Query 002369
Match_columns 930
No_of_seqs 208 out of 733
Neff 4.2
Searched_HMMs 46136
Date Thu Mar 28 22:29:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002369.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002369hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2043 Signaling protein SWIF 100.0 2.9E-33 6.4E-38 334.4 26.4 260 653-929 605-872 (896)
2 KOG4362 Transcriptional regula 99.5 1.2E-13 2.7E-18 161.5 12.3 187 721-913 478-680 (684)
3 KOG3548 DNA damage checkpoint 99.4 1.8E-12 3.8E-17 153.5 11.5 198 718-922 925-1173(1176)
4 KOG3524 Predicted guanine nucl 99.2 1.4E-11 3.1E-16 142.9 3.9 185 710-924 110-296 (850)
5 PF00533 BRCT: BRCA1 C Terminu 99.2 1.7E-10 3.7E-15 98.6 9.3 72 718-790 5-78 (78)
6 cd00027 BRCT Breast Cancer Sup 99.1 5.1E-10 1.1E-14 91.5 8.1 71 721-791 1-72 (72)
7 PF12738 PTCB-BRCT: twin BRCT 99.0 3E-10 6.4E-15 96.0 4.4 62 722-785 1-63 (63)
8 smart00292 BRCT breast cancer 99.0 3E-09 6.4E-14 88.9 8.4 74 719-793 3-80 (80)
9 KOG1929 Nucleotide excision re 98.9 1.2E-08 2.6E-13 123.0 13.0 184 714-922 5-190 (811)
10 KOG3226 DNA repair protein [Re 98.4 2.1E-07 4.5E-12 103.1 5.8 86 719-806 318-404 (508)
11 PF00533 BRCT: BRCA1 C Terminu 98.4 1.4E-06 3.1E-11 74.5 8.3 74 826-908 3-78 (78)
12 smart00292 BRCT breast cancer 98.1 1.2E-05 2.5E-10 67.2 8.3 76 827-910 1-79 (80)
13 PLN03122 Poly [ADP-ribose] pol 98.0 1.1E-05 2.4E-10 98.5 8.6 87 717-804 188-278 (815)
14 cd00027 BRCT Breast Cancer Sup 98.0 4.6E-05 9.9E-10 62.2 8.4 69 831-908 1-71 (72)
15 PLN03123 poly [ADP-ribose] pol 97.8 4.2E-05 9.2E-10 95.2 8.6 90 714-804 389-481 (981)
16 KOG1929 Nucleotide excision re 97.7 0.00027 5.9E-09 86.3 12.1 151 708-859 93-270 (811)
17 KOG0966 ATP-dependent DNA liga 96.5 0.042 9E-07 67.1 14.5 83 718-801 633-719 (881)
18 KOG0966 ATP-dependent DNA liga 96.4 0.0072 1.6E-07 73.4 8.0 90 826-922 631-723 (881)
19 PF12738 PTCB-BRCT: twin BRCT 96.2 0.0076 1.6E-07 51.1 4.8 62 833-903 2-63 (63)
20 PRK06195 DNA polymerase III su 96.1 0.015 3.2E-07 64.4 7.9 74 718-791 220-307 (309)
21 KOG0323 TFIIF-interacting CTD 96.0 0.0023 5E-08 76.8 1.0 95 711-806 434-533 (635)
22 PRK06063 DNA polymerase III su 96.0 0.019 4.2E-07 63.8 7.9 72 719-791 233-306 (313)
23 PRK07956 ligA NAD-dependent DN 95.9 0.021 4.5E-07 69.5 8.6 73 719-792 591-664 (665)
24 PRK14351 ligA NAD-dependent DN 95.9 0.024 5.2E-07 69.3 8.7 75 718-792 609-684 (689)
25 PLN03122 Poly [ADP-ribose] pol 95.9 0.025 5.3E-07 70.1 8.8 88 825-922 186-279 (815)
26 PRK14350 ligA NAD-dependent DN 95.5 0.031 6.7E-07 68.1 7.6 71 719-790 594-665 (669)
27 TIGR00575 dnlj DNA ligase, NAD 95.2 0.032 6.9E-07 67.9 6.8 67 718-785 584-651 (652)
28 COG0272 Lig NAD-dependent DNA 95.2 0.066 1.4E-06 64.8 8.9 73 717-790 593-666 (667)
29 KOG3226 DNA repair protein [Re 94.4 0.056 1.2E-06 61.3 5.5 89 826-923 315-404 (508)
30 PRK06063 DNA polymerase III su 94.2 0.13 2.9E-06 57.3 7.9 74 826-908 230-305 (313)
31 PLN03123 poly [ADP-ribose] pol 93.8 0.15 3.3E-06 64.6 8.1 87 824-920 389-480 (981)
32 COG5163 NOP7 Protein required 92.7 0.1 2.2E-06 59.7 3.8 90 826-923 348-441 (591)
33 KOG2481 Protein required for n 92.3 0.12 2.6E-06 60.7 3.9 78 719-804 328-416 (570)
34 PRK06195 DNA polymerase III su 92.0 1.1 2.4E-05 49.8 10.8 156 738-908 130-306 (309)
35 KOG2481 Protein required for n 91.7 0.22 4.7E-06 58.7 5.0 86 826-918 325-413 (570)
36 PRK14350 ligA NAD-dependent DN 90.9 0.72 1.6E-05 56.7 8.6 71 827-906 592-663 (669)
37 COG5275 BRCT domain type II [G 90.4 1.2 2.5E-05 48.0 8.4 74 718-791 156-230 (276)
38 COG5163 NOP7 Protein required 90.4 0.28 6E-06 56.4 4.1 78 719-804 351-440 (591)
39 PRK07956 ligA NAD-dependent DN 89.3 1.2 2.5E-05 54.8 8.6 72 828-908 590-662 (665)
40 PRK14351 ligA NAD-dependent DN 89.0 1.3 2.8E-05 54.6 8.7 74 827-909 608-683 (689)
41 COG0272 Lig NAD-dependent DNA 88.8 1.3 2.9E-05 54.0 8.4 72 827-907 593-665 (667)
42 KOG3524 Predicted guanine nucl 86.2 0.39 8.6E-06 58.3 2.1 88 717-806 209-296 (850)
43 TIGR00575 dnlj DNA ligase, NAD 83.6 2.4 5.1E-05 52.1 7.0 68 827-903 583-651 (652)
44 KOG3548 DNA damage checkpoint 79.9 2.7 5.8E-05 52.9 5.6 99 825-925 922-1040(1176)
45 COG5275 BRCT domain type II [G 61.6 22 0.00048 38.7 6.7 75 827-909 155-230 (276)
46 PRK05601 DNA polymerase III su 60.5 20 0.00044 41.7 6.7 72 719-791 295-368 (377)
47 KOG2093 Translesion DNA polyme 54.3 21 0.00046 45.2 5.9 127 710-843 39-176 (1016)
48 PF15101 DUF4557: Domain of un 34.6 1E+02 0.0022 33.5 6.4 78 829-920 1-87 (212)
49 TIGR00936 ahcY adenosylhomocys 26.2 2E+02 0.0044 34.0 7.7 63 822-899 23-85 (406)
50 cd03821 GT1_Bme6_like This fam 24.9 76 0.0016 33.2 3.6 29 755-783 281-311 (375)
51 PRK05601 DNA polymerase III su 23.9 1.9E+02 0.0041 34.0 6.8 74 826-909 292-368 (377)
52 KOG2043 Signaling protein SWIF 23.5 47 0.001 42.7 2.1 88 105-193 251-338 (896)
53 PF05991 NYN_YacP: YacP-like N 20.4 3.3E+02 0.0072 28.0 7.1 66 828-910 64-129 (166)
54 COG4446 Uncharacterized protei 20.1 79 0.0017 31.9 2.4 28 238-265 107-134 (141)
55 cd03799 GT1_amsK_like This is 20.1 1.6E+02 0.0035 31.3 5.0 19 767-785 275-293 (355)
No 1
>KOG2043 consensus Signaling protein SWIFT and related BRCT domain proteins [Transcription; Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=100.00 E-value=2.9e-33 Score=334.39 Aligned_cols=260 Identities=34% Similarity=0.494 Sum_probs=221.9
Q ss_pred CCCCCCCCcccccccCCCCcccCCcccccccccccccchhhHHHHhhhcCCCCCCCccchhhhhccCCCeEEEEcCCCCH
Q 002369 653 ESPCTSPANCITPVNAASPVCMGNGYIKQSCRKNLAKSCLVKEINRLIATEPEPLSPLKDLRKRRDMASIQVLFSHHLDE 732 (930)
Q Consensus 653 ~~~~~tp~~~~~~~~~~s~~~~~~~~~k~~c~r~L~rs~~~kEL~~L~~~~~ep~~~~Kdsr~rk~ms~vrVlFSG~~de 732 (930)
..+...+....++-..+.|+|+..+|+...| +-..+..+|+.....+..++.. +| +.|+|+++.+.
T Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sr---~~~t~~~~e~~s~~~~~~e~~~------~r-----~~~lfs~~~~~ 670 (896)
T KOG2043|consen 605 KPKTSQSSSQGESCPDVPTICVRTNYSGASR---LASTPAASELRSSSANLNELAS------KR-----IEVLFSDKNDG 670 (896)
T ss_pred CcccccccccCCCCCCcccccccccccccch---hccccchhhhhhhhhccchhhc------cc-----eeeeeeeccCc
Confidence 3343344445567888999999999766555 5577788888877666666664 11 99999999876
Q ss_pred HHHHHHHHHHHHcCCEEeccCCCceEEEeCCCCCcHHHHHHHHCCCCEecHHHHHHHHHhCCCCCCcCcccCCchhhhhc
Q 002369 733 DIIKQQKKILDRLGASEVSSITDATHFVTDIFVRTRNMLEAIASGKPVVTHLWLESIAQVKIHIDEESYLLRDTKKEKEF 812 (930)
Q Consensus 733 e~~k~LKkiIkkLGG~Vaddisk~THLVa~k~~RT~KfL~AIA~GkpIVSp~WL~eClkagk~VDEe~YeL~D~e~Eke~ 812 (930)
.. ++..++.|||.++.++.++||+|+++++||.|||+||++|+|||+++||.+|++.|.|+||++|+|.|.+.|++|
T Consensus 671 ~~---~k~~~k~lg~s~~ss~~e~Th~i~~rirRT~k~Leai~~G~~ivT~~wL~s~~k~g~~~dek~yil~D~ekEk~~ 747 (896)
T KOG2043|consen 671 KN---YKLAKKFLGGSVASSDSEATHFIADRIRRTLKFLEAISSGKPLVTPQWLVSSLKSGEKLDEKPYILHDEEKEKEF 747 (896)
T ss_pred hh---hhhHHhhccceeecccccceeeeehhhhccHHHHhhhccCCcccchHHHHHHhhccccccCccccccCHHHHhcc
Confidence 53 567888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchHHhhhccCCCCCCCceEEEeCCCCCCHHHHHHHHHhCCcEEEeccCcccccC----CCCCCcEEEEecCCchhcc
Q 002369 813 GFSMPASLARARKHPLLKDQRVLITPNIKPSKETISSLIKSVHGQAVERLGRSALKD----DKLPDDLLILSCEEDYEIC 888 (930)
Q Consensus 813 GfsL~~SL~rArk~~LFkG~rfyItp~vkPske~L~~LIeagGGkVV~~~prs~lKd----~~~pd~~IVISceeD~~~~ 888 (930)
||+|..++.||+..++|.|+.||+++.+.|+...+.+||+++||.|+...++..... ...+.++++|+|++|..+|
T Consensus 748 gf~l~ssl~RAr~~plL~g~~v~vtp~v~p~~~~v~eiie~~ggnvv~~~p~~~~~~k~~l~~~~~~~v~itc~~D~~~~ 827 (896)
T KOG2043|consen 748 GFRLKSSLLRARADPLLEGINVHVTPSVTPSPKTVVEIIEISGGNVVSDSPKGVYTKKIVLSAHDLDVVGITCSEDRTFC 827 (896)
T ss_pred CcchhhHHHHhhcchhhcCceEEeccccccCcchhHHHHhhcCcceecccCccceecccccccCcccceeeccccccccc
Confidence 999999999999999999999999999999999999999999999998877532111 1122467999999999999
Q ss_pred HHHHhcCCe---EEeHHHHHHH-HhccccccccccccccccccCC
Q 002369 889 EPFLEKGAA---VYSSELLLNG-MVTQKLEYERYYMFIVLFTDLK 929 (930)
Q Consensus 889 ~~ll~~Gi~---VVSsEWILdS-IL~QkLe~E~y~Lf~d~v~~~~ 929 (930)
..++..+.+ +|+++++|.. +..|..++..|++..+.|+.++
T Consensus 828 ~~fl~~~~~~~~i~~~~~~l~~~~v~q~~~~~~~ri~l~~v~~~~ 872 (896)
T KOG2043|consen 828 DNFLDNGLEQENIFSPEYVLKGGLVQQQEPSPALRIPLDNVTTTK 872 (896)
T ss_pred ccccccccccccccchHhhhhccceeecccccceecccccccccc
Confidence 999999999 9999999998 4457778999999998887653
No 2
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=99.48 E-value=1.2e-13 Score=161.48 Aligned_cols=187 Identities=19% Similarity=0.235 Sum_probs=126.7
Q ss_pred CeEEEEcCCCCHHHHHHHHHHHHHcCCEEeccCC-CceEEEeCC-----CCCcHHHHHHHHCCCCEecHHHHHHHHHhCC
Q 002369 721 SIQVLFSHHLDEDIIKQQKKILDRLGASEVSSIT-DATHFVTDI-----FVRTRNMLEAIASGKPVVTHLWLESIAQVKI 794 (930)
Q Consensus 721 ~vrVlFSG~~dee~~k~LKkiIkkLGG~Vaddis-k~THLVa~k-----~~RT~KfL~AIA~GkpIVSp~WL~eClkagk 794 (930)
..+.+.+|.++++. ..+.++... ++...+. .+||+|+.. +.||+|||.+|+.|+||++..|+.+|++.++
T Consensus 478 k~~~~~s~l~p~ek-~~v~~~a~~---t~~k~~~~~~thvi~~~~~~g~c~rTlk~~~gil~gkwi~~~~w~~~s~k~~~ 553 (684)
T KOG4362|consen 478 KLVLLVSGLTPSEK-QLVEKFAVD---TISKFWIEPVTHVIASTDLEGACLRTLKVLMGILRGKWILSYDWVLASLKLRK 553 (684)
T ss_pred ceeeeeccCCcchH-HHHHHHHHH---HHhhccCCCceeeeeecccccchhhhHHHHHHhhcCceeeeHHHHHHHHHhcC
Confidence 45667899988774 334444433 5555554 799999963 7899999999999999999999999999999
Q ss_pred CCCCcCcccCCchhhhhcCCCchHHhhhccCCCCCCCceEEEeCC-CCCCHHHHHHHHHhCCcEEEeccCcccccCCCCC
Q 002369 795 HIDEESYLLRDTKKEKEFGFSMPASLARARKHPLLKDQRVLITPN-IKPSKETISSLIKSVHGQAVERLGRSALKDDKLP 873 (930)
Q Consensus 795 ~VDEe~YeL~D~e~Eke~GfsL~~SL~rArk~~LFkG~rfyItp~-vkPske~L~~LIeagGGkVV~~~prs~lKd~~~p 873 (930)
|++|++|+|.-.--...-|.......+..++.+||.|..||+.+. ..++.+.|..||.++||.++...+.. ..+.. .
T Consensus 554 ~~~eepfEl~~d~~~~~~~~~~~~~~a~s~~~kLf~gl~~~~~g~fs~~p~~~l~~l~~~~gg~~l~~~~~~-~~~~k-~ 631 (684)
T KOG4362|consen 554 WVSEEPFELQIDVPGAREGPKEKRLRAESYKPKLFEGLKFYFVGDFSNPPKEQLQELVHLAGGTILQVPRVA-YSDKK-K 631 (684)
T ss_pred CCCCCCeeEeecccCcccCcccccccccccCcchhcCCcceeecccccCcHHHHHHHHhhcCcceeeccCcc-ccccc-c
Confidence 999999999843211111222222122234578999999988755 45779999999999999999765432 11111 1
Q ss_pred CcEEEEecC--Cchhcc------HHH-HhcCCeEEeHHHHHHHHhcccc
Q 002369 874 DDLLILSCE--EDYEIC------EPF-LEKGAAVYSSELLLNGMVTQKL 913 (930)
Q Consensus 874 d~~IVISce--eD~~~~------~~l-l~~Gi~VVSsEWILdSIL~QkL 913 (930)
..+.+++-. -+...| ..+ ...+++.++..||+++|+-|++
T Consensus 632 s~~~~~~~~~~~~~~~~~k~~~~ea~~~s~~a~~~~~~wvl~s~a~~~~ 680 (684)
T KOG4362|consen 632 STIVVLSEKPVLDSILWQKVNDAEALALSQRARAVSSSWVLDSIAGYQI 680 (684)
T ss_pred cceeEeecccCCCchhhhhhccHHHHHHhcCCCccchhhhhcchhceee
Confidence 112222210 111111 112 2468999999999999997654
No 3
>KOG3548 consensus DNA damage checkpoint protein RHP9/CRB2/53BP1 [Replication, recombination and repair]
Probab=99.37 E-value=1.8e-12 Score=153.48 Aligned_cols=198 Identities=17% Similarity=0.201 Sum_probs=125.7
Q ss_pred cCCCeEEEEcCCCCHHHHHHHHHHHHHcCCEEeccCC---------------------------CceEEEeCCCCCcHHH
Q 002369 718 DMASIQVLFSHHLDEDIIKQQKKILDRLGASEVSSIT---------------------------DATHFVTDIFVRTRNM 770 (930)
Q Consensus 718 ~ms~vrVlFSG~~dee~~k~LKkiIkkLGG~Vaddis---------------------------k~THLVa~k~~RT~Kf 770 (930)
-|.++.|+||+....+ +....-+...||.|.+..- ..-.||+++..||.||
T Consensus 925 iFd~cvF~lTsa~~sd--~~~r~s~e~~gg~vle~gl~~~Fn~p~~g~~~~lr~Ln~~q~~ks~~qalLIsdth~Rt~KY 1002 (1176)
T KOG3548|consen 925 IFDGCVFMLTSANRSD--SASRPSMEKHGGLVLEKGLMNLFNTPFKGGGIVLRQLNSFQERKSNYQALLISDTHYRTHKY 1002 (1176)
T ss_pred hhcceeEEEeccccch--hhhhhhhhccCChhhhccccccccccccCCcchHHhhhHHhhhccccceeEeehhhhHHHHH
Confidence 4678999999965443 2344556667776654310 1235899999999999
Q ss_pred HHHHHCCCCEecHHHHHHHHHhCCCCCCcCcccCCchhhhhcCCCchHHhh-hcc---C-----------CCCCCCceEE
Q 002369 771 LEAIASGKPVVTHLWLESIAQVKIHIDEESYLLRDTKKEKEFGFSMPASLA-RAR---K-----------HPLLKDQRVL 835 (930)
Q Consensus 771 L~AIA~GkpIVSp~WL~eClkagk~VDEe~YeL~D~e~Eke~GfsL~~SL~-rAr---k-----------~~LFkG~rfy 835 (930)
|.|+|+|+|+|++.||.+|++++++||..+|+|.... .|.+...+. +.+ . +..+.|+.|.
T Consensus 1003 LeaLA~giPcVh~~fI~aC~e~nr~Vdy~~YLLpsGy-----S~rlds~l~~~i~~fn~~~nLkd~~l~vk~~l~~~~v~ 1077 (1176)
T KOG3548|consen 1003 LEALARGIPCVHNTFIQACGEQNRCVDYTDYLLPSGY-----SIRLDSQLMPAIEPFNPSENLKDTTLYVKSTLSAREVT 1077 (1176)
T ss_pred HHHHHcCCCcccHHHHHHHHhccccccchhhcccCcc-----ccccccccccCccccCchhhccceeeEeeccccceeEE
Confidence 9999999999999999999999999999999998532 222211111 111 0 2223333333
Q ss_pred EeCCCCCCHHHHHHHHHhCCcEEEeccCcccc-cCCCCCCcEEEEecCCchhccHHHH-hcCCeEEeHHHHHHHHhcc--
Q 002369 836 ITPNIKPSKETISSLIKSVHGQAVERLGRSAL-KDDKLPDDLLILSCEEDYEICEPFL-EKGAAVYSSELLLNGMVTQ-- 911 (930)
Q Consensus 836 Itp~vkPske~L~~LIeagGGkVV~~~prs~l-Kd~~~pd~~IVISceeD~~~~~~ll-~~Gi~VVSsEWILdSIL~Q-- 911 (930)
+.+.-....+.+..+++++|.-++......+. .|-.+-..-+|+.|+.-......++ ..++++|++|||++||+.+
T Consensus 1078 q~gp~~~f~e~~~e~le~G~aa~vd~~hada~~~D~~l~~fdvvl~d~~~~~svmk~ad~l~~pvvs~EWvIQtiI~~~~ 1157 (1176)
T KOG3548|consen 1078 QTGPGGTFIEIWKEILELGGAAVVDGYHADAETLDETLLKFDVVLVDGTFRDSVMKYADTLGAPVVSSEWVIQTIILGKA 1157 (1176)
T ss_pred EecCCcchHHHHHHHHHhhchheecccccccccccccccceeEEEecCccHHHHHHHHHHhCCCccChhHhheeeecccc
Confidence 33222234678889999888887754322111 1111111225556665554444554 4689999999999999965
Q ss_pred -----ccccccccccc
Q 002369 912 -----KLEYERYYMFI 922 (930)
Q Consensus 912 -----kLe~E~y~Lf~ 922 (930)
...|+.|+|.+
T Consensus 1158 i~~~~hpk~d~y~~h~ 1173 (1176)
T KOG3548|consen 1158 IEPNAHPKFDPYRLHH 1173 (1176)
T ss_pred CCcccCccccccchhc
Confidence 35667777653
No 4
>KOG3524 consensus Predicted guanine nucleotide exchange factor (PEBBLE) [Signal transduction mechanisms]
Probab=99.16 E-value=1.4e-11 Score=142.91 Aligned_cols=185 Identities=9% Similarity=0.091 Sum_probs=144.5
Q ss_pred cchhhhhccCCCeEEEEcCCCCHHHHHHHHHHHHHcCCEEeccCC-CceEEEeCCCCCcHHHHHHHHCCCCEecHHHHHH
Q 002369 710 LKDLRKRRDMASIQVLFSHHLDEDIIKQQKKILDRLGASEVSSIT-DATHFVTDIFVRTRNMLEAIASGKPVVTHLWLES 788 (930)
Q Consensus 710 ~Kdsr~rk~ms~vrVlFSG~~dee~~k~LKkiIkkLGG~Vaddis-k~THLVa~k~~RT~KfL~AIA~GkpIVSp~WL~e 788 (930)
..++.|...|.++..||||+...+. .+..++..|||.|..+.. +.||||+.... ..||..|+.. .|++.|.||.+
T Consensus 110 ~srply~~~m~~vvlcfTg~rkk~e--~lv~lvh~mgg~irkd~nsktthli~n~s~-gek~~~a~t~-~~~~rp~wv~~ 185 (850)
T KOG3524|consen 110 AARPLYCELMKDVVMCFTGERKKKE--ELVDLVHYMGGSIRKDTNSKTTHLIANKVE-GEKQSIALVG-VPTMRPDWVTE 185 (850)
T ss_pred cCCcccchhhcCceeeeeccchhhH--HHHHHHHHhcceeEeeeccCceEEEeeccc-ceEEEEEeec-cceechHhhhh
Confidence 4566677789999999999986653 689999999999999886 89999999775 7788888877 99999999999
Q ss_pred HHHhCCCCCCcCcccCCchhhhhcCCCchHHhhhccCCCCCCCceEEEeCCCCCCHHHHHHHHHhCCcEEEeccCccccc
Q 002369 789 IAQVKIHIDEESYLLRDTKKEKEFGFSMPASLARARKHPLLKDQRVLITPNIKPSKETISSLIKSVHGQAVERLGRSALK 868 (930)
Q Consensus 789 Clkagk~VDEe~YeL~D~e~Eke~GfsL~~SL~rArk~~LFkG~rfyItp~vkPske~L~~LIeagGGkVV~~~prs~lK 868 (930)
||+...|++ |-|..+.+...| +.+.|+|..|++.++.......|....+..||+.....+.+
T Consensus 186 aw~~rn~~y---fda~~~~f~d~h------------rl~~feg~~~~f~gF~~ee~~~m~~sle~~gg~~a~~d~~c--- 247 (850)
T KOG3524|consen 186 AWKHRNDSY---FDAMEPCFVDKH------------RLGVFEGLSLFFHGFKQEEIDDMLRSLENTGGKLAPSDTLC--- 247 (850)
T ss_pred hhcCcchhh---hhhhccchhhhh------------ccccccCCeEeecCCcHHHHHHHHHHHHhcCCcccCCCCCc---
Confidence 999987764 223323333333 45789999999999887778889999999999987643332
Q ss_pred CCCCCCcEEEEecCCchhccHHHH-hcCCeEEeHHHHHHHHhccccccccccccccc
Q 002369 869 DDKLPDDLLILSCEEDYEICEPFL-EKGAAVYSSELLLNGMVTQKLEYERYYMFIVL 924 (930)
Q Consensus 869 d~~~pd~~IVISceeD~~~~~~ll-~~Gi~VVSsEWILdSIL~QkLe~E~y~Lf~d~ 924 (930)
.+|+..++... ..++. .....++..||+|-+|.+|...++..+|+.++
T Consensus 248 -------thvvv~e~~~~-~~p~~~s~~~~~vk~ewfw~siq~g~~a~e~~yl~~~~ 296 (850)
T KOG3524|consen 248 -------THVVVNEDNDE-VEPLAVSSNQVHVKKEWFWVSIQRGCCAIEDNYLLPTG 296 (850)
T ss_pred -------eeEeecCCccc-cccccccccceeecccceEEEEecchhccccceecccc
Confidence 45555543332 23333 34567999999999999999999999998876
No 5
>PF00533 BRCT: BRCA1 C Terminus (BRCT) domain; InterPro: IPR001357 The BRCT domain (after the C_terminal domain of a breast cancer susceptibility protein) is found predominantly in proteins involved in cell cycle checkpoint functions responsive to DNA damage [], for example as found in the breast cancer DNA-repair protein BRCA1. The domain is an approximately 100 amino acid tandem repeat, which appears to act as a phospho-protein binding domain []. A chitin biosynthesis protein from yeast also seems to belong to this group. ; GO: 0005622 intracellular; PDB: 3L46_A 3AL3_A 3AL2_A 1WF6_A 3II6_X 2NTE_B 3FA2_A 2R1Z_A 2COK_A 2K7F_A ....
Probab=99.15 E-value=1.7e-10 Score=98.60 Aligned_cols=72 Identities=21% Similarity=0.353 Sum_probs=65.0
Q ss_pred cCCCeEEEEcCCCCHHHHHHHHHHHHHcCCEEeccCC-CceEEEeCCC-CCcHHHHHHHHCCCCEecHHHHHHHH
Q 002369 718 DMASIQVLFSHHLDEDIIKQQKKILDRLGASEVSSIT-DATHFVTDIF-VRTRNMLEAIASGKPVVTHLWLESIA 790 (930)
Q Consensus 718 ~ms~vrVlFSG~~dee~~k~LKkiIkkLGG~Vaddis-k~THLVa~k~-~RT~KfL~AIA~GkpIVSp~WL~eCl 790 (930)
-+.++.|+|+++...+ ++.+.++|+.+||.+...+. .+||||++.. .++.|++.|++.|+|||+++||.+|+
T Consensus 5 ~F~g~~f~i~~~~~~~-~~~l~~~i~~~GG~v~~~~~~~~thvI~~~~~~~~~k~~~~~~~~i~iV~~~Wi~~ci 78 (78)
T PF00533_consen 5 IFEGCTFCISGFDSDE-REELEQLIKKHGGTVSNSFSKKTTHVIVGNPNKRTKKYKAAIANGIPIVSPDWIEDCI 78 (78)
T ss_dssp TTTTEEEEESSTSSSH-HHHHHHHHHHTTEEEESSSSTTSSEEEESSSHCCCHHHHHHHHTTSEEEETHHHHHHH
T ss_pred CCCCEEEEEccCCCCC-HHHHHHHHHHcCCEEEeecccCcEEEEeCCCCCccHHHHHHHHCCCeEecHHHHHHhC
Confidence 4789999998876554 57889999999999998887 7999999987 89999999999999999999999996
No 6
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=99.07 E-value=5.1e-10 Score=91.52 Aligned_cols=71 Identities=24% Similarity=0.449 Sum_probs=61.1
Q ss_pred CeEEEEcCCCCHHHHHHHHHHHHHcCCEEeccCC-CceEEEeCCCCCcHHHHHHHHCCCCEecHHHHHHHHH
Q 002369 721 SIQVLFSHHLDEDIIKQQKKILDRLGASEVSSIT-DATHFVTDIFVRTRNMLEAIASGKPVVTHLWLESIAQ 791 (930)
Q Consensus 721 ~vrVlFSG~~dee~~k~LKkiIkkLGG~Vaddis-k~THLVa~k~~RT~KfL~AIA~GkpIVSp~WL~eClk 791 (930)
++.|+|+|..+......++++++.+||.|...+. .+||||++......++..|+..|+|||+++||.+|++
T Consensus 1 ~~~~~i~g~~~~~~~~~l~~~i~~~Gg~v~~~~~~~~thvI~~~~~~~~~~~~~~~~~~~iV~~~Wi~~~~~ 72 (72)
T cd00027 1 GLTFVITGDLPSEERDELKELIEKLGGKVTSSVSKKTTHVIVGSDAGPKKLLKAIKLGIPIVTPEWLLDCLK 72 (72)
T ss_pred CCEEEEEecCCCcCHHHHHHHHHHcCCEEeccccCCceEEEECCCCCchHHHHHHHcCCeEecHHHHHHHhC
Confidence 4689999987333356789999999999999998 8999999987666669999999999999999999974
No 7
>PF12738 PTCB-BRCT: twin BRCT domain; PDB: 3PA6_A 3KTF_C 2WT8_C 3EF1_A 3EF0_A.
Probab=99.00 E-value=3e-10 Score=96.05 Aligned_cols=62 Identities=24% Similarity=0.409 Sum_probs=52.2
Q ss_pred eEEEEcCCCCHHHHHHHHHHHHHcCCEEeccCC-CceEEEeCCCCCcHHHHHHHHCCCCEecHHH
Q 002369 722 IQVLFSHHLDEDIIKQQKKILDRLGASEVSSIT-DATHFVTDIFVRTRNMLEAIASGKPVVTHLW 785 (930)
Q Consensus 722 vrVlFSG~~dee~~k~LKkiIkkLGG~Vaddis-k~THLVa~k~~RT~KfL~AIA~GkpIVSp~W 785 (930)
++|+||||.+.+ +..+.+++..|||.+..+++ ++||||+... .+.||-.|...|+|||+|+|
T Consensus 1 ~~i~~sg~~~~~-~~~l~~~i~~~Gg~~~~~lt~~~THLI~~~~-~~~K~~~A~~~gi~vV~~~W 63 (63)
T PF12738_consen 1 VVICFSGFSGKE-RSQLRKLIEALGGKYSKDLTKKTTHLICSSP-EGKKYRKAKEWGIPVVSPDW 63 (63)
T ss_dssp -EEEEEEB-TTT-CCHHHHHHHCTT-EEESSSSTT-SEEEEES---HHHHHHHHHCTSEEEEHHH
T ss_pred CEEEECCCCHHH-HHHHHHHHHHCCCEEeccccCCceEEEEeCC-CcHHHHHHHHCCCcEECCCC
Confidence 579999998776 57799999999999999997 8999999766 59999999999999999999
No 8
>smart00292 BRCT breast cancer carboxy-terminal domain.
Probab=98.95 E-value=3e-09 Score=88.94 Aligned_cols=74 Identities=23% Similarity=0.312 Sum_probs=62.1
Q ss_pred CCCeEEEEcC-CCCHHHHHHHHHHHHHcCCEEeccCC--CceEEEeCCCCC-cHHHHHHHHCCCCEecHHHHHHHHHhC
Q 002369 719 MASIQVLFSH-HLDEDIIKQQKKILDRLGASEVSSIT--DATHFVTDIFVR-TRNMLEAIASGKPVVTHLWLESIAQVK 793 (930)
Q Consensus 719 ms~vrVlFSG-~~dee~~k~LKkiIkkLGG~Vaddis--k~THLVa~k~~R-T~KfL~AIA~GkpIVSp~WL~eClkag 793 (930)
+.++.|+|+| +... ..+.+.+++..+||.+...+. .+||||+....- ..+++.|...++|||+++||.+|++.+
T Consensus 3 f~g~~~~~~g~~~~~-~~~~l~~~i~~~Gg~~~~~~~~~~~thvi~~~~~~~~~~~~~~~~~~~~iV~~~Wi~~~~~~~ 80 (80)
T smart00292 3 FKGKVFVITGKFDKN-ERDELKELIEALGGKVTSSLSSKTTTHVIVGSPEGGKLELLLAIALGIPIVTEDWLLDCLKAG 80 (80)
T ss_pred cCCeEEEEeCCCCCc-cHHHHHHHHHHcCCEEecccCccceeEEEEcCCCCccHHHHHHHHcCCCCccHHHHHHHHHCc
Confidence 6789999999 5444 357789999999999999988 799999987433 333799999999999999999999864
No 9
>KOG1929 consensus Nucleotide excision repair factor NEF2, RAD4/CUT5 component [Replication, recombination and repair]
Probab=98.87 E-value=1.2e-08 Score=122.97 Aligned_cols=184 Identities=18% Similarity=0.169 Sum_probs=141.9
Q ss_pred hhhccCCCeEEEEcCCCCHHHHHHHHHHHHHcCCEEeccCC-CceEEEeCCCCCcHHHHHHHHCCCCEecHHHHHHHHHh
Q 002369 714 RKRRDMASIQVLFSHHLDEDIIKQQKKILDRLGASEVSSIT-DATHFVTDIFVRTRNMLEAIASGKPVVTHLWLESIAQV 792 (930)
Q Consensus 714 r~rk~ms~vrVlFSG~~dee~~k~LKkiIkkLGG~Vaddis-k~THLVa~k~~RT~KfL~AIA~GkpIVSp~WL~eClka 792 (930)
.+.+.|.++.|+.|++. +...+.+-+.+..|||.+..+++ .|||||++.+. +-||..|-..+++||+.+|+...++.
T Consensus 5 ~~~~~~~~v~~~~t~i~-p~~~~~l~~~~~~~Gg~~~~~~t~~~thli~~~~~-s~~~~~a~~~~~~~~~~~wi~~~~d~ 82 (811)
T KOG1929|consen 5 LYSKPMSGVTFSPTGIN-PIKREELSKKFIKLGGIDFKDFTPSVTHLIVGSVT-SSKYAAAHRFDIKVLDSSWIDYIYDL 82 (811)
T ss_pred ccCcccCCceeccCcCC-HHHHHHHHHHHHhcCceeeeccCCcCceeeccccc-ccchhhhhcCCCceecchHHHHHHHH
Confidence 45678999999999997 44567888999999999999998 89999999986 77888888899999999999999888
Q ss_pred CCCCCCcCcccCCchhhhhcCCCchHHhhhccCCCCCCCceEEEeCCCCCCHHHHHHHHHhCCcEEEeccCcccccCCCC
Q 002369 793 KIHIDEESYLLRDTKKEKEFGFSMPASLARARKHPLLKDQRVLITPNIKPSKETISSLIKSVHGQAVERLGRSALKDDKL 872 (930)
Q Consensus 793 gk~VDEe~YeL~D~e~Eke~GfsL~~SL~rArk~~LFkG~rfyItp~vkPske~L~~LIeagGGkVV~~~prs~lKd~~~ 872 (930)
+.. . ..=.+.|+... .+ ..+.|.|+.||+++...+.+..+..+|-..||+....+...+
T Consensus 83 ~~~-~-~e~~~~~~l~~-~~------------~~p~~~~~~Vc~tgl~~~eK~ei~~~v~k~gg~~~~~L~s~v------ 141 (811)
T KOG1929|consen 83 WLL-N-KEIRLLDPLRD-TM------------KCPGFFGLKVCLTGLSGDEKSEIKILVPKHGGTLHRSLSSDV------ 141 (811)
T ss_pred hhh-h-ccCccCccchh-hh------------cCCcccceEEEecccchHHHHHHHHHhhhcccEEehhhhhhh------
Confidence 765 3 33223332111 11 347899999999999888999999999999999887654331
Q ss_pred CCcEEEEecCCchhccHHHHhcCCeEEeHHHHHHHHhccc-cccccccccc
Q 002369 873 PDDLLILSCEEDYEICEPFLEKGAAVYSSELLLNGMVTQK-LEYERYYMFI 922 (930)
Q Consensus 873 pd~~IVISceeD~~~~~~ll~~Gi~VVSsEWILdSIL~Qk-Le~E~y~Lf~ 922 (930)
..+++...-....+..+++.+++||+.+|++++|-.-. ++.+.|.+..
T Consensus 142 --~~~~~~~~~~~~kYe~al~wn~~v~~~~w~~~s~~~~~~~~~~~~e~~~ 190 (811)
T KOG1929|consen 142 --NSLKILPEVKTEKYEQALKWNIPVVSDDWLFDSIEKTAVLETKPYEGAP 190 (811)
T ss_pred --heeeeccccchHHHHHHHhhCCccccHHHHhhhhccccccccccccccc
Confidence 23444333333566777888999999999999999744 4555555543
No 10
>KOG3226 consensus DNA repair protein [Replication, recombination and repair]
Probab=98.44 E-value=2.1e-07 Score=103.05 Aligned_cols=86 Identities=16% Similarity=0.266 Sum_probs=78.6
Q ss_pred CCCeEEEEcCCCCHHHHHHHHHHHHHcCCEEeccCC-CceEEEeCCCCCcHHHHHHHHCCCCEecHHHHHHHHHhCCCCC
Q 002369 719 MASIQVLFSHHLDEDIIKQQKKILDRLGASEVSSIT-DATHFVTDIFVRTRNMLEAIASGKPVVTHLWLESIAQVKIHID 797 (930)
Q Consensus 719 ms~vrVlFSG~~dee~~k~LKkiIkkLGG~Vaddis-k~THLVa~k~~RT~KfL~AIA~GkpIVSp~WL~eClkagk~VD 797 (930)
|.+++|++|||...+ +..|......||+++..+|. .||||||. +.-|.||-+-...|--||+-+||.+|....++|+
T Consensus 318 L~GVV~VlSGfqNP~-Rs~LRskAl~LGAkY~pDW~~gsThLICA-F~NTPKy~QV~g~Gg~IV~keWI~~Cy~~kk~lp 395 (508)
T KOG3226|consen 318 LEGVVFVLSGFQNPE-RSTLRSKALTLGAKYQPDWNAGSTHLICA-FPNTPKYRQVEGNGGTIVSKEWITECYAQKKLLP 395 (508)
T ss_pred hhceEEEEecccCch-HHHHHHHHHhhcccccCCcCCCceeEEEe-cCCCcchhhcccCCceEeeHHHHHHHHHHHhhcc
Confidence 889999999998776 56788888899999999998 89999998 6679999999999999999999999999999999
Q ss_pred CcCcccCCc
Q 002369 798 EESYLLRDT 806 (930)
Q Consensus 798 Ee~YeL~D~ 806 (930)
.+-|.+...
T Consensus 396 ~rrYlm~~~ 404 (508)
T KOG3226|consen 396 IRRYLMHAG 404 (508)
T ss_pred HHHHHhcCC
Confidence 999988753
No 11
>PF00533 BRCT: BRCA1 C Terminus (BRCT) domain; InterPro: IPR001357 The BRCT domain (after the C_terminal domain of a breast cancer susceptibility protein) is found predominantly in proteins involved in cell cycle checkpoint functions responsive to DNA damage [], for example as found in the breast cancer DNA-repair protein BRCA1. The domain is an approximately 100 amino acid tandem repeat, which appears to act as a phospho-protein binding domain []. A chitin biosynthesis protein from yeast also seems to belong to this group. ; GO: 0005622 intracellular; PDB: 3L46_A 3AL3_A 3AL2_A 1WF6_A 3II6_X 2NTE_B 3FA2_A 2R1Z_A 2COK_A 2K7F_A ....
Probab=98.38 E-value=1.4e-06 Score=74.47 Aligned_cols=74 Identities=11% Similarity=0.187 Sum_probs=56.3
Q ss_pred CCCCCCceEEEeCCCCCCHHHHHHHHHhCCcEEEeccCcccccCCCCCCcEEEEecCC--chhccHHHHhcCCeEEeHHH
Q 002369 826 HPLLKDQRVLITPNIKPSKETISSLIKSVHGQAVERLGRSALKDDKLPDDLLILSCEE--DYEICEPFLEKGAAVYSSEL 903 (930)
Q Consensus 826 ~~LFkG~rfyItp~vkPske~L~~LIeagGGkVV~~~prs~lKd~~~pd~~IVIScee--D~~~~~~ll~~Gi~VVSsEW 903 (930)
.++|+|+.|||.......++.|+.+|+..||.+...... ...+||.... +..........+++||+++|
T Consensus 3 ~~~F~g~~f~i~~~~~~~~~~l~~~i~~~GG~v~~~~~~---------~~thvI~~~~~~~~~k~~~~~~~~i~iV~~~W 73 (78)
T PF00533_consen 3 PKIFEGCTFCISGFDSDEREELEQLIKKHGGTVSNSFSK---------KTTHVIVGNPNKRTKKYKAAIANGIPIVSPDW 73 (78)
T ss_dssp TTTTTTEEEEESSTSSSHHHHHHHHHHHTTEEEESSSST---------TSSEEEESSSHCCCHHHHHHHHTTSEEEETHH
T ss_pred CCCCCCEEEEEccCCCCCHHHHHHHHHHcCCEEEeeccc---------CcEEEEeCCCCCccHHHHHHHHCCCeEecHHH
Confidence 579999999997666677999999999999999765422 1235555443 34444555678999999999
Q ss_pred HHHHH
Q 002369 904 LLNGM 908 (930)
Q Consensus 904 ILdSI 908 (930)
|++||
T Consensus 74 i~~ci 78 (78)
T PF00533_consen 74 IEDCI 78 (78)
T ss_dssp HHHHH
T ss_pred HHHhC
Confidence 99997
No 12
>smart00292 BRCT breast cancer carboxy-terminal domain.
Probab=98.13 E-value=1.2e-05 Score=67.23 Aligned_cols=76 Identities=16% Similarity=0.225 Sum_probs=55.9
Q ss_pred CCCCCceEEEeC-CCCCCHHHHHHHHHhCCcEEEeccCcccccCCCCCCcEEEEecCCchhc--cHHHHhcCCeEEeHHH
Q 002369 827 PLLKDQRVLITP-NIKPSKETISSLIKSVHGQAVERLGRSALKDDKLPDDLLILSCEEDYEI--CEPFLEKGAAVYSSEL 903 (930)
Q Consensus 827 ~LFkG~rfyItp-~vkPske~L~~LIeagGGkVV~~~prs~lKd~~~pd~~IVISceeD~~~--~~~ll~~Gi~VVSsEW 903 (930)
++|+|+.||+.+ ...+.++.+.++|..+||.++...... ...++|....+... +......+++||+++|
T Consensus 1 ~~f~g~~~~~~g~~~~~~~~~l~~~i~~~Gg~~~~~~~~~--------~~thvi~~~~~~~~~~~~~~~~~~~~iV~~~W 72 (80)
T smart00292 1 KLFKGKVFVITGKFDKNERDELKELIEALGGKVTSSLSSK--------TTTHVIVGSPEGGKLELLLAIALGIPIVTEDW 72 (80)
T ss_pred CccCCeEEEEeCCCCCccHHHHHHHHHHcCCEEecccCcc--------ceeEEEEcCCCCccHHHHHHHHcCCCCccHHH
Confidence 479999999998 556779999999999999998765320 22455554433322 2344567999999999
Q ss_pred HHHHHhc
Q 002369 904 LLNGMVT 910 (930)
Q Consensus 904 ILdSIL~ 910 (930)
|++|+-.
T Consensus 73 i~~~~~~ 79 (80)
T smart00292 73 LLDCLKA 79 (80)
T ss_pred HHHHHHC
Confidence 9999853
No 13
>PLN03122 Poly [ADP-ribose] polymerase; Provisional
Probab=98.02 E-value=1.1e-05 Score=98.47 Aligned_cols=87 Identities=22% Similarity=0.303 Sum_probs=76.1
Q ss_pred ccCCCeEEEEcCCCCHHHHHHHHHHHHHcCCEEeccCCCceEEEeCC--CCC--cHHHHHHHHCCCCEecHHHHHHHHHh
Q 002369 717 RDMASIQVLFSHHLDEDIIKQQKKILDRLGASEVSSITDATHFVTDI--FVR--TRNMLEAIASGKPVVTHLWLESIAQV 792 (930)
Q Consensus 717 k~ms~vrVlFSG~~dee~~k~LKkiIkkLGG~Vaddisk~THLVa~k--~~R--T~KfL~AIA~GkpIVSp~WL~eClka 792 (930)
+.+.+..|+|||.... .+..++++|+.+||+|+.+++.+||||+.. +.+ +-|+-.|...|+|||+.+||.+|++.
T Consensus 188 kpL~G~~fviTGtl~~-sr~elK~~Ie~~GGkvsssVs~~T~lIvt~~ev~k~gsSKlkkAk~lgIpIVsEd~L~d~i~~ 266 (815)
T PLN03122 188 KPFSGMMISLSGRLSR-THQYWKKDIEKHGGKVANSVEGVTCLVVSPAERERGGSSKIAEAMERGIPVVREAWLIDSIEK 266 (815)
T ss_pred CCcCCcEEEEeCCCCC-CHHHHHHHHHHcCCEEccccccceEEEEcCccccccCccHHHHHHHcCCcCccHHHHHHHHhc
Confidence 4588999999997654 356789999999999999999999999865 322 47999999999999999999999999
Q ss_pred CCCCCCcCcccC
Q 002369 793 KIHIDEESYLLR 804 (930)
Q Consensus 793 gk~VDEe~YeL~ 804 (930)
+..+++..|.+.
T Consensus 267 ~k~~~~~~y~l~ 278 (815)
T PLN03122 267 QEAQPLEAYDVV 278 (815)
T ss_pred CCcccchhhhhc
Confidence 999999999875
No 14
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=97.95 E-value=4.6e-05 Score=62.21 Aligned_cols=69 Identities=13% Similarity=0.272 Sum_probs=52.5
Q ss_pred CceEEEeCCC-CCCHHHHHHHHHhCCcEEEeccCcccccCCCCCCcEEEEecCCchhc-cHHHHhcCCeEEeHHHHHHHH
Q 002369 831 DQRVLITPNI-KPSKETISSLIKSVHGQAVERLGRSALKDDKLPDDLLILSCEEDYEI-CEPFLEKGAAVYSSELLLNGM 908 (930)
Q Consensus 831 G~rfyItp~v-kPske~L~~LIeagGGkVV~~~prs~lKd~~~pd~~IVISceeD~~~-~~~ll~~Gi~VVSsEWILdSI 908 (930)
|+.|||++.. .+.+..|+++|+.+||.++..... ...+||....+... .......+++||+++||++|+
T Consensus 1 ~~~~~i~g~~~~~~~~~l~~~i~~~Gg~v~~~~~~---------~~thvI~~~~~~~~~~~~~~~~~~~iV~~~Wi~~~~ 71 (72)
T cd00027 1 GLTFVITGDLPSEERDELKELIEKLGGKVTSSVSK---------KTTHVIVGSDAGPKKLLKAIKLGIPIVTPEWLLDCL 71 (72)
T ss_pred CCEEEEEecCCCcCHHHHHHHHHHcCCEEeccccC---------CceEEEECCCCCchHHHHHHHcCCeEecHHHHHHHh
Confidence 6789999887 678999999999999999876531 23466655444332 344556899999999999997
No 15
>PLN03123 poly [ADP-ribose] polymerase; Provisional
Probab=97.81 E-value=4.2e-05 Score=95.17 Aligned_cols=90 Identities=16% Similarity=0.149 Sum_probs=76.4
Q ss_pred hhhccCCCeEEEEcCCCCHHHHHHHHHHHHHcCCEEeccCC-CceEEEeCC--CCCcHHHHHHHHCCCCEecHHHHHHHH
Q 002369 714 RKRRDMASIQVLFSHHLDEDIIKQQKKILDRLGASEVSSIT-DATHFVTDI--FVRTRNMLEAIASGKPVVTHLWLESIA 790 (930)
Q Consensus 714 r~rk~ms~vrVlFSG~~dee~~k~LKkiIkkLGG~Vaddis-k~THLVa~k--~~RT~KfL~AIA~GkpIVSp~WL~eCl 790 (930)
+..+-+.+++|+++|-.... ..++++.|+.+||++...+. .+||||+.. -.+..|+-.|...|+|||+.+||.+|.
T Consensus 389 ~~~~~l~~~~i~i~G~~~~~-~~~~k~~Ie~~GG~~s~~v~~~~t~l~tt~e~~k~~~kv~qAk~~~ipIVsedwL~ds~ 467 (981)
T PLN03123 389 SESEFLGDLKVSIVGASKEK-VTEWKAKIEEAGGVFHATVKKDTNCLVVCGELDDEDAEMRKARRMKIPIVREDYLVDCF 467 (981)
T ss_pred ccCCCcCCeEEEEecCCCCc-HHHHHHHHHhcCCEEeeeccCCceEEEccHHhhhcchHHHHHHhcCCCcccHHHHHHHH
Confidence 44456889999999976543 36788999999999999987 799999875 256788999999999999999999999
Q ss_pred HhCCCCCCcCcccC
Q 002369 791 QVKIHIDEESYLLR 804 (930)
Q Consensus 791 kagk~VDEe~YeL~ 804 (930)
+.+..+++..|.+.
T Consensus 468 ~~~~~~p~~~y~~~ 481 (981)
T PLN03123 468 KKKKKLPFDKYKLE 481 (981)
T ss_pred hccccCcchhhhhc
Confidence 99988888888665
No 16
>KOG1929 consensus Nucleotide excision repair factor NEF2, RAD4/CUT5 component [Replication, recombination and repair]
Probab=97.66 E-value=0.00027 Score=86.35 Aligned_cols=151 Identities=17% Similarity=0.174 Sum_probs=111.5
Q ss_pred CccchhhhhccCCCeEEEEcCCCCHHHHHHHHHHHHHcCCEEeccCC-CceEEEeCCCCCcHHHHHHHHCCCCEecHHHH
Q 002369 708 SPLKDLRKRRDMASIQVLFSHHLDEDIIKQQKKILDRLGASEVSSIT-DATHFVTDIFVRTRNMLEAIASGKPVVTHLWL 786 (930)
Q Consensus 708 ~~~Kdsr~rk~ms~vrVlFSG~~dee~~k~LKkiIkkLGG~Vaddis-k~THLVa~k~~RT~KfL~AIA~GkpIVSp~WL 786 (930)
.++-+.-+...+.+++||.||+...+ +..++..|-.+||.....+. .++|++.....-|.||-+|+...++||+.+|+
T Consensus 93 ~~l~~~~~~p~~~~~~Vc~tgl~~~e-K~ei~~~v~k~gg~~~~~L~s~v~~~~~~~~~~~~kYe~al~wn~~v~~~~w~ 171 (811)
T KOG1929|consen 93 DPLRDTMKCPGFFGLKVCLTGLSGDE-KSEIKILVPKHGGTLHRSLSSDVNSLKILPEVKTEKYEQALKWNIPVVSDDWL 171 (811)
T ss_pred ccchhhhcCCcccceEEEecccchHH-HHHHHHHhhhcccEEehhhhhhhheeeeccccchHHHHHHHhhCCccccHHHH
Confidence 34455566678899999999998765 46789999999999999887 67777777666689999999999999999999
Q ss_pred HHHHHhCCCCCCcCcccCCchhhhhc--CCCc------------------hHHhhh-----c-cCCCCCCCceEEEeCCC
Q 002369 787 ESIAQVKIHIDEESYLLRDTKKEKEF--GFSM------------------PASLAR-----A-RKHPLLKDQRVLITPNI 840 (930)
Q Consensus 787 ~eClkagk~VDEe~YeL~D~e~Eke~--GfsL------------------~~SL~r-----A-rk~~LFkG~rfyItp~v 840 (930)
++|+..+..+++..|++......... +..+ .....+ . ....+..++.+++.+..
T Consensus 172 ~~s~~~~~~~~~~~~e~~~~~~~is~~~~~~~~~~~~~~~s~t~~~~~~~~~~~~n~~~~p~~a~~~~~~~c~v~~s~~~ 251 (811)
T KOG1929|consen 172 FDSIEKTAVLETKPYEGAPVAEAISGPIGSTLPKEILDGDSRTANDTWSTSKVVTNIKVLPFQAKIGNLDDCLVETSGTT 251 (811)
T ss_pred hhhhcccccccccccccccccceeccCCccccccccccccchhhhccccchhcccccccchhhhhccccccceeeecCCc
Confidence 99999999999999998763111000 0000 000001 0 01235677788888776
Q ss_pred CCCHHHHHHHHHhCCcEEE
Q 002369 841 KPSKETISSLIKSVHGQAV 859 (930)
Q Consensus 841 kPske~L~~LIeagGGkVV 859 (930)
...++.+.+++..+||.-+
T Consensus 252 ~~~~s~l~r~~~~g~~~~~ 270 (811)
T KOG1929|consen 252 SRNRSALSRLSNNGGSLRF 270 (811)
T ss_pred ccchhHhHHhhhcccceee
Confidence 6678889999999888644
No 17
>KOG0966 consensus ATP-dependent DNA ligase IV [Replication, recombination and repair]
Probab=96.46 E-value=0.042 Score=67.10 Aligned_cols=83 Identities=14% Similarity=0.133 Sum_probs=65.6
Q ss_pred cCCCeEE-EEcCCCCHHHHHHHHHHHHHcCCEEeccCC-CceEEEe--CCCCCcHHHHHHHHCCCCEecHHHHHHHHHhC
Q 002369 718 DMASIQV-LFSHHLDEDIIKQQKKILDRLGASEVSSIT-DATHFVT--DIFVRTRNMLEAIASGKPVVTHLWLESIAQVK 793 (930)
Q Consensus 718 ~ms~vrV-lFSG~~dee~~k~LKkiIkkLGG~Vaddis-k~THLVa--~k~~RT~KfL~AIA~GkpIVSp~WL~eClkag 793 (930)
-+.++.| +|+|....+.+..+.++|...||.|+..+. ..||.|+ +.- -|..-..|+..++-||.|+||.+|.+..
T Consensus 633 if~gl~f~Vlsgt~~~~tk~~le~~ivenGG~iv~nv~p~~~~ci~~a~~e-t~~vk~~~~~~~cdVl~p~Wlldcc~~~ 711 (881)
T KOG0966|consen 633 IFDGLEFCVLSGTSETHTKAKLEEIIVENGGKIVQNVGPSDTLCIATAGKE-TTRVKAQAIKRSCDVLKPAWLLDCCKKQ 711 (881)
T ss_pred hhcCeeEEEecCCcccccHHHHHHHHHHcCCEEEEcCCCCCcceEEecccc-chHHHHHHHhccCceeeHHHHHHHHhhh
Confidence 4566766 568876555567899999999999999987 4888885 544 3666677888999999999999999998
Q ss_pred CCCCCcCc
Q 002369 794 IHIDEESY 801 (930)
Q Consensus 794 k~VDEe~Y 801 (930)
++++-.++
T Consensus 712 ~l~p~~P~ 719 (881)
T KOG0966|consen 712 RLLPWLPR 719 (881)
T ss_pred hccccccH
Confidence 88776554
No 18
>KOG0966 consensus ATP-dependent DNA ligase IV [Replication, recombination and repair]
Probab=96.43 E-value=0.0072 Score=73.36 Aligned_cols=90 Identities=14% Similarity=0.217 Sum_probs=71.2
Q ss_pred CCCCCCceEEEeCCCC--CCHHHHHHHHHhCCcEEEeccCcccccCCCCCCcEEEEecCCchhccHHHHhcCCeEEeHHH
Q 002369 826 HPLLKDQRVLITPNIK--PSKETISSLIKSVHGQAVERLGRSALKDDKLPDDLLILSCEEDYEICEPFLEKGAAVYSSEL 903 (930)
Q Consensus 826 ~~LFkG~rfyItp~vk--Pske~L~~LIeagGGkVV~~~prs~lKd~~~pd~~IVISceeD~~~~~~ll~~Gi~VVSsEW 903 (930)
..+|.|..||+.+... +.+..|+++|...||.++...... ...+++++..+....+..++.++..|+.++|
T Consensus 631 s~if~gl~f~Vlsgt~~~~tk~~le~~ivenGG~iv~nv~p~-------~~~ci~~a~~et~~vk~~~~~~~cdVl~p~W 703 (881)
T KOG0966|consen 631 SNIFDGLEFCVLSGTSETHTKAKLEEIIVENGGKIVQNVGPS-------DTLCIATAGKETTRVKAQAIKRSCDVLKPAW 703 (881)
T ss_pred hhhhcCeeEEEecCCcccccHHHHHHHHHHcCCEEEEcCCCC-------CcceEEeccccchHHHHHHHhccCceeeHHH
Confidence 5699999999987654 347899999999999999875432 1134555555666667777888999999999
Q ss_pred HHHHHhccc-cccccccccc
Q 002369 904 LLNGMVTQK-LEYERYYMFI 922 (930)
Q Consensus 904 ILdSIL~Qk-Le~E~y~Lf~ 922 (930)
|++|+..|+ +.|..+++|+
T Consensus 704 lldcc~~~~l~p~~P~~~fh 723 (881)
T KOG0966|consen 704 LLDCCKKQRLLPWLPRDLFH 723 (881)
T ss_pred HHHHHhhhhccccccHHHHh
Confidence 999999999 6788888875
No 19
>PF12738 PTCB-BRCT: twin BRCT domain; PDB: 3PA6_A 3KTF_C 2WT8_C 3EF1_A 3EF0_A.
Probab=96.21 E-value=0.0076 Score=51.07 Aligned_cols=62 Identities=13% Similarity=0.165 Sum_probs=46.2
Q ss_pred eEEEeCCCCCCHHHHHHHHHhCCcEEEeccCcccccCCCCCCcEEEEecCCchhccHHHHhcCCeEEeHHH
Q 002369 833 RVLITPNIKPSKETISSLIKSVHGQAVERLGRSALKDDKLPDDLLILSCEEDYEICEPFLEKGAAVYSSEL 903 (930)
Q Consensus 833 rfyItp~vkPske~L~~LIeagGGkVV~~~prs~lKd~~~pd~~IVISceeD~~~~~~ll~~Gi~VVSsEW 903 (930)
.|++++...+.+..|..+|+..||.+...... ...++|.....-..+....+.|++||+++|
T Consensus 2 ~i~~sg~~~~~~~~l~~~i~~~Gg~~~~~lt~---------~~THLI~~~~~~~K~~~A~~~gi~vV~~~W 63 (63)
T PF12738_consen 2 VICFSGFSGKERSQLRKLIEALGGKYSKDLTK---------KTTHLICSSPEGKKYRKAKEWGIPVVSPDW 63 (63)
T ss_dssp EEEEEEB-TTTCCHHHHHHHCTT-EEESSSST---------T-SEEEEES--HHHHHHHHHCTSEEEEHHH
T ss_pred EEEECCCCHHHHHHHHHHHHHCCCEEeccccC---------CceEEEEeCCCcHHHHHHHHCCCcEECCCC
Confidence 67888877777899999999999999887632 234676655566677777889999999999
No 20
>PRK06195 DNA polymerase III subunit epsilon; Validated
Probab=96.13 E-value=0.015 Score=64.39 Aligned_cols=74 Identities=19% Similarity=0.163 Sum_probs=59.3
Q ss_pred cCCCeEEEEcCCCCHHHHHHHHHHHHHcCCEEeccCC-CceEEEeCCC--------CCcHHHHHHHHC-----CCCEecH
Q 002369 718 DMASIQVLFSHHLDEDIIKQQKKILDRLGASEVSSIT-DATHFVTDIF--------VRTRNMLEAIAS-----GKPVVTH 783 (930)
Q Consensus 718 ~ms~vrVlFSG~~dee~~k~LKkiIkkLGG~Vaddis-k~THLVa~k~--------~RT~KfL~AIA~-----GkpIVSp 783 (930)
.+.+.+|+|||-...-.+++++++++.+||.|+++++ ++|+||++.. .-+-|+-.|... |++|++.
T Consensus 220 ~l~g~~~vfTG~l~~~~R~~~~~~~~~~Gg~v~~sVs~~t~~lV~G~~~~~~~~~~~~~~K~~kA~~l~~~g~~i~ii~E 299 (309)
T PRK06195 220 AFKEEVVVFTGGLASMTRDEAMILVRRLGGTVGSSVTKKTTYLVTNTKDIEDLNREEMSNKLKKAIDLKKKGQNIKFLNE 299 (309)
T ss_pred cccCCEEEEccccCCCCHHHHHHHHHHhCCEecCCcccCceEEEECCCcchhhcccCcChHHHHHHHHHhCCCCcEEecH
Confidence 3789999999977544467789999999999999998 7889999842 236799999887 9999998
Q ss_pred HHHHHHHH
Q 002369 784 LWLESIAQ 791 (930)
Q Consensus 784 ~WL~eClk 791 (930)
+=+.+-++
T Consensus 300 ~~f~~l~~ 307 (309)
T PRK06195 300 EEFLQKCK 307 (309)
T ss_pred HHHHHHHh
Confidence 75555443
No 21
>KOG0323 consensus TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=96.00 E-value=0.0023 Score=76.77 Aligned_cols=95 Identities=20% Similarity=0.251 Sum_probs=76.8
Q ss_pred chhhhhccCCCeEEEEcCCCCHH---HHHHHHHHHHHcCCEEeccCC-CceEEEeCCCCCcHHHHHHHHCC-CCEecHHH
Q 002369 711 KDLRKRRDMASIQVLFSHHLDED---IIKQQKKILDRLGASEVSSIT-DATHFVTDIFVRTRNMLEAIASG-KPVVTHLW 785 (930)
Q Consensus 711 Kdsr~rk~ms~vrVlFSG~~dee---~~k~LKkiIkkLGG~Vaddis-k~THLVa~k~~RT~KfL~AIA~G-kpIVSp~W 785 (930)
....+++.+.+..++|||+.+.- .......+...+|..++.++. ++||+|+-++ +|.|...|...+ ++||.+.|
T Consensus 434 i~~~~~~v~~~~~~vfSg~~P~~~~~~~s~~~~~~~~~g~vs~~~~~~~~th~i~~~~-gt~k~~~a~~~~~~~Vv~~~w 512 (635)
T KOG0323|consen 434 IPELRTKVLKGSQIVFSGLHPTGSTDESADILGVAQQLGAVSAPDVSDKTTHLIAANA-GTKKVYKAVVSGSAKVVNAAW 512 (635)
T ss_pred hhhhhhHHhhccceeecccccCcCCcchhhhhhhhhcccceecccccchhhhHHhhcc-CcceeeccccccceeEechhH
Confidence 34456678899999999965321 112234467788988888887 8999999988 599999999888 99999999
Q ss_pred HHHHHHhCCCCCCcCcccCCc
Q 002369 786 LESIAQVKIHIDEESYLLRDT 806 (930)
Q Consensus 786 L~eClkagk~VDEe~YeL~D~ 806 (930)
|+.|++....++|..|.+.+.
T Consensus 513 l~~~~e~w~~v~ek~~~l~~~ 533 (635)
T KOG0323|consen 513 LWRSLEKWGKVEEKLEPLDDD 533 (635)
T ss_pred HHHHHHHhcchhccccccccc
Confidence 999999999999999988764
No 22
>PRK06063 DNA polymerase III subunit epsilon; Provisional
Probab=95.96 E-value=0.019 Score=63.82 Aligned_cols=72 Identities=14% Similarity=0.140 Sum_probs=60.2
Q ss_pred CCCeEEEEcCCCCHHHHHHHHHHHHHcCCEEeccCC-CceEEEeCC-CCCcHHHHHHHHCCCCEecHHHHHHHHH
Q 002369 719 MASIQVLFSHHLDEDIIKQQKKILDRLGASEVSSIT-DATHFVTDI-FVRTRNMLEAIASGKPVVTHLWLESIAQ 791 (930)
Q Consensus 719 ms~vrVlFSG~~dee~~k~LKkiIkkLGG~Vaddis-k~THLVa~k-~~RT~KfL~AIA~GkpIVSp~WL~eClk 791 (930)
+.+..|+|||-... .+.+++++++.+||.|.++++ +++.||++. ...+-|.-.|-..|+||++.+=+.+-+.
T Consensus 233 ~~g~~~v~TG~l~~-~R~e~~~~~~~~G~~v~~sVs~~t~~lv~g~~~~~ssK~~kA~~~gi~ii~e~~f~~ll~ 306 (313)
T PRK06063 233 VQGMRVALSAEVSR-THEELVERILHAGLAYSDSVDRDTSLVVCNDPAPEQGKGYHARQLGVPVLDEAAFLELLR 306 (313)
T ss_pred cCCCEEEEecCCCC-CHHHHHHHHHHcCCEecCccccCccEEEECCCCCcccHHHHHHHcCCccccHHHHHHHHH
Confidence 56899999997753 457789999999999999998 789999986 3335799999999999999987776553
No 23
>PRK07956 ligA NAD-dependent DNA ligase LigA; Validated
Probab=95.93 E-value=0.021 Score=69.53 Aligned_cols=73 Identities=18% Similarity=0.175 Sum_probs=62.4
Q ss_pred CCCeEEEEcCCCCHHHHHHHHHHHHHcCCEEeccCC-CceEEEeCCCCCcHHHHHHHHCCCCEecHHHHHHHHHh
Q 002369 719 MASIQVLFSHHLDEDIIKQQKKILDRLGASEVSSIT-DATHFVTDIFVRTRNMLEAIASGKPVVTHLWLESIAQV 792 (930)
Q Consensus 719 ms~vrVlFSG~~dee~~k~LKkiIkkLGG~Vaddis-k~THLVa~k~~RT~KfL~AIA~GkpIVSp~WL~eClka 792 (930)
+.+..|||||....-.+..++.+++.+||.|+++++ +++.||++.-. +-|+-.|...|++|++.+.+.+.+.+
T Consensus 591 ~~g~~~v~TG~l~~~~R~e~~~~i~~~G~~v~~sVs~kt~~lv~G~~~-gsK~~kA~~lgI~ii~E~~f~~~l~~ 664 (665)
T PRK07956 591 LAGKTVVLTGTLEQLSRDEAKEKLEALGAKVSGSVSKKTDLVVAGEAA-GSKLAKAQELGIEVLDEEEFLRLLGE 664 (665)
T ss_pred ccccEEEEeCCCCCCCHHHHHHHHHHcCCEEeCcccCCCCEEEECCCC-ChHHHHHHHcCCeEEcHHHHHHHHhc
Confidence 889999999987543356789999999999999998 68889998643 57999999999999999998887654
No 24
>PRK14351 ligA NAD-dependent DNA ligase LigA; Provisional
Probab=95.85 E-value=0.024 Score=69.28 Aligned_cols=75 Identities=12% Similarity=0.184 Sum_probs=63.7
Q ss_pred cCCCeEEEEcCCCCHHHHHHHHHHHHHcCCEEeccCC-CceEEEeCCCCCcHHHHHHHHCCCCEecHHHHHHHHHh
Q 002369 718 DMASIQVLFSHHLDEDIIKQQKKILDRLGASEVSSIT-DATHFVTDIFVRTRNMLEAIASGKPVVTHLWLESIAQV 792 (930)
Q Consensus 718 ~ms~vrVlFSG~~dee~~k~LKkiIkkLGG~Vaddis-k~THLVa~k~~RT~KfL~AIA~GkpIVSp~WL~eClka 792 (930)
.+.+..|||||....-.+.+++++|+.+||.|+++++ +++.||++.-.-.-|+-.|-..|++|++.+.+.+-++.
T Consensus 609 ~l~g~~~v~TG~l~~~~R~~~~~~i~~~Gg~v~~sVs~kt~~Lv~G~~~g~sKl~kA~~lgi~ii~E~~f~~ll~~ 684 (689)
T PRK14351 609 ALDGLTFVFTGSLSGYTRSEAQELVEAHGGNATGSVSGNTDYLVVGENPGQSKRDDAEANDVPTLDEEEFEELLAE 684 (689)
T ss_pred CCCCcEEEEccCCCCCCHHHHHHHHHHcCCEEcCCcCCCccEEEEcCCCChhHHHHHHHCCCeEecHHHHHHHHHh
Confidence 3889999999987543467789999999999999998 78899998754346999999999999999988887665
No 25
>PLN03122 Poly [ADP-ribose] polymerase; Provisional
Probab=95.85 E-value=0.025 Score=70.11 Aligned_cols=88 Identities=13% Similarity=0.172 Sum_probs=66.2
Q ss_pred CCCCCCCceEEEeCCCCCCHHHHHHHHHhCCcEEEeccCcccccCCCCCCcEEEEecCCch-----hccHHHHhcCCeEE
Q 002369 825 KHPLLKDQRVLITPNIKPSKETISSLIKSVHGQAVERLGRSALKDDKLPDDLLILSCEEDY-----EICEPFLEKGAAVY 899 (930)
Q Consensus 825 k~~LFkG~rfyItp~vkPske~L~~LIeagGGkVV~~~prs~lKd~~~pd~~IVISceeD~-----~~~~~ll~~Gi~VV 899 (930)
..+.|.|+.|.|++....++++++.+|+..||+|....... ..+|+++ ++. ..+....+.|++||
T Consensus 186 ~~kpL~G~~fviTGtl~~sr~elK~~Ie~~GGkvsssVs~~---------T~lIvt~-~ev~k~gsSKlkkAk~lgIpIV 255 (815)
T PLN03122 186 PGKPFSGMMISLSGRLSRTHQYWKKDIEKHGGKVANSVEGV---------TCLVVSP-AERERGGSSKIAEAMERGIPVV 255 (815)
T ss_pred cCCCcCCcEEEEeCCCCCCHHHHHHHHHHcCCEEccccccc---------eEEEEcC-ccccccCccHHHHHHHcCCcCc
Confidence 45679999999999876689999999999999998865221 2344444 331 23566677899999
Q ss_pred eHHHHHHHHhccc-cccccccccc
Q 002369 900 SSELLLNGMVTQK-LEYERYYMFI 922 (930)
Q Consensus 900 SsEWILdSIL~Qk-Le~E~y~Lf~ 922 (930)
+.+||++++-.++ +++..|.+..
T Consensus 256 sEd~L~d~i~~~k~~~~~~y~l~~ 279 (815)
T PLN03122 256 REAWLIDSIEKQEAQPLEAYDVVS 279 (815)
T ss_pred cHHHHHHHHhcCCcccchhhhhcc
Confidence 9999999999864 5666777643
No 26
>PRK14350 ligA NAD-dependent DNA ligase LigA; Provisional
Probab=95.47 E-value=0.031 Score=68.12 Aligned_cols=71 Identities=10% Similarity=0.019 Sum_probs=60.2
Q ss_pred CCCeEEEEcCCCCHHHHHHHHHHHHHcCCEEeccCC-CceEEEeCCCCCcHHHHHHHHCCCCEecHHHHHHHH
Q 002369 719 MASIQVLFSHHLDEDIIKQQKKILDRLGASEVSSIT-DATHFVTDIFVRTRNMLEAIASGKPVVTHLWLESIA 790 (930)
Q Consensus 719 ms~vrVlFSG~~dee~~k~LKkiIkkLGG~Vaddis-k~THLVa~k~~RT~KfL~AIA~GkpIVSp~WL~eCl 790 (930)
+.+..|+|||-.....+..++++|+.+||.|+++++ ++++||++.-. +-|+-.|-..|+||++.+.+.+-+
T Consensus 594 l~gktfV~TG~l~~~~R~e~~~lie~~Ggkv~ssVSkktd~LV~G~~a-GsKl~KA~~LGI~Ii~e~~f~~~l 665 (669)
T PRK14350 594 LFGKKFCITGSFNGYSRSVLIDKLTKKGAIFNTCVTKYLDFLLVGEKA-GLKLKKANNLGIKIMSLFDIKSYV 665 (669)
T ss_pred cCCcEEEEecccCCCCHHHHHHHHHHcCCEEeccccCCCcEEEECCCC-CchHHHHHHcCCEEecHHHHHHHh
Confidence 789999999966443467789999999999999998 78899998643 469999999999999999887744
No 27
>TIGR00575 dnlj DNA ligase, NAD-dependent. The member of this family from Treponema pallidum differs in having three rather than just one copy of the BRCT (BRCA1 C Terminus) domain (pfam00533) at the C-terminus. It is included in the seed.
Probab=95.25 E-value=0.032 Score=67.87 Aligned_cols=67 Identities=16% Similarity=0.249 Sum_probs=56.3
Q ss_pred cCCCeEEEEcCCCCHHHHHHHHHHHHHcCCEEeccCC-CceEEEeCCCCCcHHHHHHHHCCCCEecHHH
Q 002369 718 DMASIQVLFSHHLDEDIIKQQKKILDRLGASEVSSIT-DATHFVTDIFVRTRNMLEAIASGKPVVTHLW 785 (930)
Q Consensus 718 ~ms~vrVlFSG~~dee~~k~LKkiIkkLGG~Vaddis-k~THLVa~k~~RT~KfL~AIA~GkpIVSp~W 785 (930)
.+.+..|||||....-.+.+++++++.+||.|.++++ ++++||++.-. +-|+-.|...|++|++.+.
T Consensus 584 ~l~gk~~v~TG~l~~~~R~~~~~~i~~~G~~v~~sVs~kt~~lv~G~~~-gsKl~kA~~lgi~ii~E~~ 651 (652)
T TIGR00575 584 PLAGKTFVLTGTLSQMSRDEAKELLENLGGKVASSVSKKTDYVIAGEKA-GSKLAKAQELGIPIINEEE 651 (652)
T ss_pred CccCcEEEEeccCCCCCHHHHHHHHHHcCCEEeCCcCCCccEEEECCCC-ChHHHHHHHcCCcEechhh
Confidence 3788999999977543456789999999999999998 78899998643 3499999999999999764
No 28
>COG0272 Lig NAD-dependent DNA ligase (contains BRCT domain type II) [DNA replication, recombination, and repair]
Probab=95.17 E-value=0.066 Score=64.81 Aligned_cols=73 Identities=15% Similarity=0.184 Sum_probs=61.1
Q ss_pred ccCCCeEEEEcCCCCHHHHHHHHHHHHHcCCEEeccCC-CceEEEeCCCCCcHHHHHHHHCCCCEecHHHHHHHH
Q 002369 717 RDMASIQVLFSHHLDEDIIKQQKKILDRLGASEVSSIT-DATHFVTDIFVRTRNMLEAIASGKPVVTHLWLESIA 790 (930)
Q Consensus 717 k~ms~vrVlFSG~~dee~~k~LKkiIkkLGG~Vaddis-k~THLVa~k~~RT~KfL~AIA~GkpIVSp~WL~eCl 790 (930)
..+.+-.|+|||.++.-.+.+.+.+|+.|||+|+.+++ +++.||++.-. +-|+-.|...|++|++.+++.+-+
T Consensus 593 ~~l~gkt~V~TGtL~~~sR~eak~~le~lGakv~~SVSkktD~vvaG~~a-GSKl~kA~eLgv~i~~E~~~~~ll 666 (667)
T COG0272 593 SPLAGKTFVLTGTLEGMSRDEAKALLEALGAKVSGSVSKKTDYVVAGENA-GSKLAKAQELGVKIIDEEEFLALL 666 (667)
T ss_pred cccCCCEEEEeccCCCCCHHHHHHHHHHcCCEEeceecccccEEEEcCCC-ChHHHHHHHcCCeEecHHHHHHhh
Confidence 45889999999987654566789999999999999998 57778888654 449999999999999999987643
No 29
>KOG3226 consensus DNA repair protein [Replication, recombination and repair]
Probab=94.45 E-value=0.056 Score=61.26 Aligned_cols=89 Identities=13% Similarity=0.156 Sum_probs=68.6
Q ss_pred CCCCCCceEEEeCCCCCCHHHHHHHHHhCCcEEEeccCcccccCCCCCCcEEEEecCCchhccHHHHhcCCeEEeHHHHH
Q 002369 826 HPLLKDQRVLITPNIKPSKETISSLIKSVHGQAVERLGRSALKDDKLPDDLLILSCEEDYEICEPFLEKGAAVYSSELLL 905 (930)
Q Consensus 826 ~~LFkG~rfyItp~vkPske~L~~LIeagGGkVV~~~prs~lKd~~~pd~~IVISceeD~~~~~~ll~~Gi~VVSsEWIL 905 (930)
.+|++|..|.|+++..|.+.+|+.-.-..|+++-....+ +..++|-.-.....+.....+|..||+.|||+
T Consensus 315 ~klL~GVV~VlSGfqNP~Rs~LRskAl~LGAkY~pDW~~---------gsThLICAF~NTPKy~QV~g~Gg~IV~keWI~ 385 (508)
T KOG3226|consen 315 SKLLEGVVFVLSGFQNPERSTLRSKALTLGAKYQPDWNA---------GSTHLICAFPNTPKYRQVEGNGGTIVSKEWIT 385 (508)
T ss_pred HHhhhceEEEEecccCchHHHHHHHHHhhcccccCCcCC---------CceeEEEecCCCcchhhcccCCceEeeHHHHH
Confidence 369999999999999999999999999999987554322 23455533344455566677899999999999
Q ss_pred HHHhc-ccccccccccccc
Q 002369 906 NGMVT-QKLEYERYYMFIV 923 (930)
Q Consensus 906 dSIL~-QkLe~E~y~Lf~d 923 (930)
+|.-+ ..|.+.+|++...
T Consensus 386 ~Cy~~kk~lp~rrYlm~~~ 404 (508)
T KOG3226|consen 386 ECYAQKKLLPIRRYLMHAG 404 (508)
T ss_pred HHHHHHhhccHHHHHhcCC
Confidence 99876 4478999988754
No 30
>PRK06063 DNA polymerase III subunit epsilon; Provisional
Probab=94.23 E-value=0.13 Score=57.32 Aligned_cols=74 Identities=15% Similarity=0.207 Sum_probs=58.0
Q ss_pred CCCCCCceEEEeCCCCCCHHHHHHHHHhCCcEEEeccCcccccCCCCCCcEEEEecCCch--hccHHHHhcCCeEEeHHH
Q 002369 826 HPLLKDQRVLITPNIKPSKETISSLIKSVHGQAVERLGRSALKDDKLPDDLLILSCEEDY--EICEPFLEKGAAVYSSEL 903 (930)
Q Consensus 826 ~~LFkG~rfyItp~vkPske~L~~LIeagGGkVV~~~prs~lKd~~~pd~~IVISceeD~--~~~~~ll~~Gi~VVSsEW 903 (930)
.+||.|++|.||+....++++++++|+..||+|.....+.+ + +||.++.+- .......+.|++|++.+-
T Consensus 230 ~~l~~g~~~v~TG~l~~~R~e~~~~~~~~G~~v~~sVs~~t--------~-~lv~g~~~~~ssK~~kA~~~gi~ii~e~~ 300 (313)
T PRK06063 230 RPLVQGMRVALSAEVSRTHEELVERILHAGLAYSDSVDRDT--------S-LVVCNDPAPEQGKGYHARQLGVPVLDEAA 300 (313)
T ss_pred CcccCCCEEEEecCCCCCHHHHHHHHHHcCCEecCccccCc--------c-EEEECCCCCcccHHHHHHHcCCccccHHH
Confidence 46899999999998877899999999999999987754321 2 555555443 455666778999999999
Q ss_pred HHHHH
Q 002369 904 LLNGM 908 (930)
Q Consensus 904 ILdSI 908 (930)
|++-+
T Consensus 301 f~~ll 305 (313)
T PRK06063 301 FLELL 305 (313)
T ss_pred HHHHH
Confidence 98854
No 31
>PLN03123 poly [ADP-ribose] polymerase; Provisional
Probab=93.79 E-value=0.15 Score=64.59 Aligned_cols=87 Identities=15% Similarity=0.243 Sum_probs=64.9
Q ss_pred cCCCCCCCceEEEeCCCCCCHHHHHHHHHhCCcEEEeccCcccccCCCCCCcEEEEecCCch----hccHHHHhcCCeEE
Q 002369 824 RKHPLLKDQRVLITPNIKPSKETISSLIKSVHGQAVERLGRSALKDDKLPDDLLILSCEEDY----EICEPFLEKGAAVY 899 (930)
Q Consensus 824 rk~~LFkG~rfyItp~vkPske~L~~LIeagGGkVV~~~prs~lKd~~~pd~~IVISceeD~----~~~~~ll~~Gi~VV 899 (930)
+..+.|.|+.|.+.+........++.+|+.+||++...... +..+||+.+ +. ..+......|++||
T Consensus 389 ~~~~~l~~~~i~i~G~~~~~~~~~k~~Ie~~GG~~s~~v~~---------~~t~l~tt~-e~~k~~~kv~qAk~~~ipIV 458 (981)
T PLN03123 389 SESEFLGDLKVSIVGASKEKVTEWKAKIEEAGGVFHATVKK---------DTNCLVVCG-ELDDEDAEMRKARRMKIPIV 458 (981)
T ss_pred ccCCCcCCeEEEEecCCCCcHHHHHHHHHhcCCEEeeeccC---------CceEEEccH-HhhhcchHHHHHHhcCCCcc
Confidence 45689999999999987666799999999999999876421 224566654 32 22345556799999
Q ss_pred eHHHHHHHHhcc-ccccccccc
Q 002369 900 SSELLLNGMVTQ-KLEYERYYM 920 (930)
Q Consensus 900 SsEWILdSIL~Q-kLe~E~y~L 920 (930)
+.+||.+++... .+.++.|.+
T Consensus 459 sedwL~ds~~~~~~~p~~~y~~ 480 (981)
T PLN03123 459 REDYLVDCFKKKKKLPFDKYKL 480 (981)
T ss_pred cHHHHHHHHhccccCcchhhhh
Confidence 999999999875 456666655
No 32
>COG5163 NOP7 Protein required for biogenesis of the 60S ribosomal subunit [Translation, ribosomal structure and biogenesis]
Probab=92.72 E-value=0.1 Score=59.71 Aligned_cols=90 Identities=16% Similarity=0.272 Sum_probs=56.9
Q ss_pred CCCCCCceEEEeCCCCCCHHHHHHHHHhCCcEEEeccCcccccCCCCCCcEEEEecCCchhcc-HHHHh---cCCeEEeH
Q 002369 826 HPLLKDQRVLITPNIKPSKETISSLIKSVHGQAVERLGRSALKDDKLPDDLLILSCEEDYEIC-EPFLE---KGAAVYSS 901 (930)
Q Consensus 826 ~~LFkG~rfyItp~vkPske~L~~LIeagGGkVV~~~prs~lKd~~~pd~~IVISceeD~~~~-~~ll~---~Gi~VVSs 901 (930)
..||.|+.|||+..+. .+.|+-||.+|||.|+...-..........|. +|. +++| +|.+. .|...+-|
T Consensus 348 ~slFS~f~FyisreVp--~dsLefiilscGG~V~~~p~~~~i~~~~~vD~--~vt----h~i~drp~~~~kvegrtYiQP 419 (591)
T COG5163 348 KSLFSGFKFYISREVP--GDSLEFIILSCGGSVVGSPCEADIHVSEKVDE--KVT----HQIVDRPVMKNKVEGRTYIQP 419 (591)
T ss_pred hhhhhceEEEEecccc--chHHHHHHHHcCCcccCchhhccCCchhhccc--hhh----hhhccchhhhhhhcceeeech
Confidence 4799999999998763 68999999999999986521000000000010 111 1111 23332 36778999
Q ss_pred HHHHHHHhcccccccccccccc
Q 002369 902 ELLLNGMVTQKLEYERYYMFIV 923 (930)
Q Consensus 902 EWILdSIL~QkLe~E~y~Lf~d 923 (930)
.||++||-+..|..-..++...
T Consensus 420 Qw~fDsiNkG~l~~~~~Y~~G~ 441 (591)
T COG5163 420 QWLFDSINKGKLACVENYCVGK 441 (591)
T ss_pred HHHHhhhccccchhhhhccccc
Confidence 9999999998887655555443
No 33
>KOG2481 consensus Protein required for normal rRNA processing [RNA processing and modification]
Probab=92.33 E-value=0.12 Score=60.75 Aligned_cols=78 Identities=14% Similarity=0.292 Sum_probs=59.1
Q ss_pred CCCeEEEEcCCCCHHHHHHHHHHHHHcCCEEeccC---------CC--ceEEEeCCCCCcHHHHHHHHCCCCEecHHHHH
Q 002369 719 MASIQVLFSHHLDEDIIKQQKKILDRLGASEVSSI---------TD--ATHFVTDIFVRTRNMLEAIASGKPVVTHLWLE 787 (930)
Q Consensus 719 ms~vrVlFSG~~dee~~k~LKkiIkkLGG~Vaddi---------sk--~THLVa~k~~RT~KfL~AIA~GkpIVSp~WL~ 787 (930)
+.++.+.++.-.+. +.|.-+|..+||.|.-+. .+ .||=|++++.-+.+| .|.--|.|+||.
T Consensus 328 F~glkFfl~reVPr---esL~fiI~s~GG~V~wd~~~~g~~~~~~d~~ITH~IvDrP~~~~~v-----~gR~YvQPQWvf 399 (570)
T KOG2481|consen 328 FSGLKFFLNREVPR---ESLEFIIRSFGGKVSWDPLGIGATYDESDERITHQIVDRPGQQTSV-----IGRTYVQPQWVF 399 (570)
T ss_pred hhcceeeeeccCch---HHHHHHHHHcCCceecCccCCCCcccccccceeeeeecccCcccee-----eeeeeecchhhh
Confidence 66777777654433 457889999999997663 23 599999986544333 466779999999
Q ss_pred HHHHhCCCCCCcCcccC
Q 002369 788 SIAQVKIHIDEESYLLR 804 (930)
Q Consensus 788 eClkagk~VDEe~YeL~ 804 (930)
+|+.++.+++.+.|.+.
T Consensus 400 DsvNar~llpt~~Y~~G 416 (570)
T KOG2481|consen 400 DSVNARLLLPTEKYFPG 416 (570)
T ss_pred hhccchhhccHhhhCCC
Confidence 99999999999888654
No 34
>PRK06195 DNA polymerase III subunit epsilon; Validated
Probab=91.95 E-value=1.1 Score=49.78 Aligned_cols=156 Identities=13% Similarity=0.110 Sum_probs=84.0
Q ss_pred HHHHHHHcCCEEeccCCCceEEEeCCCCCcHHHHHHHHCCCCEecHHHHHHHHHhC-CCCCCcCcccCCchhhhhcCCCc
Q 002369 738 QKKILDRLGASEVSSITDATHFVTDIFVRTRNMLEAIASGKPVVTHLWLESIAQVK-IHIDEESYLLRDTKKEKEFGFSM 816 (930)
Q Consensus 738 LKkiIkkLGG~Vaddisk~THLVa~k~~RT~KfL~AIA~GkpIVSp~WL~eClkag-k~VDEe~YeL~D~e~Eke~GfsL 816 (930)
|..+...+|... . .|=-.....-|..++.+++.-.-+-+..+|.+.+.-. ..+....|.............+.
T Consensus 130 L~~L~~~~gi~~-----~-~H~Al~DA~ata~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (309)
T PRK06195 130 LNTVNNFLGYEF-----K-HHDALADAMACSNILLNISKELNSKDINEISKLLGVTLGYVNENGYKPSSRKGRILKRSNR 203 (309)
T ss_pred HHHHHHHcCCCC-----c-ccCCHHHHHHHHHHHHHHHHHhccCCHHHHHHHhCCccccccccCCCcccccccccccCCC
Confidence 445667777531 1 2322222334677777777665556666666655422 22333344322111110001010
Q ss_pred hHHhh-hc----cCCCCCCCceEEEeCCC-CCCHHHHHHHHHhCCcEEEeccCcccccCCCCCCcEEEEecCCch-----
Q 002369 817 PASLA-RA----RKHPLLKDQRVLITPNI-KPSKETISSLIKSVHGQAVERLGRSALKDDKLPDDLLILSCEEDY----- 885 (930)
Q Consensus 817 ~~SL~-rA----rk~~LFkG~rfyItp~v-kPske~L~~LIeagGGkVV~~~prs~lKd~~~pd~~IVISceeD~----- 885 (930)
...-. .+ .....|.|.+|+||+.. ..++++++.+|+..||+|....... .+++| .++.+.
T Consensus 204 ~~~~~~~~~~~~~~~~~l~g~~~vfTG~l~~~~R~~~~~~~~~~Gg~v~~sVs~~--------t~~lV-~G~~~~~~~~~ 274 (309)
T PRK06195 204 QAPRKKKKIIESFGFTAFKEEVVVFTGGLASMTRDEAMILVRRLGGTVGSSVTKK--------TTYLV-TNTKDIEDLNR 274 (309)
T ss_pred CCCcccccccccCCCccccCCEEEEccccCCCCHHHHHHHHHHhCCEecCCcccC--------ceEEE-ECCCcchhhcc
Confidence 00000 00 01347999999999987 4679999999999999998875432 13444 443321
Q ss_pred ----hccHHHHh-----cCCeEEeHHHHHHHH
Q 002369 886 ----EICEPFLE-----KGAAVYSSELLLNGM 908 (930)
Q Consensus 886 ----~~~~~ll~-----~Gi~VVSsEWILdSI 908 (930)
.......+ .+++|++.+-+++-|
T Consensus 275 ~~~~~K~~kA~~l~~~g~~i~ii~E~~f~~l~ 306 (309)
T PRK06195 275 EEMSNKLKKAIDLKKKGQNIKFLNEEEFLQKC 306 (309)
T ss_pred cCcChHHHHHHHHHhCCCCcEEecHHHHHHHH
Confidence 11222222 289999998888743
No 35
>KOG2481 consensus Protein required for normal rRNA processing [RNA processing and modification]
Probab=91.67 E-value=0.22 Score=58.69 Aligned_cols=86 Identities=13% Similarity=0.220 Sum_probs=51.6
Q ss_pred CCCCCCceEEEeCCCCCCHHHHHHHHHhCCcEEEecc-Cc-ccccCCCCCCcEEEEecCCchhccHHHHhcCCeEEeHHH
Q 002369 826 HPLLKDQRVLITPNIKPSKETISSLIKSVHGQAVERL-GR-SALKDDKLPDDLLILSCEEDYEICEPFLEKGAAVYSSEL 903 (930)
Q Consensus 826 ~~LFkG~rfyItp~vkPske~L~~LIeagGGkVV~~~-pr-s~lKd~~~pd~~IVISceeD~~~~~~ll~~Gi~VVSsEW 903 (930)
..||+|+.|||...+ +++.|.-||.++||.|.-.. .. .+.++....-.-.||--+..... -.|-..|-|.|
T Consensus 325 kslF~glkFfl~reV--PresL~fiI~s~GG~V~wd~~~~g~~~~~~d~~ITH~IvDrP~~~~~-----v~gR~YvQPQW 397 (570)
T KOG2481|consen 325 KSLFSGLKFFLNREV--PRESLEFIIRSFGGKVSWDPLGIGATYDESDERITHQIVDRPGQQTS-----VIGRTYVQPQW 397 (570)
T ss_pred HHHhhcceeeeeccC--chHHHHHHHHHcCCceecCccCCCCcccccccceeeeeecccCccce-----eeeeeeecchh
Confidence 579999999999876 48999999999999998652 11 11211100000122211111100 12556889999
Q ss_pred HHHHHhccccc-cccc
Q 002369 904 LLNGMVTQKLE-YERY 918 (930)
Q Consensus 904 ILdSIL~QkLe-~E~y 918 (930)
|+|||-.-.+- -+.|
T Consensus 398 vfDsvNar~llpt~~Y 413 (570)
T KOG2481|consen 398 VFDSVNARLLLPTEKY 413 (570)
T ss_pred hhhhccchhhccHhhh
Confidence 99998764443 3444
No 36
>PRK14350 ligA NAD-dependent DNA ligase LigA; Provisional
Probab=90.89 E-value=0.72 Score=56.67 Aligned_cols=71 Identities=13% Similarity=0.026 Sum_probs=54.0
Q ss_pred CCCCCceEEEeCCCC-CCHHHHHHHHHhCCcEEEeccCcccccCCCCCCcEEEEecCCchhccHHHHhcCCeEEeHHHHH
Q 002369 827 PLLKDQRVLITPNIK-PSKETISSLIKSVHGQAVERLGRSALKDDKLPDDLLILSCEEDYEICEPFLEKGAAVYSSELLL 905 (930)
Q Consensus 827 ~LFkG~rfyItp~vk-Pske~L~~LIeagGGkVV~~~prs~lKd~~~pd~~IVISceeD~~~~~~ll~~Gi~VVSsEWIL 905 (930)
..|.|++|+||+... .++++++++|+..||+|....... .+ ++|.+++--.......+.|++|++.+.++
T Consensus 592 ~~l~gktfV~TG~l~~~~R~e~~~lie~~Ggkv~ssVSkk--------td-~LV~G~~aGsKl~KA~~LGI~Ii~e~~f~ 662 (669)
T PRK14350 592 SFLFGKKFCITGSFNGYSRSVLIDKLTKKGAIFNTCVTKY--------LD-FLLVGEKAGLKLKKANNLGIKIMSLFDIK 662 (669)
T ss_pred CccCCcEEEEecccCCCCHHHHHHHHHHcCCEEeccccCC--------Cc-EEEECCCCCchHHHHHHcCCEEecHHHHH
Confidence 469999999999774 579999999999999999865432 13 44445432244566677899999999988
Q ss_pred H
Q 002369 906 N 906 (930)
Q Consensus 906 d 906 (930)
.
T Consensus 663 ~ 663 (669)
T PRK14350 663 S 663 (669)
T ss_pred H
Confidence 7
No 37
>COG5275 BRCT domain type II [General function prediction only]
Probab=90.42 E-value=1.2 Score=48.05 Aligned_cols=74 Identities=11% Similarity=0.069 Sum_probs=58.8
Q ss_pred cCCCeEEEEcCCCCHHHHHHHHHHHHHcCCEEeccCC-CceEEEeCCCCCcHHHHHHHHCCCCEecHHHHHHHHH
Q 002369 718 DMASIQVLFSHHLDEDIIKQQKKILDRLGASEVSSIT-DATHFVTDIFVRTRNMLEAIASGKPVVTHLWLESIAQ 791 (930)
Q Consensus 718 ~ms~vrVlFSG~~dee~~k~LKkiIkkLGG~Vaddis-k~THLVa~k~~RT~KfL~AIA~GkpIVSp~WL~eClk 791 (930)
.+.+..|+|||.+..-.+...+.+++.+||.|+..++ +.|.||.+.-.--.||-.+--.+|+++..+=+..-+.
T Consensus 156 cL~G~~fVfTG~l~TlsR~~a~~lvk~yGgrvT~~pSskTtflvlGdnaGP~K~ekiKqlkIkaidEegf~~LI~ 230 (276)
T COG5275 156 CLKGKVFVFTGDLKTLSRDDAKTLVKVYGGRVTAVPSSKTTFLVLGDNAGPSKMEKIKQLKIKAIDEEGFDSLIK 230 (276)
T ss_pred cccccEEEEecccccccchhHHHHHHHhCCeeecccccceeEEEecCCCChHHHHHHHHhCCccccHHHHHHHHh
Confidence 5779999999988644445567899999999999887 8889998875556677777789999988877665443
No 38
>COG5163 NOP7 Protein required for biogenesis of the 60S ribosomal subunit [Translation, ribosomal structure and biogenesis]
Probab=90.37 E-value=0.28 Score=56.35 Aligned_cols=78 Identities=21% Similarity=0.246 Sum_probs=57.7
Q ss_pred CCCeEEEEcCCCCHHHHHHHHHHHHHcCCEEeccC-----------C-CceEEEeCCCCCcHHHHHHHHCCCCEecHHHH
Q 002369 719 MASIQVLFSHHLDEDIIKQQKKILDRLGASEVSSI-----------T-DATHFVTDIFVRTRNMLEAIASGKPVVTHLWL 786 (930)
Q Consensus 719 ms~vrVlFSG~~dee~~k~LKkiIkkLGG~Vaddi-----------s-k~THLVa~k~~RT~KfL~AIA~GkpIVSp~WL 786 (930)
++++.+.+|.-.+-+ .|.-+|..+||.|..+. . .+||-|++++. |.--..|.--|.|+||
T Consensus 351 FS~f~FyisreVp~d---sLefiilscGG~V~~~p~~~~i~~~~~vD~~vth~i~drp~-----~~~kvegrtYiQPQw~ 422 (591)
T COG5163 351 FSGFKFYISREVPGD---SLEFIILSCGGSVVGSPCEADIHVSEKVDEKVTHQIVDRPV-----MKNKVEGRTYIQPQWL 422 (591)
T ss_pred hhceEEEEeccccch---HHHHHHHHcCCcccCchhhccCCchhhccchhhhhhccchh-----hhhhhcceeeechHHH
Confidence 556666666544443 46779999999986542 1 48999999764 2222468888999999
Q ss_pred HHHHHhCCCCCCcCcccC
Q 002369 787 ESIAQVKIHIDEESYLLR 804 (930)
Q Consensus 787 ~eClkagk~VDEe~YeL~ 804 (930)
.+|+..|.+...+.|.+.
T Consensus 423 fDsiNkG~l~~~~~Y~~G 440 (591)
T COG5163 423 FDSINKGKLACVENYCVG 440 (591)
T ss_pred Hhhhccccchhhhhcccc
Confidence 999999999988888654
No 39
>PRK07956 ligA NAD-dependent DNA ligase LigA; Validated
Probab=89.31 E-value=1.2 Score=54.82 Aligned_cols=72 Identities=17% Similarity=0.227 Sum_probs=54.5
Q ss_pred CCCCceEEEeCCCC-CCHHHHHHHHHhCCcEEEeccCcccccCCCCCCcEEEEecCCchhccHHHHhcCCeEEeHHHHHH
Q 002369 828 LLKDQRVLITPNIK-PSKETISSLIKSVHGQAVERLGRSALKDDKLPDDLLILSCEEDYEICEPFLEKGAAVYSSELLLN 906 (930)
Q Consensus 828 LFkG~rfyItp~vk-Pske~L~~LIeagGGkVV~~~prs~lKd~~~pd~~IVISceeD~~~~~~ll~~Gi~VVSsEWILd 906 (930)
.|.|++|+||+... .++++++++|+..||+|....... .+ ++|.++..-.......+.|++|++.+-|++
T Consensus 590 ~~~g~~~v~TG~l~~~~R~e~~~~i~~~G~~v~~sVs~k--------t~-~lv~G~~~gsK~~kA~~lgI~ii~E~~f~~ 660 (665)
T PRK07956 590 DLAGKTVVLTGTLEQLSRDEAKEKLEALGAKVSGSVSKK--------TD-LVVAGEAAGSKLAKAQELGIEVLDEEEFLR 660 (665)
T ss_pred CccccEEEEeCCCCCCCHHHHHHHHHHcCCEEeCcccCC--------CC-EEEECCCCChHHHHHHHcCCeEEcHHHHHH
Confidence 49999999999875 479999999999999998875432 13 444444333445566678999999999988
Q ss_pred HH
Q 002369 907 GM 908 (930)
Q Consensus 907 SI 908 (930)
-|
T Consensus 661 ~l 662 (665)
T PRK07956 661 LL 662 (665)
T ss_pred HH
Confidence 54
No 40
>PRK14351 ligA NAD-dependent DNA ligase LigA; Provisional
Probab=89.00 E-value=1.3 Score=54.65 Aligned_cols=74 Identities=12% Similarity=0.145 Sum_probs=55.4
Q ss_pred CCCCCceEEEeCCCC-CCHHHHHHHHHhCCcEEEeccCcccccCCCCCCcEEEEecCCch-hccHHHHhcCCeEEeHHHH
Q 002369 827 PLLKDQRVLITPNIK-PSKETISSLIKSVHGQAVERLGRSALKDDKLPDDLLILSCEEDY-EICEPFLEKGAAVYSSELL 904 (930)
Q Consensus 827 ~LFkG~rfyItp~vk-Pske~L~~LIeagGGkVV~~~prs~lKd~~~pd~~IVISceeD~-~~~~~ll~~Gi~VVSsEWI 904 (930)
..|.|++|+||+... .++++++.+|+..||+|....... .+++|+ ++..- .......+.|++|++.+-|
T Consensus 608 ~~l~g~~~v~TG~l~~~~R~~~~~~i~~~Gg~v~~sVs~k--------t~~Lv~-G~~~g~sKl~kA~~lgi~ii~E~~f 678 (689)
T PRK14351 608 DALDGLTFVFTGSLSGYTRSEAQELVEAHGGNATGSVSGN--------TDYLVV-GENPGQSKRDDAEANDVPTLDEEEF 678 (689)
T ss_pred CCCCCcEEEEccCCCCCCHHHHHHHHHHcCCEEcCCcCCC--------ccEEEE-cCCCChhHHHHHHHCCCeEecHHHH
Confidence 469999999999875 489999999999999998865432 134444 43322 3455666789999999999
Q ss_pred HHHHh
Q 002369 905 LNGMV 909 (930)
Q Consensus 905 LdSIL 909 (930)
++-|-
T Consensus 679 ~~ll~ 683 (689)
T PRK14351 679 EELLA 683 (689)
T ss_pred HHHHH
Confidence 88543
No 41
>COG0272 Lig NAD-dependent DNA ligase (contains BRCT domain type II) [DNA replication, recombination, and repair]
Probab=88.78 E-value=1.3 Score=54.04 Aligned_cols=72 Identities=14% Similarity=0.221 Sum_probs=57.3
Q ss_pred CCCCCceEEEeCCCC-CCHHHHHHHHHhCCcEEEeccCcccccCCCCCCcEEEEecCCchhccHHHHhcCCeEEeHHHHH
Q 002369 827 PLLKDQRVLITPNIK-PSKETISSLIKSVHGQAVERLGRSALKDDKLPDDLLILSCEEDYEICEPFLEKGAAVYSSELLL 905 (930)
Q Consensus 827 ~LFkG~rfyItp~vk-Pske~L~~LIeagGGkVV~~~prs~lKd~~~pd~~IVISceeD~~~~~~ll~~Gi~VVSsEWIL 905 (930)
.+|.|++|.+|+... -++++.+.+|++.||+|....... .+ +||++++-=..+....+.|++|.+.++++
T Consensus 593 ~~l~gkt~V~TGtL~~~sR~eak~~le~lGakv~~SVSkk--------tD-~vvaG~~aGSKl~kA~eLgv~i~~E~~~~ 663 (667)
T COG0272 593 SPLAGKTFVLTGTLEGMSRDEAKALLEALGAKVSGSVSKK--------TD-YVVAGENAGSKLAKAQELGVKIIDEEEFL 663 (667)
T ss_pred cccCCCEEEEeccCCCCCHHHHHHHHHHcCCEEeceeccc--------cc-EEEEcCCCChHHHHHHHcCCeEecHHHHH
Confidence 679999999999876 789999999999999998865332 12 66666544446677778999999999988
Q ss_pred HH
Q 002369 906 NG 907 (930)
Q Consensus 906 dS 907 (930)
.-
T Consensus 664 ~l 665 (667)
T COG0272 664 AL 665 (667)
T ss_pred Hh
Confidence 64
No 42
>KOG3524 consensus Predicted guanine nucleotide exchange factor (PEBBLE) [Signal transduction mechanisms]
Probab=86.24 E-value=0.39 Score=58.31 Aligned_cols=88 Identities=22% Similarity=0.210 Sum_probs=74.3
Q ss_pred ccCCCeEEEEcCCCCHHHHHHHHHHHHHcCCEEeccCCCceEEEeCCCCCcHHHHHHHHCCCCEecHHHHHHHHHhCCCC
Q 002369 717 RDMASIQVLFSHHLDEDIIKQQKKILDRLGASEVSSITDATHFVTDIFVRTRNMLEAIASGKPVVTHLWLESIAQVKIHI 796 (930)
Q Consensus 717 k~ms~vrVlFSG~~dee~~k~LKkiIkkLGG~Vaddisk~THLVa~k~~RT~KfL~AIA~GkpIVSp~WL~eClkagk~V 796 (930)
..+.+..++|=||.+++ ...+...++.-||..+.+...|||||.+.- ++.-.-.+......||..+|.+=+++.|+|.
T Consensus 209 ~~feg~~~~f~gF~~ee-~~~m~~sle~~gg~~a~~d~~cthvvv~e~-~~~~~p~~~s~~~~~vk~ewfw~siq~g~~a 286 (850)
T KOG3524|consen 209 GVFEGLSLFFHGFKQEE-IDDMLRSLENTGGKLAPSDTLCTHVVVNED-NDEVEPLAVSSNQVHVKKEWFWVSIQRGCCA 286 (850)
T ss_pred ccccCCeEeecCCcHHH-HHHHHHHHHhcCCcccCCCCCceeEeecCC-ccccccccccccceeecccceEEEEecchhc
Confidence 46788999999998776 456778888899999997789999999864 3445556777889999999999999999999
Q ss_pred CCcCcccCCc
Q 002369 797 DEESYLLRDT 806 (930)
Q Consensus 797 DEe~YeL~D~ 806 (930)
-|..|.+.+.
T Consensus 287 ~e~~yl~~~~ 296 (850)
T KOG3524|consen 287 IEDNYLLPTG 296 (850)
T ss_pred cccceecccc
Confidence 9999988765
No 43
>TIGR00575 dnlj DNA ligase, NAD-dependent. The member of this family from Treponema pallidum differs in having three rather than just one copy of the BRCT (BRCA1 C Terminus) domain (pfam00533) at the C-terminus. It is included in the seed.
Probab=83.61 E-value=2.4 Score=52.15 Aligned_cols=68 Identities=16% Similarity=0.252 Sum_probs=49.9
Q ss_pred CCCCCceEEEeCCCC-CCHHHHHHHHHhCCcEEEeccCcccccCCCCCCcEEEEecCCchhccHHHHhcCCeEEeHHH
Q 002369 827 PLLKDQRVLITPNIK-PSKETISSLIKSVHGQAVERLGRSALKDDKLPDDLLILSCEEDYEICEPFLEKGAAVYSSEL 903 (930)
Q Consensus 827 ~LFkG~rfyItp~vk-Pske~L~~LIeagGGkVV~~~prs~lKd~~~pd~~IVISceeD~~~~~~ll~~Gi~VVSsEW 903 (930)
..|.|++|+||+... .++++++.+|+..||+|....... .+++|+ +++.-..+....+.|++|++.+.
T Consensus 583 ~~l~gk~~v~TG~l~~~~R~~~~~~i~~~G~~v~~sVs~k--------t~~lv~-G~~~gsKl~kA~~lgi~ii~E~~ 651 (652)
T TIGR00575 583 SPLAGKTFVLTGTLSQMSRDEAKELLENLGGKVASSVSKK--------TDYVIA-GEKAGSKLAKAQELGIPIINEEE 651 (652)
T ss_pred CCccCcEEEEeccCCCCCHHHHHHHHHHcCCEEeCCcCCC--------ccEEEE-CCCCChHHHHHHHcCCcEechhh
Confidence 469999999999864 679999999999999998865432 134444 54333345556677999987653
No 44
>KOG3548 consensus DNA damage checkpoint protein RHP9/CRB2/53BP1 [Replication, recombination and repair]
Probab=79.87 E-value=2.7 Score=52.93 Aligned_cols=99 Identities=13% Similarity=0.135 Sum_probs=63.7
Q ss_pred CCCCCCCceEEEeCCCCCCHHHHHHHHHhCCcEEEeccCcccc----cC-------------CCCCCcEEEEecCCchhc
Q 002369 825 KHPLLKDQRVLITPNIKPSKETISSLIKSVHGQAVERLGRSAL----KD-------------DKLPDDLLILSCEEDYEI 887 (930)
Q Consensus 825 k~~LFkG~rfyItp~vkPske~L~~LIeagGGkVV~~~prs~l----Kd-------------~~~pd~~IVISceeD~~~ 887 (930)
.+-||.||.|.++.-+. +.+....-++.+||.|++.--.... +. ...--..++|+. ..+..
T Consensus 922 gkniFd~cvF~lTsa~~-sd~~~r~s~e~~gg~vle~gl~~~Fn~p~~g~~~~lr~Ln~~q~~ks~~qalLIsd-th~Rt 999 (1176)
T KOG3548|consen 922 GKNIFDGCVFMLTSANR-SDSASRPSMEKHGGLVLEKGLMNLFNTPFKGGGIVLRQLNSFQERKSNYQALLISD-THYRT 999 (1176)
T ss_pred CcchhcceeEEEecccc-chhhhhhhhhccCChhhhccccccccccccCCcchHHhhhHHhhhccccceeEeeh-hhhHH
Confidence 35799999999997654 4566777777799988865211100 00 011123455543 22322
Q ss_pred c--HHHHhcCCeEEeHHHHHHHHhc-ccccccccccccccc
Q 002369 888 C--EPFLEKGAAVYSSELLLNGMVT-QKLEYERYYMFIVLF 925 (930)
Q Consensus 888 ~--~~ll~~Gi~VVSsEWILdSIL~-QkLe~E~y~Lf~d~v 925 (930)
. ...+..|+|||++.||-+|+=+ +-++|-.|+|-..+.
T Consensus 1000 ~KYLeaLA~giPcVh~~fI~aC~e~nr~Vdy~~YLLpsGyS 1040 (1176)
T KOG3548|consen 1000 HKYLEALARGIPCVHNTFIQACGEQNRCVDYTDYLLPSGYS 1040 (1176)
T ss_pred HHHHHHHHcCCCcccHHHHHHHHhccccccchhhcccCccc
Confidence 2 2234689999999999999986 457899999876654
No 45
>COG5275 BRCT domain type II [General function prediction only]
Probab=61.58 E-value=22 Score=38.68 Aligned_cols=75 Identities=16% Similarity=0.146 Sum_probs=56.4
Q ss_pred CCCCCceEEEeCCCC-CCHHHHHHHHHhCCcEEEeccCcccccCCCCCCcEEEEecCCchhccHHHHhcCCeEEeHHHHH
Q 002369 827 PLLKDQRVLITPNIK-PSKETISSLIKSVHGQAVERLGRSALKDDKLPDDLLILSCEEDYEICEPFLEKGAAVYSSELLL 905 (930)
Q Consensus 827 ~LFkG~rfyItp~vk-Pske~L~~LIeagGGkVV~~~prs~lKd~~~pd~~IVISceeD~~~~~~ll~~Gi~VVSsEWIL 905 (930)
..|.|+.|.|++... .+++.-+.||...||.|+..... ...++|+..+........+.+.+|+++..|-|.
T Consensus 155 ~cL~G~~fVfTG~l~TlsR~~a~~lvk~yGgrvT~~pSs--------kTtflvlGdnaGP~K~ekiKqlkIkaidEegf~ 226 (276)
T COG5275 155 ECLKGKVFVFTGDLKTLSRDDAKTLVKVYGGRVTAVPSS--------KTTFLVLGDNAGPSKMEKIKQLKIKAIDEEGFD 226 (276)
T ss_pred ccccccEEEEecccccccchhHHHHHHHhCCeeeccccc--------ceeEEEecCCCChHHHHHHHHhCCccccHHHHH
Confidence 478999999998865 67899999999999999875321 124556555555666667778899999998877
Q ss_pred HHHh
Q 002369 906 NGMV 909 (930)
Q Consensus 906 dSIL 909 (930)
.-|.
T Consensus 227 ~LI~ 230 (276)
T COG5275 227 SLIK 230 (276)
T ss_pred HHHh
Confidence 6553
No 46
>PRK05601 DNA polymerase III subunit epsilon; Validated
Probab=60.45 E-value=20 Score=41.68 Aligned_cols=72 Identities=14% Similarity=0.180 Sum_probs=54.8
Q ss_pred CCCeEEEEcCCCCHHHHHHHHHHHHHcCCEEeccCCC-ceEEEeCC-CCCcHHHHHHHHCCCCEecHHHHHHHHH
Q 002369 719 MASIQVLFSHHLDEDIIKQQKKILDRLGASEVSSITD-ATHFVTDI-FVRTRNMLEAIASGKPVVTHLWLESIAQ 791 (930)
Q Consensus 719 ms~vrVlFSG~~dee~~k~LKkiIkkLGG~Vaddisk-~THLVa~k-~~RT~KfL~AIA~GkpIVSp~WL~eClk 791 (930)
..+++|+||+-...+ ...+...+-..|..|++.++. ...|||+. ..-+-|.+.|-..|+|+|+..=+.+++.
T Consensus 295 v~Gm~v~~~~e~~~~-~d~li~~~~~agL~y~~~~~r~tslvv~n~~~~~~gk~~~a~~~gipl~~d~~fl~~~~ 368 (377)
T PRK05601 295 VAGMEVVVAPEITMD-PDIIIQAIVRAGLAYSEKLTRQTSVVVCNQTRDLDGKAMHAQRKGIPLLSDVAFLAAVE 368 (377)
T ss_pred ccCcEEEEeCCccCC-HHHHHHHHHHccchhhhccccceeEEEeCCCCCccchhhhhhhcCCCccCHHHHHHHHH
Confidence 458999999965333 234566677889999999984 55677775 4468899999999999999877666654
No 47
>KOG2093 consensus Translesion DNA polymerase - REV1 deoxycytidyl transferase [Replication, recombination and repair]
Probab=54.32 E-value=21 Score=45.23 Aligned_cols=127 Identities=11% Similarity=0.134 Sum_probs=82.9
Q ss_pred cchhhhhccCCCeEEEEcCCCCHHHHHHHHHHHHHcCCEEeccC--CCceEEEeCCCCCcHHHHHHHHCC---CCEecHH
Q 002369 710 LKDLRKRRDMASIQVLFSHHLDEDIIKQQKKILDRLGASEVSSI--TDATHFVTDIFVRTRNMLEAIASG---KPVVTHL 784 (930)
Q Consensus 710 ~Kdsr~rk~ms~vrVlFSG~~dee~~k~LKkiIkkLGG~Vaddi--sk~THLVa~k~~RT~KfL~AIA~G---kpIVSp~ 784 (930)
|.....+..++.+-++.-|..++. .++++......|+...... ...||+|+..+. .++..| --..+++
T Consensus 39 ~~~~t~~s~fs~is~~~ngs~~e~-~nelk~~~~~~t~~~~~~~~rs~T~~ii~~~l~------a~~vk~~~~~~~~~~e 111 (1016)
T KOG2093|consen 39 WDAATGSSSFSGISISVNGSTDES-ANELKLQNMFHTGASAASYERSGTENIIAQGLP------ADLVKGFTIPKHISIE 111 (1016)
T ss_pred ccCcCCcceeeeeeeccCCccccc-hHHHhhhhhhcccccccccccccceeeecccch------HHHhccccchhhhcHH
Confidence 445555566778888888877665 3668888888898877443 379999998642 122222 2367899
Q ss_pred HHHHHHHhCCCCCCcCcccCCc-hhhhhcCCCchHHhhhc-----cCCCCCCCceEEEeCCCCCC
Q 002369 785 WLESIAQVKIHIDEESYLLRDT-KKEKEFGFSMPASLARA-----RKHPLLKDQRVLITPNIKPS 843 (930)
Q Consensus 785 WL~eClkagk~VDEe~YeL~D~-e~Eke~GfsL~~SL~rA-----rk~~LFkG~rfyItp~vkPs 843 (930)
|+.+|.+.+..+...+|.+... ..++............- ...++|....|+|.+-..|.
T Consensus 112 ~iie~~~~~~~~~~~~~~~~t~~~h~q~~~~~~~~~~~~D~q~~~~~~ki~~~n~ikinG~~E~~ 176 (1016)
T KOG2093|consen 112 WIIECCENGMDVGYYPYQLYTGQSHEQAQLAFPVTSFPKDQQISSQSSKIFKNNVIKINGYNEPE 176 (1016)
T ss_pred HHHHHHhccCccccccceeeccchhcccccCCCcccCCccccccccchhccccceeeecCCCCcc
Confidence 9999999999999888887643 22222111111111111 12579999999999876543
No 48
>PF15101 DUF4557: Domain of unknown function (DUF4557)
Probab=34.63 E-value=1e+02 Score=33.48 Aligned_cols=78 Identities=14% Similarity=0.293 Sum_probs=56.3
Q ss_pred CCCceEEEeCCCCCCHHHHHHHHHhCCcEEEeccCcccccCCCCCCcEEEEecCCchh----c--cHHHHhcCCeEEeHH
Q 002369 829 LKDQRVLITPNIKPSKETISSLIKSVHGQAVERLGRSALKDDKLPDDLLILSCEEDYE----I--CEPFLEKGAAVYSSE 902 (930)
Q Consensus 829 FkG~rfyItp~vkPske~L~~LIeagGGkVV~~~prs~lKd~~~pd~~IVISceeD~~----~--~~~ll~~Gi~VVSsE 902 (930)
|+|.+-|++..+. ..+.++=.+.||.|+. ++. -=++.||+.+.. + -..|++.++.|+.+-
T Consensus 1 F~~q~aWFs~SVs---~~~~~~Wv~~GG~isd--~~~---------AdFLFS~DAshpDT~~iy~S~dY~~d~aTVFha~ 66 (212)
T PF15101_consen 1 FQGQRAWFSGSVS---QDLRQFWVKEGGTISD--WDA---------ADFLFSCDASHPDTARIYQSLDYIEDRATVFHAS 66 (212)
T ss_pred CCCceeeeecCcc---hHHHHHHHhcCCccCC--hhh---------cceeeecCCCCcchHhhhhhhhhhhcCeeeeeHH
Confidence 8999999998875 5788899999999876 221 127778765432 1 134678899999999
Q ss_pred HHHHHHhc---cccccccccc
Q 002369 903 LLLNGMVT---QKLEYERYYM 920 (930)
Q Consensus 903 WILdSIL~---QkLe~E~y~L 920 (930)
||..+.-. ..+.+.-|.|
T Consensus 67 yl~a~~na~s~~sV~LGhyVL 87 (212)
T PF15101_consen 67 YLSAVANAESKNSVALGHYVL 87 (212)
T ss_pred HHHHHhhhhhcCCccccceEe
Confidence 99887653 3456667776
No 49
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=26.19 E-value=2e+02 Score=33.98 Aligned_cols=63 Identities=14% Similarity=0.211 Sum_probs=42.5
Q ss_pred hccCCCCCCCceEEEeCCCCCCHHHHHHHHHhCCcEEEeccCcccccCCCCCCcEEEEecCCchhccHHHHhcCCeEE
Q 002369 822 RARKHPLLKDQRVLITPNIKPSKETISSLIKSVHGQAVERLGRSALKDDKLPDDLLILSCEEDYEICEPFLEKGAAVY 899 (930)
Q Consensus 822 rArk~~LFkG~rfyItp~vkPske~L~~LIeagGGkVV~~~prs~lKd~~~pd~~IVISceeD~~~~~~ll~~Gi~VV 899 (930)
+....++|+|.+|-++-...+....|...+.++|++|.-..-. | .|. +...+..+.+.|++||
T Consensus 23 ~~~~~~pl~G~~i~~~~hl~~~Ta~l~~~L~~~GA~v~~~~~n--------p-----~st--qd~vaaaL~~~gi~v~ 85 (406)
T TIGR00936 23 RFSEEKPLKGARIAACLHVTVETAVLIETLVAGGAEVAWTSCN--------P-----LST--QDDVAAALAKAGIPVF 85 (406)
T ss_pred HHhccCCCCCCEEEEEEechHHHHHHHHHHHHcCCEEEEEccC--------C-----ccc--cHHHHHHHHhCCceEE
Confidence 3345688999998777767777778889999999997643110 1 111 2234455667899999
No 50
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=24.86 E-value=76 Score=33.22 Aligned_cols=29 Identities=41% Similarity=0.410 Sum_probs=21.1
Q ss_pred CceEEEeCCC--CCcHHHHHHHHCCCCEecH
Q 002369 755 DATHFVTDIF--VRTRNMLEAIASGKPVVTH 783 (930)
Q Consensus 755 k~THLVa~k~--~RT~KfL~AIA~GkpIVSp 783 (930)
.+..+|.+.. .-..+++.|+++|+|||..
T Consensus 281 ~adv~v~ps~~e~~~~~~~Eama~G~PvI~~ 311 (375)
T cd03821 281 DADLFVLPSHSENFGIVVAEALACGTPVVTT 311 (375)
T ss_pred hCCEEEeccccCCCCcHHHHHHhcCCCEEEc
Confidence 3566666542 2367899999999999985
No 51
>PRK05601 DNA polymerase III subunit epsilon; Validated
Probab=23.94 E-value=1.9e+02 Score=34.04 Aligned_cols=74 Identities=19% Similarity=0.262 Sum_probs=54.0
Q ss_pred CCCCCCceEEEeCCCCCCHHHHHHHHHhCCcEEEeccCcccccCCCCCCcEEEEecCCch---hccHHHHhcCCeEEeHH
Q 002369 826 HPLLKDQRVLITPNIKPSKETISSLIKSVHGQAVERLGRSALKDDKLPDDLLILSCEEDY---EICEPFLEKGAAVYSSE 902 (930)
Q Consensus 826 ~~LFkG~rfyItp~vkPske~L~~LIeagGGkVV~~~prs~lKd~~~pd~~IVISceeD~---~~~~~ll~~Gi~VVSsE 902 (930)
.+|-+|++|-|++.+.-++++|.+-+-.+|=.+.+...+. ..+|| |.... .......++|+|+++-+
T Consensus 292 ~~lv~Gm~v~~~~e~~~~~d~li~~~~~agL~y~~~~~r~---------tslvv-~n~~~~~~gk~~~a~~~gipl~~d~ 361 (377)
T PRK05601 292 KGLVAGMEVVVAPEITMDPDIIIQAIVRAGLAYSEKLTRQ---------TSVVV-CNQTRDLDGKAMHAQRKGIPLLSDV 361 (377)
T ss_pred CccccCcEEEEeCCccCCHHHHHHHHHHccchhhhccccc---------eeEEE-eCCCCCccchhhhhhhcCCCccCHH
Confidence 4699999999999998888998888888887776655432 23444 54322 23345567899999999
Q ss_pred HHHHHHh
Q 002369 903 LLLNGMV 909 (930)
Q Consensus 903 WILdSIL 909 (930)
=||..+-
T Consensus 362 ~fl~~~~ 368 (377)
T PRK05601 362 AFLAAVE 368 (377)
T ss_pred HHHHHHH
Confidence 9988764
No 52
>KOG2043 consensus Signaling protein SWIFT and related BRCT domain proteins [Transcription; Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=23.51 E-value=47 Score=42.74 Aligned_cols=88 Identities=16% Similarity=0.061 Sum_probs=75.7
Q ss_pred cCccccccCCCCccchhhhhHHHHHHHhhCCccccccccCCCCcCCCCCCCccCCcchhhhhhhhccCCCCCCCcccccc
Q 002369 105 AGLSYVDSQEPGEFSEANALTFVEQFIEKNNFVDFDHEVDLGKSKGGKSKPVSTAKGPQSLAKKSNDRSKAGKTGIYDWD 184 (930)
Q Consensus 105 agLsYv~SqEPg~~SQanAl~~Vd~~i~~~~~~~~~qe~~~~k~~~~KS~~v~~~kg~~~LAkk~~~~~~~~k~~ifdW~ 184 (930)
.-|+.-+.+|++.-.++-++..+++|...- ........-+...++..+.++.+..+++.++|..+-.+++.++-+|+|.
T Consensus 251 ~~~~~~~f~~~~~~~~~~~~as~q~~~~~~-~~~~~~~~~~~~~s~~~~s~~~~~~~~~~~~k~~~~~s~~~k~~~~~~~ 329 (896)
T KOG2043|consen 251 SILDHQDFREGLPTAPELNRASSQAFYIQP-LPELLGRFAPPEASRKNSSPLSTPSTIGGVLKSAMKWSPNPKNAIFDLL 329 (896)
T ss_pred cchhhhhhhccCCCCchhhhhcccccccCC-CccccccCCCCcCCCCCccccccccccccccccccccCCCchhhhhhcc
Confidence 336777889999999999999999998887 6666666667788899999999999999999999999999999999999
Q ss_pred CCCCcCCCC
Q 002369 185 DSREDEGGG 193 (930)
Q Consensus 185 d~~ed~gg~ 193 (930)
-.+++.+.+
T Consensus 330 ~~~~~~~~~ 338 (896)
T KOG2043|consen 330 EPRLEACYM 338 (896)
T ss_pred cchhhhccC
Confidence 998855544
No 53
>PF05991 NYN_YacP: YacP-like NYN domain; InterPro: IPR010298 This family consists of several hypothetical bacterial proteins as well as some uncharacterised sequences from Arabidopsis thaliana. The function of this family is unknown.
Probab=20.42 E-value=3.3e+02 Score=28.02 Aligned_cols=66 Identities=21% Similarity=0.290 Sum_probs=42.6
Q ss_pred CCCCceEEEeCCCCCCHHHHHHHHHhCCcEEEeccCcccccCCCCCCcEEEEecCCchhccHHHHhcCCeEEeHHHHHHH
Q 002369 828 LLKDQRVLITPNIKPSKETISSLIKSVHGQAVERLGRSALKDDKLPDDLLILSCEEDYEICEPFLEKGAAVYSSELLLNG 907 (930)
Q Consensus 828 LFkG~rfyItp~vkPske~L~~LIeagGGkVV~~~prs~lKd~~~pd~~IVISceeD~~~~~~ll~~Gi~VVSsEWILdS 907 (930)
-+.|..|++++.-...-+.|+.+|...+. .+..++||++ |..........|+.++++++|+.-
T Consensus 64 ~~~gi~Vvft~~~~tAD~~Ie~~v~~~~~---------------~~~~v~VVTS--D~~iq~~~~~~GA~~iss~ef~~~ 126 (166)
T PF05991_consen 64 EYGGIEVVFTKEGETADDYIERLVRELKN---------------RPRQVTVVTS--DREIQRAARGRGAKRISSEEFLRE 126 (166)
T ss_pred eeCceEEEECCCCCCHHHHHHHHHHHhcc---------------CCCeEEEEeC--CHHHHHHHhhCCCEEEcHHHHHHH
Confidence 34677777776543334456666655432 1235778875 444444556789999999999998
Q ss_pred Hhc
Q 002369 908 MVT 910 (930)
Q Consensus 908 IL~ 910 (930)
|..
T Consensus 127 l~~ 129 (166)
T PF05991_consen 127 LKA 129 (166)
T ss_pred HHH
Confidence 764
No 54
>COG4446 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.10 E-value=79 Score=31.91 Aligned_cols=28 Identities=32% Similarity=0.557 Sum_probs=24.4
Q ss_pred CCeeeccCCcccccccchhhhhHHHHHH
Q 002369 238 DGITMRSDSRVTFNNIKKNEKKAEEAQL 265 (930)
Q Consensus 238 ~~~~~~sdsr~~~~~~k~~~k~~~~~~~ 265 (930)
+.++|+|.||++-+++..|.+|+++-..
T Consensus 107 ~vi~vRSaSRiG~SDlGVNRrR~EqiR~ 134 (141)
T COG4446 107 NVIWVRSASRIGYSDLGVNRRRAEQIRL 134 (141)
T ss_pred ceEEEeeccccccccccccHHHHHHHHH
Confidence 4588999999999999999999988543
No 55
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=20.07 E-value=1.6e+02 Score=31.32 Aligned_cols=19 Identities=32% Similarity=0.426 Sum_probs=16.8
Q ss_pred cHHHHHHHHCCCCEecHHH
Q 002369 767 TRNMLEAIASGKPVVTHLW 785 (930)
Q Consensus 767 T~KfL~AIA~GkpIVSp~W 785 (930)
..+++.|+++|+|||..++
T Consensus 275 ~~~~~Ea~a~G~Pvi~~~~ 293 (355)
T cd03799 275 PVVLMEAMAMGLPVISTDV 293 (355)
T ss_pred cHHHHHHHHcCCCEEecCC
Confidence 6899999999999998654
Done!