BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002366
(930 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1PS3|A Chain A, Golgi Alpha-mannosidase Ii In Complex With Kifunensine
Length = 1045
Score = 230 bits (587), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 204/746 (27%), Positives = 331/746 (44%), Gaps = 81/746 (10%)
Query: 56 GGWCMHDEATTHYVDMIDQTTLGHHYIKQHFNKTPKAGWQIDPFGHSAVQAYLLGVELGF 115
GGW M DEA +H+ +++ Q T G ++KQ N TP A W IDPFGHS Y+L + GF
Sbjct: 163 GGWVMPDEANSHWRNVLLQLTEGQTWLKQFMNVTPTASWAIDPFGHSPTMPYILQ-KSGF 221
Query: 116 DSVHFARIDYQDRAKRKEDKSLEVIWRGSKTFGSSSQIFTNAFPVH-YSPP--------- 165
++ R Y + + + + LE +WR + +FT+ P + Y P
Sbjct: 222 KNMLIQRTHYSVKKELAQQRQLEFLWRQIWDNKGDTALFTHMMPFYSYDIPHTCGPDPKV 281
Query: 166 -SGFHFELTDDFD---PVQDNP-LLDGYNVEQWVNDFIDAALTQANVTRDNHIMWTMGDD 220
F F+ F P + P + NV + +D +A + R N ++ +GDD
Sbjct: 282 CCQFDFKRMGSFGLSCPWKVPPRTISDQNVAARSDLLVDQWKKKAELYRTNVLLIPLGDD 341
Query: 221 FQYQYAESWFKQ---MDKLIHYVNKGGRVN--ALYSTPSLY----TEAKNAANGPWPLKT 271
F+++ W Q ++L ++N N A + T Y +A+ A +P +
Sbjct: 342 FRFKQNTEWDVQRVNYERLFEHINSQAHFNVQAQFGTLQEYFDAVHQAERAGQAEFPTLS 401
Query: 272 DDYFPYADRRNAYWTGFFTSRPALKGYVRVLSGFYLASRQLEFLAGKKSPGPTTSALGDA 331
D+F YADR + YW+G++TSRP K RVL + A+ L L A
Sbjct: 402 GDFFTYADRSDNYWSGYYTSRPYHKRMDRVLMHYVRAAEMLSAWHSWDGMARIEERLEQA 461
Query: 332 ---LGIAQHHDAVTGTAKQHTTNDYAKRLAIGXXXXXXXXXXXXXXXXXRKSGHQCTKPA 388
L + QHHD +TGTAK H DY +R+ + S P
Sbjct: 462 RRELSLFQHHDGITGTAKTHVVVDYEQRMQEALKACQMVMQQSVYRLLTKPS---IYSPD 518
Query: 389 STFSQCPLLNISY----CPPTEKGIPEGKNLV----VAAYNPLGWNRTDIIRIPVNDANL 440
+FS L + + + I G++++ V +N L R ++ V+ +
Sbjct: 519 FSFSYFTLDDSRWPGSGVEDSRTTIILGEDILPSKHVVMHNTLPHWREQLVDFYVSSPFV 578
Query: 441 IVKDPLGNAINVQYVNLDNVTSNLRKFYTEAYLGQSSKRVPRYWLLFQVTVPPLGWNTYF 500
V D N + Q + V S T+ Q S +Y ++F+ VPP+G TY
Sbjct: 579 SVTDLANNPVEAQ---VSPVWSWHHDTLTKTIHPQGS--TTKYRIIFKARVPPMGLATYV 633
Query: 501 I----------SRAAGKVKRRKGFFLAADS---------PQDKTVEVGPGNLKMSFSRTT 541
+ S A+ + R+ L P++ ++ VG G ++FS
Sbjct: 634 LTISDSKPEHTSYASNLLLRKNPTSLPLGQYPEDVKFGDPREISLRVGNGP-TLAFSE-Q 691
Query: 542 GQLKRMYNSRTGVDVPIQQSFLWYGSMVDTQSSGAYIFRPNG-AQPNVVSRSVPIKIIRG 600
G LK + ++ VP+ FL YG SGAY+F PNG A P + + V + + +G
Sbjct: 692 GLLKSIQLTQDSPHVPVHFKFLKYGVRSHGDRSGAYLFLPNGPASPVELGQPV-VLVTKG 750
Query: 601 PMVDEVHQQFNSWIYQVTRLYIDKEHAEVEYTIGPIPTEDSVGKEVISRMTANMVTEKVF 660
+ V S ++Q I + A + I + D+ E++ R+ ++ + +F
Sbjct: 751 KLESSVSVGLPSVVHQT----IMRGGAPEIRNLVDIGSLDNT--EIVMRLETHIDSGDIF 804
Query: 661 YTDSNGRDFLKRVRDYRADWSLQVNEPVAGNYYPLNLGIFITDKKSEFSVLVDRATGGAS 720
YTD NG F+KR R + P+ NYYP+ G+FI D + ++L + GG+S
Sbjct: 805 YTDLNGLQFIKRRRLDKL--------PLQANYYPIPSGMFIEDANTRLTLLTGQPLGGSS 856
Query: 721 IKDGQVEIMLHRRMLADDGRGVGEAL 746
+ G++EIM RR+ +DD RG+G+ +
Sbjct: 857 LASGELEIMQDRRLASDDERGLGQGV 882
>pdb|1HXK|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With
Deoxymannojirimicin
pdb|1HWW|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With Swainsonine
Length = 1015
Score = 230 bits (587), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 204/746 (27%), Positives = 331/746 (44%), Gaps = 81/746 (10%)
Query: 56 GGWCMHDEATTHYVDMIDQTTLGHHYIKQHFNKTPKAGWQIDPFGHSAVQAYLLGVELGF 115
GGW M DEA +H+ +++ Q T G ++KQ N TP A W IDPFGHS Y+L + GF
Sbjct: 133 GGWVMPDEANSHWRNVLLQLTEGQTWLKQFMNVTPTASWAIDPFGHSPTMPYILQ-KSGF 191
Query: 116 DSVHFARIDYQDRAKRKEDKSLEVIWRGSKTFGSSSQIFTNAFPVH-YSPP--------- 165
++ R Y + + + + LE +WR + +FT+ P + Y P
Sbjct: 192 KNMLIQRTHYSVKKELAQQRQLEFLWRQIWDNKGDTALFTHMMPFYSYDIPHTCGPDPKV 251
Query: 166 -SGFHFELTDDFD---PVQDNP-LLDGYNVEQWVNDFIDAALTQANVTRDNHIMWTMGDD 220
F F+ F P + P + NV + +D +A + R N ++ +GDD
Sbjct: 252 CCQFDFKRMGSFGLSCPWKVPPRTISDQNVAARSDLLVDQWKKKAELYRTNVLLIPLGDD 311
Query: 221 FQYQYAESWFKQ---MDKLIHYVNKGGRVN--ALYSTPSLY----TEAKNAANGPWPLKT 271
F+++ W Q ++L ++N N A + T Y +A+ A +P +
Sbjct: 312 FRFKQNTEWDVQRVNYERLFEHINSQAHFNVQAQFGTLQEYFDAVHQAERAGQAEFPTLS 371
Query: 272 DDYFPYADRRNAYWTGFFTSRPALKGYVRVLSGFYLASRQLEFLAGKKSPGPTTSALGDA 331
D+F YADR + YW+G++TSRP K RVL + A+ L L A
Sbjct: 372 GDFFTYADRSDNYWSGYYTSRPYHKRMDRVLMHYVRAAEMLSAWHSWDGMARIEERLEQA 431
Query: 332 ---LGIAQHHDAVTGTAKQHTTNDYAKRLAIGXXXXXXXXXXXXXXXXXRKSGHQCTKPA 388
L + QHHD +TGTAK H DY +R+ + S P
Sbjct: 432 RRELSLFQHHDGITGTAKTHVVVDYEQRMQEALKACQMVMQQSVYRLLTKPS---IYSPD 488
Query: 389 STFSQCPLLNISY----CPPTEKGIPEGKNLV----VAAYNPLGWNRTDIIRIPVNDANL 440
+FS L + + + I G++++ V +N L R ++ V+ +
Sbjct: 489 FSFSYFTLDDSRWPGSGVEDSRTTIILGEDILPSKHVVMHNTLPHWREQLVDFYVSSPFV 548
Query: 441 IVKDPLGNAINVQYVNLDNVTSNLRKFYTEAYLGQSSKRVPRYWLLFQVTVPPLGWNTYF 500
V D N + Q + V S T+ Q S +Y ++F+ VPP+G TY
Sbjct: 549 SVTDLANNPVEAQ---VSPVWSWHHDTLTKTIHPQGS--TTKYRIIFKARVPPMGLATYV 603
Query: 501 I----------SRAAGKVKRRKGFFLAADS---------PQDKTVEVGPGNLKMSFSRTT 541
+ S A+ + R+ L P++ ++ VG G ++FS
Sbjct: 604 LTISDSKPEHTSYASNLLLRKNPTSLPLGQYPEDVKFGDPREISLRVGNGP-TLAFSE-Q 661
Query: 542 GQLKRMYNSRTGVDVPIQQSFLWYGSMVDTQSSGAYIFRPNG-AQPNVVSRSVPIKIIRG 600
G LK + ++ VP+ FL YG SGAY+F PNG A P + + V + + +G
Sbjct: 662 GLLKSIQLTQDSPHVPVHFKFLKYGVRSHGDRSGAYLFLPNGPASPVELGQPV-VLVTKG 720
Query: 601 PMVDEVHQQFNSWIYQVTRLYIDKEHAEVEYTIGPIPTEDSVGKEVISRMTANMVTEKVF 660
+ V S ++Q I + A + I + D+ E++ R+ ++ + +F
Sbjct: 721 KLESSVSVGLPSVVHQT----IMRGGAPEIRNLVDIGSLDNT--EIVMRLETHIDSGDIF 774
Query: 661 YTDSNGRDFLKRVRDYRADWSLQVNEPVAGNYYPLNLGIFITDKKSEFSVLVDRATGGAS 720
YTD NG F+KR R + P+ NYYP+ G+FI D + ++L + GG+S
Sbjct: 775 YTDLNGLQFIKRRRLDKL--------PLQANYYPIPSGMFIEDANTRLTLLTGQPLGGSS 826
Query: 721 IKDGQVEIMLHRRMLADDGRGVGEAL 746
+ G++EIM RR+ +DD RG+G+ +
Sbjct: 827 LASGELEIMQDRRLASDDERGLGQGV 852
>pdb|3DX3|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With Mannostatin
Analog (1r,2r,
3s,4r,5r)-5-Aminocyclopentane-1,2,3,4-Tetraol
Length = 1045
Score = 230 bits (586), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 204/746 (27%), Positives = 331/746 (44%), Gaps = 81/746 (10%)
Query: 56 GGWCMHDEATTHYVDMIDQTTLGHHYIKQHFNKTPKAGWQIDPFGHSAVQAYLLGVELGF 115
GGW M DEA +H+ +++ Q T G ++KQ N TP A W IDPFGHS Y+L + GF
Sbjct: 163 GGWVMPDEANSHWRNVLLQLTEGQTWLKQFMNVTPTASWAIDPFGHSPTMPYILQ-KSGF 221
Query: 116 DSVHFARIDYQDRAKRKEDKSLEVIWRGSKTFGSSSQIFTNAFPVH-YSPP--------- 165
++ R Y + + + + LE +WR + +FT+ P + Y P
Sbjct: 222 KNMLIQRTHYSVKKELAQQRQLEFLWRQIWDNKGDTALFTHMMPFYSYDIPHTCGPDPKV 281
Query: 166 -SGFHFELTDDFD---PVQDNP-LLDGYNVEQWVNDFIDAALTQANVTRDNHIMWTMGDD 220
F F+ F P + P + NV + +D +A + R N ++ +GDD
Sbjct: 282 CCQFDFKRMGSFGLSCPWKVPPRTISDQNVAARSDLLVDQWKKKAELYRTNVLLIPLGDD 341
Query: 221 FQYQYAESWFKQ---MDKLIHYVNKGGRVN--ALYSTPSLY----TEAKNAANGPWPLKT 271
F+++ W Q ++L ++N N A + T Y +A+ A +P +
Sbjct: 342 FRFKQNTEWDVQRVNYERLFEHINSQAHFNVQAQFGTLQEYFDAVHQAERAGQAEFPTLS 401
Query: 272 DDYFPYADRRNAYWTGFFTSRPALKGYVRVLSGFYLASRQLEFLAGKKSPGPTTSALGDA 331
D+F YADR + YW+G++TSRP K RVL + A+ L L A
Sbjct: 402 GDFFTYADRSDNYWSGYYTSRPYHKRMDRVLMHYVRAAEMLSAWHSWDGMARIEERLEQA 461
Query: 332 ---LGIAQHHDAVTGTAKQHTTNDYAKRLAIGXXXXXXXXXXXXXXXXXRKSGHQCTKPA 388
L + QHHD +TGTAK H DY +R+ + S P
Sbjct: 462 RRELSLFQHHDGITGTAKTHVVVDYEQRMQEALKACQMVMQQSVYRLLTKPS---IYSPD 518
Query: 389 STFSQCPLLNISY----CPPTEKGIPEGKNLV----VAAYNPLGWNRTDIIRIPVNDANL 440
+FS L + + + I G++++ V +N L R ++ V+ +
Sbjct: 519 FSFSYFTLDDSRWPGSGVEDSRTTIILGEDILPSKHVVMHNTLPHWREQLVDFYVSSPFV 578
Query: 441 IVKDPLGNAINVQYVNLDNVTSNLRKFYTEAYLGQSSKRVPRYWLLFQVTVPPLGWNTYF 500
V D N + Q + V S T+ Q S +Y ++F+ VPP+G TY
Sbjct: 579 SVTDLANNPVEAQ---VSPVWSWHHDTLTKTIHPQGS--TTKYRIIFKARVPPMGLATYV 633
Query: 501 I----------SRAAGKVKRRKGFFLAADS---------PQDKTVEVGPGNLKMSFSRTT 541
+ S A+ + R+ L P++ ++ VG G ++FS
Sbjct: 634 LTISDSKPEHTSYASNLLLRKNPTSLPLGQYPEDVKFGDPREISLRVGNGP-TLAFSE-Q 691
Query: 542 GQLKRMYNSRTGVDVPIQQSFLWYGSMVDTQSSGAYIFRPNG-AQPNVVSRSVPIKIIRG 600
G LK + ++ VP+ FL YG SGAY+F PNG A P + + V + + +G
Sbjct: 692 GLLKSIQLTQDSPHVPVHFKFLKYGVRSHGDRSGAYLFLPNGPASPVELGQPV-VLVTKG 750
Query: 601 PMVDEVHQQFNSWIYQVTRLYIDKEHAEVEYTIGPIPTEDSVGKEVISRMTANMVTEKVF 660
+ V S ++Q I + A + I + D+ E++ R+ ++ + +F
Sbjct: 751 KLESSVSVGLPSVVHQT----IMRGGAPEIRNLVDIGSLDNT--EIVMRLETHIDSGDIF 804
Query: 661 YTDSNGRDFLKRVRDYRADWSLQVNEPVAGNYYPLNLGIFITDKKSEFSVLVDRATGGAS 720
YTD NG F+KR R + P+ NYYP+ G+FI D + ++L + GG+S
Sbjct: 805 YTDLNGLQFIKRRRLDKL--------PLQANYYPIPSGMFIEDANTRLTLLTGQPLGGSS 856
Query: 721 IKDGQVEIMLHRRMLADDGRGVGEAL 746
+ G++EIM RR+ +DD RG+G+ +
Sbjct: 857 LASGELEIMQDRRLASDDERGLGQGV 882
>pdb|1QWN|A Chain A, Golgi Alpha-Mannosidase Ii Covalent Intermediate Complex
With 5- Fluoro-Gulosyl-Fluoride
pdb|1R33|A Chain A, Golgi Alpha-Mannosidase Ii Complex With
5-Thio-D-Mannopyranosylamine
pdb|1R34|A Chain A, Golgi Alpha-Mannosidase Ii Complex With 5-Thio-D-
Mannopyranosylamidinium Salt
pdb|1TQS|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With Salacinol
pdb|1TQT|A Chain A, Golgi Alpha-mannosidase Ii In Complex With A Diastereomer
Of Salacinol
pdb|1TQU|A Chain A, Golgi Alpha-mannosidase Ii In Complex With The Salacinol
Analog Ghavamiol
pdb|1TQV|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With
Seleno-Salacinol (Blintol)
pdb|1TQW|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With A Diastereomer
Of Seleno- Salacinol
pdb|2ALW|A Chain A, Golgi Alpha-Mannosidase Ii Complex With Noeuromycin
pdb|2F7O|A Chain A, Golgi Alpha-mannosidase Ii Complex With Mannostatin A
pdb|2F7P|A Chain A, Golgi Alpha-Mannosidase Ii Complex With Benzyl-Mannostatin
A
pdb|2F18|A Chain A, Golgi Alpha-Mannosidase Ii Complex With
(2r,3r,4s)-2-({[(1r)-2-
Hydroxy-1-Phenylethyl]amino}methyl)pyrrolidine-3,4-Diol
pdb|2F1A|A Chain A, Golgi Alpha-Mannosidase Ii Complex With
(2r,3r,4s)-2-({[(1s)-2-
Hydroxy-1-Phenylethyl]amino}methyl)pyrrolidine-3,4-Diol
pdb|2F1B|A Chain A, Golgi Alpha-Mannosidase Ii Complex With
(2r,3r,4s,5r)-2-({[(1r)-2-
Hydroxy-1-Phenylethyl]amino}methyl)-5-Methylpyrrolidine-
3,4-Diol
pdb|2F7Q|A Chain A, Golgi Alpha-Mannosidase Ii Complex With
Aminocyclopentitetrol
pdb|2F7R|A Chain A, Golgi Alpha-Mannosidase Ii Complex With
Benzyl-Aminocyclopentitetrol
pdb|2FYV|A Chain A, Golgi Alpha-Mannosidase Ii Complex With An Amino-Salacinol
Carboxylate Analog
pdb|2OW6|A Chain A, Golgi Alpha-Mannosidase Ii Complex With
(1r,5s,6s,7r,8s)-1-
Thioniabicyclo[4.3.0]nonan-5,7,8-Triol Chloride
pdb|2OW7|A Chain A, Golgi Alpha-Mannosidase Ii Complex With (1r,6s,7r,8s)-1-
Thioniabicyclo[4.3.0]nonan-7,8-Diol Chloride
pdb|3BLB|A Chain A, Crystal Structure Of Golgi Mannosidase Ii In Complex With
Swainsonine At 1.3 Angstrom Resolution
pdb|3BUB|A Chain A, Golgi Alpha-mannosidase Ii With An Empty Active Site
pdb|3DDF|A Chain A, Golgi Mannosidase Ii Complex With
(3r,4r,5r)-3,4-Dihydroxy-5-({[(1r)- 2-Hydroxy-1
Phenylethyl]amino}methyl) Pyrrolidin-2-One
pdb|3DDG|A Chain A, Golgi Mannosidase Ii Complex With
(3r,4r,5r)-3,4-Dihydroxy-5-({[(1r)- 2-Hydroxy-1
Phenylethyl]amino}methyl) Methylpyrrolidin-2-One
pdb|3D4Y|A Chain A, Golgi Mannosidase Ii Complex With Mannoimidazole
pdb|3D4Z|A Chain A, Golgi Mannosidase Ii Complex With Gluco-Imidazole
pdb|3D50|A Chain A, Golgi Mannosidase Ii Complex With
N-Octyl-6-Epi-Valienamine
pdb|3D51|A Chain A, Golgi Mannosidase Ii Complex With Gluco-Hydroxyiminolactam
pdb|3D52|A Chain A, Golgi Mannosidase Ii Complex With An N-Aryl Carbamate
Derivative Of Gluco-Hydroxyiminolactam
pdb|3DX0|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With Mannostatin A
At Ph 5.75
pdb|3DX1|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With Mannostatin
Analog (1s,2s, 3r,4r)-4-Aminocyclopentane-1,2,3-Triol
pdb|3DX2|A Chain A, Golgi Mannosidase Ii Complex With Mannostatin B
pdb|3DX4|A Chain A, Golgi Alpha-mannosidase Ii In Complex With Mannostatin
Analog (1r,2r,
3r,4s,5r)-4-amino-5-methoxycyclopentane-1,2,3-triol
pdb|3EJP|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With 5-Substituted
Swainsonine Analog:
(5r)-5-[2'-Oxo-2'-(Phenyl)ethyl]-Swainsonine
pdb|3EJQ|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With 5-Substitued
Swainsonine Analog:
(5r)-5-[2'-Oxo-2'-(4-Methylphenyl)ethyl]-Swainsonine
pdb|3EJR|A Chain A, Golgi Alpha-mannosidase Ii In Complex With 5-substitued
Swainsonine Analog:
(5r)-5-[2'-oxo-2'-(4-tert-butylphenyl)ethyl]-swainsonine
pdb|3EJS|A Chain A, Golgi Alpha-mannosidase Ii In Complex With 5-substituted
Swainsonine Analog:
(5s)-5-[2'-(4-tert-butylphenyl)ethyl]-swainsonine
pdb|3EJT|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With 5-Substituted
Swainsonine
Analog:(5r)-5-[2'-(4-Tert-Butylphenyl)ethyl]-Swainsonine
pdb|3EJU|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With 5-Substituted
Swainsonine
Analog:(5s)-5-[2'-Oxo-2'-(4-Tert-Butylphenyl)ethyl]-
Swainsonine
Length = 1045
Score = 230 bits (586), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 204/746 (27%), Positives = 331/746 (44%), Gaps = 81/746 (10%)
Query: 56 GGWCMHDEATTHYVDMIDQTTLGHHYIKQHFNKTPKAGWQIDPFGHSAVQAYLLGVELGF 115
GGW M DEA +H+ +++ Q T G ++KQ N TP A W IDPFGHS Y+L + GF
Sbjct: 163 GGWVMPDEANSHWRNVLLQLTEGQTWLKQFMNVTPTASWAIDPFGHSPTMPYILQ-KSGF 221
Query: 116 DSVHFARIDYQDRAKRKEDKSLEVIWRGSKTFGSSSQIFTNAFPVH-YSPP--------- 165
++ R Y + + + + LE +WR + +FT+ P + Y P
Sbjct: 222 KNMLIQRTHYSVKKELAQQRQLEFLWRQIWDNKGDTALFTHMMPFYSYDIPHTCGPDPKV 281
Query: 166 -SGFHFELTDDFD---PVQDNP-LLDGYNVEQWVNDFIDAALTQANVTRDNHIMWTMGDD 220
F F+ F P + P + NV + +D +A + R N ++ +GDD
Sbjct: 282 CCQFDFKRMGSFGLSCPWKVPPRTISDQNVAARSDLLVDQWKKKAELYRTNVLLIPLGDD 341
Query: 221 FQYQYAESWFKQ---MDKLIHYVNKGGRVN--ALYSTPSLY----TEAKNAANGPWPLKT 271
F+++ W Q ++L ++N N A + T Y +A+ A +P +
Sbjct: 342 FRFKQNTEWDVQRVNYERLFEHINSQAHFNVQAQFGTLQEYFDAVHQAERAGQAEFPTLS 401
Query: 272 DDYFPYADRRNAYWTGFFTSRPALKGYVRVLSGFYLASRQLEFLAGKKSPGPTTSALGDA 331
D+F YADR + YW+G++TSRP K RVL + A+ L L A
Sbjct: 402 GDFFTYADRSDNYWSGYYTSRPYHKRMDRVLMHYVRAAEMLSAWHSWDGMARIEERLEQA 461
Query: 332 ---LGIAQHHDAVTGTAKQHTTNDYAKRLAIGXXXXXXXXXXXXXXXXXRKSGHQCTKPA 388
L + QHHD +TGTAK H DY +R+ + S P
Sbjct: 462 RRELSLFQHHDGITGTAKTHVVVDYEQRMQEALKACQMVMQQSVYRLLTKPS---IYSPD 518
Query: 389 STFSQCPLLNISY----CPPTEKGIPEGKNLV----VAAYNPLGWNRTDIIRIPVNDANL 440
+FS L + + + I G++++ V +N L R ++ V+ +
Sbjct: 519 FSFSYFTLDDSRWPGSGVEDSRTTIILGEDILPSKHVVMHNTLPHWREQLVDFYVSSPFV 578
Query: 441 IVKDPLGNAINVQYVNLDNVTSNLRKFYTEAYLGQSSKRVPRYWLLFQVTVPPLGWNTYF 500
V D N + Q + V S T+ Q S +Y ++F+ VPP+G TY
Sbjct: 579 SVTDLANNPVEAQ---VSPVWSWHHDTLTKTIHPQGS--TTKYRIIFKARVPPMGLATYV 633
Query: 501 I----------SRAAGKVKRRKGFFLAADS---------PQDKTVEVGPGNLKMSFSRTT 541
+ S A+ + R+ L P++ ++ VG G ++FS
Sbjct: 634 LTISDSKPEHTSYASNLLLRKNPTSLPLGQYPEDVKFGDPREISLRVGNGP-TLAFSE-Q 691
Query: 542 GQLKRMYNSRTGVDVPIQQSFLWYGSMVDTQSSGAYIFRPNG-AQPNVVSRSVPIKIIRG 600
G LK + ++ VP+ FL YG SGAY+F PNG A P + + V + + +G
Sbjct: 692 GLLKSIQLTQDSPHVPVHFKFLKYGVRSHGDRSGAYLFLPNGPASPVELGQPV-VLVTKG 750
Query: 601 PMVDEVHQQFNSWIYQVTRLYIDKEHAEVEYTIGPIPTEDSVGKEVISRMTANMVTEKVF 660
+ V S ++Q I + A + I + D+ E++ R+ ++ + +F
Sbjct: 751 KLESSVSVGLPSVVHQT----IMRGGAPEIRNLVDIGSLDNT--EIVMRLETHIDSGDIF 804
Query: 661 YTDSNGRDFLKRVRDYRADWSLQVNEPVAGNYYPLNLGIFITDKKSEFSVLVDRATGGAS 720
YTD NG F+KR R + P+ NYYP+ G+FI D + ++L + GG+S
Sbjct: 805 YTDLNGLQFIKRRRLDKL--------PLQANYYPIPSGMFIEDANTRLTLLTGQPLGGSS 856
Query: 721 IKDGQVEIMLHRRMLADDGRGVGEAL 746
+ G++EIM RR+ +DD RG+G+ +
Sbjct: 857 LASGELEIMQDRRLASDDERGLGQGV 882
>pdb|1O7D|D Chain D, The Structure Of The Bovine Lysosomal A-Mannosidase
Suggests A Novel Mechanism For Low Ph Activation
Length = 282
Score = 228 bits (582), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 118/262 (45%), Positives = 165/262 (62%), Gaps = 11/262 (4%)
Query: 533 LKMSFSRTTGQLKRMYNSRTGVDVPIQQSFLWY----GSMVDTQSSGAYIFRPNGAQPNV 588
L+ F TG L + N + +P++Q+F WY G+ + +Q+SGAYIFRPN +P
Sbjct: 10 LRARFDPNTGLLMELENLEQNLLLPVRQAFYWYNASTGNNLSSQASGAYIFRPNQNKPLF 69
Query: 589 VSRSVPIKIIRGPMVDEVHQQFNSWIYQVTRLYIDKEHAEVEYTIGPIPTEDSVGKEVIS 648
VS +++ +V EVHQ F++W QV RLY + H E+E+T+GPIP D GKEVIS
Sbjct: 70 VSHWAQTHLVKASLVQEVHQNFSAWCSQVVRLYPRQRHLELEWTVGPIPVGDGWGKEVIS 129
Query: 649 RMTANMVTEKVFYTDSNGRDFLKRVRDYRADWSLQVNEPVAGNYYPLNLGIFITDKKSEF 708
R + T +FYTDSNGR+ L+R R+YR W L EPVAGNYYP+N I+ITD +
Sbjct: 130 RFDTALATRGLFYTDSNGREILERRRNYRPTWKLNQTEPVAGNYYPVNSRIYITDGNMQL 189
Query: 709 SVLVDRATGGASIKDGQVEIMLHRRMLADDGRGVGEALDESVCVRDNCEGLTVRGNYYLS 768
+VL DR+ GG+S++DG +E+M+HRR+L DD RGVGE L++ GL VRG + +
Sbjct: 190 TVLTDRSQGGSSLRDGSLELMVHRRLLKDDARGVGEPLNKE------GSGLWVRGRHLVL 243
Query: 769 VNQL-GAGARWRRTTGQEVYSP 789
+++ A AR R EV +P
Sbjct: 244 LDKKETAAARHRLQAEMEVLAP 265
>pdb|1QWU|A Chain A, Golgi Alpha-Mannosidase Ii D341n Mutant Complex With
5-F-Guloside
pdb|1QX1|A Chain A, Golgi Alpha-Mannosidase Ii D341n Mutant Complex With
2-F-Mannosyl-F
pdb|3BUP|A Chain A, Golgi Alpha-Mannosidase Ii D341n Acid-Base Catalyst Mutant
With Bound Mannose
Length = 1045
Score = 228 bits (582), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 203/746 (27%), Positives = 331/746 (44%), Gaps = 81/746 (10%)
Query: 56 GGWCMHDEATTHYVDMIDQTTLGHHYIKQHFNKTPKAGWQIDPFGHSAVQAYLLGVELGF 115
GGW M DEA +H+ +++ Q T G ++KQ N TP A W IDPFGHS Y+L + GF
Sbjct: 163 GGWVMPDEANSHWRNVLLQLTEGQTWLKQFMNVTPTASWAIDPFGHSPTMPYILQ-KSGF 221
Query: 116 DSVHFARIDYQDRAKRKEDKSLEVIWRGSKTFGSSSQIFTNAFPVH-YSPP--------- 165
++ R Y + + + + LE +WR + +FT+ P + Y P
Sbjct: 222 KNMLIQRTHYSVKKELAQQRQLEFLWRQIWDNKGDTALFTHMMPFYSYDIPHTCGPDPKV 281
Query: 166 -SGFHFELTDDFD---PVQDNP-LLDGYNVEQWVNDFIDAALTQANVTRDNHIMWTMGDD 220
F F+ F P + P + NV + +D +A + R N ++ +GD+
Sbjct: 282 CCQFDFKRMGSFGLSCPWKVPPRTISDQNVAARSDLLVDQWKKKAELYRTNVLLIPLGDN 341
Query: 221 FQYQYAESWFKQ---MDKLIHYVNKGGRVN--ALYSTPSLY----TEAKNAANGPWPLKT 271
F+++ W Q ++L ++N N A + T Y +A+ A +P +
Sbjct: 342 FRFKQNTEWDVQRVNYERLFEHINSQAHFNVQAQFGTLQEYFDAVHQAERAGQAEFPTLS 401
Query: 272 DDYFPYADRRNAYWTGFFTSRPALKGYVRVLSGFYLASRQLEFLAGKKSPGPTTSALGDA 331
D+F YADR + YW+G++TSRP K RVL + A+ L L A
Sbjct: 402 GDFFTYADRSDNYWSGYYTSRPYHKRMDRVLMHYVRAAEMLSAWHSWDGMARIEERLEQA 461
Query: 332 ---LGIAQHHDAVTGTAKQHTTNDYAKRLAIGXXXXXXXXXXXXXXXXXRKSGHQCTKPA 388
L + QHHD +TGTAK H DY +R+ + S P
Sbjct: 462 RRELSLFQHHDGITGTAKTHVVVDYEQRMQEALKACQMVMQQSVYRLLTKPS---IYSPD 518
Query: 389 STFSQCPLLNISY----CPPTEKGIPEGKNLV----VAAYNPLGWNRTDIIRIPVNDANL 440
+FS L + + + I G++++ V +N L R ++ V+ +
Sbjct: 519 FSFSYFTLDDSRWPGSGVEDSRTTIILGEDILPSKHVVMHNTLPHWREQLVDFYVSSPFV 578
Query: 441 IVKDPLGNAINVQYVNLDNVTSNLRKFYTEAYLGQSSKRVPRYWLLFQVTVPPLGWNTYF 500
V D N + Q + V S T+ Q S +Y ++F+ VPP+G TY
Sbjct: 579 SVTDLANNPVEAQ---VSPVWSWHHDTLTKTIHPQGS--TTKYRIIFKARVPPMGLATYV 633
Query: 501 I----------SRAAGKVKRRKGFFLAADS---------PQDKTVEVGPGNLKMSFSRTT 541
+ S A+ + R+ L P++ ++ VG G ++FS
Sbjct: 634 LTISDSKPEHTSYASNLLLRKNPTSLPLGQYPEDVKFGDPREISLRVGNGP-TLAFSE-Q 691
Query: 542 GQLKRMYNSRTGVDVPIQQSFLWYGSMVDTQSSGAYIFRPNG-AQPNVVSRSVPIKIIRG 600
G LK + ++ VP+ FL YG SGAY+F PNG A P + + V + + +G
Sbjct: 692 GLLKSIQLTQDSPHVPVHFKFLKYGVRSHGDRSGAYLFLPNGPASPVELGQPV-VLVTKG 750
Query: 601 PMVDEVHQQFNSWIYQVTRLYIDKEHAEVEYTIGPIPTEDSVGKEVISRMTANMVTEKVF 660
+ V S ++Q I + A + I + D+ E++ R+ ++ + +F
Sbjct: 751 KLESSVSVGLPSVVHQT----IMRGGAPEIRNLVDIGSLDNT--EIVMRLETHIDSGDIF 804
Query: 661 YTDSNGRDFLKRVRDYRADWSLQVNEPVAGNYYPLNLGIFITDKKSEFSVLVDRATGGAS 720
YTD NG F+KR R + P+ NYYP+ G+FI D + ++L + GG+S
Sbjct: 805 YTDLNGLQFIKRRRLDKL--------PLQANYYPIPSGMFIEDANTRLTLLTGQPLGGSS 856
Query: 721 IKDGQVEIMLHRRMLADDGRGVGEAL 746
+ G++EIM RR+ +DD RG+G+ +
Sbjct: 857 LASGELEIMQDRRLASDDERGLGQGV 882
>pdb|3CV5|A Chain A, Golgi Mannosidase Ii D204a Catalytic Nucleophile Mutant
Complex With 3alpha,6alpha-Mannopentaose
pdb|3CZN|A Chain A, Golgi Alpha-Mannosidase Ii (D204a Nucleophile Mutant) In
Complex With Gnman5gn
pdb|3CZS|A Chain A, Golgi Alpha-Mannosidase Ii (D204a Nucleophile Mutant)
pdb|3BUD|A Chain A, Golgi Mannosidase Ii D204a Catalytic Nucleophile Mutant
With An Empty Active Site
pdb|3BUI|A Chain A, Golgi Mannosidase Ii D204a Catalytic Nucleophile Mutant
Complex With Tris
pdb|3BUQ|A Chain A, Golgi Alpha-Mannosidase Ii D204a Catalytic Nucleophile
Mutant With Bound Mannose.
pdb|3BVT|A Chain A, Golgi Mannosidase Ii D204a Catalytic Nucleophile Mutant
Complex With Methyl
(Alpha-D-Mannopyranosyl)-(1->3)-S-Alpha-D-
Mannopyranoside
pdb|3BVU|A Chain A, Golgi Mannosidase Ii D204a Catalytic Nucleophile Mutant
Complex With
Methyl(Alpha-D-Mannopyranosyl)-(1->3)-S-[(Alpha-D-
Mannopyranosyl)-(1- >6)]-Alpha-D-Mannopyranoside
pdb|3BVV|A Chain A, Golgi Mannosidase Ii D204a Catalytic Nucleophile Mutant
Complex With Methyl
Alpha-D-Mannopyranosyl-(1->3)-[6-Thio-
Alpha-D-Mannopyranosyl-(1->6)]-Beta-D-Mannopyranoside
pdb|3BVW|A Chain A, Golgi Mannosidase Ii D204a Catalytic Nucleophile Mutant
Complex With Methyl (2-Deoxy-2-Acetamido-Beta-D-
Glucopyranosyl)-(1->2)-Alpha-D-Mannopyranosyl- (1->3)-
[alpha-D-Mannopyranosyl-(1->6)-6-Thio-Alpha-D-
Mannopyranosyl- (1->6)]-Beta-D-Mannopyranoside
pdb|3BVX|A Chain A, Golgi Mannosidase Ii D204a Catalytic Nucleophile Mutant
Complex With Methyl (2-Deoxy-2-Acetamido-Beta-D-
Glucopyranosyl)-(1->2)-(Alpha-D-Mannopyranosyl)- (1->3)-
[(Alpha-D-Mannopyranosyl)-(1->6)-(Alpha-D-
Mannopyranosyl)- (1->6)]-Beta-D-Mannopyranoside
Length = 1045
Score = 227 bits (579), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 203/746 (27%), Positives = 330/746 (44%), Gaps = 81/746 (10%)
Query: 56 GGWCMHDEATTHYVDMIDQTTLGHHYIKQHFNKTPKAGWQIDPFGHSAVQAYLLGVELGF 115
GGW M DEA +H+ +++ Q T G ++KQ N TP A W I PFGHS Y+L + GF
Sbjct: 163 GGWVMPDEANSHWRNVLLQLTEGQTWLKQFMNVTPTASWAIAPFGHSPTMPYILQ-KSGF 221
Query: 116 DSVHFARIDYQDRAKRKEDKSLEVIWRGSKTFGSSSQIFTNAFPVH-YSPP--------- 165
++ R Y + + + + LE +WR + +FT+ P + Y P
Sbjct: 222 KNMLIQRTHYSVKKELAQQRQLEFLWRQIWDNKGDTALFTHMMPFYSYDIPHTCGPDPKV 281
Query: 166 -SGFHFELTDDFD---PVQDNP-LLDGYNVEQWVNDFIDAALTQANVTRDNHIMWTMGDD 220
F F+ F P + P + NV + +D +A + R N ++ +GDD
Sbjct: 282 CCQFDFKRMGSFGLSCPWKVPPRTISDQNVAARSDLLVDQWKKKAELYRTNVLLIPLGDD 341
Query: 221 FQYQYAESWFKQ---MDKLIHYVNKGGRVN--ALYSTPSLY----TEAKNAANGPWPLKT 271
F+++ W Q ++L ++N N A + T Y +A+ A +P +
Sbjct: 342 FRFKQNTEWDVQRVNYERLFEHINSQAHFNVQAQFGTLQEYFDAVHQAERAGQAEFPTLS 401
Query: 272 DDYFPYADRRNAYWTGFFTSRPALKGYVRVLSGFYLASRQLEFLAGKKSPGPTTSALGDA 331
D+F YADR + YW+G++TSRP K RVL + A+ L L A
Sbjct: 402 GDFFTYADRSDNYWSGYYTSRPYHKRMDRVLMHYVRAAEMLSAWHSWDGMARIEERLEQA 461
Query: 332 ---LGIAQHHDAVTGTAKQHTTNDYAKRLAIGXXXXXXXXXXXXXXXXXRKSGHQCTKPA 388
L + QHHD +TGTAK H DY +R+ + S P
Sbjct: 462 RRELSLFQHHDGITGTAKTHVVVDYEQRMQEALKACQMVMQQSVYRLLTKPS---IYSPD 518
Query: 389 STFSQCPLLNISY----CPPTEKGIPEGKNLV----VAAYNPLGWNRTDIIRIPVNDANL 440
+FS L + + + I G++++ V +N L R ++ V+ +
Sbjct: 519 FSFSYFTLDDSRWPGSGVEDSRTTIILGEDILPSKHVVMHNTLPHWREQLVDFYVSSPFV 578
Query: 441 IVKDPLGNAINVQYVNLDNVTSNLRKFYTEAYLGQSSKRVPRYWLLFQVTVPPLGWNTYF 500
V D N + Q + V S T+ Q S +Y ++F+ VPP+G TY
Sbjct: 579 SVTDLANNPVEAQ---VSPVWSWHHDTLTKTIHPQGS--TTKYRIIFKARVPPMGLATYV 633
Query: 501 I----------SRAAGKVKRRKGFFLAADS---------PQDKTVEVGPGNLKMSFSRTT 541
+ S A+ + R+ L P++ ++ VG G ++FS
Sbjct: 634 LTISDSKPEHTSYASNLLLRKNPTSLPLGQYPEDVKFGDPREISLRVGNGP-TLAFSE-Q 691
Query: 542 GQLKRMYNSRTGVDVPIQQSFLWYGSMVDTQSSGAYIFRPNG-AQPNVVSRSVPIKIIRG 600
G LK + ++ VP+ FL YG SGAY+F PNG A P + + V + + +G
Sbjct: 692 GLLKSIQLTQDSPHVPVHFKFLKYGVRSHGDRSGAYLFLPNGPASPVELGQPV-VLVTKG 750
Query: 601 PMVDEVHQQFNSWIYQVTRLYIDKEHAEVEYTIGPIPTEDSVGKEVISRMTANMVTEKVF 660
+ V S ++Q I + A + I + D+ E++ R+ ++ + +F
Sbjct: 751 KLESSVSVGLPSVVHQT----IMRGGAPEIRNLVDIGSLDNT--EIVMRLETHIDSGDIF 804
Query: 661 YTDSNGRDFLKRVRDYRADWSLQVNEPVAGNYYPLNLGIFITDKKSEFSVLVDRATGGAS 720
YTD NG F+KR R + P+ NYYP+ G+FI D + ++L + GG+S
Sbjct: 805 YTDLNGLQFIKRRRLDKL--------PLQANYYPIPSGMFIEDANTRLTLLTGQPLGGSS 856
Query: 721 IKDGQVEIMLHRRMLADDGRGVGEAL 746
+ G++EIM RR+ +DD RG+G+ +
Sbjct: 857 LASGELEIMQDRRLASDDERGLGQGV 882
>pdb|1HTY|A Chain A, Golgi Alpha-Mannosidase Ii
Length = 1015
Score = 221 bits (562), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 204/746 (27%), Positives = 328/746 (43%), Gaps = 81/746 (10%)
Query: 56 GGWCMHDEATTHYVDMIDQTTLGHHYIKQHFNKTPKAGWQIDPFGHSAVQAYLLGVELGF 115
GGW DEA +H+ +++ Q T G ++KQ N TP A W IDPFGHS Y+L + GF
Sbjct: 133 GGWVXPDEANSHWRNVLLQLTEGQTWLKQFXNVTPTASWAIDPFGHSPTXPYILQ-KSGF 191
Query: 116 DSVHFARIDYQDRAKRKEDKSLEVIWRGSKTFGSSSQIFTNAFPVH-YSPP--------- 165
++ R Y + + + + LE +WR + +FT+ P + Y P
Sbjct: 192 KNMLIQRTHYSVKKELAQQRQLEFLWRQIWDNKGDTALFTHXXPFYSYDIPHTCGPDPKV 251
Query: 166 -SGFHFELTDDFD---PVQDNP-LLDGYNVEQWVNDFIDAALTQANVTRDNHIMWTMGDD 220
F F+ F P + P + NV + +D +A + R N ++ +GDD
Sbjct: 252 CCQFDFKRXGSFGLSCPWKVPPRTISDQNVAARSDLLVDQWKKKAELYRTNVLLIPLGDD 311
Query: 221 FQYQYAESWFKQ---MDKLIHYVNKGGRVN--ALYSTPSLY----TEAKNAANGPWPLKT 271
F+++ W Q ++L ++N N A + T Y +A+ A +P +
Sbjct: 312 FRFKQNTEWDVQRVNYERLFEHINSQAHFNVQAQFGTLQEYFDAVHQAERAGQAEFPTLS 371
Query: 272 DDYFPYADRRNAYWTGFFTSRPALKGYVRVLSGFYLASRQLEFLAGKKSPGPTTSALGDA 331
D+F YADR + YW+G++TSRP K RVL + A+ L L A
Sbjct: 372 GDFFTYADRSDNYWSGYYTSRPYHKRXDRVLXHYVRAAEXLSAWHSWDGMARIEERLEQA 431
Query: 332 ---LGIAQHHDAVTGTAKQHTTNDYAKRLAIGXXXXXXXXXXXXXXXXXRKSGHQCTKPA 388
L + QHHD +TGTAK H DY +R + S P
Sbjct: 432 RRELSLFQHHDGITGTAKTHVVVDYEQRXQEALKACQXVXQQSVYRLLTKPS---IYSPD 488
Query: 389 STFSQCPLLNISY----CPPTEKGIPEGKNLV----VAAYNPLGWNRTDIIRIPVNDANL 440
+FS L + + + I G++++ V +N L R ++ V+ +
Sbjct: 489 FSFSYFTLDDSRWPGSGVEDSRTTIILGEDILPSKHVVXHNTLPHWREQLVDFYVSSPFV 548
Query: 441 IVKDPLGNAINVQYVNLDNVTSNLRKFYTEAYLGQSSKRVPRYWLLFQVTVPPLGWNTYF 500
V D N + Q + V S T+ Q S +Y ++F+ VPP G TY
Sbjct: 549 SVTDLANNPVEAQ---VSPVWSWHHDTLTKTIHPQGS--TTKYRIIFKARVPPXGLATYV 603
Query: 501 I----------SRAAGKVKRRKGFFLAADS---------PQDKTVEVGPGNLKMSFSRTT 541
+ S A+ + R+ L P++ ++ VG G ++FS
Sbjct: 604 LTISDSKPEHTSYASNLLLRKNPTSLPLGQYPEDVKFGDPREISLRVGNGP-TLAFSE-Q 661
Query: 542 GQLKRMYNSRTGVDVPIQQSFLWYGSMVDTQSSGAYIFRPNG-AQPNVVSRSVPIKIIRG 600
G LK + ++ VP+ FL YG SGAY+F PNG A P + + V + + +G
Sbjct: 662 GLLKSIQLTQDSPHVPVHFKFLKYGVRSHGDRSGAYLFLPNGPASPVELGQPV-VLVTKG 720
Query: 601 PMVDEVHQQFNSWIYQVTRLYIDKEHAEVEYTIGPIPTEDSVGKEVISRMTANMVTEKVF 660
+ V S ++Q I + A + I + D+ E++ R+ ++ + +F
Sbjct: 721 KLESSVSVGLPSVVHQT----IXRGGAPEIRNLVDIGSLDNT--EIVXRLETHIDSGDIF 774
Query: 661 YTDSNGRDFLKRVRDYRADWSLQVNEPVAGNYYPLNLGIFITDKKSEFSVLVDRATGGAS 720
YTD NG F+KR R + P+ NYYP+ G FI D + ++L + GG+S
Sbjct: 775 YTDLNGLQFIKRRRLDKL--------PLQANYYPIPSGXFIEDANTRLTLLTGQPLGGSS 826
Query: 721 IKDGQVEIMLHRRMLADDGRGVGEAL 746
+ G++EI RR+ +DD RG+G+ +
Sbjct: 827 LASGELEIXQDRRLASDDERGLGQGV 852
>pdb|1O7D|A Chain A, The Structure Of The Bovine Lysosomal A-Mannosidase
Suggests A Novel Mechanism For Low Ph Activation
Length = 298
Score = 163 bits (413), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 82/197 (41%), Positives = 116/197 (58%), Gaps = 4/197 (2%)
Query: 55 NGGWCMHDEATTHYVDMIDQTTLGHHYIKQHF--NKTPKAGWQIDPFGHSAVQAYLLGVE 112
NGGW M+DEATTHY +IDQ TLG ++++ F + P+ W IDPFGHS QA L +
Sbjct: 103 NGGWVMNDEATTHYGAIIDQMTLGLRFLEETFGSDGRPRVAWHIDPFGHSREQASLFA-Q 161
Query: 113 LGFDSVHFARIDYQDRAKRKEDKSLEVIWRGSKTFGS-SSQIFTNAFPVHYSPPSGFHFE 171
+GFD F R+DYQD+ RK+ +E +WR S + ++ +FT+ P Y+PP G ++
Sbjct: 162 MGFDGFFFGRLDYQDKKVRKKTLQMEQVWRASTSLKPPTADLFTSVLPNMYNPPEGLCWD 221
Query: 172 LTDDFDPVQDNPLLDGYNVEQWVNDFIDAALTQANVTRDNHIMWTMGDDFQYQYAESWFK 231
+ PV ++ YN ++ V F+ A Q + R H + TMG DFQY+ A +WFK
Sbjct: 222 MLCADKPVVEDTRSPEYNAKELVRYFLKLATDQGKLYRTKHTVMTMGSDFQYENANTWFK 281
Query: 232 QMDKLIHYVNKGGRVNA 248
+DKLI VN R N
Sbjct: 282 NLDKLIQLVNAQQRANG 298
>pdb|1O7D|B Chain B, The Structure Of The Bovine Lysosomal A-Mannosidase
Suggests A Novel Mechanism For Low Ph Activation
Length = 84
Score = 79.3 bits (194), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 40/76 (52%), Positives = 48/76 (63%)
Query: 245 RVNALYSTPSLYTEAKNAANGPWPLKTDDYFPYADRRNAYWTGFFTSRPALKGYVRVLSG 304
RVN LYSTP+ Y N AN W +K DD+FPYAD +WTG+F+SRPALK Y R+
Sbjct: 2 RVNVLYSTPACYLWELNKANLSWSVKKDDFFPYADGPYMFWTGYFSSRPALKRYERLSYN 61
Query: 305 FYLASRQLEFLAGKKS 320
F QLE LAG +
Sbjct: 62 FLQVCNQLEALAGPAA 77
>pdb|1O7D|C Chain C, The Structure Of The Bovine Lysosomal A-Mannosidase
Suggests A Novel Mechanism For Low Ph Activation
Length = 159
Score = 76.3 bits (186), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 79/179 (44%), Gaps = 33/179 (18%)
Query: 325 TSALGDALGIAQHHDAVTGTAKQHTTNDYAKRLAIGXXXXXXXXXXXXXXXXXRKSGHQC 384
++ L +A+ + QHHDAV+GT++QH NDYA++L+ G K
Sbjct: 3 SAPLNEAMAVLQHHDAVSGTSRQHVANDYARQLSEGWRPCEVLMSNALAHLSGLKED--- 59
Query: 385 TKPASTFSQCPLLNISYCPPTEKGIPEGKNLVVAAYNPLGWNRTDIIRIPVNDANLIVKD 444
F+ C LNIS CP T+ + V YNPLG ++R+PV+ +VKD
Sbjct: 60 ------FAFCRKLNISICPLTQT----AERFQVIVYNPLGRKVDWMVRLPVSKHVYLVKD 109
Query: 445 PLGNAINVQYVNLDNVTSNLRKFYTEAYLGQSSKRVPRYWLLFQVTVPPLGWNTYFISR 503
P G + V + + S LLF VP +G++ Y +S+
Sbjct: 110 PGGKIVPSDVVTIPSSDSQ--------------------ELLFSALVPAVGFSIYSVSQ 148
>pdb|1O7D|E Chain E, The Structure Of The Bovine Lysosomal A-Mannosidase
Suggests A Novel Mechanism For Low Ph Activation
Length = 126
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 60/111 (54%), Gaps = 7/111 (6%)
Query: 819 LPLNVALITLEELDDGSVLLRLAHLYEEGEDA--EYSTLAKVELKKMFKGKSIKQLKEMS 876
LP +V L+TL ++LLRL H + GED+ S+ ++L +F +I L+E +
Sbjct: 12 LPPSVRLLTLARWGPETLLLRLEHQFAVGEDSGRNLSSPVTLDLTNLFSAFTITNLRETT 71
Query: 877 LSANQEKLEMKKMTWKVEGESGKTHSPVRGGPLDASTLVVELGPMEIRTFL 927
L+ANQ ++ W ++G T P P+ A+ + L PMEIRTFL
Sbjct: 72 LAANQLLAYASRLQWTT--DTGPTPHPSPSRPVSAT---ITLQPMEIRTFL 117
>pdb|3IMM|A Chain A, Crystal Structure Of Putative Glycosyl Hydrolase
(Yp_001301887.1) From Parabacteroides Distasonis Atcc
8503 At 2.00 A Resolution
pdb|3IMM|B Chain B, Crystal Structure Of Putative Glycosyl Hydrolase
(Yp_001301887.1) From Parabacteroides Distasonis Atcc
8503 At 2.00 A Resolution
pdb|3IMM|C Chain C, Crystal Structure Of Putative Glycosyl Hydrolase
(Yp_001301887.1) From Parabacteroides Distasonis Atcc
8503 At 2.00 A Resolution
Length = 201
Score = 30.0 bits (66), Expect = 5.9, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 20/37 (54%)
Query: 412 GKNLVVAAYNPLGWNRTDIIRIPVNDANLIVKDPLGN 448
GKNL A YNP W+ TD + V D ++ KD N
Sbjct: 12 GKNLENANYNPEVWSETDGVLGAVKDESIWTKDEYEN 48
>pdb|3V9H|A Chain A, Crystal Structure Of Human 1-Pyrroline-5-Carboxylate
Dehydrogenase Mutant S352a
pdb|3V9H|B Chain B, Crystal Structure Of Human 1-Pyrroline-5-Carboxylate
Dehydrogenase Mutant S352a
pdb|3V9H|C Chain C, Crystal Structure Of Human 1-Pyrroline-5-Carboxylate
Dehydrogenase Mutant S352a
pdb|3V9H|D Chain D, Crystal Structure Of Human 1-Pyrroline-5-Carboxylate
Dehydrogenase Mutant S352a
Length = 566
Score = 30.0 bits (66), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 6/43 (13%)
Query: 758 GLTVRGNYYLSVNQLGAGARWRRTTGQEVYSPLLLAFTQEKLE 800
GL RG++ GAG RW+ T+ +V + +LAFTQ E
Sbjct: 13 GLVPRGSH------TGAGLRWKHTSSLKVANEPVLAFTQGSPE 49
>pdb|3V9G|A Chain A, Crystal Structure Of Human 1-Pyrroline-5-Carboxylate
Dehydrogenase
pdb|3V9G|B Chain B, Crystal Structure Of Human 1-Pyrroline-5-Carboxylate
Dehydrogenase
pdb|3V9G|C Chain C, Crystal Structure Of Human 1-Pyrroline-5-Carboxylate
Dehydrogenase
pdb|3V9G|D Chain D, Crystal Structure Of Human 1-Pyrroline-5-Carboxylate
Dehydrogenase
Length = 566
Score = 30.0 bits (66), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 6/43 (13%)
Query: 758 GLTVRGNYYLSVNQLGAGARWRRTTGQEVYSPLLLAFTQEKLE 800
GL RG++ GAG RW+ T+ +V + +LAFTQ E
Sbjct: 13 GLVPRGSH------TGAGLRWKHTSSLKVANEPVLAFTQGSPE 49
>pdb|3V9I|A Chain A, Crystal Structure Of Human 1-Pyrroline-5-Carboxylate
Dehydrogenase Mutant S352l
pdb|3V9I|B Chain B, Crystal Structure Of Human 1-Pyrroline-5-Carboxylate
Dehydrogenase Mutant S352l
pdb|3V9I|C Chain C, Crystal Structure Of Human 1-Pyrroline-5-Carboxylate
Dehydrogenase Mutant S352l
pdb|3V9I|D Chain D, Crystal Structure Of Human 1-Pyrroline-5-Carboxylate
Dehydrogenase Mutant S352l
Length = 566
Score = 30.0 bits (66), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 6/43 (13%)
Query: 758 GLTVRGNYYLSVNQLGAGARWRRTTGQEVYSPLLLAFTQEKLE 800
GL RG++ GAG RW+ T+ +V + +LAFTQ E
Sbjct: 13 GLVPRGSH------TGAGLRWKHTSSLKVANEPVLAFTQGSPE 49
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,395,917
Number of Sequences: 62578
Number of extensions: 1295138
Number of successful extensions: 3009
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 2934
Number of HSP's gapped (non-prelim): 28
length of query: 930
length of database: 14,973,337
effective HSP length: 108
effective length of query: 822
effective length of database: 8,214,913
effective search space: 6752658486
effective search space used: 6752658486
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)