCceEEEcC
Confidence 46899999999984 34 788999999999999 4677 5999999999999999999999999998 699999999
Q ss_pred CChhHHHHHHHhhccCCCcEEecccCCCCCCC-CCCCceEeecCCchHHHHHHHHHHHhcCccEEEEEEEcCccccchHH
Q 002364 104 QCSTVAHIVSYVSNELQVPLLSFGVTDPTLSS-LQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVS 182 (930)
Q Consensus 104 ~~s~~~~~v~~~~~~~~iP~is~~a~~~~l~~-~~~p~~~r~~p~~~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~ 182 (930)
.+|..+.++++++++.++|+|++.++++.+++ ..+||+||+.|++..++.++++++.++||++|++|+.|++||+...+
T Consensus 81 ~~s~~~~a~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~g~~~vaii~~~~~~g~~~~~ 160 (379)
T 3n0w_A 81 VNSGTALAINNLVKDKKKLAFITAAAADQIGGTECNGYGIGFLYNFTSIVKTVVQAQLAKGYKTWFLMLPDAAYGDLMNA 160 (379)
T ss_dssp CCHHHHHHHHHHHHHHTCEEEECSCCCTTTTTTTCCSSEEECSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCceEEEcCCCchhhhcccCCCcEEEEeCChHHHHHHHHHHHHHcCCcEEEEEecccchhHHHHH
Confidence 99999999999999999999999999998887 56899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcceEEEEEEecCCCCCCChhHHHHHHHHHHhCCceEEEEEcChhhHHHHHHHHHHcCcccCCeEEEEeCcch
Q 002364 183 ALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATDWLA 262 (930)
Q Consensus 183 ~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~~~ 262 (930)
.+++.+++.|++++....++.+ ..|+.+.+.++++.++|+|++.+.+.++..++++++++|+..+.+.+....++.
T Consensus 161 ~~~~~~~~~G~~v~~~~~~~~~----~~d~~~~l~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 236 (379)
T 3n0w_A 161 AIRRELTAGGGQIVGSVRFPFE----TQDFSSYLLQAKASGAQLIVSTSGGAANINIMKQAREFGLPSKTQKVGGMIDIL 236 (379)
T ss_dssp HHHHHHHHHTCEEEEEEEECTT----CCCCHHHHHHHHHHTCSEEEECCCHHHHHHHHHHHHHTTCSCSSCEEECCBCCH
T ss_pred HHHHHHHHcCCEEEEEEeCCCC----CCCHHHHHHHHHHCCCCEEEEecccchHHHHHHHHHHcCCCCCCcEEEecccch
Confidence 9999999999999988888866 678999999999999999999999999999999999999976544433333332
Q ss_pred hcccCCCCChhhhhccccEEEEEEecCC-ChhhHHHHHHHhhhcCCCCCCCchhHHHhHHHHHHHHHHHHHHhcCCccee
Q 002364 263 YMLDSASLPSETLESMQGVLVLRQHIPE-SDRKKNFLSRWKNLTGGSLGMNSYGLYAYDSVWLLAHAIESFFNQGGKISF 341 (930)
Q Consensus 263 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~YDav~~la~Al~~~~~~~~~~~~ 341 (930)
..+. ....+..+|++...++.++ ++..++|.++|+++| +..|+.++..+|||++++++|++++..
T Consensus 237 ~~~~-----~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~--g~~p~~~~~~~Yda~~~~~~Al~~ag~------- 302 (379)
T 3n0w_A 237 TDVK-----SAGLRVMQGQEYATSFYWNMDDRTRAFAKRFYAKM--GKMPTNNQAGGYSAALQYLKAVNAIGS------- 302 (379)
T ss_dssp HHHH-----HHCHHHHTTCEEEESCCTTSSHHHHHHHHHHHHHH--SSCCCHHHHHHHHHHHHHHHHHHHHTC-------
T ss_pred HHHH-----hhCHHhhCCeEEEeeecCCCCHHHHHHHHHHHHHH--CCCCChHHHHHHHHHHHHHHHHHHhCC-------
Confidence 2211 1123567888887776654 688999999999999 567889999999999999999999632
Q ss_pred cCCccccccCCCcccCCCccccCchHHHHHHHHhCcccccccc-eEEccCCCcccceEEEEEeeccc
Q 002364 342 SNDSRLKTMEGGNLHLGAMSIFDDGMLLLGNILQSNLVGLTGP-LKFNSDRSLIHAAYDIINVIGTG 407 (930)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~f~G~~G~-v~fd~~g~~~~~~~~I~~~~~~~ 407 (930)
.+++.|.++|++++|+|+.|. +.||+||++ ...+.|+++++++
T Consensus 303 ----------------------~~~~~v~~aL~~~~~~~~~G~~~~f~~~g~~-~~~~~i~~~~~~~ 346 (379)
T 3n0w_A 303 ----------------------KDPQKVFAYLKTIKFDDAVTRHGTLRPGGRL-VRDMYLVRAKKPE 346 (379)
T ss_dssp ----------------------CCHHHHHHHHTTCCBCSSSCCSBEECTTSBE-ECCEEEEEECCGG
T ss_pred ----------------------CCHHHHHHHHhcCCccccCCCceeECCCCCc-ccceEEEEEEchh
Confidence 148999999999999999986 999999984 5778899987543
No 28
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A
Probab=100.00 E-value=8.6e-37 Score=341.17 Aligned_cols=345 Identities=11% Similarity=0.140 Sum_probs=299.5
Q ss_pred CCceEEEEEEeeCCC---cchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCChHHHHHHHHHHHhc-CcEEEEcC
Q 002364 28 RPAVVNVGALFTLDS---TIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMET-DIVAIIGP 103 (930)
Q Consensus 28 ~~~~i~IG~i~~~s~---~~g~~~~~a~~~Av~~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~-~v~aiiGp 103 (930)
..++|+||+++|++. ..|.....|+++|++++| +++ +|+++++++.|+++++..+...+.+|+++ +|.+||||
T Consensus 13 ~~~~i~IG~~~p~sg~~~~~~~~~~~g~~~a~~~~n--g~~-~g~~~~l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig~ 89 (375)
T 4evq_A 13 QAGALKVGLLLPYSGTYAPLGEAITRGLELYVQSQG--GKL-GGRSISFVKVDDESAPPKATELTTKLIQSEKADVLIGT 89 (375)
T ss_dssp --CCEEEEEEECSSSTTHHHHHHHHHHHHHHHHHTT--TEE-TTEEEEEEEEECTTCHHHHHHHHHCCCCCSCCSEEEEC
T ss_pred hCCCeEEEEEeCCCCcchhcCHHHHHHHHHHHHHhC--CCc-CCEEEEEEEecCCCCHHHHHHHHHHHHhcCCceEEEcC
Confidence 456899999999984 457888999999999998 565 79999999999999999999999999986 99999999
Q ss_pred CChhHHHHHHHhhccCCCcEEecccCCCCCCC-CCCCceEeecCCchHHHHHHHHHHHhcCccEEEEEEEcCccccchHH
Q 002364 104 QCSTVAHIVSYVSNELQVPLLSFGVTDPTLSS-LQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVS 182 (930)
Q Consensus 104 ~~s~~~~~v~~~~~~~~iP~is~~a~~~~l~~-~~~p~~~r~~p~~~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~ 182 (930)
.++..+.++++++.+.++|+|++.++++.+++ ..+|++||+.|++..++.++++++.+.||++|++|+.++.+|+...+
T Consensus 90 ~~s~~~~~~~~~~~~~~iP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~~~~~~~~~ 169 (375)
T 4evq_A 90 VHSGVAMAMVKIAREDGIPTIVPNAGADIITRAMCAPNVFRTSFANGQIGRATGDAMIKAGLKKAVTVTWKYAAGEEMVS 169 (375)
T ss_dssp SSHHHHHHHHHHHHHHCCCEEESSCCCGGGGTTTCCTTEEESSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHH
T ss_pred CccHHHHHHHHHHHHcCceEEecCCCChhhcccCCCCCEEEeeCChHhHHHHHHHHHHHcCCcEEEEEecCchHHHHHHH
Confidence 99999999999999999999999988888877 45899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcceEEEEEEecCCCCCCChhHHHHHHHHHHhCCceEEEEEcChhhHHHHHHHHHHcCcccCCeEEEEeCcch
Q 002364 183 ALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATDWLA 262 (930)
Q Consensus 183 ~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~~~ 262 (930)
.+++++++.|+++.....++.+ ..++...++++++.++++|++.++...+..++++++++|+..+ |+.+++ .
T Consensus 170 ~~~~~l~~~G~~v~~~~~~~~~----~~d~~~~~~~l~~~~~dai~~~~~~~~a~~~~~~~~~~g~~vp---~~~~~~-~ 241 (375)
T 4evq_A 170 GFKKSFTAGKGEVVKDITIAFP----DVEFQSALAEIASLKPDCVYAFFSGGGALKFIKDYAAANLGIP---LWGPGF-L 241 (375)
T ss_dssp HHHHHHHHTTCEEEEEEEECTT----CCCCHHHHHHHHHHCCSEEEEECCTHHHHHHHHHHHHTTCCCC---EEEEGG-G
T ss_pred HHHHHHHHcCCeEEEEEecCCC----CccHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHHHcCCCce---EEecCc-C
Confidence 9999999999999887777765 6688889999998899999999999999999999999998643 555543 2
Q ss_pred hcccCCCCChhhhhccccEEEEEEecC--CChhhHHHHHHHhhhcCCCCCCCchhHHHhHHHHHHHHHHHHHHhcCCcce
Q 002364 263 YMLDSASLPSETLESMQGVLVLRQHIP--ESDRKKNFLSRWKNLTGGSLGMNSYGLYAYDSVWLLAHAIESFFNQGGKIS 340 (930)
Q Consensus 263 ~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~f~~~~~~~~~~~~~~~~~~~~~YDav~~la~Al~~~~~~~~~~~ 340 (930)
.. . .-....+..+|++...++.+ +++..++|.++|++++ +..|+.++..+|||++++++|++++...
T Consensus 242 ~~-~---~~~~~g~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~--~~~p~~~~~~~yda~~~~~~al~~~g~~----- 310 (375)
T 4evq_A 242 TD-G---VEAAAGPAGDGIKTVLHYVSDLDNAENQAFVKSFEAAY--KIPPDVFAVQGWDAGQLLDAGVKAVGGD----- 310 (375)
T ss_dssp TT-T---THHHHGGGGTTCEEEESCCTTCCSHHHHHHHHHHHHHH--SSCCCHHHHHHHHHHHHHHHHHHHTTTC-----
T ss_pred CH-H---HHHhhhhhcCCeEEeeccCCCCCCHHHHHHHHHHHHHH--CCCCcHHHHHHHHHHHHHHHHHHHhCCC-----
Confidence 11 1 11234467889998887765 4688999999999999 5678899999999999999999995221
Q ss_pred ecCCccccccCCCcccCCCccccCchHHHHHHHHhCcccccccceEEccCCCcccceEEEEEeeccceEEEEEEcCC
Q 002364 341 FSNDSRLKTMEGGNLHLGAMSIFDDGMLLLGNILQSNLVGLTGPLKFNSDRSLIHAAYDIINVIGTGFRMIGYWSNY 417 (930)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~f~G~~G~v~fd~~g~~~~~~~~I~~~~~~~~~~vg~w~~~ 417 (930)
+.+++.|.++|++++|+|++|+++||++|++ ...+.|+++++++|+.|+.+-+.
T Consensus 311 ----------------------~~~~~~l~~~l~~~~~~g~~G~i~f~~~g~~-~~~~~i~~~~~g~~~~v~~~~~~ 364 (375)
T 4evq_A 311 ----------------------VAKRKELNAAMAAASFASPRGPFKLSAAHNP-VQNFYLRELKGGKSVNLGLAAPA 364 (375)
T ss_dssp ----------------------TTCHHHHHHHHHTCEEEETTEEEEBCTTSCB-CCCEEEEEEETTEEEEEEEEECS
T ss_pred ----------------------CCCHHHHHHHHhcCCcccCCcceeECCCCCc-cccEEEEEEECCCcEEeeehhhc
Confidence 1248999999999999999999999999985 56899999999999999988553
No 29
>3eaf_A ABC transporter, substrate binding protein; PSI2, NYSGXRC, substrate binding P structural genomics, protein structure initiative; 2.00A {Aeropyrum pernix}
Probab=100.00 E-value=7.4e-37 Score=343.38 Aligned_cols=349 Identities=16% Similarity=0.155 Sum_probs=293.6
Q ss_pred CceEEEEEEeeCCC---cchhhHHHHHHHHHHHHhcCCCCC-CCC--EEEEEEecCCCChHHHHHHHHHHH-hcCcEEEE
Q 002364 29 PAVVNVGALFTLDS---TIGRVAKIAIEEAVKDVNSNSSIL-HGT--KLNITMQSSNCSGFIGMVEALRFM-ETDIVAII 101 (930)
Q Consensus 29 ~~~i~IG~i~~~s~---~~g~~~~~a~~~Av~~iN~~~~il-~g~--~l~l~~~D~~~~~~~a~~~a~~li-~~~v~aii 101 (930)
.++|+||+++|++. ..|.....|+++|+++||++||++ +|+ +|+++++|+++++..+.+.+.+|+ +++|.+||
T Consensus 2 ~~~i~IG~~~p~sG~~a~~g~~~~~g~~~a~~~iN~~ggi~~~G~~~~l~l~~~D~~~~~~~a~~~~~~li~~~~V~~ii 81 (391)
T 3eaf_A 2 SLTINVGLLVDETGPTSDVGKGYSLGAELAFKYFNEKGIYTKDGVRVNINYIKRDYAYNPTTAEEYYREFRDRYGVIAII 81 (391)
T ss_dssp CEEEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHHCEECTTCCEEEEEEEEEECTTCHHHHHHHHHHHHHTTCCSEEE
T ss_pred CccEEEEEEEcCCCchhhhhHHHHHHHHHHHHHHHHcCCCccCCeEEEEEEEEeCCCCCHHHHHHHHHHHHhhcCcEEEE
Confidence 36899999999984 357888999999999999999995 699 999999999999999999999999 56999999
Q ss_pred cCCChhHHHHHHHhhccCCCcEEecccCCCCCCCCCCCceEeecCCchHHHHHHHHHHHh-cCccEEEEEEE-cCccccc
Q 002364 102 GPQCSTVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSY-YGWNAVSVIFV-DNEYGRN 179 (930)
Q Consensus 102 Gp~~s~~~~~v~~~~~~~~iP~is~~a~~~~l~~~~~p~~~r~~p~~~~~~~ai~~~l~~-~~w~~v~ii~~-d~~~g~~ 179 (930)
| .+|..+.++++++++.++|+|++.++.+ +. .+|++||+.|++..++.++++++.+ +||++|++|+. |++||+.
T Consensus 82 G-~~s~~~~a~~~~~~~~~iP~i~~~~~~~-~~--~~~~~f~~~~~~~~~~~~~~~~l~~~~g~~~iaii~~~~~~~g~~ 157 (391)
T 3eaf_A 82 G-WGTADTEKLSDQVDTDKITYISASYSAK-LL--VKPFNFYPAPDYSTQACSGLAFLASEFGQGKLALAYDSKVAYSRS 157 (391)
T ss_dssp E-CCHHHHHHHHHHHHHHTCEEEESCCCGG-GT--TSTTEECSSCCHHHHHHHHHHHHHHHHCSEEEEEEECTTCHHHHT
T ss_pred E-cCcHHHHHHHHHHhhcCCeEEecccchh-hc--CCCcEEEeCCCHHHHHHHHHHHHHHhcCCCEEEEEEecCChhHHH
Confidence 9 6899999999999999999999776554 33 6799999999999999999999877 69999999999 9999999
Q ss_pred hHHHHHHHHhhcceEEEEEEecCCCCCCChhHHHHHHHH--HHhCCceEEEEEcChhhHHHHHHHHHHcCcccCCeEEEE
Q 002364 180 GVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVK--VALMESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIA 257 (930)
Q Consensus 180 ~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~--l~~~~~~viil~~~~~~~~~~~~~a~~~g~~~~~~~~i~ 257 (930)
..+.+++++++.|++++....++.+ ..|+...+.+ +++.++|+|++.+++..+..++++++++|+..+ ++.
T Consensus 158 ~~~~~~~~l~~~G~~v~~~~~~~~~----~~d~~~~~~~~~l~~~~~dav~~~~~~~~~~~~~~~~~~~g~~~~---~~~ 230 (391)
T 3eaf_A 158 PIGAIKKAAPSLGLQVVGDYDLPLR----ATEADAERIAREMLAADPDYVWCGNTISSCSLLGRAMAKVGLDAF---LLT 230 (391)
T ss_dssp THHHHHHHTGGGTEEEEEEEECCTT----CCHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHHHHHHTCCCE---EEE
T ss_pred HHHHHHHHHHHcCCceeeeeccCCC----CcCHHHHHHHHHHHHcCCCEEEEecCcHHHHHHHHHHHHCCCCce---EEE
Confidence 9999999999999999988888766 7799999999 999999999999999999999999999998543 555
Q ss_pred eCcchhcccCCCCChhhhhcccc-EEEEEEec-----CCChhhHHHHHHHhhhcCCCCCC--CchhHHHhHHHHHHHHHH
Q 002364 258 TDWLAYMLDSASLPSETLESMQG-VLVLRQHI-----PESDRKKNFLSRWKNLTGGSLGM--NSYGLYAYDSVWLLAHAI 329 (930)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~-----~~~~~~~~f~~~~~~~~~~~~~~--~~~~~~~YDav~~la~Al 329 (930)
+++..... ......+..+| ++...++. ++.+. .+|.++|+++|+ ...| +.++..+|||++++++|+
T Consensus 231 ~~~~~~~~----~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~-~~f~~~~~~~~~-~~~p~~~~~~~~~yda~~~l~~Al 304 (391)
T 3eaf_A 231 NVWGFDER----SPQLIGEGGYGKVFGISPFIYPMFGQDVEG-IQTIFEAARMNG-VSEDQINLRVVQGFVNVWLLIKAI 304 (391)
T ss_dssp CGGGCSTT----HHHHHCGGGTTSEEEEESBCCGGGCTTCHH-HHHHHHHHHHTT-CCGGGCCHHHHHHHHHHHHHHHHH
T ss_pred eccCCCHH----HHHhhhhhccCcEEEEEEecCcccCCCCch-hHHHHHHHHHhC-CCCcccccHHHHHHHHHHHHHHHH
Confidence 54432211 11233456889 88777765 34454 679999999982 1334 488999999999999999
Q ss_pred HHHHhcCCcceecCCccccccCCCcccCCCccccCchHHHHHHHHhCccc--cccc-ceEEccCCCcccceEEEEEe-ec
Q 002364 330 ESFFNQGGKISFSNDSRLKTMEGGNLHLGAMSIFDDGMLLLGNILQSNLV--GLTG-PLKFNSDRSLIHAAYDIINV-IG 405 (930)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~f~--G~~G-~v~fd~~g~~~~~~~~I~~~-~~ 405 (930)
+++...+.. ..+++.|.++|++..|+ |++| +++||++|++....+.|.++ ++
T Consensus 305 ~~a~~~g~~------------------------~~~~~~v~~aL~~~~~~~~G~~G~~i~f~~~~~~~~~~~~i~~~~~~ 360 (391)
T 3eaf_A 305 ESVTSQDLQ------------------------ERGGEALKEALEANTFDLGGITADTIDYEPGFHLAYRKVFIIKLGEN 360 (391)
T ss_dssp TTSCHHHHH------------------------HHTHHHHHHHHHHCCBCSTTCBSSCBCCBTTBCCCCCCEEEEEECTT
T ss_pred HHHHhcCCC------------------------CCCHHHHHHHHHhCCCCCCCccccceeeCCCCCCcceEEEEEEEecC
Confidence 986211000 01389999999998898 9999 99999877667888999999 89
Q ss_pred cceEEEEEEcCCC
Q 002364 406 TGFRMIGYWSNYS 418 (930)
Q Consensus 406 ~~~~~vg~w~~~~ 418 (930)
++|+.|+.|+...
T Consensus 361 G~~~~v~~~~~~~ 373 (391)
T 3eaf_A 361 GELQLMGKFEAPS 373 (391)
T ss_dssp SSEEEEEEECCCT
T ss_pred CEEEEeeeecCcc
Confidence 9999999997644
No 30
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=100.00 E-value=1.5e-36 Score=338.35 Aligned_cols=346 Identities=14% Similarity=0.168 Sum_probs=295.4
Q ss_pred CCceEEEEEEeeCCC---cchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCChHHHHHHHHHHHh-cCcEEEEcC
Q 002364 28 RPAVVNVGALFTLDS---TIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFME-TDIVAIIGP 103 (930)
Q Consensus 28 ~~~~i~IG~i~~~s~---~~g~~~~~a~~~Av~~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~-~~v~aiiGp 103 (930)
+.++|+||+++|++. ..|.....|+++|++++|. ++ +|++|+++++|+++++..+...+.+|++ ++|.+||||
T Consensus 3 a~~~i~IG~~~p~sg~~~~~g~~~~~g~~~a~~~~~~--~i-~G~~i~l~~~D~~~~~~~~~~~~~~li~~~~v~~iiG~ 79 (368)
T 4eyg_A 3 AEDTFKVGLIVPMTGGQASTGKQIDNAIKLYIKKHGD--TV-AGKKIEVILKDDAAIPDNTKRLAQELIVNDKVNVIAGF 79 (368)
T ss_dssp -CCEEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHCS--EE-TTEEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEEEC
T ss_pred CCCcEEEEEEeCCcCcchhccHHHHHHHHHHHHHcCC--CC-CCeEEEEEEeCCCCCHHHHHHHHHHHHhcCCcEEEECC
Confidence 356899999999984 3478899999999999973 35 6999999999999999999999999998 699999999
Q ss_pred CChhHHHHHHHhhccCCCcEEecccCCCCCCCCCCCceEeecCCchHHHHHHHHHHHhcCccEEEEEEEcCccccchHHH
Q 002364 104 QCSTVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSA 183 (930)
Q Consensus 104 ~~s~~~~~v~~~~~~~~iP~is~~a~~~~l~~~~~p~~~r~~p~~~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~ 183 (930)
.++..+.++++++.+.++|+|++.++++.+++. +||+||+.|++..++.++++++.++||+++++|+.|+.+|+...+.
T Consensus 80 ~~s~~~~~~~~~~~~~~ip~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~~~g~~~~~~ 158 (368)
T 4eyg_A 80 GITPAALAAAPLATQAKVPEIVMAAGTSIITER-SPYIVRTSFTLAQSSIIIGDWAAKNGIKKVATLTSDYAPGNDALAF 158 (368)
T ss_dssp SSHHHHHHHHHHHHHHTCCEEESSCCCGGGGGG-CTTEEESSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHH
T ss_pred CccHHHHHHHHHHHhCCceEEeccCCChhhccC-CCCEEEecCChHHHHHHHHHHHHHcCCCEEEEEecCchHhHHHHHH
Confidence 999999999999999999999998888877765 7999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcceEEEEEEecCCCCCCChhHHHHHHHHHHhCCceEEEEEcChhhHHHHHHHHHHcCcccCCeEEEEeCcchh
Q 002364 184 LNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATDWLAY 263 (930)
Q Consensus 184 l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~~~~ 263 (930)
+++.+++.|+++.....++.+ ..|+...+.++++.++|+|++.+.+..+..++++++++|+..+++.|++++++..
T Consensus 159 ~~~~l~~~g~~v~~~~~~~~~----~~d~~~~~~~l~~~~~d~v~~~~~~~~a~~~~~~~~~~g~~~~~v~~~~~~~~~~ 234 (368)
T 4eyg_A 159 FKERFTAGGGEIVEEIKVPLA----NPDFAPFLQRMKDAKPDAMFVFVPAGQGGNFMKQFAERGLDKSGIKVIGPGDVMD 234 (368)
T ss_dssp HHHHHHHTTCEEEEEEEECSS----SCCCHHHHHHHHHHCCSEEEEECCTTCHHHHHHHHHHTTGGGTTCEEEEETTTTC
T ss_pred HHHHHHHcCCEEEEEEeCCCC----CCcHHHHHHHHHhcCCCEEEEeccchHHHHHHHHHHHcCCCcCCceEEecCcccC
Confidence 999999999999988888766 6788899999999999999998888899999999999999766578888874332
Q ss_pred cccCCCCChhhhhccccEEEEEEecC--CChhhHHHHHHHhhhcCCCCCCCchhHHHhHHHHHHHHHHHHHHhcCCccee
Q 002364 264 MLDSASLPSETLESMQGVLVLRQHIP--ESDRKKNFLSRWKNLTGGSLGMNSYGLYAYDSVWLLAHAIESFFNQGGKISF 341 (930)
Q Consensus 264 ~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~f~~~~~~~~~~~~~~~~~~~~~YDav~~la~Al~~~~~~~~~~~~ 341 (930)
.... ....+..+|++...++.+ .++..++|.++| ++| ++..++.++..+|||++++++|++++.. .
T Consensus 235 ~~~~----~~~g~~~~g~~~~~~~~~~~~~~~~~~f~~~~-~~~-~~~~p~~~~~~~yda~~~~~~al~~~g~---~--- 302 (368)
T 4eyg_A 235 DDLL----NSMGDAALGVVTAHMYSAAHPSAMNKEFVAAY-KKE-FGQRPGFMAVGGYDGIHLVFEALKKTGG---K--- 302 (368)
T ss_dssp HHHH----TTCCGGGTTCEEEESCCTTCCSHHHHHHHHHH-HHH-HSSCCCHHHHHHHHHHHHHHHHHHHTTT---C---
T ss_pred HHHH----HhhhhhhCCeEEeeecCCCCCCHHHHHHHHHH-HHh-CCCCCChHHHHHHHHHHHHHHHHHHhCC---C---
Confidence 2111 122356788888877754 468899999999 777 2457889999999999999999999531 1
Q ss_pred cCCccccccCCCcccCCCccccCchHHHHHHHHhCcccccccceEEc-cCCCcccceEEEEEee--ccceEE--EEEEcC
Q 002364 342 SNDSRLKTMEGGNLHLGAMSIFDDGMLLLGNILQSNLVGLTGPLKFN-SDRSLIHAAYDIINVI--GTGFRM--IGYWSN 416 (930)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~f~G~~G~v~fd-~~g~~~~~~~~I~~~~--~~~~~~--vg~w~~ 416 (930)
.+++.|.++|++++|+|++|+++|| ++|+ ....+.|.+++ +++|+. ++.|.+
T Consensus 303 ----------------------~~~~~l~~al~~~~~~g~~G~i~f~~~~~~-~~~~~~i~~~~~~~G~~~~v~~~~~~~ 359 (368)
T 4eyg_A 303 ----------------------ADGDSLIAAMKGMKWESPRGPISIDPETRD-IVQNIYIRKVEKVDGELYNIEFAKFDA 359 (368)
T ss_dssp ----------------------CSHHHHHHHHTTCEEEETTEEEEECTTTCC-EEEEEEEEEEEEETTEEEEEEEEEEEE
T ss_pred ----------------------CCHHHHHHHHHcCCcccCCCCeEECcccCC-cccceEEEEEEecCCeEEEEEeecccc
Confidence 1389999999999999999999999 5666 57788899998 777755 455543
No 31
>3n0x_A Possible substrate binding protein of ABC transpo system; receptor family ligand binding region, structural genomics; HET: MSE; 1.50A {Rhodopseudomonas palustris} PDB: 3nnd_B
Probab=100.00 E-value=7.1e-37 Score=341.18 Aligned_cols=330 Identities=10% Similarity=0.101 Sum_probs=275.2
Q ss_pred ceEEEEEEeeCCC---cchhhHHHHHHHHHHHHhc-CCCCCCCCEEEEEEecCCCChHHHHHHHHHHHhc-CcEEEEcCC
Q 002364 30 AVVNVGALFTLDS---TIGRVAKIAIEEAVKDVNS-NSSILHGTKLNITMQSSNCSGFIGMVEALRFMET-DIVAIIGPQ 104 (930)
Q Consensus 30 ~~i~IG~i~~~s~---~~g~~~~~a~~~Av~~iN~-~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~-~v~aiiGp~ 104 (930)
++|+||+++|++. ..|.....|+++|++++|+ .||+ .|++|+++++|+++++..++..+++|+++ +|.+||||.
T Consensus 3 ~~i~IG~~~plsG~~a~~g~~~~~g~~lA~~~iN~~~ggi-~G~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~aiiG~~ 81 (374)
T 3n0x_A 3 DDLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTL-DGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAIGTS 81 (374)
T ss_dssp -CEEEEEEECCSSTTHHHHHHHHHHHHHHHHHHTTTCCEE-TTEEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEEECS
T ss_pred CCEEEEEecCCCCchhhhCHHHHHHHHHHHHHHhccCCCc-CCEEEEEEEecCCCCHHHHHHHHHHHHHhCCceEEEcCC
Confidence 5899999999994 4578999999999999998 6777 59999999999999999999999999985 899999999
Q ss_pred ChhHHHHHHHhhccCCCcEEecccCCCCCCC-CCCCceEeecCCchHHHHHHHHHHHhcCccEEEEEEEcCccccchHHH
Q 002364 105 CSTVAHIVSYVSNELQVPLLSFGVTDPTLSS-LQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSA 183 (930)
Q Consensus 105 ~s~~~~~v~~~~~~~~iP~is~~a~~~~l~~-~~~p~~~r~~p~~~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~ 183 (930)
+|..+.+++++++++++|+|++.++++.+++ ..+||+||+.|++..++.+++.++++++| +|++|+.|++||+...+.
T Consensus 82 ~s~~~~a~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~fr~~~~~~~~~~~~~~~~~~~~~-~v~ii~~~~~~g~~~~~~ 160 (374)
T 3n0x_A 82 SSAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAIGKQGV-TIATLAQDYAFGRDGVAA 160 (374)
T ss_dssp SHHHHHHHHHHHHHHTCCEEECSCCCGGGGTTTCCTTEEECSCCHHHHHHHHHHHHCCTTE-EEEEEEESSHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCccEEEcCCCchhhhcCCCCCeEEEccCCchhHHHHHHHHHhccCC-EEEEEeCCchHHHHHHHH
Confidence 9999999999999999999998888888887 45899999999999999999988888998 899999999999999999
Q ss_pred HHHHHhhcceEEEEEEecCCCCCCChhHHHHHHHHHHhCC-----ceEEEEEcChhhHHHHHHHHHHcCcccCCeEEEEe
Q 002364 184 LNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALME-----SRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIAT 258 (930)
Q Consensus 184 l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~-----~~viil~~~~~~~~~~~~~a~~~g~~~~~~~~i~~ 258 (930)
+++.+++.|++|+....++.+ ..|+.+++.+|++.+ +|+|++...+... .+.++.++++...++.+...
T Consensus 161 ~~~~~~~~G~~vv~~~~~~~~----~~d~~~~l~~i~~~~~~~~~~d~v~~~~~g~~~--~~~~~~~~~~~~~g~~~~~~ 234 (374)
T 3n0x_A 161 FKEALAKTGATLATEEYVPTT----TTDFTAVGQRLFDALKDKPGKKIIWVIWAGGGD--PLTKLQDMDPKRYGIELSTG 234 (374)
T ss_dssp HHHHHTTTTCEEEEEEEECTT----CCCCHHHHHHHHHHHTTCSSEEEEEECCCSSSC--HHHHHHHTCGGGGTEEEEEC
T ss_pred HHHHHHHcCCEEeeeecCCCC----CccHHHHHHHHHhcCCCCCCCCEEEEEecCCcH--HHHHHHHcchhhcCCeeeec
Confidence 999999999999998888876 778999999999988 9999987444222 24556666665555555443
Q ss_pred CcchhcccCCCCChhhhhccccEEEEEEec---CCChhhHHHHHHHhhhcCCCCCCCchhHHHhHHHHHHHHHHHHHHhc
Q 002364 259 DWLAYMLDSASLPSETLESMQGVLVLRQHI---PESDRKKNFLSRWKNLTGGSLGMNSYGLYAYDSVWLLAHAIESFFNQ 335 (930)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~YDav~~la~Al~~~~~~ 335 (930)
+..... ........|+.+...+. ++++..++|.++|+++| +..|+.++..+|||++++++|++++..
T Consensus 235 ~~~~~~-------~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~y~~~~--g~~p~~~a~~~Yda~~~l~~Al~~ag~- 304 (374)
T 3n0x_A 235 GNILPA-------LAAYKRLPGMEGATYYYYDIPKNPINEWLVTEHQKRF--NAPPDFFTAGGFSAAMAVVTAVQKAKS- 304 (374)
T ss_dssp CCCTTG-------GGGGGGSTTCEEEESCCTTSCCSHHHHHHHHHHHHHH--SSCCCHHHHHHHHHHHHHHHHHHHHTS-
T ss_pred cccchh-------hhhhhhhcCccccceeccCCCCCHHHHHHHHHHHHHH--CCCCChhHHHHHHHHHHHHHHHHHhCC-
Confidence 321111 11123456666665543 45688899999999999 567889999999999999999999632
Q ss_pred CCcceecCCccccccCCCcccCCCccccCchHHHHHHHHhCcccccccceEEccCCCcccceEEEEEeec
Q 002364 336 GGKISFSNDSRLKTMEGGNLHLGAMSIFDDGMLLLGNILQSNLVGLTGPLKFNSDRSLIHAAYDIINVIG 405 (930)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~f~G~~G~v~fd~~g~~~~~~~~I~~~~~ 405 (930)
.+++.|.++|++++|+|++|+++||++++.....+.|++++.
T Consensus 305 ----------------------------~~~~~v~~aL~~~~~~g~~G~i~f~~~~~~~~~~~~i~~~~~ 346 (374)
T 3n0x_A 305 ----------------------------TDTEKLIAAMEGMEFDTPKGKMVFRKEDHQALQSMYHFKVKV 346 (374)
T ss_dssp ----------------------------CCHHHHHHHHTTCEEEETTEEEEECTTTCBEECCEEEEEEEC
T ss_pred ----------------------------CCHHHHHHHHhcCCccCCCCCEEECcccCccccceEEEEEEe
Confidence 148999999999999999999999975444677889999874
No 32
>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum}
Probab=100.00 E-value=2.2e-36 Score=336.14 Aligned_cols=339 Identities=12% Similarity=0.091 Sum_probs=291.1
Q ss_pred CceEEEEEEeeCCC---cchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCChHHHHHHHHHHHhc-CcEEEEcCC
Q 002364 29 PAVVNVGALFTLDS---TIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMET-DIVAIIGPQ 104 (930)
Q Consensus 29 ~~~i~IG~i~~~s~---~~g~~~~~a~~~Av~~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~-~v~aiiGp~ 104 (930)
+++|+||+++|++. ..|.....|+++|++++|++||++ |++++++++|+++++..+.+.+++|+++ +|.+||||.
T Consensus 3 ~~~i~IG~~~p~sG~~~~~g~~~~~g~~~a~~~~N~~ggi~-G~~i~l~~~D~~~~~~~~~~~~~~l~~~~~v~~iig~~ 81 (364)
T 3lop_A 3 LADISVIQSLPLSGSQAVTGRALNAGARLYFDWLNLNGGIN-GETIRLVARDDEQKIEQTVRNVRDMARVDNPVALLTVV 81 (364)
T ss_dssp --CEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHTTTBT-TBCEEEEEEECTTCHHHHHHHHHHHHHHSCEEEEECCC
T ss_pred CCeEEEEEEecCCCcchhccHHHHHHHHHHHHHHHhcCCcC-CeEEEEEEeCCCCCHHHHHHHHHHHHhhcCcEEEEecC
Confidence 46899999999973 457788999999999999999995 9999999999999999999999999996 999999999
Q ss_pred ChhHHHHHHH--hhccCCCcEEecccCCCCCCCCCCCceEeecCCchHHHHHHHHHHHhcCccEEEEEEEcCccccchHH
Q 002364 105 CSTVAHIVSY--VSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVS 182 (930)
Q Consensus 105 ~s~~~~~v~~--~~~~~~iP~is~~a~~~~l~~~~~p~~~r~~p~~~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~ 182 (930)
++..+.++++ ++.+.++|+|++.++++.+++ +|++||+.|++..++.++++++.++||++|++|+.+++||+...+
T Consensus 82 ~s~~~~~~~~~~~~~~~~iP~v~~~~~~~~~~~--~~~~f~~~~~~~~~~~~~~~~l~~~g~~~iaii~~~~~~g~~~~~ 159 (364)
T 3lop_A 82 GTANVEALMREGVLAEARLPLVGPATGASSMTT--DPLVFPIKASYQQEIDKMITALVTIGVTRIGVLYQEDALGKEAIT 159 (364)
T ss_dssp CHHHHHHHHHTTHHHHHTCCEESCSCCCGGGGS--CTTEECCSCCHHHHHHHHHHHHHHTTCCCEEEEEETTHHHHHHHH
T ss_pred CCHHHHhhCchhhHHhcCCcEEEcccCcHhhcc--CCcEEEeCCChHHHHHHHHHHHHHcCCceEEEEEeCchhhHHHHH
Confidence 9999999999 999999999999888877765 899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcceEEEEEEecCCCCCCChhHHHHHHHHHHhCCceEEEEEcChhhHHHHHHHHHHcCcccCCeEEEEeCcch
Q 002364 183 ALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATDWLA 262 (930)
Q Consensus 183 ~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~~~ 262 (930)
.+++++++.|+++.....++.+ ..++...+.++++.++++|+++++...+..++++++++|+..+ |++.+++.
T Consensus 160 ~~~~~~~~~G~~v~~~~~~~~~----~~d~~~~~~~l~~~~~d~v~~~~~~~~a~~~~~~~~~~g~~~~---~i~~~~~~ 232 (364)
T 3lop_A 160 GVERTLKAHALAITAMASYPRN----TANVGPAVDKLLAADVQAIFLGATAEPAAQFVRQYRARGGEAQ---LLGLSSID 232 (364)
T ss_dssp HHHHHHHTTTCCCSEEEEECTT----SCCCHHHHHHHHHSCCSEEEEESCHHHHHHHHHHHHHTTCCCE---EEECTTSC
T ss_pred HHHHHHHHcCCcEEEEEEecCC----CccHHHHHHHHHhCCCCEEEEecCcHHHHHHHHHHHHcCCCCe---EEEeccCC
Confidence 9999999999998877777765 6788999999999999999999999999999999999998654 67766544
Q ss_pred hcccCCCCChhhh-hccccEEEEEEe----cCCChhhHHHHHHHhhhcCCCCCCCchhHHHhHHHHHHHHHHHHHHhcCC
Q 002364 263 YMLDSASLPSETL-ESMQGVLVLRQH----IPESDRKKNFLSRWKNLTGGSLGMNSYGLYAYDSVWLLAHAIESFFNQGG 337 (930)
Q Consensus 263 ~~~~~~~~~~~~~-~~~~g~~~~~~~----~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~YDav~~la~Al~~~~~~~~ 337 (930)
..... .... +..+|++....+ .+..+..++|.++|+++++....|+.++..+|||++++++|++++..
T Consensus 233 ~~~~~----~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~p~~~a~~~yda~~~~~~al~~ag~--- 305 (364)
T 3lop_A 233 PGILQ----KVAGLDAVRGYSLALVMPNPGKSVNPVIREFNRARAAVGAKDVDLSFRAVEGFVAAKVLAEAIRRAGP--- 305 (364)
T ss_dssp HHHHH----HHHCHHHHTTCEEEECSCCTTCTTSHHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHHHCS---
T ss_pred hHHHH----HHhChhhcCCeEEEEEeCCCCCCCCHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHhCC---
Confidence 32111 2233 567888776532 24678899999999999822127889999999999999999999621
Q ss_pred cceecCCccccccCCCcccCCCccccCchHHHHHHHHhC-cccc-cccceEEccCCCcccceEEEEEeeccceE
Q 002364 338 KISFSNDSRLKTMEGGNLHLGAMSIFDDGMLLLGNILQS-NLVG-LTGPLKFNSDRSLIHAAYDIINVIGTGFR 409 (930)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~-~f~G-~~G~v~fd~~g~~~~~~~~I~~~~~~~~~ 409 (930)
. .+++.|.++|+++ .|+| .+|+++|+++++.......|.+++++++.
T Consensus 306 ~-------------------------~~~~~v~~aL~~~~~~~~~~~g~i~f~~~~~~~~~~~~i~~~~~~~~~ 354 (364)
T 3lop_A 306 K-------------------------PTREQVRHALTELRDYDVGGGFTVDFTDRSRPGSHYIELGVVGPNGLV 354 (364)
T ss_dssp S-------------------------CCHHHHHHHHHTCEEEESSTTCEEECSSTTSCSCCCCEEEEECTTSCE
T ss_pred C-------------------------CCHHHHHHHHHhcCCccCCCCeeeecCCCCcCCcceEEEEEEcCCCcc
Confidence 1 1489999999999 6999 99999999988766677788888876654
No 33
>3sg0_A Extracellular ligand-binding receptor; structural genomics, PSI-biology; HET: 173; 1.20A {Rhodopseudomonas palustris} PDB: 4dqd_A*
Probab=100.00 E-value=2.1e-35 Score=331.34 Aligned_cols=343 Identities=14% Similarity=0.194 Sum_probs=287.2
Q ss_pred CCceEEEEEEeeCCCc---chhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCChHHHHHHHHHHHhc-CcEEEEcC
Q 002364 28 RPAVVNVGALFTLDST---IGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMET-DIVAIIGP 103 (930)
Q Consensus 28 ~~~~i~IG~i~~~s~~---~g~~~~~a~~~Av~~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~-~v~aiiGp 103 (930)
..++|+||+++|++.. .|.....|+++|++++| |+++++++.|+++++..+.+.+++|+++ +|.+||||
T Consensus 24 a~~~i~IG~~~p~sg~~~~~g~~~~~g~~~a~~~i~-------G~~i~l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig~ 96 (386)
T 3sg0_A 24 AQAEIKIGITMSASGPGAALGQPQSKTVAALPKEIG-------GEKVTYFALDDESDPTKAAQNARKLLSEEKVDVLIGS 96 (386)
T ss_dssp -CCCEEEEEEECCSSTTHHHHHHHHHHGGGSCSEET-------TEEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEECC
T ss_pred CCCceEEEEEeccCCchhhhcHHHHHHHHHHHHHcC-------CEEEEEEEecCCCCHHHHHHHHHHHHhhcCceEEECC
Confidence 3568999999999854 57788999999999883 7999999999999999999999999998 89999999
Q ss_pred CChhHHHHHHHhhccCCCcEEecccCCCCCC--CCCCCceEeecCCchHHHHHHHHHHHhcCccEEEEEEEcCccccchH
Q 002364 104 QCSTVAHIVSYVSNELQVPLLSFGVTDPTLS--SLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGV 181 (930)
Q Consensus 104 ~~s~~~~~v~~~~~~~~iP~is~~a~~~~l~--~~~~p~~~r~~p~~~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~ 181 (930)
.++..+.++.+++.+.++|+|++.++++.++ ...+||+||+.|++..++.++++++.++||++|++|+.++.||+...
T Consensus 97 ~~s~~~~~~~~~~~~~~ip~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~~~~~~~~ 176 (386)
T 3sg0_A 97 SLTPVSLPLIDIAAEAKTPLMTMAAAAILVAPMDERRKWVYKVVPNDDIMAEAIGKYIAKTGAKKVGYIGFSDAYGEGYY 176 (386)
T ss_dssp SSHHHHHHHHHHHHHTTCCEEECCCCGGGTCSCCTTGGGEEECSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHH
T ss_pred CCchhHHHHHHHHHhcCCeEEEecCCCccccccCCCCCcEEecCCCcHHHHHHHHHHHHhcCCCEEEEEecCchHHHHHH
Confidence 9999999999999999999999988887776 35689999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcceEEEEEEecCCCCCCChhHHHHHHHHHHhCCceEEEEEcChhhHHHHHHHHHHcCcccCCeEEEEeCcc
Q 002364 182 SALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATDWL 261 (930)
Q Consensus 182 ~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~~ 261 (930)
+.+++.+++.|++++....++.+ ..++...+.++++.++|+|++.+++..+..++++++++|+..+ ++..+++
T Consensus 177 ~~~~~~l~~~g~~v~~~~~~~~~----~~d~~~~~~~~~~~~~dav~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~~ 249 (386)
T 3sg0_A 177 KVLAAAAPKLGFELTTHEVYARS----DASVTGQVLKIIATKPDAVFIASAGTPAVLPQKALRERGFKGA---IYQTHGV 249 (386)
T ss_dssp HHHHHHHHHHTCEECCCEEECTT----CSCCHHHHHHHHHTCCSEEEEECCSGGGHHHHHHHHHTTCCSE---EECCGGG
T ss_pred HHHHHHHHHcCCEEEEEEeeCCC----CCcHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHHHcCCCCc---EEecccc
Confidence 99999999999998876677765 6788899999999999999999998999999999999998643 5665544
Q ss_pred hhcccCCCCChhhhhccccEEEEEEe------cC-CC---hhhHHHHHHHhhhcCCCCCCCchhHHHhHHHHHHHHHHHH
Q 002364 262 AYMLDSASLPSETLESMQGVLVLRQH------IP-ES---DRKKNFLSRWKNLTGGSLGMNSYGLYAYDSVWLLAHAIES 331 (930)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~g~~~~~~~------~~-~~---~~~~~f~~~~~~~~~~~~~~~~~~~~~YDav~~la~Al~~ 331 (930)
...... ....+..+|++....+ .+ .+ +..++|.++|+++| +...++.++..+|||++++++|+++
T Consensus 250 ~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~-~~~~p~~~~~~~yda~~~~~~al~~ 324 (386)
T 3sg0_A 250 ATEEFI----KLGGKDVEGAIFAGEAFSGAEDMPADSPFRKVKARFVDAYKAAN-GGAAPTIFGVHLWDSMTLVENAIPA 324 (386)
T ss_dssp CSHHHH----HHHGGGGTTCEEEECHHHHGGGSCTTCHHHHHHHHHHHHHHHHT-TTCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHH----HhhhhhcCCeEEecccccccccCCCCCcchHHHHHHHHHHHHHh-CCCCCChhHHHHHHHHHHHHHHHHH
Confidence 332111 2234567888876642 12 22 45789999999998 3336789999999999999999999
Q ss_pred HHhcCCcceecCCccccccCCCcccCCCccccCchHHHHHHHHhC-cccccccceEEccCCCc--ccceEEEEEeeccce
Q 002364 332 FFNQGGKISFSNDSRLKTMEGGNLHLGAMSIFDDGMLLLGNILQS-NLVGLTGPLKFNSDRSL--IHAAYDIINVIGTGF 408 (930)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~-~f~G~~G~v~fd~~g~~--~~~~~~I~~~~~~~~ 408 (930)
+.+.... +.+.+++.|.++|+++ .|+|++|+++|+++++. ....+.|+++++++|
T Consensus 325 a~~~~~~----------------------g~~~~~~~~~~al~~~~~~~g~~G~~~f~~~~~~g~~~~~~~i~~~~~G~~ 382 (386)
T 3sg0_A 325 ALKAAKP----------------------GTPEFRAAIRDQIEKSKDLALNNGLSNMTPDNHNGYDERSAFLIEIRDGAF 382 (386)
T ss_dssp HHHHCCT----------------------TSHHHHHHHHHHHTTCCSEEETTEEECCCSSCSSCCCGGGCEEEEEETTEE
T ss_pred hhhccCC----------------------CCcchHHHHHHHHHhccCccccceeEEECCCcCCCCCCCceEEEEEECCEE
Confidence 8654210 0122478999999999 89999999999987553 345689999999988
Q ss_pred EEE
Q 002364 409 RMI 411 (930)
Q Consensus 409 ~~v 411 (930)
+.+
T Consensus 383 ~~~ 385 (386)
T 3sg0_A 383 RLK 385 (386)
T ss_dssp EEC
T ss_pred Eec
Confidence 765
No 34
>1pea_A Amidase operon; gene regulator, receptor, binding protein; 2.10A {Pseudomonas aeruginosa} SCOP: c.93.1.1 PDB: 1qo0_A 1qnl_A
Probab=100.00 E-value=1.9e-33 Score=314.79 Aligned_cols=347 Identities=12% Similarity=0.052 Sum_probs=285.3
Q ss_pred CCceEEEEEEeeCCCc---chhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCChHHHHHHHHHHHh-cCcEEEEcC
Q 002364 28 RPAVVNVGALFTLDST---IGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFME-TDIVAIIGP 103 (930)
Q Consensus 28 ~~~~i~IG~i~~~s~~---~g~~~~~a~~~Av~~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~-~~v~aiiGp 103 (930)
.+++++||+++|++.. ++.....|+++|++++|++||++ |+++++++.|+++++..+.+.+.+|++ ++|.+||||
T Consensus 4 ~~~~~~IG~~~p~sg~~~~~~~~~~~g~~~a~~~~N~~ggi~-G~~l~l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig~ 82 (385)
T 1pea_A 4 HQERPLIGLLFSETGVTADIERSQRYGALLAVEQLNREGGVG-GRPIETLSQDPGGDPDRYRLCAEDFIRNRGVRFLVGC 82 (385)
T ss_dssp ----CEEEEECCSSSTTHHHHHHHHHHHHHHHHHHHTTTTBT-TBCCEEEEECCTTCHHHHHHHHHHHHHTTCCCEEEEC
T ss_pred CCCCeEEEEEECCCCcchhcCHHHHHHHHHHHHHhccccCCC-CeEEEEEEeCCCCCHHHHHHHHHHHHhhCCcEEEECC
Confidence 3568999999998743 57788999999999999999995 999999999999999999999999997 699999999
Q ss_pred CChhHHHHHHHhhccCCCcEEecccCCCCCCCCCCCceEeecCCchHHHHHHHHHHHhcCccEEEEEEEcCccccchHHH
Q 002364 104 QCSTVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSA 183 (930)
Q Consensus 104 ~~s~~~~~v~~~~~~~~iP~is~~a~~~~l~~~~~p~~~r~~p~~~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~ 183 (930)
.++..+.++.+++.+.++|+|++.++.. ...++++||+.+++..++..+++++.+.+|++|++|+.++.|++...+.
T Consensus 83 ~~s~~~~~~~~~~~~~~iP~v~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~~~~~~~~~~ 159 (385)
T 1pea_A 83 YMSHTRKAVMPVVERADALLCYPTPYEG---FEYSPNIVYGGPAPNQNSAPLAAYLIRHYGERVVFIGSDYIYPRESNHV 159 (385)
T ss_dssp CSHHHHHHHHHHHHHTTCEEEECSCCCC---CCCCTTEEECSCCGGGTHHHHHHHHHTTTCSEEEEEEESSHHHHHHHHH
T ss_pred CchHHHHHHHHHHHhcCceEEECCcccC---ccCCCCEEEecCChHHhHHHHHHHHHHccCcEEEEEeCCChHHHHHHHH
Confidence 9998888999999999999999765421 1246899999999999999999999999999999999988899999999
Q ss_pred HHHHHhhcceEEEEEEecCCCCCCChhHHHHHHHHHHhCCceEEEEEcChhhHHHHHHHHHHcCcccCCeEEEEeCcchh
Q 002364 184 LNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATDWLAY 263 (930)
Q Consensus 184 l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~~~~ 263 (930)
+++++++.|+++.....++.. ....++...++++++.++++|++.++...+..++++++++|+....+.++..++...
T Consensus 160 ~~~~l~~~G~~v~~~~~~~~~--~~~~d~~~~~~~l~~~~pdaI~~~~~~~~a~~~~~~~~~~G~~~~~~~~~~~~~~~~ 237 (385)
T 1pea_A 160 MRHLYRQHGGTVLEEIYIPLY--PSDDDLQRAVERIYQARADVVFSTVVGTGTAELYRAIARRYGDGRRPPIASLTTSEA 237 (385)
T ss_dssp HHHHHHHTTCEEEEEEEECSS--CCHHHHHHHHHHHHHHTCSEEEEECCTHHHHHHHHHHHHHHCSSCCCCEEESSCCHH
T ss_pred HHHHHHHcCCEEEEEEeecCC--CCcchHHHHHHHHHHCCCCEEEEecccccHHHHHHHHHHcCCCcCCceEEecccchH
Confidence 999999999998876556542 237889999999988899999998888899999999999998654444555443222
Q ss_pred cccCCCCChhhhhccccEEEEEEecC--CChhhHHHHHHHhhhcCCCCCCCchhHHHhHHHHHHHHHHHHHHhcCCccee
Q 002364 264 MLDSASLPSETLESMQGVLVLRQHIP--ESDRKKNFLSRWKNLTGGSLGMNSYGLYAYDSVWLLAHAIESFFNQGGKISF 341 (930)
Q Consensus 264 ~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~f~~~~~~~~~~~~~~~~~~~~~YDav~~la~Al~~~~~~~~~~~~ 341 (930)
.+.. ...+..+|+++..++.+ +++..++|.++|+++|+....++.++..+|||++++++|++++...
T Consensus 238 ~~~~-----~~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~g~~~~~~~~~~~~yda~~~~~~Al~~ag~~------ 306 (385)
T 1pea_A 238 EVAK-----MESDVAEGQVVVAPYFSSIDTPASRAFVQACHGFFPENATITAWAEAAYWQTLLLGRAAQAAGNW------ 306 (385)
T ss_dssp HHTT-----SCHHHHTTCEEEESCCTTCSSHHHHHHHHHHHTTSCTTCCCCHHHHHHHHHHHHHHHHHHHHTSC------
T ss_pred HHHh-----cCchhhCCeEEecccccccCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHHHHhCCC------
Confidence 2111 11246788888876653 5688899999999988322357789999999999999999996311
Q ss_pred cCCccccccCCCcccCCCccccCchHHHHHHHHhCcccccccceEEccCCCcccceEEEEEe-eccceEEEEEE
Q 002364 342 SNDSRLKTMEGGNLHLGAMSIFDDGMLLLGNILQSNLVGLTGPLKFNSDRSLIHAAYDIINV-IGTGFRMIGYW 414 (930)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~f~G~~G~v~fd~~g~~~~~~~~I~~~-~~~~~~~vg~w 414 (930)
+++.|.++|++++|+|++|+++||++++.....+.|.++ ++++++.|...
T Consensus 307 -----------------------~~~~l~~al~~~~~~g~~G~i~f~~~~~~~~~~~~i~~~~~~g~~~~v~~~ 357 (385)
T 1pea_A 307 -----------------------RVEDVQRHLYDIDIDAPQGPVRVERQNNHSRLSSRIAEIDARGVFQVRWQS 357 (385)
T ss_dssp -----------------------CHHHHHHHHTTCCEEETTEEEEECTTTSCEEBCCEEEEECTTSCEEEEEEC
T ss_pred -----------------------CHHHHHHHHhhCcccCCCCCeEEcCCCCccccceEEEEEcCCCcEEEeecC
Confidence 389999999999999999999999965546677889999 68888888654
No 35
>3snr_A Extracellular ligand-binding receptor; structural genomics, APC102214, PSI-biology, midwest center structural genomics, MCSG; HET: MSE TYR PHE; 1.49A {Rhodopseudomonas palustris} PDB: 3uk0_A* 3t23_A* 3ukj_A* 4eyo_A* 4eyq_A* 3tx6_A* 4f8j_A* 4fb4_A*
Probab=100.00 E-value=8.9e-34 Score=315.09 Aligned_cols=341 Identities=16% Similarity=0.157 Sum_probs=285.0
Q ss_pred CCceEEEEEEeeCCCc---chhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCChHHHHHHHHHHHhc-CcEEEEcC
Q 002364 28 RPAVVNVGALFTLDST---IGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMET-DIVAIIGP 103 (930)
Q Consensus 28 ~~~~i~IG~i~~~s~~---~g~~~~~a~~~Av~~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~-~v~aiiGp 103 (930)
..++|+||+++|++.. .|.....|+++|++++| |+++++++.|+++++..+.+.+.+|+++ +|.+||||
T Consensus 4 a~~~i~IG~~~p~sg~~~~~g~~~~~g~~~a~~~i~-------g~~i~l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig~ 76 (362)
T 3snr_A 4 ETNEITVGISVTTTGPAAALGIPERNALEFVVKEIS-------GHPIKIIVLDDGGDPTAATTNARRFVTESKADVIMGS 76 (362)
T ss_dssp CCCCEEEEEEECCSSTTHHHHHHHHHGGGGSCSEET-------TEEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEEEC
T ss_pred CCCCeEEEEEecccCchhhcCHHHHHHHHHHHHHhC-------CeEEEEEEecCCCCHHHHHHHHHHHHhccCceEEEcC
Confidence 4568999999999843 46788899999999983 7899999999999999999999999998 89999999
Q ss_pred CChhHHHHHHHhhccCCCcEEecccCCCCCCCCCCCceEeecCCchHHHHHHHHHHHhcCccEEEEEEEcCccccchHHH
Q 002364 104 QCSTVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSA 183 (930)
Q Consensus 104 ~~s~~~~~v~~~~~~~~iP~is~~a~~~~l~~~~~p~~~r~~p~~~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~ 183 (930)
.++..+.++.+++.+.++|+|++.++ + +....+|++||+.|++..++..+++++.++||+++++|+.++.||+...+.
T Consensus 77 ~~s~~~~~~~~~~~~~~ip~v~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~~~~~~~~~~ 154 (362)
T 3snr_A 77 SVTPPSVAISNVANEAQIPHIALAPL-P-ITPERAKWSVVMPQPIPIMGKVLYEHMKKNNVKTVGYIGYSDSYGDLWFND 154 (362)
T ss_dssp SSHHHHHHHHHHHHHHTCCEEESSCC-C-CCTTTTTTEEECSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCccEEEecCC-c-cccCCCCcEEecCCChHHHHHHHHHHHHhcCCCEEEEEecCchHHHHHHHH
Confidence 99999999999999999999998776 4 334568999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcceEEEEEEecCCCCCCChhHHHHHHHHHHhCCceEEEEEcChhhHHHHHHHHHHcCcccCCeEEEEeCcchh
Q 002364 184 LNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATDWLAY 263 (930)
Q Consensus 184 l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~~~~ 263 (930)
+++++++.|+++.....++.+ ..++...+.++++.++++|++++....+..++++++++|+..+ ++...++..
T Consensus 155 ~~~~l~~~g~~v~~~~~~~~~----~~~~~~~~~~l~~~~~dav~~~~~~~~a~~~~~~~~~~g~~~p---~i~~~g~~~ 227 (362)
T 3snr_A 155 LKKQGEAMGLKIVGEERFARP----DTSVAGQALKLVAANPDAILVGASGTAAALPQTTLRERGYNGL---IYQTHGAAS 227 (362)
T ss_dssp HHHHHHHTTCEEEEEEEECTT----CSCCHHHHHHHHHHCCSEEEEECCHHHHHHHHHHHHHTTCCSE---EEECGGGCS
T ss_pred HHHHHHHcCCEEEEEeecCCC----CCCHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHHHcCCCcc---EEeccCcCc
Confidence 999999999999887777765 6678888999998899999999989999999999999998654 465554433
Q ss_pred cccCCCCChhhhhccccEEEEEEe----------cCCChhhHHHHHHHhhhcCCCCCCCchhHHHhHHHHHHHHHHHHHH
Q 002364 264 MLDSASLPSETLESMQGVLVLRQH----------IPESDRKKNFLSRWKNLTGGSLGMNSYGLYAYDSVWLLAHAIESFF 333 (930)
Q Consensus 264 ~~~~~~~~~~~~~~~~g~~~~~~~----------~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~YDav~~la~Al~~~~ 333 (930)
.... ....+..+|++....+ .|.++..++|.++|+++| +...++.++..+|||++++++|++++.
T Consensus 228 ~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~-~~~~p~~~~~~~yda~~~~~~al~~a~ 302 (362)
T 3snr_A 228 MDFI----RIAGKSAEGVLMASGPVMDPEGQDDTALTKKPGMALVKVYEEKY-GPSSRSQFAGHSYDAFKVLERVVPVAL 302 (362)
T ss_dssp HHHH----HHHGGGGTTCEEEECGGGCSTTSCTTCTTHHHHHHHHHHHHHHH-CTTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH----HHhHHHhCCCEEecccccccccCCCcCcccHHHHHHHHHHHHHh-CCCCCCchhHhHHHHHHHHHHHHHHhh
Confidence 2111 2334568888877642 122356899999999998 333678999999999999999999986
Q ss_pred hcCCcceecCCccccccCCCcccCCCccccCchHHHHHHHHhC-cccccccceEEccCCCc--ccceEEEEEeeccceEE
Q 002364 334 NQGGKISFSNDSRLKTMEGGNLHLGAMSIFDDGMLLLGNILQS-NLVGLTGPLKFNSDRSL--IHAAYDIINVIGTGFRM 410 (930)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~-~f~G~~G~v~fd~~g~~--~~~~~~I~~~~~~~~~~ 410 (930)
+.... +.+.+++.|.++|+++ +|+|++|+++|+++++. .+..+.|+++++++++.
T Consensus 303 ~~~~~----------------------g~~~~~~~~~~al~~~~~~~g~~G~~~f~~~~~~g~~~~~~~i~~~~~G~~~~ 360 (362)
T 3snr_A 303 KKAKP----------------------GTQEFREALREAFLTEKDIAASQGVYNFTETDRYGLDDRSRILLTVKNGKYVI 360 (362)
T ss_dssp HHCCT----------------------TSHHHHHHHHHHHHHCCCEECSSCEECCCSSCSSCCCGGGCEEEEEETTEEEE
T ss_pred ccccC----------------------CCcchHHHHHHHHHhcCCcccceeeEEeCCCCCCCCCCCCeEEEEEECCEEEE
Confidence 54210 0122489999999999 89999999999987543 35678999999998876
Q ss_pred E
Q 002364 411 I 411 (930)
Q Consensus 411 v 411 (930)
|
T Consensus 361 v 361 (362)
T 3snr_A 361 V 361 (362)
T ss_dssp C
T ss_pred c
Confidence 5
No 36
>2h4a_A YRAM (HI1655); perplasmic binding protein, lipoprotein; 1.35A {Haemophilus influenzae} PDB: 3ckm_A
Probab=99.96 E-value=1.4e-27 Score=256.87 Aligned_cols=307 Identities=11% Similarity=0.079 Sum_probs=245.8
Q ss_pred EEEEEeeCCC---cchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCChhHH
Q 002364 33 NVGALFTLDS---TIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCSTVA 109 (930)
Q Consensus 33 ~IG~i~~~s~---~~g~~~~~a~~~Av~~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~s~~~ 109 (930)
+||+++|+|. .+|...+.|+++|. .|++++++++|+++++ +...+.++++++|.+||||.+|..+
T Consensus 2 kIG~llplSG~~a~~G~~~~~G~~lA~----------~G~~i~l~~~D~~~~~--a~~~~~~l~~~~v~~IiGp~~s~~~ 69 (325)
T 2h4a_A 2 QIGLLLPLSGDGQILGTTIQSGFNDAK----------GNSTIPVQVFDTSMNS--VQDIIAQAKQAGIKTLVGPLLKQNL 69 (325)
T ss_dssp CEEEEECCSSTTHHHHHHHHHHHHHHH----------TTCCSCEEEEETTTSC--HHHHHHHHHHTTCCEEECCCSHHHH
T ss_pred cEEEEECCCCccHHHHHHHHHHHHHhc----------cCCCceEEEEECCCCh--HHHHHHHHHHCCCCEEEeeCCHHHH
Confidence 6999999994 45899999999986 2789999999999987 5677888888899999999999999
Q ss_pred HHHHHhh-ccCCCcEEecccCCCCCCCCCCCceEeecCCchHHHHHHHHHHHhcCccEEEEEEEcCccccchHHHHHHHH
Q 002364 110 HIVSYVS-NELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKL 188 (930)
Q Consensus 110 ~~v~~~~-~~~~iP~is~~a~~~~l~~~~~p~~~r~~p~~~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l 188 (930)
.++++++ ...++|+|++++++. .....+.|+||+.| ..++.++++++...|.+++++++.+++||+...+.|++++
T Consensus 70 ~a~~~~~~~~~~vp~i~~~~~~~-~~~~~~~~~f~~~~--~~~~~~~a~~a~~~g~k~vail~~~~~yG~~~~~~F~~~~ 146 (325)
T 2h4a_A 70 DVILADPAQIQGMDVLALNATPN-SRAIPQLCYYGLSP--EDEAESAANKMWNDGVRNPLVAMPQNDLGQRVGNAFNVRW 146 (325)
T ss_dssp HHHHHCGGGGTTCEEEESCCCSS-CCCCTTEEECCCCH--HHHHHHHHHHHHHTTCCSCEEEEESSHHHHHHHHHHHHHH
T ss_pred HHHHhhhhccCCCcEEECCCCcc-ccCCCCeEEEECCH--HHHHHHHHHHHHHcCCCeEEEEEcCCcHHHHHHHHHHHHH
Confidence 9999999 789999999876542 32233456677554 4579999999988899999999999999999999999999
Q ss_pred hhcceEEEEEEecCCCCCCChhHHHHHHHHHHhCCceEEEEEcChhhHHHHHHHHHHcCcccCCeEEEEeCcch--hccc
Q 002364 189 AERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATDWLA--YMLD 266 (930)
Q Consensus 189 ~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~~~--~~~~ 266 (930)
++.|++|+..+.++.+ +|+..+|+++ ..++|+|++.+.+.++..+.++++..|. .-..+.++++. +...
T Consensus 147 ~~~Gg~vv~~~~y~~~-----~d~~~~l~~i-~~~pDaV~~~~~~~~~~~i~~~~~~~g~---~~pl~~~~~~~~~s~~~ 217 (325)
T 2h4a_A 147 QQLAGTDANIRYYNLP-----ADVTYFVQEN-NSNTTALYAVASPTELAEXKGYLTNIVP---NLAIYASSRASASATNT 217 (325)
T ss_dssp HHHHSSCCEEEEESST-----THHHHHHHHS-TTCCCEEEECCCHHHHHHHHHHHTTTCT---TCEEEECGGGCCHHHHT
T ss_pred HHcCCCcceeEecCCH-----HHHHHHHHhc-CCCCCEEEEeCCHHHHhhhhhhHhhcCC---CCCEEEeccccccCCCC
Confidence 9999999988888743 5999999998 4789999999999999888888887654 33467777665 3211
Q ss_pred CCCCChhhhhccccEEEEE-Eec--CCChhhHHHHHHHhhhcCCCCCCCchhHHHhHHHHHHHHHHHHHHhcCCcceecC
Q 002364 267 SASLPSETLESMQGVLVLR-QHI--PESDRKKNFLSRWKNLTGGSLGMNSYGLYAYDSVWLLAHAIESFFNQGGKISFSN 343 (930)
Q Consensus 267 ~~~~~~~~~~~~~g~~~~~-~~~--~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~YDav~~la~Al~~~~~~~~~~~~~~ 343 (930)
.......++|++... |+. ++.+..++|.++|+..+ .+....+.+|||+.+++++ .++
T Consensus 218 ----~~~~~~~~~Gv~f~~~p~~~~~~~~~~~~f~~~~~~~~----~~~rl~AlgyDA~~l~~~l-~~l----------- 277 (325)
T 2h4a_A 218 ----NTDFIAQMNGVQFSDIPFFKDTNSPQYQKLAKSTGGEY----QLMRLYAMGADAWLLINQF-NEL----------- 277 (325)
T ss_dssp ----CHHHHHHTTTCEEEECGGGSCCCSHHHHHHHHHTTTCH----HHHHHHHHHHHHHHHHHTH-HHH-----------
T ss_pred ----CchhhhhcCCcEEEccccccCCCcHHHHHHHhccCCCc----chHHHHHHHHHHHHHHHHH-HHH-----------
Confidence 134456789987665 454 35567888888876544 2455678999999986553 321
Q ss_pred CccccccCCCcccCCCccccCchHHHHHHHHhCcccccccceEEccCCCcccceEEEEEeeccceEEE
Q 002364 344 DSRLKTMEGGNLHLGAMSIFDDGMLLLGNILQSNLVGLTGPLKFNSDRSLIHAAYDIINVIGTGFRMI 411 (930)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~f~G~~G~v~fd~~g~~~~~~~~I~~~~~~~~~~v 411 (930)
+.+.+..|+|++|.++||++|+ ....+.+.+++++++++|
T Consensus 278 ---------------------------~~~~~~~~~G~tG~l~~~~~g~-~~R~l~~~~~~~G~~~~~ 317 (325)
T 2h4a_A 278 ---------------------------RQVPGYRLSGLTGILSADTNCN-VERDMTWYQYQDGAIVPV 317 (325)
T ss_dssp ---------------------------HHSTTCCEEETTEEEEECTTCB-EEEECEEEEEETTEEEEC
T ss_pred ---------------------------hhCCCCeeccCceeEEECCCCe-EEEeechhhccCCeEEEe
Confidence 1234467999999999999998 688899999999988776
No 37
>3ckm_A YRAM (HI1655), LPOA; periplasmic-binding protein, lipoprotein, unliganded, biosynthetic protein; 1.35A {Haemophilus influenzae} SCOP: c.93.1.1
Probab=99.95 E-value=1.6e-27 Score=259.74 Aligned_cols=311 Identities=12% Similarity=0.078 Sum_probs=241.0
Q ss_pred EEEEEEeeCCC---cchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCChhH
Q 002364 32 VNVGALFTLDS---TIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCSTV 108 (930)
Q Consensus 32 i~IG~i~~~s~---~~g~~~~~a~~~Av~~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~s~~ 108 (930)
++||+++|+|. .+|...+.|+++|++ |++++++++|++++|..++ +..+.+++|.+||||.+|+.
T Consensus 3 ~kIG~l~PlSG~~a~~G~~~~~g~~lA~~----------g~~i~l~~~D~~~~~~~aa--~~~~~~~~v~~iiGp~~s~~ 70 (327)
T 3ckm_A 3 SQIGLLLPLSGDGQILGTTIQSGFNDAKG----------NSTIPVQVFDTSMNSVQDI--IAQAKQAGIKTLVGPLLKQN 70 (327)
T ss_dssp CCEEEEECCSSTTHHHHHHHHHHHHHHHT----------TCCSCEEEEETTTSCHHHH--HHHHHHTTCCEEECCCSHHH
T ss_pred EEEEEEECCCCchHHHHHHHHHHHHHhCC----------CCCceEEEEeCCCCHHHHH--HHHHHHcCCeEEEEcccccc
Confidence 68999999984 458889999999862 5778999999999987663 44566669999999999998
Q ss_pred HHHHHHhh-ccCCCcEEecccCCCCCCCCCCCceEeecCCchHHHHHHHHHHHhcCccEEEEEEEcCccccchHHHHHHH
Q 002364 109 AHIVSYVS-NELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDK 187 (930)
Q Consensus 109 ~~~v~~~~-~~~~iP~is~~a~~~~l~~~~~p~~~r~~p~~~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~ 187 (930)
+.+++... +...+|+++.++++.. ...|++||+.+++..++.++++++...+++++++++.|++||+...+.+++.
T Consensus 71 ~~a~~~~~~~~~~v~~~~~~~~~~~---~~~~~~f~~~~~~~~~~~~~a~~~~~~g~k~~~ii~~~~~yg~~~~~~f~~~ 147 (327)
T 3ckm_A 71 LDVILADPAQIQGMDVLALNATPNS---RAIPQLCYYGLSPEDEAESAANKMWNDGVRNPLVAMPQNDLGQRVGNAFNVR 147 (327)
T ss_dssp HHHHHHCGGGGTTCEEEESCCCTTC---CCCTTEEECCCCHHHHHHHHHHHHHHTTCCSCEEEEESSHHHHHHHHHHHHH
T ss_pred chhhHHHHHhccCceEeccCcCccc---ccCCCeEEEecChHHHHHHHHHHHHhcCCeeEEEEecCChHHHHHHHHHHHH
Confidence 88877655 4556677664443332 2358899999999999999999999999999999999999999999999999
Q ss_pred HhhcceEEEEEEecCCCCCCChhHHHHHHHHHHhCCceEEEEEcChhhHHHHHHHHHHcCcccCCeEEEEeCcchhcccC
Q 002364 188 LAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATDWLAYMLDS 267 (930)
Q Consensus 188 l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~~~~~~~~ 267 (930)
+++.|++|+..+.++.. +. ...+.+++..++|+|++...+.++..+++++++.|+.. .++.++++......
T Consensus 148 ~~~~Gg~vv~~~~~~~~----~~--~~~~~~~~~~~~dai~~~~~~~~~~~i~~q~~~~g~~~---~~~~~~~~~~~~~~ 218 (327)
T 3ckm_A 148 WQQLAGTDANIRYYNLP----AD--VTYFVQENNSNTTALYAVASPTELAEMKGYLTNIVPNL---AIYASSRASASATN 218 (327)
T ss_dssp HHHHHSSCCEEEEESST----TH--HHHHHHHSCTTCCEEEECCCHHHHHHHHHHHTTTCTTC---EEEECGGGCCHHHH
T ss_pred HHHCCCeEEEEEECCCC----ch--hhHHHHHhccCCcEEEEEcCHHHHHHHHHHHHhhhccC---CEEeeeccccccch
Confidence 99999999988888754 33 34567788899999999999999999999999988644 46666554332111
Q ss_pred CCCChhhhhccccEEEEEE-e--cCCChhhHHHHHHHhhhcCCCCCCCchhHHHhHHHHHHHHHHHHHHhcCCcceecCC
Q 002364 268 ASLPSETLESMQGVLVLRQ-H--IPESDRKKNFLSRWKNLTGGSLGMNSYGLYAYDSVWLLAHAIESFFNQGGKISFSND 344 (930)
Q Consensus 268 ~~~~~~~~~~~~g~~~~~~-~--~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~YDav~~la~Al~~~~~~~~~~~~~~~ 344 (930)
........+.|+..... + .++.+..+.|.++|+..+ .+..+.+++|||+.+++++.+.
T Consensus 219 --~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~----~~~~~~AlgyDA~~l~~~l~~~------------- 279 (327)
T 3ckm_A 219 --TNTDFIAQMNGVQFSDIPFFKDTNSPQYQKLAKSTGGEY----QLMRLYAMGADAWLLINQFNEL------------- 279 (327)
T ss_dssp --TCHHHHHHTTTCEEEECGGGGCCCSHHHHHHHHHTTTCH----HHHHHHHHHHHHHHHHHTHHHH-------------
T ss_pred --hcchhhhhcCCeEEEcccccCCCCCHHHHHHHHHHHhhc----CCCchHHHHHHHHHHHHHHHHh-------------
Confidence 01222334667665543 3 345678889999888766 2234677899999887655433
Q ss_pred ccccccCCCcccCCCccccCchHHHHHHHHhCcccccccceEEccCCCcccceEEEEEeeccceEEEE
Q 002364 345 SRLKTMEGGNLHLGAMSIFDDGMLLLGNILQSNLVGLTGPLKFNSDRSLIHAAYDIINVIGTGFRMIG 412 (930)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~f~G~~G~v~fd~~g~~~~~~~~I~~~~~~~~~~vg 412 (930)
+.+....|+|++|.++||+||+ ....+.+.++++|++++|.
T Consensus 280 --------------------------~~~~~~~f~G~tG~i~fd~~G~-~~r~l~~~~~~~G~~vpv~ 320 (327)
T 3ckm_A 280 --------------------------RQVPGYRLSGLTGILSADTNCN-VERDMTWYQYQDGAIVPVV 320 (327)
T ss_dssp --------------------------HHSTTCCEEETTEEEEECTTCB-EEEECEEEEEETTEEEECC
T ss_pred --------------------------cCCCCCCceeceEEEEECCCCC-CccccEEEEEECCEEEEcc
Confidence 1233456999999999999997 6788899999999999986
No 38
>1yae_A Glutamate receptor, ionotropic kainate 2; kainate receptor, membrane protein; HET: NAG FUC DOQ; 3.11A {Rattus norvegicus} SCOP: c.94.1.1
Probab=99.94 E-value=1.3e-26 Score=251.15 Aligned_cols=270 Identities=23% Similarity=0.419 Sum_probs=195.0
Q ss_pred CCCceeEEEecCCccccceeeecc------CCcceEeeeHHHHHHHHHhCCCcccEEEEec---CCCCC-CCCHHHHHHH
Q 002364 462 NNGKLLKIGVPNRASYREFVSKVR------GSDMFQGFCIDVFTAAVNLLPYAVPYQFVAF---GDGHK-NPSYTQLVDS 531 (930)
Q Consensus 462 ~~g~~lrv~~~~~~~~~p~~~~~~------~~~~~~G~~~dl~~~l~~~l~f~~~~~~~~~---~~~~~-~~~~~~~~~~ 531 (930)
.++++|||++.. ++||.+.+. +++++.|+++||++++++++|+++++..++. |.... +.+|++++.+
T Consensus 10 ~~~~~l~V~~~~---~~P~~~~~~~~~~~~~~g~~~G~~vdl~~~ia~~lg~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 86 (312)
T 1yae_A 10 LSNRSLIVTTIL---EEPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDVNGQWNGMVRE 86 (312)
T ss_dssp TCSCEEEEEECC---BTTTBEECCCSSCCCGGGGEESHHHHHHHHHHHHHCCEEEEEECSSCCCCCBCTTTCCBCSHHHH
T ss_pred hcCceEEEEEec---cCCeeEEeccccccCCCceEEEEEHHHHHHHHHHcCCeEEEEecCCCccceeccCCCcchHHHHH
Confidence 356889999995 378877651 3788999999999999999998866665542 22222 5789999999
Q ss_pred HHcCcccEEEeeeeeecCceeeeeecccccccceEEEEeccC-CCCCcceeeccCchhHHHHHHHHHHHHHHHhhhhhcc
Q 002364 532 ITTGVFDAVVGDITIVTNRTKIVDFSQPYAASGLVVVVPFRK-LNTGAWAFLRPFSPLMWTVTACFFVVVGIVVWILEHR 610 (930)
Q Consensus 532 l~~g~~D~~~~~~~~t~~r~~~vdft~p~~~~~~~~lv~~~~-~~~~~~~~l~PF~~~vW~~~~~~~~~~~~~~~~~~~~ 610 (930)
|.+|++|++++++++|++|.+.++||.||+..+.+++++++. ...++|.|+.||+.
T Consensus 87 l~~g~~D~~~~~~~~t~eR~~~~~fs~py~~~~~~~~~~~~~~~~~~~~~~~~pf~~----------------------- 143 (312)
T 1yae_A 87 LIDHKADLAVAPLAITYVREKVIDFSKPFMTLGISILYRKPNGTNPGVFSFLNGGSL----------------------- 143 (312)
T ss_dssp HHTTSCSEECSSCBCCHHHHHHEEEEEEEEEECEEEEEEC----------------------------------------
T ss_pred HhCCCcCEEeecceechhhcceEEecceeeecceEEEEeCCccccccceeeeccccc-----------------------
Confidence 999999999988999999999999999999999999999876 56789999999981
Q ss_pred cCCCCCCCccccchhhhHHHHHHhhhcCcCcccccchhhhHHHHHHHHHhhhhhhhhhhheeeecccccCCCCChHHhhh
Q 002364 611 INDEFRGPPKRQVITILWFSLSTLFFAHKENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLYSPINGIESLRK 690 (930)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~s~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~ 690 (930)
.|+ |++++...|++++||.
T Consensus 144 ------------------------------~p~------------------------------tv~~~~~~i~~~~dL~- 162 (312)
T 1yae_A 144 ------------------------------VPR------------------------------GSERMESPIDSADDLA- 162 (312)
T ss_dssp -----------------------------------------------------------------------CCSHHHHH-
T ss_pred ------------------------------CCc------------------------------ccccccCCCCCHHHHh-
Confidence 011 4566668899999998
Q ss_pred CCC---CeEEEeCchHHHHHHHhhccc-----------cccceecCCHHHHHHHHhcCCCCCceEEEEecchhHHHHHhc
Q 002364 691 SDD---PIGYQEGSFAEYYLSQELNIS-----------KSRLVALRTPEDYAKALKDGPGKGGVAAVVDERPYVELFLSS 756 (930)
Q Consensus 691 ~~~---~v~~~~~s~~~~~l~~~~~~~-----------~~~~~~~~~~~~~~~~l~~~~~~g~~~a~i~~~~~~~~~~~~ 756 (930)
++ ++|+..++....++.+. ..+ ..++..+.+.++++++|.+ |+ ||++.+...+.|++.+
T Consensus 163 -g~~~~~vg~v~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----G~-Da~i~~~~~~~~~~~~ 235 (312)
T 1yae_A 163 -KQTKIEYGAVEDGATMTFFKKS-KISTYDKMWAFMSSRRQSVLVKSNEEGIQRVLT----SD-YAFLMESTTIEFVTQR 235 (312)
T ss_dssp -TCSSSEEECBTTSHHHHHHHHC-CBHHHHHHHHHHHHTHHHHCBSSHHHHHHHHHH----SS-EEEEEEHHHHHHHHTT
T ss_pred -hccCceEEEEeCChHHHHHHhc-cCchHHHHHHHHHhcCCCcccCCHHHHHHHHHc----CC-cEEEeccHHHHHHHhc
Confidence 54 68876665566666432 111 1245668899999999999 89 9999999999999988
Q ss_pred CccEEEeCccccccceeeeeCCCCcchHHHHHHHHhhhhccchHHHHHHhcccCCCCCcccccccccccc
Q 002364 757 QCSFRIVGQEFTKSGWGFAFPRDSPLAVDLSSAILELAENGDLQRIHDKWLMKSSCSLENAELESDRLHL 826 (930)
Q Consensus 757 ~~~l~~~~~~~~~~~~~~~~~k~spl~~~i~~~i~~l~e~G~~~~~~~~w~~~~~c~~~~~~~~~~~l~l 826 (930)
.|++.++++.+...+++++++|++||++.||++|.+|.++|.+++|.+||+....|...... +...+++
T Consensus 236 ~~~l~~~~~~~~~~~~~~a~~k~~~l~~~in~~l~~l~~~G~~~~i~~kw~~~~~c~~~~~~-~~~~~~~ 304 (312)
T 1yae_A 236 NCNLTQIGGLIDSKGYGVGTPMGSPYRDKITIAILQLQEEGKLHMMKEKWWRGNGCPEEESK-EASALGV 304 (312)
T ss_dssp CTTEEEESSCSSCEEEEEEEETTCSSHHHHHHHHHHHHHHTHHHHHHHHHHCCSCC--------------
T ss_pred CCCEEEecccccccceEEEEeCCCCcHHHHHHHHHHHHHcCCHHHHHhhhcCCCCCCCCCCc-cchhhhh
Confidence 89999998888888899999999999999999999999999999999999998899876544 3444444
No 39
>3g3k_A Glutamate receptor, ionotropic kainate 2; membrane protein, cell junction, cell membrane, glycoprotein, ION transport, ionic channel, membrane; HET: GLU IPA; 1.24A {Rattus norvegicus} PDB: 3g3j_A* 3g3i_A* 2i0b_A* 3g3h_A* 3g3g_A* 3g3f_A* 1s7y_A* 1s9t_A* 1sd3_A* 1tt1_A* 1s50_A* 2xxr_A* 2xxt_A* 2xxx_A* 2xxw_A* 2xxy_A* 2xxu_A* 2xxv_A* 3qxm_A* 2i0c_A* ...
Probab=99.92 E-value=1.2e-24 Score=229.13 Aligned_cols=233 Identities=22% Similarity=0.433 Sum_probs=194.8
Q ss_pred CCceeEEEecCCccccceeeeccC------CcceEeeeHHHHHHHHHhCCCcccEEEEecCC-CC---CCCCHHHHHHHH
Q 002364 463 NGKLLKIGVPNRASYREFVSKVRG------SDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGD-GH---KNPSYTQLVDSI 532 (930)
Q Consensus 463 ~g~~lrv~~~~~~~~~p~~~~~~~------~~~~~G~~~dl~~~l~~~l~f~~~~~~~~~~~-~~---~~~~~~~~~~~l 532 (930)
++++|||++.. ++||.+.+.. ++++.|+++||++++++++|+++++..++.+. |. .+.+|++++.+|
T Consensus 2 ~~~~l~v~~~~---~~P~~~~~~~~~~~~~~g~~~G~~vdl~~~ia~~lg~~~~~~~~p~~~~g~~~~~~~~~~~~~~~l 78 (259)
T 3g3k_A 2 SNRSLIVTTIL---EEPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTHLGFTYEIRLVEDGKYGAQDDVNGQWNGMVREL 78 (259)
T ss_dssp -CCCEEEEECC---BTTTBEECCCSSCCCGGGGEESHHHHHHHHHHHHHTCCEEEEECTTCCCCCBCTTTCCBCHHHHHH
T ss_pred CCcEEEEEEec---CCCeEEEeecccccCCCceeeeEHHHHHHHHHHHcCCeEEEEECCCCCcCcccCCCCcchHHHHHH
Confidence 36789999995 4688877643 48999999999999999999887777665321 21 146899999999
Q ss_pred HcCcccEEEeeeeeecCceeeeeecccccccceEEEEeccCCCCCcceeeccCchhHHHHHHHHHHHHHHHhhhhhcccC
Q 002364 533 TTGVFDAVVGDITIVTNRTKIVDFSQPYAASGLVVVVPFRKLNTGAWAFLRPFSPLMWTVTACFFVVVGIVVWILEHRIN 612 (930)
Q Consensus 533 ~~g~~D~~~~~~~~t~~r~~~vdft~p~~~~~~~~lv~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~~~~~~~~~~~ 612 (930)
.+|++|++++++++|++|.+.++||.||+..+.++++++..
T Consensus 79 ~~g~~D~~~~~~~~t~eR~~~~~fs~py~~~~~~~~~~~~~--------------------------------------- 119 (259)
T 3g3k_A 79 IDHKADLAVAPLAITYVREEVIDFSKPFMTLGISILYRKGT--------------------------------------- 119 (259)
T ss_dssp HTTSCSEECSSCBCCHHHHTTEEECSCSEEECEEEEEESSS---------------------------------------
T ss_pred hcCcccEEEeeeEecccccceEeeeeeeeeCCEEEEEeCCc---------------------------------------
Confidence 99999999999999999999999999999999999998765
Q ss_pred CCCCCCccccchhhhHHHHHHhhhcCcCcccccchhhhHHHHHHHHHhhhhhhhhhhheeeecccccCCCCChHHhhhCC
Q 002364 613 DEFRGPPKRQVITILWFSLSTLFFAHKENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLYSPINGIESLRKSD 692 (930)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~s~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~ 692 (930)
+|++++||. +
T Consensus 120 --------------------------------------------------------------------~i~~~~dL~--g 129 (259)
T 3g3k_A 120 --------------------------------------------------------------------PIDSADDLA--K 129 (259)
T ss_dssp --------------------------------------------------------------------SCCSHHHHH--T
T ss_pred --------------------------------------------------------------------cccCHHHhc--c
Confidence 588999998 5
Q ss_pred CC---eEEEeCchHHHHHHHhhccc-----------cccceecCCHHHHHHHHhcCCCCCceEEEEecchhHHHHHhcCc
Q 002364 693 DP---IGYQEGSFAEYYLSQELNIS-----------KSRLVALRTPEDYAKALKDGPGKGGVAAVVDERPYVELFLSSQC 758 (930)
Q Consensus 693 ~~---v~~~~~s~~~~~l~~~~~~~-----------~~~~~~~~~~~~~~~~l~~~~~~g~~~a~i~~~~~~~~~~~~~~ 758 (930)
++ +|+..++....++.+. +.. ...++.+.+.++++++|.+ |+ |+++.+...+.|+..+.|
T Consensus 130 ~~~~~ig~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----g~-da~i~~~~~~~~~~~~~~ 203 (259)
T 3g3k_A 130 QTKIEYGAVEDGATMTFFKRS-KISTYDKMWAFMSSRRQSVLVKSNEEGIQRVLT----SD-YAFLMESTTIEFVTQRNC 203 (259)
T ss_dssp CSSSEEEEETTSHHHHHHHHC-CSHHHHHHHHHHHHTHHHHEESSHHHHHHHHHH----SS-EEEEEEHHHHHHHHHHCT
T ss_pred CCCceEEEecCcHHHHHHhhc-cchhHHHHHHHHHhcCCCcccCCHHHHHHHHHh----CC-eEEEechHHHHHHhcCCc
Confidence 54 8888877777776432 111 1134567899999999999 88 999999999999998889
Q ss_pred cEEEeCccccccceeeeeCCCCcchHHHHHHHHhhhhccchHHHHHHhcccCCCC
Q 002364 759 SFRIVGQEFTKSGWGFAFPRDSPLAVDLSSAILELAENGDLQRIHDKWLMKSSCS 813 (930)
Q Consensus 759 ~l~~~~~~~~~~~~~~~~~k~spl~~~i~~~i~~l~e~G~~~~~~~~w~~~~~c~ 813 (930)
++.+++..+...+++++++|++||+..||++|.+|.++|.+++|.+||+....|+
T Consensus 204 ~l~~~~~~~~~~~~~~a~~k~~~l~~~in~~l~~l~~~G~~~~i~~kw~~~~~c~ 258 (259)
T 3g3k_A 204 NLTQIGGLIDSKGYGVGTPMGSPYRDKITLAILKLQEQGKLHMMKEKWWRGNGCP 258 (259)
T ss_dssp TEEEESSCSSCEEECCEEETTCTHHHHHHHHHHHHHHTC-CHHHHHHHHCC--CC
T ss_pred eEEEecccceeeeEEEEECCCCccHHHHHHHHHHHHhcChHHHHHHhhcCCCCCC
Confidence 9999999888889999999999999999999999999999999999999977786
No 40
>1pb7_A N-methyl-D-aspartate receptor subunit 1; ligand binding receptor, NR1, ligand binding protein; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1pbq_A* 1y1m_A 1y1z_A 1y20_A 2a5t_A* 1pb8_A 1pb9_A
Probab=99.91 E-value=1e-24 Score=233.35 Aligned_cols=236 Identities=22% Similarity=0.423 Sum_probs=189.5
Q ss_pred ceeEEEecCCccccceeeeccCCcceEeeeHHHHHHHHHhCCCcccEEEEecCC-CC-------CCCCHHHHHHHHHcCc
Q 002364 465 KLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGD-GH-------KNPSYTQLVDSITTGV 536 (930)
Q Consensus 465 ~~lrv~~~~~~~~~p~~~~~~~~~~~~G~~~dl~~~l~~~l~f~~~~~~~~~~~-~~-------~~~~~~~~~~~l~~g~ 536 (930)
+.|+|++.. .|+||.+.+. ++++.|+++||++++++++|+++++..++.+. |. .+++|++++.+|.+|+
T Consensus 41 ~~l~vg~~~--~~~P~~~~~~-~g~~~G~~vDll~~ia~~lg~~~~~~~~~d~~~g~~~~~~~~~~~~w~~~~~~l~~g~ 117 (292)
T 1pb7_A 41 KVICTGPND--TSPGSPRHTV-PQCCYGFCIDLLIKLARTMNFTYEVHLVADGKFGTQERVNNSNKKEWNGMMGELLSGQ 117 (292)
T ss_dssp CEEEEEEC----------CEE-EEEEESHHHHHHHHHHHHHTCCEEEEECTTCCCCCEEECTTSSCEEECHHHHHHHHTS
T ss_pred ceeecccCC--CCCCcccccc-ccCcceeHHHHHHHHHHHcCceEEEEEecCCcccccccccccccCcHHHHHHHHHcCC
Confidence 678888875 7888877665 78899999999999999999886666554221 11 1247999999999999
Q ss_pred ccEEEeeeeeecCceeeeeecccccccceEEEEeccCCCCCcceeeccCchhHHHHHHHHHHHHHHHhhhhhcccCCCCC
Q 002364 537 FDAVVGDITIVTNRTKIVDFSQPYAASGLVVVVPFRKLNTGAWAFLRPFSPLMWTVTACFFVVVGIVVWILEHRINDEFR 616 (930)
Q Consensus 537 ~D~~~~~~~~t~~r~~~vdft~p~~~~~~~~lv~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~~~~~~~~~~~~~~~ 616 (930)
+|+++++++++++|.+.++||.||+..+.+++++++.
T Consensus 118 ~D~~~~~~~~t~~R~~~~~fs~Py~~~~~~i~~~~~~------------------------------------------- 154 (292)
T 1pb7_A 118 ADMIVAPLTINNERAQYIEFSKPFKYQGLTILVKKGT------------------------------------------- 154 (292)
T ss_dssp CSEECSSCBCCHHHHTTEEECSCSEEEEEEEEEETTC-------------------------------------------
T ss_pred cCEEEeeeEecHHHhcceEechhhHhcCeEEEEECCc-------------------------------------------
Confidence 9999999999999999999999999999999998764
Q ss_pred CCccccchhhhHHHHHHhhhcCcCcccccchhhhHHHHHHHHHhhhhhhhhhhheeeecccccCCCCChHHhhhCCC---
Q 002364 617 GPPKRQVITILWFSLSTLFFAHKENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLYSPINGIESLRKSDD--- 693 (930)
Q Consensus 617 ~~~~~~~~~~~~~~~~~l~~~~~~~~~s~s~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~--- 693 (930)
++++++||...+.
T Consensus 155 ----------------------------------------------------------------~i~~~~dl~~~g~~~~ 170 (292)
T 1pb7_A 155 ----------------------------------------------------------------RITGINDPRLRNPSDK 170 (292)
T ss_dssp ----------------------------------------------------------------CCCSTTCHHHHSCBTT
T ss_pred ----------------------------------------------------------------CCCCCcCccccCcccc
Confidence 4556677753332
Q ss_pred C-eEEEeCchHHHHHHHhhcc----ccccceecCCHHHHHHHHhcCCCCCceEEEEecchhHHHHHhcCccEEEeCcccc
Q 002364 694 P-IGYQEGSFAEYYLSQELNI----SKSRLVALRTPEDYAKALKDGPGKGGVAAVVDERPYVELFLSSQCSFRIVGQEFT 768 (930)
Q Consensus 694 ~-v~~~~~s~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~i~~~~~~~~~~~~~~~l~~~~~~~~ 768 (930)
. +++..++....++.+.... +..++..+.+.++++++|.+ |++||++.+...+.|+.++.|++.+++..+.
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----G~vDa~i~d~~~~~~~~~~~~~l~~~~~~~~ 246 (292)
T 1pb7_A 171 FIYATVKQSSVDIYFRRQVELSTMYRHMEKHNYESAAEAIQAVRD----NKLHAFIWDSAVLEFEASQKCDLVTTGELFF 246 (292)
T ss_dssp BCEECBTTSHHHHHHHTCGGGHHHHHHHTTTCBSSHHHHHHHHHT----TSCSEEEEEHHHHHHHHHHCTTEEECSSCSE
T ss_pred eEEEEEcCchHHHHhhhcccHHHHHHHHHhhcCCCHHHHHHHHHc----CCceEEEEcHHHHHHHHhcCCCEEEcCcccc
Confidence 3 5777788777777432211 12345678899999999999 8999999999999999999999999998888
Q ss_pred ccceeeeeCCCCcchHHHHHHHHhhhhccchHHHHHHhcccCCCCC
Q 002364 769 KSGWGFAFPRDSPLAVDLSSAILELAENGDLQRIHDKWLMKSSCSL 814 (930)
Q Consensus 769 ~~~~~~~~~k~spl~~~i~~~i~~l~e~G~~~~~~~~w~~~~~c~~ 814 (930)
..+++++++|++||++.||++|.+|.++|.+++|.+||+....|..
T Consensus 247 ~~~~~ia~~k~~~l~~~in~al~~l~~~G~~~~l~~kw~~~~~c~~ 292 (292)
T 1pb7_A 247 RSGFGIGMRKDSPWKQNVSLSILKSHENGFMEDLDKTWVRYQECDS 292 (292)
T ss_dssp EEEECCEEETTCSSHHHHHHHHHHHHHSSHHHHHHHHHTSSSCCCC
T ss_pred CCceEEEEeCCCHHHHHHHHHHHHHHhCCCHHHHHHhhCCCCCCCC
Confidence 8899999999999999999999999999999999999999888863
No 41
>4h5g_A Amino acid ABC superfamily ATP binding cassette transporter, binding protein; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; HET: ARG; 1.78A {Streptococcus pneumoniae} PDB: 4h5f_A*
Probab=99.91 E-value=7e-24 Score=220.66 Aligned_cols=221 Identities=21% Similarity=0.303 Sum_probs=190.3
Q ss_pred CceeEEEecCCccccceeeec--cCCcceEeeeHHHHHHHHHhCCCcccEEEEecCCCCCCCCHHHHHHHHHcCcccEEE
Q 002364 464 GKLLKIGVPNRASYREFVSKV--RGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVV 541 (930)
Q Consensus 464 g~~lrv~~~~~~~~~p~~~~~--~~~~~~~G~~~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~D~~~ 541 (930)
.++|+||+.. +|+||.+.. ++++++.|+++||++++++++|++++ +++ ..|++++.+|.+|++|+++
T Consensus 11 ~g~L~Vg~~~--~~pP~~~~~~~d~~g~~~G~~vdl~~~ia~~lg~~~~--~~~-------~~~~~~~~~l~~g~~d~~~ 79 (243)
T 4h5g_A 11 KGKLVVATSP--DYAPFEFQSLVDGKNQVVGADIDMAQAIADELGVKLE--ILS-------MSFDNVLTSLQTGKADLAV 79 (243)
T ss_dssp HTEEEEEECC--CBTTTBEEEEETTEEEEESHHHHHHHHHHHHHTSEEE--EEE-------CCGGGHHHHHHTTSCSEEC
T ss_pred CCEEEEEECC--CCCCcEeeeccCCCCcEEEeHHHHHHHHHHHhCCceE--Eec-------ccHHHHHHHHHcCCCCccc
Confidence 3579999975 899998853 45789999999999999999996654 444 3499999999999999999
Q ss_pred eeeeeecCceeeeeecccccccceEEEEeccCCCCCcceeeccCchhHHHHHHHHHHHHHHHhhhhhcccCCCCCCCccc
Q 002364 542 GDITIVTNRTKIVDFSQPYAASGLVVVVPFRKLNTGAWAFLRPFSPLMWTVTACFFVVVGIVVWILEHRINDEFRGPPKR 621 (930)
Q Consensus 542 ~~~~~t~~r~~~vdft~p~~~~~~~~lv~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (930)
+++++|++|.+.++||.||+..+.++++++...
T Consensus 80 ~~~~~t~eR~~~~~fs~py~~~~~~~~v~~~~~----------------------------------------------- 112 (243)
T 4h5g_A 80 AGISATDERKEVFDFSIPYYENKISFLVHKADV----------------------------------------------- 112 (243)
T ss_dssp SSCBCCHHHHTTEEECSCSBCCCEEEEEEGGGT-----------------------------------------------
T ss_pred ccccCChhHccEEEccCccccCccccccccccc-----------------------------------------------
Confidence 999999999999999999999999999987661
Q ss_pred cchhhhHHHHHHhhhcCcCcccccchhhhHHHHHHHHHhhhhhhhhhhheeeecccccCCCCChHHhhhCCCCeEEEeCc
Q 002364 622 QVITILWFSLSTLFFAHKENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLYSPINGIESLRKSDDPIGYQEGS 701 (930)
Q Consensus 622 ~~~~~~~~~~~~l~~~~~~~~~s~s~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~~v~~~~~s 701 (930)
..+++++||. +++|++..|+
T Consensus 113 ----------------------------------------------------------~~~~~~~dl~--g~~i~v~~g~ 132 (243)
T 4h5g_A 113 ----------------------------------------------------------EKYKDLTSLE--SANIAAQKGT 132 (243)
T ss_dssp ----------------------------------------------------------TTCCSHHHHH--TSEEEEETTS
T ss_pred ----------------------------------------------------------ccccccccCC--CCEEEecCCc
Confidence 5788999998 8899999999
Q ss_pred hHHHHHHHhhccccccceecCCHHHHHHHHhcCCCCCceEEEEecchhHHHHHhcCccEEEe---CccccccceeeeeCC
Q 002364 702 FAEYYLSQELNISKSRLVALRTPEDYAKALKDGPGKGGVAAVVDERPYVELFLSSQCSFRIV---GQEFTKSGWGFAFPR 778 (930)
Q Consensus 702 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~i~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~k 778 (930)
....++.+.. +..+++.+++.++++++|.+ |++|+++.+...+.+++.++..+... .......+++++++|
T Consensus 133 ~~~~~l~~~~--~~~~i~~~~~~~~~~~~l~~----GrvD~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~k 206 (243)
T 4h5g_A 133 VPESMVKEQL--PKAQLTSLTNMGEAVNELQA----GKIDAVHMDEPVALSYAAKNAGLAVATVSLKMKDGDANAVALRK 206 (243)
T ss_dssp HHHHHHHHHC--TTSEEEEESCHHHHHHHHHH----TSCSEEEEEHHHHHHHHHHCTTEEECSCCCCCCSSCCBCCEEES
T ss_pred HHHHHHHHhc--ccceeEEeCCHHHHHHHHHc----CCccEEEecHHHHHHHHHHCCCCceeeccCCcccCceEEEEEeC
Confidence 8888886543 55678899999999999999 99999999999888887776654433 233445678999999
Q ss_pred CCc-chHHHHHHHHhhhhccchHHHHHHhcc
Q 002364 779 DSP-LAVDLSSAILELAENGDLQRIHDKWLM 808 (930)
Q Consensus 779 ~sp-l~~~i~~~i~~l~e~G~~~~~~~~w~~ 808 (930)
++| |++.||++|.+|+++|.+++|.+||+.
T Consensus 207 ~~~~L~~~~n~aL~~l~~dG~~~~i~~Kw~~ 237 (243)
T 4h5g_A 207 NSDDLKEVVDKVIQKLKDEGTYQSYLEKAAS 237 (243)
T ss_dssp SCHHHHHHHHHHHHHHHHHTHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 998 999999999999999999999999987
No 42
>2a5s_A N-methyl-D-aspartate receptor nmdar2A subunit, NMDA receptor nmdar2A; protein-ligand complex, metal transport,membrane protein; HET: GLU; 1.70A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 2a5t_B* 3oen_A* 3oel_A* 3oem_A* 3oek_A*
Probab=99.91 E-value=1e-24 Score=232.50 Aligned_cols=241 Identities=21% Similarity=0.398 Sum_probs=188.1
Q ss_pred cCCCceeEEEecCCccccceeeecc---CCcceEeeeHHHHHHHHHhCCCcccEEEEecCC-CC-CCCCHHHHHHHHHcC
Q 002364 461 PNNGKLLKIGVPNRASYREFVSKVR---GSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGD-GH-KNPSYTQLVDSITTG 535 (930)
Q Consensus 461 ~~~g~~lrv~~~~~~~~~p~~~~~~---~~~~~~G~~~dl~~~l~~~l~f~~~~~~~~~~~-~~-~~~~~~~~~~~l~~g 535 (930)
|.+|++||||++..++|++|....+ +.+++.|+++||++++++++|+++++...+.+. |. .+++|++++.+|.+|
T Consensus 25 ~~~~~~lrvgv~~~~~~~~~~~~~~~~~~~~~~~G~~~dl~~~i~~~lg~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~g 104 (284)
T 2a5s_A 25 PLTETCVRNTVPCRKFVKINNSTNEGMNVKKCCKGFCIDILKKLSRTVKFTYDLYLVTNGKHGKKVNNVWNGMIGEVVYQ 104 (284)
T ss_dssp CC-CCCCTTCEEEEEEEESSSSSSCEEEEEEEEESHHHHHHHHHHHHHTCCEEEEECCSSSSCCEETTEECHHHHHHHTT
T ss_pred CCCCccccccccccccccccccccCCCCCcceeeEEhHHHHHHHHHHCCCCEEEEEccCCccCcccCCCHHHHHHHHhcC
Confidence 4679999999998767776643221 124789999999999999999875555443221 11 357899999999999
Q ss_pred cccEEEeeeeeecCceeeeeecccccccceEEEEeccCCCCCcceeeccCchhHHHHHHHHHHHHHHHhhhhhcccCCCC
Q 002364 536 VFDAVVGDITIVTNRTKIVDFSQPYAASGLVVVVPFRKLNTGAWAFLRPFSPLMWTVTACFFVVVGIVVWILEHRINDEF 615 (930)
Q Consensus 536 ~~D~~~~~~~~t~~r~~~vdft~p~~~~~~~~lv~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~~~~~~~~~~~~~~ 615 (930)
++|+++++++++++|.+.++||.||+.++.+++++++.
T Consensus 105 ~~D~~~~~~~~t~~R~~~~~fs~p~~~~~~~~~~~~~~------------------------------------------ 142 (284)
T 2a5s_A 105 RAVMAVGSLTINEERSEVVDFSVPFVETGISVMVSRGT------------------------------------------ 142 (284)
T ss_dssp SCSEECSSCBCCHHHHTTEEECCCCEEECEEEEEETTC------------------------------------------
T ss_pred CcCEEEEEEEEeccccceEEeccCchhcCEEEEEECCc------------------------------------------
Confidence 99999999999999999999999999999999999765
Q ss_pred CCCccccchhhhHHHHHHhhhcCcCcccccchhhhHHHHHHHHHhhhhhhhhhhheeeecccccCCCCChHHhhh-----
Q 002364 616 RGPPKRQVITILWFSLSTLFFAHKENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLYSPINGIESLRK----- 690 (930)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~s~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~----- 690 (930)
++++++||..
T Consensus 143 -----------------------------------------------------------------~~~~~~dl~~~~~~~ 157 (284)
T 2a5s_A 143 -----------------------------------------------------------------QVTGLSDKKFQRPHD 157 (284)
T ss_dssp -----------------------------------------------------------------CCCSTTSHHHHSGGG
T ss_pred -----------------------------------------------------------------ccccccccccCChhH
Confidence 2233333321
Q ss_pred --CCCCeEEEeCchHHHHHHHhhccccccceec--CCHHHHHHHHhcCCCCCceEEEEecchhHHHHHhcC--ccEEEeC
Q 002364 691 --SDDPIGYQEGSFAEYYLSQELNISKSRLVAL--RTPEDYAKALKDGPGKGGVAAVVDERPYVELFLSSQ--CSFRIVG 764 (930)
Q Consensus 691 --~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~g~~~a~i~~~~~~~~~~~~~--~~l~~~~ 764 (930)
.+.++|+..++.....+.+.+.....++..+ .+.++++++|.+ |++||++.+...+.|++++. |++.+++
T Consensus 158 l~~~~~vg~v~~~s~~~~l~~~~~~~~~~i~~~~~~~~~~~l~~l~~----G~vDa~i~d~~~~~~~~~~~~~~~l~~~~ 233 (284)
T 2a5s_A 158 YSPPFRFGTVPNGSTERNIRNNYPYMHQYMTRFNQRGVEDALVSLKT----GKLDAFIYDAAVLNYKAGRDEGCKLVTIG 233 (284)
T ss_dssp SSSCCCEECCTTSHHHHHHHTTCHHHHHHHGGGCCSSHHHHHHHHHT----TSCSEEEEEHHHHHHHHHTCTTSCEEEEE
T ss_pred cCCCceEEEEeCCchHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHc----CCeeEEEEchHHHHHHHhcCCCCCEEEeC
Confidence 2568997754445555544321111134555 789999999999 99999999999999998875 7888874
Q ss_pred --ccccccceeeeeCCCCcchHHHHHHHHhhhhccchHHHHHHhcccCCCC
Q 002364 765 --QEFTKSGWGFAFPRDSPLAVDLSSAILELAENGDLQRIHDKWLMKSSCS 813 (930)
Q Consensus 765 --~~~~~~~~~~~~~k~spl~~~i~~~i~~l~e~G~~~~~~~~w~~~~~c~ 813 (930)
..+...+++++++|+++|++.||++|.++.++|.+++|.+||+.. .|.
T Consensus 234 ~~~~~~~~~~~~a~~k~~~l~~~ln~~l~~l~~~g~~~~i~~kw~~~-~c~ 283 (284)
T 2a5s_A 234 SGYIFATTGYGIALQKGSPWKRQIDLALLQFVGDGEMEELETLWLTG-ICH 283 (284)
T ss_dssp CCCGGGCEEECCEEETTCTTHHHHHHHHHHHHHHTHHHHHHHHHTCC-CCC
T ss_pred CccccccCceEEEecCCCHHHHHHHHHHHHHHhCChHHHHHHHhhhc-cCC
Confidence 567778899999999999999999999999999999999999984 675
No 43
>4gvo_A LMO2349 protein; structural genomics, IDP05245, L-cystine, ABC transporter, periplasmic binding protein, niaid; HET: HIS; 1.45A {Listeria monocytogenes} PDB: 2o1m_A
Probab=99.90 E-value=1.2e-23 Score=218.95 Aligned_cols=223 Identities=16% Similarity=0.225 Sum_probs=185.2
Q ss_pred CCceeEEEecCCccccceeeeccCCcceEeeeHHHHHHHHHhC-CCcccEEEEecCCCCCCCCHHHHHHHHHcCcccEEE
Q 002364 463 NGKLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLL-PYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVV 541 (930)
Q Consensus 463 ~g~~lrv~~~~~~~~~p~~~~~~~~~~~~G~~~dl~~~l~~~l-~f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~D~~~ 541 (930)
+.++|+||+.. +|+||.+.+. ++++.|+++||+++++++| |++++ +++ ..|++++.+|.+|++|+++
T Consensus 7 ~~~tl~vg~~~--~~pP~~~~d~-~G~~~G~~vdl~~~ia~~l~g~~~~--~~~-------~~~~~~~~~l~~g~~D~~~ 74 (243)
T 4gvo_A 7 KVQTITVGTGT--QFPNVCFLDE-NGKLTGYDVELVKEIDKRLPGYKFK--FKT-------MDFSNLLVSLGAGKVDIVA 74 (243)
T ss_dssp -CEEEEEEECS--EETTTEEECT-TSCEESHHHHHHHHHHHTCTTEEEE--EEE-------CCGGGHHHHHHTTSCSEEC
T ss_pred cCCeEEEEECC--CCCCeEEECC-CCcEEEhHHHHHHHHHHhccCCeEE--EEE-------CCHHHHHHHHHCCCCCEec
Confidence 46789999986 8999999875 7899999999999999998 86644 444 3499999999999999999
Q ss_pred eeeeeecCceeeeeecccccccceEEEE-eccCCCCCcceeeccCchhHHHHHHHHHHHHHHHhhhhhcccCCCCCCCcc
Q 002364 542 GDITIVTNRTKIVDFSQPYAASGLVVVV-PFRKLNTGAWAFLRPFSPLMWTVTACFFVVVGIVVWILEHRINDEFRGPPK 620 (930)
Q Consensus 542 ~~~~~t~~r~~~vdft~p~~~~~~~~lv-~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (930)
+++++|++|.+.++||.||+.....+++ ++..
T Consensus 75 ~~~~~t~eR~~~~~fs~p~~~~~~~~~~~~~~~----------------------------------------------- 107 (243)
T 4gvo_A 75 HQMEKSKEREKKFLFNDVAYNNFPLQLTVLDSN----------------------------------------------- 107 (243)
T ss_dssp SCCBCCHHHHHHSEECSSCCEECCEEEEEETTC-----------------------------------------------
T ss_pred ccCCCCHHHhhhhhhhhhhcccccceEEEeccc-----------------------------------------------
Confidence 9999999999999999998776655554 4433
Q ss_pred ccchhhhHHHHHHhhhcCcCcccccchhhhHHHHHHHHHhhhhhhhhhhheeeecccccCCCCChHHhhhCCCCeEEEeC
Q 002364 621 RQVITILWFSLSTLFFAHKENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLYSPINGIESLRKSDDPIGYQEG 700 (930)
Q Consensus 621 ~~~~~~~~~~~~~l~~~~~~~~~s~s~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~~v~~~~~ 700 (930)
..+++++||. |+++|+..|
T Consensus 108 -----------------------------------------------------------~~~~~~~dL~--g~~v~v~~g 126 (243)
T 4gvo_A 108 -----------------------------------------------------------NSINSTKDLA--GKRVITSAT 126 (243)
T ss_dssp -----------------------------------------------------------CSCSSGGGGT--TCEEEECTT
T ss_pred -----------------------------------------------------------cccCchHHhc--CCeEEEecC
Confidence 6789999997 899999999
Q ss_pred chHHHHHHHhh---ccccccceecCCHHHHHHHHhcCCCCCceEEEEecchhHHHHHhcCc-cEEEeCccccccceeeee
Q 002364 701 SFAEYYLSQEL---NISKSRLVALRTPEDYAKALKDGPGKGGVAAVVDERPYVELFLSSQC-SFRIVGQEFTKSGWGFAF 776 (930)
Q Consensus 701 s~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~i~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~ 776 (930)
+....++.... .........+.+.++++++|.. |++|+++.+...+.|+.++.. ++.++++.+...++++++
T Consensus 127 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~----GrvDa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (243)
T 4gvo_A 127 SNGALVLKKINEEQGNNFEIAYEGQGSNDTANQLKT----GRADATISTPFAVDFQNKTSAIKEKVVGDVLSNAKVYFML 202 (243)
T ss_dssp CHHHHHHHHHHHHTTSCSEEEECCSGGGSHHHHHHH----TSCSBEEECHHHHHHHHHTCSSCEEEEEEEEECCEECCEE
T ss_pred chHHHHHHHHHHhccccceeccccCChHHHHHHHHc----CCccEEEccHHHHHHHHhhCCCceEEeccCCCCCcEEEEE
Confidence 87766664321 1111223356788899999999 999999999998888877754 677888888888899999
Q ss_pred CCCCc-chHHHHHHHHhhhhccchHHHHHHhccc
Q 002364 777 PRDSP-LAVDLSSAILELAENGDLQRIHDKWLMK 809 (930)
Q Consensus 777 ~k~sp-l~~~i~~~i~~l~e~G~~~~~~~~w~~~ 809 (930)
+|++| |++.||++|.+|.++|.+++|.+||++.
T Consensus 203 ~k~~~~l~~~in~~l~~l~~~G~~~~i~~kw~g~ 236 (243)
T 4gvo_A 203 GKDETKLSKKVDEALQSIIDDGTLKKLSEKWLGA 236 (243)
T ss_dssp CTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHCG
T ss_pred eCCCHHHHHHHHHHHHHHHhCcHHHHHHHHHCCC
Confidence 99998 9999999999999999999999999983
No 44
>2rc8_A Glutamate [NMDA] receptor subunit 3A; membrane protein, cell junction, glycoprotein, ION transport channel, magnesium; 1.45A {Rattus norvegicus} PDB: 2rc7_A 2rc9_A 2rca_A 2rcb_A
Probab=99.90 E-value=1.3e-23 Score=225.07 Aligned_cols=226 Identities=25% Similarity=0.447 Sum_probs=182.3
Q ss_pred cccceeeeccCCcceEeeeHHHHHHHHHhCCCcccEEEEecCC-CC-CCCCHHHHHHHHHcCcccEEEeeeeeecCceee
Q 002364 476 SYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGD-GH-KNPSYTQLVDSITTGVFDAVVGDITIVTNRTKI 553 (930)
Q Consensus 476 ~~~p~~~~~~~~~~~~G~~~dl~~~l~~~l~f~~~~~~~~~~~-~~-~~~~~~~~~~~l~~g~~D~~~~~~~~t~~r~~~ 553 (930)
+++||.+. +++.|+++||++++++++|+++++..++.+. |. .+++|++++++|.+|++|+++++++++++|.+.
T Consensus 58 ~~~P~~~~----~~~~G~~vdll~~ia~~lg~~~~~~~~~~~~~g~~~~~~w~~~~~~l~~g~~D~~~~~~~~t~eR~~~ 133 (294)
T 2rc8_A 58 DTVPIKFK----KCCYGYCIDLLEQLAEDMNFDFDLYIVGDGKYGAWKNGHWTGLVGDLLSGTANMAVTSFSINTARSQV 133 (294)
T ss_dssp CCCCGGGE----EEEESHHHHHHHHHHHHHTEEEEEEECTTCCCCCEETTEECHHHHHHHHTSCSEECSSCBCCHHHHTT
T ss_pred CCCCcccc----CCceEEhHHHHHHHHHHcCCcEEEEECCCCcccccCCCCHHHHHHHHHCCCcCEEEeccccCHhHhce
Confidence 44555443 2589999999999999999775555443221 11 356899999999999999999999999999999
Q ss_pred eeecccccccceEEEEeccCCCCCcceeeccCchhHHHHHHHHHHHHHHHhhhhhcccCCCCCCCccccchhhhHHHHHH
Q 002364 554 VDFSQPYAASGLVVVVPFRKLNTGAWAFLRPFSPLMWTVTACFFVVVGIVVWILEHRINDEFRGPPKRQVITILWFSLST 633 (930)
Q Consensus 554 vdft~p~~~~~~~~lv~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 633 (930)
++||.||+..+.+++++++.
T Consensus 134 ~~fs~P~~~~~~~i~~~~~~------------------------------------------------------------ 153 (294)
T 2rc8_A 134 IDFTSPFFSTSLGILVRTRG------------------------------------------------------------ 153 (294)
T ss_dssp SEECSCSEEEEEEEEEETTS------------------------------------------------------------
T ss_pred EEEccchHhcceEEEEECCC------------------------------------------------------------
Confidence 99999999999999998876
Q ss_pred hhhcCcCcccccchhhhHHHHHHHHHhhhhhhhhhhheeeecccccCCCCChHHhh----hCCCCeEEEeCchHHHHHHH
Q 002364 634 LFFAHKENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLYSPINGIESLR----KSDDPIGYQEGSFAEYYLSQ 709 (930)
Q Consensus 634 l~~~~~~~~~s~s~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~----~~~~~v~~~~~s~~~~~l~~ 709 (930)
..|++++||. ..++++|+..|+....++.+
T Consensus 154 ----------------------------------------------~~i~~~~dL~~~~~~~g~~vg~~~gs~~~~~l~~ 187 (294)
T 2rc8_A 154 ----------------------------------------------TELSGIHDPKLHHPSQGFRFGTVRESSAEDYVRQ 187 (294)
T ss_dssp ----------------------------------------------CCCCSTTCHHHHSCCTTCCEECBTTSHHHHHHHH
T ss_pred ----------------------------------------------CCcCChhhhhhcCcccCeEEEEEcCChHHHHHHH
Confidence 4677888886 24788999999988888865
Q ss_pred hhcccc--ccceecCCHHHHHHHHhcCCCCCceEEEEecchhHHHHHhc--CccEEEeCccccccceeeeeCCCCcchHH
Q 002364 710 ELNISK--SRLVALRTPEDYAKALKDGPGKGGVAAVVDERPYVELFLSS--QCSFRIVGQEFTKSGWGFAFPRDSPLAVD 785 (930)
Q Consensus 710 ~~~~~~--~~~~~~~~~~~~~~~l~~~~~~g~~~a~i~~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~~~k~spl~~~ 785 (930)
.+.... .+...+.+.++.+++|.++ +|++||++.+...+.|++++ .|++.++++.+...+++++++|+++|++.
T Consensus 188 ~~~~~~~~i~~~~~~~~~~~~~~l~~~--~GrvDa~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ia~~k~~~l~~~ 265 (294)
T 2rc8_A 188 SFPEMHEYMRRYNVPATPDGVQYLKND--PEKLDAFIMDKALLDYEVSIDADCKLLTVGKPFAIEGYGIGLPPNSPLTSN 265 (294)
T ss_dssp HCHHHHHHHGGGCBSSHHHHHHHHHSS--SCCCSEEEEEHHHHHHHHHTCSSSCEEECSCCEEEEEECCEECTTCTHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHhc--cCceeEEEecHHHHHHHHhhCCCCCEEEcCCcccccceEEEecCCCHHHHH
Confidence 431111 1223578899999999873 26899999999999998876 47899999888888999999999999999
Q ss_pred HHHHHHhhhhccchHHHHHHhcccCCCC
Q 002364 786 LSSAILELAENGDLQRIHDKWLMKSSCS 813 (930)
Q Consensus 786 i~~~i~~l~e~G~~~~~~~~w~~~~~c~ 813 (930)
||++|.+|.++|.+++|.+||+....|.
T Consensus 266 in~al~~l~~~G~~~~l~~kw~~~~~c~ 293 (294)
T 2rc8_A 266 ISELISQYKSHGFMDVLHDKWYKVVPCG 293 (294)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHCCC----
T ss_pred HHHHHHHHHhCCCHHHHHHhhcCCCCCC
Confidence 9999999999999999999999988886
No 45
>3kzg_A Arginine 3RD transport system periplasmic binding protein; arginine transport system, protein structure initiative II(PSI II); 2.06A {Legionella pneumophila subsp} SCOP: c.94.1.0
Probab=99.89 E-value=1.2e-22 Score=210.65 Aligned_cols=219 Identities=18% Similarity=0.295 Sum_probs=193.0
Q ss_pred ceeEEEecCCccccceeee-ccCCcceEeeeHHHHHHHHHhCCCcccEEEEecCCCCCCCCHHHHHHHHHcCcccEEEee
Q 002364 465 KLLKIGVPNRASYREFVSK-VRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGD 543 (930)
Q Consensus 465 ~~lrv~~~~~~~~~p~~~~-~~~~~~~~G~~~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~D~~~~~ 543 (930)
++|+||+.. +|+||.+. +. ++++.|+++||++++++++|+++++...+ |.+++.+|.+|++|+++++
T Consensus 3 ~~l~v~~~~--~~~P~~~~~~~-~g~~~G~~~dl~~~i~~~~g~~~~~~~~~---------~~~~~~~l~~g~~D~~~~~ 70 (237)
T 3kzg_A 3 LNLTIGTSK--FNPPFEVWSGN-NSSLYGFDIDLMQEICRRLHATCTFEAYI---------FDDLFPALKNREVDLVIAS 70 (237)
T ss_dssp CEEEEEEES--EETTTEECCCT-TSCCBSHHHHHHHHHHHHTTCEEEEEEEC---------GGGHHHHHHTTSSSEECSS
T ss_pred ceEEEEECC--CCCCeEEEeCC-CCCEeeehHHHHHHHHHHhCCceEEEEcC---------HHHHHHHHhCCCCCEEEEc
Confidence 679999995 79999998 54 88899999999999999999776665543 9999999999999999988
Q ss_pred eeeecCceeeeeecccccccceEEEEeccCCCCCcceeeccCchhHHHHHHHHHHHHHHHhhhhhcccCCCCCCCccccc
Q 002364 544 ITIVTNRTKIVDFSQPYAASGLVVVVPFRKLNTGAWAFLRPFSPLMWTVTACFFVVVGIVVWILEHRINDEFRGPPKRQV 623 (930)
Q Consensus 544 ~~~t~~r~~~vdft~p~~~~~~~~lv~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 623 (930)
+..+++|.+.++||.||.....++++++..
T Consensus 71 ~~~~~~r~~~~~fs~p~~~~~~~~~~~~~~-------------------------------------------------- 100 (237)
T 3kzg_A 71 MIITDERKKHFIFSLPYMESNSQYITTVDS-------------------------------------------------- 100 (237)
T ss_dssp CBCCTTGGGTCEECCCSBCCEEEEEEETTC--------------------------------------------------
T ss_pred cccChhHhccceeeeeeeecceEEEEECCC--------------------------------------------------
Confidence 999999999999999999999999998766
Q ss_pred hhhhHHHHHHhhhcCcCcccccchhhhHHHHHHHHHhhhhhhhhhhheeeecccccCCCCChHHhhhCCCCeEEEeCchH
Q 002364 624 ITILWFSLSTLFFAHKENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLYSPINGIESLRKSDDPIGYQEGSFA 703 (930)
Q Consensus 624 ~~~~~~~~~~l~~~~~~~~~s~s~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~~v~~~~~s~~ 703 (930)
++++++||. |++||+..|+..
T Consensus 101 ---------------------------------------------------------~~~~~~dL~--g~~i~~~~g~~~ 121 (237)
T 3kzg_A 101 ---------------------------------------------------------KISTFDDLH--GKKIGVRKGTPY 121 (237)
T ss_dssp ---------------------------------------------------------SCCSGGGGT--TCEEEEETTSTH
T ss_pred ---------------------------------------------------------CCCCHHHhC--CCEEEEecCCHH
Confidence 388999997 889999999987
Q ss_pred HHHHHHhhccccccceecCCHHHHHHHHhcCCCCCceEEEEecchhHHHHHhcCc--------cEEEeCccc-cccceee
Q 002364 704 EYYLSQELNISKSRLVALRTPEDYAKALKDGPGKGGVAAVVDERPYVELFLSSQC--------SFRIVGQEF-TKSGWGF 774 (930)
Q Consensus 704 ~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~i~~~~~~~~~~~~~~--------~l~~~~~~~-~~~~~~~ 774 (930)
...+.+.. +..+++.+.+.++++++|.+ |++|+++.+...+.+++.+.. ++.+++..+ ...++++
T Consensus 122 ~~~~~~~~--~~~~~~~~~~~~~~~~~l~~----G~vDa~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 195 (237)
T 3kzg_A 122 ARQVLSEN--RNNQVIFYELIQDMLLGLSN----NQVDASLMDYEAAKYWMASEPYAYKLIGKKYKLIGKKISIGEGYSI 195 (237)
T ss_dssp HHHHHHTC--SSCEEEEESSHHHHHHHHHT----TSSSEEEEEHHHHHHHHTTSSTTHHHHCCSEEEEEEEEECTTCBCC
T ss_pred HHHHHHhC--CCCcEEEeCCHHHHHHHHHc----CCCCEEEeCcHHHHHHHHhCCccccccCCceEEecCccccCccEEE
Confidence 77775543 34577888999999999999 999999999999999988865 788888777 7788999
Q ss_pred eeCCCCc-chHHHHHHHHhhhhccchHHHHHHhcccC
Q 002364 775 AFPRDSP-LAVDLSSAILELAENGDLQRIHDKWLMKS 810 (930)
Q Consensus 775 ~~~k~sp-l~~~i~~~i~~l~e~G~~~~~~~~w~~~~ 810 (930)
+++|++| +++.||++|.++.++|.+++|.+||+...
T Consensus 196 ~~~k~~~~l~~~l~~~l~~l~~~G~~~~i~~k~~~~~ 232 (237)
T 3kzg_A 196 MANPDQFVLIKKINKILLEMEADGTYLRLYSEYFEGH 232 (237)
T ss_dssp EECGGGHHHHHHHHHHHHHHHHSSHHHHHHHHHC---
T ss_pred EEcCCCHHHHHHHHHHHHHHHHCCcHHHHHHHHhCcc
Confidence 9999977 99999999999999999999999999843
No 46
>2v3u_A Glutamate receptor delta-2 subunit; postsynaptic membrane, ionotropic glutamate receptors, transmembrane, membrane protein; 1.74A {Rattus norvegicus} PDB: 2v3t_A
Probab=99.88 E-value=3.5e-22 Score=210.82 Aligned_cols=232 Identities=23% Similarity=0.363 Sum_probs=181.6
Q ss_pred CCceeEEEecCCccccceeeeccC----CcceEeeeHHHHHHHHHhCCCcccEEEEec---CCCCCCCCHHHHHHHHHcC
Q 002364 463 NGKLLKIGVPNRASYREFVSKVRG----SDMFQGFCIDVFTAAVNLLPYAVPYQFVAF---GDGHKNPSYTQLVDSITTG 535 (930)
Q Consensus 463 ~g~~lrv~~~~~~~~~p~~~~~~~----~~~~~G~~~dl~~~l~~~l~f~~~~~~~~~---~~~~~~~~~~~~~~~l~~g 535 (930)
+|++|||++.. ++||.+.+.+ .+++.|+++||++++++++|+++++...+. |....+.+|++++.+|.+|
T Consensus 1 ~~~~l~v~~~~---~pP~~~~~~~~~g~~g~~~G~~~dl~~~i~~~lg~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~g 77 (265)
T 2v3u_A 1 GGVVLRVVTVL---EEPFVMVSENVLGKPKKYQGFSIDVLDALSNYLGFNYEIYVAPDHKYGSPQEDGTWNGLVGELVFK 77 (265)
T ss_dssp CCCEEEEEECC---BTTTBEEECCSTTCCCEEESHHHHHHHHHHHHHTCEEEEEECTTCCCCCBCTTSCBCHHHHHHHTT
T ss_pred CCeEEEEEEec---cCCeEEEecCCCCCcceEeEEEHHHHHHHHHHcCCcEEEEEccCCcccccCCCCCcchHHHHHHcC
Confidence 47899999995 4788876541 178999999999999999997765554432 2212356899999999999
Q ss_pred cccEEEeeeeeecCceeeeeecccccccceEEEEeccCCCCCcceeeccCchhHHHHHHHHHHHHHHHhhhhhcccCCCC
Q 002364 536 VFDAVVGDITIVTNRTKIVDFSQPYAASGLVVVVPFRKLNTGAWAFLRPFSPLMWTVTACFFVVVGIVVWILEHRINDEF 615 (930)
Q Consensus 536 ~~D~~~~~~~~t~~r~~~vdft~p~~~~~~~~lv~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~~~~~~~~~~~~~~ 615 (930)
++|+++++++++++|.+.++||.||+..+.++++++..
T Consensus 78 ~~D~~~~~~~~t~~R~~~~~fs~p~~~~~~~~~~~~~~------------------------------------------ 115 (265)
T 2v3u_A 78 RADIGISALTITPDRENVVDFTTRYMDYSVGVLLRRGT------------------------------------------ 115 (265)
T ss_dssp SCSEECSSCBCCHHHHTTEEECSCSEEECEEEEEETTC------------------------------------------
T ss_pred CcCeEEeeeEeehhhhccccccceeeeccEEEEEECCC------------------------------------------
Confidence 99999988999999999999999999999999998754
Q ss_pred CCCccccchhhhHHHHHHhhhcCcCcccccchhhhHHHHHHHHHhhhhhhhhhhheeeecccccCCCCChHHhhhCCCCe
Q 002364 616 RGPPKRQVITILWFSLSTLFFAHKENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLYSPINGIESLRKSDDPI 695 (930)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~s~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~~v 695 (930)
+|++++||. + ++
T Consensus 116 -----------------------------------------------------------------~i~~~~dL~--~-~v 127 (265)
T 2v3u_A 116 -----------------------------------------------------------------SIQSLQDLS--K-QT 127 (265)
T ss_dssp -----------------------------------------------------------------CCCSHHHHH--T-CS
T ss_pred -----------------------------------------------------------------Cccchhhhh--h-hh
Confidence 578999997 2 34
Q ss_pred EEE----eCchHHHHHHHhhcccc------------------ccceecCCHHHHHHHHhcCCCCCceEEEEecchhHHHH
Q 002364 696 GYQ----EGSFAEYYLSQELNISK------------------SRLVALRTPEDYAKALKDGPGKGGVAAVVDERPYVELF 753 (930)
Q Consensus 696 ~~~----~~s~~~~~l~~~~~~~~------------------~~~~~~~~~~~~~~~l~~~~~~g~~~a~i~~~~~~~~~ 753 (930)
|+. .++....++.+. +... .++..+.+.++++++|.+ |++ +++.+...+.|+
T Consensus 128 ~v~~g~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~----G~~-a~~~~~~~~~~~ 201 (265)
T 2v3u_A 128 DIPYGTVLDSAVYQHVRMK-GLNPFERDSMYSQMWRMINRSNGSENNVLESQAGIQKVKY----GNY-AFVWDAAVLEYV 201 (265)
T ss_dssp SSCEECBTTSHHHHHHHHH-HTCTTCSCTHHHHHHHHHCC-----CCBSSHHHHHHHHHH----SSC-EEEEEHHHHHHH
T ss_pred cEEEEEeccHHHHHHHHhc-CCCcccccHHHHHHHHHHHhhcCcccccCCHHHHHHHHHc----CCE-EEEEcchHHHHH
Confidence 443 344455555331 1111 123467899999999999 899 888888888888
Q ss_pred Hhc--CccEEEeCccccccceeeeeCCCCcchHHHHHHHHhhhhccchHHHHHHhcc-cCCCC
Q 002364 754 LSS--QCSFRIVGQEFTKSGWGFAFPRDSPLAVDLSSAILELAENGDLQRIHDKWLM-KSSCS 813 (930)
Q Consensus 754 ~~~--~~~l~~~~~~~~~~~~~~~~~k~spl~~~i~~~i~~l~e~G~~~~~~~~w~~-~~~c~ 813 (930)
..+ .|++.+++..+...+++++++|++||++.||++|.+|.++|.+++|.++|+. ...|.
T Consensus 202 ~~~~~~~~l~~~~~~~~~~~~~~~~~k~~~l~~~in~~l~~l~~~g~~~~i~~kw~~~~~~c~ 264 (265)
T 2v3u_A 202 AINDPDCSFYTVGNTVADRGYGIALQHGSPYRDVFSQRILELQQSGDMDILKHKWWPKNGQCD 264 (265)
T ss_dssp HHHCTTCCEEEEC---CCEEECCEEETTCTTHHHHHHHHHHHHHHTHHHHHHHHHCCCCCC--
T ss_pred HhcCCCccEEEeccccCCcceEEEEeCCCccHHHHHHHHHHHhhCChHHHHHhhcCCCcCcCC
Confidence 765 3679999888878889999999999999999999999999999999999998 66774
No 47
>4f3p_A Glutamine-binding periplasmic protein; ssgcid, structural genomics, GLUT seattle structural genomics center for infectious disease; 2.40A {Burkholderia pseudomallei}
Probab=99.88 E-value=4.6e-22 Score=207.83 Aligned_cols=222 Identities=23% Similarity=0.447 Sum_probs=195.7
Q ss_pred CCCceeEEEecCCccccceeeeccCCcceEeeeHHHHHHHHHhCCCcccEEEEecCCCCCCCCHHHHHHHHHcCcccEEE
Q 002364 462 NNGKLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVV 541 (930)
Q Consensus 462 ~~g~~lrv~~~~~~~~~p~~~~~~~~~~~~G~~~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~D~~~ 541 (930)
...++|+|++.. .|+||.+.+ ++++.|+++||++.+++++|+++++...+ |.+++.++.+|++|+++
T Consensus 21 ~~~~~l~v~~~~--~~~P~~~~~--~g~~~G~~~dl~~~i~~~~g~~~~~~~~~---------~~~~~~~l~~g~~D~~~ 87 (249)
T 4f3p_A 21 SMAKELVVGTDT--SFMPFEFKQ--GDKYVGFDLDLWAEIAKGAGWTYKIQPMD---------FAGLIPALQTQNIDVAL 87 (249)
T ss_dssp ---CCEEEEEES--CBTTTBEEE--TTEEESHHHHHHHHHHHHHTCCEEEEEEC---------GGGHHHHHHTTSCSEEE
T ss_pred ccCceEEEEeCC--CCCCeEEec--CCeEEEEhHHHHHHHHHHcCCceEEEecC---------HHHHHHHHHCCCCCEEE
Confidence 356789999985 789998873 78899999999999999999776665544 99999999999999998
Q ss_pred eeeeeecCceeeeeecccccccceEEEEeccCCCCCcceeeccCchhHHHHHHHHHHHHHHHhhhhhcccCCCCCCCccc
Q 002364 542 GDITIVTNRTKIVDFSQPYAASGLVVVVPFRKLNTGAWAFLRPFSPLMWTVTACFFVVVGIVVWILEHRINDEFRGPPKR 621 (930)
Q Consensus 542 ~~~~~t~~r~~~vdft~p~~~~~~~~lv~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (930)
+++..+++|.+.+.||.||.....++++++..
T Consensus 88 ~~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~------------------------------------------------ 119 (249)
T 4f3p_A 88 SGMTIKEERRKAIDFSDPYYDSGLAAMVQANN------------------------------------------------ 119 (249)
T ss_dssp EEEECCHHHHTTEEECSCCEEEEEEEEEETTC------------------------------------------------
T ss_pred eccccCHHHHcCcceecceeeccEEEEEECCC------------------------------------------------
Confidence 88999999999999999999999999998776
Q ss_pred cchhhhHHHHHHhhhcCcCcccccchhhhHHHHHHHHHhhhhhhhhhhheeeecccccCCCCChHHhhhCCCCeEEEeCc
Q 002364 622 QVITILWFSLSTLFFAHKENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLYSPINGIESLRKSDDPIGYQEGS 701 (930)
Q Consensus 622 ~~~~~~~~~~~~l~~~~~~~~~s~s~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~~v~~~~~s 701 (930)
+.+++++||. |++||+..|+
T Consensus 120 ----------------------------------------------------------~~i~~~~dL~--g~~i~v~~g~ 139 (249)
T 4f3p_A 120 ----------------------------------------------------------TTIKSIDDLN--GKVIAAKTGT 139 (249)
T ss_dssp ----------------------------------------------------------CSCCSSGGGT--TSEEEEETTS
T ss_pred ----------------------------------------------------------CCcCChHHhC--CCEEEEeCCC
Confidence 5789999997 8899999999
Q ss_pred hHHHHHHHhhccccccceecCCHHHHHHHHhcCCCCCceEEEEecchhHHHHHhcCc--cEEEeCccccccceeeeeCCC
Q 002364 702 FAEYYLSQELNISKSRLVALRTPEDYAKALKDGPGKGGVAAVVDERPYVELFLSSQC--SFRIVGQEFTKSGWGFAFPRD 779 (930)
Q Consensus 702 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~i~~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~~k~ 779 (930)
....++.+.. +..+++.+.+.++++++|.+ |++|+++.+...+.+++.+.. ++.+++..+...+++++++|+
T Consensus 140 ~~~~~l~~~~--~~~~~~~~~~~~~~~~~L~~----GrvDa~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~k~ 213 (249)
T 4f3p_A 140 ATIDWIKAHL--KPKEIRQFPNIDQAYLALEA----GRVDAAMHDTPNVLFFVNNEGKGRVKVAGAPVSGDKYGIGFPKG 213 (249)
T ss_dssp HHHHHHHHHC--CCSEEEEESSHHHHHHHHHT----TSSSEEEEEHHHHHHHHHTTTTTTEEEEEEEEEEEEEEEEEETT
T ss_pred hHHHHHHhcC--CCceEEEcCCHHHHHHHHHc----CCeeEEEeCcHHHHHHHHhCCCCceEEecCCCCCccEEEEEcCC
Confidence 8888886543 45678888999999999999 999999999999999988764 588888888888899999999
Q ss_pred CcchHHHHHHHHhhhhccchHHHHHHhcccC
Q 002364 780 SPLAVDLSSAILELAENGDLQRIHDKWLMKS 810 (930)
Q Consensus 780 spl~~~i~~~i~~l~e~G~~~~~~~~w~~~~ 810 (930)
+|+++.||++|.++.++|.+++|.++|++..
T Consensus 214 ~~l~~~l~~~l~~l~~~g~~~~i~~k~~~~~ 244 (249)
T 4f3p_A 214 SPLVAKVNAELARMKADGRYAKIYKKWFGSE 244 (249)
T ss_dssp CTHHHHHHHHHHHHHHHTHHHHHHHHHHSSC
T ss_pred chHHHHHHHHHHHHHhCCcHHHHHHHHcCCC
Confidence 9999999999999999999999999999843
No 48
>3k4u_A Binding component of ABC transporter; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; HET: LYS; 2.62A {Wolinella succinogenes} SCOP: c.94.1.0
Probab=99.88 E-value=3.6e-22 Score=208.08 Aligned_cols=225 Identities=18% Similarity=0.319 Sum_probs=197.2
Q ss_pred CCceeEEEecCCccccceeeeccCCcceEeeeHHHHHHHHHhCCCcccEEEEecCCCCCCCCHHHHHHHHHcCcccEEEe
Q 002364 463 NGKLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVG 542 (930)
Q Consensus 463 ~g~~lrv~~~~~~~~~p~~~~~~~~~~~~G~~~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~D~~~~ 542 (930)
+.++|||++.. +|+||.+.+. ++++.|+++||++++++++|+++++... +|.+++.+|.+|++|++++
T Consensus 3 ~~~~l~v~~~~--~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~g~~~~~~~~---------~~~~~~~~l~~g~~D~~~~ 70 (245)
T 3k4u_A 3 LRGELRVGLEP--GYLPFEMKDK-KGNVIGFDVDLAREMAKAMGVKLKLVPT---------SWDGLIPGLVTEKFDIIIS 70 (245)
T ss_dssp CCSEEEEEECT--TSTTTCEEET-TTEEESHHHHHHHHHHHHHTCEEEEEEC---------CGGGHHHHHHTTSCSEECS
T ss_pred cCCeEEEEECC--CcCCeeEECC-CCCCccchHHHHHHHHHHhCCeEEEEEc---------cHHHHHHHHhCCCcCEEEe
Confidence 35789999995 8899998865 7899999999999999999976555443 4999999999999999988
Q ss_pred eeeeecCceeeeeecccccccceEEEEeccCCCCCcceeeccCchhHHHHHHHHHHHHHHHhhhhhcccCCCCCCCcccc
Q 002364 543 DITIVTNRTKIVDFSQPYAASGLVVVVPFRKLNTGAWAFLRPFSPLMWTVTACFFVVVGIVVWILEHRINDEFRGPPKRQ 622 (930)
Q Consensus 543 ~~~~t~~r~~~vdft~p~~~~~~~~lv~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 622 (930)
++..+++|.+.+.||.||+....++++++...
T Consensus 71 ~~~~t~~r~~~~~~s~p~~~~~~~~~~~~~~~------------------------------------------------ 102 (245)
T 3k4u_A 71 GMTISQERNLRVNFVEPYIVVGQSLLVKKGLE------------------------------------------------ 102 (245)
T ss_dssp SCBCCHHHHTTSEECSCSEEECEEEEEETTTT------------------------------------------------
T ss_pred cCcCCHHHHhhcCcchhhheeceEEEEECCcc------------------------------------------------
Confidence 89999999999999999999999999988751
Q ss_pred chhhhHHHHHHhhhcCcCcccccchhhhHHHHHHHHHhhhhhhhhhhheeeecccccCCCCChHHhhhCCCCeEEEeCch
Q 002364 623 VITILWFSLSTLFFAHKENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLYSPINGIESLRKSDDPIGYQEGSF 702 (930)
Q Consensus 623 ~~~~~~~~~~~l~~~~~~~~~s~s~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~~v~~~~~s~ 702 (930)
..+++++||...+++||+..|+.
T Consensus 103 ---------------------------------------------------------~~i~~~~dL~~~g~~i~v~~g~~ 125 (245)
T 3k4u_A 103 ---------------------------------------------------------KGVKSYKDLDKPELTLVTKFGVS 125 (245)
T ss_dssp ---------------------------------------------------------TTCCSGGGGCCSSCEEEEETTSH
T ss_pred ---------------------------------------------------------cccCCHHHhccCCcEEEEeCCcH
Confidence 47889999987688899999999
Q ss_pred HHHHHHHhhccccccceecCCHHHHHHHHhcCCCCCceEEEEecchhHHHHHhcCc--cEEEeCccccccceeeeeCCCC
Q 002364 703 AEYYLSQELNISKSRLVALRTPEDYAKALKDGPGKGGVAAVVDERPYVELFLSSQC--SFRIVGQEFTKSGWGFAFPRDS 780 (930)
Q Consensus 703 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~i~~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~~k~s 780 (930)
...++.+.. +..+++.+.+.++++++|.+ |++|+++.+...+.+++.+.. .+..+...+...+++++++|++
T Consensus 126 ~~~~l~~~~--~~~~~~~~~~~~~~~~~L~~----GrvDa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~ 199 (245)
T 3k4u_A 126 AEYAAKRLF--KNAKLKTYDTEAEAVQEVLN----GKADMFIFDLPFNVAFMAQKGQGYLVHLDTSLTYEPLGWAIKKGD 199 (245)
T ss_dssp HHHHHHHHC--SSSEEEEESSHHHHHHHHHS----SSSEEEEEEHHHHHHHHHHTTTTTEEEECCCCSCEEECCEECTTC
T ss_pred HHHHHHhhC--CcCCEEEeCCHHHHHHHHHc----CCCcEEEEcHHHHHHHHhcCCccceeecCCCcccccEEEEEcCCC
Confidence 888886543 45678889999999999999 999999999998888877653 6888888888888999999999
Q ss_pred c-chHHHHHHHHhhhhccchHHHHHHhcccC
Q 002364 781 P-LAVDLSSAILELAENGDLQRIHDKWLMKS 810 (930)
Q Consensus 781 p-l~~~i~~~i~~l~e~G~~~~~~~~w~~~~ 810 (930)
| +++.||++|.++.++|.+++|.++|+...
T Consensus 200 ~~l~~~ln~~l~~l~~~g~~~~i~~k~~~~~ 230 (245)
T 3k4u_A 200 PDFLNWLNHFLAQIKHDGSYDELYERWFVDT 230 (245)
T ss_dssp HHHHHHHHHHHHHHHHHSHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHhcCcc
Confidence 9 99999999999999999999999999943
No 49
>1mqi_A Glutamate receptor 2; GLUR2, ligand binding core, S1S2, partial agonist, WILLARDIINES, fluoro-WILLARDIINE, membrane protein; HET: FWD; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1ftj_A* 1ftl_A* 1fto_A 1fw0_A* 1m5b_A* 1ftm_A* 1m5c_A* 1mm6_A* 1mm7_A* 1mqg_A* 1m5e_A* 1mqj_A* 1ms7_A* 1mxu_A* 1mxv_A 1mxw_A 1mxx_A 1mxy_A 1mxz_A 1my0_A ...
Probab=99.88 E-value=3.8e-22 Score=210.31 Aligned_cols=231 Identities=23% Similarity=0.448 Sum_probs=187.2
Q ss_pred CceeEEEecCCccccceeeeccC------CcceEeeeHHHHHHHHHhCCCcccEEEEe---cCCCCCCC-CHHHHHHHHH
Q 002364 464 GKLLKIGVPNRASYREFVSKVRG------SDMFQGFCIDVFTAAVNLLPYAVPYQFVA---FGDGHKNP-SYTQLVDSIT 533 (930)
Q Consensus 464 g~~lrv~~~~~~~~~p~~~~~~~------~~~~~G~~~dl~~~l~~~l~f~~~~~~~~---~~~~~~~~-~~~~~~~~l~ 533 (930)
+++|+|++. +|+||.+.+.. ++++.|+++||++++++++|+++++...+ +|....++ +|++++.+|.
T Consensus 3 ~~~l~v~~~---~~pP~~~~~~~~~~~~~~g~~~G~~~dl~~~ia~~lg~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~ 79 (263)
T 1mqi_A 3 NKTVVVTTI---LESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELV 79 (263)
T ss_dssp CCCEEEEEC---CBTTTBEECTTGGGCCGGGGEESHHHHHHHHHHHHHTCCEEEEECTTCCCCCBCTTTCCBCHHHHHHH
T ss_pred CeEEEEEEe---cCCCcEEEecCcccccCCCceeeeHHHHHHHHHHHcCceEEEEEccccccCccCCCCCCcHHHHHHHH
Confidence 578999998 57888887642 48899999999999999999776555542 22222333 7999999999
Q ss_pred cCcccEEEeeeeeecCceeeeeecccccccceEEEEeccCCCCCcceeeccCchhHHHHHHHHHHHHHHHhhhhhcccCC
Q 002364 534 TGVFDAVVGDITIVTNRTKIVDFSQPYAASGLVVVVPFRKLNTGAWAFLRPFSPLMWTVTACFFVVVGIVVWILEHRIND 613 (930)
Q Consensus 534 ~g~~D~~~~~~~~t~~r~~~vdft~p~~~~~~~~lv~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~~~~~~~~~~~~ 613 (930)
+|++|+++++++++++|.+.++||.||+..+.++++++..
T Consensus 80 ~g~~D~~~~~~~~t~~R~~~~~fs~p~~~~~~~~~~~~~~---------------------------------------- 119 (263)
T 1mqi_A 80 YGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGT---------------------------------------- 119 (263)
T ss_dssp TTSCSEECSSCBCCHHHHTTEEECSCSEEECEEEEEETTC----------------------------------------
T ss_pred cCCcCEEEEeeEecHHHHhhcccccceecccEEEEEcCcc----------------------------------------
Confidence 9999999988999999999999999999999999998754
Q ss_pred CCCCCccccchhhhHHHHHHhhhcCcCcccccchhhhHHHHHHHHHhhhhhhhhhhheeeecccccCCCCChHHhhhCCC
Q 002364 614 EFRGPPKRQVITILWFSLSTLFFAHKENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLYSPINGIESLRKSDD 693 (930)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~s~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~ 693 (930)
++++++||. |+
T Consensus 120 -------------------------------------------------------------------~i~~~~dL~--g~ 130 (263)
T 1mqi_A 120 -------------------------------------------------------------------PIESAEDLS--KQ 130 (263)
T ss_dssp -------------------------------------------------------------------SCCSHHHHH--TC
T ss_pred -------------------------------------------------------------------ccCCHHHHh--cc
Confidence 578999998 66
Q ss_pred C---eEEE-eCchHHHHHHHhhccc-----------cccceecCCHHHHHHHH--hcCCCCCceEEEEecchhHHHHHhc
Q 002364 694 P---IGYQ-EGSFAEYYLSQELNIS-----------KSRLVALRTPEDYAKAL--KDGPGKGGVAAVVDERPYVELFLSS 756 (930)
Q Consensus 694 ~---v~~~-~~s~~~~~l~~~~~~~-----------~~~~~~~~~~~~~~~~l--~~~~~~g~~~a~i~~~~~~~~~~~~ 756 (930)
+ +|.. .++. ..++.+. ... ..+++.+.+.++++++| .+ |+ ++++.+...+.|+..+
T Consensus 131 ~~~~ig~v~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----g~-da~~~~~~~~~~~~~~ 203 (263)
T 1mqi_A 131 TEIAYGTLDSGST-KEFFRRS-KIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSK----GK-YAYLLESTMNEYIEQR 203 (263)
T ss_dssp SSSEEECBSSSHH-HHHHHHC-CSHHHHHHHHHHHHCSSCCCBSSHHHHHHHHHHTT----TS-EEEEEEHHHHHHHTTS
T ss_pred cCeeEEEEeccHH-HHHHHhc-cchhHHHHHHHHhhCCCceecCCHHHHHHHHhhcC----Cc-EEEEechHHHHHHHhc
Confidence 6 4644 4554 4444321 111 12466788999999999 77 78 7999998888888776
Q ss_pred C-ccEEEeCccccccceeeeeCCCCcchHHHHHHHHhhhhccchHHHHHHhcc-cCCCC
Q 002364 757 Q-CSFRIVGQEFTKSGWGFAFPRDSPLAVDLSSAILELAENGDLQRIHDKWLM-KSSCS 813 (930)
Q Consensus 757 ~-~~l~~~~~~~~~~~~~~~~~k~spl~~~i~~~i~~l~e~G~~~~~~~~w~~-~~~c~ 813 (930)
. +++.+++..+...+++++++|+++|++.||++|.+|.++|.+++|.++|+. ...|+
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~in~~l~~l~~~g~~~~i~~k~~~~~~~C~ 262 (263)
T 1mqi_A 204 KPCDTMKVGGNLDSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWWYDKGECG 262 (263)
T ss_dssp TTCCEEEESCCSCCEEECCEEETTCTTHHHHHHHHHHHHHTTHHHHHHHHHHTTTCSCC
T ss_pred CCCceEEcCCcccccceEEEEeCCCccHHHHHHHHHHHHhcccHHHHHHHHcCCCCCCC
Confidence 5 578888877777889999999999999999999999999999999999998 67775
No 50
>3i6v_A Periplasmic His/Glu/Gln/Arg/opine family-binding; structural genomics, transporter, PSI-2, protein structure initiative; HET: LYS; 2.00A {Silicibacter pomeroyi} SCOP: c.94.1.0
Probab=99.88 E-value=2.4e-22 Score=207.49 Aligned_cols=220 Identities=18% Similarity=0.356 Sum_probs=187.4
Q ss_pred CceeEEEecCCccccceeeeccCCcceEeeeHHHHHHHHHhCCCcccEEEEecCCCCCCCCHHHHHHHHHcCcccEEEee
Q 002364 464 GKLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGD 543 (930)
Q Consensus 464 g~~lrv~~~~~~~~~p~~~~~~~~~~~~G~~~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~D~~~~~ 543 (930)
.++|||++.. .|+||.+.+. ++++.|+++||++++++++|+++++... +|.+++.+|.+|++|+++++
T Consensus 4 a~~l~v~~~~--~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~g~~~~~~~~---------~~~~~~~~l~~g~~D~~~~~ 71 (232)
T 3i6v_A 4 ADTVRMGTEG--AYPPYNFIND-AGEVDGFERELGDELCKRAGLTCEWVKN---------DWDSIIPNLVSGNYDTIIAG 71 (232)
T ss_dssp --CEEEEECS--EETTTEEECT-TSCEESHHHHHHHHHHHHHTCCEEEEEC---------CGGGHHHHHHTTSCSEECSS
T ss_pred CCEEEEEECC--CCCCeeEECC-CCCEeeehHHHHHHHHHHcCCceEEEEC---------CHHHHHHHHHCCCCCEEEeC
Confidence 5789999985 7899999865 7899999999999999999977555443 49999999999999999889
Q ss_pred eeeecCceeeeeecccccccceEEEEeccCCCCCcceeeccCchhHHHHHHHHHHHHHHHhhhhhcccCCCCCCCccccc
Q 002364 544 ITIVTNRTKIVDFSQPYAASGLVVVVPFRKLNTGAWAFLRPFSPLMWTVTACFFVVVGIVVWILEHRINDEFRGPPKRQV 623 (930)
Q Consensus 544 ~~~t~~r~~~vdft~p~~~~~~~~lv~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 623 (930)
+..+++|.+.++||.||+....++++++..
T Consensus 72 ~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~-------------------------------------------------- 101 (232)
T 3i6v_A 72 MSITDERDEVIDFTQNYIPPTASSYVATSD-------------------------------------------------- 101 (232)
T ss_dssp CBCCHHHHTTSEEEEEEECCCEEEEEESST--------------------------------------------------
T ss_pred CcCCHHHHhhcCcccccccCCeEEEEECCC--------------------------------------------------
Confidence 999999999999999999999999987543
Q ss_pred hhhhHHHHHHhhhcCcCcccccchhhhHHHHHHHHHhhhhhhhhhhheeeecccccCCCCChHHhhhCCCCeEEEeCchH
Q 002364 624 ITILWFSLSTLFFAHKENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLYSPINGIESLRKSDDPIGYQEGSFA 703 (930)
Q Consensus 624 ~~~~~~~~~~l~~~~~~~~~s~s~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~~v~~~~~s~~ 703 (930)
++||. | ++|+..|+..
T Consensus 102 -------------------------------------------------------------~~dL~--g-~igv~~g~~~ 117 (232)
T 3i6v_A 102 -------------------------------------------------------------GADLS--G-IVAAQTATIQ 117 (232)
T ss_dssp -------------------------------------------------------------TCCTT--S-EEEEETTSHH
T ss_pred -------------------------------------------------------------hHHhC--C-CEEEecCchH
Confidence 35665 7 8999999998
Q ss_pred HHHHHHhhccccccceecCCHHHHHHHHhcCCCCCceEEEEecchhHHHHHhcC-ccEEEeCc-cccccceeeeeCCCCc
Q 002364 704 EYYLSQELNISKSRLVALRTPEDYAKALKDGPGKGGVAAVVDERPYVELFLSSQ-CSFRIVGQ-EFTKSGWGFAFPRDSP 781 (930)
Q Consensus 704 ~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~i~~~~~~~~~~~~~-~~l~~~~~-~~~~~~~~~~~~k~sp 781 (930)
..++.+. ..+++.+.+.++++++|.+ |++|+++.+...+.+++.+. .++.+++. .+...+++++++|++|
T Consensus 118 ~~~l~~~----~~~~~~~~~~~~~~~~L~~----GrvDa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 189 (232)
T 3i6v_A 118 AGYIAES----GATLVEFATPEETIAAVRN----GEADAVFADRDYLVPIVAESGGELMFVGDDVPLGGGVGMGLRESDG 189 (232)
T ss_dssp HHHHHHS----SSEEEEESSHHHHHHHHHT----TSSSEEEEEHHHHHHHHHHTTTSSEEEEEEEECSSCEEEEECTTCH
T ss_pred HHHHHhc----CCeEEEeCCHHHHHHHHHc----CCcCEEEEChHHHHHHHHhCCCCeEEecCCCCCCCcEEEEEeCCCH
Confidence 8888553 3577888999999999999 99999999999999988876 56777765 4566789999999988
Q ss_pred -chHHHHHHHHhhhhccchHHHHHHhcccCCCCCccc
Q 002364 782 -LAVDLSSAILELAENGDLQRIHDKWLMKSSCSLENA 817 (930)
Q Consensus 782 -l~~~i~~~i~~l~e~G~~~~~~~~w~~~~~c~~~~~ 817 (930)
+++.||++|.++.++|.+++|.+||++...|.....
T Consensus 190 ~l~~~ln~~l~~l~~~G~~~~i~~k~~~~~~~~~~~~ 226 (232)
T 3i6v_A 190 ELRGKFDAAITSMKEDGTLNTMIKKWFGEDAAVYEEG 226 (232)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHHHHCTTSCCC---
T ss_pred HHHHHHHHHHHHHHHCChHHHHHHHHcCCCCCccccc
Confidence 999999999999999999999999999666655443
No 51
>3del_B Arginine binding protein; alpha and beta protein (A/B), periplasmic protein, arginine protein binding, transport protein; 1.92A {Chlamydia trachomatis} SCOP: c.94.1.0
Probab=99.87 E-value=1e-21 Score=204.13 Aligned_cols=223 Identities=19% Similarity=0.301 Sum_probs=194.0
Q ss_pred CCceeEEEecCCccccceeeeccCCcceEeeeHHHHHHHHHhCCCcccEEEEecCCCCCCCCHHHHHHHHHcCcccEEEe
Q 002364 463 NGKLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVG 542 (930)
Q Consensus 463 ~g~~lrv~~~~~~~~~p~~~~~~~~~~~~G~~~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~D~~~~ 542 (930)
..++|+|++.. .|+||.+.+. ++++.|+++||++++++++|+++ ++++ .+|.+++.+|.+|++|++++
T Consensus 9 ~~~~l~v~~~~--~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~g~~~--~~~~-------~~~~~~~~~l~~g~~D~~~~ 76 (242)
T 3del_B 9 NSEKFIVGTNA--TYPPFEFVDK-RGEVVGFDIDLAREISNKLGKTL--DVRE-------FSFDALILNLKQHRIDAVIT 76 (242)
T ss_dssp --CEEEEEECS--CBTTTBEECT-TSCEESHHHHHHHHHHHHHTCEE--EEEE-------CCGGGHHHHHHTTSSSEECS
T ss_pred cCCcEEEEeCC--CCCCeeEECC-CCCEEEeeHHHHHHHHHHcCCce--EEEE-------cCHHHHHHHHhCCCcCEEEe
Confidence 35689999965 7899998865 78999999999999999999664 4444 34999999999999999988
Q ss_pred eeeeecCceeeeeeccccc--ccceEEEEeccCCCCCcceeeccCchhHHHHHHHHHHHHHHHhhhhhcccCCCCCCCcc
Q 002364 543 DITIVTNRTKIVDFSQPYA--ASGLVVVVPFRKLNTGAWAFLRPFSPLMWTVTACFFVVVGIVVWILEHRINDEFRGPPK 620 (930)
Q Consensus 543 ~~~~t~~r~~~vdft~p~~--~~~~~~lv~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (930)
++..+++|.+.++| .||+ ....++++++..
T Consensus 77 ~~~~~~~r~~~~~~-~p~~~~~~~~~~~~~~~~----------------------------------------------- 108 (242)
T 3del_B 77 GMSITPSRLKEILM-IPYYGEEIKHLVLVFKGE----------------------------------------------- 108 (242)
T ss_dssp SBBCCHHHHTTEEE-EEEEEEEESEEEEEEESC-----------------------------------------------
T ss_pred cCcCCHHHHhcccc-eeeeecCCceEEEEeCCC-----------------------------------------------
Confidence 89999999999999 9999 888899888653
Q ss_pred ccchhhhHHHHHHhhhcCcCcccccchhhhHHHHHHHHHhhhhhhhhhhheeeecccccCCCCChHHhhhCCCCeEEEeC
Q 002364 621 RQVITILWFSLSTLFFAHKENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLYSPINGIESLRKSDDPIGYQEG 700 (930)
Q Consensus 621 ~~~~~~~~~~~~~l~~~~~~~~~s~s~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~~v~~~~~ 700 (930)
.+++++||. |++||+..|
T Consensus 109 ------------------------------------------------------------~i~~~~dL~--g~~i~v~~g 126 (242)
T 3del_B 109 ------------------------------------------------------------NKHPLPLTQ--YRSVAVQTG 126 (242)
T ss_dssp ------------------------------------------------------------CSCCCCGGG--SSCEEEETT
T ss_pred ------------------------------------------------------------CCCCHHHhC--CCEEEEEcC
Confidence 678899997 889999999
Q ss_pred chHHHHHHHhhccccccceecCCHHHHHHHHhcCCCCCceEEEEecchhHHHHHhcCccEEEeCccccccc----eeeee
Q 002364 701 SFAEYYLSQELNISKSRLVALRTPEDYAKALKDGPGKGGVAAVVDERPYVELFLSSQCSFRIVGQEFTKSG----WGFAF 776 (930)
Q Consensus 701 s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~i~~~~~~~~~~~~~~~l~~~~~~~~~~~----~~~~~ 776 (930)
+....++.+ .+..+++.+.+.++++++|.+ |++|+++.+...+.+++.+...+.+++..+...+ +++++
T Consensus 127 ~~~~~~l~~---~~~~~~~~~~~~~~~~~~L~~----g~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (242)
T 3del_B 127 TYQEAYLQS---LSEVHIRSFDSTLEVLMEVMH----GKSPVAVLEPSIAQVVLKDFPALSTATIDLPEDQWVLGYGIGV 199 (242)
T ss_dssp SHHHHHHHH---STTCCEEEESSHHHHHHHHHT----TSSSEEEECHHHHHHHGGGCTTEEEEEEECCGGGCEEEEEEEE
T ss_pred cHHHHHHHh---CCCceEEEECCHHHHHHHHHc----CCCCEEEecHHHHHHHHHhCCCeEEecCccCcccccceEEEEE
Confidence 998888855 355678889999999999999 9999999999999999988777888877666667 99999
Q ss_pred CCCCc-chHHHHHHHHhhhhccchHHHHHHhcccCCCCC
Q 002364 777 PRDSP-LAVDLSSAILELAENGDLQRIHDKWLMKSSCSL 814 (930)
Q Consensus 777 ~k~sp-l~~~i~~~i~~l~e~G~~~~~~~~w~~~~~c~~ 814 (930)
+|+++ +++.||++|.++.++|.+++|.+||+....+..
T Consensus 200 ~k~~~~l~~~l~~~l~~l~~~g~~~~i~~k~~~~~~~~~ 238 (242)
T 3del_B 200 ASDRPALALKIEAAVQEIRKEGVLAELEQKWGLNNLEHH 238 (242)
T ss_dssp ETTCHHHHHHHHHHHHHHHHTTHHHHHHHHTTGGGCSST
T ss_pred eCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHCCCCCccc
Confidence 99988 999999999999999999999999999544443
No 52
>3hv1_A Polar amino acid ABC uptake transporter substrate binding protein; protein structure initiative II(PSI II), nysgxrc; 1.90A {Streptococcus thermophilus lmg 18311}
Probab=99.87 E-value=1.3e-21 Score=206.88 Aligned_cols=225 Identities=18% Similarity=0.350 Sum_probs=195.0
Q ss_pred CCceeEEEecCCccccceeeeccCCcceEeeeHHHHHHHHHhCCCcccEEEEecCCCCCCCCHHHHHHHHHcCcccEEEe
Q 002364 463 NGKLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVG 542 (930)
Q Consensus 463 ~g~~lrv~~~~~~~~~p~~~~~~~~~~~~G~~~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~D~~~~ 542 (930)
..++||||+.. .|+||.+.+. ++.+.|+++||++.+++++|+++++ +. .+|.+++.+|.+|++|++++
T Consensus 19 ~~~~l~v~~~~--~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~g~~~~~--~~-------~~~~~~~~~l~~g~~D~~~~ 86 (268)
T 3hv1_A 19 KEKKIKIGFDA--TFVPMGYEEK-DGSYIGFDIDLANAVFKLYGIDVEW--QA-------IDWDMKETELKNGTIDLIWN 86 (268)
T ss_dssp HHTEEEEEECT--EETTTEEECT-TSCEECHHHHHHHHHHHTTTCEEEE--EE-------CCGGGHHHHHHHTSCSEECS
T ss_pred cCCcEEEEECC--CCCCceEECC-CCCEEEehHHHHHHHHHHhCCcEEE--EE-------CCHHHHHHHHHCCCCCEEEe
Confidence 45789999986 7899999875 7899999999999999999976554 44 24999999999999999988
Q ss_pred eeeeecCceeeeeecccccccceEEEEeccCCCCCcceeeccCchhHHHHHHHHHHHHHHHhhhhhcccCCCCCCCcccc
Q 002364 543 DITIVTNRTKIVDFSQPYAASGLVVVVPFRKLNTGAWAFLRPFSPLMWTVTACFFVVVGIVVWILEHRINDEFRGPPKRQ 622 (930)
Q Consensus 543 ~~~~t~~r~~~vdft~p~~~~~~~~lv~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 622 (930)
++..+.+|.+.+.||.||.....++++++..
T Consensus 87 ~~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~------------------------------------------------- 117 (268)
T 3hv1_A 87 GYSVTDERKQSADFTEPYMVNEQVLVTKKSS------------------------------------------------- 117 (268)
T ss_dssp SCBCCHHHHTTCEECCCCEEECEEEEEEGGG-------------------------------------------------
T ss_pred cCccCHHHHhcCcCcHHHeeCceEEEEECCC-------------------------------------------------
Confidence 8999999999999999999999999998654
Q ss_pred chhhhHHHHHHhhhcCcCcccccchhhhHHHHHHHHHhhhhhhhhhhheeeecccccCCCCChHHhhhCCCCeEEEeCch
Q 002364 623 VITILWFSLSTLFFAHKENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLYSPINGIESLRKSDDPIGYQEGSF 702 (930)
Q Consensus 623 ~~~~~~~~~~~l~~~~~~~~~s~s~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~~v~~~~~s~ 702 (930)
.|++++||. |++||+..|+.
T Consensus 118 ----------------------------------------------------------~i~~~~dL~--g~~i~v~~g~~ 137 (268)
T 3hv1_A 118 ----------------------------------------------------------GIDSVAGMA--GKTLGAQAGSS 137 (268)
T ss_dssp ----------------------------------------------------------CCCSSGGGT--TCCEEEETTCH
T ss_pred ----------------------------------------------------------CCCCHHHhC--CCEEEEEeCCc
Confidence 678999997 89999999998
Q ss_pred HHHHHHHhhc-----cccccceecCCHHHHHHHHhcCCCCCceEEEEecchhHHHHHhcC---ccEEEeCccccccceee
Q 002364 703 AEYYLSQELN-----ISKSRLVALRTPEDYAKALKDGPGKGGVAAVVDERPYVELFLSSQ---CSFRIVGQEFTKSGWGF 774 (930)
Q Consensus 703 ~~~~l~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~i~~~~~~~~~~~~~---~~l~~~~~~~~~~~~~~ 774 (930)
...++.+... .+..+++.+.+.++++++|.+ |++|+++.+...+.+++.+. +++.+++..+...++++
T Consensus 138 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~----GrvDa~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 213 (268)
T 3hv1_A 138 GYDAFNASPKILKDVVANQKVVQYSTFTQALIDLNS----GRIDGLLIDRVYANYYLEKSGVLDQYNVMPAGYEGESFAV 213 (268)
T ss_dssp HHHHHHHCTTTTTTTSGGGCEEEESSHHHHHHHHHH----TSCSEEEEEHHHHHHHHHHTTCGGGEEEEECSSCCEEECC
T ss_pred hHHHHHHhhHHHhhhcccceEEEeCCHHHHHHHHHc----CCCCEEEeCHHHHHHHHHhCCCCCceEECCCCCCCCcEEE
Confidence 8888754321 223567788999999999999 99999999999999988775 46888887777888999
Q ss_pred eeCCCCc-chHHHHHHHHhhhhccchHHHHHHhcccCCC
Q 002364 775 AFPRDSP-LAVDLSSAILELAENGDLQRIHDKWLMKSSC 812 (930)
Q Consensus 775 ~~~k~sp-l~~~i~~~i~~l~e~G~~~~~~~~w~~~~~c 812 (930)
+++|+++ +++.||++|.++.++|.+++|.++|+.....
T Consensus 214 ~~~k~~~~l~~~ln~~l~~l~~~g~~~~i~~k~~~~~~~ 252 (268)
T 3hv1_A 214 GARKVDKTLIKKINQGFETLYKNGEFQKISNKWFGEDVA 252 (268)
T ss_dssp EECTTCHHHHHHHHHHHHHHHHHTHHHHHHHHHHSSCCC
T ss_pred EEcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHhcCCCCC
Confidence 9999998 9999999999999999999999999984433
No 53
>3kbr_A Cyclohexadienyl dehydratase; pseudomonas aeruginos structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Pseudomonas aeruginosa}
Probab=99.87 E-value=6.9e-22 Score=205.02 Aligned_cols=222 Identities=17% Similarity=0.271 Sum_probs=192.1
Q ss_pred CCceeEEEecCCccccceeeeccCCcceEeeeHHHHHHHHHhCCCcccEEEEecCCCCCCCCHHHHHHHHHcCcccEEEe
Q 002364 463 NGKLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVG 542 (930)
Q Consensus 463 ~g~~lrv~~~~~~~~~p~~~~~~~~~~~~G~~~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~D~~~~ 542 (930)
..++|||++.. +|+||.+.+. ++++.|+++||++++++++|+++++ ++ .+|..++.+|.+|++|++++
T Consensus 13 ~~~~l~v~~~~--~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~g~~~~~--~~-------~~~~~~~~~l~~g~~D~~~~ 80 (239)
T 3kbr_A 13 ESGVLRVATTG--DYKPFSYRTE-EGGYAGFDVDMAQRLAESLGAKLVV--VP-------TSWPNLMRDFADDRFDIAMS 80 (239)
T ss_dssp HHTEEEEEECS--EETTTEEECT-TSCEESHHHHHHHHHHHHTTCEEEE--EE-------CCTTTHHHHHHTTCCSEECS
T ss_pred hCCeEEEEECC--CCCCeeEECC-CCCEEeehHHHHHHHHHHHCCceEE--EE-------eCHHHHHHHHHCCCcCEEEe
Confidence 35789999975 7899999875 7899999999999999999976554 44 34999999999999999988
Q ss_pred eeeeecCceeeeeecccccccceEEEEeccCCCCCcceeeccCchhHHHHHHHHHHHHHHHhhhhhcccCCCCCCCcccc
Q 002364 543 DITIVTNRTKIVDFSQPYAASGLVVVVPFRKLNTGAWAFLRPFSPLMWTVTACFFVVVGIVVWILEHRINDEFRGPPKRQ 622 (930)
Q Consensus 543 ~~~~t~~r~~~vdft~p~~~~~~~~lv~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 622 (930)
++..+++|.+.++||.||+..+.++++++...
T Consensus 81 ~~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~~------------------------------------------------ 112 (239)
T 3kbr_A 81 GISINLERQRQAYFSIPYLRDGKTPITLCSEE------------------------------------------------ 112 (239)
T ss_dssp SCBCCHHHHTTCEECSCSEEECEEEEEEGGGG------------------------------------------------
T ss_pred CCcCCHHHcCccccchHHhccCcEEEEECCcc------------------------------------------------
Confidence 89999999999999999999999999987651
Q ss_pred chhhhHHHHHHhhhcCcCcccccchhhhHHHHHHHHHhhhhhhhhhhheeeecccccCCCCChHHhhhCCCCeEEEeCch
Q 002364 623 VITILWFSLSTLFFAHKENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLYSPINGIESLRKSDDPIGYQEGSF 702 (930)
Q Consensus 623 ~~~~~~~~~~~l~~~~~~~~~s~s~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~~v~~~~~s~ 702 (930)
..+++++||...++++|+..|+.
T Consensus 113 ---------------------------------------------------------~~i~~~~dL~~~g~~v~~~~g~~ 135 (239)
T 3kbr_A 113 ---------------------------------------------------------ARFQTLEQIDQPGVTAIVNPGGT 135 (239)
T ss_dssp ---------------------------------------------------------GGGSSHHHHSSTTCEEEECTTSH
T ss_pred ---------------------------------------------------------cccCCHHHhcCCCcEEEEcCCCc
Confidence 46889999986678899999998
Q ss_pred HHHHHHHhhccccccceecCCHHHHHHHHhcCCCCCceEEEEecchhHHHHHhcCccEEEeC--ccccccceeeeeCCCC
Q 002364 703 AEYYLSQELNISKSRLVALRTPEDYAKALKDGPGKGGVAAVVDERPYVELFLSSQCSFRIVG--QEFTKSGWGFAFPRDS 780 (930)
Q Consensus 703 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~i~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~k~s 780 (930)
...++.+.. +..++..+++.++++++|.+ |++|+++.+...+.+++.+..++.++. ..+...+++++++| +
T Consensus 136 ~~~~l~~~~--~~~~~~~~~~~~~~~~~l~~----grvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k-~ 208 (239)
T 3kbr_A 136 NEKFARANL--KKARILVHPDNVTIFQQIVD----GKADLMMTDAIEARLQSRLHPELCAVHPQQPFDFAEKAYLLPR-D 208 (239)
T ss_dssp HHHHHHHHC--SSSEEEECCCTTTHHHHHHT----TSCSEEEEEHHHHHHHHHHCTTEEECCCC-CCCCEEECCEECS-C
T ss_pred HHHHHHHhC--CCCceEEeCCHHHHHHHHHc----CCcCEEEEchHHHHHHHHhCCCcEEecCCCCccccceEEEEcC-C
Confidence 888886543 45678888999999999999 999999999999999988877776664 34667789999999 6
Q ss_pred c-chHHHHHHHHhhhhccchHHHHHHhcc
Q 002364 781 P-LAVDLSSAILELAENGDLQRIHDKWLM 808 (930)
Q Consensus 781 p-l~~~i~~~i~~l~e~G~~~~~~~~w~~ 808 (930)
+ +++.||++|.+|.++|.+++|.++|++
T Consensus 209 ~~l~~~ln~~l~~l~~~g~~~~i~~k~~~ 237 (239)
T 3kbr_A 209 EAFKRYVDQWLHIAEQSGLLRQRMEHWLE 237 (239)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHCCcHHHHHHHHhc
Confidence 5 999999999999999999999999986
No 54
>3tql_A Arginine-binding protein; transport and binding proteins, transport protein; HET: MSE ARG; 1.59A {Coxiella burnetii} SCOP: c.94.1.0
Probab=99.86 E-value=3e-21 Score=198.21 Aligned_cols=218 Identities=24% Similarity=0.411 Sum_probs=185.6
Q ss_pred ceeEEEecCCccccceeeeccCCcceEeeeHHHHHHHHHhCCCcccEEEEecCCCCCCCCHHHHHHHHHcCcccEEEeee
Q 002364 465 KLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGDI 544 (930)
Q Consensus 465 ~~lrv~~~~~~~~~p~~~~~~~~~~~~G~~~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~D~~~~~~ 544 (930)
++|||++.. +|+||.+.+. ++++.|+++|+++++++++|+++++.. .+|.+++.++.+|++|++++++
T Consensus 2 ~~l~v~~~~--~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~g~~~~~~~---------~~~~~~~~~l~~g~~D~~~~~~ 69 (227)
T 3tql_A 2 DTIKFATEA--TYPPYVYMGP-SGQVEGFGADIVKAVCKQMQAVCTISN---------QPWDSLIPSLKLGKFDALFGGM 69 (227)
T ss_dssp CEEEEEECS--CBTTTBEEC---CCEESHHHHHHHHHHHHTTCEEEEEE---------CCHHHHHHHHHHTSCSEECSSC
T ss_pred ceEEEEEcC--CCCCeeEECC-CCCcccchHHHHHHHHHHhCCeEEEEe---------CCHHHHHHHHhCCCCCEEEecC
Confidence 579999985 7899998765 788999999999999999997755544 3499999999999999998889
Q ss_pred eeecCceeeeeecccccccceEEEEeccCCCCCcceeeccCchhHHHHHHHHHHHHHHHhhhhhcccCCCCCCCccccch
Q 002364 545 TIVTNRTKIVDFSQPYAASGLVVVVPFRKLNTGAWAFLRPFSPLMWTVTACFFVVVGIVVWILEHRINDEFRGPPKRQVI 624 (930)
Q Consensus 545 ~~t~~r~~~vdft~p~~~~~~~~lv~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (930)
..+++|.+.+.||.||.....++++++..
T Consensus 70 ~~~~~r~~~~~~s~p~~~~~~~l~~~~~~--------------------------------------------------- 98 (227)
T 3tql_A 70 NITTARQKEVDFTDPYYTNSVSFIADKNT--------------------------------------------------- 98 (227)
T ss_dssp BCCTTGGGTEEECSCSBCCEEEEEEETTS---------------------------------------------------
T ss_pred cCCHhHHhheecccceeccceEEEEeCCC---------------------------------------------------
Confidence 99999999999999999999999998776
Q ss_pred hhhHHHHHHhhhcCcCcccccchhhhHHHHHHHHHhhhhhhhhhhheeeecccccCCCCChHHhhhCCCCeEEEeCchHH
Q 002364 625 TILWFSLSTLFFAHKENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLYSPINGIESLRKSDDPIGYQEGSFAE 704 (930)
Q Consensus 625 ~~~~~~~~~l~~~~~~~~~s~s~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~~v~~~~~s~~~ 704 (930)
+.+++++||. |+++|+..|+...
T Consensus 99 -------------------------------------------------------~~~~~~~dL~--g~~v~~~~g~~~~ 121 (227)
T 3tql_A 99 -------------------------------------------------------PLTLSKQGLK--GKIIGVQGGTTFD 121 (227)
T ss_dssp -------------------------------------------------------CCCCSTTTTT--TCEEEEETTSHHH
T ss_pred -------------------------------------------------------CCCCCHHHhC--CCEEEEEecccHH
Confidence 3347889996 8899999999988
Q ss_pred HHHHHhhccccccceecCCHHHHHHHHhcCCCCCceEEEEecchhHHHHHhcCc--cEEEeCccccc-----cceeeeeC
Q 002364 705 YYLSQELNISKSRLVALRTPEDYAKALKDGPGKGGVAAVVDERPYVELFLSSQC--SFRIVGQEFTK-----SGWGFAFP 777 (930)
Q Consensus 705 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~i~~~~~~~~~~~~~~--~l~~~~~~~~~-----~~~~~~~~ 777 (930)
.++.+.... ..++..+.+.++++++|.+ |++|+++.+...+.+++.+.. ++.+++..+.. .+++++++
T Consensus 122 ~~l~~~~~~-~~~~~~~~~~~~~~~~l~~----grvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (227)
T 3tql_A 122 SYLQDSFGN-SITIQRYPSEEDALMDLTS----GRVDAVVGDTPLIKQWLKQNGRREYVLIGKPVNDPNYFGKGVGIAVK 196 (227)
T ss_dssp HHHHHHHGG-GSEEEEESSHHHHHHHHTT----TSSSEEESCHHHHHHHHHHTTCCSEEEEEEECCCGGGCCSCBCCEEE
T ss_pred HHHHHhccc-cceEEEcCCHHHHHHHHHc----CCcCEEEeChHHHHHHHHhCCCCCEEEecCcccCccccccceEEEEc
Confidence 888654421 1577788999999999999 999999999999998888765 37776544333 34589999
Q ss_pred CCCc-chHHHHHHHHhhhhccchHHHHHHhc
Q 002364 778 RDSP-LAVDLSSAILELAENGDLQRIHDKWL 807 (930)
Q Consensus 778 k~sp-l~~~i~~~i~~l~e~G~~~~~~~~w~ 807 (930)
|++| +++.||++|.++.++|.+++|.++|+
T Consensus 197 ~~~~~l~~~l~~~l~~l~~~g~~~~i~~k~~ 227 (227)
T 3tql_A 197 KGNQALLLKLNKALAAIKANGVYAAIVQKYF 227 (227)
T ss_dssp TTCHHHHHHHHHHHHHHHHTSHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHHHhCChHHHHHHhhC
Confidence 9998 99999999999999999999999996
No 55
>1ii5_A SLR1257 protein; membrane protein; HET: GLU; 1.60A {Synechocystis SP} SCOP: c.94.1.1 PDB: 1iit_A 1iiw_A
Probab=99.86 E-value=4.9e-21 Score=197.59 Aligned_cols=219 Identities=19% Similarity=0.346 Sum_probs=187.7
Q ss_pred CceeEEEecCCccccceeee--ccCCcceEeeeHHHHHHHHHhCCCcccEEEEecCCCCCCCCHHHHHHHHHcCcccEEE
Q 002364 464 GKLLKIGVPNRASYREFVSK--VRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVV 541 (930)
Q Consensus 464 g~~lrv~~~~~~~~~p~~~~--~~~~~~~~G~~~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~D~~~ 541 (930)
.++|+||+. +|+||.+. +. ++++.|+++|+++.+++++|+++++... .+|.+++.+|.+|++|+++
T Consensus 3 ~~~l~v~~~---~~~P~~~~~~~~-~g~~~G~~~dl~~~i~~~~g~~~~~~~~--------~~~~~~~~~l~~g~~D~~~ 70 (233)
T 1ii5_A 3 AMALKVGVV---GNPPFVFYGEGK-NAAFTGISLDVWRAVAESQKWNSEYVRQ--------NSISAGITAVAEGELDILI 70 (233)
T ss_dssp SCCEEEEEC---CCTTTCEEC------CEESHHHHHHHHHHHHHTCCEEEEEC--------SCHHHHHHHHHTTSCSEEE
T ss_pred CceEEEEec---CCCCeEEEecCC-CCCEEEEeHHHHHHHHHHcCCcEEEEEe--------CCHHHHHHHHHCCCcCEEE
Confidence 467999997 47899887 43 7889999999999999999976554443 2599999999999999999
Q ss_pred eeeeeecCce--eeeeecccccccceEEEEeccCCCCCcceeeccCchhHHHHHHHHHHHHHHHhhhhhcccCCCCCCCc
Q 002364 542 GDITIVTNRT--KIVDFSQPYAASGLVVVVPFRKLNTGAWAFLRPFSPLMWTVTACFFVVVGIVVWILEHRINDEFRGPP 619 (930)
Q Consensus 542 ~~~~~t~~r~--~~vdft~p~~~~~~~~lv~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 619 (930)
+++..+.+|. +.++||.||+....++++++...
T Consensus 71 ~~~~~~~~r~~~~~~~~s~p~~~~~~~~~~~~~~~--------------------------------------------- 105 (233)
T 1ii5_A 71 GPISVTPERAAIEGITFTQPYFSSGIGLLIPGTAT--------------------------------------------- 105 (233)
T ss_dssp EEEECCHHHHTSTTEEECCCCEEEEEEEEEEGGGT---------------------------------------------
T ss_pred eeeecCccccccceeEEccceeecCeEEEEECCCC---------------------------------------------
Confidence 8888999998 99999999999999999987761
Q ss_pred cccchhhhHHHHHHhhhcCcCcccccchhhhHHHHHHHHHhhhhhhhhhhheeeecccccCCCCChHHhhhCCCCeEEEe
Q 002364 620 KRQVITILWFSLSTLFFAHKENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLYSPINGIESLRKSDDPIGYQE 699 (930)
Q Consensus 620 ~~~~~~~~~~~~~~l~~~~~~~~~s~s~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~~v~~~~ 699 (930)
..+++++||. |+++|+..
T Consensus 106 ------------------------------------------------------------~~i~~~~dL~--g~~v~~~~ 123 (233)
T 1ii5_A 106 ------------------------------------------------------------PLFRSVGDLK--NKEVAVVR 123 (233)
T ss_dssp ------------------------------------------------------------TTCSSGGGGT--TCEEEEET
T ss_pred ------------------------------------------------------------CCCCCHHHhC--CCeEEEEC
Confidence 2788999997 88999999
Q ss_pred CchHHHHHHHhhccccccceecCCHHHHHHHHhcCCCCCceEEEEecchhHHHHHhcCc--cEEEeCccccccceeeeeC
Q 002364 700 GSFAEYYLSQELNISKSRLVALRTPEDYAKALKDGPGKGGVAAVVDERPYVELFLSSQC--SFRIVGQEFTKSGWGFAFP 777 (930)
Q Consensus 700 ~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~i~~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~~ 777 (930)
|+....++.+. ..+++.+.+.++++++|.+ |++|+++.+...+.+++.+.. ++.+++..+...+++++++
T Consensus 124 g~~~~~~l~~~----~~~~~~~~~~~~~~~~l~~----g~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (233)
T 1ii5_A 124 DTTAVDWANFY----QADVRETNNLTAAITLLQK----KQVEAVMFDRPALIYYTRQNPNLNLEVTEIRVSLEPYGFVLK 195 (233)
T ss_dssp TSHHHHHHHHT----TCEEEEESSHHHHHHHHHT----TSCSEEEEEHHHHHHHHHHCGGGCEEECSCCSEEEEEEEEEE
T ss_pred CccHHHHHHHc----CCCeEEcCCHHHHHHHHHc----CCccEEEeCHHHHHHHHHhCCCCcEEEeCccccccceEEEEc
Confidence 99888888543 3467778899999999999 999999999999998887764 6888887777778999999
Q ss_pred CCCcchHHHHHHHHhhhhccchHHHHHHhccc
Q 002364 778 RDSPLAVDLSSAILELAENGDLQRIHDKWLMK 809 (930)
Q Consensus 778 k~spl~~~i~~~i~~l~e~G~~~~~~~~w~~~ 809 (930)
|++++.+.+|++|.+|.++|.+++|.++|+..
T Consensus 196 k~~~l~~~~~~~l~~l~~~g~~~~i~~k~~~~ 227 (233)
T 1ii5_A 196 ENSPLQKTINVEMLNLLYSRVIAEFTERWLGP 227 (233)
T ss_dssp TTCTTHHHHHHHHHHHHHTTHHHHHHHHHHC-
T ss_pred CCchHHHHHHHHHHHHHhCCcHHHHHHHHcCC
Confidence 99999999999999999999999999999983
No 56
>4eq9_A ABC transporter substrate-binding protein-amino A transport; structural genomics, niaid; HET: GSH; 1.40A {Streptococcus pneumoniae}
Probab=99.86 E-value=3.7e-21 Score=200.39 Aligned_cols=227 Identities=15% Similarity=0.215 Sum_probs=191.0
Q ss_pred CCceeEEEecCCccccceeeeccCCcceEeeeHHHHHHHHHhCC-CcccEEEEecCCCCCCCCHHHHHHHHHcCcccEEE
Q 002364 463 NGKLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLP-YAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVV 541 (930)
Q Consensus 463 ~g~~lrv~~~~~~~~~p~~~~~~~~~~~~G~~~dl~~~l~~~l~-f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~D~~~ 541 (930)
..++|+|++.. .|+||.+. . ++++.|+++||++++++++| +++++... +|.+++.+|.+|++|+++
T Consensus 6 ~~~~l~v~~~~--~~~P~~~~-~-~g~~~G~~~dl~~~i~~~~g~~~~~~~~~---------~~~~~~~~l~~g~~D~~~ 72 (246)
T 4eq9_A 6 SKKEIIVATNG--SPRPFIYE-E-NGELTGYEIEVVRAIFKDSDKYDVKFEKT---------EWSGVFAGLDADRYNMAV 72 (246)
T ss_dssp -CEEEEEEECC--CSTTTSEE-E-TTEEESHHHHHHHHHHTTCSSEEEEEEEC---------CHHHHHHHHHTTSCSEEC
T ss_pred CCCEEEEEeCC--CcCCeEEc-C-CCCCcccHHHHHHHHHHHcCCceEEEEeC---------CHHHHHHHHhCCCcCEEe
Confidence 35689999986 78999984 3 78999999999999999999 88666544 499999999999999999
Q ss_pred eeeeeecCceeeeeecccccccceEEEEeccCCCCCcceeeccCchhHHHHHHHHHHHHHHHhhhhhcccCCCCCCCccc
Q 002364 542 GDITIVTNRTKIVDFSQPYAASGLVVVVPFRKLNTGAWAFLRPFSPLMWTVTACFFVVVGIVVWILEHRINDEFRGPPKR 621 (930)
Q Consensus 542 ~~~~~t~~r~~~vdft~p~~~~~~~~lv~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (930)
+++..+++|.+.+.||.||+....++++++..
T Consensus 73 ~~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~------------------------------------------------ 104 (246)
T 4eq9_A 73 NNLSYTKERAEKYLYAAPIAQNPNVLVVKKDD------------------------------------------------ 104 (246)
T ss_dssp SSCCCCHHHHHHEEECCCCEECCEEEEEETTC------------------------------------------------
T ss_pred cccccChhhhhceeeccceecCceEEEEECCC------------------------------------------------
Confidence 88899999999999999999999999998855
Q ss_pred cchhhhHHHHHHhhhcCcCcccccchhhhHHHHHHHHHhhhhhhhhhhheeeecccccCCCCChHHhhhCCCCeEEEeCc
Q 002364 622 QVITILWFSLSTLFFAHKENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLYSPINGIESLRKSDDPIGYQEGS 701 (930)
Q Consensus 622 ~~~~~~~~~~~~l~~~~~~~~~s~s~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~~v~~~~~s 701 (930)
.++++++||. |+++|+..|+
T Consensus 105 ----------------------------------------------------------~~i~~~~dL~--g~~i~~~~g~ 124 (246)
T 4eq9_A 105 ----------------------------------------------------------SSIKSLDDIG--GKSTEVVQAT 124 (246)
T ss_dssp ----------------------------------------------------------CSCSSGGGCT--TCEEEECTTC
T ss_pred ----------------------------------------------------------CCCCCHHHhC--CCEEEEecCc
Confidence 5789999997 8899999999
Q ss_pred hHHHHHHH---hhccccccce-ecCCHHHHHHHHhcCCCCCceEEEEecchhHHHHHhcCc--cEEEeCccccccc-eee
Q 002364 702 FAEYYLSQ---ELNISKSRLV-ALRTPEDYAKALKDGPGKGGVAAVVDERPYVELFLSSQC--SFRIVGQEFTKSG-WGF 774 (930)
Q Consensus 702 ~~~~~l~~---~~~~~~~~~~-~~~~~~~~~~~l~~~~~~g~~~a~i~~~~~~~~~~~~~~--~l~~~~~~~~~~~-~~~ 774 (930)
....++.+ .......++. ...+.++++++|.+ |++|+++.+...+.+++.+.. ++.++.......+ +++
T Consensus 125 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~----g~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (246)
T 4eq9_A 125 TSAKQLEAYNAEHTDNPTILNYTKADFQQIMVRLSD----GQFDYKIFDKIGVETVIKNQGLDNLKVIELPSDQQPYVYP 200 (246)
T ss_dssp HHHHHHHHHHHHCTTSCCEEEECCCCHHHHHHHHHT----TSSSEEEEEHHHHHHHHHHHTCTTEEEEECCCSSCCEECC
T ss_pred cHHHHHHHHHhhCCCcceEEEecCCCHHHHHHHHHc----CCceEEEecHHHHHHHHHhCCCCCceEecCcCCCCCcEEE
Confidence 88888755 2221112333 23588999999999 999999999999999887754 5888876665555 889
Q ss_pred eeCCCCc-chHHHHHHHHhhhhccchHHHHHHhcccCCCCC
Q 002364 775 AFPRDSP-LAVDLSSAILELAENGDLQRIHDKWLMKSSCSL 814 (930)
Q Consensus 775 ~~~k~sp-l~~~i~~~i~~l~e~G~~~~~~~~w~~~~~c~~ 814 (930)
+++|++| +++.||++|.++.++|.+++|.++|++...++.
T Consensus 201 ~~~k~~~~l~~~ln~~l~~l~~~g~~~~i~~k~~~~~~~p~ 241 (246)
T 4eq9_A 201 LLAQGQDELKSFVDKRIKELYKDGTLEKLSKQFFGDTYLPA 241 (246)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHSSCCCCC
T ss_pred EEcCCCHHHHHHHHHHHHHHHhCCcHHHHHHHhcCCCCCCC
Confidence 9999998 999999999999999999999999999554443
No 57
>3h7m_A Sensor protein; histidine kinase sensor domain, kinase, phosphoprotein, transferase; 2.40A {Geobacter sulfurreducens} SCOP: c.94.1.0
Probab=99.85 E-value=7e-21 Score=196.55 Aligned_cols=219 Identities=18% Similarity=0.330 Sum_probs=192.3
Q ss_pred CCceeEEEecCCccccceeeeccCCcceEeeeHHHHHHHHHhCCCcccEEEEecCCCCCCCCHHHHHHHHHcCcccEEEe
Q 002364 463 NGKLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVG 542 (930)
Q Consensus 463 ~g~~lrv~~~~~~~~~p~~~~~~~~~~~~G~~~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~D~~~~ 542 (930)
..++|+|++.. .|+||.+.+. ++.+.|+++||++++++++|+++++... +|..++.++.+|++|++ .
T Consensus 9 ~~~~l~v~~~~--~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~g~~~~~~~~---------~~~~~~~~l~~g~~D~~-~ 75 (234)
T 3h7m_A 9 RHRTIVVGGDR--DYPPYEFIDQ-NGKPAGYNVELTRAIAEVMGMTVEFRLG---------AWSEMFSALKSGRVDVL-Q 75 (234)
T ss_dssp SSSCEEEEEET--EETTTEEECT-TSCEESHHHHHHHHHHHHHTCCEEEEEE---------CGGGHHHHHHTTSSSEE-E
T ss_pred CCCEEEEEecC--CCCCeEEECC-CCCEeeeEHHHHHHHHHHcCCceEEEeC---------CHHHHHHHHhCCCeeEE-E
Confidence 46789999964 7899998865 7889999999999999999977666544 49999999999999995 6
Q ss_pred eeeeecCceeeeeecccccccceEEEEeccCCCCCcceeeccCchhHHHHHHHHHHHHHHHhhhhhcccCCCCCCCcccc
Q 002364 543 DITIVTNRTKIVDFSQPYAASGLVVVVPFRKLNTGAWAFLRPFSPLMWTVTACFFVVVGIVVWILEHRINDEFRGPPKRQ 622 (930)
Q Consensus 543 ~~~~t~~r~~~vdft~p~~~~~~~~lv~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 622 (930)
++..+.+|.+.+.||.||.....++++++..
T Consensus 76 ~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~------------------------------------------------- 106 (234)
T 3h7m_A 76 GISWSEKRARQIDFTPPHTIVYHAIFARRDS------------------------------------------------- 106 (234)
T ss_dssp EEECCHHHHTTEEEEEEEEEEEEEEEEESSS-------------------------------------------------
T ss_pred eccCCHhHHhhcCCCccccccceEEEEECCC-------------------------------------------------
Confidence 7889999999999999999999999998876
Q ss_pred chhhhHHHHHHhhhcCcCcccccchhhhHHHHHHHHHhhhhhhhhhhheeeecccccCCCCChHHhhhCCCCeEEEeCch
Q 002364 623 VITILWFSLSTLFFAHKENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLYSPINGIESLRKSDDPIGYQEGSF 702 (930)
Q Consensus 623 ~~~~~~~~~~~l~~~~~~~~~s~s~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~~v~~~~~s~ 702 (930)
+.+++++||. |+++|+..|+.
T Consensus 107 ---------------------------------------------------------~~~~~~~dL~--g~~i~~~~g~~ 127 (234)
T 3h7m_A 107 ---------------------------------------------------------PPAAGLEDLR--GRKVALHRDGI 127 (234)
T ss_dssp ---------------------------------------------------------CCCSSGGGGT--TSCEEEETTSH
T ss_pred ---------------------------------------------------------CCCCCHHHhC--CCEEEEEeCch
Confidence 4689999997 88999999998
Q ss_pred HHHHHHHhhccccccceecCCHHHHHHHHhcCCCCCceEEEEecchhHHHHHhcC--ccEEEeCccccccceeeeeCCCC
Q 002364 703 AEYYLSQELNISKSRLVALRTPEDYAKALKDGPGKGGVAAVVDERPYVELFLSSQ--CSFRIVGQEFTKSGWGFAFPRDS 780 (930)
Q Consensus 703 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~i~~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~~~k~s 780 (930)
...++.+.. +..+++.+.+.++++++|.+ |++|+++.+...+.+++.+. .++.++...+...+++++++|++
T Consensus 128 ~~~~l~~~~--~~~~~~~~~~~~~~~~~l~~----g~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (234)
T 3h7m_A 128 MHEYLAERG--YGKDLVLTPTPADALRLLAA----GGCDYAVVAMVPGMYIIRENRLTNLVPVARSIAAQRYGYAVRQGD 201 (234)
T ss_dssp HHHHHHTTT--CGGGEEEESSHHHHHHHHHT----TSSSEEEEEHHHHHHHHHHTTCTTEEEEEEEEEEEEEEEEEETTC
T ss_pred HHHHHHhcC--CCceEEEeCCHHHHHHHHHc----CCceEEEeccHHHHHHHHhcCCCceEEeccccCCCceEEEEeCCC
Confidence 888885432 34577888999999999999 99999999999988888764 36887777777888999999999
Q ss_pred c-chHHHHHHHHhhhhccchHHHHHHhcc
Q 002364 781 P-LAVDLSSAILELAENGDLQRIHDKWLM 808 (930)
Q Consensus 781 p-l~~~i~~~i~~l~e~G~~~~~~~~w~~ 808 (930)
| +++.||++|.+|.++|.+++|.++|++
T Consensus 202 ~~l~~~l~~~l~~l~~~g~~~~i~~k~~~ 230 (234)
T 3h7m_A 202 AELLARFSEGLAILRKTGQYEAIRAKWLG 230 (234)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHHHHcCcHHHHHHHhcc
Confidence 8 999999999999999999999999997
No 58
>1lst_A Lysine, arginine, ornithine-binding protein; amino-acid binding protein; HET: LYS; 1.80A {Salmonella typhimurium} SCOP: c.94.1.1 PDB: 2lao_A 1lag_E* 1lah_E 1laf_E 1hsl_A* 1hpb_P*
Probab=99.85 E-value=9.3e-21 Score=196.40 Aligned_cols=222 Identities=21% Similarity=0.348 Sum_probs=185.9
Q ss_pred CceeEEEecCCccccceeeeccCCcceEeeeHHHHHHHHHhCCCcccEEEEecCCCCCCCCHHHHHHHHHcCcccEEEee
Q 002364 464 GKLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGD 543 (930)
Q Consensus 464 g~~lrv~~~~~~~~~p~~~~~~~~~~~~G~~~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~D~~~~~ 543 (930)
.++|+|++.. +|+||.+.+. ++++.|+++|+++++++++|+++++. . .+|.+++.+|.+|++|+++++
T Consensus 3 ~~~l~v~~~~--~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~g~~~~~~--~-------~~~~~~~~~l~~g~~D~~~~~ 70 (239)
T 1lst_A 3 PQTVRIGTDT--TYAPFSSKDA-KGEFIGFDIDLGNEMCKRMQVKCTWV--A-------SDFDALIPSLKAKKIDAIISS 70 (239)
T ss_dssp CSEEEEEECS--CBTTTBEECT-TCCEESHHHHHHHHHHHHHTCEEEEE--E-------CCGGGHHHHHHTTSCSEECSS
T ss_pred cceEEEEECC--CcCCeeEECC-CCCEeeEHHHHHHHHHHHHCCeEEEE--e-------CCHHHHHHHHhCCCCCEEEEC
Confidence 4679999954 7899998765 78899999999999999999765544 4 359999999999999999888
Q ss_pred eeeecCceeeeeecccccccceEEEEeccCCCCCcceeeccCchhHHHHHHHHHHHHHHHhhhhhcccCCCCCCCccccc
Q 002364 544 ITIVTNRTKIVDFSQPYAASGLVVVVPFRKLNTGAWAFLRPFSPLMWTVTACFFVVVGIVVWILEHRINDEFRGPPKRQV 623 (930)
Q Consensus 544 ~~~t~~r~~~vdft~p~~~~~~~~lv~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 623 (930)
+..+++|.+.++||.||.....++++++..
T Consensus 71 ~~~t~~r~~~~~~s~p~~~~~~~l~~~~~~-------------------------------------------------- 100 (239)
T 1lst_A 71 LSITDKRQQEIAFSDKLYAADSRLIAAKGS-------------------------------------------------- 100 (239)
T ss_dssp CBCCHHHHHHCEECSCSBCCCEEEEEETTC--------------------------------------------------
T ss_pred cCcCHHHhhceeecccceeCceEEEEeCCC--------------------------------------------------
Confidence 899999999999999999999999998766
Q ss_pred hhhhHHHHHHhhhcCcCcccccchhhhHHHHHHHHHhhhhhhhhhhheeeecccccCCCCChHHhhhCCCCeEEEeCchH
Q 002364 624 ITILWFSLSTLFFAHKENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLYSPINGIESLRKSDDPIGYQEGSFA 703 (930)
Q Consensus 624 ~~~~~~~~~~l~~~~~~~~~s~s~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~~v~~~~~s~~ 703 (930)
+...+++||. |+++|+..|+..
T Consensus 101 --------------------------------------------------------~~~~~~~dL~--g~~v~~~~g~~~ 122 (239)
T 1lst_A 101 --------------------------------------------------------PIQPTLESLK--GKHVGVLQGSTQ 122 (239)
T ss_dssp --------------------------------------------------------CCCSSHHHHT--TCEEEEETTSHH
T ss_pred --------------------------------------------------------CCCCCHHHhC--CCEEEEEcCccH
Confidence 2225899997 888999999988
Q ss_pred HHHHHHhhccccccceecCCHHHHHHHHhcCCCCCceEEEEecchhHHH-HHhcC--ccEEEeCccccc-----cceeee
Q 002364 704 EYYLSQELNISKSRLVALRTPEDYAKALKDGPGKGGVAAVVDERPYVEL-FLSSQ--CSFRIVGQEFTK-----SGWGFA 775 (930)
Q Consensus 704 ~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~i~~~~~~~~-~~~~~--~~l~~~~~~~~~-----~~~~~~ 775 (930)
..++.+....+..++..+.+.++.+++|.+ |++|+++.+...+.+ ++.+. .++.+++..+.. .+++++
T Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~----G~vDa~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 198 (239)
T 1lst_A 123 EAYANDNWRTKGVDVVAYANQDLIYSDLTA----GRLDAALQDEVAASEGFLKQPAGKEYAFAGPSVKDKKYFGDGTGVG 198 (239)
T ss_dssp HHHHHHHTGGGTCEEEEESSHHHHHHHHHT----TSCSEEEEEHHHHHHHTTTSGGGTTEEECSSCBCCHHHHCSSBCCE
T ss_pred HHHHHHhcccCCCeEEEcCCHHHHHHHHHc----CCCCEEEeCcHHHHHHHHhccCCCceEEeccccccccccCcceEEE
Confidence 888865442233567788999999999999 999999999888754 44443 357777655433 368999
Q ss_pred eCCCCc-chHHHHHHHHhhhhccchHHHHHHhccc
Q 002364 776 FPRDSP-LAVDLSSAILELAENGDLQRIHDKWLMK 809 (930)
Q Consensus 776 ~~k~sp-l~~~i~~~i~~l~e~G~~~~~~~~w~~~ 809 (930)
++|++| +.+.+|++|.++.++|.+++|.++|+..
T Consensus 199 ~~k~~~~l~~~~~~~l~~l~~~G~~~~i~~k~~~~ 233 (239)
T 1lst_A 199 LRKDDTELKAAFDKALTELRQDGTYDKMAKKYFDF 233 (239)
T ss_dssp ECTTCHHHHHHHHHHHHHHHHTTHHHHHHHTTCSS
T ss_pred EeCCCHHHHHHHHHHHHHHHHCccHHHHHHHHcCC
Confidence 999998 9999999999999999999999999984
No 59
>3mpk_A Virulence sensor protein BVGS; venus flytrap, sensor domain, signaling protein; 2.04A {Bordetella pertussis} PDB: 3mpl_A
Probab=99.85 E-value=9.4e-21 Score=200.05 Aligned_cols=220 Identities=18% Similarity=0.264 Sum_probs=190.1
Q ss_pred CCceeEEEecCCccccceeeeccCCcceEeeeHHHHHHHHHhCCCcccEEEEecCCCCCCCCHHHHHHHHHcCcccEEEe
Q 002364 463 NGKLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVG 542 (930)
Q Consensus 463 ~g~~lrv~~~~~~~~~p~~~~~~~~~~~~G~~~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~D~~~~ 542 (930)
+.++||||+.. +|+||.+.+. ++++.|+++||++++++++|+++++... .+|.+++.+|.+|++|++.
T Consensus 30 ~~~~l~v~~~~--~~~P~~~~~~-~g~~~G~~~dl~~~i~~~lg~~~~~~~~--------~~~~~~~~~l~~G~~D~~~- 97 (267)
T 3mpk_A 30 DHPVVKVAVLN--LFAPFTLFRT-DEQFGGISAAVLQLLQLRTGLDFEIIGV--------DTVEELIAKLRSGEADMAG- 97 (267)
T ss_dssp HCSEEEEEEET--EETTTEECCT-TCCCBSHHHHHHHHHHHHHCCEEEEEEE--------SSHHHHHHHHHHTSCSEEE-
T ss_pred hCCcEEEEeCC--CCCCeEEECC-CCcEeeeHHHHHHHHHHHHCCeEEEEec--------CCHHHHHHHHHCCCccEEe-
Confidence 46789999975 7899999865 7889999999999999999976555433 4599999999999999975
Q ss_pred eeeeecCceeeeeecccccccceEEEEeccCCCCCcceeeccCchhHHHHHHHHHHHHHHHhhhhhcccCCCCCCCcccc
Q 002364 543 DITIVTNRTKIVDFSQPYAASGLVVVVPFRKLNTGAWAFLRPFSPLMWTVTACFFVVVGIVVWILEHRINDEFRGPPKRQ 622 (930)
Q Consensus 543 ~~~~t~~r~~~vdft~p~~~~~~~~lv~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 622 (930)
+++.+++|.+.+.||.||.....++++++..
T Consensus 98 ~~~~t~~r~~~~~fs~p~~~~~~~l~~~~~~------------------------------------------------- 128 (267)
T 3mpk_A 98 ALFVNSARESFLSFSRPYVRNGMVIVTRQDP------------------------------------------------- 128 (267)
T ss_dssp EEECCGGGTTTEEECSCSEEECEEEEEESST-------------------------------------------------
T ss_pred cccCChhhhcceEechhhccCceEEEEECCC-------------------------------------------------
Confidence 7899999999999999999999999998876
Q ss_pred chhhhHHHHHHhhhcCcCcccccchhhhHHHHHHHHHhhhhhhhhhhheeeecccccCCCCChHHhhhCCCCeEEEeCch
Q 002364 623 VITILWFSLSTLFFAHKENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLYSPINGIESLRKSDDPIGYQEGSF 702 (930)
Q Consensus 623 ~~~~~~~~~~~l~~~~~~~~~s~s~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~~v~~~~~s~ 702 (930)
+.+++++||. |++||+..|+.
T Consensus 129 ---------------------------------------------------------~~i~~~~dL~--g~~i~v~~g~~ 149 (267)
T 3mpk_A 129 ---------------------------------------------------------DAPVDADHLD--GRTVALVRNSA 149 (267)
T ss_dssp ---------------------------------------------------------TSCSSGGGCT--TCEEEEETTCT
T ss_pred ---------------------------------------------------------CCCCCHHHHC--CCEEEEeCCch
Confidence 5689999997 88999999999
Q ss_pred HHHHHHHhhccccccceecCCHHHHHHHHhcCCCCCceEEEEecchhHHHHHhc--CccEEEeCccc-cccceeeeeCCC
Q 002364 703 AEYYLSQELNISKSRLVALRTPEDYAKALKDGPGKGGVAAVVDERPYVELFLSS--QCSFRIVGQEF-TKSGWGFAFPRD 779 (930)
Q Consensus 703 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~i~~~~~~~~~~~~--~~~l~~~~~~~-~~~~~~~~~~k~ 779 (930)
...++.+.. +..+++.+.+.++++++|.+ |++|+++.+...+.|++.+ ..++.+.+... ...+++++++|+
T Consensus 150 ~~~~l~~~~--~~~~~~~~~~~~~~l~~L~~----GrvDa~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ 223 (267)
T 3mpk_A 150 AIPLLQRRY--PQAKVVTADNPSEAMLMVAN----GQADAVVQTQISASYYVNRYFAGKLRIASALDLPPAEIALATTRG 223 (267)
T ss_dssp HHHHHHHHC--TTSEEEEESSHHHHHHHHHH----TSCSEEEEEHHHHHHHHHHHCTTTEEEEEECSSCCEEEEEEEETT
T ss_pred hHHHHHHhC--CCcEEEEeCCHHHHHHHHHc----CCCCEEEecHHHHHHHHHhcCCCceEEEeccCCCceeEEEEEcCC
Confidence 988886543 45678889999999999999 9999999999999998887 34677776533 366789999999
Q ss_pred Cc-chHHHHHHHHhhhhccchHHHHHHhccc
Q 002364 780 SP-LAVDLSSAILELAENGDLQRIHDKWLMK 809 (930)
Q Consensus 780 sp-l~~~i~~~i~~l~e~G~~~~~~~~w~~~ 809 (930)
+| +++.||++|.++.++| +++|.++|+..
T Consensus 224 ~~~l~~~ln~~l~~l~~~~-~~~i~~kw~~~ 253 (267)
T 3mpk_A 224 QTELMSILNKALYSISNDE-LASIISRWRGS 253 (267)
T ss_dssp CHHHHHHHHHHHHTSCHHH-HHHHHHTTC--
T ss_pred CHHHHHHHHHHHHhCCHHH-HHHHHHhhccC
Confidence 98 9999999999999997 99999999984
No 60
>1wdn_A GLNBP, glutamine binding protein; closed form, complex, peptide, complex (binding protein/peptide); 1.94A {Escherichia coli} SCOP: c.94.1.1 PDB: 1ggg_A
Probab=99.84 E-value=1.7e-20 Score=192.37 Aligned_cols=217 Identities=24% Similarity=0.437 Sum_probs=188.9
Q ss_pred ceeEEEecCCccccceeeeccCCcceEeeeHHHHHHHHHhCCCcccEEEEecCCCCCCCCHHHHHHHHHcCcccEEEeee
Q 002364 465 KLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGDI 544 (930)
Q Consensus 465 ~~lrv~~~~~~~~~p~~~~~~~~~~~~G~~~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~D~~~~~~ 544 (930)
++|+|++.. +|+||.+.+ ++++.|+++|+++.+++++|+++++... +|.+++.++.+|++|++++++
T Consensus 3 ~~l~v~~~~--~~~P~~~~~--~g~~~G~~~dl~~~~~~~~g~~~~~~~~---------~~~~~~~~l~~g~~D~~~~~~ 69 (226)
T 1wdn_A 3 KKLVVATDT--AFVPFEFKQ--GDLYVGFDVDLWAAIAKELKLDYELKPM---------DFSGIIPALQTKNVDLALAGI 69 (226)
T ss_dssp -CEEEEEES--SBTTTBEEE--TTEEESHHHHHHHHHHHHHTCCEEEEEE---------CGGGHHHHHHTTSSSEEEEEE
T ss_pred ceEEEEECC--CCCCeeEec--CCcEEEeeHHHHHHHHHHhCCEEEEEEC---------CHHHHHHHHhCCCCCEEEEcC
Confidence 569999985 789998877 3789999999999999999977665544 399999999999999998888
Q ss_pred eeecCceeeeeecccccccceEEEEeccCCCCCcceeeccCchhHHHHHHHHHHHHHHHhhhhhcccCCCCCCCccccch
Q 002364 545 TIVTNRTKIVDFSQPYAASGLVVVVPFRKLNTGAWAFLRPFSPLMWTVTACFFVVVGIVVWILEHRINDEFRGPPKRQVI 624 (930)
Q Consensus 545 ~~t~~r~~~vdft~p~~~~~~~~lv~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (930)
..+++|.+.+.|+.||.....++++++..
T Consensus 70 ~~~~~r~~~~~~~~p~~~~~~~~~~~~~~--------------------------------------------------- 98 (226)
T 1wdn_A 70 TITDERKKAIDFSDGYYKSGLLVMVKANN--------------------------------------------------- 98 (226)
T ss_dssp ECCHHHHTTSEECSCCEEEEEEEEEETTC---------------------------------------------------
T ss_pred cCCHHHhCccccccchhcCceEEEEeCCC---------------------------------------------------
Confidence 88999999999999999999999998766
Q ss_pred hhhHHHHHHhhhcCcCcccccchhhhHHHHHHHHHhhhhhhhhhhheeeecccccCCCCChHHhhhCCCCeEEEeCchHH
Q 002364 625 TILWFSLSTLFFAHKENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLYSPINGIESLRKSDDPIGYQEGSFAE 704 (930)
Q Consensus 625 ~~~~~~~~~l~~~~~~~~~s~s~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~~v~~~~~s~~~ 704 (930)
+.+++++||. |+++++..|+...
T Consensus 99 -------------------------------------------------------~~i~~~~dL~--g~~i~~~~g~~~~ 121 (226)
T 1wdn_A 99 -------------------------------------------------------NDVKSVKDLD--GKVVAVKSGTGSV 121 (226)
T ss_dssp -------------------------------------------------------CSCSSSTTTT--TCEEEEETTSHHH
T ss_pred -------------------------------------------------------CCCCCHHHhC--CCEEEEEcCCcHH
Confidence 4688999997 8899999999888
Q ss_pred HHHHHhhccccccceecCCHHHHHHHHhcCCCCCceEEEEecchhHHHHHhcCc--cEEEeCccccccceeeeeCCCCc-
Q 002364 705 YYLSQELNISKSRLVALRTPEDYAKALKDGPGKGGVAAVVDERPYVELFLSSQC--SFRIVGQEFTKSGWGFAFPRDSP- 781 (930)
Q Consensus 705 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~i~~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~~k~sp- 781 (930)
.++.+.. +..++..+.+.++.+++|.+ |++|+++.+...+.+++.+.. ++.+++..+...+++++++|++|
T Consensus 122 ~~l~~~~--~~~~~~~~~~~~~~~~~l~~----g~vDa~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~k~~~~ 195 (226)
T 1wdn_A 122 DYAKANI--KTKDLRQFPNIDNAYMELGT----NRADAVLHDTPNILYFIKTAGNGQFKAVGDSLEAQQYGIAFPKGSDE 195 (226)
T ss_dssp HHHHHHC--CCSEEEEESSHHHHHHHHHT----TSCSEEEEEHHHHHHHHHTTTTTTEEEEEEEEEEEEEEEEECTTCHH
T ss_pred HHHHHhC--CCceEEEeCCHHHHHHHHHc----CCcCEEEeCcHHHHHHHHhCCCCceEEecCCcccCceEEEEeCCCHH
Confidence 8885542 34567778899999999999 999999999999988887753 68877766667789999999986
Q ss_pred chHHHHHHHHhhhhccchHHHHHHhcc
Q 002364 782 LAVDLSSAILELAENGDLQRIHDKWLM 808 (930)
Q Consensus 782 l~~~i~~~i~~l~e~G~~~~~~~~w~~ 808 (930)
+.+.+|++|.++.++|.+++|.++|+.
T Consensus 196 l~~~~~~~l~~l~~~g~~~~i~~k~~~ 222 (226)
T 1wdn_A 196 LRDKVNGALKTLRENGTYNEIYKKWFG 222 (226)
T ss_dssp HHHHHHHHHHHHHHTSHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhCChHHHHHHHHcC
Confidence 999999999999999999999999997
No 61
>4dz1_A DALS D-alanine transporter; D-alanine binding, periplasmic, transport protein; 1.90A {Salmonella enterica} PDB: 3r39_A 4f3s_A
Probab=99.84 E-value=2.5e-20 Score=195.85 Aligned_cols=223 Identities=20% Similarity=0.320 Sum_probs=190.2
Q ss_pred CCceeEEEecCCccccceeeeccCCcceEeeeHHHHHHHHHhCCCcccEEEEecCCCCCCCCHHHHHHHHHcCcccEEEe
Q 002364 463 NGKLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVG 542 (930)
Q Consensus 463 ~g~~lrv~~~~~~~~~p~~~~~~~~~~~~G~~~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~D~~~~ 542 (930)
..++|+|++.. .|+||.+.+. ++.+.|+++|+++++++++|++++ ++. .+|.+++.++.+|++|++++
T Consensus 27 ~~~~l~v~~~~--~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~g~~~~--~~~-------~~~~~~~~~l~~g~~D~~~~ 94 (259)
T 4dz1_A 27 EGRTLNVAVSP--ASPPMLFKSA-DGKLQGIDLELFSSYCQSRHCKLN--ITE-------YAWDGMLGAVASGQADVAFS 94 (259)
T ss_dssp TTCEEEEEECC--CBTTTBEECT-TCCEESHHHHHHHHHHHHHTCEEE--EEE-------CCHHHHHHHHHHTSSSEEEE
T ss_pred cCCeEEEEECC--CCCCeEEECC-CCCEEEeHHHHHHHHHHHhCCeEE--EEE-------cCHHHHHHHHhCCCCCEEEE
Confidence 45789999975 7899998874 789999999999999999996654 444 35999999999999999998
Q ss_pred eeeeecCceeeeeecccccccceEEEEeccCCCCCcceeeccCchhHHHHHHHHHHHHHHHhhhhhcccCCCCCCCcccc
Q 002364 543 DITIVTNRTKIVDFSQPYAASGLVVVVPFRKLNTGAWAFLRPFSPLMWTVTACFFVVVGIVVWILEHRINDEFRGPPKRQ 622 (930)
Q Consensus 543 ~~~~t~~r~~~vdft~p~~~~~~~~lv~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 622 (930)
+++.+++|.+.++||.||+..+.++++++...
T Consensus 95 ~~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~~------------------------------------------------ 126 (259)
T 4dz1_A 95 GISITDKRKKVIDFSEPYYINSFYLVSMANHK------------------------------------------------ 126 (259)
T ss_dssp EEECCHHHHTTEEECCCSEEEEEEEEEETTSC------------------------------------------------
T ss_pred CCcCCHHHhhccccccchhhCceEEEEEcCCC------------------------------------------------
Confidence 89999999999999999999999999987651
Q ss_pred chhhhHHHHHHhhhcCcCcccccchhhhHHHHHHHHHhhhhhhhhhhheeeecccccCCCCChHHhhhCCCCeEEEeCch
Q 002364 623 VITILWFSLSTLFFAHKENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLYSPINGIESLRKSDDPIGYQEGSF 702 (930)
Q Consensus 623 ~~~~~~~~~~~l~~~~~~~~~s~s~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~~v~~~~~s~ 702 (930)
..|++++||. |++||+..|+.
T Consensus 127 ---------------------------------------------------------~~i~~~~dL~--g~~v~v~~g~~ 147 (259)
T 4dz1_A 127 ---------------------------------------------------------ITLNNLNELN--KYSIGYPRGMA 147 (259)
T ss_dssp ---------------------------------------------------------CCCCSGGGGG--GSCEEEETTST
T ss_pred ---------------------------------------------------------CCCCCHHHhC--CCEEEEeCCcH
Confidence 4789999998 88999999998
Q ss_pred HHHHHHHhhcc---cc-ccceecCCHHHHHHHHhcCCCCCceEEEEecchhHHHHHhcC-ccEEEeCccccccceeeeeC
Q 002364 703 AEYYLSQELNI---SK-SRLVALRTPEDYAKALKDGPGKGGVAAVVDERPYVELFLSSQ-CSFRIVGQEFTKSGWGFAFP 777 (930)
Q Consensus 703 ~~~~l~~~~~~---~~-~~~~~~~~~~~~~~~l~~~~~~g~~~a~i~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~ 777 (930)
...++.+.... +. .++..+.+.++++++|.+ |++|+++.+...+.++..+. .++..........+++++++
T Consensus 148 ~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~----G~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (259)
T 4dz1_A 148 YSDLIKNDLEPKGYYSLSKVKLYPTYNETMADLKN----GNLDLAFIEEPVYFTFKNKKKMPIESRYVFKNVDQLGIAFK 223 (259)
T ss_dssp HHHHHHHHTGGGTSCCGGGCEEESSHHHHHHHHHH----TSCSEEEEEHHHHHHHHHTSCCCEEEEEEEEEEEEEEEEEE
T ss_pred HHHHHHHhcccccccccceeEecCCHHHHHHHHHc----CCCCEEEecHHHHHHHhccCCCceEeecccCCCceEEEEEe
Confidence 88888654321 11 567788999999999999 99999999998887776654 46666655566778999999
Q ss_pred CCCcchHHHHHHHHhhhhccchHHHHHHhccc
Q 002364 778 RDSPLAVDLSSAILELAENGDLQRIHDKWLMK 809 (930)
Q Consensus 778 k~spl~~~i~~~i~~l~e~G~~~~~~~~w~~~ 809 (930)
|++++++.||++|.+ ..++.++++.++|...
T Consensus 224 k~~~l~~~ln~~l~~-~g~~~l~~~~~~~~~~ 254 (259)
T 4dz1_A 224 KGSPVRDDFNLWLKE-QGPQKISGIVDSWMKH 254 (259)
T ss_dssp TTCHHHHHHHHHHHH-HCHHHHHHHHHHHTCC
T ss_pred CChHHHHHHHHHHHh-CCCeehHHHHHHHHhh
Confidence 999999999999999 8888899999999984
No 62
>2y7i_A STM4351; arginine-binding protein; HET: ARG; 1.90A {Salmonella enterica subsp}
Probab=99.84 E-value=3.7e-20 Score=190.48 Aligned_cols=218 Identities=21% Similarity=0.382 Sum_probs=186.9
Q ss_pred CCceeEEEecCCccccceeeeccCCcceEeeeHHHHHHHHHhCCCcccEEEEecCCCCCCCCHHHHHHHHHcCcccEEEe
Q 002364 463 NGKLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVG 542 (930)
Q Consensus 463 ~g~~lrv~~~~~~~~~p~~~~~~~~~~~~G~~~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~D~~~~ 542 (930)
..++|+|++.. +|+||.+.+. ++++.|+++|+++++++++|+++++... +|..++.++.+|++|++++
T Consensus 4 ~a~~l~v~~~~--~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~g~~~~~~~~---------~~~~~~~~l~~g~~D~~~~ 71 (229)
T 2y7i_A 4 SARTLHFGTSA--TYAPYEFVDA-DNKIVGFDIDVANAVCKEMQAECSFTNQ---------SFDSLIPSLRFKKFDAVIA 71 (229)
T ss_dssp SCCEEEEEECC--CBTTTBEECT-TSCEESHHHHHHHHHHHHTTCEEEEEEC---------CGGGHHHHHHTTSCSEECS
T ss_pred cCCcEEEEeCC--CcCCceEECC-CCCCcceeHHHHHHHHHHhCCeEEEEEc---------CHHHHHHHHhCCCceEEEe
Confidence 35789999974 7899998765 6889999999999999999976554433 4999999999999999987
Q ss_pred eeeeecCceeeeeeccccccc-ceEEEEeccCCCCCcceeeccCchhHHHHHHHHHHHHHHHhhhhhcccCCCCCCCccc
Q 002364 543 DITIVTNRTKIVDFSQPYAAS-GLVVVVPFRKLNTGAWAFLRPFSPLMWTVTACFFVVVGIVVWILEHRINDEFRGPPKR 621 (930)
Q Consensus 543 ~~~~t~~r~~~vdft~p~~~~-~~~~lv~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (930)
++..+++|.+.+.|+.||... ..++++++.
T Consensus 72 ~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~------------------------------------------------- 102 (229)
T 2y7i_A 72 GMDMTPKREQQVSFSQPYYEGLSAVVVTRKG------------------------------------------------- 102 (229)
T ss_dssp SCBCCHHHHTTSEECSCSBCCCCEEEEEETT-------------------------------------------------
T ss_pred cCccCHHHhcceeeccccccCCcEEEEEeCC-------------------------------------------------
Confidence 788899999999999999999 888888753
Q ss_pred cchhhhHHHHHHhhhcCcCcccccchhhhHHHHHHHHHhhhhhhhhhhheeeecccccCCCCChHHhhhCCCCeEEEeCc
Q 002364 622 QVITILWFSLSTLFFAHKENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLYSPINGIESLRKSDDPIGYQEGS 701 (930)
Q Consensus 622 ~~~~~~~~~~~~l~~~~~~~~~s~s~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~~v~~~~~s 701 (930)
. +++++||. |+++|+..|+
T Consensus 103 ----------------------------------------------------------~-~~~~~dL~--g~~v~~~~g~ 121 (229)
T 2y7i_A 103 ----------------------------------------------------------A-YHTFADLK--GKKVGLENGT 121 (229)
T ss_dssp ----------------------------------------------------------S-CCSTGGGT--TCEEEEETTS
T ss_pred ----------------------------------------------------------C-CCCHHHHC--CCEEEEecCC
Confidence 2 67889996 8899999999
Q ss_pred hHHHHHHHhhccccccceecCCHHHHHHHHhcCCCCCceEEEEecchhHHHHHhcCccEEEeCccccc-----cceeeee
Q 002364 702 FAEYYLSQELNISKSRLVALRTPEDYAKALKDGPGKGGVAAVVDERPYVELFLSSQCSFRIVGQEFTK-----SGWGFAF 776 (930)
Q Consensus 702 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~i~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~~~~~ 776 (930)
....++.+.. +..+++.+.+.++++++|.+ |++|+++.+...+.+++.+..++.++...+.. .++++++
T Consensus 122 ~~~~~l~~~~--~~~~~~~~~~~~~~~~~l~~----grvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (229)
T 2y7i_A 122 THQRYLQDKQ--QAITPVAYDSYLNAFTDLKN----NRLEGVFGDVAAIGKWLKNNPDYAIMDERASDPDYYGKGLGIAV 195 (229)
T ss_dssp HHHHHHHHHC--TTSEEEEESCHHHHHHHHHT----TSCSEEEEEHHHHHHHHTTCTTEEECSCCBCCTTTSCCCBCCEE
T ss_pred cHHHHHHHhC--CCCeEEecCCHHHHHHHHHc----CCcCEEEechHHHHHHHHhCCCeEEeccccccccccccceEEEE
Confidence 8888885533 34567788999999999999 99999999999999998887688887765432 3789999
Q ss_pred CCCCc-chHHHHHHHHhhhhccchHHHHHHhcc
Q 002364 777 PRDSP-LAVDLSSAILELAENGDLQRIHDKWLM 808 (930)
Q Consensus 777 ~k~sp-l~~~i~~~i~~l~e~G~~~~~~~~w~~ 808 (930)
+|++| +++.||++|.++.++|.+++|.++|++
T Consensus 196 ~~~~~~l~~~l~~~l~~l~~~g~~~~i~~k~~~ 228 (229)
T 2y7i_A 196 RKDNDALLQEINAALDKVKASPEYAQMQEKWFT 228 (229)
T ss_dssp CTTCHHHHHHHHHHHHHHHTSHHHHHHHHHHHC
T ss_pred eCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcC
Confidence 99998 999999999999999999999999985
No 63
>2iee_A ORF2, probable ABC transporter extracellular-binding protein YCKB; SR574, NESG, X-RAY, structural genomics, PSI-2; 2.20A {Bacillus subtilis}
Probab=99.82 E-value=1.2e-20 Score=199.75 Aligned_cols=218 Identities=15% Similarity=0.257 Sum_probs=183.6
Q ss_pred CCceeEEEecCCccccceeeeccCC---cceEeeeHHHHHHHHHhCCCcccEEEEecCCCCCCCCHHHHHHHHHcCcccE
Q 002364 463 NGKLLKIGVPNRASYREFVSKVRGS---DMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDA 539 (930)
Q Consensus 463 ~g~~lrv~~~~~~~~~p~~~~~~~~---~~~~G~~~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~D~ 539 (930)
..++|+|++.. +|+||.+.+. + +.+.|+++|+++++++++|+++++... .|.+++.+|.+|++|+
T Consensus 19 ~~~~l~v~~~~--~~pP~~~~~~-~~~~g~~~G~~~dl~~~i~~~~g~~v~~~~~---------~~~~~~~~l~~G~~D~ 86 (271)
T 2iee_A 19 DKGKIVVATSG--TLYPTSYHDT-DSGSDKLTGYEVEVVREAAKRLGLKVEFKEM---------GIDGMLTAVNSGQVDA 86 (271)
T ss_dssp HHTEEEEEECS--CBTTTBEEET-TTTCCEEECHHHHHHHHHHHHTTCEEEEEEC---------CSTTHHHHHHHTSSSE
T ss_pred cCCeEEEEECC--CCCCeeEeCC-CCCCCCceeeHHHHHHHHHHHcCCeEEEEEC---------CHHHHHHHHHCCCcCE
Confidence 45789999985 7899998764 4 889999999999999999976555443 4999999999999999
Q ss_pred EEeeeeeecCceeeeeecccccccceEEEEeccCCCCCcceeeccCchhHHHHHHHHHHHHHHHhhhhhcccCCCCCCCc
Q 002364 540 VVGDITIVTNRTKIVDFSQPYAASGLVVVVPFRKLNTGAWAFLRPFSPLMWTVTACFFVVVGIVVWILEHRINDEFRGPP 619 (930)
Q Consensus 540 ~~~~~~~t~~r~~~vdft~p~~~~~~~~lv~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 619 (930)
++++++.+++|.+.++||.||.....++++++...
T Consensus 87 ~~~~~~~t~~r~~~~~fs~p~~~~~~~l~~~~~~~--------------------------------------------- 121 (271)
T 2iee_A 87 AANDIDVTKDREEKFAFSTPYKYSYGTAIVRKDDL--------------------------------------------- 121 (271)
T ss_dssp ECSSCBCCHHHHTTEEECCCSEEEEEEEEECTTTG---------------------------------------------
T ss_pred EEeCCcCChhhccceEEeecceeCCeEEEEECCCC---------------------------------------------
Confidence 99888899999999999999999999999987650
Q ss_pred cccchhhhHHHHHHhhhcCcCcccccchhhhHHHHHHHHHhhhhhhhhhhheeeecccccCCCCChHHhhhCCCCeEEEe
Q 002364 620 KRQVITILWFSLSTLFFAHKENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLYSPINGIESLRKSDDPIGYQE 699 (930)
Q Consensus 620 ~~~~~~~~~~~~~~l~~~~~~~~~s~s~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~~v~~~~ 699 (930)
..|++++||. |++||+..
T Consensus 122 ------------------------------------------------------------~~i~~~~dL~--g~~i~v~~ 139 (271)
T 2iee_A 122 ------------------------------------------------------------SGIKTLKDLK--GKKAAGAA 139 (271)
T ss_dssp ------------------------------------------------------------GGCSSGGGGT--TCEEESCT
T ss_pred ------------------------------------------------------------CCCCCHHHhC--CCEEEEeC
Confidence 2688999997 88999999
Q ss_pred CchHHHHHHHhhccccccceecCCHHHH--HHHHhcCCCCCceEEEEecchhHHHHHh-cC--ccEEEe-Ccccccccee
Q 002364 700 GSFAEYYLSQELNISKSRLVALRTPEDY--AKALKDGPGKGGVAAVVDERPYVELFLS-SQ--CSFRIV-GQEFTKSGWG 773 (930)
Q Consensus 700 ~s~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~g~~~a~i~~~~~~~~~~~-~~--~~l~~~-~~~~~~~~~~ 773 (930)
|+....++. ..+. +++.+.+.++. +++|.+ |++| ++.+.....+++. +. .++.++ +..+...+++
T Consensus 140 g~~~~~~l~-~~~~---~~~~~~~~~~~~l~~~L~~----GrvD-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (271)
T 2iee_A 140 TTVYMEVAR-KYGA---KEVIYDNATNEQYLKDVAN----GRTD-VILNDYYLQTLALAAFPDLNITIHPDIKYMPNKQA 210 (271)
T ss_dssp TSHHHHHHH-HTTC---EEEECSSCCHHHHHHHHHH----TSSC-EEEEEHHHHHHHHHHCTTSSCEECSSCCEEEEEEC
T ss_pred CccHHHHHH-HcCC---ceEEeCChhhHHHHHHHHc----CCcc-EEeccHHHHHHHHHhCCCCceEEecCCCcccceEE
Confidence 998888884 3332 67778888888 999999 9999 6666666555544 43 357777 6667777899
Q ss_pred eeeCCCCc-chHHHHHHHHhhhhccchHHHHHHhcc
Q 002364 774 FAFPRDSP-LAVDLSSAILELAENGDLQRIHDKWLM 808 (930)
Q Consensus 774 ~~~~k~sp-l~~~i~~~i~~l~e~G~~~~~~~~w~~ 808 (930)
++++|++| +++.||++|.+|.++|.+++|.+||+.
T Consensus 211 ~~~~k~~~~l~~~ln~al~~l~~~G~~~~i~~k~~~ 246 (271)
T 2iee_A 211 LVMKKSNAALQKKMNEALKEMSKDGSLTKLSKQFFN 246 (271)
T ss_dssp CEEETTCHHHHHHHHHHHHHHHHHTHHHHHHHHHTT
T ss_pred EEEcCCCHHHHHHHHHHHHHHHHCCCHHHHHHHhCC
Confidence 99999998 999999999999999999999999998
No 64
>3qax_A Probable ABC transporter arginine-binding protein; periplasmic, transport PR; HET: ARG; 2.00A {Chlamydophila pneumoniae} PDB: 3g41_A* 3n26_A*
Probab=99.82 E-value=1.9e-19 Score=190.07 Aligned_cols=219 Identities=18% Similarity=0.269 Sum_probs=191.7
Q ss_pred CCceeEEEecCCccccceeeeccCCcceEeeeHHHHHHHHHhCCCcccEEEEecCCCCCCCCHHHHHHHHHcCcccEEEe
Q 002364 463 NGKLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVG 542 (930)
Q Consensus 463 ~g~~lrv~~~~~~~~~p~~~~~~~~~~~~G~~~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~D~~~~ 542 (930)
..++++|++.. .|+||.+.+. ++++.|+++|+++.+++++|++++ ++. .+|.+++.++.+|++|++++
T Consensus 29 ~~~~l~v~~~~--~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~g~~~~--~~~-------~~~~~~~~~l~~g~~D~~~~ 96 (268)
T 3qax_A 29 RNRIWIVGTNA--TYPPFEYVDA-QGEVVGFDIDLAKAISEKLGKQLE--VRE-------FAFDALILNLKKHRIDAILA 96 (268)
T ss_dssp --CEEEEEECS--CBTTTBEECT-TSCEESHHHHHHHHHHHHHTCEEE--EEE-------CCGGGHHHHHHHTSSSEECS
T ss_pred cCCeEEEEECC--CCCCceEECC-CCCEEEEEHHHHHHHHHHhCCeEE--EEe-------cCHHHHHHHHhCCCccEEee
Confidence 35689999975 7889998765 788999999999999999996644 444 34999999999999999988
Q ss_pred eeeeecCceeeeeeccccc--ccceEEEEeccCCCCCcceeeccCchhHHHHHHHHHHHHHHHhhhhhcccCCCCCCCcc
Q 002364 543 DITIVTNRTKIVDFSQPYA--ASGLVVVVPFRKLNTGAWAFLRPFSPLMWTVTACFFVVVGIVVWILEHRINDEFRGPPK 620 (930)
Q Consensus 543 ~~~~t~~r~~~vdft~p~~--~~~~~~lv~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (930)
++..+.+|.+.++| .||. ..+.++++++..
T Consensus 97 ~~~~~~~r~~~~~~-~p~~~~~~~~~~~~~~~~----------------------------------------------- 128 (268)
T 3qax_A 97 GMSITPSRQKEIAL-LPYYGDEVQELMVVSKRS----------------------------------------------- 128 (268)
T ss_dssp CCBCCHHHHTTSEE-EEEECCCBCEEEEEEETT-----------------------------------------------
T ss_pred cCccCHhHhcceee-ecceecccceEEEEECCC-----------------------------------------------
Confidence 89999999999999 9999 888999998875
Q ss_pred ccchhhhHHHHHHhhhcCcCcccccchhhhHHHHHHHHHhhhhhhhhhhheeeecccccCCCCChHHhhhCCCCeEEEeC
Q 002364 621 RQVITILWFSLSTLFFAHKENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLYSPINGIESLRKSDDPIGYQEG 700 (930)
Q Consensus 621 ~~~~~~~~~~~~~l~~~~~~~~~s~s~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~~v~~~~~ 700 (930)
..+++++||. |+++|+..|
T Consensus 129 -----------------------------------------------------------~~i~~~~dL~--g~~i~~~~g 147 (268)
T 3qax_A 129 -----------------------------------------------------------LETPVLPLTQ--YSSVAVQTG 147 (268)
T ss_dssp -----------------------------------------------------------SCSCCCCGGG--SSCEEEETT
T ss_pred -----------------------------------------------------------CCCCCHHHhC--CCEEEEecC
Confidence 5788999997 889999999
Q ss_pred chHHHHHHHhhccccccceecCCHHHHHHHHhcCCCCCceEEEEecchhHHHHHhcCccEEEeCccccccc----eeeee
Q 002364 701 SFAEYYLSQELNISKSRLVALRTPEDYAKALKDGPGKGGVAAVVDERPYVELFLSSQCSFRIVGQEFTKSG----WGFAF 776 (930)
Q Consensus 701 s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~i~~~~~~~~~~~~~~~l~~~~~~~~~~~----~~~~~ 776 (930)
+....++.. .+..+++.+.+.++.+++|.+ |++|+++.+...+.++..+...+.+++..+...+ +++++
T Consensus 148 ~~~~~~l~~---~~~~~~~~~~~~~~~~~~l~~----G~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (268)
T 3qax_A 148 TYQEHYLLS---QPGICVRSFDSTLEVIMEVRY----GKSPVAVLEPSVGRVVLKDFPNLVATRLELPPECWVLGCGLGV 220 (268)
T ss_dssp SHHHHHHHT---STTCCEEEESCHHHHHHHHHT----TSSSEEEECHHHHHHHGGGCTTEEEEEEECCGGGCBCCEEEEE
T ss_pred cHHHHHHHh---CCCceEEecCCHHHHHHHHHc----CCCCEEEecHHHHHHHHHhCCCcEEecCccCcccccccEEEEE
Confidence 988888854 345677788999999999999 9999999999999999888777887776666666 99999
Q ss_pred CCCCc-chHHHHHHHHhhhhccchHHHHHHhccc
Q 002364 777 PRDSP-LAVDLSSAILELAENGDLQRIHDKWLMK 809 (930)
Q Consensus 777 ~k~sp-l~~~i~~~i~~l~e~G~~~~~~~~w~~~ 809 (930)
+|++| +++.+|++|.++.++|.+++|.++|+..
T Consensus 221 ~k~~~~l~~~l~~~l~~l~~~g~~~~i~~k~~~~ 254 (268)
T 3qax_A 221 AKDRPEEIQTIQQAITDLKSEGVIQSLTKKWQLS 254 (268)
T ss_dssp CTTCHHHHHHHHHHHHHHHHTTHHHHHHHHTTCS
T ss_pred eCCCHHHHHHHHHHHHHHHHCCcHHHHHHHHcCC
Confidence 99998 9999999999999999999999999983
No 65
>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme}
Probab=99.82 E-value=9.7e-20 Score=187.03 Aligned_cols=218 Identities=25% Similarity=0.392 Sum_probs=182.1
Q ss_pred ceeEEEecCCccccceeeeccCCcceEeeeHHHHHHHHHhCCCcccEEEEecCCCCCCCCHHHHHHHHHcCcccEEEeee
Q 002364 465 KLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGDI 544 (930)
Q Consensus 465 ~~lrv~~~~~~~~~p~~~~~~~~~~~~G~~~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~D~~~~~~ 544 (930)
++|+|++. +++||.+. . ++++.|+++|+++.+++++|+++++... .+|.+++.+|.+|++|++++++
T Consensus 3 ~~l~v~~~---~~~P~~~~-~-~g~~~G~~~dl~~~~~~~~g~~~~~~~~--------~~~~~~~~~l~~g~~D~~~~~~ 69 (228)
T 2pyy_A 3 QPLLVATR---VIPPFVLS-N-KGELSGFSIDLWRSIATQIGIESKLIEY--------SSVPELISAIKDNKVNLGIAAI 69 (228)
T ss_dssp -CEEEEEC---CBTTTBBC-C----CBSHHHHHHHHHHHHHTCCEEEEEC--------SSHHHHHHHHHTTSCSEECSSC
T ss_pred ceEEEEec---CCCCeEEe-c-CCceEEEeHHHHHHHHHHhCCcEEEEEc--------CCHHHHHHHHHCCCcCEEEecc
Confidence 57999998 57888877 3 7889999999999999999977555443 2599999999999999998888
Q ss_pred eeecCceeeeeecccccccceEEEEeccCCCCCcceeeccCchhHHHHHHHHHHHHHHHhhhhhcccCCCCCCCccccch
Q 002364 545 TIVTNRTKIVDFSQPYAASGLVVVVPFRKLNTGAWAFLRPFSPLMWTVTACFFVVVGIVVWILEHRINDEFRGPPKRQVI 624 (930)
Q Consensus 545 ~~t~~r~~~vdft~p~~~~~~~~lv~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (930)
..+.+|.+.+.|+.||.....++++++..+.
T Consensus 70 ~~~~~r~~~~~~~~p~~~~~~~~~~~~~~~~------------------------------------------------- 100 (228)
T 2pyy_A 70 SITAEREQNFDFSLPIFASGLQIMVRNLESG------------------------------------------------- 100 (228)
T ss_dssp BCCHHHHHHSEECSCSEEEEEEEEEEC-----------------------------------------------------
T ss_pred ccCHHHHccceecccchhcceEEEEECCccc-------------------------------------------------
Confidence 8899999999999999999999999876510
Q ss_pred hhhHHHHHHhhhcCcCcccccchhhhHHHHHHHHHhhhhhhhhhhheeeecccccCCCCChHHhhhCCCCeEEEeCchHH
Q 002364 625 TILWFSLSTLFFAHKENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLYSPINGIESLRKSDDPIGYQEGSFAE 704 (930)
Q Consensus 625 ~~~~~~~~~l~~~~~~~~~s~s~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~~v~~~~~s~~~ 704 (930)
...+++++||. |+++|+..|+...
T Consensus 101 ------------------------------------------------------~~~~~~~~dL~--g~~i~~~~g~~~~ 124 (228)
T 2pyy_A 101 ------------------------------------------------------TGDIRSIDDLP--GKVVATTAGSTAA 124 (228)
T ss_dssp -------------------------------------------------------CCCCSGGGCT--TCEEEEETTSHHH
T ss_pred ------------------------------------------------------cCCcCCHHHcC--CCeEEEEcCcHHH
Confidence 13688999997 8899999999888
Q ss_pred HHHHHhhccccccceecCCHHHHHHHHhcCCCCCceEEEEecchhHHHHHhcCc--cEEEeCccccccceeeeeCCCCcc
Q 002364 705 YYLSQELNISKSRLVALRTPEDYAKALKDGPGKGGVAAVVDERPYVELFLSSQC--SFRIVGQEFTKSGWGFAFPRDSPL 782 (930)
Q Consensus 705 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~i~~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~~k~spl 782 (930)
.++.+ .+ .++..+.+.++.+++|.+ |++|+++.+...+.+++.+.. ++.+++..+...+++++++|++++
T Consensus 125 ~~l~~-~~---~~~~~~~~~~~~~~~l~~----g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 196 (228)
T 2pyy_A 125 TYLRE-HH---ISVLEVPKIEEAYKALQT----KKADAVVFDAPVLLFYAANEGKGKVEIVGSILREESYGIILPNNSPY 196 (228)
T ss_dssp HHHHH-TT---CEEEEESSHHHHHHHHHT----TSSSEEEEEHHHHHHHHHTTTTTTEEEEEEEEEEEEECCEECTTCTT
T ss_pred HHHHH-cC---CceEecCCHHHHHHHHHc----CCCCEEEecHHHHHHHHHhCCCCcEEEecccccceeEEEEEeCChHH
Confidence 88854 32 356778899999999999 999999999998888877753 677777666677889999999999
Q ss_pred hHHHHHHHHhhhhccchHHHHHHhcc
Q 002364 783 AVDLSSAILELAENGDLQRIHDKWLM 808 (930)
Q Consensus 783 ~~~i~~~i~~l~e~G~~~~~~~~w~~ 808 (930)
.+.+|++|.++.++|.+++|.++|+.
T Consensus 197 ~~~~~~~l~~l~~~g~~~~i~~k~~~ 222 (228)
T 2pyy_A 197 RKPINQALLNLKENGTYQSLYDKWFD 222 (228)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHcC
Confidence 99999999999999999999999998
No 66
>2q88_A EHUB, putative ABC transporter amino acid-binding prote; substrate-binding protein, compatible solues, ABC-transporte osmoprotection; HET: 4CS; 1.90A {Sinorhizobium meliloti} PDB: 2q89_A*
Probab=99.82 E-value=9e-20 Score=191.33 Aligned_cols=221 Identities=17% Similarity=0.225 Sum_probs=185.7
Q ss_pred CceeEEEecCCccccceeeeccCCcceEeeeHHHHHHHHHhCCCc-ccEEEEecCCCCCCCCHHHHHHHHHcCcccEEEe
Q 002364 464 GKLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYA-VPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVG 542 (930)
Q Consensus 464 g~~lrv~~~~~~~~~p~~~~~~~~~~~~G~~~dl~~~l~~~l~f~-~~~~~~~~~~~~~~~~~~~~~~~l~~g~~D~~~~ 542 (930)
.++|+|++. +|+||.+.+. ++++.|+++|+++++++++|++ +++... .|.+++.++.+|++|++++
T Consensus 12 ~~~l~v~~~---~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~g~~~~~~~~~---------~~~~~~~~l~~g~~D~~~~ 78 (257)
T 2q88_A 12 QGFARIAIA---NEPPFTAVGA-DGKVSGAAPDVAREIFKRLGVADVVASIS---------EYGAMIPGLQAGRHDAITA 78 (257)
T ss_dssp HTEEEEEEC---CCTTTCEECT-TCCEESHHHHHHHHHHHHTTCCEEEEEEC---------CGGGHHHHHHTTSCSEECS
T ss_pred CCeEEEEcC---CCCCeeEECC-CCCcccccHHHHHHHHHHcCCCeeeEEeC---------CHHHHHHHHHCCCcCEEEe
Confidence 468999996 6889988764 6889999999999999999976 555443 4999999999999999987
Q ss_pred eeeeecCceeeeeecccccccceEEEEeccCCCCCcceeeccCchhHHHHHHHHHHHHHHHhhhhhcccCCCCCCCcccc
Q 002364 543 DITIVTNRTKIVDFSQPYAASGLVVVVPFRKLNTGAWAFLRPFSPLMWTVTACFFVVVGIVVWILEHRINDEFRGPPKRQ 622 (930)
Q Consensus 543 ~~~~t~~r~~~vdft~p~~~~~~~~lv~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 622 (930)
++..+++|.+.++||.||.....++++++...
T Consensus 79 ~~~~t~~r~~~~~~s~p~~~~~~~~~~~~~~~------------------------------------------------ 110 (257)
T 2q88_A 79 GLFMKPERCAAVAYSQPILCDAEAFALKKGNP------------------------------------------------ 110 (257)
T ss_dssp CCBCCHHHHTTSEECSCCCEECEEEEEETTCT------------------------------------------------
T ss_pred cccCCHHHHhccccccchhcCceEEEEECCCc------------------------------------------------
Confidence 88899999999999999999999999987661
Q ss_pred chhhhHHHHHHhhhcCcCcccccchhhhHHHHHHHHHhhhhhhhhhhheeeecccccCCCCChHHhhhC-CCCeEEEeCc
Q 002364 623 VITILWFSLSTLFFAHKENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLYSPINGIESLRKS-DDPIGYQEGS 701 (930)
Q Consensus 623 ~~~~~~~~~~~l~~~~~~~~~s~s~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~-~~~v~~~~~s 701 (930)
..+++++||..+ |++||+..|+
T Consensus 111 ---------------------------------------------------------~~i~~~~dL~~~~g~~i~~~~g~ 133 (257)
T 2q88_A 111 ---------------------------------------------------------LGLKSYKDIADNPDAKIGAPGGG 133 (257)
T ss_dssp ---------------------------------------------------------TCCCBHHHHHHCTTCCEEECTTS
T ss_pred ---------------------------------------------------------cCCCCHHHHhccCCceEEEECCc
Confidence 268899999755 7889999999
Q ss_pred hHHHHHHHhhccccccceecCCHHHHHHHHhcCCCCCceEEEEecchhHHHHHhcCc--cEEEeCcccc--ccceeeeeC
Q 002364 702 FAEYYLSQELNISKSRLVALRTPEDYAKALKDGPGKGGVAAVVDERPYVELFLSSQC--SFRIVGQEFT--KSGWGFAFP 777 (930)
Q Consensus 702 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~i~~~~~~~~~~~~~~--~l~~~~~~~~--~~~~~~~~~ 777 (930)
....++. ..+.+..++..+.+.++++++|.+ |++|+++.+...+.+++.+.. .+..+..... ..+++++++
T Consensus 134 ~~~~~l~-~~~~~~~~~~~~~~~~~~~~~l~~----grvDa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (257)
T 2q88_A 134 TEEKLAL-EAGVPRDRVIVVPDGQSGLKMLQD----GRIDVYSLPVLSINDLVSKANDPNVEVLAPVEGAPVYCDGAAFR 208 (257)
T ss_dssp HHHHHHH-HTTCCGGGEEECSSHHHHHHHHHH----TSCSEEEEEHHHHHHHHHHHCCTTEEEECSCBTCCCEEBCCEEC
T ss_pred ccHHHHH-hcCCCCceEEEcCCHHHHHHHHHc----CCCcEEEcCHHHHHHHHHhCCCcceeeecccCCccccceEEEEc
Confidence 8888884 444555678889999999999999 999999999999988877643 3555443211 245778999
Q ss_pred CCCc-chHHHHHHHHhhhhccchHHHHHHhc
Q 002364 778 RDSP-LAVDLSSAILELAENGDLQRIHDKWL 807 (930)
Q Consensus 778 k~sp-l~~~i~~~i~~l~e~G~~~~~~~~w~ 807 (930)
|+++ +.+.||++|.++.++|.+++|.++|.
T Consensus 209 k~~~~l~~~l~~~l~~~~~~g~~~~i~~k~~ 239 (257)
T 2q88_A 209 KGDEALRDAFDVELAKLKESGEFAKIIEPYG 239 (257)
T ss_dssp GGGHHHHHHHHHHHHHHHHHTHHHHHHGGGT
T ss_pred CCCHHHHHHHHHHHHHHHhCCcHHHHHHHhC
Confidence 9977 99999999999999999999999994
No 67
>2pvu_A ARTJ; basic amino acid binding protein, ABC transport system, THER bacterium, transport protein; HET: LYS; 1.79A {Geobacillus stearothermophilus} PDB: 2q2a_A* 2q2c_A*
Probab=99.81 E-value=2.6e-19 Score=189.56 Aligned_cols=220 Identities=20% Similarity=0.350 Sum_probs=189.1
Q ss_pred CCceeEEEecCCccccceeeeccCCcceEeeeHHHHHHHHHhCCCcccEEEEecCCCCCCCCHHHHHHHHHcCcccEEEe
Q 002364 463 NGKLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVG 542 (930)
Q Consensus 463 ~g~~lrv~~~~~~~~~p~~~~~~~~~~~~G~~~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~D~~~~ 542 (930)
..++|+|++.. .|+||.+.+ ++.+.|+++|+++.+++++|+++++ +. ..|.+++.+|.+|++|++++
T Consensus 40 ~~~~l~v~~~~--~~~P~~~~~--~g~~~G~~~dl~~~i~~~~g~~v~~--~~-------~~~~~~~~~l~~G~~D~~~~ 106 (272)
T 2pvu_A 40 TKKKVVVGTDA--AFAPFEYMQ--KGKIVGFDVDLLDAVMKAAGLDYEL--KN-------IGWDPLFASLQSKEVDMGIS 106 (272)
T ss_dssp CCCCEEEEECC--CBTTTBEEE--TTEEESHHHHHHHHHHHHHTCCEEE--EE-------CCHHHHHHHHHHTSSSEECS
T ss_pred cCCeEEEEECC--CCCCeEEec--CCeEEEEHHHHHHHHHHHhCCceEE--EE-------CCHHHHHHHHhCCCCCEEEe
Confidence 45789999985 788998874 6889999999999999999976554 44 23999999999999999988
Q ss_pred eeeeecCceeeeeecccccccceEEEEeccCCCCCcceeeccCchhHHHHHHHHHHHHHHHhhhhhcccCCCCCCCcccc
Q 002364 543 DITIVTNRTKIVDFSQPYAASGLVVVVPFRKLNTGAWAFLRPFSPLMWTVTACFFVVVGIVVWILEHRINDEFRGPPKRQ 622 (930)
Q Consensus 543 ~~~~t~~r~~~vdft~p~~~~~~~~lv~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 622 (930)
++..+.+|.+.+.|+.||.....++++++..
T Consensus 107 ~~~~~~~r~~~~~~s~p~~~~~~~l~~~~~~------------------------------------------------- 137 (272)
T 2pvu_A 107 GITITDERKQSYDFSDPYFEATQVILVKQGS------------------------------------------------- 137 (272)
T ss_dssp SCBCCHHHHTTEEECSCCEEECEEEEEETTC-------------------------------------------------
T ss_pred CCcCCHHHHhcCccchhhhccceEEEEECCC-------------------------------------------------
Confidence 7888899999999999999999999998765
Q ss_pred chhhhHHHHHHhhhcCcCcccccchhhhHHHHHHHHHhhhhhhhhhhheeeecccccCCCCChHHhhhCCCCeEEEeCch
Q 002364 623 VITILWFSLSTLFFAHKENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLYSPINGIESLRKSDDPIGYQEGSF 702 (930)
Q Consensus 623 ~~~~~~~~~~~l~~~~~~~~~s~s~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~~v~~~~~s~ 702 (930)
++++++||. |+++++..|+.
T Consensus 138 ----------------------------------------------------------~i~~~~dL~--g~~i~~~~g~~ 157 (272)
T 2pvu_A 138 ----------------------------------------------------------PVKNALDLK--GKTIGVQNATT 157 (272)
T ss_dssp ----------------------------------------------------------CCCSGGGGT--TSCEEEETTSH
T ss_pred ----------------------------------------------------------CCCCHHHhC--CCeEEEEcCch
Confidence 488999997 88999999998
Q ss_pred HHHHHHHhhccccccceecCCHHHHHHHHhcCCCCCceEEEEecchhHHHHHhcCc--cEEEeCccc--cccceeeeeCC
Q 002364 703 AEYYLSQELNISKSRLVALRTPEDYAKALKDGPGKGGVAAVVDERPYVELFLSSQC--SFRIVGQEF--TKSGWGFAFPR 778 (930)
Q Consensus 703 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~i~~~~~~~~~~~~~~--~l~~~~~~~--~~~~~~~~~~k 778 (930)
...++.+.++ ...+++.+.+.++.+++|.+ |++|+++.+...+.++..+.. ++.+++... ...+++++++|
T Consensus 158 ~~~~l~~~~~-~~~~i~~~~~~~~~~~~l~~----G~vDa~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~k 232 (272)
T 2pvu_A 158 GQEAAEKLFG-KGPHIKKFETTVVAIMELLN----GGVDAVITDNAVANEYVKNNPNKKLQVIEDPKNFASEYYGMIFPK 232 (272)
T ss_dssp HHHHHHHHHC-SSTTEEEESSHHHHHHHHHT----TSCSEEEEEHHHHHHHHHHCGGGCEEEECCTTTSCCEEECCEEET
T ss_pred HHHHHHHhcC-CCCeEEEcCCHHHHHHHHHc----CCccEEEeCHHHHHHHHHhCCCCceEEeccccccCCceEEEEEeC
Confidence 8888866544 34567788999999999999 999999999999988887764 388887653 56678999999
Q ss_pred CCcchHHHHHHHHhhhhccchHHHHHHhccc
Q 002364 779 DSPLAVDLSSAILELAENGDLQRIHDKWLMK 809 (930)
Q Consensus 779 ~spl~~~i~~~i~~l~e~G~~~~~~~~w~~~ 809 (930)
+..+++.+|++|.++.++|.+++|.++|+..
T Consensus 233 ~~~l~~~l~~~l~~l~~~g~~~~i~~k~~~~ 263 (272)
T 2pvu_A 233 NSELKAKVDEALKNVINSGKYTEIYKKWFGK 263 (272)
T ss_dssp TCTTHHHHHHHHHHHHHTTHHHHHHHHHHSS
T ss_pred CHHHHHHHHHHHHHHHhCChHHHHHHHHcCC
Confidence 9449999999999999999999999999983
No 68
>4i62_A Amino acid ABC transporter, periplasmic amino ACI protein, putative; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases (NIAI niaid; HET: ARG; 1.05A {Streptococcus pneumoniae}
Probab=99.81 E-value=2e-19 Score=190.02 Aligned_cols=220 Identities=22% Similarity=0.350 Sum_probs=189.6
Q ss_pred CceeEEEecCCccccceee---eccCCcceEeeeHHHHHHHHHhCCCcccEEEEecCCCCCCCCHHHHHHHHHcCcccEE
Q 002364 464 GKLLKIGVPNRASYREFVS---KVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAV 540 (930)
Q Consensus 464 g~~lrv~~~~~~~~~p~~~---~~~~~~~~~G~~~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~D~~ 540 (930)
.++++|++.. .|+||.+ .+. ++.+.|+++|+++.+++++|+++++ +. .+|.+++.++.+|++|++
T Consensus 38 ~~~l~v~~~~--~~~P~~~~~~~~~-~g~~~G~~~dl~~~~~~~~g~~~~~--~~-------~~~~~~~~~l~~g~~D~~ 105 (269)
T 4i62_A 38 KGKLVVALNP--DFAPFEYQKVVDG-KNQIVGSDIELAKAIATELGVELEL--SP-------MSFDNVLASVQSGKADLA 105 (269)
T ss_dssp HTEEEEEECS--CBTTTBEEEEETT-EEEEESHHHHHHHHHHHHHTCEEEE--EE-------CCHHHHHHHHHTTSCSEE
T ss_pred CCeEEEEecC--CCCCceeecccCC-CCcEeeecHHHHHHHHHHHCCceEE--EE-------cCHHHHHHHHhCCCccEE
Confidence 4589999985 7889988 543 7889999999999999999966544 44 359999999999999999
Q ss_pred EeeeeeecCceeeeeecccccccceEEEEeccCCCCCcceeeccCchhHHHHHHHHHHHHHHHhhhhhcccCCCCCCCcc
Q 002364 541 VGDITIVTNRTKIVDFSQPYAASGLVVVVPFRKLNTGAWAFLRPFSPLMWTVTACFFVVVGIVVWILEHRINDEFRGPPK 620 (930)
Q Consensus 541 ~~~~~~t~~r~~~vdft~p~~~~~~~~lv~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (930)
++++..+.+|.+.+.|+.||.....++++++..
T Consensus 106 ~~~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~----------------------------------------------- 138 (269)
T 4i62_A 106 ISGVSKTDERSKVFDFSTPYYTAKNKLIVKKSD----------------------------------------------- 138 (269)
T ss_dssp CSSCBCCHHHHTTEEECSCCEECCEEEEEEGGG-----------------------------------------------
T ss_pred ecCCcCCHhHhhceecccchhhcceEEEEECCc-----------------------------------------------
Confidence 988999999999999999999999999998775
Q ss_pred ccchhhhHHHHHHhhhcCcCcccccchhhhHHHHHHHHHhhhhhhhhhhheeeecccccCCCCChHHhhhCCCCeEEEeC
Q 002364 621 RQVITILWFSLSTLFFAHKENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLYSPINGIESLRKSDDPIGYQEG 700 (930)
Q Consensus 621 ~~~~~~~~~~~~~l~~~~~~~~~s~s~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~~v~~~~~ 700 (930)
...|++++||. |+++|+..|
T Consensus 139 ----------------------------------------------------------~~~i~~~~dL~--g~~i~~~~g 158 (269)
T 4i62_A 139 ----------------------------------------------------------LATYQSVNDLA--QKKVGAQKG 158 (269)
T ss_dssp ----------------------------------------------------------TTTCSSGGGGC---CEEEEETT
T ss_pred ----------------------------------------------------------cccccCHHHhC--CCeEEEecC
Confidence 14789999997 889999999
Q ss_pred chHHHHHHHhhccccccceecCCHHHHHHHHhcCCCCCceEEEEecchhHHHHHhcCccEEEeCcccc---ccceeeeeC
Q 002364 701 SFAEYYLSQELNISKSRLVALRTPEDYAKALKDGPGKGGVAAVVDERPYVELFLSSQCSFRIVGQEFT---KSGWGFAFP 777 (930)
Q Consensus 701 s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~i~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~ 777 (930)
+....++.+.. +..++..+.+.++.+++|.+ |++|+++.+.+.+.+++.+...+.+....+. ..+++++++
T Consensus 159 ~~~~~~l~~~~--~~~~~~~~~~~~~~~~~l~~----g~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (269)
T 4i62_A 159 SIQETMAKDLL--QNSSLVSLPKNGNLITDLKS----GQVDAVIFEEPVAKGFVENNPDLAIADLNFEKEQDDSYAVAMK 232 (269)
T ss_dssp SHHHHHHHHHC--TTSEEEEESCHHHHHHHHHT----TSSSEEEEEHHHHHHHHHHCTTEEECSCCCCC-CCCEECCEEE
T ss_pred chHHHHHHHhC--CCCcEEecCCHHHHHHHHHc----CCCCEEEeChHHHHHHHHhCCCCeEEeeccCCCcccceEEEEe
Confidence 98888885543 34577888999999999999 9999999999999998888777766654443 567899999
Q ss_pred CCCc-chHHHHHHHHhhhhccchHHHHHHhcc
Q 002364 778 RDSP-LAVDLSSAILELAENGDLQRIHDKWLM 808 (930)
Q Consensus 778 k~sp-l~~~i~~~i~~l~e~G~~~~~~~~w~~ 808 (930)
|++| +.+.||++|.++.++|.+++|.++|+.
T Consensus 233 ~~~~~l~~~l~~~l~~l~~~g~~~~i~~k~~~ 264 (269)
T 4i62_A 233 KDSKELKEAVDKTIQKLKESGELDKLIEDAFK 264 (269)
T ss_dssp SSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhCChHHHHHHHHhC
Confidence 9998 999999999999999999999999997
No 69
>1xt8_A Putative amino-acid transporter periplasmic solut protein; ABC transport, cysteine uptake; 2.00A {Campylobacter jejuni} SCOP: c.94.1.1
Probab=99.80 E-value=3e-19 Score=191.19 Aligned_cols=218 Identities=20% Similarity=0.277 Sum_probs=189.2
Q ss_pred CceeEEEecCCccccceeeeccCCcceEeeeHHHHHHHHHhC---CCcccEEEEecCCCCCCCCHHHHHHHHHcCcccEE
Q 002364 464 GKLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLL---PYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAV 540 (930)
Q Consensus 464 g~~lrv~~~~~~~~~p~~~~~~~~~~~~G~~~dl~~~l~~~l---~f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~D~~ 540 (930)
.++|+|++.. +|+||.+.+. ++.+.|+++|+++.+++++ |+++++... .|.+++.++.+|++|++
T Consensus 43 ~~~l~v~~~~--~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~~~~g~~~~~~~~---------~~~~~~~~l~~G~~D~~ 110 (292)
T 1xt8_A 43 NGVVRIGVFG--DKPPFGYVDE-KGNNQGYDIALAKRIAKELFGDENKVQFVLV---------EAANRVEFLKSNKVDII 110 (292)
T ss_dssp HSSEEEEECS--EETTTEEECT-TSCEESHHHHHHHHHHHHHHSCTTCEEEEEC---------CGGGHHHHHHTTSCSEE
T ss_pred CCeEEEEECC--CCCCeeEECC-CCCEeeEhHHHHHHHHHHhccCCceEEEEEc---------CHHHHHHHHhCCCeeEE
Confidence 4579999975 7899998764 7889999999999999999 976555433 39999999999999999
Q ss_pred EeeeeeecCceeeeeecccccccceEEEEeccCCCCCcceeeccCchhHHHHHHHHHHHHHHHhhhhhcccCCCCCCCcc
Q 002364 541 VGDITIVTNRTKIVDFSQPYAASGLVVVVPFRKLNTGAWAFLRPFSPLMWTVTACFFVVVGIVVWILEHRINDEFRGPPK 620 (930)
Q Consensus 541 ~~~~~~t~~r~~~vdft~p~~~~~~~~lv~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (930)
++++..+.+|.+.+.|+.||.....++++++..
T Consensus 111 ~~~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~----------------------------------------------- 143 (292)
T 1xt8_A 111 LANFTQTPQRAEQVDFCSPYMKVALGVAVPKDS----------------------------------------------- 143 (292)
T ss_dssp CSSCBCCHHHHTTEEECCCCEEEEEEEEEETTC-----------------------------------------------
T ss_pred eecCCCCcchhcceeeeccceecceEEEEECCC-----------------------------------------------
Confidence 887888999999999999999999999988654
Q ss_pred ccchhhhHHHHHHhhhcCcCcccccchhhhHHHHHHHHHhhhhhhhhhhheeeecccccCCCCChHHhhhCCCCeEEEeC
Q 002364 621 RQVITILWFSLSTLFFAHKENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLYSPINGIESLRKSDDPIGYQEG 700 (930)
Q Consensus 621 ~~~~~~~~~~~~~l~~~~~~~~~s~s~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~~v~~~~~ 700 (930)
++++++||. |+++|+..|
T Consensus 144 ------------------------------------------------------------~i~~~~dL~--g~~i~~~~g 161 (292)
T 1xt8_A 144 ------------------------------------------------------------NITSVEDLK--DKTLLLNKG 161 (292)
T ss_dssp ------------------------------------------------------------CCCSSGGGT--TSEEEEETT
T ss_pred ------------------------------------------------------------CCCCHHHhC--CCEEEEeCC
Confidence 678899997 889999999
Q ss_pred chHHHHHHHhhccccccceecCCHHHHHHHHhcCCCCCceEEEEecchhHHHHHhcCccEEEeCccccccce-eeeeCCC
Q 002364 701 SFAEYYLSQELNISKSRLVALRTPEDYAKALKDGPGKGGVAAVVDERPYVELFLSSQCSFRIVGQEFTKSGW-GFAFPRD 779 (930)
Q Consensus 701 s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~k~ 779 (930)
+....++.+.. +..+++.+.+.++.+++|.+ |++|+++.+...+.++..+..++.+++..+...++ +++++|+
T Consensus 162 ~~~~~~l~~~~--~~~~~~~~~~~~~~~~~L~~----G~vDa~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ 235 (292)
T 1xt8_A 162 TTADAYFTQNY--PNIKTLKYDQNTETFAALMD----KRGDALSHDNTLLFAWVKDHPDFKMGIKELGNKDVIAPAVKKG 235 (292)
T ss_dssp SHHHHHHHHHC--TTSEEEEESSHHHHHHHHHT----TSSSEEEEEHHHHHHHHHHCTTEEEEEEEEEEEEEECCEEETT
T ss_pred CcHHHHHHHhC--CCceEEEcCCHHHHHHHHHc----CCccEEEecHHHHHHHHHhCCCeEEcccccccCceeEEEEeCC
Confidence 98888885533 34567788999999999999 99999999999999988877677777766666777 9999999
Q ss_pred Cc-chHHHHHHHHhhhhccchHHHHHHhcc
Q 002364 780 SP-LAVDLSSAILELAENGDLQRIHDKWLM 808 (930)
Q Consensus 780 sp-l~~~i~~~i~~l~e~G~~~~~~~~w~~ 808 (930)
+| +.+.+|++|.++.++|.+++|.++|+.
T Consensus 236 ~~~l~~~l~~~l~~l~~~g~~~~i~~k~~~ 265 (292)
T 1xt8_A 236 DKELKEFIDNLIIKLGQEQFFHKAYDETLK 265 (292)
T ss_dssp CHHHHHHHHHHHHHHHTTTHHHHHHHHHTG
T ss_pred CHHHHHHHHHHHHHHHhCcHHHHHHHHhcC
Confidence 98 999999999999999999999999998
No 70
>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-binding protein; 2.26A {Neisseria gonorrhoeae}
Probab=99.80 E-value=3.3e-19 Score=190.69 Aligned_cols=218 Identities=22% Similarity=0.348 Sum_probs=189.6
Q ss_pred CceeEEEecCCccccceeeeccCCcceEeeeHHHHHHHHHhC---CCcccEEEEecCCCCCCCCHHHHHHHHHcCcccEE
Q 002364 464 GKLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLL---PYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAV 540 (930)
Q Consensus 464 g~~lrv~~~~~~~~~p~~~~~~~~~~~~G~~~dl~~~l~~~l---~f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~D~~ 540 (930)
.++|||++.. +|+||.+.+. ++.+.|+++|+++.+++++ |++ ++++. ..|..++.+|.+|++|++
T Consensus 54 ~~~l~vg~~~--~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~~~~g~~--v~~~~-------~~~~~~~~~l~~G~~D~~ 121 (291)
T 2yjp_A 54 KGVIRIGVFG--DKPPFGYVDA-NGKNQGFDVEIAKDLAKDLLGSPDK--VEFVL-------TEAANRVEYVRSGKVDLI 121 (291)
T ss_dssp HTCEEEEECS--EETTTEEECT-TSCEESHHHHHHHHHHHHHHSCGGG--EEEEE-------CCGGGHHHHHHTTSCSEE
T ss_pred CCeEEEEEcC--CCCCceEECC-CCCEeehHHHHHHHHHHHhccCCce--EEEEE-------ccHHHHHHHHhCCCeeEE
Confidence 3579999974 7899998774 7899999999999999999 966 44444 238999999999999999
Q ss_pred EeeeeeecCceeeeeecccccccceEEEEeccCCCCCcceeeccCchhHHHHHHHHHHHHHHHhhhhhcccCCCCCCCcc
Q 002364 541 VGDITIVTNRTKIVDFSQPYAASGLVVVVPFRKLNTGAWAFLRPFSPLMWTVTACFFVVVGIVVWILEHRINDEFRGPPK 620 (930)
Q Consensus 541 ~~~~~~t~~r~~~vdft~p~~~~~~~~lv~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (930)
++++..+.+|.+.++|+.||.....++++++..
T Consensus 122 ~~~~~~~~~r~~~~~~~~p~~~~~~~l~~~~~~----------------------------------------------- 154 (291)
T 2yjp_A 122 LANFTQTPERAEAVDFADPYMKVALGVVSPKNK----------------------------------------------- 154 (291)
T ss_dssp CSSCBCCHHHHTTEEECCCCEEECEEEEEETTS-----------------------------------------------
T ss_pred EeCCCCChHHHccceeccCeeecceEEEEeCCC-----------------------------------------------
Confidence 888888999999999999999999999988654
Q ss_pred ccchhhhHHHHHHhhhcCcCcccccchhhhHHHHHHHHHhhhhhhhhhhheeeecccccCCCCChHHhhhCCCCeEEEeC
Q 002364 621 RQVITILWFSLSTLFFAHKENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLYSPINGIESLRKSDDPIGYQEG 700 (930)
Q Consensus 621 ~~~~~~~~~~~~~l~~~~~~~~~s~s~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~~v~~~~~ 700 (930)
.|++++||. |++||+..|
T Consensus 155 ------------------------------------------------------------~i~sl~dL~--gk~v~~~~g 172 (291)
T 2yjp_A 155 ------------------------------------------------------------PITDMAQLK--DQTLLVNKG 172 (291)
T ss_dssp ------------------------------------------------------------CCCSGGGGT--TSEEEEETT
T ss_pred ------------------------------------------------------------CCCCHHHhC--CCEEEEecC
Confidence 688999997 889999999
Q ss_pred chHHHHHHHhhccccccceecCCHHHHHHHHhcCCCCCceEEEEecchhHHHHHhcCccEEEeCccccccce-eeeeCCC
Q 002364 701 SFAEYYLSQELNISKSRLVALRTPEDYAKALKDGPGKGGVAAVVDERPYVELFLSSQCSFRIVGQEFTKSGW-GFAFPRD 779 (930)
Q Consensus 701 s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~k~ 779 (930)
+....++.+.. +..+++.+.+.++.+++|.+ |++|+++.+.+.+.++..+...+.++...+...++ +++++|+
T Consensus 173 ~~~~~~l~~~~--~~~~~~~~~~~~~~~~~l~~----G~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ 246 (291)
T 2yjp_A 173 TTADAFFTKSH--PEVKLLKFDQNTETFDALKD----GRGVALAHDNALLWAWAKENPNFEVAIGNLGPAEFIAPAVQKG 246 (291)
T ss_dssp SHHHHHHHHHC--TTSEEEEESSHHHHHHHHHT----TSSSEEEEEHHHHHHHHHHCTTEEEEECCSSSCEEECCEEETT
T ss_pred CcHHHHHHHhC--CCceEEEeCCHHHHHHHHHc----CCccEEEecHHHHHHHHHhCCCeEEcCCcccCCcceEEEEeCC
Confidence 98888885543 34567788899999999999 99999999999999888877678887777777777 9999999
Q ss_pred Cc-chHHHHHHHHhhhhccchHHHHHHhcc
Q 002364 780 SP-LAVDLSSAILELAENGDLQRIHDKWLM 808 (930)
Q Consensus 780 sp-l~~~i~~~i~~l~e~G~~~~~~~~w~~ 808 (930)
+| +.+.||++|.++.++|.+++|.++|+.
T Consensus 247 ~~~l~~~l~~al~~l~~~g~~~~i~~k~~~ 276 (291)
T 2yjp_A 247 NADLLNWVNGEIAAMKKDGRLKAAYEKTLL 276 (291)
T ss_dssp CHHHHHHHHHHHHHHHHHSHHHHHHHHHTH
T ss_pred CHHHHHHHHHHHHHHHhCChHHHHHHHhcc
Confidence 98 999999999999999999999999997
No 71
>2vha_A Periplasmic binding transport protein; periplasmic binding protein, ligand binding, ultrahigh resolution; HET: GLU; 1.00A {Shigella flexneri} PDB: 2ia4_A*
Probab=99.79 E-value=5.5e-19 Score=188.69 Aligned_cols=224 Identities=17% Similarity=0.279 Sum_probs=189.2
Q ss_pred CCceeEEEecCCccccceeeeccCCcceEeeeHHHHHHHHHh----CCC-cccEEEEecCCCCCCCCHHHHHHHHHcCcc
Q 002364 463 NGKLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNL----LPY-AVPYQFVAFGDGHKNPSYTQLVDSITTGVF 537 (930)
Q Consensus 463 ~g~~lrv~~~~~~~~~p~~~~~~~~~~~~G~~~dl~~~l~~~----l~f-~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~ 537 (930)
..++|+|++.. .|+||.+.+. ++++.|+++|+++++++. +|. .+++++++ ..|..++.++.+|++
T Consensus 15 ~~~~l~v~~~~--~~~P~~~~~~-~g~~~G~~~dl~~~ia~~l~~~~G~~~~~v~~~~-------~~~~~~~~~l~~g~~ 84 (287)
T 2vha_A 15 KNGVIVVGHRE--SSVPFSYYDN-QQKVVGYSQDYSNAIVEAVKKKLNKPDLQVKLIP-------ITSQNRIPLLQNGTF 84 (287)
T ss_dssp HHTEEEEEECS--EETTTEEECS-SSCEESHHHHHHHHHHHHHHHHTTCTTCEEEEEE-------CCTTTHHHHHHTTSC
T ss_pred hCCeEEEEEcC--CCCCceEECC-CCCcccccHHHHHHHHHHHHHhcCCCCceEEEEE-------CCHHHHHHHHHCCCe
Confidence 35689999975 7899998865 688999999999999976 562 13355554 348899999999999
Q ss_pred cEEEeeeeeecCceeeeeecccccccceEEEEeccCCCCCcceeeccCchhHHHHHHHHHHHHHHHhhhhhcccCCCCCC
Q 002364 538 DAVVGDITIVTNRTKIVDFSQPYAASGLVVVVPFRKLNTGAWAFLRPFSPLMWTVTACFFVVVGIVVWILEHRINDEFRG 617 (930)
Q Consensus 538 D~~~~~~~~t~~r~~~vdft~p~~~~~~~~lv~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~ 617 (930)
|++++++..+.+|.+.++||.||...+.++++++..
T Consensus 85 D~~~~~~~~t~~r~~~~~~s~p~~~~~~~l~~~~~~-------------------------------------------- 120 (287)
T 2vha_A 85 DFECGSTTNNVERQKQAAFSDTIFVVGTRLLTKKGG-------------------------------------------- 120 (287)
T ss_dssp SEECSSCBCCHHHHTTCEEEEEEEEEEEEEEEETTS--------------------------------------------
T ss_pred eEEeccccCCcchhhcccccceeeecceEEEEECCC--------------------------------------------
Confidence 999888888999999999999999999999998655
Q ss_pred CccccchhhhHHHHHHhhhcCcCcccccchhhhHHHHHHHHHhhhhhhhhhhheeeecccccCCCCChHHhhhCCCCeEE
Q 002364 618 PPKRQVITILWFSLSTLFFAHKENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLYSPINGIESLRKSDDPIGY 697 (930)
Q Consensus 618 ~~~~~~~~~~~~~~~~l~~~~~~~~~s~s~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~~v~~ 697 (930)
+|++++||. |++||+
T Consensus 121 ---------------------------------------------------------------~i~sl~dL~--g~~v~~ 135 (287)
T 2vha_A 121 ---------------------------------------------------------------DIKDFADLK--GKAVVV 135 (287)
T ss_dssp ---------------------------------------------------------------SCCSGGGGT--TCEEEE
T ss_pred ---------------------------------------------------------------CCCCHHHcC--CCEEEE
Confidence 578999997 888999
Q ss_pred EeCchHHHHHHHhhcc--ccccceecCCHHHHHHHHhcCCCCCceEEEEecchhHHHHHhcC---ccEEEeCccccccce
Q 002364 698 QEGSFAEYYLSQELNI--SKSRLVALRTPEDYAKALKDGPGKGGVAAVVDERPYVELFLSSQ---CSFRIVGQEFTKSGW 772 (930)
Q Consensus 698 ~~~s~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~i~~~~~~~~~~~~~---~~l~~~~~~~~~~~~ 772 (930)
..|+....++...... ...+++.+.+.++++++|.+ |++|+++.+...+.++..+. .++.+++..+...++
T Consensus 136 ~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~----G~vDa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (287)
T 2vha_A 136 TSGTTSEVLLNKLNEEQKMNMRIISAKDHGDSFRTLES----GRAVAFMMDDALLAGERAKAKKPDNWDIVGKPQSQEAY 211 (287)
T ss_dssp ETTSHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHT----TSCSEEEEEHHHHHHHHTTSSSGGGEEEESCCSCEEEE
T ss_pred eCCCcHHHHHHHHhhccCCCceEEEcCCHHHHHHHHHc----CCeeEEEeChHHHHHHHHhCCCCCceEecCCccccCce
Confidence 9999888777543311 23467788999999999999 99999999999888888763 368888877777789
Q ss_pred eeeeCCCCc-chHHHHHHHHhhhhccchHHHHHHhccc
Q 002364 773 GFAFPRDSP-LAVDLSSAILELAENGDLQRIHDKWLMK 809 (930)
Q Consensus 773 ~~~~~k~sp-l~~~i~~~i~~l~e~G~~~~~~~~w~~~ 809 (930)
+++++|++| ++..||++|.++.++|.++++.++|+..
T Consensus 212 ~~~~~k~~~~l~~~l~~~l~~l~~~g~~~~i~~k~~~~ 249 (287)
T 2vha_A 212 GCMLRKDDPQFKKLMDDTIAQVQTSGEAEKWFDKWFKN 249 (287)
T ss_dssp EEEECTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHS
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHhCchHHHHHHHHcCC
Confidence 999999988 9999999999999999999999999984
No 72
>2yln_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-BIND protein; HET: CYS GOL; 1.12A {Neisseria gonorrhoeae} PDB: 3zsf_A
Probab=99.79 E-value=4.7e-19 Score=188.62 Aligned_cols=217 Identities=20% Similarity=0.301 Sum_probs=187.5
Q ss_pred CceeEEEecCCccccceeeeccCCcceEeeeHHHHHHHHHhCCCcccEEEEecCCCCCCCCHHHHHHHHHcCcccEEEee
Q 002364 464 GKLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGD 543 (930)
Q Consensus 464 g~~lrv~~~~~~~~~p~~~~~~~~~~~~G~~~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~D~~~~~ 543 (930)
.++|+|++.. +|+||.+.+. ++.+.|+++|+++.+++++|++++ ++. ..|..++.+|.+|++|++++.
T Consensus 56 ~~~l~v~~~~--~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~G~~v~--~~~-------~~~~~~~~~l~~G~~D~~~~~ 123 (283)
T 2yln_A 56 KGTVTVGTEG--TYAPFTYHDK-DGKLTGYDVEVTRAVAEKLGVKVE--FKE-------TQWDSMMAGLKAGRFDVVANQ 123 (283)
T ss_dssp TCEEEEEECS--EETTTEEECT-TSCEESHHHHHHHHHHHHHTCEEE--EEE-------CCGGGHHHHHHHTSCSEECSS
T ss_pred CCeEEEEECC--CCCCeeEECC-CCCEeeehHHHHHHHHHHcCCceE--EEE-------CCHHHHHHHHHCCCcCEEEec
Confidence 4679999985 6899998874 788999999999999999996644 444 239999999999999999887
Q ss_pred eee-ecCceeeeeecccccccceEEEEeccCCCCCcceeeccCchhHHHHHHHHHHHHHHHhhhhhcccCCCCCCCcccc
Q 002364 544 ITI-VTNRTKIVDFSQPYAASGLVVVVPFRKLNTGAWAFLRPFSPLMWTVTACFFVVVGIVVWILEHRINDEFRGPPKRQ 622 (930)
Q Consensus 544 ~~~-t~~r~~~vdft~p~~~~~~~~lv~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 622 (930)
+.. +.+|.+.++|+.||......+++++..
T Consensus 124 ~~~~t~~r~~~~~~~~p~~~~~~~l~~~~~~------------------------------------------------- 154 (283)
T 2yln_A 124 VGLTSPERQATFDKSEPYSWSGAVLVAHNDS------------------------------------------------- 154 (283)
T ss_dssp CCCCSHHHHHHEEECSCSEEECEEEEEETTC-------------------------------------------------
T ss_pred CccCChhhhcceEeccCeeeecEEEEEECCC-------------------------------------------------
Confidence 877 899999999999999999999998765
Q ss_pred chhhhHHHHHHhhhcCcCcccccchhhhHHHHHHHHHhhhhhhhhhhheeeecccccCCCCChHHhhhCCCCeEEEeCch
Q 002364 623 VITILWFSLSTLFFAHKENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLYSPINGIESLRKSDDPIGYQEGSF 702 (930)
Q Consensus 623 ~~~~~~~~~~~l~~~~~~~~~s~s~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~~v~~~~~s~ 702 (930)
+|++++||. |++|++..|+.
T Consensus 155 ----------------------------------------------------------~i~s~~dL~--G~~v~v~~g~~ 174 (283)
T 2yln_A 155 ----------------------------------------------------------NIKSIADIK--GVKTAQSLTSN 174 (283)
T ss_dssp ----------------------------------------------------------SCCSGGGCT--TSEEEECTTSH
T ss_pred ----------------------------------------------------------CCCCHHHhC--CCEEEEecCch
Confidence 488999996 88999999998
Q ss_pred HHHHHHHhhccccccceecCCHHHHHHHHhcCCCCCceEEEEecchhHHHHHhcCc--cEEEeC-cccc-ccceeeeeCC
Q 002364 703 AEYYLSQELNISKSRLVALRTPEDYAKALKDGPGKGGVAAVVDERPYVELFLSSQC--SFRIVG-QEFT-KSGWGFAFPR 778 (930)
Q Consensus 703 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~i~~~~~~~~~~~~~~--~l~~~~-~~~~-~~~~~~~~~k 778 (930)
...++.+ .+ .+++.+.+..+.+++|.+ |++|+++.+...+.+++.+.. ++.+++ ..+. ...++++++|
T Consensus 175 ~~~~l~~-~~---~~~~~~~~~~~~~~~l~~----g~vDa~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~k 246 (283)
T 2yln_A 175 YGEKAKA-AG---AQLVPVDGLAQSLTLIEQ----KRADATLNDELAVLDYLKKNPNAGVKIVWSAPADEKVGSGLIVNK 246 (283)
T ss_dssp HHHHHHH-TT---CEEEECSSHHHHHHHHHT----TSCCEEEEEHHHHHHHHHHSTTSSEEEEEECCGGGCEEECCEEES
T ss_pred HHHHHHH-cC---CeEEEeCCHHHHHHHHHc----CCCCEEEecHHHHHHHHHhCCCCcEEEccCcccCCcccEEEEEeC
Confidence 8888744 32 457778899999999999 999999999999988877654 488887 6666 6788999999
Q ss_pred CCc-chHHHHHHHHhhhhccchHHHHHHhccc
Q 002364 779 DSP-LAVDLSSAILELAENGDLQRIHDKWLMK 809 (930)
Q Consensus 779 ~sp-l~~~i~~~i~~l~e~G~~~~~~~~w~~~ 809 (930)
++| +.+.||++|.++.++|.+++|.++|+..
T Consensus 247 ~~~~l~~~i~~al~~l~~~g~~~~i~~k~~~~ 278 (283)
T 2yln_A 247 GNDEAVAKFSTAINELKADGTLKKLGEQFFGK 278 (283)
T ss_dssp SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHSS
T ss_pred CCHHHHHHHHHHHHHHHHCCcHHHHHHHHcCC
Confidence 988 9999999999999999999999999983
No 73
>2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate, transport, ABC transport, virulence factor, receptor; 1.49A {Campylobacter jejuni}
Probab=99.70 E-value=3e-17 Score=172.10 Aligned_cols=215 Identities=19% Similarity=0.315 Sum_probs=178.9
Q ss_pred CceeEEEecCCccccceeeeccCCcceEeeeHHHHHHHHHhC---CCcccEEEEecCCCCCCCCHHHHHHHHHcCcccEE
Q 002364 464 GKLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLL---PYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAV 540 (930)
Q Consensus 464 g~~lrv~~~~~~~~~p~~~~~~~~~~~~G~~~dl~~~l~~~l---~f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~D~~ 540 (930)
.++||||+.. +++||.+.+..++.+.|+++|+++.+++++ |++++ ++. ..|.+++..|.+|++|++
T Consensus 37 ~~~l~vg~~~--~~~p~~~~~~~~g~~~G~~~~l~~~~~~~~~~pg~~v~--~~~-------~~~~~~~~~l~~g~~D~~ 105 (259)
T 2v25_A 37 KGQLIVGVKN--DVPHYALLDQATGEIKGFEVDVAKLLAKSILGDDKKIK--LVA-------VNAKTRGPLLDNGSVDAV 105 (259)
T ss_dssp HTCEEEEECS--EETTTEEEETTTTEEESHHHHHHHHHHHHHHSCTTSEE--EEE-------CCTTTHHHHHHTTSCSEE
T ss_pred CCeEEEEECC--CCCCeEEEECCCCeEEEeeHHHHHHHHHHhcCCCcceE--EEE-------cCHHHHHHHHhCCCCCEE
Confidence 4579999975 788998876347889999999999999999 96644 444 348999999999999999
Q ss_pred EeeeeeecCceeeeeecccccccceEEEEeccCCCCCcceeeccCchhHHHHHHHHHHHHHHHhhhhhcccCCCCCCCcc
Q 002364 541 VGDITIVTNRTKIVDFSQPYAASGLVVVVPFRKLNTGAWAFLRPFSPLMWTVTACFFVVVGIVVWILEHRINDEFRGPPK 620 (930)
Q Consensus 541 ~~~~~~t~~r~~~vdft~p~~~~~~~~lv~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (930)
++++..+.+|.+.++|+.||.....++++++..
T Consensus 106 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~----------------------------------------------- 138 (259)
T 2v25_A 106 IATFTITPERKRIYNFSEPYYQDAIGLLVLKEK----------------------------------------------- 138 (259)
T ss_dssp CSSCBCCHHHHTTEEECSCSEEEEEEEEEEGGG-----------------------------------------------
T ss_pred EecCccCHHHHhcCcccccceeCceEEEEeCCC-----------------------------------------------
Confidence 887888889999999999999999999998754
Q ss_pred ccchhhhHHHHHHhhhcCcCcccccchhhhHHHHHHHHHhhhhhhhhhhheeeecccccCCCCChHHhhhCCCCeEEEeC
Q 002364 621 RQVITILWFSLSTLFFAHKENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLYSPINGIESLRKSDDPIGYQEG 700 (930)
Q Consensus 621 ~~~~~~~~~~~~~l~~~~~~~~~s~s~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~~v~~~~~ 700 (930)
++++++||. ++++++..|
T Consensus 139 ------------------------------------------------------------~i~~~~dL~--g~~i~~~~g 156 (259)
T 2v25_A 139 ------------------------------------------------------------KYKSLADMK--GANIGVAQA 156 (259)
T ss_dssp ------------------------------------------------------------CCCSGGGCT--TCEEEEETT
T ss_pred ------------------------------------------------------------CCCCHHHhC--CCEEEEecC
Confidence 578899997 888999988
Q ss_pred chHHHHHHHhh---ccccccceecCCHHHHHHHHhcCCCCCceEEEEecchhHHHHHhcCccEEEeCccccccceeeeeC
Q 002364 701 SFAEYYLSQEL---NISKSRLVALRTPEDYAKALKDGPGKGGVAAVVDERPYVELFLSSQCSFRIVGQEFTKSGWGFAFP 777 (930)
Q Consensus 701 s~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 777 (930)
+....++.+.. +. ..+++.+.+.++.+++|.. |++|+++.+.....++..+..+ +++..+...+++++++
T Consensus 157 ~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~l~~----g~vDa~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 229 (259)
T 2v25_A 157 ATTKKAIGEAAKKIGI-DVKFSEFPDYPSIKAALDA----KRVDAFSVDKSILLGYVDDKSE--ILPDSFEPQSYGIVTK 229 (259)
T ss_dssp CSHHHHHHHHHHHTTC-CCEEEEESSHHHHHHHHHT----TSSSEEEEEHHHHTTTCCTTEE--ECSCCCSEEEECCEEE
T ss_pred CchHHHHHHHHHhcCC-ceeEEEeCCHHHHHHHHHc----CCCcEEEecHHHHHHHHHhCCC--ccccccccceeEEEEc
Confidence 87777664432 22 1256678899999999999 9999999998888887776554 5566666677899999
Q ss_pred CCCc-chHHHHHHHHhhhhccchHHHHHHhc
Q 002364 778 RDSP-LAVDLSSAILELAENGDLQRIHDKWL 807 (930)
Q Consensus 778 k~sp-l~~~i~~~i~~l~e~G~~~~~~~~w~ 807 (930)
|++| +.+.+|++|.++.++ ++++.++|.
T Consensus 230 k~~~~l~~~~~~~l~~~~~~--~~~i~~k~~ 258 (259)
T 2v25_A 230 KDDPAFAKYVDDFVKEHKNE--IDALAKKWG 258 (259)
T ss_dssp TTCHHHHHHHHHHHHHTHHH--HHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHHH--HHHHHHHhC
Confidence 9996 999999999999999 999999984
No 74
>3n5l_A Binding protein component of ABC phosphonate TRAN; structural genomics, joint center for structural genomics; HET: UNL; 1.97A {Pseudomonas aeruginosa}
Probab=98.75 E-value=2.2e-08 Score=106.78 Aligned_cols=215 Identities=13% Similarity=0.097 Sum_probs=143.3
Q ss_pred CceeEEEecCCccccceeeeccCCcceEeeeHHHHHHHHHhCCCcccEEEEecCCCCCCCCHHHHHHHHHcCcccEEEee
Q 002364 464 GKLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGD 543 (930)
Q Consensus 464 g~~lrv~~~~~~~~~p~~~~~~~~~~~~G~~~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~D~~~~~ 543 (930)
.++||||+.. .+.|+..... ..+|++.|++++|.+ ++++.. .+|++++..|..|++|+++.+
T Consensus 3 ~~~l~iG~~p--~~~p~~~~~~--------~~~l~~~l~k~lG~~--ve~~~~------~~~~~~i~al~~G~vDi~~~~ 64 (310)
T 3n5l_A 3 QPVINFGIIS--TESSQNLKSI--------WEPFLKDMSQQTGYQ--VKAFFA------PDYAGIIQGMRFDKVDIAWYG 64 (310)
T ss_dssp CCEEEEEECC--SSCHHHHHHH--------HHHHHHHHHHHHSSE--EEEECC------SSHHHHHHHHHTTSCSEEECC
T ss_pred CcEEEEEEec--CCCHHHHHHH--------HHHHHHHHHHHhCCC--EEEEeC------CCHHHHHHHHHcCCCCEEEEC
Confidence 3679999996 5666554331 248999999999965 555432 569999999999999999754
Q ss_pred -eeeec--Cceeeeeecccccc-----cceEEEEeccCCCCCcceeeccCchhHHHHHHHHHHHHHHHhhhhhcccCCCC
Q 002364 544 -ITIVT--NRTKIVDFSQPYAA-----SGLVVVVPFRKLNTGAWAFLRPFSPLMWTVTACFFVVVGIVVWILEHRINDEF 615 (930)
Q Consensus 544 -~~~t~--~r~~~vdft~p~~~-----~~~~~lv~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~~~~~~~~~~~~~~ 615 (930)
..... +|.....|..++.. ...+++|++.
T Consensus 65 ~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~~lvv~~d------------------------------------------- 101 (310)
T 3n5l_A 65 NKAAMEAVDRAHGEIFAQTVAASGAPGYWSLLIANKD------------------------------------------- 101 (310)
T ss_dssp HHHHHHHHHHSCEEEEEEEEETTCCSEEEEEEEEETT-------------------------------------------
T ss_pred cHHHHHHHHhcCCeEEEEEeccCCCcceEEEEEEECC-------------------------------------------
Confidence 33222 23333344433210 1234555543
Q ss_pred CCCccccchhhhHHHHHHhhhcCcCcccccchhhhHHHHHHHHHhhhhhhhhhhheeeecccccCCCCChHHhhh--CCC
Q 002364 616 RGPPKRQVITILWFSLSTLFFAHKENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLYSPINGIESLRK--SDD 693 (930)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~s~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~--~~~ 693 (930)
.+|++++||.+ .++
T Consensus 102 ----------------------------------------------------------------s~i~sl~DL~~~~kgk 117 (310)
T 3n5l_A 102 ----------------------------------------------------------------SKIDSLEDMLANAKSL 117 (310)
T ss_dssp ----------------------------------------------------------------CSCCSHHHHHHTGGGC
T ss_pred ----------------------------------------------------------------CCCCCHHHHhhhcCCC
Confidence 47999999932 367
Q ss_pred CeEEE-eCchHH----HH-HHHhhcccc---ccceecCCHHHHHHHHhcCCCCCceEEEEecchhHHHHHhcC----ccE
Q 002364 694 PIGYQ-EGSFAE----YY-LSQELNISK---SRLVALRTPEDYAKALKDGPGKGGVAAVVDERPYVELFLSSQ----CSF 760 (930)
Q Consensus 694 ~v~~~-~~s~~~----~~-l~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~g~~~a~i~~~~~~~~~~~~~----~~l 760 (930)
++++. .++... .+ +.+..+... -+.+...+..+.+.+|.. |++|+.+.+...+.++..+. .++
T Consensus 118 ~ia~~~~gs~~~~l~~~~~l~~~~Gi~~~~~~~~v~~g~~~~~~~al~~----G~vDa~~~~~~~~~~~~~~~~~~~~~l 193 (310)
T 3n5l_A 118 TFGNGDPNSTSGYLVPGYYVFAKNNVDPVKAFKRTLNSSHEVNALAVAN----KQVDVATFNTEGMERLELTQPEKARQL 193 (310)
T ss_dssp EEEECCTTCTTTTHHHHHHTTTTTTCCHHHHSSEEEECCHHHHHHHHHT----TSSSEEEEEHHHHHHHHHHCHHHHTTE
T ss_pred EEEecCCCccHhHHHHHHHHHHHcCCChHHhccccccCCHHHHHHHHHc----CCccEEEecchhHHHHHHhCccchhCE
Confidence 78864 333221 21 222333332 123334677788999999 99999999988888777654 357
Q ss_pred EEeCccccccceeeeeCCCCc--chHHHHHHHHhhhhccchHHHHHHhc
Q 002364 761 RIVGQEFTKSGWGFAFPRDSP--LAVDLSSAILELAENGDLQRIHDKWL 807 (930)
Q Consensus 761 ~~~~~~~~~~~~~~~~~k~sp--l~~~i~~~i~~l~e~G~~~~~~~~w~ 807 (930)
.++........++++++++.| +++.++.+|.++.++|..+++.++|-
T Consensus 194 rvl~~s~~~p~~~i~~~~~~~~~l~~~l~~al~~~~~d~~~~~~l~~~g 242 (310)
T 3n5l_A 194 KVIWKSPLIPGDPLVWRNNLSDEQKNKLRDFFFKYGANAEQKKVLADLQ 242 (310)
T ss_dssp EEEEEEEEEECCEEEEETTSCHHHHHHHHHHHHHCCCSHHHHHHHHHTT
T ss_pred EEEEECCCCCCCcEEEECCCCHHHHHHHHHHHHhcCCChhHHHHHHhcC
Confidence 766544333457899999954 99999999999999998888887763
No 75
>2ozz_A Hypothetical protein YHFZ; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; 2.30A {Shigella flexneri 2A} SCOP: c.94.1.1
Probab=98.69 E-value=4.8e-08 Score=96.73 Aligned_cols=169 Identities=9% Similarity=0.080 Sum_probs=125.1
Q ss_pred CcceEeeeHHHHHHHHHhCCCcccEEEEecCCCCCCCCHHHHHHHHHcCcccEEEeeeeeecC------ceeeeeecccc
Q 002364 487 SDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGDITIVTN------RTKIVDFSQPY 560 (930)
Q Consensus 487 ~~~~~G~~~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~t~~------r~~~vdft~p~ 560 (930)
+.+|.|+.--|.+.+. |+++++.+. ..|++.+..|++|++|+++.++..+++ |...+|||.||
T Consensus 27 s~~yeGlatgl~~~f~---gi~~~i~~m--------rg~~~RI~aL~~gk~D~aI~S~~aa~e~~~~~~r~~~vdFg~~y 95 (231)
T 2ozz_A 27 TRLYEGLASGLKAQFD---GIPFYYAHM--------RGADIRVECLLNGVYDMAVVSRLAAESYLSQNNLCIALELGPHT 95 (231)
T ss_dssp SHHHHHHHHHHHHTTT---TSCEEEEEC--------SCHHHHHHHHHTTSCSEEEEEHHHHHHHHHHSCEEEEEECCTTS
T ss_pred hhhhhHHHHHHHHHhc---CCcEEEEEc--------cChHHHHHHHHcCCCCEEEEecccchhhhcccCeEEEEEcCCCc
Confidence 4567898888877774 755444444 159999999999999999999999999 99999999999
Q ss_pred cccceEEEEeccCCCCCcceeeccCchhHHHHHHHHHHHHHHHhhhhhcccCCCCCCCccccchhhhHHHHHHhhhcCcC
Q 002364 561 AASGLVVVVPFRKLNTGAWAFLRPFSPLMWTVTACFFVVVGIVVWILEHRINDEFRGPPKRQVITILWFSLSTLFFAHKE 640 (930)
Q Consensus 561 ~~~~~~~lv~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 640 (930)
+.+.-.+++++...
T Consensus 96 Yv~~h~li~~~~~~------------------------------------------------------------------ 109 (231)
T 2ozz_A 96 YVGEHQLICRKGES------------------------------------------------------------------ 109 (231)
T ss_dssp SSCCEEEEEETTCG------------------------------------------------------------------
T ss_pred cccCeEEEEeCCCc------------------------------------------------------------------
Confidence 98777788776550
Q ss_pred cccccchhhhHHHHHHHHHhhhhhhhhhhheeeecccccCCCCChHHhhhCCCCeEEEeCchHHHHHHHhhcccccccee
Q 002364 641 NTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLYSPINGIESLRKSDDPIGYQEGSFAEYYLSQELNISKSRLVA 720 (930)
Q Consensus 641 ~~~s~s~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~ 720 (930)
..| ++||+..||..+..+.+..- ....+..
T Consensus 110 ---------------------------------------~~i----------krVGvd~gS~dq~~lt~~~~-~g~~Ve~ 139 (231)
T 2ozz_A 110 ---------------------------------------GNV----------KRVGLDSRSADQKIMTDVFF-GDSDVER 139 (231)
T ss_dssp ---------------------------------------GGC----------CEEEECTTCHHHHHHHHHHH-TTSCCEE
T ss_pred ---------------------------------------ccc----------EEEEecCCChhHHHHHhhhc-CCCeEEE
Confidence 112 57999999988888755332 4455666
Q ss_pred c-CCHHHHHHHHhcCCCCCceEEEEe--cchhHHHHHhcCccEEE--eCc---cccccceeeeeCCCCc-chHHHHHHH
Q 002364 721 L-RTPEDYAKALKDGPGKGGVAAVVD--ERPYVELFLSSQCSFRI--VGQ---EFTKSGWGFAFPRDSP-LAVDLSSAI 790 (930)
Q Consensus 721 ~-~~~~~~~~~l~~~~~~g~~~a~i~--~~~~~~~~~~~~~~l~~--~~~---~~~~~~~~~~~~k~sp-l~~~i~~~i 790 (930)
+ .+..++++++.+ |++||++. +.+... ...++.. +.. ........++++||++ +++.+|+.|
T Consensus 140 ve~~y~~~i~~L~~----G~IDA~Iwn~d~~~a~----~~~~l~~~~l~~~~~~~~~~eavI~v~k~n~~L~~~ln~~I 210 (231)
T 2ozz_A 140 VDLSYHESLQRIVK----GDVDAVIWNVVAENEL----TMLGLEATPLTDDPRFLQATEAVVLTRVDDYPMQQLLRAVV 210 (231)
T ss_dssp EECCHHHHHHHHHH----TSCCEEEEEC-CHHHH----HHTTEEEEECCSCHHHHHTTCEEEEEETTCHHHHHHHHHHC
T ss_pred EECCHHHHHHHHHc----CCccEEEEcCcchhhh----cCCCcceeccccccccccCCceEEEEECCCHHHHHHHHHHh
Confidence 7 788999999999 99999999 666554 1223332 222 2234456688999975 888888776
No 76
>3p7i_A PHND, subunit of alkylphosphonate ABC transporter; phosphonate binding protein, transport protein; 1.71A {Escherichia coli UTI89} PDB: 3qk6_A 3quj_A* 3s4u_A
Probab=98.69 E-value=7.3e-08 Score=103.04 Aligned_cols=216 Identities=15% Similarity=0.147 Sum_probs=141.1
Q ss_pred CCceeEEEecCCccccceeeeccCCcceEeeeHHHHHHHHHhCCCcccEEEEecCCCCCCCCHHHHHHHHHcCcccEEEe
Q 002364 463 NGKLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVG 542 (930)
Q Consensus 463 ~g~~lrv~~~~~~~~~p~~~~~~~~~~~~G~~~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~D~~~~ 542 (930)
..++|+||+.. .+.|.... ...-+|++.|++++|.+ ++++. ..+|++++..|..|++|+++.
T Consensus 12 ~~~~l~~Gv~p--~~~~~~~~--------~~~~~l~~~L~k~lG~~--ve~~~------~~~~~~~i~aL~~G~vDia~~ 73 (321)
T 3p7i_A 12 QEKALNFGIIS--TESQQNLK--------PQWTPFLQDMEKKLGVK--VNAFF------APDYAGIIQGMRFNKVDIAWY 73 (321)
T ss_dssp --CCEEEEECC--SSCHHHHH--------HHHHHHHHHHHHHHTSC--EEEEC------CSSHHHHHHHHHTTSCSEEEC
T ss_pred cCCcEEEEEec--CCCHHHHH--------HHHHHHHHHHHHHHCCC--EEEEe------cCCHHHHHHHHHcCCCcEEEE
Confidence 45789999995 34443322 22347999999999965 55543 256999999999999999974
Q ss_pred -eeeeecC--ceeeeeeccccc-----ccceEEEEeccCCCCCcceeeccCchhHHHHHHHHHHHHHHHhhhhhcccCCC
Q 002364 543 -DITIVTN--RTKIVDFSQPYA-----ASGLVVVVPFRKLNTGAWAFLRPFSPLMWTVTACFFVVVGIVVWILEHRINDE 614 (930)
Q Consensus 543 -~~~~t~~--r~~~vdft~p~~-----~~~~~~lv~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~~~~~~~~~~~~~ 614 (930)
+...+.. |.....|..|+. ....+++|++.
T Consensus 74 ~~~~~~~~~~~~~~~~~a~~~~~~g~~~y~~~lvv~~d------------------------------------------ 111 (321)
T 3p7i_A 74 GNLSAMEAVDRANGQVFAQTVAADGSPGYWSVLIVNKD------------------------------------------ 111 (321)
T ss_dssp CHHHHHHHHHHSCEEEEEEEEETTCCSSBCEEEEEETT------------------------------------------
T ss_pred ChHHHHHHHHhcCCEEEEEEeccCCCcceEEEEEEECC------------------------------------------
Confidence 3444432 333333443321 01235555543
Q ss_pred CCCCccccchhhhHHHHHHhhhcCcCcccccchhhhHHHHHHHHHhhhhhhhhhhheeeecccccCCCCChHHhhh--CC
Q 002364 615 FRGPPKRQVITILWFSLSTLFFAHKENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLYSPINGIESLRK--SD 692 (930)
Q Consensus 615 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~s~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~--~~ 692 (930)
.+|++++||.+ .+
T Consensus 112 -----------------------------------------------------------------s~i~sl~DL~~~~kg 126 (321)
T 3p7i_A 112 -----------------------------------------------------------------SPINNLNDLLAKRKD 126 (321)
T ss_dssp -----------------------------------------------------------------CSCCSHHHHHHTGGG
T ss_pred -----------------------------------------------------------------CCCCCHHHHHhhcCC
Confidence 47999999932 26
Q ss_pred CCeEEE-eCchH----HHH-HHHhhcccccc--ceecCCHHHHHHHHhcCCCCCceEEEEecchhHHHHHhcC----ccE
Q 002364 693 DPIGYQ-EGSFA----EYY-LSQELNISKSR--LVALRTPEDYAKALKDGPGKGGVAAVVDERPYVELFLSSQ----CSF 760 (930)
Q Consensus 693 ~~v~~~-~~s~~----~~~-l~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~g~~~a~i~~~~~~~~~~~~~----~~l 760 (930)
+++++. .++.. ... +....+..... .+.+.+..+.+.+|.. |++|+.+.+...+..+..+. .++
T Consensus 127 k~va~~~~gsts~~l~~~~~l~~~~Gi~~~~~~~v~~~~~~~a~~al~~----G~vDa~~~~~~~~~~~~~~~p~~~~~l 202 (321)
T 3p7i_A 127 LTFGNGDPNSTSGFLVPGYYVFAKNNISASDFKRTVNAGHETNALAVAN----KQVDVATNNTENLDKLKTSAPEKLKEL 202 (321)
T ss_dssp CEEEECCTTCTTTTHHHHHHTTGGGTCCGGGSSEEEECCHHHHHHHHHT----TSSSEEEEEHHHHHTHHHHCHHHHTTE
T ss_pred CEEEeCCCCccHHHHHHHHHHHHHcCCChhHceeeecCCHHHHHHHHHC----CCceEEEechHHHHHHHHhCcchhccE
Confidence 678763 33322 122 22333333222 2345677889999999 99999999888877776643 357
Q ss_pred EEeCccccccceeeeeCCCCc--chHHHHHHHHhhhhccchHHHHHHhc
Q 002364 761 RIVGQEFTKSGWGFAFPRDSP--LAVDLSSAILELAENGDLQRIHDKWL 807 (930)
Q Consensus 761 ~~~~~~~~~~~~~~~~~k~sp--l~~~i~~~i~~l~e~G~~~~~~~~w~ 807 (930)
.++........++++++|+-| +++.|+.+|.++.++|..+++.+++-
T Consensus 203 rvl~~s~~~p~~~i~~~k~~~~~l~~~l~~aL~~~~~d~~~~~~l~~~g 251 (321)
T 3p7i_A 203 KVIWKSPLIPGDPIVWRKNLSETTKDKIYDFFMNYGKTPEEKAVLERLG 251 (321)
T ss_dssp EEEEECSCBCCCEEEEETTSCHHHHHHHHHHHHHTTCSHHHHHHHHHHT
T ss_pred EEEEEcCCCCCCceeeeCCCCHHHHHHHHHHHHhcCCCHHHHHHHHhcC
Confidence 777644334457899999954 99999999999999998888777653
No 77
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=98.42 E-value=1.8e-05 Score=84.63 Aligned_cols=208 Identities=11% Similarity=0.035 Sum_probs=136.7
Q ss_pred EEEEEEeeCCCcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEc-CCChhHHH
Q 002364 32 VNVGALFTLDSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIG-PQCSTVAH 110 (930)
Q Consensus 32 i~IG~i~~~s~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiG-p~~s~~~~ 110 (930)
++||++.|....+......+++.++++. |+++.+.. .+..++.........++.++|.+||. |..+....
T Consensus 2 ~~Ig~i~~~~~~~~~~~~~gi~~~~~~~--------g~~~~~~~-~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~ 72 (313)
T 2h3h_A 2 LTIGVIGKSVHPYWSQVEQGVKAAGKAL--------GVDTKFFV-PQKEDINAQLQMLESFIAEGVNGIAIAPSDPTAVI 72 (313)
T ss_dssp CEEEEECSCSSHHHHHHHHHHHHHHHHH--------TCEEEEEC-CSSSCHHHHHHHHHHHHHTTCSEEEECCSSTTTTH
T ss_pred eEEEEEeCCCcHHHHHHHHHHHHHHHHc--------CCEEEEEC-CCCCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHH
Confidence 5799999865334456667777777763 45554432 23567777777788888888988874 44444333
Q ss_pred HHHHhhccCCCcEEecccCCCCCCCCCCCceEeecCCchHHHHHHHHHHHhc--CccEEEEEEEc--CccccchHHHHHH
Q 002364 111 IVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYY--GWNAVSVIFVD--NEYGRNGVSALND 186 (930)
Q Consensus 111 ~v~~~~~~~~iP~is~~a~~~~l~~~~~p~~~r~~p~~~~~~~ai~~~l~~~--~w~~v~ii~~d--~~~g~~~~~~l~~ 186 (930)
.....+...++|+|.+....+. .+.+..+.+++...+..++++|... |.++++++..+ ........+.+++
T Consensus 73 ~~~~~~~~~~iPvV~~~~~~~~-----~~~~~~V~~d~~~~g~~a~~~L~~~~~G~~~I~~i~~~~~~~~~~~R~~gf~~ 147 (313)
T 2h3h_A 73 PTIKKALEMGIPVVTLDTDSPD-----SGRYVYIGTDNYQAGYTAGLIMKELLGGKGKVVIGTGSLTAMNSLQRIQGFKD 147 (313)
T ss_dssp HHHHHHHHTTCCEEEESSCCTT-----SCCSCEEECCHHHHHHHHHHHHHHHHTSCSEEEEEESCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCeEEEeCCCCCC-----cceeEEECcCHHHHHHHHHHHHHHHcCCCCEEEEEECCCCCccHHHHHHHHHH
Confidence 4455566789999987543321 1234456678888888889988776 89999999854 3345566788999
Q ss_pred HHhhcceEEEEEEecCCCCCCChhHHHHHHHHHHhC--CceEEEEEcChhhHHHHHHHHHHcCcccCCeEEEEeC
Q 002364 187 KLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALM--ESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATD 259 (930)
Q Consensus 187 ~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viil~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~ 259 (930)
++++.|+++....... .+..+....+.++.+. ++++|+. .+...+..+++++++.|. ..+...++.|
T Consensus 148 ~l~~~g~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~a~g~~~al~~~G~-p~dv~vvg~d 216 (313)
T 2h3h_A 148 AIKDSEIEIVDILNDE----EDGARAVSLAEAALNAHPDLDAFFG-VYAYNGPAQALVVKNAGK-VGKVKIVCFD 216 (313)
T ss_dssp HHTTSSCEEEEEEECS----SCHHHHHHHHHHHHHHCTTCCEEEE-CSTTHHHHHHHHHHHTTC-TTTSEEEEEC
T ss_pred HhcCCCCEEEEeecCC----CCHHHHHHHHHHHHHHCcCceEEEE-cCCCccHHHHHHHHHcCC-CCCeEEEEeC
Confidence 9999998876433222 2345555566666543 4566665 445677789999999994 3334445443
No 78
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=98.39 E-value=1.4e-05 Score=83.64 Aligned_cols=209 Identities=10% Similarity=0.007 Sum_probs=141.0
Q ss_pred EEEEEEeeCC-CcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCChHHHHHHHHHHHhcC-cEEEEcCC-ChhH
Q 002364 32 VNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETD-IVAIIGPQ-CSTV 108 (930)
Q Consensus 32 i~IG~i~~~s-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~-v~aiiGp~-~s~~ 108 (930)
++||++.|.. .++-.....+++.+.++. |+++.+...++..++....+....++.++ +.+||-.. .+..
T Consensus 1 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~--------g~~~~~~~~~~~~~~~~~~~~i~~l~~~~~vdgii~~~~~~~~ 72 (276)
T 3ksm_A 1 PKLLLVLKGDSNAYWRQVYLGAQKAADEA--------GVTLLHRSTKDDGDIAGQIQILSYHLSQAPPDALILAPNSAED 72 (276)
T ss_dssp CEEEEECSCSSSTHHHHHHHHHHHHHHHH--------TCEEEECCCSSTTCHHHHHHHHHHHHHHSCCSEEEECCSSTTT
T ss_pred CeEEEEeCCCCChHHHHHHHHHHHHHHHc--------CCEEEEECCCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCHHH
Confidence 4799999854 444456667777777763 56666655556778888888888888888 99988543 3444
Q ss_pred HHHHHHhhccCCCcEEecccCCCCCCCCCCCceEeecCCchHHHHHHHHHHHhc----CccEEEEEEEc--CccccchHH
Q 002364 109 AHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYY----GWNAVSVIFVD--NEYGRNGVS 182 (930)
Q Consensus 109 ~~~v~~~~~~~~iP~is~~a~~~~l~~~~~p~~~r~~p~~~~~~~ai~~~l~~~----~w~~v~ii~~d--~~~g~~~~~ 182 (930)
.......+.+.++|+|......+. .+.+..+.+++...+..+++++... |-++++++..+ ......-.+
T Consensus 73 ~~~~~~~~~~~~ipvV~~~~~~~~-----~~~~~~V~~d~~~~g~~~~~~l~~~~~~~G~~~i~~i~~~~~~~~~~~R~~ 147 (276)
T 3ksm_A 73 LTPSVAQYRARNIPVLVVDSDLAG-----DAHQGLVATDNYAAGQLAARALLATLDLSKERNIALLRLRAGNASTDQREQ 147 (276)
T ss_dssp THHHHHHHHHTTCCEEEESSCCSS-----SCSSEEEECCHHHHHHHHHHHHHHHSCTTSCEEEEECBCCTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCcEEEEecCCCC-----CCcceEEccCHHHHHHHHHHHHHHhcCcCCCceEEEEEcCCCchhHHHHHH
Confidence 555666777889999987543321 1223456678888899999988777 89999999743 334556678
Q ss_pred HHHHHHhhc-ceEEEEEEecCCCCCCChhHHHHHHHHHHhC--CceEEEEEcChhhHHHHHHHHHHcCcccCCeEEEEeC
Q 002364 183 ALNDKLAER-RCRISYKSGIPPESGVNTGYVMDLLVKVALM--ESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATD 259 (930)
Q Consensus 183 ~l~~~l~~~-g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viil~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~ 259 (930)
.+.+++++. |+++... .... .+.......+.++.+. ++++|+ +.+...+..+++++++.|+ ..+...++.|
T Consensus 148 gf~~~l~~~~~~~~~~~--~~~~--~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~-p~di~vig~d 221 (276)
T 3ksm_A 148 GFLDVLRKHDKIRIIAA--PYAG--DDRGAARSEMLRLLKETPTIDGLF-TPNESTTIGALVAIRQSGM-SKQFGFIGFD 221 (276)
T ss_dssp HHHHHHTTCTTEEEEEC--CBCC--SSHHHHHHHHHHHHHHCSCCCEEE-CCSHHHHHHHHHHHHHTTC-TTSSEEEEES
T ss_pred HHHHHHHhCCCcEEEEE--ecCC--CcHHHHHHHHHHHHHhCCCceEEE-ECCchhhhHHHHHHHHcCC-CCCeEEEEeC
Confidence 899999988 8877632 2222 2345555556665443 345544 4455677789999999997 3344445443
No 79
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=98.31 E-value=2.6e-05 Score=82.89 Aligned_cols=202 Identities=12% Similarity=0.117 Sum_probs=130.0
Q ss_pred CceEEEEEEeeCCCcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCChhH
Q 002364 29 PAVVNVGALFTLDSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCSTV 108 (930)
Q Consensus 29 ~~~i~IG~i~~~s~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~s~~ 108 (930)
..+.+||++.+.+.+.-.....|++ +.+++.|.+ .|.++.+.+.|+.+++.........+.+++|++||.... ..
T Consensus 6 ~~t~~IGvi~~~~~p~~~~~~~gi~---~~l~~~Gy~-~g~~v~l~~~~~~~~~~~~~~~~~~l~~~~vDgII~~~~-~~ 80 (302)
T 2qh8_A 6 AKTAKVAVSQIVEHPALDATRQGLL---DGLKAKGYE-EGKNLEFDYKTAQGNPAIAVQIARQFVGENPDVLVGIAT-PT 80 (302)
T ss_dssp -CCEEEEEEESSCCHHHHHHHHHHH---HHHHHTTCC-BTTTEEEEEEECTTCHHHHHHHHHHHHHTCCSEEEEESH-HH
T ss_pred cCCcEEEEEEeccChhHHHHHHHHH---HHHHHcCCC-CCCceEEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCh-HH
Confidence 3579999985445443334445554 445555555 478999999999999999888888888889999987543 22
Q ss_pred HHHHHHhhccCCCcEEecccCCCCCCC------CCCCceEeecCCchHHHHHHHHHHHhc--CccEEEEEEEcCc-cccc
Q 002364 109 AHIVSYVSNELQVPLLSFGVTDPTLSS------LQYPFFVRTTQSDSYQMTAVAEMVSYY--GWNAVSVIFVDNE-YGRN 179 (930)
Q Consensus 109 ~~~v~~~~~~~~iP~is~~a~~~~l~~------~~~p~~~r~~p~~~~~~~ai~~~l~~~--~w~~v~ii~~d~~-~g~~ 179 (930)
...+.. ...++|+|..+...+.... ...+++.... +...+...++++... |.+++++++.+.. .++.
T Consensus 81 ~~~~~~--~~~~iPvV~~~~~~~~~~~~v~~~~~~~~~~~gv~--~~~~~~~~~~~l~~~~Pg~~~I~~i~~~~~~~~~~ 156 (302)
T 2qh8_A 81 AQALVS--ATKTIPIVFTAVTDPVGAKLVKQLEQPGKNVTGLS--DLSPVEQHVELIKEILPNVKSIGVVYNPGEANAVS 156 (302)
T ss_dssp HHHHHH--HCSSSCEEEEEESCTTTTTSCSCSSSCCSSEEEEE--CCCCHHHHHHHHHHHSTTCCEEEEEECTTCHHHHH
T ss_pred HHHHHh--cCCCcCEEEEecCCHhhcCccccccCCCCCEEEEE--CCcCHHHHHHHHHHhCCCCcEEEEEecCCCcchHH
Confidence 333333 2679999987655443211 1123444443 222345666777776 9999999996543 3566
Q ss_pred hHHHHHHHHhhcceEEEEEEecCCCCCCChhHHHHHHHHHHhCCceEEEEEcChhhHHHHHHHHHHcC
Q 002364 180 GVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLG 247 (930)
Q Consensus 180 ~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~~~~~a~~~g 247 (930)
..+.+++++++.|+++...... +..+....++++.. ++++|++..+ ..+...++++.+.+
T Consensus 157 r~~g~~~al~~~gi~~~~~~~~------~~~~~~~~~~~l~~-~~dai~~~~D-~~a~g~~~~l~~~~ 216 (302)
T 2qh8_A 157 LMELLKLSAAKHGIKLVEATAL------KSADVQSATQAIAE-KSDVIYALID-NTVASAIEGMIVAA 216 (302)
T ss_dssp HHHHHHHHHHHTTCEEEEEECS------SGGGHHHHHHHHGG-GCSEEEECSC-HHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCEEEEEecC------ChHHHHHHHHHHhc-cCCEEEECCc-HhHHHHHHHHHHHH
Confidence 6789999999999987654321 24567777888764 6888877644 33333444444443
No 80
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=98.30 E-value=4.8e-05 Score=80.74 Aligned_cols=210 Identities=10% Similarity=-0.050 Sum_probs=133.8
Q ss_pred ceEEEEEEeeCC-CcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCChHHHHHHHHHHHhcCcEEEE-cCCChh
Q 002364 30 AVVNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAII-GPQCST 107 (930)
Q Consensus 30 ~~i~IG~i~~~s-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aii-Gp~~s~ 107 (930)
++.+||++.|.. .++......+++.+.++. |+++.+ +.++..++.........++.+++.+|| .|..+.
T Consensus 3 ~~~~Ig~i~~~~~~~~~~~~~~g~~~~~~~~--------g~~~~~-~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~ 73 (303)
T 3d02_A 3 AEKTVVNISKVDGMPWFNRMGEGVVQAGKEF--------NLNASQ-VGPSSTDAPQQVKIIEDLIARKVDAITIVPNDAN 73 (303)
T ss_dssp -CEEEEEECSCSSCHHHHHHHHHHHHHHHHT--------TEEEEE-ECCSSSCHHHHHHHHHHHHHTTCSEEEECCSCHH
T ss_pred CceEEEEEeccCCChHHHHHHHHHHHHHHHc--------CCEEEE-ECCCCCCHHHHHHHHHHHHHcCCCEEEEecCChH
Confidence 468999999864 445556677777777764 444432 234667777777777888888888876 455554
Q ss_pred HHHHHHHhhccCCCcEEecccCCCCCCCCCCCceEeecCCchHHHHHHHHHHHh-cCcc-EEEEEEEc--CccccchHHH
Q 002364 108 VAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSY-YGWN-AVSVIFVD--NEYGRNGVSA 183 (930)
Q Consensus 108 ~~~~v~~~~~~~~iP~is~~a~~~~l~~~~~p~~~r~~p~~~~~~~ai~~~l~~-~~w~-~v~ii~~d--~~~g~~~~~~ 183 (930)
........+...++|+|...... .. .+.+.....++...+..+++++.. .|-+ +++++..+ ....+...+.
T Consensus 74 ~~~~~~~~~~~~~ipvV~~~~~~--~~---~~~~~~v~~d~~~~g~~a~~~l~~~~g~~~~i~~i~g~~~~~~~~~R~~g 148 (303)
T 3d02_A 74 VLEPVFKKARDAGIVVLTNESPG--QP---SANWDVEIIDNEKFAAEYVEHMAKRMGGKGGYVIYVGSLTVPQHNLWADL 148 (303)
T ss_dssp HHHHHHHHHHHTTCEEEEESCTT--CT---TCSEEEESSCHHHHHHHHHHHHHHHTTTCEEEEEECSCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCeEEEEecCC--CC---CCceEEEecCHHHHHHHHHHHHHHHhCcCceEEEEecCCCCccHHHHHHH
Confidence 44455566677899999875431 11 133455677777888888898776 7887 99988743 2334456778
Q ss_pred HHHHHhhcc--eEEEEEEecCCCCCCChhHHHHHHHHHHhCC--ceEEEEEcChhhHHHHHHHHHHcCcccCCeEEEEe
Q 002364 184 LNDKLAERR--CRISYKSGIPPESGVNTGYVMDLLVKVALME--SRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIAT 258 (930)
Q Consensus 184 l~~~l~~~g--~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~--~~viil~~~~~~~~~~~~~a~~~g~~~~~~~~i~~ 258 (930)
+++++++.+ +++... .+... .+..+....+.++.+.. +++|+. .+...+..+++++++.|+. .+...++.
T Consensus 149 f~~~l~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~a~g~~~al~~~g~~-~dv~vig~ 222 (303)
T 3d02_A 149 LVKYQKEHYPDMHEVTR-RMPVA--ESVDDSRRTTLDLMKTYPDLKAVVS-FGSNGPIGAGRAVKEKRAK-NKVAVYGM 222 (303)
T ss_dssp HHHHHHHHCTTEEESSS-CBSCT--TCHHHHHHHHHHHHHHCTTEEEEEE-SSTTHHHHHHHHHHHTTCT-TTCEEEEC
T ss_pred HHHHHHhhCCCCEEEEe-ecCCC--CCHHHHHHHHHHHHHhCCCCCEEEE-eCCcchhHHHHHHHhcCCC-CCeEEEEe
Confidence 888888764 443211 11212 23455556666665544 455444 4556777899999999975 34444443
No 81
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=98.30 E-value=4.1e-05 Score=80.66 Aligned_cols=209 Identities=9% Similarity=-0.042 Sum_probs=134.8
Q ss_pred eEEEEEEeeCC---CcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCC-Ch
Q 002364 31 VVNVGALFTLD---STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQ-CS 106 (930)
Q Consensus 31 ~i~IG~i~~~s---~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~-~s 106 (930)
+.+||++.|.. .++......+++.++++. |+++.+...|+..++....+....++.++|.+||... ..
T Consensus 5 ~~~Ig~v~~~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~ 76 (289)
T 3brs_A 5 QYYMICIPKVLDDSSDFWSVLVEGAQMAAKEY--------EIKLEFMAPEKEEDYLVQNELIEEAIKRKPDVILLAAADY 76 (289)
T ss_dssp CCEEEEECSCCCSSSHHHHHHHHHHHHHHHHH--------TCEEEECCCSSTTCHHHHHHHHHHHHHTCCSEEEECCSCT
T ss_pred CcEEEEEeCCCCCCchHHHHHHHHHHHHHHHc--------CCEEEEecCCCCCCHHHHHHHHHHHHHhCCCEEEEeCCCh
Confidence 46799999853 344455667777776664 4666554444466777777777788888898887533 33
Q ss_pred hHHHHHHHhhccCCCcEEecccCCCCCCCCCCCceEeecCCchHHHHHHHHHHHhc-C-ccEEEEEEEcC--ccccchHH
Q 002364 107 TVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYY-G-WNAVSVIFVDN--EYGRNGVS 182 (930)
Q Consensus 107 ~~~~~v~~~~~~~~iP~is~~a~~~~l~~~~~p~~~r~~p~~~~~~~ai~~~l~~~-~-w~~v~ii~~d~--~~g~~~~~ 182 (930)
.........+.+.++|+|......+. .+.+..+.+++...+..+++++... | -++++++..+. .....-.+
T Consensus 77 ~~~~~~~~~~~~~~iPvV~~~~~~~~-----~~~~~~V~~D~~~~g~~~~~~L~~~~G~~~~i~~i~~~~~~~~~~~R~~ 151 (289)
T 3brs_A 77 EKTYDAAKEIKDAGIKLIVIDSGMKQ-----DIADITVATDNIQAGIRIGAVTKNLVRKSGKIGVISFVKNSKTAMDREE 151 (289)
T ss_dssp TTTHHHHTTTGGGTCEEEEESSCCSS-----CCCSEEEECCHHHHHHHHHHHHHHHTSSSCEEEEEESCTTSHHHHHHHH
T ss_pred HHhHHHHHHHHHCCCcEEEECCCCCC-----CcceEEEeeChHHHHHHHHHHHHHHcCCCceEEEEECCCCCccHHHHHH
Confidence 32224455566789999987543221 1235567788888888888987774 6 89999998542 34455678
Q ss_pred HHHHHHhhcceEEEEEEecCCCCCCChhHHHHHHHHHHhC--CceEEEEEcChhhHHHHHHHHHHcCcccCCeEEEEe
Q 002364 183 ALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALM--ESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIAT 258 (930)
Q Consensus 183 ~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viil~~~~~~~~~~~~~a~~~g~~~~~~~~i~~ 258 (930)
.+++++++.|..+.... ... .+..+....+.++.+. .+++|+ +.+...+..+++++++.|+. .+...++.
T Consensus 152 gf~~~l~~~g~~~~~~~--~~~--~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~G~~-~di~vvg~ 223 (289)
T 3brs_A 152 GLKIGLSDDSNKIEAIY--YCD--SNYDKAYDGTVELLTKYPDISVMV-GLNQYSATGAARAIKDMSLE-AKVKLVCI 223 (289)
T ss_dssp HHHHHHGGGGGGEEEEE--ECT--TCHHHHHHHHHHHHHHCTTEEEEE-ESSHHHHHHHHHHHHHTTCT-TTSEEEEE
T ss_pred HHHHHHHhCCCcEEeee--cCC--CCHHHHHHHHHHHHHhCCCceEEE-ECCCcchHHHHHHHHhcCCC-CCEEEEEE
Confidence 89999999886543322 112 2345555556665443 355554 45566788899999999985 33444443
No 82
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=98.29 E-value=1.1e-05 Score=85.29 Aligned_cols=211 Identities=8% Similarity=-0.045 Sum_probs=134.8
Q ss_pred CceEEEEEEeeC---CCcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCC
Q 002364 29 PAVVNVGALFTL---DSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQC 105 (930)
Q Consensus 29 ~~~i~IG~i~~~---s~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~ 105 (930)
..+.+||+++|. +.++......+++.++++. |+++ .+.++..++.........++.++|.+||....
T Consensus 17 ~~~~~Ig~i~~~~~~~~~~~~~~~~gi~~~~~~~--------g~~~--~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~ 86 (296)
T 3brq_A 17 KSTQTLGLVVTNTLYHGIYFSELLFHAARMAEEK--------GRQL--LLADGKHSAEEERQAIQYLLDLRCDAIMIYPR 86 (296)
T ss_dssp --CCEEEEEECGGGCC--CHHHHHHHHHHHHHHT--------TCEE--EEECCTTSHHHHHHHHHHHHHTTCSEEEEECS
T ss_pred CCCceEEEEeCCcccCCchHHHHHHHHHHHHHHC--------CCEE--EEEeCCCCHHHHHHHHHHHHhcCCCEEEEecC
Confidence 346899999986 4555566777777777652 5554 45677777777777777888888988876433
Q ss_pred hhHHHHHHHhhcc-CCCcEEecccCCCCCCCCCCCceEeecCCchHHHHHHHHHHHhcCccEEEEEEEcC--ccccchHH
Q 002364 106 STVAHIVSYVSNE-LQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDN--EYGRNGVS 182 (930)
Q Consensus 106 s~~~~~v~~~~~~-~~iP~is~~a~~~~l~~~~~p~~~r~~p~~~~~~~ai~~~l~~~~w~~v~ii~~d~--~~g~~~~~ 182 (930)
...... ...+.+ .++|+|......+ + +.+..+..++...+..++++|...|.++++++..+. ..+..-.+
T Consensus 87 ~~~~~~-~~~l~~~~~iPvV~~~~~~~---~---~~~~~V~~d~~~~~~~a~~~l~~~G~~~I~~i~~~~~~~~~~~R~~ 159 (296)
T 3brq_A 87 FLSVDE-IDDIIDAHSQPIMVLNRRLR---K---NSSHSVWCDHKQTSFNAVAELINAGHQEIAFLTGSMDSPTSIERLA 159 (296)
T ss_dssp SSCHHH-HHHHHHTCSSCEEEESCCCS---S---SGGGEECCCHHHHHHHHHHHHHHTTCCSEEEECCCTTCHHHHHHHH
T ss_pred CCChHH-HHHHHhcCCCCEEEEccccC---C---CCCCEEEEchHHHHHHHHHHHHHCCCceEEEEcCCCCCccHHHHHH
Confidence 222222 344555 8999998754322 1 233456677777788888988888999999998543 34556678
Q ss_pred HHHHHHhhcceEEEEEEecCCCCCCChhHHHHHHHHHHh--CCceEEEEEcChhhHHHHHHHHHHcCcccCC-eEEEEeC
Q 002364 183 ALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVAL--MESRVIVLHVSPSLGFQVFSVAKYLGMMGNG-YVWIATD 259 (930)
Q Consensus 183 ~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~viil~~~~~~~~~~~~~a~~~g~~~~~-~~~i~~~ 259 (930)
.+.+++++.|+.+.....+... .+..+....+.++.+ .++++|++ .+...+..+++++++.|+..++ ...++.|
T Consensus 160 gf~~~l~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~a~g~~~al~~~g~~vP~di~vvg~d 236 (296)
T 3brq_A 160 GYKDALAQHGIALNEKLIANGK--WTPASGAEGVEMLLERGAKFSALVA-SNDDMAIGAMKALHERGVAVPEQVSVIGFD 236 (296)
T ss_dssp HHHHHHHTTTCCCCGGGEECCC--SSHHHHHHHHHHHHTC--CCSEEEE-SSHHHHHHHHHHHHHHTCCTTTTCEEEEES
T ss_pred HHHHHHHHcCCCCChhhEEeCC--CChhHHHHHHHHHHhCCCCCCEEEE-CChHHHHHHHHHHHHcCCCCCCceEEEeec
Confidence 8999999998765321112212 234444455666644 35677664 4566788899999999986443 3444443
No 83
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=98.29 E-value=4.9e-05 Score=81.92 Aligned_cols=212 Identities=8% Similarity=0.008 Sum_probs=136.6
Q ss_pred ceEEEEEEeeCC-CcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCChHHHHHHHHHHHhcC--cEEEEcCCC-
Q 002364 30 AVVNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETD--IVAIIGPQC- 105 (930)
Q Consensus 30 ~~i~IG~i~~~s-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~--v~aiiGp~~- 105 (930)
.+.+||+++|.. ..+-.....+++.+.++. |+++ .+.++..++.........++.++ |.+||....
T Consensus 4 ~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~l--~~~~~~~~~~~~~~~i~~l~~~~~~vdgiIi~~~~ 73 (332)
T 2rjo_A 4 GQTTLACSFRSLTNPYYTAFNKGAQSFAKSV--------GLPY--VPLTTEGSSEKGIADIRALLQKTGGNLVLNVDPND 73 (332)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHHHHHHHHH--------TCCE--EEEECTTCHHHHHHHHHHHHHHTTTCEEEEECCSS
T ss_pred CccEEEEEecCCCcHHHHHHHHHHHHHHHHc--------CCEE--EEecCCCCHHHHHHHHHHHHHCCCCCCEEEEeCCC
Confidence 356899999853 433345556666666653 4444 44566777777677777788888 999886433
Q ss_pred hhHHHHHHHhhccCCCcEEecccCCCCCCCCCC--CceEeecCCchHHHHHHHHHHHh--cCccEEEEEEEc--Cccccc
Q 002364 106 STVAHIVSYVSNELQVPLLSFGVTDPTLSSLQY--PFFVRTTQSDSYQMTAVAEMVSY--YGWNAVSVIFVD--NEYGRN 179 (930)
Q Consensus 106 s~~~~~v~~~~~~~~iP~is~~a~~~~l~~~~~--p~~~r~~p~~~~~~~ai~~~l~~--~~w~~v~ii~~d--~~~g~~ 179 (930)
..........+...++|+|......+......+ +.+..+..++...+..++++|.. .|.++++++... ......
T Consensus 74 ~~~~~~~~~~~~~~~iPvV~~~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~~~G~~~I~~i~g~~~~~~~~~ 153 (332)
T 2rjo_A 74 SADARVIVEACSKAGAYVTTIWNKPKDLHPWDYNPNYVAHLSYDGVAYGEETATQLFKSMGGKGGVVALGGIFSNVPAIE 153 (332)
T ss_dssp HHHHHHHHHHHHHHTCEEEEESCCCTTCCGGGGTTTEEEEEECCHHHHHHHHHHHHHHHTTTCEEEEEEECCTTCHHHHH
T ss_pred HHHHHHHHHHHHHCCCeEEEECCCCCcccchhcccceeEEEccChHHHHHHHHHHHHHHcCCCCeEEEEECCCCCccHHH
Confidence 333334455566689999987554332111111 35667778888888889998877 699999999854 234556
Q ss_pred hHHHHHHHHhhc-ceEEEEEEecCCCCCCChhHHHHHHHHHHhC---CceEEEEEcChhhHHHHHHHHHHcCcccCCeEE
Q 002364 180 GVSALNDKLAER-RCRISYKSGIPPESGVNTGYVMDLLVKVALM---ESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVW 255 (930)
Q Consensus 180 ~~~~l~~~l~~~-g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~viil~~~~~~~~~~~~~a~~~g~~~~~~~~ 255 (930)
-.+.+++++++. |+++.....- . .+..+....+.++.+. ++++|+ +.+...+..+++++++.|+. .+...
T Consensus 154 R~~Gf~~al~~~pgi~~~~~~~~--~--~~~~~~~~~~~~ll~~~~~~~~aI~-~~nd~~A~g~~~al~~~G~~-~di~v 227 (332)
T 2rjo_A 154 RKAGLDAALKKFPGIQLLDFQVA--D--WNSQKAFPIMQAWMTRFNSKIKGVW-AANDDMALGAIEALRAEGLA-GQIPV 227 (332)
T ss_dssp HHHHHHHHHHTCTTEEEEEEEEC--T--TCHHHHHHHHHHHHHHHGGGEEEEE-ESSHHHHHHHHHHHHHTTCB-TTBCE
T ss_pred HHHHHHHHHHhCCCcEEEeeccC--C--CCHHHHHHHHHHHHHhcCCCeeEEE-ECCCchHHHHHHHHHHcCCC-CCCEE
Confidence 678899999998 9887543221 1 2344555556665443 456655 45566788899999999975 33334
Q ss_pred EE
Q 002364 256 IA 257 (930)
Q Consensus 256 i~ 257 (930)
++
T Consensus 228 vg 229 (332)
T 2rjo_A 228 TG 229 (332)
T ss_dssp EC
T ss_pred Ee
Confidence 43
No 84
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=98.27 E-value=2.9e-05 Score=82.19 Aligned_cols=203 Identities=8% Similarity=-0.058 Sum_probs=140.1
Q ss_pred eEEEEEEeeCC-CcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCC--CChHHHHHHHHHHHhcCcEEEE-cCCCh
Q 002364 31 VVNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSN--CSGFIGMVEALRFMETDIVAII-GPQCS 106 (930)
Q Consensus 31 ~i~IG~i~~~s-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~l~~~D~~--~~~~~a~~~a~~li~~~v~aii-Gp~~s 106 (930)
.++||++.|.. ..+-.....+++.+.++. |+++. +.++. .++....+....++.++|.+|| .|...
T Consensus 3 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~--~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~ 72 (297)
T 3rot_A 3 RDKYYLITHGSQDPYWTSLFQGAKKAAEEL--------KVDLQ--ILAPPGANDVPKQVQFIESALATYPSGIATTIPSD 72 (297)
T ss_dssp CCEEEEECSCCCSHHHHHHHHHHHHHHHHH--------TCEEE--EECCSSSCCHHHHHHHHHHHHHTCCSEEEECCCCS
T ss_pred eEEEEEEecCCCCchHHHHHHHHHHHHHHh--------CcEEE--EECCCCcCCHHHHHHHHHHHHHcCCCEEEEeCCCH
Confidence 47899999975 444556677777777763 45555 44444 5788877888888888888876 56655
Q ss_pred hHHHHHHHhhccCCCcEEecccCCCCCCCCCCCceEeecCCchHHHHHHHHHHHhcC--ccEEEEEEEcC--ccccchHH
Q 002364 107 TVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYG--WNAVSVIFVDN--EYGRNGVS 182 (930)
Q Consensus 107 ~~~~~v~~~~~~~~iP~is~~a~~~~l~~~~~p~~~r~~p~~~~~~~ai~~~l~~~~--w~~v~ii~~d~--~~g~~~~~ 182 (930)
.........+...++|+|......+.. ...+.+..+.+++...+..++++|...+ -++++++..+. ...+.-.+
T Consensus 73 ~~~~~~~~~~~~~giPvV~~~~~~~~~--~~~~~~~~V~~D~~~~g~~a~~~l~~~g~~~~~i~~i~g~~~~~~~~~R~~ 150 (297)
T 3rot_A 73 TAFSKSLQRANKLNIPVIAVDTRPKDK--TKNPYLVFLGSDNLLAGKKLGEKALELTPSAKRALVLNPQPGHIGLEKRAY 150 (297)
T ss_dssp STTHHHHHHHHHHTCCEEEESCCCSCT--TTSCCSCEEECCHHHHHHHHHHHHHHHCTTCCEEEEEESCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCEEEEcCCCccc--cccCcceEEccChHHHHHHHHHHHHHhcCCCceEEEEeCCCCcHHHHHHHH
Confidence 555556667777899999876543321 1124456677888888999999988877 89999997443 33445678
Q ss_pred HHHHHHhhcceEEEEEEecCCCCCCChhHHHHHHHHHHhC--CceEEEEEcChhhHHHHHHHHHHcCcccC
Q 002364 183 ALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALM--ESRVIVLHVSPSLGFQVFSVAKYLGMMGN 251 (930)
Q Consensus 183 ~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viil~~~~~~~~~~~~~a~~~g~~~~ 251 (930)
.+++++++.|+++.... . . .........+.++.+. ++++|+ +.+...+..++++++++|+..+
T Consensus 151 Gf~~~l~~~g~~~~~~~--~-~--~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~A~g~~~al~~~g~~vP 215 (297)
T 3rot_A 151 GIKTILQDKGIFFEELD--V-G--TDPNQVQSRVKSYFKIHPETNIIF-CLTSQALDPLGQMLLHPDRYDF 215 (297)
T ss_dssp HHHHHHHHTTCEEEEEE--C-C--SCHHHHHHHHHHHHHHCTTCCEEE-ESSHHHHHHHHHHHHSHHHHTC
T ss_pred HHHHHHHhcCCeEEEee--c-C--CChHHHHHHHHHHHHhCCCCCEEE-EcCCcchHHHHHHHHhcCCccC
Confidence 89999999999887543 2 2 2345555566664433 345544 4566777889999999987543
No 85
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=98.23 E-value=9.9e-05 Score=78.88 Aligned_cols=206 Identities=11% Similarity=-0.001 Sum_probs=131.3
Q ss_pred EEEEEeeCC-CcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEe-cCCCChHHHHHHHHHHHhcCcEEEE-cCCChhHH
Q 002364 33 NVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQ-SSNCSGFIGMVEALRFMETDIVAII-GPQCSTVA 109 (930)
Q Consensus 33 ~IG~i~~~s-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~l~~~-D~~~~~~~a~~~a~~li~~~v~aii-Gp~~s~~~ 109 (930)
+||++.|.. .++......+++.++++. |++ +.+. ++..++....+....++.++|.+|| .|..+...
T Consensus 5 ~Igvi~~~~~~~~~~~~~~g~~~~~~~~--------g~~--~~~~~~~~~d~~~q~~~i~~li~~~vdgiii~~~~~~~~ 74 (316)
T 1tjy_A 5 RIAFIPKLVGVGFFTSGGNGAQEAGKAL--------GID--VTYDGPTEPSVSGQVQLVNNFVNQGYDAIIVSAVSPDGL 74 (316)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHHHHHH--------TCE--EEECCCSSCCHHHHHHHHHHHHHTTCSEEEECCSSSSTT
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHHHh--------CCE--EEEECCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCHHHH
Confidence 799999864 444456667777777765 333 4455 4677888888888889988888865 56655544
Q ss_pred HHHHHhhccCCCcEEecccCCCCCCCCCCCceEeecCCchHHHHHHHHHHHh---cCccEEEEEEEc--CccccchHHHH
Q 002364 110 HIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSY---YGWNAVSVIFVD--NEYGRNGVSAL 184 (930)
Q Consensus 110 ~~v~~~~~~~~iP~is~~a~~~~l~~~~~p~~~r~~p~~~~~~~ai~~~l~~---~~w~~v~ii~~d--~~~g~~~~~~l 184 (930)
..+...+...+||+|.+....+ .. ....+....++...+...+++|.. .|-++++++... +.......+.+
T Consensus 75 ~~~~~~a~~~gipvV~~d~~~~---~~-~~~~~v~~~D~~~~g~~~~~~L~~~~~~g~~~i~~i~g~~~~~~~~~r~~g~ 150 (316)
T 1tjy_A 75 CPALKRAMQRGVKILTWDSDTK---PE-CRSYYINQGTPKQLGSMLVEMAAHQVDKEKAKVAFFYSSPTVTDQNQWVKEA 150 (316)
T ss_dssp HHHHHHHHHTTCEEEEESSCCC---GG-GCSEEEESCCHHHHHHHHHHHHHHHHCSSSEEEEEEESCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHCcCEEEEecCCCC---CC-CceEEEecCCHHHHHHHHHHHHHHHcCCCCCEEEEEEcCCCChhHHHHHHHH
Confidence 5556667778999998754221 11 112233356677778888888765 578899999743 33445556788
Q ss_pred HHHHhhc--ceEEEEEEecCCCCCCChhHHHHHHHHHHhC--CceEEEEEcChhhHHHHHHHHHHcCcccCCeEEEEeC
Q 002364 185 NDKLAER--RCRISYKSGIPPESGVNTGYVMDLLVKVALM--ESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATD 259 (930)
Q Consensus 185 ~~~l~~~--g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viil~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~ 259 (930)
.+.+++. ++++.....-. .+.......++++.+. ++++|+. .+...+..++++++++| . .....++.|
T Consensus 151 ~~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ll~~~~~~~aI~~-~nD~~A~g~~~al~~~G-~-~dv~VvG~D 222 (316)
T 1tjy_A 151 KAKISQEHPGWEIVTTQFGY----NDATKSLQTAEGIIKAYPDLDAIIA-PDANALPAAAQAAENLK-R-NNLAIVGFS 222 (316)
T ss_dssp HHHHHHHCTTEEEEEEEECT----TCHHHHHHHHHHHHHHCSSCCEEEE-CSTTHHHHHHHHHHHTT-C-CSCEEEEBC
T ss_pred HHHHHhhCCCcEEEEeccCC----CCHHHHHHHHHHHHHhCCCCCEEEE-CCCccHHHHHHHHHHcC-C-CCEEEEEeC
Confidence 8888765 56665432222 2345555566665543 3455444 45567788899999988 5 444444443
No 86
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=98.23 E-value=8.3e-06 Score=86.04 Aligned_cols=207 Identities=9% Similarity=-0.007 Sum_probs=129.5
Q ss_pred CceEEEEEEeeCCCcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCChhH
Q 002364 29 PAVVNVGALFTLDSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCSTV 108 (930)
Q Consensus 29 ~~~i~IG~i~~~s~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~s~~ 108 (930)
..+.+||++.|.+.++......+++.++++ .|+++. +.++..++....+....++.++|.+||.......
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~~~gi~~~~~~--------~g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~ 75 (288)
T 2qu7_A 6 GRSNIIAFIVPDQNPFFTEVLTEISHECQK--------HHLHVA--VASSEENEDKQQDLIETFVSQNVSAIILVPVKSK 75 (288)
T ss_dssp -CEEEEEEEESSCCHHHHHHHHHHHHHHGG--------GTCEEE--EEECTTCHHHHHHHHHHHHHTTEEEEEECCSSSC
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHHHHHH--------CCCEEE--EEeCCCCHHHHHHHHHHHHHcCccEEEEecCCCC
Confidence 457889999987333333445555555443 155554 4566667777677777788889999886443322
Q ss_pred HHHHHHhhccCCCcEEecccCCCCCCCCCCCceEeecCCchHHHHHHHHHHHhcCccEEEEEEEcC--ccccchHHHHHH
Q 002364 109 AHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDN--EYGRNGVSALND 186 (930)
Q Consensus 109 ~~~v~~~~~~~~iP~is~~a~~~~l~~~~~p~~~r~~p~~~~~~~ai~~~l~~~~w~~v~ii~~d~--~~g~~~~~~l~~ 186 (930)
...+..+ .++|+|......+. +.+..+..++...+..++++|...|-++++++.... .....-.+.+.+
T Consensus 76 ~~~~~~l---~~iPvV~~~~~~~~------~~~~~V~~d~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~gf~~ 146 (288)
T 2qu7_A 76 FQMKREW---LKIPIMTLDRELES------TSLPSITVDNEEAAYIATKRVLESTCKEVGLLLANPNISTTIGRKNGYNK 146 (288)
T ss_dssp CCCCGGG---GGSCEEEESCCCSS------CCCCEEEECHHHHHHHHHHHHHTSSCCCEEEEECCTTSHHHHHHHHHHHH
T ss_pred hHHHHHh---cCCCEEEEecccCC------CCCCEEEECcHHHHHHHHHHHHHcCCCcEEEEecCCCCCCHHHHHHHHHH
Confidence 2222222 78999987543221 234556677888888899998888999999998542 345566788899
Q ss_pred HHhhcceEEEEEEec--CCCCCC----ChhHHHHHHHHHHhCCceEEEEEcChhhHHHHHHHHHHcCcccCC-eEEEE
Q 002364 187 KLAERRCRISYKSGI--PPESGV----NTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGNG-YVWIA 257 (930)
Q Consensus 187 ~l~~~g~~v~~~~~~--~~~~~~----~~~~~~~~l~~l~~~~~~viil~~~~~~~~~~~~~a~~~g~~~~~-~~~i~ 257 (930)
++++.|+.+.....+ ... . +..+....+.++.+.++++|+. .+...+..+++++++.|+..++ ...++
T Consensus 147 ~l~~~g~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~ai~~-~~d~~a~g~~~al~~~g~~vP~di~vvg 221 (288)
T 2qu7_A 147 AISEFDLNVNPSLIHYSDQQ--LGTNAQIYSGYEATKTLLSKGIKGIVA-TNHLLLLGALQAIKESEKEIKKDVIIVG 221 (288)
T ss_dssp HHHHTTCCCCGGGEEECCSS--CSHHHHHHHHHHHHHHHHHTTCCEEEE-CSHHHHHHHHHHHHHSSCCBTTTBEEEE
T ss_pred HHHHcCCCCCcceEEeccCC--ccccCCHHHHHHHHHHHHhcCCCEEEE-CCcHHHHHHHHHHHHhCCCCCCceEEEE
Confidence 999988764311111 111 1 1233334455544447887765 4566778899999999986443 33444
No 87
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=98.19 E-value=4.8e-05 Score=80.11 Aligned_cols=210 Identities=9% Similarity=0.011 Sum_probs=131.7
Q ss_pred ceEEEEEEeeCC-CcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCChhH
Q 002364 30 AVVNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCSTV 108 (930)
Q Consensus 30 ~~i~IG~i~~~s-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~s~~ 108 (930)
.+.+||++.|.. .++......+++.+.++. |+++.+ .++..++....+....++.++|.+||.......
T Consensus 6 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~--------g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~ 75 (289)
T 1dbq_A 6 HTKSIGLLATSSEAAYFAEIIEAVEKNCFQK--------GYTLIL--GNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEYP 75 (289)
T ss_dssp --CEEEEEESCTTSHHHHHHHHHHHHHHHHH--------TCEEEE--EECTTCHHHHHHHHHHHHHTTCSEEEEECSCCC
T ss_pred CCCEEEEEeCCCCChHHHHHHHHHHHHHHHc--------CCeEEE--EcCCCChHHHHHHHHHHHhCCCCEEEEEeccCC
Confidence 457899999853 444456677777777663 455544 566677777777777788888888875322211
Q ss_pred HHHHHHhhcc-CCCcEEecccCCCCCCCCCCCceEeecCCchHHHHHHHHHHHhcCccEEEEEEEc--CccccchHHHHH
Q 002364 109 AHIVSYVSNE-LQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVD--NEYGRNGVSALN 185 (930)
Q Consensus 109 ~~~v~~~~~~-~~iP~is~~a~~~~l~~~~~p~~~r~~p~~~~~~~ai~~~l~~~~w~~v~ii~~d--~~~g~~~~~~l~ 185 (930)
. .+.+.+.+ .++|+|......+. . ++...+.+++...+..+++++...|.++++++..+ ....+.-.+.+.
T Consensus 76 ~-~~~~~l~~~~~iPvV~~~~~~~~---~--~~~~~V~~d~~~~~~~~~~~L~~~G~~~i~~i~~~~~~~~~~~R~~g~~ 149 (289)
T 1dbq_A 76 E-PLLAMLEEYRHIPMVVMDWGEAK---A--DFTDAVIDNAFEGGYMAGRYLIERGHREIGVIPGPLERNTGAGRLAGFM 149 (289)
T ss_dssp H-HHHHHHHHTTTSCEEEEECSSCC---S--SSCEEEEECHHHHHHHHHHHHHHTTCCSEEEECCC------CHHHHHHH
T ss_pred H-HHHHHHHhccCCCEEEEccCCCc---c--CcCCEEEeCcHHHHHHHHHHHHHCCCCeEEEEecCCccccHHHHHHHHH
Confidence 1 22333433 79999987543321 1 22345667777888889999888899999999754 334566788899
Q ss_pred HHHhhcceEEEEEEecCCCCCCChhHHHHHHHHHHh--CCceEEEEEcChhhHHHHHHHHHHcCcccCC-eEEEEe
Q 002364 186 DKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVAL--MESRVIVLHVSPSLGFQVFSVAKYLGMMGNG-YVWIAT 258 (930)
Q Consensus 186 ~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~viil~~~~~~~~~~~~~a~~~g~~~~~-~~~i~~ 258 (930)
+++++.|+.+.....+... .+..+....+.++.+ .++++|+. .+...+..+++++++.|+..++ ...++.
T Consensus 150 ~~l~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~a~g~~~al~~~G~~vP~di~vvg~ 222 (289)
T 1dbq_A 150 KAMEEAMIKVPESWIVQGD--FEPESGYRAMQQILSQPHRPTAVFC-GGDIMAMGALCAADEMGLRVPQDVSLIGY 222 (289)
T ss_dssp HHHHHTTCCCCGGGBCCCC--SSHHHHHHHHHHHHTSSSCCSEEEE-SCHHHHHHHHHHHHHTTCCTTTTCEEEEE
T ss_pred HHHHHCCCCCChHHeEeCC--CCHHHHHHHHHHHHhCCCCCCEEEE-CCcHHHHHHHHHHHHcCCCCCCceEEEee
Confidence 9999998764321111111 224444455666654 35677664 4567788899999999986443 334443
No 88
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=98.17 E-value=9.3e-05 Score=79.45 Aligned_cols=210 Identities=8% Similarity=0.033 Sum_probs=129.9
Q ss_pred ceEEEEEEeeCCCcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCChh-H
Q 002364 30 AVVNVGALFTLDSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCST-V 108 (930)
Q Consensus 30 ~~i~IG~i~~~s~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~s~-~ 108 (930)
.+.+||++.|.+.++-.....+++.+.+ +. .|+++ .+.++..++.........++.++|.+||...... .
T Consensus 5 ~~~~Igvi~~~~~~~~~~~~~gi~~~a~---~~----~g~~l--~i~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~ 75 (325)
T 2x7x_A 5 PHFRIGVAQCSDDSWRHKMNDEILREAM---FY----NGVSV--EIRSAGDDNSKQAEDVHYFMDEGVDLLIISANEAAP 75 (325)
T ss_dssp -CCEEEEEESCCSHHHHHHHHHHHHHHT---TS----SSCEE--EEEECTTCHHHHHHHHHHHHHTTCSEEEECCSSHHH
T ss_pred CCeEEEEEecCCCHHHHHHHHHHHHHHH---Hc----CCcEE--EEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCHHH
Confidence 4678999998733322333444444433 22 14544 4566777777777777788888999888644433 2
Q ss_pred HHHHHHhhccCCCcEEecccCCCCCCCCCCCceEeecCCchHHHHHHHHHHHhc--CccEEEEEEEcC--ccccchHHHH
Q 002364 109 AHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYY--GWNAVSVIFVDN--EYGRNGVSAL 184 (930)
Q Consensus 109 ~~~v~~~~~~~~iP~is~~a~~~~l~~~~~p~~~r~~p~~~~~~~ai~~~l~~~--~w~~v~ii~~d~--~~g~~~~~~l 184 (930)
.......+...++|+|.+....+. .+.+..+.+++...+..++++|... |.++++++..+. .....-.+.+
T Consensus 76 ~~~~~~~~~~~~iPvV~~~~~~~~-----~~~~~~V~~D~~~~g~~a~~~L~~~~~G~~~I~~i~~~~~~~~~~~R~~Gf 150 (325)
T 2x7x_A 76 MTPIVEEAYQKGIPVILVDRKILS-----DKYTAYIGADNYEIGRSVGNYIASSLKGKGNIVELTGLSGSTPAMERHQGF 150 (325)
T ss_dssp HHHHHHHHHHTTCCEEEESSCCSS-----SCSSEEEEECHHHHHHHHHHHHHHHTTTEEEEEEEESCTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCeEEEeCCCCCC-----cceeEEEecCHHHHHHHHHHHHHHHcCCCceEEEEECCCCCccHHHHHHHH
Confidence 234445566789999987543221 1234456677777888888887764 899999998542 2345567888
Q ss_pred HHHHhhc-ceEEEEEEecCCCCCCChhHHHHHHHHHHh--CCceEEEEEcChhhHHHHHHHHHHcCcccCCeEEEEeC
Q 002364 185 NDKLAER-RCRISYKSGIPPESGVNTGYVMDLLVKVAL--MESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATD 259 (930)
Q Consensus 185 ~~~l~~~-g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~viil~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~ 259 (930)
.+++++. |+++.... ... .+..+....+.++.+ .++++|+ +.+...+..+++++++.|+ ..+...++.|
T Consensus 151 ~~al~~~pg~~~~~~~--~~~--~~~~~~~~~~~~ll~~~~~~~aI~-~~nd~~A~g~~~al~~~Gi-p~dv~vig~D 222 (325)
T 2x7x_A 151 MAAISKFPDIKLIDKA--DAA--WERGPAEIEMDSMLRRHPKIDAVY-AHNDRIAPGAYQAAKMAGR-EKEMIFVGID 222 (325)
T ss_dssp HHHHHTCTEEEEEEEE--ECT--TSHHHHHHHHHHHHHHCSCCCEEE-ESSTTHHHHHHHHHHHTTC-TTSSEEEEEE
T ss_pred HHHHHhCCCCEEEeee--cCC--CCHHHHHHHHHHHHHhCCCCCEEE-ECCCchHHHHHHHHHHcCC-CCCeEEEEEC
Confidence 9999998 88765322 111 223444445555543 2467666 4555677888999999996 3334444443
No 89
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=98.17 E-value=9.4e-05 Score=78.35 Aligned_cols=191 Identities=13% Similarity=0.160 Sum_probs=127.4
Q ss_pred CCceEEEEEEeeCCCcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCChh
Q 002364 28 RPAVVNVGALFTLDSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCST 107 (930)
Q Consensus 28 ~~~~i~IG~i~~~s~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~s~ 107 (930)
...+++||++--.+.+.-...+.|++ +.+++.|.. .|.++++.+.|.++|+..+.+.+.+|+++++++||+ ..+.
T Consensus 5 ~~~~~~igi~q~~~hp~ld~~~~G~~---~~L~~~G~~-~g~nv~~~~~~a~gd~~~~~~~~~~l~~~~~DlIia-i~t~ 79 (302)
T 3lkv_A 5 MAKTAKVAVSQIVEHPALDATRQGLL---DGLKAKGYE-EGKNLEFDYKTAQGNPAIAVQIARQFVGENPDVLVG-IATP 79 (302)
T ss_dssp --CCEEEEEEESCCCHHHHHHHHHHH---HHHHHTTCC-BTTTEEEEEEECTTCHHHHHHHHHHHHTTCCSEEEE-ESHH
T ss_pred hcCCceEEEEEeecChhHHHHHHHHH---HHHHhhCcc-cCCcEEEEEEeCCCCHHHHHHHHHHHHhcCCcEEEE-cCCH
Confidence 34689999986554332244556665 445556655 689999999999999999999999999999999986 3445
Q ss_pred HHHHHHHhhccCCCcEEecccCCCCCCC----C--CCCceEeecCCchHHHHHHHHHHHhc--CccEEEEEEEcCc-ccc
Q 002364 108 VAHIVSYVSNELQVPLLSFGVTDPTLSS----L--QYPFFVRTTQSDSYQMTAVAEMVSYY--GWNAVSVIFVDNE-YGR 178 (930)
Q Consensus 108 ~~~~v~~~~~~~~iP~is~~a~~~~l~~----~--~~p~~~r~~p~~~~~~~ai~~~l~~~--~w~~v~ii~~d~~-~g~ 178 (930)
.+.+++.. ..++|+|-.+.++|.-.. . ..+++.-+. +.......++++++. +.++++++|.... ...
T Consensus 80 aa~a~~~~--~~~iPVVf~~v~dp~~~~l~~~~~~~g~nvtGv~--~~~~~~~~l~l~~~l~P~~k~vgvi~~~~~~~s~ 155 (302)
T 3lkv_A 80 TAQALVSA--TKTIPIVFTAVTDPVGAKLVKQLEQPGKNVTGLS--DLSPVEQHVELIKEILPNVKSIGVVYNPGEANAV 155 (302)
T ss_dssp HHHHHHHH--CSSSCEEEEEESCTTTTTSCSCSSSCCSSEEEEE--CCCCHHHHHHHHHHHSTTCCEEEEEECTTCHHHH
T ss_pred HHHHHHhh--cCCCCeEEEecCCcchhhhcccccCCCCcEEEEE--CCcCHHHHHHHHHHhCCCCCEEEEEeCCCcccHH
Confidence 55555443 457999876777765432 1 123444433 222233445555543 6899999996543 344
Q ss_pred chHHHHHHHHhhcceEEEEEEecCCCCCCChhHHHHHHHHHHhCCceEEEEEcChh
Q 002364 179 NGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPS 234 (930)
Q Consensus 179 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~ 234 (930)
...+.+++.+++.|+++...... +..++...+..+.. +.+++++..+..
T Consensus 156 ~~~~~~~~~~~~~g~~~v~~~~~------~~~~~~~~~~~l~~-~~d~i~~~~d~~ 204 (302)
T 3lkv_A 156 SLMELLKLSAAKHGIKLVEATAL------KSADVQSATQAIAE-KSDVIYALIDNT 204 (302)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECS------SGGGHHHHHHHHHT-TCSEEEECSCHH
T ss_pred HHHHHHHHHHHHcCCEEEEEecC------ChHHHHHHHHhccC-CeeEEEEeCCcc
Confidence 55788899999999988754321 25677777777654 688888876653
No 90
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=98.14 E-value=0.00012 Score=77.18 Aligned_cols=197 Identities=8% Similarity=0.017 Sum_probs=126.9
Q ss_pred EEEEEEeeCC-CcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCC-ChhHH
Q 002364 32 VNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQ-CSTVA 109 (930)
Q Consensus 32 i~IG~i~~~s-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~-~s~~~ 109 (930)
.+||++.|.. .++......+++.++++. |+++ .+.++..++....+....++.++|.+||... .....
T Consensus 3 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~--------g~~~--~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~ 72 (290)
T 2fn9_A 3 GKMAIVISTLNNPWFVVLAETAKQRAEQL--------GYEA--TIFDSQNDTAKESAHFDAIIAAGYDAIIFNPTDADGS 72 (290)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHT--------TCEE--EEEECTTCHHHHHHHHHHHHHTTCSEEEECCSCTTTT
T ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHHc--------CCEE--EEeCCCCCHHHHHHHHHHHHHcCCCEEEEecCChHHH
Confidence 4799999853 444456667777766652 4554 4567777777777777788888898887633 33322
Q ss_pred HHHHHhhccCCCcEEecccCCCCCCCCCCCceEe-ecCCchHHHHHHHHHHHhc------CccE--EEEEEEc--Ccccc
Q 002364 110 HIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVR-TTQSDSYQMTAVAEMVSYY------GWNA--VSVIFVD--NEYGR 178 (930)
Q Consensus 110 ~~v~~~~~~~~iP~is~~a~~~~l~~~~~p~~~r-~~p~~~~~~~ai~~~l~~~------~w~~--v~ii~~d--~~~g~ 178 (930)
......+...++|+|......+. . +++.. +..++...+..++++|... |.++ ++++... .....
T Consensus 73 ~~~~~~~~~~~iPvV~~~~~~~~---~--~~~~~~V~~D~~~~~~~~~~~L~~~~g~~~~G~r~i~i~~l~g~~~~~~~~ 147 (290)
T 2fn9_A 73 IANVKRAKEAGIPVFCVDRGINA---R--GLAVAQIYSDNYYGGVLAGEYFVKFLKEKYPDAKEIPYAELLGILSAQPTW 147 (290)
T ss_dssp HHHHHHHHHTTCCEEEESSCCSC---S--SSSSEEEEECHHHHHHHHHHHHHHHHHHHCSSCSCEEEEEEECCTTCHHHH
T ss_pred HHHHHHHHHCCCeEEEEecCCCC---C--CceEEEEeCCHHHHHHHHHHHHHHHhcccCCcccceeEEEEEcCCCCchHH
Confidence 23445566689999987543221 1 22223 6677777788888887776 7888 6666643 23445
Q ss_pred chHHHHHHHHhhc-ceEEEEEEecCCCCCCChhHHHHHHHHHHh--CCceEEEEEcChhhHHHHHHHHHHcCc
Q 002364 179 NGVSALNDKLAER-RCRISYKSGIPPESGVNTGYVMDLLVKVAL--MESRVIVLHVSPSLGFQVFSVAKYLGM 248 (930)
Q Consensus 179 ~~~~~l~~~l~~~-g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~viil~~~~~~~~~~~~~a~~~g~ 248 (930)
.-.+.+++++++. |+++..... .. .+..+....++++.+ .++++|+. .+...+..+++++++.|+
T Consensus 148 ~R~~gf~~~l~~~~g~~~~~~~~--~~--~~~~~~~~~~~~ll~~~~~~~ai~~-~~d~~a~g~~~al~~~g~ 215 (290)
T 2fn9_A 148 DRSNGFHSVVDQYPEFKMVAQQS--AE--FDRDTAYKVTEQILQAHPEIKAIWC-GNDAMALGAMKACEAAGR 215 (290)
T ss_dssp HHHHHHHHHHTTSTTEEEEEEEE--CT--TCHHHHHHHHHHHHHHCTTCCEEEE-SSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCCCEEEEecc--CC--CCHHHHHHHHHHHHHhCCCCcEEEE-CCchHHHHHHHHHHHCCC
Confidence 6678899999998 887653221 11 223444455555543 24677664 566678889999999997
No 91
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=98.14 E-value=5e-05 Score=80.64 Aligned_cols=205 Identities=6% Similarity=-0.089 Sum_probs=132.6
Q ss_pred ceEEEEEEeeCC-CcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCChHHHHHHHHHHHhcCcEEEE-cCCChh
Q 002364 30 AVVNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAII-GPQCST 107 (930)
Q Consensus 30 ~~i~IG~i~~~s-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aii-Gp~~s~ 107 (930)
.+.+||+++|.. .++-.....+++-+.++. |+++.+...+...++....+....++.+++.+|| .|....
T Consensus 4 ~~~~Igvi~~~~~~~~~~~~~~g~~~~a~~~--------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~ 75 (304)
T 3o1i_D 4 SDEKICAIYPHLKDSYWLSVNYGMVSEAEKQ--------GVNLRVLEAGGYPNKSRQEQQLALCTQWGANAIILGTVDPH 75 (304)
T ss_dssp -CCEEEEEESCSCSHHHHHHHHHHHHHHHHH--------TCEEEEEECSSTTCHHHHHHHHHHHHHHTCSEEEECCSSTT
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHHc--------CCeEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChh
Confidence 467899999864 333345556666666553 4555544333333777877788888888888877 444444
Q ss_pred HHHHHHHhhccCCCcEEecccCCCCCCCCCCCceEeecCCchHHHHHHHHHHHhcC-----ccEEEEEEEcC--ccccch
Q 002364 108 VAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYG-----WNAVSVIFVDN--EYGRNG 180 (930)
Q Consensus 108 ~~~~v~~~~~~~~iP~is~~a~~~~l~~~~~p~~~r~~p~~~~~~~ai~~~l~~~~-----w~~v~ii~~d~--~~g~~~ 180 (930)
........+. .++|+|......+.......+.+..+.+++...+..++++|...+ -++++++.... .....-
T Consensus 76 ~~~~~~~~~~-~~iPvV~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~l~~~g~~~~~~~~i~~i~~~~~~~~~~~R 154 (304)
T 3o1i_D 76 AYEHNLKSWV-GNTPVFATVNQLDLDEEQSTLLKGEVGVDWYWMGYEAGKYLAERHPKGSGKTNIALLLGPRTRGGTKPV 154 (304)
T ss_dssp SSTTTHHHHT-TTSCEEECSSCCCCCTTTGGGEEEECCCCHHHHHHHHHHHHHTTSBTTTCCEEEEEECCCC-----CHH
T ss_pred HHHHHHHHHc-CCCCEEEecCCCcccccCCCceEEEEecCHHHHHHHHHHHHHHhcccCCCCCEEEEEECCCCcchHHHH
Confidence 2233345556 899999875443321122335567777888888999999998888 88999997432 344556
Q ss_pred HHHHHHHHhhcceEEEEEEecCCCCCCChhHHHHHHHHHH-hCCceEEEEEcChhhHHHHHHHHHHcCcc
Q 002364 181 VSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVA-LMESRVIVLHVSPSLGFQVFSVAKYLGMM 249 (930)
Q Consensus 181 ~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~-~~~~~viil~~~~~~~~~~~~~a~~~g~~ 249 (930)
.+.+.+++++.|+++.... ... .+.......+.++. ..++++ | +++...+..++++++++|+.
T Consensus 155 ~~gf~~~l~~~~~~~~~~~--~~~--~~~~~~~~~~~~~l~~~~~~a-i-~~~d~~a~g~~~al~~~g~~ 218 (304)
T 3o1i_D 155 TTGFYEAIKNSDIHIVDSF--WAD--NDKELQRNLVQRVIDMGNIDY-I-VGSAVAIEAAISELRSADKT 218 (304)
T ss_dssp HHHHHHTTTTBTEEEEECC--CCC--SCHHHHHHHHHHHHHHSCCSE-E-EECHHHHHHHHHHHTTTTCG
T ss_pred HHHHHHHHhcCCCEEEEee--cCC--CcHHHHHHHHHHHHcCCCCCE-E-EecCcchHHHHHHHHhcCCC
Confidence 7889999999998876432 222 23344444444433 345777 4 55778888899999999975
No 92
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=98.14 E-value=7.7e-05 Score=78.59 Aligned_cols=208 Identities=11% Similarity=-0.060 Sum_probs=137.3
Q ss_pred ceEEEEEEeeCC-CcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCChHHHHHHHHHHHhcCcEEEE-cCCChh
Q 002364 30 AVVNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAII-GPQCST 107 (930)
Q Consensus 30 ~~i~IG~i~~~s-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aii-Gp~~s~ 107 (930)
.+-+||++.|.. .++......+++.+.++. |+++ .+.++..++.........++.++|.+|| .|..+.
T Consensus 4 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~--------g~~~--~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~ 73 (291)
T 3l49_A 4 EGKTIGITAIGTDHDWDLKAYQAQIAEIERL--------GGTA--IALDAGRNDQTQVSQIQTLIAQKPDAIIEQLGNLD 73 (291)
T ss_dssp TTCEEEEEESCCSSHHHHHHHHHHHHHHHHT--------TCEE--EEEECTTCHHHHHHHHHHHHHHCCSEEEEESSCHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHHHc--------CCEE--EEEcCCCCHHHHHHHHHHHHHcCCCEEEEeCCChh
Confidence 356899999964 333345556666666653 4544 4556777777777777888888888887 566656
Q ss_pred HHHHHHHhhccCCCcEEecccCCCCCCCCCCCceEeecCCchHHHHHHHHHHHh--cCccEEEEEEEcCc--cccchHHH
Q 002364 108 VAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSY--YGWNAVSVIFVDNE--YGRNGVSA 183 (930)
Q Consensus 108 ~~~~v~~~~~~~~iP~is~~a~~~~l~~~~~p~~~r~~p~~~~~~~ai~~~l~~--~~w~~v~ii~~d~~--~g~~~~~~ 183 (930)
........+...++|+|......+ +.+..+..++...+..+++++.. .|-++++++..+.. ....-.+.
T Consensus 74 ~~~~~~~~~~~~~iPvV~~~~~~~-------~~~~~V~~D~~~~g~~~~~~l~~~~~g~~~i~~i~~~~~~~~~~~R~~g 146 (291)
T 3l49_A 74 VLNPWLQKINDAGIPLFTVDTATP-------HAINNTTSNNYSIGAELALQMVADLGGKGNVLVFNGFYSVPVCKIRYDQ 146 (291)
T ss_dssp HHHHHHHHHHHTTCCEEEESCCCT-------TCSEEEEECHHHHHHHHHHHHHHHHTTCEEEEEECSCTTSHHHHHHHHH
T ss_pred hhHHHHHHHHHCCCcEEEecCCCC-------CcCceEecChHHHHHHHHHHHHHHcCCCceEEEEeCCCCCchHHHHHHH
Confidence 666677778888999998754332 12345667778888889998887 89999999974322 33445778
Q ss_pred HHHHHhhc-ceEEEEEEecCCCCCCChhHHHHHHHHHHhC-----CceEEEEEcChhhHHHHHHHHHHcCcccCCeEEEE
Q 002364 184 LNDKLAER-RCRISYKSGIPPESGVNTGYVMDLLVKVALM-----ESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIA 257 (930)
Q Consensus 184 l~~~l~~~-g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~-----~~~viil~~~~~~~~~~~~~a~~~g~~~~~~~~i~ 257 (930)
+++++++. |+++.....+... ..+.......+.++.+. ++++| ++.+...+..+++++++.|+. +...++
T Consensus 147 f~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~ai-~~~~d~~a~g~~~al~~~g~~--di~vvg 222 (291)
T 3l49_A 147 MKYVLEAFPDVKIIEPELRDVI-PNTIQSAYSNVTDMLTKYPNEGDVGAI-WACWDVPMIGATQALQAAGRT--DIRTYG 222 (291)
T ss_dssp HHHHHHTCTTEEECSSCBCCCS-SSHHHHHHHHHHHHHHHCCSTTSCCEE-EESSHHHHHHHHHHHHHTTCC--SCEEEE
T ss_pred HHHHHHHCCCCEEEeeeccCCC-CCCHHHHHHHHHHHHHhCCCcCCcCEE-EECCCchHHHHHHHHHHcCCC--CeEEEE
Confidence 89999988 6775432222221 01233444455555443 46666 456677888899999999985 444444
Q ss_pred e
Q 002364 258 T 258 (930)
Q Consensus 258 ~ 258 (930)
.
T Consensus 223 ~ 223 (291)
T 3l49_A 223 V 223 (291)
T ss_dssp E
T ss_pred e
Confidence 3
No 93
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=98.12 E-value=8.1e-05 Score=78.94 Aligned_cols=211 Identities=10% Similarity=-0.014 Sum_probs=133.5
Q ss_pred CceEEEEEEeeCC--CcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEe-cCCCChHHHHHHHHHHHhcCcEEEEc-CC
Q 002364 29 PAVVNVGALFTLD--STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQ-SSNCSGFIGMVEALRFMETDIVAIIG-PQ 104 (930)
Q Consensus 29 ~~~i~IG~i~~~s--~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~l~~~-D~~~~~~~a~~~a~~li~~~v~aiiG-p~ 104 (930)
..+.+||+++|.. .++-.....+++.+.++. +|+.+.+... ++..++....+....++.+++.+||- |.
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~-------~g~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~ 78 (304)
T 3gbv_A 6 NKKYTFACLLPKHLEGEYWTDVQKGIREAVTTY-------SDFNISANITHYDPYDYNSFVATSQAVIEEQPDGVMFAPT 78 (304)
T ss_dssp -CCEEEEEEEECCCTTSHHHHHHHHHHHHHHHT-------GGGCEEEEEEEECSSCHHHHHHHHHHHHTTCCSEEEECCS
T ss_pred CCcceEEEEecCCCCchHHHHHHHHHHHHHHHH-------HhCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEECCC
Confidence 4578999999974 444445566666666553 1456666554 34556766666677778888888874 44
Q ss_pred ChhHHHHHHHhhccCCCcEEecccCCCCCCCCCCCceEeecCCchHHHHHHHHHHHhcCc--cEEEEEEEc------Ccc
Q 002364 105 CSTVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGW--NAVSVIFVD------NEY 176 (930)
Q Consensus 105 ~s~~~~~v~~~~~~~~iP~is~~a~~~~l~~~~~p~~~r~~p~~~~~~~ai~~~l~~~~w--~~v~ii~~d------~~~ 176 (930)
...........+...++|+|......+.. +.+-.+.+++...+..++++|...|. ++++++..+ ...
T Consensus 79 ~~~~~~~~~~~~~~~~iPvV~~~~~~~~~-----~~~~~V~~D~~~~g~~a~~~l~~~g~~~~~i~~i~~~~~g~~~~~~ 153 (304)
T 3gbv_A 79 VPQYTKGFTDALNELGIPYIYIDSQIKDA-----PPLAFFGQNSHQSGYFAARMLMLLAVNDREIVIFRKIHEGVIGSNQ 153 (304)
T ss_dssp SGGGTHHHHHHHHHHTCCEEEESSCCTTS-----CCSEEEECCHHHHHHHHHHHHHHHSTTCSEEEEEEEEBTTBCCCHH
T ss_pred ChHHHHHHHHHHHHCCCeEEEEeCCCCCC-----CceEEEecChHHHHHHHHHHHHHHhCCCCeEEEEEecccCCccchh
Confidence 44444555666677799999876433221 12455667888888999999888877 999999733 223
Q ss_pred ccchHHHHHHHHhhcceE--EEEEEecCCCCCCChhHHHHHHHHHHh--CCceEEEEEcChhhHHHHHHHHHHcCcccCC
Q 002364 177 GRNGVSALNDKLAERRCR--ISYKSGIPPESGVNTGYVMDLLVKVAL--MESRVIVLHVSPSLGFQVFSVAKYLGMMGNG 252 (930)
Q Consensus 177 g~~~~~~l~~~l~~~g~~--v~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~viil~~~~~~~~~~~~~a~~~g~~~~~ 252 (930)
...-.+.+.+++++.|.. +.....-... .......+.++.+ .++++|+...+. +..++++++++|+ .+
T Consensus 154 ~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~ai~~~~d~--a~g~~~al~~~g~--~d 225 (304)
T 3gbv_A 154 QESREIGFRQYMQEHHPACNILELNLHADL----NIEDSRMLDDFFREHPDVKHGITFNSK--VYIIGEYLQQRRK--SD 225 (304)
T ss_dssp HHHHHHHHHHHHHHHCTTSEEEEEEEESSC----SSCHHHHHHHHHHHCTTCCEEEESSSC--THHHHHHHHHTTC--CS
T ss_pred HHHHHHHHHHHHHhhCCCcEEEEeeecCCC----HHHHHHHHHHHHHhCCCeEEEEEcCcc--hHHHHHHHHHcCC--CC
Confidence 455678899999988754 3322111111 2222333444333 357777766554 7779999999998 44
Q ss_pred eEEEEeC
Q 002364 253 YVWIATD 259 (930)
Q Consensus 253 ~~~i~~~ 259 (930)
...++.|
T Consensus 226 i~vig~d 232 (304)
T 3gbv_A 226 FSLIGYD 232 (304)
T ss_dssp CEEEEES
T ss_pred cEEEEeC
Confidence 4555544
No 94
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=98.09 E-value=0.00015 Score=76.22 Aligned_cols=201 Identities=12% Similarity=0.045 Sum_probs=127.5
Q ss_pred ceEEEEEEeeCC-CcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCChhH
Q 002364 30 AVVNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCSTV 108 (930)
Q Consensus 30 ~~i~IG~i~~~s-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~s~~ 108 (930)
.+.+||++.|.. .++......+++.+.++ .|+++.+ .++..++.........++.++|.+||.......
T Consensus 7 ~~~~Igvi~~~~~~~~~~~~~~gi~~~~~~--------~g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~ 76 (285)
T 3c3k_A 7 KTGMLLVMVSNIANPFCAAVVKGIEKTAEK--------NGYRILL--CNTESDLARSRSCLTLLSGKMVDGVITMDALSE 76 (285)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHHHHHHHH--------TTCEEEE--EECTTCHHHHHHHTHHHHTTCCSEEEECCCGGG
T ss_pred CCCEEEEEeCCCCCchHHHHHHHHHHHHHH--------cCCEEEE--EeCCCCHHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence 457899999853 44444556666666654 2566544 456666666666667777778998886433322
Q ss_pred HHHHHHhhccCCCcEEecccCCCCCCCCCCCceEeecCCchHHHHHHHHHHHhcCccEEEEEEEcC--ccccchHHHHHH
Q 002364 109 AHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDN--EYGRNGVSALND 186 (930)
Q Consensus 109 ~~~v~~~~~~~~iP~is~~a~~~~l~~~~~p~~~r~~p~~~~~~~ai~~~l~~~~w~~v~ii~~d~--~~g~~~~~~l~~ 186 (930)
...+ ..+. .++|+|......+ + +.+..+..++...+..++++|...|-++++++..+. .....-.+.+.+
T Consensus 77 ~~~~-~~l~-~~iPvV~~~~~~~---~---~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~gf~~ 148 (285)
T 3c3k_A 77 LPEL-QNII-GAFPWVQCAEYDP---L---STVSSVSIDDVAASEYVVDQLVKSGKKRIALINHDLAYQYAQHRESGYLN 148 (285)
T ss_dssp HHHH-HHHH-TTSSEEEESSCCT---T---SSSCEEECCHHHHHHHHHHHHHHTTCCCEEEEECCTTSHHHHHHHHHHHH
T ss_pred hHHH-HHHh-cCCCEEEEccccC---C---CCCCEEEEChHHHHHHHHHHHHHcCCCeEEEEeCCCccccHHHHHHHHHH
Confidence 2233 3345 8999998754322 1 223445677777788888988888999999998543 234555778899
Q ss_pred HHhhcceEEEEEEecCCCCCCChhHHHHHHHH--HHhC--CceEEEEEcChhhHHHHHHHHHHcCcccCCeE
Q 002364 187 KLAERRCRISYKSGIPPESGVNTGYVMDLLVK--VALM--ESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYV 254 (930)
Q Consensus 187 ~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~--l~~~--~~~viil~~~~~~~~~~~~~a~~~g~~~~~~~ 254 (930)
++++.|+++. ...-. .+..+....+.+ +.+. ++++|+. .+...+..+++++++.|+..++-+
T Consensus 149 ~l~~~g~~~~-~~~~~----~~~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~A~g~~~al~~~g~~vP~di 214 (285)
T 3c3k_A 149 RLKFHGLDYS-RISYA----ENLDYMAGKLATFSLLKSAVKPDAIFA-ISDVLAAGAIQALTESGLSIPQDV 214 (285)
T ss_dssp HHHHHTCCCC-EEEEC----SSSSHHHHHHHHHHHHSSSSCCSEEEE-SSHHHHHHHHHHHHHTTCCTTTTC
T ss_pred HHHHcCCCce-EeecC----CChHHHHHHHHHHHHHcCCCCCeEEEE-CCHHHHHHHHHHHHHcCCCCCCce
Confidence 9999887643 11111 113333445555 5443 4676654 566678889999999998654433
No 95
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=98.09 E-value=0.00018 Score=76.42 Aligned_cols=204 Identities=10% Similarity=0.023 Sum_probs=129.7
Q ss_pred EEEEEEeeCC-CcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCC-ChhHH
Q 002364 32 VNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQ-CSTVA 109 (930)
Q Consensus 32 i~IG~i~~~s-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~-~s~~~ 109 (930)
-+||++.|.. .++......+++.++++. |+ +++.+.++..++.........++.++|.+||-.. .....
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~-~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~ 73 (309)
T 2fvy_A 3 TRIGVTIYKYDDNFMSVVRKAIEQDAKAA--------PD-VQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAA 73 (309)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHHHHTC--------TT-EEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSSGGGH
T ss_pred cEEEEEeccCCcHHHHHHHHHHHHHHHhc--------CC-eEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeCCCcchh
Confidence 5799999853 333344455555555432 44 2455567777777777777778888898887533 33333
Q ss_pred HHHHHhhccCCCcEEecccCCCCCCCCCCCceEeecCCchHHHHHHHHHHHh------------cCccEEEEEEEc--Cc
Q 002364 110 HIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSY------------YGWNAVSVIFVD--NE 175 (930)
Q Consensus 110 ~~v~~~~~~~~iP~is~~a~~~~l~~~~~p~~~r~~p~~~~~~~ai~~~l~~------------~~w~~v~ii~~d--~~ 175 (930)
......+...++|+|......+...-..++.+..+..++...+..++++|.. .|-++++++... ..
T Consensus 74 ~~~~~~~~~~~iPvV~~~~~~~~~~~~~~~~~~~V~~d~~~~g~~~~~~L~~~~~~~~~~~~~g~g~~~i~~i~~~~~~~ 153 (309)
T 2fvy_A 74 GTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHP 153 (309)
T ss_dssp HHHHHHHHTTTCCEEEESSCCCHHHHHTCTTEEEEECCHHHHHHHHHHHHHHHHHHCGGGCTTCSSSEEEEEEECSTTCH
T ss_pred HHHHHHHHHCCCcEEEecCCCCcccccccCccEEEecCHHHHHHHHHHHHHHHHhhcccccccCCCceEEEEEEcCCCCc
Confidence 4455666778999998754321100011345667778888888888888766 677899999854 33
Q ss_pred cccchHHHHHHHHhhcceEEEEEEecCCCCCCChhHHHHHHHHHHhC----CceEEEEEcChhhHHHHHHHHHHcC
Q 002364 176 YGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALM----ESRVIVLHVSPSLGFQVFSVAKYLG 247 (930)
Q Consensus 176 ~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~----~~~viil~~~~~~~~~~~~~a~~~g 247 (930)
....-.+.+++++++.|+.+.....+... .+.......++++.+. ++++|+. .+...+..++++++++|
T Consensus 154 ~~~~R~~gf~~~l~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~ai~~-~~d~~a~g~~~al~~~g 226 (309)
T 2fvy_A 154 DAEARTTYVIKELNDKGIKTEQLQLDTAM--WDTAQAKDKMDAWLSGPNANKIEVVIA-NNDAMAMGAVEALKAHN 226 (309)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEEEEECT--TCHHHHHHHHHHHHTSTTGGGCCEEEE-SSHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHhcCCceEEEEEecCC--CCHHHHHHHHHHHHHhCCCCCccEEEE-CCchhHHHHHHHHHHcC
Confidence 44556788999999998765432222222 2344445556665543 4666554 55667788999999988
No 96
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=98.08 E-value=0.00014 Score=76.60 Aligned_cols=210 Identities=11% Similarity=-0.010 Sum_probs=132.4
Q ss_pred CceEEEEEEeeCC-CcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCChh
Q 002364 29 PAVVNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCST 107 (930)
Q Consensus 29 ~~~i~IG~i~~~s-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~s~ 107 (930)
..+-+||++.|.. .++-.....+++.+.++. |+++. +.++..++.........++.++|.+||......
T Consensus 18 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~--------g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~ 87 (293)
T 2iks_A 18 GRTRSIGLVIPDLENTSYTRIANYLERQARQR--------GYQLL--IACSEDQPDNEMRCIEHLLQRQVDAIIVSTSLP 87 (293)
T ss_dssp CCCCEEEEEESCSCSHHHHHHHHHHHHHHHHT--------TCEEE--EEECTTCHHHHHHHHHHHHHTTCSEEEECCSSC
T ss_pred CCCcEEEEEeCCCcCcHHHHHHHHHHHHHHHC--------CCEEE--EEcCCCCHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 3467899999853 333344556666555542 55554 456666776666667777778898887533322
Q ss_pred HHHHHHHhhccCCCcEEecccCCCCCCCCCCCceEeecCCchHHHHHHHHHHHhcCccEEEEEEEcC--ccccchHHHHH
Q 002364 108 VAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDN--EYGRNGVSALN 185 (930)
Q Consensus 108 ~~~~v~~~~~~~~iP~is~~a~~~~l~~~~~p~~~r~~p~~~~~~~ai~~~l~~~~w~~v~ii~~d~--~~g~~~~~~l~ 185 (930)
....+...+...++|+|......+ + +.+..+..++...+..++++|...|.++++++.... .....-.+.+.
T Consensus 88 ~~~~~~~~~~~~~iPvV~~~~~~~---~---~~~~~V~~d~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~ 161 (293)
T 2iks_A 88 PEHPFYQRWANDPFPIVALDRALD---R---EHFTSVVGADQDDAEMLAEELRKFPAETVLYLGALPELSVSFLREQGFR 161 (293)
T ss_dssp TTCHHHHTTTTSSSCEEEEESCCC---T---TTCEEEEECHHHHHHHHHHHHHTSCCSSEEEEEECTTSHHHHHHHHHHH
T ss_pred CcHHHHHHHHhCCCCEEEECCccC---c---CCCCEEEecCHHHHHHHHHHHHHCCCCEEEEEecCcccccHHHHHHHHH
Confidence 222344556678999998754322 1 223456677777888889998888999999998643 23455678899
Q ss_pred HHHhhcceEEEEEEecCCCCCCChhHHHHHHHHHHhC--CceEEEEEcChhhHHHHHHHHHHcCcccCC-eEEEEeC
Q 002364 186 DKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALM--ESRVIVLHVSPSLGFQVFSVAKYLGMMGNG-YVWIATD 259 (930)
Q Consensus 186 ~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viil~~~~~~~~~~~~~a~~~g~~~~~-~~~i~~~ 259 (930)
+++++.|.+..... ... .+..+....+.++.+. .+++|+. .+...+..+++++++.|+..++ ...++.|
T Consensus 162 ~~l~~~g~~~~~~~--~~~--~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~a~g~~~al~~~g~~vP~di~vvg~d 233 (293)
T 2iks_A 162 TAWKDDPREVHFLY--ANS--YEREAAAQLFEKWLETHPMPQALFT-TSFALLQGVMDVTLRRDGKLPSDLAIATFG 233 (293)
T ss_dssp HHHTTCCCCEEEEE--ESS--SCHHHHHHHHHHHTTTSCCCSEEEE-SSHHHHHHHHHHHHHHHSSCCSSCEEEEES
T ss_pred HHHHHcCCCccEEE--cCC--CChhhHHHHHHHHHhcCCCCCEEEE-CChHHHHHHHHHHHHcCCCCCCceEEEEEC
Confidence 99999887433221 111 2244444556666443 3666554 5566788899999999986444 4444443
No 97
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=98.08 E-value=0.00029 Score=74.71 Aligned_cols=211 Identities=9% Similarity=-0.034 Sum_probs=135.7
Q ss_pred eEEEEEEeeCC-CcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEc-CCChhH
Q 002364 31 VVNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIG-PQCSTV 108 (930)
Q Consensus 31 ~i~IG~i~~~s-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiG-p~~s~~ 108 (930)
.-+||++.+.. .++-.....+++.+.++. |+++.+. .++..++....+....++.+++.+||- |.....
T Consensus 4 ~~~I~~i~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~~-~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~ 74 (305)
T 3g1w_A 4 NETYMMITFQSGMDYWKRCLKGFEDAAQAL--------NVTVEYR-GAAQYDIQEQITVLEQAIAKNPAGIAISAIDPVE 74 (305)
T ss_dssp -CEEEEEESSTTSTHHHHHHHHHHHHHHHH--------TCEEEEE-ECSSSCHHHHHHHHHHHHHHCCSEEEECCSSTTT
T ss_pred CceEEEEEccCCChHHHHHHHHHHHHHHHc--------CCEEEEe-CCCcCCHHHHHHHHHHHHHhCCCEEEEcCCCHHH
Confidence 35788888864 344445667777777664 4555442 467778877777778888888888874 444443
Q ss_pred HHHHHHhhccCCCcEEecccCCCCCCCCCCCceEeecCCchHHHHHHHHHHHhc--CccEEEEEEEcCc-cccchHHHHH
Q 002364 109 AHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYY--GWNAVSVIFVDNE-YGRNGVSALN 185 (930)
Q Consensus 109 ~~~v~~~~~~~~iP~is~~a~~~~l~~~~~p~~~r~~p~~~~~~~ai~~~l~~~--~w~~v~ii~~d~~-~g~~~~~~l~ 185 (930)
.......+.+.++|+|......+. .+.+..+.+++...+..++++|... |-++++++..... ....-.+.++
T Consensus 75 ~~~~~~~~~~~~iPvV~~~~~~~~-----~~~~~~V~~d~~~~g~~~~~~l~~~~~g~~~i~~i~~~~~~~~~~R~~gf~ 149 (305)
T 3g1w_A 75 LTDTINKAVDAGIPIVLFDSGAPD-----SHAHSFLGTNNYNAGMNAAYKMAELLDGEGEVAVITLPNQLNHQERTTGFK 149 (305)
T ss_dssp THHHHHHHHHTTCCEEEESSCCTT-----SCCSCEEECCHHHHHHHHHHHHHHHTTTCEEEEEEECTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCcEEEECCCCCC-----CceeEEECcCHHHHHHHHHHHHHHHhCCCcEEEEEeCCCcccHHHHHHHHH
Confidence 444556667789999987554321 1224456678888899999988877 8999999985432 3334467888
Q ss_pred HHHhhcceEEEEEEecCCCCCCChhHHHHHHHHHHhC--CceEEEEEcChhhHHHHHHHHHHcCcccCCeEEEEeC
Q 002364 186 DKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALM--ESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATD 259 (930)
Q Consensus 186 ~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viil~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~ 259 (930)
+++++.|..+.....+... .+.......+.++.+. ++++|+ +.+...+..++++++++|+. .+...++.|
T Consensus 150 ~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~-~di~vig~d 221 (305)
T 3g1w_A 150 ETLEAEFPAIEVIAVEDGR--GDSLHSRRVAHQLLEDYPNLAGIF-ATEANGGVGVGDAVRLESRA-GEIQIISFD 221 (305)
T ss_dssp HHHHHHCTTEEEEEEEECT--TCHHHHHHHHHHHHHHCTTEEEEE-ESSHHHHHHHHHHHHHTTCT-TTSEEEEES
T ss_pred HHHHhhCCCCEEEEEecCC--CCHHHHHHHHHHHHHhCCCceEEE-ECCCcchhhHHHHHHhcCCC-CCeEEEEeC
Confidence 8998876544332222222 2344555555555443 345443 45667788899999999986 444555544
No 98
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=98.08 E-value=0.00031 Score=73.60 Aligned_cols=205 Identities=10% Similarity=0.127 Sum_probs=127.8
Q ss_pred EEEEEeeCC-CcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEc-CCChhHHH
Q 002364 33 NVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIG-PQCSTVAH 110 (930)
Q Consensus 33 ~IG~i~~~s-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiG-p~~s~~~~ 110 (930)
+||++.|.. .++......+++.+.++. |+++ .+.++..++.........++.++|.+||- |.......
T Consensus 3 ~Igvi~~~~~~~f~~~~~~gi~~~~~~~--------g~~~--~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~ 72 (283)
T 2ioy_A 3 TIGLVISTLNNPFFVTLKNGAEEKAKEL--------GYKI--IVEDSQNDSSKELSNVEDLIQQKVDVLLINPVDSDAVV 72 (283)
T ss_dssp EEEEEESCSSSHHHHHHHHHHHHHHHHH--------TCEE--EEEECTTCHHHHHHHHHHHHHTTCSEEEECCSSTTTTH
T ss_pred EEEEEecCCCCHHHHHHHHHHHHHHHhc--------CcEE--EEecCCCCHHHHHHHHHHHHHcCCCEEEEeCCchhhhH
Confidence 689998853 444445566777666653 4544 44566677777666777788888888764 44433323
Q ss_pred HHHHhhccCCCcEEecccCCCCCCCCCCCceEeecCCchHHHHHHHHHHHhc-C-ccEEEEEEEcCc--cccchHHHHHH
Q 002364 111 IVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYY-G-WNAVSVIFVDNE--YGRNGVSALND 186 (930)
Q Consensus 111 ~v~~~~~~~~iP~is~~a~~~~l~~~~~p~~~r~~p~~~~~~~ai~~~l~~~-~-w~~v~ii~~d~~--~g~~~~~~l~~ 186 (930)
.....+...++|+|......+ + .+.+..+..++...+..++++|... | -++++++..... ....-.+.+++
T Consensus 73 ~~~~~~~~~~iPvV~~~~~~~---~--~~~~~~V~~D~~~~g~~a~~~L~~~~gg~~~I~~i~g~~~~~~~~~R~~Gf~~ 147 (283)
T 2ioy_A 73 TAIKEANSKNIPVITIDRSAN---G--GDVVCHIASDNVKGGEMAAEFIAKALKGKGNVVELEGIPGASAARDRGKGFDE 147 (283)
T ss_dssp HHHHHHHHTTCCEEEESSCCS---S--SCCSEEEEECHHHHHHHHHHHHHHHTTTCEEEEEEECCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCeEEEecCCCC---C--cceeEEEecChHHHHHHHHHHHHHHcCCCceEEEEECCCCCccHHHHHHHHHH
Confidence 344556678999998754221 1 1123345566777788888887665 5 899999985432 23455678899
Q ss_pred HHhhc-ceEEEEEEecCCCCCCChhHHHHHHHHHHhC--CceEEEEEcChhhHHHHHHHHHHcCcccCCeEEEEeC
Q 002364 187 KLAER-RCRISYKSGIPPESGVNTGYVMDLLVKVALM--ESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATD 259 (930)
Q Consensus 187 ~l~~~-g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viil~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~ 259 (930)
++++. |+++.....- . .+..+....++++.+. .+++| ++.+...+..+++++++.|+ .+...++.|
T Consensus 148 al~~~~~~~~~~~~~~--~--~~~~~~~~~~~~ll~~~~~~~ai-~~~nD~~A~g~~~al~~~G~--~di~viG~D 216 (283)
T 2ioy_A 148 AIAKYPDIKIVAKQAA--D--FDRSKGLSVMENILQAQPKIDAV-FAQNDEMALGAIKAIEAANR--QGIIVVGFD 216 (283)
T ss_dssp HHTTCTTEEEEEEEEC--T--TCHHHHHHHHHHHHHHCSCCCEE-EESSHHHHHHHHHHHHHTTC--CCCEEEEEE
T ss_pred HHHhCCCCEEEeeccC--C--CCHHHHHHHHHHHHHhCCCccEE-EECCchHHHHHHHHHHHCCC--CCcEEEEeC
Confidence 99988 8876533221 1 2244444455555443 34554 45566778889999999997 344444433
No 99
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=98.07 E-value=0.00027 Score=76.72 Aligned_cols=215 Identities=12% Similarity=0.014 Sum_probs=138.9
Q ss_pred eEEEEEEeeCCC--cchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCChHHHHHHHHHHHh--cCcEEEEcCCCh
Q 002364 31 VVNVGALFTLDS--TIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFME--TDIVAIIGPQCS 106 (930)
Q Consensus 31 ~i~IG~i~~~s~--~~g~~~~~a~~~Av~~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~--~~v~aiiGp~~s 106 (930)
..+||++.|... ++-.....+++-+.++. |+++. +.++..++....+...+++. +++.+||-....
T Consensus 3 ~~~Ig~i~p~~~~~~f~~~~~~g~~~~a~~~--------g~~~~--~~~~~~~~~~~~~~i~~~i~~~~~vDgiIi~~~~ 72 (350)
T 3h75_A 3 LTSVVFLNPGNSTETFWVSYSQFMQAAARDL--------GLDLR--ILYAERDPQNTLQQARELFQGRDKPDYLMLVNEQ 72 (350)
T ss_dssp CCEEEEEECSCTTCHHHHHHHHHHHHHHHHH--------TCEEE--EEECTTCHHHHHHHHHHHHHSSSCCSEEEEECCS
T ss_pred CCEEEEECCCCCCChHHHHHHHHHHHHHHHc--------CCeEE--EEECCCCHHHHHHHHHHHHhcCCCCCEEEEeCch
Confidence 468999999752 44456667777777664 45544 45777788888888888998 488887654344
Q ss_pred hHHHHHHHhhccCCCcEEecccCCCCCCC-------CCCC-ceEeecCCchHHHHHHHHHHHhcC------c-cEEEEEE
Q 002364 107 TVAHIVSYVSNELQVPLLSFGVTDPTLSS-------LQYP-FFVRTTQSDSYQMTAVAEMVSYYG------W-NAVSVIF 171 (930)
Q Consensus 107 ~~~~~v~~~~~~~~iP~is~~a~~~~l~~-------~~~p-~~~r~~p~~~~~~~ai~~~l~~~~------w-~~v~ii~ 171 (930)
.....+...+...++|+|......+.... ..++ ++..+.+++...+..++++|...+ - ++++++.
T Consensus 73 ~~~~~~~~~~~~~giPvV~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~g~~~~~g~~~~i~~i~ 152 (350)
T 3h75_A 73 YVAPQILRLSQGSGIKLFIVNSPLTLDQRELIGQSRQNYSDWIGSMVGDDEEAGYRMLKELLHKLGPVPAGHGIELLAFS 152 (350)
T ss_dssp SHHHHHHHHHTTSCCEEEEEESCCCTTTC------------CEEEEECCHHHHHHHHHHHHHHHHCCCCSSCCEEEEEEE
T ss_pred hhHHHHHHHHHhCCCcEEEEcCCCChHHHhhhcCCchhccceeeeecCChHHHHHHHHHHHHHHhhhhcCCCCceEEEEe
Confidence 45566677788899999987655443221 1122 266677888888888898877665 4 7999987
Q ss_pred EcC--ccccchHHHHHHHHhhcce-EEEEEEecCCCCCCChhHHHHHHHHHHhCCceEE-EEEcChhhHHHHHHHHHHcC
Q 002364 172 VDN--EYGRNGVSALNDKLAERRC-RISYKSGIPPESGVNTGYVMDLLVKVALMESRVI-VLHVSPSLGFQVFSVAKYLG 247 (930)
Q Consensus 172 ~d~--~~g~~~~~~l~~~l~~~g~-~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vi-il~~~~~~~~~~~~~a~~~g 247 (930)
.+. .....-.+.+.+++++.|. .+... +... .+.......+.++.+..+++- |++++...+..++++++++|
T Consensus 153 g~~~~~~~~~R~~Gf~~~l~~~~~~~~~~~--~~~~--~~~~~~~~~~~~~L~~~~~~~aI~~~~d~~a~g~~~al~~~G 228 (350)
T 3h75_A 153 GLKVTPAAQLRERGLRRALAEHPQVHLRQL--VYGE--WNRERAYRQAQQLLKRYPKTQLVWSANDEMALGAMQAARELG 228 (350)
T ss_dssp SCTTSHHHHHHHHHHHHHHHHCTTEEEEEE--EECT--TCHHHHHHHHHHHHHHCTTEEEEEESSHHHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCeEEEEE--eeCC--CcHHHHHHHHHHHHHhCCCcCEEEECChHHHHHHHHHHHHcC
Confidence 442 2344557889999999885 22222 2222 234555555666554444332 34456677888999999999
Q ss_pred cccCC-eEEEEeC
Q 002364 248 MMGNG-YVWIATD 259 (930)
Q Consensus 248 ~~~~~-~~~i~~~ 259 (930)
+..++ ...++.|
T Consensus 229 ~~vP~di~vvg~d 241 (350)
T 3h75_A 229 RKPGTDLLFSGVN 241 (350)
T ss_dssp CCBTTTBEEEEES
T ss_pred CCCCCCeEEEecC
Confidence 86444 4444443
No 100
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=98.07 E-value=0.00034 Score=73.77 Aligned_cols=200 Identities=9% Similarity=0.088 Sum_probs=128.7
Q ss_pred eEEEEEEeeCCCcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCChhHHH
Q 002364 31 VVNVGALFTLDSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCSTVAH 110 (930)
Q Consensus 31 ~i~IG~i~~~s~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~s~~~~ 110 (930)
+.+||++-+.+.+.-.....|++-++++ .|- .|.++.+.+.|+.+++.+.......+.+++|++||...+ ....
T Consensus 2 ~~~Igvi~~~~~p~~~~i~~gi~~~l~~---~gy--~g~~v~l~~~~~~~~~~~~~~~~~~l~~~~vDgII~~~~-~~~~ 75 (295)
T 3lft_A 2 NAKIGVLQFVSHPSLDLIYKGIQDGLAE---EGY--KDDQVKIDFMNSEGDQSKVATMSKQLVANGNDLVVGIAT-PAAQ 75 (295)
T ss_dssp CEEEEEEECSCCHHHHHHHHHHHHHHHH---TTC--CGGGEEEEEEECTTCHHHHHHHHHHHTTSSCSEEEEESH-HHHH
T ss_pred ceEEEEEEccCChhHHHHHHHHHHHHHH---cCC--CCCceEEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCc-HHHH
Confidence 4689988333443333444555544443 332 366888989999999998888888888888999887542 2333
Q ss_pred HHHHhhccCCCcEEecccCCCCCCC------CCCCceEeecCCchHHHHHHHHHHHhc--CccEEEEEEEcCc-cccchH
Q 002364 111 IVSYVSNELQVPLLSFGVTDPTLSS------LQYPFFVRTTQSDSYQMTAVAEMVSYY--GWNAVSVIFVDNE-YGRNGV 181 (930)
Q Consensus 111 ~v~~~~~~~~iP~is~~a~~~~l~~------~~~p~~~r~~p~~~~~~~ai~~~l~~~--~w~~v~ii~~d~~-~g~~~~ 181 (930)
.+... ..++|+|..+..++.... ....++.... +..-+...++++... |-+++++++.+.. .++...
T Consensus 76 ~~~~~--~~~iPvV~~~~~~~~~~~~v~~~~~~~~~~~gv~--~~~~~~~~~~~l~~~~pg~~~I~~i~~~~~~~~~~r~ 151 (295)
T 3lft_A 76 GLASA--TKDLPVIMAAITDPIGANLVKDLKKPGGNVTGVS--DHNPAQQQVELIKALTPNVKTIGALYSSSEDNSKTQV 151 (295)
T ss_dssp HHHHH--CSSSCEEEESCSCTTTTTSCSCSSCCCSSEEEEE--ECCCHHHHHHHHHHHCTTCCEEEEEEETTCHHHHHHH
T ss_pred HHHHc--CCCCCEEEEeccChhhcCccccccCCCCcEEEEE--CCccHHHHHHHHHHhCCCCcEEEEEeCCCCcchHHHH
Confidence 33322 479999976654443211 0112343333 333356667777776 8999999997644 345567
Q ss_pred HHHHHHHhhcceEEEEEEecCCCCCCChhHHHHHHHHHHhCCceEEEEEcChhhHHHHHHHHHHcCc
Q 002364 182 SALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGM 248 (930)
Q Consensus 182 ~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~~~~~a~~~g~ 248 (930)
+.+++++++.|+++...... . ..+....++++.. ++++|++..+ ..+...++++.+.+.
T Consensus 152 ~g~~~al~~~gi~~~~~~~~--~----~~~~~~~~~~l~~-~~dai~~~~D-~~a~g~~~~l~~~~~ 210 (295)
T 3lft_A 152 EEFKAYAEKAGLTVETFAVP--S----TNEIASTVTVMTS-KVDAIWVPID-NTIASGFPTVVSSNQ 210 (295)
T ss_dssp HHHHHHHHHTTCEEEEEEES--S----GGGHHHHHHHHTT-TCSEEEECSC-HHHHHTHHHHHHHTT
T ss_pred HHHHHHHHHcCCEEEEEecC--C----HHHHHHHHHHHHh-cCCEEEECCc-hhHHHHHHHHHHHHH
Confidence 88999999999987654322 1 4566777887764 6888877654 455556677777664
No 101
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=98.05 E-value=0.00024 Score=74.87 Aligned_cols=208 Identities=10% Similarity=0.014 Sum_probs=134.7
Q ss_pred CceEEEEEEeeCC-CcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEc-CCCh
Q 002364 29 PAVVNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIG-PQCS 106 (930)
Q Consensus 29 ~~~i~IG~i~~~s-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiG-p~~s 106 (930)
..+-+||+++|.. .++-.....+++.+.++. |+++ .+.++..++....+....++.+++.+||- |...
T Consensus 6 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~--------g~~~--~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~ 75 (293)
T 3l6u_A 6 PKRNIVGFTIVNDKHEFAQRLINAFKAEAKAN--------KYEA--LVATSQNSRISEREQILEFVHLKVDAIFITTLDD 75 (293)
T ss_dssp ---CEEEEEESCSCSHHHHHHHHHHHHHHHHT--------TCEE--EEEECSSCHHHHHHHHHHHHHTTCSEEEEECSCT
T ss_pred CCCcEEEEEEecCCcHHHHHHHHHHHHHHHHc--------CCEE--EEECCCCCHHHHHHHHHHHHHcCCCEEEEecCCh
Confidence 3467899999864 333344556666555553 4544 45667777777777788888888888764 4444
Q ss_pred hHHHHHHHhhccCCCcEEecccCCCCCCCCCCCceEeecCCchHHHHHHHHHHHh-c-Ccc-----EEEEEEEc--Cccc
Q 002364 107 TVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSY-Y-GWN-----AVSVIFVD--NEYG 177 (930)
Q Consensus 107 ~~~~~v~~~~~~~~iP~is~~a~~~~l~~~~~p~~~r~~p~~~~~~~ai~~~l~~-~-~w~-----~v~ii~~d--~~~g 177 (930)
.........+...++|+|......+. .+.+..+..++...+..+++++.. . |-+ +++++... ....
T Consensus 76 ~~~~~~~~~~~~~~iPvV~~~~~~~~-----~~~~~~V~~D~~~~g~~~~~~l~~~~~g~~~~~~~~i~~i~g~~~~~~~ 150 (293)
T 3l6u_A 76 VYIGSAIEEAKKAGIPVFAIDRMIRS-----DAVVSSITSNNQMIGEQLASYIKNELIKQTGRSTGRIVEITGTANVYTT 150 (293)
T ss_dssp TTTHHHHHHHHHTTCCEEEESSCCCC-----TTCSEEEEECHHHHHHHHHHHHHHHHHHHHSCSCEEEEEEECSTTCHHH
T ss_pred HHHHHHHHHHHHcCCCEEEecCCCCC-----CcceeEEecCHHHHHHHHHHHHHHHhccCCCCCCceEEEEECCCCCchH
Confidence 43335556667789999987544332 123456677888888888888776 5 666 99999843 3344
Q ss_pred cchHHHHHHHHhhc-ceEEEEEEecCCCCCCChhHHHHHHHHHHhC--CceEEEEEcChhhHHHHHHHHHHcCcccCCeE
Q 002364 178 RNGVSALNDKLAER-RCRISYKSGIPPESGVNTGYVMDLLVKVALM--ESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYV 254 (930)
Q Consensus 178 ~~~~~~l~~~l~~~-g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viil~~~~~~~~~~~~~a~~~g~~~~~~~ 254 (930)
..-.+.+.+++++. |+++.....-. .+..+....+.++.+. ++++| ++.+...+..++++++++|+. +..
T Consensus 151 ~~R~~gf~~~l~~~~g~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~ai-~~~~d~~a~g~~~al~~~g~~--di~ 223 (293)
T 3l6u_A 151 NERHRGFLKGIENEPTLSIVDSVSGN----YDPVTSERVMRQVIDSGIPFDAV-YCHNDDIAMGVLEALKKAKIS--GKI 223 (293)
T ss_dssp HHHHHHHHHHHTTCTTEEEEEEEECT----TCHHHHHHHHHHHHHTTCCCSEE-EESSHHHHHHHHHHHHHTTCC--CCE
T ss_pred HHHHHHHHHHHHhCCCcEEeeeccCC----CCHHHHHHHHHHHHHhCCCCCEE-EECCchHHHHHHHHHHhCCCC--CeE
Confidence 55678899999998 98876543222 2345555556665544 34554 445667788899999999975 344
Q ss_pred EEEe
Q 002364 255 WIAT 258 (930)
Q Consensus 255 ~i~~ 258 (930)
.++.
T Consensus 224 vig~ 227 (293)
T 3l6u_A 224 VVGI 227 (293)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 4443
No 102
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=98.04 E-value=0.00016 Score=76.91 Aligned_cols=211 Identities=8% Similarity=-0.005 Sum_probs=131.2
Q ss_pred eEEEEEEeeCC-CcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCh-hH
Q 002364 31 VVNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCS-TV 108 (930)
Q Consensus 31 ~i~IG~i~~~s-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~s-~~ 108 (930)
+++||++.|.. ..+......+++.++++. |+++ .+.++..++....+....++.++|.+||..... ..
T Consensus 2 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~--------g~~l--~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~ 71 (306)
T 2vk2_A 2 PLTVGFSQVGSESGWRAAETNVAKSEAEKR--------GITL--KIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATG 71 (306)
T ss_dssp CCEEEEEECCCCSHHHHHHHHHHHHHHHHH--------TCEE--EEEECTTCHHHHHHHHHHHHHHTCSEEEECCSSSSS
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHHHc--------CCEE--EEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhh
Confidence 47899999964 444455566776666654 4554 445666777776667777887889888754333 22
Q ss_pred HHHHHHhhccCCCcEEecccCCCCCCCCCCCceEeecCCchHHHHHHHHHHHhcC---ccEEEEEEEcC--ccccchHHH
Q 002364 109 AHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYG---WNAVSVIFVDN--EYGRNGVSA 183 (930)
Q Consensus 109 ~~~v~~~~~~~~iP~is~~a~~~~l~~~~~p~~~r~~p~~~~~~~ai~~~l~~~~---w~~v~ii~~d~--~~g~~~~~~ 183 (930)
.......+...++|+|......+.. ...+++..+..++...+..++++|...| -++++++.... .....-.+.
T Consensus 72 ~~~~~~~~~~~~iPvV~~~~~~~~~--~~~~~~~~V~~D~~~~g~~a~~~L~~~g~g~~~~I~~i~~~~~~~~~~~R~~G 149 (306)
T 2vk2_A 72 WEPVLKEAKDAEIPVFLLDRSIDVK--DKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKG 149 (306)
T ss_dssp CHHHHHHHHHTTCCEEEESSCCCCS--CGGGSSEEEECCHHHHHHHHHHHHHHHHTTSCEEEEEEECSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCEEEecCCCCCC--CccceEEEEecCHHHHHHHHHHHHHHhcCCCCCeEEEEEcCCCChhHHHHHHH
Confidence 1334445566899999875432211 1111345666777777888888877765 78999998542 234455788
Q ss_pred HHHHHhhcce-EEEEEEecCCCCCCChhHHHHHHHHHHh-----CCceEEEEEcChhhHHHHHHHHHHcCcccCC-eEEE
Q 002364 184 LNDKLAERRC-RISYKSGIPPESGVNTGYVMDLLVKVAL-----MESRVIVLHVSPSLGFQVFSVAKYLGMMGNG-YVWI 256 (930)
Q Consensus 184 l~~~l~~~g~-~v~~~~~~~~~~~~~~~~~~~~l~~l~~-----~~~~viil~~~~~~~~~~~~~a~~~g~~~~~-~~~i 256 (930)
+++++++.|. ++.... ... .+..+....++++.+ .++++|+. .+...+..+++++++.|+..++ ...+
T Consensus 150 f~~al~~~g~~~~~~~~--~~~--~~~~~~~~~~~~ll~~~~~~~~~~ai~~-~nd~~A~g~~~al~~~G~~vP~di~vi 224 (306)
T 2vk2_A 150 FAEAIKNAPNIKIIRSQ--SGD--FTRSKGKEVMESFIKAENNGKNICMVYA-HNDDMVIGAIQAIKEAGLKPGKDILTG 224 (306)
T ss_dssp HHHHTTTCTTEEEEEEE--ECT--TCHHHHHHHHHHHHHHTTTTTTCCEEEE-SSHHHHHHHHHHHHHTTCCBTTTBEEE
T ss_pred HHHHHhhCCCeEEEEec--cCC--CcHHHHHHHHHHHHHhCCCCCCeeEEEE-CCchHHHHHHHHHHHcCCCCCCCeEEE
Confidence 9999998885 333221 111 223444444555433 24676654 5566788899999999986543 3344
Q ss_pred Ee
Q 002364 257 AT 258 (930)
Q Consensus 257 ~~ 258 (930)
+.
T Consensus 225 g~ 226 (306)
T 2vk2_A 225 SI 226 (306)
T ss_dssp EE
T ss_pred ee
Confidence 43
No 103
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=98.04 E-value=2.6e-05 Score=81.56 Aligned_cols=202 Identities=9% Similarity=-0.018 Sum_probs=116.6
Q ss_pred EEEEEeeCC-CcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCChhHHHH
Q 002364 33 NVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCSTVAHI 111 (930)
Q Consensus 33 ~IG~i~~~s-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~s~~~~~ 111 (930)
+||+++|.. .++-.....+++.+.++. |+++. +.++..++....+....++.++|.++|........ .
T Consensus 1 ~Igvi~~~~~~~~~~~~~~gi~~~~~~~--------g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~-~ 69 (276)
T 2h0a_A 1 TVSVLLPFVATEFYRRLVEGIEGVLLEQ--------RYDLA--LFPILSLARLKRYLENTTLAYLTDGLILASYDLTE-R 69 (276)
T ss_dssp CEEEEECCSCCHHHHHHHHHHHHHHGGG--------TCEEE--ECCCCSCCCCC---------CCCSEEEEESCCCC---
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHHC--------CCEEE--EEeCCCchhhHHHHHHHHHhCCCCEEEEecCCCCH-H
Confidence 489999853 333334445555444432 45444 45555555444445566777788887753322222 3
Q ss_pred HHHhhccCCCcEEecccCCCCCCCCCCCceEeecCCchHHHHHHHHHHHhcCccEEEEEEEcC------cccc-chHHHH
Q 002364 112 VSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDN------EYGR-NGVSAL 184 (930)
Q Consensus 112 v~~~~~~~~iP~is~~a~~~~l~~~~~p~~~r~~p~~~~~~~ai~~~l~~~~w~~v~ii~~d~------~~g~-~~~~~l 184 (930)
....+...++|+|......+ + +..+..++...+..++++|...|-++++++..+. ...+ .-.+.+
T Consensus 70 ~~~~~~~~~iPvV~~~~~~~-------~-~~~V~~d~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~~~~~~R~~gf 141 (276)
T 2h0a_A 70 FEEGRLPTERPVVLVDAQNP-------R-YDSVYLDNRLGGRLAGAYLARFPGPIFAIAVEEEPDRAFRRTVFAERMAGF 141 (276)
T ss_dssp ----CCSCSSCEEEESSCCT-------T-SEEEEECSHHHHHHHHHHHTTSSSCEEEEEECCSCCC---CCHHHHHHHHH
T ss_pred HHHHHhhcCCCEEEEeccCC-------C-CCEEEEccHHHHHHHHHHHHHcCCCeEEEEecCcccccccchhHHHHHHHH
Confidence 34556678999998754321 1 4556677888888999998888999999998543 2445 667889
Q ss_pred HHHHhhcceEEEEEEecCCCCCCChhHHHHHHHHHHhC--CceEEEEEcChhhHHHHHHHHHHcCcccCCeEEE
Q 002364 185 NDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALM--ESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWI 256 (930)
Q Consensus 185 ~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viil~~~~~~~~~~~~~a~~~g~~~~~~~~i 256 (930)
.+++++.|+.+.....+... .+..+....+.++.+. .+++|+ +.+...+..+++++++.|+..++-+.+
T Consensus 142 ~~~l~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di~v 212 (276)
T 2h0a_A 142 QEALKEAGRPFSPDRLYITR--HSQEGGRLALRHFLEKASPPLNVF-AGADQVALGVLEEAVRLGLTPGRDVRV 212 (276)
T ss_dssp HHHHHHTTCCCCGGGEEEEC--SSHHHHHHHHHHHHTTCCSSEEEE-CSSHHHHHHHHHHHHTTSCTTTTSEEE
T ss_pred HHHHHHcCCCCChHHeeecC--CChHHHHHHHHHHHhCCCCCCEEE-ECCcHHHHHHHHHHHHcCCCCCCCeEE
Confidence 99999988754211001111 1244444556666544 366666 566677888999999999865444433
No 104
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=98.01 E-value=0.00012 Score=76.98 Aligned_cols=211 Identities=8% Similarity=-0.001 Sum_probs=131.5
Q ss_pred CCceEEEEEEeeCC-CcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCh
Q 002364 28 RPAVVNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCS 106 (930)
Q Consensus 28 ~~~~i~IG~i~~~s-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~s 106 (930)
...+.+||+++|.. .++-.....+++.+.++ .|+++.+ .++..++....+....++.++|.+||-....
T Consensus 13 ~~~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~--------~g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 82 (289)
T 2fep_A 13 SKKTTTVGVIIPDISSIFYSELARGIEDIATM--------YKYNIIL--SNSDQNMEKELHLLNTMLGKQVDGIVFMGGN 82 (289)
T ss_dssp ---CCEEEEEESCTTSHHHHHHHHHHHHHHHH--------TTCEEEE--EECTTCHHHHHHHHHHHHHTTCSEEEECCSC
T ss_pred cCCCCeEEEEeCCCCCchHHHHHHHHHHHHHH--------cCCEEEE--EeCCCCHHHHHHHHHHHHhCCCCEEEEecCC
Confidence 34567899999853 33334555666666554 2565544 5666677666666777787889888753322
Q ss_pred hHHHHHHHhhccCCCcEEecccCCCCCCCCCCCceEeecCCchHHHHHHHHHHHhcCccEEEEEEEcC---ccccchHHH
Q 002364 107 TVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDN---EYGRNGVSA 183 (930)
Q Consensus 107 ~~~~~v~~~~~~~~iP~is~~a~~~~l~~~~~p~~~r~~p~~~~~~~ai~~~l~~~~w~~v~ii~~d~---~~g~~~~~~ 183 (930)
.... ....+...++|+|......+ + +.+..+..++..-+..++++|...|.++++++.... .....-.+.
T Consensus 83 ~~~~-~~~~l~~~~iPvV~~~~~~~---~---~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~G 155 (289)
T 2fep_A 83 ITDE-HVAEFKRSPVPIVLAASVEE---Q---EETPSVAIDYEQAIYDAVKLLVDKGHTDIAFVSGPMAEPINRSKKLQG 155 (289)
T ss_dssp CCHH-HHHHHHHSSSCEEEESCCCT---T---CCSCEEECCHHHHHHHHHHHHHHTTCSSEEEEESCTTSHHHHTTHHHH
T ss_pred CCHH-HHHHHHhcCCCEEEEccccC---C---CCCCEEEECcHHHHHHHHHHHHHCCCCeEEEEeCCccccccHHHHHHH
Confidence 2222 23344568999998754322 1 223356677778888889998888999999998543 234566788
Q ss_pred HHHHHhhcceEEEEEEecCCCCCCChhHHHHHHHHHHhC--CceEEEEEcChhhHHHHHHHHHHcCcccCC-eEEEEe
Q 002364 184 LNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALM--ESRVIVLHVSPSLGFQVFSVAKYLGMMGNG-YVWIAT 258 (930)
Q Consensus 184 l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viil~~~~~~~~~~~~~a~~~g~~~~~-~~~i~~ 258 (930)
+++++++.|+.+.....+... .+..+....++++.+. .+++|+. .+...+..+++++++.|+..++ ...++.
T Consensus 156 f~~al~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~A~g~~~al~~~G~~vP~di~vvg~ 230 (289)
T 2fep_A 156 YKRALEEANLPFNEQFVAEGD--YTYDSGLEALQHLMSLDKKPTAILS-ATDEMALGIIHAAQDQGLSIPEDLDIIGF 230 (289)
T ss_dssp HHHHHHHTTCCCCGGGEEECC--SCHHHHHHHHHHHTTSSSCCSEEEE-SSHHHHHHHHHHHHHTTCCTTTTCEEEEE
T ss_pred HHHHHHHcCCCCChheEeeCC--CCHHHHHHHHHHHHcCCCCCCEEEE-CCHHHHHHHHHHHHHcCCCCCCCeEEEEE
Confidence 999999988764311011111 2244444556666543 4666654 5666788899999999986443 344443
No 105
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=98.01 E-value=0.00016 Score=75.31 Aligned_cols=207 Identities=9% Similarity=-0.004 Sum_probs=128.3
Q ss_pred eEEEEEEeeCC-CcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCChhHH
Q 002364 31 VVNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCSTVA 109 (930)
Q Consensus 31 ~i~IG~i~~~s-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~s~~~ 109 (930)
+-+||++.|.. .++-.....+++.+.++. |+++. +.++..++....+....++.++|.++|-.......
T Consensus 3 s~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~--------g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~~ 72 (275)
T 3d8u_A 3 AYSIALIIPSLFEKACAHFLPSFQQALNKA--------GYQLL--LGYSDYSIEQEEKLLSTFLESRPAGVVLFGSEHSQ 72 (275)
T ss_dssp -CEEEEEESCSSCHHHHHHHHHHHHHHHHT--------SCEEC--CEECTTCHHHHHHHHHHHHTSCCCCEEEESSCCCH
T ss_pred ceEEEEEeCCCccccHHHHHHHHHHHHHHC--------CCEEE--EEcCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCH
Confidence 35799999853 333344556666555542 45544 34556666666666677777778776642221112
Q ss_pred HHHHHhhccCCCcEEecccCCCCCCCCCCCceEeecCCchHHHHHHHHHHHhcCccEEEEEEEcC--ccccchHHHHHHH
Q 002364 110 HIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDN--EYGRNGVSALNDK 187 (930)
Q Consensus 110 ~~v~~~~~~~~iP~is~~a~~~~l~~~~~p~~~r~~p~~~~~~~ai~~~l~~~~w~~v~ii~~d~--~~g~~~~~~l~~~ 187 (930)
.....+...++|+|......+ + +.+..+..++...+..++++|...|.++++++..+. .....-.+.+.++
T Consensus 73 -~~~~~l~~~~iPvV~~~~~~~---~---~~~~~V~~d~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~ 145 (275)
T 3d8u_A 73 -RTHQLLEASNTPVLEIAELSS---K---ASYLNIGVDHFEVGKACTRHLIEQGFKNVGFIGARGNHSTLQRQLHGWQSA 145 (275)
T ss_dssp -HHHHHHHHHTCCEEEESSSCS---S---SSSEEECBCHHHHHHHHHHHHHTTTCCCEEEEECSCSSHHHHHHHHHHHHH
T ss_pred -HHHHHHHhCCCCEEEEeeccC---C---CCCCEEEEChHHHHHHHHHHHHHCCCCeEEEEcCCCCCchHHHHHHHHHHH
Confidence 334445567999998654322 1 234556677777888889998888999999998543 2345567889999
Q ss_pred HhhcceEEEEEEecCCCCCCChhHHHHHHHHHHhC--CceEEEEEcChhhHHHHHHHHHHcCcccCC-eEEEE
Q 002364 188 LAERRCRISYKSGIPPESGVNTGYVMDLLVKVALM--ESRVIVLHVSPSLGFQVFSVAKYLGMMGNG-YVWIA 257 (930)
Q Consensus 188 l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viil~~~~~~~~~~~~~a~~~g~~~~~-~~~i~ 257 (930)
+++.|+.+.....+... .+..+....+.++.+. .+++|+ +.+...+..+++++++.|+..++ ...++
T Consensus 146 l~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di~vvg 215 (275)
T 3d8u_A 146 MIENYLTPDHFLTTHEA--PSSQLGAEGLAKLLLRDSSLNALV-CSHEEIAIGALFECHRRVLKVPTDIAIIC 215 (275)
T ss_dssp HHHTTCCCCCEEECSSC--CCHHHHHHHHHHHHTTCTTCCEEE-ESSHHHHHHHHHHHHHTTCCTTTTCEEEE
T ss_pred HHHcCCCCCccEEEeCC--CChhHHHHHHHHHHhCCCCCCEEE-EcCcHHHHHHHHHHHHcCCCCCCceEEEe
Confidence 99998754322222222 2344445556665443 466665 45566788899999999986544 33444
No 106
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=97.98 E-value=0.00041 Score=73.53 Aligned_cols=215 Identities=8% Similarity=-0.009 Sum_probs=134.2
Q ss_pred eEEEEEEeeCC-CcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEc-CCChhH
Q 002364 31 VVNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIG-PQCSTV 108 (930)
Q Consensus 31 ~i~IG~i~~~s-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiG-p~~s~~ 108 (930)
+++||++.|.. .++-.....+++.+.++. |+++ .+.++ .++....+....++.++|.+||- |.....
T Consensus 2 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~--------g~~~--~~~~~-~~~~~~~~~i~~l~~~~vdgiii~~~~~~~ 70 (306)
T 8abp_A 2 NLKLGFLVKQPEEPWFQTEWKFADKAGKDL--------GFEV--IKIAV-PDGEKTLNAIDSLAASGAKGFVICTPDPKL 70 (306)
T ss_dssp CEEEEEEESCTTSHHHHHHHHHHHHHHHHH--------TEEE--EEEEC-CSHHHHHHHHHHHHHTTCCEEEEECSCGGG
T ss_pred CeEEEEEeCCCCchHHHHHHHHHHHHHHHc--------CCEE--EEeCC-CCHHHHHHHHHHHHHcCCCEEEEeCCCchh
Confidence 68999999864 444455667777777665 4444 45566 47777777788888888888764 555555
Q ss_pred HHHHHHhhccCCCcEEecccCCCCCCCCCCCceEeecCCchHHHHHHHHHHH-hcCcc-----EEEEEE-EcC--ccccc
Q 002364 109 AHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVS-YYGWN-----AVSVIF-VDN--EYGRN 179 (930)
Q Consensus 109 ~~~v~~~~~~~~iP~is~~a~~~~l~~~~~p~~~r~~p~~~~~~~ai~~~l~-~~~w~-----~v~ii~-~d~--~~g~~ 179 (930)
.......+.+.++|+|......+.......+.+..+..++...+...+++|. ..+-+ +++++. ... ...+.
T Consensus 71 ~~~~~~~~~~~~iPvV~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~l~~~~g~~~~~~~~i~~~~~~~~~~~~~~~ 150 (306)
T 8abp_A 71 GSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMLAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARR 150 (306)
T ss_dssp HHHHHHHHHHTTCEEEEESSCCBCTTSCBCTTSCEEEECHHHHHHHHHHHHHHHHHHHTCCGGGEEEEEEECTTSHHHHH
T ss_pred hHHHHHHHHHCCCcEEEeCCCCCCccccccccccEEecChhHHHHHHHHHHHHHHHhcCCCccceEEEEecCCCChHHHH
Confidence 5555667778899999876432222111112344555677777777777654 33433 888886 332 23445
Q ss_pred hHHHHHHHHhhcce---EEEEEEecCCCCCCChhHHHHHHHHHHhCC--ceE-EEEEcChhhHHHHHHHHHHcCcccCCe
Q 002364 180 GVSALNDKLAERRC---RISYKSGIPPESGVNTGYVMDLLVKVALME--SRV-IVLHVSPSLGFQVFSVAKYLGMMGNGY 253 (930)
Q Consensus 180 ~~~~l~~~l~~~g~---~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~--~~v-iil~~~~~~~~~~~~~a~~~g~~~~~~ 253 (930)
-.+.+.+++++.|. ++..... .. .+.......+.++.+.. ++. +|++.+...+..++++++++|+...+.
T Consensus 151 R~~Gf~~~l~~~g~~~~~~~~~~~--~~--~~~~~~~~~~~~~l~~~~~~~a~~i~~~nD~~A~g~~~al~~~g~~v~di 226 (306)
T 8abp_A 151 RTTGSMDALKAAGFPEKQIYQVPT--KS--NDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADI 226 (306)
T ss_dssp HHHHHHHHHHHHTCCGGGEEEEEC--SS--SSHHHHHHHHHHHHTTCTTCSEEEEECSSHHHHHHHHHHHHHTTCCGGGE
T ss_pred HHHHHHHHHHhcCCCCcEEEeecc--CC--CChHHHHHHHHHHHHhCCCCceEEEEeCCcHHHHHHHHHHHHcCCCCCce
Confidence 57888999998764 2332222 11 23455556666665544 455 456667778888999999999854334
Q ss_pred EEEEeCc
Q 002364 254 VWIATDW 260 (930)
Q Consensus 254 ~~i~~~~ 260 (930)
..++.|.
T Consensus 227 ~vvG~D~ 233 (306)
T 8abp_A 227 IGIGING 233 (306)
T ss_dssp EEEEESS
T ss_pred EEEEeCc
Confidence 4455443
No 107
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=97.97 E-value=0.00013 Score=78.91 Aligned_cols=211 Identities=8% Similarity=-0.017 Sum_probs=136.4
Q ss_pred ceEEEEEEeeC---CCcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCh
Q 002364 30 AVVNVGALFTL---DSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCS 106 (930)
Q Consensus 30 ~~i~IG~i~~~---s~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~s 106 (930)
.+-+||+++|. +.++-.....+++.+.++. |+++ .+.++..++....+....++.++|.+||-....
T Consensus 60 ~~~~Igvi~~~~~~~~~~~~~~~~gi~~~a~~~--------g~~~--~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 129 (338)
T 3dbi_A 60 STQTLGLVVTNTLYHGIYFSELLFHAARMAEEK--------GRQL--LLADGKHSAEEERQAIQYLLDLRCDAIMIYPRF 129 (338)
T ss_dssp CCSEEEEEECTTTTSTTHHHHHHHHHHHHHHHT--------TCEE--EEEECTTSHHHHHHHHHHHHHTTCSEEEECCSS
T ss_pred CCCEEEEEecCCcccChhHHHHHHHHHHHHHHC--------CCEE--EEEeCCCChHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 45789999996 2333344555655555542 4554 456677777777767777888889888754333
Q ss_pred hHHHHHHHhhccCCCcEEecccCCCCCCCCCCCceEeecCCchHHHHHHHHHHHhcCccEEEEEEEc--CccccchHHHH
Q 002364 107 TVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVD--NEYGRNGVSAL 184 (930)
Q Consensus 107 ~~~~~v~~~~~~~~iP~is~~a~~~~l~~~~~p~~~r~~p~~~~~~~ai~~~l~~~~w~~v~ii~~d--~~~g~~~~~~l 184 (930)
.....+...+...++|+|......+. +.+.....++..-+..++++|...|.++++++... ......-.+.+
T Consensus 130 ~~~~~~~~~~~~~~iPvV~~~~~~~~------~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf 203 (338)
T 3dbi_A 130 LSVDEIDDIIDAHSQPIMVLNRRLRK------NSSHSVWCDHKQTSFNAVAELINAGHQEIAFLTGSMDSPTSIERLAGY 203 (338)
T ss_dssp SCHHHHHHHHHHCSSCEEEESSCCSS------SGGGEECBCHHHHHHHHHHHHHHTTCCSEEEECCCTTCHHHHHHHHHH
T ss_pred CChHHHHHHHHcCCCCEEEEcCCCCC------CCCCEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCCCCccHHHHHHHH
Confidence 33455677888899999976543321 12234667777788888999988899999999753 23344557889
Q ss_pred HHHHhhcceEEEEEEecCCCCCCChhHHHHHHHHHHh--CCceEEEEEcChhhHHHHHHHHHHcCcccCC-eEEEEeC
Q 002364 185 NDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVAL--MESRVIVLHVSPSLGFQVFSVAKYLGMMGNG-YVWIATD 259 (930)
Q Consensus 185 ~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~viil~~~~~~~~~~~~~a~~~g~~~~~-~~~i~~~ 259 (930)
.+++++.|+.+.....+... .+..+-...+.++.+ .++++|+ +.+...+..+++++++.|+..++ ...++-|
T Consensus 204 ~~al~~~g~~~~~~~~~~~~--~~~~~~~~~~~~ll~~~~~~~ai~-~~nd~~A~g~~~al~~~G~~vP~di~vvg~D 278 (338)
T 3dbi_A 204 KDALAQHGIALNEKLIANGK--WTPASGAEGVEMLLERGAKFSALV-ASNDDMAIGAMKALHERGVAVPEQVSVIGFD 278 (338)
T ss_dssp HHHHHHTTCCCCGGGEECCC--SSHHHHHHHHHHHHHTTCCCSEEE-ESSHHHHHHHHHHHHHTTCCTTTTCEEEEES
T ss_pred HHHHHHCCCCCCcceEEeCC--CCHHHHHHHHHHHHcCCCCCeEEE-ECChHHHHHHHHHHHHcCCCCCCCeEEEEEC
Confidence 99999998765321111212 234444455555543 3466665 45667788899999999986544 3444443
No 108
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=97.97 E-value=0.0003 Score=73.11 Aligned_cols=207 Identities=12% Similarity=0.031 Sum_probs=133.8
Q ss_pred EEEEEEeeCC-CcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCChhHHH
Q 002364 32 VNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCSTVAH 110 (930)
Q Consensus 32 i~IG~i~~~s-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~s~~~~ 110 (930)
-+||+++|.. .++-.....+++-+.++. |+++.+ .++..++.........++.+++.++|-........
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~ 72 (272)
T 3o74_A 3 RTLGFILPDLENPSYARIAKQLEQGARAR--------GYQLLI--ASSDDQPDSERQLQQLFRARRCDALFVASCLPPED 72 (272)
T ss_dssp CEEEEEESCTTCHHHHHHHHHHHHHHHHT--------TCEEEE--EECTTCHHHHHHHHHHHHHTTCSEEEECCCCCSSC
T ss_pred eEEEEEeCCCcChhHHHHHHHHHHHHHHC--------CCEEEE--EeCCCCHHHHHHHHHHHHHcCCCEEEEecCccccH
Confidence 4799999864 333345556666555552 565544 55666777777777778888888877533221123
Q ss_pred HHHHhhccCCCcEEecccCCCCCCCCCCCceEeecCCchHHHHHHHHHHHhcCccEEEEEEEcCc--cccchHHHHHHHH
Q 002364 111 IVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNE--YGRNGVSALNDKL 188 (930)
Q Consensus 111 ~v~~~~~~~~iP~is~~a~~~~l~~~~~p~~~r~~p~~~~~~~ai~~~l~~~~w~~v~ii~~d~~--~g~~~~~~l~~~l 188 (930)
.....+.+.++|+|......+. +.+-....++...+..++++|...|-++++++..+.. ..+.-.+.+.+++
T Consensus 73 ~~~~~~~~~~iPvV~~~~~~~~------~~~~~V~~d~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l 146 (272)
T 3o74_A 73 DSYRELQDKGLPVIAIDRRLDP------AHFCSVISDDRDASRQLAASLLSSAPRSIALIGARPELSVSQARAGGFDEAL 146 (272)
T ss_dssp CHHHHHHHTTCCEEEESSCCCT------TTCEEEEECHHHHHHHHHHHHHTTCCSEEEEEEECTTSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCEEEEccCCCc------cccCEEEEchHHHHHHHHHHHHHCCCcEEEEEecCCCCccHHHHHHHHHHHH
Confidence 4455666789999986543321 1234466777888888999999899999999986433 4455678999999
Q ss_pred hhcceEEEEEEecCCCCCCChhHHHHHHHHHHh-C--CceEEEEEcChhhHHHHHHHHHHcCcccCCeEEEEeC
Q 002364 189 AERRCRISYKSGIPPESGVNTGYVMDLLVKVAL-M--ESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATD 259 (930)
Q Consensus 189 ~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~-~--~~~viil~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~ 259 (930)
++.|+++.....-. .+..+....+.++.+ . .+++|+. .+...+..++++++++|+.+.+...++.|
T Consensus 147 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~ai~~-~~d~~a~g~~~al~~~g~vp~di~vvg~d 215 (272)
T 3o74_A 147 QGYTGEVRRYQGEA----FSRECGQRLMQQLIDDLGGLPDALVT-TSYVLLQGVFDTLQARPVDSRQLQLGTFG 215 (272)
T ss_dssp TTCCSEEEEEEESS----SSHHHHHHHHHHHHHHHTSCCSEEEE-SSHHHHHHHHHHHHTSCGGGCCCEEEEES
T ss_pred HHcCCChheeecCC----CCHHHHHHHHHHHHhcCCCCCcEEEE-eCchHHHHHHHHHHHcCCCccceEEEEeC
Confidence 99998765433222 224444455555433 2 4677654 56677888999999999833334455544
No 109
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=97.96 E-value=9.1e-05 Score=78.03 Aligned_cols=209 Identities=7% Similarity=-0.065 Sum_probs=127.5
Q ss_pred ceEEEEEEeeCC-CcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCChHHHHH---HHHHHHhcCcEEEEcCCC
Q 002364 30 AVVNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMV---EALRFMETDIVAIIGPQC 105 (930)
Q Consensus 30 ~~i~IG~i~~~s-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~l~~~D~~~~~~~a~~---~a~~li~~~v~aiiGp~~ 105 (930)
.+.+||++.|.. .++......+++.+.++. |+++. +.++..++..... ....++.++|.+||-...
T Consensus 7 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 76 (290)
T 2rgy_A 7 QLGIIGLFVPTFFGSYYGTILKQTDLELRAV--------HRHVV--VATGCGESTPREQALEAVRFLIGRDCDGVVVISH 76 (290)
T ss_dssp -CCEEEEECSCSCSHHHHHHHHHHHHHHHHT--------TCEEE--EECCCSSSCHHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred CCCeEEEEeCCCCCchHHHHHHHHHHHHHHC--------CCEEE--EEeCCCchhhhhhHHHHHHHHHhcCccEEEEecC
Confidence 457899999853 334445556666665542 56554 4555555555444 566677778888875333
Q ss_pred hhHHHHHHHhhccCCCcEEecccCCCCCCCCCCCceEeecCCchHHHHHHHHHHHhcCccEEEEEEEcC--ccccchHHH
Q 002364 106 STVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDN--EYGRNGVSA 183 (930)
Q Consensus 106 s~~~~~v~~~~~~~~iP~is~~a~~~~l~~~~~p~~~r~~p~~~~~~~ai~~~l~~~~w~~v~ii~~d~--~~g~~~~~~ 183 (930)
.... .....+...++|+|......+. +.+..+..++...+..++++|...|-++++++..+. .....-.+.
T Consensus 77 ~~~~-~~~~~l~~~~iPvV~~~~~~~~------~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~G 149 (290)
T 2rgy_A 77 DLHD-EDLDELHRMHPKMVFLNRAFDA------LPDASFCPDHRRGGELAAATLIEHGHRKLAVISGPFTASDNVERLDG 149 (290)
T ss_dssp SSCH-HHHHHHHHHCSSEEEESSCCTT------SGGGEECCCHHHHHHHHHHHHHHTTCCSEEEEESCTTCHHHHHHHHH
T ss_pred CCCH-HHHHHHhhcCCCEEEEccccCC------CCCCEEEeCcHHHHHHHHHHHHHCCCceEEEEeCCCCCccHHHHHHH
Confidence 2222 2334445579999987543221 223456677777788888988888999999998543 234555778
Q ss_pred HHHHHhhcceEEEEEEecCCCCCCChhHHHHHHHHHHh--CCceEEEEEcChhhHHHHHHHHHHcCcccCC-eEEEEe
Q 002364 184 LNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVAL--MESRVIVLHVSPSLGFQVFSVAKYLGMMGNG-YVWIAT 258 (930)
Q Consensus 184 l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~viil~~~~~~~~~~~~~a~~~g~~~~~-~~~i~~ 258 (930)
+++++++.|+.+.....+... .+..+....+.++.+ ..+++|+ +.+...+..+++++++.|+..++ ...++.
T Consensus 150 f~~al~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~A~g~~~al~~~G~~vP~di~vvg~ 224 (290)
T 2rgy_A 150 FFDELARHGIARDSVPLIESD--FSPEGGYAATCQLLESKAPFTGLF-CANDTMAVSALARFQQLGISVPGDVSVIGY 224 (290)
T ss_dssp HHHHHHTTTCCGGGSCEEECC--SSHHHHHHHHHHHHHHTCCCSEEE-ESSHHHHHHHHHHHHHTTCCTTTTCEEEEE
T ss_pred HHHHHHHcCCCCCcccEEecC--CChhHHHHHHHHHHhCCCCCcEEE-ECCcHHHHHHHHHHHHcCCCCCCceEEEEe
Confidence 899999988653211011111 223333444555433 3577766 45667788899999999986543 334443
No 110
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=97.95 E-value=0.00015 Score=78.02 Aligned_cols=208 Identities=10% Similarity=0.008 Sum_probs=130.0
Q ss_pred ceEEEEEEeeCC-CcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCChhH
Q 002364 30 AVVNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCSTV 108 (930)
Q Consensus 30 ~~i~IG~i~~~s-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~s~~ 108 (930)
.+.+||++.|.. .++......+++.++++ .|+++.+ .++..++.........++.++|.++|.......
T Consensus 62 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~--------~g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~ 131 (332)
T 2o20_A 62 RTTTVGVILPTITSTYFAAITRGVDDIASM--------YKYNMIL--ANSDNDVEKEEKVLETFLSKQVDGIVYMGSSLD 131 (332)
T ss_dssp CCCEEEEEESCTTCHHHHHHHHHHHHHHHH--------TTCEEEE--EECTTCHHHHHHHHHHHHHTTCSEEEECSSCCC
T ss_pred CCCEEEEEeCCCCCcHHHHHHHHHHHHHHH--------cCCEEEE--EECCCChHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence 457899999853 44444556666666554 2565544 466667666666667777778988875332222
Q ss_pred HHHHHHhhccCCCcEEecccCCCCCCCCCCCceEeecCCchHHHHHHHHHHHhcCccEEEEEEEcC--ccccchHHHHHH
Q 002364 109 AHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDN--EYGRNGVSALND 186 (930)
Q Consensus 109 ~~~v~~~~~~~~iP~is~~a~~~~l~~~~~p~~~r~~p~~~~~~~ai~~~l~~~~w~~v~ii~~d~--~~g~~~~~~l~~ 186 (930)
... ...+...++|+|......+ + +.+.....++..-+..++++|...|.++++++..+. .....-.+.+.+
T Consensus 132 ~~~-~~~l~~~~iPvV~~~~~~~---~---~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~ 204 (332)
T 2o20_A 132 EKI-RTSLKNSRTPVVLVGTIDG---D---KEIPSVNIDYHLAAYQSTKKLIDSGNKKIAYIMGSLKDVENTERMVGYQE 204 (332)
T ss_dssp HHH-HHHHHHHCCCEEEESCCCT---T---SCSCEEECCHHHHHHHHHHHHHHTTCSSEEEECSCTTSHHHHHHHHHHHH
T ss_pred HHH-HHHHHhCCCCEEEEccccC---C---CCCCEEEeChHHHHHHHHHHHHHCCCCeEEEEeCCcccccHHHHHHHHHH
Confidence 222 3334467999998754322 1 223345677777788888988888999999998543 234556788999
Q ss_pred HHhhcceEEEEEEecCCCCCCChhHHHHHHHHHHhCCceEEEEEcChhhHHHHHHHHHHcCcccCCe-EEEE
Q 002364 187 KLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGNGY-VWIA 257 (930)
Q Consensus 187 ~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~~~~~a~~~g~~~~~~-~~i~ 257 (930)
++++.|+.+.....+... .+..+-...+.++.+..+++|+. .+...+..+++++++.|+..++- ..++
T Consensus 205 al~~~g~~~~~~~~~~~~--~~~~~~~~~~~~ll~~~~~ai~~-~~d~~A~g~~~al~~~G~~vP~disvig 273 (332)
T 2o20_A 205 ALLEANIEFDENLVFEGN--YSYEQGKALAERLLERGATSAVV-SHDTVAVGLLSAMMDKGVKVPEDFEIIS 273 (332)
T ss_dssp HHHHTTCCCCGGGEECSC--CSHHHHHHHHHHHHHTTCCEEEE-SCHHHHHHHHHHHHHTTCCTTTTCEEEE
T ss_pred HHHHcCCCCChhhEEeCC--CCHHHHHHHHHHHhccCCCEEEE-CChHHHHHHHHHHHHcCCCCccCEEEEE
Confidence 999998764321111211 22333334455543337888775 56677888999999999865443 3444
No 111
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=97.95 E-value=5.3e-05 Score=79.89 Aligned_cols=204 Identities=12% Similarity=0.055 Sum_probs=116.9
Q ss_pred CceEEEEEEeeCC-CcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCChh
Q 002364 29 PAVVNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCST 107 (930)
Q Consensus 29 ~~~i~IG~i~~~s-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~s~ 107 (930)
..+.+||++.|.. .++......+++.+.++ .|+++.+. .++..++....+....++.++|.++|......
T Consensus 6 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~--------~g~~~~~~-~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~ 76 (290)
T 3clk_A 6 KSSNVIAAVVSSVRTNFAQQILDGIQEEAHK--------NGYNLIIV-YSGSADPEEQKHALLTAIERPVMGILLLSIAL 76 (290)
T ss_dssp --CCEEEEECCCCSSSHHHHHHHHHHHHHHT--------TTCEEEEE-C----------CHHHHHHSSCCSEEEEESCC-
T ss_pred ccCCEEEEEeCCCCChHHHHHHHHHHHHHHH--------cCCeEEEE-eCCCCCHHHHHHHHHHHHhcCCCEEEEecccC
Confidence 3457899999853 44434455555555443 25555443 15555555555556667777888887533222
Q ss_pred HHHHHHHhhccCCCcEEecccCCCCCCCCCCCceEeecCCchHHHHHHHHHHHhcCccEEEEEEEc--CccccchHHHHH
Q 002364 108 VAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVD--NEYGRNGVSALN 185 (930)
Q Consensus 108 ~~~~v~~~~~~~~iP~is~~a~~~~l~~~~~p~~~r~~p~~~~~~~ai~~~l~~~~w~~v~ii~~d--~~~g~~~~~~l~ 185 (930)
.. .....+...++|+|......+. + +..+..++...+..++++|...|-++++++..+ ......-.+.++
T Consensus 77 ~~-~~~~~l~~~~iPvV~~~~~~~~------~-~~~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~ 148 (290)
T 3clk_A 77 TD-DNLQLLQSSDVPYCFLSMGFDD------D-RPFISSDDEDIGYQATNLLINEGHRQIGIAGIDQYPYTGRKRLAGYK 148 (290)
T ss_dssp ----CHHHHHCC--CEEEESCC--C------C-SCEEECCHHHHHHHHHHHHHTTTCCSEEEESCCCCTTTHHHHHHHHH
T ss_pred CH-HHHHHHHhCCCCEEEEcCCCCC------C-CCEEEeChHHHHHHHHHHHHHcCCCEEEEEeCCCCCcchHHHHHHHH
Confidence 22 3334456689999987543221 2 345667778888889999888899999999754 334556678899
Q ss_pred HHHhhcceEEEEEEecCCCCCCChhHHHHHHHHHHh-CCceEEEEEcChhhHHHHHHHHHHcCcccCC
Q 002364 186 DKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVAL-MESRVIVLHVSPSLGFQVFSVAKYLGMMGNG 252 (930)
Q Consensus 186 ~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~-~~~~viil~~~~~~~~~~~~~a~~~g~~~~~ 252 (930)
+++++.|+.+.....+... .+..+....+.++.+ .++++|+. .+...+..+++++++.|+..++
T Consensus 149 ~~l~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~ai~~-~~d~~a~g~~~al~~~g~~vP~ 213 (290)
T 3clk_A 149 KALKEANIAINQEWIKPGD--YSYTSGEQAMKAFGKNTDLTGIIA-ASDMTAIGILNQASSFGIEVPK 213 (290)
T ss_dssp HHHHHTTCCCCGGGEECCC--SSHHHHHHHHHHHCTTCCCSEEEE-SSHHHHHHHHHHHHHTTCCTTT
T ss_pred HHHHHcCCCCCcceEEcCC--CChhhHHHHHHHHhccCCCcEEEE-CCcHHHHHHHHHHHHcCCCCCC
Confidence 9999998764311011111 223444455555543 45676654 5566788899999999986443
No 112
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=97.94 E-value=0.0001 Score=79.39 Aligned_cols=210 Identities=10% Similarity=-0.006 Sum_probs=130.7
Q ss_pred CceEEEEEEeeC-CCcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCChh
Q 002364 29 PAVVNVGALFTL-DSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCST 107 (930)
Q Consensus 29 ~~~i~IG~i~~~-s~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~s~ 107 (930)
..+.+||++.|. +.++......+++.+.++. |+++.+ .++..++.........++.++|.++|......
T Consensus 58 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~ 127 (332)
T 2hsg_A 58 KKTTTVGVIIPDISNIFYAELARGIEDIATMY--------KYNIIL--SNSDQNQDKELHLLNNMLGKQVDGIIFMSGNV 127 (332)
T ss_dssp C-CCEEEEEEC--CCSHHHHHHHHHHHHHHHH--------TCEEEE--EECCSHHHHHHHHHHHTSCCSSCCEEECCSSC
T ss_pred CCCCEEEEEeCCCCCcHHHHHHHHHHHHHHHc--------CCEEEE--EeCCCChHHHHHHHHHHHhCCCcEEEEecCCC
Confidence 346789999985 3444456667777776653 565544 45555665555556666667888887533222
Q ss_pred HHHHHHHhhccCCCcEEecccCCCCCCCCCCCceEeecCCchHHHHHHHHHHHhcCccEEEEEEEcC---ccccchHHHH
Q 002364 108 VAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDN---EYGRNGVSAL 184 (930)
Q Consensus 108 ~~~~v~~~~~~~~iP~is~~a~~~~l~~~~~p~~~r~~p~~~~~~~ai~~~l~~~~w~~v~ii~~d~---~~g~~~~~~l 184 (930)
.. .....+...++|+|......+ + +.+..+..++..-+..++++|...|.++++++..+. .....-.+.+
T Consensus 128 ~~-~~~~~l~~~~iPvV~~~~~~~---~---~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~Gf 200 (332)
T 2hsg_A 128 TE-EHVEELKKSPVPVVLAASIES---T---NQIPSVTIDYEQAAFDAVQSLIDSGHKNIAFVSGTLEEPINHAKKVKGY 200 (332)
T ss_dssp CH-HHHHHHTTSSSCEEEESCCCS---C---TTSCEEEECHHHHHHHHHHHHHTTTCSCEEEEESCTTSHHHHTTHHHHH
T ss_pred CH-HHHHHHHhCCCCEEEEccccC---C---CCCCEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCcccCccHHHHHHHH
Confidence 22 334445668999998754322 1 223345567777788888988888999999998543 2345667889
Q ss_pred HHHHhhcceEEEEEEecCCCCCCChhHHHHHHHHHHhC--CceEEEEEcChhhHHHHHHHHHHcCcccCC-eEEEEe
Q 002364 185 NDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALM--ESRVIVLHVSPSLGFQVFSVAKYLGMMGNG-YVWIAT 258 (930)
Q Consensus 185 ~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viil~~~~~~~~~~~~~a~~~g~~~~~-~~~i~~ 258 (930)
.+++++.|+.+.....+... .+..+-...+.++.+. .+++|+ +.+...+..+++++++.|+..++ ...++.
T Consensus 201 ~~al~~~g~~~~~~~~~~~~--~~~~~~~~~~~~ll~~~~~~~ai~-~~nd~~A~g~~~al~~~G~~vP~disvvg~ 274 (332)
T 2hsg_A 201 KRALTESGLPVRDSYIVEGD--YTYDSGIEAVEKLLEEDEKPTAIF-VGTDEMALGVIHGAQDRGLNVPNDLEIIGF 274 (332)
T ss_dssp HHHHHTTTCCCCGGGEEECC--SSHHHHHHHHHHHHHSSSCCSEEE-ESSHHHHHHHHHHHHHTTCCHHHHCEEEEE
T ss_pred HHHHHHcCCCCChheEEeCC--CCHHHHHHHHHHHHcCCCCCeEEE-ECChHHHHHHHHHHHHcCCCCCCCeEEEEE
Confidence 99999998754311011111 2234444555665443 467766 45667788899999999986443 334443
No 113
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*
Probab=97.94 E-value=0.00034 Score=75.55 Aligned_cols=208 Identities=7% Similarity=-0.022 Sum_probs=128.8
Q ss_pred CCceEEEEEEeeC--CCcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCC--CChHHHHHHHHHHHhcCcEEEEcC
Q 002364 28 RPAVVNVGALFTL--DSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSN--CSGFIGMVEALRFMETDIVAIIGP 103 (930)
Q Consensus 28 ~~~~i~IG~i~~~--s~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~l~~~D~~--~~~~~a~~~a~~li~~~v~aiiGp 103 (930)
...+.+||++.|. +.++-.....+++.+.++. |+++.+...++. .++.........++.++|.+||-+
T Consensus 40 ~~~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~ 111 (342)
T 1jx6_A 40 TQRPIKISVVYPGQQVSDYWVRNIASFEKRLYKL--------NINYQLNQVFTRPNADIKQQSLSLMEALKSKSDYLIFT 111 (342)
T ss_dssp CSSCEEEEEEECCCSSCCHHHHHHHHHHHHHHHT--------TCCEEEEEEECCTTCCHHHHHHHHHHHHHTTCSEEEEC
T ss_pred cCCceEEEEEecCCcccHHHHHHHHHHHHHHHHc--------CCeEEEEecCCCCccCHHHHHHHHHHHHhcCCCEEEEe
Confidence 4557899999986 3444345556666555542 566666655555 577666667777888889988876
Q ss_pred CChhHHHHHHHhhccCCCcEEecccC-CCCCCCCCCCceEeecCCchHHHHHHHHHHHhc-C-ccEEEEEEEcCc-cccc
Q 002364 104 QCSTVAHIVSYVSNELQVPLLSFGVT-DPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYY-G-WNAVSVIFVDNE-YGRN 179 (930)
Q Consensus 104 ~~s~~~~~v~~~~~~~~iP~is~~a~-~~~l~~~~~p~~~r~~p~~~~~~~ai~~~l~~~-~-w~~v~ii~~d~~-~g~~ 179 (930)
............+...++|+|..... .|.......+.+..+.+++...+..++++|... | -++++++..... ....
T Consensus 112 ~~~~~~~~~~~~~~~~~ip~V~~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~~Gg~~~I~~i~~~~~~~~~~ 191 (342)
T 1jx6_A 112 LDTTRHRKFVEHVLDSTNTKLILQNITTPVREWDKHQPFLYVGFDHAEGSRELATEFGKFFPKHTYYSVLYFSEGYISDV 191 (342)
T ss_dssp CSSSTTHHHHHHHHHHCSCEEEEETCCSCBGGGTTSCCSEEEECCHHHHHHHHHHHHHHHSCTTCEEEEECCSTTHHHHH
T ss_pred CChHhHHHHHHHHHHcCCCEEEEecCCCcccccccCCCceEEecCcHHHHHHHHHHHHHHcCCCceEEEEEcCCcchhhH
Confidence 54433233344455678999876222 221100112334556677788888888987764 7 999999975432 3344
Q ss_pred hHHHHHHHHhhcce-EEEEEEecCCCCCCChhHHHHHHHHHHhC--CceEEEEEcChhhHHHHHHHHHHcCc
Q 002364 180 GVSALNDKLAERRC-RISYKSGIPPESGVNTGYVMDLLVKVALM--ESRVIVLHVSPSLGFQVFSVAKYLGM 248 (930)
Q Consensus 180 ~~~~l~~~l~~~g~-~v~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viil~~~~~~~~~~~~~a~~~g~ 248 (930)
-.+.+.+++++.|. ..... +... .+..+....+.++.+. ++++|+ +.+...+..+++++++.|+
T Consensus 192 R~~Gf~~~l~~~~~~~~~~~--~~~~--~~~~~~~~~~~~~l~~~~~~~ai~-~~nd~~A~g~~~al~~~g~ 258 (342)
T 1jx6_A 192 RGDTFIHQVNRDNNFELQSA--YYTK--ATKQSGYDAAKASLAKHPDVDFIY-ACSTDVALGAVDALAELGR 258 (342)
T ss_dssp HHHHHHHHHHHHHCCEEEEE--ECCC--SSHHHHHHHHHHHHHHCCCCSEEE-ESSHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhCCCcEEEEE--ecCC--CCHHHHHHHHHHHHHhCCCccEEE-ECCChhHHHHHHHHHHcCC
Confidence 56788889988886 33222 2222 2344444455555432 466655 4556678889999999997
No 114
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=97.92 E-value=0.00016 Score=76.22 Aligned_cols=211 Identities=12% Similarity=0.048 Sum_probs=132.5
Q ss_pred CceEEEEEEeeC------CCcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEc
Q 002364 29 PAVVNVGALFTL------DSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIG 102 (930)
Q Consensus 29 ~~~i~IG~i~~~------s~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiG 102 (930)
..+-+||+++|. +.++-.....+++-+.++. |+++ .+.++..++.........+..+++.+||-
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~--------g~~~--~~~~~~~~~~~~~~~~~~~~~~~vdgiIi 75 (292)
T 3k4h_A 6 QTTKTLGLVMPSSASKAFQNPFFPEVIRGISSFAHVE--------GYAL--YMSTGETEEEIFNGVVKMVQGRQIGGIIL 75 (292)
T ss_dssp -CCCEEEEECSSCHHHHTTSTHHHHHHHHHHHHHHHT--------TCEE--EECCCCSHHHHHHHHHHHHHTTCCCEEEE
T ss_pred CCCCEEEEEecCCccccccCHHHHHHHHHHHHHHHHc--------CCEE--EEEeCCCCHHHHHHHHHHHHcCCCCEEEE
Confidence 346789999997 2333345556666555542 4544 44666665555555555666678888874
Q ss_pred CCChhHHHHHHHhhccCCCcEEecccCCCCCCCCCCCceEeecCCchHHHHHHHHHHHhcCccEEEEEEEcCc--cccch
Q 002364 103 PQCSTVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNE--YGRNG 180 (930)
Q Consensus 103 p~~s~~~~~v~~~~~~~~iP~is~~a~~~~l~~~~~p~~~r~~p~~~~~~~ai~~~l~~~~w~~v~ii~~d~~--~g~~~ 180 (930)
...... ......+...++|+|......+.. +.+..+..++...+..++++|...|-++++++..+.. ....-
T Consensus 76 ~~~~~~-~~~~~~l~~~~iPvV~~~~~~~~~-----~~~~~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R 149 (292)
T 3k4h_A 76 LYSREN-DRIIQYLHEQNFPFVLIGKPYDRK-----DEITYVDNDNYTAAREVAEYLISLGHKQIAFIGGGSDLLVTRDR 149 (292)
T ss_dssp SCCBTT-CHHHHHHHHTTCCEEEESCCSSCT-----TTSCEEECCHHHHHHHHHHHHHHTTCCCEEEEESCTTBHHHHHH
T ss_pred eCCCCC-hHHHHHHHHCCCCEEEECCCCCCC-----CCCCEEEECcHHHHHHHHHHHHHCCCceEEEEeCcccchhHHHH
Confidence 322222 245566677899999865433211 1244566777888889999988889999999985433 34455
Q ss_pred HHHHHHHHhhcceEEEEEEecCCCCCCChhHHHHHHHHHHhC--CceEEEEEcChhhHHHHHHHHHHcCcccCC-eEEEE
Q 002364 181 VSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALM--ESRVIVLHVSPSLGFQVFSVAKYLGMMGNG-YVWIA 257 (930)
Q Consensus 181 ~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viil~~~~~~~~~~~~~a~~~g~~~~~-~~~i~ 257 (930)
.+.+.+++++.|+.+.....+... .+.......+.++.+. ++++|+ +.+...+..++++++++|+..++ ...++
T Consensus 150 ~~gf~~~l~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di~vig 226 (292)
T 3k4h_A 150 LAGMSDALKLADIVLPKEYILHFD--FSRESGQQAVEELMGLQQPPTAIM-ATDDLIGLGVLSALSKKGFVVPKDVSIVS 226 (292)
T ss_dssp HHHHHHHHHHTTCCCCGGGEEECC--SSHHHHHHHHHHHHTSSSCCSEEE-ESSHHHHHHHHHHHHHTTCCTTTTCEEEE
T ss_pred HHHHHHHHHHcCCCCChheEEecC--CCHHHHHHHHHHHHcCCCCCcEEE-EcChHHHHHHHHHHHHhCCCCCCeEEEEE
Confidence 788999999998764321111111 2345555566666554 456655 55667788899999999986543 33444
Q ss_pred e
Q 002364 258 T 258 (930)
Q Consensus 258 ~ 258 (930)
.
T Consensus 227 ~ 227 (292)
T 3k4h_A 227 F 227 (292)
T ss_dssp E
T ss_pred e
Confidence 3
No 115
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=97.89 E-value=0.00011 Score=77.20 Aligned_cols=209 Identities=9% Similarity=0.015 Sum_probs=128.9
Q ss_pred eEEEEEEeeC-----CCcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCC
Q 002364 31 VVNVGALFTL-----DSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQC 105 (930)
Q Consensus 31 ~i~IG~i~~~-----s~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~ 105 (930)
+-+||++.|. +.++-.....+++.+.++. |+++. +.++..++....+....++.++|.+||....
T Consensus 4 s~~Ig~i~~~~~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 73 (287)
T 3bbl_A 4 SFMIGYSWTQTEPGQVNHILDQFLSSMVREAGAV--------NYFVL--PFPFSEDRSQIDIYRDLIRSGNVDGFVLSSI 73 (287)
T ss_dssp CCEEEECCCCCCTTCSCCTHHHHHHHHHHHHHHT--------TCEEE--ECCCCSSTTCCHHHHHHHHTTCCSEEEECSC
T ss_pred eeEEEEEecccccccCChhHHHHHHHHHHHHHHc--------CCEEE--EEeCCCchHHHHHHHHHHHcCCCCEEEEeec
Confidence 4579999986 4444455667777666652 55554 4555555544445556677778888875332
Q ss_pred hhHHHHHHHhhccCCCcEEecccCCCCCCCCCCCceEeecCCchHHHHHHHHHHHhcCccEEEEEEEcC--ccccchHHH
Q 002364 106 STVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDN--EYGRNGVSA 183 (930)
Q Consensus 106 s~~~~~v~~~~~~~~iP~is~~a~~~~l~~~~~p~~~r~~p~~~~~~~ai~~~l~~~~w~~v~ii~~d~--~~g~~~~~~ 183 (930)
.... .....+...++|+|......+ + +.+..+..++...+..++++|...|-++++++.... .....-.+.
T Consensus 74 ~~~~-~~~~~l~~~~iPvV~~~~~~~---~---~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~G 146 (287)
T 3bbl_A 74 NYND-PRVQFLLKQKFPFVAFGRSNP---D---WDFAWVDIDGTAGTRQAVEYLIGRGHRRIAILAWPEDSRVGNDRLQG 146 (287)
T ss_dssp CTTC-HHHHHHHHTTCCEEEESCCST---T---CCCCEEEECHHHHHHHHHHHHHHHTCCCEEEEECCTTCHHHHHHHHH
T ss_pred CCCc-HHHHHHHhcCCCEEEECCcCC---C---CCCCEEEeccHHHHHHHHHHHHHCCCCeEEEEeCCcccccHHHHHHH
Confidence 2211 234445568999998754322 1 123345567777788888888878999999998543 234556788
Q ss_pred HHHHHhhcceEEEEEEecCCCCCCChhHHHHHHHHHHh-C---CceEEEEEcChhhHHHHHHHHHHcCcccCC-eEEEEe
Q 002364 184 LNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVAL-M---ESRVIVLHVSPSLGFQVFSVAKYLGMMGNG-YVWIAT 258 (930)
Q Consensus 184 l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~-~---~~~viil~~~~~~~~~~~~~a~~~g~~~~~-~~~i~~ 258 (930)
+.+++++.|+.+.....+... .+..+....+.++.+ . ++++|+. .+...+..+++++++.|+..++ ...++.
T Consensus 147 f~~~l~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~ai~~-~~d~~a~g~~~al~~~G~~vP~di~vig~ 223 (287)
T 3bbl_A 147 YLEAMQTAQLPIETGYILRGE--GTFEVGRAMTLHLLDLSPERRPTAIMT-LNDTMAIGAMAAARERGLTIGTDLAIIGF 223 (287)
T ss_dssp HHHHHHHTTCCCCGGGEEECC--SSHHHHHHHHHHHHTSCTTTSCSEEEE-SSHHHHHHHHHHHHHTTCCBTTTBEEEEE
T ss_pred HHHHHHHcCCCCChhhEEeCC--CCHHHHHHHHHHHHhhCCCCCCcEEEE-CCcHHHHHHHHHHHHcCCCCCCCEEEEEE
Confidence 899999988764311011111 224444455666654 3 4666654 5667788899999999986443 444444
Q ss_pred C
Q 002364 259 D 259 (930)
Q Consensus 259 ~ 259 (930)
|
T Consensus 224 d 224 (287)
T 3bbl_A 224 D 224 (287)
T ss_dssp S
T ss_pred C
Confidence 3
No 116
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=97.83 E-value=0.00057 Score=73.73 Aligned_cols=209 Identities=9% Similarity=0.013 Sum_probs=129.0
Q ss_pred ceEEEEEEeeCC-CcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCChhH
Q 002364 30 AVVNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCSTV 108 (930)
Q Consensus 30 ~~i~IG~i~~~s-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~s~~ 108 (930)
.+-+||++.|.. .++......+++.+.++ .|+++.+ .++..++.........++.++|.+||-......
T Consensus 57 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~--------~g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~ 126 (340)
T 1qpz_A 57 HTKSIGLLATSSEAAYFAEIIEAVEKNCFQ--------KGYTLIL--GNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEYP 126 (340)
T ss_dssp CCSEEEEEESCSCSHHHHHHHHHHHHHHHH--------TTCEEEE--EECTTCHHHHHHHHHHHHHTTCSEEEECCSCCC
T ss_pred CCCEEEEEeCCCCChHHHHHHHHHHHHHHH--------cCCEEEE--EeCCCCHHHHHHHHHHHHcCCCCEEEEeCCCCC
Confidence 356899999853 44444555666666554 2565544 566667766666667777778988875322211
Q ss_pred HHHHHHhhcc-CCCcEEecccCCCCCCCCCCCceEeecCCchHHHHHHHHHHHhcCccEEEEEEEcC--ccccchHHHHH
Q 002364 109 AHIVSYVSNE-LQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDN--EYGRNGVSALN 185 (930)
Q Consensus 109 ~~~v~~~~~~-~~iP~is~~a~~~~l~~~~~p~~~r~~p~~~~~~~ai~~~l~~~~w~~v~ii~~d~--~~g~~~~~~l~ 185 (930)
. .....+.+ .++|+|......+. . ++...+..++..-+..++++|...|.++++++.... ...+.-.+.+.
T Consensus 127 ~-~~~~~l~~~~~iPvV~~~~~~~~---~--~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~g~~~~~~~~~R~~Gf~ 200 (340)
T 1qpz_A 127 E-PLLAMLEEYRHIPMVVMDWGEAK---A--DFTDAVIDNAFEGGYMAGRYLIERGHREIGVIPGPLERNTGAGRLAGFM 200 (340)
T ss_dssp H-HHHHHHHTTTTSCEEEEEESSCC---C--SSSEEEECCHHHHHHHHHHHHHHHTCCCEEEECCCTTSHHHHHHHHHHH
T ss_pred h-HHHHHHHhhCCCCEEEEecccCC---C--CCCCEEEECHHHHHHHHHHHHHHCCCCEEEEEeCCCccccHHHHHHHHH
Confidence 1 22333333 69999987543321 1 222356677777788888888888999999997542 23455678899
Q ss_pred HHHhhcceEEEEEEecCCCCCCChhHHHHHHHHHHhC--CceEEEEEcChhhHHHHHHHHHHcCcccCC-eEEEE
Q 002364 186 DKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALM--ESRVIVLHVSPSLGFQVFSVAKYLGMMGNG-YVWIA 257 (930)
Q Consensus 186 ~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viil~~~~~~~~~~~~~a~~~g~~~~~-~~~i~ 257 (930)
+++++.|+.+.....+... .+..+....+.++.+. .+++|+. .+...+..+++++++.|+..++ ...++
T Consensus 201 ~al~~~g~~~~~~~~~~~~--~~~~~~~~~~~~ll~~~~~~~ai~~-~nd~~A~g~~~al~~~G~~vP~disvig 272 (340)
T 1qpz_A 201 KAMEEAMIKVPESWIVQGD--FEPESGYRAMQQILSQPHRPTAVFC-GGDIMAMGALCAADEMGLRVPQDVSLIG 272 (340)
T ss_dssp HHHHHTTCCCCGGGBCCCC--SSHHHHHHHHHHHHTSSSCCSEEEE-SSHHHHHHHHHHHHHTTCCTTTTCEEEE
T ss_pred HHHHHCCCCCChhheEeCC--CCHHHHHHHHHHHHcCCCCCcEEEE-CCHHHHHHHHHHHHHcCCCCCCCeEEEe
Confidence 9999998764321111111 2234444555665543 5676664 5667788899999999986544 33444
No 117
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=97.82 E-value=0.00011 Score=76.79 Aligned_cols=205 Identities=10% Similarity=0.002 Sum_probs=126.1
Q ss_pred ceEEEEEEeeCC-CcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCChhH
Q 002364 30 AVVNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCSTV 108 (930)
Q Consensus 30 ~~i~IG~i~~~s-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~s~~ 108 (930)
.+-+||+++|.. .++-.....+++.+.++. |+++.+...+ ++....+....+++++|.+|| ......
T Consensus 4 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~~~~~---~~~~~~~~~~~l~~~~vdgiI-~~~~~~ 71 (280)
T 3gyb_A 4 RTQLIAVLIDDYSNPWFIDLIQSLSDVLTPK--------GYRLSVIDSL---TSQAGTDPITSALSMRPDGII-IAQDIP 71 (280)
T ss_dssp CCCEEEEEESCTTSGGGHHHHHHHHHHHGGG--------TCEEEEECSS---SSCSSSCHHHHHHTTCCSEEE-EESCC-
T ss_pred ccCEEEEEeCCCCChHHHHHHHHHHHHHHHC--------CCEEEEEeCC---CchHHHHHHHHHHhCCCCEEE-ecCCCC
Confidence 356899999864 444455566666555542 5655554433 444334455567777888888 332222
Q ss_pred HHHHHHhhccCCCcEEecccCCCCCCCCCCCceEeecCCchHHHHHHHHHHHhcCccEEEEEEEcCccccchHHHHHHHH
Q 002364 109 AHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKL 188 (930)
Q Consensus 109 ~~~v~~~~~~~~iP~is~~a~~~~l~~~~~p~~~r~~p~~~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l 188 (930)
...+.. .++|+|......+ .+ +.+..+..++...+..++++|...|-++++++.........-.+.+.+++
T Consensus 72 ~~~~~~----~~iPvV~~~~~~~--~~---~~~~~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~R~~gf~~~l 142 (280)
T 3gyb_A 72 DFTVPD----SLPPFVIAGTRIT--QA---STHDSVANDDFRGAEIATKHLIDLGHTHIAHLRVGSGAGLRRFESFEATM 142 (280)
T ss_dssp -----------CCCEEEESCCCS--SS---CSTTEEEECHHHHHHHHHHHHHHTTCCSEEEECCSSHHHHHHHHHHHHHH
T ss_pred hhhHhh----cCCCEEEECCCCC--CC---CCCCEEEechHHHHHHHHHHHHHCCCCeEEEEeCCCchHHHHHHHHHHHH
Confidence 222222 8999998755431 11 22334567778888999999988899999999865544556678899999
Q ss_pred hhcceEEEEEEecCCCCCCChhHHHHHHHHHHhC--CceEEEEEcChhhHHHHHHHHHHcCcccCC-eEEEEeC
Q 002364 189 AERRCRISYKSGIPPESGVNTGYVMDLLVKVALM--ESRVIVLHVSPSLGFQVFSVAKYLGMMGNG-YVWIATD 259 (930)
Q Consensus 189 ~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viil~~~~~~~~~~~~~a~~~g~~~~~-~~~i~~~ 259 (930)
++.|..+.... +... .+..+....+.++.+. .+++|+ +.+...+..++++++++|+..++ ...++.|
T Consensus 143 ~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di~vvg~d 212 (280)
T 3gyb_A 143 RAHGLEPLSND-YLGP--AVEHAGYTETLALLKEHPEVTAIF-SSNDITAIGALGAARELGLRVPEDLSIIGYD 212 (280)
T ss_dssp HHTTCCCEECC-CCSC--CCHHHHHHHHHHHHHHCTTCCEEE-ESSHHHHHHHHHHHHHHTCCTTTTCEEEEES
T ss_pred HHcCcCCCccc-ccCC--CCHHHHHHHHHHHHhCCCCCCEEE-ECChHHHHHHHHHHHHcCCCCCCeeEEEEEC
Confidence 99998765332 2222 3344445555555443 456655 45667788899999999986443 3444443
No 118
>2x26_A Periplasmic aliphatic sulphonates-binding protein; transport protein; 1.75A {Escherichia coli}
Probab=97.82 E-value=0.00012 Score=77.81 Aligned_cols=121 Identities=17% Similarity=0.258 Sum_probs=73.3
Q ss_pred CCCChHHhhhCCCCeEEEeCchHHHHHH---Hhhccccccce-ecCCHHHHHHHHhcCCCCCceEEEEecchhHHHHHhc
Q 002364 681 PINGIESLRKSDDPIGYQEGSFAEYYLS---QELNISKSRLV-ALRTPEDYAKALKDGPGKGGVAAVVDERPYVELFLSS 756 (930)
Q Consensus 681 ~i~s~~dL~~~~~~v~~~~~s~~~~~l~---~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~g~~~a~i~~~~~~~~~~~~ 756 (930)
+|++++||. |+++++..++....++. +..+.....+. .+.+..+...++.+ |++|+++...+...+...+
T Consensus 96 ~i~s~~dL~--Gk~i~~~~gs~~~~~l~~~l~~~Gl~~~~v~~~~~~~~~~~~al~~----G~vDa~~~~~~~~~~~~~~ 169 (308)
T 2x26_A 96 PIKTVADLK--GHKVAFQKGSSSHNLLLRALRQAGLKFTDIQPTYLTPADARAAFQQ----GNVDAWAIWDPYYSAALLQ 169 (308)
T ss_dssp SCCSGGGGT--TSEEEECTTSHHHHHHHHHHHHTTCCGGGSEEEECCHHHHHHHHHT----TSSSEEEEETTHHHHHHHH
T ss_pred CCCCHHHcC--CCEEeeeCCCcHHHHHHHHHHHcCCCHHHeEEEecChHHHHHHHHc----CCCCEEEecchhHHHHHhc
Confidence 688999997 88999987776554432 23344333332 24467888999999 8999998888877766554
Q ss_pred CccEEEeCc--cccccceeeeeC----CCCc-chHHHHHHHHh----hhhcc-chHHHHHHhcc
Q 002364 757 QCSFRIVGQ--EFTKSGWGFAFP----RDSP-LAVDLSSAILE----LAENG-DLQRIHDKWLM 808 (930)
Q Consensus 757 ~~~l~~~~~--~~~~~~~~~~~~----k~sp-l~~~i~~~i~~----l~e~G-~~~~~~~~w~~ 808 (930)
. .+.++.. .+......+++. +..| +.+.|++++.+ +.+++ ...++..+|+.
T Consensus 170 ~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~al~~a~~~~~~~~~~~~~~~~~~~~ 232 (308)
T 2x26_A 170 G-GVRVLKDGTDLNQTGSFYLAARPYAEKNGAFIQGVLATFSEADALTRSQREQSIALLAKTMG 232 (308)
T ss_dssp S-SEEEEEESTTSCCCCEEEEEEHHHHHHTHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHT
T ss_pred C-CcEEEecCCCcCCcceEEEEcHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHhC
Confidence 3 3444322 221222223332 3344 77778777766 34443 35556666654
No 119
>3ctp_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens}
Probab=97.79 E-value=0.00018 Score=77.38 Aligned_cols=200 Identities=11% Similarity=0.021 Sum_probs=125.6
Q ss_pred CceEEEEEEeeCC-CcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCChh
Q 002364 29 PAVVNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCST 107 (930)
Q Consensus 29 ~~~i~IG~i~~~s-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~s~ 107 (930)
..+.+||++.|.. .++......+++.++++ .|+++.+ .++..++.........++.++|.+|| .....
T Consensus 58 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~~~~--------~g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiI-~~~~~ 126 (330)
T 3ctp_A 58 KNSKTIGLMVPNISNPFFNQMASVIEEYAKN--------KGYTLFL--CNTDDDKEKEKTYLEVLQSHRVAGII-ASRSQ 126 (330)
T ss_dssp --CCEEEEEESCTTSHHHHHHHHHHHHHHHH--------TTCEEEE--EECTTCHHHHHHHHHHHHHTTCSEEE-EETCC
T ss_pred CCCCEEEEEeCCCCCcHHHHHHHHHHHHHHH--------CCCEEEE--EeCCCChHHHHHHHHHHHhCCCCEEE-ECCCC
Confidence 3467899999854 33344556666666654 2565544 56666776666667777778899988 43222
Q ss_pred HHHHHHHhhccCCCcEEecccCCCCCCCCCCCceEeecCCchHHHHHHHHHHHhcCccEEEEEEEcCc--cccchHHHHH
Q 002364 108 VAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNE--YGRNGVSALN 185 (930)
Q Consensus 108 ~~~~v~~~~~~~~iP~is~~a~~~~l~~~~~p~~~r~~p~~~~~~~ai~~~l~~~~w~~v~ii~~d~~--~g~~~~~~l~ 185 (930)
.. +.+...++|+|......+. . +..+..++...+..++++|...|.++++++..+.. ....-.+.+.
T Consensus 127 ~~----~~l~~~~iPvV~~~~~~~~----~---~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~ 195 (330)
T 3ctp_A 127 CE----DEYANIDIPVVAFENHILD----N---IITISSDNYNGGRMAFDHLYEKGCRKILHIKGPEVFEATELRYKGFL 195 (330)
T ss_dssp CS----GGGTTCCSCEEEESSCCCT----T---SCEEEECHHHHHHHHHHHHHHTTCCSEEEEECCTTCHHHHHHHHHHH
T ss_pred CH----HHHHhcCCCEEEEeccCCC----C---CCEEEeCHHHHHHHHHHHHHHCCCCeEEEEeCCccCccHHHHHHHHH
Confidence 21 3355789999987543321 1 23455667777788889888889999999986532 4456678899
Q ss_pred HHHhhcceEEEEEEecCCCCCCChhHHHHHHHHHHh-CCceEEEEEcChhhHHHHHHHHHHcCcccCCeE
Q 002364 186 DKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVAL-MESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYV 254 (930)
Q Consensus 186 ~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~-~~~~viil~~~~~~~~~~~~~a~~~g~~~~~~~ 254 (930)
+++++.|+.+. ...+... .+..+-...+.++.+ .++++|+. .+...+..+++++++.|+..++-+
T Consensus 196 ~al~~~g~~~~-~~~~~~~--~~~~~~~~~~~~ll~~~~~~ai~~-~~d~~A~g~~~al~~~G~~vP~di 261 (330)
T 3ctp_A 196 DGARAKDLEID-FIEFQHD--FQVKMLEEDINSMKDIVNYDGIFV-FNDIAAATVMRALKKRGVSIPQEV 261 (330)
T ss_dssp HHHHHTTCCCE-EEECSSS--CCGGGGGCCCTTGGGGGGSSEEEE-SSHHHHHHHHHHHHHTTCCTTTTC
T ss_pred HHHHHcCCCcc-eeEEcCC--CCHHHHHHHHHHHhcCCCCcEEEE-CCHHHHHHHHHHHHHcCCCCCCCe
Confidence 99999998665 3222222 122222222333333 35677665 456677889999999998654433
No 120
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=97.76 E-value=0.0017 Score=68.28 Aligned_cols=210 Identities=10% Similarity=0.066 Sum_probs=128.4
Q ss_pred CceEEEEEEeeCC------CcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEc
Q 002364 29 PAVVNVGALFTLD------STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIG 102 (930)
Q Consensus 29 ~~~i~IG~i~~~s------~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiG 102 (930)
..+-+||+++|.. .++-.....+++-+.++ .|+++ .+.++..++.........+..++|.+||-
T Consensus 5 ~~s~~Igvi~~~~~~~~~~~~f~~~~~~gi~~~a~~--------~g~~~--~~~~~~~~~~~~~~~~~~l~~~~vdGiI~ 74 (295)
T 3hcw_A 5 NQTYKIGLVLKGSEEPIRLNPFYINVLLGISETCNQ--------HGYGT--QTTVSNNMNDLMDEVYKMIKQRMVDAFIL 74 (295)
T ss_dssp CCSCEEEEECSCCCHHHHSCHHHHHHHHHHHHHHHT--------TTCEE--EECCCCSHHHHHHHHHHHHHTTCCSEEEE
T ss_pred CCCcEEEEEeecCCcccccChHHHHHHHHHHHHHHH--------CCCEE--EEEcCCCChHHHHHHHHHHHhCCcCEEEE
Confidence 3467899999642 22223334444444332 25555 45566655555555556666778888874
Q ss_pred CCChhHHHHHHHhhccCCCcEEecccCCCCCCCCCCCceEeecCCchHHHHHHHHHHHhcCccEEEEEEEcCc--cccch
Q 002364 103 PQCSTVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNE--YGRNG 180 (930)
Q Consensus 103 p~~s~~~~~v~~~~~~~~iP~is~~a~~~~l~~~~~p~~~r~~p~~~~~~~ai~~~l~~~~w~~v~ii~~d~~--~g~~~ 180 (930)
...... ......+...++|+|......+.. . ..+..+..++..-+..++++|...|-++++++..... ....-
T Consensus 75 ~~~~~~-~~~~~~l~~~~iPvV~i~~~~~~~--~--~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R 149 (295)
T 3hcw_A 75 LYSKEN-DPIKQMLIDESMPFIVIGKPTSDI--D--HQFTHIDNDNILASENLTRHVIEQGVDELIFITEKGNFEVSKDR 149 (295)
T ss_dssp SCCCTT-CHHHHHHHHTTCCEEEESCCCSSG--G--GGSCEEEECHHHHHHHHHHHHHHHCCSEEEEEEESSCCHHHHHH
T ss_pred cCcccC-hHHHHHHHhCCCCEEEECCCCccc--c--CCceEEecCcHHHHHHHHHHHHHcCCccEEEEcCCccchhHHHH
Confidence 322221 234555667899999865432211 0 0234455677777888888888889999999986433 34556
Q ss_pred HHHHHHHHhhcceEEEEEEecCCCCCCChhHHHHHHHHHHhC-----CceEEEEEcChhhHHHHHHHHHHcCcccCC-eE
Q 002364 181 VSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALM-----ESRVIVLHVSPSLGFQVFSVAKYLGMMGNG-YV 254 (930)
Q Consensus 181 ~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~-----~~~viil~~~~~~~~~~~~~a~~~g~~~~~-~~ 254 (930)
.+.+++++++.|+.+... ... .+..+....+.++.+. .+++|+ +.+...+..++++++++|+..++ ..
T Consensus 150 ~~Gf~~al~~~g~~~~~~-~~~----~~~~~~~~~~~~~l~~~~~~~~~~ai~-~~~d~~A~g~~~al~~~g~~vP~di~ 223 (295)
T 3hcw_A 150 IQGFETVASQFNLDYQII-ETS----NEREVILNYMQNLHTRLKDPNIKQAII-SLDAMLHLAILSVLYELNIEIPKDVM 223 (295)
T ss_dssp HHHHHHHHHHTTCEEEEE-EEC----SCHHHHHHHHHHHHHHHTCTTSCEEEE-ESSHHHHHHHHHHHHHTTCCTTTTEE
T ss_pred HHHHHHHHHHcCCCeeEE-ecc----CCHHHHHHHHHHHHhhcccCCCCcEEE-ECChHHHHHHHHHHHHcCCCCCCceE
Confidence 788999999999876522 112 2244444445544332 567765 56667788899999999986554 34
Q ss_pred EEEeC
Q 002364 255 WIATD 259 (930)
Q Consensus 255 ~i~~~ 259 (930)
.++-|
T Consensus 224 vig~D 228 (295)
T 3hcw_A 224 TATFN 228 (295)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 44433
No 121
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=97.76 E-value=0.0014 Score=69.76 Aligned_cols=200 Identities=8% Similarity=-0.018 Sum_probs=130.5
Q ss_pred eEEEEEEeeC-CCcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEc-CCChhH
Q 002364 31 VVNVGALFTL-DSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIG-PQCSTV 108 (930)
Q Consensus 31 ~i~IG~i~~~-s~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiG-p~~s~~ 108 (930)
+.+||+++|. +.++-.....+++.+.++. |+++. +.++..++....+....++.+++.+||- |.....
T Consensus 2 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~--~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~ 71 (313)
T 3m9w_A 2 EVKIGMAIDDLRLERWQKDRDIFVKKAESL--------GAKVF--VQSANGNEETQMSQIENMINRGVDVLVIIPYNGQV 71 (313)
T ss_dssp -CEEEEEESCCSSSTTHHHHHHHHHHHHHT--------SCEEE--EEECTTCHHHHHHHHHHHHHTTCSEEEEECSSTTS
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHHHc--------CCEEE--EECCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhh
Confidence 3579999995 3445456677777777663 45444 5566777777777778888888888764 444443
Q ss_pred HHHHHHhhccCCCcEEecccCCCCCCCCCCCceEeecCCchHHHHHHHHHHH-hcCccEEEEEEEcC--ccccchHHHHH
Q 002364 109 AHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVS-YYGWNAVSVIFVDN--EYGRNGVSALN 185 (930)
Q Consensus 109 ~~~v~~~~~~~~iP~is~~a~~~~l~~~~~p~~~r~~p~~~~~~~ai~~~l~-~~~w~~v~ii~~d~--~~g~~~~~~l~ 185 (930)
.......+.+.++|+|......+. . +....+..++...+..++++|. ..|-++++++..+. .....-.+.++
T Consensus 72 ~~~~~~~~~~~~iPvV~~~~~~~~---~--~~~~~V~~D~~~~g~~a~~~L~~~~G~~~i~~i~g~~~~~~~~~R~~Gf~ 146 (313)
T 3m9w_A 72 LSNVVKEAKQEGIKVLAYDRMIND---A--DIDFYISFDNEKVGELQAKALVDIVPQGNYFLMGGSPVDNNAKLFRAGQM 146 (313)
T ss_dssp CHHHHHHHHTTTCEEEEESSCCTT---S--CCSEEEEECHHHHHHHHHHHHHHHCSSEEEEEEESCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHCCCeEEEECCcCCC---C--CceEEEecCHHHHHHHHHHHHHHhCCCCcEEEEECCCCCccHHHHHHHHH
Confidence 345566677889999987544322 1 1113456677788888999877 88999999997432 23444567888
Q ss_pred HHHhhc----ceEEEEEEecCCCCCCChhHHHHHHHHHHh---CCceEEEEEcChhhHHHHHHHHHHcCcc
Q 002364 186 DKLAER----RCRISYKSGIPPESGVNTGYVMDLLVKVAL---MESRVIVLHVSPSLGFQVFSVAKYLGMM 249 (930)
Q Consensus 186 ~~l~~~----g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~---~~~~viil~~~~~~~~~~~~~a~~~g~~ 249 (930)
+++++. ++.+..... ... .+.......+.++.+ .++++|+ +.+...+..++++++++|+.
T Consensus 147 ~~l~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~l~~~~~~~~ai~-~~~d~~a~g~~~al~~~G~~ 213 (313)
T 3m9w_A 147 KVLKPYVDSGKIKVVGDQW-VDG--WLPENALKIMENALTANNNKIDAVV-ASNDATAGGAIQALSAQGLS 213 (313)
T ss_dssp HHHHHHHHTTSEEEEEEEE-CGG--GCHHHHHHHHHHHHHHTTTCCCEEE-ESSHHHHHHHHHHHHTTTCT
T ss_pred HHHHhhccCCCEEEEeecc-CCC--cCHHHHHHHHHHHHHhCCCCeeEEE-ECCCchHHHHHHHHHHcCCC
Confidence 888877 566654332 211 124444445555443 2456654 44667788899999999985
No 122
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=97.74 E-value=0.0002 Score=75.35 Aligned_cols=211 Identities=10% Similarity=0.030 Sum_probs=131.8
Q ss_pred CceEEEEEEeeCC-CcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCChh
Q 002364 29 PAVVNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCST 107 (930)
Q Consensus 29 ~~~i~IG~i~~~s-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~s~ 107 (930)
..+-+||+++|.. .++-.....+++.+.++. |+++. +.++..++....+....++.++|.+||-.....
T Consensus 6 ~~~~~Igvv~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~ 75 (291)
T 3egc_A 6 KRSNVVGLIVSDIENVFFAEVASGVESEARHK--------GYSVL--LANTAEDIVREREAVGQFFERRVDGLILAPSEG 75 (291)
T ss_dssp -CCCEEEEEESCTTSHHHHHHHHHHHHHHHHT--------TCEEE--EEECTTCHHHHHHHHHHHHHTTCSEEEECCCSS
T ss_pred CCCcEEEEEECCCcchHHHHHHHHHHHHHHHC--------CCEEE--EEeCCCCHHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence 3467899999864 333344556666555552 45544 556666777777777777788888887533322
Q ss_pred HHHHHHHhhccCCCcEEecccCCCCCCCCCCCceEeecCCchHHHHHHHHHHHhcCccEEEEEEEcC--ccccchHHHHH
Q 002364 108 VAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDN--EYGRNGVSALN 185 (930)
Q Consensus 108 ~~~~v~~~~~~~~iP~is~~a~~~~l~~~~~p~~~r~~p~~~~~~~ai~~~l~~~~w~~v~ii~~d~--~~g~~~~~~l~ 185 (930)
.......+...++|+|......+. +.+..+..++...+..++++|...|-++++++.... .....-.+.+.
T Consensus 76 -~~~~~~~~~~~~iPvV~~~~~~~~------~~~~~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~ 148 (291)
T 3egc_A 76 -EHDYLRTELPKTFPIVAVNRELRI------PGCGAVLSENVRGARTAVEYLIARGHTRIGAIVGSAGLMTSRERLKGFR 148 (291)
T ss_dssp -CCHHHHHSSCTTSCEEEESSCCCC------TTCEEEEECHHHHHHHHHHHHHHTTCCSEEEECSCTTSHHHHHHHHHHH
T ss_pred -ChHHHHHhhccCCCEEEEecccCC------CCCCEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCCCCcCHHHHHHHHH
Confidence 334556677889999987544321 224556677888888999998888999999997543 34455678899
Q ss_pred HHHhhcceEEEEEEecCCCCCCChhHHHHHHHHHHh--CCceEEEEEcChhhHHHHHHHHHHcCcccCC-eEEEEeC
Q 002364 186 DKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVAL--MESRVIVLHVSPSLGFQVFSVAKYLGMMGNG-YVWIATD 259 (930)
Q Consensus 186 ~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~viil~~~~~~~~~~~~~a~~~g~~~~~-~~~i~~~ 259 (930)
+++++.|+.+......... .+.......+.++.+ .++++|+ +.+...+..++++++++|+..++ ...++.|
T Consensus 149 ~~l~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di~vvg~d 222 (291)
T 3egc_A 149 AAMSAAGLPVRQEWIAAGG--VRADNGRDGAIKVLTGADRPTALL-TSSHRITEGAMQALNVLGLRYGPDVEIVSFD 222 (291)
T ss_dssp HHHHHTTCCCCGGGEEC--------CCHHHHHHHHTC-CCCSEEE-ESSHHHHHHHHHHHHHHTCCBTTTBEEEEES
T ss_pred HHHHHcCCCCCHHHeEeCC--CChhHHHHHHHHHHhCCCCCcEEE-ECCcHHHHHHHHHHHHcCCCCCCceEEEEec
Confidence 9999988754211011111 112222233444432 3567665 46667788899999999986544 3444433
No 123
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=97.72 E-value=0.0012 Score=68.60 Aligned_cols=206 Identities=10% Similarity=0.004 Sum_probs=127.4
Q ss_pred CceEEEEEEeeCC-CcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCChh
Q 002364 29 PAVVNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCST 107 (930)
Q Consensus 29 ~~~i~IG~i~~~s-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~s~ 107 (930)
..+-+||+++|.. .++-.....+++-+.++ .|+++. +.++..++....+....++.++|.+||-.....
T Consensus 5 ~~s~~Igvi~~~~~~~~~~~~~~gi~~~~~~--------~g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~ 74 (276)
T 3jy6_A 5 QSSKLIAVIVANIDDYFSTELFKGISSILES--------RGYIGV--LFDANADIEREKTLLRAIGSRGFDGLILQSFSN 74 (276)
T ss_dssp CCCCEEEEEESCTTSHHHHHHHHHHHHHHHT--------TTCEEE--EEECTTCHHHHHHHHHHHHTTTCSEEEEESSCC
T ss_pred CCCcEEEEEeCCCCchHHHHHHHHHHHHHHH--------CCCEEE--EEeCCCCHHHHHHHHHHHHhCCCCEEEEecCCc
Confidence 4567899999864 33333444555444443 245554 456666666666666777777888887433333
Q ss_pred HHHHHHHhhccCCCcEEecccCCCCCCCCCCCceEeecCCchHHHHHHHHHHHhcCccEEEEEEEcCc-c--ccchHHHH
Q 002364 108 VAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNE-Y--GRNGVSAL 184 (930)
Q Consensus 108 ~~~~v~~~~~~~~iP~is~~a~~~~l~~~~~p~~~r~~p~~~~~~~ai~~~l~~~~w~~v~ii~~d~~-~--g~~~~~~l 184 (930)
......+.+.++|+|......+ +.. +-.+..++..-+..++++|...|-++++++..+.. + ...-.+.+
T Consensus 75 --~~~~~~l~~~~iPvV~i~~~~~---~~~---~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~gf 146 (276)
T 3jy6_A 75 --PQTVQEILHQQMPVVSVDREMD---ACP---WPQVVTDNFEAAKAATTAFRQQGYQHVVVLTSELELSRTRQERYRGI 146 (276)
T ss_dssp --HHHHHHHHTTSSCEEEESCCCT---TCS---SCEEECCHHHHHHHHHHHHHTTTCCEEEEEEECSTTCHHHHHHHHHH
T ss_pred --HHHHHHHHHCCCCEEEEecccC---CCC---CCEEEEChHHHHHHHHHHHHHcCCCeEEEEecCCCCCchHHHHHHHH
Confidence 4556667778999998754322 111 23456777888999999999999999999986543 2 24456777
Q ss_pred HHHHhhcceEEEEEEecCCCCCCChhHHHHHHHHHHh-CCceEEEEEcChhhHHHHHHHHHHcCcccCCeE-EEEe
Q 002364 185 NDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVAL-MESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYV-WIAT 258 (930)
Q Consensus 185 ~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~-~~~~viil~~~~~~~~~~~~~a~~~g~~~~~~~-~i~~ 258 (930)
++++++.+. +. +..........+....+.++. .++++|+ +.+...+..++++++++|+..++-+ .++.
T Consensus 147 ~~~l~~~~~-~~----~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di~vig~ 216 (276)
T 3jy6_A 147 LAAAQDVDV-LE----VSESSYNHSEVHQRLTQLITQNDQKTVAF-ALKERWLLEFFPNLIISGLIDNQTVTATGF 216 (276)
T ss_dssp HTTCSEEEE-EE----ECSSSCCHHHHHHHHHHHHHSSSSCEEEE-ESSHHHHHHHSHHHHHSSSCCSSSEEEEEB
T ss_pred HHHHHhCCc-EE----EeccccCCcHHHHHHHHHHhcCCCCcEEE-EeCcHHHHHHHHHHHHcCCCCCCcEEEEEE
Confidence 788877753 21 111100112334444444443 3456655 4667778889999999998755444 4443
No 124
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=97.71 E-value=0.001 Score=69.71 Aligned_cols=204 Identities=10% Similarity=0.022 Sum_probs=123.7
Q ss_pred CceEEEEEEeeCCC---cchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEc-CC
Q 002364 29 PAVVNVGALFTLDS---TIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIG-PQ 104 (930)
Q Consensus 29 ~~~i~IG~i~~~s~---~~g~~~~~a~~~Av~~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiG-p~ 104 (930)
..+-+||+++|... ++-.....+++-++++ .|+++.+ .+...++.........+..++|.+||- |.
T Consensus 6 ~~s~~Igvv~~~~~~~~~~~~~~~~gi~~~a~~--------~g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 75 (288)
T 3gv0_A 6 GKTNVIALVLSVDEELMGFTSQMVFGITEVLST--------TQYHLVV--TPHIHAKDSMVPIRYILETGSADGVIISKI 75 (288)
T ss_dssp -CCCEEEEECBCCCCSSCHHHHHHHHHHHHHTT--------SSCEEEE--CCBSSGGGTTHHHHHHHHHTCCSEEEEESC
T ss_pred CCCCEEEEEecCCccccHHHHHHHHHHHHHHHH--------cCCEEEE--ecCCcchhHHHHHHHHHHcCCccEEEEecC
Confidence 34678999999643 3323334444433322 2565554 444443333222223344567777763 22
Q ss_pred ChhHHHHHHHhhccCCCcEEecccCCCCCCCCCCCceEeecCCchHHHHHHHHHHHhcCccEEEEEEEcCc--cccchHH
Q 002364 105 CSTVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNE--YGRNGVS 182 (930)
Q Consensus 105 ~s~~~~~v~~~~~~~~iP~is~~a~~~~l~~~~~p~~~r~~p~~~~~~~ai~~~l~~~~w~~v~ii~~d~~--~g~~~~~ 182 (930)
... ......+.+.++|+|......+ + +.+-.+..++...+..++++|...|-++++++..+.. ....-.+
T Consensus 76 ~~~--~~~~~~l~~~~iPvV~i~~~~~---~---~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~ 147 (288)
T 3gv0_A 76 EPN--DPRVRFMTERNMPFVTHGRSDM---G---IEHAFHDFDNEAYAYEAVERLAQCGRKRIAVIVPPSRFSFHDHARK 147 (288)
T ss_dssp CTT--CHHHHHHHHTTCCEEEESCCCS---S---CCCEEEEECHHHHHHHHHHHHHHTTCCEEEEECCCTTSHHHHHHHH
T ss_pred CCC--cHHHHHHhhCCCCEEEECCcCC---C---CCCcEEEeCcHHHHHHHHHHHHHCCCCeEEEEcCCcccchHHHHHH
Confidence 222 1334556678999998654322 1 1233466777888899999998889999999975433 3455678
Q ss_pred HHHHHHhhcceEEEEEEecCCCCCCChhHHHHHHHHHHhC--CceEEEEEcChhhHHHHHHHHHHcCcccCCe
Q 002364 183 ALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALM--ESRVIVLHVSPSLGFQVFSVAKYLGMMGNGY 253 (930)
Q Consensus 183 ~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viil~~~~~~~~~~~~~a~~~g~~~~~~ 253 (930)
.+.+++++.|+.+.....+... .+..+....+.++.+. .+++|+ +.+...+..+++++++.|+..++-
T Consensus 148 gf~~~l~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~A~g~~~al~~~g~~vP~d 217 (288)
T 3gv0_A 148 GFNRGIRDFGLTEFPIDAVTIE--TPLEKIRDFGQRLMQSSDRPDGIV-SISGSSTIALVAGFEAAGVKIGED 217 (288)
T ss_dssp HHHHHHHHTTCEECCCCSCCTT--SCHHHHHHHHHHHTTSSSCCSEEE-ESCHHHHHHHHHHHHTTTCCTTTS
T ss_pred HHHHHHHHcCCCcchhheeccc--cchHHHHHHHHHHHhCCCCCcEEE-EcCcHHHHHHHHHHHHcCCCCCCc
Confidence 8999999999876532222222 3345555666666554 456655 556677888999999999865443
No 125
>3uif_A Sulfonate ABC transporter, periplasmic sulfonate- protein SSUA; structural genomics; 2.60A {Methylobacillus flagellatus}
Probab=97.67 E-value=0.00027 Score=76.59 Aligned_cols=108 Identities=19% Similarity=0.111 Sum_probs=63.0
Q ss_pred CCCCChHHhhhCCCCeEEEeCchHHHHHH---Hhhccccccceec-CCHHHHHHHHhcCCCCCceEEEEecchhHHHHHh
Q 002364 680 SPINGIESLRKSDDPIGYQEGSFAEYYLS---QELNISKSRLVAL-RTPEDYAKALKDGPGKGGVAAVVDERPYVELFLS 755 (930)
Q Consensus 680 ~~i~s~~dL~~~~~~v~~~~~s~~~~~l~---~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~g~~~a~i~~~~~~~~~~~ 755 (930)
.+|++++||. |++|++..|+.....+. +..+++...+... -+..+...+|.+ |++|+++...+.......
T Consensus 109 s~i~s~~DLk--Gk~I~v~~gs~~~~~~~~~l~~~Gl~~~~v~~v~~~~~~~~~al~~----G~vDa~~~~~~~~~~~~~ 182 (348)
T 3uif_A 109 STAKSIKDLK--GKKIALHRGRPWELAFSNLLQSEGLTFKDFKIVNVNPQVGAAALAS----GTVDGFFSLFDSYILEDR 182 (348)
T ss_dssp CCCCSGGGGT--TSEEEECTTSTHHHHHHHHHHHTTCCGGGSEEECCCHHHHHHHHHH----TSSSEEEESTTHHHHHHT
T ss_pred CCCCCHHHcC--CCEEEecCCChHHHHHHHHHHHcCCCHHHeEEEECCHHHHHHHHHc----CCCCEEEechHHHHHHhc
Confidence 3799999997 99999987776544332 2334433333222 256788999999 899999887776643322
Q ss_pred cCccEEEeCccc---cccceeeeeCCC----Cc-chHHHHHHHHhh
Q 002364 756 SQCSFRIVGQEF---TKSGWGFAFPRD----SP-LAVDLSSAILEL 793 (930)
Q Consensus 756 ~~~~l~~~~~~~---~~~~~~~~~~k~----sp-l~~~i~~~i~~l 793 (930)
...+........ .....+++++++ .| ..+.|.+++.+-
T Consensus 183 g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~a~~~a 228 (348)
T 3uif_A 183 GVGKIIWSTKTAPVDWKLMGGVWARNDFVKQNPEITQAIVTAYLKS 228 (348)
T ss_dssp TSEEEEEEGGGSCGGGSCCEEEEEEHHHHHHCHHHHHHHHHHHHHH
T ss_pred CCcEEEEeccccCCCCcceeEEEECHHHHHHCHHHHHHHHHHHHHH
Confidence 222222222222 122346666665 44 555555555443
No 126
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=97.65 E-value=0.0016 Score=68.23 Aligned_cols=207 Identities=12% Similarity=0.026 Sum_probs=127.1
Q ss_pred CceEEEEEEeeCCCcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCChhH
Q 002364 29 PAVVNVGALFTLDSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCSTV 108 (930)
Q Consensus 29 ~~~i~IG~i~~~s~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~s~~ 108 (930)
..+-+||++++.+.++-.....+++-+.++. |+++.+...+.. .. ..+....++.++|.+||-......
T Consensus 10 ~~~~~Igvi~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~~~~~~~--~~-~~~~~~~l~~~~vdgiIi~~~~~~ 78 (289)
T 3k9c_A 10 ASSRLLGVVFELQQPFHGDLVEQIYAAATRR--------GYDVMLSAVAPS--RA-EKVAVQALMRERCEAAILLGTRFD 78 (289)
T ss_dssp ---CEEEEEEETTCHHHHHHHHHHHHHHHHT--------TCEEEEEEEBTT--BC-HHHHHHHHTTTTEEEEEEETCCCC
T ss_pred CCCCEEEEEEecCCchHHHHHHHHHHHHHHC--------CCEEEEEeCCCC--HH-HHHHHHHHHhCCCCEEEEECCCCC
Confidence 3467899999555544445556666555552 566665544433 22 344556667778988874332222
Q ss_pred HHHHHHhhccCCCcEEecccCCCCCCCCCCCceEeecCCchHHHHHHHHHHHhcCccEEEEEEEcCc-cccchHHHHHHH
Q 002364 109 AHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNE-YGRNGVSALNDK 187 (930)
Q Consensus 109 ~~~v~~~~~~~~iP~is~~a~~~~l~~~~~p~~~r~~p~~~~~~~ai~~~l~~~~w~~v~ii~~d~~-~g~~~~~~l~~~ 187 (930)
.. ....+.. ++|+|......+ + +.+-.+..++..-+..++++|...|-++++++..... ....-.+.++++
T Consensus 79 ~~-~~~~~~~-~iPvV~i~~~~~---~---~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~R~~Gf~~a 150 (289)
T 3k9c_A 79 TD-ELGALAD-RVPALVVARASG---L---PGVGAVRGDDVAGITLAVDHLTELGHRNIAHIDGADAPGGADRRAGFLAA 150 (289)
T ss_dssp HH-HHHHHHT-TSCEEEESSCCS---S---TTSEEEEECHHHHHHHHHHHHHHTTCCSEEEECCTTSTTHHHHHHHHHHH
T ss_pred HH-HHHHHHc-CCCEEEEcCCCC---C---CCCCEEEeChHHHHHHHHHHHHHCCCCcEEEEeCCCCccHHHHHHHHHHH
Confidence 23 3344455 999998654332 1 2234566777888888999988899999999985433 344557889999
Q ss_pred HhhcceEEEEEEecCCCCCCChhHHHHHHHHHHhC--CceEEEEEcChhhHHHHHHHHHHcCcccCC-eEEEEe
Q 002364 188 LAERRCRISYKSGIPPESGVNTGYVMDLLVKVALM--ESRVIVLHVSPSLGFQVFSVAKYLGMMGNG-YVWIAT 258 (930)
Q Consensus 188 l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viil~~~~~~~~~~~~~a~~~g~~~~~-~~~i~~ 258 (930)
+++.|+.+... .+... .+..+....+.++.+. .+++|+ +.+...+..+++++++.|+..++ ...++-
T Consensus 151 l~~~g~~~~~~-~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~A~g~~~al~~~g~~vP~di~vig~ 220 (289)
T 3k9c_A 151 MDRHGLSASAT-VVTGG--TTETEGAEGMHTLLEMPTPPTAVV-AFNDRCATGVLDLLVRSGRDVPADISVVGY 220 (289)
T ss_dssp HHHTTCGGGEE-EECCC--SSHHHHHHHHHHHHTSSSCCSEEE-ESSHHHHHHHHHHHHHTTCCTTTTCEEEEE
T ss_pred HHHCCCCCCcc-EEECC--CCHHHHHHHHHHHHcCCCCCCEEE-ECChHHHHHHHHHHHHcCCCCCCceEEEEE
Confidence 99998763221 12222 2345555566666553 456654 45667788899999999986554 334443
No 127
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=97.65 E-value=0.0048 Score=63.87 Aligned_cols=204 Identities=6% Similarity=0.053 Sum_probs=121.8
Q ss_pred EEEEEeeCC-CcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEc-CCChhHHH
Q 002364 33 NVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIG-PQCSTVAH 110 (930)
Q Consensus 33 ~IG~i~~~s-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiG-p~~s~~~~ 110 (930)
+||++.|.. .++-.....+++.+.++. |+++. +.++..++..-......++.++|.++|- |.......
T Consensus 3 ~Igvi~~~~~~~f~~~~~~gi~~~~~~~--------g~~~~--~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~ 72 (271)
T 2dri_A 3 TIALVVSTLNNPFFVSLKDGAQKEADKL--------GYNLV--VLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVG 72 (271)
T ss_dssp EEEEEESCSSSHHHHHHHHHHHHHHHHH--------TCEEE--EEECTTCHHHHHHHHHHHTTTTEEEEEECCSSTTTTH
T ss_pred EEEEEecCCCCHHHHHHHHHHHHHHHHc--------CcEEE--EeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHH
Confidence 589998753 333344556666555543 45544 4556666665555566677778988764 43333222
Q ss_pred HHHHhhccCCCcEEecccCCCCCCCCCCCceEeecCCchHHHHHHHHHHHhc--CccEEEEEEEcCc--cccchHHHHHH
Q 002364 111 IVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYY--GWNAVSVIFVDNE--YGRNGVSALND 186 (930)
Q Consensus 111 ~v~~~~~~~~iP~is~~a~~~~l~~~~~p~~~r~~p~~~~~~~ai~~~l~~~--~w~~v~ii~~d~~--~g~~~~~~l~~ 186 (930)
.....+...++|+|......+ .. +....+..++..-+..++++|... +-++++++..... ..+.-.+.+++
T Consensus 73 ~~~~~~~~~~iPvV~i~~~~~---~~--~~~~~V~~D~~~~g~~a~~~L~~~g~g~~~I~~i~g~~~~~~~~~R~~Gf~~ 147 (271)
T 2dri_A 73 NAVKMANQANIPVITLDRQAT---KG--EVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQ 147 (271)
T ss_dssp HHHHHHHHTTCCEEEESSCCS---SS--CCSEEEEECHHHHHHHHHHHHHHHHCTTCEEEEEECCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCcEEEecCCCC---CC--ceeEEEecChHHHHHHHHHHHHHHcCCCCeEEEEECCCCCccHhHHHHHHHH
Confidence 334455668999998754321 11 112235566677778888887665 5689999974322 23445678899
Q ss_pred HHhhcceEEEEEEecCCCCCCChhHHHHHHHHHHh--CCceEEEEEcChhhHHHHHHHHHHcCcccCCeEEEEe
Q 002364 187 KLAERRCRISYKSGIPPESGVNTGYVMDLLVKVAL--MESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIAT 258 (930)
Q Consensus 187 ~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~viil~~~~~~~~~~~~~a~~~g~~~~~~~~i~~ 258 (930)
++++.|+++..... .. .+...-...++++.+ ..+++ |++.+...+..+++++++.|+ .+...++-
T Consensus 148 al~~~g~~~~~~~~--~~--~~~~~~~~~~~~ll~~~~~~~a-i~~~nD~~A~g~~~al~~~g~--~dv~vvGf 214 (271)
T 2dri_A 148 AVAAHKFNVLASQP--AD--FDRIKGLNVMQNLLTAHPDVQA-VFAQNDEMALGALRALQTAGK--SDVMVVGF 214 (271)
T ss_dssp HHHHHTCEEEEEEE--CT--TCHHHHHHHHHHHHHHCTTCCE-EEESSHHHHHHHHHHHHHHTC--CSCEEEEE
T ss_pred HHhcCCCEEEEecC--CC--CCHHHHHHHHHHHHHhCCCccE-EEECCCcHHHHHHHHHHHcCC--CCcEEEEe
Confidence 99999987653221 11 223343344555433 24555 445566778889999999997 34444443
No 128
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=97.64 E-value=0.00089 Score=72.35 Aligned_cols=208 Identities=8% Similarity=-0.016 Sum_probs=130.1
Q ss_pred CceEEEEEEeeCC-CcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCChh
Q 002364 29 PAVVNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCST 107 (930)
Q Consensus 29 ~~~i~IG~i~~~s-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~s~ 107 (930)
..+-+||+++|.. .++-.....+++-+.++ .|+++. +.++..++..-.+....++.++|.+||-.....
T Consensus 66 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~--------~g~~~~--~~~~~~~~~~~~~~i~~l~~~~vdGiIi~~~~~ 135 (344)
T 3kjx_A 66 NRVNLVAVIIPSLSNMVFPEVLTGINQVLED--------TELQPV--VGVTDYLPEKEEKVLYEMLSWRPSGVIIAGLEH 135 (344)
T ss_dssp SCCSEEEEEESCSSSSSHHHHHHHHHHHHTS--------SSSEEE--EEECTTCHHHHHHHHHHHHTTCCSEEEEECSCC
T ss_pred CCCCEEEEEeCCCCcHHHHHHHHHHHHHHHH--------CCCEEE--EEeCCCCHHHHHHHHHHHHhCCCCEEEEECCCC
Confidence 3467899999864 33333444444443332 256654 456666777766677777887888776422221
Q ss_pred HHHHHHHhhccCCCcEEecccCCCCCCCCCCCceEeecCCchHHHHHHHHHHHhcCccEEEEEEEcC---ccccchHHHH
Q 002364 108 VAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDN---EYGRNGVSAL 184 (930)
Q Consensus 108 ~~~~v~~~~~~~~iP~is~~a~~~~l~~~~~p~~~r~~p~~~~~~~ai~~~l~~~~w~~v~ii~~d~---~~g~~~~~~l 184 (930)
. ......+...++|+|...... . .+.......++..-+..++++|...|-++++++.... .....-.+.+
T Consensus 136 ~-~~~~~~l~~~~iPvV~i~~~~---~---~~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~Gf 208 (344)
T 3kjx_A 136 S-EAARAMLDAAGIPVVEIMDSD---G---KPVDAMVGISHRRAGREMAQAILKAGYRRIGFMGTKMPLDYRARKRFEGF 208 (344)
T ss_dssp C-HHHHHHHHHCSSCEEEEEECS---S---CCSSEEEEECHHHHHHHHHHHHHHHTCCSCCEEESSTTTCHHHHHHHHHH
T ss_pred C-HHHHHHHHhCCCCEEEEeCCC---C---CCCCCEEEECcHHHHHHHHHHHHHCCCCeEEEEecCcccCccHHHHHHHH
Confidence 2 244556677899999874211 1 1223456677778888889988888999999998543 2344557889
Q ss_pred HHHHhhcceEEEEEEecCCCCCCChhHHHHHHHHHHh--CCceEEEEEcChhhHHHHHHHHHHcCcccCCeEEE
Q 002364 185 NDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVAL--MESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWI 256 (930)
Q Consensus 185 ~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~viil~~~~~~~~~~~~~a~~~g~~~~~~~~i 256 (930)
.+++++.|+.+.....+... .+...-...+.++.+ .++++|+ +.+...+..+++++++.|+..++-+-+
T Consensus 209 ~~al~~~g~~~~~~~~~~~~--~~~~~~~~~~~~ll~~~~~~~ai~-~~nd~~A~g~~~al~~~g~~vP~disv 279 (344)
T 3kjx_A 209 TEVLGKNGVEIEDREFYSGG--SALAKGREMTQAMLERSPDLDFLY-YSNDMIAAGGLLYLLEQGIDIPGQIGL 279 (344)
T ss_dssp HHHHHHTTCCCSCEEECSSC--CCHHHHHHHHHHHHHHSTTCCEEE-ESSHHHHHHHHHHHHHTTCCTTTTCEE
T ss_pred HHHHHHcCCCCChheEEeCC--CCHHHHHHHHHHHHhcCCCCCEEE-ECCHHHHHHHHHHHHHcCCCCCCceEE
Confidence 99999998765433323222 233444444554433 2567666 556677888999999999865544433
No 129
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=97.63 E-value=0.00059 Score=71.86 Aligned_cols=208 Identities=11% Similarity=0.011 Sum_probs=125.5
Q ss_pred ceEEEEEEeeC-----CCcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEc-C
Q 002364 30 AVVNVGALFTL-----DSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIG-P 103 (930)
Q Consensus 30 ~~i~IG~i~~~-----s~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiG-p 103 (930)
.+-+||+++|. +.++-.....+++-+.++ .|+++.+...+. . .........+..++|.+||- |
T Consensus 5 ~s~~Igvi~~~~~~~~~~~~~~~~~~gi~~~a~~--------~g~~~~~~~~~~-~--~~~~~~~~~l~~~~vdGiIi~~ 73 (294)
T 3qk7_A 5 RTDAIALAYPSRPRVLNNSTFLEMISWIGIELGK--------RGLDLLLIPDEP-G--EKYQSLIHLVETRRVDALIVAH 73 (294)
T ss_dssp CCCEEEEEEESCSGGGSCHHHHHHHHHHHHHHHH--------TTCEEEEEEECT-T--CCCHHHHHHHHHTCCSEEEECS
T ss_pred ccceEEEEecCCCccccChhHHHHHHHHHHHHHH--------CCCEEEEEeCCC-h--hhHHHHHHHHHcCCCCEEEEeC
Confidence 45689999983 233333445555555544 267776665543 1 11222233444557888764 3
Q ss_pred CChhHHHHHHHhhccCCCcEEecccCCCCCCCCCCCceEeecCCchHHHHHHHHHHHhcCccEEEEEEEcCc--cccchH
Q 002364 104 QCSTVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNE--YGRNGV 181 (930)
Q Consensus 104 ~~s~~~~~v~~~~~~~~iP~is~~a~~~~l~~~~~p~~~r~~p~~~~~~~ai~~~l~~~~w~~v~ii~~d~~--~g~~~~ 181 (930)
..... .....+...++|+|......+ . +.+-.+..++..-+..++++|...|-++++++..... ..+.-.
T Consensus 74 ~~~~~--~~~~~l~~~~iPvV~~~~~~~---~---~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~ 145 (294)
T 3qk7_A 74 TQPED--FRLQYLQKQNFPFLALGRSHL---P---KPYAWFDFDNHAGASLAVKRLLELGHQRIAFVSTDARISYVDQRL 145 (294)
T ss_dssp CCSSC--HHHHHHHHTTCCEEEESCCCC---S---SCCEEEEECHHHHHHHHHHHHHHTTCCCEEEEEESSCCHHHHHHH
T ss_pred CCCCh--HHHHHHHhCCCCEEEECCCCC---C---CCCCEEEcChHHHHHHHHHHHHHCCCceEEEEeCCcccchHHHHH
Confidence 32222 345566778999998754321 1 2234566777888888999998899999999986533 344557
Q ss_pred HHHHHHHhhcceEEEEEEecCCCCCCChhHHHHHHHHHHhC--CceEEEEEcChhhHHHHHHHHHHcCcccCC-eEEEEe
Q 002364 182 SALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALM--ESRVIVLHVSPSLGFQVFSVAKYLGMMGNG-YVWIAT 258 (930)
Q Consensus 182 ~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viil~~~~~~~~~~~~~a~~~g~~~~~-~~~i~~ 258 (930)
+.+.+++++.|+.+.....+... .+.......+.++.+. .+++|+ +.+...+..++++++++|+..++ ...++-
T Consensus 146 ~Gf~~al~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~-~~nd~~A~g~~~al~~~G~~vP~di~vig~ 222 (294)
T 3qk7_A 146 QGYVQTMSEAGLMPLAGYLQKAD--PTRPGGYLAASRLLALEVPPTAII-TDCNMLGDGVASALDKAGLLGGEGISLIAY 222 (294)
T ss_dssp HHHHHHHHTTTCCCCTTCEEEEC--SSHHHHHHHHHHHHHSSSCCSEEE-ESSHHHHHHHHHHHHHTTCSSTTSCEEEEE
T ss_pred HHHHHHHHHCCCCCChhHeecCC--CCHHHHHHHHHHHHcCCCCCcEEE-ECCHHHHHHHHHHHHHcCCCCCCceEEEee
Confidence 88999999998764210001111 2244444455555443 466655 45667788899999999987554 444444
Q ss_pred C
Q 002364 259 D 259 (930)
Q Consensus 259 ~ 259 (930)
|
T Consensus 223 D 223 (294)
T 3qk7_A 223 D 223 (294)
T ss_dssp T
T ss_pred c
Confidence 3
No 130
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=97.62 E-value=0.00037 Score=73.25 Aligned_cols=205 Identities=11% Similarity=0.049 Sum_probs=124.5
Q ss_pred CCceEEEEEEeeC--CCcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCC
Q 002364 28 RPAVVNVGALFTL--DSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQC 105 (930)
Q Consensus 28 ~~~~i~IG~i~~~--s~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~ 105 (930)
...+-+||+++|. +.++-.....+++-+.++. |+++.+...+...+.. .+....+..++|.+||-...
T Consensus 8 ~~~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~~~~~~~~~~~--~~~~~~l~~~~vdgiIi~~~ 77 (289)
T 3g85_A 8 SQSKPTIALYWSSDISVNIISRFLRGLQSKLAKQ--------NYNYNVVICPYKTDCL--HLEKGISKENSFDAAIIANI 77 (289)
T ss_dssp ---CCEEEEEEETTSCGGGHHHHHHHHHHHHHHT--------TTCSEEEEEEECTTCG--GGCGGGSTTTCCSEEEESSC
T ss_pred cCCCceEEEEeccccchHHHHHHHHHHHHHHHHc--------CCeEEEEecCCCchhH--HHHHHHHhccCCCEEEEecC
Confidence 3456789999993 3444445566666666552 4444444332222111 12233445558888875443
Q ss_pred hhHHHHHHHhhccCCCcEEecccCCCCCCCCCCCceEeecCCchHHHHHHHHHHHhcCccEEEEEEEcCc--cccchHHH
Q 002364 106 STVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNE--YGRNGVSA 183 (930)
Q Consensus 106 s~~~~~v~~~~~~~~iP~is~~a~~~~l~~~~~p~~~r~~p~~~~~~~ai~~~l~~~~w~~v~ii~~d~~--~g~~~~~~ 183 (930)
......+... ...++|+|......+ .+-.+..++..-+..++++|...|-++++++..+.. ..+.-.+.
T Consensus 78 ~~~~~~~~~~-~~~~iPvV~~~~~~~--------~~~~V~~D~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~g 148 (289)
T 3g85_A 78 SNYDLEYLNK-ASLTLPIILFNRLSN--------KYSSVNVDNYKMGEKASLLFAKKRYKSAAAILTESLNDAMDNRNKG 148 (289)
T ss_dssp CHHHHHHHHH-CCCSSCEEEESCCCS--------SSEEEEECHHHHHHHHHHHHHHTTCCBCEEEECCCSSHHHHHHHHH
T ss_pred CcccHHHHHh-ccCCCCEEEECCCCC--------CCCEEEeCHHHHHHHHHHHHHHcCCCEEEEEeCCcccccHHHHHHH
Confidence 3333333333 468999998764322 234566777888899999998899999999985432 34556788
Q ss_pred HHHHHhhcceEEEEEEecCCCCCCChhHHHHHHHHHHhC--CceEEEEEcChhhHHHHHHHHHHcCcccCCeE
Q 002364 184 LNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALM--ESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYV 254 (930)
Q Consensus 184 l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viil~~~~~~~~~~~~~a~~~g~~~~~~~ 254 (930)
+.+++++.|+.+.....+... .+..+....+.++.+. ++++|+ +.+...+..++++++++|+..++-+
T Consensus 149 f~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di 218 (289)
T 3g85_A 149 FIETCHKNGIKISENHIIAAE--NSIHGGVDAAKKLMKLKNTPKALF-CNSDSIALGVISVLNKRQISIPDDI 218 (289)
T ss_dssp HHHHHHHTTCBCCGGGEEECC--SSHHHHHHHHHHHTTSSSCCSEEE-ESSHHHHHHHHHHHHHTTCCTTTTC
T ss_pred HHHHHHHcCCCCChhheeccC--CCHHHHHHHHHHHHcCCCCCcEEE-EcCCHHHHHHHHHHHHcCCCCCCce
Confidence 999999998764311111111 2345555556666554 456655 5667778889999999998655433
No 131
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=97.61 E-value=0.00075 Score=71.09 Aligned_cols=207 Identities=14% Similarity=0.076 Sum_probs=129.5
Q ss_pred eEEEEEEeeCC-CcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEc-CCChh-
Q 002364 31 VVNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIG-PQCST- 107 (930)
Q Consensus 31 ~i~IG~i~~~s-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiG-p~~s~- 107 (930)
.-+||+++|.. .++-.....+++-+.++. |+++. +.++..++....+....++.+++.+||- |..+.
T Consensus 15 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~ 84 (298)
T 3tb6_A 15 NKTIGVLTTYISDYIFPSIIRGIESYLSEQ--------GYSML--LTSTNNNPDNERRGLENLLSQHIDGLIVEPTKSAL 84 (298)
T ss_dssp CCEEEEEESCSSSTTHHHHHHHHHHHHHHT--------TCEEE--EEECTTCHHHHHHHHHHHHHTCCSEEEECCSSTTS
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHHHC--------CCEEE--EEeCCCChHHHHHHHHHHHHCCCCEEEEecccccc
Confidence 36899999964 344445566666666552 55554 4566667777777777888888888874 33221
Q ss_pred --HHHHHHHhhccCCCcEEecccCCCCCCCCCCCceEeecCCchHHHHHHHHHHHhcCccEEEEEEEcCc-cccchHHHH
Q 002364 108 --VAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNE-YGRNGVSAL 184 (930)
Q Consensus 108 --~~~~v~~~~~~~~iP~is~~a~~~~l~~~~~p~~~r~~p~~~~~~~ai~~~l~~~~w~~v~ii~~d~~-~g~~~~~~l 184 (930)
........+...++|+|......+.. . +..+..++...+..++++|...|-++++++..... ....-.+.+
T Consensus 85 ~~~~~~~~~~~~~~~iPvV~~~~~~~~~---~---~~~V~~d~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~R~~gf 158 (298)
T 3tb6_A 85 QTPNIGYYLNLEKNGIPFAMINASYAEL---A---APSFTLDDVKGGMMAAEHLLSLGHTHMMGIFKADDTQGVKRMNGF 158 (298)
T ss_dssp CCTTHHHHHHHHHTTCCEEEESSCCTTC---S---SCEEEECHHHHHHHHHHHHHHTTCCSEEEEEESSSHHHHHHHHHH
T ss_pred cCCcHHHHHHHHhcCCCEEEEecCcCCC---C---CCEEEeCcHHHHHHHHHHHHHCCCCcEEEEcCCCCccHHHHHHHH
Confidence 33455566777899999875433221 1 23456677888889999998889999999985433 344557888
Q ss_pred HHHHhhcceEEEEE--EecCCCCCCChhHHHHHHHHHHhC--C--ceEEEEEcChhhHHHHHHHHHHcCcccCCeEEE
Q 002364 185 NDKLAERRCRISYK--SGIPPESGVNTGYVMDLLVKVALM--E--SRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWI 256 (930)
Q Consensus 185 ~~~l~~~g~~v~~~--~~~~~~~~~~~~~~~~~l~~l~~~--~--~~viil~~~~~~~~~~~~~a~~~g~~~~~~~~i 256 (930)
.+++++.|+.+... ...... .........+.++.+. + +++|+ +.+...+..+++++++.|+..++-+-+
T Consensus 159 ~~~l~~~g~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di~v 233 (298)
T 3tb6_A 159 IQAHRERELFPSPDMIVTFTTE--EKESKLLEKVKATLEKNSKHMPTAIL-CYNDEIALKVIDMLREMDLKVPEDMSI 233 (298)
T ss_dssp HHHHHHTTCCCCGGGEEEECHH--HHTTHHHHHHHHHHHHTTTSCCSEEE-CSSHHHHHHHHHHHHHTTCCTTTTCEE
T ss_pred HHHHHHcCCCCCcceEEEeccc--chhhhHHHHHHHHHhcCCCCCCeEEE-EeCcHHHHHHHHHHHHcCCCCCCceEE
Confidence 99999988764211 111111 0011113334444332 2 56655 456677888999999999865544433
No 132
>3ksx_A Nitrate transport protein; SSUA, alkanesulfonate-binding protein, periplasmic-binding P transport protein; HET: MPO; 1.70A {Xanthomonas axonopodis PV} PDB: 3e4r_A* 3ksj_A*
Probab=97.60 E-value=0.00069 Score=72.51 Aligned_cols=93 Identities=22% Similarity=0.255 Sum_probs=58.5
Q ss_pred CCCCChHHhhhCCCCeEEEeCchHHHHHH---Hhhcccccc--ceecCCHHHHHHHHhcCCCCCceEEEEecchhHHHHH
Q 002364 680 SPINGIESLRKSDDPIGYQEGSFAEYYLS---QELNISKSR--LVALRTPEDYAKALKDGPGKGGVAAVVDERPYVELFL 754 (930)
Q Consensus 680 ~~i~s~~dL~~~~~~v~~~~~s~~~~~l~---~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~g~~~a~i~~~~~~~~~~ 754 (930)
.+|++++||. |++|++..++.....+. +..+++... ++.. +..+...+|.+ |++|+++...++.....
T Consensus 121 s~I~s~~DLk--Gk~i~v~~gs~~~~~~~~~l~~~Gl~~~~v~~v~~-~~~~~~~al~~----G~vDa~~~~~p~~~~~~ 193 (324)
T 3ksx_A 121 SALRTVADLK--GKRIAFQKGSSAHNLLLRVLAKSGLSMRDITPLYL-SPANARAAFAA----GQVDAWAIWDPWYSALT 193 (324)
T ss_dssp CSCCSGGGGT--TCEEEECTTSHHHHHHHHHHHHTTCCGGGSEEEEC-CHHHHHHHHHT----TCCSEEEEETTHHHHHH
T ss_pred CCCCCHHHhC--CCEEEecCCChHHHHHHHHHHHcCCCHHHeEEEeC-CHHHHHHHHHc----CCCCEEEEccHHHHHHH
Confidence 4799999997 99999987775444332 233443333 3333 67889999999 89999888878776665
Q ss_pred hcC-ccEEEeCccccccceeeeeCCC
Q 002364 755 SSQ-CSFRIVGQEFTKSGWGFAFPRD 779 (930)
Q Consensus 755 ~~~-~~l~~~~~~~~~~~~~~~~~k~ 779 (930)
.+. .+.......+......++++++
T Consensus 194 ~~~~~~~l~~~~~~~~~~~~~~~~~~ 219 (324)
T 3ksx_A 194 LDGSARLLANGEGLGLTGGFFLSSRR 219 (324)
T ss_dssp HTTSEEEEEESTTSCCCCEEEEEEHH
T ss_pred hcCCcEEEecccccCCCccEEEECHH
Confidence 543 2333333333333344555443
No 133
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=97.60 E-value=0.0017 Score=70.25 Aligned_cols=208 Identities=11% Similarity=0.012 Sum_probs=124.4
Q ss_pred ceEEEEEEeeCC-CcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCChhH
Q 002364 30 AVVNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCSTV 108 (930)
Q Consensus 30 ~~i~IG~i~~~s-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~s~~ 108 (930)
.+-+||++.|.. .++......+++.+.++ .|+++.+ .++..++.........++.++|.+||-......
T Consensus 65 ~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~--------~g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~ 134 (348)
T 3bil_A 65 RSNTIGVIVPSLINHYFAAMVTEIQSTASK--------AGLATII--TNSNEDATTMSGSLEFLTSHGVDGIICVPNEEC 134 (348)
T ss_dssp ---CEEEEESCSSSHHHHHHHHHHHHHHHH--------TTCCEEE--EECTTCHHHHHHHHHHHHHTTCSCEEECCCGGG
T ss_pred CCCEEEEEeCCCCCcHHHHHHHHHHHHHHH--------cCCEEEE--EeCCCCHHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence 457899999853 33334455666655554 2555544 455566666556666777778888875433322
Q ss_pred HHHHHHhhccCCCcEEecccCCCCCCCCCCCceEeecCCchHHHHHHHHHHHhcCccEEEEEEEcC--ccccchHHHHHH
Q 002364 109 AHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDN--EYGRNGVSALND 186 (930)
Q Consensus 109 ~~~v~~~~~~~~iP~is~~a~~~~l~~~~~p~~~r~~p~~~~~~~ai~~~l~~~~w~~v~ii~~d~--~~g~~~~~~l~~ 186 (930)
. .....+...++|+|......+. . +.+..+..++..-+..++++|...|.+++++|..+. .....-.+.+.+
T Consensus 135 ~-~~~~~l~~~~iPvV~i~~~~~~--~---~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~ 208 (348)
T 3bil_A 135 A-NQLEDLQKQGMPVVLVDRELPG--D---STIPTATSNPQPGIAAAVELLAHNNALPIGYLSGPMDTSTGRERLEDFKA 208 (348)
T ss_dssp H-HHHHHHHHC-CCEEEESSCCSC--C----CCCEEEEECHHHHHHHHHHHHHTTCCSEEEECCCTTSHHHHHHHHHHHH
T ss_pred h-HHHHHHHhCCCCEEEEcccCCC--C---CCCCEEEeChHHHHHHHHHHHHHCCCCeEEEEeCCCCCccHHHHHHHHHH
Confidence 2 3344455689999987543221 0 122345566677788888888888999999997542 234455788999
Q ss_pred HHhhcceEEEEEEecCCCCCCChhHHHHHHHHHHhCC-ceEEEEEcChhhHHHHHHHHHHcCcccCC-eEEEEeC
Q 002364 187 KLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALME-SRVIVLHVSPSLGFQVFSVAKYLGMMGNG-YVWIATD 259 (930)
Q Consensus 187 ~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~-~~viil~~~~~~~~~~~~~a~~~g~~~~~-~~~i~~~ 259 (930)
++++.|+..... +... .+..+-...+.++.+.. + .|++.+...+..+++++++.|+..++ ...++-|
T Consensus 209 al~~~g~~~~~v--~~~~--~~~~~~~~~~~~ll~~~~~--ai~~~nD~~A~g~~~al~~~G~~vP~disvvG~D 277 (348)
T 3bil_A 209 ACANSKIGEQLV--FLGG--YEQSVGFEGATKLLDQGAK--TLFAGDSMMTIGVIEACHKAGLVIGKDVSVIGFD 277 (348)
T ss_dssp HHHHTTCCCCEE--ECCC--SSHHHHHHHHHHHHHTTCS--EEEESSHHHHHHHHHHHHHTTCCBTTTBEEEEES
T ss_pred HHHHcCcCccEE--EcCC--CCHHHHHHHHHHHHcCCCC--EEEEcChHHHHHHHHHHHHcCCCCCCCeEEEEeC
Confidence 999988632111 1111 22344444555554433 4 45566777788899999999986544 3344433
No 134
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=97.59 E-value=0.00096 Score=70.59 Aligned_cols=208 Identities=11% Similarity=0.011 Sum_probs=128.0
Q ss_pred CceEEEEEEeeCC-CcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCChh
Q 002364 29 PAVVNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCST 107 (930)
Q Consensus 29 ~~~i~IG~i~~~s-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~s~ 107 (930)
..+-+||+++|.. .++-.....+++-+.++. |+++. +.++..++....+....++.++|.+||-.....
T Consensus 13 ~~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~ 82 (303)
T 3kke_A 13 SRSGTIGLIVPDVNNAVFADMFSGVQMAASGH--------STDVL--LGQIDAPPRGTQQLSRLVSEGRVDGVLLQRRED 82 (303)
T ss_dssp ----CEEEEESCTTSTTHHHHHHHHHHHHHHT--------TCCEE--EEECCSTTHHHHHHHHHHHSCSSSEEEECCCTT
T ss_pred CCCCEEEEEeCCCcChHHHHHHHHHHHHHHHC--------CCEEE--EEeCCCChHHHHHHHHHHHhCCCcEEEEecCCC
Confidence 4467899999864 444455666666666552 45444 455666666666666677777888887533322
Q ss_pred HHH-HHHHhhccCCCcEEecccCCCCCCCCCCCceEeecCCchHHHHHHHHHHHhcCccEEEEEEEcC--ccccchHHHH
Q 002364 108 VAH-IVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDN--EYGRNGVSAL 184 (930)
Q Consensus 108 ~~~-~v~~~~~~~~iP~is~~a~~~~l~~~~~p~~~r~~p~~~~~~~ai~~~l~~~~w~~v~ii~~d~--~~g~~~~~~l 184 (930)
... .+.. +.+ ++|+|......+. . +-.+..++..-+..++++|...|-++++++.... .....-.+.+
T Consensus 83 ~~~~~~~~-l~~-~iPvV~i~~~~~~----~---~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf 153 (303)
T 3kke_A 83 FDDDMLAA-VLE-GVPAVTINSRVPG----R---VGSVILDDQKGGGIATEHLITLGHSRIAFISGTAIHDTAQRRKEGY 153 (303)
T ss_dssp CCHHHHHH-HHT-TSCEEEESCCCTT----C---CCEEEECHHHHHHHHHHHHHHTTCCSEEEEESCSSCHHHHHHHHHH
T ss_pred CcHHHHHH-HhC-CCCEEEECCcCCC----C---CCEEEECcHHHHHHHHHHHHHCCCCeEEEEeCCCcCccHHHHHHHH
Confidence 222 3344 444 9999987554332 2 2345567777888888998889999999998543 3345567889
Q ss_pred HHHHhhcceEEEEEEecCCCCCCChhHHHHHHHHH-----HhC--CceEEEEEcChhhHHHHHHHHHHcCcccCC-eEEE
Q 002364 185 NDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKV-----ALM--ESRVIVLHVSPSLGFQVFSVAKYLGMMGNG-YVWI 256 (930)
Q Consensus 185 ~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l-----~~~--~~~viil~~~~~~~~~~~~~a~~~g~~~~~-~~~i 256 (930)
++++++.|+.+......... .+.......+.++ .+. .+++|+ +.+...+..+++++++.|+..++ ...+
T Consensus 154 ~~al~~~g~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~l~~~~~~~ai~-~~nd~~A~g~~~al~~~G~~vP~di~vi 230 (303)
T 3kke_A 154 LETLASAGLRSEAAWVVDAG--WEADAGSAALNTLYRGANLGKPDGPTAVV-VASVNAAVGALSTALRLGLRVPEDLSIV 230 (303)
T ss_dssp HHHHHHTTCCCCGGGEEECC--SSHHHHHHHHHHHHHHHCTTSTTSCSEEE-ESSHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred HHHHHHcCCCCCcceEEecC--CChHHHHHHHHHhcchhhhcCCCCCcEEE-ECCHHHHHHHHHHHHHcCCCCCCceEEE
Confidence 99999998764311111111 2244444556666 443 456654 45667788899999999986543 3444
Q ss_pred Ee
Q 002364 257 AT 258 (930)
Q Consensus 257 ~~ 258 (930)
+-
T Consensus 231 g~ 232 (303)
T 3kke_A 231 GI 232 (303)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 135
>3un6_A Hypothetical protein saouhsc_00137; structural genomics, center for structural genomics of infec diseases, csgid; 2.01A {Staphylococcus aureus subsp}
Probab=97.57 E-value=0.00013 Score=78.90 Aligned_cols=122 Identities=12% Similarity=0.163 Sum_probs=75.0
Q ss_pred CCCCChHHh-hhCCCCeEEEeCchHHHHH----HHhhccccc--cceecCCHHHHHHHHhcCCCCCceEEEEecchhHHH
Q 002364 680 SPINGIESL-RKSDDPIGYQEGSFAEYYL----SQELNISKS--RLVALRTPEDYAKALKDGPGKGGVAAVVDERPYVEL 752 (930)
Q Consensus 680 ~~i~s~~dL-~~~~~~v~~~~~s~~~~~l----~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~g~~~a~i~~~~~~~~ 752 (930)
.+|++++|| . |++||+..++....++ .+..++... +++.+ +..+...++.+ |++||++...++...
T Consensus 143 s~I~s~~DL~k--Gk~i~v~~~~s~~~~~~~~~l~~~Gl~~~dv~~~~~-~~~~~~~al~~----G~vDa~~~~~p~~~~ 215 (341)
T 3un6_A 143 MHLNEFNNNGD--DYHFGIPHRYSTHYLLLEELRKQLKIKPGHFSYHEM-SPAEMPAALSE----HRITGYSVAEPFGAL 215 (341)
T ss_dssp CCGGGCCSSSS--CEEEEESCSSSHHHHHHHHHHHHTTCCTTSEEEEEC-CGGGHHHHHHT----TSCSEEEEETTHHHH
T ss_pred CCCCCHHHhCC--CCEEEECCCCCHHHHHHHHHHHHcCCCHHHeEEEEc-ChHHHHHHHHc----CCCCEEEecCCHHHH
Confidence 468899999 6 8899998754333322 233444332 34444 56788899999 899999998888776
Q ss_pred HHhcCc-cEEEeCccc-ccc-ceeeeeCCC----Cc-----chHHHHHHHHhhhhccchHHHHHHhcc
Q 002364 753 FLSSQC-SFRIVGQEF-TKS-GWGFAFPRD----SP-----LAVDLSSAILELAENGDLQRIHDKWLM 808 (930)
Q Consensus 753 ~~~~~~-~l~~~~~~~-~~~-~~~~~~~k~----sp-----l~~~i~~~i~~l~e~G~~~~~~~~w~~ 808 (930)
...+.. +.......+ ... ...++++++ .| +.+.+++++.++.+++.-.++..+|++
T Consensus 216 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~~~a~~~a~~~~~~~~~~~~~~~~~~~ 283 (341)
T 3un6_A 216 GEKLGKGKTLKHGDDVIPDAYCCVLVLRGELLDQHKDVAQAFVQDYKKSGFKMNDRKQSVDIMTHHFK 283 (341)
T ss_dssp HHHSSCCEEEEEGGGTSTTCCCEEEEECHHHHHHCHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHSS
T ss_pred HHhcCCeEEEEeccccCCCCceEEEEECHHHHHHCHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHhC
Confidence 665543 333322222 222 245666554 44 556666666667776643366667765
No 136
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=97.51 E-value=0.0049 Score=66.74 Aligned_cols=205 Identities=11% Similarity=0.047 Sum_probs=127.2
Q ss_pred ceEEEEEEeeCC-CcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCChhH
Q 002364 30 AVVNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCSTV 108 (930)
Q Consensus 30 ~~i~IG~i~~~s-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~s~~ 108 (930)
.+-.||+++|.. .++-.....+++-+.++ .|+++. +.++..++.........++.++|.++|-......
T Consensus 69 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~--------~g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~~~~ 138 (355)
T 3e3m_A 69 RSGFVGLLLPSLNNLHFAQTAQSLTDVLEQ--------GGLQLL--LGYTAYSPEREEQLVETMLRRRPEAMVLSYDGHT 138 (355)
T ss_dssp --CEEEEEESCSBCHHHHHHHHHHHHHHHH--------TTCEEE--EEECTTCHHHHHHHHHHHHHTCCSEEEEECSCCC
T ss_pred CCCEEEEEeCCCCchHHHHHHHHHHHHHHH--------CCCEEE--EEeCCCChHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence 356799999864 22223444555544444 256554 4566667766666667777778877764222222
Q ss_pred HHHHHHhhccCCCcEEecccCCCCCCCCCCCceEeecCCchHHHHHHHHHHHhcCccEEEEEEEcCcc---ccchHHHHH
Q 002364 109 AHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEY---GRNGVSALN 185 (930)
Q Consensus 109 ~~~v~~~~~~~~iP~is~~a~~~~l~~~~~p~~~r~~p~~~~~~~ai~~~l~~~~w~~v~ii~~d~~~---g~~~~~~l~ 185 (930)
......+...++|+|...... . .+....+..++..-+..++++|...|-++++++..+... ...-.+.+.
T Consensus 139 -~~~~~~l~~~~iPvV~i~~~~---~---~~~~~~V~~D~~~~~~~a~~~L~~~G~r~I~~i~~~~~~~~~~~~R~~Gf~ 211 (355)
T 3e3m_A 139 -EQTIRLLQRASIPIVEIWEKP---A---HPIGHTVGFSNERAAYDMTNALLARGFRKIVFLGEKDDDWTRGAARRAGFK 211 (355)
T ss_dssp -HHHHHHHHHCCSCEEEESSCC---S---SCSSEEEECCHHHHHHHHHHHHHHTTCCSEEEEEESSCTTSHHHHHHHHHH
T ss_pred -HHHHHHHHhCCCCEEEECCcc---C---CCCCCEEEeChHHHHHHHHHHHHHCCCCeEEEEccCcccChhHHHHHHHHH
Confidence 234555677899999763221 1 122345667778888888999988999999999865332 355678899
Q ss_pred HHHhhcceEEEEEEec-CCCCCCChhHHHHHHHHHHh--CCceEEEEEcChhhHHHHHHHHHHcCcccCCeE
Q 002364 186 DKLAERRCRISYKSGI-PPESGVNTGYVMDLLVKVAL--MESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYV 254 (930)
Q Consensus 186 ~~l~~~g~~v~~~~~~-~~~~~~~~~~~~~~l~~l~~--~~~~viil~~~~~~~~~~~~~a~~~g~~~~~~~ 254 (930)
+++++.|+.+.....+ ... .+..+-...+.++.+ ..+++|+ +.+...+..++++++++|+..++-+
T Consensus 212 ~al~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~ll~~~~~~~ai~-~~nD~~A~g~~~al~~~G~~vP~di 280 (355)
T 3e3m_A 212 RAMREAGLNPDQEIRLGAPP--LSIEDGVAAAELILQEYPDTDCIF-CVSDMPAFGLLSRLKSIGVAVPEQV 280 (355)
T ss_dssp HHHHHTTSCSCCEEEESCSS--CCHHHHHHHHHHHHHHCTTCCEEE-ESSHHHHHHHHHHHHHHTCCTTTTC
T ss_pred HHHHHCCcCCCccEEEecCC--CCHHHHHHHHHHHHcCCCCCcEEE-ECChHHHHHHHHHHHHcCCCCCCce
Confidence 9999998764421112 111 223444444555433 3566655 4666778889999999998655433
No 137
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=97.50 E-value=0.0044 Score=64.39 Aligned_cols=199 Identities=8% Similarity=-0.061 Sum_probs=118.9
Q ss_pred CceEEEEEEeeCC-CcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCChh
Q 002364 29 PAVVNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCST 107 (930)
Q Consensus 29 ~~~i~IG~i~~~s-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~s~ 107 (930)
..+.+||+++|.. .++-.....+++.+.++ .|+++.+.. +..++.... ++ +|.+||-.....
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~--------~g~~~~~~~--~~~~~~~~~----~~---~vdgiI~~~~~~ 68 (277)
T 3cs3_A 6 RQTNIIGVYLADYGGSFYGELLEGIKKGLAL--------FDYEMIVCS--GKKSHLFIP----EK---MVDGAIILDWTF 68 (277)
T ss_dssp CCCCEEEEEECSSCTTTHHHHHHHHHHHHHT--------TTCEEEEEE--STTTTTCCC----TT---TCSEEEEECTTS
T ss_pred cCCcEEEEEecCCCChhHHHHHHHHHHHHHH--------CCCeEEEEe--CCCCHHHHh----hc---cccEEEEecCCC
Confidence 3457899999853 33334455555555543 256665543 333221111 11 677665422221
Q ss_pred HHHHHHHhhccCCCcEEecccCCCCCCCCCCCceEeecCCchHHHHHHHHHHHhcCccEEEEEEEcCc--cccchHHHHH
Q 002364 108 VAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNE--YGRNGVSALN 185 (930)
Q Consensus 108 ~~~~v~~~~~~~~iP~is~~a~~~~l~~~~~p~~~r~~p~~~~~~~ai~~~l~~~~w~~v~ii~~d~~--~g~~~~~~l~ 185 (930)
... ....+...++|+|......+ + +.+..+..++...+..++++|...|-++++++..+.. ....-.+.++
T Consensus 69 ~~~-~~~~l~~~~iPvV~~~~~~~---~---~~~~~V~~D~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~ 141 (277)
T 3cs3_A 69 PTK-EIEKFAERGHSIVVLDRTTE---H---RNIRQVLLDNRGGATQAIEQFVNVGSKKVLLLSGPEKGYDSQERLAVST 141 (277)
T ss_dssp CHH-HHHHHHHTTCEEEESSSCCC---S---TTEEEEEECHHHHHHHHHHHHHHTTCSCEEEEECCTTSHHHHHHHHHHH
T ss_pred CHH-HHHHHHhcCCCEEEEecCCC---C---CCCCEEEeCcHHHHHHHHHHHHHcCCceEEEEeCCccCccHHHHHHHHH
Confidence 222 23445568999998754322 1 2345566777777888889888889999999985432 3445578889
Q ss_pred HHHhhcceEEEEEEecCCCCCCChhHHHHHHHHHHhC---CceEEEEEcChhhHHHHHHHHHHcCcccCCeEEEE
Q 002364 186 DKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALM---ESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIA 257 (930)
Q Consensus 186 ~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~viil~~~~~~~~~~~~~a~~~g~~~~~~~~i~ 257 (930)
+++++.|+.+. .. ... .+..+....+.++.+. ++++|+ +.+...+..+++++++.|+..++-+.+.
T Consensus 142 ~~l~~~g~~~~-~~--~~~--~~~~~~~~~~~~~l~~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di~vv 210 (277)
T 3cs3_A 142 RELTRFGIPYE-II--QGD--FTEPSGYAAAKKILSQPQTEPVDVF-AFNDEMAIGVYKYVAETNYQMGKDIRII 210 (277)
T ss_dssp HHHHHTTCCEE-EE--ECC--SSHHHHHHHHHHHTTSCCCSSEEEE-ESSHHHHHHHHHHHTTSSCCBTTTEEEE
T ss_pred HHHHHcCCCee-EE--eCC--CChhHHHHHHHHHHhcCCCCCcEEE-EcChHHHHHHHHHHHHcCCCCCCcEEEE
Confidence 99999997765 21 111 2244445556666544 456654 4566778889999999998655444443
No 138
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=97.46 E-value=0.0015 Score=68.01 Aligned_cols=199 Identities=10% Similarity=0.032 Sum_probs=117.3
Q ss_pred CceEEEEEEeeCC-CcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCChh
Q 002364 29 PAVVNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCST 107 (930)
Q Consensus 29 ~~~i~IG~i~~~s-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~s~ 107 (930)
..+-+||+++|.. .++-.....+++-+.++. |+++. +.++..++.........++.+++.+||-...+
T Consensus 6 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~--------g~~~~--~~~~~~~~~~~~~~~~~l~~~~~dgiIi~~~~- 74 (277)
T 3e61_A 6 RKSKLIGLLLPDMSNPFFTLIARGVEDVALAH--------GYQVL--IGNSDNDIKKAQGYLATFVSHNCTGMISTAFN- 74 (277)
T ss_dssp ----CEEEEESCTTSHHHHHHHHHHHHHHHHT--------TCCEE--EEECTTCHHHHHHHHHHHHHTTCSEEEECGGG-
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHHHHC--------CCEEE--EEeCCCCHHHHHHHHHHHHhCCCCEEEEecCC-
Confidence 3467899999863 333344555555555442 45444 46666677766667777777888888753322
Q ss_pred HHHHHHH-hhccCCCcEEecccCCCCCCCCCCCceEeecCCchHHHHHHHHHHHhcCccEEEEEEEcC--ccccchHHHH
Q 002364 108 VAHIVSY-VSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDN--EYGRNGVSAL 184 (930)
Q Consensus 108 ~~~~v~~-~~~~~~iP~is~~a~~~~l~~~~~p~~~r~~p~~~~~~~ai~~~l~~~~w~~v~ii~~d~--~~g~~~~~~l 184 (930)
..... .+...++|+|......+.. . .+..++...+..++++|...|-++++++..+. .....-.+.+
T Consensus 75 --~~~~~~~l~~~~iPvV~~~~~~~~~-----~---~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf 144 (277)
T 3e61_A 75 --ENIIENTLTDHHIPFVFIDRINNEH-----N---GISTNHFKGGQLQAEVVRKGKGKNVLIVHENLLIDAFHQRVQGI 144 (277)
T ss_dssp --HHHHHHHHHHC-CCEEEGGGCC-----------------HHHHHHHHHHHHHHTTCCSEEEEESCTTSHHHHHHHHHH
T ss_pred --hHHHHHHHHcCCCCEEEEeccCCCC-----C---eEEechHHHHHHHHHHHHHCCCCeEEEEeCCCCCccHHHHHHHH
Confidence 22344 6667899999876543211 1 56677778888899998888999999998543 3444567889
Q ss_pred HHHHhhcceEEEEEEecCCCCCCChhHHHHHHHHHHh-CCceEEEEEcChhhHHHHHHHHHHcCcccCCeEEE
Q 002364 185 NDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVAL-MESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWI 256 (930)
Q Consensus 185 ~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~-~~~~viil~~~~~~~~~~~~~a~~~g~~~~~~~~i 256 (930)
.+++++.|+.+.. .... . .+..+.... +.. .++++|+. .+...+..++++++++|+..++-+-+
T Consensus 145 ~~~l~~~~~~~~~-~~~~-~--~~~~~~~~~---l~~~~~~~ai~~-~~d~~a~g~~~al~~~g~~vP~di~v 209 (277)
T 3e61_A 145 KYILDQQRIDYKM-LEAT-L--LDNDKKFID---LIKELSIDSIIC-SNDLLAINVLGIVQRYHFKVPAEIQI 209 (277)
T ss_dssp HHHHHC---CEEE-EEGG-G--GGSHHHHHH---HHHHHTCCEEEE-SSHHHHHHHHHHHHHTTCCTTTTCEE
T ss_pred HHHHHHcCCCccc-eecC-C--CCHHHHHHH---hhcCCCCCEEEE-CCcHHHHHHHHHHHHcCCCCCCceEE
Confidence 9999999877654 2111 1 112222222 332 45676654 46677888999999999865443333
No 139
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=97.46 E-value=0.012 Score=61.38 Aligned_cols=211 Identities=11% Similarity=0.030 Sum_probs=124.0
Q ss_pred EEEEEeeCC-CcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEec--CCCChHHHHHHHHHHHhcCcEEEEc-CCChhH
Q 002364 33 NVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQS--SNCSGFIGMVEALRFMETDIVAIIG-PQCSTV 108 (930)
Q Consensus 33 ~IG~i~~~s-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~l~~~D--~~~~~~~a~~~a~~li~~~v~aiiG-p~~s~~ 108 (930)
+||++.|.. .++-.....+++.+.++. |+++. +.+ +..++..-......++.++|.++|- |.....
T Consensus 3 ~Igvi~~~~~~~f~~~~~~gi~~~a~~~--------g~~~~--~~~~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~~~~ 72 (288)
T 1gud_A 3 EYAVVLKTLSNPFWVDMKKGIEDEAKTL--------GVSVD--IFASPSEGDFQSQLQLFEDLSNKNYKGIAFAPLSSVN 72 (288)
T ss_dssp EEEEEESCSSSHHHHHHHHHHHHHHHHH--------TCCEE--EEECSSTTCHHHHHHHHHHHHTSSEEEEEECCSSSST
T ss_pred EEEEEeCCCCchHHHHHHHHHHHHHHHc--------CCEEE--EeCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChHH
Confidence 689998853 333334556666555553 34443 345 5666666556666777778998763 433332
Q ss_pred HHHHHHhhccCCCcEEecccCCCCCC-C-CCCCceEeecCCchHHHHHHHHHHHhc-C--ccEEEEEEEcCcc--ccchH
Q 002364 109 AHIVSYVSNELQVPLLSFGVTDPTLS-S-LQYPFFVRTTQSDSYQMTAVAEMVSYY-G--WNAVSVIFVDNEY--GRNGV 181 (930)
Q Consensus 109 ~~~v~~~~~~~~iP~is~~a~~~~l~-~-~~~p~~~r~~p~~~~~~~ai~~~l~~~-~--w~~v~ii~~d~~~--g~~~~ 181 (930)
.......+...++|+|......+... . ...+..-.+..++..-+..++++|... | -++++++...... ...-.
T Consensus 73 ~~~~~~~~~~~~iPvV~~~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~~G~~~~~I~~i~g~~~~~~~~~R~ 152 (288)
T 1gud_A 73 LVMPVARAWKKGIYLVNLDEKIDMDNLKKAGGNVEAFVTTDNVAVGAKGASFIIDKLGAEGGEVAIIEGKAGNASGEARR 152 (288)
T ss_dssp THHHHHHHHHTTCEEEEESSCCCHHHHHHTTCCCSEEEECCHHHHHHHHHHHHHHHHGGGCEEEEEEECSTTCHHHHHHH
T ss_pred HHHHHHHHHHCCCeEEEECCCCCcccccccCCceeEEECCChHHHHHHHHHHHHHHhCCCCCEEEEEeCCCCCchHhHHH
Confidence 22233445568999998653221100 0 000111345677777788888887766 7 7999999854322 33456
Q ss_pred HHHHHHHhhc-ceEEEEEEecCCCCCCChhHHHHHHHHHHhC--CceEEEEEcChhhHHHHHHHHHHcCcccCCeEEEEe
Q 002364 182 SALNDKLAER-RCRISYKSGIPPESGVNTGYVMDLLVKVALM--ESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIAT 258 (930)
Q Consensus 182 ~~l~~~l~~~-g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viil~~~~~~~~~~~~~a~~~g~~~~~~~~i~~ 258 (930)
+.+++++++. |+++..... .+ .+...-...++++.+. .+++|+ +.+...+.-+++++++.|+. .+...++-
T Consensus 153 ~Gf~~al~~~~g~~~~~~~~--~~--~~~~~~~~~~~~ll~~~~~~~ai~-~~nD~~A~g~~~al~~~G~~-~dv~vvGf 226 (288)
T 1gud_A 153 NGATEAFKKASQIKLVASQP--AD--WDRIKALDVATNVLQRNPNIKAIY-CANDTMAMGVAQAVANAGKT-GKVLVVGT 226 (288)
T ss_dssp HHHHHHHHTCTTEEEEEEEE--CT--TCHHHHHHHHHHHHHHCTTCCEEE-ESSHHHHHHHHHHHHHTTCT-TTSEEEEE
T ss_pred HHHHHHHHhCCCcEEEEeec--CC--ccHHHHHHHHHHHHHhCCCceEEE-ECCCchHHHHHHHHHhcCCC-CCeEEEEe
Confidence 7889999887 887654322 11 2234444445554432 356544 45667788899999999984 34455554
Q ss_pred C
Q 002364 259 D 259 (930)
Q Consensus 259 ~ 259 (930)
|
T Consensus 227 D 227 (288)
T 1gud_A 227 D 227 (288)
T ss_dssp S
T ss_pred C
Confidence 3
No 140
>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1
Probab=97.42 E-value=0.0051 Score=62.98 Aligned_cols=197 Identities=12% Similarity=0.031 Sum_probs=122.6
Q ss_pred EEEEEeeCC-CcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCChhHHHH
Q 002364 33 NVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCSTVAHI 111 (930)
Q Consensus 33 ~IG~i~~~s-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~s~~~~~ 111 (930)
+||++.|.. .++-.....+++-++++. |+++.+ .++..++..-.+....+..++|.++|-.......
T Consensus 4 ~Igvi~~~~~~~~~~~~~~gi~~~~~~~--------g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~-- 71 (255)
T 1byk_A 4 VVAIIVTRLDSLSENLAVQTMLPAFYEQ--------GYDPIM--MESQFSPQLVAEHLGVLKRRNIDGVVLFGFTGIT-- 71 (255)
T ss_dssp EEEEEESCTTCHHHHHHHHHHHHHHHHH--------TCEEEE--EECTTCHHHHHHHHHHHHTTTCCEEEEECCTTCC--
T ss_pred EEEEEeCCCCCccHHHHHHHHHHHHHHc--------CCEEEE--EeCCCcHHHHHHHHHHHHhcCCCEEEEecCcccc--
Confidence 689999853 333344556666665553 455544 4555566655555666777788887643222111
Q ss_pred HHHhhccCCCcEEecccCCCCCCCCCCCceEeecCCchHHHHHHHHHHHhcCccEEEEEEEc--C-ccccchHHHHHHHH
Q 002364 112 VSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVD--N-EYGRNGVSALNDKL 188 (930)
Q Consensus 112 v~~~~~~~~iP~is~~a~~~~l~~~~~p~~~r~~p~~~~~~~ai~~~l~~~~w~~v~ii~~d--~-~~g~~~~~~l~~~l 188 (930)
.+.....++|+|...... +.+-.+..++..-+..++++|...|.++++++..+ + ...+.-.+.+++++
T Consensus 72 -~~~l~~~~~pvV~~~~~~--------~~~~~V~~d~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~gf~~al 142 (255)
T 1byk_A 72 -EEMLAHWQSSLVLLARDA--------KGFASVCYDDEGAIKILMQRLYDQGHRNISYLGVPHSDVTTGKRRHEAYLAFC 142 (255)
T ss_dssp -TTTSGGGSSSEEEESSCC--------SSCEEEEECHHHHHHHHHHHHHHTTCCCEEEECCCTTSTTTTHHHHHHHHHHH
T ss_pred -HHHHHhcCCCEEEEcccc--------CCCCEEEEccHHHHHHHHHHHHHcCCCeEEEEecCCCCcccHHHHHHHHHHHH
Confidence 123455689999865321 12345667777788888998888899999999843 2 34456678899999
Q ss_pred hhcceEEEEEEecCCCCCCChhHHHHHHHHHHhCCceEEEEEcChhhHHHHHHHHHHcCcccCCeEEEEe
Q 002364 189 AERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIAT 258 (930)
Q Consensus 189 ~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~~~~~a~~~g~~~~~~~~i~~ 258 (930)
++.|+.+.. +... .+..+....+.++.+.++++|+. .+...+..+++++++.|+ .+...++-
T Consensus 143 ~~~g~~~~~---~~~~--~~~~~~~~~~~~~l~~~~~ai~~-~~d~~A~g~~~al~~~g~--~di~vig~ 204 (255)
T 1byk_A 143 KAHKLHPVA---ALPG--LAMKQGYENVAKVITPETTALLC-ATDTLALGASKYLQEQRI--DTLQLASV 204 (255)
T ss_dssp HHTTCCCEE---ECCC--SCHHHHHHHSGGGCCTTCCEEEE-SSHHHHHHHHHHHHHTTC--CSCEEEEE
T ss_pred HHcCCCcce---eecC--CccchHHHHHHHHhcCCCCEEEE-eChHHHHHHHHHHHHcCC--CcEEEEEe
Confidence 999876431 2222 22344444455554456777654 566778889999999997 34444443
No 141
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=97.40 E-value=0.003 Score=65.67 Aligned_cols=195 Identities=11% Similarity=0.046 Sum_probs=127.9
Q ss_pred CceEEEEEEeeCC-CcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCChh
Q 002364 29 PAVVNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCST 107 (930)
Q Consensus 29 ~~~i~IG~i~~~s-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~s~ 107 (930)
..+-+||+++|.. .++-.....+++-+.++. |+++ +.+.++..++....+....++.++|.++|-..
T Consensus 8 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~~-~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~--- 75 (277)
T 3hs3_A 8 KKSKMIGIIIPDLNNRFYAQIIDGIQEVIQKE--------GYTA-LISFSTNSDVKKYQNAIINFENNNVDGIITSA--- 75 (277)
T ss_dssp CCCCEEEEEESCTTSHHHHHHHHHHHHHHHHT--------TCEE-EEEECSSCCHHHHHHHHHHHHHTTCSEEEEEC---
T ss_pred CCCCEEEEEeCCCCChhHHHHHHHHHHHHHHC--------CCCE-EEEEeCCCChHHHHHHHHHHHhCCCCEEEEcc---
Confidence 3467899999864 333344555665555542 5551 34567777777766677777788888877432
Q ss_pred HHHHHHHhhccCCCcEEecccC-CCCCCCCCCCceEeecCCchHHHHHHHHHHHhcCccEEEEEEEcC--ccccchHHHH
Q 002364 108 VAHIVSYVSNELQVPLLSFGVT-DPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDN--EYGRNGVSAL 184 (930)
Q Consensus 108 ~~~~v~~~~~~~~iP~is~~a~-~~~l~~~~~p~~~r~~p~~~~~~~ai~~~l~~~~w~~v~ii~~d~--~~g~~~~~~l 184 (930)
.....+...++|+|..... .+ + +.+ .+..++..-+..++++|. .|-++++++.... .....-.+.+
T Consensus 76 ---~~~~~~~~~~iPvV~~~~~~~~---~---~~~-~V~~D~~~~g~~a~~~L~-~G~~~I~~i~~~~~~~~~~~R~~Gf 144 (277)
T 3hs3_A 76 ---FTIPPNFHLNTPLVMYDSANIN---D---DIV-RIVSNNTKGGKESIKLLS-KKIEKVLIQHWPLSLPTIRERIEAM 144 (277)
T ss_dssp ---CCCCTTCCCSSCEEEESCCCCC---S---SSE-EEEECHHHHHHHHHHTSC-TTCCEEEEEESCTTSHHHHHHHHHH
T ss_pred ---hHHHHHHhCCCCEEEEcccccC---C---CCE-EEEEChHHHHHHHHHHHH-hCCCEEEEEeCCCcCccHHHHHHHH
Confidence 1223456779999987543 22 1 234 677778888888888888 9999999998542 3345567889
Q ss_pred HHHHhhcceEEEEEEecCCCCCCChhHHHHHHHHHHh--CCceEEEEEcChhhHHHHHHHHHHcCcccCCeE
Q 002364 185 NDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVAL--MESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYV 254 (930)
Q Consensus 185 ~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~viil~~~~~~~~~~~~~a~~~g~~~~~~~ 254 (930)
.+++++.|+.+... ..... .+ ...+.++.+ .++++|+ +.+...+..+++++++.|+..++-+
T Consensus 145 ~~~l~~~g~~~~~~-~~~~~----~~--~~~~~~~l~~~~~~~ai~-~~~d~~A~g~~~al~~~g~~vP~di 208 (277)
T 3hs3_A 145 TAEASKLKIDYLLE-ETPEN----NP--YISAQSALNKSNQFDAII-TVNDLYAAEIIKEAKRRNLKIPDDF 208 (277)
T ss_dssp HHHHHHTTCEEEEE-ECCSS----CH--HHHHHHHHHTGGGCSEEE-CSSHHHHHHHHHHHHHTTCCTTTTC
T ss_pred HHHHHHCCCCCCCC-CccCC----ch--HHHHHHHHcCCCCCCEEE-ECCHHHHHHHHHHHHHcCCCCCCce
Confidence 99999999887654 33322 12 344444443 3466654 4566778889999999998655433
No 142
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=97.38 E-value=0.0044 Score=66.30 Aligned_cols=205 Identities=9% Similarity=-0.056 Sum_probs=129.1
Q ss_pred eEEEEEEeeCC-CcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCChHHHHHHHHHHHhcCcEEEE-cCCChhH
Q 002364 31 VVNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAII-GPQCSTV 108 (930)
Q Consensus 31 ~i~IG~i~~~s-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aii-Gp~~s~~ 108 (930)
..+||+++|.. .++-.....+++-+.++. |+++. +.++..++....+....++.++|.+|| .|.....
T Consensus 3 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~--~~~~~~~~~~~~~~i~~~~~~~vdgiIi~~~~~~~ 72 (330)
T 3uug_A 3 KGSVGIAMPTKSSARWIDDGNNIVKQLQEA--------GYKTD--LQYADDDIPNQLSQIENMVTKGVKVLVIASIDGTT 72 (330)
T ss_dssp CCEEEEEECCSSSTHHHHHHHHHHHHHHHT--------TCEEE--EEECTTCHHHHHHHHHHHHHHTCSEEEECCSSGGG
T ss_pred CcEEEEEeCCCcchHHHHHHHHHHHHHHHc--------CCEEE--EeeCCCCHHHHHHHHHHHHHcCCCEEEEEcCCchh
Confidence 46899999964 444445566666666552 55544 455777888878888888888888886 4555445
Q ss_pred HHHHHHhhccCCCcEEecccCCCCCCCCCCCceEeecCCchHHHHHHHHHHHh-------cCccEEEEEEEcC--ccccc
Q 002364 109 AHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSY-------YGWNAVSVIFVDN--EYGRN 179 (930)
Q Consensus 109 ~~~v~~~~~~~~iP~is~~a~~~~l~~~~~p~~~r~~p~~~~~~~ai~~~l~~-------~~w~~v~ii~~d~--~~g~~ 179 (930)
.......+...++|+|......+.. . +....+..++...+..++++|.. .|-++++++.... ...+.
T Consensus 73 ~~~~~~~~~~~giPvV~~~~~~~~~--~--~~~~~V~~D~~~~g~~a~~~l~~~~~~~~~~G~~~i~~i~g~~~~~~~~~ 148 (330)
T 3uug_A 73 LSDVLKQAGEQGIKVIAYDRLIRNS--G--DVSYYATFDNFQVGVLQATSITDKLGLKDGKGPFNIELFGGSPDDNNAFF 148 (330)
T ss_dssp GHHHHHHHHHTTCEEEEESSCCCSC--T--TCCEEEEECHHHHHHHHHHHHHHHHTGGGTCCCEEEEECBCCTTCHHHHH
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCC--C--ceeEEEEeCHHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCCchHHH
Confidence 5556667778899999875543321 1 12234556777788888888766 6888999986432 23345
Q ss_pred hHHHHHHHHhhc---c-eEEEEEE-----ecCCCCCCChhHHHHHHHHHHh-----CCceEEEEEcChhhHHHHHHHHHH
Q 002364 180 GVSALNDKLAER---R-CRISYKS-----GIPPESGVNTGYVMDLLVKVAL-----MESRVIVLHVSPSLGFQVFSVAKY 245 (930)
Q Consensus 180 ~~~~l~~~l~~~---g-~~v~~~~-----~~~~~~~~~~~~~~~~l~~l~~-----~~~~viil~~~~~~~~~~~~~a~~ 245 (930)
-.+.+++++++. | +.+.... ..... .+.......+.++.+ ..+++|+ +.+...+..+++++++
T Consensus 149 R~~Gf~~al~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~ai~-~~nd~~A~g~~~al~~ 225 (330)
T 3uug_A 149 FYDGAMSVLKPYIDSGKLVVKSGQMGMDKVGTLR--WDPATAQARMDNLLSAYYTDAKVDAVL-SPYDGLSIGIISSLKG 225 (330)
T ss_dssp HHHHHHHHHHHHHHHTSEECTTCCCSHHHHBCGG--GCHHHHHHHHHHHHHHHCSSSCCCEEE-CSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccCceEEeecccccccccCCC--CCHHHHHHHHHHHHHhcCCCCCeEEEE-ECCCchHHHHHHHHHH
Confidence 567888888876 3 4442110 00111 122333344444433 4556544 4566778889999999
Q ss_pred cCcccCC
Q 002364 246 LGMMGNG 252 (930)
Q Consensus 246 ~g~~~~~ 252 (930)
+|+..+.
T Consensus 226 ~g~~vP~ 232 (330)
T 3uug_A 226 VGYGTKD 232 (330)
T ss_dssp TTCSSSS
T ss_pred cCCCCCC
Confidence 9986543
No 143
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=97.38 E-value=0.0028 Score=67.00 Aligned_cols=206 Identities=11% Similarity=0.057 Sum_probs=127.0
Q ss_pred CceEEEEEEeeC------CCcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEc
Q 002364 29 PAVVNVGALFTL------DSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIG 102 (930)
Q Consensus 29 ~~~i~IG~i~~~------s~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiG 102 (930)
..+-+||+++|. +.++-.....+++-+.++. |+++. +.++..++.........+..++|.+||-
T Consensus 20 ~~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdgiIi 89 (305)
T 3huu_A 20 NKTLTIGLIQKSSAPEIRQNPFNSDVLNGINQACNVR--------GYSTR--MTVSENSGDLYHEVKTMIQSKSVDGFIL 89 (305)
T ss_dssp -CCCEEEEECSCCSHHHHTSHHHHHHHHHHHHHHHHH--------TCEEE--ECCCSSHHHHHHHHHHHHHTTCCSEEEE
T ss_pred CCCCEEEEEeCCCccccccCcHHHHHHHHHHHHHHHC--------CCEEE--EEeCCCChHHHHHHHHHHHhCCCCEEEE
Confidence 346789999997 2333344556666555553 45444 4666666555555556666778888764
Q ss_pred -CCChhHHHHHHHhhccCCCcEEecccCCCCCCCCCCCceEeecCCchHHHHHHHHHHHhcCccEEEEEEEcCc--cccc
Q 002364 103 -PQCSTVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNE--YGRN 179 (930)
Q Consensus 103 -p~~s~~~~~v~~~~~~~~iP~is~~a~~~~l~~~~~p~~~r~~p~~~~~~~ai~~~l~~~~w~~v~ii~~d~~--~g~~ 179 (930)
|.... ......+...++|+|...... .. +.+-.+..++..-+..++++|...|-++++++..+.. ..+.
T Consensus 90 ~~~~~~--~~~~~~l~~~~iPvV~i~~~~---~~---~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~ 161 (305)
T 3huu_A 90 LYSLKD--DPIEHLLNEFKVPYLIVGKSL---NY---ENIIHIDNDNIDAAYQLTQYLYHLGHRHILFLQESGHYAVTED 161 (305)
T ss_dssp SSCBTT--CHHHHHHHHTTCCEEEESCCC---SS---TTCCEEECCHHHHHHHHHHHHHHTTCCSEEEEEESSCBHHHHH
T ss_pred eCCcCC--cHHHHHHHHcCCCEEEECCCC---cc---cCCcEEEeCHHHHHHHHHHHHHHCCCCeEEEEcCCcccchhHH
Confidence 33222 234556667899999865432 11 2234566777888888899998889999999986543 3445
Q ss_pred hHHHHHHHHhhcceEEEEEEecCCCCCCChhHHHHHHHHH-Hh--CCceEEEEEcChhhHHHHHHHHHHcCcccCC-eEE
Q 002364 180 GVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKV-AL--MESRVIVLHVSPSLGFQVFSVAKYLGMMGNG-YVW 255 (930)
Q Consensus 180 ~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l-~~--~~~~viil~~~~~~~~~~~~~a~~~g~~~~~-~~~ 255 (930)
-.+.+++++++.|+.+.. .+... .+.....+.++ .+ .++++|+ +.+...+..+++++++.|+..++ ...
T Consensus 162 R~~Gf~~~l~~~g~~~~~--~~~~~----~~~~~~~~~~~~l~~~~~~~ai~-~~nd~~A~g~~~al~~~g~~vP~di~v 234 (305)
T 3huu_A 162 RSVGFKQYCDDVKISNDC--VVIKS----MNDLRDFIKQYCIDASHMPSVII-TSDVMLNMQLLNVLYEYQLRIPEDIQT 234 (305)
T ss_dssp HHHHHHHHHHHTTCCCCE--EEECS----HHHHHHHC--------CCCSEEE-ESSHHHHHHHHHHHHHTTCCTTTTCEE
T ss_pred HHHHHHHHHHHcCCCccc--EEecC----cHHHHHHHHHhhhcCCCCCCEEE-ECChHHHHHHHHHHHHcCCCCCcceEE
Confidence 678899999999876543 11111 11133344444 32 3566655 46677888899999999986543 344
Q ss_pred EEeC
Q 002364 256 IATD 259 (930)
Q Consensus 256 i~~~ 259 (930)
++-|
T Consensus 235 ig~D 238 (305)
T 3huu_A 235 ATFN 238 (305)
T ss_dssp EEES
T ss_pred EEEC
Confidence 4443
No 144
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=97.36 E-value=0.0065 Score=65.30 Aligned_cols=203 Identities=10% Similarity=0.040 Sum_probs=128.0
Q ss_pred ceEEEEEEeeCC-CcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEc-CCChh
Q 002364 30 AVVNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIG-PQCST 107 (930)
Q Consensus 30 ~~i~IG~i~~~s-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiG-p~~s~ 107 (930)
.+-.||+++|.. .++-.....+++-+.++. |+++. +.++..++..-.+....++.++|.+||- |....
T Consensus 61 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~ 130 (339)
T 3h5o_A 61 KSRTVLVLIPSLANTVFLETLTGIETVLDAA--------GYQML--IGNSHYDAGQELQLLRAYLQHRPDGVLITGLSHA 130 (339)
T ss_dssp --CEEEEEESCSTTCTTHHHHHHHHHHHHHT--------TCEEE--EEECTTCHHHHHHHHHHHHTTCCSEEEEECSCCC
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHHHHC--------CCEEE--EEeCCCChHHHHHHHHHHHcCCCCEEEEeCCCCC
Confidence 456899999864 334445666776666552 55554 5667777777667777778888887763 22222
Q ss_pred HHHHHHHhhccCCCcEEecccCCCCCCCCCCCceEeecCCchHHHHHHHHHHHhcCccEEEEEEEcC-ccccchHHHHHH
Q 002364 108 VAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDN-EYGRNGVSALND 186 (930)
Q Consensus 108 ~~~~v~~~~~~~~iP~is~~a~~~~l~~~~~p~~~r~~p~~~~~~~ai~~~l~~~~w~~v~ii~~d~-~~g~~~~~~l~~ 186 (930)
. .....+...++|+|......+ . +.. ....++..-+..++++|...|-++++++..+. .....-.+.+.+
T Consensus 131 ~--~~~~~l~~~~iPvV~~~~~~~---~---~~~-~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~R~~Gf~~ 201 (339)
T 3h5o_A 131 E--PFERILSQHALPVVYMMDLAD---D---GRC-CVGFSQEDAGAAITRHLLSRGKRRIGFLGAQLDERVMKRLDGYRA 201 (339)
T ss_dssp T--THHHHHHHTTCCEEEEESCCS---S---SCC-EEECCHHHHHHHHHHHHHHTTCCSEEEEEESCCHHHHHHHHHHHH
T ss_pred H--HHHHHHhcCCCCEEEEeecCC---C---CCe-EEEECHHHHHHHHHHHHHHCCCCeEEEEeCCCCccHHHHHHHHHH
Confidence 1 345556778999997643211 1 222 66677888888889999888999999998653 334455678899
Q ss_pred HHhhcceEEE-EEEecCCCCCCChhHHHHHHHHHHh--CCceEEEEEcChhhHHHHHHHHHHcCcccCCeE
Q 002364 187 KLAERRCRIS-YKSGIPPESGVNTGYVMDLLVKVAL--MESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYV 254 (930)
Q Consensus 187 ~l~~~g~~v~-~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~viil~~~~~~~~~~~~~a~~~g~~~~~~~ 254 (930)
++++.|+... ........ .+...-...+.++.+ ..+++|+ +.+...+..+++++++.|+..++-+
T Consensus 202 al~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~ll~~~~~~~ai~-~~nD~~A~g~~~al~~~G~~vP~di 269 (339)
T 3h5o_A 202 ALDAADCRDAGLEWLDPQP--SSMQMGADMLDRALAERPDCDALF-CCNDDLAIGALARSQQLGIAVPERL 269 (339)
T ss_dssp HHHHTTCCCGGGEEEECSC--CCHHHHHHHHHHHHHHCTTCCEEE-ESSHHHHHHHHHHHHHTTCCTTTTC
T ss_pred HHHHCCCCCCChheEecCC--CCHHHHHHHHHHHHcCCCCCcEEE-ECChHHHHHHHHHHHHcCCCCCCCE
Confidence 9998886211 00111111 223444445555543 3567665 4666778889999999998755433
No 145
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=97.36 E-value=0.0055 Score=67.91 Aligned_cols=211 Identities=12% Similarity=0.071 Sum_probs=126.3
Q ss_pred CCceEEEEEEeeCCCcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCChh
Q 002364 28 RPAVVNVGALFTLDSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCST 107 (930)
Q Consensus 28 ~~~~i~IG~i~~~s~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~s~ 107 (930)
...+-+||+++|.+.++-.....+++-+.++. |+.+.+...+... .....+..++|++||-..
T Consensus 22 ~~~s~~Igvv~~~~~~f~~~l~~gi~~~a~~~--------g~~~~i~~~~~~~------~~i~~l~~~~vDGiIi~~--- 84 (412)
T 4fe7_A 22 FTKRHRITLLFNANKAYDRQVVEGVGEYLQAS--------QSEWDIFIEEDFR------ARIDKIKDWLGDGVIADF--- 84 (412)
T ss_dssp CCCCEEEEEECCTTSHHHHHHHHHHHHHHHHH--------TCCEEEEECC-CC--------------CCCSEEEEET---
T ss_pred CCCCceEEEEeCCcchhhHHHHHHHHHHHHhc--------CCCeEEEecCCcc------chhhhHhcCCCCEEEEec---
Confidence 44578999999866655556667777666664 4555554433221 123445566888887522
Q ss_pred HHHHHHHhhccCCCcEEecccCCCCCCCCCCCceEeecCCchHHHHHHHHHHHhcCccEEEEEEEcCcc----ccchHHH
Q 002364 108 VAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEY----GRNGVSA 183 (930)
Q Consensus 108 ~~~~v~~~~~~~~iP~is~~a~~~~l~~~~~p~~~r~~p~~~~~~~ai~~~l~~~~w~~v~ii~~d~~~----g~~~~~~ 183 (930)
........+...++|+|......+... ..+.+-.+..++..-+..++++|...|-++++++...... ...-.+.
T Consensus 85 ~~~~~~~~l~~~~iPvV~i~~~~~~~~--~~~~~~~V~~D~~~~g~~a~~~L~~~G~r~I~~i~~~~~~~~~~~~~R~~G 162 (412)
T 4fe7_A 85 DDKQIEQALADVDVPIVGVGGSYHLAE--SYPPVHYIATDNYALVESAFLHLKEKGVNRFAFYGLPESSGKRWATEREYA 162 (412)
T ss_dssp TCHHHHHHHTTCCSCEEEEEECCSSGG--GSCSSEEEEECHHHHHHHHHHHHHHTTCCEEEEECCCTTSCCHHHHHHHHH
T ss_pred CChHHHHHHhhCCCCEEEecCCccccc--cCCCCCEEEeCHHHHHHHHHHHHHHcCCceEEEecccccccccHHHHHHHH
Confidence 223455667788999998765432211 1233456677788888889999988999999999855432 4556788
Q ss_pred HHHHHhhcceEEEEEEecCCCCCCChhHHHHHHHHHHh--CCceEEEEEcChhhHHHHHHHHHHcCcccCC-eEEEEeC
Q 002364 184 LNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVAL--MESRVIVLHVSPSLGFQVFSVAKYLGMMGNG-YVWIATD 259 (930)
Q Consensus 184 l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~viil~~~~~~~~~~~~~a~~~g~~~~~-~~~i~~~ 259 (930)
+.+++++.|+........... ..+.......+.++.+ .++++|+ +.+...+..+++++++.|+..++ ...++-|
T Consensus 163 f~~al~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~aI~-~~nD~~A~g~~~al~~~G~~vP~disvig~D 239 (412)
T 4fe7_A 163 FRQLVAEEKYRGVVYQGLETA-PENWQHAQNRLADWLQTLPPQTGII-AVTDARARHILQVCEHLHIPVPEKLCVIGID 239 (412)
T ss_dssp HHHHHTTSSSCCEEECCSCSS-CSSHHHHHHHHHHHHHHSCTTEEEE-ESSHHHHHHHHHHHHHHTCCTTTTSEEEESS
T ss_pred HHHHHHHcCCCcccccccccc-ccchhhHHHHHHHHHHhCCCCeEEE-EEecHHHHHHHHHHHHcCCCCCceEEEEeec
Confidence 999999998764322111111 0112233344444332 3466655 55667788899999999986544 3444433
No 146
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=97.35 E-value=0.0067 Score=64.97 Aligned_cols=200 Identities=12% Similarity=0.039 Sum_probs=126.9
Q ss_pred ceEEEEEEeeCC-CcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCChhH
Q 002364 30 AVVNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCSTV 108 (930)
Q Consensus 30 ~~i~IG~i~~~s-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~s~~ 108 (930)
.+-+||+++|.. .++-.....+++-+.++. |+++.+ .++.. +.........++.++|.+||-...
T Consensus 63 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~--~~~~~-~~~~~~~~~~l~~~~vdGiIi~~~--- 128 (333)
T 3jvd_A 63 RSALVGVIVPDLSNEYYSESLQTIQQDLKAA--------GYQMLV--AEANS-VQAQDVVMESLISIQAAGIIHVPV--- 128 (333)
T ss_dssp -CCEEEEEESCSSSHHHHHHHHHHHHHHHHH--------TCEEEE--EECCS-HHHHHHHHHHHHHHTCSEEEECCC---
T ss_pred CCCEEEEEeCCCcChHHHHHHHHHHHHHHHC--------CCEEEE--ECCCC-hHHHHHHHHHHHhCCCCEEEEcch---
Confidence 456899999864 333445566666666653 555554 44444 555555566677778888875433
Q ss_pred HHHHHHhhccCCCcEEecccCCCCCCCCCCCceEeecCCchHHHHHHHHHHHhcCccEEEEEEEcCc--cccchHHHHHH
Q 002364 109 AHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNE--YGRNGVSALND 186 (930)
Q Consensus 109 ~~~v~~~~~~~~iP~is~~a~~~~l~~~~~p~~~r~~p~~~~~~~ai~~~l~~~~w~~v~ii~~d~~--~g~~~~~~l~~ 186 (930)
...+...++|+|......+. +.+-.+..++..-+..++++|...|-++++++..... ....-.+.+.+
T Consensus 129 ----~~~~~~~~iPvV~~~~~~~~------~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~ 198 (333)
T 3jvd_A 129 ----VGSIAPEGIPMVQLTRGELG------PGFPRVLCDDEAGFFQLTESVLGGSGMNIAALVGEESLSTTQERMRGISH 198 (333)
T ss_dssp ----TTCCC-CCSCEEEECC----------CCSCEEEECHHHHHHHHHHHHCCSSSCEEEEEESCTTSHHHHHHHHHHHH
T ss_pred ----HHHHhhCCCCEEEECccCCC------CCCCEEEEChHHHHHHHHHHHHHCCCCeEEEEeCCCCCccHHHHHHHHHH
Confidence 44566789999987543321 2233456677778888899998899999999985532 34456788999
Q ss_pred HHhhcceEEEEEEecCCCCCCChhHHHHHHHHHHhCC-ceEEEEEcChhhHHHHHHHHHHcCcccCC-eEEEEeC
Q 002364 187 KLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALME-SRVIVLHVSPSLGFQVFSVAKYLGMMGNG-YVWIATD 259 (930)
Q Consensus 187 ~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~-~~viil~~~~~~~~~~~~~a~~~g~~~~~-~~~i~~~ 259 (930)
++++.|+... .... . .+..+....+.++.+.. +++|+ +.+...+..+++++++.|+..++ ...++-|
T Consensus 199 al~~~g~~~~--~~~~-~--~~~~~~~~~~~~ll~~~~~~ai~-~~nd~~A~g~~~al~~~G~~vP~disvig~D 267 (333)
T 3jvd_A 199 AASIYGAEVT--FHFG-H--YSVESGEEMAQVVFNNGLPDALI-VASPRLMAGVMRAFTRLNVRVPHDVVIGGYD 267 (333)
T ss_dssp HHHHTTCEEE--EEEC-C--SSHHHHHHHHHHHHHTCCCSEEE-ECCHHHHHHHHHHHHHTTCCTTTTCEEEEES
T ss_pred HHHHCCCCEE--EecC-C--CCHHHHHHHHHHHhcCCCCcEEE-ECCHHHHHHHHHHHHHcCCCCCCceEEEEEC
Confidence 9999998721 1111 1 22445455556554433 66665 45667788899999999986544 3344433
No 147
>3ix1_A N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine protein; periplasmic N-formyl-4-amino-5-aminomethyl-2-methylpyrimidin protein; HET: NFM; 2.40A {Bacillus halodurans c-125}
Probab=97.33 E-value=0.0008 Score=71.15 Aligned_cols=79 Identities=6% Similarity=-0.005 Sum_probs=53.2
Q ss_pred CcceEeeeHHHHHHHHHhCCCcccEEEEecCCCCCCCCHHHHHHHHHcCcccEEEeee-eeec---Cceeeeeecccccc
Q 002364 487 SDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGDI-TIVT---NRTKIVDFSQPYAA 562 (930)
Q Consensus 487 ~~~~~G~~~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~D~~~~~~-~~t~---~r~~~vdft~p~~~ 562 (930)
+..+.|+.+.+-+-+.++.|++ +++++. +....++..|.+|++|+++++. .... +....+.+..++..
T Consensus 14 ~~~~~~~~va~~~g~~~~~Gl~--v~~~~~------~~~~~~~~~l~~G~~D~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 85 (302)
T 3ix1_A 14 NAVHTFLYVAIENGYFAEEGLD--VDIVFP------TNPTDPIQLTASGAIPLALSYQPDVILARSKDLPVVSVASVVRS 85 (302)
T ss_dssp CGGGHHHHHHHHTTHHHHTTEE--EEEECC------SSTTHHHHHHHHTSCSEEEECHHHHHHHHHTTCCEEEEEEEECS
T ss_pred CcccHHHHHHHHcChHHHcCCc--EEEecC------CCCchHHHHHHCCCCCEEecCHHHHHHHHHCCCCEEEEEEEecc
Confidence 4445688888888888899955 555542 2345899999999999998762 2222 33345566666666
Q ss_pred cceEEEEeccC
Q 002364 563 SGLVVVVPFRK 573 (930)
Q Consensus 563 ~~~~~lv~~~~ 573 (930)
.+..+++++..
T Consensus 86 ~~~~l~~~~~s 96 (302)
T 3ix1_A 86 PLNHVMFLAEQ 96 (302)
T ss_dssp CCEEEEEEGGG
T ss_pred CCEEEEEECCC
Confidence 67777776543
No 148
>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A*
Probab=97.30 E-value=0.016 Score=61.39 Aligned_cols=206 Identities=12% Similarity=0.037 Sum_probs=113.6
Q ss_pred ceEEEEEEee---CCC-cchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCC
Q 002364 30 AVVNVGALFT---LDS-TIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQC 105 (930)
Q Consensus 30 ~~i~IG~i~~---~s~-~~g~~~~~a~~~Av~~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~ 105 (930)
++.+||+++| .+. ++-.....|++.+.++. |+++.+. ++..+ .........++++++.+||....
T Consensus 3 ~~~~Ig~v~~~g~~~d~~f~~~~~~Gi~~~~~~~--------g~~~~~~--~~~~~-~~~~~~l~~l~~~~~dgIi~~~~ 71 (318)
T 2fqx_A 3 GDFVVGMVTDSGDIDDKSFNQQVWEGISRFAQEN--------NAKCKYV--TASTD-AEYVPSLSAFADENMGLVVACGS 71 (318)
T ss_dssp CCCEEEEEESSSCTTSSSHHHHHHHHHHHHHHHT--------TCEEEEE--ECCSG-GGHHHHHHHHHHTTCSEEEEEST
T ss_pred CCcEEEEEEcCCCCCCccHHHHHHHHHHHHHHHh--------CCeEEEE--eCCCH-HHHHHHHHHHHHcCCCEEEECCh
Confidence 3578999997 222 33334445555555442 4555443 33322 22334556677778888886432
Q ss_pred hhHHHHHHHhhccC-CCcEEecccCCCCCCCCCCCceEeecCCchHHHHHH----HHHHHhcCc-cEEEEEEEc-Ccccc
Q 002364 106 STVAHIVSYVSNEL-QVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAV----AEMVSYYGW-NAVSVIFVD-NEYGR 178 (930)
Q Consensus 106 s~~~~~v~~~~~~~-~iP~is~~a~~~~l~~~~~p~~~r~~p~~~~~~~ai----~~~l~~~~w-~~v~ii~~d-~~~g~ 178 (930)
.. ..++..++..+ ++|++......+ . .+.+-.... +..++..+ +.++...|- +++++|... .....
T Consensus 72 ~~-~~~~~~~a~~~p~~p~v~id~~~~---~--~~~~~~v~~-d~~~~~~lag~~a~~l~~~Gh~r~Ig~i~g~~~~~~~ 144 (318)
T 2fqx_A 72 FL-VEAVIETSARFPKQKFLVIDAVVQ---D--RDNVVSAVF-GQNEGSFLVGVAAALKAKEAGKSAVGFIVGMELGMMP 144 (318)
T ss_dssp TT-HHHHHHHHHHCTTSCEEEESSCCC---S--CTTEEEEEE-CHHHHHHHHHHHHHHHHHHTTCCEEEEEESCCSTTTH
T ss_pred hH-HHHHHHHHHHCCCCEEEEEcCccC---C--CCCEEEEEe-chHHHHHHHHHHHHHHhccCCCcEEEEEeCcccHHHH
Confidence 22 22345555543 899987643221 0 123323333 34444444 466666776 899999743 23334
Q ss_pred chHHHHHHHHhhcceEEEEEEecCCCCCC-ChhHHHHHHHHHHhCCceEEEEEcChhhHHHHHHHHHHcCcccCCeEEEE
Q 002364 179 NGVSALNDKLAERRCRISYKSGIPPESGV-NTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIA 257 (930)
Q Consensus 179 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~-~~~~~~~~l~~l~~~~~~viil~~~~~~~~~~~~~a~~~g~~~~~~~~i~ 257 (930)
...+.+++.+++.|..+.....+... . +...-.....++.+.++++|+. .+...+.-++++++++|+. +.-++++
T Consensus 145 ~r~~Gf~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~a~~ll~~~~daI~~-~~d~~a~Gv~~a~~e~g~~-P~dv~vi 220 (318)
T 2fqx_A 145 LFEAGFEAGVKAVDPDIQVVVEVANT--FSDPQKGQALAAKLYDSGVNVIFQ-VAGGTGNGVIKEARDRRLN-GQDVWVI 220 (318)
T ss_dssp HHHHHHHHHHHHHCTTCEEEEEECSC--SSCHHHHHHHHHHHHHTTCCEEEE-ECGGGHHHHHHHHHHHHHT-TCCCEEE
T ss_pred HHHHHHHHHHHHHCCCCEEEEEEccC--ccCHHHHHHHHHHHHHCCCcEEEE-CCCCCchHHHHHHHhhhhc-cCCcEEE
Confidence 55778888888877543322222211 1 1233334455555567887664 4556677888999998876 4444444
No 149
>2f5x_A BUGD; periplasmic binding protein, transport protein; 1.72A {Bordetella pertussis tohama I}
Probab=97.28 E-value=0.0018 Score=68.18 Aligned_cols=122 Identities=13% Similarity=0.183 Sum_probs=79.6
Q ss_pred CCCCChHHhhh------CCCCeEEEe-CchHH---HHHHHhhccccccceecCCHHHHHHHHhcCCCCCceEEEEecchh
Q 002364 680 SPINGIESLRK------SDDPIGYQE-GSFAE---YYLSQELNISKSRLVALRTPEDYAKALKDGPGKGGVAAVVDERPY 749 (930)
Q Consensus 680 ~~i~s~~dL~~------~~~~v~~~~-~s~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~i~~~~~ 749 (930)
.+++|++||.. ....+|... |+..+ ..+.+..+.. ...++|....+.+.+|.. |++|+++.....
T Consensus 121 s~~~sl~dL~~~ak~~p~~~~~g~~g~Gs~~hl~~~~l~~~~Gi~-~~~Vpy~G~~~a~~aL~~----G~VD~~~~~~~~ 195 (312)
T 2f5x_A 121 FPPNNIKELAEYVKKNADKISLANAGIGAASHLCGTMLVEALGVN-LLTIPYKGTAPAMNDLLG----KQVDLMCDQTTN 195 (312)
T ss_dssp CSCCSHHHHHHHHHHHGGGCEEEESSTTSHHHHHHHHHHHHHTCC-CEEEECSSHHHHHHHHHT----TSSCEEEEEHHH
T ss_pred CCCCCHHHHHHHHHhCCCceEEeCCCCCcHHHHHHHHHHHHHCCC-eEEeccCChHHHHHHHHc----CCccEEEechHH
Confidence 58999999974 223455542 44322 2333344443 335688889999999999 999999988766
Q ss_pred HHHHHhcC-cc-EEEeC--------c--ccc---------ccceeeeeCCCCc--chHHHHHHHHhhhhccchHHHHHHh
Q 002364 750 VELFLSSQ-CS-FRIVG--------Q--EFT---------KSGWGFAFPRDSP--LAVDLSSAILELAENGDLQRIHDKW 806 (930)
Q Consensus 750 ~~~~~~~~-~~-l~~~~--------~--~~~---------~~~~~~~~~k~sp--l~~~i~~~i~~l~e~G~~~~~~~~w 806 (930)
...+.+.. .+ |-+.. + .+. ...++++.|++-| ++..+++++.++.+++.+++..+++
T Consensus 196 ~~~~i~~g~lr~Lav~~~~r~~~~pdvPt~~E~G~~~~~~~~w~gl~ap~g~p~~vv~~l~~al~~~~~~p~~~~~~~~~ 275 (312)
T 2f5x_A 196 TTQQITSGKVKAYAVTSLKRVPTLPDLPTMDESGYKGFEVGIWHGMWAPKGTPKPVVDKLVKSLQAGLADPKFQERMKQL 275 (312)
T ss_dssp HHHHHHTTSSEEEEECSSSCCTTSTTSCBTTTTTCTTCCCEEEEEEEEETTCCHHHHHHHHHHHHHHHTCHHHHHHHHHT
T ss_pred HHHHHHcCCeEEEEEcCccchhhcCCCCCHhhcCCCCeeEEEEEEEEEcCCCCHHHHHHHHHHHHHHHcCHHHHHHHHHC
Confidence 55444432 22 22211 1 010 1125788999976 9999999999999999887766654
No 150
>3qsl_A Putative exported protein; unknown, structural genomics, PSI-biology, midwest center FO structural genomics, MCSG, unknown function; HET: MSE CIT; 2.00A {Bordetella bronchiseptica}
Probab=97.28 E-value=0.0015 Score=70.48 Aligned_cols=137 Identities=16% Similarity=0.216 Sum_probs=95.7
Q ss_pred HHhCCCcccEEEEecCCCCCCCCHHHHHHHHHcCcccEEEeeeeee----cCceeeeeecccccccceEEEEeccCCCCC
Q 002364 502 VNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGDITIV----TNRTKIVDFSQPYAASGLVVVVPFRKLNTG 577 (930)
Q Consensus 502 ~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~t----~~r~~~vdft~p~~~~~~~~lv~~~~~~~~ 577 (930)
.++.|++ +++.++ ++|..++..|.+|++|+++++.... .++.....+..++...+..+++++..
T Consensus 59 ~~~~g~~--v~~~~~------~~~~~~~~~l~~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~---- 126 (346)
T 3qsl_A 59 FKDEGLD--VSIADF------AGGSKALQAVVGGSADVVSGAFEHTLSLQAKGQFYRAFALQGRAPMIGVGVSKKN---- 126 (346)
T ss_dssp HHHTTCE--EEEEEC------SSHHHHHHHHHTTSCSEEEEETHHHHHHHHTTCCEEEEEESBSSCCEEEEEETTT----
T ss_pred hHhhCCe--EEEEec------CChHHHHHHHHCCCCCEEccchHHHHHHHhCCCCeEEEEecccCCCcEEEEecCc----
Confidence 3567855 555442 5699999999999999988765443 45566677777776667777776543
Q ss_pred cceeeccCchhHHHHHHHHHHHHHHHhhhhhcccCCCCCCCccccchhhhHHHHHHhhhcCcCcccccchhhhHHHHHHH
Q 002364 578 AWAFLRPFSPLMWTVTACFFVVVGIVVWILEHRINDEFRGPPKRQVITILWFSLSTLFFAHKENTVSTLGRLVLIIWLFV 657 (930)
Q Consensus 578 ~~~~l~PF~~~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~s~R~~~~~w~~~ 657 (930)
T Consensus 127 -------------------------------------------------------------------------------- 126 (346)
T 3qsl_A 127 -------------------------------------------------------------------------------- 126 (346)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhhhhhhhhhhheeeecccccCCCCChHHhhhCCCCeEEE-eCchHHHHHH---Hhhcccc--ccceecCCHHHHHHHH
Q 002364 658 VLIINSSYTASLTSILTVQQLYSPINGIESLRKSDDPIGYQ-EGSFAEYYLS---QELNISK--SRLVALRTPEDYAKAL 731 (930)
Q Consensus 658 ~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~~v~~~-~~s~~~~~l~---~~~~~~~--~~~~~~~~~~~~~~~l 731 (930)
.++|++++||. |+++++. .|+....++. +..+... .+++.+....+...+|
T Consensus 127 ---------------------~~~i~s~~DL~--Gk~i~~~~~gs~~~~~~~~~l~~~G~~~~~v~~~~~~~~~~~~~al 183 (346)
T 3qsl_A 127 ---------------------LPGYKGPADLK--GRKIGVTAPGSSTNMVVNFFLAKHGLKASDVSFIGVGAGAGAVTAL 183 (346)
T ss_dssp ---------------------CTTCCSGGGGT--TCEEEESSTTSHHHHHHHHHHHHTTCCGGGSEEEECCSSHHHHHHH
T ss_pred ---------------------ccCCCChHHcC--CCEEEECCCCcHHHHHHHHHHHHcCCCHHHeEEEecCCcHHHHHHH
Confidence 13899999997 8899998 5664433332 3344432 3456677778899999
Q ss_pred hcCCCCCceEEEEecchhHHHHHhcC
Q 002364 732 KDGPGKGGVAAVVDERPYVELFLSSQ 757 (930)
Q Consensus 732 ~~~~~~g~~~a~i~~~~~~~~~~~~~ 757 (930)
.+ |++|+++...+.......+.
T Consensus 184 ~~----G~vDa~~~~~p~~~~~~~~g 205 (346)
T 3qsl_A 184 RS----GQIDAISNTDPVVSMLETSG 205 (346)
T ss_dssp HH----TSCSEEEEETTHHHHHHHTT
T ss_pred Hc----CCccEEEecchhHHHHHhCC
Confidence 99 89999998877776655443
No 151
>3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, adenine; HET: ADE; 2.05A {Brucella melitensis biovar abortus}
Probab=97.21 E-value=0.022 Score=61.02 Aligned_cols=201 Identities=13% Similarity=0.001 Sum_probs=116.2
Q ss_pred CCCCceEEEEEEeeCC---CcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEc
Q 002364 26 SARPAVVNVGALFTLD---STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIG 102 (930)
Q Consensus 26 ~~~~~~i~IG~i~~~s---~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiG 102 (930)
++.+.+.+||++++-. ..+-.....|++.+.++.+ -++++.+.++..+.....+...+++++++.+||+
T Consensus 21 ~~~~~~~kIglv~~g~i~D~~f~~~~~~G~~~~~~~~G--------~~~~~~~~e~~~~~~d~~~~l~~l~~~g~d~Ii~ 92 (356)
T 3s99_A 21 SMAEEKLKVGFIYIGPPGDFGWTYQHDQARKELVEALG--------DKVETTFLENVAEGADAERSIKRIARAGNKLIFT 92 (356)
T ss_dssp -----CEEEEEECSSCGGGSSHHHHHHHHHHHHHHHHT--------TTEEEEEECSCCTTHHHHHHHHHHHHTTCSEEEE
T ss_pred cccCCCCEEEEEEccCCCchhHHHHHHHHHHHHHHHhC--------CceEEEEEecCCCHHHHHHHHHHHHHCCCCEEEE
Confidence 3456789999999742 2333455666666666552 2256666676655555566778888889999998
Q ss_pred CCChhHHHHHHHhhccC-CCcEEecccCCCCCCCCCCCceEeecCCchHHHHHHHH----HHHhcCccEEEEEEEcC-cc
Q 002364 103 PQCSTVAHIVSYVSNEL-QVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAE----MVSYYGWNAVSVIFVDN-EY 176 (930)
Q Consensus 103 p~~s~~~~~v~~~~~~~-~iP~is~~a~~~~l~~~~~p~~~r~~p~~~~~~~ai~~----~l~~~~w~~v~ii~~d~-~~ 176 (930)
.. .....++..++.++ ++|++-..... . .|++..... +..++..++- ++.+ -++|++|.... +.
T Consensus 93 ~g-~~~~~~~~~vA~~~Pdv~fv~id~~~---~---~~Nv~sv~~-~~~eg~ylaG~~A~~~tk--~~kIGfVgg~~~p~ 162 (356)
T 3s99_A 93 TS-FGYMDPTVKVAKKFPDVKFEHATGYK---T---ADNMSAYNA-RFYEGRYVQGVIAAKMSK--KGIAGYIGSVPVPE 162 (356)
T ss_dssp CS-GGGHHHHHHHHTTCTTSEEEEESCCC---C---BTTEEEEEE-CHHHHHHHHHHHHHHHCS--SCEEEEEECCCCHH
T ss_pred CC-HHHHHHHHHHHHHCCCCEEEEEeccc---c---CCcEEEEEe-chhHHHHHHHHHHHHhcC--CCEEEEECCCccHH
Confidence 64 44556677777775 78888653321 1 133333222 2334444444 3333 47999997432 22
Q ss_pred ccchHHHHHHHHhhcceEEEEEEecCCCCCCChhHHHHHHHHHHhCCceEEEEEcChhhHHHHHHHHHHcCc
Q 002364 177 GRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGM 248 (930)
Q Consensus 177 g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~~~~~a~~~g~ 248 (930)
.......+.+.++..+..+.....+... -.+...-......+.+.++|+|+.+.+.. -++++|++.|.
T Consensus 163 v~~~~~GF~~G~k~~np~i~v~~~~~g~-~~d~~kg~~~a~~l~~~G~DvIf~~~d~~---Gv~~aa~e~Gv 230 (356)
T 3s99_A 163 VVQGINSFMLGAQSVNPDFRVKVIWVNS-WFDPGKEADAAKALIDQGVDIITQHTDST---AAIQVAHDRGI 230 (356)
T ss_dssp HHHHHHHHHHHHHTTCTTCEEEEEECSS-SCCHHHHHHHHHHHHHTTCSEEEESSSSS---HHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEECCC-CCChHHHHHHHHHHHhCCCcEEEECCCch---HHHHHHHHcCC
Confidence 3344677888887765443322222211 01233344455566667899888776654 57889998774
No 152
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=97.18 E-value=0.016 Score=62.41 Aligned_cols=201 Identities=9% Similarity=0.029 Sum_probs=116.5
Q ss_pred ceEEEEEEeeCC-CcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCC-hHHHHHHHHHHHhcCcEEEE--cCCC
Q 002364 30 AVVNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCS-GFIGMVEALRFMETDIVAII--GPQC 105 (930)
Q Consensus 30 ~~i~IG~i~~~s-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~l~~~D~~~~-~~~a~~~a~~li~~~v~aii--Gp~~ 105 (930)
.+.+||++.|.- .++-.....+++.+.++ .|+++.+ .++..+ +.........++.++|.+|| +|..
T Consensus 60 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~--------~g~~~~~--~~~~~~~~~~~~~~l~~l~~~~vdGiIi~~~~~ 129 (349)
T 1jye_A 60 QSLLIGVATSSLALHAPSQIVAAILSRADQ--------LGASVVV--SMVERSGVEACKTAVHNLLAQRVSGLIINYPLD 129 (349)
T ss_dssp --CEEEEEESCTTSHHHHHHHHHHHHHHHH--------TTCEEEE--EECCSSSHHHHHHHHHHHHTTTCSCEEEESCCC
T ss_pred CCCEEEEEeCCCCcccHHHHHHHHHHHHHH--------cCCEEEE--EeCCCCcHHHHHHHHHHHHHCCCCEEEEecCCC
Confidence 457899999853 33323444555544443 2566655 343332 34434455566777777765 4543
Q ss_pred hhHHHHHHHhhccCCCcEEecccCCCCCCCCCCCceEeecCCchHHHHHHHHHHHhcCccEEEEEEEcCc--cccchHHH
Q 002364 106 STVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNE--YGRNGVSA 183 (930)
Q Consensus 106 s~~~~~v~~~~~~~~iP~is~~a~~~~l~~~~~p~~~r~~p~~~~~~~ai~~~l~~~~w~~v~ii~~d~~--~g~~~~~~ 183 (930)
... .+...+...++|+|...... ....+ .+..++..-+...+++|...|.++++++..+.. ..+.-.+.
T Consensus 130 ~~~--~~~~~~~~~~iPvV~i~~~~----~~~~~---~V~~d~~~~~~~a~~~L~~~G~~~I~~i~g~~~~~~~~~R~~G 200 (349)
T 1jye_A 130 DQD--AIAVEAACTNVPALFLDVSD----QTPIN---SIIFSHEDGTRLGVEHLVALGHQQIALLAGPLSSVSARLRLAG 200 (349)
T ss_dssp HHH--HHHHHHHTTTSCEEESSSCT----TSSSC---EEEECHHHHHHHHHHHHHHHTCCSEEEEECCTTSHHHHHHHHH
T ss_pred Chh--HHHHHHhhCCCCEEEEcccC----CCCCC---EEEEchHHHHHHHHHHHHHCCCCEEEEEeCCCCCccHHHHHHH
Confidence 322 22334456799999865321 11222 345566666777788887789999999985432 23455678
Q ss_pred HHHHHhhcceEEEEEEecCCCCCCChhHHHHHHHHHHhC--CceEEEEEcChhhHHHHHHHHHHcCcccCCeE
Q 002364 184 LNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALM--ESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYV 254 (930)
Q Consensus 184 l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viil~~~~~~~~~~~~~a~~~g~~~~~~~ 254 (930)
+.+++++.|+.+.... ... .+..+-...+.++.+. .+++|+. .+...+..+++++++.|+..++-+
T Consensus 201 f~~al~~~gi~~~~~~--~~~--~~~~~~~~~~~~ll~~~~~~~ai~~-~nD~~A~g~~~al~~~G~~vP~di 268 (349)
T 1jye_A 201 WHKYLTRNQIQPIAER--EGD--WSAMSGFQQTMQMLNEGIVPTAMLV-ANDQMALGAMRAITESGLRVGADI 268 (349)
T ss_dssp HHHHHHHTTCCCSEEE--ECC--SSHHHHHHHHHHHHHTTCCCSEEEE-SSHHHHHHHHHHHHHTTCCBTTTB
T ss_pred HHHHHHHcCCCccccc--cCC--CChHHHHHHHHHHHhCCCCCCEEEE-CChHHHHHHHHHHHHcCCCCCCcE
Confidence 8999999887543221 111 1233333344444333 4666654 566678889999999998655433
No 153
>2qpq_A Protein BUG27; alpha/beta domain, venus flytrap, transport protein; HET: CIT; 1.92A {Bordetella pertussis}
Probab=97.18 E-value=0.0028 Score=66.53 Aligned_cols=121 Identities=12% Similarity=0.135 Sum_probs=79.6
Q ss_pred CCCCChHHhhhC------CCCeEEEe-CchHH---HHHHHhhccccccceecCCHHHHHHHHhcCCCCCceEEEEecchh
Q 002364 680 SPINGIESLRKS------DDPIGYQE-GSFAE---YYLSQELNISKSRLVALRTPEDYAKALKDGPGKGGVAAVVDERPY 749 (930)
Q Consensus 680 ~~i~s~~dL~~~------~~~v~~~~-~s~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~i~~~~~ 749 (930)
.+++|++||... ...+|... |+..+ ..+.+..+.. ...++|....+.+.+|.. |++|+++.....
T Consensus 112 s~~~sl~dL~~~ak~~p~~~~~g~~g~Gs~~hl~~~~l~~~~G~~-~~~Vpy~g~~~a~~al~~----G~vD~~~~~~~~ 186 (301)
T 2qpq_A 112 SKYKTLGELMAAAKQTNTQVTYGSCGNGTPQHLAGELLNVSAKTH-MVHVPYKGCGPALNDVLG----SQIGLAVVTASS 186 (301)
T ss_dssp CSCCSHHHHHHHTCSSSCCCEEEESSTTSHHHHHHHHHHHHHTCC-CEEEECSSHHHHHHHHHT----TSSSCEEEEHHH
T ss_pred CCCCCHHHHHHHHHhCCCceEEecCCCCcHHHHHHHHHHHHhCCC-eEEeccCChHHHHHHHHC----CCccEEEEcHHH
Confidence 589999999741 12345442 44322 2233344443 335688999999999999 999999887766
Q ss_pred HHHHHhcCccEEEe---Cc-c---------c---------cccceeeeeCCCCc--chHHHHHHHHhhhhccchHHHHHH
Q 002364 750 VELFLSSQCSFRIV---GQ-E---------F---------TKSGWGFAFPRDSP--LAVDLSSAILELAENGDLQRIHDK 805 (930)
Q Consensus 750 ~~~~~~~~~~l~~~---~~-~---------~---------~~~~~~~~~~k~sp--l~~~i~~~i~~l~e~G~~~~~~~~ 805 (930)
...+.+. .+++.+ .+ . + ....++++.|++-| ....+++++.++.+++.+++..++
T Consensus 187 ~~~~i~~-g~lr~Lav~~~~r~~~~pdvPt~~e~G~~~~~~~~w~gl~ap~g~p~~vv~~l~~al~~~~~~~~~~~~~~~ 265 (301)
T 2qpq_A 187 AIPFIKA-GKLQALAVTSKERSALLPEVPTVAEQGVAGYELNQWHGLLVPGATPMAVRQKLYDGIAKVMQRDDVQKKLAD 265 (301)
T ss_dssp HHHHHHT-TSEEEEEECSSSCCTTCTTSCBSGGGTCTTCCCEEEEEEEEETTCCHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHhc-CCeEEEEEcCCccccccCCCCChHHhCCCceEEEeEEEEEecCCCCHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 5444443 233332 11 0 0 01136788999976 999999999999999988877666
Q ss_pred h
Q 002364 806 W 806 (930)
Q Consensus 806 w 806 (930)
+
T Consensus 266 ~ 266 (301)
T 2qpq_A 266 L 266 (301)
T ss_dssp H
T ss_pred C
Confidence 5
No 154
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=97.08 E-value=0.00075 Score=71.35 Aligned_cols=203 Identities=12% Similarity=0.074 Sum_probs=126.2
Q ss_pred CceEEEEEEeeCC-Ccchh-hHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEc-CCC
Q 002364 29 PAVVNVGALFTLD-STIGR-VAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIG-PQC 105 (930)
Q Consensus 29 ~~~i~IG~i~~~s-~~~g~-~~~~a~~~Av~~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiG-p~~ 105 (930)
..+-+||+++|.. ..+-. ....+++-+.++. |+++. +.++..++.........++.++|.+||- |..
T Consensus 11 ~~s~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~ 80 (301)
T 3miz_A 11 SRSNTFGIITDYVSTTPYSVDIVRGIQDWANAN--------GKTIL--IANTGGSSEREVEIWKMFQSHRIDGVLYVTMY 80 (301)
T ss_dssp -CCCEEEEEESSTTTCCSCHHHHHHHHHHHHHT--------TCEEE--EEECTTCHHHHHHHHHHHHHTTCSEEEEEEEE
T ss_pred CCCCEEEEEeCCCcCcccHHHHHHHHHHHHHHC--------CCEEE--EEeCCCChHHHHHHHHHHHhCCCCEEEEecCC
Confidence 3467899999965 23333 6677777666653 55554 4566667776666677777778887763 222
Q ss_pred hhHHHHHHHhhccCCCcEEecccCCCCCCCCCCCceEeecCCchHHHHHHHHHHHhcCccEEEEEEEcCc--cccchHHH
Q 002364 106 STVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNE--YGRNGVSA 183 (930)
Q Consensus 106 s~~~~~v~~~~~~~~iP~is~~a~~~~l~~~~~p~~~r~~p~~~~~~~ai~~~l~~~~w~~v~ii~~d~~--~g~~~~~~ 183 (930)
... ....+...++|+|......+.. +.+..+..++...+..++++|...|-++++++..... ....-.+.
T Consensus 81 ~~~---~~~~~~~~~iPvV~~~~~~~~~-----~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~G 152 (301)
T 3miz_A 81 RRI---VDPESGDVSIPTVMINCRPQTR-----ELLPSIEPDDYQGARDLTRYLLERGHRRIGYIRLNPILLGAELRLDA 152 (301)
T ss_dssp EEE---CCCCCTTCCCCEEEEEEECSST-----TSSCEEEECHHHHHHHHHHHHHTTTCCSEEEEECCTTSHHHHHHHHH
T ss_pred ccH---HHHHHHhCCCCEEEECCCCCCC-----CCCCEEeeChHHHHHHHHHHHHHcCCCeEEEEecCccchhHHHHHHH
Confidence 222 3455667899999875443211 0233456777888888999999999999999985433 34455788
Q ss_pred HHHHHhhcceEEE--EEEec---CCCCCCChhHHHHHHHHHHhC--CceEEEEEcChhhHHHHHHHHHHcCcccCC
Q 002364 184 LNDKLAERRCRIS--YKSGI---PPESGVNTGYVMDLLVKVALM--ESRVIVLHVSPSLGFQVFSVAKYLGMMGNG 252 (930)
Q Consensus 184 l~~~l~~~g~~v~--~~~~~---~~~~~~~~~~~~~~l~~l~~~--~~~viil~~~~~~~~~~~~~a~~~g~~~~~ 252 (930)
+.+++++.|+.+. ....- ... .........+.++.+. .+++|+ +.+...+..+++++++.|+..++
T Consensus 153 f~~al~~~g~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~A~g~~~al~~~g~~vP~ 225 (301)
T 3miz_A 153 FRRTTSEFGLTENDLSISLGMDGPVG--AENNYVFAAATEMLKQDDRPTAIM-SGNDEMAIQIYIAAMALGLRIPQ 225 (301)
T ss_dssp HHHHHHHHTCCGGGEEEEECEESSTT--SCEECHHHHHHHHHTSTTCCSEEE-ESSHHHHHHHHHHHHTTTCCHHH
T ss_pred HHHHHHHcCCCCCcceEEEcCCCCcC--ccccHHHHHHHHHHcCCCCCcEEE-ECCHHHHHHHHHHHHHcCCCCCC
Confidence 8999998886532 11111 111 1111111334444333 466665 45666788899999999986443
No 155
>2hqb_A Transcriptional activator of COMK gene; berkeley structure genomics center target 1957B, structural genomics, PSI; 2.70A {Bacillus halodurans}
Probab=97.00 E-value=0.089 Score=55.00 Aligned_cols=195 Identities=14% Similarity=0.058 Sum_probs=108.7
Q ss_pred ceEEEEEEeeC--CC-cchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCh
Q 002364 30 AVVNVGALFTL--DS-TIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCS 106 (930)
Q Consensus 30 ~~i~IG~i~~~--s~-~~g~~~~~a~~~Av~~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~s 106 (930)
.+.+||+++|- +. ++-.....+++.+.++. |+++. +.++..++.........++++++.+||.....
T Consensus 4 ~~~~Ig~v~~~~~~d~~f~~~~~~gi~~~~~~~--------g~~~~--~~~~~~~~~~~~~~l~~l~~~~vdgIi~~~~~ 73 (296)
T 2hqb_A 4 GGGMVGLLVEDTIDDQGWNRKAYEGLLNIHSNL--------DVDVV--LEEGVNSEQKAHRRIKELVDGGVNLIFGHGHA 73 (296)
T ss_dssp --CEEEEECCCC----CCTHHHHHHHHHHHHHS--------CCEEE--EECCCCSHHHHHHHHHHHHHTTCCEEEECSTH
T ss_pred CCcEEEEEECCCCCCCcHHHHHHHHHHHHHHHh--------CCeEE--EEeCCCCHHHHHHHHHHHHHCCCCEEEEcCHh
Confidence 35789999973 22 44445556666555542 45543 44554444444455667777799999975433
Q ss_pred hHHHHHHHhhccC-CCcEEecccCCCCCCCCCCCceEeecCCchHHHHHHH-HHHHh-cCccEEEEEEEcCccccchHHH
Q 002364 107 TVAHIVSYVSNEL-QVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVA-EMVSY-YGWNAVSVIFVDNEYGRNGVSA 183 (930)
Q Consensus 107 ~~~~~v~~~~~~~-~iP~is~~a~~~~l~~~~~p~~~r~~p~~~~~~~ai~-~~l~~-~~w~~v~ii~~d~~~g~~~~~~ 183 (930)
...++..++..+ ++|++...... .. +.+-....+ ..++..++ .++.+ .+-+++++|...... . ..+.
T Consensus 74 -~~~~~~~~~~~~p~~p~v~id~~~---~~---~~~~~v~~d-~~~g~~lag~la~~l~~~~~Ig~i~g~~~~-~-r~~G 143 (296)
T 2hqb_A 74 -FAEYFSTIHNQYPDVHFVSFNGEV---KG---ENITSLHFE-GYAMGYFGGMVAASMSETHKVGVIAAFPWQ-P-EVEG 143 (296)
T ss_dssp -HHHHHHTTTTSCTTSEEEEESCCC---CS---SSEEEEEEC-CHHHHHHHHHHHHHTCSSSEEEEEESCTTC-H-HHHH
T ss_pred -HHHHHHHHHHHCCCCEEEEEecCc---CC---CCEEEEEec-hHHHHHHHHHHHHhhccCCeEEEEcCcCch-h-hHHH
Confidence 233455666544 89998764321 11 233333333 33443333 23333 245899999754322 2 6788
Q ss_pred HHHHHhhcceEEEEEEecCCCCCCChhHHHHHHHHHHhCCceEEEEEcChhhHHHHHHHHHHcC
Q 002364 184 LNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLG 247 (930)
Q Consensus 184 l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~~~~~a~~~g 247 (930)
+++.+++.|.. .....+... -.+...-.....++.+.++++|+. .+...+.-+++++++.|
T Consensus 144 f~~~~~~~~~~-~~~~~~~~~-~~~~~~g~~~a~~ll~~~~daI~~-~~D~~a~Gv~~a~~e~G 204 (296)
T 2hqb_A 144 FVDGAKYMNES-EAFVRYVGE-WTDADKALELFQELQKEQVDVFYP-AGDGYHVPVVEAIKDQG 204 (296)
T ss_dssp HHHHHHHTTCC-EEEEEECSS-SSCHHHHHHHHHHHHTTTCCEEEC-CCTTTHHHHHHHHHHHT
T ss_pred HHHHHHHhCCC-eEEEEeecc-ccCHHHHHHHHHHHHHCCCcEEEE-CCCCCCHHHHHHHHHcC
Confidence 89999988864 322222211 011233334455565567887654 45566777889999987
No 156
>2dvz_A BUGE, putative exported protein; periplamsic binding proteins, carboxylate binding, glutamate, transport protein; HET: GLU; 2.30A {Bordetella pertussis}
Probab=96.97 E-value=0.0051 Score=64.76 Aligned_cols=122 Identities=11% Similarity=0.147 Sum_probs=79.3
Q ss_pred CCCCChHHhhhC------CCCeEEE-eCchHH---HHHHHhhccccccceecCCHHHHHHHHhcCCCCCceEEEEecchh
Q 002364 680 SPINGIESLRKS------DDPIGYQ-EGSFAE---YYLSQELNISKSRLVALRTPEDYAKALKDGPGKGGVAAVVDERPY 749 (930)
Q Consensus 680 ~~i~s~~dL~~~------~~~v~~~-~~s~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~i~~~~~ 749 (930)
.+++|++||... ...+|.. .|+..+ ..+.+..+.. ...++|....+.+.+|.. |++|+++.....
T Consensus 125 s~~~tl~dL~~~ak~~p~~~~~g~~g~Gs~~hl~~~~l~~~~Gi~-~~~Vpy~G~~~a~~al~~----G~vD~~~~~~~~ 199 (314)
T 2dvz_A 125 FPAKDFKGFLEELKKNPGKYSYGSSGTCGVLHLMGESFKMATGTD-IVHVPYKGSGPAVADAVG----GQIELIFDNLPS 199 (314)
T ss_dssp SSCSSHHHHHHHHHTSTTTCEEEESCTTSHHHHHHHHHHHHHTCC-CEEEECSSHHHHHHHHHH----TSSSEEEEEHHH
T ss_pred CCCCCHHHHHHHHHhCCCcEEEeCCCCCcHHHHHHHHHHHHhCCC-eEEcccCCHHHHHHHHHc----CCceEEEEcHHH
Confidence 589999999741 1235544 244222 2333444443 335688888999999999 999999987766
Q ss_pred HHHHHhc-Ccc-EEEeCc-c---------c--------c-ccceeeeeCCCCc--chHHHHHHHHhhhhccchHHHHHHh
Q 002364 750 VELFLSS-QCS-FRIVGQ-E---------F--------T-KSGWGFAFPRDSP--LAVDLSSAILELAENGDLQRIHDKW 806 (930)
Q Consensus 750 ~~~~~~~-~~~-l~~~~~-~---------~--------~-~~~~~~~~~k~sp--l~~~i~~~i~~l~e~G~~~~~~~~w 806 (930)
...+.+. ..+ |-+..+ . + . ...++++.|++-| .+..+++++.++.+++.+++..+++
T Consensus 200 ~~~~i~~g~lr~Lav~~~~r~~~~pdvPt~~e~G~~~~~~~~w~gl~ap~g~p~~vv~~l~~al~~~~~~p~~~~~~~~~ 279 (314)
T 2dvz_A 200 SMPQIQAGKLRAMAIAWPTRIDAIKDVPTFADAGFPVLNQPVWYGLLAPKGTPMDVVNKLRDAAVVALKDPKVIKALDDQ 279 (314)
T ss_dssp HHHHHHTTSSEEEEEESSSCCGGGTTSCBTTTTTCGGGCCCEEEEEEEETTCCHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHcCCEEEEEecCccccccCCCCCCHHhcCCCceEEeEEEEEEEcCCCCHHHHHHHHHHHHHHHcCHHHHHHHHHC
Confidence 5444443 222 222211 0 0 0 1125788999976 9999999999999999887776665
No 157
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=96.66 E-value=0.0018 Score=55.56 Aligned_cols=77 Identities=16% Similarity=0.079 Sum_probs=61.6
Q ss_pred HHHHHHHhhhhhcccCCCCCCCccccchhhhHHHHHHhhhcCc--CcccccchhhhHHHHHHHHHhhhhhhhhhhheeee
Q 002364 597 FVVVGIVVWILEHRINDEFRGPPKRQVITILWFSLSTLFFAHK--ENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILT 674 (930)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~s~s~R~~~~~w~~~~lil~~~Yta~L~s~Lt 674 (930)
+++.+++++.+|+..+ +....++.+++||++.++...|- -.|.+..+|++.++|+++++.+.+...+.+++.++
T Consensus 19 ~~~~a~~~~~~E~~~~----~~~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~l~G~~~~~~~~~~i~~~~~ 94 (103)
T 2k1e_A 19 LEEASKKAVEAERGAP----GAALISYPDAIWWSVETATTVGYGDRYPVTEEGRKVAEQVMKAGIEVFALVTAALATDFV 94 (103)
T ss_dssp HHHHHHHHHHHHTTST----TCCCCCGGGTTTTTTGGGGCCSCCSSCCCSSSCTHHHHHHHHHHHHHHHHTHHHHHTTGG
T ss_pred HHHHHHhhhhhccCCC----CcccccHHHHHHHHHHHHhcccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344666677776543 23345789999999999997763 38999999999999999999999999999999987
Q ss_pred ccc
Q 002364 675 VQQ 677 (930)
Q Consensus 675 ~~~ 677 (930)
...
T Consensus 95 ~~~ 97 (103)
T 2k1e_A 95 RRE 97 (103)
T ss_dssp GHH
T ss_pred HHH
Confidence 654
No 158
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=96.55 E-value=0.02 Score=62.12 Aligned_cols=204 Identities=11% Similarity=0.070 Sum_probs=116.7
Q ss_pred ceEEEEEEeeCCCc--chhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCChh
Q 002364 30 AVVNVGALFTLDST--IGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCST 107 (930)
Q Consensus 30 ~~i~IG~i~~~s~~--~g~~~~~a~~~Av~~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~s~ 107 (930)
.+-.||+++|.... ...+....+..++++.=+ |+.+.+...+...+. .-......+..++|.+||-.....
T Consensus 67 ~s~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~------g~~~~~~~~~~~~~~-~~~~~~~~l~~~~vdGiIi~~~~~ 139 (366)
T 3h5t_A 67 RAGAIGVLLTEDLTYAFEDMASVDFLAGVAQAAG------DTQLTLIPASPASSV-DHVSAQQLVNNAAVDGVVIYSVAK 139 (366)
T ss_dssp -CCEEEEEESSCTTHHHHSHHHHHHHHHHHHHSS------SCEEEEEECCCCTTC-CHHHHHHHHHTCCCSCEEEESCCT
T ss_pred CCCEEEEEecCCccccccCHHHHHHHHHHHHHHh------hCCEEEEEcCCCccH-HHHHHHHHHHhCCCCEEEEecCCC
Confidence 45789999996421 112233333334443311 566666655533321 223334455666777765321111
Q ss_pred HHHHHHHhhccCCCcEEecccCCCCCCCCCCCceEeecCCchHHHHHHHHHHHhcCccEEEEEEEc--------------
Q 002364 108 VAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVD-------------- 173 (930)
Q Consensus 108 ~~~~v~~~~~~~~iP~is~~a~~~~l~~~~~p~~~r~~p~~~~~~~ai~~~l~~~~w~~v~ii~~d-------------- 173 (930)
. ......+...++|+|...... .... +-.+..++..-+..++++|...|-+++++|...
T Consensus 140 ~-~~~~~~l~~~~iPvV~i~~~~---~~~~---~~~V~~D~~~~~~~a~~~L~~~G~r~I~~i~~~~~~~~~~g~~~~~~ 212 (366)
T 3h5t_A 140 G-DPHIDAIRARGLPAVIADQPA---REEG---MPFIAPNNRKAIAPAAQALIDAGHRKIGILSIRLDRANNDGEVTRER 212 (366)
T ss_dssp T-CHHHHHHHHHTCCEEEESSCC---SCTT---CCEEEECHHHHTHHHHHHHHHTTCCSEEEEEECCSSSCCCEECCHHH
T ss_pred C-hHHHHHHHHCCCCEEEECCcc---CCCC---CCEEEeChHHHHHHHHHHHHHCCCCcEEEEecccccccccCcccccc
Confidence 1 233445566799999865422 1122 234567777788888999988999999999832
Q ss_pred -----CccccchHHHHHHHHhhcceEEE---EEEecCCCCCCChhHHHHHHHHHHh--CCceEEEEEcChhhHHHHHHHH
Q 002364 174 -----NEYGRNGVSALNDKLAERRCRIS---YKSGIPPESGVNTGYVMDLLVKVAL--MESRVIVLHVSPSLGFQVFSVA 243 (930)
Q Consensus 174 -----~~~g~~~~~~l~~~l~~~g~~v~---~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~viil~~~~~~~~~~~~~a 243 (930)
......-.+.+++++++.|+.+. ....-. .+...-...+.++.+ ..+++|+. .+...+..+++++
T Consensus 213 ~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~----~~~~~~~~~~~~ll~~~~~~~ai~~-~nD~~A~g~~~al 287 (366)
T 3h5t_A 213 LENAQYQVQRDRVRGAMEVFIEAGIDPGTVPIMECWI----NNRQHNFEVAKELLETHPDLTAVLC-TVDALAFGVLEYL 287 (366)
T ss_dssp HHTCCCTTHHHHHHHHHHHHHHHTCCGGGSCEEEESS----CCHHHHHHHHHHHHHHCTTCCEEEE-SSHHHHHHHHHHH
T ss_pred ccccccchHHHHHHHHHHHHHHCCCCCCcceEEEcCC----CCHHHHHHHHHHHHcCCCCCcEEEE-CCcHHHHHHHHHH
Confidence 22334557889999999887532 111111 123333344555433 34666554 5567788899999
Q ss_pred HHcCcccCC
Q 002364 244 KYLGMMGNG 252 (930)
Q Consensus 244 ~~~g~~~~~ 252 (930)
+++|+..++
T Consensus 288 ~~~G~~vP~ 296 (366)
T 3h5t_A 288 KSVGKSAPA 296 (366)
T ss_dssp HHTTCCTTT
T ss_pred HHcCCCCCC
Confidence 999986544
No 159
>4ddd_A Immunogenic protein; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, immune system; 1.90A {Ehrlichia chaffeensis}
Probab=96.43 E-value=0.0077 Score=64.19 Aligned_cols=62 Identities=23% Similarity=0.247 Sum_probs=43.1
Q ss_pred CCCCChHHhhhCCCCeEEE-eCchHH---HHHHHhhcccccc--ceecCCHHHHHHHHhcCCCCCceEEEEecc
Q 002364 680 SPINGIESLRKSDDPIGYQ-EGSFAE---YYLSQELNISKSR--LVALRTPEDYAKALKDGPGKGGVAAVVDER 747 (930)
Q Consensus 680 ~~i~s~~dL~~~~~~v~~~-~~s~~~---~~l~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~g~~~a~i~~~ 747 (930)
.+|++++||. ++++++. .|+... +.+.+..++.... .+.+.+..+.+.+|.. |++|+++...
T Consensus 136 s~i~sl~DL~--gk~v~~~~~Gs~~~~~~~~~l~~~Gi~~~~v~~v~~~g~~~a~~aL~~----G~vDa~~~~~ 203 (327)
T 4ddd_A 136 SNISVIDDIK--GKRVNIGSPGTGVRVAMLKLLGEKGWTKKDFSVMAELKSSEQAQALCD----NKIDVMVDVI 203 (327)
T ss_dssp SSCCSGGGGT--TSEEECCSTTSHHHHHHHHHHHHHTCCGGGCSEEECCCHHHHHHHHHT----TSCSBEEEEE
T ss_pred CCCCCHHHhC--CCEEecCCCCccHHHHHHHHHHHcCCChHhcchhhcCCHHHHHHHHHc----CCCCEEEEcc
Confidence 4789999997 7788874 455332 2222445554333 3678899999999999 8999888743
No 160
>3qi7_A Putative transcriptional regulator; periplasmic binding protein-like, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.86A {Clostridium difficile}
Probab=96.41 E-value=0.076 Score=56.22 Aligned_cols=220 Identities=11% Similarity=0.009 Sum_probs=126.6
Q ss_pred ceEEEEEEeeCCCcchhhHHHHHHHHHHHHhcCCCCC-----CCCEEEEEEecCCCCh-----HHHHHHHHHHHhc-CcE
Q 002364 30 AVVNVGALFTLDSTIGRVAKIAIEEAVKDVNSNSSIL-----HGTKLNITMQSSNCSG-----FIGMVEALRFMET-DIV 98 (930)
Q Consensus 30 ~~i~IG~i~~~s~~~g~~~~~a~~~Av~~iN~~~~il-----~g~~l~l~~~D~~~~~-----~~a~~~a~~li~~-~v~ 98 (930)
.+.+||++...-+ ......++++..+++.|..+... ....+.+++..+-.++ ..++....++... ++.
T Consensus 11 ~~~~igi~t~t~s-~se~t~~~a~~~i~~yg~~pn~~~l~~~~s~~iG~I~~~~~pd~F~se~~ttI~~I~~~a~~~gyk 89 (371)
T 3qi7_A 11 DDFKVAVVTQPLS-ENKVQYNMVEEMAKEYEEENKIDKDKDGQTKVKQTIKHVVLPENFTSNIDSAINKIVKLADDKEVQ 89 (371)
T ss_dssp CCEEEEEEECCTT-TCHHHHHHHHHHHHHHHHHTTCCC-----CCCCEEEEEEECCTTGGGGHHHHHHHHHGGGGCTTEE
T ss_pred CCeEEEEEcCCcC-CCHHHHHHHHHHHHHhCCCcccchhcccccccceEEEEeccCCCchHHHHHHHHHHHHHhhcCCCe
Confidence 4699999887432 24678899999999998744321 0122345544433333 3344455555555 788
Q ss_pred EEEcCCChhHHHHHHHhhccCCCcEEecccCCCCCCC--CCCCceEeecCCchHHHHHHHHHHHhcCccEEEEEEEcCcc
Q 002364 99 AIIGPQCSTVAHIVSYVSNELQVPLLSFGVTDPTLSS--LQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEY 176 (930)
Q Consensus 99 aiiGp~~s~~~~~v~~~~~~~~iP~is~~a~~~~l~~--~~~p~~~r~~p~~~~~~~ai~~~l~~~~w~~v~ii~~d~~~ 176 (930)
+||.-............+.+.+++.|-+.+....-.. ..... +.+..++..-+..+++.|...|-+++++|......
T Consensus 90 ~II~n~~~~~~~~~i~~lkekrvDgIIi~~~~~ed~~~i~~~~d-i~V~~Dn~~Ggy~A~~~Li~~Ghk~Ia~Isgp~~~ 168 (371)
T 3qi7_A 90 AIVVSTDQAGLLPALQKVKEKRPEIITISAPMGDDKNQLSQFVD-VNLGVSAEERGKVLAERSKEMGAKAFIHYASTDDL 168 (371)
T ss_dssp EEEEECSSCCCHHHHHHHHHHCTTSEEEESSCCSCHHHHHHHSS-EEEECCHHHHHHHHHHHHHHTTCSCEEEEEETTGG
T ss_pred EEEEECCCcchHHHHHHHHhcCCCEEEEeccccccchhhcccCc-eEEEeChHHHHHHHHHHHHHCCCCEEEEEeccccc
Confidence 8776444332344455666666665543332111100 00111 24555666667777789999999999999864432
Q ss_pred ----ccchHHHHHHHHhhcceEEEEEEecCCCCCCChhHHHHHHHH-----HHhCCceEEEEEcChhhHHHHHHHHHHcC
Q 002364 177 ----GRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVK-----VALMESRVIVLHVSPSLGFQVFSVAKYLG 247 (930)
Q Consensus 177 ----g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~-----l~~~~~~viil~~~~~~~~~~~~~a~~~g 247 (930)
...-.+.+++++++.|+.+.....-.+............|.+ +.+.+..--|++++...|..+++++++.|
T Consensus 169 ~~~~~~~R~~Gyk~Al~e~Gi~~~~~~~~d~t~e~G~~~a~~lL~~~~~~~~~~~~~~TAIFatND~mAiG~ikal~e~G 248 (371)
T 3qi7_A 169 KDVNIAKRLEMIKETCKNIGLPFVQVNTPNINTEEDKNKVKQFLNEDIEKQVKKYGKDINVFGVNEYMDEVILTKALELK 248 (371)
T ss_dssp GSHHHHHHHHHHHHHHHHTTCCEEEEEECCCSSTHHHHHHHHHHHHHHHHHHHHHCSCCEEEESSHHHHHHHHHHHHHHC
T ss_pred cchhHHHHHHHHHHHHHHcCCCceeecCCCCchHHHHHHHHHHHhccccchhhccCCCcEEEECCHHHHHHHHHHHHHcC
Confidence 223467799999999998765432222200011122222221 12223324566778889999999999999
Q ss_pred cccC
Q 002364 248 MMGN 251 (930)
Q Consensus 248 ~~~~ 251 (930)
...|
T Consensus 249 i~VP 252 (371)
T 3qi7_A 249 YIVA 252 (371)
T ss_dssp CBBC
T ss_pred CccC
Confidence 7543
No 161
>2x7q_A Ca3427, possible thiamine biosynthesis enzyme; unknown function; 2.00A {Candida albicans} PDB: 2x7p_A
Probab=96.37 E-value=0.014 Score=62.10 Aligned_cols=108 Identities=17% Similarity=0.229 Sum_probs=61.6
Q ss_pred CCCCChHHhhhCCCCeEEEe-CchHHH---HHHHhhcccc-ccceecCCHHHHHHHHhcCCCCC----ceEEEEecchhH
Q 002364 680 SPINGIESLRKSDDPIGYQE-GSFAEY---YLSQELNISK-SRLVALRTPEDYAKALKDGPGKG----GVAAVVDERPYV 750 (930)
Q Consensus 680 ~~i~s~~dL~~~~~~v~~~~-~s~~~~---~l~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~g----~~~a~i~~~~~~ 750 (930)
++|++++|| ++||+.. |+.... .+.+..+++. .+++.+.+..+...++.+ | ++||++.+....
T Consensus 110 ~~i~s~~DL----K~i~~~~~gs~~~~~~~~l~~~~Gl~~dv~~v~~~~~~~~~~al~~----G~~~~~vDa~~~ep~~~ 181 (321)
T 2x7q_A 110 DDVTDAKQL----KRIGVSRIGSGSYVMSFVLAHQLGVPSFDQFQVLSNFKNLRDSVNL----KDGVEGSDAFMWEYFTS 181 (321)
T ss_dssp TTCSSGGGC----CEEEESSTTSHHHHHHHHHHHHHTSCCCCEEEECCSHHHHHHHHTT----CTTSCCCSEEEEEHHHH
T ss_pred CCCCChHHc----ceEEeeCCCcHHHHHHHHHHHhcCCCcceEEEEcCChHHHHHHHHc----CCCccceEEEEecCccc
Confidence 379999999 5799876 554322 2223344432 355667778889999998 8 899987654333
Q ss_pred HHHHhcCccEEEeCccccccc-eeeeeCCC----Cc-----chHHHHHHHHhhhhc
Q 002364 751 ELFLSSQCSFRIVGQEFTKSG-WGFAFPRD----SP-----LAVDLSSAILELAEN 796 (930)
Q Consensus 751 ~~~~~~~~~l~~~~~~~~~~~-~~~~~~k~----sp-----l~~~i~~~i~~l~e~ 796 (930)
..... ...+..+.+.....+ .+++++++ .| +.+.+.+++.++.++
T Consensus 182 ~~~~~-~g~~~~~~d~~~~~~~~~l~~~~~~~~~~p~~v~~~~~a~~~a~~~~~~~ 236 (321)
T 2x7q_A 182 KKYYD-NHEIKQIDQIYTPWSSWVVATSSDSLQAKSDVIKNFIDAVNQGIQYYNEH 236 (321)
T ss_dssp HHHHH-TTSEEEEEEEECSSCSEEEEEEHHHHHHSHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhcc-CCceEEccccCCCCceEEEEEcHHHHhhCHHHHHHHHHHHHHHHHHHHHC
Confidence 33222 223554443332222 35666654 34 344455555555544
No 162
>3jv9_A OXYR, transcriptional regulator, LYSR family; LYSR-type transcriptional regulator, LTTR, redox, structural genomics, OPPF; 2.39A {Neisseria meningitidis}
Probab=96.29 E-value=0.076 Score=52.08 Aligned_cols=194 Identities=13% Similarity=0.102 Sum_probs=116.9
Q ss_pred ceeEEEecCCccccceeeeccCCcceEeeeHHHHHHHHHhCCCcccEEEEecCCCCCCCCHHHHHHHHHcCcccEEEeee
Q 002364 465 KLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGDI 544 (930)
Q Consensus 465 ~~lrv~~~~~~~~~p~~~~~~~~~~~~G~~~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~D~~~~~~ 544 (930)
++||||+.. .. ...+-.+++..+.++.+ .+++.+.. ++...+..+|.+|++|+++...
T Consensus 4 g~l~Ig~~~--~~------------~~~~l~~~l~~~~~~~P-~i~i~i~~-------~~~~~~~~~l~~g~~Dl~i~~~ 61 (219)
T 3jv9_A 4 GAFKLGLIF--TV------------APYLLPKLIVSLRRTAP-KMPLMLEE-------NYTHTLTESLKRGDVDAIIVAE 61 (219)
T ss_dssp CCEEEEEET--TT------------HHHHHHHHHHHHHHHST-TCCEEEEE-------ECHHHHHHHHHHTSSSEEEEES
T ss_pred CcEEEEEcc--hh------------hHHHHHHHHHHHHHHCC-CcEEEEEe-------CCcHHHHHHHHcCCCCEEEEcC
Confidence 568888874 11 12355678888888774 25566554 4588999999999999998654
Q ss_pred eeecCceeeeeecccccccceEEEEeccCCCCCcceeeccCchhHHHHHHHHHHHHHHHhhhhhcccCCCCCCCccccch
Q 002364 545 TIVTNRTKIVDFSQPYAASGLVVVVPFRKLNTGAWAFLRPFSPLMWTVTACFFVVVGIVVWILEHRINDEFRGPPKRQVI 624 (930)
Q Consensus 545 ~~t~~r~~~vdft~p~~~~~~~~lv~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (930)
.... ..+. ..++....+++++++..+..
T Consensus 62 ~~~~---~~~~-~~~l~~~~~~~v~~~~~pl~------------------------------------------------ 89 (219)
T 3jv9_A 62 PFQE---PGIV-TEPLYDEPFFVIVPKGHSFE------------------------------------------------ 89 (219)
T ss_dssp SCCC---TTEE-EEEEEEEEEEEEEETTCGGG------------------------------------------------
T ss_pred CCCC---CCee-EEEeeeceEEEEEeCCCCcc------------------------------------------------
Confidence 3222 2222 35777888899888765210
Q ss_pred hhhHHHHHHhhhcCcCcccccchhhhHHHHHHHHHhhhhhhhhhhheeeecccccCCCCChHHhhhCCCCeEE-EeCchH
Q 002364 625 TILWFSLSTLFFAHKENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLYSPINGIESLRKSDDPIGY-QEGSFA 703 (930)
Q Consensus 625 ~~~~~~~~~l~~~~~~~~~s~s~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~~v~~-~~~s~~ 703 (930)
....-+++||. +.++.. ..+...
T Consensus 90 ------------------------------------------------------~~~~~~~~~L~--~~~~i~~~~~~~~ 113 (219)
T 3jv9_A 90 ------------------------------------------------------ELDAVSPRMLG--EEQVLLLTEGNCM 113 (219)
T ss_dssp ------------------------------------------------------TSSSCCSSTTS--SSCEEEECTTCHH
T ss_pred ------------------------------------------------------cCCCCCHHHhc--CCcEEEecCCccH
Confidence 02334677886 555443 344444
Q ss_pred HHHHHHhhc--------cccccceecCCHHHHHHHHhcCCCCCceEEEEecchhHHHHHhcCccEEEeCc--ccccccee
Q 002364 704 EYYLSQELN--------ISKSRLVALRTPEDYAKALKDGPGKGGVAAVVDERPYVELFLSSQCSFRIVGQ--EFTKSGWG 773 (930)
Q Consensus 704 ~~~l~~~~~--------~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~i~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~ 773 (930)
...+.+.+. .........++.+...+.+.. |...+++-+..... + +..++..+.. ......++
T Consensus 114 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~----g~gi~~~p~~~~~~-~--~~~~l~~~~~~~~~~~~~~~ 186 (219)
T 3jv9_A 114 RDQVLSSCSELAAKQRIQGLTNTLQGSSINTIRHMVAS----GLAISVLPATALTE-N--DHMLFSIIPFEGTPPSRRVV 186 (219)
T ss_dssp HHHHHHHCSTTHHHHHHHTTTSSCEESSHHHHHHHHHH----TSCEEEEEGGGCCT-T--CTTTEEEECCSSSCCEEEEE
T ss_pred HHHHHHHHHhhhhhhccCCCCceEEeCCHHHHHHHHHc----CCcEEehhHHHHHh-c--cCCcEEEEecCCCCcceeEE
Confidence 444433332 223344567889999999998 66666666554443 2 3335555543 33344677
Q ss_pred eeeCCCCcchHHHHHHHHhhhh
Q 002364 774 FAFPRDSPLAVDLSSAILELAE 795 (930)
Q Consensus 774 ~~~~k~spl~~~i~~~i~~l~e 795 (930)
++.+++......+...+..+.+
T Consensus 187 l~~~~~~~~~~~~~~~~~~l~~ 208 (219)
T 3jv9_A 187 LAYRRNFVRPKALSAMKAAIMQ 208 (219)
T ss_dssp EEEETTCSCHHHHHHHHHHHHT
T ss_pred EEEecCccccHHHHHHHHHHHh
Confidence 7888887655555555544443
No 163
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=96.17 E-value=0.0077 Score=53.38 Aligned_cols=74 Identities=18% Similarity=0.179 Sum_probs=59.6
Q ss_pred HHHHHhhhhhcccCCCCCCCccccchhhhHHHHHHhhhcC--cCcccccchhhhHHHHHHHHHhhhhhhhhhhheeeecc
Q 002364 599 VVGIVVWILEHRINDEFRGPPKRQVITILWFSLSTLFFAH--KENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQ 676 (930)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~s~s~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~ 676 (930)
+.+.+.|.+|+..+ ++...++.+++|+++.++...| .-.|.+..+|++.++|+++++.+.+...+.+++.++..
T Consensus 42 ~~a~~~~~~E~~~~----~~~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~Gi~~~~~~~~~i~~~~~~~ 117 (122)
T 2ih3_C 42 AGSYLAVLAERGAP----GAQLITYPRALWWACETATTVAYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGR 117 (122)
T ss_dssp HHHHHHHHHHTTST----TCCCCSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhheeeecCC----CCccCccccchhheeeeeeeeecCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555677776432 2334578999999999999776 33899999999999999999999999999999988654
No 164
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=95.91 E-value=0.015 Score=53.01 Aligned_cols=72 Identities=19% Similarity=0.194 Sum_probs=57.0
Q ss_pred HHHHhhhhhcccCCCCCCCccccchhhhHHHHHHhhhcC--cCcccccchhhhHHHHHHHHHhhhhhhhhhhheeeec
Q 002364 600 VGIVVWILEHRINDEFRGPPKRQVITILWFSLSTLFFAH--KENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTV 675 (930)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~s~s~R~~~~~w~~~~lil~~~Yta~L~s~Lt~ 675 (930)
.+.+++.+++.. .++...++.+++||++.++...| .-.|.+..+|++.++|.++++.+.+...+.+++.+..
T Consensus 22 ~a~~~~~~e~~~----~~~~~~~~~~a~yf~~~T~tTvGyGd~~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~~~~ 95 (139)
T 3eff_K 22 GSYLAVLAERGA----PGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVG 95 (139)
T ss_dssp HHHHHHHTTSSC----TTCCCCCHHHHHHHHHHHHTTCCCSSSCCCSSHHHHHHHHHHHHHHHHHHHHHHHHTTTTTH
T ss_pred HHHHHHHHhcCC----CCcccCCHHHHHHHHheeeecccCCCCcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556665543 22334568899999999998776 3489999999999999999999999999999998854
No 165
>3ho7_A OXYR; beta-alpha-barrels, DNA-binding, transcription, transcriptio regulation; 1.58A {Porphyromonas gingivalis}
Probab=95.90 E-value=0.073 Score=52.85 Aligned_cols=84 Identities=13% Similarity=0.041 Sum_probs=58.8
Q ss_pred CceeEEEecCCccccceeeeccCCcceEeeeHHHHHHHHHhCCCcccEEEEecCCCCCCCCHHHHHHHHHcCcccEEEee
Q 002364 464 GKLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGD 543 (930)
Q Consensus 464 g~~lrv~~~~~~~~~p~~~~~~~~~~~~G~~~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~D~~~~~ 543 (930)
.++||||+.. .. ...+-.+++..+.++.+ .+++.+.. ++...++.+|.+|++|+++..
T Consensus 10 ~g~l~Ig~~~--~~------------~~~~l~~~l~~~~~~~P-~v~i~~~~-------~~~~~~~~~l~~g~~Dl~i~~ 67 (232)
T 3ho7_A 10 TGRLNIAVLP--TI------------APYLLPRVFPIWKKELA-GLEIHVSE-------MQTSRCLASLLSGEIDMAIIA 67 (232)
T ss_dssp CEEEEEEECT--TT------------HHHHHHHHHHHHHHHST-TEEEEEEE-------CCHHHHHHHHHHTSCSEEEES
T ss_pred ceeEEEEecc--cc------------chhhhHHHHHHHHHHCC-CcEEEEEe-------CCHHHHHHHHHcCCCCEEEEc
Confidence 4578998884 11 12356778888888875 35666665 568899999999999999875
Q ss_pred eeeecCceeeeeecccccccceEEEEeccC
Q 002364 544 ITIVTNRTKIVDFSQPYAASGLVVVVPFRK 573 (930)
Q Consensus 544 ~~~t~~r~~~vdft~p~~~~~~~~lv~~~~ 573 (930)
..... ..+. +.++....+++++++..
T Consensus 68 ~~~~~---~~l~-~~~l~~~~~~~v~~~~h 93 (232)
T 3ho7_A 68 SKAET---EGLE-DDLLYYEEFLGYVSRCE 93 (232)
T ss_dssp SCCCC---TTEE-EEEEEEEEEEEEECTTS
T ss_pred CCCCC---CCeE-EEEecccCEEEEEcCCC
Confidence 43322 2222 35777888899888765
No 166
>4ab5_A Transcriptional regulator, LYSR family; transcription factors; 2.51A {Neisseria meningitidis serogroup B} PDB: 4ab6_A
Probab=95.85 E-value=0.094 Score=51.53 Aligned_cols=84 Identities=14% Similarity=0.069 Sum_probs=56.8
Q ss_pred CceeEEEecCCccccceeeeccCCcceEeeeHHHHHHHHHhCCCcccEEEEecCCCCCCCCHHHHHHHHHcCcccEEEee
Q 002364 464 GKLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGD 543 (930)
Q Consensus 464 g~~lrv~~~~~~~~~p~~~~~~~~~~~~G~~~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~D~~~~~ 543 (930)
.++||||+.. .. ...+-.+++..+.++.+ .+++.+.. ++...++.+|.+|++|+++..
T Consensus 7 ~g~l~Ig~~~--~~------------~~~~l~~~l~~f~~~~P-~i~i~i~~-------~~~~~~~~~l~~g~~Di~i~~ 64 (222)
T 4ab5_A 7 AGELRIAVEC--HT------------CFDWLMPAMGEFRPMWP-QVELDIVS-------GFQADPVGLLLQHRADLAIVS 64 (222)
T ss_dssp TEEEEEECCC--TT------------THHHHHHHHHHHHHHST-TEEEEEEC-------CCCSCTHHHHHTTSCSEEEES
T ss_pred cceEEEEEeh--HH------------HHHHHHHHHHHHHHHCC-CcEEEEec-------CCHHHHHHHHHcCCcCEEEec
Confidence 4578998884 11 12455678888888875 35566654 456788999999999999874
Q ss_pred eeeecCceeeeeecccccccceEEEEeccC
Q 002364 544 ITIVTNRTKIVDFSQPYAASGLVVVVPFRK 573 (930)
Q Consensus 544 ~~~t~~r~~~vdft~p~~~~~~~~lv~~~~ 573 (930)
..... ..+. ..++....+++++++..
T Consensus 65 ~~~~~---~~~~-~~~l~~~~~~~v~~~~~ 90 (222)
T 4ab5_A 65 EAEKQ---NGIS-FQPLFAYEMVGICAPDH 90 (222)
T ss_dssp CCCCC---TTEE-EEEEEEEEEEEEECTTS
T ss_pred CCCCc---CCeE-EEEeecCcEEEEecCCC
Confidence 33222 2232 45777888888888765
No 167
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=95.84 E-value=0.013 Score=54.11 Aligned_cols=75 Identities=15% Similarity=0.158 Sum_probs=60.1
Q ss_pred HHHHHhhhhhcccCCCCCCCccccchhhhHHHHHHhhhcC--cCcccccchhhhHHHHHHHHHhhhhhhhhhhheeeecc
Q 002364 599 VVGIVVWILEHRINDEFRGPPKRQVITILWFSLSTLFFAH--KENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQ 676 (930)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~s~s~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~ 676 (930)
+.+++++.+|+..+ ++...++.+++||++.++...| .-.|.+..+|++.++|.++++.+.+..++.+++.++..
T Consensus 65 ~~a~~~~~~E~~~~----~~~~~s~~~a~y~s~vTltTVGYGDi~P~t~~gr~~~~~~~l~Gv~~~a~~~~~i~~~~~~~ 140 (155)
T 2a9h_A 65 AGSYLAVLAERGAP----GAALISYPDALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSYGLVFAAVATWFVGR 140 (155)
T ss_dssp HHHHHHHHHHTTSS----CSSTTSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHhccCC----CCccCcccceeheeeeeeecccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555677775432 3334578999999999999776 33899999999999999999999999999999998765
Q ss_pred c
Q 002364 677 Q 677 (930)
Q Consensus 677 ~ 677 (930)
.
T Consensus 141 ~ 141 (155)
T 2a9h_A 141 E 141 (155)
T ss_dssp C
T ss_pred H
Confidence 4
No 168
>3oxn_A Putative transcriptional regulator, LYSR family; structural genomics, PSI-2, protein structure initiative; 2.70A {Vibrio parahaemolyticus}
Probab=95.83 E-value=0.15 Score=50.94 Aligned_cols=84 Identities=14% Similarity=0.150 Sum_probs=58.5
Q ss_pred CceeEEEecCCccccceeeeccCCcceEeeeHHHHHHHHHhCCCcccEEEEecCCCCCCCCHHHHHHHHHcCcccEEEee
Q 002364 464 GKLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGD 543 (930)
Q Consensus 464 g~~lrv~~~~~~~~~p~~~~~~~~~~~~G~~~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~D~~~~~ 543 (930)
.+.||||+.. .. ...+-..++..+.++.+ .+++.+.. ++...++.+|.+|++|+++..
T Consensus 18 ~g~l~Ig~~~--~~------------~~~~l~~~l~~f~~~~P-~i~l~~~~-------~~~~~~~~~l~~g~~Dl~i~~ 75 (241)
T 3oxn_A 18 DQTFTIATTD--YA------------MQTILPFALPRIYQEAP-NVSFNFLP-------LQHDRLSDQLTYEGADLAICR 75 (241)
T ss_dssp CCEEEEEECS--HH------------HHHTHHHHHHHHHHHCT-TCEEEEEE-------CCGGGHHHHHHTSCCSEEEEC
T ss_pred CceEEEEech--HH------------HHHHHHHHHHHHHHHCC-CCEEEEEE-------CCcccHHHHHHcCCCCEEEec
Confidence 4679999984 11 12456678888888875 25566655 557899999999999999874
Q ss_pred eeeecCceeeeeecccccccceEEEEeccC
Q 002364 544 ITIVTNRTKIVDFSQPYAASGLVVVVPFRK 573 (930)
Q Consensus 544 ~~~t~~r~~~vdft~p~~~~~~~~lv~~~~ 573 (930)
... ....+. ..++....+++++++..
T Consensus 76 ~~~---~~~~~~-~~~l~~~~~~~v~~~~h 101 (241)
T 3oxn_A 76 PTG---PVEPLR-SEILGRVGVLCLLSKQH 101 (241)
T ss_dssp CSS---CCTTEE-EEEEECCCEEEEEETTS
T ss_pred CCC---CCccce-eEEeecccEEEEEeCCC
Confidence 322 222232 35778889999998765
No 169
>3ixl_A Amdase, arylmalonate decarboxylase; enantioselective decarboxylation, lyase; HET: CME PAC; 1.45A {Bordetella bronchiseptica} PDB: 3ixm_A 2vlb_A 3dg9_A 3ip8_A* 3dtv_A* 3eis_A*
Probab=95.72 E-value=0.15 Score=51.03 Aligned_cols=129 Identities=19% Similarity=0.111 Sum_probs=89.4
Q ss_pred HHHHHHHhcCcEEEEcCCChhHH--------HHHHHhhccCCCcEEecccCCCCCCCCCCCceEeecCCchHHHHHHHHH
Q 002364 87 VEALRFMETDIVAIIGPQCSTVA--------HIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEM 158 (930)
Q Consensus 87 ~~a~~li~~~v~aiiGp~~s~~~--------~~v~~~~~~~~iP~is~~a~~~~l~~~~~p~~~r~~p~~~~~~~ai~~~ 158 (930)
+++..|...++.+|+-+-++... .....+.+..++|+++. +.++++.
T Consensus 57 ~aa~~L~~ag~d~i~~aCtsas~~~G~~~~~~~~~~l~~~~~iPv~~~-------------------------~~A~~~a 111 (240)
T 3ixl_A 57 DHARRLQKQGAAVVSLMCTSLSFYRGAAFNAALTVAMREATGLPCTTM-------------------------STAVLNG 111 (240)
T ss_dssp HHHHHHHHTTEEEEEECCHHHHHTTCHHHHHHHHHHHHHHHSSCEEEH-------------------------HHHHHHH
T ss_pred HHHHHhccCCCCEEEECCcHHHHhcccchHHHHHHHHHhccCCCEECH-------------------------HHHHHHH
Confidence 34555555589998875555443 23344555678998862 5778888
Q ss_pred HHhcCccEEEEEEEcCccccchHHHHHHHHhhcceEEEEEEecCCCC-----CCChhHHHHHHHH-H-HhCCceEEEEEc
Q 002364 159 VSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPES-----GVNTGYVMDLLVK-V-ALMESRVIVLHV 231 (930)
Q Consensus 159 l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~-----~~~~~~~~~~l~~-l-~~~~~~viil~~ 231 (930)
++..|-++|+++.. |.....+.+++.+++.|+++.......... ..+...+...+++ + ...++|.||+.|
T Consensus 112 l~~~g~~rvglltp---y~~~~~~~~~~~l~~~Giev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~adaivL~C 188 (240)
T 3ixl_A 112 LRALGVRRVALATA---YIDDVNERLAAFLAEESLVPTGCRSLGITGVEAMARVDTATLVDLCVRAFEAAPDSDGILLSS 188 (240)
T ss_dssp HHHTTCSEEEEEES---SCHHHHHHHHHHHHHTTCEEEEEEECCCCCHHHHHTCCHHHHHHHHHHHHHTSTTCSEEEEEC
T ss_pred HHHhCCCEEEEEeC---ChHHHHHHHHHHHHHCCCEEeccccCCCCCcchhhcCCHHHHHHHHHHHhhcCCCCCEEEEeC
Confidence 88999999999964 777778889999999999987655433221 1235567777888 7 667899999988
Q ss_pred ChhhHHHHHHHH
Q 002364 232 SPSLGFQVFSVA 243 (930)
Q Consensus 232 ~~~~~~~~~~~a 243 (930)
..-....++.+.
T Consensus 189 T~l~~l~~i~~l 200 (240)
T 3ixl_A 189 GGLLTLDAIPEV 200 (240)
T ss_dssp TTSCCTTHHHHH
T ss_pred CCCchhhhHHHH
Confidence 765554444433
No 170
>2g29_A Nitrate transport protein NRTA; solute-binding protein, alpha-beta protein; 1.50A {Synechocystis SP}
Probab=95.66 E-value=0.04 Score=60.91 Aligned_cols=103 Identities=12% Similarity=0.193 Sum_probs=61.0
Q ss_pred HHhhhCCCCeEEE-eCchHHHHHH---Hhhcccc---ccceecCCHHHHHHHHhcCCCCCceEEEEecchhHHHHHhcCc
Q 002364 686 ESLRKSDDPIGYQ-EGSFAEYYLS---QELNISK---SRLVALRTPEDYAKALKDGPGKGGVAAVVDERPYVELFLSSQC 758 (930)
Q Consensus 686 ~dL~~~~~~v~~~-~~s~~~~~l~---~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~g~~~a~i~~~~~~~~~~~~~~ 758 (930)
+||. |++|++. .++....++. +..++.. .+++.+ ...+...+|.+ |++|+++...++......+..
T Consensus 151 ~dLk--Gk~iav~~~gs~~~~~l~~~L~~~Gl~~~~dv~~v~~-~~~~~~~aL~~----G~vDa~~~~eP~~~~~~~~g~ 223 (417)
T 2g29_A 151 AKVT--DPKVAMTFPGGTHDMWIRYWLAAGGMEPGKDFSTIVV-PPAQMVANVKV----NAMESFCVGEPWPLQTVNQGV 223 (417)
T ss_dssp HTSS--SCEEEESSTTSHHHHHHHHHHHHTTCCBTTTBEEEEC-CGGGHHHHHHT----TSCSEEEEETTHHHHHHHHTS
T ss_pred HhcC--CCEEEEeCCCCHHHHHHHHHHHHcCCCCCCceEEEEC-CHHHHHHHHHc----CCCCEEEeCCCHHHHHHHcCC
Confidence 6776 8899997 4664433332 2334433 245555 45788999999 899999988777666555432
Q ss_pred -cEEEe-Cccccccc-eeeeeCCC----Cc-----chHHHHHHHHhhhh
Q 002364 759 -SFRIV-GQEFTKSG-WGFAFPRD----SP-----LAVDLSSAILELAE 795 (930)
Q Consensus 759 -~l~~~-~~~~~~~~-~~~~~~k~----sp-----l~~~i~~~i~~l~e 795 (930)
+.... .+.....+ .+++++++ .| +...+.++..++.+
T Consensus 224 ~~~~~~~~~~~~~~p~~~l~~~~~~~~~~p~~~~~~~~A~~~A~~~~~~ 272 (417)
T 2g29_A 224 GYQALTTGQLWKDHPEKAFGMRADWVDQNPKAAKALLMAVMEAQQWCDQ 272 (417)
T ss_dssp CEEEEEGGGTBTTCBCEEEEEEHHHHHHCHHHHHHHHHHHHHHHHHHHC
T ss_pred CEEEEechhhcCCCceEEEEECHHHHHHCHHHHHHHHHHHHHHHHHHhC
Confidence 22222 23222223 46677654 44 44456666666665
No 171
>1zbm_A Hypothetical protein AF1704; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.30A {Archaeoglobus fulgidus} SCOP: c.94.1.1
Probab=95.37 E-value=0.046 Score=56.65 Aligned_cols=100 Identities=17% Similarity=0.022 Sum_probs=56.9
Q ss_pred HHhhhCCCCeEEE-eCchHHHHHHHhhccccccceecCCHHHHHHHHhcCCCCCceEEEEec-chhHHHHHhcCccEEEe
Q 002364 686 ESLRKSDDPIGYQ-EGSFAEYYLSQELNISKSRLVALRTPEDYAKALKDGPGKGGVAAVVDE-RPYVELFLSSQCSFRIV 763 (930)
Q Consensus 686 ~dL~~~~~~v~~~-~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~i~~-~~~~~~~~~~~~~l~~~ 763 (930)
+||. |++||+. .++....++...+ ...+++ +.+..+...++.+ |++||++.. .+... +... ++..+
T Consensus 99 ~DLk--GK~Iav~~~~s~~~~ll~~~l--~~~~~~-~~~~~~~~~al~~----G~vDa~~~~~~~~~~-~~~~--g~~~~ 166 (280)
T 1zbm_A 99 ISLD--GKRIAVPGRYTTANLLLKLAV--EDFEPV-EMPFDRIIQAVLD----EEVDAGLLIHEGQIT-YADY--GLKCV 166 (280)
T ss_dssp CCCT--TCEEEESCTTSHHHHHHHHHC--SSCEEE-ECCGGGHHHHHHT----TSSSEEEECSGGGGT-GGGG--TCEEE
T ss_pred hhcC--CCEEEecCCCcHHHHHHHHHh--ccCceE-ecCHHHHHHHHHc----CCCCEEEEechHHhH-HHhc--CCeEe
Confidence 7786 8999996 4444333343222 122333 3366788999999 899998754 34444 2222 22222
Q ss_pred Cc---c----c-cccc-eeeeeCCC-Cc-chHHHHHHHHhhhhcc
Q 002364 764 GQ---E----F-TKSG-WGFAFPRD-SP-LAVDLSSAILELAENG 797 (930)
Q Consensus 764 ~~---~----~-~~~~-~~~~~~k~-sp-l~~~i~~~i~~l~e~G 797 (930)
.+ . . ...+ .+++++++ .| +.+.|.+++.+..+..
T Consensus 167 ~~~~~~~~~~~g~~~~~~~~~~~~~~~p~~v~~~~~a~~~a~~~~ 211 (280)
T 1zbm_A 167 LDLWDWWSEQVKLPLPLGLNAIRRDLSVEVQEEFLRAMRESIAFA 211 (280)
T ss_dssp EEHHHHHHTTCSSCEEEEEEEEETTSCHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHhhCCCCCeeEEEEcccCCHHHHHHHHHHHHHHHHHH
Confidence 11 0 0 1112 35778888 56 7788888887766544
No 172
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=94.96 E-value=0.051 Score=49.12 Aligned_cols=56 Identities=16% Similarity=0.310 Sum_probs=49.6
Q ss_pred ccchhhhHHHHHHhhhcC--cCcccccchhhhHHHHHHHHHhhhhhhhhhhheeeecc
Q 002364 621 RQVITILWFSLSTLFFAH--KENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQ 676 (930)
Q Consensus 621 ~~~~~~~~~~~~~l~~~~--~~~~~s~s~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~ 676 (930)
.+..+++||++.++..-| .-.|.+..+|++.++|+++++.+.+...+.+++.+...
T Consensus 42 ~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~g~~~~~~~~~~i~~~~~~~ 99 (137)
T 4h33_A 42 NNYPDALWWAIVTATTVGYGDIVPVTPIGRILASIMMLFGIAFIGMITSTITNFFRCK 99 (137)
T ss_dssp CSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTT
T ss_pred CCHHHHHHHHHHHHHcccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357899999999998776 33899999999999999999999999999999988653
No 173
>3fzv_A Probable transcriptional regulator; LYSR, structural genomics, PSI-2, structure initiative; 2.71A {Pseudomonas aeruginosa PA01}
Probab=94.78 E-value=0.41 Score=49.80 Aligned_cols=84 Identities=14% Similarity=0.192 Sum_probs=55.7
Q ss_pred CceeEEEecCCccccceeeeccCCcceEeeeHHHHHHHHHhCCCcccEEEEecCCCCCCCCHHHHHHHHHcCcccEEEee
Q 002364 464 GKLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGD 543 (930)
Q Consensus 464 g~~lrv~~~~~~~~~p~~~~~~~~~~~~G~~~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~D~~~~~ 543 (930)
.++||||+.. .+ ...+-.+++..+.++.+ .+++.+.. ++..+++.+|.+|++|+++..
T Consensus 94 ~g~l~i~~~~--~~------------~~~~l~~~l~~f~~~~P-~i~i~l~~-------~~~~~~~~~l~~g~~Dl~i~~ 151 (306)
T 3fzv_A 94 AGQIDIGCFE--TV------------APLYLPGLIAGFRQAYP-GVEIRIRD-------GEQQELVQGLTSGRFDLAFLY 151 (306)
T ss_dssp CEEEEEEEEG--GG------------HHHHHHHHHHHHHHHCT-TEEEEEEE-------ECHHHHHHHHHHTSCSEEEEC
T ss_pred CceEEEEech--hh------------hHHHHHHHHHHHHHHCC-CeEEEEEe-------CCHHHHHHHHHCCCccEEEEe
Confidence 4579999984 11 12456678888888875 35566654 568899999999999999863
Q ss_pred eeeecCceeeeeeccccc-ccceEEEEeccC
Q 002364 544 ITIVTNRTKIVDFSQPYA-ASGLVVVVPFRK 573 (930)
Q Consensus 544 ~~~t~~r~~~vdft~p~~-~~~~~~lv~~~~ 573 (930)
.... ...+. ..++. ...+++++++..
T Consensus 152 ~~~~---~~~l~-~~~l~~~~~~~~v~~~~~ 178 (306)
T 3fzv_A 152 EHDL---DSTIE-TEPLMPPQRPHALLPEGH 178 (306)
T ss_dssp SSSC---CTTEE-EEESSCCBCCEEEEETTC
T ss_pred cccc---ccccc-eeeeeeccccEEEecCCC
Confidence 2211 12222 34555 677777787665
No 174
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=93.92 E-value=0.0087 Score=56.40 Aligned_cols=58 Identities=22% Similarity=0.223 Sum_probs=51.1
Q ss_pred ccccchhhhHHHHHHhhhcC--cCcccccchhhhHHHHHHHHHhhhhhhhhhhheeeecc
Q 002364 619 PKRQVITILWFSLSTLFFAH--KENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQ 676 (930)
Q Consensus 619 ~~~~~~~~~~~~~~~l~~~~--~~~~~s~s~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~ 676 (930)
...++..++||++.++...| .-.|.+..+|++.++|+++++++.+...+.+++.++..
T Consensus 64 ~~~~~~~a~yf~~~T~tTvGyGDi~P~t~~~r~~~~~~~l~G~~~~~~~~~~i~~~~~~~ 123 (166)
T 3pjs_K 64 QLITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGQ 123 (166)
T ss_dssp CCCSTTTTTTTTHHHHSCCCCSSSCCCSSTTTTTTHHHHHHHHHHHHHHHTTSSSSSSSS
T ss_pred ccCCHHHHHHHHHHHhccccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34568899999999998776 33899999999999999999999999999999999753
No 175
>2ql3_A Probable transcriptional regulator, LYSR family P; APC7314, rhodococcus RHA1, structural genomics, PSI-2; HET: MSE; 2.05A {Rhodococcus SP}
Probab=93.87 E-value=1.5 Score=42.24 Aligned_cols=84 Identities=12% Similarity=0.073 Sum_probs=56.7
Q ss_pred CceeEEEecCCccccceeeeccCCcceEeeeHHHHHHHHHhCCCcccEEEEecCCCCCCCCHHHHHHHHHcCcccEEEee
Q 002364 464 GKLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGD 543 (930)
Q Consensus 464 g~~lrv~~~~~~~~~p~~~~~~~~~~~~G~~~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~D~~~~~ 543 (930)
.++||||+... . ...+-.+++..+.++.+ .+++++.. ++...+..+|.+|++|+++..
T Consensus 4 ~g~l~Ig~~~~--~------------~~~~l~~~l~~f~~~~P-~i~i~l~~-------~~~~~l~~~l~~g~~Dl~i~~ 61 (209)
T 2ql3_A 4 AGPIAVGCYPA--L------------GPTILPSMLYAFTAEYP-RASVEFRE-------DTQNRLRTQLEGGELDVAIVY 61 (209)
T ss_dssp CEEEEEEECGG--G------------TTTTHHHHHHHHHHHCT-TEEEEEEE-------CCHHHHHHHHHTTSCSEEEEE
T ss_pred ceeEEEeechh--h------------hhhhHHHHHHHHHHHCC-CceEEEEE-------CcHHHHHHHHHcCCccEEEEe
Confidence 35789988741 1 12455678889988886 36666665 568899999999999998853
Q ss_pred eeeecCceeeeeecccccccceEEEEeccC
Q 002364 544 ITIVTNRTKIVDFSQPYAASGLVVVVPFRK 573 (930)
Q Consensus 544 ~~~t~~r~~~vdft~p~~~~~~~~lv~~~~ 573 (930)
... ....+. +.++....+++++++..
T Consensus 62 ~~~---~~~~l~-~~~l~~~~~~~v~~~~h 87 (209)
T 2ql3_A 62 DLD---LSPEWQ-TVPLMTREPMVVLGAEH 87 (209)
T ss_dssp SSS---CCTTEE-EEEEEEECCEEEEETTC
T ss_pred cCC---CCCCce-EEEeecCceEEEEeCCC
Confidence 211 112222 35677788888887654
No 176
>1us5_A Putative GLUR0 ligand binding core; receptor, membrane protein, glutamate receptor, L-glutamate; HET: GLU; 1.5A {Thermus thermophilus} SCOP: c.94.1.1 PDB: 1us4_A*
Probab=93.82 E-value=0.28 Score=51.58 Aligned_cols=61 Identities=13% Similarity=0.115 Sum_probs=40.3
Q ss_pred CCCCChHHhhhCCCCeEE-EeCchHHHHH---HHhhccccccc--eecCCHHHHHHHHhcCCCCCceEEEEec
Q 002364 680 SPINGIESLRKSDDPIGY-QEGSFAEYYL---SQELNISKSRL--VALRTPEDYAKALKDGPGKGGVAAVVDE 746 (930)
Q Consensus 680 ~~i~s~~dL~~~~~~v~~-~~~s~~~~~l---~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~g~~~a~i~~ 746 (930)
.++++++||. ++++++ ..|+.....+ .+..+.....+ ..+.+..+.+.++.. |++|+.+..
T Consensus 121 ~~i~sl~dL~--g~~i~~~~~gs~~~~~~~~~l~~~G~~~~~v~~~~~~~~~~~~~al~~----G~vda~~~~ 187 (314)
T 1us5_A 121 AGIRTVADLK--GKRVVVGDVGSGTEQNARQILEAYGLTFDDLGQAIRVSASQGIQLMQD----KRADALFYT 187 (314)
T ss_dssp SSCSSGGGGT--TSEEECCCTTCHHHHHHHHHHHHTTCCGGGSSEEECCCHHHHHHHHHT----TSCSEEEEE
T ss_pred CCCCcHHHhC--CCEeecCCCCchHHHHHHHHHHHcCCCHHHcCceecCCHHHHHHHHHc----CCccEEEEc
Confidence 3688999998 677777 4455433322 23344443333 356678889999998 899988865
No 177
>2y7p_A LYSR-type regulatory protein; transcription regulator, DNA-binding, transcription, transcr factor, transcription regulation; HET: SAL PEU; 1.85A {Burkholderia SP} PDB: 2y7k_A* 2y84_A 2y7w_A 2y7r_A
Probab=93.82 E-value=0.57 Score=45.94 Aligned_cols=84 Identities=11% Similarity=0.114 Sum_probs=58.1
Q ss_pred CceeEEEecCCccccceeeeccCCcceEeeeHHHHHHHHHhCCCcccEEEEecCCCCCCCCHHHHHHHHHcCcccEEEee
Q 002364 464 GKLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGD 543 (930)
Q Consensus 464 g~~lrv~~~~~~~~~p~~~~~~~~~~~~G~~~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~D~~~~~ 543 (930)
.++||||+.. . ....+-..++..+.++.+ .+++.+.. ++...++++|.+|++|+++..
T Consensus 7 ~g~l~Ig~~~---~-----------~~~~~lp~~l~~f~~~~P-~v~l~l~~-------~~~~~l~~~L~~g~iDl~i~~ 64 (218)
T 2y7p_A 7 TRTFNLAMTD---I-----------GEMYFMPPLMEALAQRAP-HIQISTLR-------PNAGNLKEDMESGAVDLALGL 64 (218)
T ss_dssp CCEEEEECCH---H-----------HHHHHHHHHHHHHHHHCT-TCEEEEEC-------CCTTTHHHHHHHTSSCEEEEC
T ss_pred ceEEEEEecH---H-----------HHHHHHHHHHHHHHHHCC-CCEEEEEe-------CCcccHHHHHhCCCceEEEec
Confidence 4678888873 1 012456678888888885 35666664 557789999999999999853
Q ss_pred eeeecCceeeeeecccccccceEEEEeccC
Q 002364 544 ITIVTNRTKIVDFSQPYAASGLVVVVPFRK 573 (930)
Q Consensus 544 ~~~t~~r~~~vdft~p~~~~~~~~lv~~~~ 573 (930)
.. .....+.+ .|+....+++++++..
T Consensus 65 ~~---~~~~~l~~-~~l~~~~~~~v~~~~h 90 (218)
T 2y7p_A 65 LP---ELQTGFFQ-RRLFRHRYVCMFRKDH 90 (218)
T ss_dssp CT---TCCTTEEE-EEEEEECEEEEEETTC
T ss_pred CC---CCCcceeE-EEeeeccEEEEEcCCC
Confidence 21 11223433 5788889999998765
No 178
>1i6a_A OXYR, hydrogen peroxide-inducible genes activator; OXYR regulatory domain, oxidized form, transcription; 2.30A {Escherichia coli} SCOP: c.94.1.1 PDB: 1i69_A
Probab=93.81 E-value=0.15 Score=50.08 Aligned_cols=84 Identities=13% Similarity=0.142 Sum_probs=58.0
Q ss_pred CceeEEEecCCccccceeeeccCCcceEeeeHHHHHHHHHhCCCcccEEEEecCCCCCCCCHHHHHHHHHcCcccEEEee
Q 002364 464 GKLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGD 543 (930)
Q Consensus 464 g~~lrv~~~~~~~~~p~~~~~~~~~~~~G~~~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~D~~~~~ 543 (930)
.++||||+... . ...+-.+++..+.++.+ .+++++.. ++...++++|.+|++|+++..
T Consensus 4 ~g~lrIg~~~~--~------------~~~~l~~~l~~f~~~~P-~v~l~l~~-------~~~~~~~~~l~~g~~Dl~i~~ 61 (219)
T 1i6a_A 4 SGPLHIGLIPT--V------------GPYLLPHIIPMLHQTFP-KLEMYLHE-------AQTHQLLAQLDSGKLDAVILA 61 (219)
T ss_dssp CEEEEEEECTT--T------------HHHHHHHHHHHHHHHCT-TEEEEEEE-------CCHHHHHHHHHHTSCSEEEEE
T ss_pred ceEEEEEeccc--h------------hhhhhhHHHHHHHHHCC-CeEEEEEE-------CChHHHHHHHHcCCeeEEEec
Confidence 35789988841 1 12456778888888886 46677665 568999999999999998853
Q ss_pred eeeecCceeeeeecccccccceEEEEeccC
Q 002364 544 ITIVTNRTKIVDFSQPYAASGLVVVVPFRK 573 (930)
Q Consensus 544 ~~~t~~r~~~vdft~p~~~~~~~~lv~~~~ 573 (930)
.... ...+. +.|+....+++++++..
T Consensus 62 ~~~~---~~~l~-~~~l~~~~~~~v~~~~h 87 (219)
T 1i6a_A 62 LVKE---SEAFI-EVPLFDEPMLLAIYEDH 87 (219)
T ss_dssp CCGG---GTTSE-EEEEEEEEEEEEEETTS
T ss_pred CCCC---CCCcc-eeeeecccEEEEEcCCC
Confidence 2211 12222 35777888888888765
No 179
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A
Probab=93.75 E-value=0.12 Score=41.86 Aligned_cols=52 Identities=12% Similarity=0.093 Sum_probs=46.1
Q ss_pred cchhhhHHHHHHhhhcC--cCcccccchhhhHHHHHHHHHhhhhhhhhhhheee
Q 002364 622 QVITILWFSLSTLFFAH--KENTVSTLGRLVLIIWLFVVLIINSSYTASLTSIL 673 (930)
Q Consensus 622 ~~~~~~~~~~~~l~~~~--~~~~~s~s~R~~~~~w~~~~lil~~~Yta~L~s~L 673 (930)
++.+++|+++.++...| .-.|.+..+|++.++|.++++.+.+...+.+++.+
T Consensus 28 ~~~~a~yf~~~T~tTvGyGdi~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~l 81 (82)
T 3ldc_A 28 SWTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVAVERLLEFL 81 (82)
T ss_dssp CHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999998876 33899999999999999999999999999888764
No 180
>2fyi_A HTH-type transcriptional regulator CBL; Lys-R family, cofactor-binding DO cysteine biosynthesis; 2.80A {Escherichia coli K12} SCOP: c.94.1.1
Probab=93.48 E-value=1.3 Score=43.47 Aligned_cols=85 Identities=14% Similarity=0.197 Sum_probs=57.8
Q ss_pred CceeEEEecCCccccceeeeccCCcceEeeeHHHHHHHHHhCCCcccEEEEecCCCCCCCCHHHHHHHHHcCcccEEEee
Q 002364 464 GKLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGD 543 (930)
Q Consensus 464 g~~lrv~~~~~~~~~p~~~~~~~~~~~~G~~~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~D~~~~~ 543 (930)
.++||||+.. .. ...+-.+++..+.++.+ .+++++.. ++...++++|.+|++|+++..
T Consensus 13 ~g~lrIg~~~--~~------------~~~~l~~~l~~f~~~~P-~v~l~l~~-------~~~~~~~~~l~~g~~Dl~i~~ 70 (228)
T 2fyi_A 13 SGVLTIATTH--TQ------------ARYSLPEVIKAFRELFP-EVRLELIQ-------GTPQEIATLLQNGEADIGIAS 70 (228)
T ss_dssp CEEEEEEECH--HH------------HHHTHHHHHHHHHHHCT-TEEEEEEE-------CCHHHHHHHHHHTSCSEEEES
T ss_pred cceEEEeecc--ch------------HHHHHHHHHHHHHHHCC-CcEEEEEe-------CCHHHHHHHHHcCCccEEEEe
Confidence 3579998874 11 12456678889988886 46677665 568899999999999999863
Q ss_pred eeeecCceeeeeecccccccceEEEEeccC
Q 002364 544 ITIVTNRTKIVDFSQPYAASGLVVVVPFRK 573 (930)
Q Consensus 544 ~~~t~~r~~~vdft~p~~~~~~~~lv~~~~ 573 (930)
... .....+. ..++....+++++++..
T Consensus 71 ~~~--~~~~~l~-~~~l~~~~~~~v~~~~h 97 (228)
T 2fyi_A 71 ERL--SNDPQLV-AFPWFRWHHSLLVPHDH 97 (228)
T ss_dssp SSS--TTCTTEE-EEEEEEECEEEEEETTC
T ss_pred ccc--CCCCCce-EEEeeecceEEEecCCC
Confidence 211 1112222 35777888888888755
No 181
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Probab=93.18 E-value=0.098 Score=43.95 Aligned_cols=58 Identities=17% Similarity=0.333 Sum_probs=51.0
Q ss_pred cchhhhHHHHHHhhhcCc--CcccccchhhhHHHHHHHHHhhhhhhhhhhheeeeccccc
Q 002364 622 QVITILWFSLSTLFFAHK--ENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLY 679 (930)
Q Consensus 622 ~~~~~~~~~~~~l~~~~~--~~~~s~s~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~ 679 (930)
.+.+++|+++.++...|- -.|.+..+|++.++|.++++.+.+...+.+++.++.++..
T Consensus 32 ~~~~a~yf~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~i~~i~~~~~~~~~~ 91 (97)
T 3ouf_A 32 RPIDALYFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPSIL 91 (97)
T ss_dssp CHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred CHHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 578999999999987763 3899999999999999999999999999999988776543
No 182
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=93.14 E-value=0.24 Score=57.11 Aligned_cols=120 Identities=13% Similarity=0.068 Sum_probs=73.0
Q ss_pred cchhhhHHHHHHhhhcCcC--cccccchhhhHHHHHHHHHhhhhhhhhh-hheeeecccccCCCC-----Ch-HHhhhCC
Q 002364 622 QVITILWFSLSTLFFAHKE--NTVSTLGRLVLIIWLFVVLIINSSYTAS-LTSILTVQQLYSPIN-----GI-ESLRKSD 692 (930)
Q Consensus 622 ~~~~~~~~~~~~l~~~~~~--~~~s~s~R~~~~~w~~~~lil~~~Yta~-L~s~Lt~~~~~~~i~-----s~-~dL~~~~ 692 (930)
.+..++||++.++...|.. .|.+..+|++.++|.++++.+.++..+. ++++++.+.++...+ .. +.+ .
T Consensus 51 ~~~~~~y~~~~t~tTvGygd~~p~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 127 (565)
T 4gx0_A 51 SFMAGIYWTITVMTTLGFGDITFESDAGYLFASIVTVSGVIFLDIILPFGFVSMFLAPWIERRLRYHPTIELPDDT---R 127 (565)
T ss_dssp CHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTSCCCBCCCCTTC---C
T ss_pred chhhhhheeeeeeeeecCCCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccc---C
Confidence 6889999999999987643 7889999999999999999888887777 555554433222111 11 112 2
Q ss_pred CCeEEEeCchHHHHHHHhhccccccceecCCHHHHHHHHhcCCCCC-ceEEEEecch
Q 002364 693 DPIGYQEGSFAEYYLSQELNISKSRLVALRTPEDYAKALKDGPGKG-GVAAVVDERP 748 (930)
Q Consensus 693 ~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g-~~~a~i~~~~ 748 (930)
..+.+...+..-..+.+.+......++..+..++..+.+.+ . +..++..+..
T Consensus 128 ~hviI~G~g~~g~~la~~L~~~~~~vvvid~~~~~~~~~~~----~~~~~~i~Gd~~ 180 (565)
T 4gx0_A 128 GHILIFGIDPITRTLIRKLESRNHLFVVVTDNYDQALHLEE----QEGFKVVYGSPT 180 (565)
T ss_dssp SCEEEESCCHHHHHHHHHTTTTTCCEEEEESCHHHHHHHHH----SCSSEEEESCTT
T ss_pred CeEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH----hcCCeEEEeCCC
Confidence 23444443333333334443333445555555666666665 4 5566666543
No 183
>2zzv_A ABC transporter, solute-binding protein; periplasmic substrate binding protein, calcium, lactate, trap transporter, transport protein; 1.40A {Thermus thermophilus} PDB: 2zzw_A 2zzx_A
Probab=93.06 E-value=0.57 Score=50.31 Aligned_cols=59 Identities=22% Similarity=0.228 Sum_probs=43.6
Q ss_pred CCCCChHHhhhCCCCeEEEeCchHHHHHHHhhccccccceecCCHHHHHHHHhcCCCCCceEEEEecchhH
Q 002364 680 SPINGIESLRKSDDPIGYQEGSFAEYYLSQELNISKSRLVALRTPEDYAKALKDGPGKGGVAAVVDERPYV 750 (930)
Q Consensus 680 ~~i~s~~dL~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~i~~~~~~ 750 (930)
.+|++++||. |+++.+. +......+ +.++.. .+++ ...|...+|++ |.+|+.....+..
T Consensus 164 ~pI~s~~DLk--G~kirv~-~~~~~~~~-~~lGa~---pv~~-~~~e~~~ALq~----G~VDg~~~~~~~~ 222 (361)
T 2zzv_A 164 KPIRRFEDFK--GVKLRVP-GGMIAEVF-AAAGAS---TVLL-PGGEVYPALER----GVIDAADFVGPAV 222 (361)
T ss_dssp SCCCSGGGGT--TCEEECC-SHHHHHHH-HHTTCE---EECC-CGGGHHHHHHT----TSCSEEECSCHHH
T ss_pred CCcCChHHhC--CCEEeec-CHHHHHHH-HHcCCe---eeec-ChHHHHHHHHc----CCcceeecCCcch
Confidence 6899999998 9999887 54445555 455543 3333 56788999999 8999998776665
No 184
>2hxr_A HTH-type transcriptional regulator CYNR; CYNR transcriptional regulator LYSR struc genomics, PSI-2, protein structure initiative; 2.05A {Escherichia coli} PDB: 3hfu_A
Probab=92.85 E-value=3.9 Score=40.19 Aligned_cols=83 Identities=16% Similarity=0.214 Sum_probs=56.5
Q ss_pred ceeEEEecCCccccceeeeccCCcceEeeeHHHHHHHHHhCCCcccEEEEecCCCCCCCCHHHHHHHHHcCcccEEEeee
Q 002364 465 KLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGDI 544 (930)
Q Consensus 465 ~~lrv~~~~~~~~~p~~~~~~~~~~~~G~~~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~D~~~~~~ 544 (930)
++||||+.. .. ...+-..++..+.++.+ .+++++.. ++...++.+|.+|++|+++...
T Consensus 30 g~l~Ig~~~--~~------------~~~~l~~~l~~f~~~~P-~v~l~~~~-------~~~~~~~~~l~~g~~Dl~i~~~ 87 (238)
T 2hxr_A 30 GSLRIAVTP--TF------------TSYFIGPLMADFYARYP-SITLQLQE-------MSQEKIEDMLCRDELDVGIAFA 87 (238)
T ss_dssp -CEEEEECH--HH------------HTTTHHHHHHHHHHHCT-TSCEEEEE-------CCHHHHHHHHHTTSCSEEEEES
T ss_pred CeEEEeech--hh------------HHHHHHHHHHHHHHhCC-CcEEEEEE-------CCHHHHHHHHHcCCCcEEEEcC
Confidence 569999873 11 12456678888888886 36676665 5578899999999999998632
Q ss_pred eeecCceeeeeecccccccceEEEEeccC
Q 002364 545 TIVTNRTKIVDFSQPYAASGLVVVVPFRK 573 (930)
Q Consensus 545 ~~t~~r~~~vdft~p~~~~~~~~lv~~~~ 573 (930)
... ...+. +.++....+++++++..
T Consensus 88 ~~~---~~~l~-~~~l~~~~~~~v~~~~h 112 (238)
T 2hxr_A 88 PVH---SPELE-AIPLLTESLALVVAQHH 112 (238)
T ss_dssp SCC---CTTEE-EEEEEEEEEEEEEETTS
T ss_pred CCC---cccce-eeeeccCcEEEEEcCCC
Confidence 211 12232 35778888888888655
No 185
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*
Probab=92.81 E-value=0.13 Score=54.00 Aligned_cols=62 Identities=11% Similarity=0.094 Sum_probs=53.0
Q ss_pred CCccccchhhhHHHHHHhhhcC--cCcccccchhhhHHHHHHHHHhhhhhhhhhhheeeecccc
Q 002364 617 GPPKRQVITILWFSLSTLFFAH--KENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQL 678 (930)
Q Consensus 617 ~~~~~~~~~~~~~~~~~l~~~~--~~~~~s~s~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~ 678 (930)
+....++..++||++.++...| .-.|.+..+|++.+++.++++++.+.-++.+++.++.+..
T Consensus 91 ~~~~~s~~~a~yfs~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~ig~i~~~~~~~~~ 154 (333)
T 1p7b_A 91 NQSPPGFVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALSTGLVFARFARPRA 154 (333)
T ss_dssp CSSSSSTHHHHHHHTTTTTTCCCSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCC
T ss_pred CCCCCcHHHhHhhhheeeeecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334578899999999998776 3389999999999999999999999999999999987653
No 186
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=92.54 E-value=0.18 Score=43.73 Aligned_cols=55 Identities=18% Similarity=0.343 Sum_probs=48.1
Q ss_pred cchhhhHHHHHHhhhcCc--CcccccchhhhHHHHHHHHHhhhhhhhhhhheeeecc
Q 002364 622 QVITILWFSLSTLFFAHK--ENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQ 676 (930)
Q Consensus 622 ~~~~~~~~~~~~l~~~~~--~~~~s~s~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~ 676 (930)
+..+++|+++.++...|- -.|.+..+|++.++|.++++.+.+...+.+++.++..
T Consensus 49 ~~~~a~y~~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~~~~l~~~~~~~ 105 (114)
T 2q67_A 49 RPIDALYFSVVTLTTVGAGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLP 105 (114)
T ss_dssp CHHHHHHHHHHHHTSCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred CHHHHHHHHHHHhcceeCCCCccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999997763 3899999999999999999999999999999887553
No 187
>1al3_A Cys regulon transcriptional activator CYSB; LYSR family, cysteine biosynthesis, transcription regulation; 1.80A {Klebsiella aerogenes} SCOP: c.94.1.1
Probab=92.37 E-value=1.6 Score=45.81 Aligned_cols=206 Identities=13% Similarity=0.064 Sum_probs=120.0
Q ss_pred ceeEEEecCCccccceeeeccCCcceEeeeHHHHHHHHHhCCCcccEEEEecCCCCCCCCHHHHHHHHHcCcccEEEeee
Q 002364 465 KLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGDI 544 (930)
Q Consensus 465 ~~lrv~~~~~~~~~p~~~~~~~~~~~~G~~~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~D~~~~~~ 544 (930)
++||||+.. .+ ...+-..++..+.++.+ .+++.+.. ++...++..|.+|++|+++...
T Consensus 93 g~l~I~~~~--~~------------~~~~l~~~l~~f~~~~P-~v~i~l~~-------~~~~~~~~~l~~g~~Dlai~~~ 150 (324)
T 1al3_A 93 GSLYVATTH--TQ------------ARYALPGVIKGFIERYP-RVSLHMHQ-------GSPTQIAEAVSKGNADFAIATE 150 (324)
T ss_dssp EEEEEEECH--HH------------HHHTSHHHHHHHHHHCT-EEEEEEEE-------CCHHHHHHHHHTTCCSEEEESS
T ss_pred CeEEEEech--hh------------hhhHHHHHHHHHHHHCC-CCEEEEEE-------CCHHHHHHHHHCCCceEEEEec
Confidence 579998874 11 12455678888888875 35566665 5578999999999999998642
Q ss_pred eeecCceeeeeecccccccceEEEEeccCCCCCcceeeccCchhHHHHHHHHHHHHHHHhhhhhcccCCCCCCCccccch
Q 002364 545 TIVTNRTKIVDFSQPYAASGLVVVVPFRKLNTGAWAFLRPFSPLMWTVTACFFVVVGIVVWILEHRINDEFRGPPKRQVI 624 (930)
Q Consensus 545 ~~t~~r~~~vdft~p~~~~~~~~lv~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (930)
... ....+. +.|+....+++++++..+..
T Consensus 151 ~~~--~~~~l~-~~~L~~~~~~~v~~~~~pl~------------------------------------------------ 179 (324)
T 1al3_A 151 ALH--LYDDLV-MLPCYHWNRSIVVTPEHPLA------------------------------------------------ 179 (324)
T ss_dssp CCC--TTSCEE-EEEEEEECEEEEECTTSTTT------------------------------------------------
T ss_pred CCC--CCCCee-EEEecCCceEEEEcCCCccc------------------------------------------------
Confidence 211 112222 35677778888887655210
Q ss_pred hhhHHHHHHhhhcCcCcccccchhhhHHHHHHHHHhhhhhhhhhhheeeecccccCCCCChHHhhhCCCCeEE-EeCchH
Q 002364 625 TILWFSLSTLFFAHKENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLYSPINGIESLRKSDDPIGY-QEGSFA 703 (930)
Q Consensus 625 ~~~~~~~~~l~~~~~~~~~s~s~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~~v~~-~~~s~~ 703 (930)
....-+++||. +.++.. ..++..
T Consensus 180 ------------------------------------------------------~~~~~~~~dL~--~~~~i~~~~~~~~ 203 (324)
T 1al3_A 180 ------------------------------------------------------TKGSVSIEELA--QYPLVTYTFGFTG 203 (324)
T ss_dssp ------------------------------------------------------TTSCCCHHHHH--TSEEEEECTTSTT
T ss_pred ------------------------------------------------------cCCCCCHHHHh--CCCeEEecCCCcH
Confidence 02334688987 555433 333322
Q ss_pred ----HHHHHHhhccccccceecCCHHHHHHHHhcCCCCCceEEEEecchhHHHHHhcCccEEEeC--ccccccceeeeeC
Q 002364 704 ----EYYLSQELNISKSRLVALRTPEDYAKALKDGPGKGGVAAVVDERPYVELFLSSQCSFRIVG--QEFTKSGWGFAFP 777 (930)
Q Consensus 704 ----~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~i~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~ 777 (930)
..++ ...+.........++.+...+++.. |...+++-...... .. ..++..+. .......++++.+
T Consensus 204 ~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~lv~~----G~Giailp~~~~~~-~~--~~~L~~~~~~~~~~~~~~~l~~~ 275 (324)
T 1al3_A 204 RSELDTAF-NRAGLTPRIVFTATDADVIKTYVRL----GLGVGVIASMAVDP-VS--DPDLVKLDANGIFSHSTTKIGFR 275 (324)
T ss_dssp HHHHHHHH-HHHTCCCEEEEEESSHHHHHHHHHH----TSCEEEEEGGGCCT-TT--CTTSEEEECBTTBCCEEEEEEEE
T ss_pred HHHHHHHH-HHcCCCCceEEEeCCHHHHHHHHHh----CCCeEEechhhhhh-hc--cCCeEEEECCCCCcceEEEEEEe
Confidence 2333 2234433344567788888999988 55556665432211 11 22344442 2333445778888
Q ss_pred CCCcchHHHHHHHHhhhhccchHHHHHHhcc
Q 002364 778 RDSPLAVDLSSAILELAENGDLQRIHDKWLM 808 (930)
Q Consensus 778 k~spl~~~i~~~i~~l~e~G~~~~~~~~w~~ 808 (930)
++.+....+...+..+.+.- -+.+.++++.
T Consensus 276 ~~~~~~~~~~~fi~~l~~~~-~~~~~~~~~~ 305 (324)
T 1al3_A 276 RSTFLRSYMYDFIQRFAPHL-TRDVVDTAVA 305 (324)
T ss_dssp TTCCCCHHHHHHHHHHCTTC-CHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHh-ccchhhhhhh
Confidence 88777777777666665543 3445555544
No 188
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=92.32 E-value=0.15 Score=54.30 Aligned_cols=124 Identities=13% Similarity=0.046 Sum_probs=73.3
Q ss_pred cchhhhHHHHHHhhhcCcC--cccccchhhhHHHHHHHHHhhhhhhhhhhheeeecccccCCCCChHHhhhCCCCeEEEe
Q 002364 622 QVITILWFSLSTLFFAHKE--NTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLYSPINGIESLRKSDDPIGYQE 699 (930)
Q Consensus 622 ~~~~~~~~~~~~l~~~~~~--~~~s~s~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~~v~~~~ 699 (930)
++..++||++.++...|.. .|.+..+|++.++|.++++++.+...+.+++.++.......... ....+ ..++.+..
T Consensus 45 ~~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~viI~G 122 (336)
T 1lnq_A 45 SWTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFLINREQMKLMGL-IDVAK-SRHVVICG 122 (336)
T ss_dssp CSSTTHHHHHHHHTTCCCSSCCCCCSSHHHHHTHHHHTTSTTTTTHHHHHTTTC-------------------CEEEEES
T ss_pred CHHHHHHHHHHHhhcccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhcc-cCCEEEEC
Confidence 5788999999999977633 78999999999999999999999999999999988665432221 11111 22344444
Q ss_pred CchHHHHHHHhhccccccceecCCHHHHHHHHhcCCCCCceEEEEecchhHHHH
Q 002364 700 GSFAEYYLSQELNISKSRLVALRTPEDYAKALKDGPGKGGVAAVVDERPYVELF 753 (930)
Q Consensus 700 ~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~i~~~~~~~~~ 753 (930)
....-..+.+.+..... ++-.+..++..+ +.+ .+..++..+....+.+
T Consensus 123 ~G~~g~~l~~~L~~~g~-v~vid~~~~~~~-~~~----~~~~~i~gd~~~~~~L 170 (336)
T 1lnq_A 123 WSESTLECLRELRGSEV-FVLAEDENVRKK-VLR----SGANFVHGDPTRVSDL 170 (336)
T ss_dssp CCHHHHHHHTTGGGSCE-EEEESCGGGHHH-HHH----TTCEEEESCTTSHHHH
T ss_pred CcHHHHHHHHHHHhCCc-EEEEeCChhhhh-HHh----CCcEEEEeCCCCHHHH
Confidence 33333344344432233 444555555556 554 4556666665544443
No 189
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*
Probab=92.30 E-value=0.2 Score=51.84 Aligned_cols=61 Identities=10% Similarity=0.078 Sum_probs=52.1
Q ss_pred CCccccchhhhHHHHHHhhhcC--cCcccccchhhhHHHHHHHHHhhhhhhhhhhheeeeccc
Q 002364 617 GPPKRQVITILWFSLSTLFFAH--KENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQ 677 (930)
Q Consensus 617 ~~~~~~~~~~~~~~~~~l~~~~--~~~~~s~s~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~ 677 (930)
+.....+..++||++.++..-| .-.|.+..+|++.+++.++++++.+..++.+++.++.+.
T Consensus 77 ~~~~~s~~~a~yfs~vT~tTvGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~v~~~~~~~~ 139 (301)
T 1xl4_A 77 NARPGSFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYARFTRPT 139 (301)
T ss_dssp TSCTTCHHHHHHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred CCCcCCHHHHHHHhhhheeccCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 3345578999999999998775 338999999999999999999999999999999987653
No 190
>2esn_A Probable transcriptional regulator; PA0477, APC5828,transcription, PSI, protein struc initiative, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.37 c.94.1.1
Probab=92.05 E-value=1.9 Score=44.76 Aligned_cols=84 Identities=13% Similarity=0.160 Sum_probs=54.8
Q ss_pred CceeEEEecCCccccceeeeccCCcceEeeeHHHHHHHHHhCCCcccEEEEecCCCCCCCCHHHHHHHHHcCcccEEEee
Q 002364 464 GKLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGD 543 (930)
Q Consensus 464 g~~lrv~~~~~~~~~p~~~~~~~~~~~~G~~~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~D~~~~~ 543 (930)
.++||||+.. .. ...+-.+++..+.++.+ .+++.+.. ++..+++.+|.+|++|+++..
T Consensus 100 ~~~l~Ig~~~--~~------------~~~~l~~~l~~f~~~~P-~i~i~l~~-------~~~~~~~~~l~~g~~Dl~i~~ 157 (310)
T 2esn_A 100 QRTFVFAATD--YT------------AFALLPPLMNRLQHSAP-GVRLRLVN-------AERKLSVEALASGRIDFALGY 157 (310)
T ss_dssp CCEEEEECCH--HH------------HHHHHHHHHHHHHHHST-TCEEEEEC-------CSSSCCHHHHHHTSSSEEEEC
T ss_pred CceEEEEeCh--HH------------HHHHHHHHHHHHHHHCC-CeEEEEEe-------CCcccHHHHHHcCCCCEEEec
Confidence 3579998873 11 12455678888888875 35566654 345567889999999999864
Q ss_pred ---eeeecCceeeeeecccccccceEEEEeccC
Q 002364 544 ---ITIVTNRTKIVDFSQPYAASGLVVVVPFRK 573 (930)
Q Consensus 544 ---~~~t~~r~~~vdft~p~~~~~~~~lv~~~~ 573 (930)
..... ..+. ..|+....+++++++..
T Consensus 158 ~~~~~~~~---~~l~-~~~l~~~~~~~v~~~~~ 186 (310)
T 2esn_A 158 DEEHERLP---EGIQ-AHDWFADRYVVVARRDH 186 (310)
T ss_dssp CSTTCCCC---TTEE-EEEEEEECEEEEEESSC
T ss_pred CcccccCC---cCcc-eeeeeccceEEEEeCCC
Confidence 22111 1222 35777888888888655
No 191
>1atg_A MODA, periplasmic molybdate-binding protein; tungstate, ABC transporter; 1.20A {Azotobacter vinelandii} SCOP: c.94.1.1
Probab=91.99 E-value=0.67 Score=45.59 Aligned_cols=71 Identities=13% Similarity=0.008 Sum_probs=43.9
Q ss_pred eHHHHHHHHHhCCCcccEEEEecCCCCCCCCHHHHHHHHHcCc-ccEEEeeeeeecC---ceeeee--ecccccccceEE
Q 002364 494 CIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGV-FDAVVGDITIVTN---RTKIVD--FSQPYAASGLVV 567 (930)
Q Consensus 494 ~~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~-~D~~~~~~~~t~~---r~~~vd--ft~p~~~~~~~~ 567 (930)
--++++.+.++-|.++++ .. ++-..++.+|.+|+ +|+++..-....+ ....+. -..|+....+++
T Consensus 14 l~~~~~~F~~~p~i~v~~--~~-------~~s~~l~~~l~~g~~~Dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl 84 (231)
T 1atg_A 14 LEQLAGQFAKQTGHAVVI--SS-------GSSGPVYAQIVNGAPYNVFFSADEKSPEKLDNQGFALPGSRFTYAIGKLVL 84 (231)
T ss_dssp HHHHHHHHHHHHCCCEEE--EE-------ECHHHHHHHHHTTCCCSEEECSSSHHHHHHHHTTCBCTTCCEEEEECCEEE
T ss_pred HHHHHHHHHhccCCeEEE--EE-------CCcHHHHHHHHcCCCCCEEEeCChhHHHHHHhcCCCcCCceeEeeeeeEEE
Confidence 346777777776755444 33 34678999999998 9998753211111 111111 246788888888
Q ss_pred EEeccC
Q 002364 568 VVPFRK 573 (930)
Q Consensus 568 lv~~~~ 573 (930)
++++..
T Consensus 85 v~~~~~ 90 (231)
T 1atg_A 85 WSAKPG 90 (231)
T ss_dssp EESSTT
T ss_pred EEcCCC
Confidence 887655
No 192
>4esw_A Pyrimidine biosynthesis enzyme THI13; thiamin pyrimidine biosynthesis, transferase; HET: CIT; 1.60A {Candida albicans} PDB: 4esx_A*
Probab=91.76 E-value=0.57 Score=49.90 Aligned_cols=66 Identities=18% Similarity=0.315 Sum_probs=41.8
Q ss_pred CCCCChHHhhhCCCCeEEEeCchHHHHH---HHhhccccccceecCCHHHHHHHHhcCCCCCceEEEEecchhHHH
Q 002364 680 SPINGIESLRKSDDPIGYQEGSFAEYYL---SQELNISKSRLVALRTPEDYAKALKDGPGKGGVAAVVDERPYVEL 752 (930)
Q Consensus 680 ~~i~s~~dL~~~~~~v~~~~~s~~~~~l---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~i~~~~~~~~ 752 (930)
+.+++++||. |+++|+.. +....++ .+..++....+.......+...++.+ |.+|+.+.-.++...
T Consensus 101 ~~~~~~~dLk--GK~ig~~~-~~~~~~l~~~L~~~Gl~~~dv~~v~~~~~~~~al~~----G~vDa~~~~~p~~~~ 169 (342)
T 4esw_A 101 GITSDFQSLK--GKRIGYVG-EFGKIQVDELTKHYGMTPDDYVAVRCGMNVAKYILE----GTIDCGIGIECIQQV 169 (342)
T ss_dssp SCCSSGGGGT--TCEEEESS-SHHHHHHHHHHGGGTCCGGGSEEEECGGGHHHHHHH----TSSSEEEEETTTHHH
T ss_pred cccCCHHHhC--CCEEEecC-CchHHHHHHHHHHcCCChhheEEecCCHHHHHHHHc----CCCCEEEEeccchHH
Confidence 5677899998 99999854 3333222 23445554544444444456778888 899998876665443
No 193
>2pfy_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.95A {Bordetella pertussis tohama I}
Probab=91.75 E-value=1.4 Score=45.87 Aligned_cols=87 Identities=7% Similarity=-0.004 Sum_probs=51.8
Q ss_pred CCCCChHHhhhCCCCeEEEeCchHHHHHHHhhccccccceecCCHHHHHHHHhcCCCCCceEEEEecchhHHHH-HhcCc
Q 002364 680 SPINGIESLRKSDDPIGYQEGSFAEYYLSQELNISKSRLVALRTPEDYAKALKDGPGKGGVAAVVDERPYVELF-LSSQC 758 (930)
Q Consensus 680 ~~i~s~~dL~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~i~~~~~~~~~-~~~~~ 758 (930)
.+|++++||. |+++.+. ++.....+ +.++.. .++. ...|...+|++ |.+|+.........-. ..+-.
T Consensus 129 ~pI~s~~Dlk--G~KiR~~-~~~~~~~~-~~lGa~---pv~~-~~~E~y~ALq~----G~vDg~~~~~~~~~~~~~~ev~ 196 (301)
T 2pfy_A 129 KPVAALADLK--GTRFRAY-SASTSHMA-ALMGAV---PTTV-QTPEVPQAFST----GVIDAMLTSPATGVDSQAWDYV 196 (301)
T ss_dssp SCCSSGGGGT--TCEEEEC-SHHHHHHH-HHTTSE---EEEC-CGGGHHHHHHT----TSCSBEEECHHHHHHTTGGGTC
T ss_pred CCCCCHHHhC--CCEEeec-ChhHHHHH-HHcCCc---ceec-cHHHHHHHHhc----ceeeeEecCccccccccHHHHh
Confidence 6899999998 9999886 55444555 455533 3333 56789999999 8999985443322111 11223
Q ss_pred cEEEeCccccccceeeeeCCC
Q 002364 759 SFRIVGQEFTKSGWGFAFPRD 779 (930)
Q Consensus 759 ~l~~~~~~~~~~~~~~~~~k~ 779 (930)
++...... ......+++.+.
T Consensus 197 k~~~~~~~-~~~~~~~~~n~~ 216 (301)
T 2pfy_A 197 KYYYDAQA-FIPQSFVIANKR 216 (301)
T ss_dssp CEEEECCC-CCCEEEEEEEHH
T ss_pred hhhccccc-ccceeeEEEcHH
Confidence 54443332 223345666654
No 194
>2xed_A Putative maleate isomerase; nicotinic acid catabolism, cofactor-independent CIS-trans isomerase; 1.95A {Nocardia farcinica} PDB: 2xec_A
Probab=91.73 E-value=1.8 Score=44.22 Aligned_cols=127 Identities=17% Similarity=0.082 Sum_probs=80.4
Q ss_pred HHHHHHhcCcEEEEcCCChhHHH-------H-HHHhhccC-----CCcEEecccCCCCCCCCCCCceEeecCCchHHHHH
Q 002364 88 EALRFMETDIVAIIGPQCSTVAH-------I-VSYVSNEL-----QVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTA 154 (930)
Q Consensus 88 ~a~~li~~~v~aiiGp~~s~~~~-------~-v~~~~~~~-----~iP~is~~a~~~~l~~~~~p~~~r~~p~~~~~~~a 154 (930)
.+..|.+.++.+|+-+-++.... . ...+.+.. ++|+++. +.+
T Consensus 82 aa~~L~~~g~d~IviaCnta~~~~G~~~~~~~~~~l~~~~~~~~~~iPv~~~-------------------------~~A 136 (273)
T 2xed_A 82 CVLEIADAAPEVILYACLVAVMVGGPGEHHRVESAVAEQLATGGSQALVRSS-------------------------AGA 136 (273)
T ss_dssp HHHHHHTTCCSEEEECCHHHHHTTCTTHHHHHHHHHHHHHHHTTCCCEEEEH-------------------------HHH
T ss_pred HHHHHhhcCCCEEEECCChHHHhcccchhHHHHHHHHHHhhccCCCCCEecH-------------------------HHH
Confidence 44445555888888655554221 1 23333344 7888862 355
Q ss_pred HHHHHHhcCccEEEEEEEcCccccchHHHHHHHHhhcceEEEEEEecCCCC-----CCChhHHHHHHHHHHhCCceEEEE
Q 002364 155 VAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPES-----GVNTGYVMDLLVKVALMESRVIVL 229 (930)
Q Consensus 155 i~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~-----~~~~~~~~~~l~~l~~~~~~viil 229 (930)
+++.++..|-++|+++. .|.....+.+.+.+++.|+++.......... ..+...+...++++...++|+||+
T Consensus 137 ~~~al~~~g~~rvgvlt---p~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~g~~~~~~l~~~~~~l~~~gadaIvL 213 (273)
T 2xed_A 137 LVEGLRALDAQRVALVT---PYMRPLAEKVVAYLEAEGFTISDWRALEVADNTEVGCIPGEQVMAAARSLDLSEVDALVI 213 (273)
T ss_dssp HHHHHHHTTCCEEEEEE---CSCHHHHHHHHHHHHHTTCEEEEEEECCCCBHHHHHTCCHHHHHHHHHHSCCTTCSEEEE
T ss_pred HHHHHHHcCCCeEEEEc---CChhhhHHHHHHHHHHCCCEEeccccCCCccchhhcccCHHHHHHHHHHHhhCCCCEEEE
Confidence 66666777889999995 4666566788899999999876554433210 123455777777776678999999
Q ss_pred E-cChhhHHHHHHH
Q 002364 230 H-VSPSLGFQVFSV 242 (930)
Q Consensus 230 ~-~~~~~~~~~~~~ 242 (930)
. |..-....+..+
T Consensus 214 g~CT~l~~~~~~~~ 227 (273)
T 2xed_A 214 SCAVQMPSLPLVET 227 (273)
T ss_dssp ESSSSSCCTTHHHH
T ss_pred cCCCCcchHHhHHH
Confidence 9 887554333433
No 195
>2pfz_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.80A {Bordetella pertussis tohama I}
Probab=91.62 E-value=1.5 Score=45.64 Aligned_cols=56 Identities=9% Similarity=0.128 Sum_probs=40.4
Q ss_pred CCCCChHHhhhCCCCeEEEeCchHHHHHHHhhccccccceecCCHHHHHHHHhcCCCCCceEEEEecc
Q 002364 680 SPINGIESLRKSDDPIGYQEGSFAEYYLSQELNISKSRLVALRTPEDYAKALKDGPGKGGVAAVVDER 747 (930)
Q Consensus 680 ~~i~s~~dL~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~i~~~ 747 (930)
.+|++++||. |+++.+. ++.....+ +.++.. .++. ...|...+|++ |.+|+.....
T Consensus 128 ~pI~s~~Dlk--G~KiR~~-~~~~~~~~-~~lGa~---pv~~-~~~E~y~ALq~----G~vDg~~~~~ 183 (301)
T 2pfz_A 128 RDIKQVSDMK--GLKWRAY-SPVTAKIA-ELVGAQ---PVTV-QQAELAQAMAT----GVIDSYMSSG 183 (301)
T ss_dssp SCCSSGGGGT--TCEEEES-SHHHHHHH-HHHTCE---EEEC-CGGGHHHHHHT----TSCSEEEECH
T ss_pred CCCCChHHhc--CCEEecC-ChhHHHHH-HHcCCc---ceec-CHHHHHHHHhc----CeeeEEecCc
Confidence 6899999998 9999886 55444555 455543 3333 56789999999 8999985543
No 196
>3fxq_A LYSR type regulator of TSAMBCD; transcriptional regulator, LTTR, TSAR, WHTH, DNA- transcription, transcription regulation; 1.85A {Comamonas testosteroni} PDB: 3fxr_A* 3fxu_A* 3fzj_A 3n6t_A 3n6u_A*
Probab=91.49 E-value=1.6 Score=45.23 Aligned_cols=85 Identities=12% Similarity=0.086 Sum_probs=56.2
Q ss_pred ceeEEEecCCccccceeeeccCCcceEeeeHHHHHHHHHhCCCcccEEEEecCCCCCCCCHHHHHHHHHcCcccEEEeee
Q 002364 465 KLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGDI 544 (930)
Q Consensus 465 ~~lrv~~~~~~~~~p~~~~~~~~~~~~G~~~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~D~~~~~~ 544 (930)
++||||+.. .+ ...+-..++..+.++.+ .+++.+.. +..+.++..|.+|++|+++...
T Consensus 92 g~l~I~~~~--~~------------~~~~l~~~l~~f~~~~P-~i~i~l~~-------~~~~~~~~~l~~g~~Dlai~~~ 149 (305)
T 3fxq_A 92 GHITFAASP--AI------------ALAALPLALASFAREFP-DVTVNVRD-------GMYPAVSPQLRDGTLDFALTAA 149 (305)
T ss_dssp TEEEEEECH--HH------------HHTHHHHHHHHHHHHCT-TCEEEEEE-------CCTTTTHHHHHHTSSSEEEEEC
T ss_pred ceEEEEech--HH------------HHHHHHHHHHHHHHHCC-CCEEEEEE-------CCHHHHHHHHHcCCCCEEEecC
Confidence 568998884 11 12456678888888875 35566665 4467789999999999998643
Q ss_pred eeecCceeeeeecccccccceEEEEeccC
Q 002364 545 TIVTNRTKIVDFSQPYAASGLVVVVPFRK 573 (930)
Q Consensus 545 ~~t~~r~~~vdft~p~~~~~~~~lv~~~~ 573 (930)
.... ....+ -..|+....+++++++..
T Consensus 150 ~~~~-~~~~l-~~~~L~~~~~~~v~~~~h 176 (305)
T 3fxq_A 150 HKHD-IDTDL-EAQPLYVSDVVIVGQRQH 176 (305)
T ss_dssp CGGG-SCTTE-EEEEEEECCEEEEEETTC
T ss_pred CCCC-CccCe-eEEEeecCcEEEEEcCCC
Confidence 2211 01122 245777888999988765
No 197
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=91.41 E-value=0.37 Score=44.15 Aligned_cols=54 Identities=17% Similarity=0.343 Sum_probs=47.6
Q ss_pred cchhhhHHHHHHhhhcCc--CcccccchhhhHHHHHHHHHhhhhhhhhhhheeeec
Q 002364 622 QVITILWFSLSTLFFAHK--ENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTV 675 (930)
Q Consensus 622 ~~~~~~~~~~~~l~~~~~--~~~~s~s~R~~~~~w~~~~lil~~~Yta~L~s~Lt~ 675 (930)
.+.+++||++.++...|- -.|.+..+|++.++|.++++.+.+...+++++.+..
T Consensus 52 ~~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~ 107 (148)
T 3vou_A 52 RPLDALYFSVVTLTTVGDGNFSPQTDFGKVFTILYIFIGIGLVFGFIHKLAVNVQL 107 (148)
T ss_dssp CHHHHHHHHHHHHTTCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
T ss_pred CHHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999998763 388999999999999999999999999999887644
No 198
>1ixc_A CBNR, LYSR-type regulatory protein; long alpha helix connecting DNA binding and regulatory domai binding protein; 2.20A {Cupriavidus necator} SCOP: a.4.5.37 c.94.1.1 PDB: 1iz1_A
Probab=91.27 E-value=3.7 Score=42.00 Aligned_cols=84 Identities=10% Similarity=0.007 Sum_probs=57.4
Q ss_pred CceeEEEecCCccccceeeeccCCcceEeeeHHHHHHHHHhCCCcccEEEEecCCCCCCCCHHHHHHHHHcCcccEEEee
Q 002364 464 GKLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGD 543 (930)
Q Consensus 464 g~~lrv~~~~~~~~~p~~~~~~~~~~~~G~~~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~D~~~~~ 543 (930)
.++||||+.. .. ...+-.+++..+.++.+ .+++.+.. ++...++.+|.+|++|+++..
T Consensus 90 ~g~l~Ig~~~--~~------------~~~~l~~~l~~f~~~~P-~i~l~~~~-------~~~~~~~~~l~~g~~Dl~i~~ 147 (294)
T 1ixc_A 90 VGELSVAYFG--TP------------IYRSLPLLLRAFLTSTP-TATVSLTH-------MTKDEQVEGLLAGTIHVGFSR 147 (294)
T ss_dssp CEEEEEEECS--GG------------GGTHHHHHHHHHHHHCT-TEEEEEEE-------CCHHHHHHHHHHTSCSEEEES
T ss_pred CceEEEEEcc--ch------------hHHHHHHHHHHHHHHCC-CcEEEEEe-------CCHHHHHHHHHCCCccEEEEe
Confidence 4579999884 11 12455678888888875 35666665 557789999999999999864
Q ss_pred eeeecCceeeeeecccccccceEEEEeccC
Q 002364 544 ITIVTNRTKIVDFSQPYAASGLVVVVPFRK 573 (930)
Q Consensus 544 ~~~t~~r~~~vdft~p~~~~~~~~lv~~~~ 573 (930)
.... ...+. ..|+....+++++++..
T Consensus 148 ~~~~---~~~l~-~~~l~~~~~~~v~~~~~ 173 (294)
T 1ixc_A 148 FFPR---HPGIE-IVNIAQEDLYLAVHRSQ 173 (294)
T ss_dssp CCCC---CTTEE-EEEEEEEEEEEEEEGGG
T ss_pred cCCC---CCCce-EEEEeeccEEEEEeCCC
Confidence 3221 12222 35777888888888665
No 199
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=90.72 E-value=0.33 Score=48.10 Aligned_cols=73 Identities=11% Similarity=0.225 Sum_probs=56.7
Q ss_pred HHHHHhhhhhcccCCCCCCCccccchhhhHHHHHHhhhcC--cCcccccchhhhHHHHHHHHHhhhhhhhhhhheeeec
Q 002364 599 VVGIVVWILEHRINDEFRGPPKRQVITILWFSLSTLFFAH--KENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTV 675 (930)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~s~s~R~~~~~w~~~~lil~~~Yta~L~s~Lt~ 675 (930)
+.+.+++.+|+.. .++...+...++|+++.++...| .-.|.+..+|++.++++++++.+.+...+.+++.++.
T Consensus 146 ~~~~~~~~~e~~~----~~~~~~~~~~s~y~~~~t~tTvGyGdi~P~t~~~~~~~~~~~~~G~~~~~~~i~~i~~~~~~ 220 (223)
T 1orq_C 146 YGAFAIYIVEYPD----PNSSIKSVFDALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGISALTLLIGTVSNMFQK 220 (223)
T ss_dssp HHHHHHHHTTSSS----TTCSCCSHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC----cCCCcCcchhHHHhHHhHHhccCCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345556665422 12334578999999999998776 3489999999999999999999999999999988754
No 200
>2h9b_A HTH-type transcriptional regulator BENM; LTTR, transcriptional activator, LYSR-type transcripti regulator; 1.80A {Acinetobacter SP} PDB: 2h99_A 3k1m_A 3k1n_A 3k1p_A 2f7a_A* 2f6p_A 2f78_A 2f6g_A* 2f8d_A 2f97_A*
Probab=90.21 E-value=8.2 Score=39.88 Aligned_cols=82 Identities=16% Similarity=0.229 Sum_probs=55.9
Q ss_pred eeEEEecCCccccceeeeccCCcceEeeeHHHHHHHHHhCCCcccEEEEecCCCCCCCCHHHHHHHHHcCcccEEEeeee
Q 002364 466 LLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGDIT 545 (930)
Q Consensus 466 ~lrv~~~~~~~~~p~~~~~~~~~~~~G~~~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~ 545 (930)
+||||+.. .+ ...+-.+++..+.++.+ .+++.+.. ++...++.+|.+|++|+++....
T Consensus 91 ~l~Ig~~~--~~------------~~~~l~~~l~~f~~~~P-~v~i~l~~-------~~~~~~~~~l~~g~~Dlai~~~~ 148 (312)
T 2h9b_A 91 TIRIGFVG--SL------------LFGLLPRIIHLYRQAHP-NLRIELYE-------MGTKAQTEALKEGRIDAGFGRLK 148 (312)
T ss_dssp EEEEEECG--GG------------GGTTHHHHHHHHHHTCT-TCEEEEEE-------CCHHHHHHHHHTTSCSEEEESSC
T ss_pred eEEEEech--hh------------hHhhHHHHHHHHHHHCC-CcEEEEEe-------CCHHHHHHHHHcCCCCEEEEeCC
Confidence 69999884 11 12455678888888875 35566665 56889999999999999986432
Q ss_pred eecCceeeeeecccccccceEEEEeccC
Q 002364 546 IVTNRTKIVDFSQPYAASGLVVVVPFRK 573 (930)
Q Consensus 546 ~t~~r~~~vdft~p~~~~~~~~lv~~~~ 573 (930)
... ..+. +.|+....+++++++..
T Consensus 149 ~~~---~~l~-~~~L~~~~~~~v~~~~h 172 (312)
T 2h9b_A 149 ISD---PAIK-HSLLRNERLMVAVHASH 172 (312)
T ss_dssp CCC---TTEE-EEEEEEEEEEEEEETTS
T ss_pred CCC---CCce-EEEeecceEEEEEcCCC
Confidence 221 1222 35777788888888754
No 201
>2h98_A HTH-type transcriptional regulator CATM; BENM, LTTR; 1.80A {Acinetobacter SP} PDB: 2h9q_A* 2f7b_A 2f7c_A* 3glb_A* 3m1e_A
Probab=90.06 E-value=11 Score=39.14 Aligned_cols=82 Identities=13% Similarity=0.212 Sum_probs=55.7
Q ss_pred eeEEEecCCccccceeeeccCCcceEeeeHHHHHHHHHhCCCcccEEEEecCCCCCCCCHHHHHHHHHcCcccEEEeeee
Q 002364 466 LLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGDIT 545 (930)
Q Consensus 466 ~lrv~~~~~~~~~p~~~~~~~~~~~~G~~~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~ 545 (930)
+||||+.. .+ ...+-..++..+.++.+ .+++.+.. ++...++.+|.+|++|+++....
T Consensus 91 ~l~Ig~~~--~~------------~~~~l~~~l~~f~~~~P-~v~l~l~~-------~~~~~~~~~l~~g~~Dlai~~~~ 148 (313)
T 2h98_A 91 TLRIGYVS--SL------------LYGLLPEIIYLFRQQNP-EIHIELIE-------CGTKDQINALKQGKIDLGFGRLK 148 (313)
T ss_dssp EEEEEECG--GG------------GGTTHHHHHHHHHHHCT-TSEEEEEE-------CCHHHHHHHHHHTSCSEEEESSC
T ss_pred EEEEEech--Hh------------HHhHHHHHHHHHHHHCC-CeEEEEEe-------CChHHHHHHHHcCCCCEEEEeCC
Confidence 79999884 11 12456678888888875 35566665 56889999999999999986432
Q ss_pred eecCceeeeeecccccccceEEEEeccC
Q 002364 546 IVTNRTKIVDFSQPYAASGLVVVVPFRK 573 (930)
Q Consensus 546 ~t~~r~~~vdft~p~~~~~~~~lv~~~~ 573 (930)
... ..+ -..|+....+++++++..
T Consensus 149 ~~~---~~l-~~~~L~~~~~~~v~~~~h 172 (313)
T 2h98_A 149 ITD---PAI-RRIMLHKEQLKLAIHKHH 172 (313)
T ss_dssp CCC---TTE-EEEEEEEEEEEEEEETTS
T ss_pred CCC---CCe-eEEEeeeCcEEEEEcCCC
Confidence 211 122 235777788888888654
No 202
>2hzl_A Trap-T family sorbitol/mannitol transporter, periplasmic binding protein, SMOM; trap transporter, periplasmic subunit, ligand binding; 1.40A {Rhodobacter sphaeroides 2} PDB: 2hzk_A
Probab=89.55 E-value=1.3 Score=47.64 Aligned_cols=87 Identities=17% Similarity=0.180 Sum_probs=52.7
Q ss_pred CCCCChHHhhhCCCCeEEEeCchHHHHHHHhhccccccceecCCHHHHHHHHhcCCCCCceEEEEecchhHHHH--HhcC
Q 002364 680 SPINGIESLRKSDDPIGYQEGSFAEYYLSQELNISKSRLVALRTPEDYAKALKDGPGKGGVAAVVDERPYVELF--LSSQ 757 (930)
Q Consensus 680 ~~i~s~~dL~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~i~~~~~~~~~--~~~~ 757 (930)
.+|++++||. |+++.+. + .....+ +.++.. .++. ...|...+|++ |.+|+.....+...+- ..+-
T Consensus 163 ~pI~s~~DLk--G~KiR~~-~-~~~~~~-~~lGa~---pv~~-~~~e~y~ALq~----G~VDg~~~~~p~~~~~~~~~ev 229 (365)
T 2hzl_A 163 REINTVADMQ--GLKMRVG-G-FAGKVM-ERLGVV---PQQI-AGGDIYPALEK----GTIDATEWVGPYDDEKLGFFKV 229 (365)
T ss_dssp SCCCSTGGGT--TCEEECC-T-THHHHH-HTTTCE---EECC-CTTSHHHHHHH----TSCSEECCSCHHHHHHHTGGGT
T ss_pred CCCCChHHhC--CCEEecC-C-cHHHHH-HHcCCc---ceec-CHHHHHHHHhC----CCcceeeccCccchhhcChHHh
Confidence 6899999998 9998887 5 344555 455543 2222 45678899999 8999987655554321 1223
Q ss_pred ccEEEeCc-cccccceeeeeCCC
Q 002364 758 CSFRIVGQ-EFTKSGWGFAFPRD 779 (930)
Q Consensus 758 ~~l~~~~~-~~~~~~~~~~~~k~ 779 (930)
+++..... ........+++.++
T Consensus 230 ~k~~~~~~~~~~~~~~~~v~n~~ 252 (365)
T 2hzl_A 230 APYYYYPGWWEGGPTVHFMFNKS 252 (365)
T ss_dssp CCEEEECBTTCSSCEEEEEEEHH
T ss_pred hheeeccCccccccceEEEEcHH
Confidence 45555433 22223346667664
No 203
>2i49_A Bicarbonate transporter; alpha-beta protein, C-clamp, ABC transporter, periplasmic SO binding protein, bicarbonate-binding protein; 1.35A {Synechocystis SP} PDB: 2i48_A 2i4b_A 2i4c_A
Probab=89.47 E-value=1 Score=49.62 Aligned_cols=106 Identities=12% Similarity=0.219 Sum_probs=60.6
Q ss_pred hHHh-hhCCC--CeEEE-eCchHHHHH---HHhhcccc---ccceecCCHHHHHHHHhcCCCCCceEEEEecchhHHHHH
Q 002364 685 IESL-RKSDD--PIGYQ-EGSFAEYYL---SQELNISK---SRLVALRTPEDYAKALKDGPGKGGVAAVVDERPYVELFL 754 (930)
Q Consensus 685 ~~dL-~~~~~--~v~~~-~~s~~~~~l---~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~g~~~a~i~~~~~~~~~~ 754 (930)
++|| .+.|+ +||+. .++....++ .+..+++. .+++.+ ...+...++.+ |++|+++...++.....
T Consensus 153 i~dL~k~~GK~~~Iav~~~gs~~~~~l~~~L~~~Gl~p~~DV~~v~~-~~~~~~~aL~~----G~iDa~~~~eP~~~~a~ 227 (429)
T 2i49_A 153 IKGFNKTNGRKFKAAHTFPNVNQDFWIRYWFAAGGVDPDTDIDLLAV-PPAETVQGMRN----GTMDAFSTGDPWPYRIV 227 (429)
T ss_dssp HHTHHHHHSSCCEEEESSTTSHHHHHHHHHHHHTTCCTTTTSEEEEC-CHHHHHHHHHH----TCCCEEEEETTHHHHHH
T ss_pred HHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHhcCCCCCCcEEEEEC-ChHHHHHHHHc----CCccEEEeccchHHHHH
Confidence 5888 64566 89986 566443322 23345543 234445 67889999999 89999998877776655
Q ss_pred hcCccEEEe--Ccccccc-ceeeeeCCC----Cc-----chHHHHHHHHhhhh
Q 002364 755 SSQCSFRIV--GQEFTKS-GWGFAFPRD----SP-----LAVDLSSAILELAE 795 (930)
Q Consensus 755 ~~~~~l~~~--~~~~~~~-~~~~~~~k~----sp-----l~~~i~~~i~~l~e 795 (930)
.+.....++ ++..... ...++++++ .| +...+.++..++.+
T Consensus 228 ~~g~g~~~~~~~~~~~~~~~~vl~~~~~~~~~~Pe~v~~~~~A~~~A~~~~~~ 280 (429)
T 2i49_A 228 TENIGYMAGLTAQIWPYHPEEYLAIRADWVDKNPKATKALLKGIMEAQQWIDD 280 (429)
T ss_dssp HTTSCEEEEEHHHHSTTCCCCEEEEEHHHHHHCHHHHHHHHHHHHHHHHHHTS
T ss_pred HCCCCEEEEechHhcCCCceEEEEECHHHHHHCHHHHHHHHHHHHHHHHHHhC
Confidence 543322222 2222222 245666543 34 34445555555554
No 204
>1sw5_A Osmoprotection protein (PROX); binding-protein, compatible solutes, cation-PI interactions, classical hydrogen bonds, protein binding; 1.80A {Archaeoglobus fulgidus} SCOP: c.94.1.1 PDB: 1sw4_A 1sw1_A 1sw2_A 3mam_A*
Probab=88.73 E-value=1.3 Score=45.30 Aligned_cols=104 Identities=13% Similarity=0.089 Sum_probs=55.4
Q ss_pred CCCChHHhhhCCCCeEEEeCchHHH--------HHHHhhccccccceecCCHHHHHHHHhcCCCCCceEEEEecchhHHH
Q 002364 681 PINGIESLRKSDDPIGYQEGSFAEY--------YLSQELNISKSRLVALRTPEDYAKALKDGPGKGGVAAVVDERPYVEL 752 (930)
Q Consensus 681 ~i~s~~dL~~~~~~v~~~~~s~~~~--------~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~i~~~~~~~~ 752 (930)
.|+|++||. ++...+..|+..+- -+.+.+++....+... +..+...++.+ |+++++..-.+....
T Consensus 124 ~i~si~DL~--g~~~~~~~g~~~~~~~~~~g~~~~~~~yGl~~~~~~~~-~~~~~~~Al~~----g~vd~~~~~~p~~~~ 196 (275)
T 1sw5_A 124 GVEKISDLA--EFADQLVFGSDPEFASRPDGLPQIKKVYGFEFKEVKQM-EPTLMYEAIKN----KQVDVIPAYTTDSRV 196 (275)
T ss_dssp TCCBGGGGT--TTGGGCEEEECHHHHHSTTSHHHHHHHHTCCCSEEEEC-CGGGHHHHHHT----TSCSEEEEETTCHHH
T ss_pred CCCcHHHHH--hhhcceEeccCcccccccchHHHHHHhcCCCcccccCC-CHHHHHHHHHc----CCCeEEEEeCCCcch
Confidence 789999998 44222211111110 1334556654445555 56678999999 899998887665543
Q ss_pred HHhcCccEEEeCcc---ccccceeeeeCCCCcchHHHHHHHHhhh
Q 002364 753 FLSSQCSFRIVGQE---FTKSGWGFAFPRDSPLAVDLSSAILELA 794 (930)
Q Consensus 753 ~~~~~~~l~~~~~~---~~~~~~~~~~~k~spl~~~i~~~i~~l~ 794 (930)
. + .+++++.+. +..+....+++++..=.+.+-..|.++.
T Consensus 197 ~--~-~~l~~L~d~~~~~~~~~~~~v~~~~~~~~P~~~~~l~~l~ 238 (275)
T 1sw5_A 197 D--L-FNLKILEDDKGALPPYDAIIIVNGNTAKDEKLISVLKLLE 238 (275)
T ss_dssp H--H-TTEEECBCTTCCSCCCEEEEEECTTGGGCHHHHHHHHTTT
T ss_pred h--c-CCeEEccCCcccCCccceeeeeehhhccChHHHHHHHHHH
Confidence 2 2 256666432 2223344556655320034445554443
No 205
>3r26_A Molybdate-binding periplasmic protein; protein binding; 1.70A {Escherichia coli} SCOP: c.94.1.1 PDB: 3axf_A 1amf_A 1wod_A
Probab=88.22 E-value=4.5 Score=40.17 Aligned_cols=70 Identities=24% Similarity=0.212 Sum_probs=44.0
Q ss_pred HHHHHHHHHhCCCcccEEEEecCCCCCCCCHHHHHHHHHcCc-ccEEEeeeeeecCc---eeeee--ecccccccceEEE
Q 002364 495 IDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGV-FDAVVGDITIVTNR---TKIVD--FSQPYAASGLVVV 568 (930)
Q Consensus 495 ~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~-~D~~~~~~~~t~~r---~~~vd--ft~p~~~~~~~~l 568 (930)
-+|++.+.++-|.++++.+ ++-..++.++.+|. +|+.++.-.-..++ ...+. ...+|....++++
T Consensus 22 ~~l~~~Fe~~~gi~V~~~~---------~~s~~l~~~i~~g~~~Dv~~~a~~~~~~~l~~~g~~~~~~~~~~~~~~lvl~ 92 (237)
T 3r26_A 22 QDIATQFKKEKGVDVVSSF---------ASSSTLARQIEAGAPADLFISADQKWMDYAVDKKAIDTATRQTLLGNSLVVV 92 (237)
T ss_dssp HHHHHHHHHHHCCEEEEEE---------ECHHHHHHHHHHTCCCSEEECSSHHHHHHHHHTTCBCGGGCEEEEEECEEEE
T ss_pred HHHHHHHHhccCCeEEEEE---------CCHHHHHHHHHcCCCceEEEECCHHHHHHHHHCCCCCCCceeeeEcceEEEE
Confidence 4677778777786655543 33567888888887 99987632111111 11221 2347888889999
Q ss_pred EeccC
Q 002364 569 VPFRK 573 (930)
Q Consensus 569 v~~~~ 573 (930)
+++..
T Consensus 93 ~~~~~ 97 (237)
T 3r26_A 93 APKAS 97 (237)
T ss_dssp EESSC
T ss_pred EeCCC
Confidence 98765
No 206
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Probab=87.81 E-value=0.83 Score=47.63 Aligned_cols=56 Identities=13% Similarity=0.081 Sum_probs=50.2
Q ss_pred cchhhhHHHHHHhhhcC--cCcccccchhhhHHHHHHHHHhhhhhhhhhhheeeeccc
Q 002364 622 QVITILWFSLSTLFFAH--KENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQ 677 (930)
Q Consensus 622 ~~~~~~~~~~~~l~~~~--~~~~~s~s~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~ 677 (930)
++..++||++.++...| .-.|.+..+|++.+++.++++++.+.-++.+++.++.+.
T Consensus 78 s~~~a~y~s~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~i~~~~~~~~ 135 (321)
T 2qks_A 78 GFGGAFFFSVETLATVGYGDMHPQTVYAHWIATLEIFVGMSSIALATGCAFIKMSQPK 135 (321)
T ss_dssp THHHHHHHHHHHHTTCCCCSSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred chhheeeeeeEEeccccCCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68899999999999776 338999999999999999999999999999999988754
No 207
>1uth_A LYSR-type regulatory protein; transcription regulation, transcriptional regulator; 2.2A {Burkholderia SP} SCOP: c.94.1.1 PDB: 1utb_A 1utb_B 1uth_B 2uyf_A 2uye_A
Probab=87.66 E-value=4.9 Score=41.75 Aligned_cols=84 Identities=11% Similarity=0.120 Sum_probs=54.2
Q ss_pred CceeEEEecCCccccceeeeccCCcceEeeeHHHHHHHHHhCCCcccEEEEecCCCCCCCCHHHHHHHHHcCcccEEEee
Q 002364 464 GKLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGD 543 (930)
Q Consensus 464 g~~lrv~~~~~~~~~p~~~~~~~~~~~~G~~~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~D~~~~~ 543 (930)
.+.||||+.. .. ...+-..++..+.++.+ .+++.+.. ++..+++.+|.+|++|+++..
T Consensus 104 ~~~l~Ig~~~--~~------------~~~~l~~~l~~f~~~~P-~v~l~l~~-------~~~~~~~~~l~~g~~Dl~i~~ 161 (315)
T 1uth_A 104 TRTFNLAMTD--IG------------EMYFMPPLMEALAQRAP-HIQISTLR-------PNAGNLKEDMESGAVDLALGL 161 (315)
T ss_dssp CCEEEEECCH--HH------------HHHHHHHHHHHHHHHCT-TCEEEEEC-------TTSSCHHHHHHHTSCCEEEEC
T ss_pred ceEEEEEech--HH------------HHHHHHHHHHHHHHHCC-CcEEEEEe-------CCcccHHHHHHCCCCCEEEec
Confidence 3579998863 11 12345677888888875 35566654 446678999999999999864
Q ss_pred eeeecCceeeeeecccccccceEEEEeccC
Q 002364 544 ITIVTNRTKIVDFSQPYAASGLVVVVPFRK 573 (930)
Q Consensus 544 ~~~t~~r~~~vdft~p~~~~~~~~lv~~~~ 573 (930)
.... ...+. ..|+....+++++++..
T Consensus 162 ~~~~---~~~l~-~~~l~~~~~~~v~~~~h 187 (315)
T 1uth_A 162 LPEL---QTGFF-QRRLFRHRYVCMFRKDH 187 (315)
T ss_dssp CTTC---CTTEE-EEEEEEECEEEEEETTC
T ss_pred CCCC---CCCce-EEEeeccceEEEEeCCC
Confidence 3211 12222 35777788888887654
No 208
>3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, adenine; HET: ADE; 2.05A {Brucella melitensis biovar abortus}
Probab=87.18 E-value=2 Score=45.82 Aligned_cols=89 Identities=10% Similarity=-0.036 Sum_probs=69.0
Q ss_pred EEEEEEeeCCCcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCChhHHHH
Q 002364 32 VNVGALFTLDSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCSTVAHI 111 (930)
Q Consensus 32 i~IG~i~~~s~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~s~~~~~ 111 (930)
=+||++.....+.......|+..+++++| |..++.+.+..+-.++..+.+.+..|+++++.+|+...... .
T Consensus 150 ~kIGfVgg~~~p~v~~~~~GF~~G~k~~n------p~i~v~~~~~g~~~d~~kg~~~a~~l~~~G~DvIf~~~d~~---G 220 (356)
T 3s99_A 150 GIAGYIGSVPVPEVVQGINSFMLGAQSVN------PDFRVKVIWVNSWFDPGKEADAAKALIDQGVDIITQHTDST---A 220 (356)
T ss_dssp CEEEEEECCCCHHHHHHHHHHHHHHHTTC------TTCEEEEEECSSSCCHHHHHHHHHHHHHTTCSEEEESSSSS---H
T ss_pred CEEEEECCCccHHHHHHHHHHHHHHHHHC------CCCEEEEEECCCCCChHHHHHHHHHHHhCCCcEEEECCCch---H
Confidence 47899987765444456789999999887 45677777766667999999999999999999998766554 4
Q ss_pred HHHhhccCCCcEEecccC
Q 002364 112 VSYVSNELQVPLLSFGVT 129 (930)
Q Consensus 112 v~~~~~~~~iP~is~~a~ 129 (930)
+...+.+.++.+|.+...
T Consensus 221 v~~aa~e~Gv~vIG~D~d 238 (356)
T 3s99_A 221 AIQVAHDRGIKAFGQASD 238 (356)
T ss_dssp HHHHHHHTTCEEEEEESC
T ss_pred HHHHHHHcCCEEEEEcCc
Confidence 566777889988887544
No 209
>1twy_A ABC transporter, periplasmic substrate-binding PR; nysgxrc target, structural genomics, protei structure initiative, PSI; 1.65A {Vibrio cholerae o1 biovar eltor} SCOP: c.94.1.1
Probab=86.99 E-value=15 Score=37.00 Aligned_cols=71 Identities=14% Similarity=0.086 Sum_probs=46.7
Q ss_pred eHHHHHHHHHhCCCcccEEEEecCCCCCCCCHHHHHHHHHcCcccEEEeeeeeecCce-eeeeecccccccceEEEEecc
Q 002364 494 CIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGDITIVTNRT-KIVDFSQPYAASGLVVVVPFR 572 (930)
Q Consensus 494 ~~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~t~~r~-~~vdft~p~~~~~~~~lv~~~ 572 (930)
-.+++..+.++.+ .+++++.. ++..+++.+|.+|++|+++.......... ..+. ..|+....+++++++.
T Consensus 42 l~~~l~~f~~~~P-~i~v~i~~-------~~~~~~~~~l~~g~~Di~i~~~~~~~~~~~~~~~-~~~l~~~~~~~v~~~~ 112 (290)
T 1twy_A 42 MDVLAEKYNQQHP-ETYVAVQG-------VGSTAGISLLKKGVADIAMTSRYLTESEAQNTLH-TFTLAFDGLAIVVNQA 112 (290)
T ss_dssp HHHHHHHHHHHCT-TCEEEEEE-------SCHHHHHHHHHTTSCSEEEESSCCCTTTCCTTCE-EEEEEEEEEEEEECTT
T ss_pred HHHHHHHHHhhCC-CceEEEEe-------cCcHHHHHHHhcCCCcEEEecCCCchhhhhcCce-EEEEEeeeEEEEECCC
Confidence 4567888888873 24455554 56888999999999999886433222110 1222 3577788888888765
Q ss_pred C
Q 002364 573 K 573 (930)
Q Consensus 573 ~ 573 (930)
.
T Consensus 113 ~ 113 (290)
T 1twy_A 113 N 113 (290)
T ss_dssp C
T ss_pred C
Confidence 4
No 210
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=86.07 E-value=0.49 Score=50.74 Aligned_cols=73 Identities=15% Similarity=0.205 Sum_probs=56.8
Q ss_pred HHHHHhhhhhcccCCCCCCCccccchhhhHHHHHHhhhcC--cCcccccchhhhHHHHHHHHHhhhhhhhhhhheeeec
Q 002364 599 VVGIVVWILEHRINDEFRGPPKRQVITILWFSLSTLFFAH--KENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTV 675 (930)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~s~s~R~~~~~w~~~~lil~~~Yta~L~s~Lt~ 675 (930)
+.+++.+.+++..+. ....++..++|+++.++...| .-.|.+..+|++.++++++++++.+...+.+++.+..
T Consensus 142 ~~a~~~~~~e~~~~~----~~f~~~~~s~y~~~~t~ttvGygd~~p~t~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~ 216 (355)
T 3beh_A 142 AVALAAYVIERDIQP----EKFGSIPQAMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSGIGIFGLWAGILATGFYQ 216 (355)
T ss_dssp HHHHHHHHHHTTTCH----HHHSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCCCC----cccccHHHHHHHHHhheeecCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666654321 122468899999999998776 3389999999999999999999999999999887754
No 211
>2de3_A Dibenzothiophene desulfurization enzyme B; alpha-beta, hydrolase; HET: OBP; 1.60A {Rhodococcus SP} PDB: 2de4_A* 2de2_A
Probab=85.54 E-value=3.6 Score=44.02 Aligned_cols=76 Identities=20% Similarity=0.147 Sum_probs=41.8
Q ss_pred HHHHHhcCCCCCceEEEEecchhHHHHHhcCccEEEeCccc---cc-cceeeeeC----CCCc-chHH----HHHHHHhh
Q 002364 727 YAKALKDGPGKGGVAAVVDERPYVELFLSSQCSFRIVGQEF---TK-SGWGFAFP----RDSP-LAVD----LSSAILEL 793 (930)
Q Consensus 727 ~~~~l~~~~~~g~~~a~i~~~~~~~~~~~~~~~l~~~~~~~---~~-~~~~~~~~----k~sp-l~~~----i~~~i~~l 793 (930)
...+|.+ |++||++...++......+ +..++.+.- .. ....++++ +..| +... +.++..++
T Consensus 210 ~~~aL~~----G~vDA~~~~~p~~~~~~~~--g~~~l~~~~~~~~~~~~~~l~~~~~~~~~~p~~v~~~~~a~~~a~~~~ 283 (365)
T 2de3_A 210 QAAVLAS----GDVDALYSWLPWAGELQAT--GARPVVDLGLDERNAYASVWTVSSGLVRQRPGLVQRLVDAAVDAGLWA 283 (365)
T ss_dssp HHHHHHS----SSCSEEEEEHHHHHHHHHT--TEEESSCGGGSGGGCEEEEEEEEHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhC----CCcCEEEEcchhHHHHHhC--CCEEEEeCcccCCCCceEEEEEcHHHHHHCHHHHHHHHHHHHHHHHHH
Confidence 6788988 8999998877766554332 345543321 11 22355555 3344 4444 44555555
Q ss_pred hhcc-chHHHHHHhcc
Q 002364 794 AENG-DLQRIHDKWLM 808 (930)
Q Consensus 794 ~e~G-~~~~~~~~w~~ 808 (930)
.++. ...++..+|++
T Consensus 284 ~~~p~~~~~i~~~~~~ 299 (365)
T 2de3_A 284 RDHSDAVTSLHAANLG 299 (365)
T ss_dssp TTCHHHHHHHHHHHHT
T ss_pred HHCHHHHHHHHHHHhC
Confidence 5542 34455555554
No 212
>3gzg_A Molybdate-binding periplasmic protein; permease; molybdate complex, mutant K127S, metal binding protein; 1.55A {Xanthomonas axonopodis PV} PDB: 2h5y_A
Probab=85.20 E-value=5.6 Score=39.94 Aligned_cols=70 Identities=17% Similarity=0.116 Sum_probs=43.7
Q ss_pred HHHHHHHHHhCCCcccEEEEecCCCCCCCCHHHHHHHHHcCc-ccEEEeeeeeecCc---eeeee--ecccccccceEEE
Q 002364 495 IDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGV-FDAVVGDITIVTNR---TKIVD--FSQPYAASGLVVV 568 (930)
Q Consensus 495 ~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~-~D~~~~~~~~t~~r---~~~vd--ft~p~~~~~~~~l 568 (930)
-+|++.+.++.|.++++.+ ++-..++.++.+|. +|+.++.-.-..++ ...++ -..+|....++++
T Consensus 38 ~~l~~~Fe~~~gi~V~~~~---------~~Sg~l~~qi~~g~~~DV~~sa~~~~~~~l~~~gl~~~~~~~~~a~~~lvl~ 108 (253)
T 3gzg_A 38 DEAATAYEKATGTPVRVSY---------AASSALARQIEQGAPADVFLSADLEWMDYLQQHGLVLPAQRHNLLGNTLVLV 108 (253)
T ss_dssp HHHHHHHHHHHSCCEEEEE---------ECHHHHHHHHHTTCCCSEEECSSHHHHHHHHHTTSSCGGGEEEEEEECEEEE
T ss_pred HHHHHHHHHHhCCeEEEEE---------CChHHHHHHHHcCCCceEEEECCHHHHHHHHHCCCcCCCcceeEEeeEEEEE
Confidence 4677888887786655543 34667888898887 99988632111111 11221 1246777788999
Q ss_pred EeccC
Q 002364 569 VPFRK 573 (930)
Q Consensus 569 v~~~~ 573 (930)
+++..
T Consensus 109 ~~~~~ 113 (253)
T 3gzg_A 109 APASS 113 (253)
T ss_dssp EETTC
T ss_pred EECCC
Confidence 88765
No 213
>2dgd_A 223AA long hypothetical arylmalonate decarboxylas; octamer, alpha/beta structure, lyase; 2.90A {Sulfolobus tokodaii}
Probab=84.93 E-value=6.6 Score=38.49 Aligned_cols=88 Identities=7% Similarity=0.006 Sum_probs=59.0
Q ss_pred HHHHHHHHHhcCccEEEEEEEcCccccchHHHHHHHHhhcceEEEEEEecCCCC-----CCChhHHHHHHHHHHhC--Cc
Q 002364 152 MTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPES-----GVNTGYVMDLLVKVALM--ES 224 (930)
Q Consensus 152 ~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~-----~~~~~~~~~~l~~l~~~--~~ 224 (930)
..++++.++..|-++|+++. .|+....+.+++.+++.|+++.......... ..+...+...++++... ++
T Consensus 96 ~~a~~~a~~~~g~~rvgvlt---~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ga 172 (223)
T 2dgd_A 96 EESVYELLKKLNVRKLWIGT---PYIKERTLEEVEWWRNKGFEIVGYDGLGKIRGIDISNTPIFTIYRLVKRHLNEVLKA 172 (223)
T ss_dssp HHHHHHHHHHTTCCEEEEEE---SSCHHHHHHHHHHHHTTTCEEEEEEECCCCSHHHHHTCCHHHHHHHHHTTHHHHTTS
T ss_pred HHHHHHHHHHcCCCeEEEEe---CCchHHHHHHHHHHHhCCcEEecccCCCCCCcchhhccCHHHHHHHHHHHhcccCCC
Confidence 46667777778889999995 4666666688889999999876544333210 01244566777777666 89
Q ss_pred eEEEEEcChhhHHHHHHH
Q 002364 225 RVIVLHVSPSLGFQVFSV 242 (930)
Q Consensus 225 ~viil~~~~~~~~~~~~~ 242 (930)
|+||+.|..-....+..+
T Consensus 173 daIvLgCT~l~~~~~~~~ 190 (223)
T 2dgd_A 173 DAVYIACTALSTYEAVQY 190 (223)
T ss_dssp SEEEECCTTSCCTTHHHH
T ss_pred CEEEEeCCcccHHHHHHH
Confidence 999998876554333433
No 214
>3kos_A HTH-type transcriptional activator AMPR; alpha-beta sandwich, DNA-binding, transcription regulation; HET: MES; 1.83A {Citrobacter freundii} PDB: 3kot_A
Probab=84.49 E-value=6.2 Score=37.95 Aligned_cols=106 Identities=9% Similarity=0.050 Sum_probs=57.8
Q ss_pred CCChHHhhhCCCCe-EEEeCchHHHHHHHhhcccc---ccceecCCHHHHHHHHhcCCCCCceEEEEecchhHHHHHhcC
Q 002364 682 INGIESLRKSDDPI-GYQEGSFAEYYLSQELNISK---SRLVALRTPEDYAKALKDGPGKGGVAAVVDERPYVELFLSSQ 757 (930)
Q Consensus 682 i~s~~dL~~~~~~v-~~~~~s~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~g~~~a~i~~~~~~~~~~~~~ 757 (930)
.-+++||. +.++ ....+.....++........ ......++.+...+.+.. |...+++-+.....+.....
T Consensus 95 ~~~~~~L~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~----g~Gi~~lp~~~~~~~~~~~~ 168 (219)
T 3kos_A 95 IQTPADIL--KFPLLRSYRRDEWALWMQTVGEAPPSPTHNVMVFDSSVTMLEAAQA----GMGVAIAPVRMFTHLLSSER 168 (219)
T ss_dssp CSSGGGGG--GSCEEEESCTTHHHHHHHHTTCCCCCTTSCEEEESCHHHHHHHHHT----TSCBEEEEGGGCHHHHHTTS
T ss_pred cCCHHHHh--cCceeccCCccCHHHHHHHcCCCCCccccceeEEccHHHHHHHHHc----CCCeEeehHHhhHHHHHcCC
Confidence 34678887 4453 33445555555543322111 233567888999999998 55556666554444433222
Q ss_pred ccEEEeCccccccceeeeeCCCCcchHHHHHHHHhhh
Q 002364 758 CSFRIVGQEFTKSGWGFAFPRDSPLAVDLSSAILELA 794 (930)
Q Consensus 758 ~~l~~~~~~~~~~~~~~~~~k~spl~~~i~~~i~~l~ 794 (930)
.. ....+......++++.+++.+....+...+..+.
T Consensus 169 l~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~l~ 204 (219)
T 3kos_A 169 IV-QPFLTQIDLGSYWITRLQSRPETPAMREFSRWLT 204 (219)
T ss_dssp SB-CCCCCCBCSCEEEEEEETTSCCCHHHHHHHHHHH
T ss_pred ee-ccccCCccCCcEEEEecccccCCHHHHHHHHHHH
Confidence 21 1222233344677888888766555555554443
No 215
>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A*
Probab=84.11 E-value=13 Score=38.77 Aligned_cols=126 Identities=10% Similarity=0.094 Sum_probs=78.7
Q ss_pred EEEEEeeCCCcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCChhHHHHH
Q 002364 33 NVGALFTLDSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCSTVAHIV 112 (930)
Q Consensus 33 ~IG~i~~~s~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~s~~~~~v 112 (930)
+||++.....+....-..|++.++++.|- ..++...+..+-.++..+.+.+.+++++++.+|+..... .+..+
T Consensus 131 ~Ig~i~g~~~~~~~~r~~Gf~~~~~~~~~------~~~~~~~~~~~~~~~~~g~~~a~~ll~~~~daI~~~~d~-~a~Gv 203 (318)
T 2fqx_A 131 AVGFIVGMELGMMPLFEAGFEAGVKAVDP------DIQVVVEVANTFSDPQKGQALAAKLYDSGVNVIFQVAGG-TGNGV 203 (318)
T ss_dssp EEEEEESCCSTTTHHHHHHHHHHHHHHCT------TCEEEEEECSCSSCHHHHHHHHHHHHHTTCCEEEEECGG-GHHHH
T ss_pred EEEEEeCcccHHHHHHHHHHHHHHHHHCC------CCEEEEEEccCccCHHHHHHHHHHHHHCCCcEEEECCCC-CchHH
Confidence 68888765444345567999999998762 455555444333467888889999999889998875443 34444
Q ss_pred HHhhcc-----CCCcEEecccCCCCCCCC---CCCceEeecCCchHHHHHHHHHHHhcCcc
Q 002364 113 SYVSNE-----LQVPLLSFGVTDPTLSSL---QYPFFVRTTQSDSYQMTAVAEMVSYYGWN 165 (930)
Q Consensus 113 ~~~~~~-----~~iP~is~~a~~~~l~~~---~~p~~~r~~p~~~~~~~ai~~~l~~~~w~ 165 (930)
...+.+ .++.+|.+.........- ..|.+..+..+-...+...++.+..=.|+
T Consensus 204 ~~a~~e~g~~P~dv~viG~D~~~~~~~~~~~~~~~~LTsv~~~~~~~~~~a~~~~~~g~~~ 264 (318)
T 2fqx_A 204 IKEARDRRLNGQDVWVIGVDRDQYMDGVYDGSKSVVLTSMVKRADVAAERISKMAYDGSFP 264 (318)
T ss_dssp HHHHHHHHHTTCCCEEEEEESCCGGGGBCSSSCBSEEEEEEECHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHhhhhccCCcEEEEEecchhhhccccCCCCeEEEEEEEEHHHHHHHHHHHHHcCCCC
Confidence 444544 678889876533212100 23455555556566666666666554453
No 216
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=82.96 E-value=1.1 Score=50.32 Aligned_cols=57 Identities=7% Similarity=0.098 Sum_probs=48.9
Q ss_pred ccccchhhhHHHHHHhhhcC--cCcccccchhhhHHHHHHHHHhhhhhhhhhhheeeec
Q 002364 619 PKRQVITILWFSLSTLFFAH--KENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTV 675 (930)
Q Consensus 619 ~~~~~~~~~~~~~~~l~~~~--~~~~~s~s~R~~~~~w~~~~lil~~~Yta~L~s~Lt~ 675 (930)
...++..++|+++.++...| .-.|.+..+|++.++++++++++.+.+.|.+.+.+..
T Consensus 372 ~F~s~~~a~y~~~vT~TTvGYGDi~P~t~~gr~f~~~~~l~G~~~l~l~iavI~~~f~~ 430 (514)
T 2r9r_B 372 QFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNY 430 (514)
T ss_dssp SCSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred cccchhhhhheeeeEEEecccCCCCCCCcchHhhehhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44578899999999998775 3378888999999999999999999999999886654
No 217
>3hhf_B Transcriptional regulator, LYSR family; transcription factor, structur genomics, oxford protein production facility, OPPF; 2.30A {Neisseria meningitidis serogroup B}
Probab=82.59 E-value=3.2 Score=39.76 Aligned_cols=81 Identities=7% Similarity=0.003 Sum_probs=50.1
Q ss_pred CceeEEEecCCccccceeeeccCCcceEeeeHHHHHHHHHhCCCcccEEEEecCCCCCCCCHHHHHHHHHcCcccEEEee
Q 002364 464 GKLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGD 543 (930)
Q Consensus 464 g~~lrv~~~~~~~~~p~~~~~~~~~~~~G~~~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~D~~~~~ 543 (930)
.++||||+.. .. ...+-.+++..+.++.+ .+++.+.. .. .+..|.+|++|+++..
T Consensus 6 ~g~l~Ig~~~--~~------------~~~~l~~~l~~f~~~~P-~v~l~i~~------~~----~~~~l~~g~~D~~i~~ 60 (213)
T 3hhf_B 6 QGVLSVDSAM--PM------------VLHLLAPLAAKFNERYP-HIRLSLVS------SE----GYINLIERKVDIALRA 60 (213)
T ss_dssp CEEEEEEECH--HH------------HHHTHHHHHHHHHHHCT-TEEEEEEC------CS----TTHHHHTTSSSEEEEC
T ss_pred CceEEEecCH--HH------------HHHHHHHHHHHHHHHCC-CcEEEEEe------CC----cHHHHHhCCccEEEEE
Confidence 3578888874 11 12356688888988875 25555542 11 1345889999999864
Q ss_pred eeeecCceeeeeecccccccceEEEEeccC
Q 002364 544 ITIVTNRTKIVDFSQPYAASGLVVVVPFRK 573 (930)
Q Consensus 544 ~~~t~~r~~~vdft~p~~~~~~~~lv~~~~ 573 (930)
..... ..+. +.++....+++++++..
T Consensus 61 ~~~~~---~~~~-~~~l~~~~~~~v~~~~~ 86 (213)
T 3hhf_B 61 GELDD---SGLR-ARHLFDSRFRVIASPEY 86 (213)
T ss_dssp C--CC---SSEE-EEEEEEECEEEEECHHH
T ss_pred ecCCC---ccce-EEeeecceEEEEeCHHH
Confidence 33222 2222 46788888898887654
No 218
>2eq5_A 228AA long hypothetical hydantoin racemase; structural genomics, NPPSFA, national project on P structural and functional analyses; 2.20A {Pyrococcus horikoshii}
Probab=80.76 E-value=12 Score=36.73 Aligned_cols=115 Identities=18% Similarity=0.168 Sum_probs=63.5
Q ss_pred HHHHHhcCcEEEEcCCChhHHHHHHHhhccCCCcEEecccCCCCCCCCCCCceEeecCCchHHHHHHHHHHHhcCccEEE
Q 002364 89 ALRFMETDIVAIIGPQCSTVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVS 168 (930)
Q Consensus 89 a~~li~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~a~~~~l~~~~~p~~~r~~p~~~~~~~ai~~~l~~~~w~~v~ 168 (930)
+..|.+.++.+|+-+-++. ..+..+-+..++|++... .+.++.+...+ ++|+
T Consensus 68 ~~~l~~~g~d~iviaCnta--~~~~~l~~~~~iPvi~i~-------------------------~~~~~~a~~~~-~rig 119 (228)
T 2eq5_A 68 AKEFEREGVDAIIISCAAD--PAVEKVRKLLSIPVIGAG-------------------------SSVSALALAYG-RRVG 119 (228)
T ss_dssp HHHHHHTTCSEEEECSTTC--TTHHHHHHHCSSCEEEHH-------------------------HHHHHHHHTTC-SSEE
T ss_pred HHHHHHCCCCEEEEeCCch--HHHHHHHHhCCCCEeCcc-------------------------HHHHHHHHHhC-CeEE
Confidence 3445455888887655555 444555566789988621 11222222456 8889
Q ss_pred EEEEcCccccchHHHHHHHH-hhcceEEEEEEe--c-CCCCCCChhHHHHHHHHHHhCCceEEEEEcChhh
Q 002364 169 VIFVDNEYGRNGVSALNDKL-AERRCRISYKSG--I-PPESGVNTGYVMDLLVKVALMESRVIVLHVSPSL 235 (930)
Q Consensus 169 ii~~d~~~g~~~~~~l~~~l-~~~g~~v~~~~~--~-~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~ 235 (930)
++....... ..+.+.+ ++.|.++..... + ..........+...+.++.+.++|+||+.|..-.
T Consensus 120 Vlat~~t~~----~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~~~l~~~~~~l~~~~~d~IvLgCT~~~ 186 (228)
T 2eq5_A 120 VLNLTEETP----KVIRSILGNNLIAEDHPSGVSNTLDLLTDWGRREVINAAKRLKEKGVEVIALGCTGMS 186 (228)
T ss_dssp EECSSSCCC----HHHHHHHGGGEEEEECCTTCCSGGGGGSHHHHHHHHHHHHHHHHTTCSEEEECCTHHH
T ss_pred EEecCcccH----HHHHHHHHHHhCccccCCceeeHHHhcChHHHHHHHHHHHHHHHcCCCEEEECCCCcc
Confidence 887654322 3467777 777765321000 0 0000001233555666666678999999887655
No 219
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=79.27 E-value=14 Score=30.19 Aligned_cols=97 Identities=10% Similarity=0.091 Sum_probs=66.5
Q ss_pred eEeecCCchHHHHHHHHHHHhcCccEEEEEEEcCccccchHHHHHHHHhhcceEEEEEEecCCCCCCChhHHHHHHHHHH
Q 002364 141 FVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVA 220 (930)
Q Consensus 141 ~~r~~p~~~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~ 220 (930)
+|-...+|.....-++.-++..| -+|.++|+|.+-- -...-.+.++++|+.+... . ...|+..-+.+|-
T Consensus 4 ifvvfssdpeilkeivreikrqg-vrvvllysdqdek--rrrerleefekqgvdvrtv---e-----dkedfrenireiw 72 (162)
T 2l82_A 4 IFVVFSSDPEILKEIVREIKRQG-VRVVLLYSDQDEK--RRRERLEEFEKQGVDVRTV---E-----DKEDFRENIREIW 72 (162)
T ss_dssp EEEEEESCHHHHHHHHHHHHHTT-CEEEEEECCSCHH--HHHHHHHHHHTTTCEEEEC---C-----SHHHHHHHHHHHH
T ss_pred EEEEecCCHHHHHHHHHHHHhCC-eEEEEEecCchHH--HHHHHHHHHHHcCCceeee---c-----cHHHHHHHHHHHH
Confidence 45555677777888888888888 5788899876522 2233345678899887532 1 3678888888775
Q ss_pred h--CCceEEEEEcCh--hhHHHHHHHHHHcCc
Q 002364 221 L--MESRVIVLHVSP--SLGFQVFSVAKYLGM 248 (930)
Q Consensus 221 ~--~~~~viil~~~~--~~~~~~~~~a~~~g~ 248 (930)
. .+-|++++.... +-...++..|++.|.
T Consensus 73 erypqldvvvivttddkewikdfieeakergv 104 (162)
T 2l82_A 73 ERYPQLDVVVIVTTDDKEWIKDFIEEAKERGV 104 (162)
T ss_dssp HHCTTCCEEEEEECCCHHHHHHHHHHHHHTTC
T ss_pred HhCCCCcEEEEEecCcHHHHHHHHHHHHhcCc
Confidence 4 455777665443 447779999999885
No 220
>2hpg_A ABC transporter, periplasmic substrate-binding protein; periplasmic binding protein, thermophilic proteins, trap- transport; HET: MSE; 1.90A {Thermotoga maritima}
Probab=79.23 E-value=1 Score=47.53 Aligned_cols=88 Identities=16% Similarity=-0.032 Sum_probs=53.5
Q ss_pred CCCCChHHhhhCCCCeEEEeCchHHHHHHHhhccccccceecCCHHHHHHHHhcCCCCCceEEEEecchhHHHH-HhcCc
Q 002364 680 SPINGIESLRKSDDPIGYQEGSFAEYYLSQELNISKSRLVALRTPEDYAKALKDGPGKGGVAAVVDERPYVELF-LSSQC 758 (930)
Q Consensus 680 ~~i~s~~dL~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~i~~~~~~~~~-~~~~~ 758 (930)
.+|++++||. |+++.+..+......+ +.++.. .++. ...|...+|++ |.+|+.....+.+.-. ..+-.
T Consensus 148 ~pI~s~~DLk--G~KiRv~~~~~~~~~~-~alGa~---pv~m-~~~Evy~ALq~----G~VDg~~~p~~~~~~~~~~ev~ 216 (327)
T 2hpg_A 148 KPIRKPEDLN--GLRIRTPGAPAWQESI-RSLGAI---PVAV-NFGEIYTAVQT----RAVDGAELTYANVYNGGLYEVL 216 (327)
T ss_dssp SCCSSGGGGT--TCEEECCSSHHHHHHH-HHHTSE---EECC-CGGGHHHHHHT----TSCSEEEECHHHHHHTTGGGTC
T ss_pred CCCCCHHHHC--CCEEEeCCCHHHHHHH-HHcCCE---eeec-CHHHHHHHHHc----CCeeEEECCHHHHHHcChhhhc
Confidence 6899999998 9988876544444555 456543 2222 56789999999 8999998765443211 11223
Q ss_pred cEEEeCccccccceeeeeCCC
Q 002364 759 SFRIVGQEFTKSGWGFAFPRD 779 (930)
Q Consensus 759 ~l~~~~~~~~~~~~~~~~~k~ 779 (930)
++....... .....+++.++
T Consensus 217 ky~~~~~~~-~~~~~~~~n~~ 236 (327)
T 2hpg_A 217 KYMSETGHF-LLINFEIVSAD 236 (327)
T ss_dssp CEEEEEEEE-EEEEEEEEEHH
T ss_pred cEEEecCcc-hhceEEEEeHH
Confidence 444433322 23456666654
No 221
>2hqb_A Transcriptional activator of COMK gene; berkeley structure genomics center target 1957B, structural genomics, PSI; 2.70A {Bacillus halodurans}
Probab=78.82 E-value=19 Score=36.81 Aligned_cols=121 Identities=8% Similarity=-0.062 Sum_probs=75.7
Q ss_pred EEEEEeeCCCcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCChhHHHHH
Q 002364 33 NVGALFTLDSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCSTVAHIV 112 (930)
Q Consensus 33 ~IG~i~~~s~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~s~~~~~v 112 (930)
+||++.....+. -..|++.++++.| +. ++.+.+..+-.++..+.+++.+|+++++.+|+.... ..+..+
T Consensus 128 ~Ig~i~g~~~~~---r~~Gf~~~~~~~~------~~-~~~~~~~~~~~~~~~g~~~a~~ll~~~~daI~~~~D-~~a~Gv 196 (296)
T 2hqb_A 128 KVGVIAAFPWQP---EVEGFVDGAKYMN------ES-EAFVRYVGEWTDADKALELFQELQKEQVDVFYPAGD-GYHVPV 196 (296)
T ss_dssp EEEEEESCTTCH---HHHHHHHHHHHTT------CC-EEEEEECSSSSCHHHHHHHHHHHHTTTCCEEECCCT-TTHHHH
T ss_pred eEEEEcCcCchh---hHHHHHHHHHHhC------CC-eEEEEeeccccCHHHHHHHHHHHHHCCCcEEEECCC-CCCHHH
Confidence 688887654322 5688999998876 23 544444333346778888999999888999997544 444555
Q ss_pred HHhhccCCCcEEecccCCCCCCCCCCCceEeecCCchHHHHHHHHHHHhcCccE
Q 002364 113 SYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNA 166 (930)
Q Consensus 113 ~~~~~~~~iP~is~~a~~~~l~~~~~p~~~r~~p~~~~~~~ai~~~l~~~~w~~ 166 (930)
...+.+.++.+|.+......+ ...|.+-.+..+-...+...++.+..-.|+.
T Consensus 197 ~~a~~e~Gv~viG~D~~~~~~--~~~~~LTsv~~~~~~~~~~a~~~~~~g~~~~ 248 (296)
T 2hqb_A 197 VEAIKDQGDFAIGYVGDQADL--GGSTILTSTVQHVDDLYVLVAKRFQEGKLES 248 (296)
T ss_dssp HHHHHHHTCEEEEEESCCSSS--SCSSEEEEEEECHHHHHHHHHHHTTTTCCCC
T ss_pred HHHHHHcCCEEEEEecchhhh--CCCeEEEEEEEEhHHHHHHHHHHHHcCCCCC
Confidence 666777788888876521111 1124455554555555555555555545653
No 222
>3onm_A Transcriptional regulator LRHA; LYSR, ROVM, transcription factor, virulence factor; 2.40A {Yersinia pseudotuberculosis}
Probab=78.68 E-value=41 Score=32.52 Aligned_cols=82 Identities=11% Similarity=0.085 Sum_probs=57.2
Q ss_pred CceeEEEecCCccccceeeeccCCcceEeeeHHHHHHHHHhCCCcccEEEEecCCCCCCCCHHHHHHHHHcCcccEEEee
Q 002364 464 GKLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGD 543 (930)
Q Consensus 464 g~~lrv~~~~~~~~~p~~~~~~~~~~~~G~~~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~D~~~~~ 543 (930)
.++||||+.. .. ...+-.+++..+.++.+ .+++.+.. ++..+++.+|.+|++|+++..
T Consensus 26 ~g~l~Ig~~~--~~------------~~~~l~~~l~~f~~~~P-~i~l~i~~-------~~~~~~~~~L~~g~~Dl~i~~ 83 (238)
T 3onm_A 26 EGSLIIGASD--DT------------ADTLLPFLLNRVATLYP-RLAIDVRV-------KRSPFIADMLSSGEVDLAITT 83 (238)
T ss_dssp -CCEEEEECH--HH------------HTTHHHHHHHHHHHHCT-TCCEEEEE-------CCHHHHHHHHHHTSCSEEEEC
T ss_pred ceeEEEeccc--hh------------hHHHHHHHHHHHHHHCC-CcEEEEEE-------CCHHHHHHHHHCCCccEEEEe
Confidence 4579999884 11 12456678888888875 35566665 668899999999999999864
Q ss_pred eeeecCceeeeeecccccccceEEEEeccC
Q 002364 544 ITIVTNRTKIVDFSQPYAASGLVVVVPFRK 573 (930)
Q Consensus 544 ~~~t~~r~~~vdft~p~~~~~~~~lv~~~~ 573 (930)
... ..+ -+.++....+++++++..
T Consensus 84 ~~~-----~~~-~~~~l~~~~~~~v~~~~~ 107 (238)
T 3onm_A 84 AKV-----DSH-PHVILRTSPTLWYCSVDY 107 (238)
T ss_dssp SCC------CC-CEEEEEEECEEEEEETTC
T ss_pred cCC-----CCc-ceEEeecCCEEEEEcCCC
Confidence 321 112 346778888999988765
No 223
>2xwv_A Sialic acid-binding periplasmic protein SIAP; transport protein, trap, sugar transport; HET: SLB; 1.05A {Haemophilus influenzae} PDB: 2xxk_A* 2xa5_A* 2wyp_A* 2wx9_A* 2xwo_A* 2xwk_A* 2v4c_A* 2wyk_A* 2xwi_A* 3b50_A* 2cey_A 2cex_A
Probab=78.29 E-value=13 Score=38.67 Aligned_cols=60 Identities=15% Similarity=0.132 Sum_probs=42.8
Q ss_pred CCCCChHHhhhCCCCeEEEeCchHHHHHHHhhccccccceecCCHHHHHHHHhcCCCCCceEEEEecchhH
Q 002364 680 SPINGIESLRKSDDPIGYQEGSFAEYYLSQELNISKSRLVALRTPEDYAKALKDGPGKGGVAAVVDERPYV 750 (930)
Q Consensus 680 ~~i~s~~dL~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~i~~~~~~ 750 (930)
.+|++++||. |+++.+.........+ +.++.. .++. ...|...+|++ |.+|+.....+.+
T Consensus 133 ~pI~s~~Dlk--GlKiRv~~~~~~~~~~-~alGa~---pv~m-~~~Evy~ALq~----G~vDg~~~~~~~~ 192 (312)
T 2xwv_A 133 RAINSIADMK--GLKLRVPNAATNLAYA-KYVGAS---PTPM-AFSEVYLALQT----NAVDGQENPLAAV 192 (312)
T ss_dssp SCCCSGGGGT--TCEEEECSCHHHHHHH-HHHTCE---EEEC-CGGGHHHHHHT----TSSSEEEEEHHHH
T ss_pred CCcCCHHHhC--CCEEEeCCCHHHHHHH-HHcCCe---eeec-CHHHHHHHHHc----CCcceEeccHHHH
Confidence 6899999998 9999887543334455 455543 2222 56788999999 8999998776655
No 224
>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics,struct proteomics in europe, spine; 2.70A {Klebsiella pneumoniae}
Probab=77.45 E-value=7.5 Score=41.86 Aligned_cols=100 Identities=15% Similarity=0.045 Sum_probs=68.8
Q ss_pred CceEeecCCchHHHHHHHHHHHhcCccEEEEEEEcCcccc--chHHHHHHHHhhcceEEEEEEecCCCCCCChhHHHHHH
Q 002364 139 PFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGR--NGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLL 216 (930)
Q Consensus 139 p~~~r~~p~~~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~--~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l 216 (930)
|+-+...+... ..+.++++.++.+++.+|++...+.. +..+.+.+.+++.|+++..-..+.++ .+.+.+...+
T Consensus 11 p~~i~~G~g~~---~~l~~~l~~~g~~~~livtd~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~--p~~~~v~~~~ 85 (387)
T 3bfj_A 11 PNVNFFGPNAI---SVVGERCQLLGGKKALLVTDKGLRAIKDGAVDKTLHYLREAGIEVAIFDGVEPN--PKDTNVRDGL 85 (387)
T ss_dssp CSEEEESTTGG---GGHHHHHHHTTCSEEEEECCTTTC--CCSSHHHHHHHHHHTTCEEEEECCCCSS--CBHHHHHHHH
T ss_pred CCeEEECCCHH---HHHHHHHHHcCCCEEEEEECcchhhccchHHHHHHHHHHHcCCeEEEECCccCC--CCHHHHHHHH
Confidence 33344444432 33566777788899999986655555 47899999999999887433344444 4578888889
Q ss_pred HHHHhCCceEEEEEcCh--hhHHHHHHHH
Q 002364 217 VKVALMESRVIVLHVSP--SLGFQVFSVA 243 (930)
Q Consensus 217 ~~l~~~~~~viil~~~~--~~~~~~~~~a 243 (930)
+.+++.++|+||-.+.+ -+++.++...
T Consensus 86 ~~~~~~~~d~IIavGGGsv~D~aK~iA~~ 114 (387)
T 3bfj_A 86 AVFRREQCDIIVTVGGGSPHDCGKGIGIA 114 (387)
T ss_dssp HHHHHTTCCEEEEEESHHHHHHHHHHHHH
T ss_pred HHHHhcCCCEEEEeCCcchhhHHHHHHHH
Confidence 99999999999976554 4666666554
No 225
>3k6v_A Solute-binding protein MA_0280; MODA, molybdate, periplasmic BIN protein, ABC transporter, transport protein, ligand, metal- protein; HET: CIT; 1.69A {Methanosarcina acetivorans} PDB: 3k6u_A* 3k6w_A 3k6x_A
Probab=77.33 E-value=43 Score=35.27 Aligned_cols=69 Identities=13% Similarity=0.101 Sum_probs=42.5
Q ss_pred HHHHHHHHhC-CCcccEEEEecCCCCCCCCHHHHHHHHH-cC-cccEEEeeeeeecCc---eeeeeecccccccceEEEE
Q 002364 496 DVFTAAVNLL-PYAVPYQFVAFGDGHKNPSYTQLVDSIT-TG-VFDAVVGDITIVTNR---TKIVDFSQPYAASGLVVVV 569 (930)
Q Consensus 496 dl~~~l~~~l-~f~~~~~~~~~~~~~~~~~~~~~~~~l~-~g-~~D~~~~~~~~t~~r---~~~vdft~p~~~~~~~~lv 569 (930)
+|.+.+.++. |.++++.+- .-..++.++. .| .+|+.++.-.-..++ ....+...+|....+++++
T Consensus 59 ~l~~~Fe~~~pgv~V~~~~g---------gSg~l~~qi~e~G~~aDVf~sad~~~~~~l~~~g~~~~~~~~a~n~lVliv 129 (354)
T 3k6v_A 59 ELEAEFEAQHPGVDVQREAA---------GSAQSVRKITELGKKADVLASADYALIPSLMVPEYADWYAAFARNQMILAY 129 (354)
T ss_dssp HHHHHHHHHSTTCEEEEEEE---------CHHHHHHHHHTSCCCCSEEEESSTTHHHHHTTTTTCSCEEEEEECCEEEEE
T ss_pred HHHHHHHHHCCCcEEEEEeC---------CHHHHHHHHHhcCCCccEEEECCHHHHHHHHhCCCCCCceEeECCeEEEEE
Confidence 6778888887 866555443 2456778885 35 699877532111111 1123445678888899999
Q ss_pred eccC
Q 002364 570 PFRK 573 (930)
Q Consensus 570 ~~~~ 573 (930)
|+..
T Consensus 130 ~~~~ 133 (354)
T 3k6v_A 130 TNES 133 (354)
T ss_dssp CTTS
T ss_pred ECCC
Confidence 8765
No 226
>3cij_A UPF0100 protein AF_0094; archaeal periplasmic binding protein, unknown function, metal binding protein, transport protein; 1.07A {Archaeoglobus fulgidus} PDB: 2ons_A 2onk_E 2onr_A
Probab=77.30 E-value=53 Score=33.33 Aligned_cols=70 Identities=11% Similarity=0.056 Sum_probs=43.8
Q ss_pred HHHHHHHHHhC-CCcccEEEEecCCCCCCCCHHHHHHHHHc-Cc-ccEEEeeee--eec-CceeeeeecccccccceEEE
Q 002364 495 IDVFTAAVNLL-PYAVPYQFVAFGDGHKNPSYTQLVDSITT-GV-FDAVVGDIT--IVT-NRTKIVDFSQPYAASGLVVV 568 (930)
Q Consensus 495 ~dl~~~l~~~l-~f~~~~~~~~~~~~~~~~~~~~~~~~l~~-g~-~D~~~~~~~--~t~-~r~~~vdft~p~~~~~~~~l 568 (930)
-++++.+.++. |.++++.+ ++...++.++.. |. +|+.+..-. +.. .....++...||....++++
T Consensus 20 ~~l~~~F~~~~~gi~V~~~~---------~~s~~l~~~i~~~g~~~Dv~~~a~~~~~~~l~~~gl~~~~~~~~~~~lvl~ 90 (295)
T 3cij_A 20 KAFKRAFEEKHPNVEVQTEA---------AGSAATIRKVTELGRKADVIATADYTLIQKMMYPEFANWTIMFAKNQIVLA 90 (295)
T ss_dssp HHHHHHHHHHCTTCEEEEEE---------ECHHHHHHHHHTSCCCCSEEEESSTHHHHHHHTTTTCCCCEEEEECCEEEE
T ss_pred HHHHHHHHHHCCCceEEEEe---------CcHHHHHHHHHhCCCCCCEEEEcChhhHHHHHhCCCcceeeEEEeeeEEEE
Confidence 36777777774 86655533 346678888988 75 999875321 110 11122345667888888888
Q ss_pred EeccC
Q 002364 569 VPFRK 573 (930)
Q Consensus 569 v~~~~ 573 (930)
+++..
T Consensus 91 ~~~~~ 95 (295)
T 3cij_A 91 YRNDS 95 (295)
T ss_dssp ECTTS
T ss_pred EeCCC
Confidence 87654
No 227
>1nh8_A ATP phosphoribosyltransferase; prtase, de novo His biosynthesis, PRPP, structural genomics, PSI, protei structure initiative; HET: AMP HIS; 1.80A {Mycobacterium tuberculosis H37RV} SCOP: c.94.1.1 d.58.5.3 PDB: 1nh7_A*
Probab=77.02 E-value=8.9 Score=39.00 Aligned_cols=102 Identities=11% Similarity=0.026 Sum_probs=62.4
Q ss_pred CCCChHHhhhCCCCeEEEeCchHHHHHHHhhccccccceecCCHHHHHHHHhcCCCCCceEEEEecchhHHHHHhcCccE
Q 002364 681 PINGIESLRKSDDPIGYQEGSFAEYYLSQELNISKSRLVALRTPEDYAKALKDGPGKGGVAAVVDERPYVELFLSSQCSF 760 (930)
Q Consensus 681 ~i~s~~dL~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~i~~~~~~~~~~~~~~~l 760 (930)
.+++++||. +++|+..-......||. +.+.+ .+++.....-|..-.+ |-.|++++-.....-+..+ +|
T Consensus 120 ~~~~~~~l~--~~RIATkYp~l~r~yf~-~~gi~-~~Ii~l~GsvE~aP~~------GlADaIvDiVsTG~TLraN--gL 187 (304)
T 1nh8_A 120 RNWTTADLA--GMRIATAYPNLVRKDLA-TKGIE-ATVIRLDGAVEISVQL------GVADAIADVVGSGRTLSQH--DL 187 (304)
T ss_dssp SCCCGGGGT--TCEEEESCHHHHHHHHH-HHTCC-CEEEECSSCCTHHHHT------TSCSEEEEEESSSHHHHHT--TE
T ss_pred CcCChHHhC--CCEEEeCcHHHHHHHHH-HCCCe-EEEEECCCceeeccCC------CcccEEEEEeCChHHHHHC--cC
Confidence 455778885 78888877777888884 45554 5566555544544334 6778888866555444333 57
Q ss_pred EEeCccccccceeeeeCCCCc-c--hHHHHHHHHhhh
Q 002364 761 RIVGQEFTKSGWGFAFPRDSP-L--AVDLSSAILELA 794 (930)
Q Consensus 761 ~~~~~~~~~~~~~~~~~k~sp-l--~~~i~~~i~~l~ 794 (930)
..+++.+....-.+...+.+. . .+.++..+.++.
T Consensus 188 ~~i~e~I~~SsA~LI~n~~s~~~~k~~~i~~l~~rl~ 224 (304)
T 1nh8_A 188 VAFGEPLCDSEAVLIERAGTDGQDQTEARDQLVARVQ 224 (304)
T ss_dssp EEEEEEEEEECEEEEEEC--------CHHHHHHHHHH
T ss_pred EEcccEEEEEEEEEEEccccchhhhHHHHHHHHHHHH
Confidence 777555556666677777652 2 235666666665
No 228
>3ox4_A Alcohol dehydrogenase 2; iron, NAD, oxidoreductase; HET: NAD; 2.00A {Zymomonas mobilis} PDB: 3owo_A*
Probab=76.97 E-value=4.6 Score=43.47 Aligned_cols=91 Identities=10% Similarity=0.041 Sum_probs=66.9
Q ss_pred HHHHHHHHHhcCccEEEEEEEcCccccchHHHHHHHHhhcceEEEEEEecCCCCCCChhHHHHHHHHHHhCCceEEEEEc
Q 002364 152 MTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHV 231 (930)
Q Consensus 152 ~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~ 231 (930)
...+.++++.+|.+++.+|+.......+..+.+.+.|++.|+++..-..+.++ .+.+.+...++.+++.++|+||-.+
T Consensus 19 ~~~l~~~~~~~g~~~~liVtd~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~--p~~~~v~~~~~~~~~~~~D~IIavG 96 (383)
T 3ox4_A 19 LEKAIKDLNGSGFKNALIVSDAFMNKSGVVKQVADLLKAQGINSAVYDGVMPN--PTVTAVLEGLKILKDNNSDFVISLG 96 (383)
T ss_dssp HHHHHHTTTTSCCCEEEEEEEHHHHHTTHHHHHHHHHHTTTCEEEEEEEECSS--CBHHHHHHHHHHHHHHTCSEEEEEE
T ss_pred HHHHHHHHHHcCCCEEEEEECCchhhCchHHHHHHHHHHcCCeEEEECCccCC--CCHHHHHHHHHHHHhcCcCEEEEeC
Confidence 34566678888999999998655333346789999999999887544445555 5578898989999888999999876
Q ss_pred Ch--hhHHHHHHHHH
Q 002364 232 SP--SLGFQVFSVAK 244 (930)
Q Consensus 232 ~~--~~~~~~~~~a~ 244 (930)
.+ -+++.++....
T Consensus 97 GGsv~D~aK~ia~~~ 111 (383)
T 3ox4_A 97 GGSPHDCAKAIALVA 111 (383)
T ss_dssp SHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHH
Confidence 65 45666665544
No 229
>3muq_A Uncharacterized conserved protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.05A {Vibrio parahaemolyticus}
Probab=76.23 E-value=27 Score=34.34 Aligned_cols=74 Identities=12% Similarity=0.032 Sum_probs=50.1
Q ss_pred EeeeHHHHHHHHHhCCCcccEEEEecCCCCCCCCHHHHHHHHHcCcccEEEeeeeeecCce---eeeeecccccccceEE
Q 002364 491 QGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGDITIVTNRT---KIVDFSQPYAASGLVV 567 (930)
Q Consensus 491 ~G~~~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~t~~r~---~~vdft~p~~~~~~~~ 567 (930)
.|+--+|+..+.++.+.++.+.+. .-..++.++.+|.+|+.+..-....+.. ....-..|+....+++
T Consensus 18 ~~ll~~L~~~Fek~~gv~V~~~~~---------gSg~ll~qi~~G~aDv~isa~~~~~~~l~~~g~~~~~~~~a~N~lVl 88 (237)
T 3muq_A 18 SGLLDYLLPQFEKDTGYKVDVIAA---------GTGKALKMGENGDVDLVMTHAPKAEGTFVEKGYGVLPRKLMYNDFVI 88 (237)
T ss_dssp HTHHHHHHHHHHHHHCCEEEEEEE---------CHHHHHHHHHTTSSSEEEECCHHHHHHHHHTTSEEEEEEEEEEEEEE
T ss_pred hhHHHHHHHHHHHHhCceEEEEEc---------ChHHHHHHHhcCCCCEEEecCchhHHHHHhcCCccccEEEEeCCEEE
Confidence 466778888998888855544443 3667899999999999875433222111 1112346888899999
Q ss_pred EEeccC
Q 002364 568 VVPFRK 573 (930)
Q Consensus 568 lv~~~~ 573 (930)
++|+.+
T Consensus 89 V~P~~~ 94 (237)
T 3muq_A 89 VGPKAD 94 (237)
T ss_dssp EECTTC
T ss_pred EEeCCC
Confidence 999876
No 230
>1xs5_A 29 kDa protein, membrane lipoprotein TPN32; periplasmic binding protein, methionine, membrane protein; 1.85A {Treponema pallidum} SCOP: c.94.1.1
Probab=74.94 E-value=52 Score=32.44 Aligned_cols=36 Identities=17% Similarity=0.217 Sum_probs=26.6
Q ss_pred HHHHHHhCCCcccEEEEecCCCCCCCCHHHHHHHHHcCcccEEE
Q 002364 498 FTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVV 541 (930)
Q Consensus 498 ~~~l~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~D~~~ 541 (930)
++...++.|+ +++++.+ .+|.....+|.+|++|+..
T Consensus 21 ~~~~~~~~Gl--~ve~~~f------~d~~~~n~AL~~G~iD~n~ 56 (241)
T 1xs5_A 21 AKEEVKKQHI--ELRIVEF------TNYVALNEAVMRGDILMNF 56 (241)
T ss_dssp HHHHHHTTTE--EEEEEEC------SCHHHHHHHHHHTSSSEEE
T ss_pred HHHHHHHcCC--eEEEEEc------CChHHHHHHHHcCCCCEec
Confidence 3445566684 4666665 4599999999999999864
No 231
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=74.94 E-value=2.9 Score=42.30 Aligned_cols=67 Identities=7% Similarity=0.062 Sum_probs=51.0
Q ss_pred cchhhhHHHHHHhhhcCcC--cccccc-------hhhhHHHHHHHHHhhhhhhhhhhheeeecccccCCCCChHHh
Q 002364 622 QVITILWFSLSTLFFAHKE--NTVSTL-------GRLVLIIWLFVVLIINSSYTASLTSILTVQQLYSPINGIESL 688 (930)
Q Consensus 622 ~~~~~~~~~~~~l~~~~~~--~~~s~s-------~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL 688 (930)
.+.+++|+++.++...|-. .|.+.. .|++.++|+++++.+.++..+.+++.+...++...+..-+|+
T Consensus 201 s~~da~y~~~iTltTvGyGD~~p~t~~~~~~~~l~r~~~~~~il~Gl~~~~~~~~~i~~~~~~~~l~~~~~~~~~~ 276 (280)
T 3ukm_A 201 NFLESFYFCFISLSTIGLGDYVPGEGYNQKFRELYKIGITCYLLLGLIAMLVVLETFCELHELKKFRKMFYVKKDK 276 (280)
T ss_dssp CHHHHHHHHHHHHTTCCCCSCCSSCSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHTTC-----
T ss_pred chhhhhhheeeeeecccCCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 4789999999999877643 566554 599999999999999999999999988887766555444443
No 232
>3szp_A Transcriptional regulator, LYSR family; winged helix-turn helix, DNA-binding, transcription factor; 2.20A {Vibrio cholerae} PDB: 3t1b_B
Probab=74.87 E-value=2.3 Score=43.34 Aligned_cols=73 Identities=8% Similarity=-0.063 Sum_probs=43.3
Q ss_pred cceecCCHHHHHHHHhcCCCCCceEEEEecchhHHHHHhcCccEEEeCc--cccccceeeeeCCCCcchHHHHHHHHhhh
Q 002364 717 RLVALRTPEDYAKALKDGPGKGGVAAVVDERPYVELFLSSQCSFRIVGQ--EFTKSGWGFAFPRDSPLAVDLSSAILELA 794 (930)
Q Consensus 717 ~~~~~~~~~~~~~~l~~~~~~g~~~a~i~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~k~spl~~~i~~~i~~l~ 794 (930)
.....++.+.....+.. |...+++-+.....+. ... .+..+.. ......++++.+++.+..+.+...+..+.
T Consensus 213 ~~~~~~~~~~~~~~v~~----g~Giailp~~~~~~~~-~~~-~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~l~ 286 (291)
T 3szp_A 213 GRFQASALNVVRSACSE----GLGITLMPDVMLREFL-EDG-SLVQVLSDWSSNPRDIYMLYNHKDHQPEKVRLFIDFVI 286 (291)
T ss_dssp CSEEESSHHHHHHHHHT----TCCEEEEEGGGTHHHH-HTT-TSEECCTTCBCCCEEEEEEECCGGGCCHHHHHHHHHHH
T ss_pred CceEECcHHHHHHHHHc----CCcEEEccHHHHHHHH-hCC-CeEEecCCccCCCCcEEEEECCCCCCCHHHHHHHHHHH
Confidence 34556788888999988 6666666555444433 222 3333322 23345677888888766666666555544
Q ss_pred h
Q 002364 795 E 795 (930)
Q Consensus 795 e 795 (930)
+
T Consensus 287 ~ 287 (291)
T 3szp_A 287 G 287 (291)
T ss_dssp H
T ss_pred H
Confidence 3
No 233
>2rin_A Putative glycine betaine-binding ABC transporter protein; type II binding protein, aromatic BOX, acetylcholine, protein binding; HET: ACH; 1.80A {Rhizobium meliloti} PDB: 2rej_A 2rf1_A 2reg_A* 3hcq_A
Probab=72.58 E-value=5.6 Score=41.07 Aligned_cols=39 Identities=18% Similarity=0.182 Sum_probs=27.1
Q ss_pred HHHHHHHHhCCCcccEEEEecCCCCCCCCHHHHHHHHHcCcccEEEee
Q 002364 496 DVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGD 543 (930)
Q Consensus 496 dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~D~~~~~ 543 (930)
.++..+.+.+|+++++ .+ ++-..+...|.+|++|+.+..
T Consensus 24 ~i~~~~Le~~G~~Ve~--~~-------~~~~~~~~Al~~G~iD~~~~~ 62 (298)
T 2rin_A 24 ATATTILEALGYETDV--KV-------LSVPVTYTSLKNKDIDVFLGN 62 (298)
T ss_dssp HHHHHHHHHHTCEEEE--EC-------CCHHHHHHHHHHTSCCEEEEE
T ss_pred HHHHHHHHHcCCceEE--EE-------CCcHHHHHHHHcCCcEEEhhh
Confidence 4555556667977544 43 335677889999999998753
No 234
>1r9l_A Glycine betaine-binding periplasmic protein; periplasmic binding protein, cation-PI interactions, tryptophan BOX, protein binding; 1.59A {Escherichia coli} SCOP: c.94.1.1 PDB: 1r9q_A*
Probab=71.65 E-value=9.2 Score=39.66 Aligned_cols=40 Identities=18% Similarity=0.090 Sum_probs=28.7
Q ss_pred HHHHHHHHHhCCCcccEEEEecCCCCCCCCHHHHHHHHHcCcccEEEe
Q 002364 495 IDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVG 542 (930)
Q Consensus 495 ~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~D~~~~ 542 (930)
..+++.+.+.+|+++++... .+..-+...|.+|++|+...
T Consensus 24 ~~i~~~~Le~~Gy~Ve~~~~--------~~~~~~~~Al~~G~iDi~~e 63 (309)
T 1r9l_A 24 TLLVSRALEKLGYTVNKPSE--------VDYNVGYTSLASGDATFTAV 63 (309)
T ss_dssp HHHHHHHHHHTTCEECCCEE--------CCHHHHHHHHHHTSSCEEEE
T ss_pred HHHHHHHHHHcCCCeEEeec--------CchHHHHHHHhcCCceEEec
Confidence 35666677788987665321 34677888999999999864
No 235
>2czl_A Hypothetical protein TTHA1568; conserved hypothetical protein, extremely thermoph bacteria, structural genomics, NPPSFA; HET: CME TLA XPE; 1.55A {Thermus thermophilus} SCOP: c.94.1.1 PDB: 2dbp_A* 3a3u_A*
Probab=71.35 E-value=5 Score=40.67 Aligned_cols=59 Identities=12% Similarity=0.080 Sum_probs=38.7
Q ss_pred hHHhhhCCCCeEEEeCchHHHHHHHhhccccccceecCCHHHHHHHHhcCCCCCceEEEEec-chhHH
Q 002364 685 IESLRKSDDPIGYQEGSFAEYYLSQELNISKSRLVALRTPEDYAKALKDGPGKGGVAAVVDE-RPYVE 751 (930)
Q Consensus 685 ~~dL~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~i~~-~~~~~ 751 (930)
++||. |++|++...+....++.+.+- ...+++.. ...+...++.+ |++||.+.- .+.+.
T Consensus 91 ~~dLk--Gk~Ia~~~~~~~~~~ll~~ll-~~~~~~~~-~~~~~~~al~~----G~vDa~~~~~ep~~~ 150 (272)
T 2czl_A 91 LQALE--GLRVAVPGRHTTAYFLLSLYA-QGFVPVEV-RYDRILPMVAQ----GEVEAGLIIHESRFT 150 (272)
T ss_dssp CSCCT--TCEEEESCTTSHHHHHHHHHC-SSCEEEEC-CGGGHHHHHHT----TSSSEEEECTTHHHH
T ss_pred hHHhC--CCEEEeCCCCchHHHHHHHHh-ccCceeec-ChHHHHHHHHC----CCCCEEEEecchhhh
Confidence 67887 899999876655555433331 11233333 45588899998 899998874 56665
No 236
>2zsk_A PH1733, 226AA long hypothetical aspartate racemase; alpha/beta fold, unknown function; 2.55A {Pyrococcus horikoshii}
Probab=70.10 E-value=19 Score=35.24 Aligned_cols=78 Identities=18% Similarity=0.155 Sum_probs=46.4
Q ss_pred HHHHhcCcEEEEcCCChhHHHHHHHhhccCCCcEEecccCCCCCCCCCCCceEeecCCchHHHHHHHHHHHhcCccEEEE
Q 002364 90 LRFMETDIVAIIGPQCSTVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSV 169 (930)
Q Consensus 90 ~~li~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~a~~~~l~~~~~p~~~r~~p~~~~~~~ai~~~l~~~~w~~v~i 169 (930)
..|.+.++.+|+-+-++.... +..+-+..++|++.. ..+.++.+...+-++|++
T Consensus 67 ~~L~~~g~d~iviaCnTa~~~-~~~l~~~~~iPvi~i-------------------------~~a~~~~~~~~~~~rigv 120 (226)
T 2zsk_A 67 KALERAGAELIAFAANTPHLV-FDDVQREVNVPMVSI-------------------------IDAVAEEILKRGVRKVLL 120 (226)
T ss_dssp HHHHHHTCSEEEESSSGGGGG-HHHHHHHCSSCBCCH-------------------------HHHHHHHHHHTTCCEEEE
T ss_pred HHHHHcCCCEEEECCCcHHHH-HHHHHHhCCCCEecc-------------------------HHHHHHHHHHcCCCeEEE
Confidence 334444899888766666533 445555668888752 234444444456789999
Q ss_pred EEEcCccccchHHHHHHHHhhcceEEE
Q 002364 170 IFVDNEYGRNGVSALNDKLAERRCRIS 196 (930)
Q Consensus 170 i~~d~~~g~~~~~~l~~~l~~~g~~v~ 196 (930)
+.+.... .. ..+++.+++.|+++.
T Consensus 121 laT~~T~--~~-~~y~~~l~~~g~~v~ 144 (226)
T 2zsk_A 121 LGTKTTM--TA-DFYIKTLEEKGLEVV 144 (226)
T ss_dssp ESSTTTT--SC-HHHHHHHHTTTCEEE
T ss_pred EeCHHHH--hh-hHHHHHHHHCCCEEE
Confidence 8643322 11 245677777787754
No 237
>3cfx_A UPF0100 protein MA_0280; ABC transporter, binding protein, molybdate, tungstate, LIGA unknown function, transport protein; 1.60A {Methanosarcina acetivorans}
Probab=70.05 E-value=97 Score=31.35 Aligned_cols=70 Identities=14% Similarity=0.061 Sum_probs=43.5
Q ss_pred HHHHHHHHHh-CCCcccEEEEecCCCCCCCCHHHHHHHHHc-Cc-ccEEEeeeee--e-cCceeeeeecccccccceEEE
Q 002364 495 IDVFTAAVNL-LPYAVPYQFVAFGDGHKNPSYTQLVDSITT-GV-FDAVVGDITI--V-TNRTKIVDFSQPYAASGLVVV 568 (930)
Q Consensus 495 ~dl~~~l~~~-l~f~~~~~~~~~~~~~~~~~~~~~~~~l~~-g~-~D~~~~~~~~--t-~~r~~~vdft~p~~~~~~~~l 568 (930)
-++++.+.++ -|.++++ .. ++-..++.++.+ |. +|+.+..-.. . ......++...||....++++
T Consensus 20 ~~l~~~F~~~~~gi~V~~--~~-------~~s~~l~~~i~~~g~~~Dv~~~a~~~~~~~l~~~gl~~~~~~~~~~~l~i~ 90 (296)
T 3cfx_A 20 EELEAEFEAQHPGVDVQR--EA-------AGSAQSVRKITELGKKADVLASADYALIPSLMVPEYADWYAAFARNQMILA 90 (296)
T ss_dssp HHHHHHHHHHSTTCEEEE--EE-------CCHHHHHHHHHTSCCCCSEEEESSTTHHHHHTTTTTCSCEEEEEECCEEEE
T ss_pred HHHHHHHHHHCCCceEEE--Ee-------CchHHHHHHHHhCCCCCcEEEECChhhHHHHHhCCCccceeeeEeeeEEEE
Confidence 3677888777 4855444 43 446778888888 75 9988753211 1 011222345567778888888
Q ss_pred EeccC
Q 002364 569 VPFRK 573 (930)
Q Consensus 569 v~~~~ 573 (930)
+++..
T Consensus 91 ~~~~~ 95 (296)
T 3cfx_A 91 YTNES 95 (296)
T ss_dssp ECTTS
T ss_pred EeCCC
Confidence 87654
No 238
>1jfl_A Aspartate racemase; alpha-beta structure, HOMO-dimer, homologous domains, isomer; 1.90A {Pyrococcus horikoshii} SCOP: c.78.2.1 c.78.2.1 PDB: 2dx7_A* 1iu9_A
Probab=70.03 E-value=12 Score=36.63 Aligned_cols=80 Identities=16% Similarity=0.250 Sum_probs=47.0
Q ss_pred HHHHHHHhcCcEEEEcCCChhHHHHHHHhhccCCCcEEecccCCCCCCCCCCCceEeecCCchHHHHHHHHHHHhcCccE
Q 002364 87 VEALRFMETDIVAIIGPQCSTVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNA 166 (930)
Q Consensus 87 ~~a~~li~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~a~~~~l~~~~~p~~~r~~p~~~~~~~ai~~~l~~~~w~~ 166 (930)
+.+..|.+.++.+|+-+-++.. ..+..+-+..++|++.. ..+.++.+...+-++
T Consensus 65 ~~~~~l~~~g~d~iviaCnTa~-~~~~~l~~~~~iPvi~i-------------------------~~~~~~~a~~~~~~r 118 (228)
T 1jfl_A 65 WTAKRLEECGADFIIMPCNTAH-AFVEDIRKAIKIPIISM-------------------------IEETAKKVKELGFKK 118 (228)
T ss_dssp HHHHHHHHHTCSEEECSCTGGG-GGHHHHHHHCSSCBCCH-------------------------HHHHHHHHHHTTCSE
T ss_pred HHHHHHHHcCCCEEEEcCccHH-HHHHHHHHhCCCCEech-------------------------HHHHHHHHHHcCCCe
Confidence 4455555559999988777665 55556666778988852 123333333336678
Q ss_pred EEEEEEcCccccchHHHHHHHHhhcceEE
Q 002364 167 VSVIFVDNEYGRNGVSALNDKLAERRCRI 195 (930)
Q Consensus 167 v~ii~~d~~~g~~~~~~l~~~l~~~g~~v 195 (930)
|+++.+....- ...+++.+++.|.++
T Consensus 119 igvlaT~~T~~---~~~y~~~l~~~g~~v 144 (228)
T 1jfl_A 119 AGLLATTGTIV---SGVYEKEFSKYGVEI 144 (228)
T ss_dssp EEEECCHHHHH---HTHHHHHHHHTTCEE
T ss_pred EEEEecHHHhh---hhHHHHHHHHCCCeE
Confidence 88886443211 124455666667664
No 239
>3cfz_A UPF0100 protein MJ1186; ABC transporter, binding protein, molybdate, tungstate, ligand, unknown function, transport protein; 1.70A {Methanocaldococcus jannaschii}
Probab=69.39 E-value=69 Score=32.41 Aligned_cols=71 Identities=13% Similarity=0.005 Sum_probs=43.6
Q ss_pred eHHHHHHHHHh-CCCcccEEEEecCCCCCCCCHHHHHHHHHc-Cc-ccEEEeeeeeec---CceeeeeecccccccceEE
Q 002364 494 CIDVFTAAVNL-LPYAVPYQFVAFGDGHKNPSYTQLVDSITT-GV-FDAVVGDITIVT---NRTKIVDFSQPYAASGLVV 567 (930)
Q Consensus 494 ~~dl~~~l~~~-l~f~~~~~~~~~~~~~~~~~~~~~~~~l~~-g~-~D~~~~~~~~t~---~r~~~vdft~p~~~~~~~~ 567 (930)
.-++++.+.++ -|.+++ +.. ++-..++.++.+ |. +|+.+..-.... .....++...||....+++
T Consensus 19 ~~~l~~~F~~~~~gi~V~--~~~-------~~s~~l~~~i~~~g~~~Dv~~~a~~~~~~~l~~~gl~~~~~~~~~~~lvi 89 (292)
T 3cfz_A 19 FEEYEKMFEKEHPNVDVE--REP-------AGSVACVRKIIDLGKKADILASADYSLIPQMMMPKYADWYVMFARNEIVL 89 (292)
T ss_dssp HHHHHHHHHHHCTTEEEE--EEE-------ECHHHHHHHHHTSCCCCSEEEESSTTHHHHHTTTTTCSCCEEEEECCEEE
T ss_pred HHHHHHHHHHHCCCceEE--EEe-------CCHHHHHHHHHhcCCCCcEEEECChHHHHHHHhCCCccceeeeEeccEEE
Confidence 34677777777 475544 433 346778889988 75 999875321101 1112234556778888888
Q ss_pred EEeccC
Q 002364 568 VVPFRK 573 (930)
Q Consensus 568 lv~~~~ 573 (930)
++++..
T Consensus 90 ~~~~~~ 95 (292)
T 3cfz_A 90 AYTDKS 95 (292)
T ss_dssp EECTTS
T ss_pred EEcCCC
Confidence 887654
No 240
>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP: e.22.1.2
Probab=69.29 E-value=14 Score=39.92 Aligned_cols=88 Identities=10% Similarity=0.060 Sum_probs=62.7
Q ss_pred HHHHHHHhcCccEEEEEEEcCcccc-chHHHHHHHHhhcceEEEEEEecCCCCCCChhHHHHHHHHHHhCCceEEEEEcC
Q 002364 154 AVAEMVSYYGWNAVSVIFVDNEYGR-NGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVS 232 (930)
Q Consensus 154 ai~~~l~~~~w~~v~ii~~d~~~g~-~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~ 232 (930)
.+.++++.+|.+++.+|+.+..... +..+.+.+.+++.|+++..-..+.++ .+.+.+...++.+++.++|+||-.+.
T Consensus 33 ~l~~~l~~~g~~r~liVtd~~~~~~~g~~~~v~~~L~~~g~~~~~f~~v~~~--p~~~~v~~~~~~~~~~~~D~IIavGG 110 (407)
T 1vlj_A 33 KIGEEIKNAGIRKVLFLYGGGSIKKNGVYDQVVDSLKKHGIEWVEVSGVKPN--PVLSKVHEAVEVAKKEKVEAVLGVGG 110 (407)
T ss_dssp GHHHHHHHTTCCEEEEEECSSHHHHSSHHHHHHHHHHHTTCEEEEECCCCSS--CBHHHHHHHHHHHHHTTCSEEEEEES
T ss_pred HHHHHHHHcCCCeEEEEECchHHhhccHHHHHHHHHHHcCCeEEEecCccCC--CCHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 3556677788899999985444434 36788999999889876533333334 45778888889999999999997755
Q ss_pred h--hhHHHHHHHH
Q 002364 233 P--SLGFQVFSVA 243 (930)
Q Consensus 233 ~--~~~~~~~~~a 243 (930)
+ -+++.++...
T Consensus 111 GsviD~AK~iA~~ 123 (407)
T 1vlj_A 111 GSVVDSAKAVAAG 123 (407)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHH
Confidence 4 4666666554
No 241
>1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase, PSI, protein structure initiative; HET: APR; 1.60A {Escherichia coli} SCOP: e.22.1.2 PDB: 2bi4_A* 2bl4_A*
Probab=68.50 E-value=8.3 Score=41.51 Aligned_cols=101 Identities=10% Similarity=0.029 Sum_probs=68.8
Q ss_pred CceEeecCCchHHHHHHHHHHHhcCccEEEEEEEcCccccchHHHHHHHHhhcceEEEEEEecCCCCCCChhHHHHHHHH
Q 002364 139 PFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVK 218 (930)
Q Consensus 139 p~~~r~~p~~~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~ 218 (930)
|+-+...+... ..+.++++.++.+++.+|++......+..+.+.+.+++.|+++..-..+.++ .+.+.+...++.
T Consensus 9 p~~i~~G~g~~---~~l~~~l~~~g~~~~livtd~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~--p~~~~v~~~~~~ 83 (386)
T 1rrm_A 9 NETAWFGRGAV---GALTDEVKRRGYQKALIVTDKTLVQCGVVAKVTDKMDAAGLAWAIYDGVVPN--PTITVVKEGLGV 83 (386)
T ss_dssp CSEEEESTTGG---GGHHHHHHHHTCCEEEEECBHHHHHTTHHHHHHHHHHHTTCEEEEECBCCSS--CBHHHHHHHHHH
T ss_pred CceEEECcCHH---HHHHHHHHHcCCCEEEEEECcchhhchHHHHHHHHHHHcCCeEEEECCccCC--CCHHHHHHHHHH
Confidence 44444444433 3355667777888998887544333346888999999999887544445555 457888888899
Q ss_pred HHhCCceEEEEEcCh--hhHHHHHHHHH
Q 002364 219 VALMESRVIVLHVSP--SLGFQVFSVAK 244 (930)
Q Consensus 219 l~~~~~~viil~~~~--~~~~~~~~~a~ 244 (930)
+++.++|+||-.+.+ -+++.++....
T Consensus 84 ~~~~~~d~IIavGGGsv~D~aK~iA~~~ 111 (386)
T 1rrm_A 84 FQNSGADYLIAIGGGSPQDTCKAIGIIS 111 (386)
T ss_dssp HHHHTCSEEEEEESHHHHHHHHHHHHHH
T ss_pred HHhcCcCEEEEeCChHHHHHHHHHHHHH
Confidence 988899999976554 46666665544
No 242
>3hn0_A Nitrate transport protein; ABC transporter, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; 1.75A {Parabacteroides distasonis}
Probab=67.62 E-value=9.8 Score=38.84 Aligned_cols=61 Identities=13% Similarity=0.182 Sum_probs=40.6
Q ss_pred CCCeEEE-eCchHHHHHH---HhhccccccceecC-CHHHHHHHHhcCCCCCceEEEEecchhHHHHHhcC
Q 002364 692 DDPIGYQ-EGSFAEYYLS---QELNISKSRLVALR-TPEDYAKALKDGPGKGGVAAVVDERPYVELFLSSQ 757 (930)
Q Consensus 692 ~~~v~~~-~~s~~~~~l~---~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~g~~~a~i~~~~~~~~~~~~~ 757 (930)
|++|++. .++..+.+++ ++.++ ..+++... +..+...++.+ |++||.+...++......+.
T Consensus 96 GK~Iav~~~gs~~~~ll~~~L~~~Gl-dv~~~~~~~~~~~~~~al~~----G~vDa~~~~eP~~~~a~~~~ 161 (283)
T 3hn0_A 96 EPALYVFGNGTTPDILTRYYLGRQRL-DYPLNYAFNTAGEITQGILA----GKVNRAVLGEPFLSIALRKD 161 (283)
T ss_dssp SCCEECSSTTSHHHHHHHHHHHHHTC-CCCEECSCCSHHHHHHHHHH----TSCSEEEECTTHHHHHHHHC
T ss_pred CCEEEecCCCCcHHHHHHHHHHHcCC-ceEEEEccCCHHHHHHHHHc----CCCCEEEecccHHHHHHhhC
Confidence 8999975 5664444332 23344 23444444 68999999999 89999888778777655443
No 243
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=66.98 E-value=87 Score=29.61 Aligned_cols=159 Identities=14% Similarity=0.133 Sum_probs=98.2
Q ss_pred eEEEEEEeeCCCcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCChhHHH
Q 002364 31 VVNVGALFTLDSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCSTVAH 110 (930)
Q Consensus 31 ~i~IG~i~~~s~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~s~~~~ 110 (930)
..+|.++.|... ...-++-...+.+ ..+.+.. ++-..++..+.++ ++++.+||.-. .++.
T Consensus 4 ~~~I~~iapy~~-----l~~~~~~i~~e~~--------~~i~i~~----~~l~~~v~~a~~~-~~~~dVIISRG--gta~ 63 (196)
T 2q5c_A 4 SLKIALISQNEN-----LLNLFPKLALEKN--------FIPITKT----ASLTRASKIAFGL-QDEVDAIISRG--ATSD 63 (196)
T ss_dssp CCEEEEEESCHH-----HHHHHHHHHHHHT--------CEEEEEE----CCHHHHHHHHHHH-TTTCSEEEEEH--HHHH
T ss_pred CCcEEEEEccHH-----HHHHHHHHHhhhC--------CceEEEE----CCHHHHHHHHHHh-cCCCeEEEECC--hHHH
Confidence 357888888642 3333443444432 2444333 3456788889998 88999998532 3333
Q ss_pred HHHHhhccCCCcEEecccCCCCCCCCCCCceEeecCCchHHHHHHHHHHHhcCccEEEEEEEcCccccchHHHHHHHHhh
Q 002364 111 IVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAE 190 (930)
Q Consensus 111 ~v~~~~~~~~iP~is~~a~~~~l~~~~~p~~~r~~p~~~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~ 190 (930)
.+. +..++|+|.. ..+..+..+++...-++ + ++++++.-.+. ....+.+.+.+.
T Consensus 64 ~lr---~~~~iPVV~I------------------~~s~~Dil~al~~a~~~-~-~kIavvg~~~~--~~~~~~~~~ll~- 117 (196)
T 2q5c_A 64 YIK---KSVSIPSISI------------------KVTRFDTMRAVYNAKRF-G-NELALIAYKHS--IVDKHEIEAMLG- 117 (196)
T ss_dssp HHH---TTCSSCEEEE------------------CCCHHHHHHHHHHHGGG-C-SEEEEEEESSC--SSCHHHHHHHHT-
T ss_pred HHH---HhCCCCEEEE------------------cCCHhHHHHHHHHHHhh-C-CcEEEEeCcch--hhHHHHHHHHhC-
Confidence 333 3457999863 13445666777766554 3 48999875443 223556666653
Q ss_pred cceEEEEEEecCCCCCCChhHHHHHHHHHHhCCceEEEEEcChhhHHHHHHHHHHcCcc
Q 002364 191 RRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMM 249 (930)
Q Consensus 191 ~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~~~~~a~~~g~~ 249 (930)
.++.... + .+.++....++++++.+.++||-.. ...+.|+++|+.
T Consensus 118 --~~i~~~~-~-----~~~~e~~~~i~~l~~~G~~vvVG~~------~~~~~A~~~Gl~ 162 (196)
T 2q5c_A 118 --VKIKEFL-F-----SSEDEITTLISKVKTENIKIVVSGK------TVTDEAIKQGLY 162 (196)
T ss_dssp --CEEEEEE-E-----CSGGGHHHHHHHHHHTTCCEEEECH------HHHHHHHHTTCE
T ss_pred --CceEEEE-e-----CCHHHHHHHHHHHHHCCCeEEECCH------HHHHHHHHcCCc
Confidence 4544322 2 1367889999999999999987643 346678888874
No 244
>3mz1_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative, MI center for STR uctural genomics, MCSG; 1.88A {Sinorhizobium meliloti}
Probab=65.34 E-value=21 Score=36.04 Aligned_cols=80 Identities=8% Similarity=0.044 Sum_probs=47.9
Q ss_pred CceeEEEecCCccccceeeeccCCcceEeeeHHHHHHHHHhCCCcccEEEEecCCCCCCCCHHHHHHHHHcCcccEEEee
Q 002364 464 GKLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGD 543 (930)
Q Consensus 464 g~~lrv~~~~~~~~~p~~~~~~~~~~~~G~~~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~D~~~~~ 543 (930)
.++||||+.. .+ ...+-..++..+.++.+ .+++.+... .. ...+.+|++|+++..
T Consensus 87 ~~~l~I~~~~--~~------------~~~~l~~~l~~f~~~~P-~v~i~~~~~------~~----~~~l~~~~~Dl~i~~ 141 (300)
T 3mz1_A 87 KGRLRVETAS--AF------------ANLVIIPALPEFHKKYP-DIQIDLGVS------DR----TIDYLAENVDCAIRA 141 (300)
T ss_dssp CEEEEEEECH--HH------------HHHTHHHHHHHHHHHCT-TEEEEEEEC------CC----C--CCCTTCCEEEEE
T ss_pred CceEEEEecH--HH------------HHHHHHHHHHHHHHHCC-CcEEEEEeC------CC----cccccccCCcEEEEe
Confidence 4579998884 11 12455678888888775 355555431 11 125788999999864
Q ss_pred eeeecCceeeeeecccccccceEEEEecc
Q 002364 544 ITIVTNRTKIVDFSQPYAASGLVVVVPFR 572 (930)
Q Consensus 544 ~~~t~~r~~~vdft~p~~~~~~~~lv~~~ 572 (930)
..... ..+. +.++....+++++++.
T Consensus 142 ~~~~~---~~l~-~~~l~~~~~~~v~~~~ 166 (300)
T 3mz1_A 142 GTLTD---QSLI-ARRITEMKFVACASRD 166 (300)
T ss_dssp SSCSC---TTSE-EEEEEEECEEEEEEHH
T ss_pred ccCCC---CCeE-EEEeecceeEEEECHH
Confidence 33222 2222 3567778888888765
No 245
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A*
Probab=65.01 E-value=19 Score=38.28 Aligned_cols=88 Identities=11% Similarity=0.034 Sum_probs=63.2
Q ss_pred HHHHHHHHhcCccEEEEEEEcCccccc-hHHHHHHHHhhcceEEEEEEecCCCCCCChhHHHHHHHHHHhCCceEEEEEc
Q 002364 153 TAVAEMVSYYGWNAVSVIFVDNEYGRN-GVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHV 231 (930)
Q Consensus 153 ~ai~~~l~~~~w~~v~ii~~d~~~g~~-~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~ 231 (930)
..+.++++.++ +++.+|++...+... ..+.+.+.+++.|+++..-..+.++ .+.+.+...++.+++.++|+||-.+
T Consensus 30 ~~l~~~l~~~g-~~~liVtd~~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~--p~~~~v~~~~~~~~~~~~d~IIavG 106 (371)
T 1o2d_A 30 EKRGNIIDLLG-KRALVVTGKSSSKKNGSLDDLKKLLDETEISYEIFDEVEEN--PSFDNVMKAVERYRNDSFDFVVGLG 106 (371)
T ss_dssp HHHGGGGGGTC-SEEEEEEESSGGGTSSHHHHHHHHHHHTTCEEEEEEEECSS--CBHHHHHHHHHHHTTSCCSEEEEEE
T ss_pred HHHHHHHHHcC-CEEEEEECchHHhhccHHHHHHHHHHHcCCeEEEeCCccCC--CCHHHHHHHHHHHHhcCCCEEEEeC
Confidence 34556677778 899999866554433 5788999999889876543444554 4578888989999888999999775
Q ss_pred Ch--hhHHHHHHHH
Q 002364 232 SP--SLGFQVFSVA 243 (930)
Q Consensus 232 ~~--~~~~~~~~~a 243 (930)
.+ -+++.++...
T Consensus 107 GGsv~D~AK~iA~~ 120 (371)
T 1o2d_A 107 GGSPMDFAKAVAVL 120 (371)
T ss_dssp SHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHH
Confidence 54 4666666554
No 246
>3uhj_A Probable glycerol dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.34A {Sinorhizobium meliloti}
Probab=64.85 E-value=10 Score=40.70 Aligned_cols=82 Identities=10% Similarity=0.039 Sum_probs=54.0
Q ss_pred HHHHHHHhcCccEEEEEEEcCccccchHHHHHHHHhhcceEEEEEEecCCCCCCChhHHHHHHHHHHhCCceEEEEEcCh
Q 002364 154 AVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSP 233 (930)
Q Consensus 154 ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~ 233 (930)
.+.++++.+| +++.+|++...+. ...+.+.+.+++ |+.+.+. .+.++ .+.+++...++.+++.++|+||-.+.+
T Consensus 43 ~l~~~l~~~g-~r~liVtd~~~~~-~~~~~v~~~L~~-g~~~~~~-~~~~~--p~~~~v~~~~~~~~~~~~d~IIavGGG 116 (387)
T 3uhj_A 43 KLAAYLAPLG-KRALVLIDRVLFD-ALSERIGKSCGD-SLDIRFE-RFGGE--CCTSEIERVRKVAIEHGSDILVGVGGG 116 (387)
T ss_dssp TTHHHHGGGC-SEEEEEECTTTHH-HHHHHC-------CCEEEEE-ECCSS--CSHHHHHHHHHHHHHHTCSEEEEESSH
T ss_pred HHHHHHHHcC-CEEEEEECchHHH-HHHHHHHHHHHc-CCCeEEE-EcCCC--CCHHHHHHHHHHHhhcCCCEEEEeCCc
Confidence 3566778888 9999888655543 367888889998 9887443 45555 457888888888888899999887765
Q ss_pred h--hHHHHHH
Q 002364 234 S--LGFQVFS 241 (930)
Q Consensus 234 ~--~~~~~~~ 241 (930)
. +++.++.
T Consensus 117 s~~D~AK~iA 126 (387)
T 3uhj_A 117 KTADTAKIVA 126 (387)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3 4555544
No 247
>3fd3_A Chromosome replication initiation inhibitor prote; structural genomics, LYSR, PSI-2, structure initiative; HET: MSE P33 PG4; 1.70A {Agrobacterium tumefaciens str}
Probab=63.72 E-value=33 Score=32.11 Aligned_cols=68 Identities=9% Similarity=-0.034 Sum_probs=42.2
Q ss_pred eeeHHHHHHHHHhCCCcccEEEEecCCCCCCCCHHHHHHHHHcCcccEEEeeeeeecCceeeeeecccccccceEEEEec
Q 002364 492 GFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGDITIVTNRTKIVDFSQPYAASGLVVVVPF 571 (930)
Q Consensus 492 G~~~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~t~~r~~~vdft~p~~~~~~~~lv~~ 571 (930)
.+-.+++..+.++.+ +++.+.. ++..++.+.+.+|..|+++..-... ...+ -+.++....++++++.
T Consensus 15 ~~l~~~l~~f~~~~~--v~l~l~~-------~~~~~~~~~l~~g~d~~~i~~~~~~---~~~l-~~~~l~~~~~~~v~~~ 81 (208)
T 3fd3_A 15 TWFLDAVSKFTGGSD--YLVNIAV-------DDQDHTVEWLRGGRVLAAVTAHDKP---VQGC-RVTPLGVLRYHATASP 81 (208)
T ss_dssp TTHHHHHHHHHHTSS--CEEEEEE-------CCSSCHHHHHHTTSCSEEEESCCSC---CTTC-EEEEEEEEEEEEEECH
T ss_pred HHHHHHHHHHHhhcC--eEEEEEe-------CCcHhHHHHHhcCcceEEEecCCCC---CCCc-eEEEccceEEEEEECh
Confidence 456788899988885 5566665 4456788999999555544321111 1122 2356777777777764
Q ss_pred c
Q 002364 572 R 572 (930)
Q Consensus 572 ~ 572 (930)
.
T Consensus 82 ~ 82 (208)
T 3fd3_A 82 D 82 (208)
T ss_dssp H
T ss_pred H
Confidence 3
No 248
>3cvg_A Putative metal binding protein; PSI-II, NYSGXRC, periplasmic, structural GENO protein structure initiative; 1.97A {Coccidioides immitis}
Probab=63.61 E-value=74 Score=32.31 Aligned_cols=73 Identities=10% Similarity=0.137 Sum_probs=48.3
Q ss_pred eeeHHHHHHHHHh---C---CCcccEEEEecCCCCCCCCHHHHHHHHHcCcccEEEeeeeeecCce--eeeee-cc-ccc
Q 002364 492 GFCIDVFTAAVNL---L---PYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGDITIVTNRT--KIVDF-SQ-PYA 561 (930)
Q Consensus 492 G~~~dl~~~l~~~---l---~f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~t~~r~--~~vdf-t~-p~~ 561 (930)
.+-.+++..+.++ . + +++.+.. ++...++.+|.+|++|+++..-....+.. ..+.+ .. |+.
T Consensus 33 ~~lp~ll~~F~~~~~~~~~P~--v~v~l~~-------~~s~~l~~~l~~G~~Dl~i~~~~~~~~~l~~~~~~~~~~~~l~ 103 (294)
T 3cvg_A 33 GLVKELADAFIKSKVDSGSAP--FKVAWYK-------SDTTVTINYLKDGIVDVGITYSPVAERISIKHGISESPSYYAF 103 (294)
T ss_dssp THHHHHHHHHHHHHHSCC-----CEEEEEE-------CCHHHHHHHHHTTSCSEEEESCHHHHHHHHHTTSBCSSCEEEE
T ss_pred HHHHHHHHHHHhhhcccCCCC--eEEEEEe-------CCHHHHHHHHHcCCCcEEEEcCchhhhHHHhCCcccceeeeEE
Confidence 4566788889888 7 5 4566654 56889999999999999875321111100 01112 24 788
Q ss_pred ccceEEEEeccC
Q 002364 562 ASGLVVVVPFRK 573 (930)
Q Consensus 562 ~~~~~~lv~~~~ 573 (930)
...+++++|+..
T Consensus 104 ~d~lvlv~~~~h 115 (294)
T 3cvg_A 104 RDHFMLIGPPSN 115 (294)
T ss_dssp EEEEEEEECTTC
T ss_pred eccEEEEecCCC
Confidence 889999988765
No 249
>3l6g_A Betaine ABC transporter permease and substrate BI protein; glycine betaine binding, substrate binding domain, venus FLY cell membrane; HET: B3P; 1.90A {Lactococcus lactis} PDB: 3l6h_A
Probab=63.39 E-value=16 Score=36.67 Aligned_cols=42 Identities=21% Similarity=0.241 Sum_probs=31.0
Q ss_pred eeHHHHHHHHHhCCCcccEEEEecCCCCCCCCHHHHHHHHHcCcccEEEee
Q 002364 493 FCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGD 543 (930)
Q Consensus 493 ~~~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~D~~~~~ 543 (930)
+-..|++.+.+.+|+++++ .+ ++-.-+...|.+|++|+....
T Consensus 16 i~~~i~~~~Le~~G~~Ve~--~~-------~~~~~~~~al~~G~iD~~~e~ 57 (256)
T 3l6g_A 16 ASINVLTQAMKEHGFDVKT--TA-------LDNAVAWQTVANGQADGMVSA 57 (256)
T ss_dssp HHHHHHHHHHHHTTEEEEE--EE-------CCHHHHHHHHHTTSSSEEEEE
T ss_pred HHHHHHHHHHHHCCCceEE--EE-------CChHHHHHHHHCCCCeEEEcc
Confidence 4457788888888976554 44 335678899999999998754
No 250
>2qsx_A Putative transcriptional regulator, LYSR family; the putative transcriptional regulator, PSI-2, structure initiative, MCSG; 1.64A {Vibrio parahaemolyticus}
Probab=63.26 E-value=60 Score=30.88 Aligned_cols=70 Identities=10% Similarity=-0.060 Sum_probs=40.8
Q ss_pred eecCCHHHHHHHHhcCCCCCceEEEEecchhHHHHHhcCccEEEeC-c-cccccceeeeeCCCCcchHHHHHHHHhhh
Q 002364 719 VALRTPEDYAKALKDGPGKGGVAAVVDERPYVELFLSSQCSFRIVG-Q-EFTKSGWGFAFPRDSPLAVDLSSAILELA 794 (930)
Q Consensus 719 ~~~~~~~~~~~~l~~~~~~g~~~a~i~~~~~~~~~~~~~~~l~~~~-~-~~~~~~~~~~~~k~spl~~~i~~~i~~l~ 794 (930)
..+++.+...+++.. |-..+++........ +.. ..+..+. + ......+.++.+++......+...+..+.
T Consensus 140 ~~~~~~~~~~~~v~~----G~Gia~lp~~~~~~~-l~~-g~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~l~ 211 (218)
T 2qsx_A 140 VGFEHFYLACEAVRM----EKGLALLPDFMAQFS-ILR-GDIQHIGNLKLHSGYGYYVVIPNFRLTSRKVALFHDWLK 211 (218)
T ss_dssp BCCSSHHHHHHHHHT----TCCBEEEEHHHHHHH-HHT-TSEEEEEEEEEEEEEEEEEECCTTCTTCHHHHHHHHHHH
T ss_pred ceeccHHHHHHHHHh----CCCEEEecHHHHHHH-HHC-CCccccCccccCCCceEEEEeccccCCCHHHHHHHHHHH
Confidence 456788889999998 555566654433232 222 2343332 2 12234677888888776666666665554
No 251
>1h3d_A ATP-phosphoribosyltransferase; hisitidine biosynthesis, glycosyltransferase; HET: AMP TLA; 2.7A {Escherichia coli} SCOP: c.94.1.1 d.58.5.3 PDB: 1q1k_A*
Probab=62.61 E-value=43 Score=34.03 Aligned_cols=102 Identities=16% Similarity=0.074 Sum_probs=61.8
Q ss_pred CCCChHHhhhCCCCeEEEeCchHHHHHHHhhccccccceecCCHHHHHHHHhcCCCCCceEEEEecchhHHHHHhcCccE
Q 002364 681 PINGIESLRKSDDPIGYQEGSFAEYYLSQELNISKSRLVALRTPEDYAKALKDGPGKGGVAAVVDERPYVELFLSSQCSF 760 (930)
Q Consensus 681 ~i~s~~dL~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~i~~~~~~~~~~~~~~~l 760 (930)
.++++++|. +++|+..-......||. +.+.+ .+++.....-|..-.+ |-.|++++-.....-+..+ +|
T Consensus 115 ~~~~~~~l~--g~RIATkyp~l~~~yf~-~~gi~-~~ii~l~GsvE~aP~~------GlADaIvDivsTG~TLraN--gL 182 (299)
T 1h3d_A 115 AWDGPLSLN--GKRIATSYPHLLKRYLD-QKGIS-FKSCLLNGSVEVAPRA------GLADAICDLVSTGATLEAN--GL 182 (299)
T ss_dssp CCCCGGGGT--TCEEEESCHHHHHHHHH-HHTCC-CEEEECSSCTTHHHHT------TSCSEEEEEESSCHHHHHT--TE
T ss_pred CCCChHHhC--CCEEEeCcHHHHHHHHH-HcCCc-EEEEECCCceeeccCC------CccceEEecccCHHHHHHC--CC
Confidence 445677775 77888877777888884 44554 3455555444444333 6678888866555444333 56
Q ss_pred EEeCccccccceeeeeCCCC--cc-hHHHHHHHHhhhh
Q 002364 761 RIVGQEFTKSGWGFAFPRDS--PL-AVDLSSAILELAE 795 (930)
Q Consensus 761 ~~~~~~~~~~~~~~~~~k~s--pl-~~~i~~~i~~l~e 795 (930)
..++.. ....-.+...|.+ +. .+.++..+.++..
T Consensus 183 ~~ie~I-~~SsA~LI~n~~s~~~~k~~~i~~l~~rl~~ 219 (299)
T 1h3d_A 183 REVEVI-YRSKACLIQRDGEMEESKQQLIDKLLTRIQG 219 (299)
T ss_dssp EEEEEE-EEECEEEEEESSCCCHHHHHHHHHHHHHHHH
T ss_pred EEeEEE-EeeEEEEEEeccccChhHHHHHHHHHHHHHH
Confidence 777444 4445566666775 23 3567777776653
No 252
>4edp_A ABC transporter, substrate-binding protein; clostridium PERF ATCC 13124, center for structural genomics of infectious DI csgid; 1.85A {Clostridium perfringens}
Probab=62.11 E-value=80 Score=32.62 Aligned_cols=81 Identities=10% Similarity=-0.054 Sum_probs=50.6
Q ss_pred cCCHHHHHHHHhcCCCCCceEEEEecchhHHHHHhcCccEEEe-Cc-cccccceeeeeCCCCcchHHHHHHHHhhhhccc
Q 002364 721 LRTPEDYAKALKDGPGKGGVAAVVDERPYVELFLSSQCSFRIV-GQ-EFTKSGWGFAFPRDSPLAVDLSSAILELAENGD 798 (930)
Q Consensus 721 ~~~~~~~~~~l~~~~~~g~~~a~i~~~~~~~~~~~~~~~l~~~-~~-~~~~~~~~~~~~k~spl~~~i~~~i~~l~e~G~ 798 (930)
..+..+..+.+.+ |++++.+........+.....++.++ +. -......+++++++++-.+.--+.|..|.+...
T Consensus 216 ~~~~~~~~~~f~~----G~~a~~~~~~~~~~~~~~~~~~~~~~~P~~g~~~~~~~~~i~~~s~~~~~A~~fi~~l~s~e~ 291 (351)
T 4edp_A 216 YSKSSDLANMFSN----GEIVAAVASDFAFGTISKAKPEVINVIPESGTYLNFNTININKNSKNKDLAYEFINYALSKEV 291 (351)
T ss_dssp ECCHHHHHHHHHT----TSCSEEEEEHHHHHHHHHHCTTCEEECCTTCCBEEEEEEEEBTTCSCHHHHHHHHHHHTSHHH
T ss_pred cCChHHHHHHHHc----CCEEEEecCcHHHHHHHhcCCCeeeeCCCCCcccceeeEEEECCCCCHHHHHHHHHHhcCHHH
Confidence 4567788889988 88888777655555544444344333 21 112234578999999977777777777765553
Q ss_pred hHHHHHH
Q 002364 799 LQRIHDK 805 (930)
Q Consensus 799 ~~~~~~~ 805 (930)
...+.+.
T Consensus 292 q~~~~~~ 298 (351)
T 4edp_A 292 QEKTAKA 298 (351)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 4444443
No 253
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=61.80 E-value=27 Score=35.80 Aligned_cols=79 Identities=14% Similarity=0.021 Sum_probs=58.7
Q ss_pred cEEEEEEE--cCccccchHHHHHHHHhhcceEEEEEEecCCCCCCChhHHHHHHHHHHhCCceEEEEEcChhh-HHHHHH
Q 002364 165 NAVSVIFV--DNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSL-GFQVFS 241 (930)
Q Consensus 165 ~~v~ii~~--d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~-~~~~~~ 241 (930)
+.|+++.. +++|.......+.+++++.|..+..... . .+.......++.+.+.+.|.||+...... ....++
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~----~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~ 77 (313)
T 3m9w_A 3 VKIGMAIDDLRLERWQKDRDIFVKKAESLGAKVFVQSA-N----GNEETQMSQIENMINRGVDVLVIIPYNGQVLSNVVK 77 (313)
T ss_dssp CEEEEEESCCSSSTTHHHHHHHHHHHHHTSCEEEEEEC-T----TCHHHHHHHHHHHHHTTCSEEEEECSSTTSCHHHHH
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEECC-C----CCHHHHHHHHHHHHHcCCCEEEEeCCChhhhHHHHH
Confidence 56888875 4778888999999999999998775432 1 23555667788888889999998765443 356788
Q ss_pred HHHHcCc
Q 002364 242 VAKYLGM 248 (930)
Q Consensus 242 ~a~~~g~ 248 (930)
++.+.|+
T Consensus 78 ~~~~~~i 84 (313)
T 3m9w_A 78 EAKQEGI 84 (313)
T ss_dssp HHHTTTC
T ss_pred HHHHCCC
Confidence 8887764
No 254
>2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A*
Probab=61.14 E-value=70 Score=32.78 Aligned_cols=144 Identities=8% Similarity=-0.057 Sum_probs=87.4
Q ss_pred ChHHHHHHHHHHHhcCcEEE--EcCCCh-hHHHHHHHhhccC-CCcEEecccCCCCCCCCCCCceEeecCCchHHHHHHH
Q 002364 81 SGFIGMVEALRFMETDIVAI--IGPQCS-TVAHIVSYVSNEL-QVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVA 156 (930)
Q Consensus 81 ~~~~a~~~a~~li~~~v~ai--iGp~~s-~~~~~v~~~~~~~-~iP~is~~a~~~~l~~~~~p~~~r~~p~~~~~~~ai~ 156 (930)
.+..+...+.++++.++.++ +-+.-+ .....+...+.+. ++.+|.|.+-. +-... ....-..|..
T Consensus 80 P~~~~~~~~~e~i~~Gi~~iv~~t~G~~~~~~~~l~~~a~~~~gi~liGPnc~G--ii~p~-~~~~~~~~~~-------- 148 (305)
T 2fp4_A 80 PPPFAAAAINEAIDAEVPLVVCITEGIPQQDMVRVKHRLLRQGKTRLIGPNCPG--VINPG-ECKIGIMPGH-------- 148 (305)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEECCCCCCHHHHHHHHHHHTTCSSCEEECSSSCE--EEETT-TEEEESSCGG--------
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCCChHHHHHHHHHHHhcCCcEEEeCCCCe--Eeccc-ccceeecccc--------
Confidence 35566777778888876663 333322 2344788889999 99999765432 21110 0111112211
Q ss_pred HHHHhcCccEEEEEEEcCccccchHHHHHHHHhhcceEEEEEEecCCCCCC-ChhHHHHHHHHHHh-CCceEEEEEcCh-
Q 002364 157 EMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGV-NTGYVMDLLVKVAL-MESRVIVLHVSP- 233 (930)
Q Consensus 157 ~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~-~~~~~~~~l~~l~~-~~~~viil~~~~- 233 (930)
.+.--+|++|.+.... ...+.+.+.+.|+-++....+-.. . ...++...|+.+.+ .++++|+++...
T Consensus 149 ----~~~~G~va~vSqSG~l----~~~~~~~~~~~g~G~S~~vs~G~~--~~~~~~~~d~l~~~~~Dp~T~~I~l~~E~~ 218 (305)
T 2fp4_A 149 ----IHKKGRIGIVSRSGTL----TYEAVHQTTQVGLGQSLCVGIGGD--PFNGTDFTDCLEIFLNDPATEGIILIGEIG 218 (305)
T ss_dssp ----GCCEEEEEEEESCSHH----HHHHHHHHHHTTCCEEEEEECCSS--SSCSCCHHHHHHHHHHCTTCCEEEEEEESS
T ss_pred ----CCCCCCEEEEecchHH----HHHHHHHHHhcCCCeeEEeccCCC--cCCCCCHHHHHHHHhcCCCCcEEEEEEecC
Confidence 2334679999877654 345556677777777665554433 2 13567777777654 678999998775
Q ss_pred ----hhHHHHHHHHHH
Q 002364 234 ----SLGFQVFSVAKY 245 (930)
Q Consensus 234 ----~~~~~~~~~a~~ 245 (930)
.++..|++++.+
T Consensus 219 g~~e~~~~~f~~~~~~ 234 (305)
T 2fp4_A 219 GNAEENAAEFLKQHNS 234 (305)
T ss_dssp SSHHHHHHHHHHHHSC
T ss_pred CchhhHHHHHHHHHHH
Confidence 468899988764
No 255
>2dwu_A Glutamate racemase; isomerase; HET: DGL; 1.60A {Bacillus anthracis}
Probab=59.79 E-value=65 Score=32.44 Aligned_cols=121 Identities=12% Similarity=0.098 Sum_probs=64.4
Q ss_pred HHHHHHHHHhcCcEEEEcCCChhHHHHHHHhhccCCCcEEecccCCCCCCCCCCCceEeecCCchHHHHHHHHHHHhcCc
Q 002364 85 GMVEALRFMETDIVAIIGPQCSTVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGW 164 (930)
Q Consensus 85 a~~~a~~li~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~a~~~~l~~~~~p~~~r~~p~~~~~~~ai~~~l~~~~w 164 (930)
..+.+..|.+.++.+|+-+-++.++.++..+-+..++|+|... -.++...++..+-
T Consensus 58 ~~~~~~~L~~~g~d~IViACNTas~~~l~~lr~~~~iPVigii------------------------ep~~~~A~~~~~~ 113 (276)
T 2dwu_A 58 VFEMVEFLKQFPLKALVVACNTAAAATLAALQEALSIPVIGVI------------------------HPGARAAIKVTKK 113 (276)
T ss_dssp HHHHHHHHTTSCEEEEEECCHHHHHHHHHHHHHHCSSCEEESH------------------------HHHHHHHHHHCSS
T ss_pred HHHHHHHHHHCCCCEEEEeCCcHHHHHHHHHHHHCCCCEEecc------------------------HHHHHHHHHhcCC
Confidence 3444445555689999986666665667777777899998520 0111112233455
Q ss_pred cEEEEEEEcCccccchHHHHHHHHhh--cceEEEEEEecCC-------CCC---CChhHHHHHHHHHHhCCceEEEEEcC
Q 002364 165 NAVSVIFVDNEYGRNGVSALNDKLAE--RRCRISYKSGIPP-------ESG---VNTGYVMDLLVKVALMESRVIVLHVS 232 (930)
Q Consensus 165 ~~v~ii~~d~~~g~~~~~~l~~~l~~--~g~~v~~~~~~~~-------~~~---~~~~~~~~~l~~l~~~~~~viil~~~ 232 (930)
++|+++.+....-.. .+++.+++ .+.++... .-+. +.. .....+...++.+.+.+.|.||+.|.
T Consensus 114 ~rIgVlaT~~T~~s~---~y~~~i~~~~~~~~v~~~-~~~~~v~~ve~g~~~~~~~~~~l~~~l~~l~~~~~D~IVLGCT 189 (276)
T 2dwu_A 114 GKIGVIGTVGTIQSN---MYEKALHELDTYLKVHSH-ACPTLATVVENRLEDTAYVTQQVKQALLPLTKEDIDTLILGCT 189 (276)
T ss_dssp SEEEEEECHHHHHTT---HHHHHHHHHCTTCEEEEE-ECTTHHHHHHHSTTCHHHHHHHHHHHHHHHHTSCCSEEEECST
T ss_pred CeEEEEeChhhhhhH---HHHHHHHHhCCCCEEEee-eCHHHHHHHHcCCcCCHHHHHHHHHHHHHHHhcCCCEEEECCC
Confidence 788888755432221 22333333 24555322 1111 000 01123555666666667888888666
Q ss_pred h
Q 002364 233 P 233 (930)
Q Consensus 233 ~ 233 (930)
.
T Consensus 190 h 190 (276)
T 2dwu_A 190 H 190 (276)
T ss_dssp T
T ss_pred C
Confidence 5
No 256
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=59.63 E-value=38 Score=36.57 Aligned_cols=93 Identities=18% Similarity=0.114 Sum_probs=61.4
Q ss_pred ccEEEEEEEcCcccc--chHHHHHHHHhhcceEEEEEEecCCCCCCChhHHHHHHHHHHhCCceEEEEEcCh------hh
Q 002364 164 WNAVSVIFVDNEYGR--NGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSP------SL 235 (930)
Q Consensus 164 w~~v~ii~~d~~~g~--~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~------~~ 235 (930)
-++|+|+| +..||. ..++.+.+.+.+.|+++......... ..+.+.++..+. +++.+++.+.. +.
T Consensus 265 ~~~v~I~Y-~S~yGnTe~mA~~ia~gl~~~Gv~~~~~~~~d~~----~~~~s~i~~~i~--~~~~ivlGspT~~~~~~p~ 337 (410)
T 4dik_A 265 KGKVTVIY-DSMYGFVENVMKKAIDSLKEKGFTPVVYKFSDEE----RPAISEILKDIP--DSEALIFGVSTYEAEIHPL 337 (410)
T ss_dssp TTEEEEEE-ECSSSHHHHHHHHHHHHHHHTTCEEEEEEECSSC----CCCHHHHHHHST--TCSEEEEEECCTTSSSCHH
T ss_pred ccceeeEE-ecccChHHHHHHHHHHHHHhcCCceEEEEeccCC----CCCHHHHHHHHH--hCCeEEEEeCCcCCcCCHH
Confidence 35899999 444554 56799999999999987654444433 556777777764 57888886653 34
Q ss_pred HHHHHHHHHHcCcccCCeEEEEeCcchh
Q 002364 236 GFQVFSVAKYLGMMGNGYVWIATDWLAY 263 (930)
Q Consensus 236 ~~~~~~~a~~~g~~~~~~~~i~~~~~~~ 263 (930)
...++.........+.....+++-+|..
T Consensus 338 ~~~~l~~l~~~~~~~K~~~~FGSyGWsg 365 (410)
T 4dik_A 338 MRFTLLEIIDKANYEKPVLVFGVHGWAP 365 (410)
T ss_dssp HHHHHHHHHHHCCCCCEEEEEEECCCCC
T ss_pred HHHHHHHHHhcccCCCEEEEEECCCCCc
Confidence 4556666666655444455666666654
No 257
>3tmg_A Glycine betaine, L-proline ABC transporter, glycine/betaine/L-proline-binding protein...; ssgcid, structural genomics; 1.90A {Borrelia burgdorferi}
Probab=58.94 E-value=43 Score=33.90 Aligned_cols=58 Identities=17% Similarity=0.281 Sum_probs=37.5
Q ss_pred CCceeEEEecCCccccceeeeccCCcceEeeeHHHHHHHHHhCCCcccEEEEecCCCCCCCCHHHHHHHHHcCcccEEEe
Q 002364 463 NGKLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVG 542 (930)
Q Consensus 463 ~g~~lrv~~~~~~~~~p~~~~~~~~~~~~G~~~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~D~~~~ 542 (930)
..++++||.. +|.. .-+-..++..+.+.+|+++++ .+ ++-.-+...|.+|++|+...
T Consensus 14 ~~~~I~Ig~~---~~te-----------~~i~~~i~~~~Le~~G~~Ve~--~~-------~~~~~~~~AL~~G~iD~~~e 70 (280)
T 3tmg_A 14 NLKSVKIGYV---NWGG-----------ETAATNVLKVVFEKMGYNAEI--FS-------VTTSIMYQYLASGKIDGTVS 70 (280)
T ss_dssp -CEEEEEEEC---CCHH-----------HHHHHHHHHHHHHHTTEEEEE--EE-------CCHHHHHHHHHTTSSSEEEE
T ss_pred CCCCEEEEcC---CCch-----------HHHHHHHHHHHHHHCCCceEE--EE-------CCcHHHHHHHHCCCCcEEEe
Confidence 3467888776 3321 112345667777779976554 44 33467789999999999875
Q ss_pred e
Q 002364 543 D 543 (930)
Q Consensus 543 ~ 543 (930)
.
T Consensus 71 ~ 71 (280)
T 3tmg_A 71 S 71 (280)
T ss_dssp E
T ss_pred c
Confidence 3
No 258
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Probab=58.42 E-value=13 Score=38.63 Aligned_cols=59 Identities=14% Similarity=0.116 Sum_probs=50.2
Q ss_pred ccchhhhHHHHHHhhhcCcC--ccc--ccchhhhHHHHHHHHHhhhhhhhhhhheeeeccccc
Q 002364 621 RQVITILWFSLSTLFFAHKE--NTV--STLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLY 679 (930)
Q Consensus 621 ~~~~~~~~~~~~~l~~~~~~--~~~--s~s~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~ 679 (930)
..+..++||++.++...|-. .|. ++.+|++..+-.+.++++.+.-++-+++-++.|+-.
T Consensus 90 ~sf~~af~fSv~T~TTvGYGd~~p~~~~~~g~~l~~~~~l~G~~l~a~~~giv~ak~srp~~r 152 (340)
T 3sya_A 90 NGFVSAFLFSIETETTIGYGYRVITDKCPEGIILLLIQSVLGSIVNAFMVGCMFVKISQPKKR 152 (340)
T ss_dssp CSTTHHHHHHHHHHSCCCCSSSCBCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGG
T ss_pred cCHHHHHhhhheeeeeecCCCccCcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhc
Confidence 46889999999999977644 564 677999999999999999999999999999887644
No 259
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=58.21 E-value=47 Score=30.74 Aligned_cols=65 Identities=12% Similarity=0.111 Sum_probs=49.1
Q ss_pred ccEEEEEEEcCccccc---hHHHHHHHHhhcceEEEEEEecCCCCCCChhHHHHHHHHHHhC-CceEEEEEcC
Q 002364 164 WNAVSVIFVDNEYGRN---GVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALM-ESRVIVLHVS 232 (930)
Q Consensus 164 w~~v~ii~~d~~~g~~---~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~-~~~viil~~~ 232 (930)
--++++|...|+-|+- ....+.+.+++.|.++.....++.+ .+.+...+++..+. ++|+||+.+.
T Consensus 10 ~~~v~Ii~tGdE~g~i~D~n~~~l~~~L~~~G~~v~~~~iv~Dd----~~~i~~~l~~a~~~~~~DlVittGG 78 (172)
T 1mkz_A 10 PTRIAILTVSNRRGEEDDTSGHYLRDSAQEAGHHVVDKAIVKEN----RYAIRAQVSAWIASDDVQVVLITGG 78 (172)
T ss_dssp CCEEEEEEECSSCCGGGCHHHHHHHHHHHHTTCEEEEEEEECSC----HHHHHHHHHHHHHSSSCCEEEEESC
T ss_pred CCEEEEEEEeCCCCcccCccHHHHHHHHHHCCCeEeEEEEeCCC----HHHHHHHHHHHHhcCCCCEEEeCCC
Confidence 3588888877766642 2467888999999998877777644 77888888887665 6899998754
No 260
>2gzm_A Glutamate racemase; enzyme, isomerase; HET: DGL; 1.99A {Bacillus anthracis}
Probab=58.16 E-value=34 Score=34.43 Aligned_cols=40 Identities=10% Similarity=0.241 Sum_probs=28.5
Q ss_pred HHHHHHHHhcCcEEEEcCCChhHHHHHHHhhccCCCcEEe
Q 002364 86 MVEALRFMETDIVAIIGPQCSTVAHIVSYVSNELQVPLLS 125 (930)
Q Consensus 86 ~~~a~~li~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is 125 (930)
.+.+..|.+.++.+|+-+-++..+..+..+-+..++|+|.
T Consensus 55 ~~~~~~L~~~g~d~iviaCNTas~~~l~~lr~~~~iPvig 94 (267)
T 2gzm_A 55 WEMTEHLLDLNIKMLVIACNTATAVVLEEMQKQLPIPVVG 94 (267)
T ss_dssp HHHHHHHHTTTCSEEEECCHHHHHHHHHHHHHHCSSCEEE
T ss_pred HHHHHHHHHCCCCEEEEeCchhhHHHHHHHHHhCCCCEEe
Confidence 3444455555899999876666655677777788999996
No 261
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=57.58 E-value=23 Score=36.16 Aligned_cols=80 Identities=10% Similarity=0.122 Sum_probs=57.5
Q ss_pred cEEEEEEE--cCccccchHHHHHHHHhhcceEEEEEEecCCCCCCChhHHHHHHHHHHhCCceEEEEEcCh-hhHHHHHH
Q 002364 165 NAVSVIFV--DNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSP-SLGFQVFS 241 (930)
Q Consensus 165 ~~v~ii~~--d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~-~~~~~~~~ 241 (930)
++++++.. +++|.......+.+++++.|..+..... .. .+.......++.+.+.+.|.||+.... ......++
T Consensus 5 ~~I~~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~--~~--~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~ 80 (305)
T 3g1w_A 5 ETYMMITFQSGMDYWKRCLKGFEDAAQALNVTVEYRGA--AQ--YDIQEQITVLEQAIAKNPAGIAISAIDPVELTDTIN 80 (305)
T ss_dssp CEEEEEESSTTSTHHHHHHHHHHHHHHHHTCEEEEEEC--SS--SCHHHHHHHHHHHHHHCCSEEEECCSSTTTTHHHHH
T ss_pred ceEEEEEccCCChHHHHHHHHHHHHHHHcCCEEEEeCC--Cc--CCHHHHHHHHHHHHHhCCCEEEEcCCCHHHHHHHHH
Confidence 67888774 4567778889999999999998875321 11 235566677788877889999987544 33456788
Q ss_pred HHHHcCc
Q 002364 242 VAKYLGM 248 (930)
Q Consensus 242 ~a~~~g~ 248 (930)
++.+.|+
T Consensus 81 ~~~~~~i 87 (305)
T 3g1w_A 81 KAVDAGI 87 (305)
T ss_dssp HHHHTTC
T ss_pred HHHHCCC
Confidence 8888775
No 262
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=56.93 E-value=14 Score=37.89 Aligned_cols=54 Identities=15% Similarity=0.215 Sum_probs=43.0
Q ss_pred cchhhhHHHHHHhhhcCcC--cccccchh------hhHHHHHHHHHhhhhhhhhhhheeeec
Q 002364 622 QVITILWFSLSTLFFAHKE--NTVSTLGR------LVLIIWLFVVLIINSSYTASLTSILTV 675 (930)
Q Consensus 622 ~~~~~~~~~~~~l~~~~~~--~~~s~s~R------~~~~~w~~~~lil~~~Yta~L~s~Lt~ 675 (930)
.+.+++|+++.++...|-. .|.+..+| ++.++|+++++.+.++-.+.+..++..
T Consensus 224 ~~~da~y~~~vTltTvGyGd~~p~t~~g~~~~~y~~~~~~~il~Gl~~~a~~~~~i~~~~~~ 285 (309)
T 3um7_A 224 SKLEAIYFVIVTLTTVGFGDYVAGADPRQDSPAYQPLVWFWILLGLAYFASVLTTIGNWLRV 285 (309)
T ss_dssp CHHHHHHHHHHHHTTCCCSSCCTTCCTTCCCSTHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHhheeccccCCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999877643 67766666 599999999999999888877776643
No 263
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=56.84 E-value=6.3 Score=40.53 Aligned_cols=53 Identities=17% Similarity=0.175 Sum_probs=46.5
Q ss_pred cchhhhHHHHHHhhhcC--cCcccccchhhhHHHHHHHHHhhhhhhhhhhheeee
Q 002364 622 QVITILWFSLSTLFFAH--KENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILT 674 (930)
Q Consensus 622 ~~~~~~~~~~~~l~~~~--~~~~~s~s~R~~~~~w~~~~lil~~~Yta~L~s~Lt 674 (930)
++.+++||++.++..-| .-.|.+..+|++.++|.++++.+.....+.+...|.
T Consensus 115 ~~~~a~yf~~~t~tTvGYGdi~P~T~~gk~~~i~~~l~Gi~~~~~~~~~i~~~l~ 169 (309)
T 3um7_A 115 DLGSAFFFSGTIITTIGYGNVALRTDAGRLFCIFYALVGIPLFGILLAGVGDRLG 169 (309)
T ss_dssp SHHHHHHHHHHHHTSCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhhhHhhheeeeecccCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999998775 448999999999999999999999999999888764
No 264
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=56.82 E-value=28 Score=36.47 Aligned_cols=80 Identities=6% Similarity=0.022 Sum_probs=57.5
Q ss_pred ccEEEEEEEc---CccccchHHHHHHHHhhcceEEEEEEecCCCCCCChhHHHHHHHHHHh--CCceEEEEEcChhhHHH
Q 002364 164 WNAVSVIFVD---NEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVAL--MESRVIVLHVSPSLGFQ 238 (930)
Q Consensus 164 w~~v~ii~~d---~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~viil~~~~~~~~~ 238 (930)
-.+|+++..+ ++|.......+.+++++.|+.+..... . .+.......++.+.+ .++|.||+.........
T Consensus 3 ~~~Ig~i~p~~~~~~f~~~~~~g~~~~a~~~g~~~~~~~~---~--~~~~~~~~~i~~~i~~~~~vDgiIi~~~~~~~~~ 77 (350)
T 3h75_A 3 LTSVVFLNPGNSTETFWVSYSQFMQAAARDLGLDLRILYA---E--RDPQNTLQQARELFQGRDKPDYLMLVNEQYVAPQ 77 (350)
T ss_dssp CCEEEEEECSCTTCHHHHHHHHHHHHHHHHHTCEEEEEEC---T--TCHHHHHHHHHHHHHSSSCCSEEEEECCSSHHHH
T ss_pred CCEEEEECCCCCCChHHHHHHHHHHHHHHHcCCeEEEEEC---C--CCHHHHHHHHHHHHhcCCCCCEEEEeCchhhHHH
Confidence 4678888854 367888899999999999998775421 1 224444556777666 58999999865556677
Q ss_pred HHHHHHHcCc
Q 002364 239 VFSVAKYLGM 248 (930)
Q Consensus 239 ~~~~a~~~g~ 248 (930)
+++.+.+.|+
T Consensus 78 ~~~~~~~~gi 87 (350)
T 3h75_A 78 ILRLSQGSGI 87 (350)
T ss_dssp HHHHHTTSCC
T ss_pred HHHHHHhCCC
Confidence 8888887775
No 265
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=56.06 E-value=1.3e+02 Score=29.24 Aligned_cols=134 Identities=14% Similarity=0.118 Sum_probs=83.0
Q ss_pred EEEEecCCCChHHHHHHHHHHHhc-CcEEEEcCCChhHHHHHHHhhccCCCcEEecccCCCCCCCCCCCceEeecCCchH
Q 002364 72 NITMQSSNCSGFIGMVEALRFMET-DIVAIIGPQCSTVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSY 150 (930)
Q Consensus 72 ~l~~~D~~~~~~~a~~~a~~li~~-~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~a~~~~l~~~~~p~~~r~~p~~~~ 150 (930)
.+.+.+. +-..++..+.+++.. ++.+||.-. .++..+. +..++|+|... .+..+
T Consensus 40 ~I~vi~~--~le~av~~a~~~~~~~~~dVIISRG--gta~~Lr---~~~~iPVV~I~------------------vs~~D 94 (225)
T 2pju_A 40 NITPIQL--GFEKAVTYIRKKLANERCDAIIAAG--SNGAYLK---SRLSVPVILIK------------------PSGYD 94 (225)
T ss_dssp EEEEECC--CHHHHHHHHHHHTTTSCCSEEEEEH--HHHHHHH---TTCSSCEEEEC------------------CCHHH
T ss_pred eEEEecC--cHHHHHHHHHHHHhcCCCeEEEeCC--hHHHHHH---hhCCCCEEEec------------------CCHHH
Confidence 3444443 345678888887775 688998532 3333333 34579998632 34455
Q ss_pred HHHHHHHHHHhcCccEEEEEEEcCccccchHHHHHHHHhhcceEEEEEEecCCCCCCChhHHHHHHHHHHhCCceEEEEE
Q 002364 151 QMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLH 230 (930)
Q Consensus 151 ~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~ 230 (930)
..+++...-+ ++ +++++|.-.+. ...++.+.+.+. .++.... + .+.++....+.++++.+.++||-.
T Consensus 95 il~aL~~a~~-~~-~kIavVg~~~~--~~~~~~i~~ll~---~~i~~~~-~-----~~~ee~~~~i~~l~~~G~~vVVG~ 161 (225)
T 2pju_A 95 VLQFLAKAGK-LT-SSIGVVTYQET--IPALVAFQKTFN---LRLDQRS-Y-----ITEEDARGQINELKANGTEAVVGA 161 (225)
T ss_dssp HHHHHHHTTC-TT-SCEEEEEESSC--CHHHHHHHHHHT---CCEEEEE-E-----SSHHHHHHHHHHHHHTTCCEEEES
T ss_pred HHHHHHHHHh-hC-CcEEEEeCchh--hhHHHHHHHHhC---CceEEEE-e-----CCHHHHHHHHHHHHHCCCCEEECC
Confidence 5666666544 34 58999875443 123455555553 4444322 2 237899999999999999998763
Q ss_pred cChhhHHHHHHHHHHcCcc
Q 002364 231 VSPSLGFQVFSVAKYLGMM 249 (930)
Q Consensus 231 ~~~~~~~~~~~~a~~~g~~ 249 (930)
+ ...+.|+++|+.
T Consensus 162 ~------~~~~~A~~~Gl~ 174 (225)
T 2pju_A 162 G------LITDLAEEAGMT 174 (225)
T ss_dssp H------HHHHHHHHTTSE
T ss_pred H------HHHHHHHHcCCc
Confidence 2 346678888874
No 266
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=55.58 E-value=41 Score=34.93 Aligned_cols=85 Identities=6% Similarity=-0.040 Sum_probs=56.7
Q ss_pred HHhcCccEEEEEEEc----CccccchHHHHHHHHhhcceEEEEEEecCCCCCCChhHHHHHHHHHHhCCceEEEEEcChh
Q 002364 159 VSYYGWNAVSVIFVD----NEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPS 234 (930)
Q Consensus 159 l~~~~w~~v~ii~~d----~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~ 234 (930)
++.-.-+.++++..+ ++|.......+.+++++.|..+..... . .+...-...++.+.+.+.|.||+.....
T Consensus 56 l~~~~~~~Igvi~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~--~~~~~~~~~~~~l~~~~vdgiIi~~~~~ 130 (338)
T 3dbi_A 56 LSAKSTQTLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQLLLADG---K--HSAEEERQAIQYLLDLRCDAIMIYPRFL 130 (338)
T ss_dssp ----CCSEEEEEECTTTTSTTHHHHHHHHHHHHHHHTTCEEEEEEC---T--TSHHHHHHHHHHHHHTTCSEEEECCSSS
T ss_pred hhhCCCCEEEEEecCCcccChhHHHHHHHHHHHHHHCCCEEEEEeC---C--CChHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence 344455789988765 456677889999999999998775431 1 1244455577888888999999976554
Q ss_pred hHHHHHHHHHHcCc
Q 002364 235 LGFQVFSVAKYLGM 248 (930)
Q Consensus 235 ~~~~~~~~a~~~g~ 248 (930)
....+.+.+.+.|.
T Consensus 131 ~~~~~~~~~~~~~i 144 (338)
T 3dbi_A 131 SVDEIDDIIDAHSQ 144 (338)
T ss_dssp CHHHHHHHHHHCSS
T ss_pred ChHHHHHHHHcCCC
Confidence 44556666666553
No 267
>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A*
Probab=55.34 E-value=42 Score=35.61 Aligned_cols=108 Identities=13% Similarity=0.012 Sum_probs=69.1
Q ss_pred CceEeecCCchHHHHHHHHHHHhcCccEEEEEEEcCccccchHHHHHHHHhhcceEEEEEEecCCCCCCChhHHHHHHHH
Q 002364 139 PFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVK 218 (930)
Q Consensus 139 p~~~r~~p~~~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~ 218 (930)
|+-+...+... ..+.++++.++ +++.+|++...+. ...+.+.+.+++.|+++.+ ..+... .+.+++...++.
T Consensus 10 p~~i~~G~g~~---~~l~~~l~~~g-~~~livtd~~~~~-~~~~~v~~~L~~~g~~~~~-~~~~ge--~~~~~v~~~~~~ 81 (370)
T 1jq5_A 10 PAKYVQGKNVI---TKIANYLEGIG-NKTVVIADEIVWK-IAGHTIVNELKKGNIAAEE-VVFSGE--ASRNEVERIANI 81 (370)
T ss_dssp CSEEEEETTGG---GGHHHHHTTTC-SEEEEEECHHHHH-HTHHHHHHHHHTTTCEEEE-EECCSS--CBHHHHHHHHHH
T ss_pred CCeEEECcCHH---HHHHHHHHHcC-CeEEEEEChHHHH-HHHHHHHHHHHHcCCeEEE-EeeCCC--CCHHHHHHHHHH
Confidence 44445555433 23556777778 9999888554433 4678889999988988753 234333 345678888888
Q ss_pred HHhCCceEEEEEcCh--hhHHHHHHHHHHcCcccCCeEEEEeC
Q 002364 219 VALMESRVIVLHVSP--SLGFQVFSVAKYLGMMGNGYVWIATD 259 (930)
Q Consensus 219 l~~~~~~viil~~~~--~~~~~~~~~a~~~g~~~~~~~~i~~~ 259 (930)
+++.++|+||-.+.+ -+.+.++... .| ..++-|-|.
T Consensus 82 ~~~~~~d~IIavGGGsv~D~aK~iA~~--~~---~p~i~IPTT 119 (370)
T 1jq5_A 82 ARKAEAAIVIGVGGGKTLDTAKAVADE--LD---AYIVIVPTA 119 (370)
T ss_dssp HHHTTCSEEEEEESHHHHHHHHHHHHH--HT---CEEEEEESS
T ss_pred HHhcCCCEEEEeCChHHHHHHHHHHHh--cC---CCEEEeccc
Confidence 888899999977654 4566665522 23 345555554
No 268
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=54.31 E-value=77 Score=25.09 Aligned_cols=48 Identities=13% Similarity=0.239 Sum_probs=26.4
Q ss_pred CCchHHHHHHHHHHHhcCccEEEEEEEcCccccchHHHHHHHHhhcceEEE
Q 002364 146 QSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRIS 196 (930)
Q Consensus 146 p~~~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~ 196 (930)
-+|...+.....+++..|.+-..++|+.| ++-++.+......+|.++.
T Consensus 58 vddkewaekairfvkslgaqvliiiydqd---qnrleefsrevrrrgfevr 105 (134)
T 2l69_A 58 VDDKEWAEKAIRFVKSLGAQVLIIIYDQD---QNRLEEFSREVRRRGFEVR 105 (134)
T ss_dssp CSSHHHHHHHHHHHHHHCCCCEEEEECSC---HHHHHHHHHHHHHTTCCEE
T ss_pred EccHHHHHHHHHHHHhcCCeEEEEEEeCc---hhHHHHHHHHHHhcCceEE
Confidence 34455555556666666655555555433 3445555556666665543
No 269
>3s81_A Putative aspartate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta fold, cytosol; 1.80A {Salmonella enterica subsp} PDB: 3s7z_A
Probab=54.13 E-value=21 Score=35.94 Aligned_cols=39 Identities=10% Similarity=0.009 Sum_probs=28.2
Q ss_pred HHHHHHHHhcCcEEEEcCCChhHHHHHHHhhccCCCcEEe
Q 002364 86 MVEALRFMETDIVAIIGPQCSTVAHIVSYVSNELQVPLLS 125 (930)
Q Consensus 86 ~~~a~~li~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is 125 (930)
.+.+..|.+.++.+|+-+-.+... .+..+-+..++|+|.
T Consensus 89 ~~~~~~L~~~Gad~IVIaCNTah~-~l~~lr~~~~iPvig 127 (268)
T 3s81_A 89 ERYLHMLEDAGAECIVIPCNTAHY-WFDDLQNVAKARMIS 127 (268)
T ss_dssp HHHHHHHHHTTCSEEECSCSGGGG-GHHHHHHHCSSEEEC
T ss_pred HHHHHHHHHcCCCEEEEeCCCHHH-HHHHHHHHCCCCEEc
Confidence 445555666699999987777655 556666778999996
No 270
>3ce9_A Glycerol dehydrogenase; NP_348253.1, 3-dehydroquinate syntha structural genomics, joint center for structural genomics; HET: MSE; 2.37A {Clostridium acetobutylicum atcc 824}
Probab=53.64 E-value=45 Score=35.14 Aligned_cols=109 Identities=7% Similarity=0.056 Sum_probs=69.4
Q ss_pred CceEeecCCchHHHHHHHHHHHhcCccEEEEEEEcCccccchHHHHHHHHhhcceEEEEEEecCCCCCCChhHHHHHHHH
Q 002364 139 PFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVK 218 (930)
Q Consensus 139 p~~~r~~p~~~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~ 218 (930)
|+-+...+... ..+.++++.++.+++.+|++...+. ...+.+.+.+++.|+++......+ + .+.+.+... +.
T Consensus 12 p~~i~~G~g~~---~~l~~~l~~~g~~~~livtd~~~~~-~~~~~v~~~L~~~g~~~~~~~~~~-~--~~~~~v~~~-~~ 83 (354)
T 3ce9_A 12 PLILEVGNNKI---YNIGQIIKKGNFKRVSLYFGEGIYE-LFGETIEKSIKSSNIEIEAVETVK-N--IDFDEIGTN-AF 83 (354)
T ss_dssp CSEEEEESSCG---GGHHHHHGGGTCSEEEEEEETTHHH-HHHHHHHHHHHTTTCEEEEEEEEC-C--CBHHHHHHH-HT
T ss_pred CcEEEECCCHH---HHHHHHHHhcCCCeEEEEECccHHH-HHHHHHHHHHHHcCCeEEEEecCC-C--CCHHHHHHH-HH
Confidence 55455555433 2356677888888999998655443 456888999998888765332233 3 246677777 77
Q ss_pred HHhCCceEEEEEcCh--hhHHHHHHHHHHcCcccCCeEEEEeCc
Q 002364 219 VALMESRVIVLHVSP--SLGFQVFSVAKYLGMMGNGYVWIATDW 260 (930)
Q Consensus 219 l~~~~~~viil~~~~--~~~~~~~~~a~~~g~~~~~~~~i~~~~ 260 (930)
+++.++|+||-.+.+ -+++.++... .| ..++-|-|..
T Consensus 84 ~~~~~~d~IIavGGGsv~D~aK~vA~~--~~---~p~i~IPTT~ 122 (354)
T 3ce9_A 84 KIPAEVDALIGIGGGKAIDAVKYMAFL--RK---LPFISVPTST 122 (354)
T ss_dssp TSCTTCCEEEEEESHHHHHHHHHHHHH--HT---CCEEEEESCC
T ss_pred hhhcCCCEEEEECChHHHHHHHHHHhh--cC---CCEEEecCcc
Confidence 777889999977654 4566655522 23 3455555543
No 271
>1ryo_A Serotransferrin; iron transport, metal transport; 1.20A {Homo sapiens} SCOP: c.94.1.2 PDB: 1bp5_A 1btj_A 1n84_A 1oqg_A 2o84_X 1fqf_A 1fqe_A 1oqh_A 2o7u_B 1jqf_A 1n7x_A 3fgs_A 1a8e_A 1a8f_A 1suv_C 1dtg_A 1d3k_A 1d4n_A 1n7w_A 1b3e_A ...
Probab=53.53 E-value=1.3e+02 Score=31.16 Aligned_cols=41 Identities=20% Similarity=0.228 Sum_probs=27.8
Q ss_pred eHHHHHHHHHhC---CCcccEEEEecCCCCCCCCHHHHHHHHHcCcccEEEe
Q 002364 494 CIDVFTAAVNLL---PYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVG 542 (930)
Q Consensus 494 ~~dl~~~l~~~l---~f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~D~~~~ 542 (930)
|-++.+.+...+ + .+++.+. ..++.++++.+.+|++|++.-
T Consensus 19 C~~l~~~~~~~~~~~~--~~vecv~------~~dy~~ci~ai~~g~aD~~~l 62 (327)
T 1ryo_A 19 CQSFRDHMKSVIPSDG--PSVACVK------KASYLDCIRAIAANEADAVTL 62 (327)
T ss_dssp HHHHHHHHHHHSCTTS--CEEEEEE------ESSHHHHHHHHHTTSCCBEEE
T ss_pred HHHHHHHHhhccccCC--CceEEEe------cCCHHHHHHHHHcCCCcEEEe
Confidence 344445554444 4 3455554 257999999999999999864
No 272
>3isp_A HTH-type transcriptional regulator RV1985C/MT2039; ROD shaped structure, DNA binding domain, regulatory domain, DNA-binding; 2.70A {Mycobacterium tuberculosis}
Probab=53.53 E-value=64 Score=32.59 Aligned_cols=54 Identities=11% Similarity=-0.052 Sum_probs=36.2
Q ss_pred ccEEEEecCCCCCCCCHHHHHHHHHcCcccEEEeeeeeecCceeeeeecccccccceEEEEeccC
Q 002364 509 VPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGDITIVTNRTKIVDFSQPYAASGLVVVVPFRK 573 (930)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~t~~r~~~vdft~p~~~~~~~~lv~~~~ 573 (930)
+++.+.. ++...++..|.+|++|+++...... ...+ -..|+....+++++++..
T Consensus 120 v~i~~~~-------~~~~~~~~~l~~g~~D~~i~~~~~~---~~~l-~~~~l~~~~~~~v~~~~~ 173 (303)
T 3isp_A 120 VLLDVRI-------EDQDHSARLLREGVAMGAVTTERNP---VPGC-RVHPLGEMRYLPVASRPF 173 (303)
T ss_dssp EEEEEEE-------CCHHHHHHHHHTTSCSEEEESCCSC---CTTE-EEEEEEEEEEEEEECHHH
T ss_pred ceEEEEe-------cChHHHHHHHHcCcceEEEecCCCC---CCCe-EEEEccceeEEEEecchH
Confidence 5566554 5578899999999999987643221 1222 235777788888887653
No 273
>2oho_A Glutamate racemase; isomerase; 2.25A {Streptococcus pyogenes m1 gas} PDB: 2ohg_A 2ohv_A*
Probab=52.38 E-value=41 Score=33.92 Aligned_cols=38 Identities=16% Similarity=0.163 Sum_probs=27.3
Q ss_pred HHHHHHhcCcEEEEcCCChhHHHHHHHhhccCCCcEEe
Q 002364 88 EALRFMETDIVAIIGPQCSTVAHIVSYVSNELQVPLLS 125 (930)
Q Consensus 88 ~a~~li~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is 125 (930)
.+..|.+.++.+|+-+-++..+.++..+-+..++|+|.
T Consensus 66 ~~~~L~~~g~d~iviaCNTas~~~l~~lr~~~~iPvig 103 (273)
T 2oho_A 66 LVNFLLTQNVKMIVFACNTATAVAWEEVKAALDIPVLG 103 (273)
T ss_dssp HHHHHHTTTCSEEEECCHHHHHHHHHHHHHHCSSCEEE
T ss_pred HHHHHHHCCCCEEEEeCchHhHHHHHHHHHhCCCCEEe
Confidence 34445555899998876666655566777778999996
No 274
>2vd3_A ATP phosphoribosyltransferase; metal-binding, glycosyltransferase, HISG, histidine, magnesi transferase; HET: HIS; 2.45A {Methanobacterium thermoautotrophicum}
Probab=51.63 E-value=22 Score=35.96 Aligned_cols=101 Identities=19% Similarity=0.182 Sum_probs=60.5
Q ss_pred CCCChHHh-hhCCCCeEEEeCchHHHHHHHhhccccccceecCCHHHHHHHHhcCCCCCceEEEEecchhHHHHHhcCcc
Q 002364 681 PINGIESL-RKSDDPIGYQEGSFAEYYLSQELNISKSRLVALRTPEDYAKALKDGPGKGGVAAVVDERPYVELFLSSQCS 759 (930)
Q Consensus 681 ~i~s~~dL-~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~i~~~~~~~~~~~~~~~ 759 (930)
.+++++|| . +++|+..-......||. +.+.+ .+++.....-|..- ..|-.|++++-.....-+..+ +
T Consensus 105 ~~~~~~~l~~--~~RIATkyp~l~~~yf~-~~gi~-~~ii~l~GsvE~ap------~~GlADaIvDivsTG~TLraN--g 172 (289)
T 2vd3_A 105 TIRGPEDIPR--GAVIATEFPGITENYLR-EHGID-AEVVELTGSTEIAP------FIGVADLITDLSSTGTTLRMN--H 172 (289)
T ss_dssp SCCSGGGCCT--TCEEEESCHHHHHHHHH-HTTCC-CEEEECSSCGGGTT------TTTSCSEEEEEESSTHHHHHT--T
T ss_pred CCCCHHHhcC--CCEEEeCcHHHHHHHHH-HcCCc-EEEEECCCceeecc------CCCcccEEEEEeCChHHHHHC--C
Confidence 56677888 5 77888877777888884 45553 45555543333222 227788888866655544443 5
Q ss_pred EEEeCccccccceeeeeCCCC-cc-hHHHHHHHHhhh
Q 002364 760 FRIVGQEFTKSGWGFAFPRDS-PL-AVDLSSAILELA 794 (930)
Q Consensus 760 l~~~~~~~~~~~~~~~~~k~s-pl-~~~i~~~i~~l~ 794 (930)
|..++.. ....-.+...+.+ +. .+.++..+.++.
T Consensus 173 L~~ie~I-~~ssA~LI~n~~s~~~k~~~i~~l~~rl~ 208 (289)
T 2vd3_A 173 LRVIDTI-LESSVKLIANRESYATKSGIIEELRTGIR 208 (289)
T ss_dssp EEEEEEE-EEECEEEEECHHHHHHSHHHHHHHHHHHH
T ss_pred CEEeEEE-EeeEEEEEEccchhhhHHHHHHHHHHHHH
Confidence 7777444 4445556666665 32 345666666654
No 275
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=51.55 E-value=38 Score=34.32 Aligned_cols=84 Identities=8% Similarity=0.022 Sum_probs=58.6
Q ss_pred CccEEEEEEE---cCccccchHHHHHHHHhhc-ceEEEEEEecCCCCCCChhHHHHHHHHHHhCCceEEEEEcChh-hHH
Q 002364 163 GWNAVSVIFV---DNEYGRNGVSALNDKLAER-RCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPS-LGF 237 (930)
Q Consensus 163 ~w~~v~ii~~---d~~~g~~~~~~l~~~l~~~-g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~-~~~ 237 (930)
.-.+|+++.. ++.|.......+.+++++. |..+......... .+.......++.+...+.|.||+..... ...
T Consensus 7 ~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~~g~~~~~~~~~~~~--~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~ 84 (304)
T 3gbv_A 7 KKYTFACLLPKHLEGEYWTDVQKGIREAVTTYSDFNISANITHYDP--YDYNSFVATSQAVIEEQPDGVMFAPTVPQYTK 84 (304)
T ss_dssp CCEEEEEEEECCCTTSHHHHHHHHHHHHHHHTGGGCEEEEEEEECS--SCHHHHHHHHHHHHTTCCSEEEECCSSGGGTH
T ss_pred CcceEEEEecCCCCchHHHHHHHHHHHHHHHHHhCCeEEEEEcCCC--CCHHHHHHHHHHHHhcCCCEEEECCCChHHHH
Confidence 3467887774 4567778889999999988 7776654332222 2355566778888888999999976544 345
Q ss_pred HHHHHHHHcCc
Q 002364 238 QVFSVAKYLGM 248 (930)
Q Consensus 238 ~~~~~a~~~g~ 248 (930)
.+++.+.+.|+
T Consensus 85 ~~~~~~~~~~i 95 (304)
T 3gbv_A 85 GFTDALNELGI 95 (304)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHCCC
Confidence 67788877775
No 276
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=51.47 E-value=49 Score=33.25 Aligned_cols=79 Identities=6% Similarity=0.058 Sum_probs=58.2
Q ss_pred cEEEEEEE--cCccccchHHHHHHHHhhcceEEEEEEecCCCCCCChhHHHHHHHHHHhCCceEEEEEcCh-hhHHHHHH
Q 002364 165 NAVSVIFV--DNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSP-SLGFQVFS 241 (930)
Q Consensus 165 ~~v~ii~~--d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~-~~~~~~~~ 241 (930)
++|+++.. ++.|.......+.+++++.|..+..... . .+.......++.+.+.+.|.||+.... ......++
T Consensus 6 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~--~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~ 80 (291)
T 3l49_A 6 KTIGITAIGTDHDWDLKAYQAQIAEIERLGGTAIALDA---G--RNDQTQVSQIQTLIAQKPDAIIEQLGNLDVLNPWLQ 80 (291)
T ss_dssp CEEEEEESCCSSHHHHHHHHHHHHHHHHTTCEEEEEEC---T--TCHHHHHHHHHHHHHHCCSEEEEESSCHHHHHHHHH
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEEcC---C--CCHHHHHHHHHHHHHcCCCEEEEeCCChhhhHHHHH
Confidence 57888875 4567778889999999999998875432 1 224556677888888889999987654 45566788
Q ss_pred HHHHcCc
Q 002364 242 VAKYLGM 248 (930)
Q Consensus 242 ~a~~~g~ 248 (930)
.+.+.|+
T Consensus 81 ~~~~~~i 87 (291)
T 3l49_A 81 KINDAGI 87 (291)
T ss_dssp HHHHTTC
T ss_pred HHHHCCC
Confidence 8888775
No 277
>3lr1_A Tungstate ABC transporter, periplasmic tungstate- binding protein; the tungstate ABC transporter, structural genomics, PSI, MCSG; 1.80A {Geobacter sulfurreducens}
Probab=51.17 E-value=10 Score=37.34 Aligned_cols=75 Identities=12% Similarity=-0.013 Sum_probs=51.4
Q ss_pred EeeeHHHHHHHHHhCCCcccEEEEecCCCCCCCCHHHHHHHHHcCcccEEEeeeeeecCce---eeeeecccccccceEE
Q 002364 491 QGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGDITIVTNRT---KIVDFSQPYAASGLVV 567 (930)
Q Consensus 491 ~G~~~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~t~~r~---~~vdft~p~~~~~~~~ 567 (930)
.|+--+|+..+.++.+.++.+.+ +.-..++.++.+|.+|+.+..-....+.. ....-..|+....+++
T Consensus 18 ~~ll~~L~~~Fek~~gv~V~~~~---------~gSg~ll~qi~~G~aDV~isa~~~~~~~l~~~g~~~~~~~~~~n~lVl 88 (236)
T 3lr1_A 18 SGLLKVLLPPFEKKNNVKVDVIA---------VGTGQALKLGEAGDVDVVFVHARKLEDKFVADGFGVNRKDVMYNDFVI 88 (236)
T ss_dssp HCHHHHHHHHHHHHHTCEEEEEE---------ECHHHHHHHHHTTSCSEEEECCHHHHHHHHHTTSEEEEEEEEECCEEE
T ss_pred hHHHHHHHHHHHHHhCCeEEEEE---------cChHHHHHHHhcCCCCEEeecCchhHHHHHhcCCCcceEEEEcCcEEE
Confidence 46777889999888886554444 33667899999999999876433222111 1112246899999999
Q ss_pred EEeccCC
Q 002364 568 VVPFRKL 574 (930)
Q Consensus 568 lv~~~~~ 574 (930)
++|+.++
T Consensus 89 V~P~~~P 95 (236)
T 3lr1_A 89 VGPKNDP 95 (236)
T ss_dssp EECTTCT
T ss_pred EEECCCh
Confidence 9998763
No 278
>3ist_A Glutamate racemase; structural genomics, cell WALL biogenesis/degradation, isomerase, peptidoglycan synthesis; HET: MSE; 1.65A {Listeria monocytogenes} PDB: 3hfr_A* 3isv_A*
Probab=49.37 E-value=53 Score=33.00 Aligned_cols=40 Identities=10% Similarity=0.172 Sum_probs=29.5
Q ss_pred HHHHHHHHhcCcEEEEcCCChhHHHHHHHhhccCCCcEEe
Q 002364 86 MVEALRFMETDIVAIIGPQCSTVAHIVSYVSNELQVPLLS 125 (930)
Q Consensus 86 ~~~a~~li~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is 125 (930)
.+.+..|.+.++.+|+=+-.+..+.++..+-+..++|+|.
T Consensus 57 ~~~~~~L~~~g~~~IVIACNTa~~~al~~lr~~~~iPvig 96 (269)
T 3ist_A 57 WEMTNFLVDRGIKMLVIACNTATAAALYDIREKLDIPVIG 96 (269)
T ss_dssp HHHHHHHHHTTCSEEEECCHHHHHHHHHHHHHHCSSCEEE
T ss_pred HHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHhcCCCEEe
Confidence 3444555566999999877777666677777788999996
No 279
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=48.80 E-value=56 Score=33.12 Aligned_cols=78 Identities=8% Similarity=0.050 Sum_probs=56.9
Q ss_pred cEEEEEEEc--CccccchHHHHHHHHhhcceEEEEEEecCCCCCCChhHHHHHHHHHHhCCceEEEEEcCh-hhHHHHHH
Q 002364 165 NAVSVIFVD--NEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSP-SLGFQVFS 241 (930)
Q Consensus 165 ~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~-~~~~~~~~ 241 (930)
.+++++..+ ++|.....+.+.+++++.|..+..... . +.......++.+.+.+.|.||+.... ......++
T Consensus 3 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~---~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~~ 76 (306)
T 8abp_A 3 LKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAV---P---DGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVA 76 (306)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHHHHHHTEEEEEEEC---C---SHHHHHHHHHHHHHTTCCEEEEECSCGGGHHHHHH
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHHHcCCEEEEeCC---C---CHHHHHHHHHHHHHcCCCEEEEeCCCchhhHHHHH
Confidence 367777743 567788889999999999988865432 1 25556677888888889999987654 44556788
Q ss_pred HHHHcCc
Q 002364 242 VAKYLGM 248 (930)
Q Consensus 242 ~a~~~g~ 248 (930)
++.+.|+
T Consensus 77 ~~~~~~i 83 (306)
T 8abp_A 77 KARGYDM 83 (306)
T ss_dssp HHHHTTC
T ss_pred HHHHCCC
Confidence 8888775
No 280
>3hl0_A Maleylacetate reductase; structur genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE NAD EPE; 1.60A {Agrobacterium tumefaciens str}
Probab=47.87 E-value=27 Score=36.83 Aligned_cols=97 Identities=13% Similarity=0.088 Sum_probs=63.3
Q ss_pred HHHHHHHHhcCccEEEEEEEcCccccchHHHHHHHHhhcceEEEEEEecCCCCCCChhHHHHHHHHHHhCCceEEEEEcC
Q 002364 153 TAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVS 232 (930)
Q Consensus 153 ~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~ 232 (930)
..+.++++.+|.+++.+|++.... ...+.+.+.+++.++.+ + ..+.++ .+.+.+...++.+++.++|+||-.+.
T Consensus 23 ~~l~~~l~~~g~~r~liVtd~~~~--~~~~~v~~~L~~~~~~v-~-~~v~~~--p~~~~v~~~~~~~~~~~~D~IIavGG 96 (353)
T 3hl0_A 23 ADVAEEIRRLGLSRALVLSTPQQK--GDAEALASRLGRLAAGV-F-SEAAMH--TPVEVTKTAVEAYRAAGADCVVSLGG 96 (353)
T ss_dssp GGHHHHHHHTTCCCEEEECCGGGH--HHHHHHHHHHGGGEEEE-E-CCCCTT--CBHHHHHHHHHHHHHTTCSEEEEEES
T ss_pred HHHHHHHHHhCCCEEEEEecCchh--hHHHHHHHHHhhCCcEE-e-cCcCCC--CcHHHHHHHHHHHhccCCCEEEEeCC
Confidence 346677888898999998855433 35788888888866543 2 223333 34677888888888899999988766
Q ss_pred hh--hHHHHHHHHHHcCcccCCeEEEEeCc
Q 002364 233 PS--LGFQVFSVAKYLGMMGNGYVWIATDW 260 (930)
Q Consensus 233 ~~--~~~~~~~~a~~~g~~~~~~~~i~~~~ 260 (930)
+. +++.++... .+ ..++-|-|..
T Consensus 97 Gs~iD~aK~iA~~--~~---~p~i~IPTTa 121 (353)
T 3hl0_A 97 GSTTGLGKAIALR--TD---AAQIVIPTTY 121 (353)
T ss_dssp HHHHHHHHHHHHH--HC---CEEEEEECSS
T ss_pred cHHHHHHHHHHhc--cC---CCEEEEeCCc
Confidence 53 455555432 22 3455555543
No 281
>1zuw_A Glutamate racemase 1; (R)-glutamate, peptidoglycan biosynthesi isomerase; HET: DGL; 1.75A {Bacillus subtilis}
Probab=47.86 E-value=1.4e+02 Score=29.93 Aligned_cols=130 Identities=11% Similarity=0.070 Sum_probs=70.5
Q ss_pred HHHHHHHHHHh-cCcEEEEcCCChhHHHHHHHhhccCCCcEEecccCCCCCCCCCCCceEeecCCchHHHHHHH-HHHHh
Q 002364 84 IGMVEALRFME-TDIVAIIGPQCSTVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVA-EMVSY 161 (930)
Q Consensus 84 ~a~~~a~~li~-~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~a~~~~l~~~~~p~~~r~~p~~~~~~~ai~-~~l~~ 161 (930)
...+.+..|.+ .++.+|+-+-++.++.++..+-+..++|+|... .+.+ ..++.
T Consensus 53 ~~~~~~~~L~~~~g~d~iViACNTas~~~l~~lr~~~~iPVigii-------------------------epa~~~A~~~ 107 (272)
T 1zuw_A 53 YTWELTNYLLENHHIKMLVIACNTATAIALDDIQRSVGIPVVGVI-------------------------QPGARAAIKV 107 (272)
T ss_dssp HHHHHHHHHHHHSCCSEEEECCHHHHHHHHHHHHHHCSSCEEESH-------------------------HHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCCEEEEeCchhhHHHHHHHHHHCCCCEEccc-------------------------HHHHHHHHHh
Confidence 34455666777 789999887766665566777777899999631 1111 12233
Q ss_pred cCccEEEEEEEcCccccchHHHHHHHHhhc--ceEEEEEEe------cCCCCCCC----hhHHHHHHHHHHhCCceEEEE
Q 002364 162 YGWNAVSVIFVDNEYGRNGVSALNDKLAER--RCRISYKSG------IPPESGVN----TGYVMDLLVKVALMESRVIVL 229 (930)
Q Consensus 162 ~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~--g~~v~~~~~------~~~~~~~~----~~~~~~~l~~l~~~~~~viil 229 (930)
-+-++|+++.+....-.. .+++.+++. +.++..... +..+. .+ ...+...++.+.+.++|.||+
T Consensus 108 ~~~~rIgVlaT~~T~~s~---~y~~~i~~~~~~~~v~~~~~~~~v~~ve~g~-~~~~~~~~~l~~~l~~l~~~~~D~iVL 183 (272)
T 1zuw_A 108 TDNQHIGVIGTENTIKSN---AYEEALLALNPDLKVENLACPLLVPFVESGK-FLDQTADEIVKTSLYPLKDTSIDSLIL 183 (272)
T ss_dssp CSSSEEEEEECHHHHHTT---HHHHHHHHHCTTCEEEEEECTTHHHHHTSCC-CCHHHHHHHHHHHHHHHHHSCCSEEEE
T ss_pred cCCCEEEEEEChhhhhhh---HHHHHHHHhCCCCEEEeccCHHHHHHHHCCC-CCCHHHHHHHHHHHHHHHhcCCCEEEE
Confidence 455788888754321111 133444433 555532111 11110 11 233555566666678899998
Q ss_pred EcCh-hhHHHHHHH
Q 002364 230 HVSP-SLGFQVFSV 242 (930)
Q Consensus 230 ~~~~-~~~~~~~~~ 242 (930)
.|.. ......+++
T Consensus 184 GCTh~pll~~~i~~ 197 (272)
T 1zuw_A 184 GCTHYPILKEAIQR 197 (272)
T ss_dssp ESTTGGGGHHHHHH
T ss_pred CccCHHHHHHHHHH
Confidence 7765 333333433
No 282
>3dmy_A Protein FDRA; predicted actyl-COA synthetase, nysgrc, PSI-II, STRU genomics, protein structure initiative; 2.07A {Escherichia coli}
Probab=47.44 E-value=2.5e+02 Score=30.70 Aligned_cols=144 Identities=12% Similarity=0.057 Sum_probs=85.1
Q ss_pred hHHHHHHHHHHHhcCcEEEEcC--CChhHHHHHHHhhccCCCcEEecccCCCCCCCCCCCceEeecCCchHHHHHHHHHH
Q 002364 82 GFIGMVEALRFMETDIVAIIGP--QCSTVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMV 159 (930)
Q Consensus 82 ~~~a~~~a~~li~~~v~aiiGp--~~s~~~~~v~~~~~~~~iP~is~~a~~~~l~~~~~p~~~r~~p~~~~~~~ai~~~l 159 (930)
+..+...+.++.+.++.+||=. ..-.....+...+.++++.+|.|.+ ....... +...+..
T Consensus 46 a~~v~~~v~e~~~~Gv~~viis~Gf~~~~~~~l~~~A~~~g~rliGPNc--G~~~~~~----~~~~f~~----------- 108 (480)
T 3dmy_A 46 GEYAAELANQALDRNLNVMMFSDNVTLEDEIQLKTRAREKGLLVMGPDC--GTSMIAG----TPLAFAN----------- 108 (480)
T ss_dssp HHHHHHHHHHHHHTTCEEEECCCCCCHHHHHHHHHHHHHTTCCEECSSC--CEEEETT----EEEESCC-----------
T ss_pred HHHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEecCc--cccccCC----ccccccC-----------
Confidence 4455566677777766644421 1123345577788888888888766 2111111 1111111
Q ss_pred HhcCccEEEEEEEcCccccchHHHHHHHHhhcceEEEEEEecCCCC---CCChhHHHHHHHHHHh-CCceEEEEEcCh--
Q 002364 160 SYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPES---GVNTGYVMDLLVKVAL-MESRVIVLHVSP-- 233 (930)
Q Consensus 160 ~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~---~~~~~~~~~~l~~l~~-~~~~viil~~~~-- 233 (930)
.+.--+|++|.+.... ...+.+.+.+.|+-++....+-..+ ...+.++...|+.+.+ .++++|+++..+
T Consensus 109 -~~~~G~vaivSqSGal----~~~i~~~~~~~g~G~S~~Vs~Gn~~l~~~i~dv~~~D~l~~l~~Dp~T~~I~ly~E~~~ 183 (480)
T 3dmy_A 109 -VMPEGNIGVIGASGTG----IQELCSQIALAGEGITHAIGLGGRDLSREVGGISALTALEMLSADEKSEVLAFVSKPPA 183 (480)
T ss_dssp -CCCEEEEEEEESCSHH----HHHHHHHHHHTTCCEEEEEECCTTTTSTTTTTHHHHHHHHHHHTCTTCCEEEEEESCCC
T ss_pred -CCCCCCEEEEeccHHH----HHHHHHHHHHcCCCceEEEEcCCCccccccCCCCHHHHHHHHhcCCCCCEEEEEEecCC
Confidence 0123589999876653 4455667777887777655543220 0145678888888765 578999998853
Q ss_pred -hhHHHHHHHHHHcC
Q 002364 234 -SLGFQVFSVAKYLG 247 (930)
Q Consensus 234 -~~~~~~~~~a~~~g 247 (930)
..+.+|+++|++.+
T Consensus 184 e~~~~~f~~~ar~~~ 198 (480)
T 3dmy_A 184 EAVRLKIVNAMKATG 198 (480)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHhCC
Confidence 33477998887643
No 283
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=47.00 E-value=49 Score=33.49 Aligned_cols=80 Identities=13% Similarity=0.054 Sum_probs=54.0
Q ss_pred cEEEEEEE--cCccccchHHHHHHHHhhcceEEEEEEecCCCCCCChhHHHHHHHHHHhCCceEEEEEcChh-hHHHHHH
Q 002364 165 NAVSVIFV--DNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPS-LGFQVFS 241 (930)
Q Consensus 165 ~~v~ii~~--d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~-~~~~~~~ 241 (930)
.+|+++.. +++|.......+.+++++.|+++.... +.. .+.......++.+...+.|.||+..... .....++
T Consensus 5 ~~Ig~i~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~--~~~--~~~~~~~~~~~~l~~~~vdgiii~~~~~~~~~~~~~ 80 (303)
T 3d02_A 5 KTVVNISKVDGMPWFNRMGEGVVQAGKEFNLNASQVG--PSS--TDAPQQVKIIEDLIARKVDAITIVPNDANVLEPVFK 80 (303)
T ss_dssp EEEEEECSCSSCHHHHHHHHHHHHHHHHTTEEEEEEC--CSS--SCHHHHHHHHHHHHHTTCSEEEECCSCHHHHHHHHH
T ss_pred eEEEEEeccCCChHHHHHHHHHHHHHHHcCCEEEEEC--CCC--CCHHHHHHHHHHHHHcCCCEEEEecCChHHHHHHHH
Confidence 46777763 456778888999999999998875321 111 2244555667777778899998875543 3345677
Q ss_pred HHHHcCc
Q 002364 242 VAKYLGM 248 (930)
Q Consensus 242 ~a~~~g~ 248 (930)
.+.+.|.
T Consensus 81 ~~~~~~i 87 (303)
T 3d02_A 81 KARDAGI 87 (303)
T ss_dssp HHHHTTC
T ss_pred HHHHCCC
Confidence 7777664
No 284
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=46.30 E-value=29 Score=35.73 Aligned_cols=80 Identities=11% Similarity=0.069 Sum_probs=54.7
Q ss_pred cEEEEEEE--cCccccchHHHHHHHHhhcceEEEEEEecCCCCCCChhHHHHHHHHHHhCCceEEEEEcChh-hHHHHHH
Q 002364 165 NAVSVIFV--DNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPS-LGFQVFS 241 (930)
Q Consensus 165 ~~v~ii~~--d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~-~~~~~~~ 241 (930)
++|+++.. +++|.....+.+.+++++.|+++... .+.. .+...-...++.+...+.|.||+..... .....++
T Consensus 4 ~~Igvi~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~--~~~~--~d~~~q~~~i~~li~~~vdgiii~~~~~~~~~~~~~ 79 (316)
T 1tjy_A 4 ERIAFIPKLVGVGFFTSGGNGAQEAGKALGIDVTYD--GPTE--PSVSGQVQLVNNFVNQGYDAIIVSAVSPDGLCPALK 79 (316)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHHHHHHTCEEEEC--CCSS--CCHHHHHHHHHHHHHTTCSEEEECCSSSSTTHHHHH
T ss_pred CEEEEEeCCCCChHHHHHHHHHHHHHHHhCCEEEEE--CCCC--CCHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHH
Confidence 57788763 45677778888999999999877532 1212 2344455677777778899998865443 3356788
Q ss_pred HHHHcCc
Q 002364 242 VAKYLGM 248 (930)
Q Consensus 242 ~a~~~g~ 248 (930)
.+.+.|.
T Consensus 80 ~a~~~gi 86 (316)
T 1tjy_A 80 RAMQRGV 86 (316)
T ss_dssp HHHHTTC
T ss_pred HHHHCcC
Confidence 8887774
No 285
>1p99_A Hypothetical protein PG110; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.70A {Staphylococcus aureus subsp} SCOP: c.94.1.1
Probab=46.25 E-value=1e+02 Score=31.26 Aligned_cols=36 Identities=11% Similarity=0.121 Sum_probs=25.2
Q ss_pred HHHHHHhCCCcccEEEEecCCCCCCCCHHHHHHHHHcCcccEEE
Q 002364 498 FTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVV 541 (930)
Q Consensus 498 ~~~l~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~D~~~ 541 (930)
++...++.|++ ++++.+ .++.....+|.+|++|+..
T Consensus 56 ~~~~~~~~G~~--Ve~~~f------~~~~~~~~AL~~G~iD~~~ 91 (295)
T 1p99_A 56 VKELAKKDDID--VEIKHF------SDYNLPNKALNDGDIDMNA 91 (295)
T ss_dssp HHHHHGGGTCC--EEEEEC------SSTTSHHHHHHTTSSSEEE
T ss_pred HHHHHHHcCCe--EEEEEe------CChHHHHHHHHcCCCCEEc
Confidence 33455556965 555554 3477889999999999864
No 286
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Probab=45.92 E-value=30 Score=36.03 Aligned_cols=59 Identities=14% Similarity=0.131 Sum_probs=50.4
Q ss_pred ccchhhhHHHHHHhhhcCcC--c--ccccchhhhHHHHHHHHHhhhhhhhhhhheeeeccccc
Q 002364 621 RQVITILWFSLSTLFFAHKE--N--TVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLY 679 (930)
Q Consensus 621 ~~~~~~~~~~~~~l~~~~~~--~--~~s~s~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~ 679 (930)
..+..+|||++.++...|-. . |.++.++++..+-.+.++++.+.-++-+.+-++.|+-.
T Consensus 93 ~sf~~af~fSv~T~TTvGYGd~~p~~~~~~~~~l~~~~~l~G~~l~a~~~giv~ak~srp~~r 155 (343)
T 3spc_A 93 NGFVAAFLFSIETQTTIGYGFRCVTEECPLAVFMVVVQSIVGCIIDSFMIGAIMAKMARPKKR 155 (343)
T ss_dssp CSHHHHHHHHHHHHSCCCCSSSEECSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCC
T ss_pred CCHHHHhheeeeeeEeecCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhh
Confidence 46889999999999977644 3 45888999999999999999999999999999887643
No 287
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=45.80 E-value=48 Score=33.06 Aligned_cols=78 Identities=12% Similarity=0.033 Sum_probs=57.3
Q ss_pred ccEEEEEEEc--CccccchHHHHHHHHhhcceEEEEEEecCCCCCCChhHHHHHHHHHHhCCceEEEEEcChhhHHHHHH
Q 002364 164 WNAVSVIFVD--NEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFS 241 (930)
Q Consensus 164 w~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~~~~ 241 (930)
-+.|+++..+ +.|.......+.+++++.|..+..... . .+...-...++.+.+.+.|.||+..... ...++
T Consensus 7 s~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~-~----~~~~~~~~~~~~l~~~~vdgiIi~~~~~--~~~~~ 79 (276)
T 3jy6_A 7 SKLIAVIVANIDDYFSTELFKGISSILESRGYIGVLFDA-N----ADIEREKTLLRAIGSRGFDGLILQSFSN--PQTVQ 79 (276)
T ss_dssp CCEEEEEESCTTSHHHHHHHHHHHHHHHTTTCEEEEEEC-T----TCHHHHHHHHHHHHTTTCSEEEEESSCC--HHHHH
T ss_pred CcEEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeC-C----CCHHHHHHHHHHHHhCCCCEEEEecCCc--HHHHH
Confidence 3678888754 567778889999999999998775331 1 1244556678888888999999987665 66777
Q ss_pred HHHHcCc
Q 002364 242 VAKYLGM 248 (930)
Q Consensus 242 ~a~~~g~ 248 (930)
.+.+.|+
T Consensus 80 ~l~~~~i 86 (276)
T 3jy6_A 80 EILHQQM 86 (276)
T ss_dssp HHHTTSS
T ss_pred HHHHCCC
Confidence 7877664
No 288
>2jfn_A Glutamate racemase; cell WALL, isomerase, cell shape, UDP- murnac-Ala, peptidoglycan biosynthesis, peptidoglycan synthesis; HET: GLU UMA; 1.9A {Escherichia coli}
Probab=44.69 E-value=73 Score=32.26 Aligned_cols=40 Identities=5% Similarity=0.088 Sum_probs=28.1
Q ss_pred HHHHHHHHh-cCcEEEEcCCChhHHHHHHHhhccCCCcEEe
Q 002364 86 MVEALRFME-TDIVAIIGPQCSTVAHIVSYVSNELQVPLLS 125 (930)
Q Consensus 86 ~~~a~~li~-~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is 125 (930)
...+..+++ .++.+|+-+-++..+..+..+-+..++|+|.
T Consensus 73 ~~i~~~ll~~~g~d~IviaCNTas~~~l~~lr~~~~iPVig 113 (285)
T 2jfn_A 73 VAIVTAVQERYPLALAVVACNTASTVSLPALREKFDFPVVG 113 (285)
T ss_dssp HHHHHHHHHHSCCSEEEECCHHHHHHHHHHHHHHCSSCEEC
T ss_pred HHHHHHHHHhCCCCEEEEECccccHHHHHHHHHhCCCCEEe
Confidence 334444555 4899998876666655667777788999996
No 289
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=44.30 E-value=58 Score=33.49 Aligned_cols=79 Identities=10% Similarity=0.092 Sum_probs=57.4
Q ss_pred cEEEEEEEc--CccccchHHHHHHHHhhcceEEEEEEecCCCCCCChhHHHHHHHHHHhCCceEEEEEcChh-hHHHHHH
Q 002364 165 NAVSVIFVD--NEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPS-LGFQVFS 241 (930)
Q Consensus 165 ~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~-~~~~~~~ 241 (930)
++|+++..+ ++|.......+.+++++.|..+.... . . .+...-...++.+.+.+.|.||+..... .....++
T Consensus 4 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~--~-~--~~~~~~~~~i~~~~~~~vdgiIi~~~~~~~~~~~~~ 78 (330)
T 3uug_A 4 GSVGIAMPTKSSARWIDDGNNIVKQLQEAGYKTDLQY--A-D--DDIPNQLSQIENMVTKGVKVLVIASIDGTTLSDVLK 78 (330)
T ss_dssp CEEEEEECCSSSTHHHHHHHHHHHHHHHTTCEEEEEE--C-T--TCHHHHHHHHHHHHHHTCSEEEECCSSGGGGHHHHH
T ss_pred cEEEEEeCCCcchHHHHHHHHHHHHHHHcCCEEEEee--C-C--CCHHHHHHHHHHHHHcCCCEEEEEcCCchhHHHHHH
Confidence 578888754 66778889999999999999877543 1 1 2244555677777777899999876543 4566788
Q ss_pred HHHHcCc
Q 002364 242 VAKYLGM 248 (930)
Q Consensus 242 ~a~~~g~ 248 (930)
++.+.|+
T Consensus 79 ~~~~~gi 85 (330)
T 3uug_A 79 QAGEQGI 85 (330)
T ss_dssp HHHHTTC
T ss_pred HHHHCCC
Confidence 8888775
No 290
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=44.28 E-value=1.5e+02 Score=29.53 Aligned_cols=117 Identities=10% Similarity=0.078 Sum_probs=70.2
Q ss_pred EEEEEeeCCCcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCChHHHHHHHHHHHhc--CcEEEEcCCChhHHH
Q 002364 33 NVGALFTLDSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMET--DIVAIIGPQCSTVAH 110 (930)
Q Consensus 33 ~IG~i~~~s~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~--~v~aiiGp~~s~~~~ 110 (930)
+||++..........-..|++-|+++.+ + + .... +.....+...+.+.+.+++.. ++.||+... ...+.
T Consensus 128 ~I~~i~~~~~~~~~~R~~Gf~~al~~~g----~-~-~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~-d~~A~ 198 (289)
T 3k9c_A 128 NIAHIDGADAPGGADRRAGFLAAMDRHG----L-S-ASAT--VVTGGTTETEGAEGMHTLLEMPTPPTAVVAFN-DRCAT 198 (289)
T ss_dssp SEEEECCTTSTTHHHHHHHHHHHHHHTT----C-G-GGEE--EECCCSSHHHHHHHHHHHHTSSSCCSEEEESS-HHHHH
T ss_pred cEEEEeCCCCccHHHHHHHHHHHHHHCC----C-C-CCcc--EEECCCCHHHHHHHHHHHHcCCCCCCEEEECC-hHHHH
Confidence 5777765443334455678887777642 1 1 1122 234455777888888888875 689999754 44455
Q ss_pred HHHHhhccCC------CcEEecccCCCCCCCCCCCceEeecCCchHHHHHHHHHHH
Q 002364 111 IVSYVSNELQ------VPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVS 160 (930)
Q Consensus 111 ~v~~~~~~~~------iP~is~~a~~~~l~~~~~p~~~r~~p~~~~~~~ai~~~l~ 160 (930)
.+...+.+.+ +.++++.... +.....|-+-.+..+...++...++++.
T Consensus 199 g~~~al~~~g~~vP~di~vig~D~~~--~~~~~~p~lttv~~~~~~~g~~a~~~l~ 252 (289)
T 3k9c_A 199 GVLDLLVRSGRDVPADISVVGYDDSR--LARIPHVQMTTISQDATHMAEAAVDGAL 252 (289)
T ss_dssp HHHHHHHHTTCCTTTTCEEEEEECCT--TTTCTTTCCEEEECCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCceEEEEECCHH--HHhcCCCCcceEecCHHHHHHHHHHHHH
Confidence 5555555543 3477765442 3333335566666777777777777653
No 291
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=44.04 E-value=46 Score=33.55 Aligned_cols=81 Identities=11% Similarity=0.115 Sum_probs=57.2
Q ss_pred CccEEEEEEE--cCccccchHHHHHHHHhhcceEEEEEEecCCCCCCChhHHHHHHHHHHhCCceEEEEEcCh-hhHHHH
Q 002364 163 GWNAVSVIFV--DNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSP-SLGFQV 239 (930)
Q Consensus 163 ~w~~v~ii~~--d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~-~~~~~~ 239 (930)
.-+.|+++.. +++|.......+.+++++.|..+..... . .+.......++.+.+.+.|.||+.... ......
T Consensus 7 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~--~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~ 81 (293)
T 3l6u_A 7 KRNIVGFTIVNDKHEFAQRLINAFKAEAKANKYEALVATS---Q--NSRISEREQILEFVHLKVDAIFITTLDDVYIGSA 81 (293)
T ss_dssp --CEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEEEC---S--SCHHHHHHHHHHHHHTTCSEEEEECSCTTTTHHH
T ss_pred CCcEEEEEEecCCcHHHHHHHHHHHHHHHHcCCEEEEECC---C--CCHHHHHHHHHHHHHcCCCEEEEecCChHHHHHH
Confidence 3467888874 3567778889999999999998775432 1 224555677888888899999987554 334467
Q ss_pred HHHHHHcCc
Q 002364 240 FSVAKYLGM 248 (930)
Q Consensus 240 ~~~a~~~g~ 248 (930)
++++.+.|+
T Consensus 82 ~~~~~~~~i 90 (293)
T 3l6u_A 82 IEEAKKAGI 90 (293)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHHcCC
Confidence 788887775
No 292
>2xxp_A CPS2A; replication, peptidoglycan, LCP, LYTR; HET: DSL PEG; 1.69A {Streptococcus pneumoniae} PDB: 3tep_A* 3tfl_A* 2xxq_A* 3tel_A* 4de8_A*
Probab=43.89 E-value=16 Score=39.23 Aligned_cols=66 Identities=17% Similarity=0.108 Sum_probs=49.8
Q ss_pred CCCCChHHhhhCCCCeEEEeCchHHHHHHHh------hccccccceecCCHHHHHHHHhcCCCCCceEEEEecchhHHHH
Q 002364 680 SPINGIESLRKSDDPIGYQEGSFAEYYLSQE------LNISKSRLVALRTPEDYAKALKDGPGKGGVAAVVDERPYVELF 753 (930)
Q Consensus 680 ~~i~s~~dL~~~~~~v~~~~~s~~~~~l~~~------~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~i~~~~~~~~~ 753 (930)
..|++++||. + +|++.++..+.+.... .+. ..++..|++..+++.+|.+ |+++|++.+..+...+
T Consensus 26 s~i~sl~DLk--g--vgv~~~~~~~~~~~~~~~i~~~~g~-~~~~~~y~~~~~a~~aL~n----G~vDAiv~~~~~~~~l 96 (398)
T 2xxp_A 26 SEIENVTQLT--S--VTAPTGTDNENIQKLLADIKSSQNT-DLTVNQSSSYLAAYKSLIA----GETKAIVLNSVFENII 96 (398)
T ss_dssp CSCCSGGGCS--E--EEECTTTSHHHHHHHHHHHHHHSCC-CCEEEECSSHHHHHHHHHT----TSCSCEEEEHHHHHHH
T ss_pred CCcCCHHHhc--C--eeeECCCCHHHHHHHHHHHHHhhCC-cceEEecCCHHHHHHHHHc----CCCCEEEEchHHHHHH
Confidence 6899999997 5 9999887666554211 121 1357789999999999999 9999999987766554
Q ss_pred H
Q 002364 754 L 754 (930)
Q Consensus 754 ~ 754 (930)
.
T Consensus 97 e 97 (398)
T 2xxp_A 97 E 97 (398)
T ss_dssp H
T ss_pred H
Confidence 3
No 293
>3jzd_A Iron-containing alcohol dehydrogenase; YP_298327.1, putative alcohol dehedrogenase, structural GENO joint center for structural genomics; HET: MSE NAD PG4 P6G PGE; 2.10A {Ralstonia eutropha}
Probab=43.61 E-value=30 Score=36.54 Aligned_cols=97 Identities=19% Similarity=0.122 Sum_probs=63.4
Q ss_pred HHHHHHHHhcCccEEEEEEEcCccccchHHHHHHHHhhcceEEEEEEecCCCCCCChhHHHHHHHHHHhCCceEEEEEcC
Q 002364 153 TAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVS 232 (930)
Q Consensus 153 ~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~ 232 (930)
..+.++++.+|.+++.+|++...++ ..+.+.+.+++.++.+ + ..+.++ .+.+.+...++.+++.++|+||-.+.
T Consensus 25 ~~l~~~l~~~g~~r~liVtd~~~~~--~~~~v~~~L~~~~~~~-f-~~v~~~--p~~~~v~~~~~~~~~~~~D~IIavGG 98 (358)
T 3jzd_A 25 SQVAAEVERLGAKRALVLCTPNQQA--EAERIADLLGPLSAGV-Y-AGAVMH--VPIESARDATARAREAGADCAVAVGG 98 (358)
T ss_dssp GGHHHHHHHTTCSCEEEECCGGGHH--HHHHHHHHHGGGEEEE-E-CCCCTT--CBHHHHHHHHHHHHHHTCSEEEEEES
T ss_pred HHHHHHHHHhCCCeEEEEeCCcHHH--HHHHHHHHhccCCEEE-e-cCCcCC--CCHHHHHHHHHHhhccCCCEEEEeCC
Confidence 3466778889999999998655433 4678888888775432 2 223333 34677888888888889999998766
Q ss_pred hh--hHHHHHHHHHHcCcccCCeEEEEeCc
Q 002364 233 PS--LGFQVFSVAKYLGMMGNGYVWIATDW 260 (930)
Q Consensus 233 ~~--~~~~~~~~a~~~g~~~~~~~~i~~~~ 260 (930)
+. +++.++... .+ ..++-|-|..
T Consensus 99 GsviD~aK~iA~~--~~---~p~i~IPTT~ 123 (358)
T 3jzd_A 99 GSTTGLGKAIALE--TG---MPIVAIPTTY 123 (358)
T ss_dssp HHHHHHHHHHHHH--HC---CCEEEEECSS
T ss_pred cHHHHHHHHHHhc--cC---CCEEEEeCCc
Confidence 53 455555432 23 3455565543
No 294
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=43.56 E-value=81 Score=31.59 Aligned_cols=84 Identities=5% Similarity=-0.092 Sum_probs=52.4
Q ss_pred HHhcCccEEEEEEEc----CccccchHHHHHHHHhhcceEEEEEEecCCCCCCChhHHHHHHHHHHhCCceEEEEEcChh
Q 002364 159 VSYYGWNAVSVIFVD----NEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPS 234 (930)
Q Consensus 159 l~~~~w~~v~ii~~d----~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~ 234 (930)
++.-.-.+|+++..+ ++|.......+.+++++.|..+.... .. .+.......++.+.+.+.|.||+.....
T Consensus 14 L~~~~~~~Ig~i~~~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~---~~--~~~~~~~~~~~~l~~~~vdgii~~~~~~ 88 (296)
T 3brq_A 14 LSAKSTQTLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQLLLAD---GK--HSAEEERQAIQYLLDLRCDAIMIYPRFL 88 (296)
T ss_dssp -----CCEEEEEECGGGCC--CHHHHHHHHHHHHHHTTCEEEEEC---CT--TSHHHHHHHHHHHHHTTCSEEEEECSSS
T ss_pred hhcCCCceEEEEeCCcccCCchHHHHHHHHHHHHHHCCCEEEEEe---CC--CCHHHHHHHHHHHHhcCCCEEEEecCCC
Confidence 333344688888754 46777888999999999998876432 12 2244555677777778899999875532
Q ss_pred hHHHHHHHHHH-cCc
Q 002364 235 LGFQVFSVAKY-LGM 248 (930)
Q Consensus 235 ~~~~~~~~a~~-~g~ 248 (930)
.. ..++.+.+ .|.
T Consensus 89 ~~-~~~~~l~~~~~i 102 (296)
T 3brq_A 89 SV-DEIDDIIDAHSQ 102 (296)
T ss_dssp CH-HHHHHHHHTCSS
T ss_pred Ch-HHHHHHHhcCCC
Confidence 22 34566666 564
No 295
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=43.43 E-value=62 Score=32.52 Aligned_cols=79 Identities=10% Similarity=0.053 Sum_probs=57.5
Q ss_pred cEEEEEEE--cCccccchHHHHHHHHhhcceEEEEEEecCCCCCCChhHHHHHHHHHHhCCceEEEEEcChh----hHHH
Q 002364 165 NAVSVIFV--DNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPS----LGFQ 238 (930)
Q Consensus 165 ~~v~ii~~--d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~----~~~~ 238 (930)
+.|+++.. +++|.......+.+++++.|..+..... . .+...-...++.+.+.+.|.||+..... ....
T Consensus 16 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~----~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~ 90 (298)
T 3tb6_A 16 KTIGVLTTYISDYIFPSIIRGIESYLSEQGYSMLLTST-N----NNPDNERRGLENLLSQHIDGLIVEPTKSALQTPNIG 90 (298)
T ss_dssp CEEEEEESCSSSTTHHHHHHHHHHHHHHTTCEEEEEEC-T----TCHHHHHHHHHHHHHTCCSEEEECCSSTTSCCTTHH
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeC-C----CChHHHHHHHHHHHHCCCCEEEEecccccccCCcHH
Confidence 78999885 3567788899999999999998775432 1 1245556677888888999999875432 3446
Q ss_pred HHHHHHHcCc
Q 002364 239 VFSVAKYLGM 248 (930)
Q Consensus 239 ~~~~a~~~g~ 248 (930)
.++.+.+.|+
T Consensus 91 ~~~~~~~~~i 100 (298)
T 3tb6_A 91 YYLNLEKNGI 100 (298)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHhcCC
Confidence 7777877775
No 296
>3p6l_A Sugar phosphate isomerase/epimerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG; HET: CIT; 1.85A {Parabacteroides distasonis}
Probab=43.21 E-value=1.1e+02 Score=30.13 Aligned_cols=94 Identities=10% Similarity=-0.007 Sum_probs=67.2
Q ss_pred HHHHHHHHHhcCccEEEEEEEc------------CccccchHHHHHHHHhhcceEEEEEEecCCCCCCChhHHHHHHHHH
Q 002364 152 MTAVAEMVSYYGWNAVSVIFVD------------NEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKV 219 (930)
Q Consensus 152 ~~ai~~~l~~~~w~~v~ii~~d------------~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l 219 (930)
....++.++..|.+.|=+...+ ........+.+++.+++.|+++........ ....++...++..
T Consensus 24 ~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~~~~~~---~~~~~~~~~i~~A 100 (262)
T 3p6l_A 24 LTEALDKTQELGLKYIEIYPGHKLGGKWGDKVFDFNLDAQTQKEIKELAASKGIKIVGTGVYVA---EKSSDWEKMFKFA 100 (262)
T ss_dssp HHHHHHHHHHTTCCEEEECTTEECCGGGTTCEESTTCCHHHHHHHHHHHHHTTCEEEEEEEECC---SSTTHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEeecCCcccccccccccccccCCHHHHHHHHHHHHHcCCeEEEEeccCC---ccHHHHHHHHHHH
Confidence 3556667788888888775321 112334578999999999999876544332 2366788888888
Q ss_pred HhCCceEEEEEcChhhHHHHHHHHHHcCc
Q 002364 220 ALMESRVIVLHVSPSLGFQVFSVAKYLGM 248 (930)
Q Consensus 220 ~~~~~~viil~~~~~~~~~~~~~a~~~g~ 248 (930)
+.-+++.|+++...+....+...|.+.|+
T Consensus 101 ~~lGa~~v~~~~~~~~~~~l~~~a~~~gv 129 (262)
T 3p6l_A 101 KAMDLEFITCEPALSDWDLVEKLSKQYNI 129 (262)
T ss_dssp HHTTCSEEEECCCGGGHHHHHHHHHHHTC
T ss_pred HHcCCCEEEecCCHHHHHHHHHHHHHhCC
Confidence 88899999998766666667777777665
No 297
>3qvl_A Putative hydantoin racemase; isomerase; HET: 5HY; 1.82A {Klebsiella pneumoniae subsp} PDB: 3qvk_A* 3qvj_A
Probab=42.93 E-value=2.5e+02 Score=27.47 Aligned_cols=84 Identities=13% Similarity=0.071 Sum_probs=47.8
Q ss_pred EEEEEEeeCCCcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCC-------ChHHHH----HHHHHHHhcCcEEE
Q 002364 32 VNVGALFTLDSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNC-------SGFIGM----VEALRFMETDIVAI 100 (930)
Q Consensus 32 i~IG~i~~~s~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~l~~~D~~~-------~~~~a~----~~a~~li~~~v~ai 100 (930)
.+|.+|-|-++ ..+...+.-+++.+.. ||.++.....+..- +...+. ..+.++..+++.+|
T Consensus 2 mrilvINPnts---~~~T~~i~~~~~~~~~-----p~~~i~~~t~~~gp~~i~~~~d~~~a~~~l~~~~~~l~~~g~d~i 73 (245)
T 3qvl_A 2 VRIQVINPNTS---LAMTETIGAAARAVAA-----PGTEILAVCPRAGVPSIEGHFDEAIAAVGVLEQIRAGREQGVDGH 73 (245)
T ss_dssp EEEEEECSSCC---HHHHHHHHHHHHHHCC-----TTEEEEEECCSSSCSSCCSHHHHHHHHHHHHHHHHHHHHHTCSEE
T ss_pred CEEEEEeCCCC---HHHHHHHHHHHHHhcC-----CCCEEEEEeCCCCchhhcChhHHHHHHHHHHHHHHHHHHCCCCEE
Confidence 57888888775 3445566666665532 57788876665442 222222 22223334488888
Q ss_pred EcCCChhHHHHHHHhhccCCCcEEe
Q 002364 101 IGPQCSTVAHIVSYVSNELQVPLLS 125 (930)
Q Consensus 101 iGp~~s~~~~~v~~~~~~~~iP~is 125 (930)
+=+-.+... +..+-+..++|+|.
T Consensus 74 viaCnt~~~--l~~lr~~~~iPvig 96 (245)
T 3qvl_A 74 VIASFGDPG--LLAARELAQGPVIG 96 (245)
T ss_dssp EEC-CCCTT--HHHHHHHCSSCEEE
T ss_pred EEeCCChhH--HHHHHHHcCCCEEC
Confidence 755444443 23444567899885
No 298
>1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel protein, salt bridges, electrostatic interactions, lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1j5t_A
Probab=42.50 E-value=88 Score=30.94 Aligned_cols=86 Identities=14% Similarity=0.091 Sum_probs=58.1
Q ss_pred HHHHHHHHhcCccEEEEEEEcCccccchHHHHHHHHhhcceEEEEEEecCCCCCCChhHHHHHHHHHHhCCceEEEEEcC
Q 002364 153 TAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVS 232 (930)
Q Consensus 153 ~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~ 232 (930)
..+|+..... -.-+.++ +|..|..+..+.++..-+..++.|.....+ .+.+ ++.+.+..++|+|.+.+.
T Consensus 64 ~~iA~~y~~~-A~~IsVl-Td~~~F~gs~~dL~~ir~~v~lPvLrKDfi-------~~~~--qi~ea~~~GAD~ilLi~a 132 (251)
T 1i4n_A 64 EDFIRMYDEL-ADAISIL-TEKHYFKGDPAFVRAARNLTCRPILAKDFY-------IDTV--QVKLASSVGADAILIIAR 132 (251)
T ss_dssp HHHHHHHHHH-CSEEEEE-CCCSSSCCCTHHHHHHHTTCCSCEEEECCC-------CSTH--HHHHHHHTTCSEEEEEGG
T ss_pred HHHHHHHHHh-CCceEEE-ecccccCCCHHHHHHHHHhCCCCEEEeeCC-------CCHH--HHHHHHHcCCCEEEEecc
Confidence 3444444433 4555555 477777788888888766667776644433 2234 466688899999999766
Q ss_pred h---hhHHHHHHHHHHcCcc
Q 002364 233 P---SLGFQVFSVAKYLGMM 249 (930)
Q Consensus 233 ~---~~~~~~~~~a~~~g~~ 249 (930)
. .+...+++.|+++||.
T Consensus 133 ~l~~~~l~~l~~~a~~lGl~ 152 (251)
T 1i4n_A 133 ILTAEQIKEIYEAAEELGMD 152 (251)
T ss_dssp GSCHHHHHHHHHHHHTTTCE
T ss_pred cCCHHHHHHHHHHHHHcCCe
Confidence 5 5678899999999874
No 299
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=42.46 E-value=29 Score=34.58 Aligned_cols=79 Identities=10% Similarity=0.020 Sum_probs=56.0
Q ss_pred cEEEEEEEc--CccccchHHHHHHHHhhcceEEEEEEecCCCCCCChhHHHHHHHHHHhCCceEEEEEcChhhHHHHHHH
Q 002364 165 NAVSVIFVD--NEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSV 242 (930)
Q Consensus 165 ~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~~~~~ 242 (930)
+.++++..+ ++|.......+.+++++.|..+..... . .+.......++.+.+.+.|.||+..........++.
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~----~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~ 77 (272)
T 3o74_A 3 RTLGFILPDLENPSYARIAKQLEQGARARGYQLLIASS-D----DQPDSERQLQQLFRARRCDALFVASCLPPEDDSYRE 77 (272)
T ss_dssp CEEEEEESCTTCHHHHHHHHHHHHHHHHTTCEEEEEEC-T----TCHHHHHHHHHHHHHTTCSEEEECCCCCSSCCHHHH
T ss_pred eEEEEEeCCCcChhHHHHHHHHHHHHHHCCCEEEEEeC-C----CCHHHHHHHHHHHHHcCCCEEEEecCccccHHHHHH
Confidence 567888754 567778889999999999998875432 1 224556667788888899999987654333456677
Q ss_pred HHHcCc
Q 002364 243 AKYLGM 248 (930)
Q Consensus 243 a~~~g~ 248 (930)
+.+.|+
T Consensus 78 ~~~~~i 83 (272)
T 3o74_A 78 LQDKGL 83 (272)
T ss_dssp HHHTTC
T ss_pred HHHcCC
Confidence 777664
No 300
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=42.12 E-value=42 Score=34.01 Aligned_cols=81 Identities=7% Similarity=0.016 Sum_probs=56.7
Q ss_pred cEEEEEEEc--CccccchHHHHHHHHhhcceEEEEEEecCCCCCCChhHHHHHHHHHHhCCceEEEEEcCh-hhHHHHHH
Q 002364 165 NAVSVIFVD--NEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSP-SLGFQVFS 241 (930)
Q Consensus 165 ~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~-~~~~~~~~ 241 (930)
.+++++..+ ++|.......+.+++++.|..+.....-... +.......++.+.+.+.|.||+.... ......++
T Consensus 4 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~---~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~~ 80 (297)
T 3rot_A 4 DKYYLITHGSQDPYWTSLFQGAKKAAEELKVDLQILAPPGAN---DVPKQVQFIESALATYPSGIATTIPSDTAFSKSLQ 80 (297)
T ss_dssp CEEEEECSCCCSHHHHHHHHHHHHHHHHHTCEEEEECCSSSC---CHHHHHHHHHHHHHTCCSEEEECCCCSSTTHHHHH
T ss_pred EEEEEEecCCCCchHHHHHHHHHHHHHHhCcEEEEECCCCcC---CHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHH
Confidence 467777643 6778888999999999999988754311101 24555677888888899999986543 43456778
Q ss_pred HHHHcCc
Q 002364 242 VAKYLGM 248 (930)
Q Consensus 242 ~a~~~g~ 248 (930)
++.+.|+
T Consensus 81 ~~~~~gi 87 (297)
T 3rot_A 81 RANKLNI 87 (297)
T ss_dssp HHHHHTC
T ss_pred HHHHCCC
Confidence 8887775
No 301
>2hxw_A Major antigenic peptide PEB3; periplasmic binding protein, N-glycosylation, structural genomics; HET: FLC; 1.60A {Campylobacter jejuni} PDB: 3fjm_A 3fjg_A 3fir_A* 3fj7_A*
Probab=41.98 E-value=78 Score=30.54 Aligned_cols=40 Identities=10% Similarity=-0.041 Sum_probs=28.1
Q ss_pred HHHHHHHHHhCCCcccEEEEecCCCCCCCCHHHHHHHHHcCcccEEEeee
Q 002364 495 IDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGDI 544 (930)
Q Consensus 495 ~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~D~~~~~~ 544 (930)
-++++.+.++.|.++++ .. ++-..++.++. +.+|+++.+-
T Consensus 16 ~~~~~~F~~~~gi~V~~--~~-------~~s~~l~~~l~-~~~Dv~~~~~ 55 (237)
T 2hxw_A 16 KDIANKYSEKTGVKVNV--NF-------GPQATWFEKAK-KDADILFGAS 55 (237)
T ss_dssp HHHHHHHHHHHCCCEEE--EE-------SSHHHHHHHHH-HHCSEEEESS
T ss_pred HHHHHHHHHHhCceEEE--Ee-------CChHHHHHHhc-cCCCEEEeCC
Confidence 36777787777866444 33 44667888888 8999987653
No 302
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=41.90 E-value=16 Score=36.94 Aligned_cols=54 Identities=17% Similarity=0.234 Sum_probs=46.4
Q ss_pred cchhhhHHHHHHhhhcCc--CcccccchhhhHHHHHHHHHhhhhhhhhhhheeeec
Q 002364 622 QVITILWFSLSTLFFAHK--ENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTV 675 (930)
Q Consensus 622 ~~~~~~~~~~~~l~~~~~--~~~~s~s~R~~~~~w~~~~lil~~~Yta~L~s~Lt~ 675 (930)
++.+++||++.++..-|- -.|.+..+|++.+++.++++.+...+.+.+...+..
T Consensus 93 ~~~~a~yf~~~t~tTvGyGd~~P~T~~Gk~f~~~~~l~Gi~~~~~~~~~~~~~l~~ 148 (280)
T 3ukm_A 93 DFTSALFFASTVLSTTGYGHTVPLSDGGKAFCIIYSVIGIPFTLLFLTAVVQRITV 148 (280)
T ss_dssp SHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhcchhheeeeeeccccCCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578899999999987764 489999999999999999999999999888766544
No 303
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=41.69 E-value=71 Score=32.00 Aligned_cols=79 Identities=8% Similarity=0.048 Sum_probs=54.1
Q ss_pred cEEEEEEE--cCccccchHHHHHHHHhhcceEEEEEEecCCCCCCChhHHHHHHHHHHhCCceEEEEEcChh-hHHHHHH
Q 002364 165 NAVSVIFV--DNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPS-LGFQVFS 241 (930)
Q Consensus 165 ~~v~ii~~--d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~-~~~~~~~ 241 (930)
++++++.. +++|.......+.+++++.|..+..... . .+.......++.+.+.+.|.||+..... .....++
T Consensus 3 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~---~--~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~~ 77 (290)
T 2fn9_A 3 GKMAIVISTLNNPWFVVLAETAKQRAEQLGYEATIFDS---Q--NDTAKESAHFDAIIAAGYDAIIFNPTDADGSIANVK 77 (290)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHTTCEEEEEEC---T--TCHHHHHHHHHHHHHTTCSEEEECCSCTTTTHHHHH
T ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEeCC---C--CCHHHHHHHHHHHHHcCCCEEEEecCChHHHHHHHH
Confidence 46788774 4667788889999999999998765321 1 2244455667777778899999875433 3335677
Q ss_pred HHHHcCc
Q 002364 242 VAKYLGM 248 (930)
Q Consensus 242 ~a~~~g~ 248 (930)
.+.+.|.
T Consensus 78 ~~~~~~i 84 (290)
T 2fn9_A 78 RAKEAGI 84 (290)
T ss_dssp HHHHTTC
T ss_pred HHHHCCC
Confidence 7776664
No 304
>1b73_A Glutamate racemase; isomerase; 2.30A {Aquifex pyrophilus} SCOP: c.78.2.1 c.78.2.1 PDB: 1b74_A*
Probab=41.60 E-value=60 Score=32.23 Aligned_cols=121 Identities=16% Similarity=0.095 Sum_probs=66.0
Q ss_pred HHHHHHHHHhcCcEEEEcCCChhHHHHHHHhhccCCCcEEecccCCCCCCCCCCCceEeecCCchHHHHHHHHHHHhcCc
Q 002364 85 GMVEALRFMETDIVAIIGPQCSTVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGW 164 (930)
Q Consensus 85 a~~~a~~li~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~a~~~~l~~~~~p~~~r~~p~~~~~~~ai~~~l~~~~w 164 (930)
..+.+..|.+.++.+|+-+-++..+..+..+-+..++|+|... -.++...++..+-
T Consensus 51 ~~~~~~~L~~~g~d~iviaCnTa~~~~~~~lr~~~~iPvigi~------------------------e~~~~~A~~~~~~ 106 (254)
T 1b73_A 51 SLECAGFLKDKGVDIIVVACNTASAYALERLKKEINVPVFGVI------------------------EPGVKEALKKSRN 106 (254)
T ss_dssp HHHHHHHHHTTTCSEEEECCHHHHTTSHHHHHHHSSSCEEESH------------------------HHHHHHHHHHCSS
T ss_pred HHHHHHHHHHCCCCEEEEeCchhhHHHHHHHHHhCCCCEEeee------------------------HHHHHHHHHccCC
Confidence 3445555556689999876666654445666667789998620 0112222334466
Q ss_pred cEEEEEEEcCccccchHHHHHHHHhhcceEEEEEEecCCCC---CC---C----hhHHHHHHHHHHhCCceEEEEEcChh
Q 002364 165 NAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPES---GV---N----TGYVMDLLVKVALMESRVIVLHVSPS 234 (930)
Q Consensus 165 ~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~---~~---~----~~~~~~~l~~l~~~~~~viil~~~~~ 234 (930)
++|+++.+....-.. ..++.+++.|.++.... .+.-. .. + ...+...++++.+. +|+||+.|..-
T Consensus 107 ~rigVlaT~~T~~~~---~y~~~l~~~g~~v~~~~-~~~~v~~ie~g~~~~~~~~~~l~~~~~~l~~~-~d~IILGCT~~ 181 (254)
T 1b73_A 107 KKIGVIGTPATVKSG---AYQRKLEEGGADVFAKA-CPLFAPLAEEGLLEGEITRKVVEHYLKEFKGK-IDTLILGCTHY 181 (254)
T ss_dssp CEEEEEECHHHHHHC---HHHHHHHTTSCEEEEEE-CCCCTTTSCGGGGSGGGHHHHHHHHSTTTTTT-CSEEEECCCCT
T ss_pred CEEEEEEChHHhhhH---HHHHHHHcCCCEEEecC-CHHHHHHHHCCCCCCHHHHHHHHHHHHHHHhc-CCEEEECccCh
Confidence 899999865432222 23455556787765221 11110 00 1 11233344444445 99999977753
No 305
>4euo_A ABC transporter, substrate binding protein (polya; class D of PBP, GABA-binding, transport protein; 1.28A {Agrobacterium tumefaciens} PDB: 4eq7_A
Probab=41.08 E-value=3e+02 Score=27.81 Aligned_cols=83 Identities=5% Similarity=-0.115 Sum_probs=46.5
Q ss_pred ceecCCHHHHHHHHhcCCCCCceEEEEecchhHHHHHhcCccEEEeCccccccceeeeeCCCCcchHHHHHHHHhhhhcc
Q 002364 718 LVALRTPEDYAKALKDGPGKGGVAAVVDERPYVELFLSSQCSFRIVGQEFTKSGWGFAFPRDSPLAVDLSSAILELAENG 797 (930)
Q Consensus 718 ~~~~~~~~~~~~~l~~~~~~g~~~a~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~k~spl~~~i~~~i~~l~e~G 797 (930)
+..+.+..+..+.+.+ |++++.+.-............++.++-+-......+++++|+++-.+.--+.|..|.+..
T Consensus 176 ~~~~~~~~~~~~~~~~----G~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~k~s~~~e~A~~fi~fl~s~e 251 (320)
T 4euo_A 176 IIWWSGGAQSQQLIAS----AEAPFGSVWNGRMTALEQSGVKVETSWAQNITAADSLVVPKGTKNKDAAMKFIALATSAQ 251 (320)
T ss_dssp EEEECSHHHHHHHHHT----TSSCEEEEEHHHHHHHHHTTCCCEEEEEEEEEEEEEEECBTTCSCHHHHHHHHHHHTSHH
T ss_pred eeEeCCCchHHHHHHc----CCEEEEEeecHHHHHHHhCCCCeEEEecCceeecceEEEECCCCCHHHHHHHHHHHhCHH
Confidence 3445666788888988 888776654433333333332333222211222347889999997666666666665444
Q ss_pred chHHHHHH
Q 002364 798 DLQRIHDK 805 (930)
Q Consensus 798 ~~~~~~~~ 805 (930)
.+....+
T Consensus 252 -~q~~~~~ 258 (320)
T 4euo_A 252 -AQADMAT 258 (320)
T ss_dssp -HHHHHHH
T ss_pred -HHHHHHH
Confidence 3433333
No 306
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=41.06 E-value=1.6e+02 Score=25.85 Aligned_cols=85 Identities=5% Similarity=0.010 Sum_probs=53.7
Q ss_pred EEEEEEEcCccccchHHHHHHHHhhcceEEEEEEecCCCCCCChhHHHHHHHHHHhCCceEEEEEcChh----hHHHHHH
Q 002364 166 AVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPS----LGFQVFS 241 (930)
Q Consensus 166 ~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~----~~~~~~~ 241 (930)
+|.+.....+.-.-+..-+...++..|.++.+..... .....++.+++.++++|.+++... ....+++
T Consensus 5 ~vvla~~~~d~HdiG~~~v~~~l~~~G~~Vi~lG~~~--------p~e~~v~~a~~~~~d~v~lS~~~~~~~~~~~~~i~ 76 (137)
T 1ccw_A 5 TIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNIGVLS--------PQELFIKAAIETKADAILVSSLYGQGEIDCKGLRQ 76 (137)
T ss_dssp EEEEEEETTCCCCHHHHHHHHHHHHTTCEEEEEEEEE--------CHHHHHHHHHHHTCSEEEEEECSSTHHHHHTTHHH
T ss_pred EEEEEeCCCchhHHHHHHHHHHHHHCCCEEEECCCCC--------CHHHHHHHHHhcCCCEEEEEecCcCcHHHHHHHHH
Confidence 4555444555444556778889999999998654321 123455666667899999986543 3445677
Q ss_pred HHHHcCcccCCeEEEEeC
Q 002364 242 VAKYLGMMGNGYVWIATD 259 (930)
Q Consensus 242 ~a~~~g~~~~~~~~i~~~ 259 (930)
+.++.|.. .-.+|+++.
T Consensus 77 ~l~~~g~~-~i~v~vGG~ 93 (137)
T 1ccw_A 77 KCDEAGLE-GILLYVGGN 93 (137)
T ss_dssp HHHHTTCT-TCEEEEEES
T ss_pred HHHhcCCC-CCEEEEECC
Confidence 78777753 234566653
No 307
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=41.05 E-value=77 Score=33.02 Aligned_cols=65 Identities=5% Similarity=-0.072 Sum_probs=43.8
Q ss_pred CccEEEEEEEc--CccccchHHHHHHHHhhcceEEEEEEecCCCCCCChhHHHHHHHHHHhCCceEEEEEc
Q 002364 163 GWNAVSVIFVD--NEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHV 231 (930)
Q Consensus 163 ~w~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~ 231 (930)
.-..++++..+ ++|.......+.+.+++.|..+..... . . .........++.+...+.|.||+..
T Consensus 60 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~-~--~~~~~~~~~l~~l~~~~vdGiIi~~ 126 (349)
T 1jye_A 60 QSLLIGVATSSLALHAPSQIVAAILSRADQLGASVVVSMV-E-R--SGVEACKTAVHNLLAQRVSGLIINY 126 (349)
T ss_dssp --CEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEEC-C-S--SSHHHHHHHHHHHHTTTCSCEEEES
T ss_pred CCCEEEEEeCCCCcccHHHHHHHHHHHHHHcCCEEEEEeC-C-C--CcHHHHHHHHHHHHHCCCCEEEEec
Confidence 34678888754 456677788999999999988765321 1 1 1123445667777778899999874
No 308
>3ojc_A Putative aspartate/glutamate racemase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha beta; 1.75A {Yersinia pestis}
Probab=40.97 E-value=21 Score=35.06 Aligned_cols=81 Identities=12% Similarity=0.166 Sum_probs=45.4
Q ss_pred HHHHHHHhcCcEEEEcCCChhHHHHHHHhhccCCCcEEecccCCCCCCCCCCCceEeecCCchHHHHHHHHHHHhcCccE
Q 002364 87 VEALRFMETDIVAIIGPQCSTVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNA 166 (930)
Q Consensus 87 ~~a~~li~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~a~~~~l~~~~~p~~~r~~p~~~~~~~ai~~~l~~~~w~~ 166 (930)
+.+..|.+.++.+|+-+-++... .+..+-+..++|+|+. .++.++.+...+-++
T Consensus 67 ~~~~~L~~~g~~~iviaCNTa~~-~~~~l~~~~~iPvi~i-------------------------~~~~~~~a~~~~~~r 120 (231)
T 3ojc_A 67 NAAISLKHAGAEVIVVCTNTMHK-VADDIEAACGLPLLHI-------------------------ADATAVQIKQQGIDK 120 (231)
T ss_dssp HHHHHHHHHTCCEEEECSSGGGG-GHHHHHHHHCSCBCCH-------------------------HHHHHHHHHHTTCCE
T ss_pred HHHHHHHhcCCCEEEEeCCchHH-HHHHHHHhCCCCEecc-------------------------HHHHHHHHHHcCCCE
Confidence 33444545589988876666443 2344555568888742 244444444456789
Q ss_pred EEEEEEcCccccchHHHHHHHHhhc-ceEEE
Q 002364 167 VSVIFVDNEYGRNGVSALNDKLAER-RCRIS 196 (930)
Q Consensus 167 v~ii~~d~~~g~~~~~~l~~~l~~~-g~~v~ 196 (930)
|+++.+....-.+ .+++.+++. |+++.
T Consensus 121 VgvLaT~~T~~s~---~y~~~l~~~~g~~v~ 148 (231)
T 3ojc_A 121 IGLLGTRYTMEQG---FYRGRLTEKHGIEVI 148 (231)
T ss_dssp EEEESCHHHHHST---TTHHHHHHTTCCEEE
T ss_pred EEEEcCHHHhhch---HHHHHHHhcCCCEEE
Confidence 9998754321111 223445555 77764
No 309
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=40.20 E-value=1.1e+02 Score=28.06 Aligned_cols=67 Identities=6% Similarity=0.033 Sum_probs=48.4
Q ss_pred cCccEEEEEEEcCcccc---chHHHHHHHHhhcceEEEEEEecCCCCCCChhHHHHHHHHHHh-CCceEEEEEcC
Q 002364 162 YGWNAVSVIFVDNEYGR---NGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVAL-MESRVIVLHVS 232 (930)
Q Consensus 162 ~~w~~v~ii~~d~~~g~---~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~-~~~~viil~~~ 232 (930)
+.-.++++|...|+-|+ .....+.+.+++.|.++.....++.+ .+.+...+++..+ .++|+||+.+.
T Consensus 11 ~~~~rv~Ii~tGdElg~i~Dsn~~~l~~~L~~~G~~v~~~~iv~Dd----~~~i~~~l~~~~~~~~~DlVittGG 81 (169)
T 1y5e_A 11 PKEVRCKIVTISDTRTEETDKSGQLLHELLKEAGHKVTSYEIVKDD----KESIQQAVLAGYHKEDVDVVLTNGG 81 (169)
T ss_dssp -CCCEEEEEEECSSCCTTTCHHHHHHHHHHHHHTCEEEEEEEECSS----HHHHHHHHHHHHTCTTCSEEEEECC
T ss_pred ccCCEEEEEEEcCccCeeccChHHHHHHHHHHCCCeEeEEEEeCCC----HHHHHHHHHHHHhcCCCCEEEEcCC
Confidence 34468899887665543 22467888899999998877777644 7788888888765 36899998754
No 310
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=40.16 E-value=42 Score=34.22 Aligned_cols=86 Identities=8% Similarity=0.008 Sum_probs=55.0
Q ss_pred HHHHhcCccEEEEEEEc-------CccccchHHHHHHHHhhcceEEEEEEecCCCCCCChhHHHHHHHHHHhCCceEEEE
Q 002364 157 EMVSYYGWNAVSVIFVD-------NEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVL 229 (930)
Q Consensus 157 ~~l~~~~w~~v~ii~~d-------~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil 229 (930)
+-++.-.-+.|+++..+ +.|.......+.+++++.|..+... ... .........++.+.+.+.|.||+
T Consensus 15 r~L~~~~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~---~~~--~~~~~~~~~~~~l~~~~vdgiIi 89 (305)
T 3huu_A 15 RTLITNKTLTIGLIQKSSAPEIRQNPFNSDVLNGINQACNVRGYSTRMT---VSE--NSGDLYHEVKTMIQSKSVDGFIL 89 (305)
T ss_dssp ------CCCEEEEECSCCSHHHHTSHHHHHHHHHHHHHHHHHTCEEEEC---CCS--SHHHHHHHHHHHHHTTCCSEEEE
T ss_pred HHhhhCCCCEEEEEeCCCccccccCcHHHHHHHHHHHHHHHCCCEEEEE---eCC--CChHHHHHHHHHHHhCCCCEEEE
Confidence 33444455788888755 5577778899999999999887642 222 12334456677788889999998
Q ss_pred EcChhhHHHHHHHHHHcCc
Q 002364 230 HVSPSLGFQVFSVAKYLGM 248 (930)
Q Consensus 230 ~~~~~~~~~~~~~a~~~g~ 248 (930)
...... ...++.+.+.|+
T Consensus 90 ~~~~~~-~~~~~~l~~~~i 107 (305)
T 3huu_A 90 LYSLKD-DPIEHLLNEFKV 107 (305)
T ss_dssp SSCBTT-CHHHHHHHHTTC
T ss_pred eCCcCC-cHHHHHHHHcCC
Confidence 754432 256667777664
No 311
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0
Probab=39.70 E-value=1.7e+02 Score=29.23 Aligned_cols=87 Identities=16% Similarity=0.033 Sum_probs=60.5
Q ss_pred HHHHHHHHhcCccEEEEEEEcCccccchHHHHHHHHhhcceEEEEEEecCCCCCCChhHHHHHHHHHHhCCceEEEEEcC
Q 002364 153 TAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVS 232 (930)
Q Consensus 153 ~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~ 232 (930)
..+|+.....|-..+.++. |..|..+..+.++..-+..++.|.....+- +.+ ++.+.+..++|.|++.+.
T Consensus 82 ~~~A~~y~~~GA~~IsVlt-d~~~f~Gs~~~L~~ir~~v~lPVl~Kdfi~-------d~~--qi~ea~~~GAD~VlLi~a 151 (272)
T 3tsm_A 82 PALAKAYEEGGAACLSVLT-DTPSFQGAPEFLTAARQACSLPALRKDFLF-------DPY--QVYEARSWGADCILIIMA 151 (272)
T ss_dssp HHHHHHHHHTTCSEEEEEC-CSTTTCCCHHHHHHHHHTSSSCEEEESCCC-------STH--HHHHHHHTTCSEEEEETT
T ss_pred HHHHHHHHHCCCCEEEEec-cccccCCCHHHHHHHHHhcCCCEEECCccC-------CHH--HHHHHHHcCCCEEEEccc
Confidence 5567777788889998887 444555667777766666677765443221 112 466778899999999754
Q ss_pred ---hhhHHHHHHHHHHcCcc
Q 002364 233 ---PSLGFQVFSVAKYLGMM 249 (930)
Q Consensus 233 ---~~~~~~~~~~a~~~g~~ 249 (930)
..+...++..++++||.
T Consensus 152 ~L~~~~l~~l~~~a~~lGl~ 171 (272)
T 3tsm_A 152 SVDDDLAKELEDTAFALGMD 171 (272)
T ss_dssp TSCHHHHHHHHHHHHHTTCE
T ss_pred ccCHHHHHHHHHHHHHcCCe
Confidence 45677899999999973
No 312
>2jfq_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: DGL; 2.15A {Staphylococcus aureus}
Probab=39.63 E-value=1.9e+02 Score=29.16 Aligned_cols=40 Identities=20% Similarity=0.321 Sum_probs=27.9
Q ss_pred HHHHHHHHhcCcEEEEcCCChhHHHHHHHhhccCCCcEEe
Q 002364 86 MVEALRFMETDIVAIIGPQCSTVAHIVSYVSNELQVPLLS 125 (930)
Q Consensus 86 ~~~a~~li~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is 125 (930)
.+.+..|.+.++.+|+-+-++..+..+..+-+..++|+|.
T Consensus 74 ~~~~~~L~~~g~d~IVIaCNTas~~~l~~lr~~~~iPVig 113 (286)
T 2jfq_A 74 VEIARKLMEFDIKMLVIACNTATAVALEYLQKTLSISVIG 113 (286)
T ss_dssp HHHHHHHTTSCCSEEEECCHHHHHHHHHHHHHHCSSEEEE
T ss_pred HHHHHHHHHCCCCEEEEeCCchhHHHHHHHHHhCCCCEEe
Confidence 3444445555899998876666655666676778999996
No 313
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=39.61 E-value=67 Score=33.29 Aligned_cols=84 Identities=8% Similarity=0.035 Sum_probs=54.9
Q ss_pred HHhcCccEEEEEEE--cCccccchHHHHHHHHhhcceEEEEEEecCCCCCCChhHHHHHHHHHHhCCceEEEEEcChhhH
Q 002364 159 VSYYGWNAVSVIFV--DNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLG 236 (930)
Q Consensus 159 l~~~~w~~v~ii~~--d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~ 236 (930)
++.-.-+.++++.. +++|.......+.+++.+.|..+..... . .+.......++.+.+.+.|.||+.......
T Consensus 57 l~~~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~----~~~~~~~~~~~~l~~~~vdGiIi~~~~~~~ 131 (339)
T 3h5o_A 57 LASAKSRTVLVLIPSLANTVFLETLTGIETVLDAAGYQMLIGNS-H----YDAGQELQLLRAYLQHRPDGVLITGLSHAE 131 (339)
T ss_dssp ------CEEEEEESCSTTCTTHHHHHHHHHHHHHTTCEEEEEEC-T----TCHHHHHHHHHHHHTTCCSEEEEECSCCCT
T ss_pred hhcCCCCEEEEEeCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeC-C----CChHHHHHHHHHHHcCCCCEEEEeCCCCCH
Confidence 33334467888874 4667788899999999999998764321 1 224555667788888899999987644322
Q ss_pred HHHHHHHHHcCc
Q 002364 237 FQVFSVAKYLGM 248 (930)
Q Consensus 237 ~~~~~~a~~~g~ 248 (930)
..++.+.+.|.
T Consensus 132 -~~~~~l~~~~i 142 (339)
T 3h5o_A 132 -PFERILSQHAL 142 (339)
T ss_dssp -THHHHHHHTTC
T ss_pred -HHHHHHhcCCC
Confidence 45666666664
No 314
>3r7f_A Aspartate carbamoyltransferase; aspartate transcarbamoylase, carbamoyl phosphate, transferas catalytic cycle; 2.10A {Bacillus subtilis} PDB: 3r7d_A 3r7l_A* 2at2_A
Probab=39.51 E-value=1.2e+02 Score=30.82 Aligned_cols=134 Identities=15% Similarity=0.144 Sum_probs=77.5
Q ss_pred EEEEEEeeCCCcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCChHHHHHHHHHHHhc-CcEEEE--cCCChhH
Q 002364 32 VNVGALFTLDSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMET-DIVAII--GPQCSTV 108 (930)
Q Consensus 32 i~IG~i~~~s~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~-~v~aii--Gp~~s~~ 108 (930)
-.|+.+|...+ ...+..|+.|+.++ +|..+.+...+++-.-...+....+.++. ++++|+ .+.. +.
T Consensus 37 k~la~lF~e~S---TRTR~SFE~A~~~L-------Gg~~i~l~~~~ss~~kgEsl~DTarvLs~~~~D~iviR~~~~-~~ 105 (304)
T 3r7f_A 37 KFAANLFFEPS---TRTRFSFEVAEKKL-------GMNVLNLDGTSTSVQKGETLYDTIRTLESIGVDVCVIRHSED-EY 105 (304)
T ss_dssp CEEEEEESSCC---SHHHHHHHHHHHHT-------TCEEEEEETTSTTSCSSSCHHHHHHHHHHHTCCEEEEECSST-TC
T ss_pred CEEEEEecCCC---hhHHHhHHHHHHHC-------CCeEEEECcccccCCCCCCHHHHHHHHHHhcCCEEEEecCCh-hH
Confidence 45889998776 47889999999986 35555554444432222333444444444 455544 4432 33
Q ss_pred HHHHHHhhccCCCcEEecccCCCCCCCCCCCceEeecCCchHHHHHHHHHH---Hhc---CccEEEEEEEcCccccchHH
Q 002364 109 AHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMV---SYY---GWNAVSVIFVDNEYGRNGVS 182 (930)
Q Consensus 109 ~~~v~~~~~~~~iP~is~~a~~~~l~~~~~p~~~r~~p~~~~~~~ai~~~l---~~~---~w~~v~ii~~d~~~g~~~~~ 182 (930)
. ..+++..++|+|.-+.++ ...| .+++++++ +++ ...+|+++. |.-......
T Consensus 106 ~---~~la~~~~vPVINagdg~-----~~HP------------tQaLaDl~Ti~e~~g~l~glkva~vG--D~~~~rva~ 163 (304)
T 3r7f_A 106 Y---EELVSQVNIPILNAGDGC-----GQHP------------TQSLLDLMTIYEEFNTFKGLTVSIHG--DIKHSRVAR 163 (304)
T ss_dssp H---HHHHHHCSSCEEESCCTT-----SCCH------------HHHHHHHHHHHHHHSCCTTCEEEEES--CCTTCHHHH
T ss_pred H---HHHHHhCCCCEEeCCCCC-----CcCc------------HHHHHHHHHHHHHhCCCCCCEEEEEc--CCCCcchHH
Confidence 3 334456789999732111 1122 46777763 333 346777664 322234667
Q ss_pred HHHHHHhhcceEEEEE
Q 002364 183 ALNDKLAERRCRISYK 198 (930)
Q Consensus 183 ~l~~~l~~~g~~v~~~ 198 (930)
.+..++...|.++...
T Consensus 164 Sl~~~~~~~G~~v~~~ 179 (304)
T 3r7f_A 164 SNAEVLTRLGARVLFS 179 (304)
T ss_dssp HHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHcCCEEEEE
Confidence 7788888889887654
No 315
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=39.39 E-value=48 Score=32.92 Aligned_cols=80 Identities=9% Similarity=0.019 Sum_probs=55.0
Q ss_pred EEEEEEE--cCccccchHHHHHHHHhhcceEEEEEEecCCCCCCChhHHHHHHHHHHhCC-ceEEEEEcC-hhhHHHHHH
Q 002364 166 AVSVIFV--DNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALME-SRVIVLHVS-PSLGFQVFS 241 (930)
Q Consensus 166 ~v~ii~~--d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~-~~viil~~~-~~~~~~~~~ 241 (930)
+++++.. +++|.......+.+++++.|..+.....- .. .+.......++.+.+.+ .|.||+... .......++
T Consensus 2 ~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~-~~--~~~~~~~~~i~~l~~~~~vdgii~~~~~~~~~~~~~~ 78 (276)
T 3ksm_A 2 KLLLVLKGDSNAYWRQVYLGAQKAADEAGVTLLHRSTK-DD--GDIAGQIQILSYHLSQAPPDALILAPNSAEDLTPSVA 78 (276)
T ss_dssp EEEEECSCSSSTHHHHHHHHHHHHHHHHTCEEEECCCS-ST--TCHHHHHHHHHHHHHHSCCSEEEECCSSTTTTHHHHH
T ss_pred eEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEECCC-CC--CCHHHHHHHHHHHHHhCCCCEEEEeCCCHHHHHHHHH
Confidence 5677763 46677888899999999999987643211 11 22444556677777777 999998764 345566788
Q ss_pred HHHHcCc
Q 002364 242 VAKYLGM 248 (930)
Q Consensus 242 ~a~~~g~ 248 (930)
.+.+.|+
T Consensus 79 ~~~~~~i 85 (276)
T 3ksm_A 79 QYRARNI 85 (276)
T ss_dssp HHHHTTC
T ss_pred HHHHCCC
Confidence 8887775
No 316
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=39.28 E-value=56 Score=32.84 Aligned_cols=80 Identities=8% Similarity=-0.005 Sum_probs=54.6
Q ss_pred CccEEEEEEEc-------CccccchHHHHHHHHhhcceEEEEEEecCCCCCCChhHHHHHHHHHHhCCceEEEEEcChhh
Q 002364 163 GWNAVSVIFVD-------NEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSL 235 (930)
Q Consensus 163 ~w~~v~ii~~d-------~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~ 235 (930)
.-+.|+++..+ ++|.......+.+++++.|..+.. .... .........++.+.+.+.|.||+......
T Consensus 7 ~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~---~~~~--~~~~~~~~~~~~~~~~~vdgiIi~~~~~~ 81 (292)
T 3k4h_A 7 TTKTLGLVMPSSASKAFQNPFFPEVIRGISSFAHVEGYALYM---STGE--TEEEIFNGVVKMVQGRQIGGIILLYSREN 81 (292)
T ss_dssp CCCEEEEECSSCHHHHTTSTHHHHHHHHHHHHHHHTTCEEEE---CCCC--SHHHHHHHHHHHHHTTCCCEEEESCCBTT
T ss_pred CCCEEEEEecCCccccccCHHHHHHHHHHHHHHHHcCCEEEE---EeCC--CCHHHHHHHHHHHHcCCCCEEEEeCCCCC
Confidence 44678888755 567778889999999999988764 2222 22344456677777889999998654432
Q ss_pred HHHHHHHHHHcCc
Q 002364 236 GFQVFSVAKYLGM 248 (930)
Q Consensus 236 ~~~~~~~a~~~g~ 248 (930)
...++.+.+.|+
T Consensus 82 -~~~~~~l~~~~i 93 (292)
T 3k4h_A 82 -DRIIQYLHEQNF 93 (292)
T ss_dssp -CHHHHHHHHTTC
T ss_pred -hHHHHHHHHCCC
Confidence 256677777664
No 317
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=38.34 E-value=1.6e+02 Score=26.54 Aligned_cols=85 Identities=13% Similarity=0.080 Sum_probs=48.7
Q ss_pred cEEEEEEEc-CccccchHHHHHHHHhhcceEEEEEEecCCCCCCChh-HHHHHHHHHHhCCceEEEEEcChhh----HHH
Q 002364 165 NAVSVIFVD-NEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTG-YVMDLLVKVALMESRVIVLHVSPSL----GFQ 238 (930)
Q Consensus 165 ~~v~ii~~d-~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~-~~~~~l~~l~~~~~~viil~~~~~~----~~~ 238 (930)
+++.++|.. ....+...+.+.+.+.+.|+++... +.. .. +....+..+. +.|.||+.+..-. ...
T Consensus 5 ~kv~IvY~S~~GnT~~iA~~ia~~l~~~g~~v~~~---~~~----~~~~~~~~~~~~~--~~d~ii~Gspty~g~~p~~~ 75 (159)
T 3fni_A 5 TSIGVFYVSEYGYSDRLAQAIINGITKTGVGVDVV---DLG----AAVDLQELRELVG--RCTGLVIGMSPAASAASIQG 75 (159)
T ss_dssp CEEEEEECTTSTTHHHHHHHHHHHHHHTTCEEEEE---ESS----SCCCHHHHHHHHH--TEEEEEEECCBTTSHHHHHH
T ss_pred CEEEEEEECCChHHHHHHHHHHHHHHHCCCeEEEE---ECc----CcCCHHHHHHHHH--hCCEEEEEcCcCCCCccHHH
Confidence 578899843 3333456788999998888876432 222 23 4445555554 4788888765321 135
Q ss_pred HHHHHHHcCcccCCeEEEEe
Q 002364 239 VFSVAKYLGMMGNGYVWIAT 258 (930)
Q Consensus 239 ~~~~a~~~g~~~~~~~~i~~ 258 (930)
++.......+.+.....+++
T Consensus 76 ~l~~l~~~~~~~k~va~fgs 95 (159)
T 3fni_A 76 ALSTILGSVNEKQAVGIFET 95 (159)
T ss_dssp HHHHHHHHCCTTSEEEEECC
T ss_pred HHHHHHhhcccCCEEEEEEc
Confidence 66665554443333334443
No 318
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=38.24 E-value=1.1e+02 Score=28.47 Aligned_cols=67 Identities=16% Similarity=0.130 Sum_probs=47.5
Q ss_pred cCccEEEEEEEcCc-c------c---cchHHHHHHHHhhcceEEEEEEecCCCCCCChhHHHHHHHHHHhC-CceEEEEE
Q 002364 162 YGWNAVSVIFVDNE-Y------G---RNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALM-ESRVIVLH 230 (930)
Q Consensus 162 ~~w~~v~ii~~d~~-~------g---~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~-~~~viil~ 230 (930)
+.--+|++|...|. + | ......+.+.+++.|.++.....++.+ .+.+...+++..+. ++|+||+.
T Consensus 13 ~~~~rv~IittGde~~~~~~~~G~i~Dsn~~~L~~~l~~~G~~v~~~~iv~Dd----~~~I~~al~~a~~~~~~DlVitt 88 (178)
T 2pjk_A 13 PKSLNFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIENGHKIIGYSLVPDD----KIKILKAFTDALSIDEVDVIIST 88 (178)
T ss_dssp CCCCEEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHTTCEEEEEEEECSC----HHHHHHHHHHHHTCTTCCEEEEE
T ss_pred CCCCEEEEEEeCcccccccccCCeEeehHHHHHHHHHHHCCCEEEEEEEeCCC----HHHHHHHHHHHHhcCCCCEEEEC
Confidence 34468888886542 1 2 233567888999999998877667644 77888888877654 58999987
Q ss_pred cC
Q 002364 231 VS 232 (930)
Q Consensus 231 ~~ 232 (930)
+.
T Consensus 89 GG 90 (178)
T 2pjk_A 89 GG 90 (178)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 319
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*
Probab=38.20 E-value=74 Score=32.90 Aligned_cols=82 Identities=9% Similarity=0.086 Sum_probs=52.4
Q ss_pred cEEEEEEEc---CccccchHHHHHHHHhhcceEEEEEE-ecCCCCCCChhHHHHHHHHHHhCCceEEEEEcChhhHHHHH
Q 002364 165 NAVSVIFVD---NEYGRNGVSALNDKLAERRCRISYKS-GIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVF 240 (930)
Q Consensus 165 ~~v~ii~~d---~~~g~~~~~~l~~~l~~~g~~v~~~~-~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~~~ 240 (930)
..|+++..+ ++|.......+.+++++.|..+.... ..... .+.......++.+...+.|.||+..........+
T Consensus 44 ~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~--~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~ 121 (342)
T 1jx6_A 44 IKISVVYPGQQVSDYWVRNIASFEKRLYKLNINYQLNQVFTRPN--ADIKQQSLSLMEALKSKSDYLIFTLDTTRHRKFV 121 (342)
T ss_dssp EEEEEEECCCSSCCHHHHHHHHHHHHHHHTTCCEEEEEEECCTT--CCHHHHHHHHHHHHHTTCSEEEECCSSSTTHHHH
T ss_pred eEEEEEecCCcccHHHHHHHHHHHHHHHHcCCeEEEEecCCCCc--cCHHHHHHHHHHHHhcCCCEEEEeCChHhHHHHH
Confidence 468887754 56777788899999999997765432 11100 1234445667777778899999944333334566
Q ss_pred HHHHHcCc
Q 002364 241 SVAKYLGM 248 (930)
Q Consensus 241 ~~a~~~g~ 248 (930)
+.+.+.|.
T Consensus 122 ~~~~~~~i 129 (342)
T 1jx6_A 122 EHVLDSTN 129 (342)
T ss_dssp HHHHHHCS
T ss_pred HHHHHcCC
Confidence 67766663
No 320
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=38.12 E-value=92 Score=29.13 Aligned_cols=65 Identities=12% Similarity=0.109 Sum_probs=46.6
Q ss_pred ccEEEEEEEcCcc--c--cchHHHHHHHHhhcceEEEEEEecCCCCCCChhHHHHHHHHHHhCCceEEEEEcC
Q 002364 164 WNAVSVIFVDNEY--G--RNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVS 232 (930)
Q Consensus 164 w~~v~ii~~d~~~--g--~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~ 232 (930)
--+|++|...|.- | ......+.+.+++.|.++.....++.+ .+.+...+++....++|+||+.+.
T Consensus 30 ~~rvaIistGdEl~~G~~Dsn~~~L~~~L~~~G~~v~~~~iv~Dd----~~~I~~al~~a~~~~~DlVIttGG 98 (185)
T 3rfq_A 30 VGRALVVVVDDRTAHGDEDHSGPLVTELLTEAGFVVDGVVAVEAD----EVDIRNALNTAVIGGVDLVVSVGG 98 (185)
T ss_dssp CEEEEEEEECHHHHTTCCCSHHHHHHHHHHHTTEEEEEEEEECSC----HHHHHHHHHHHHHTTCSEEEEESC
T ss_pred CCEEEEEEECcccCCCCcCcHHHHHHHHHHHCCCEEEEEEEeCCC----HHHHHHHHHHHHhCCCCEEEECCC
Confidence 3578888755431 2 223567888999999998887777644 777888888765567899998754
No 321
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=37.20 E-value=1.1e+02 Score=27.99 Aligned_cols=63 Identities=17% Similarity=0.165 Sum_probs=45.1
Q ss_pred EEEEEEEcCc--cc---cchHHHHHHHHhhcceEEEEEEecCCCCCCChhHHHHHHHHHHhC-CceEEEEEcC
Q 002364 166 AVSVIFVDNE--YG---RNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALM-ESRVIVLHVS 232 (930)
Q Consensus 166 ~v~ii~~d~~--~g---~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~-~~~viil~~~ 232 (930)
++++|...|+ .| ......+.+.+++.|.++.....++.+ .+.+...+++..+. ++|+||+.+.
T Consensus 3 ~v~Ii~tGdEl~~G~i~D~n~~~l~~~l~~~G~~v~~~~iv~Dd----~~~i~~~l~~~~~~~~~DlVittGG 71 (164)
T 2is8_A 3 RVGILTVSDKGFRGERQDTTHLAIREVLAGGPFEVAAYELVPDE----PPMIKKVLRLWADREGLDLILTNGG 71 (164)
T ss_dssp EEEEEEECHHHHHTSSCCCHHHHHHHHHTTSSEEEEEEEEECSC----HHHHHHHHHHHHHTSCCSEEEEESC
T ss_pred EEEEEEEcCcccCCCcccchHHHHHHHHHHCCCeEeEEEEcCCC----HHHHHHHHHHHHhcCCCCEEEEcCC
Confidence 5777765444 12 123467888999999998877777644 77888888887664 6899998754
No 322
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=37.17 E-value=1e+02 Score=32.10 Aligned_cols=84 Identities=11% Similarity=0.041 Sum_probs=54.6
Q ss_pred HHhcCccEEEEEEE--cCccccchHHHHHHHHhhcceEEEEEEecCCCCCCChhHHHHHHHHHHhCCceEEEEEcChhhH
Q 002364 159 VSYYGWNAVSVIFV--DNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLG 236 (930)
Q Consensus 159 l~~~~w~~v~ii~~--d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~ 236 (930)
++.-.-+.++++.. ++.|.......+.+.+.+.|..+..... . .+...-...++.+...+.|.||+......
T Consensus 65 l~~~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~----~~~~~~~~~~~~l~~~~vdGiI~~~~~~~- 138 (355)
T 3e3m_A 65 LTTKRSGFVGLLLPSLNNLHFAQTAQSLTDVLEQGGLQLLLGYT-A----YSPEREEQLVETMLRRRPEAMVLSYDGHT- 138 (355)
T ss_dssp ------CEEEEEESCSBCHHHHHHHHHHHHHHHHTTCEEEEEEC-T----TCHHHHHHHHHHHHHTCCSEEEEECSCCC-
T ss_pred hhcCCCCEEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeC-C----CChHHHHHHHHHHHhCCCCEEEEeCCCCC-
Confidence 33334467888874 3567777889999999999998765421 1 12445566777888889999998765433
Q ss_pred HHHHHHHHHcCc
Q 002364 237 FQVFSVAKYLGM 248 (930)
Q Consensus 237 ~~~~~~a~~~g~ 248 (930)
...++.+.+.|+
T Consensus 139 ~~~~~~l~~~~i 150 (355)
T 3e3m_A 139 EQTIRLLQRASI 150 (355)
T ss_dssp HHHHHHHHHCCS
T ss_pred HHHHHHHHhCCC
Confidence 255666777664
No 323
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=37.09 E-value=71 Score=32.55 Aligned_cols=79 Identities=11% Similarity=0.064 Sum_probs=52.0
Q ss_pred EEEEEEEcCc-cccchHHHHHHHHhhcceEEEEEEecCCCCCCChhHHHHHHHHHHhCCceEEEEEcCh-hhHHHHHHHH
Q 002364 166 AVSVIFVDNE-YGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSP-SLGFQVFSVA 243 (930)
Q Consensus 166 ~v~ii~~d~~-~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~-~~~~~~~~~a 243 (930)
+++++..+.. |.......+.+++++.|.++.... +.. .+.......++.+...+.|.||+.... ......++.+
T Consensus 3 ~Ig~i~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~--~~~--~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~ 78 (313)
T 2h3h_A 3 TIGVIGKSVHPYWSQVEQGVKAAGKALGVDTKFFV--PQK--EDINAQLQMLESFIAEGVNGIAIAPSDPTAVIPTIKKA 78 (313)
T ss_dssp EEEEECSCSSHHHHHHHHHHHHHHHHHTCEEEEEC--CSS--SCHHHHHHHHHHHHHTTCSEEEECCSSTTTTHHHHHHH
T ss_pred EEEEEeCCCcHHHHHHHHHHHHHHHHcCCEEEEEC--CCC--CCHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHHHH
Confidence 5677764311 777788889999999998876532 111 224455566777777889999986543 3334567777
Q ss_pred HHcCc
Q 002364 244 KYLGM 248 (930)
Q Consensus 244 ~~~g~ 248 (930)
.+.|.
T Consensus 79 ~~~~i 83 (313)
T 2h3h_A 79 LEMGI 83 (313)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 77664
No 324
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=36.92 E-value=25 Score=35.82 Aligned_cols=58 Identities=3% Similarity=0.012 Sum_probs=41.0
Q ss_pred cccchhhhHHHHHHhhhcCcC----ccccc----chhhhHHHHHHHHHhhhhhhhhhhheeeeccc
Q 002364 620 KRQVITILWFSLSTLFFAHKE----NTVST----LGRLVLIIWLFVVLIINSSYTASLTSILTVQQ 677 (930)
Q Consensus 620 ~~~~~~~~~~~~~~l~~~~~~----~~~s~----s~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~ 677 (930)
..++.+++|..+.++...|-. .|... +.+++..+.++.++++.+.++|-+.+.+....
T Consensus 178 F~s~~~a~~~~~~~~T~~g~~~di~~p~~~~~~~~~~~f~~~~~i~~~~~lnl~~aii~~~f~~~~ 243 (285)
T 3rvy_A 178 FGTLGESFYTLFQVMTLESWSMGIVRPLMEVYPYAWVFFIPFIFVVTFVMINLVVAICVDAMAILN 243 (285)
T ss_dssp HSSHHHHHHHHHHHHTTTTCCCCCHHHHHTTCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCChHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457889999999999876533 24333 33666677777789999999999999886543
No 325
>2b4l_A Glycine betaine-binding protein; substrate-binding protein, closed liganded, ABC-transporter, compatible solutes, transport protein; 2.00A {Bacillus subtilis} PDB: 2b4m_A* 3chg_D
Probab=36.87 E-value=44 Score=33.56 Aligned_cols=58 Identities=19% Similarity=0.270 Sum_probs=37.1
Q ss_pred CCceeEEEecCCccccceeeeccCCcceEeeeHHHHHHHHHhCCCcccEEEEecCCCCCCCCHHHHHHHHHcCcccEEEe
Q 002364 463 NGKLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVG 542 (930)
Q Consensus 463 ~g~~lrv~~~~~~~~~p~~~~~~~~~~~~G~~~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~D~~~~ 542 (930)
++++++||.. +|.. .-+...++..+.+.+|+++++... ++ .-+...|.+|++|+.+.
T Consensus 163 ~~~~I~ig~~---~w~e-----------~~~~~~v~~~~Le~~Gy~Ve~~~~--------~~-~~~~~al~~G~iD~~~e 219 (268)
T 2b4l_A 163 KGDKINLAYV---AWDS-----------EIASTNVIGKVLEDLGYEVTLTQV--------EA-GPMWTAIATGSADASLS 219 (268)
T ss_dssp SSCEEEEEEC---CCHH-----------HHHHHHHHHHHHHHHTCEEEEEEC--------CT-THHHHHHHHTSSSEEEE
T ss_pred cCcceEEEcc---CccH-----------HHHHHHHHHHHHHHcCCceEEEEC--------Ch-HHHHHHHHCCCCeEEeh
Confidence 4567888877 3321 012334455666778988666542 22 56678899999999865
Q ss_pred e
Q 002364 543 D 543 (930)
Q Consensus 543 ~ 543 (930)
.
T Consensus 220 ~ 220 (268)
T 2b4l_A 220 A 220 (268)
T ss_dssp E
T ss_pred h
Confidence 4
No 326
>2vvt_A Glutamate racemase; isomerase, peptidoglycan synthesis, cell WALL biogenesis/degradation, cell shape, benzyl purine, MURI inhibitor; HET: I24 DGL; 1.65A {Enterococcus faecalis} PDB: 2jfp_A* 2jfo_A* 2jfu_A 2jfv_A* 2jfw_A*
Probab=36.34 E-value=1.1e+02 Score=30.93 Aligned_cols=41 Identities=12% Similarity=0.136 Sum_probs=29.5
Q ss_pred HHHHHHHHHhcCcEEEEcCCChhHHHHHHHhhccCCCcEEe
Q 002364 85 GMVEALRFMETDIVAIIGPQCSTVAHIVSYVSNELQVPLLS 125 (930)
Q Consensus 85 a~~~a~~li~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is 125 (930)
..+.+..|.+.++.+|+-+-++..+.++..+-+..++|+|.
T Consensus 75 ~~~~~~~L~~~g~d~IVIACNTas~~~l~~lr~~~~iPVig 115 (290)
T 2vvt_A 75 TWEMADFLLKKRIKMLVIACNTATAVALEEIKAALPIPVVG 115 (290)
T ss_dssp HHHHHHHHHTTTCSEEEECCHHHHHHHHHHHHHHCSSCEEE
T ss_pred HHHHHHHHHHCCCCEEEEeCcchhHHHHHHHHHhCCCCEEc
Confidence 34444555566899999877666656677777788999996
No 327
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=36.19 E-value=1e+02 Score=30.96 Aligned_cols=78 Identities=15% Similarity=0.059 Sum_probs=53.0
Q ss_pred cEEEEEEEc--CccccchHHHHHHHHhhcceEEEEEEecCCCCCCChhHHHHHHHHHHhCCceEEEEEcChhhHHHHHHH
Q 002364 165 NAVSVIFVD--NEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSV 242 (930)
Q Consensus 165 ~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~~~~~ 242 (930)
+.++++..+ ++|.......+.+++++.|..+.... .. .+.......++.+.+.+.|.||+...... ...++.
T Consensus 17 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~---~~--~~~~~~~~~~~~l~~~~vdgiIi~~~~~~-~~~~~~ 90 (289)
T 2fep_A 17 TTVGVIIPDISSIFYSELARGIEDIATMYKYNIILSN---SD--QNMEKELHLLNTMLGKQVDGIVFMGGNIT-DEHVAE 90 (289)
T ss_dssp CEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEE---CT--TCHHHHHHHHHHHHHTTCSEEEECCSCCC-HHHHHH
T ss_pred CeEEEEeCCCCCchHHHHHHHHHHHHHHcCCEEEEEe---CC--CCHHHHHHHHHHHHhCCCCEEEEecCCCC-HHHHHH
Confidence 578888753 66777888999999999998876532 11 22444556777887888999998754322 335566
Q ss_pred HHHcCc
Q 002364 243 AKYLGM 248 (930)
Q Consensus 243 a~~~g~ 248 (930)
+.+.|.
T Consensus 91 l~~~~i 96 (289)
T 2fep_A 91 FKRSPV 96 (289)
T ss_dssp HHHSSS
T ss_pred HHhcCC
Confidence 666664
No 328
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=36.07 E-value=2.1e+02 Score=25.79 Aligned_cols=85 Identities=13% Similarity=0.068 Sum_probs=55.5
Q ss_pred cEEEEEEEcCccccchHHHHHHHHhhcceEEEEEEecCCCCCCChhHHHHHHHHHHhCCceEEEEEcCh----hhHHHHH
Q 002364 165 NAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSP----SLGFQVF 240 (930)
Q Consensus 165 ~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~----~~~~~~~ 240 (930)
.+|.+.....+.-.-+...+...++..|.+|.+-.. .......++.+++.++++|.+.+.. .....++
T Consensus 19 ~~vlla~~~gd~HdiG~~~va~~l~~~G~eVi~lG~--------~~p~e~lv~aa~~~~~diV~lS~~~~~~~~~~~~~i 90 (161)
T 2yxb_A 19 YKVLVAKMGLDGHDRGAKVVARALRDAGFEVVYTGL--------RQTPEQVAMAAVQEDVDVIGVSILNGAHLHLMKRLM 90 (161)
T ss_dssp CEEEEEEESSSSCCHHHHHHHHHHHHTTCEEECCCS--------BCCHHHHHHHHHHTTCSEEEEEESSSCHHHHHHHHH
T ss_pred CEEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCC--------CCCHHHHHHHHHhcCCCEEEEEeechhhHHHHHHHH
Confidence 455555555555555677788889999999874321 1223455667777899999998753 4566677
Q ss_pred HHHHHcCcccCCeEEEEe
Q 002364 241 SVAKYLGMMGNGYVWIAT 258 (930)
Q Consensus 241 ~~a~~~g~~~~~~~~i~~ 258 (930)
+++++.|.. .-.+|+++
T Consensus 91 ~~L~~~g~~-~i~v~vGG 107 (161)
T 2yxb_A 91 AKLRELGAD-DIPVVLGG 107 (161)
T ss_dssp HHHHHTTCT-TSCEEEEE
T ss_pred HHHHhcCCC-CCEEEEeC
Confidence 888887752 23456664
No 329
>3cg1_A UPF0100 protein PF0080; ABC transporter, binding protein, molybdate, tungstate, ligand, unknown function, transport protein; 1.60A {Pyrococcus furiosus} PDB: 3cg3_A
Probab=35.77 E-value=3.4e+02 Score=26.99 Aligned_cols=71 Identities=18% Similarity=0.159 Sum_probs=42.3
Q ss_pred HHHHHHH---Hh-CCCcccEEEEecCCCCCCCCHHHHHHHHHc-C-cccEEEeeeeeecCc---eeeeeecccccccceE
Q 002364 496 DVFTAAV---NL-LPYAVPYQFVAFGDGHKNPSYTQLVDSITT-G-VFDAVVGDITIVTNR---TKIVDFSQPYAASGLV 566 (930)
Q Consensus 496 dl~~~l~---~~-l~f~~~~~~~~~~~~~~~~~~~~~~~~l~~-g-~~D~~~~~~~~t~~r---~~~vdft~p~~~~~~~ 566 (930)
++++.+. ++ .|.++++.... ++-..++.++.+ | .+|+.+..-....++ ....+...||....++
T Consensus 21 ~~~~~F~~~~~~~~gi~V~~~~~~-------~~s~~l~~~i~~~g~~~Dv~~~~~~~~~~~l~~~g~~~~~~~~~~~~~v 93 (296)
T 3cg1_A 21 EVEKEFSEYAERNLGIKVSFQDEA-------SGSVMAVRKVTDLGRKADVIGVADYTLIPQLLIPNYTDFYVLFATNEIV 93 (296)
T ss_dssp HHHHHHHHHHHHHHSCCEEEEEEE-------ECHHHHHHHHHTSCCCCSEEEESSTTHHHHHTTTTTCSCCEEEEECCEE
T ss_pred HHHHHHHHHHHhCCCceEEEEeec-------CCHHHHHHHHHhCCCCCCEEEECChhHHHHHhcCCCCCcceecccccEE
Confidence 5777877 76 68665551032 335678888887 5 599987532111111 1122455678888888
Q ss_pred EEEeccC
Q 002364 567 VVVPFRK 573 (930)
Q Consensus 567 ~lv~~~~ 573 (930)
+++++..
T Consensus 94 i~~~~~~ 100 (296)
T 3cg1_A 94 IAFTDKS 100 (296)
T ss_dssp EEECTTS
T ss_pred EEEcCCC
Confidence 8887654
No 330
>3hhg_A Transcriptional regulator, LYSR family; transcription factor, structur genomics, oxford protein production facility, OPPF; 3.20A {Neisseria meningitidis serogroup B}
Probab=35.49 E-value=34 Score=34.66 Aligned_cols=80 Identities=8% Similarity=0.023 Sum_probs=48.8
Q ss_pred CceeEEEecCCccccceeeeccCCcceEeeeHHHHHHHHHhCCCcccEEEEecCCCCCCCCHHHHHHHHHcCcccEEEee
Q 002364 464 GKLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGD 543 (930)
Q Consensus 464 g~~lrv~~~~~~~~~p~~~~~~~~~~~~G~~~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~D~~~~~ 543 (930)
.+.||||+.. .+ ...+-..++..+.+..+ .+++.+.. ...+..+.+|++|+++..
T Consensus 92 ~g~l~I~~~~--~~------------~~~~l~~~l~~f~~~~P-~v~i~l~~----------~~~~~~l~~~~~Dl~i~~ 146 (306)
T 3hhg_A 92 QGVLSVDSAM--PM------------VLHLLAPLAAKFNERYP-HIRLSLVS----------SEGYINLIERKVDIALRA 146 (306)
T ss_dssp CEEEEEEBCH--HH------------HHHTHHHHHHHHHHHCT-TEEEEEEC----------CSSSHHHHTTSSSCEEES
T ss_pred CCcEEEEccH--HH------------HHHHHHHHHHHHHHHCC-CeEEEEEe----------ccchhhHhhcCccEEEEe
Confidence 3568988874 11 12456678888888875 35555542 122346789999999864
Q ss_pred eeeecCceeeeeecccccccceEEEEecc
Q 002364 544 ITIVTNRTKIVDFSQPYAASGLVVVVPFR 572 (930)
Q Consensus 544 ~~~t~~r~~~vdft~p~~~~~~~~lv~~~ 572 (930)
..... ..+. ..|+....+++++++.
T Consensus 147 ~~~~~---~~l~-~~~L~~~~~~~v~~~~ 171 (306)
T 3hhg_A 147 GELDD---SGLR-ARHLFDSRFRVIASPE 171 (306)
T ss_dssp CCCCC---SSCE-EEEEEEEEEEEEECHH
T ss_pred CCCCC---CCeE-EEEeeeeEEEEEECHH
Confidence 32222 2222 3567777888887754
No 331
>4ef1_A Pheromone COB1/lipoprotein, YAEC family; periplasmic methionine binding protein, NLPA lipoprotein, ST genomics; 1.90A {Enterococcus faecalis} PDB: 4ef2_A*
Probab=35.43 E-value=3.3e+02 Score=26.67 Aligned_cols=36 Identities=11% Similarity=0.170 Sum_probs=25.9
Q ss_pred HHHHHHhCCCcccEEEEecCCCCCCCCHHHHHHHHHcCcccEEE
Q 002364 498 FTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVV 541 (930)
Q Consensus 498 ~~~l~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~D~~~ 541 (930)
++...++.|++ ++++.| ..|.....+|.+|++|+..
T Consensus 22 v~~~l~k~Gi~--veiv~F------~dy~~pN~AL~~G~iD~n~ 57 (246)
T 4ef1_A 22 VKPLLEKEGVK--LEVTTY------TDYVLPNKALESGDIDANY 57 (246)
T ss_dssp HHHHHHHTTEE--EEEEEC------SSSSHHHHHHHHTSCSEEE
T ss_pred HHHHHHhcCCE--EEEEEe------CCchhHHHHHHCCCCCEEe
Confidence 45556667954 666665 3477788899999999864
No 332
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=35.38 E-value=98 Score=23.03 Aligned_cols=14 Identities=7% Similarity=0.133 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHH
Q 002364 837 GVACFIALVIYFLQ 850 (930)
Q Consensus 837 ~~g~~ls~~vf~~E 850 (930)
++|-++++++|+.-
T Consensus 13 vlGg~~~lll~~gl 26 (70)
T 2klu_A 13 VLGGVAGLLLFIGL 26 (70)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHH
Confidence 44445555555444
No 333
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=34.95 E-value=56 Score=32.94 Aligned_cols=85 Identities=8% Similarity=0.023 Sum_probs=54.3
Q ss_pred HHhcCccEEEEEEE--cCccccchHHHHHHHHhhcceEEEEEEecCCCCCCChhHHHHHHHHHHhCCceEEEEEcChhhH
Q 002364 159 VSYYGWNAVSVIFV--DNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLG 236 (930)
Q Consensus 159 l~~~~w~~v~ii~~--d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~ 236 (930)
|+.-.-..|+++.. +++|.......+.+++++.|..+..... . .+.......++.+...+.|.||+.......
T Consensus 15 L~~~~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~---~--~~~~~~~~~~~~l~~~~vdgii~~~~~~~~ 89 (293)
T 2iks_A 15 LRAGRTRSIGLVIPDLENTSYTRIANYLERQARQRGYQLLIACS---E--DQPDNEMRCIEHLLQRQVDAIIVSTSLPPE 89 (293)
T ss_dssp ---CCCCEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEEEC---T--TCHHHHHHHHHHHHHTTCSEEEECCSSCTT
T ss_pred hhcCCCcEEEEEeCCCcCcHHHHHHHHHHHHHHHCCCEEEEEcC---C--CCHHHHHHHHHHHHHcCCCEEEEeCCCCCc
Confidence 44444468888875 3567778889999999999988765321 1 124445566778777889999987544322
Q ss_pred HHHHHHHHHcCc
Q 002364 237 FQVFSVAKYLGM 248 (930)
Q Consensus 237 ~~~~~~a~~~g~ 248 (930)
..+++.+.+.|.
T Consensus 90 ~~~~~~~~~~~i 101 (293)
T 2iks_A 90 HPFYQRWANDPF 101 (293)
T ss_dssp CHHHHTTTTSSS
T ss_pred HHHHHHHHhCCC
Confidence 335555555553
No 334
>3lmz_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS isomerase; HET: MSE CIT PGE; 1.44A {Parabacteroides distasonis}
Probab=34.94 E-value=1.3e+02 Score=29.49 Aligned_cols=94 Identities=11% Similarity=-0.051 Sum_probs=66.1
Q ss_pred HHHHHHHHHhcCccEEEEEEEc--CccccchHHHHHHHHhhcceEEEEEEecCCCCCCChhHHHHHHHHHHhCCceEEEE
Q 002364 152 MTAVAEMVSYYGWNAVSVIFVD--NEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVL 229 (930)
Q Consensus 152 ~~ai~~~l~~~~w~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil 229 (930)
....++.++..|.+.|=+.... ........+.+++.+++.|+++........ .....+...++..+.-+++.|++
T Consensus 32 ~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~~~~~~---~~~~~~~~~i~~A~~lGa~~v~~ 108 (257)
T 3lmz_A 32 LDTTLKTLERLDIHYLCIKDFHLPLNSTDEQIRAFHDKCAAHKVTGYAVGPIYM---KSEEEIDRAFDYAKRVGVKLIVG 108 (257)
T ss_dssp HHHHHHHHHHTTCCEEEECTTTSCTTCCHHHHHHHHHHHHHTTCEEEEEEEEEE---CSHHHHHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHHhCCCEEEEecccCCCCCCHHHHHHHHHHHHHcCCeEEEEecccc---CCHHHHHHHHHHHHHhCCCEEEe
Confidence 4566777888898888765321 122345578999999999998875433221 23677888888888888999888
Q ss_pred EcChhhHHHHHHHHHHcCc
Q 002364 230 HVSPSLGFQVFSVAKYLGM 248 (930)
Q Consensus 230 ~~~~~~~~~~~~~a~~~g~ 248 (930)
+...+....+...|++.|+
T Consensus 109 ~p~~~~l~~l~~~a~~~gv 127 (257)
T 3lmz_A 109 VPNYELLPYVDKKVKEYDF 127 (257)
T ss_dssp EECGGGHHHHHHHHHHHTC
T ss_pred cCCHHHHHHHHHHHHHcCC
Confidence 7666667777777777775
No 335
>3uhf_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta sandwich fold, isomerase; HET: DGL; 1.83A {Campylobacter jejuni} PDB: 3uho_A* 3uhp_A
Probab=34.49 E-value=2.2e+02 Score=28.54 Aligned_cols=58 Identities=9% Similarity=-0.053 Sum_probs=36.7
Q ss_pred CCCEEEEEEecCC------CChHHHH----HHHHHHHhcCcEEEEcCCChhHHHHHHHhhccCCCcEEe
Q 002364 67 HGTKLNITMQSSN------CSGFIGM----VEALRFMETDIVAIIGPQCSTVAHIVSYVSNELQVPLLS 125 (930)
Q Consensus 67 ~g~~l~l~~~D~~------~~~~~a~----~~a~~li~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is 125 (930)
|+..+.+ +.|+. .++.... +.+..|.+.++.+|+=+-.+..+.++..+-+..++|+|.
T Consensus 48 P~e~~iy-~~D~a~~PYG~ks~e~i~~~~~~~~~~L~~~g~d~IVIACNTa~~~al~~lr~~~~iPvig 115 (274)
T 3uhf_A 48 LFDEIIY-YGDTARVPYGVKDKDTIIKFCLEALDFFEQFQIDMLIIACNTASAYALDALRAKAHFPVYG 115 (274)
T ss_dssp CCSEEEE-EECTTTCCCTTSCHHHHHHHHHHHHHHHTTSCCSEEEECCHHHHHHSHHHHHHHCSSCEEC
T ss_pred CCCCEEE-EecCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHhcCCCEEc
Confidence 6666644 45643 2333333 333344445999999877777766667777788999995
No 336
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=33.80 E-value=92 Score=30.96 Aligned_cols=70 Identities=6% Similarity=0.062 Sum_probs=48.1
Q ss_pred HHHHhcCccEEEEEEEc--CccccchHHHHHHHHhhcceE-EEEEEecCCCCCCChhHHHHHHHHHHhCCceEEEEEc
Q 002364 157 EMVSYYGWNAVSVIFVD--NEYGRNGVSALNDKLAERRCR-ISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHV 231 (930)
Q Consensus 157 ~~l~~~~w~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~-v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~ 231 (930)
+-++.-.-+.|+++..+ ++|.......+.+++++.|.. +... ... .+...-...++.+.+.+.|.||+..
T Consensus 3 r~L~~~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~---~~~--~~~~~~~~~~~~l~~~~vdgiIi~~ 75 (277)
T 3hs3_A 3 LTLYQKKSKMIGIIIPDLNNRFYAQIIDGIQEVIQKEGYTALISF---STN--SDVKKYQNAIINFENNNVDGIITSA 75 (277)
T ss_dssp -----CCCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEE---CSS--CCHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred hhhhcCCCCEEEEEeCCCCChhHHHHHHHHHHHHHHCCCCEEEEE---eCC--CChHHHHHHHHHHHhCCCCEEEEcc
Confidence 34444555789988854 667778889999999999998 6542 211 2245556677888888999999987
No 337
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=33.75 E-value=2e+02 Score=23.85 Aligned_cols=56 Identities=11% Similarity=0.147 Sum_probs=39.6
Q ss_pred hHHHHHHHHhhcceEEEEEEecCCCCCCChhHHHHHHHHHHhCCceEEEEEcC--hhhHHHHHHHHHHc
Q 002364 180 GVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVS--PSLGFQVFSVAKYL 246 (930)
Q Consensus 180 ~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~--~~~~~~~~~~a~~~ 246 (930)
..+.+.+.+++.|..+.. ..+....+..+.+..+|+|++... ..++..++++.++.
T Consensus 15 ~~~~l~~~L~~~g~~v~~-----------~~~~~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~ 72 (127)
T 3i42_A 15 AAETFKELLEMLGFQADY-----------VMSGTDALHAMSTRGYDAVFIDLNLPDTSGLALVKQLRAL 72 (127)
T ss_dssp HHHHHHHHHHHTTEEEEE-----------ESSHHHHHHHHHHSCCSEEEEESBCSSSBHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcCCCEEE-----------ECCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhh
Confidence 566777888888876542 123345566677788999999754 45678889988886
No 338
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=33.55 E-value=82 Score=32.77 Aligned_cols=78 Identities=13% Similarity=0.049 Sum_probs=52.0
Q ss_pred cEEEEEEE--cCccccchHHHHHHHHhhcceEEEEEEecCCCCCCChhHHHHHHHHHHhCCceEEEEEcChhhHHHHHHH
Q 002364 165 NAVSVIFV--DNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSV 242 (930)
Q Consensus 165 ~~v~ii~~--d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~~~~~ 242 (930)
+.|+++.. +++|.......+.+.+++.|..+..... . .+.......++.+...+.|.||+...... ...++.
T Consensus 67 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~--~~~~~~~~~~~~l~~~~vdgiI~~~~~~~-~~~~~~ 140 (348)
T 3bil_A 67 NTIGVIVPSLINHYFAAMVTEIQSTASKAGLATIITNS---N--EDATTMSGSLEFLTSHGVDGIICVPNEEC-ANQLED 140 (348)
T ss_dssp -CEEEEESCSSSHHHHHHHHHHHHHHHHTTCCEEEEEC---T--TCHHHHHHHHHHHHHTTCSCEEECCCGGG-HHHHHH
T ss_pred CEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCEEEEEeC---C--CCHHHHHHHHHHHHhCCCCEEEEeCCCCC-hHHHHH
Confidence 56888874 3567778889999999999988765321 1 12444556777777788999998765433 245666
Q ss_pred HHHcCc
Q 002364 243 AKYLGM 248 (930)
Q Consensus 243 a~~~g~ 248 (930)
+.+.|.
T Consensus 141 l~~~~i 146 (348)
T 3bil_A 141 LQKQGM 146 (348)
T ss_dssp HHHC-C
T ss_pred HHhCCC
Confidence 666664
No 339
>1oj7_A Hypothetical oxidoreductase YQHD; structural genomics; HET: NZQ; 2.0A {Escherichia coli} SCOP: e.22.1.2
Probab=33.10 E-value=62 Score=34.84 Aligned_cols=83 Identities=13% Similarity=0.113 Sum_probs=55.2
Q ss_pred HHHHHHhcCccEEEEEEEcCcccc-chHHHHHHHHhhcceEEEEEEecCCCCCCChhHHHHHHHHHHhCCceEEEEEcCh
Q 002364 155 VAEMVSYYGWNAVSVIFVDNEYGR-NGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSP 233 (930)
Q Consensus 155 i~~~l~~~~w~~v~ii~~d~~~g~-~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~ 233 (930)
+.++++ +| +++.+|+.+..... ...+.+.+.++ |+++..-....++ .+.+.+...++.+++.++|+||-.+.+
T Consensus 43 l~~~l~-~g-~r~liVtd~~~~~~~g~~~~v~~~L~--g~~~~~f~~v~~~--p~~~~v~~~~~~~~~~~~D~IIavGGG 116 (408)
T 1oj7_A 43 LREQIP-HD-ARVLITYGGGSVKKTGVLDQVLDALK--GMDVLEFGGIEPN--PAYETLMNAVKLVREQKVTFLLAVGGG 116 (408)
T ss_dssp HHHHSC-TT-CEEEEEECSSHHHHHSHHHHHHHHTT--TSEEEEECCCCSS--CBHHHHHHHHHHHHHHTCCEEEEEESH
T ss_pred HHHHHh-cC-CEEEEEECCchhhhccHHHHHHHHhC--CCEEEEeCCcCCC--cCHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 455566 67 89998885443333 25678888886 7665433333333 456778888888888899999977654
Q ss_pred --hhHHHHHHHH
Q 002364 234 --SLGFQVFSVA 243 (930)
Q Consensus 234 --~~~~~~~~~a 243 (930)
-+++.++...
T Consensus 117 sviD~AK~iA~~ 128 (408)
T 1oj7_A 117 SVLDGTKFIAAA 128 (408)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 4666666554
No 340
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=32.88 E-value=1.2e+02 Score=30.40 Aligned_cols=79 Identities=8% Similarity=0.067 Sum_probs=54.1
Q ss_pred cEEEEEEE--cCccccchHHHHHHHHhhcce-EEEEEEecCCCCCCChhHHHHHHHHHHhCCceEEEEEcChh-hHHHHH
Q 002364 165 NAVSVIFV--DNEYGRNGVSALNDKLAERRC-RISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPS-LGFQVF 240 (930)
Q Consensus 165 ~~v~ii~~--d~~~g~~~~~~l~~~l~~~g~-~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~-~~~~~~ 240 (930)
+.|+++.. +++|.......+.+++++.|. .+..... . .+.......++.+...+.|.||+..... .....+
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~---~--~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~~~~~ 77 (309)
T 2fvy_A 3 TRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDS---Q--NDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVI 77 (309)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHHHHTCTTEEEEEEEC---T--TCHHHHHHHHHHHHHTTCSEEEECCSSGGGHHHHH
T ss_pred cEEEEEeccCCcHHHHHHHHHHHHHHHhcCCeEEEEecC---C--CCHHHHHHHHHHHHHcCCCEEEEeCCCcchhHHHH
Confidence 46777774 456777888999999999996 7664321 1 1244455667777778899999875443 345677
Q ss_pred HHHHHcCc
Q 002364 241 SVAKYLGM 248 (930)
Q Consensus 241 ~~a~~~g~ 248 (930)
+++.+.|+
T Consensus 78 ~~~~~~~i 85 (309)
T 2fvy_A 78 EKARGQNV 85 (309)
T ss_dssp HHHHTTTC
T ss_pred HHHHHCCC
Confidence 77777664
No 341
>1ta9_A Glycerol dehydrogenase; oxidoredu; 1.90A {Schizosaccharomyces pombe}
Probab=32.87 E-value=65 Score=35.14 Aligned_cols=96 Identities=10% Similarity=0.005 Sum_probs=61.7
Q ss_pred HHHHHHHhcCccEEEEEEEcCccccchHHHHHHHHhhcceEEEEEEecCCCCCCChhHHHHHHHHHHhCCceEEEEEcCh
Q 002364 154 AVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSP 233 (930)
Q Consensus 154 ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~ 233 (930)
.+.++++.+|.+++.+|++...+. ...+.+.+.+++.|+++.+. .+... .+.+++....+.+++ ++|+||-.+.+
T Consensus 81 ~l~~~l~~~g~~rvlIVtd~~~~~-~~~~~v~~~L~~~gi~~~~~-~~~ge--~~~~~v~~~~~~~~~-~~D~IIAvGGG 155 (450)
T 1ta9_A 81 RSYMYVKKWATKSAVVLADQNVWN-ICANKIVDSLSQNGMTVTKL-VFGGE--ASLVELDKLRKQCPD-DTQVIIGVGGG 155 (450)
T ss_dssp GHHHHHTTTCSSEEEEEEEHHHHH-HTHHHHHHHHHHTTCEEEEE-EECSC--CCHHHHHHHHTTSCT-TCCEEEEEESH
T ss_pred HHHHHHHhcCCCEEEEEECccHHH-HHHHHHHHHHHHCCCeEEEE-eeCCC--CCHHHHHHHHHHHhh-CCCEEEEeCCc
Confidence 355677777866999888654433 46788899999889887432 23333 335567776666777 89999977654
Q ss_pred --hhHHHHHHHHHHcCcccCCeEEEEeC
Q 002364 234 --SLGFQVFSVAKYLGMMGNGYVWIATD 259 (930)
Q Consensus 234 --~~~~~~~~~a~~~g~~~~~~~~i~~~ 259 (930)
-+++.++... .| ..++-|-|.
T Consensus 156 SviD~AK~iA~~--~g---iP~I~IPTT 178 (450)
T 1ta9_A 156 KTMDSAKYIAHS--MN---LPSIICPTT 178 (450)
T ss_dssp HHHHHHHHHHHH--TT---CCEEEEESS
T ss_pred HHHHHHHHHHHh--cC---CCEEEEeCC
Confidence 4566655522 23 345555554
No 342
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=32.84 E-value=87 Score=31.10 Aligned_cols=115 Identities=12% Similarity=0.089 Sum_probs=66.7
Q ss_pred EEEEEeeCCCcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCChHHHHHHHHHHHhc--CcEEEEcCCChhHHH
Q 002364 33 NVGALFTLDSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMET--DIVAIIGPQCSTVAH 110 (930)
Q Consensus 33 ~IG~i~~~s~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~--~v~aiiGp~~s~~~~ 110 (930)
+|+++...... ...-..|+..|+++.+ .++.........+...+.+.+.+++.. ++.||+... ...+.
T Consensus 120 ~i~~i~~~~~~-~~~R~~gf~~~l~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~-d~~a~ 189 (280)
T 3gyb_A 120 HIAHLRVGSGA-GLRRFESFEATMRAHG--------LEPLSNDYLGPAVEHAGYTETLALLKEHPEVTAIFSSN-DITAI 189 (280)
T ss_dssp SEEEECCSSHH-HHHHHHHHHHHHHHTT--------CCCEECCCCSCCCHHHHHHHHHHHHHHCTTCCEEEESS-HHHHH
T ss_pred eEEEEeCCCch-HHHHHHHHHHHHHHcC--------cCCCcccccCCCCHHHHHHHHHHHHhCCCCCCEEEECC-hHHHH
Confidence 57777665433 4555677777777642 122222244555777888888888876 589999754 44455
Q ss_pred HHHHhhccCC------CcEEecccCCCCCCCCCCCceEeecCCchHHHHHHHHHH
Q 002364 111 IVSYVSNELQ------VPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMV 159 (930)
Q Consensus 111 ~v~~~~~~~~------iP~is~~a~~~~l~~~~~p~~~r~~p~~~~~~~ai~~~l 159 (930)
.+...+.+.+ +.++++.... +.....|-+-....+...++...++++
T Consensus 190 g~~~al~~~g~~vP~di~vvg~d~~~--~~~~~~p~lttv~~~~~~~g~~av~~l 242 (280)
T 3gyb_A 190 GALGAARELGLRVPEDLSIIGYDNTP--LAQTRLINLTTIDDNSIGVGYNAALLL 242 (280)
T ss_dssp HHHHHHHHHTCCTTTTCEEEEESCCH--HHHSTTTCCCEEECCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCeeEEEEECCch--HhhccCCCceEEecCHHHHHHHHHHHH
Confidence 5555554443 4467664332 222223445555566667777766654
No 343
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=32.63 E-value=62 Score=32.85 Aligned_cols=87 Identities=9% Similarity=-0.006 Sum_probs=53.7
Q ss_pred HHHHHhcCccEEEEEEE--cCccccchHHHHHHHHhhcceEEEEEEecCCCCCCChhHHHHHHHHHHhCCceEEEEEcCh
Q 002364 156 AEMVSYYGWNAVSVIFV--DNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSP 233 (930)
Q Consensus 156 ~~~l~~~~w~~v~ii~~--d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~ 233 (930)
|+-|+.-.-+.|+++.. +++|.......+.+++++.|..+..... . .+.......++.+.+.+.|.||+....
T Consensus 7 Ar~L~~~~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~----~~~~~~~~~~~~l~~~~vdgiI~~~~~ 81 (303)
T 3kke_A 7 ARALRHSRSGTIGLIVPDVNNAVFADMFSGVQMAASGHSTDVLLGQI-D----APPRGTQQLSRLVSEGRVDGVLLQRRE 81 (303)
T ss_dssp ----------CEEEEESCTTSTTHHHHHHHHHHHHHHTTCCEEEEEC-C----STTHHHHHHHHHHHSCSSSEEEECCCT
T ss_pred HHHHhhCCCCEEEEEeCCCcChHHHHHHHHHHHHHHHCCCEEEEEeC-C----CChHHHHHHHHHHHhCCCcEEEEecCC
Confidence 33344444467888875 3567788899999999999988765322 1 124455667888888899999997654
Q ss_pred hhHHHHHHHHHHcCc
Q 002364 234 SLGFQVFSVAKYLGM 248 (930)
Q Consensus 234 ~~~~~~~~~a~~~g~ 248 (930)
......+..+.+ |+
T Consensus 82 ~~~~~~~~~l~~-~i 95 (303)
T 3kke_A 82 DFDDDMLAAVLE-GV 95 (303)
T ss_dssp TCCHHHHHHHHT-TS
T ss_pred CCcHHHHHHHhC-CC
Confidence 332225666666 64
No 344
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=32.52 E-value=1.1e+02 Score=20.86 Aligned_cols=7 Identities=14% Similarity=-0.168 Sum_probs=2.6
Q ss_pred HHHHhhh
Q 002364 851 IMQQLCK 857 (930)
Q Consensus 851 ~~~~~~~ 857 (930)
+++.++|
T Consensus 31 ~~~~RRR 37 (44)
T 2l2t_A 31 AVYVRRK 37 (44)
T ss_dssp HHHHHTT
T ss_pred HHHhhhh
Confidence 3333333
No 345
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=32.40 E-value=1.2e+02 Score=31.18 Aligned_cols=81 Identities=12% Similarity=-0.005 Sum_probs=53.0
Q ss_pred cCccEEEEEEE--cCccccchHHHHHHHHhhcceEEEEEEecCCCCCCChhHHHHHHHHHHhCCceEEEEEcChhhHHHH
Q 002364 162 YGWNAVSVIFV--DNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQV 239 (930)
Q Consensus 162 ~~w~~v~ii~~--d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~~ 239 (930)
-.-..|+++.. +++|.......+.+.+++.|..+..... . .+.......++.+...+.|.||+...... ...
T Consensus 61 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~---~--~~~~~~~~~~~~l~~~~vdgiI~~~~~~~-~~~ 134 (332)
T 2o20_A 61 KRTTTVGVILPTITSTYFAAITRGVDDIASMYKYNMILANS---D--NDVEKEEKVLETFLSKQVDGIVYMGSSLD-EKI 134 (332)
T ss_dssp -CCCEEEEEESCTTCHHHHHHHHHHHHHHHHTTCEEEEEEC---T--TCHHHHHHHHHHHHHTTCSEEEECSSCCC-HHH
T ss_pred CCCCEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCEEEEEEC---C--CChHHHHHHHHHHHhCCCCEEEEeCCCCC-HHH
Confidence 34467888875 3567778889999999999988765321 1 12444556677777788999998764222 234
Q ss_pred HHHHHHcCc
Q 002364 240 FSVAKYLGM 248 (930)
Q Consensus 240 ~~~a~~~g~ 248 (930)
++.+.+.|.
T Consensus 135 ~~~l~~~~i 143 (332)
T 2o20_A 135 RTSLKNSRT 143 (332)
T ss_dssp HHHHHHHCC
T ss_pred HHHHHhCCC
Confidence 555555554
No 346
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=31.51 E-value=1.1e+02 Score=28.29 Aligned_cols=63 Identities=17% Similarity=0.165 Sum_probs=43.4
Q ss_pred EEEEEEEcCc-c------c---cchHHHHHHHHhhcceEEEEEEecCCCCCCChhHHHHHHHHHHh-CCceEEEEEcC
Q 002364 166 AVSVIFVDNE-Y------G---RNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVAL-MESRVIVLHVS 232 (930)
Q Consensus 166 ~v~ii~~d~~-~------g---~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~-~~~~viil~~~ 232 (930)
++++|...|. + | ...-..+.+.+.+.|.++.....++.+ .+.+...+.+..+ .++|+||..+.
T Consensus 17 ~v~iitvsd~~~~~~~~~g~i~D~ng~~L~~~L~~~G~~v~~~~iV~Dd----~~~i~~al~~~~a~~~~DlVittGG 90 (178)
T 3iwt_A 17 NFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIENGHKIIGYSLVPDD----KIKILKAFTDALSIDEVDVIISTGG 90 (178)
T ss_dssp EEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHTTCEEEEEEEECSC----HHHHHHHHHHHHTCTTCCEEEEESC
T ss_pred EEEEEEEcCCCccccccCCCCCcchHHHHHHHHHHCCCEEEEEEEeCCC----HHHHHHHHHHHHhcCCCCEEEecCC
Confidence 7888875431 1 1 122367889999999999887777744 6777777776543 56899998754
No 347
>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1
Probab=31.13 E-value=1.1e+02 Score=33.29 Aligned_cols=144 Identities=10% Similarity=0.006 Sum_probs=90.0
Q ss_pred ChHHHHHHHHHHHhcCcEEEE-cC-C----Ch---hHHHHHHHhhccCCCcEEecccCCCCCCCCCCCceEeecCCchHH
Q 002364 81 SGFIGMVEALRFMETDIVAII-GP-Q----CS---TVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQ 151 (930)
Q Consensus 81 ~~~~a~~~a~~li~~~v~aii-Gp-~----~s---~~~~~v~~~~~~~~iP~is~~a~~~~l~~~~~p~~~r~~p~~~~~ 151 (930)
.+..+...+.++++.++.+++ -+ . .. .....+...+.++++.+|.+.|.. +-+.....-.-..|..
T Consensus 73 p~~~~~~~v~e~~~~Gi~~vv~~s~G~~e~g~~g~~~~~~l~~~a~~~g~~viGPnc~G--v~~~~~~~~~~~~~~~--- 147 (457)
T 2csu_A 73 PKRFVKDTLIQCGEKGVKGVVIITAGFGETGEEGKREEKELVEIAHKYGMRIIGPNCVG--IMNTHVDLNATFITVA--- 147 (457)
T ss_dssp CHHHHHHHHHHHHHHTCCEEEECCCSSTTSCHHHHHHHHHHHHHHHHHTCEEECSSCCE--EEEGGGTEEEESSCCC---
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCCCccccccHHHHHHHHHHHHHcCCEEEcCCcce--EEccCCCceeeecCCC---
Confidence 356666777788877766543 11 1 11 125677888899999999766542 2211101111222221
Q ss_pred HHHHHHHHHhcCccEEEEEEEcCccccchHHHHHHHHhhcceEEEEEEecCCCCCCChhHHHHHHHHHHh-CCceEEEEE
Q 002364 152 MTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVAL-MESRVIVLH 230 (930)
Q Consensus 152 ~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~-~~~~viil~ 230 (930)
.. -+|++|.+... +...+.+.+.+.|+-++....+-.. .+.++...|+.+.+ .++++|+++
T Consensus 148 ---------~~--G~v~~vsqSG~----~~~~~~~~~~~~g~G~s~~vs~G~~---~~~~~~d~l~~~~~D~~t~~I~l~ 209 (457)
T 2csu_A 148 ---------KK--GNVAFISQSGA----LGAGIVYKTIKEDIGFSKFISVGNM---ADVDFAELMEYLADTEEDKAIALY 209 (457)
T ss_dssp ---------EE--CSEEEEESCHH----HHHHHHHHHHHTTCEESEEEECTTC---CSSCHHHHHHHHTTCSSCCEEEEE
T ss_pred ---------CC--CCEEEEeCCHH----HHHHHHHHHHhcCCCeeEEEECCCc---CCCCHHHHHHHHhcCCCCCEEEEE
Confidence 11 46888876654 3455666777788777766555443 25567777887754 678999999
Q ss_pred cCh-hhHHHHHHHHHHcC
Q 002364 231 VSP-SLGFQVFSVAKYLG 247 (930)
Q Consensus 231 ~~~-~~~~~~~~~a~~~g 247 (930)
..+ .+...+++.|+...
T Consensus 210 ~E~i~~~~~f~~~a~~~~ 227 (457)
T 2csu_A 210 IEGVRNGKKFMEVAKRVT 227 (457)
T ss_dssp ESCCSCHHHHHHHHHHHH
T ss_pred EecCCCHHHHHHHHHHhc
Confidence 998 67888998888764
No 348
>1duv_G Octase-1, ornithine transcarbamoylase; enzyme-inhibitor complex, transferase; HET: PSQ; 1.70A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1akm_A* 2otc_A*
Probab=30.93 E-value=4.6e+02 Score=26.98 Aligned_cols=134 Identities=14% Similarity=0.123 Sum_probs=78.5
Q ss_pred eEEEEEEeeCCCcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCChHHHHHHHHHHHhc--CcEEEEcCCChhH
Q 002364 31 VVNVGALFTLDSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMET--DIVAIIGPQCSTV 108 (930)
Q Consensus 31 ~i~IG~i~~~s~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~--~v~aiiGp~~s~~ 108 (930)
.-.|+.+|...+ ...+..|+.|+.++ +|..+.+...+++-.-...+....+.++. .+.++=++. ...
T Consensus 44 gk~la~lF~e~S---TRTR~SFE~A~~~L-------Gg~~i~l~~~~ss~~kgEsl~DTarvLs~~~D~IviR~~~-~~~ 112 (333)
T 1duv_G 44 GKNIALIFEKDS---TRTRCSFEVAAYDQ-------GARVTYLGPSGSQIGHKESIKDTARVLGRMYDGIQYRGYG-QEI 112 (333)
T ss_dssp TCEEEEEESSCC---SHHHHHHHHHHHHT-------TCEEEEECSSSSCBTTTBCHHHHHHHHTTTCSEEEEECSC-HHH
T ss_pred CCEEEEEecCCC---ccHHHHHHHHHHHc-------CCeEEEECCccccCcCCCcHHHHHHHHHHhCCEEEEEcCC-chH
Confidence 357889998766 37899999999987 34444443333332223344455555555 444444543 233
Q ss_pred HHHHHHhhccCCCcEEecccCCCCCCCCCCCceEeecCCchHHHHHHHHHH---Hh-cC--c--cEEEEEEEcCccccch
Q 002364 109 AHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMV---SY-YG--W--NAVSVIFVDNEYGRNG 180 (930)
Q Consensus 109 ~~~v~~~~~~~~iP~is~~a~~~~l~~~~~p~~~r~~p~~~~~~~ai~~~l---~~-~~--w--~~v~ii~~d~~~g~~~ 180 (930)
+..+++..++|+|.- .+ +...| .+++++++ ++ +| . .+|+++ .|.. ...
T Consensus 113 ---~~~lA~~~~vPVINa--~~----~~~HP------------tQ~LaDl~Ti~e~~~g~~l~gl~ia~v--GD~~-~~v 168 (333)
T 1duv_G 113 ---VETLAEYASVPVWNG--LT----NEFHP------------TQLLADLLTMQEHLPGKAFNEMTLVYA--GDAR-NNM 168 (333)
T ss_dssp ---HHHHHHHHSSCEEES--CC----SSCCH------------HHHHHHHHHHHHHSTTCCGGGCEEEEE--SCTT-SHH
T ss_pred ---HHHHHHhCCCCeEcC--CC----CCCCc------------hHHHHHHHHHHHHhcCCCCCCcEEEEE--CCCc-cch
Confidence 344455568999972 22 22222 47777763 45 56 3 355554 3432 357
Q ss_pred HHHHHHHHhhcceEEEEEE
Q 002364 181 VSALNDKLAERRCRISYKS 199 (930)
Q Consensus 181 ~~~l~~~l~~~g~~v~~~~ 199 (930)
...+...+...|.++....
T Consensus 169 a~Sl~~~~~~~G~~v~~~~ 187 (333)
T 1duv_G 169 GNSMLEAAALTGLDLRLVA 187 (333)
T ss_dssp HHHHHHHHHHHCCEEEEEC
T ss_pred HHHHHHHHHHcCCEEEEEC
Confidence 7788888888898876543
No 349
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=30.91 E-value=2e+02 Score=24.02 Aligned_cols=57 Identities=16% Similarity=0.195 Sum_probs=38.6
Q ss_pred hHHHHHHHHhhcceEEEEEEecCCCCCCChhHHHHHHHHHHhCCceEEEEEcC--hhhHHHHHHHHHHcC
Q 002364 180 GVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVS--PSLGFQVFSVAKYLG 247 (930)
Q Consensus 180 ~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~--~~~~~~~~~~a~~~g 247 (930)
....+.+.+++.|..+.. ..+....+..+.+..+|+|++... ..++..++++.++..
T Consensus 18 ~~~~l~~~L~~~g~~v~~-----------~~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~ 76 (132)
T 3lte_A 18 MAAAIERVLKRDHWQVEI-----------AHNGFDAGIKLSTFEPAIMTLDLSMPKLDGLDVIRSLRQNK 76 (132)
T ss_dssp HHHHHHHHHHHTTCEEEE-----------ESSHHHHHHHHHHTCCSEEEEESCBTTBCHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHCCcEEEE-----------eCCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHhcC
Confidence 456677777778876642 112344566667778999999754 446778888888765
No 350
>2g2c_A Putative molybdenum cofactor biosynthesis protein; structural genomics, PSI, protein structure initiative; 1.50A {Corynebacterium diphtheriae} SCOP: c.57.1.1
Probab=30.72 E-value=1e+02 Score=28.12 Aligned_cols=64 Identities=14% Similarity=0.210 Sum_probs=41.8
Q ss_pred cEEEEEEEcCcc--c---cchHHHHHHH----HhhcceEEEEEEecCCCCCCChhHHHHHHHHHHhCCceEEEEEcC
Q 002364 165 NAVSVIFVDNEY--G---RNGVSALNDK----LAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVS 232 (930)
Q Consensus 165 ~~v~ii~~d~~~--g---~~~~~~l~~~----l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~ 232 (930)
-++++|...|+- | ......+.+. +++.|.++.....++.+ .+.+...+++..+.++|+||+.+.
T Consensus 6 ~~v~Ii~~GdEl~~G~i~D~n~~~l~~~~~~~l~~~G~~v~~~~iv~Dd----~~~I~~~l~~a~~~~~DlVittGG 78 (167)
T 2g2c_A 6 IKSAIIVVSDRISTGTRENKALPLLQRLMSDELQDYSYELISEVVVPEG----YDTVVEAIATALKQGARFIITAGG 78 (167)
T ss_dssp EEEEEEEECHHHHHTSSCCCHHHHHHHHHCC----CEEEEEEEEEECSS----HHHHHHHHHHHHHTTCSEEEEESC
T ss_pred cEEEEEEECCcccCCceeccHHHHHHHhHHhHHHHCCCEEeEEEEeCCC----HHHHHHHHHHHHhCCCCEEEECCC
Confidence 367777654432 2 1234567778 88899988877677644 778888888876656899998754
No 351
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=30.65 E-value=1e+02 Score=30.92 Aligned_cols=78 Identities=10% Similarity=0.060 Sum_probs=52.7
Q ss_pred ccEEEEEEE------cCccccchHHHHHHHHhhcceEEEEEEecCCCCCCChhHHHHHHHHHHhCCceEEEEEcChhhHH
Q 002364 164 WNAVSVIFV------DNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGF 237 (930)
Q Consensus 164 w~~v~ii~~------d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~ 237 (930)
-+.|+++.. +++|.......+.+++++.|..+.....-. .......++.+.+.+.|.||+.......
T Consensus 6 s~~Igvi~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~------~~~~~~~~~~l~~~~vdGiIi~~~~~~~- 78 (294)
T 3qk7_A 6 TDAIALAYPSRPRVLNNSTFLEMISWIGIELGKRGLDLLLIPDEP------GEKYQSLIHLVETRRVDALIVAHTQPED- 78 (294)
T ss_dssp CCEEEEEEESCSGGGSCHHHHHHHHHHHHHHHHTTCEEEEEEECT------TCCCHHHHHHHHHTCCSEEEECSCCSSC-
T ss_pred cceEEEEecCCCccccChhHHHHHHHHHHHHHHCCCEEEEEeCCC------hhhHHHHHHHHHcCCCCEEEEeCCCCCh-
Confidence 367888876 356777788999999999998877654322 1223445666667789999987654322
Q ss_pred HHHHHHHHcCc
Q 002364 238 QVFSVAKYLGM 248 (930)
Q Consensus 238 ~~~~~a~~~g~ 248 (930)
..++.+.+.|+
T Consensus 79 ~~~~~l~~~~i 89 (294)
T 3qk7_A 79 FRLQYLQKQNF 89 (294)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHhCCC
Confidence 56667777664
No 352
>2vpn_A Periplasmic substrate binding protein; ectoine, hydroxyectoine, trap-transporter, periplasmic binding protein, transport; HET: 4CS; 1.55A {Halomonas elongata} PDB: 2vpo_A* 3gyy_A
Probab=30.48 E-value=63 Score=33.30 Aligned_cols=88 Identities=11% Similarity=0.020 Sum_probs=53.9
Q ss_pred CCCCChHHhhhCCCCeEEEeCchHHHHHHHhhccccccceecCCHHHHHHHHhcCCCCCceEEEEecchhHHHH-HhcCc
Q 002364 680 SPINGIESLRKSDDPIGYQEGSFAEYYLSQELNISKSRLVALRTPEDYAKALKDGPGKGGVAAVVDERPYVELF-LSSQC 758 (930)
Q Consensus 680 ~~i~s~~dL~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~i~~~~~~~~~-~~~~~ 758 (930)
.+|++++||. |+++.+..+......+ +.++.. .++. ...|...+|++ |.+|+.....+...-. ..+-.
T Consensus 130 ~pI~s~~Dlk--G~KiR~~~~~~~~~~~-~~lGa~---pv~m-~~~Evy~ALq~----G~VDg~~~~~~~~~~~~~~ev~ 198 (316)
T 2vpn_A 130 EPITSPEDFD--NKKIRTMTNPLLAETY-KAFGAT---PTPL-PWGEVYGGLQT----GIIDGQENPIFWIESGGLYEVS 198 (316)
T ss_dssp SCCCSGGGGT--TCEEEECSCHHHHHHH-HHHTCE---EEEC-CGGGHHHHHHH----TSCSEEEEEHHHHHHTTGGGTC
T ss_pred CCCCChHHhC--CCEEEeCCCHHHHHHH-HHcCCe---eeec-CHHHHHHHHHc----CCcceeeCCHHHHHhcCHHHhh
Confidence 6899999998 9999887655555555 456543 2333 56788999999 8999988654433211 11223
Q ss_pred cEEEeCccccccceeeeeCCC
Q 002364 759 SFRIVGQEFTKSGWGFAFPRD 779 (930)
Q Consensus 759 ~l~~~~~~~~~~~~~~~~~k~ 779 (930)
++....... .....+++.++
T Consensus 199 ~y~~~~~~~-~~~~~~~~n~~ 218 (316)
T 2vpn_A 199 PNLTFTSHG-WFTTAMMANQD 218 (316)
T ss_dssp CEEEECCCC-EEEEEEEEEHH
T ss_pred hhheecccc-ccceEEEEcHH
Confidence 544443322 23456666664
No 353
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=30.46 E-value=2.2e+02 Score=24.17 Aligned_cols=57 Identities=9% Similarity=-0.009 Sum_probs=38.0
Q ss_pred hHHHHHHHHhhcceEEEEEEecCCCCCCChhHHHHHHHHHHhCCceEEEEEcC--hhhHHHHHHHHHHcC
Q 002364 180 GVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVS--PSLGFQVFSVAKYLG 247 (930)
Q Consensus 180 ~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~--~~~~~~~~~~a~~~g 247 (930)
....+...+++.|..+.. ..+....+..+.+..+|+|++... ..++..++++.++..
T Consensus 16 ~~~~l~~~L~~~g~~v~~-----------~~~~~~al~~~~~~~~dlvl~D~~lp~~~g~~~~~~lr~~~ 74 (136)
T 3t6k_A 16 VAEMLELVLRGAGYEVRR-----------AASGEEALQQIYKNLPDALICDVLLPGIDGYTLCKRVRQHP 74 (136)
T ss_dssp HHHHHHHHHHHTTCEEEE-----------ESSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHSG
T ss_pred HHHHHHHHHHHCCCEEEE-----------eCCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHcCC
Confidence 456677778778876542 112344566667778999999754 456777888887643
No 354
>3okf_A 3-dehydroquinate synthase; structural genomics, center for structural genomics of infec diseases, csgid, NAD, lyase; HET: NAD; 2.50A {Vibrio cholerae o1 biovar eltor}
Probab=30.28 E-value=2.1e+02 Score=30.26 Aligned_cols=112 Identities=9% Similarity=-0.016 Sum_probs=68.1
Q ss_pred CceEeecCCchHHHHHHHHHHHhcCccEEEEEEEcCccccchHHHHHHHHhhcceEEEEEEecCCC-CCCChhHHHHHHH
Q 002364 139 PFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPE-SGVNTGYVMDLLV 217 (930)
Q Consensus 139 p~~~r~~p~~~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~-~~~~~~~~~~~l~ 217 (930)
+|-+...+....+.. +++..+.+++.+|++...+. ...+.+.+.+++.|+++... .++.+ ...+.+.+...++
T Consensus 41 ~y~I~~G~g~l~~l~----~l~~~~~~rvlIVtd~~v~~-~~~~~v~~~L~~~g~~~~~~-~~~~gE~~kt~~~v~~~~~ 114 (390)
T 3okf_A 41 SYPISIGAGLFANPA----LLSLSAKQKVVIVTNHTVAP-LYAPAIISLLDHIGCQHALL-ELPDGEQYKTLETFNTVMS 114 (390)
T ss_dssp CEEEEEETTGGGCGG----GGCCCTTCEEEEEEETTTHH-HHHHHHHHHHHHHTCEEEEE-EECSSGGGCBHHHHHHHHH
T ss_pred CCCEEEeCCHHHhHH----HHHhcCCCEEEEEECCcHHH-HHHHHHHHHHHHcCCeEEEE-EECCCcCCchHHHHHHHHH
Confidence 454555555433322 44455678999998666543 36788899999988876532 22222 0124567888888
Q ss_pred HHHhCCc---eEEEEEcCh--hhHHHHHHHHHHcCcccCCeEEEEeC
Q 002364 218 KVALMES---RVIVLHVSP--SLGFQVFSVAKYLGMMGNGYVWIATD 259 (930)
Q Consensus 218 ~l~~~~~---~viil~~~~--~~~~~~~~~a~~~g~~~~~~~~i~~~ 259 (930)
.+++.+. ++||-.+.+ -+.+.++......| ..++-|-|.
T Consensus 115 ~l~~~~~~R~d~IIAvGGGsv~D~ak~~Aa~~~rg---ip~I~IPTT 158 (390)
T 3okf_A 115 FLLEHNYSRDVVVIALGGGVIGDLVGFAAACYQRG---VDFIQIPTT 158 (390)
T ss_dssp HHHHTTCCTTCEEEEEESHHHHHHHHHHHHHBTTC---CEEEEEECS
T ss_pred HHHhcCCCcCcEEEEECCcHHhhHHHHHHHHhcCC---CCEEEeCCC
Confidence 8887766 677776655 45566665555444 345555554
No 355
>4es6_A Uroporphyrinogen-III synthase; heme-biosynthesis, cytoplasmi; 2.22A {Pseudomonas aeruginosa}
Probab=30.19 E-value=49 Score=32.81 Aligned_cols=88 Identities=14% Similarity=0.091 Sum_probs=52.7
Q ss_pred hHHHHHHHHHHH-----hcCccEEEEEEEcCccccchHHHHHHHHhhcceEEEEEEecCCCC-CCChhHHHHHHHHHHhC
Q 002364 149 SYQMTAVAEMVS-----YYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPES-GVNTGYVMDLLVKVALM 222 (930)
Q Consensus 149 ~~~~~ai~~~l~-----~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~-~~~~~~~~~~l~~l~~~ 222 (930)
...+..+++.+. ...-++|.++..+ ...+.+.+.|++.|..|.....|.... ......+ ...+...
T Consensus 113 ~~~~e~L~~~l~~~~~~~~~~~~vL~~rg~-----~~r~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~---~~~l~~~ 184 (254)
T 4es6_A 113 GDDSEALLALPAFQDSLRVHDPKVLIMRGE-----GGREFLAERLRGQGVQVDYLPLYRRRAPDYPAGEL---LARVRAE 184 (254)
T ss_dssp CCSHHHHHTCHHHHHHTCSSSCEEEEEECS-----SCCCHHHHHHHHTTCEEEEEECEEEECCCCCTTHH---HHHHHHT
T ss_pred CCCHHHHHHhHhhcccccCCCCEEEEEcCC-----ccHHHHHHHHHHCCCEEEEEeEEEeeCCCCCHHHH---HHHHHhC
Confidence 344677777664 3455788777533 234567888889998876554443220 0112233 3344455
Q ss_pred CceEEEEEcChhhHHHHHHHHHH
Q 002364 223 ESRVIVLHVSPSLGFQVFSVAKY 245 (930)
Q Consensus 223 ~~~viil~~~~~~~~~~~~~a~~ 245 (930)
+.|+|+ +.++.....+++.+.+
T Consensus 185 ~~d~v~-ftS~s~v~~~~~~~~~ 206 (254)
T 4es6_A 185 RLNGLV-VSSGQGLQNLYQLAAA 206 (254)
T ss_dssp TCCEEE-CCSHHHHHHHHHHHGG
T ss_pred CCCEEE-EcCHHHHHHHHHHhhH
Confidence 667654 6788888888877654
No 356
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=29.64 E-value=1e+02 Score=30.73 Aligned_cols=80 Identities=5% Similarity=0.010 Sum_probs=51.6
Q ss_pred CccEEEEEEEc--C--ccccchHHHHHHHHhhcceEEEEEEecCCCCCCChhHHHHHHHHHHhCCceEEEEEcChhhHHH
Q 002364 163 GWNAVSVIFVD--N--EYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQ 238 (930)
Q Consensus 163 ~w~~v~ii~~d--~--~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~ 238 (930)
.-+.|+++..+ + +|.......+.+++++.|..+..... . .........+..+.+.+.|.||+...... ..
T Consensus 7 ~s~~Igvv~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~--~~~~~~~~~~~~l~~~~vdgiIi~~~~~~-~~ 80 (288)
T 3gv0_A 7 KTNVIALVLSVDEELMGFTSQMVFGITEVLSTTQYHLVVTPH---I--HAKDSMVPIRYILETGSADGVIISKIEPN-DP 80 (288)
T ss_dssp CCCEEEEECBCCCCSSCHHHHHHHHHHHHHTTSSCEEEECCB---S--SGGGTTHHHHHHHHHTCCSEEEEESCCTT-CH
T ss_pred CCCEEEEEecCCccccHHHHHHHHHHHHHHHHcCCEEEEecC---C--cchhHHHHHHHHHHcCCccEEEEecCCCC-cH
Confidence 44678888754 2 67778889999999999988764321 1 11223344445566678999998754322 24
Q ss_pred HHHHHHHcCc
Q 002364 239 VFSVAKYLGM 248 (930)
Q Consensus 239 ~~~~a~~~g~ 248 (930)
.++.+.+.|+
T Consensus 81 ~~~~l~~~~i 90 (288)
T 3gv0_A 81 RVRFMTERNM 90 (288)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHhhCCC
Confidence 5667776664
No 357
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=29.33 E-value=1e+02 Score=31.20 Aligned_cols=79 Identities=10% Similarity=0.059 Sum_probs=52.8
Q ss_pred cEEEEEEE--cCccccchHHHHHHHHhhcceEEEEEEecCCCCCCChhHHHHHHHHHHhCCceEEEEEcChhh-HHHHHH
Q 002364 165 NAVSVIFV--DNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSL-GFQVFS 241 (930)
Q Consensus 165 ~~v~ii~~--d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~-~~~~~~ 241 (930)
.+|+++.. ++.|.......+.+++++.|..+..... . .+.......++.+...+.|.||+...... ....++
T Consensus 3 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~l~~~~~---~--~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~ 77 (306)
T 2vk2_A 3 LTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADG---Q--QKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLK 77 (306)
T ss_dssp CEEEEEECCCCSHHHHHHHHHHHHHHHHHTCEEEEEEC---T--TCHHHHHHHHHHHHHHTCSEEEECCSSSSSCHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHHHcCCEEEEeCC---C--CCHHHHHHHHHHHHHcCCCEEEEeCCChhhHHHHHH
Confidence 46777774 4567777888899999999988765321 1 12444556677777778999998754432 245667
Q ss_pred HHHHcCc
Q 002364 242 VAKYLGM 248 (930)
Q Consensus 242 ~a~~~g~ 248 (930)
.+.+.|+
T Consensus 78 ~~~~~~i 84 (306)
T 2vk2_A 78 EAKDAEI 84 (306)
T ss_dssp HHHHTTC
T ss_pred HHHHCCC
Confidence 7776664
No 358
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=29.20 E-value=54 Score=32.97 Aligned_cols=80 Identities=10% Similarity=0.019 Sum_probs=55.5
Q ss_pred CccEEEEEEEc--CccccchHHHHHHHHhhcceEEEEEEecCCCCCCChhHHHHHHHHHHhCCceEEEEEcChhhHHHHH
Q 002364 163 GWNAVSVIFVD--NEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVF 240 (930)
Q Consensus 163 ~w~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~~~ 240 (930)
.-+.|+++..+ +.|.......+.+++++.|..+..... . .+.......++.+.+.+.|.||+..... ....+
T Consensus 7 ~~~~Igvv~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~--~~~~~~~~~~~~l~~~~vdgiIi~~~~~-~~~~~ 80 (291)
T 3egc_A 7 RSNVVGLIVSDIENVFFAEVASGVESEARHKGYSVLLANT---A--EDIVREREAVGQFFERRVDGLILAPSEG-EHDYL 80 (291)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEEC---T--TCHHHHHHHHHHHHHTTCSEEEECCCSS-CCHHH
T ss_pred CCcEEEEEECCCcchHHHHHHHHHHHHHHHCCCEEEEEeC---C--CCHHHHHHHHHHHHHCCCCEEEEeCCCC-ChHHH
Confidence 34678888743 557778889999999999998775432 1 2245566677888888999999876543 33456
Q ss_pred HHHHHcCc
Q 002364 241 SVAKYLGM 248 (930)
Q Consensus 241 ~~a~~~g~ 248 (930)
+.+.+.|+
T Consensus 81 ~~~~~~~i 88 (291)
T 3egc_A 81 RTELPKTF 88 (291)
T ss_dssp HHSSCTTS
T ss_pred HHhhccCC
Confidence 66665554
No 359
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=28.93 E-value=1.4e+02 Score=29.63 Aligned_cols=79 Identities=8% Similarity=0.101 Sum_probs=52.4
Q ss_pred cEEEEEEE--cCccccchHHHHHHHHhhcceEEEEEEecCCCCCCChhHHHHHHHHHHhCCceEEEEEcCh-hhHHHHHH
Q 002364 165 NAVSVIFV--DNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSP-SLGFQVFS 241 (930)
Q Consensus 165 ~~v~ii~~--d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~-~~~~~~~~ 241 (930)
+.++++.. +++|.......+.+++++.|..+..... . .+...-...++.+...+.|.||+.... ......++
T Consensus 2 ~~Igvi~~~~~~~f~~~~~~gi~~~~~~~g~~~~~~~~---~--~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~ 76 (283)
T 2ioy_A 2 KTIGLVISTLNNPFFVTLKNGAEEKAKELGYKIIVEDS---Q--NDSSKELSNVEDLIQQKVDVLLINPVDSDAVVTAIK 76 (283)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHHTCEEEEEEC---T--TCHHHHHHHHHHHHHTTCSEEEECCSSTTTTHHHHH
T ss_pred eEEEEEecCCCCHHHHHHHHHHHHHHHhcCcEEEEecC---C--CCHHHHHHHHHHHHHcCCCEEEEeCCchhhhHHHHH
Confidence 35777764 4567778888999999999988765321 1 123344556777777889999886543 33335667
Q ss_pred HHHHcCc
Q 002364 242 VAKYLGM 248 (930)
Q Consensus 242 ~a~~~g~ 248 (930)
.+.+.|.
T Consensus 77 ~~~~~~i 83 (283)
T 2ioy_A 77 EANSKNI 83 (283)
T ss_dssp HHHHTTC
T ss_pred HHHHCCC
Confidence 7777664
No 360
>3grf_A Ornithine carbamoyltransferase; ornithine transcarbamoylase, arginine degradation pathway, giardia lamblia, drug target; 2.00A {Giardia intestinalis}
Probab=28.67 E-value=4.9e+02 Score=26.66 Aligned_cols=131 Identities=15% Similarity=0.151 Sum_probs=74.1
Q ss_pred EEEEEEeeCCCcchhhHHHHHHHHHHHHhcCCCCCCCCEEE--EEEecCCCChHHHHHHHHHHHhc--CcEEEEcCCChh
Q 002364 32 VNVGALFTLDSTIGRVAKIAIEEAVKDVNSNSSILHGTKLN--ITMQSSNCSGFIGMVEALRFMET--DIVAIIGPQCST 107 (930)
Q Consensus 32 i~IG~i~~~s~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~--l~~~D~~~~~~~a~~~a~~li~~--~v~aiiGp~~s~ 107 (930)
-.|+.+|...+ .+.+..|+.|+.++ +|..+. +.. +++-.-...+....+.++. .+.++=.+. .
T Consensus 45 k~la~lF~e~S---TRTR~SFE~A~~~L-------Gg~~i~~~l~~-~ss~~kgEsl~DTarvls~~~D~iviR~~~-~- 111 (328)
T 3grf_A 45 KTLLAFFAKPS---LRTRVSLETAMTRL-------GGHAIYYELGA-NSNVGGKETVQDTAEVFSRMVDICTARLAT-K- 111 (328)
T ss_dssp CEEEEEESSCC---HHHHHHHHHHHHHH-------TCEEEEEEC-----------CHHHHHHHHTTTCSEEEEECSS-H-
T ss_pred CEEEEEecCCC---chHHHHHHHHHHHC-------CCeEEccccCc-cccCCCCCCHHHHHHHHHhhCCEEEEecCC-h-
Confidence 46889998766 47899999999998 244444 433 4443333344455555655 343333442 2
Q ss_pred HHHHHHHhhccCCCcEEecccCCCCCCCCCCCceEeecCCchHHHHHHHHHH---HhcC----------ccEEEEEEEcC
Q 002364 108 VAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMV---SYYG----------WNAVSVIFVDN 174 (930)
Q Consensus 108 ~~~~v~~~~~~~~iP~is~~a~~~~l~~~~~p~~~r~~p~~~~~~~ai~~~l---~~~~----------w~~v~ii~~d~ 174 (930)
..+..+++..++|+|.- .+. ...| .+++++++ +++| ..+|+++. |
T Consensus 112 --~~~~~lA~~~~vPVINa--g~~----~~HP------------tQaLaDl~Ti~e~~g~~~~~~~~l~gl~va~vG--D 169 (328)
T 3grf_A 112 --EMMREMAQHASVPCINA--LDD----FGHP------------LQMVCDFMTIKEKFTAAGEFSNGFKGIKFAYCG--D 169 (328)
T ss_dssp --HHHHHHHHHCSSCEEES--SCS----SCCH------------HHHHHHHHHHHHHHHHTTCCTTTGGGCCEEEES--C
T ss_pred --hHHHHHHHhCCCCEEeC--CCC----CCCc------------HHHHHHHHHHHHHhCCccccccccCCcEEEEeC--C
Confidence 33455666778999973 221 1122 46677763 3444 35666664 3
Q ss_pred ccccchHHHHHHHHhhcceEEEEE
Q 002364 175 EYGRNGVSALNDKLAERRCRISYK 198 (930)
Q Consensus 175 ~~g~~~~~~l~~~l~~~g~~v~~~ 198 (930)
.-. .....+..++...|.++...
T Consensus 170 ~~~-~va~Sl~~~~~~~G~~v~~~ 192 (328)
T 3grf_A 170 SMN-NVTYDLMRGCALLGMECHVC 192 (328)
T ss_dssp CSS-HHHHHHHHHHHHHTCEEEEE
T ss_pred CCc-chHHHHHHHHHHcCCEEEEE
Confidence 322 57788888888889887654
No 361
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=28.60 E-value=2.5e+02 Score=26.52 Aligned_cols=87 Identities=7% Similarity=-0.060 Sum_probs=55.4
Q ss_pred cEEEEEEEcCccccchHHHHHHHHhhcceEEEEEEecCCCCCCChhHHHHHHHHHHhCCceEEEEEcCh----hhHHHHH
Q 002364 165 NAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSP----SLGFQVF 240 (930)
Q Consensus 165 ~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~----~~~~~~~ 240 (930)
.+|.+.....+.-.-+...+...++..|.++.+-.. . ......+..+++.++|+|.+.+.. .....++
T Consensus 89 ~~vll~~~~gd~H~iG~~~va~~l~~~G~~v~~LG~---~-----vp~~~l~~~~~~~~~d~v~lS~~~~~~~~~~~~~i 160 (210)
T 1y80_A 89 GKIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLGV---D-----IEPGKFVEAVKKYQPDIVGMSALLTTTMMNMKSTI 160 (210)
T ss_dssp CEEEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECCS---S-----BCHHHHHHHHHHHCCSEEEEECCSGGGTHHHHHHH
T ss_pred CEEEEEeCCCcccHHHHHHHHHHHHHCCCEEEECCC---C-----CCHHHHHHHHHHcCCCEEEEeccccccHHHHHHHH
Confidence 466666655555555677888888999999875321 1 123344555666689999997653 3566677
Q ss_pred HHHHHcCcccCCeEEEEeC
Q 002364 241 SVAKYLGMMGNGYVWIATD 259 (930)
Q Consensus 241 ~~a~~~g~~~~~~~~i~~~ 259 (930)
++.++.|....-.+++++.
T Consensus 161 ~~l~~~~~~~~~~v~vGG~ 179 (210)
T 1y80_A 161 DALIAAGLRDRVKVIVGGA 179 (210)
T ss_dssp HHHHHTTCGGGCEEEEEST
T ss_pred HHHHhcCCCCCCeEEEECC
Confidence 8888877533334555543
No 362
>2nr1_A NR1 M2, M2; receptor, signal, postsynaptic membrane; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=28.18 E-value=19 Score=21.38 Aligned_cols=17 Identities=24% Similarity=0.573 Sum_probs=13.6
Q ss_pred cchhhhHHHHHHhhhcC
Q 002364 622 QVITILWFSLSTLFFAH 638 (930)
Q Consensus 622 ~~~~~~~~~~~~l~~~~ 638 (930)
.+..++||+|++++..+
T Consensus 8 ~l~aa~wF~WGvllnsg 24 (27)
T 2nr1_A 8 TLSSAMWFSWGVLLNSG 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred ehhhhHHHhhHhheecc
Confidence 46789999999988543
No 363
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=27.95 E-value=1.6e+02 Score=30.34 Aligned_cols=78 Identities=12% Similarity=0.037 Sum_probs=54.7
Q ss_pred cEEEEEEE--cCccccchHHHHHHHHhhcceEEEEEEecCCCCCCChhHHHHHHHHHHhCCceEEEEEcChhhHHHHHHH
Q 002364 165 NAVSVIFV--DNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSV 242 (930)
Q Consensus 165 ~~v~ii~~--d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~~~~~ 242 (930)
+.|+++.. +++|.......+.+.+++.|..+..... . .+.......++.+...+.|.||+....... ..++.
T Consensus 69 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~----~~~~~~~~~i~~l~~~~vdGiIi~~~~~~~-~~~~~ 142 (344)
T 3kjx_A 69 NLVAVIIPSLSNMVFPEVLTGINQVLEDTELQPVVGVT-D----YLPEKEEKVLYEMLSWRPSGVIIAGLEHSE-AARAM 142 (344)
T ss_dssp SEEEEEESCSSSSSHHHHHHHHHHHHTSSSSEEEEEEC-T----TCHHHHHHHHHHHHTTCCSEEEEECSCCCH-HHHHH
T ss_pred CEEEEEeCCCCcHHHHHHHHHHHHHHHHCCCEEEEEeC-C----CCHHHHHHHHHHHHhCCCCEEEEECCCCCH-HHHHH
Confidence 46888874 3667778889999999999998764321 1 124555667788888899999997654332 56667
Q ss_pred HHHcCc
Q 002364 243 AKYLGM 248 (930)
Q Consensus 243 a~~~g~ 248 (930)
+.+.|+
T Consensus 143 l~~~~i 148 (344)
T 3kjx_A 143 LDAAGI 148 (344)
T ss_dssp HHHCSS
T ss_pred HHhCCC
Confidence 777664
No 364
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=27.94 E-value=91 Score=30.90 Aligned_cols=77 Identities=5% Similarity=0.012 Sum_probs=52.4
Q ss_pred ccEEEEEEEc--CccccchHHHHHHHHhhcceEEEEEEecCCCCCCChhHHHHHHHHHHhCCceEEEEEcChhhHHHHHH
Q 002364 164 WNAVSVIFVD--NEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFS 241 (930)
Q Consensus 164 w~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~~~~ 241 (930)
-+.|+++..+ ++|.......+.+++++.|..+..... . .+.......++.+.+.+.|.||+.... ...++
T Consensus 8 ~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~---~--~~~~~~~~~~~~l~~~~~dgiIi~~~~---~~~~~ 79 (277)
T 3e61_A 8 SKLIGLLLPDMSNPFFTLIARGVEDVALAHGYQVLIGNS---D--NDIKKAQGYLATFVSHNCTGMISTAFN---ENIIE 79 (277)
T ss_dssp --CEEEEESCTTSHHHHHHHHHHHHHHHHTTCCEEEEEC---T--TCHHHHHHHHHHHHHTTCSEEEECGGG---HHHHH
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEeC---C--CCHHHHHHHHHHHHhCCCCEEEEecCC---hHHHH
Confidence 3568888753 667778889999999999988764321 1 224555667788888899999997632 33466
Q ss_pred -HHHHcCc
Q 002364 242 -VAKYLGM 248 (930)
Q Consensus 242 -~a~~~g~ 248 (930)
.+.+.|+
T Consensus 80 ~~l~~~~i 87 (277)
T 3e61_A 80 NTLTDHHI 87 (277)
T ss_dssp HHHHHC-C
T ss_pred HHHHcCCC
Confidence 6777664
No 365
>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}
Probab=27.76 E-value=1.1e+02 Score=31.25 Aligned_cols=84 Identities=11% Similarity=0.138 Sum_probs=55.7
Q ss_pred CCeEEE--eCchHHHHHHHhhccccccceecCCHHHHHHHHhcCCCCCceEEEEecch---------hHHHHHhcCccEE
Q 002364 693 DPIGYQ--EGSFAEYYLSQELNISKSRLVALRTPEDYAKALKDGPGKGGVAAVVDERP---------YVELFLSSQCSFR 761 (930)
Q Consensus 693 ~~v~~~--~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~i~~~~---------~~~~~~~~~~~l~ 761 (930)
.+|+++ .|++.+.-..+.+.-+...++++.+.++.++++.+ |+++..+.... .++.+ .++.+++
T Consensus 7 ~~VaylGp~GtfS~~Aa~~~~~~~~~~~~p~~s~~~vf~aV~~----g~~d~gVvPiENS~~G~V~~tlD~L-~~~~~l~ 81 (313)
T 3mwb_A 7 VTYTFLGPQGTFTEAALMQVPGAADATRIPCTNVNTALERVRA----GEADAAMVPIENSVEGGVTATLDAI-ATGQELR 81 (313)
T ss_dssp CEEEEESSTTSHHHHHHTTSTTGGGSEEEEESSHHHHHHHHHT----TSCSEEEEEEESCTTCCHHHHHHHT-TSSSCCE
T ss_pred cEEEEECCCCcHHHHHHHHHhhcCCccEEecCCHHHHHHHHHc----CCCCeeEEEEeecCCCccHHHHHHh-hCCCCeE
Confidence 457886 57777766644332234567889999999999999 78775554321 22222 3334789
Q ss_pred EeCccccccceeeeeCCCCc
Q 002364 762 IVGQEFTKSGWGFAFPRDSP 781 (930)
Q Consensus 762 ~~~~~~~~~~~~~~~~k~sp 781 (930)
++++.+.+...++...++..
T Consensus 82 IvgE~~l~I~h~Ll~~~g~~ 101 (313)
T 3mwb_A 82 IIREALVPITFVLVARPGVE 101 (313)
T ss_dssp EEEEEEEECCCEEEECTTCC
T ss_pred EEEEEEEeeeEEEEcCCCCC
Confidence 99998888877777666543
No 366
>4a29_A Engineered retro-aldol enzyme RA95.0; de novo protein, engineered enzyme, retro-aldolase, directed evolution; HET: 3NK MLT; 1.10A {Synthetic construct} PDB: 4a2s_A* 4a2r_A* 3tc7_A 3tc6_A 3nl8_A* 3nxf_A* 3o6y_X 3ud6_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 1a53_A* 1lbf_A* 1lbl_A* 3nyz_A 3nz1_A* 3uy7_A 3uxd_A* 3uxa_A* ...
Probab=27.36 E-value=1.8e+02 Score=28.59 Aligned_cols=84 Identities=13% Similarity=0.051 Sum_probs=58.3
Q ss_pred HHHHHHhcCccEEEEEEEcCccccchHHHHHHHHhhcceEEEEEEecCCCCCCChhHHHHHHHHHHhCCceEEEEEcC--
Q 002364 155 VAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVS-- 232 (930)
Q Consensus 155 i~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~-- 232 (930)
++++.+ -|-.-+.+++ |..|..+..+.+++.-+...+.|-....+ .+.+ ++.+.+..++|.|++.+.
T Consensus 69 iA~~~~-~GA~aiSVLT-d~~~F~Gs~~~L~~vr~~v~lPvLrKDFi-------id~y--QI~eAr~~GADaILLI~a~L 137 (258)
T 4a29_A 69 YAKFME-RYAVGLSITT-EEKYFNGSYETLRKIASSVSIPILMSDFI-------VKES--QIDDAYNLGADTVLLIVKIL 137 (258)
T ss_dssp HHHHHT-TTCSEEEEEC-CSTTTCCCHHHHHHHHTTCSSCEEEESCC-------CSHH--HHHHHHHHTCSEEEEEGGGS
T ss_pred HHHHHh-CCCeEEEEeC-CCCCCCCCHHHHHHHHHhcCCCEeecccc-------ccHH--HHHHHHHcCCCeeehHHhhc
Confidence 445554 3667777665 66688888888888766667776544322 1223 466667789999988644
Q ss_pred -hhhHHHHHHHHHHcCcc
Q 002364 233 -PSLGFQVFSVAKYLGMM 249 (930)
Q Consensus 233 -~~~~~~~~~~a~~~g~~ 249 (930)
..+...+...|.++||.
T Consensus 138 ~~~~l~~l~~~A~~lGl~ 155 (258)
T 4a29_A 138 TERELESLLEYARSYGME 155 (258)
T ss_dssp CHHHHHHHHHHHHHTTCC
T ss_pred CHHHHHHHHHHHHHHhHH
Confidence 46678899999999985
No 367
>3dnf_A ISPH, LYTB, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; trilobal strucure, open alpha/beta, iron, iron-sulfur, isopr biosynthesis; 1.65A {Aquifex aeolicus}
Probab=27.29 E-value=1.1e+02 Score=31.06 Aligned_cols=52 Identities=21% Similarity=0.320 Sum_probs=42.6
Q ss_pred EEEecCCCChHHHHHHHHHHHhc--CcEEEEcCCChhHHHHHHHhhccCCCcEE
Q 002364 73 ITMQSSNCSGFIGMVEALRFMET--DIVAIIGPQCSTVAHIVSYVSNELQVPLL 124 (930)
Q Consensus 73 l~~~D~~~~~~~a~~~a~~li~~--~v~aiiGp~~s~~~~~v~~~~~~~~iP~i 124 (930)
+...|+=|...+-.+.+.+-+.. .+..|||...|+.+.-+.+++.+.+.|..
T Consensus 186 ~~~~~tIC~AT~~RQ~av~~la~~~D~miVVGg~nSSNT~rL~eia~~~~~~ty 239 (297)
T 3dnf_A 186 VKVINTICNATSLRQESVKKLAPEVDVMIIIGGKNSGNTRRLYYISKELNPNTY 239 (297)
T ss_dssp EEEECCCCSHHHHHHHHHHHHGGGSSEEEEESCTTCHHHHHHHHHHHHHCSSEE
T ss_pred CCCCCCccHHHHHHHHHHHHHHhhCCEEEEECCCCCchhHHHHHHHHhcCCCEE
Confidence 45789999988877766655544 78888999999999999999999988754
No 368
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=26.94 E-value=2.5e+02 Score=28.12 Aligned_cols=111 Identities=11% Similarity=-0.001 Sum_probs=63.4
Q ss_pred EEEEEEeeCCCcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCChhH---
Q 002364 32 VNVGALFTLDSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCSTV--- 108 (930)
Q Consensus 32 i~IG~i~~~s~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~s~~--- 108 (930)
=+||++...+...+.....+++-|+++. |.++......+ ...+.+++.+++. ++.||+-+.+...
T Consensus 141 ~~I~~i~~~~~~~~~~r~~g~~~al~~~--------gi~~~~~~~~~---~~~~~~~~~~l~~-~~dai~~~~D~~a~g~ 208 (302)
T 2qh8_A 141 KSIGVVYNPGEANAVSLMELLKLSAAKH--------GIKLVEATALK---SADVQSATQAIAE-KSDVIYALIDNTVASA 208 (302)
T ss_dssp CEEEEEECTTCHHHHHHHHHHHHHHHHT--------TCEEEEEECSS---GGGHHHHHHHHGG-GCSEEEECSCHHHHTT
T ss_pred cEEEEEecCCCcchHHHHHHHHHHHHHc--------CCEEEEEecCC---hHHHHHHHHHHhc-cCCEEEECCcHhHHHH
Confidence 4678877654333444556777777652 34444433322 2334455566654 7888887665533
Q ss_pred HHHHHHhhccCCCcEEecccCCCCCCCCCCCceEeecCCchHHHHHHHHHH
Q 002364 109 AHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMV 159 (930)
Q Consensus 109 ~~~v~~~~~~~~iP~is~~a~~~~l~~~~~p~~~r~~p~~~~~~~ai~~~l 159 (930)
..++...+.+.++|++++.... +. .|-+.....+...+++..++++
T Consensus 209 ~~~l~~~~~~~~i~vig~d~~~--~~---~~~Lttv~~~~~~~G~~Aa~~l 254 (302)
T 2qh8_A 209 IEGMIVAANQAKTPVFGAATSY--VE---RGAIASLGFDYYQIGVQTADYV 254 (302)
T ss_dssp HHHHHHHHHHTTCCEEESSHHH--HH---TTCSEEEECCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEECCHHH--Hh---CCcEEEEeCCHHHHHHHHHHHH
Confidence 2234455556899999874321 11 1445555677777777777764
No 369
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=26.92 E-value=1.1e+02 Score=30.48 Aligned_cols=79 Identities=5% Similarity=-0.093 Sum_probs=52.0
Q ss_pred ccEEEEEEE--cCccccchHHHHHHHHhhcceEEEEEEecCCCCCCChhHHHH---HHHHHHhCCceEEEEEcChhhHHH
Q 002364 164 WNAVSVIFV--DNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMD---LLVKVALMESRVIVLHVSPSLGFQ 238 (930)
Q Consensus 164 w~~v~ii~~--d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~---~l~~l~~~~~~viil~~~~~~~~~ 238 (930)
-..|+++.. +++|.......+.+++++.|..+..... . .+...... .++.+.+.+.|.||+...... ..
T Consensus 8 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~--~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~-~~ 81 (290)
T 2rgy_A 8 LGIIGLFVPTFFGSYYGTILKQTDLELRAVHRHVVVATG---C--GESTPREQALEAVRFLIGRDCDGVVVISHDLH-DE 81 (290)
T ss_dssp CCEEEEECSCSCSHHHHHHHHHHHHHHHHTTCEEEEECC---C--SSSCHHHHHHHHHHHHHHTTCSEEEECCSSSC-HH
T ss_pred CCeEEEEeCCCCCchHHHHHHHHHHHHHHCCCEEEEEeC---C--CchhhhhhHHHHHHHHHhcCccEEEEecCCCC-HH
Confidence 357888774 3567778889999999999988764321 1 11233344 677777788999998754333 34
Q ss_pred HHHHHHHcCc
Q 002364 239 VFSVAKYLGM 248 (930)
Q Consensus 239 ~~~~a~~~g~ 248 (930)
.++.+.+.|.
T Consensus 82 ~~~~l~~~~i 91 (290)
T 2rgy_A 82 DLDELHRMHP 91 (290)
T ss_dssp HHHHHHHHCS
T ss_pred HHHHHhhcCC
Confidence 5566666564
No 370
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=26.87 E-value=1.1e+02 Score=30.18 Aligned_cols=78 Identities=9% Similarity=0.020 Sum_probs=51.9
Q ss_pred cEEEEEEE--cCccccchHHHHHHHHhhcceEEEEEEecCCCCCCChhHHHHHHHHHHhCCceEEEEEcChhhHHHHHHH
Q 002364 165 NAVSVIFV--DNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSV 242 (930)
Q Consensus 165 ~~v~ii~~--d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~~~~~ 242 (930)
+.|+++.. +++|.......+.+++++.|..+.... .. .+.......++.+...+.|.||+...... ...++.
T Consensus 4 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~---~~--~~~~~~~~~~~~l~~~~vdgii~~~~~~~-~~~~~~ 77 (275)
T 3d8u_A 4 YSIALIIPSLFEKACAHFLPSFQQALNKAGYQLLLGY---SD--YSIEQEEKLLSTFLESRPAGVVLFGSEHS-QRTHQL 77 (275)
T ss_dssp CEEEEEESCSSCHHHHHHHHHHHHHHHHTSCEECCEE---CT--TCHHHHHHHHHHHHTSCCCCEEEESSCCC-HHHHHH
T ss_pred eEEEEEeCCCccccHHHHHHHHHHHHHHCCCEEEEEc---CC--CCHHHHHHHHHHHHhcCCCEEEEeCCCCC-HHHHHH
Confidence 46788774 356777788999999999998865432 11 12444556678888888999888754322 245666
Q ss_pred HHHcCc
Q 002364 243 AKYLGM 248 (930)
Q Consensus 243 a~~~g~ 248 (930)
+.+.|.
T Consensus 78 l~~~~i 83 (275)
T 3d8u_A 78 LEASNT 83 (275)
T ss_dssp HHHHTC
T ss_pred HHhCCC
Confidence 666554
No 371
>3out_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, MURI, cell envelope; HET: MSE DGL; 1.65A {Francisella tularensis subsp}
Probab=26.77 E-value=1.1e+02 Score=30.60 Aligned_cols=40 Identities=18% Similarity=0.183 Sum_probs=29.1
Q ss_pred HHHHHHHHhcCcEEEEcCCChhHHHHHHHhhccC-CCcEEe
Q 002364 86 MVEALRFMETDIVAIIGPQCSTVAHIVSYVSNEL-QVPLLS 125 (930)
Q Consensus 86 ~~~a~~li~~~v~aiiGp~~s~~~~~v~~~~~~~-~iP~is 125 (930)
.+.+..|.+.++.+|+-+-.+..+.++..+-+.. ++|+|.
T Consensus 59 ~~~~~~L~~~g~~~iVIACNTa~~~al~~lr~~~~~iPvig 99 (268)
T 3out_A 59 AQTAKFLIDQEVKAIIIACNTISAIAKDIVQEIAKAIPVID 99 (268)
T ss_dssp HHHHHHHHHTTCSEEEECCHHHHHHHHHHHHHHHTTSCEEE
T ss_pred HHHHHHHHHCCCCEEEEeCCChHHHHHHHHHHhcCCCCEEe
Confidence 3444455566999999877676665666777777 899996
No 372
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=26.59 E-value=1.3e+02 Score=30.95 Aligned_cols=79 Identities=9% Similarity=-0.040 Sum_probs=53.3
Q ss_pred cEEEEEEE--cCccccchHHHHHHHHhhcceEEEEEEecCCCCCCChhHHHHHHHHHHhCC--ceEEEEEcChhh-HHHH
Q 002364 165 NAVSVIFV--DNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALME--SRVIVLHVSPSL-GFQV 239 (930)
Q Consensus 165 ~~v~ii~~--d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~--~~viil~~~~~~-~~~~ 239 (930)
..|+++.. +++|.......+.+++++.|..+..... . .+.......++.+.+.+ .|.||+...... ....
T Consensus 6 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~l~~~~~---~--~~~~~~~~~i~~l~~~~~~vdgiIi~~~~~~~~~~~ 80 (332)
T 2rjo_A 6 TTLACSFRSLTNPYYTAFNKGAQSFAKSVGLPYVPLTT---E--GSSEKGIADIRALLQKTGGNLVLNVDPNDSADARVI 80 (332)
T ss_dssp CEEEEEESCTTSHHHHHHHHHHHHHHHHHTCCEEEEEC---T--TCHHHHHHHHHHHHHHTTTCEEEEECCSSHHHHHHH
T ss_pred cEEEEEecCCCcHHHHHHHHHHHHHHHHcCCEEEEecC---C--CCHHHHHHHHHHHHHCCCCCCEEEEeCCCHHHHHHH
Confidence 46888874 4567777888999999999988765421 1 12344456677777777 999998755433 3356
Q ss_pred HHHHHHcCc
Q 002364 240 FSVAKYLGM 248 (930)
Q Consensus 240 ~~~a~~~g~ 248 (930)
++.+.+.|+
T Consensus 81 ~~~~~~~~i 89 (332)
T 2rjo_A 81 VEACSKAGA 89 (332)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHCCC
Confidence 777776664
No 373
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=26.43 E-value=96 Score=31.20 Aligned_cols=78 Identities=6% Similarity=-0.013 Sum_probs=52.5
Q ss_pred cEEEEEEE-------cCccccchHHHHHHHHhhcceEEEEEEecCCCCCCChhHHHHHHHHHHhCCceEEEEEcChhhHH
Q 002364 165 NAVSVIFV-------DNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGF 237 (930)
Q Consensus 165 ~~v~ii~~-------d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~ 237 (930)
+.|+++.. ++.|.......+.+++++.|..+... ... .+...-...++.+.+.+.|.||+...... .
T Consensus 8 ~~Igvi~~~~~~~~~~~~f~~~~~~gi~~~a~~~g~~~~~~---~~~--~~~~~~~~~~~~l~~~~vdGiI~~~~~~~-~ 81 (295)
T 3hcw_A 8 YKIGLVLKGSEEPIRLNPFYINVLLGISETCNQHGYGTQTT---VSN--NMNDLMDEVYKMIKQRMVDAFILLYSKEN-D 81 (295)
T ss_dssp CEEEEECSCCCHHHHSCHHHHHHHHHHHHHHHTTTCEEEEC---CCC--SHHHHHHHHHHHHHTTCCSEEEESCCCTT-C
T ss_pred cEEEEEeecCCcccccChHHHHHHHHHHHHHHHCCCEEEEE---cCC--CChHHHHHHHHHHHhCCcCEEEEcCcccC-h
Confidence 56888762 46677788899999999999887632 212 12334456677788889999998754322 2
Q ss_pred HHHHHHHHcCc
Q 002364 238 QVFSVAKYLGM 248 (930)
Q Consensus 238 ~~~~~a~~~g~ 248 (930)
..++.+.+.|+
T Consensus 82 ~~~~~l~~~~i 92 (295)
T 3hcw_A 82 PIKQMLIDESM 92 (295)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHhCCC
Confidence 45666766664
No 374
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=26.41 E-value=3.2e+02 Score=26.06 Aligned_cols=87 Identities=6% Similarity=-0.044 Sum_probs=56.0
Q ss_pred cEEEEEEEcCccccchHHHHHHHHhhcceEEEEEEecCCCCCCChhHHHHHHHHHHhCCceEEEE--EcCh----hhHHH
Q 002364 165 NAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVL--HVSP----SLGFQ 238 (930)
Q Consensus 165 ~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil--~~~~----~~~~~ 238 (930)
.+|.+.....+.-.-+..-+...++..|.+|.+-.. + ......++.+++.++|+|.+ .+.. .....
T Consensus 93 ~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~---~-----vp~e~iv~~~~~~~~d~v~l~~S~l~~~~~~~~~~ 164 (215)
T 3ezx_A 93 GLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGV---D-----VLNENVVEEAAKHKGEKVLLVGSALMTTSMLGQKD 164 (215)
T ss_dssp CEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCS---S-----CCHHHHHHHHHHTTTSCEEEEEECSSHHHHTHHHH
T ss_pred CeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCC---C-----CCHHHHHHHHHHcCCCEEEEEchhcccCcHHHHHH
Confidence 355555545555555677788899999999875321 1 12345567777789999999 5543 34566
Q ss_pred HHHHHHHcCcccCCeEEEEeC
Q 002364 239 VFSVAKYLGMMGNGYVWIATD 259 (930)
Q Consensus 239 ~~~~a~~~g~~~~~~~~i~~~ 259 (930)
++++.++.|....-.+|+++.
T Consensus 165 ~i~~l~~~~~~~~v~v~vGG~ 185 (215)
T 3ezx_A 165 LMDRLNEEKLRDSVKCMFGGA 185 (215)
T ss_dssp HHHHHHHTTCGGGSEEEEESS
T ss_pred HHHHHHHcCCCCCCEEEEECC
Confidence 788888888643334666653
No 375
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=26.09 E-value=2.2e+02 Score=28.91 Aligned_cols=80 Identities=5% Similarity=-0.015 Sum_probs=52.8
Q ss_pred ccEEEEEEEc-CccccchHHHHHHHHhhc-ceEEEEEEecCCCCCCChhHHHHHHHHHHhCCceEEEEEcChhh-HHHHH
Q 002364 164 WNAVSVIFVD-NEYGRNGVSALNDKLAER-RCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSL-GFQVF 240 (930)
Q Consensus 164 w~~v~ii~~d-~~~g~~~~~~l~~~l~~~-g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~-~~~~~ 240 (930)
-..|+++..+ ++|.......+.+++++. |+.+..... . .+.......++.+...+.|.||+...... ....+
T Consensus 6 ~~~Igvi~~~~~~~~~~~~~gi~~~a~~~~g~~l~i~~~---~--~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~ 80 (325)
T 2x7x_A 6 HFRIGVAQCSDDSWRHKMNDEILREAMFYNGVSVEIRSA---G--DDNSKQAEDVHYFMDEGVDLLIISANEAAPMTPIV 80 (325)
T ss_dssp CCEEEEEESCCSHHHHHHHHHHHHHHTTSSSCEEEEEEC---T--TCHHHHHHHHHHHHHTTCSEEEECCSSHHHHHHHH
T ss_pred CeEEEEEecCCCHHHHHHHHHHHHHHHHcCCcEEEEeCC---C--CCHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHH
Confidence 3577877643 445566778888899888 988765321 1 12444556677777788999998755433 24567
Q ss_pred HHHHHcCc
Q 002364 241 SVAKYLGM 248 (930)
Q Consensus 241 ~~a~~~g~ 248 (930)
+.+.+.|+
T Consensus 81 ~~~~~~~i 88 (325)
T 2x7x_A 81 EEAYQKGI 88 (325)
T ss_dssp HHHHHTTC
T ss_pred HHHHHCCC
Confidence 77776664
No 376
>4f2g_A Otcase 1, ornithine carbamoyltransferase 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}
Probab=26.03 E-value=4.7e+02 Score=26.54 Aligned_cols=132 Identities=11% Similarity=0.141 Sum_probs=77.5
Q ss_pred EEEEEEeeCCCcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCChHHHHHHHHHHHhc--CcEEEEcCCChhHH
Q 002364 32 VNVGALFTLDSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMET--DIVAIIGPQCSTVA 109 (930)
Q Consensus 32 i~IG~i~~~s~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~--~v~aiiGp~~s~~~ 109 (930)
-.|+.+|...+ ...+..|+.|+.++ +|..+.+...+++-.-...+....+.++. .+.++=.+. .
T Consensus 46 k~la~lF~e~S---TRTR~SFE~A~~~L-------Gg~~i~l~~~~ss~~kgEsl~DTarvls~~~D~iviR~~~----~ 111 (309)
T 4f2g_A 46 RTLAMIFEKSS---TRTRLSFEAGIFQL-------GGHAVFMSTRDTQLGRGEPVEDSAQVISRMVDIIMIRTFE----Q 111 (309)
T ss_dssp CEEEEEESSCC---HHHHHHHHHHHHHT-------TCEEEEECCSSCEETBEECHHHHHHHHHHHCSEEEEECSC----H
T ss_pred ceEEEEecCCC---hhhHhhHHHHHHHc-------CCeEEEcCcccccCCCCCCHHHHHHHHHHhCCEEEEecCC----H
Confidence 46899998776 47899999999987 34444443333322212223333333333 344444543 2
Q ss_pred HHHHHhhccCCCcEEecccCCCCCCCCCCCceEeecCCchHHHHHHHHHH---Hhc---CccEEEEEEEcCccccchHHH
Q 002364 110 HIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMV---SYY---GWNAVSVIFVDNEYGRNGVSA 183 (930)
Q Consensus 110 ~~v~~~~~~~~iP~is~~a~~~~l~~~~~p~~~r~~p~~~~~~~ai~~~l---~~~---~w~~v~ii~~d~~~g~~~~~~ 183 (930)
..+..+++..++|+|.-+ ++ ...| .+++++++ +++ ...+|+++.+ +......
T Consensus 112 ~~~~~lA~~~~vPVINag-~~-----~~HP------------tQaLaDl~Ti~e~~g~l~glkva~vGD----~~~va~S 169 (309)
T 4f2g_A 112 DIIQRFAENSRVPVINGL-TN-----EYHP------------CQVLADIFTYYEHRGPIRGKTVAWVGD----ANNMLYT 169 (309)
T ss_dssp HHHHHHHHTCSSCEEEEE-CS-----SCCH------------HHHHHHHHHHHHHHSCCTTCEEEEESC----CCHHHHH
T ss_pred HHHHHHHHhCCCCEEECC-CC-----ccCc------------HHHHHHHHHHHHHhCCCCCCEEEEECC----CcchHHH
Confidence 344556677789999743 21 1122 46777763 333 4567777753 2457788
Q ss_pred HHHHHhhcceEEEEEE
Q 002364 184 LNDKLAERRCRISYKS 199 (930)
Q Consensus 184 l~~~l~~~g~~v~~~~ 199 (930)
+..++...|.++....
T Consensus 170 l~~~~~~~G~~v~~~~ 185 (309)
T 4f2g_A 170 WIQAARILDFKLQLST 185 (309)
T ss_dssp HHHHHHHHTCEEEEEC
T ss_pred HHHHHHHcCCEEEEEC
Confidence 8888888898876543
No 377
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=25.74 E-value=2e+02 Score=24.37 Aligned_cols=56 Identities=13% Similarity=0.025 Sum_probs=38.5
Q ss_pred hHHHHHHHHhhcceEEEEEEecCCCCCCChhHHHHHHHHHHhCCceEEEEEcC--hhhHHHHHHHHHHc
Q 002364 180 GVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVS--PSLGFQVFSVAKYL 246 (930)
Q Consensus 180 ~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~--~~~~~~~~~~a~~~ 246 (930)
....+.+.+++.|..+.. ..+....+..+++..+|+|++... ..++..++++.++.
T Consensus 18 ~~~~l~~~l~~~g~~v~~-----------~~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~ 75 (140)
T 3grc_A 18 IARLLNLMLEKGGFDSDM-----------VHSAAQALEQVARRPYAAMTVDLNLPDQDGVSLIRALRRD 75 (140)
T ss_dssp HHHHHHHHHHHTTCEEEE-----------ECSHHHHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHHTS
T ss_pred HHHHHHHHHHHCCCeEEE-----------ECCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhC
Confidence 456677788888877532 123445566677788999999644 45677888888863
No 378
>2qip_A Protein of unknown function VPA0982; APC85975, vibrio parahaemolyticus RIMD 2210633, STR genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus}
Probab=25.71 E-value=2.8e+02 Score=24.99 Aligned_cols=95 Identities=7% Similarity=-0.134 Sum_probs=56.7
Q ss_pred HHHHHHHHhcCccEEEEEEEcCccccchHHHHHHHHhhcceEEEEEEec--CCCCCCChhHHHHHHHHHH-hCCceEEEE
Q 002364 153 TAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGI--PPESGVNTGYVMDLLVKVA-LMESRVIVL 229 (930)
Q Consensus 153 ~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~--~~~~~~~~~~~~~~l~~l~-~~~~~viil 229 (930)
..+.+.+...+--..+..|.+ ..+......+.+++...|+++...... ..+...+..|..=.+.-+. ....|.+++
T Consensus 36 ~~l~~~~~~~g~l~~~~~Y~~-~~~~~~~~~~~~~L~~~g~~v~~~p~~~~~~~~~k~~~Dv~laiD~~~~a~~~d~~vL 114 (165)
T 2qip_A 36 NQFWYVATQEKEVVSAKAYAI-ASNDPKQRQFHHILRGVGFEVMLKPYIQRRDGSAKGDWDVGITLDAIEIAPDVDRVIL 114 (165)
T ss_dssp HHHHHHHTTTEEEEEEEEEEC-CCCCHHHHHHHHHHHHHTCEEEECCCCCCSSCCCSCCCHHHHHHHHHHHGGGCSEEEE
T ss_pred HHHHHHHhcCCEEEEEEEEEc-cCCchhHHHHHHHHHHCCcEEEEEeeeeccCCccCCCccHHHHHHHHHhhccCCEEEE
Confidence 345555555553334445532 222245677889999999988643211 1111123455444444332 245789999
Q ss_pred EcChhhHHHHHHHHHHc-Cc
Q 002364 230 HVSPSLGFQVFSVAKYL-GM 248 (930)
Q Consensus 230 ~~~~~~~~~~~~~a~~~-g~ 248 (930)
.+...+-..+++.+++. |.
T Consensus 115 vSgD~DF~plv~~lr~~~G~ 134 (165)
T 2qip_A 115 VSGDGDFSLLVERIQQRYNK 134 (165)
T ss_dssp ECCCGGGHHHHHHHHHHHCC
T ss_pred EECChhHHHHHHHHHHHcCc
Confidence 88888999999999994 84
No 379
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=25.58 E-value=1.3e+02 Score=30.72 Aligned_cols=79 Identities=14% Similarity=0.073 Sum_probs=52.3
Q ss_pred ccEEEEEEE--cCccccchHHHHHHHHhhcceEEEEEEecCCCCCCChhHHHHHHHHHHhCCceEEEEEcChhhHHHHHH
Q 002364 164 WNAVSVIFV--DNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFS 241 (930)
Q Consensus 164 w~~v~ii~~--d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~~~~ 241 (930)
-..++++.. +++|.......+.+.+++.|..+.... .. .+.......++.+...+.|.||+....... ..++
T Consensus 60 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~---~~--~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~-~~~~ 133 (332)
T 2hsg_A 60 TTTVGVIIPDISNIFYAELARGIEDIATMYKYNIILSN---SD--QNQDKELHLLNNMLGKQVDGIIFMSGNVTE-EHVE 133 (332)
T ss_dssp CCEEEEEEC--CCSHHHHHHHHHHHHHHHHTCEEEEEE---CC--SHHHHHHHHHHHTSCCSSCCEEECCSSCCH-HHHH
T ss_pred CCEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCEEEEEe---CC--CChHHHHHHHHHHHhCCCcEEEEecCCCCH-HHHH
Confidence 357888874 467778888999999999998876532 11 113334456777777789999887543322 4566
Q ss_pred HHHHcCc
Q 002364 242 VAKYLGM 248 (930)
Q Consensus 242 ~a~~~g~ 248 (930)
.+.+.|.
T Consensus 134 ~l~~~~i 140 (332)
T 2hsg_A 134 ELKKSPV 140 (332)
T ss_dssp HHTTSSS
T ss_pred HHHhCCC
Confidence 6665553
No 380
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=25.55 E-value=1.6e+02 Score=28.89 Aligned_cols=79 Identities=5% Similarity=0.101 Sum_probs=52.2
Q ss_pred cEEEEEEE--cCccccchHHHHHHHHhhcceEEEEEEecCCCCCCChhHHHHHHHHHHhCCceEEEEEcChh-hHHHHHH
Q 002364 165 NAVSVIFV--DNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPS-LGFQVFS 241 (930)
Q Consensus 165 ~~v~ii~~--d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~-~~~~~~~ 241 (930)
+.++++.. +++|.......+.+++++.|..+..... .. +...-...++.+...+.|.||+..... .....++
T Consensus 2 ~~Igvi~~~~~~~f~~~~~~gi~~~~~~~g~~~~~~~~--~~---~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~ 76 (271)
T 2dri_A 2 DTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDS--QN---NPAKELANVQDLTVRGTKILLINPTDSDAVGNAVK 76 (271)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHHTCEEEEEEC--TT---CHHHHHHHHHHHTTTTEEEEEECCSSTTTTHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHHHHHHHHcCcEEEEeCC--CC---CHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHH
Confidence 46777774 3567778889999999999988765321 11 233344567777778899999864432 2234667
Q ss_pred HHHHcCc
Q 002364 242 VAKYLGM 248 (930)
Q Consensus 242 ~a~~~g~ 248 (930)
.+.+.|.
T Consensus 77 ~~~~~~i 83 (271)
T 2dri_A 77 MANQANI 83 (271)
T ss_dssp HHHHTTC
T ss_pred HHHHCCC
Confidence 7777664
No 381
>4ecf_A ABC-type phosphate transport system, periplasmic; ABC transporter, phosphate transport receptor; HET: MSE; 1.55A {Lactobacillus brevis}
Probab=25.51 E-value=79 Score=31.51 Aligned_cols=72 Identities=8% Similarity=-0.008 Sum_probs=47.4
Q ss_pred eeHHHHHHHHHhCCCcccEEEEecCCCCCCCCHHHHHHHHHcCcccEEEeeeeeecC---ceeeeeecccccccceEEEE
Q 002364 493 FCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGDITIVTN---RTKIVDFSQPYAASGLVVVV 569 (930)
Q Consensus 493 ~~~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~t~~---r~~~vdft~p~~~~~~~~lv 569 (930)
+.-++++.+.++.+ .+++.+.. ++-...+.+|.+|++|+++....+... ....+ ...|+..+.+++++
T Consensus 17 ~l~~~~~~f~~~~P-~v~i~v~~-------~~S~~~~~~l~~g~~Dig~~~~~~~~~e~~~~~~l-~~~~i~~d~lvvvv 87 (264)
T 4ecf_A 17 LVEAAGEQYTGEHL-GTFINVQG-------GGTGTGLSQIQEGAVQIGNSDLFAGEQKGINARQL-VDHRVAVVGITPIV 87 (264)
T ss_dssp HHHHHHHHHHHHST-TEEEEEEE-------ECHHHHHHHHHHTSSSEEEESSCGGGSTTCCGGGE-ECCEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHCC-CceEEEEe-------CCCHHHHHHHHcCCCchhhccCCCChhHHhhccCC-EEEEEEEEEEEEEE
Confidence 44567777777763 13344433 346788999999999998865443321 01112 35789999999999
Q ss_pred eccC
Q 002364 570 PFRK 573 (930)
Q Consensus 570 ~~~~ 573 (930)
++..
T Consensus 88 ~~~~ 91 (264)
T 4ecf_A 88 NKKV 91 (264)
T ss_dssp CTTS
T ss_pred cCCC
Confidence 8765
No 382
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=25.48 E-value=2.8e+02 Score=22.81 Aligned_cols=57 Identities=16% Similarity=0.059 Sum_probs=38.1
Q ss_pred hHHHHHHHHhhcceEEEEEEecCCCCCCChhHHHHHHHHHHhCCceEEEEEcC--hhhHHHHHHHHHHcC
Q 002364 180 GVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVS--PSLGFQVFSVAKYLG 247 (930)
Q Consensus 180 ~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~--~~~~~~~~~~a~~~g 247 (930)
....+...+++.|..+.. ..+....+..+++..+|+|++... ..++..++++.++..
T Consensus 14 ~~~~l~~~l~~~g~~v~~-----------~~~~~~al~~l~~~~~dlvllD~~~p~~~g~~~~~~l~~~~ 72 (122)
T 3gl9_A 14 LRKIVSFNLKKEGYEVIE-----------AENGQIALEKLSEFTPDLIVLXIMMPVMDGFTVLKKLQEKE 72 (122)
T ss_dssp HHHHHHHHHHHTTCEEEE-----------ESSHHHHHHHHTTBCCSEEEECSCCSSSCHHHHHHHHHTST
T ss_pred HHHHHHHHHHHCCcEEEE-----------eCCHHHHHHHHHhcCCCEEEEeccCCCCcHHHHHHHHHhcc
Confidence 456677778778877642 123345566777788999998643 456778888887643
No 383
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=25.29 E-value=1.7e+02 Score=26.92 Aligned_cols=62 Identities=18% Similarity=0.104 Sum_probs=39.5
Q ss_pred cEEEEEEEcCc--ccc---chHHHHHHHHhhcceEEEEEEecCCCCCCChhHHHHHHHHHHhCCceEEEEEc
Q 002364 165 NAVSVIFVDNE--YGR---NGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHV 231 (930)
Q Consensus 165 ~~v~ii~~d~~--~g~---~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~ 231 (930)
-++++|...|. .|+ .....+.+.+.+.|+++.....++.+ ...+...+++..+. +|+||+.+
T Consensus 4 ~~v~IistGdEll~G~i~DtN~~~l~~~L~~~G~~v~~~~iv~Dd----~~~I~~~l~~a~~~-~DlVittG 70 (172)
T 3kbq_A 4 KNASVITVGNEILKGRTVNTNAAFIGNFLTYHGYQVRRGFVVMDD----LDEIGWAFRVALEV-SDLVVSSG 70 (172)
T ss_dssp CEEEEEEECHHHHTTSSCCHHHHHHHHHHHHTTCEEEEEEEECSC----HHHHHHHHHHHHHH-CSEEEEES
T ss_pred CEEEEEEEcccccCCcEEeHHHHHHHHHHHHCCCEEEEEEEeCCC----HHHHHHHHHHHHhc-CCEEEEcC
Confidence 35677665443 122 23466777888888888776666643 66777777766543 77877764
No 384
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=24.94 E-value=2.3e+02 Score=28.00 Aligned_cols=78 Identities=10% Similarity=-0.033 Sum_probs=51.9
Q ss_pred ccEEEEEEE--cCccccchHHHHHHHHhhcceEEEEEEecCCCCCCChhHHHHHHHHHHhCCceEEEEEcChhhHHHHHH
Q 002364 164 WNAVSVIFV--DNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFS 241 (930)
Q Consensus 164 w~~v~ii~~--d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~~~~ 241 (930)
-..|+++.. +++|.......+.+++++.|..+..... . .+.......++.+.+.+.|.||+....... ..++
T Consensus 8 ~~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~---~--~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~-~~~~ 81 (285)
T 3c3k_A 8 TGMLLVMVSNIANPFCAAVVKGIEKTAEKNGYRILLCNT---E--SDLARSRSCLTLLSGKMVDGVITMDALSEL-PELQ 81 (285)
T ss_dssp CCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEEC---T--TCHHHHHHHTHHHHTTCCSEEEECCCGGGH-HHHH
T ss_pred CCEEEEEeCCCCCchHHHHHHHHHHHHHHcCCEEEEEeC---C--CCHHHHHHHHHHHHhCCCCEEEEeCCCCCh-HHHH
Confidence 357888875 4667778889999999999988765321 1 123444566777878889999987543322 3455
Q ss_pred HHHHcCc
Q 002364 242 VAKYLGM 248 (930)
Q Consensus 242 ~a~~~g~ 248 (930)
.+. .|.
T Consensus 82 ~l~-~~i 87 (285)
T 3c3k_A 82 NII-GAF 87 (285)
T ss_dssp HHH-TTS
T ss_pred HHh-cCC
Confidence 555 553
No 385
>3kn3_A Putative periplasmic protein; alpha-beta structure, periplasmic binding protein fold, STRU genomics, PSI-2, protein structure initiative; HET: GSH CIT; 2.41A {Wolinella succinogenes}
Probab=24.77 E-value=44 Score=32.90 Aligned_cols=74 Identities=11% Similarity=-0.095 Sum_probs=49.6
Q ss_pred EeeeHHHHHHHHHhCCCcccEEEEecCCCCCCCCHHHHHHHHHcCcccEEEeeeeeecCce---eeeeecccccccceEE
Q 002364 491 QGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGDITIVTNRT---KIVDFSQPYAASGLVV 567 (930)
Q Consensus 491 ~G~~~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~t~~r~---~~vdft~p~~~~~~~~ 567 (930)
.|+--+|...+.++.|.++.+.+. .-..++.++.+|.+|+.+..-....+.. ....-..+|....+++
T Consensus 18 s~ll~eL~~~Fek~~gv~V~~~~~---------gSg~ll~qi~~G~aDVfisa~~~~~~~l~~~G~~~~~~~~a~N~LVL 88 (242)
T 3kn3_A 18 TGLLDVLAPAYKKDTGVDLKWVAV---------GTGNALKLGENCDVDVVFVHAPKVELEYVEKGFGIDRTPVMYNDFVI 88 (242)
T ss_dssp HTHHHHHHHHHHHHHSCEEEEEEE---------CHHHHHHHHHTTCCSEEEECCHHHHHHHHHHTSEEEEEEEECSCEEE
T ss_pred chHHHHHHHHHHHHhCCeEEEEEc---------CcHHHHHHHhcCCCCEEEecChHhHHHHHhcCCCccceEEEcceEEE
Confidence 356677888888888866555543 3668899999999999875332222111 0111236888999999
Q ss_pred EEeccC
Q 002364 568 VVPFRK 573 (930)
Q Consensus 568 lv~~~~ 573 (930)
++|+.+
T Consensus 89 V~P~~~ 94 (242)
T 3kn3_A 89 IGNPSF 94 (242)
T ss_dssp EECTHH
T ss_pred EEeCCC
Confidence 999865
No 386
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=24.06 E-value=26 Score=33.93 Aligned_cols=31 Identities=13% Similarity=0.169 Sum_probs=28.6
Q ss_pred CcEEEEcCCChhHHHHHHHhhccCCCcEEec
Q 002364 96 DIVAIIGPQCSTVAHIVSYVSNELQVPLLSF 126 (930)
Q Consensus 96 ~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~ 126 (930)
+|+.|+||.+|+=......+++.+++|+||.
T Consensus 30 kiI~llGpPGsGKgTqa~~L~~~~g~~hIst 60 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQCEKLVQKFHFNHLSS 60 (217)
T ss_dssp EEEEEECCTTCCHHHHHHHHHHHHCCEEECH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHCCceEcH
Confidence 7899999999999999999999999999974
No 387
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=23.94 E-value=5.1e+02 Score=25.24 Aligned_cols=118 Identities=11% Similarity=0.080 Sum_probs=63.5
Q ss_pred EEEEEEeeCC-CcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCChHHHHHHHHHHHhc--CcEEEEcCCChhH
Q 002364 32 VNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMET--DIVAIIGPQCSTV 108 (930)
Q Consensus 32 i~IG~i~~~s-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~--~v~aiiGp~~s~~ 108 (930)
=+||++.... ......-..|++-++++.. + . +.- ......+...+.+.+.+++.. ++.||+... ...
T Consensus 132 ~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g----~---~-~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~-d~~ 201 (289)
T 3brs_A 132 GKIGVISFVKNSKTAMDREEGLKIGLSDDS----N---K-IEA-IYYCDSNYDKAYDGTVELLTKYPDISVMVGLN-QYS 201 (289)
T ss_dssp CEEEEEESCTTSHHHHHHHHHHHHHHGGGG----G---G-EEE-EEECTTCHHHHHHHHHHHHHHCTTEEEEEESS-HHH
T ss_pred ceEEEEECCCCCccHHHHHHHHHHHHHhCC----C---c-EEe-eecCCCCHHHHHHHHHHHHHhCCCceEEEECC-Ccc
Confidence 3677776542 2233444567777766521 1 1 211 122334666777778888865 589999754 344
Q ss_pred HHHHHHhhccCC----CcEEecccCCCCCCCCCCCce-EeecCCchHHHHHHHHHH
Q 002364 109 AHIVSYVSNELQ----VPLLSFGVTDPTLSSLQYPFF-VRTTQSDSYQMTAVAEMV 159 (930)
Q Consensus 109 ~~~v~~~~~~~~----iP~is~~a~~~~l~~~~~p~~-~r~~p~~~~~~~ai~~~l 159 (930)
+..+...+.+.+ +.++++........-...|.+ .....+...++...++.+
T Consensus 202 a~g~~~al~~~G~~~di~vvg~d~~~~~~~~~~~~~l~ttv~~~~~~~g~~a~~~l 257 (289)
T 3brs_A 202 ATGAARAIKDMSLEAKVKLVCIDSSMEQIQYLEEGIFEAMVVQKPFNIGYLGVEKA 257 (289)
T ss_dssp HHHHHHHHHHTTCTTTSEEEEEESCSCC-----CCSCCEEEECCHHHHHHHHHHHH
T ss_pred hHHHHHHHHhcCCCCCEEEEEECCCHHHHHHHHCCceEEEEecChHHHHHHHHHHH
Confidence 555555555554 678877554321111111334 455566666777666654
No 388
>1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1
Probab=23.87 E-value=3.4e+02 Score=27.30 Aligned_cols=132 Identities=13% Similarity=0.016 Sum_probs=78.4
Q ss_pred ChHHHHHHHHHHHhcCcE-EEEcCC--ChhHHHHHHHhhccCCCcEEecccCCCCCCCCCCCceEeecCCchHHHHHHHH
Q 002364 81 SGFIGMVEALRFMETDIV-AIIGPQ--CSTVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAE 157 (930)
Q Consensus 81 ~~~~a~~~a~~li~~~v~-aiiGp~--~s~~~~~v~~~~~~~~iP~is~~a~~~~l~~~~~p~~~r~~p~~~~~~~ai~~ 157 (930)
.+..+...+.++++.++. +++... .......+...+.+.++.++.+.+.. +-+.. ....-+.|..
T Consensus 73 p~~~~~~~~~ea~~~Gi~~vVi~t~G~~~~~~~~l~~~a~~~gi~vigPNc~G--ii~~~-~~~~~~~~~~--------- 140 (288)
T 1oi7_A 73 PAPAAADAALEAAHAGIPLIVLITEGIPTLDMVRAVEEIKALGSRLIGGNCPG--IISAE-ETKIGIMPGH--------- 140 (288)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEECCSCCCHHHHHHHHHHHHHHTCEEEESSSCE--EEETT-TEEEESSCGG---------
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCEEEeCCCCe--EEcCC-CceeEEcccC---------
Confidence 456667777788888777 444432 22335578888888999888765432 11110 0011111211
Q ss_pred HHHhcCccEEEEEEEcCccccchHHHHHHHHhhcceEEEEEEecCCCCCCC-hhHHHHHHHHHHh-CCceEEEEEcCh
Q 002364 158 MVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVN-TGYVMDLLVKVAL-MESRVIVLHVSP 233 (930)
Q Consensus 158 ~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~-~~~~~~~l~~l~~-~~~~viil~~~~ 233 (930)
...--+|++|.+.... ...+.+.+.+.|+-++....+-.. .. ..++...|+.+.+ .++++|+++...
T Consensus 141 ---~~~~G~va~vsqSG~l----~~~~~~~~~~~g~G~s~~vs~G~~--~~~~~~~~d~l~~~~~D~~t~~I~l~~E~ 209 (288)
T 1oi7_A 141 ---VFKRGRVGIISRSGTL----TYEAAAALSQAGLGTTTTVGIGGD--PVIGTTFKDLLPLFNEDPETEAVVLIGEI 209 (288)
T ss_dssp ---GCCEEEEEEEESCHHH----HHHHHHHHHHTTCCEEEEEECCSS--SCCSSCHHHHHHHHHTCTTCCEEEEEECS
T ss_pred ---CCCCCCEEEEECCHHH----HHHHHHHHHhCCCCEEEEEeeCCC--cCCCCCHHHHHHHHhcCCCCCEEEEEEee
Confidence 2234579998866653 345566677777777665555433 21 3467777777754 678999999774
No 389
>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3
Probab=23.50 E-value=1.8e+02 Score=29.03 Aligned_cols=82 Identities=11% Similarity=0.021 Sum_probs=56.4
Q ss_pred CCeEEE--eCchHHHHHHHhhccccccceecCCHHHHHHHHhcCCCCCceEEEEecc---------hhHHHHHhcCccEE
Q 002364 693 DPIGYQ--EGSFAEYYLSQELNISKSRLVALRTPEDYAKALKDGPGKGGVAAVVDER---------PYVELFLSSQCSFR 761 (930)
Q Consensus 693 ~~v~~~--~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~i~~~---------~~~~~~~~~~~~l~ 761 (930)
.+|++. .|++.+.-..+.++.....++++.+.++.++++.+ |+++..+... ..++.+.. .+++
T Consensus 4 ~~iaylGp~Gtfs~~Aa~~~f~~~~~~~~~~~s~~~v~~aV~~----g~~d~gVvPiENS~~G~V~~t~DlL~~--~~l~ 77 (267)
T 2qmw_A 4 MQLYYLGPKGTFSYLACRQYFSENEATFQPKSNLFEVIKAVAD----DDTSIGVVPIENSIEGTINIVADALAQ--QDVF 77 (267)
T ss_dssp CEEEEECSTTSHHHHHHHHHCCTTSSEEEEESSHHHHHHHHHH----CSSEEEEEEEESCSSSCSHHHHHHHHT--TSSE
T ss_pred cEEEEECCCCcHHHHHHHHhhccCCceEEEcCCHHHHHHHHHc----CCCCEEEEEehhcCCCChHHHHHHhhc--CCcE
Confidence 357776 57777776655443221347889999999999999 8887666532 13333333 2689
Q ss_pred EeCccccccceeeeeCCCC
Q 002364 762 IVGQEFTKSGWGFAFPRDS 780 (930)
Q Consensus 762 ~~~~~~~~~~~~~~~~k~s 780 (930)
++++.+.....++...+|.
T Consensus 78 I~gE~~l~I~h~Ll~~~g~ 96 (267)
T 2qmw_A 78 AHGEIRLDINFALYGNGTD 96 (267)
T ss_dssp EEEEEEEECCEEEECCSSC
T ss_pred EEEEEEEEeeeEEEecCCC
Confidence 9999888888888887764
No 390
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=23.48 E-value=35 Score=32.76 Aligned_cols=30 Identities=17% Similarity=0.225 Sum_probs=27.0
Q ss_pred cEEEEcCCChhHHHHHHHhhccCCCcEEec
Q 002364 97 IVAIIGPQCSTVAHIVSYVSNELQVPLLSF 126 (930)
Q Consensus 97 v~aiiGp~~s~~~~~v~~~~~~~~iP~is~ 126 (930)
+.+++||.+|+=......+++.+++|+||.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~ist 31 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVHIST 31 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeEEcH
Confidence 467899999999999999999999999984
No 391
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=23.37 E-value=3.6e+02 Score=23.31 Aligned_cols=58 Identities=14% Similarity=0.068 Sum_probs=40.3
Q ss_pred chHHHHHHHHhhcceEEEEEEecCCCCCCChhHHHHHHHHHHhCCceEEEEEcC--hhhHHHHHHHHHHcC
Q 002364 179 NGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVS--PSLGFQVFSVAKYLG 247 (930)
Q Consensus 179 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~--~~~~~~~~~~a~~~g 247 (930)
.....+.+.+++.|..+.. ..+....+..+++..+|+||+... ..++..+++..++..
T Consensus 18 ~~~~~l~~~L~~~g~~v~~-----------~~~~~~al~~l~~~~~dlii~D~~l~~~~g~~~~~~lr~~~ 77 (154)
T 3gt7_A 18 TQAEHLKHILEETGYQTEH-----------VRNGREAVRFLSLTRPDLIISDVLMPEMDGYALCRWLKGQP 77 (154)
T ss_dssp HHHHHHHHHHHTTTCEEEE-----------ESSHHHHHHHHTTCCCSEEEEESCCSSSCHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHCCCEEEE-----------eCCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCC
Confidence 3567778888888876532 123445667777788999999754 456778888888754
No 392
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=23.10 E-value=2.9e+02 Score=23.88 Aligned_cols=58 Identities=7% Similarity=-0.012 Sum_probs=37.6
Q ss_pred hHHHHHHHHhhcceEEEEEEecCCCCCCChhHHHHHHHHHHhCCceEEEEE--cChhhHHHHHHHHHHcC
Q 002364 180 GVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLH--VSPSLGFQVFSVAKYLG 247 (930)
Q Consensus 180 ~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~--~~~~~~~~~~~~a~~~g 247 (930)
....+...+++.|..++.. ..+-...+..+++..+|+|++. +..-++..++++.++..
T Consensus 24 ~r~~l~~~L~~~G~~~v~~----------a~~g~~al~~~~~~~~DlillD~~MP~mdG~el~~~ir~~~ 83 (134)
T 3to5_A 24 MRRIVKNLLRDLGFNNTQE----------ADDGLTALPMLKKGDFDFVVTDWNMPGMQGIDLLKNIRADE 83 (134)
T ss_dssp HHHHHHHHHHHTTCCCEEE----------ESSHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHHST
T ss_pred HHHHHHHHHHHcCCcEEEE----------ECCHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHhCC
Confidence 4566777788888653321 1223345666667789999986 44567888888887643
No 393
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*
Probab=22.89 E-value=2.5e+02 Score=28.04 Aligned_cols=87 Identities=15% Similarity=0.124 Sum_probs=58.1
Q ss_pred HHHHHHHHhcCccEEEEEEEcCccccchHHHHHHHHhhcceEEEEEEecCCCCCCChhHHHHHHHHHHhCCceEEEEE--
Q 002364 153 TAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLH-- 230 (930)
Q Consensus 153 ~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~-- 230 (930)
..+++....-|-..+.++. |+.|..+..+.++..-+..++.|.... +- .+++ ++...+..++|.|++.
T Consensus 75 ~~~A~~y~~~GA~~isvlt-d~~~f~Gs~~~l~~ir~~v~lPvl~kd-fi------id~~--qv~~A~~~GAD~VlLi~a 144 (272)
T 3qja_A 75 AKLAQAYQDGGARIVSVVT-EQRRFQGSLDDLDAVRASVSIPVLRKD-FV------VQPY--QIHEARAHGADMLLLIVA 144 (272)
T ss_dssp HHHHHHHHHTTCSEEEEEC-CGGGHHHHHHHHHHHHHHCSSCEEEES-CC------CSHH--HHHHHHHTTCSEEEEEGG
T ss_pred HHHHHHHHHcCCCEEEEec-ChhhcCCCHHHHHHHHHhCCCCEEECc-cc------cCHH--HHHHHHHcCCCEEEEecc
Confidence 4566667777888888775 555666656666666555666665432 21 2222 3566667899999985
Q ss_pred -cChhhHHHHHHHHHHcCcc
Q 002364 231 -VSPSLGFQVFSVAKYLGMM 249 (930)
Q Consensus 231 -~~~~~~~~~~~~a~~~g~~ 249 (930)
..+.+...++..+++.|+.
T Consensus 145 ~l~~~~l~~l~~~a~~lGl~ 164 (272)
T 3qja_A 145 ALEQSVLVSMLDRTESLGMT 164 (272)
T ss_dssp GSCHHHHHHHHHHHHHTTCE
T ss_pred cCCHHHHHHHHHHHHHCCCc
Confidence 3456777889999998874
No 394
>1uuy_A CNX1, molybdopterin biosynthesis CNX1; chelatase, molybdenum cofactor biosynthesis; HET: MTE AMP; 1.45A {Arabidopsis thaliana} SCOP: c.57.1.1 PDB: 1o8q_A 1o8n_A 1o8o_A 1uux_A* 1eav_A
Probab=22.32 E-value=1.4e+02 Score=27.28 Aligned_cols=75 Identities=13% Similarity=0.126 Sum_probs=47.4
Q ss_pred cEEEEEEEcCcc--cc---chHHHHHHHHhhc-----ceEEEEEEecCCCCCCChhHHHHHHHHHHh-CCceEEEEEcCh
Q 002364 165 NAVSVIFVDNEY--GR---NGVSALNDKLAER-----RCRISYKSGIPPESGVNTGYVMDLLVKVAL-MESRVIVLHVSP 233 (930)
Q Consensus 165 ~~v~ii~~d~~~--g~---~~~~~l~~~l~~~-----g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~-~~~~viil~~~~ 233 (930)
-+|++|...|.- |+ .....+.+.+++. |.++.....++.+ .+.+...+++..+ .++|+||+.+..
T Consensus 6 ~rv~IistGde~~~G~~~d~n~~~l~~~l~~~~~~~~G~~v~~~~iv~Dd----~~~i~~~l~~~~~~~~~DlVittGG~ 81 (167)
T 1uuy_A 6 YKVAILTVSDTVSAGAGPDRSGPRAVSVVDSSSEKLGGAKVVATAVVPDE----VERIKDILQKWSDVDEMDLILTLGGT 81 (167)
T ss_dssp EEEEEEEECHHHHTTSSCCSHHHHHHHHHHHTTTTTTSEEEEEEEEECSC----HHHHHHHHHHHHHTSCCSEEEEESCC
T ss_pred cEEEEEEECCcccCCCCccCcHHHHHHHHHhccccCCCcEEeEEEEcCCC----HHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 477777754432 11 1124566677766 8888877666644 7788888888764 479999987543
Q ss_pred -----hhHHHHHHHH
Q 002364 234 -----SLGFQVFSVA 243 (930)
Q Consensus 234 -----~~~~~~~~~a 243 (930)
+.....++++
T Consensus 82 g~g~~D~t~~a~~~~ 96 (167)
T 1uuy_A 82 GFTPRDVTPEATKKV 96 (167)
T ss_dssp SSSTTCCHHHHHHHH
T ss_pred CCCCCCchHHHHHHH
Confidence 3344455444
No 395
>1nrz_A PTS system, sorbose-specific IIB component; beta sheet core, flanking helices, right handed beta-alpha-B crossover, transferase; 1.75A {Klebsiella pneumoniae} SCOP: c.38.1.1
Probab=22.25 E-value=1.6e+02 Score=26.80 Aligned_cols=79 Identities=8% Similarity=0.035 Sum_probs=55.9
Q ss_pred HHHHHHHHHhcCccEEEEEEEcCccccchHHHHHHHHhhcceEEEEEEecCCCCCCChhHHHHHHHHHHhCCceEEEEEc
Q 002364 152 MTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHV 231 (930)
Q Consensus 152 ~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~ 231 (930)
++....+.++++.+++.++- |..........+.....-.|+++... +.++....+.+-+..+.++++++-
T Consensus 15 GQV~t~W~k~~~~~~IiVvn-D~vA~D~~~k~~lk~a~P~gvk~~i~---------sve~ai~~~~~~~~~~~~v~ll~k 84 (164)
T 1nrz_A 15 GQVTTVWSKVANAQRIIICN-DDVFNDEVRRTLLRQAAPPGMKVNVV---------SLEKAVAVYHNPQYQDETVFYLFT 84 (164)
T ss_dssp HHHHHHHHHHHTCSEEEEEC-HHHHTCHHHHHHHHHTCCTTCEEEEE---------CHHHHHHHHTCGGGTTCEEEEEES
T ss_pred hhheeeeccccCCCEEEEeC-ccccCCHHHHHHHHhcCCCCCeEEEE---------EHHHHHHHHhcccCCCceEEEEEC
Confidence 67788899999999998873 33334445566666666678876642 245555555555456789999999
Q ss_pred ChhhHHHHH
Q 002364 232 SPSLGFQVF 240 (930)
Q Consensus 232 ~~~~~~~~~ 240 (930)
++.++..++
T Consensus 85 ~p~d~~~lv 93 (164)
T 1nrz_A 85 NPHDVLTMV 93 (164)
T ss_dssp SHHHHHHHH
T ss_pred CHHHHHHHH
Confidence 999988775
No 396
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=22.02 E-value=1.3e+02 Score=29.98 Aligned_cols=78 Identities=6% Similarity=-0.153 Sum_probs=49.8
Q ss_pred cEEEEEEE------cCccccchHHHHHHHHhhcceEEEEEEecCCCCCCChhHHHHHHHHHHhCCceEEEEEcChhhHHH
Q 002364 165 NAVSVIFV------DNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQ 238 (930)
Q Consensus 165 ~~v~ii~~------d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~ 238 (930)
+.|+++.. +++|.......+.+++++.|..+... ... .+.......++.+.+.+.|.||+....... .
T Consensus 5 ~~Ig~i~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~---~~~--~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~-~ 78 (287)
T 3bbl_A 5 FMIGYSWTQTEPGQVNHILDQFLSSMVREAGAVNYFVLPF---PFS--EDRSQIDIYRDLIRSGNVDGFVLSSINYND-P 78 (287)
T ss_dssp CEEEECCCCCCTTCSCCTHHHHHHHHHHHHHHTTCEEEEC---CCC--SSTTCCHHHHHHHHTTCCSEEEECSCCTTC-H
T ss_pred eEEEEEecccccccCChhHHHHHHHHHHHHHHcCCEEEEE---eCC--CchHHHHHHHHHHHcCCCCEEEEeecCCCc-H
Confidence 45677653 34677788899999999999887642 111 112233456777777889999987543222 4
Q ss_pred HHHHHHHcCc
Q 002364 239 VFSVAKYLGM 248 (930)
Q Consensus 239 ~~~~a~~~g~ 248 (930)
.++.+.+.|.
T Consensus 79 ~~~~l~~~~i 88 (287)
T 3bbl_A 79 RVQFLLKQKF 88 (287)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHhcCC
Confidence 5666666564
No 397
>2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii}
Probab=22.02 E-value=3.2e+02 Score=27.58 Aligned_cols=132 Identities=8% Similarity=0.007 Sum_probs=78.1
Q ss_pred ChHHHHHHHHHHHhcCcE-EEEcCC--ChhHHHHHHHhhccCCCcEEecccCCCCCCCCCCCceEeecCCchHHHHHHHH
Q 002364 81 SGFIGMVEALRFMETDIV-AIIGPQ--CSTVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAE 157 (930)
Q Consensus 81 ~~~~a~~~a~~li~~~v~-aiiGp~--~s~~~~~v~~~~~~~~iP~is~~a~~~~l~~~~~p~~~r~~p~~~~~~~ai~~ 157 (930)
.+..+...+.++++.++. +++... .......+...+.+.++.++.+.+.. +-+.. ....-+.|..
T Consensus 79 p~~~~~~~v~ea~~~Gi~~vVi~t~G~~~~~~~~l~~~A~~~gi~viGPNc~G--ii~~~-~~~~~~~~~~--------- 146 (294)
T 2yv1_A 79 PAPFAKDAVFEAIDAGIELIVVITEHIPVHDTMEFVNYAEDVGVKIIGPNTPG--IASPK-VGKLGIIPME--------- 146 (294)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEECCSCCCHHHHHHHHHHHHHHTCEEECSSCCE--EEETT-TEEEECCCGG---------
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCEEEcCCCce--eeccC-cceeeecccC---------
Confidence 456667777778887777 444432 23445678888888999888765321 21110 0011111211
Q ss_pred HHHhcCccEEEEEEEcCccccchHHHHHHHHhhcceEEEEEEecCCCCCCC-hhHHHHHHHHHHh-CCceEEEEEcCh
Q 002364 158 MVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVN-TGYVMDLLVKVAL-MESRVIVLHVSP 233 (930)
Q Consensus 158 ~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~-~~~~~~~l~~l~~-~~~~viil~~~~ 233 (930)
...--+|++|.+.... ...+.+.+.+.|+-++....+-.. .. ..++...|+.+.+ .++++|+++...
T Consensus 147 ---~~~~G~va~vSqSG~l----~~~~~~~~~~~g~G~s~~vs~G~~--~~~~~~~~d~l~~~~~D~~T~~I~l~~E~ 215 (294)
T 2yv1_A 147 ---VLKEGSVGMVSRSGTL----TYEIAHQIKKAGFGVSTCVGIGGD--PIVGLRYKEVLDLFEKDDETEAIVMIGEI 215 (294)
T ss_dssp ---GCCEEEEEEEESCSHH----HHHHHHHHHHTTCCEEEEEECCSS--SSCSSCHHHHHHHHHTCTTCSEEEEEEES
T ss_pred ---CCCCCCEEEEECCHHH----HHHHHHHHHhCCCCeEEEEeeCCC--CCCCCCHHHHHHHHhcCCCCCEEEEEEee
Confidence 1233579999877654 345556677777777665555433 11 3467777777754 578999998774
No 398
>1jlj_A Gephyrin; globular alpha/beta fold, structural protein; 1.60A {Homo sapiens} SCOP: c.57.1.1 PDB: 1ihc_A
Probab=21.75 E-value=2.5e+02 Score=26.15 Aligned_cols=68 Identities=18% Similarity=0.090 Sum_probs=45.4
Q ss_pred hcCccEEEEEEEcCcc--c---cchHHHHHHHHhh---cceEEEEEEecCCCCCCChhHHHHHHHHHHh-CCceEEEEEc
Q 002364 161 YYGWNAVSVIFVDNEY--G---RNGVSALNDKLAE---RRCRISYKSGIPPESGVNTGYVMDLLVKVAL-MESRVIVLHV 231 (930)
Q Consensus 161 ~~~w~~v~ii~~d~~~--g---~~~~~~l~~~l~~---~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~-~~~~viil~~ 231 (930)
-+.--++++|...|+- | ......+.+.+++ .|.++.....++.+ .+.+...+++..+ .++|+||+.+
T Consensus 11 v~~~~rv~IistGdEl~~g~~~D~n~~~L~~~L~~~~~~G~~v~~~~iv~Dd----~~~I~~al~~a~~~~~~DlVIttG 86 (189)
T 1jlj_A 11 HDHQIRVGVLTVSDSCFRNLAEDRSGINLKDLVQDPSLLGGTISAYKIVPDE----IEEIKETLIDWCDEKELNLILTTG 86 (189)
T ss_dssp --CCCEEEEEEECHHHHTTSSCCHHHHHHHHHHHCTTTTCCEEEEEEEECSC----HHHHHHHHHHHHHTSCCSEEEEES
T ss_pred ccCCCEEEEEEECCccCCCcccchHHHHHHHHHhchhcCCcEEEEEEEeCCC----HHHHHHHHHHHhhcCCCCEEEEcC
Confidence 3444678888765441 1 1234567888887 78888877667644 7788888887754 3789999875
Q ss_pred C
Q 002364 232 S 232 (930)
Q Consensus 232 ~ 232 (930)
.
T Consensus 87 G 87 (189)
T 1jlj_A 87 G 87 (189)
T ss_dssp C
T ss_pred C
Confidence 4
No 399
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=21.68 E-value=3.3e+02 Score=27.98 Aligned_cols=76 Identities=9% Similarity=-0.085 Sum_probs=50.2
Q ss_pred ccEEEEEEEcCcc---ccchHHHHHHHHhhcceEEEEEEecCCCCCCChhHHHHHHHHHHhCCceEEEEEcChhhHHHHH
Q 002364 164 WNAVSVIFVDNEY---GRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVF 240 (930)
Q Consensus 164 w~~v~ii~~d~~~---g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~~~ 240 (930)
-+++.+|+.-..- +...++.+.+.+++.|+++.....-. ..+......++...+.|.||+++.......++
T Consensus 24 m~~i~vI~NP~sg~~~~~~~~~~i~~~L~~~g~~~~~~~t~~------~~~a~~~~~~~~~~~~d~vvv~GGDGTv~~v~ 97 (337)
T 2qv7_A 24 RKRARIIYNPTSGKEQFKRELPDALIKLEKAGYETSAYATEK------IGDATLEAERAMHENYDVLIAAGGDGTLNEVV 97 (337)
T ss_dssp CEEEEEEECTTSTTSCHHHHHHHHHHHHHHTTEEEEEEECCS------TTHHHHHHHHHTTTTCSEEEEEECHHHHHHHH
T ss_pred cceEEEEECCCCCCCchHHHHHHHHHHHHHcCCeEEEEEecC------cchHHHHHHHHhhcCCCEEEEEcCchHHHHHH
Confidence 3778888743221 12446788899999998776543222 23445555666566789999988888888888
Q ss_pred HHHHH
Q 002364 241 SVAKY 245 (930)
Q Consensus 241 ~~a~~ 245 (930)
+.+.+
T Consensus 98 ~~l~~ 102 (337)
T 2qv7_A 98 NGIAE 102 (337)
T ss_dssp HHHTT
T ss_pred HHHHh
Confidence 87744
No 400
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=21.55 E-value=2e+02 Score=19.66 Aligned_cols=21 Identities=5% Similarity=0.010 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHhhhcC
Q 002364 839 ACFIALVIYFLQIMQQLCKSA 859 (930)
Q Consensus 839 g~~ls~~vf~~E~~~~~~~~~ 859 (930)
|+++.+++.+.-.+|.++|+.
T Consensus 20 Gvll~vi~~l~~~~~~RRR~~ 40 (44)
T 2jwa_A 20 GILLVVVLGVVFGILIKRRQQ 40 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHhheehhhh
Confidence 333333333444444444443
No 401
>1vsq_C Mannose-specific phosphotransferase enzyme IIB component; sugar transport, complex (transferase/phosphocarrier, cytoplasm, membrane; HET: NEP; NMR {Escherichia coli} PDB: 2jzn_C 2jzo_D 2jzh_A
Probab=21.49 E-value=1.4e+02 Score=27.18 Aligned_cols=80 Identities=10% Similarity=0.057 Sum_probs=56.0
Q ss_pred HHHHHHHHHhcCccEEEEEEEcCccccchHHHHHHHHhhcceEEEEEEecCCCCCCChhHHHHHHHHHHhCCceEEEEEc
Q 002364 152 MTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHV 231 (930)
Q Consensus 152 ~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~ 231 (930)
++....+.++++.+++.++- |..........+.....-.|+++... +.++....+.+-+..+.++++++-
T Consensus 18 GQV~t~W~~~~~~~~IiVvn-D~vA~D~~~k~~lk~a~P~gvk~~i~---------sve~ai~~~~~~~~~~~~v~ll~k 87 (165)
T 1vsq_C 18 GQVATRWTKETNVSRIIVVS-DEVAADTVRKTLLTQVAPPGVTAHVV---------DVAKMIRVYNNPKYAGERVMLLFT 87 (165)
T ss_dssp TTHHHHHHHHTTCSEEEEEC-HHHHTCHHHHHHHHHTCCTTCEEEEE---------CHHHHHHHHTCGGGTTCEEEEEES
T ss_pred hheeeeeccccCCCEEEEeC-ccccCCHHHHHHHHhcCCCCCeEEEE---------EHHHHHHHHhccccCCcEEEEEEC
Confidence 56778889999999998873 33334445566666666678877642 245555555554456789999999
Q ss_pred ChhhHHHHHH
Q 002364 232 SPSLGFQVFS 241 (930)
Q Consensus 232 ~~~~~~~~~~ 241 (930)
++.++..+++
T Consensus 88 ~p~d~~~lve 97 (165)
T 1vsq_C 88 NPTDVERLVE 97 (165)
T ss_dssp SHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 9999887753
No 402
>2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix}
Probab=21.41 E-value=5.9e+02 Score=25.59 Aligned_cols=132 Identities=8% Similarity=-0.034 Sum_probs=77.4
Q ss_pred ChHHHHHHHHHHHhcCcE-EEEcCC--ChhHHHHHHHhhccCCCcEEecccCCCCCCCCCCCceEeecCCchHHHHHHHH
Q 002364 81 SGFIGMVEALRFMETDIV-AIIGPQ--CSTVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAE 157 (930)
Q Consensus 81 ~~~~a~~~a~~li~~~v~-aiiGp~--~s~~~~~v~~~~~~~~iP~is~~a~~~~l~~~~~p~~~r~~p~~~~~~~ai~~ 157 (930)
.+..+...+.++++.++. +|++.. .......+...+.+.++.++.+.+.. +-+.. ....-+.|..
T Consensus 80 p~~~~~~~v~ea~~~Gi~~vVi~t~G~~~~~~~~l~~~A~~~gi~viGPNc~G--ii~~~-~~~~~~~~~~--------- 147 (297)
T 2yv2_A 80 PAPFAPDAVYEAVDAGIRLVVVITEGIPVHDTMRFVNYARQKGATIIGPNCPG--AITPG-QAKVGIMPGH--------- 147 (297)
T ss_dssp CGGGHHHHHHHHHHTTCSEEEECCCCCCHHHHHHHHHHHHHHTCEEECSSSCE--EEETT-TEEEESCCGG---------
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCEEEcCCCCe--eEccc-ccceeecccC---------
Confidence 456666777778877776 444432 23345678888888899888665321 11110 0011111211
Q ss_pred HHHhcCccEEEEEEEcCccccchHHHHHHHHhhcceEEEEEEecCCCCCCC-hhHHHHHHHHHHh-CCceEEEEEcCh
Q 002364 158 MVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVN-TGYVMDLLVKVAL-MESRVIVLHVSP 233 (930)
Q Consensus 158 ~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~-~~~~~~~l~~l~~-~~~~viil~~~~ 233 (930)
...--+|++|.+.... ...+.+.+.+.|+-++....+-.. .. +.++...|+.+.+ .++++|+++...
T Consensus 148 ---~~~~G~va~vSqSG~l----~~~~~~~~~~~g~G~s~~vs~G~~--~~~~~~~~d~l~~~~~D~~T~~I~l~~E~ 216 (297)
T 2yv2_A 148 ---IFKEGGVAVVSRSGTL----TYEISYMLTRQGIGQSTVIGIGGD--PIVGLSFTEALKLFQEDPQTEALVLIGEI 216 (297)
T ss_dssp ---GCCEEEEEEEESCHHH----HHHHHHHHHHTTCCEEEEEECCSS--SSCSSCHHHHHHHHHTCTTCSEEEEEECS
T ss_pred ---CCCCCCEEEEECCHHH----HHHHHHHHHHcCCCeeEEEeeCCC--cCCCCCHHHHHHHHhcCCCCCEEEEEEee
Confidence 1233579998866653 345566777777777665555433 11 3467777777754 678999999875
No 403
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=21.39 E-value=1.1e+02 Score=30.77 Aligned_cols=80 Identities=8% Similarity=-0.041 Sum_probs=54.0
Q ss_pred cEEEEEEE--cCccccchHHHHHHHHhhcceEEEEEEecCCCCCCChhHHHHHHHHHHhCCceEEEEEcChhh-HHHHHH
Q 002364 165 NAVSVIFV--DNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSL-GFQVFS 241 (930)
Q Consensus 165 ~~v~ii~~--d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~-~~~~~~ 241 (930)
.+|+++.. +++|.......+.+++++.|..+.....-.. .+.......++.+.+.+.|.||+...... ....++
T Consensus 6 ~~Igvi~~~~~~~~~~~~~~g~~~~a~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~~~~~~ 82 (304)
T 3o1i_D 6 EKICAIYPHLKDSYWLSVNYGMVSEAEKQGVNLRVLEAGGY---PNKSRQEQQLALCTQWGANAIILGTVDPHAYEHNLK 82 (304)
T ss_dssp CEEEEEESCSCSHHHHHHHHHHHHHHHHHTCEEEEEECSST---TCHHHHHHHHHHHHHHTCSEEEECCSSTTSSTTTHH
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCeEEEEcCCCC---CCHHHHHHHHHHHHHcCCCEEEEeCCChhHHHHHHH
Confidence 57888874 3667778889999999999998775432211 12445566777777788999998754433 234566
Q ss_pred HHHHcCc
Q 002364 242 VAKYLGM 248 (930)
Q Consensus 242 ~a~~~g~ 248 (930)
++. .|+
T Consensus 83 ~~~-~~i 88 (304)
T 3o1i_D 83 SWV-GNT 88 (304)
T ss_dssp HHT-TTS
T ss_pred HHc-CCC
Confidence 666 664
No 404
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=21.37 E-value=5e+02 Score=25.18 Aligned_cols=114 Identities=13% Similarity=0.101 Sum_probs=61.4
Q ss_pred EEEEEeeCC-CcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCChHHHHHHHHHHHhc---CcEEEEcCCChhH
Q 002364 33 NVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMET---DIVAIIGPQCSTV 108 (930)
Q Consensus 33 ~IG~i~~~s-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~---~v~aiiGp~~s~~ 108 (930)
+||++.... ......-..|++-|+++. |.++. +.....+...+...+.++++. ++.||+.. +...
T Consensus 120 ~i~~i~~~~~~~~~~~R~~gf~~~l~~~--------g~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~ai~~~-~d~~ 188 (277)
T 3cs3_A 120 KVLLLSGPEKGYDSQERLAVSTRELTRF--------GIPYE--IIQGDFTEPSGYAAAKKILSQPQTEPVDVFAF-NDEM 188 (277)
T ss_dssp CEEEEECCTTSHHHHHHHHHHHHHHHHT--------TCCEE--EEECCSSHHHHHHHHHHHTTSCCCSSEEEEES-SHHH
T ss_pred eEEEEeCCccCccHHHHHHHHHHHHHHc--------CCCee--EEeCCCChhHHHHHHHHHHhcCCCCCcEEEEc-ChHH
Confidence 466665443 222344467777777663 22333 233344667777778888865 68999874 3455
Q ss_pred HHHHHHhhccCC--Cc----EEecccCCCCCCCCCCCceEeecCCchHHHHHHHHHH
Q 002364 109 AHIVSYVSNELQ--VP----LLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMV 159 (930)
Q Consensus 109 ~~~v~~~~~~~~--iP----~is~~a~~~~l~~~~~p~~~r~~p~~~~~~~ai~~~l 159 (930)
+..+...+.+.+ +| ++++.... ......|.+-....+...++...++++
T Consensus 189 a~g~~~al~~~g~~vP~di~vvg~d~~~--~~~~~~p~lttv~~~~~~~g~~a~~~l 243 (277)
T 3cs3_A 189 AIGVYKYVAETNYQMGKDIRIIGFDNSE--LGAFVQPRLATIAYSKHRWGMVAAEKI 243 (277)
T ss_dssp HHHHHHHHTTSSCCBTTTEEEECSSCCH--HHHHSSSCCBEEECCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCcEEEEEeCCcH--HHhccCCceeEEecCHHHHHHHHHHHH
Confidence 555666666654 34 45443221 111112334444455556666666654
No 405
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Probab=21.28 E-value=7e+02 Score=26.18 Aligned_cols=87 Identities=10% Similarity=0.079 Sum_probs=49.4
Q ss_pred CccEEEEEEEc-CccccchHHHHHHHHhhcceEEEEEEecCCCCCCChhHHHHHHHHHHhCCceEEEEEcC------hhh
Q 002364 163 GWNAVSVIFVD-NEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVS------PSL 235 (930)
Q Consensus 163 ~w~~v~ii~~d-~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~------~~~ 235 (930)
..+++.++|.. ....+..++.+.+.+.+.|.++.... + . ..+......++. ++|.||+.+. +..
T Consensus 255 ~~~kv~iiy~S~~GnT~~la~~i~~~l~~~g~~v~~~~-l--~----~~~~~~~~~~l~--~~D~iiigsP~y~~~~~~~ 325 (414)
T 2q9u_A 255 CQKKVTVVLDSMYGTTHRMALALLDGARSTGCETVLLE-M--T----SSDITKVALHTY--DSGAVAFASPTLNNTMMPS 325 (414)
T ss_dssp CCSEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEE-G--G----GCCHHHHHHHHH--TCSEEEEECCCBTTBCCHH
T ss_pred cCCeEEEEEECCCchHHHHHHHHHHHHHhCCCeEEEEE-c--C----cCCHHHHHHHHH--hCCEEEEEcCccCcCchHH
Confidence 35788888843 33334557778888887777654332 1 1 223444445554 4678887755 245
Q ss_pred HHHHHHHHHHcCc-ccCCeEEEEe
Q 002364 236 GFQVFSVAKYLGM-MGNGYVWIAT 258 (930)
Q Consensus 236 ~~~~~~~a~~~g~-~~~~~~~i~~ 258 (930)
...++.......+ .+.....+.+
T Consensus 326 ~k~fld~l~~~~~~~~K~~~~~~t 349 (414)
T 2q9u_A 326 VAAALNYVRGLTLIKGKPAFAFGA 349 (414)
T ss_dssp HHHHHHHHHHHTTTTTSBEEEEEE
T ss_pred HHHHHHHHHhhcccCCCEEEEEEe
Confidence 6667777665433 3344444444
No 406
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=21.23 E-value=1.1e+02 Score=30.68 Aligned_cols=80 Identities=5% Similarity=0.021 Sum_probs=46.8
Q ss_pred ccEEEEEEE--cCccccchHHHHHHHHhhcceEEEEEEecCCCCCCChhHHHHHHHHHHhCCceEEEEEcChhhHHHHHH
Q 002364 164 WNAVSVIFV--DNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFS 241 (930)
Q Consensus 164 w~~v~ii~~--d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~~~~ 241 (930)
-+.|+++.. +++|.......+.+++++.|..+... +... .+.......++.+...+.|.||+...... ...++
T Consensus 8 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~--~~~~--~~~~~~~~~~~~l~~~~vdgiI~~~~~~~-~~~~~ 82 (290)
T 3clk_A 8 SNVIAAVVSSVRTNFAQQILDGIQEEAHKNGYNLIIV--YSGS--ADPEEQKHALLTAIERPVMGILLLSIALT-DDNLQ 82 (290)
T ss_dssp CCEEEEECCCCSSSHHHHHHHHHHHHHHTTTCEEEEE--C------------CHHHHHHSSCCSEEEEESCC-----CHH
T ss_pred CCEEEEEeCCCCChHHHHHHHHHHHHHHHcCCeEEEE--eCCC--CCHHHHHHHHHHHHhcCCCEEEEecccCC-HHHHH
Confidence 357888874 46677788899999999999887643 0111 11223344567777788999998765432 24556
Q ss_pred HHHHcCc
Q 002364 242 VAKYLGM 248 (930)
Q Consensus 242 ~a~~~g~ 248 (930)
.+.+.|.
T Consensus 83 ~l~~~~i 89 (290)
T 3clk_A 83 LLQSSDV 89 (290)
T ss_dssp HHHCC--
T ss_pred HHHhCCC
Confidence 6665553
No 407
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=21.11 E-value=1.4e+02 Score=27.29 Aligned_cols=63 Identities=16% Similarity=0.093 Sum_probs=42.5
Q ss_pred cEEEEEEEcCcc--c---cchHHHHHHHHhhcceEEEEEEecCCCCCCChhHHHHHHHHHHhCCceEEEEEcC
Q 002364 165 NAVSVIFVDNEY--G---RNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVS 232 (930)
Q Consensus 165 ~~v~ii~~d~~~--g---~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~ 232 (930)
.++++|...|+- | ......+.+.+++.|.++.....++ .+ +.+...+++..+.++|+||+.+.
T Consensus 8 ~rv~ii~tGdEl~~G~i~Dsn~~~l~~~l~~~G~~v~~~~iv~----Dd-~~i~~al~~a~~~~~DlVittGG 75 (164)
T 3pzy_A 8 RSARVIIASTRASSGEYEDRCGPIITEWLAQQGFSSAQPEVVA----DG-SPVGEALRKAIDDDVDVILTSGG 75 (164)
T ss_dssp CEEEEEEECHHHHC----CCHHHHHHHHHHHTTCEECCCEEEC----SS-HHHHHHHHHHHHTTCSEEEEESC
T ss_pred CEEEEEEECCCCCCCceeeHHHHHHHHHHHHCCCEEEEEEEeC----CH-HHHHHHHHHHHhCCCCEEEECCC
Confidence 578887765432 2 2234678888999998887655444 34 67777777766557899998754
No 408
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=20.97 E-value=3.1e+02 Score=21.65 Aligned_cols=100 Identities=18% Similarity=0.181 Sum_probs=60.2
Q ss_pred CCceEeecCCchHHHHHHHHHHHhcCccEEEEEEEcCccccchHHHHHHHHhhcceEEEEEEecCCCCCCChhHHHHHHH
Q 002364 138 YPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLV 217 (930)
Q Consensus 138 ~p~~~r~~p~~~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~ 217 (930)
..+-.|+.-+....-..+-++++.|+.+-|.++.+|..|.+..+ .+...+ |.++... .+..+ ...+...-+
T Consensus 25 ngfkvrtvrspqelkdsieelvkkynativvvvvddkewaekai-rfvksl---gaqvlii-iydqd----qnrleefsr 95 (134)
T 2l69_A 25 NGFKVRTVRSPQELKDSIEELVKKYNATIVVVVVDDKEWAEKAI-RFVKSL---GAQVLII-IYDQD----QNRLEEFSR 95 (134)
T ss_dssp TTCEEEEECSHHHHHHHHHHHTTCCCCEEEEEECSSHHHHHHHH-HHHHHH---CCCCEEE-EECSC----HHHHHHHHH
T ss_pred cCceEEEecCHHHHHHHHHHHHHHhCCeEEEEEEccHHHHHHHH-HHHHhc---CCeEEEE-EEeCc----hhHHHHHHH
Confidence 45668999999999999999999999888887776666654433 333334 3333221 23322 445555555
Q ss_pred HHHhCCceEEEEEcChhhHHHHH-HHHHHcC
Q 002364 218 KVALMESRVIVLHVSPSLGFQVF-SVAKYLG 247 (930)
Q Consensus 218 ~l~~~~~~viil~~~~~~~~~~~-~~a~~~g 247 (930)
+++..+-.+-- ..+|++...-+ +-.++.|
T Consensus 96 evrrrgfevrt-vtspddfkkslerlirevg 125 (134)
T 2l69_A 96 EVRRRGFEVRT-VTSPDDFKKSLERLIREVG 125 (134)
T ss_dssp HHHHTTCCEEE-ESSHHHHHHHHHHHHHHHC
T ss_pred HHHhcCceEEE-ecChHHHHHHHHHHHHHhc
Confidence 66666555433 45566555433 3344444
No 409
>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}
Probab=20.94 E-value=2.2e+02 Score=28.59 Aligned_cols=77 Identities=17% Similarity=0.110 Sum_probs=55.4
Q ss_pred CCeEEE--eCchHHHHHHHhhccccccceecCCHHHHHHHHhcCCCCCceEEEEecc---------hhHHHHHhcCccEE
Q 002364 693 DPIGYQ--EGSFAEYYLSQELNISKSRLVALRTPEDYAKALKDGPGKGGVAAVVDER---------PYVELFLSSQCSFR 761 (930)
Q Consensus 693 ~~v~~~--~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~i~~~---------~~~~~~~~~~~~l~ 761 (930)
.+|++. .|++.+.-..+.+ .++++.+.++.++++.+ |+++..+... ..++.+.. .+++
T Consensus 7 ~~iaylGp~Gtfs~~Aa~~~f-----~~~p~~s~~~vf~aV~~----g~~d~gVvPiENS~~G~V~~t~DlL~~--~~l~ 75 (283)
T 2qmx_A 7 WLIAYQGEPGAYSEIAALRFG-----EPLPCESFDDVFSAVTE----QKADYAVIPIENSLGGSIHQNYDLLLR--RPVV 75 (283)
T ss_dssp CEEEEESCTTSHHHHHHHHHS-----EEEEESCHHHHHHHHHT----TSCSEEEEEEEESSSCBCHHHHHHHHH--SSEE
T ss_pred cEEEEECCCCCHHHHHHHHHh-----HhCcCCCHHHHHHHHHC----CCCCEEEEeehhcCCCccHHHHHHhhc--CCcE
Confidence 457886 5777776664433 57789999999999999 7877665542 13344444 4799
Q ss_pred EeCccccccceeeeeCCCC
Q 002364 762 IVGQEFTKSGWGFAFPRDS 780 (930)
Q Consensus 762 ~~~~~~~~~~~~~~~~k~s 780 (930)
++++.+.....++...++.
T Consensus 76 I~gE~~l~I~h~Ll~~~g~ 94 (283)
T 2qmx_A 76 ILAETFVKVEHCLLGLPGA 94 (283)
T ss_dssp EEEEEEEECCCEEEECSSC
T ss_pred EEEEEEEeeeeeEecCCCC
Confidence 9999888888888877764
No 410
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=20.88 E-value=1.6e+02 Score=27.93 Aligned_cols=97 Identities=15% Similarity=0.090 Sum_probs=53.5
Q ss_pred HHHHHHHHHhcCccEEEEEEEcCc--cccchHHHHHHHHhhcceEEEEEEecCCCCCCChhHHHHHHHHHHhCCceEEEE
Q 002364 152 MTAVAEMVSYYGWNAVSVIFVDNE--YGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVL 229 (930)
Q Consensus 152 ~~ai~~~l~~~~w~~v~ii~~d~~--~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil 229 (930)
...+.+++....-+++++|-.... -..+..+.+++++++.|.++.. +.... .+.+++. +.++ ++|.|++
T Consensus 15 ~~~~~~f~~~~~~~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~---~~i~~-~~~~~~~---~~l~--~ad~I~l 85 (206)
T 3l4e_A 15 VPLFTEFESNLQGKTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEE---LDIAT-ESLGEIT---TKLR--KNDFIYV 85 (206)
T ss_dssp HHHHHHHSCCCTTCEEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEE---CCTTT-SCHHHHH---HHHH--HSSEEEE
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEE---EEecC-CChHHHH---HHHH--hCCEEEE
Confidence 344455555555689998842111 1124578889999999987653 22110 1233443 3443 3678888
Q ss_pred EcChhhHHHHHHHHHHcCccc-------CCeEEEEeC
Q 002364 230 HVSPSLGFQVFSVAKYLGMMG-------NGYVWIATD 259 (930)
Q Consensus 230 ~~~~~~~~~~~~~a~~~g~~~-------~~~~~i~~~ 259 (930)
.+ .+...+++..++.|+.. .+..++++.
T Consensus 86 ~G--G~~~~l~~~L~~~gl~~~l~~~~~~G~p~~G~s 120 (206)
T 3l4e_A 86 TG--GNTFFLLQELKRTGADKLILEEIAAGKLYIGES 120 (206)
T ss_dssp CC--SCHHHHHHHHHHHTHHHHHHHHHHTTCEEEEET
T ss_pred CC--CCHHHHHHHHHHCChHHHHHHHHHcCCeEEEEC
Confidence 55 33345666666555432 345566665
No 411
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=20.72 E-value=6.6e+02 Score=25.31 Aligned_cols=116 Identities=14% Similarity=0.043 Sum_probs=67.7
Q ss_pred EEEEEEeeCC-CcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCChHHHHHHHHHHHhcC-cEEEEcCCChhHH
Q 002364 32 VNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETD-IVAIIGPQCSTVA 109 (930)
Q Consensus 32 i~IG~i~~~s-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~-v~aiiGp~~s~~~ 109 (930)
=+||++.... ......-..|+..|+++. |.. .+......+...+.+.+.+++... +.||+.. +...+
T Consensus 175 ~~I~~i~~~~~~~~~~~R~~Gf~~al~~~--------g~~--~~~~~~~~~~~~~~~~~~~ll~~~~~~ai~~~-nd~~A 243 (333)
T 3jvd_A 175 MNIAALVGEESLSTTQERMRGISHAASIY--------GAE--VTFHFGHYSVESGEEMAQVVFNNGLPDALIVA-SPRLM 243 (333)
T ss_dssp CEEEEEESCTTSHHHHHHHHHHHHHHHHT--------TCE--EEEEECCSSHHHHHHHHHHHHHTCCCSEEEEC-CHHHH
T ss_pred CeEEEEeCCCCCccHHHHHHHHHHHHHHC--------CCC--EEEecCCCCHHHHHHHHHHHhcCCCCcEEEEC-CHHHH
Confidence 3577776543 222344567777777663 222 222214456777888888888764 8888874 44555
Q ss_pred HHHHHhhccCCC------cEEecccCCCCCCCCCCCceEeecCCchHHHHHHHHHHH
Q 002364 110 HIVSYVSNELQV------PLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVS 160 (930)
Q Consensus 110 ~~v~~~~~~~~i------P~is~~a~~~~l~~~~~p~~~r~~p~~~~~~~ai~~~l~ 160 (930)
..+...+.+.++ .++++.... +.....|-+-.+..+...++...+++|.
T Consensus 244 ~g~~~al~~~G~~vP~disvig~D~~~--~~~~~~p~lttv~~~~~~~g~~Av~~L~ 298 (333)
T 3jvd_A 244 AGVMRAFTRLNVRVPHDVVIGGYDDPE--WYSFVGAGITTFVPPHEEMGKEAVRLLV 298 (333)
T ss_dssp HHHHHHHHHTTCCTTTTCEEEEESCCG--GGGGSTTSCEEEECCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCceEEEEECChH--HHHhcCCCceEEecCHHHHHHHHHHHHH
Confidence 555566655543 366654322 3333345566666777777887777653
No 412
>1twy_A ABC transporter, periplasmic substrate-binding PR; nysgxrc target, structural genomics, protei structure initiative, PSI; 1.65A {Vibrio cholerae o1 biovar eltor} SCOP: c.94.1.1
Probab=20.66 E-value=1.5e+02 Score=29.12 Aligned_cols=60 Identities=5% Similarity=-0.022 Sum_probs=30.8
Q ss_pred CCCCceEEEEEEeeCCCcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcC
Q 002364 26 SARPAVVNVGALFTLDSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGP 103 (930)
Q Consensus 26 ~~~~~~i~IG~i~~~s~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp 103 (930)
....++|+||+.... + .-+.-.+.++.+.. |+.++++...++ .. ....+.+.++++.|+.
T Consensus 24 ~~~~g~l~Ig~~~~~----~----~~l~~~l~~f~~~~---P~i~v~i~~~~~----~~---~~~~l~~g~~Di~i~~ 83 (290)
T 1twy_A 24 FVQASEITISGSTSV----A----RIMDVLAEKYNQQH---PETYVAVQGVGS----TA---GISLLKKGVADIAMTS 83 (290)
T ss_dssp ----CEEEEEECHHH----H----HHHHHHHHHHHHHC---TTCEEEEEESCH----HH---HHHHHHTTSCSEEEES
T ss_pred cccCCCEEEecCcch----H----HHHHHHHHHHHhhC---CCceEEEEecCc----HH---HHHHHhcCCCcEEEec
Confidence 344578999974321 1 23444556666543 678888765322 11 2234555567776653
No 413
>4exl_A PBP 1, phosphate-binding protein PSTS 1; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; 1.70A {Streptococcus pneumoniae}
Probab=20.63 E-value=1.5e+02 Score=29.53 Aligned_cols=72 Identities=10% Similarity=0.043 Sum_probs=45.5
Q ss_pred eeHHHHHHHHHhC-CCcccEEEEecCCCCCCCCHHHHHHHHHcCcccEEEeeeeeec-Cceeeee-ecccccccceEEEE
Q 002364 493 FCIDVFTAAVNLL-PYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGDITIVT-NRTKIVD-FSQPYAASGLVVVV 569 (930)
Q Consensus 493 ~~~dl~~~l~~~l-~f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~t~-~r~~~vd-ft~p~~~~~~~~lv 569 (930)
+.-.++..+.++. +.+ +.+.. +.-.+.+.+|.+|++|+++.+..... +..+.-+ ...|+..+++++++
T Consensus 17 ~~~~~~~~F~~~~P~v~--i~v~~-------~gS~~gi~~l~~g~~Dig~~~~~~~~~~~~~~~~l~~~~ia~d~lvvvv 87 (265)
T 4exl_A 17 LVEVAADEFGTIHVGKT--VNVQG-------GGSGTGLSQVQSGAVDIGNSDVFAEEKDGIDASALVDHKVAVAGLALIV 87 (265)
T ss_dssp HHHHHHHHHHHHSTTCE--EEEEE-------ECHHHHHHHHHTTSSSEEEESSCGGGSTTCCGGGEECCEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHCCCce--EEEee-------CCcHHHHHHHHcCCCccccccCCcchhhcccccCceEeeEEEEEEEEEE
Confidence 3345677777776 544 44433 34678899999999999876432221 0111111 25789999999999
Q ss_pred eccC
Q 002364 570 PFRK 573 (930)
Q Consensus 570 ~~~~ 573 (930)
++..
T Consensus 88 ~~~~ 91 (265)
T 4exl_A 88 NKEV 91 (265)
T ss_dssp CTTC
T ss_pred CCCC
Confidence 8654
No 414
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=20.10 E-value=2.8e+02 Score=27.31 Aligned_cols=64 Identities=9% Similarity=0.070 Sum_probs=45.8
Q ss_pred cEEEEEEE--cCccccchHHHHHHHHhhcceEEEEEEecCCCCCCChhHHHHHHHHHHhCCceEEEEEcCh
Q 002364 165 NAVSVIFV--DNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSP 233 (930)
Q Consensus 165 ~~v~ii~~--d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~ 233 (930)
+.|+++.. +++|.......+.+++++.|..+.... .. .+.......++.+.+.+.|.||+....
T Consensus 8 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~---~~--~~~~~~~~~~~~l~~~~vdgii~~~~~ 73 (289)
T 1dbq_A 8 KSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGN---AW--NNLEKQRAYLSMMAQKRVDGLLVMCSE 73 (289)
T ss_dssp CEEEEEESCTTSHHHHHHHHHHHHHHHHHTCEEEEEE---CT--TCHHHHHHHHHHHHHTTCSEEEEECSC
T ss_pred CEEEEEeCCCCChHHHHHHHHHHHHHHHcCCeEEEEc---CC--CChHHHHHHHHHHHhCCCCEEEEEecc
Confidence 57888874 456777788899999999998876532 11 224555566778777889999987543
No 415
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=20.01 E-value=2.1e+02 Score=28.41 Aligned_cols=81 Identities=11% Similarity=0.037 Sum_probs=51.8
Q ss_pred cEEEEEEE--cCccccchHHHHHHHHhhcceEEEEEEecCCCCCCChhHHHHHHHHHHhCCceEEEEEcChh-hHHHHHH
Q 002364 165 NAVSVIFV--DNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPS-LGFQVFS 241 (930)
Q Consensus 165 ~~v~ii~~--d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~-~~~~~~~ 241 (930)
+.++++.. +++|.......+.+++++.|..+....... . .+...-...++.+...+.|.||+..... .....++
T Consensus 2 ~~Igvi~~~~~~~f~~~~~~gi~~~a~~~g~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~vdgiIi~~~~~~~~~~~~~ 78 (288)
T 1gud_A 2 AEYAVVLKTLSNPFWVDMKKGIEDEAKTLGVSVDIFASPS-E--GDFQSQLQLFEDLSNKNYKGIAFAPLSSVNLVMPVA 78 (288)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHHTCCEEEEECSS-T--TCHHHHHHHHHHHHTSSEEEEEECCSSSSTTHHHHH
T ss_pred cEEEEEeCCCCchHHHHHHHHHHHHHHHcCCEEEEeCCCC-C--CCHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHH
Confidence 45777764 456777788889999999998776532101 1 1234445567777778899998865432 2234567
Q ss_pred HHHHcCc
Q 002364 242 VAKYLGM 248 (930)
Q Consensus 242 ~a~~~g~ 248 (930)
++.+.|+
T Consensus 79 ~~~~~~i 85 (288)
T 1gud_A 79 RAWKKGI 85 (288)
T ss_dssp HHHHTTC
T ss_pred HHHHCCC
Confidence 7776664
Done!