Citrus Sinensis ID: 002368

Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930
MNLWWLVSIFSFCIGTAIQGALKPEVLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFIDSKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARALKLFLDQGNTISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVIEHGYPQQIGYWSNYSGLSVVPPEKLYRKPANRSSSNQHLYSVVWPGGVTSKPRGWVFPNNGRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGDIAIVTNRTKAVDFTQPYIESGLVVVAPVRKLNSSAWAFLRPFTPLMWAVTGVFFLVVGTVVWILEHRLNDEFRGPPRKQIVTVLWFSFSTMFFAHRENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIDTLMTSNDRVGYQVGSFAENYLIEELSIPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSDHCQFSVRGQEFTKSGWGFAFPRDSPLAIDMSTAILTLSENGELQRIHDKWLRKKACSSESSQSDSEQLQIQSFRGLFLICGIACFLALLAYFCLMLRQFKKYSAEESASSVPSSSRSARLQTFLSFADEKVDRTKSKLKRKREDMPSNVYMIEAEPKNGSARINRDISQEREQYNNETWLH
ccHHHHHHHHHHHHHHHccccccccEEEEEEEECcccccHHHHHHHHHHHHHHHccccccccccEEEEEEEcccccHHHHHHHHHHHHHcccEEEEccccHHHHHHHHHHHHHccccEEEECccccccccccccEEEEEcccHHHHHHHHHHHHHHccccEEEEEEEcccccccHHHHHHHHHHHcccEEEEEEEcccccccccHHHHHHHHHHHccccEEEEEEcccHHHHHHHHHHHHHcccccccEEEEccccHHcccccccccHHHHHcccccEEEEECccccHHHHHHHHHHHcccccccccccccccHHcHHHHHHHHHHHHHHccccEEEccccccccccccccccccccccccHHHHHHHHHccccccccccEEEccccccccccEEEEEEEccccEEEEEEECccccccccccccccccccccccccccEEEEEEccccccccccEEEcccccEEEEccccccccccccccccccccEEEEEHHHHHHHHHHccccEEEEEEEcccccccccHHHHHHHHHcccccEEEEcEEEEccCEEEEEcccccccccEEEEEEcccccccccEEcccccHHHHHHHHHHHHHHHHHEEEEEccccccccccccccccEEHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHcccccccccHHHHHHccccCEEECcccHHHHHHHHcccccHHccccccHHHHHHHHHccccEEEEECcHHHHHHHHccccEEEEcccccccCEEEEccccccccHHHHHHHHcccccccHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccHHHHccccccccc
MNLWWLVSIFSFCIGTAIQGALKPEVLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFIDSKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARALKLFLDQGNTISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVIEHGYPQQIGYWSNYSGLSVVPPE*L************HLYSVVWPGGVTSKPRGWVFPNNGRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGDIAIVTNRTKAVDFTQPYIESGLVVVAPVRKLNSSAWAFLRPFTPLMWAVTGVFFLVVGTVVWILEHRLNDEFRGPPRKQIVTVLWFSFSTMFFAHRENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIDTLMTSNDRVGYQVGSFAENYLIEELSIPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSDHCQFSVRGQEFTKSGWGFAFPRDSPLAIDMSTAILTLSENGELQRIHDKW******************QIQSFRGLFLICGIACFLALLAYFCLMLRQFKKY*******************TF**********************************************************
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MNLWWLVSIFSFCIGTAIQGALKPEVLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFIDSKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARALKLFLDQGNTISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVIEHGYPQQIGYWSNYSGLSVVPPEKLYRKPANRSSSNQHLYSVVWPGGVTSKPRGWVFPNNGRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGDIAIVTNRTKAVDFTQPYIESGLVVVAPVRKLNSSAWAFLRPFTPLMWAVTGVFFLVVGTVVWILEHRLNDEFRGPPRKQIVTVLWFSFSTMFFAHRENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIDTLMTSNDRVGYQVGSFAENYLIEELSIPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSDHCQFSVRGQEFTKSGWGFAFPRDSPLAIDMSTAILTLSENGELQRIHDKWLRKKACSSESSQSDSEQLQIQSFRGLFLICGIACFLALLAYFCLMLRQFKKYSAEESASSVPSSSRSARLQTFxxxxxxxxxxxxxxxxxxxxxMPSNVYMIEAEPKNGSARINRDISQEREQYNNETWLH

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
Glutamate receptor 3.1 Glutamate-gated receptor that probably acts as non-selective cation channel. Involved in root development. May regulate cell proliferation and cell death in the root apex.probableQ7XP59
Glutamate receptor 3.2 Glutamate-gated receptor that probably acts as non-selective cation channel. May be involved in light-signal transduction and calcium homeostasis via the regulation of calcium influx into cells. Could play a role in calcium unloading from xylem.probableQ93YT1

Prediction of Enzyme Commission Number ?

No EC number assigned to the protein, probably not an enzyme!

Spatial Structural Prediction

Structural Models Based on Templates

Template: 2E4U, chain A
Confidence level:very confident
Coverage over the Query: 22-335,349-418,437-456
View the alignment between query and template
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Template: 2PYY, chain A
Confidence level:very confident
Coverage over the Query: 463-568,677-801
View the alignment between query and template
View the model in PyMOL
Template: 1PB7, chain A
Confidence level:very confident
Coverage over the Query: 462-469,480-570,678-807
View the alignment between query and template
View the model in PyMOL
Template: 1YAE, chain A
Confidence level:very confident
Coverage over the Query: 460-568,679-805
View the alignment between query and template
View the model in PyMOL
Template: 4GPA, chain A
Confidence level:confident
Coverage over the Query: 23-422
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View the model in PyMOL
Template: 1LNQ, chain A
Confidence level:probable
Coverage over the Query: 619-670,690-747
View the alignment between query and template
View the model in PyMOL
Template: 2K1E, chain A
Confidence level:probable
Coverage over the Query: 593-675
View the alignment between query and template
View the model in PyMOL

Templates for Structure Prediction

ID ?Alignment Graph ?Confidence Level ? View Alignment and Template ?
Query
3kg2, chain Avery confident Alignment | Template Structure