Query 002369
Match_columns 930
No_of_seqs 208 out of 733
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 23:33:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002369.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002369hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3sqd_A PAX-interacting protein 100.0 6.4E-40 2.2E-44 337.1 18.2 202 718-920 13-218 (219)
2 2etx_A Mediator of DNA damage 100.0 4.3E-39 1.5E-43 326.8 20.5 204 711-924 2-205 (209)
3 3l41_A BRCT-containing protein 100.0 2.2E-38 7.5E-43 326.8 10.2 201 718-923 5-216 (220)
4 3al2_A DNA topoisomerase 2-bin 100.0 6.8E-31 2.3E-35 272.9 15.2 200 719-923 7-231 (235)
5 1l0b_A BRCA1; TANDEM-BRCT, thr 100.0 1.9E-28 6.7E-33 248.8 20.5 203 716-923 2-215 (229)
6 3u3z_A Microcephalin; DNA repa 100.0 1.3E-28 4.5E-33 249.4 15.6 182 721-920 11-197 (199)
7 1t15_A Breast cancer type 1 su 99.9 2.5E-27 8.7E-32 237.2 18.7 194 720-921 3-211 (214)
8 2nte_A BARD-1, BRCA1-associate 99.9 4.3E-26 1.5E-30 230.2 17.1 185 720-914 1-206 (210)
9 1kzy_C Tumor suppressor P53-bi 99.9 2.9E-24 9.8E-29 225.8 18.7 201 718-923 15-254 (259)
10 3olc_X DNA topoisomerase 2-bin 99.9 2.3E-22 7.9E-27 215.5 18.9 208 685-922 77-286 (298)
11 2vxb_A DNA repair protein RHP9 99.8 1.3E-20 4.5E-25 196.3 17.5 184 719-913 3-238 (241)
12 3t7k_A RTT107, regulator of TY 99.8 1.4E-18 4.8E-23 182.0 13.5 190 720-918 21-246 (256)
13 3ii6_X DNA ligase 4; XRCC4, NH 99.6 1.8E-14 6.1E-19 151.8 17.6 192 717-920 9-263 (263)
14 3l3e_A DNA topoisomerase 2-bin 99.5 2E-14 6.7E-19 131.9 10.2 87 717-804 14-103 (107)
15 2d8m_A DNA-repair protein XRCC 99.5 9.5E-14 3.2E-18 131.9 10.1 88 717-806 21-109 (129)
16 3l46_A Protein ECT2; alternati 99.5 1.7E-14 5.9E-19 135.4 4.4 88 717-806 20-108 (112)
17 1z56_C DNA ligase IV; DNA repa 99.4 8.5E-15 2.9E-19 152.6 0.1 191 719-920 6-261 (264)
18 2cou_A ECT2 protein; BRCT doma 99.4 3.2E-14 1.1E-18 131.8 3.5 88 717-806 11-99 (109)
19 4id3_A DNA repair protein REV1 99.4 1.2E-12 4E-17 115.4 9.2 82 718-803 7-91 (92)
20 2ebw_A DNA repair protein REV1 99.3 2.5E-12 8.5E-17 115.3 7.8 83 717-803 11-95 (97)
21 1wf6_A Similar to S.pombe -RAD 99.3 1.9E-11 6.7E-16 116.4 10.7 88 718-806 40-129 (132)
22 3ef1_A RNA polymerase II subun 99.2 2.1E-11 7E-16 137.6 8.0 89 714-803 348-441 (442)
23 3ef0_A RNA polymerase II subun 99.2 2.9E-11 9.8E-16 133.8 9.1 88 715-803 279-371 (372)
24 3pa6_A Microcephalin; BRCT dom 99.2 4.2E-11 1.4E-15 111.5 8.4 88 718-806 7-98 (107)
25 3olc_X DNA topoisomerase 2-bin 99.2 6.1E-11 2.1E-15 127.3 10.6 89 716-806 197-287 (298)
26 3pc6_A DNA repair protein XRCC 99.0 9.2E-10 3.1E-14 102.3 10.0 86 719-805 8-96 (104)
27 2ebw_A DNA repair protein REV1 98.7 2E-08 6.8E-13 89.9 7.9 88 825-922 9-97 (97)
28 3huf_A DNA repair and telomere 98.7 4.9E-08 1.7E-12 106.0 12.4 175 720-910 114-303 (325)
29 4id3_A DNA repair protein REV1 98.7 3.9E-08 1.3E-12 86.4 9.2 86 826-920 5-91 (92)
30 2d8m_A DNA-repair protein XRCC 98.5 3.8E-07 1.3E-11 86.5 9.5 91 826-925 20-111 (129)
31 3l46_A Protein ECT2; alternati 98.5 1.1E-07 3.8E-12 89.3 5.6 88 826-922 19-106 (112)
32 2jw5_A DNA polymerase lambda; 98.4 5.3E-08 1.8E-12 90.3 2.3 67 738-804 32-104 (106)
33 3ii6_X DNA ligase 4; XRCC4, NH 98.4 7E-07 2.4E-11 94.1 9.9 85 718-803 164-263 (263)
34 1l7b_A DNA ligase; BRCT, autos 98.4 3.2E-07 1.1E-11 83.4 6.2 73 718-792 7-80 (92)
35 2k6g_A Replication factor C su 98.4 9.3E-07 3.2E-11 82.7 9.2 76 718-793 32-108 (109)
36 2ebu_A Replication factor C su 98.4 9.9E-07 3.4E-11 83.1 9.4 76 718-793 22-98 (112)
37 2ep8_A Pescadillo homolog 1; A 98.4 4.9E-07 1.7E-11 83.3 7.1 76 719-802 13-100 (100)
38 1z56_C DNA ligase IV; DNA repa 98.3 1.8E-07 6E-12 97.5 3.7 87 719-805 161-263 (264)
39 2cou_A ECT2 protein; BRCT doma 98.3 2.7E-07 9.4E-12 85.4 4.5 88 825-921 9-97 (109)
40 3l3e_A DNA topoisomerase 2-bin 98.3 1.8E-06 6.2E-11 79.0 8.2 89 825-922 12-104 (107)
41 2coe_A Deoxynucleotidyltransfe 98.2 7.3E-06 2.5E-10 78.1 11.3 82 719-802 21-112 (120)
42 3pc6_A DNA repair protein XRCC 98.1 1.3E-05 4.3E-10 74.6 9.2 85 827-921 6-95 (104)
43 3u3z_A Microcephalin; DNA repa 98.0 2.5E-06 8.5E-11 86.5 4.6 79 718-804 119-198 (199)
44 1kzy_C Tumor suppressor P53-bi 98.0 1.8E-05 6.1E-10 83.4 10.4 96 824-922 11-137 (259)
45 1wf6_A Similar to S.pombe -RAD 98.0 1.7E-05 5.9E-10 75.5 9.2 86 825-920 37-126 (132)
46 2cok_A Poly [ADP-ribose] polym 98.0 1.2E-05 4.2E-10 75.7 7.9 75 718-793 10-87 (113)
47 1l0b_A BRCA1; TANDEM-BRCT, thr 98.0 7.7E-06 2.6E-10 82.9 6.9 88 717-805 116-214 (229)
48 3pc7_A DNA ligase 3; DNA repai 98.0 8.5E-06 2.9E-10 73.9 6.2 69 719-798 17-87 (88)
49 2vxb_A DNA repair protein RHP9 98.0 2.2E-05 7.4E-10 82.0 9.8 96 828-923 2-119 (241)
50 1t15_A Breast cancer type 1 su 97.9 9.9E-06 3.4E-10 80.9 5.0 88 717-805 114-212 (214)
51 3pa6_A Microcephalin; BRCT dom 97.8 7.4E-05 2.5E-09 69.5 9.2 89 826-923 5-98 (107)
52 2etx_A Mediator of DNA damage 97.7 5.7E-05 2E-09 76.6 8.0 89 716-806 113-204 (209)
53 2ep8_A Pescadillo homolog 1; A 97.7 9.4E-05 3.2E-09 68.1 8.0 86 826-918 10-99 (100)
54 2dun_A POL MU, DNA polymerase 97.7 3.9E-05 1.3E-09 74.3 5.6 85 719-803 11-106 (133)
55 2nte_A BARD-1, BRCA1-associate 97.6 2.2E-05 7.6E-10 79.1 2.8 83 717-799 103-209 (210)
56 3pc7_A DNA ligase 3; DNA repai 97.6 0.0001 3.5E-09 66.9 6.4 72 826-914 14-85 (88)
57 2l42_A DNA-binding protein RAP 97.5 8.3E-05 2.8E-09 68.8 5.0 87 825-926 8-100 (106)
58 3ef0_A RNA polymerase II subun 97.4 0.00025 8.7E-09 78.6 9.0 87 826-921 280-372 (372)
59 1l7b_A DNA ligase; BRCT, autos 97.3 0.00036 1.2E-08 63.4 7.2 75 826-909 5-79 (92)
60 3ef1_A RNA polymerase II subun 97.3 0.00031 1.1E-08 79.7 8.1 87 826-921 350-442 (442)
61 2k6g_A Replication factor C su 97.1 0.002 6.9E-08 60.2 9.5 75 827-910 31-107 (109)
62 2ebu_A Replication factor C su 97.0 0.0021 7.3E-08 60.5 8.8 75 827-910 21-97 (112)
63 2cok_A Poly [ADP-ribose] polym 96.9 0.0019 6.4E-08 60.9 7.4 83 826-917 8-104 (113)
64 4gns_A Chitin biosynthesis pro 96.8 0.0026 8.9E-08 64.3 8.5 95 711-805 154-255 (290)
65 3al2_A DNA topoisomerase 2-bin 96.6 0.0033 1.1E-07 65.3 7.6 87 717-805 134-230 (235)
66 3sqd_A PAX-interacting protein 96.4 0.0032 1.1E-07 64.8 6.0 87 826-922 11-99 (219)
67 2coe_A Deoxynucleotidyltransfe 96.4 0.011 3.9E-07 56.3 8.9 87 826-921 18-114 (120)
68 2l42_A DNA-binding protein RAP 96.1 0.0025 8.6E-08 59.1 2.7 66 735-809 32-100 (106)
69 2jw5_A DNA polymerase lambda; 96.0 0.0054 1.8E-07 56.8 4.7 88 826-922 9-105 (106)
70 1dgs_A DNA ligase; AMP complex 96.0 0.0011 3.8E-08 78.6 0.0 74 718-793 587-661 (667)
71 2owo_A DNA ligase; protein-DNA 95.7 0.0018 6.3E-08 76.8 0.0 73 718-791 597-670 (671)
72 2dun_A POL MU, DNA polymerase 93.9 0.056 1.9E-06 52.5 5.1 89 826-923 8-109 (133)
73 3l41_A BRCT-containing protein 92.8 0.091 3.1E-06 54.3 4.9 82 828-922 5-88 (220)
74 1dgs_A DNA ligase; AMP complex 85.1 0.17 5.9E-06 60.2 0.0 75 827-910 586-660 (667)
75 2owo_A DNA ligase; protein-DNA 83.2 0.23 7.9E-06 59.2 0.0 73 827-908 596-669 (671)
76 3oq4_A DBF4, protein DNA52; DD 71.6 10 0.00035 36.9 7.6 57 736-792 33-97 (134)
77 2k2w_A Recombination and DNA r 65.0 7.1 0.00024 37.3 4.9 35 825-861 10-44 (118)
78 3oq0_A DBF4, protein DNA52; DD 58.6 39 0.0013 33.5 9.0 57 736-792 50-114 (151)
79 3qbz_A DDK kinase regulatory s 53.9 13 0.00044 37.2 4.8 81 710-791 51-151 (160)
80 2bfw_A GLGA glycogen synthase; 35.1 74 0.0025 29.8 6.7 66 720-785 69-147 (200)
81 3qhp_A Type 1 capsular polysac 24.8 2.2E+02 0.0076 25.7 7.9 60 721-782 32-104 (166)
82 3fro_A GLGA glycogen synthase; 21.2 2E+02 0.0069 29.9 7.7 65 720-784 284-361 (439)
No 1
>3sqd_A PAX-interacting protein 1; tandem BRCT domains, cell cycle; HET: SEP; 2.15A {Homo sapiens}
Probab=100.00 E-value=6.4e-40 Score=337.13 Aligned_cols=202 Identities=32% Similarity=0.540 Sum_probs=184.8
Q ss_pred cCCCeEEEEcCCCCHHHHHHHHHHHHHcCCEEeccCCCceEEEeCCCCCcHHHHHHHHCCCCEecHHHHHHHHHhCCCCC
Q 002369 718 DMASIQVLFSHHLDEDIIKQQKKILDRLGASEVSSITDATHFVTDIFVRTRNMLEAIASGKPVVTHLWLESIAQVKIHID 797 (930)
Q Consensus 718 ~ms~vrVlFSG~~dee~~k~LKkiIkkLGG~Vaddisk~THLVa~k~~RT~KfL~AIA~GkpIVSp~WL~eClkagk~VD 797 (930)
-+.+++|+|||+.+.+ .+.+.++|+.|||.|++++.+||||||+.+.||.|||+|++.|+|||+++||.+|+++|+++|
T Consensus 13 ~~~~~~i~~SG~~~~~-~~~l~~~i~~lGg~v~~~~~~~THLI~~~~~rT~K~l~A~~~g~~IVs~~Wl~~c~~~~~~l~ 91 (219)
T 3sqd_A 13 PELTPFVLFTGFEPVQ-VQQYIKKLYILGGEVAESAQKCTHLIASKVTRTVKFLTAISVVKHIVTPEWLEECFRCQKFID 91 (219)
T ss_dssp GGGCCEEEECSCCHHH-HHHHHHHHHHTTCEECSSGGGCSEEECSSCCCCHHHHHHTTTCSEEECHHHHHHHHHHTSCCC
T ss_pred CCCCeEEEEeCCChHH-HHHHHHHHHHCCCEEeCCCCCceEEEECCCCCCHHHHHHHHcCCCEecHHHHHHHHHcCCCCC
Confidence 3678999999997654 567899999999999999889999999999999999999999999999999999999999999
Q ss_pred CcCcccCCchhhhhcCCCchHHhhhccCCCCCCCceEEEeCCCCCCHHHHHHHHHhCCcEEEeccCcc--cc--cCCCCC
Q 002369 798 EESYLLRDTKKEKEFGFSMPASLARARKHPLLKDQRVLITPNIKPSKETISSLIKSVHGQAVERLGRS--AL--KDDKLP 873 (930)
Q Consensus 798 Ee~YeL~D~e~Eke~GfsL~~SL~rArk~~LFkG~rfyItp~vkPske~L~~LIeagGGkVV~~~prs--~l--Kd~~~p 873 (930)
|++|++.|.+.|+.|||++..++.++++.+||+|+.|||++.+.|+++.|++||+++||+|+...|.. ++ +++..+
T Consensus 92 e~~y~l~d~~~e~~~~~~l~~~l~ra~~~~LF~G~~f~it~~~~~~~~~l~~lI~~~GG~v~~~~p~~~~~~~~~~~~~~ 171 (219)
T 3sqd_A 92 EQNYILRDAEAEVLFSFSLEESLKRAHVSPLFKAKYFYITPGICPSLSTMKAIVECAGGKVLSKQPSFRKLMEHKQNSSL 171 (219)
T ss_dssp SGGGBCCCHHHHHHTTCCHHHHHHHHHHSCTTTTEEEEECTTCSSCHHHHHHHHHHTTCEEESSCCCHHHHHHHHHCTTS
T ss_pred hHhccCCCchhhhhcCCChHHHhhhhccccccCCcEEEEeCCCCCCHHHHHHHHHHCCCEEECCCCchHHhhhhhcccCC
Confidence 99999999999999999999999999889999999999999999999999999999999999987643 11 112233
Q ss_pred CcEEEEecCCchhccHHHHhcCCeEEeHHHHHHHHhccccccccccc
Q 002369 874 DDLLILSCEEDYEICEPFLEKGAAVYSSELLLNGMVTQKLEYERYYM 920 (930)
Q Consensus 874 d~~IVISceeD~~~~~~ll~~Gi~VVSsEWILdSIL~QkLe~E~y~L 920 (930)
..++||+|++|...|.++.+.|++||++|||++||++|+||||.|.|
T Consensus 172 ~~~ivis~~~d~~~~~~~~~~~~~v~s~E~il~~Il~q~ld~~~~~~ 218 (219)
T 3sqd_A 172 SEIILISCENDLHLCREYFARGIDVHNAEFVLTGVLTQTLDYESYKF 218 (219)
T ss_dssp CEEEEEECGGGGGGGHHHHHTTCCCEETHHHHHHHHHTCCCTTTSBC
T ss_pred CCEEEEecccHHHHHHHHHHCCCcEEeHHHHHHHHHheeecchhccc
Confidence 46899999999999999999999999999999999999999999987
No 2
>2etx_A Mediator of DNA damage checkpoint protein 1; tandem BRCT domains histone gamma-H2AX, cell cycle; 1.33A {Homo sapiens} PDB: 2azm_A* 3k05_A* 2ado_A
Probab=100.00 E-value=4.3e-39 Score=326.78 Aligned_cols=204 Identities=26% Similarity=0.494 Sum_probs=179.5
Q ss_pred chhhhhccCCCeEEEEcCCCCHHHHHHHHHHHHHcCCEEeccCCCceEEEeCCCCCcHHHHHHHHCCCCEecHHHHHHHH
Q 002369 711 KDLRKRRDMASIQVLFSHHLDEDIIKQQKKILDRLGASEVSSITDATHFVTDIFVRTRNMLEAIASGKPVVTHLWLESIA 790 (930)
Q Consensus 711 Kdsr~rk~ms~vrVlFSG~~dee~~k~LKkiIkkLGG~Vaddisk~THLVa~k~~RT~KfL~AIA~GkpIVSp~WL~eCl 790 (930)
++.++++...+++|+|||+.+++ ++++|+.|||.|++++.+||||||+++.||.|||+|++.|+|||+++||.+|+
T Consensus 2 ~~~~~~~~~~~~~v~~sG~~~~~----~~~~i~~lGg~~~~~~~~~THlI~~~~~rt~K~l~a~~~g~~IV~~~Wl~~~~ 77 (209)
T 2etx_A 2 HMTKLNQESTAPKVLFTGVVDAR----GERAVLALGGSLAGSAAEASHLVTDRIRRTVKFLCALGRGIPILSLDWLHQSR 77 (209)
T ss_dssp ----------CCEEEECSSCCHH----HHHHHHHTTCEECSSTTTCSEEECSSCCCSHHHHHHHHHTCCEECTHHHHHHH
T ss_pred CcccccccCCCcEEEEeCCCcHH----HHHHHHHCCCEEeCCCCCceEEEECCCCCCHHHHHHHhcCCccccHHHHHHHH
Confidence 35567788999999999998764 36789999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCCCcCcccCCchhhhhcCCCchHHhhhccCCCCCCCceEEEeCCCCCCHHHHHHHHHhCCcEEEeccCcccccCC
Q 002369 791 QVKIHIDEESYLLRDTKKEKEFGFSMPASLARARKHPLLKDQRVLITPNIKPSKETISSLIKSVHGQAVERLGRSALKDD 870 (930)
Q Consensus 791 kagk~VDEe~YeL~D~e~Eke~GfsL~~SL~rArk~~LFkG~rfyItp~vkPske~L~~LIeagGGkVV~~~prs~lKd~ 870 (930)
++++++||++|++.|++.++.|++++..++.++++.+||+|++|||++...|+.+.|.+||+++||+|+...++..
T Consensus 78 ~~~~~l~e~~y~~~~~~~~~~~~~~l~~~~~~a~~~~lF~g~~~~~~~~~~~~~~~l~~li~~~GG~v~~~~~~~~---- 153 (209)
T 2etx_A 78 KAGFFLPPDEYVVTDPEQEKNFGFSLQDALSRARERRLLEGYEIYVTPGVQPPPPQMGEIISCCGGTYLPSMPRSY---- 153 (209)
T ss_dssp HHTSCCCSGGGBCCCHHHHHHTTCCHHHHHHHHHHSCTTTTCEEEECTTCSSCHHHHHHHHHHTTCEECSSCCCSC----
T ss_pred HcCCCCChhhccccChhhhhhcCCCHHHHHhhhhhCCCcCCcEEEEeCCCCCCHHHHHHHHHHCCCEEECCCCCCC----
Confidence 9999999999999999999999999999999988889999999999999999999999999999999998766531
Q ss_pred CCCCcEEEEecCCchhccHHHHhcCCeEEeHHHHHHHHhccccccccccccccc
Q 002369 871 KLPDDLLILSCEEDYEICEPFLEKGAAVYSSELLLNGMVTQKLEYERYYMFIVL 924 (930)
Q Consensus 871 ~~pd~~IVISceeD~~~~~~ll~~Gi~VVSsEWILdSIL~QkLe~E~y~Lf~d~ 924 (930)
....+||+|++|...|..+.+.|++||++|||++||++|+|+++.|+|+...
T Consensus 154 --~~~~ivI~~~~d~~~~~~~~~~~i~vvs~eWi~~sI~~q~ld~e~y~l~~~~ 205 (209)
T 2etx_A 154 --KPQRVVITCPQDFPHCSIPLRVGLPLLSPEFLLTGVLKQEAKPEAFVLSPLE 205 (209)
T ss_dssp --CTTEEEECCGGGGGGCHHHHHHTCCEECTHHHHHHHHHTCCCGGGGBCCTTC
T ss_pred --CCceEEEECcccHHHHHHHHHCCCeEEcHHHHHHHHHhcccChHHheecCCC
Confidence 2246888999999899888899999999999999999999999999998653
No 3
>3l41_A BRCT-containing protein 1; BRC1, BRCT domain, tandem BRCT repeat, phosphoserine binding domain, DNA repair, cell division, mitosis; HET: SEP; 1.45A {Schizosaccharomyces pombe} PDB: 3l40_A*
Probab=100.00 E-value=2.2e-38 Score=326.77 Aligned_cols=201 Identities=25% Similarity=0.357 Sum_probs=175.5
Q ss_pred cCCCeEEEEcCCCCHHHHHHHHHHHHHcCCEEeccCCCceEEEeCCCCCcHHHHHHHHCCCCEecHHHHHHHHHhCCCCC
Q 002369 718 DMASIQVLFSHHLDEDIIKQQKKILDRLGASEVSSITDATHFVTDIFVRTRNMLEAIASGKPVVTHLWLESIAQVKIHID 797 (930)
Q Consensus 718 ~ms~vrVlFSG~~dee~~k~LKkiIkkLGG~Vaddisk~THLVa~k~~RT~KfL~AIA~GkpIVSp~WL~eClkagk~VD 797 (930)
.-.+++|+|||+.+.+ ..++|+.|||.|++++.+||||||+++.||.|||+|++.|+|||+++||.+|+++|+++|
T Consensus 5 ~~~~~~v~fSG~~~~~----~~~~i~~lGg~v~~~~~~~THlV~~~~~RT~K~l~Aia~g~~IVs~~Wl~~~~~~~~~l~ 80 (220)
T 3l41_A 5 ASKRVYITFTGYDKKP----SIDNLKKLDMSITSNPSKCTHLIAPRILRTSKFLCSIPYGPCVVTMDWINSCLKTHEIVD 80 (220)
T ss_dssp --CCEEEEECSCSSCC----CCGGGGGGTEEECSCTTTCSEEECSSCCCBHHHHHHGGGCCEEECHHHHHHHHHHTSCCC
T ss_pred ccceEEEEEeccCCCC----CcchHhhcceeeccCchhhhhhhhhhHhhhcceeecCCCCCeEEEhHHHHhhhhhhhccc
Confidence 3568999999998764 267899999999999999999999999999999999999999999999999999999999
Q ss_pred CcCcccCCchhhhhcCCCchHHhhhccC--CCCCCCceEEEeCCC--CCCHHHHHHHHHhCCcEEEeccCccc-c-cCCC
Q 002369 798 EESYLLRDTKKEKEFGFSMPASLARARK--HPLLKDQRVLITPNI--KPSKETISSLIKSVHGQAVERLGRSA-L-KDDK 871 (930)
Q Consensus 798 Ee~YeL~D~e~Eke~GfsL~~SL~rArk--~~LFkG~rfyItp~v--kPske~L~~LIeagGGkVV~~~prs~-l-Kd~~ 871 (930)
|++|+|.|.+.|++|||+|..++.+++. .+||+|++|||++.+ .|+.+.|++||+++||+|+. .|... . +...
T Consensus 81 e~~y~l~d~~~e~~~~~~l~~~~~rar~~~~~LF~G~~f~it~~~~~~p~~~~l~~iI~~~GG~v~~-~p~~~~~~~~~~ 159 (220)
T 3l41_A 81 EEPYLLNDPEKELELGCTLESALKRARAQGPSLLEDYVVYLTSKTVAPENVPAVISIVKSNGGVCST-LNVYNKRLARHL 159 (220)
T ss_dssp SGGGBCCCHHHHHHHTSCHHHHHHHHHHHCSCTTTTSEEEEETTSSCGGGHHHHHHHHHHTTCEEEE-ECSCCHHHHHHH
T ss_pred cCccccCCcHHHhhccccHHHHHHHHHhcCchhhhheeEEEeccccCCCCCceEEEEEecCCcEech-hhHHHHHHHHhc
Confidence 9999999999999999999999988765 899999999999998 78899999999999999998 44211 0 0001
Q ss_pred CCCcEEEEecCCchhccHHHHhc-----CCeEEeHHHHHHHHhcccccccccccccc
Q 002369 872 LPDDLLILSCEEDYEICEPFLEK-----GAAVYSSELLLNGMVTQKLEYERYYMFIV 923 (930)
Q Consensus 872 ~pd~~IVISceeD~~~~~~ll~~-----Gi~VVSsEWILdSIL~QkLe~E~y~Lf~d 923 (930)
.++.++||+|++|...|..|.+. ++.||++||||++|++|+|+|+.+++++.
T Consensus 160 ~~~~~~vis~~~d~~~~~~f~~~~~~~~~~~i~~~e~ll~~il~q~l~~~~~~~~~~ 216 (220)
T 3l41_A 160 EDGNVVLITCNEDSHIWTNFLDNASQNKTIFLQNYDWLIKTVLRQEIDVNDRIADEF 216 (220)
T ss_dssp HHCCEEEEECGGGHHHHTTTHHHHTTCTTEEEEEHHHHHHHHHHTCCCTTCCBCGGG
T ss_pred ccCCEEEEEeCCcchHHHHhhccccccceEEEechhHHHHHHHHHHcCcchHHHHHH
Confidence 12458999999999999777653 34599999999999999999999999875
No 4
>3al2_A DNA topoisomerase 2-binding protein 1; BRCT domain, protein binding, DNA binding protein; HET: DNA MSE; 2.00A {Homo sapiens} PDB: 3al3_A*
Probab=99.97 E-value=6.8e-31 Score=272.93 Aligned_cols=200 Identities=14% Similarity=0.182 Sum_probs=151.7
Q ss_pred CCCeEEEEcCCCCHHHHHHHHHHHHHcCCEEec--cC-CCceEEEeCCCCCcHHHHHHHHCCCCEecHHHHHHHHHhCCC
Q 002369 719 MASIQVLFSHHLDEDIIKQQKKILDRLGASEVS--SI-TDATHFVTDIFVRTRNMLEAIASGKPVVTHLWLESIAQVKIH 795 (930)
Q Consensus 719 ms~vrVlFSG~~dee~~k~LKkiIkkLGG~Vad--di-sk~THLVa~k~~RT~KfL~AIA~GkpIVSp~WL~eClkagk~ 795 (930)
...++|+|||+.+++ .+.+.++|+.|||.|+. ++ .+||||||+.+.||+|||+||+.|+|||+++||.+|+++|+|
T Consensus 7 ~~~~~~~~Sg~~~~~-~~~l~~~i~~LGg~~~~~~~~~~~~THlV~~~~~RT~K~l~aia~G~wIvs~~wl~~s~~~g~~ 85 (235)
T 3al2_A 7 KKQYIFQLSSLNPQE-RIDYCHLIEKLGGLVIEKQCFDPTCTHIVVGHPLRNEKYLASVAAGKWVLHRSYLEACRTAGHF 85 (235)
T ss_dssp -CCCEEEEESCCHHH-HHHHHHHHHHTTCEECCSSSCCTTCCEEEESSCCCSHHHHHHHHTTCEEECTHHHHHHHHHTSC
T ss_pred CCCEEEEEcCCCHHH-HHHHHHHHHHcCCEEeccCCCCCCCcEEEECCCCCCHHHHHHHHcCCcCccHHHHHHHHHcCCC
Confidence 468999999997544 56789999999999986 46 489999999999999999999999999999999999999999
Q ss_pred CCCcCcccCCchhhh---hcCCC---chHHhhhcc-------C----CCCCCCceEEEeCCCCCCHHHHHHHHHhCCcEE
Q 002369 796 IDEESYLLRDTKKEK---EFGFS---MPASLARAR-------K----HPLLKDQRVLITPNIKPSKETISSLIKSVHGQA 858 (930)
Q Consensus 796 VDEe~YeL~D~e~Ek---e~Gfs---L~~SL~rAr-------k----~~LFkG~rfyItp~vkPske~L~~LIeagGGkV 858 (930)
+||++|+|.++..+. .+++. +..+..++| . .+||.|++|||++. .+..+.|++||+++||+|
T Consensus 86 l~E~~ye~~~~~~~d~~~~~~~~~~~l~~a~~r~R~~l~~~~~~g~~~~lF~g~~v~l~~~-~~~~~~l~~ii~agGg~v 164 (235)
T 3al2_A 86 VQEEDYEWGSSSILDVLTGINVQQRRLALAAMRWRKKIQQRQESGIVEGAFSGWKVILHVD-QSREAGFKRLLQSGGAKV 164 (235)
T ss_dssp CCSGGGBTTSHHHHTTCTTSCHHHHHHHHHHHHHHHHHHHHHTTTCCSSTTTTCEEEEECC-HHHHHHHHHHHHHTTCEE
T ss_pred CChhceeecCcchhccccCCChhhhHHHHHHHHHHHHHHhcccccccCCCCCCcEEEEecC-CCcHHHHHHHHHcCCcEE
Confidence 999999999976542 23322 333332222 1 58999999999986 345688999999999999
Q ss_pred EeccCcccccCCCCCCcEEEEec---CCch-hccHHHHhcCCeEEeHHHHHHHHhcccc-cccccccccc
Q 002369 859 VERLGRSALKDDKLPDDLLILSC---EEDY-EICEPFLEKGAAVYSSELLLNGMVTQKL-EYERYYMFIV 923 (930)
Q Consensus 859 V~~~prs~lKd~~~pd~~IVISc---eeD~-~~~~~ll~~Gi~VVSsEWILdSIL~QkL-e~E~y~Lf~d 923 (930)
+...+.....+ ....+|... +++. ..+..+.+.|++||+.|||+++|++|++ +++.|+|-+-
T Consensus 165 l~~~~~~~~~~---~t~~~vd~~~~~~~~~~~~~~~~~~~~i~~v~~ewlld~i~~~~~~~~~~y~l~~~ 231 (235)
T 3al2_A 165 LPGHSVPLFKE---ATHLFSDLNKLKPDDSGVNIAEAAAQNVYCLRTEYIADYLMQESPPHVENYCLPEA 231 (235)
T ss_dssp CSSCCGGGGGG---CSEEEECC--------CCCHHHHHHTTCEEEETHHHHHHHHCSSCCCHHHHBCGGG
T ss_pred ecCCCCCcccc---CceEEEecccCCccchhHHHHHHHHcCCcEEcHHHHHHHHhcCCCCChhheEcccc
Confidence 97654322221 112222111 1121 2345677889999999999999999976 8899988653
No 5
>1l0b_A BRCA1; TANDEM-BRCT, three-helix bundle, unknown function; 2.30A {Rattus norvegicus} SCOP: c.15.1.3 c.15.1.3
Probab=99.96 E-value=1.9e-28 Score=248.83 Aligned_cols=203 Identities=13% Similarity=0.188 Sum_probs=145.4
Q ss_pred hccCCCeEEEEcCCCCHHHHHHHHHHHHHcCCEEeccCC-CceEEEeCCC-----CCcHHHHHHHHCCCCEecHHHHHHH
Q 002369 716 RRDMASIQVLFSHHLDEDIIKQQKKILDRLGASEVSSIT-DATHFVTDIF-----VRTRNMLEAIASGKPVVTHLWLESI 789 (930)
Q Consensus 716 rk~ms~vrVlFSG~~dee~~k~LKkiIkkLGG~Vaddis-k~THLVa~k~-----~RT~KfL~AIA~GkpIVSp~WL~eC 789 (930)
.+.+.++.|+|||+.+.+ ...+.++++.+||.++.++. .|||||+... .||.|||+|++.|+|||+++||.+|
T Consensus 2 ~~~~~~~~i~~sg~~~~~-~~~l~~~~~~~G~~~~~~~~~~~THlI~~~~~~~~~~rt~K~~~a~~~g~~IV~~~Wl~~~ 80 (229)
T 1l0b_A 2 ERAERDISMVVSGLTPKE-VMIVQKFAEKYRLALTDVITEETTHVIIKTDAEFVCERTLKYFLGIAGGKWIVSYSWVIKS 80 (229)
T ss_dssp -CCCCCCEEEEESCCHHH-HHHHHHHHHHTTCEECSSCCSSCCEEEECBCTTSEECCCHHHHHHHHTTCEEEETHHHHHH
T ss_pred CCCCCCeEEEEcCCCHHH-HHHHHHHHHHcCCEEeCCcCCCCCEEEEcCCccccccccHHHHHHHHCCCcEecHHHHHHH
Confidence 467889999999997554 56789999999999999986 7999999986 8999999999999999999999999
Q ss_pred HHhCCCCCCcCcccCCchhhhhcCCCchHHhhhccCCCCCCCceEEEeC-CCCCCHHHHHHHHHhCCcEEEeccCccccc
Q 002369 790 AQVKIHIDEESYLLRDTKKEKEFGFSMPASLARARKHPLLKDQRVLITP-NIKPSKETISSLIKSVHGQAVERLGRSALK 868 (930)
Q Consensus 790 lkagk~VDEe~YeL~D~e~Eke~GfsL~~SL~rArk~~LFkG~rfyItp-~vkPske~L~~LIeagGGkVV~~~prs~lK 868 (930)
+++|+++||++|++.+...+.. ....+ ...+..+.+||.|+.|||.+ ...+..+.|+.||+++||+|+...+.....
T Consensus 81 ~~~~~~~~e~~y~~~~~~~~~~-~~~~~-~~~r~~~~~lF~g~~~~~~~~~~~~~~~~l~~li~~~GG~v~~~~~~~~~~ 158 (229)
T 1l0b_A 81 IQERKLLSVHEFEVKGDVVTGS-NHQGP-RRSRESQEKLFEGLQIYCCEPFTNMPKDELERMLQLCGASVVKELPLLTRD 158 (229)
T ss_dssp HTTTSCCCSGGGBCCEETTTCS-SSCHH-HHHHHHC--CCTTCEEEECSCCSSSCHHHHHHHHHHTTCEEECSSSCGGGC
T ss_pred HHCCCcCChHHeEecccccccc-ccccc-hhhhhhhhhhhcCceEEEEecCCCCCHHHHHHHHHHCCCEEeCCccccccc
Confidence 9999999999999986533211 01111 12233456899999999975 455779999999999999999876543211
Q ss_pred CCCCCCcEEEEecCC--chhccHHH-HhcCCeEEeHHHHHHHHhcccc-cccccccccc
Q 002369 869 DDKLPDDLLILSCEE--DYEICEPF-LEKGAAVYSSELLLNGMVTQKL-EYERYYMFIV 923 (930)
Q Consensus 869 d~~~pd~~IVIScee--D~~~~~~l-l~~Gi~VVSsEWILdSIL~QkL-e~E~y~Lf~d 923 (930)
.....++|+.... +...+..+ ...+++||+++||++||..|++ +++.|+|...
T Consensus 159 --~~~~~~vvv~~~~~~~~~~~~~l~~~~~i~iVs~~WlldsI~~~~~~~~~~Y~l~~~ 215 (229)
T 1l0b_A 159 --TGAHPIVLVQPSAWTEDNDCPDIGQLCKGRLVMWDWVLDSISVYRCRDLDAYLVQNI 215 (229)
T ss_dssp --CSSCCEEEEC-------------------CEEETHHHHHHHHTTSCCCGGGGBCC--
T ss_pred --CCCceEEEEcCCccchhhhHHHHHHHcCCeEeehhHHHHHHhcCCcCCccceEcccc
Confidence 1122345554321 11222333 3468999999999999999874 6788887643
No 6
>3u3z_A Microcephalin; DNA repair, cell cycle regulation, cell cycle; HET: SEP PTR; 1.50A {Homo sapiens} PDB: 3szm_A* 3t1n_A* 3sht_A 3shv_A*
Probab=99.96 E-value=1.3e-28 Score=249.44 Aligned_cols=182 Identities=18% Similarity=0.264 Sum_probs=144.0
Q ss_pred CeEEEEcCCCCHHHHHHHHHHHHHcCC-EEeccCC-CceEEEeCCCCCcHHHHHHHHCCCCEecHHHHHHHHHhCCCCCC
Q 002369 721 SIQVLFSHHLDEDIIKQQKKILDRLGA-SEVSSIT-DATHFVTDIFVRTRNMLEAIASGKPVVTHLWLESIAQVKIHIDE 798 (930)
Q Consensus 721 ~vrVlFSG~~dee~~k~LKkiIkkLGG-~Vaddis-k~THLVa~k~~RT~KfL~AIA~GkpIVSp~WL~eClkagk~VDE 798 (930)
...|++||+.+++ .+.+.++++.||| .++.++. .|||||++...||.|||.||+.|+|||+++||.+|+++|+|+||
T Consensus 11 ~~~~~~sgl~~~~-~~~l~~~i~~lgG~~~~~~~~~~~THlv~~~~~rT~K~l~ai~~g~~Iv~~~Wv~~~~~~g~~l~e 89 (199)
T 3u3z_A 11 TRTLVMTSMPSEK-QNVVIQVVDKLKGFSIAPDVCETTTHVLSGKPLRTLNVLLGIARGCWVLSYDWVLWSLELGHWISE 89 (199)
T ss_dssp CCEEEEESCCHHH-HHHHHHHHHHHCSCEEESSCCTTEEEEEESSCCCBHHHHHHHHTTCEEEETHHHHHHHHHTSCCCS
T ss_pred CeEEEEcCCCHHH-HHHHHHHHHHcCCcEEecCCCCCCeEEEECCCCCCHHHHHHHHCCCcEEeHHHHHHHhhCCCCCCh
Confidence 5678999997554 5678999999988 6778887 69999999999999999999999999999999999999999999
Q ss_pred cCcccCCchhhhhcCCCchHHh-hhccCCCCCCCce-EEEeCCCCCCHHHHHHHHHhCCcEEEeccCcccccCCCCCCcE
Q 002369 799 ESYLLRDTKKEKEFGFSMPASL-ARARKHPLLKDQR-VLITPNIKPSKETISSLIKSVHGQAVERLGRSALKDDKLPDDL 876 (930)
Q Consensus 799 e~YeL~D~e~Eke~GfsL~~SL-~rArk~~LFkG~r-fyItp~vkPske~L~~LIeagGGkVV~~~prs~lKd~~~pd~~ 876 (930)
++|+|.+...+... +++...+ .+..+.+||+|+. ||+++...|+++.|++||+++||+|+.....+ +
T Consensus 90 ~~y~~~~~~~~~~~-~rl~r~~~~~~~~~~LF~g~~~~~v~~~~~~~~~~L~~lI~~~GG~v~~~~~~~---------~- 158 (199)
T 3u3z_A 90 EPFELSHHFPAAPL-CRSECHLSAGPYRGTLFADQPVMFVSPASSPPVAKLCELVHLCGGRVSQVPRQA---------S- 158 (199)
T ss_dssp GGGBCTTTCTHHHH-HHHHHHHCSSSCCCCTTTTSCCEEECTTCSSCHHHHHHHHHHTTCCBCSSGGGC---------S-
T ss_pred hhccccCCcccccc-chhhhhhhcccccchhhCCCeEEEECCCCCCCHHHHHHHHHHcCCEEeccCCCC---------E-
Confidence 99999987544321 1222211 1223578999994 88888888999999999999999998765321 2
Q ss_pred EEEecCCchhccHHHHhcCCeEEeHHHHHHHHhccc-cccccccc
Q 002369 877 LILSCEEDYEICEPFLEKGAAVYSSELLLNGMVTQK-LEYERYYM 920 (930)
Q Consensus 877 IVISceeD~~~~~~ll~~Gi~VVSsEWILdSIL~Qk-Le~E~y~L 920 (930)
++| ++.... ...+++||+++||+|||..++ ++++.|.|
T Consensus 159 iiI-~~~~~~-----~~~~~~~V~p~Wi~DsI~~~~llp~~~Y~~ 197 (199)
T 3u3z_A 159 IVI-GPYSGK-----KKATVKYLSEKWVLDSITQHKVCAPENYLL 197 (199)
T ss_dssp EEE-SCCCSC-----CCTTCEEECHHHHHHHHHHTSCCCGGGGBC
T ss_pred EEE-eCCchh-----ccCCCcEEChhHHHHHHHcCCcCChHhccC
Confidence 455 332221 246899999999999999866 67888865
No 7
>1t15_A Breast cancer type 1 susceptibility protein; protein-peptide complex, antitumor protein; HET: SEP; 1.85A {Homo sapiens} SCOP: c.15.1.3 c.15.1.3 PDB: 1jnx_X* 1t29_A* 1t2v_A* 1y98_A* 3coj_X* 3k0h_A* 3k0k_A* 3pxe_A* 3pxb_A 3pxc_X 1t2u_A 1n5o_X 3pxa_A 3k15_A* 3k16_A* 3pxd_A 2ing_X 1oqa_A
Probab=99.95 E-value=2.5e-27 Score=237.17 Aligned_cols=194 Identities=15% Similarity=0.172 Sum_probs=145.1
Q ss_pred CCeEEEEcCCCCHHHHHHHHHHHHHcCCEEeccCC-CceEEEeCCC-----CCcHHHHHHHHCCCCEecHHHHHHHHHhC
Q 002369 720 ASIQVLFSHHLDEDIIKQQKKILDRLGASEVSSIT-DATHFVTDIF-----VRTRNMLEAIASGKPVVTHLWLESIAQVK 793 (930)
Q Consensus 720 s~vrVlFSG~~dee~~k~LKkiIkkLGG~Vaddis-k~THLVa~k~-----~RT~KfL~AIA~GkpIVSp~WL~eClkag 793 (930)
.++.|++||+.++ .++.+.++++.|||.+..+++ .|||||+... .||.|||+|++.|+|||+++||.+|+++|
T Consensus 3 ~~~~~~~sg~~~~-~~~~l~~~~~~~G~~~~~~~~~~~THli~~~~~~~~~~rt~k~~~a~~~g~~IV~~~Wl~~~~~~~ 81 (214)
T 1t15_A 3 KRMSMVVSGLTPE-EFMLVYKFARKHHITLTNLITEETTHVVMKTDAEFVCERTLKYFLGIAGGKWVVSYFWVTQSIKER 81 (214)
T ss_dssp -CCEEEEESCCHH-HHHHHHHHHHHHTCEECSSCCTTCCEEEECBCTTSEECCBHHHHHHHHTTCEEEETHHHHHHHHTT
T ss_pred CcEEEEECCCCHH-HHHHHHHHHHHhCCEEeCccCCCCcEEEEeCCcccchhhhHHHHHHHhcCCEEeCHHHHHHHHHCC
Confidence 4789999999754 457789999999999999986 7999999986 89999999999999999999999999999
Q ss_pred CCCCCcCcccCCchhhhhcCCCchHHhhhc---cCCCCCCCceEEEeCC-CCCCHHHHHHHHHhCCcEEEeccCcccccC
Q 002369 794 IHIDEESYLLRDTKKEKEFGFSMPASLARA---RKHPLLKDQRVLITPN-IKPSKETISSLIKSVHGQAVERLGRSALKD 869 (930)
Q Consensus 794 k~VDEe~YeL~D~e~Eke~GfsL~~SL~rA---rk~~LFkG~rfyItp~-vkPske~L~~LIeagGGkVV~~~prs~lKd 869 (930)
+++||++|++.+...+. .......++ ...+||.|+.||+... ..+.++.|+.||+++||+++...+.....
T Consensus 82 ~~~~e~~y~~~~~~~~~----~~~~~~~~~r~~~~~~lF~g~~~~~~~~~~~~~~~~l~~li~~~GG~v~~~~~~~~~~- 156 (214)
T 1t15_A 82 KMLNEHDFEVRGDVVNG----RNHQGPKRARESQDRKIFRGLEICCYGPFTNMPTDQLEWMVQLCGASVVKELSSFTLG- 156 (214)
T ss_dssp SCCCGGGGBCCEETTTB----TTCCHHHHHHTCTTSCTTTTCEEEECSCCSSSCHHHHHHHHHHTTCEECCSGGGCCCS-
T ss_pred CcCChHHeEeecccccc----ccccchhhHhhcCCCcccCCCEEEEEecCCCCCHHHHHHHHHHCCCEEecCccccccC-
Confidence 99999999998653221 111112222 2468999999999764 45679999999999999999875432110
Q ss_pred CCCCCcEEEEecCCchh---ccHH-HHhcCCeEEeHHHHHHHHhcccc-cccccccc
Q 002369 870 DKLPDDLLILSCEEDYE---ICEP-FLEKGAAVYSSELLLNGMVTQKL-EYERYYMF 921 (930)
Q Consensus 870 ~~~pd~~IVISceeD~~---~~~~-ll~~Gi~VVSsEWILdSIL~QkL-e~E~y~Lf 921 (930)
.....+||..++... .... ....+++||+++||++||..|++ +++.|.|.
T Consensus 157 --~~~~~ivi~~~~~~~~~~~~~~~a~~~~~~iV~~~Wi~dsi~~~~~l~~~~Y~l~ 211 (214)
T 1t15_A 157 --TGVHPIVVVQPDAWTEDNGFHAIGQMCEAPVVTREWVLDSVALYQCQELDTYLIP 211 (214)
T ss_dssp --TTCCEEEEECGGGCSSCGGGGSSTTTCSSCEEEHHHHHHHHHHTSCCCSGGGBCC
T ss_pred --CCCccEEEECCCcccchhhHHHHHHhcCCcEEeccHHHHhHhhcCcCCCcceeec
Confidence 111223343322211 1111 13468999999999999999875 67787664
No 8
>2nte_A BARD-1, BRCA1-associated ring domain protein 1; BRCT, ring finger, zinc-binding protein, ubiquitin LI antitumor protein; 1.90A {Homo sapiens} PDB: 3fa2_A 2r1z_A
Probab=99.94 E-value=4.3e-26 Score=230.16 Aligned_cols=185 Identities=15% Similarity=0.125 Sum_probs=137.5
Q ss_pred CCeEEEEcCCCCHHHHHHHHHHHHHcCCEEeccCC-CceEEEeCC--CCCcHHHHHHHHCCCCEecHHHHHHHHHhCCCC
Q 002369 720 ASIQVLFSHHLDEDIIKQQKKILDRLGASEVSSIT-DATHFVTDI--FVRTRNMLEAIASGKPVVTHLWLESIAQVKIHI 796 (930)
Q Consensus 720 s~vrVlFSG~~dee~~k~LKkiIkkLGG~Vaddis-k~THLVa~k--~~RT~KfL~AIA~GkpIVSp~WL~eClkagk~V 796 (930)
.++.|++||+.+++ +..+.++++.|||.++.++. .|||||+.. ..||.|||+|++.|+|||+++||.+|+++|+++
T Consensus 1 ~~~vi~~sg~~~~~-~~~l~~~~~~~G~~~~~~~~~~~THlV~~~~~~~rt~K~l~a~~~g~~IV~~~Wl~~c~~~~~~~ 79 (210)
T 2nte_A 1 GPLVLIGSGLSSEQ-QKMLSELAVILKAKKYTEFDSTVTHVVVPGDAVQSTLKCMLGILNGCWILKFEWVKACLRRKVCE 79 (210)
T ss_dssp CCCEEEESSCCHHH-HHHHHHHHHHTTCEEESSCCTTCCEEEESSSSCCCSHHHHHHHHTTCEEEETHHHHHHHHHTSCC
T ss_pred CCEEEEECCCCHHH-HHHHHHHHHHcCCEEeCCCCCCCeEEEEcCCCcchHHHHHHHHhcCCEEecHHHHHHHHHcCCcC
Confidence 36889999997554 57799999999999999997 899999987 799999999999999999999999999999999
Q ss_pred CCcCcccCCchhhhhcCCCchHHhhhc-cCCCCCCCceEEEeCC-CCCCHHHHHHHHHhCCcEEEeccCccc----ccCC
Q 002369 797 DEESYLLRDTKKEKEFGFSMPASLARA-RKHPLLKDQRVLITPN-IKPSKETISSLIKSVHGQAVERLGRSA----LKDD 870 (930)
Q Consensus 797 DEe~YeL~D~e~Eke~GfsL~~SL~rA-rk~~LFkG~rfyItp~-vkPske~L~~LIeagGGkVV~~~prs~----lKd~ 870 (930)
||++|++.+.- ....+.+. ...+||+|+.||+++. ..++++.|++||+++||+|+...|... ....
T Consensus 80 ~e~~y~~~~~~--------~~~r~~~~~~~~~lF~g~~~~l~~~~~~~~~~~l~~lI~~~GG~v~~~~p~~~~~~~~~~~ 151 (210)
T 2nte_A 80 QEEKYEIPEGP--------RRSRLNREQLLPKLFDGCYFYLWGTFKHHPKDNLIKLVTAGGGQILSRKPKPDSDVTQTIN 151 (210)
T ss_dssp CGGGTBCTTHH--------HHHHHHHHTTCCCTTTTCEEEECSCCSSSCHHHHHHHHHHTTCEEESSCCCGGGCGGGSSC
T ss_pred ChhhccCCCCC--------hhhhhccccccccccCceEEEEeccCCCCCHHHHHHHHHHCCCEEEecCCCCccccccccc
Confidence 99999998521 01112222 2368999999999874 456799999999999999997655321 0000
Q ss_pred CC----------CC-cEEEEecCCchhccHH-HHhcCCeEEeHHHHHHHHhccccc
Q 002369 871 KL----------PD-DLLILSCEEDYEICEP-FLEKGAAVYSSELLLNGMVTQKLE 914 (930)
Q Consensus 871 ~~----------pd-~~IVISceeD~~~~~~-ll~~Gi~VVSsEWILdSIL~QkLe 914 (930)
.. +. ..+||.. ........ +...++++|+++||++||..++|-
T Consensus 152 ~v~~~~~~~~~~~~~t~~iv~~-~~~~~~~~~~~~~~v~~V~~~Wl~dcI~~~~ll 206 (210)
T 2nte_A 152 TVAYHARPDSDQRFCTQYIIYE-DLCNYHPERVRQGKVWKAPSSWFIDCVMSFELL 206 (210)
T ss_dssp CCCTTSCTTCGGGTCCEEEEEC-SCSSCCCSCSEETTEEEEEHHHHHHHHHHTSCC
T ss_pred eeeeccCCCcccccceEEEEec-cccccCHHHHhccCcccccHHHHHHHHHhCeec
Confidence 00 00 1233322 21111011 123467899999999999998853
No 9
>1kzy_C Tumor suppressor P53-binding protein 1; tandem-BRCT and linker complexed with non-BRCT protein, three-helix bundle, parallel beta sheet; 2.50A {Homo sapiens} SCOP: c.15.1.4 c.15.1.4 PDB: 1gzh_B
Probab=99.92 E-value=2.9e-24 Score=225.83 Aligned_cols=201 Identities=15% Similarity=0.156 Sum_probs=147.1
Q ss_pred cCCCeEEEEcCCCCHH----------------------------HHHHHHHHHHHcCCEEeccCCC-------ceEEEeC
Q 002369 718 DMASIQVLFSHHLDED----------------------------IIKQQKKILDRLGASEVSSITD-------ATHFVTD 762 (930)
Q Consensus 718 ~ms~vrVlFSG~~dee----------------------------~~k~LKkiIkkLGG~Vaddisk-------~THLVa~ 762 (930)
=+.++.+++|+....+ .+.+++++|+.+||.|+.++.+ +||||++
T Consensus 15 iF~g~~F~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~~~I~~~GG~v~~~~~~~~~~~~~~t~LIa~ 94 (259)
T 1kzy_C 15 LFLGYAFLLTMATTSDKLASRSKLPDGPTGSSEEEEEFLEIPPFNKQYTESQLRAGAGYILEDFNEAQCNTAYQCLLIAD 94 (259)
T ss_dssp TTTTEEEEECCCC---------------------------CCCCCHHHHHHHHHTTTCEECSSCCTTTTTTTCEEEEEES
T ss_pred CcCCcEEEEEcccccccccccccccccccccccccccccccCcccHHHHHHHHHHCCCEEecCccccccccCCCeEEEcC
Confidence 4889999999986431 2357899999999999998874 4899999
Q ss_pred CCCCcHHHHHHHHCCCCEecHHHHHHHHHhCCCCCCcCcccCCchhhhhcCCCchHHhhhccCCCCCCCceEEEeCCCCC
Q 002369 763 IFVRTRNMLEAIASGKPVVTHLWLESIAQVKIHIDEESYLLRDTKKEKEFGFSMPASLARARKHPLLKDQRVLITPNIKP 842 (930)
Q Consensus 763 k~~RT~KfL~AIA~GkpIVSp~WL~eClkagk~VDEe~YeL~D~e~Eke~GfsL~~SL~rArk~~LFkG~rfyItp~vkP 842 (930)
+..||.|||+|++.|+|||+++||.+|+++++++|+++|+|.+.... ... ..+..+++.+||+|++|||++...+
T Consensus 95 ~~~rt~K~l~ala~g~~iVs~~Wl~dc~~~~~~l~~~~Y~l~~g~s~--~~~---~~~~~~~~~~LF~G~~I~i~~~~~~ 169 (259)
T 1kzy_C 95 QHCRTRKYFLCLASGIPCVSHVWVHDSCHANQLQNYRNYLLPAGYSL--EEQ---RILDWQPRENPFQNLKVLLVSDQQQ 169 (259)
T ss_dssp SCCCSHHHHHHHHHTCCEEETHHHHHHHHHTSCCCGGGSBCCCEEET--TTT---EEECCCCCCCTTTTCEEEEEESCTT
T ss_pred CCCCcHHHHHHHhcCCCCccHHHHHHHHHcCCcCCHHHccCCCCccc--ccc---hhhhccccCCCCCCeEEEEecCCCC
Confidence 99999999999999999999999999999999999999999863211 000 0111233578999999999988765
Q ss_pred -CHHHHHHHHHhCCcEEEeccCccc-ccCC-CCCCcEEEEecCCchhccHHHHhcCCeEEeHHHHHHHHhccc-cccccc
Q 002369 843 -SKETISSLIKSVHGQAVERLGRSA-LKDD-KLPDDLLILSCEEDYEICEPFLEKGAAVYSSELLLNGMVTQK-LEYERY 918 (930)
Q Consensus 843 -ske~L~~LIeagGGkVV~~~prs~-lKd~-~~pd~~IVISceeD~~~~~~ll~~Gi~VVSsEWILdSIL~Qk-Le~E~y 918 (930)
..+.+..||+++||.++.+..... .++. ..+.+++|+.............+.+++||+.|||++||+.|+ |+++.|
T Consensus 170 ~~~~~~~~Il~~~Ga~vv~~~~s~~~~~d~~~~~~~viv~d~~~~~~~~~~a~~~~i~iVs~EWv~~sI~~~~ll~~~~h 249 (259)
T 1kzy_C 170 NFLELWSEILMTGGAASVKQHHSSAHNKDIALGVFDVVVTDPSCPASVLKCAEALQLPVVSQEWVIQCLIVGERIGFKQH 249 (259)
T ss_dssp TTHHHHHHHHHHTTCSEEEEEESSSSCCCSCGGGCSEEEECTTCCHHHHHHHHHHTCCEECHHHHHHHHHHTSCCCTTSS
T ss_pred CHHHHHHHHHHhcCCEEEeccccchhhhhccCCCCeEEEECCCChHHHHHHHHhcCCCEecHHHHHHHHHhCCcCCCCcC
Confidence 467889999999999987753111 1110 112344554322112222334567899999999999999977 788766
Q ss_pred ccccc
Q 002369 919 YMFIV 923 (930)
Q Consensus 919 ~Lf~d 923 (930)
-=|..
T Consensus 250 p~~~~ 254 (259)
T 1kzy_C 250 PKYKH 254 (259)
T ss_dssp GGGST
T ss_pred ccccc
Confidence 54443
No 10
>3olc_X DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, RAD9, DNA binding protein; HET: DNA; 2.40A {Homo sapiens} PDB: 2xnk_A* 2xnh_A*
Probab=99.89 E-value=2.3e-22 Score=215.48 Aligned_cols=208 Identities=12% Similarity=0.105 Sum_probs=167.8
Q ss_pred cccccchhhHHHHhhhcCCCCCCCccchhhhhccCCCeEEEEcCCCCHHHHHHHHHHHHHcCCEEeccCC-CceEEEeCC
Q 002369 685 KNLAKSCLVKEINRLIATEPEPLSPLKDLRKRRDMASIQVLFSHHLDEDIIKQQKKILDRLGASEVSSIT-DATHFVTDI 763 (930)
Q Consensus 685 r~L~rs~~~kEL~~L~~~~~ep~~~~Kdsr~rk~ms~vrVlFSG~~dee~~k~LKkiIkkLGG~Vaddis-k~THLVa~k 763 (930)
+++ ++..+..+.+ +..+++...++.++..|.++.|+|||+.+. .+..+.++|+.+||.+..+++ ++||||+..
T Consensus 77 ~iv-~p~~v~~c~~----~~~~lp~~~~P~y~~~l~g~~~~~tG~~~~-~r~~l~~~i~~~GG~v~~~~t~~tTHLI~~~ 150 (298)
T 3olc_X 77 RIV-GPQVVIFCMH----HQRCVPRAEHPVYNMVMSDVTISCTSLEKE-KREEVHKYVQMMGGRVYRDLNVSVTHLIAGE 150 (298)
T ss_dssp EEE-CHHHHHHHHH----TTCCCCCCSSCBCCCTTTTCEEEEESCCHH-HHHHHHHHHHHTTCEECSSCCTTCCEEEESS
T ss_pred CEE-CHHHHHHHHH----hCCcCCCCCCcccccccCCeEEEeCCCcHH-hHHHHHHHHHHCCCEEecCcCCCeeEEEEeC
Confidence 455 8888888887 455677777888899999999999999755 567899999999999999997 899999997
Q ss_pred CCCcHHHHHHHHCCCCEecHHHHHHHHHhCCCCCCcCcccCCchhhhhcCCCchHHhhhccCCCCCCCceEEEeCCCCCC
Q 002369 764 FVRTRNMLEAIASGKPVVTHLWLESIAQVKIHIDEESYLLRDTKKEKEFGFSMPASLARARKHPLLKDQRVLITPNIKPS 843 (930)
Q Consensus 764 ~~RT~KfL~AIA~GkpIVSp~WL~eClkagk~VDEe~YeL~D~e~Eke~GfsL~~SL~rArk~~LFkG~rfyItp~vkPs 843 (930)
. +|.||..|+..|+|||+++||.+|++.++.++...|. +... ...+.++|.|+.|++++...+.
T Consensus 151 ~-~t~Ky~~A~~~gi~IV~~~Wl~~c~~~~~~~~~~~~~--~~~~-------------~~~~~~~f~g~~i~~tG~~~~~ 214 (298)
T 3olc_X 151 V-GSKKYLVAANLKKPILLPSWIKTLWEKSQEKKITRYT--DINM-------------EDFKCPIFLGCIICVTGLCGLD 214 (298)
T ss_dssp S-CSHHHHHHHHTTCCEECHHHHHHHHHHHHTTCCSSGG--GSCG-------------GGGBCCTTTTCEEEECSCCHHH
T ss_pred C-CChHHHHHHHCCCeEeeHHHHHHHHHcCCcCCccccc--cccc-------------ccccccccCCeEEEEeCCCCcc
Confidence 6 6999999999999999999999999999988766551 1100 1114579999999999987777
Q ss_pred HHHHHHHHHhCCcEEEeccCcccccCCCCCCcEEEEecCCchhccHHHHhcCCeEEeHHHHHHHHhccc-cccccccccc
Q 002369 844 KETISSLIKSVHGQAVERLGRSALKDDKLPDDLLILSCEEDYEICEPFLEKGAAVYSSELLLNGMVTQK-LEYERYYMFI 922 (930)
Q Consensus 844 ke~L~~LIeagGGkVV~~~prs~lKd~~~pd~~IVISceeD~~~~~~ll~~Gi~VVSsEWILdSIL~Qk-Le~E~y~Lf~ 922 (930)
++.|..+|+.+||+++..... ....+||..+.+-..+....+.|++||+++||++||...+ ++.+.|.|-.
T Consensus 215 r~~l~~li~~~GG~~~~~ls~--------~~~THLI~~~~~g~K~~~A~~~gi~IV~~~Wl~dsi~~g~~lde~~Y~l~~ 286 (298)
T 3olc_X 215 RKEVQQLTVKHGGQYMGQLKM--------NECTHLIVQEPKGQKYECAKRWNVHCVTTQWFFDSIEKGFCQDESIYKTEP 286 (298)
T ss_dssp HHHHHHHHHHTTCEECSSCCT--------TTCCEEECSSSCSHHHHHHHHTTCEEECHHHHHHHHHHTSCCCGGGSBSCC
T ss_pred HHHHHHHHHHcCCEEeceecC--------CCceEEEEeCCCchHHHHHHHCCCeEEeHHHHHHHHHCCCCCCchhcCCCC
Confidence 899999999999999876431 1234777665555555666678999999999999999755 6777777643
No 11
>2vxb_A DNA repair protein RHP9; BRCT, nucleus, cell cycle, DNA damage, DNA replication inhibitor, phosphoprotein, checkpoint signalling; HET: DNA; 2.3A {Schizosaccharomyces pombe} PDB: 2vxc_A*
Probab=99.85 E-value=1.3e-20 Score=196.34 Aligned_cols=184 Identities=18% Similarity=0.172 Sum_probs=134.8
Q ss_pred CCCeEEEEcCC--CCHHHHHHHHHHHHHcCCEEecc-----C---C-------------------CceEEEeCCCCCcHH
Q 002369 719 MASIQVLFSHH--LDEDIIKQQKKILDRLGASEVSS-----I---T-------------------DATHFVTDIFVRTRN 769 (930)
Q Consensus 719 ms~vrVlFSG~--~dee~~k~LKkiIkkLGG~Vadd-----i---s-------------------k~THLVa~k~~RT~K 769 (930)
+.++.|++|+. .+.....+++++|+..||.|.++ + . .+||||++...||.|
T Consensus 3 F~g~~F~ls~~~~~~~~~k~~L~~~I~~~GG~v~~~g~~~lf~~~~~~~~~~~~~~k~~~~~~~~~~t~lia~~~~rt~K 82 (241)
T 2vxb_A 3 FDDCVFAFSGPVHEDAYDRSALETVVQDHGGLVLDTGLRPLFNDPFKSKQKKLRHLKPQKRSKSWNQAFVVSDTFSRKVK 82 (241)
T ss_dssp TTTEEEEECCCSSTTSSCHHHHHHHHHHTTCEECTTCSGGGBCCSCC----CCCSCCBCGGGGGCSEEEEECSSCCCCHH
T ss_pred CCCcEEEEecCCCCchhhHHHHHHHHHHCCCEEecCcchhhccCccccccccccccccccccccccceEEEcCCCCCcHH
Confidence 67899999998 43344678999999999999886 1 1 259999999999999
Q ss_pred HHHHHHCCCCEecHHHHHHHHHhCCCCCCcCcccCCchhhhhc--------CCCchHHhh--hccCCCCCCCceEEEeCC
Q 002369 770 MLEAIASGKPVVTHLWLESIAQVKIHIDEESYLLRDTKKEKEF--------GFSMPASLA--RARKHPLLKDQRVLITPN 839 (930)
Q Consensus 770 fL~AIA~GkpIVSp~WL~eClkagk~VDEe~YeL~D~e~Eke~--------GfsL~~SL~--rArk~~LFkG~rfyItp~ 839 (930)
|++|++.|+|||+++||.+|+++++++|+.+|.|.+....... .|+....+. ...+..||+|++|||...
T Consensus 83 ~~~ala~gipiV~~~Wi~dc~~~~~~~~~~~ylL~~~~s~~~~~~~~~~~~~~~~~~~l~~~~~~~~~Lf~g~~i~~~~~ 162 (241)
T 2vxb_A 83 YLEALAFNIPCVHPQFIKQCLKMNRVVDFSPYLLASGYSHRLDCTLSQRIEPFDTTDSLYDRLLARKGPLFGKKILFIIP 162 (241)
T ss_dssp HHHHHHHTCCEECTHHHHHHHHHTSCCCSGGGBBEEEEETTTTEEEECCCCCCCTTSCHHHHHHHCCCTTTTCEEEECCC
T ss_pred HHHHHHcCCCEecHHHHHHHHHcCCcCChhhccCCCCcchhccchhhccccCCChhhHHHHHHhhcCcCCCCcEEEEEeC
Confidence 9999999999999999999999999999999999765443221 112111111 124578999999999765
Q ss_pred CCC-C------------HHHHHHHHHhCCcEEEeccCcccccCCCCCCcEEEEecCCchhccHHHHhcCCeEEeHHHHHH
Q 002369 840 IKP-S------------KETISSLIKSVHGQAVERLGRSALKDDKLPDDLLILSCEEDYEICEPFLEKGAAVYSSELLLN 906 (930)
Q Consensus 840 vkP-s------------ke~L~~LIeagGGkVV~~~prs~lKd~~~pd~~IVISceeD~~~~~~ll~~Gi~VVSsEWILd 906 (930)
... . .+.+..|++++||.+ .+.+.. .+ .+-+ +|+.++.. ...+.+++||++|||++
T Consensus 163 ~~~~~~~~~~~~~~g~~~~~~~~i~~~~Ga~~-~~v~~~--~~--~~~d-~v~~~~~~-----~~~~~~~~iV~~eWv~~ 231 (241)
T 2vxb_A 163 EAKSWQKKIENTEQGQKALAHVYHALALGADV-EIRPNV--AH--LECD-LILTMDGN-----IVDETNCPVVDPEWIVE 231 (241)
T ss_dssp C------------CHHHHHHHHHHHHHTTCEE-ECCSCC--SS--CCCS-EEECSSSC-----CCSSCSSCEECHHHHHH
T ss_pred CCcccccccccccccchHHHHHHHHHHcCCce-eccccc--cc--CCcc-EEEECCcc-----ccccCCCCEecHHHHHH
Confidence 322 1 378999999999999 544321 11 1223 33333221 12457899999999999
Q ss_pred HHhcccc
Q 002369 907 GMVTQKL 913 (930)
Q Consensus 907 SIL~QkL 913 (930)
||+.|++
T Consensus 232 ~i~~g~~ 238 (241)
T 2vxb_A 232 CLISQSD 238 (241)
T ss_dssp HHHHTSC
T ss_pred HHHhcee
Confidence 9998875
No 12
>3t7k_A RTT107, regulator of TY1 transposition protein 107; BRCT, DNA repair, phospho-peptide, protein binding; HET: SEP; 2.03A {Saccharomyces cerevisiae} PDB: 3t7j_A* 3t7i_A
Probab=99.77 E-value=1.4e-18 Score=182.03 Aligned_cols=190 Identities=9% Similarity=0.176 Sum_probs=146.2
Q ss_pred CCeEEEEcCCCCHHHHHHHHHHHHHcCCEEeccC---CCceEEEeCCCCCcHHHHHHHHCCC--CEecHHHHHHHHHh--
Q 002369 720 ASIQVLFSHHLDEDIIKQQKKILDRLGASEVSSI---TDATHFVTDIFVRTRNMLEAIASGK--PVVTHLWLESIAQV-- 792 (930)
Q Consensus 720 s~vrVlFSG~~dee~~k~LKkiIkkLGG~Vaddi---sk~THLVa~k~~RT~KfL~AIA~Gk--pIVSp~WL~eClka-- 792 (930)
..+++++||+..++..+...+.|+.||+.|++++ ..|+||||+++.||.|||+|+|+|. +||+|+||.+|++.
T Consensus 21 ~~i~ai~TGc~~~~~~~~D~~~Lr~LGI~Iv~d~~~~~~~n~LiAPkilRT~KFL~sLa~~P~~~il~p~FI~~~Lk~ih 100 (256)
T 3t7k_A 21 YDLKAVCTGCFHDGFNEVDIEILNQLGIKIFDNIKETDKLNCIFAPKILRTEKFLKSLSFEPLKFALKPEFIIDLLKQIH 100 (256)
T ss_dssp CCEEEEESSSCSSCCCHHHHHHHHHTTEEECSSCCGGGCCCEEECSSCCCBHHHHHHTTSTTCCEEECTHHHHHHHHHHC
T ss_pred eeEEEEecCCcccccCHHHHHHHHHcCeEEEecCcccCCCCEEEcCchhhHHHHHHHhccCccceEeCHHHHHHHHHHhh
Confidence 5899999999822333456779999999999999 4799999999999999999999987 49999999999998
Q ss_pred -CC------CCCCcCcccCCchhhhhcCCCchHHhhhccCCCCCCCce---EEEeCCCCCCHHHHHHHHHhCCcEEEecc
Q 002369 793 -KI------HIDEESYLLRDTKKEKEFGFSMPASLARARKHPLLKDQR---VLITPNIKPSKETISSLIKSVHGQAVERL 862 (930)
Q Consensus 793 -gk------~VDEe~YeL~D~e~Eke~GfsL~~SL~rArk~~LFkG~r---fyItp~vkPske~L~~LIeagGGkVV~~~ 862 (930)
|+ .++.++|.+.|.+.|.- . .++.+.+||+|+. |+|+.++....+.+.+|+++.||.=+..+
T Consensus 101 ~~~~~~~~~~l~~~dY~L~d~~~E~l-----~---r~~~~gkLf~~~~I~ciNls~dI~GG~e~issIleahG~~~~~~l 172 (256)
T 3t7k_A 101 SKKDKLSQININLFDYEINGINESII-----S---KTKLPTKVFERANIRCINLVNDIPGGVDTIGSVLKAHGIEKINVL 172 (256)
T ss_dssp -------CCCCCSSTTBCTTCCHHHH-----H---HTTSSSCHHHHTTCCEEEEETTCTTCHHHHHHHHHHTTCCEEEEE
T ss_pred cCCcccccccCChhhccCCCcchhHH-----h---hhccccccccCCcceeeeeccCCCCCHHHHHHHHHHcCCceeeec
Confidence 77 88999999999876621 1 1344689999995 55599998899999999999999755544
Q ss_pred Cc--ccccC-----------CCCCCcEEEEe-cCCchhccHHHHh-----cCCeEEeHHHHHHHHhccccccccc
Q 002369 863 GR--SALKD-----------DKLPDDLLILS-CEEDYEICEPFLE-----KGAAVYSSELLLNGMVTQKLEYERY 918 (930)
Q Consensus 863 pr--s~lKd-----------~~~pd~~IVIS-ceeD~~~~~~ll~-----~Gi~VVSsEWILdSIL~QkLe~E~y 918 (930)
+. ....+ +..++ +++|+ ...+...+..+.. ..+.+|.++|...||+.++++|+..
T Consensus 173 ~~~~~~~~dl~~n~~~~~~~~~~~~-~ILia~K~~q~k~Fkk~~~~~~~n~~~lvveWdWCVksIF~levd~~d~ 246 (256)
T 3t7k_A 173 RSKKCTFEDIIPNDVSKQENGGIFK-YVLIVTKASQVKKFTKLINDRDKNETILIVEWNWCVESIFHLNVDFTSK 246 (256)
T ss_dssp CTTTCCGGGCCCCC--------CCS-EEEECSCHHHHHHHHHHHHHHSTTSCEEEECHHHHHHHHHTTSCCTTCC
T ss_pred ccccccHHHhhhccccccccCCCCC-EEEEEccHHHHHHHHHHhhcccccceEEEEEcHHHHHHHhheeeccCCC
Confidence 33 11110 12333 55555 4456666666663 4578999999999999999999743
No 13
>3ii6_X DNA ligase 4; XRCC4, NHEJ, DNA repair, BRCT, alternative splicing, coiled coil, DNA damage, DNA recombination, isopeptide bond, nucleus; HET: DNA; 2.40A {Homo sapiens} PDB: 2e2w_A*
Probab=99.59 E-value=1.8e-14 Score=151.75 Aligned_cols=192 Identities=10% Similarity=0.110 Sum_probs=129.3
Q ss_pred ccCCCeEEEE-cCCCCHHHHHHHHHHHHHcCCEEeccCC-CceEEEeCCCCCcHHHHHHHHCC-CCEecHHHHHHHHHhC
Q 002369 717 RDMASIQVLF-SHHLDEDIIKQQKKILDRLGASEVSSIT-DATHFVTDIFVRTRNMLEAIASG-KPVVTHLWLESIAQVK 793 (930)
Q Consensus 717 k~ms~vrVlF-SG~~dee~~k~LKkiIkkLGG~Vaddis-k~THLVa~k~~RT~KfL~AIA~G-kpIVSp~WL~eClkag 793 (930)
.=+.++.|++ +|.... .++.++++|..+||.|..+.. .+||+|+++ +|.|+..++..| ++||+|+||.+|++++
T Consensus 9 ~lF~G~~f~V~sg~~~~-~k~~L~~lI~~~GG~v~~n~~~~t~~iIa~~--~~~k~~~~~~~g~~~IV~p~Wv~Dci~~~ 85 (263)
T 3ii6_X 9 NIFEDVEFCVMSGTDSQ-PKPDLENRIAEFGGYIVQNPGPDTYCVIAGS--ENIRVKNIILSNKHDVVKPAWLLECFKTK 85 (263)
T ss_dssp CTTTTCEEEECCCC--C-CHHHHHHHHHHTTCEECSSCCTTEEEEECSS--CCHHHHHHHHSCSCCEECHHHHHHHHHHT
T ss_pred ccCCCeEEEEEcCCCCC-CHHHHHHHHHHcCCEEEecCCCCEEEEEeCC--CCHHHHHHHhcCCCCEeehHHHHHHHhcC
Confidence 3478999986 676433 356789999999999998776 566678875 479999999998 9999999999999999
Q ss_pred CCCCCcCcccCCchh------h---hhcCCC---------chHHhhhc--------------------------cCCCCC
Q 002369 794 IHIDEESYLLRDTKK------E---KEFGFS---------MPASLARA--------------------------RKHPLL 829 (930)
Q Consensus 794 k~VDEe~YeL~D~e~------E---ke~Gfs---------L~~SL~rA--------------------------rk~~LF 829 (930)
++|+.++|.+-.... . ..||=+ |...|.+- ....||
T Consensus 86 ~llp~~p~~~~~~~~~~~~~~~~~~D~~GDsy~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lF 165 (263)
T 3ii6_X 86 SFVPWQPRFMIHMCPSTKEHFAREYDCYGDSYFIDTDLNQLKEVFSGIKNSNEQTPEEMASLIADLEYRYSWDCSPLSMF 165 (263)
T ss_dssp SCCCCCGGGEEECCHHHHHHTTTTBCTTSCBSSSCCCHHHHHHHHHSCCCCCSCCHHHHHHHHHHHHHHHTCTTCGGGTT
T ss_pred CcCCCCHHHHhhCCHHHHHHHHHhccccCCccCCcCCHHHHHHHHHhCcccccCCchhhHHHHHHHHHhhcccCCcchhh
Confidence 999988875432111 1 123211 11111110 123599
Q ss_pred CCceEEEeCC---------CCC-CHHHHHHHHHhCCcEEEeccCcccccCCCCCCcEEEEecCCch--hccHHHH---hc
Q 002369 830 KDQRVLITPN---------IKP-SKETISSLIKSVHGQAVERLGRSALKDDKLPDDLLILSCEEDY--EICEPFL---EK 894 (930)
Q Consensus 830 kG~rfyItp~---------vkP-ske~L~~LIeagGGkVV~~~prs~lKd~~~pd~~IVISceeD~--~~~~~ll---~~ 894 (930)
+|++|||... +.. ..+.++.+|..+||+++..+... -.+||..+.+. ..+..+. ..
T Consensus 166 ~~~~vy~~~~~~~~~~~~~i~~~~l~~~~~~i~~~GG~v~~~l~~~---------vTHVVv~~~~~r~~~~~~~~~~~~~ 236 (263)
T 3ii6_X 166 RRHTVYLDSYAVINDLSTKNEGTRLAIKALELRFHGAKVVSCLAEG---------VSHVIIGEDHSRVADFKAFRRTFKR 236 (263)
T ss_dssp TTCEEEECCBSSTTCGGGBCCSSHHHHHHHHHHHTTCEEESSCCTT---------CCEEEECSCCTTHHHHHHHHHTCSS
T ss_pred CCeEEEEecccccCCcccccchhHHHHHHHHHHccCCEEecCCCCC---------ceEEEECCCCccHHHHHHHHhhcCC
Confidence 9999999532 111 24567899999999999875432 13666554321 1122222 24
Q ss_pred CCeEEeHHHHHHHHhccc-cccccccc
Q 002369 895 GAAVYSSELLLNGMVTQK-LEYERYYM 920 (930)
Q Consensus 895 Gi~VVSsEWILdSIL~Qk-Le~E~y~L 920 (930)
++.||+++||.+||-..+ ++.+.|.|
T Consensus 237 ~~~iV~~~Wv~dci~~~~~l~E~~Y~i 263 (263)
T 3ii6_X 237 KFKILKESWVTDSIDKCELQEENQYLI 263 (263)
T ss_dssp CCEEEETHHHHHHHHTTSCCCGGGTBC
T ss_pred CCEEeChHHHHHHHHcCCcCCHhhCCC
Confidence 689999999999999754 66667754
No 14
>3l3e_A DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, cell cycle checkpoints, acetylation, cytoplasm, cytoskeleton, DNA damage; HET: DNA; 1.26A {Homo sapiens} PDB: 3pd7_A* 3jve_A*
Probab=99.53 E-value=2e-14 Score=131.89 Aligned_cols=87 Identities=24% Similarity=0.278 Sum_probs=78.5
Q ss_pred ccCCCeEEEEcCCCCHHHHHHHHHHHHHcCCEEeccCC-CceEEEeCC--CCCcHHHHHHHHCCCCEecHHHHHHHHHhC
Q 002369 717 RDMASIQVLFSHHLDEDIIKQQKKILDRLGASEVSSIT-DATHFVTDI--FVRTRNMLEAIASGKPVVTHLWLESIAQVK 793 (930)
Q Consensus 717 k~ms~vrVlFSG~~dee~~k~LKkiIkkLGG~Vaddis-k~THLVa~k--~~RT~KfL~AIA~GkpIVSp~WL~eClkag 793 (930)
+-+.++.|+|||+.+. .+..++++|+.|||.+..+++ +|||||+.. ..++.||..|...|+|||+++||.+|++++
T Consensus 14 ~~l~g~~i~isg~~~~-~r~~l~~li~~~Gg~v~~~~s~~~THlI~~~~~~~~~~K~~~A~~~gi~IV~~~Wl~~c~~~~ 92 (107)
T 3l3e_A 14 KPLHKVVVCVSKKLSK-KQSELNGIAASLGADYRRSFDETVTHFIYQGRPNDTNREYKSVKERGVHIVSEHWLLDCAQEC 92 (107)
T ss_dssp CTTTTCEEEECGGGGG-GHHHHHHHHHHTTCEEESSCCTTCCEEECCCCTTCCCHHHHHHHHTTCEEECHHHHHHHHHHT
T ss_pred CCCCCeEEEEeCCChH-hHHHHHHHHHHcCCEEeccccCCceEEEecCCCCCCCHHHHHHHHCCCeEecHHHHHHHHHhC
Confidence 4589999999999864 467899999999999999997 799999953 357999999999999999999999999999
Q ss_pred CCCCCcCcccC
Q 002369 794 IHIDEESYLLR 804 (930)
Q Consensus 794 k~VDEe~YeL~ 804 (930)
+++||.+|.+.
T Consensus 93 ~~l~e~~Y~~~ 103 (107)
T 3l3e_A 93 KHLPESLYPHT 103 (107)
T ss_dssp SCCCGGGCCTT
T ss_pred CCCchhhCCCC
Confidence 99999999865
No 15
>2d8m_A DNA-repair protein XRCC1; parallel beta-sheet, DNA ligase III, poly(ADP-ribose) polymerase-1, DNA polymerase beta, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=9.5e-14 Score=131.91 Aligned_cols=88 Identities=17% Similarity=0.283 Sum_probs=80.0
Q ss_pred ccCCCeEEEEcCCCCHHHHHHHHHHHHHcCCEEeccCC-CceEEEeCCCCCcHHHHHHHHCCCCEecHHHHHHHHHhCCC
Q 002369 717 RDMASIQVLFSHHLDEDIIKQQKKILDRLGASEVSSIT-DATHFVTDIFVRTRNMLEAIASGKPVVTHLWLESIAQVKIH 795 (930)
Q Consensus 717 k~ms~vrVlFSG~~dee~~k~LKkiIkkLGG~Vaddis-k~THLVa~k~~RT~KfL~AIA~GkpIVSp~WL~eClkagk~ 795 (930)
+-|.++.|+|||+...+ +..++.+|+.|||.|+.+++ .+||||+... ++.||..|+..|+|||+++||.+|++++++
T Consensus 21 ~~f~g~~i~itG~~~~~-r~~l~~~i~~~Gg~v~~~~s~~~ThLI~~~~-~~~K~~~A~~~gi~IV~~~Wl~d~~~~~~~ 98 (129)
T 2d8m_A 21 KILQGVVVVLSGFQNPF-RSELRDKALELGAKYRPDWTRDSTHLICAFA-NTPKYSQVLGLGGRIVRKEWVLDCHRMRRR 98 (129)
T ss_dssp TTSTTEEEEEESCCTTH-HHHHHHHHHHTTEEEESSCCTTCCEEEESSS-SCHHHHHHHHHTCEEEETHHHHHHHHTTSC
T ss_pred ccCCCeEEEEeCCCcHH-HHHHHHHHHHcCCEEeCCcCCCCeEEEecCC-CChHHHHHHHCCCcEecHHHHHHHHHhCCc
Confidence 35899999999998543 57899999999999999997 8999999964 699999999999999999999999999999
Q ss_pred CCCcCcccCCc
Q 002369 796 IDEESYLLRDT 806 (930)
Q Consensus 796 VDEe~YeL~D~ 806 (930)
+||.+|.+...
T Consensus 99 l~e~~Y~l~~~ 109 (129)
T 2d8m_A 99 LPSQRYLMAGP 109 (129)
T ss_dssp CCGGGGBCSSS
T ss_pred CChHhcccCCC
Confidence 99999998864
No 16
>3l46_A Protein ECT2; alternative splicing, guanine-nucleotide releasing factor, phosphoprotein, polymorphism, proto-oncogene, structural genomics; 1.48A {Homo sapiens}
Probab=99.47 E-value=1.7e-14 Score=135.41 Aligned_cols=88 Identities=16% Similarity=0.200 Sum_probs=78.5
Q ss_pred ccCCCeEEEEcCCCCHHHHHHHHHHHHHcCCEEeccCC-CceEEEeCCCCCcHHHHHHHHCCCCEecHHHHHHHHHhCCC
Q 002369 717 RDMASIQVLFSHHLDEDIIKQQKKILDRLGASEVSSIT-DATHFVTDIFVRTRNMLEAIASGKPVVTHLWLESIAQVKIH 795 (930)
Q Consensus 717 k~ms~vrVlFSG~~dee~~k~LKkiIkkLGG~Vaddis-k~THLVa~k~~RT~KfL~AIA~GkpIVSp~WL~eClkagk~ 795 (930)
+-+.+++||||||.+.+ +++++++|..+||.++.... +|||||+.... +.||.+|...|++||+++||.+|++.|..
T Consensus 20 p~F~g~~Ic~sGf~~~e-r~~l~~~i~~~GG~~~~~l~~~cTHLV~~~~~-~~K~~~A~~~~i~IVs~eWl~dsi~~g~~ 97 (112)
T 3l46_A 20 PPFQDCILSFLGFSDEE-KTNMEEMTEMQGGKYLPLGDERCTHLVVEENI-VKDLPFEPSKKLYVVKQEWFWGSIQMDAR 97 (112)
T ss_dssp CTTTTCEECEESCCHHH-HHHHHHHHHHTTCEECCTTCTTCSEEEECTTT-BSSCSSCCCSSCEEEEHHHHHHHHHHTSC
T ss_pred CccCCeEEEEeCCCHHH-HHHHHHHHHHcCCEECcccCCCceEEEecCCc-hhhHHHHHHCCeeEecHHHHHHHHHcCCc
Confidence 45889999999998654 68899999999999999876 89999999865 55888999999999999999999999999
Q ss_pred CCCcCcccCCc
Q 002369 796 IDEESYLLRDT 806 (930)
Q Consensus 796 VDEe~YeL~D~ 806 (930)
+||..|.+...
T Consensus 98 ldE~~Y~~~~~ 108 (112)
T 3l46_A 98 AGETMYLYEKA 108 (112)
T ss_dssp CCGGGSBCCC-
T ss_pred cChhhceeccC
Confidence 99999998653
No 17
>1z56_C DNA ligase IV; DNA repair, BRCT, NHEJ, XRCC4, DNA ligase, coiled-coil; HET: DNA; 3.92A {Saccharomyces cerevisiae}
Probab=99.44 E-value=8.5e-15 Score=152.57 Aligned_cols=191 Identities=13% Similarity=0.129 Sum_probs=108.2
Q ss_pred CCCeEEEE-cCCCCH-----HHHHHHHHHHHHcCCEEeccCC--C----ceEEEeCCCCCcHHHHHHHHCCCCEecHHHH
Q 002369 719 MASIQVLF-SHHLDE-----DIIKQQKKILDRLGASEVSSIT--D----ATHFVTDIFVRTRNMLEAIASGKPVVTHLWL 786 (930)
Q Consensus 719 ms~vrVlF-SG~~de-----e~~k~LKkiIkkLGG~Vaddis--k----~THLVa~k~~RT~KfL~AIA~GkpIVSp~WL 786 (930)
+.++.|++ +|..++ ..+.++..+|+.+||+++.... . .||+|+++ .|.|+-.++..|++||+|+||
T Consensus 6 F~g~~f~v~~~~~~p~~~~~~~~~~L~~li~~~GG~~~~~~~~~t~~~~~~~iI~~~--~t~k~~~~~~~~~~vV~p~Wv 83 (264)
T 1z56_C 6 FAGLLFYVLSDYVTEDTGIRITRAELEKTIVEHGGKLIYNVILKRHSIGDVRLISCK--TTTECKALIDRGYDILHPNWV 83 (264)
T ss_dssp CCTTCCCCSEEEECCCCCSSSSCCCTHHHHHHHHTTSCCCSSCCCCCSSCCEEEECS--CCGGGGGGTTTTCCCBCSSTT
T ss_pred CCCcEEEEEcCCCCccccccCCHHHHHHHHHHcCCEEeecCCCCccCccceEEEecC--CcHHHHHHHhCCCCEEechHH
Confidence 67888865 664321 1234678899999998765432 1 47899985 588888888889999999999
Q ss_pred HHHHHhCCCCCCcCcccCCchh---------hhhcCCC---------chHHhhh-----------------ccCCCCCCC
Q 002369 787 ESIAQVKIHIDEESYLLRDTKK---------EKEFGFS---------MPASLAR-----------------ARKHPLLKD 831 (930)
Q Consensus 787 ~eClkagk~VDEe~YeL~D~e~---------Eke~Gfs---------L~~SL~r-----------------Ark~~LFkG 831 (930)
.+|++++++++.++|.+-.... ...||-+ |...+.. .....||+|
T Consensus 84 ~dci~~~~llp~~~y~~~~~~~~~~~~~~~~~d~~gdsy~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~lF~g 163 (264)
T 1z56_C 84 LDCIAYKRLILIEPNYCFNVSQKMRAVAEKRVDCLGDSFENDISETKLSSLYKSQLSLPPMGELEIDSEVRRFPLFLFSN 163 (264)
T ss_dssp HHHHSSCSCCCCCSCBSCCCGGGTHHHHGGGBCSSSCBSSSCCCHHHHHHTTSCCSCCCCCCCCSSCCSCCCCCCC----
T ss_pred HHHhhcCCCCCCChHHhhcCCHHHHHHHHHhccccCCccccCCCHHHHHHHHHhcccccchhhhhhhcccccCchhhhCC
Confidence 9999999999999985432110 0111110 1111111 023569999
Q ss_pred ceEEEeCCC-CCCHHHHHHHHHhCCcEEEeccCcccccCCCCCCcEEEEecCCc--hh-ccHHHH---h-c--------C
Q 002369 832 QRVLITPNI-KPSKETISSLIKSVHGQAVERLGRSALKDDKLPDDLLILSCEED--YE-ICEPFL---E-K--------G 895 (930)
Q Consensus 832 ~rfyItp~v-kPske~L~~LIeagGGkVV~~~prs~lKd~~~pd~~IVISceeD--~~-~~~~ll---~-~--------G 895 (930)
++|||.+.. ....+.++.+|.++||+++..... ...+||..+.+ .. ....+. . . +
T Consensus 164 ~~~yl~~~~~~~~~~~l~~~i~~~GG~v~~~l~~---------~t~hVV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (264)
T 1z56_C 164 RIAYVPRRKISTEDDIIEMKIKLFGGKITDQQSL---------CNLIIIPYTDPILRKDCMNEVHEKIKEQIKASDTIPK 234 (264)
T ss_dssp ----------------CHHHHHHHTTSCCCCSSS---------CSEEECCCSSTTTHHHHSSHHHHTTTTTTTSSSSCCC
T ss_pred eEEEEecCCCchhHHHHHHHHHHcCCEEecccCC---------CEEEEEeCCCccchHHHHHHHHHHHHhhcccccccCC
Confidence 999998753 233567889999999998765432 12455543322 11 111221 1 1 3
Q ss_pred -CeEEeHHHHHHHHhccc-cccccccc
Q 002369 896 -AAVYSSELLLNGMVTQK-LEYERYYM 920 (930)
Q Consensus 896 -i~VVSsEWILdSIL~Qk-Le~E~y~L 920 (930)
..+|+++||.+||-.++ ++.+.|.+
T Consensus 235 ~~~iV~~~Wv~dci~~~~ll~e~~Y~~ 261 (264)
T 1z56_C 235 IARVVAPEWVDHSINENCQVPEEDFPV 261 (264)
T ss_dssp CCEEECTHHHHHHHTTSCCCSSCCC--
T ss_pred CCEEecHHHHHHHHHcCCcCCHHHcCC
Confidence 38999999999998766 55666643
No 18
>2cou_A ECT2 protein; BRCT domain, RHO GTPase, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.43 E-value=3.2e-14 Score=131.79 Aligned_cols=88 Identities=16% Similarity=0.197 Sum_probs=78.7
Q ss_pred ccCCCeEEEEcCCCCHHHHHHHHHHHHHcCCEEeccCC-CceEEEeCCCCCcHHHHHHHHCCCCEecHHHHHHHHHhCCC
Q 002369 717 RDMASIQVLFSHHLDEDIIKQQKKILDRLGASEVSSIT-DATHFVTDIFVRTRNMLEAIASGKPVVTHLWLESIAQVKIH 795 (930)
Q Consensus 717 k~ms~vrVlFSG~~dee~~k~LKkiIkkLGG~Vaddis-k~THLVa~k~~RT~KfL~AIA~GkpIVSp~WL~eClkagk~ 795 (930)
+-|.+++|+||||.+.+ +..++++|..+||.++..+. .|||||++... +.||..|+..|++||+++||.+|++.|.+
T Consensus 11 ~~F~g~~i~~sg~~~~~-r~~l~~~i~~~GG~~~~~~~~~~THLV~~~~~-~~K~~~a~~~~i~IV~~~Wl~dsi~~g~~ 88 (109)
T 2cou_A 11 PPFQDCILSFLGFSDEE-KHSMEEMTEMQGGSYLPVGDERCTHLIVEENT-VKDLPFEPSKKLFVVKQEWFWGSIQMDAR 88 (109)
T ss_dssp CTTTTCBEEEESSCHHH-HHHHHHHHHHHTCBCCCTTCTTCSEEEECTTT-CSSCSSCCCTTSEEECHHHHHHHHHTTSC
T ss_pred CcCCCeEEEecCCCHHH-HHHHHHHHHHcCCEEecccCCCccEEEEeCCc-cHHHHHHHHCCCeEecHHHHHHHHHcCCc
Confidence 45889999999997654 67899999999999998776 89999999754 67888999999999999999999999999
Q ss_pred CCCcCcccCCc
Q 002369 796 IDEESYLLRDT 806 (930)
Q Consensus 796 VDEe~YeL~D~ 806 (930)
+||..|.+.+.
T Consensus 89 ldE~~Y~~~~~ 99 (109)
T 2cou_A 89 AGETMYLYEKA 99 (109)
T ss_dssp CCGGGTBCCCC
T ss_pred CChhccCCCCC
Confidence 99999998763
No 19
>4id3_A DNA repair protein REV1; BRCT domain, protein binding; HET: DNA; 1.97A {Saccharomyces cerevisiae S288C}
Probab=99.37 E-value=1.2e-12 Score=115.42 Aligned_cols=82 Identities=13% Similarity=0.152 Sum_probs=70.4
Q ss_pred cCCCeEEEEcCCCCHHHHHHHHHHHHHcCCEEeccCC---CceEEEeCCCCCcHHHHHHHHCCCCEecHHHHHHHHHhCC
Q 002369 718 DMASIQVLFSHHLDEDIIKQQKKILDRLGASEVSSIT---DATHFVTDIFVRTRNMLEAIASGKPVVTHLWLESIAQVKI 794 (930)
Q Consensus 718 ~ms~vrVlFSG~~dee~~k~LKkiIkkLGG~Vaddis---k~THLVa~k~~RT~KfL~AIA~GkpIVSp~WL~eClkagk 794 (930)
-|.+++|+|+|+.... +..++.+|+.+||.+...++ .+||||+.... +.|+.. +.|++||+|+||.+|+++++
T Consensus 7 ~f~g~~~~i~g~~~~~-~~~l~~~i~~~GG~~~~~~~~~~~~THlI~~~~~-~~K~~~--~~~~~iV~~~Wi~dci~~~~ 82 (92)
T 4id3_A 7 IFKNCVIYINGYTKPG-RLQLHEMIVLHGGKFLHYLSSKKTVTHIVASNLP-LKKRIE--FANYKVVSPDWIVDSVKEAR 82 (92)
T ss_dssp TTTTCEEEECSCCSSC-HHHHHHHHHHTTCEEESSCCCTTTCCEEECSCCC-HHHHHH--TTTSCEECTHHHHHHHHHTS
T ss_pred ccCCEEEEEeCCCCcC-HHHHHHHHHHCCCEEEEEecCCCceEEEEecCCC-HHHHHH--cCCCCEEcccHHHHHHHcCC
Confidence 4789999999976544 46789999999999999885 79999998764 566543 38999999999999999999
Q ss_pred CCCCcCccc
Q 002369 795 HIDEESYLL 803 (930)
Q Consensus 795 ~VDEe~YeL 803 (930)
++||++|.|
T Consensus 83 ~l~e~~Y~l 91 (92)
T 4id3_A 83 LLPWQNYSL 91 (92)
T ss_dssp CCCGGGGBC
T ss_pred cCChhhccc
Confidence 999999986
No 20
>2ebw_A DNA repair protein REV1; A/B/A 3 layers, parallel beta-sheet, DNA replication, translession synthesis, TLS, DNA polymerase zeta, PCNA; HET: DNA; NMR {Homo sapiens}
Probab=99.31 E-value=2.5e-12 Score=115.32 Aligned_cols=83 Identities=13% Similarity=0.217 Sum_probs=71.0
Q ss_pred ccCCCeEEEEcCCCCHHHHHHHHHHHHHcCCEEeccCC--CceEEEeCCCCCcHHHHHHHHCCCCEecHHHHHHHHHhCC
Q 002369 717 RDMASIQVLFSHHLDEDIIKQQKKILDRLGASEVSSIT--DATHFVTDIFVRTRNMLEAIASGKPVVTHLWLESIAQVKI 794 (930)
Q Consensus 717 k~ms~vrVlFSG~~dee~~k~LKkiIkkLGG~Vaddis--k~THLVa~k~~RT~KfL~AIA~GkpIVSp~WL~eClkagk 794 (930)
.-|.++.|+++|+...+ +..++++|..+||.+...+. .+||||++... +.|+..+ .+++||+|+||.+|+++|+
T Consensus 11 ~lF~g~~~~isg~~~~~-~~~L~~~i~~~GG~~~~~~~~~~~THlI~~~~~-~~k~~~~--~~~~iV~p~Wl~dci~~~~ 86 (97)
T 2ebw_A 11 TIFSGVAIYVNGYTDPS-AEELRKLMMLHGGQYHVYYSRSKTTHIIATNLP-NAKIKEL--KGEKVIRPEWIVESIKAGR 86 (97)
T ss_dssp CTTTTCEEEECSSCSSC-HHHHHHHHHHTTCEECSSCCSSSCCEEECSCCC-TTHHHHT--SSSCCBCTHHHHHHHHHTS
T ss_pred CCCCCeEEEEeCCCccc-HHHHHHHHHHcCCEEeeecCCCCCEEEEecCCC-hHHHHHh--cCCCEeChHHHHHHHHcCC
Confidence 34889999999987554 56799999999999987654 79999999863 6677654 3999999999999999999
Q ss_pred CCCCcCccc
Q 002369 795 HIDEESYLL 803 (930)
Q Consensus 795 ~VDEe~YeL 803 (930)
++|+++|.+
T Consensus 87 ~l~~~~Y~l 95 (97)
T 2ebw_A 87 LLSYIPYQL 95 (97)
T ss_dssp CCCSGGGBS
T ss_pred ccCchHcEe
Confidence 999999976
No 21
>1wf6_A Similar to S.pombe -RAD4+/CUT5+product (A40727); BRCT, topoisomerase II binding protein, checkpoint; NMR {Homo sapiens} SCOP: c.15.1.5
Probab=99.25 E-value=1.9e-11 Score=116.44 Aligned_cols=88 Identities=14% Similarity=0.235 Sum_probs=71.9
Q ss_pred cCCCeEEEEcCCCCHHHHHHHHHHHHHcCCEEeccCC-CceEEEeCCCCCcHHHHHHH-HCCCCEecHHHHHHHHHhCCC
Q 002369 718 DMASIQVLFSHHLDEDIIKQQKKILDRLGASEVSSIT-DATHFVTDIFVRTRNMLEAI-ASGKPVVTHLWLESIAQVKIH 795 (930)
Q Consensus 718 ~ms~vrVlFSG~~dee~~k~LKkiIkkLGG~Vaddis-k~THLVa~k~~RT~KfL~AI-A~GkpIVSp~WL~eClkagk~ 795 (930)
-|.+++|+|+|+.... ...++.+|+.+||.++..+. .|||||++....+.+-+.+. ..+++||+++||.+|+++|++
T Consensus 40 lF~g~~i~i~G~~~~~-~~~L~~~i~~~Gg~v~~~l~~~vTHvI~~~~~~~~~~~~~~~~~~~~iV~~~Wv~dsi~~~~l 118 (132)
T 1wf6_A 40 LLDGCRIYLCGFSGRK-LDKLRRLINSGGGVRFNQLNEDVTHVIVGDYDDELKQFWNKSAHRPHVVGAKWLLECFSKGYM 118 (132)
T ss_dssp TTTTCEEEEESCCSHH-HHHHHHHHHHTTCEEESSCCSSCCEEEESSCCSHHHHHHHHSCCCCCEEEHHHHHHHHHHSSC
T ss_pred ccCCEEEEEECCChHH-HHHHHHHHHHCCCEEeCcCCCCCeEEEECCchHHHHHHHHhhCCCCeEechHHHHHHHHcCCc
Confidence 3889999999997654 56789999999999999886 79999998743343322222 357899999999999999999
Q ss_pred CCCcCcccCCc
Q 002369 796 IDEESYLLRDT 806 (930)
Q Consensus 796 VDEe~YeL~D~ 806 (930)
+||++|.+.+.
T Consensus 119 l~e~~Y~~~~~ 129 (132)
T 1wf6_A 119 LSEEPYIHSGP 129 (132)
T ss_dssp CCSGGGBCCCS
T ss_pred CCHhhccCCCC
Confidence 99999987653
No 22
>3ef1_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, BEF3, acylphosphate analog, cobalt, magnesium; HET: BFD; 2.15A {Schizosaccharomyces pombe}
Probab=99.18 E-value=2.1e-11 Score=137.56 Aligned_cols=89 Identities=25% Similarity=0.343 Sum_probs=78.3
Q ss_pred hhhccCCCeEEEEcCCCCHH---HHHHHHHHHHHcCCEEeccCC-CceEEEeCCCCCcHHHHHHHHCC-CCEecHHHHHH
Q 002369 714 RKRRDMASIQVLFSHHLDED---IIKQQKKILDRLGASEVSSIT-DATHFVTDIFVRTRNMLEAIASG-KPVVTHLWLES 788 (930)
Q Consensus 714 r~rk~ms~vrVlFSG~~dee---~~k~LKkiIkkLGG~Vaddis-k~THLVa~k~~RT~KfL~AIA~G-kpIVSp~WL~e 788 (930)
.+++-+.+++|+|||+.+.. ....++.++..|||.++.+++ .||||||... +|.||..|...| +|||+++||.+
T Consensus 348 ~k~~~L~G~~IvfSG~~p~~~~~~r~~l~~~~~~lGa~~~~~vs~~vTHLVa~~~-~t~K~~~A~~~g~IkIVs~~WL~d 426 (442)
T 3ef1_A 348 MKQKVLKGCRLLFSGVIPLGVDVLSSDIAKWAMSFGAEVVLDFSVPPTHLIAAKI-RTEKVKKAVSMGNIKVVKLNWLTE 426 (442)
T ss_dssp HHHTTSTTCEEEEESSSCTTSCSTTSHHHHHHHTTTCEECSSSSSCCSEEEECSC-CCHHHHHHHHHSSSEEEEHHHHHH
T ss_pred HhhcccCCcEEEEecccCCCCCccHHHHHHHHHHcCCEEeCCCCCCceEEEeCCC-CCHHHHHHHhcCCCEEEeHHHHHH
Confidence 45567999999999987432 124578899999999999998 8999999975 699999999984 99999999999
Q ss_pred HHHhCCCCCCcCccc
Q 002369 789 IAQVKIHIDEESYLL 803 (930)
Q Consensus 789 Clkagk~VDEe~YeL 803 (930)
|++.++.+||.+|.|
T Consensus 427 cl~~~krldE~~YlL 441 (442)
T 3ef1_A 427 SLSQWKRLPESDYLL 441 (442)
T ss_dssp HHHHTSCCCGGGTBC
T ss_pred HHHcCCcCChhcccc
Confidence 999999999999986
No 23
>3ef0_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, ALF4, transition state analog, cobalt, magnesium; 2.10A {Schizosaccharomyces pombe}
Probab=99.18 E-value=2.9e-11 Score=133.80 Aligned_cols=88 Identities=24% Similarity=0.329 Sum_probs=77.3
Q ss_pred hhccCCCeEEEEcCCCCHH---HHHHHHHHHHHcCCEEeccCC-CceEEEeCCCCCcHHHHHHHHC-CCCEecHHHHHHH
Q 002369 715 KRRDMASIQVLFSHHLDED---IIKQQKKILDRLGASEVSSIT-DATHFVTDIFVRTRNMLEAIAS-GKPVVTHLWLESI 789 (930)
Q Consensus 715 ~rk~ms~vrVlFSG~~dee---~~k~LKkiIkkLGG~Vaddis-k~THLVa~k~~RT~KfL~AIA~-GkpIVSp~WL~eC 789 (930)
+++-+.+++|+|||+.+.. ....++.++..|||.++.+++ .+|||||... .|.|+..|... |++||+++||.+|
T Consensus 279 k~~~L~G~~ivfSG~~~~~~~~~~~~l~~l~~~lGa~v~~~vs~~vTHLVa~~~-~t~K~~~A~~~~~I~IV~~~Wl~~c 357 (372)
T 3ef0_A 279 KQKVLKGCRLLFSGVIPLGVDVLSSDIAKWAMSFGAEVVLDFSVPPTHLIAAKI-RTEKVKKAVSMGNIKVVKLNWLTES 357 (372)
T ss_dssp HTTTSTTCEEEEESSSCTTSCTTTSHHHHHHHHTTCEEESSSSSCCSEEEECSC-CCHHHHHHHHSSSCCEEEHHHHHHH
T ss_pred HhhhcCCcEEEEecccCCCcchhHHHHHHHHHHcCCEEeCcCCCCceEEEEcCC-CchHHHHHHhcCCCEEEcHHHHHHH
Confidence 3456999999999987432 124578899999999999998 8999999975 69999999998 7999999999999
Q ss_pred HHhCCCCCCcCccc
Q 002369 790 AQVKIHIDEESYLL 803 (930)
Q Consensus 790 lkagk~VDEe~YeL 803 (930)
++.++.+||.+|.+
T Consensus 358 ~~~~~~vdE~~Y~l 371 (372)
T 3ef0_A 358 LSQWKRLPESDYLL 371 (372)
T ss_dssp HHTTSCCCGGGGBC
T ss_pred HHhCCcCChhhcee
Confidence 99999999999976
No 24
>3pa6_A Microcephalin; BRCT domain, cell cycle; HET: MSE; 1.50A {Homo sapiens} PDB: 3ktf_A* 2wt8_A*
Probab=99.17 E-value=4.2e-11 Score=111.46 Aligned_cols=88 Identities=19% Similarity=0.219 Sum_probs=73.9
Q ss_pred cCCCeEEEEcCCCC---HHHHHHHHHHHHHcCCEEeccCC-CceEEEeCCCCCcHHHHHHHHCCCCEecHHHHHHHHHhC
Q 002369 718 DMASIQVLFSHHLD---EDIIKQQKKILDRLGASEVSSIT-DATHFVTDIFVRTRNMLEAIASGKPVVTHLWLESIAQVK 793 (930)
Q Consensus 718 ~ms~vrVlFSG~~d---ee~~k~LKkiIkkLGG~Vaddis-k~THLVa~k~~RT~KfL~AIA~GkpIVSp~WL~eClkag 793 (930)
-|.+++|+|..... +...+.+..+++.|||.|++++. .+||||+.... +.++-.|...|++||+++||.+|+++|
T Consensus 7 ~f~g~vvyvd~~~~~g~~~~s~~l~~~l~~~GA~v~~~l~~~vTHvV~~~~~-~~~~~~A~~~~i~iV~~~Wv~~C~~~~ 85 (107)
T 3pa6_A 7 ILKDVVAYVEVWSSNGTENYSKTFTTQLVDMGAKVSKTFNKQVTHVIFKDGY-QSTWDKAQKRGVKLVSVLWVEKCRTAG 85 (107)
T ss_dssp TTTTCEEEEEEBCTTSCCBCHHHHHHHHHHTTCEECSSCCTTCCEEEEESCC-HHHHHHHHHHTCEEECHHHHHHHHHHT
T ss_pred ccCCEEEEEeccCCCChhhHHHHHHHHHHHcCCEEecccCCCccEEEEeCCC-ChHHHHHhcCCCEEECHHHHHHHHHhC
Confidence 37889998866541 11234578899999999999998 79999997653 677888999999999999999999999
Q ss_pred CCCCCcCcccCCc
Q 002369 794 IHIDEESYLLRDT 806 (930)
Q Consensus 794 k~VDEe~YeL~D~ 806 (930)
+.+||++|.+.++
T Consensus 86 ~~vdE~~Y~i~~~ 98 (107)
T 3pa6_A 86 AHIDESLFPAANM 98 (107)
T ss_dssp SCCCGGGSBCCCT
T ss_pred ccCChhcccCCCC
Confidence 9999999998764
No 25
>3olc_X DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, RAD9, DNA binding protein; HET: DNA; 2.40A {Homo sapiens} PDB: 2xnk_A* 2xnh_A*
Probab=99.17 E-value=6.1e-11 Score=127.30 Aligned_cols=89 Identities=12% Similarity=0.079 Sum_probs=80.5
Q ss_pred hccCCCeEEEEcCCCCHHHHHHHHHHHHHcCCEEeccCC--CceEEEeCCCCCcHHHHHHHHCCCCEecHHHHHHHHHhC
Q 002369 716 RRDMASIQVLFSHHLDEDIIKQQKKILDRLGASEVSSIT--DATHFVTDIFVRTRNMLEAIASGKPVVTHLWLESIAQVK 793 (930)
Q Consensus 716 rk~ms~vrVlFSG~~dee~~k~LKkiIkkLGG~Vaddis--k~THLVa~k~~RT~KfL~AIA~GkpIVSp~WL~eClkag 793 (930)
.+-+.++.|+|||+.+. .+..++.+|..+||.++.+++ .|||||+... .+.||..|...|+|||+++||.+|++.|
T Consensus 197 ~~~f~g~~i~~tG~~~~-~r~~l~~li~~~GG~~~~~ls~~~~THLI~~~~-~g~K~~~A~~~gi~IV~~~Wl~dsi~~g 274 (298)
T 3olc_X 197 CPIFLGCIICVTGLCGL-DRKEVQQLTVKHGGQYMGQLKMNECTHLIVQEP-KGQKYECAKRWNVHCVTTQWFFDSIEKG 274 (298)
T ss_dssp CCTTTTCEEEECSCCHH-HHHHHHHHHHHTTCEECSSCCTTTCCEEECSSS-CSHHHHHHHHTTCEEECHHHHHHHHHHT
T ss_pred ccccCCeEEEEeCCCCc-cHHHHHHHHHHcCCEEeceecCCCceEEEEeCC-CchHHHHHHHCCCeEEeHHHHHHHHHCC
Confidence 45689999999999765 467899999999999999987 6999999987 4899999999999999999999999999
Q ss_pred CCCCCcCcccCCc
Q 002369 794 IHIDEESYLLRDT 806 (930)
Q Consensus 794 k~VDEe~YeL~D~ 806 (930)
.++||++|.+...
T Consensus 275 ~~lde~~Y~l~~~ 287 (298)
T 3olc_X 275 FCQDESIYKTEPR 287 (298)
T ss_dssp SCCCGGGSBSCC-
T ss_pred CCCCchhcCCCCC
Confidence 9999999998764
No 26
>3pc6_A DNA repair protein XRCC1; BRCT domain, protein:protein interactions, DNA L III-alpha BRCT2 domain, DNA binding protein; HET: DNA; 1.90A {Mus musculus} SCOP: c.15.1.1 PDB: 3pc8_A* 3qvg_B* 1cdz_A
Probab=99.02 E-value=9.2e-10 Score=102.29 Aligned_cols=86 Identities=10% Similarity=0.118 Sum_probs=74.8
Q ss_pred CCCeEEEEcCCCCHHHHHHHHHHHHHcCCEEeccCC-CceEEEeCCCCCcHHHHHHHH--CCCCEecHHHHHHHHHhCCC
Q 002369 719 MASIQVLFSHHLDEDIIKQQKKILDRLGASEVSSIT-DATHFVTDIFVRTRNMLEAIA--SGKPVVTHLWLESIAQVKIH 795 (930)
Q Consensus 719 ms~vrVlFSG~~dee~~k~LKkiIkkLGG~Vaddis-k~THLVa~k~~RT~KfL~AIA--~GkpIVSp~WL~eClkagk~ 795 (930)
|.+++|+|++..+...++.+...|.++||.|.+..+ ++||+|+++. .+.+|..|.. -++.+|+|+||.+|++++++
T Consensus 8 F~g~~f~l~~~~p~~~r~~l~ryiia~GG~v~~~~~~~vTHvIt~~~-~d~~~~~a~~~~p~~~~V~P~WI~~Ci~~~kl 86 (104)
T 3pc6_A 8 FEGKHFFLYGEFPGDERRRLIRYVTAFNGELEDYMNERVQFVITAQE-WDPNFEEALMENPSLAFVRPRWIYSCNEKQKL 86 (104)
T ss_dssp TTTCEEEEESCCSTTHHHHHHHHHHHTTCEECSSCCTTCCEEEESSC-CCHHHHHHHTTCTTCEEECHHHHHHHHHHTSC
T ss_pred hCCeEEEEcCCCcHHHHHHHHHHHHHcCCEEEcccCCCceEEEeCCC-CChhHHHHhhhCCCCeEEccHHHHHHHhcCcc
Confidence 789999999988544567889999999999988775 8999999987 5888887775 36899999999999999999
Q ss_pred CCCcCcccCC
Q 002369 796 IDEESYLLRD 805 (930)
Q Consensus 796 VDEe~YeL~D 805 (930)
|++++|++..
T Consensus 87 vp~~~y~~~~ 96 (104)
T 3pc6_A 87 LPHQLYGVVP 96 (104)
T ss_dssp CCGGGGBCCC
T ss_pred CCcccceecc
Confidence 9999998764
No 27
>2ebw_A DNA repair protein REV1; A/B/A 3 layers, parallel beta-sheet, DNA replication, translession synthesis, TLS, DNA polymerase zeta, PCNA; HET: DNA; NMR {Homo sapiens}
Probab=98.73 E-value=2e-08 Score=89.93 Aligned_cols=88 Identities=17% Similarity=0.285 Sum_probs=66.7
Q ss_pred CCCCCCCceEEEeCCCCCCHHHHHHHHHhCCcEEEeccCcccccCCCCCCcEEEEecCCchhccHHHHhcCCeEEeHHHH
Q 002369 825 KHPLLKDQRVLITPNIKPSKETISSLIKSVHGQAVERLGRSALKDDKLPDDLLILSCEEDYEICEPFLEKGAAVYSSELL 904 (930)
Q Consensus 825 k~~LFkG~rfyItp~vkPske~L~~LIeagGGkVV~~~prs~lKd~~~pd~~IVISceeD~~~~~~ll~~Gi~VVSsEWI 904 (930)
..++|+|+.|||++...++++.|+.+|+..||.+...... ..-.+||+...+...+..+ .+++||+++||
T Consensus 9 ~~~lF~g~~~~isg~~~~~~~~L~~~i~~~GG~~~~~~~~--------~~~THlI~~~~~~~k~~~~--~~~~iV~p~Wl 78 (97)
T 2ebw_A 9 SSTIFSGVAIYVNGYTDPSAEELRKLMMLHGGQYHVYYSR--------SKTTHIIATNLPNAKIKEL--KGEKVIRPEWI 78 (97)
T ss_dssp CCCTTTTCEEEECSSCSSCHHHHHHHHHHTTCEECSSCCS--------SSCCEEECSCCCTTHHHHT--SSSCCBCTHHH
T ss_pred CCCCCCCeEEEEeCCCcccHHHHHHHHHHcCCEEeeecCC--------CCCEEEEecCCChHHHHHh--cCCCEeChHHH
Confidence 3579999999999877788999999999999998654321 1234777665433333332 28999999999
Q ss_pred HHHHhccc-cccccccccc
Q 002369 905 LNGMVTQK-LEYERYYMFI 922 (930)
Q Consensus 905 LdSIL~Qk-Le~E~y~Lf~ 922 (930)
++||-.++ |+++.|.|+.
T Consensus 79 ~dci~~~~~l~~~~Y~l~~ 97 (97)
T 2ebw_A 79 VESIKAGRLLSYIPYQLYT 97 (97)
T ss_dssp HHHHHHTSCCCSGGGBSCC
T ss_pred HHHHHcCCccCchHcEecC
Confidence 99999765 7889998873
No 28
>3huf_A DNA repair and telomere maintenance protein NBS1; NBS1, FHA domain, BRCT domain, phosphoprotein binding, phosp binding, DNA repair; HET: DNA TPO; 2.15A {Schizosaccharomyces pombe} PDB: 3hue_A* 3i0m_A* 3i0n_A*
Probab=98.73 E-value=4.9e-08 Score=106.00 Aligned_cols=175 Identities=15% Similarity=0.120 Sum_probs=104.1
Q ss_pred CCeEEEEcCCCCHHHHHHHHHHHHHcCCEEeccC-C-CceEEEeCC---CCCcHHHHHHHHCCCCEecHHHHHHHHHhCC
Q 002369 720 ASIQVLFSHHLDEDIIKQQKKILDRLGASEVSSI-T-DATHFVTDI---FVRTRNMLEAIASGKPVVTHLWLESIAQVKI 794 (930)
Q Consensus 720 s~vrVlFSG~~dee~~k~LKkiIkkLGG~Vaddi-s-k~THLVa~k---~~RT~KfL~AIA~GkpIVSp~WL~eClkagk 794 (930)
..+.++||. .+.+.++.+.++.|||.++ ++ . +||||||.+ .+-|.|.|+|+..|+|||+++||.+......
T Consensus 114 ~P~Vl~~Ss---ke~~~~L~~~L~~LGik~v-~~~~detTHlVm~krnT~KvTvK~L~ALI~gkPIV~~~Fl~al~~~e~ 189 (325)
T 3huf_A 114 RSMCIQFDN---PEMLSQWASNLNLLGIPTG-LRDSDATTHFVMNRQAGSSITVGTMYAFLKKTVIIDDSYLQYLSTVKE 189 (325)
T ss_dssp CCCCEEESC---HHHHHHHHHHHHTTTCCEE-SSCCTTCCEEECCCCCSSCCCHHHHHHHHTTCEEECHHHHHHHTTCTT
T ss_pred eeeEEEecC---HHHHHHHHHHHHHcCCEEE-EccCCCEEEEEEeccccccchHHHHHHHHCCCcEecHHHHHHHHHhhh
Confidence 345567742 3334568899999999999 77 3 699999974 4558999999999999999999999865321
Q ss_pred --------CCCCcCcccCC-chhhhhcCCCchHHhhhccCCCCCCCceEEEeCCCCCCHHHHHHHHHhCCcEEEeccCcc
Q 002369 795 --------HIDEESYLLRD-TKKEKEFGFSMPASLARARKHPLLKDQRVLITPNIKPSKETISSLIKSVHGQAVERLGRS 865 (930)
Q Consensus 795 --------~VDEe~YeL~D-~e~Eke~GfsL~~SL~rArk~~LFkG~rfyItp~vkPske~L~~LIeagGGkVV~~~prs 865 (930)
|-++.+|...- ...| .-..-+..+ .+-|+|+++++.... -++..|+++.|=++.....--
T Consensus 190 ~~~~~~~~wPdp~dflP~i~~g~E--p~~~~~~~~-----~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 258 (325)
T 3huf_A 190 SVIEDASLMPDALECFKNIIKNND--QFPSSPEDC-----INSLEGFSCAMLNTS----SESHHLLELLGLRISTFMSLG 258 (325)
T ss_dssp CCCCTTSSHHHHHHHHHHHHTTCT--TCCSCHHHH-----TTTTTTCEEEEETCC----HHHHHHHHHTTCEEEEEC---
T ss_pred hhhhcccCCCChHHcCCCCCCCCC--CCCCCHHHh-----hcccCceEEEEEcCc----hhhhHHHHHhcceeeeeeecc
Confidence 11222332210 0001 000111111 467999998887543 588999999999988764210
Q ss_pred -cccCCCCCCcEEEEecCCchhccHHHHhcCCeEEeHHHHHHHHhc
Q 002369 866 -ALKDDKLPDDLLILSCEEDYEICEPFLEKGAAVYSSELLLNGMVT 910 (930)
Q Consensus 866 -~lKd~~~pd~~IVISceeD~~~~~~ll~~Gi~VVSsEWILdSIL~ 910 (930)
+-++--...+++|+ ...-+..-.--...|+.|++.|-+|.-|+.
T Consensus 259 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (325)
T 3huf_A 259 DIDKELISKTDFVVL-NNAVYDSEKISFPEGIFCLTIEQLWKIIIE 303 (325)
T ss_dssp ---CCSSSSCSEEEE-C-------------CCCEEEHHHHHHHHHS
T ss_pred cchHhhhccccEEEE-cccccccccccCCcceEEEEHHHHHHHHhh
Confidence 11110112234443 332222111112358999999999998773
No 29
>4id3_A DNA repair protein REV1; BRCT domain, protein binding; HET: DNA; 1.97A {Saccharomyces cerevisiae S288C}
Probab=98.71 E-value=3.9e-08 Score=86.41 Aligned_cols=86 Identities=14% Similarity=0.197 Sum_probs=64.2
Q ss_pred CCCCCCceEEEeCCCCCCHHHHHHHHHhCCcEEEeccCcccccCCCCCCcEEEEecCCchhccHHHHhcCCeEEeHHHHH
Q 002369 826 HPLLKDQRVLITPNIKPSKETISSLIKSVHGQAVERLGRSALKDDKLPDDLLILSCEEDYEICEPFLEKGAAVYSSELLL 905 (930)
Q Consensus 826 ~~LFkG~rfyItp~vkPske~L~~LIeagGGkVV~~~prs~lKd~~~pd~~IVISceeD~~~~~~ll~~Gi~VVSsEWIL 905 (930)
..+|+|+.|||++...++++.|+.+|+.+||+++...... +.-.+||.......... ...+++||+++||+
T Consensus 5 ~~~f~g~~~~i~g~~~~~~~~l~~~i~~~GG~~~~~~~~~-------~~~THlI~~~~~~~K~~--~~~~~~iV~~~Wi~ 75 (92)
T 4id3_A 5 SKIFKNCVIYINGYTKPGRLQLHEMIVLHGGKFLHYLSSK-------KTVTHIVASNLPLKKRI--EFANYKVVSPDWIV 75 (92)
T ss_dssp -CTTTTCEEEECSCCSSCHHHHHHHHHHTTCEEESSCCCT-------TTCCEEECSCCCHHHHH--HTTTSCEECTHHHH
T ss_pred ccccCCEEEEEeCCCCcCHHHHHHHHHHCCCEEEEEecCC-------CceEEEEecCCCHHHHH--HcCCCCEEcccHHH
Confidence 4799999999998777889999999999999998765310 12347776654433211 12689999999999
Q ss_pred HHHhccc-cccccccc
Q 002369 906 NGMVTQK-LEYERYYM 920 (930)
Q Consensus 906 dSIL~Qk-Le~E~y~L 920 (930)
+||-..+ |+.+.|.|
T Consensus 76 dci~~~~~l~e~~Y~l 91 (92)
T 4id3_A 76 DSVKEARLLPWQNYSL 91 (92)
T ss_dssp HHHHHTSCCCGGGGBC
T ss_pred HHHHcCCcCChhhccc
Confidence 9999755 67777765
No 30
>2d8m_A DNA-repair protein XRCC1; parallel beta-sheet, DNA ligase III, poly(ADP-ribose) polymerase-1, DNA polymerase beta, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.48 E-value=3.8e-07 Score=86.54 Aligned_cols=91 Identities=14% Similarity=0.139 Sum_probs=71.3
Q ss_pred CCCCCCceEEEeCCCCCCHHHHHHHHHhCCcEEEeccCcccccCCCCCCcEEEEecCCchhccHHHHhcCCeEEeHHHHH
Q 002369 826 HPLLKDQRVLITPNIKPSKETISSLIKSVHGQAVERLGRSALKDDKLPDDLLILSCEEDYEICEPFLEKGAAVYSSELLL 905 (930)
Q Consensus 826 ~~LFkG~rfyItp~vkPske~L~~LIeagGGkVV~~~prs~lKd~~~pd~~IVISceeD~~~~~~ll~~Gi~VVSsEWIL 905 (930)
..+|.|+.|+|++...+.+..|..+|+..||+|...... ...+||........+....+.|++||+++||+
T Consensus 20 ~~~f~g~~i~itG~~~~~r~~l~~~i~~~Gg~v~~~~s~---------~~ThLI~~~~~~~K~~~A~~~gi~IV~~~Wl~ 90 (129)
T 2d8m_A 20 GKILQGVVVVLSGFQNPFRSELRDKALELGAKYRPDWTR---------DSTHLICAFANTPKYSQVLGLGGRIVRKEWVL 90 (129)
T ss_dssp TTTSTTEEEEEESCCTTHHHHHHHHHHHTTEEEESSCCT---------TCCEEEESSSSCHHHHHHHHHTCEEEETHHHH
T ss_pred cccCCCeEEEEeCCCcHHHHHHHHHHHHcCCEEeCCcCC---------CCeEEEecCCCChHHHHHHHCCCcEecHHHHH
Confidence 468999999999988777999999999999999876432 12466665444444555566899999999999
Q ss_pred HHHhcc-cccccccccccccc
Q 002369 906 NGMVTQ-KLEYERYYMFIVLF 925 (930)
Q Consensus 906 dSIL~Q-kLe~E~y~Lf~d~v 925 (930)
+|+-.. .|+++.|.|..+.-
T Consensus 91 d~~~~~~~l~e~~Y~l~~~~~ 111 (129)
T 2d8m_A 91 DCHRMRRRLPSQRYLMAGPGS 111 (129)
T ss_dssp HHHHTTSCCCGGGGBCSSSSC
T ss_pred HHHHhCCcCChHhcccCCCCc
Confidence 999874 47889998876643
No 31
>3l46_A Protein ECT2; alternative splicing, guanine-nucleotide releasing factor, phosphoprotein, polymorphism, proto-oncogene, structural genomics; 1.48A {Homo sapiens}
Probab=98.48 E-value=1.1e-07 Score=89.34 Aligned_cols=88 Identities=11% Similarity=0.013 Sum_probs=65.6
Q ss_pred CCCCCCceEEEeCCCCCCHHHHHHHHHhCCcEEEeccCcccccCCCCCCcEEEEecCCchhccHHHHhcCCeEEeHHHHH
Q 002369 826 HPLLKDQRVLITPNIKPSKETISSLIKSVHGQAVERLGRSALKDDKLPDDLLILSCEEDYEICEPFLEKGAAVYSSELLL 905 (930)
Q Consensus 826 ~~LFkG~rfyItp~vkPske~L~~LIeagGGkVV~~~prs~lKd~~~pd~~IVISceeD~~~~~~ll~~Gi~VVSsEWIL 905 (930)
.++|.|++||+++.....+..|+.+|+..||.+...... .-.+||..+.+...+....+.+++||++|||+
T Consensus 19 ~p~F~g~~Ic~sGf~~~er~~l~~~i~~~GG~~~~~l~~---------~cTHLV~~~~~~~K~~~A~~~~i~IVs~eWl~ 89 (112)
T 3l46_A 19 VPPFQDCILSFLGFSDEEKTNMEEMTEMQGGKYLPLGDE---------RCTHLVVEENIVKDLPFEPSKKLYVVKQEWFW 89 (112)
T ss_dssp CCTTTTCEECEESCCHHHHHHHHHHHHHTTCEECCTTCT---------TCSEEEECTTTBSSCSSCCCSSCEEEEHHHHH
T ss_pred CCccCCeEEEEeCCCHHHHHHHHHHHHHcCCEECcccCC---------CceEEEecCCchhhHHHHHHCCeeEecHHHHH
Confidence 579999999999977666889999999999999875422 22466665544444444456799999999999
Q ss_pred HHHhccccccccccccc
Q 002369 906 NGMVTQKLEYERYYMFI 922 (930)
Q Consensus 906 dSIL~QkLe~E~y~Lf~ 922 (930)
+||-...+-.|..|+++
T Consensus 90 dsi~~g~~ldE~~Y~~~ 106 (112)
T 3l46_A 90 GSIQMDARAGETMYLYE 106 (112)
T ss_dssp HHHHHTSCCCGGGSBCC
T ss_pred HHHHcCCccChhhceec
Confidence 99998765555444443
No 32
>2jw5_A DNA polymerase lambda; BRCT domain, family X polymerase, nonhomologous END joining (NHEJ), DNA damage, DNA repair, DNA replication, DNA synthesis; HET: DNA; NMR {Homo sapiens}
Probab=98.44 E-value=5.3e-08 Score=90.29 Aligned_cols=67 Identities=21% Similarity=0.328 Sum_probs=52.7
Q ss_pred HHHHHHHcCCEEeccCC-CceEEEeCC---CCCcHHHHHH--HHCCCCEecHHHHHHHHHhCCCCCCcCcccC
Q 002369 738 QKKILDRLGASEVSSIT-DATHFVTDI---FVRTRNMLEA--IASGKPVVTHLWLESIAQVKIHIDEESYLLR 804 (930)
Q Consensus 738 LKkiIkkLGG~Vaddis-k~THLVa~k---~~RT~KfL~A--IA~GkpIVSp~WL~eClkagk~VDEe~YeL~ 804 (930)
....++.+||.|++++. .+||+|++. ..+.++.|.+ +..++.||+++||.+|++++++|||+.|.+.
T Consensus 32 ~~~~a~~~Ga~v~~~~~~~vTHVVvd~~~s~~~~l~~l~~~~l~~~~~iV~~~Wv~dci~~~~llde~~y~~~ 104 (106)
T 2jw5_A 32 FEKQIVQHGGQLCPAQGPGVTHIVVDEGMDYERALRLLRLPQLPPGAQLVKSAWLSLCLQERRLVDVAGFSIF 104 (106)
T ss_dssp HHHHHHHTTCCCCSTTCTTCCEEEECSSSCHHHHHHHTTCSSCCSSCEEEEHHHHHHHHHTCSCCCGGGTBCS
T ss_pred HHHHHHHcCCEEeeccCCCccEEEEcCCCCHHHHHHHHhhcccCCCcEEecCchHHHHHhcCcccCccccccc
Confidence 45578889999999986 899999984 2334444542 3345579999999999999999999999653
No 33
>3ii6_X DNA ligase 4; XRCC4, NHEJ, DNA repair, BRCT, alternative splicing, coiled coil, DNA damage, DNA recombination, isopeptide bond, nucleus; HET: DNA; 2.40A {Homo sapiens} PDB: 2e2w_A*
Probab=98.40 E-value=7e-07 Score=94.11 Aligned_cols=85 Identities=15% Similarity=0.147 Sum_probs=63.5
Q ss_pred cCCCeEEEEcCCCC---------HHHHHHHHHHHHHcCCEEeccCC-CceEEEeCCC-CCcHHHHHHHH----CCCCEec
Q 002369 718 DMASIQVLFSHHLD---------EDIIKQQKKILDRLGASEVSSIT-DATHFVTDIF-VRTRNMLEAIA----SGKPVVT 782 (930)
Q Consensus 718 ~ms~vrVlFSG~~d---------ee~~k~LKkiIkkLGG~Vaddis-k~THLVa~k~-~RT~KfL~AIA----~GkpIVS 782 (930)
=+.+++|.|-++.. ......++..|..+||.+++.++ .+||||++.. .|. ..+.++. .++.||+
T Consensus 164 lF~~~~vy~~~~~~~~~~~~~i~~~~l~~~~~~i~~~GG~v~~~l~~~vTHVVv~~~~~r~-~~~~~~~~~~~~~~~iV~ 242 (263)
T 3ii6_X 164 MFRRHTVYLDSYAVINDLSTKNEGTRLAIKALELRFHGAKVVSCLAEGVSHVIIGEDHSRV-ADFKAFRRTFKRKFKILK 242 (263)
T ss_dssp TTTTCEEEECCBSSTTCGGGBCCSSHHHHHHHHHHHTTCEEESSCCTTCCEEEECSCCTTH-HHHHHHHHTCSSCCEEEE
T ss_pred hhCCeEEEEecccccCCcccccchhHHHHHHHHHHccCCEEecCCCCCceEEEECCCCccH-HHHHHHHhhcCCCCEEeC
Confidence 47889999955421 11233457789999999999998 5999999863 232 2333433 4668999
Q ss_pred HHHHHHHHHhCCCCCCcCccc
Q 002369 783 HLWLESIAQVKIHIDEESYLL 803 (930)
Q Consensus 783 p~WL~eClkagk~VDEe~YeL 803 (930)
++||.+|+++|+++||++|.+
T Consensus 243 ~~Wv~dci~~~~~l~E~~Y~i 263 (263)
T 3ii6_X 243 ESWVTDSIDKCELQEENQYLI 263 (263)
T ss_dssp THHHHHHHHTTSCCCGGGTBC
T ss_pred hHHHHHHHHcCCcCCHhhCCC
Confidence 999999999999999999964
No 34
>1l7b_A DNA ligase; BRCT, autostructure, structural genomics, NESG, PSI, protein structure initiative, northeast structural genomics consortium; HET: DNA; NMR {Thermus thermophilus} SCOP: c.15.1.2
Probab=98.39 E-value=3.2e-07 Score=83.37 Aligned_cols=73 Identities=21% Similarity=0.259 Sum_probs=64.9
Q ss_pred cCCCeEEEEcCCCCHHHHHHHHHHHHHcCCEEeccCC-CceEEEeCCCCCcHHHHHHHHCCCCEecHHHHHHHHHh
Q 002369 718 DMASIQVLFSHHLDEDIIKQQKKILDRLGASEVSSIT-DATHFVTDIFVRTRNMLEAIASGKPVVTHLWLESIAQV 792 (930)
Q Consensus 718 ~ms~vrVlFSG~~dee~~k~LKkiIkkLGG~Vaddis-k~THLVa~k~~RT~KfL~AIA~GkpIVSp~WL~eClka 792 (930)
.+.+..|+|||..+. .+..++.+|+.+||.|+.+++ ++||||++.-. +-|+-.|...|+|||+.+|+.+++..
T Consensus 7 ~l~G~~~v~TG~l~~-~R~e~~~~i~~~Gg~v~~sVskkt~~LV~g~~~-gsK~~kA~~lgI~Ii~E~~f~~~l~~ 80 (92)
T 1l7b_A 7 ALKGLTFVITGELSR-PREEVKALLRRLGAKVTDSVSRKTSYLVVGENP-GSKLEKARALGVPTLTEEELYRLLEA 80 (92)
T ss_dssp SSTTCEEECSTTTTS-CHHHHHHHHHHTTCEEESCCSSSCCCBEECSSS-STTHHHHHCSSSCCEEHHHHHHHHHH
T ss_pred CcCCcEEEEecCCCC-CHHHHHHHHHHcCCEEeCcccCCeeEEEeCCCC-ChHHHHHHHcCCcEEeHHHHHHHHHh
Confidence 378999999998866 567889999999999999998 79999999743 68999999999999999999998863
No 35
>2k6g_A Replication factor C subunit 1; protein, BRCT, DNA binding, activator, alternative splicing, ATP-binding, DNA replication, DNA- binding; NMR {Homo sapiens} PDB: 2k7f_A
Probab=98.38 E-value=9.3e-07 Score=82.72 Aligned_cols=76 Identities=12% Similarity=0.130 Sum_probs=66.1
Q ss_pred cCCCeEEEEcCCCCHHHHHHHHHHHHHcCCEEeccCC-CceEEEeCCCCCcHHHHHHHHCCCCEecHHHHHHHHHhC
Q 002369 718 DMASIQVLFSHHLDEDIIKQQKKILDRLGASEVSSIT-DATHFVTDIFVRTRNMLEAIASGKPVVTHLWLESIAQVK 793 (930)
Q Consensus 718 ~ms~vrVlFSG~~dee~~k~LKkiIkkLGG~Vaddis-k~THLVa~k~~RT~KfL~AIA~GkpIVSp~WL~eClkag 793 (930)
.+.+..|+|||..+.-.+.+++.+|+.+||.|+.+++ +++|||++.-..+-|+-.|...|++||+.+|+.+.+..+
T Consensus 32 ~l~G~~~v~TG~l~~~~R~e~~~~i~~~Gg~v~~sVSkkTd~LV~G~~~g~sK~~kA~~lgI~Ii~E~~f~~ll~~~ 108 (109)
T 2k6g_A 32 CLEGLIFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAALGTKIIDEDGLLNLIRNL 108 (109)
T ss_dssp TTTTCEEEEESBCSSCCHHHHHHHHHHTTCEEESSCCTTCCEEEECBCCCHHHHHHHHHHTCEEECHHHHHHHHHHT
T ss_pred CCCCCEEEEeeeCCCCCHHHHHHHHHHcCCEeeCcccCCceEEEECCCCChHHHHHHHHcCCeEEeHHHHHHHHHhC
Confidence 4889999999987543356788999999999999998 799999987544589999999999999999999998765
No 36
>2ebu_A Replication factor C subunit 1; A/B/A 3 layers, parallel beta-sheet, DNA replication, clamp loader, RFC1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.38 E-value=9.9e-07 Score=83.06 Aligned_cols=76 Identities=12% Similarity=0.142 Sum_probs=66.5
Q ss_pred cCCCeEEEEcCCCCHHHHHHHHHHHHHcCCEEeccCC-CceEEEeCCCCCcHHHHHHHHCCCCEecHHHHHHHHHhC
Q 002369 718 DMASIQVLFSHHLDEDIIKQQKKILDRLGASEVSSIT-DATHFVTDIFVRTRNMLEAIASGKPVVTHLWLESIAQVK 793 (930)
Q Consensus 718 ~ms~vrVlFSG~~dee~~k~LKkiIkkLGG~Vaddis-k~THLVa~k~~RT~KfL~AIA~GkpIVSp~WL~eClkag 793 (930)
.+.+..|+|||....-.+.+++.+|+.+||.|+.+++ +++|||++.-..+-|+-.|...|++||+.+|+.+.+..+
T Consensus 22 ~l~G~~~v~TG~l~~~~R~e~~~~i~~~Ggkv~~sVSkkTd~LV~G~~~g~sKl~KA~~lgI~IisE~~f~~ll~~~ 98 (112)
T 2ebu_A 22 CLEGLIFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAALGTKIIDEDGLLNLIRTM 98 (112)
T ss_dssp SSTTCEEEECSCCSSSCHHHHHHHHHHTTCEECSSCCSSCCEEEECSSCCSHHHHHHHHHTCEEEEHHHHHHHHHHS
T ss_pred CcCCCEEEEeeeCCCCCHHHHHHHHHHcCCEEeccccCCeeEEEecCCCChHHHHHHHHcCCeEEeHHHHHHHHhhC
Confidence 4889999999987543356789999999999999998 799999997555689999999999999999999999854
No 37
>2ep8_A Pescadillo homolog 1; A/B/A 3 layers, nucleolus, ribosome biogenesis, DNA damage, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.37 E-value=4.9e-07 Score=83.27 Aligned_cols=76 Identities=12% Similarity=0.228 Sum_probs=60.1
Q ss_pred CCCeEEEEcCCCCHHHHHHHHHHHHHcCCEEeccC------------CCceEEEeCCCCCcHHHHHHHHCCCCEecHHHH
Q 002369 719 MASIQVLFSHHLDEDIIKQQKKILDRLGASEVSSI------------TDATHFVTDIFVRTRNMLEAIASGKPVVTHLWL 786 (930)
Q Consensus 719 ms~vrVlFSG~~dee~~k~LKkiIkkLGG~Vaddi------------sk~THLVa~k~~RT~KfL~AIA~GkpIVSp~WL 786 (930)
+.++.++++.-.+. ..++.+|+.+||.|..+. ...||+|+++..-. + ...+..||.|+||
T Consensus 13 F~g~~F~i~~e~p~---~~le~~I~~~GG~v~~~~~~~~g~~~~~~~~~iTh~I~drp~~~-~----~~~~r~~VqPqWV 84 (100)
T 2ep8_A 13 FEGLKFFLNREVPR---EALAFIIRSFGGEVSWDKSLCIGATYDVTDSRITHQIVDRPGQQ-T----SVIGRCYVQPQWV 84 (100)
T ss_dssp TSSCEEECCSSSCH---HHHHHHHHHTTCEEECCTTTSSCCCSCTTCTTCCEEECSCTTTS-C----CBTTBEEECTHHH
T ss_pred cCCcEEEEecCCCH---HHHHHHHHHcCCEEEeccccccCcccccCCCceEEEEecccchh-h----hcCCCeEEcchHH
Confidence 77899999775433 457889999999998752 36999999974311 1 2356789999999
Q ss_pred HHHHHhCCCCCCcCcc
Q 002369 787 ESIAQVKIHIDEESYL 802 (930)
Q Consensus 787 ~eClkagk~VDEe~Ye 802 (930)
.+|++++.++++++|.
T Consensus 85 ~Dcin~~~lLp~~~Y~ 100 (100)
T 2ep8_A 85 FDSVNARLLLPVAEYF 100 (100)
T ss_dssp HHHHHHTSCCCTTTCC
T ss_pred HHHHhcCCcCChhhcC
Confidence 9999999999999993
No 38
>1z56_C DNA ligase IV; DNA repair, BRCT, NHEJ, XRCC4, DNA ligase, coiled-coil; HET: DNA; 3.92A {Saccharomyces cerevisiae}
Probab=98.34 E-value=1.8e-07 Score=97.51 Aligned_cols=87 Identities=9% Similarity=0.088 Sum_probs=47.4
Q ss_pred CCCeEEEEcCCCCHHHHHHHHHHHHHcCCEEeccCCCceEEEeCCCCC--cH----HHHHHHHCC---------C-CEec
Q 002369 719 MASIQVLFSHHLDEDIIKQQKKILDRLGASEVSSITDATHFVTDIFVR--TR----NMLEAIASG---------K-PVVT 782 (930)
Q Consensus 719 ms~vrVlFSG~~dee~~k~LKkiIkkLGG~Vaddisk~THLVa~k~~R--T~----KfL~AIA~G---------k-pIVS 782 (930)
|.+++|+|+++......+.++.+|..+||+|++++..+||.|+....- .. ++...++.+ + .||+
T Consensus 161 F~g~~~yl~~~~~~~~~~~l~~~i~~~GG~v~~~l~~~t~hVV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iV~ 240 (264)
T 1z56_C 161 FSNRIAYVPRRKISTEDDIIEMKIKLFGGKITDQQSLCNLIIIPYTDPILRKDCMNEVHEKIKEQIKASDTIPKIARVVA 240 (264)
T ss_dssp -------------------CHHHHHHHTTSCCCCSSSCSEEECCCSSTTTHHHHSSHHHHTTTTTTTSSSSCCCCCEEEC
T ss_pred hCCeEEEEecCCCchhHHHHHHHHHHcCCEEecccCCCEEEEEeCCCccchHHHHHHHHHHHHhhcccccccCCCCEEec
Confidence 678999999975343334567789999999999988766555543211 12 233334433 3 8999
Q ss_pred HHHHHHHHHhCCCCCCcCcccCC
Q 002369 783 HLWLESIAQVKIHIDEESYLLRD 805 (930)
Q Consensus 783 p~WL~eClkagk~VDEe~YeL~D 805 (930)
++||.+|++.|+++||+.|.+.+
T Consensus 241 ~~Wv~dci~~~~ll~e~~Y~~~~ 263 (264)
T 1z56_C 241 PEWVDHSINENCQVPEEDFPVVN 263 (264)
T ss_dssp THHHHHHHTTSCCCSSCCC----
T ss_pred HHHHHHHHHcCCcCCHHHcCCCC
Confidence 99999999999999999997653
No 39
>2cou_A ECT2 protein; BRCT domain, RHO GTPase, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.34 E-value=2.7e-07 Score=85.37 Aligned_cols=88 Identities=11% Similarity=-0.004 Sum_probs=65.5
Q ss_pred CCCCCCCceEEEeCCCCCCHHHHHHHHHhCCcEEEeccCcccccCCCCCCcEEEEecCCchhccHHHHhcCCeEEeHHHH
Q 002369 825 KHPLLKDQRVLITPNIKPSKETISSLIKSVHGQAVERLGRSALKDDKLPDDLLILSCEEDYEICEPFLEKGAAVYSSELL 904 (930)
Q Consensus 825 k~~LFkG~rfyItp~vkPske~L~~LIeagGGkVV~~~prs~lKd~~~pd~~IVISceeD~~~~~~ll~~Gi~VVSsEWI 904 (930)
+.++|.|+.||+++.....+..|..+|+..||.+...... .-.+||..+.....+....+.+++||+++||
T Consensus 9 ~~~~F~g~~i~~sg~~~~~r~~l~~~i~~~GG~~~~~~~~---------~~THLV~~~~~~~K~~~a~~~~i~IV~~~Wl 79 (109)
T 2cou_A 9 KVPPFQDCILSFLGFSDEEKHSMEEMTEMQGGSYLPVGDE---------RCTHLIVEENTVKDLPFEPSKKLFVVKQEWF 79 (109)
T ss_dssp CCCTTTTCBEEEESSCHHHHHHHHHHHHHHTCBCCCTTCT---------TCSEEEECTTTCSSCSSCCCTTSEEECHHHH
T ss_pred cCCcCCCeEEEecCCCHHHHHHHHHHHHHcCCEEecccCC---------CccEEEEeCCccHHHHHHHHCCCeEecHHHH
Confidence 4579999999999876667889999999999998764321 2346666544433344445679999999999
Q ss_pred HHHHhccc-ccccccccc
Q 002369 905 LNGMVTQK-LEYERYYMF 921 (930)
Q Consensus 905 LdSIL~Qk-Le~E~y~Lf 921 (930)
++||-... ++...|.+.
T Consensus 80 ~dsi~~g~~ldE~~Y~~~ 97 (109)
T 2cou_A 80 WGSIQMDARAGETMYLYE 97 (109)
T ss_dssp HHHHHTTSCCCGGGTBCC
T ss_pred HHHHHcCCcCChhccCCC
Confidence 99999865 666666553
No 40
>3l3e_A DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, cell cycle checkpoints, acetylation, cytoplasm, cytoskeleton, DNA damage; HET: DNA; 1.26A {Homo sapiens} PDB: 3pd7_A* 3jve_A*
Probab=98.27 E-value=1.8e-06 Score=78.98 Aligned_cols=89 Identities=12% Similarity=0.103 Sum_probs=66.0
Q ss_pred CCCCCCCceEEEeCCCCCCHHHHHHHHHhCCcEEEeccCcccccCCCCCCcEEEEecCC---chhccHHHHhcCCeEEeH
Q 002369 825 KHPLLKDQRVLITPNIKPSKETISSLIKSVHGQAVERLGRSALKDDKLPDDLLILSCEE---DYEICEPFLEKGAAVYSS 901 (930)
Q Consensus 825 k~~LFkG~rfyItp~vkPske~L~~LIeagGGkVV~~~prs~lKd~~~pd~~IVIScee---D~~~~~~ll~~Gi~VVSs 901 (930)
..++|.|+.|+|++...+.+..|+.+|+..||++...... .-.+||...+ ....+......|++||++
T Consensus 12 ~~~~l~g~~i~isg~~~~~r~~l~~li~~~Gg~v~~~~s~---------~~THlI~~~~~~~~~~K~~~A~~~gi~IV~~ 82 (107)
T 3l3e_A 12 APKPLHKVVVCVSKKLSKKQSELNGIAASLGADYRRSFDE---------TVTHFIYQGRPNDTNREYKSVKERGVHIVSE 82 (107)
T ss_dssp --CTTTTCEEEECGGGGGGHHHHHHHHHHTTCEEESSCCT---------TCCEEECCCCTTCCCHHHHHHHHTTCEEECH
T ss_pred ccCCCCCeEEEEeCCChHhHHHHHHHHHHcCCEEeccccC---------CceEEEecCCCCCCCHHHHHHHHCCCeEecH
Confidence 3579999999999887677999999999999999876422 2246665321 123455566789999999
Q ss_pred HHHHHHHhccc-cccccccccc
Q 002369 902 ELLLNGMVTQK-LEYERYYMFI 922 (930)
Q Consensus 902 EWILdSIL~Qk-Le~E~y~Lf~ 922 (930)
+||++|+-..+ ++.+.|.+..
T Consensus 83 ~Wl~~c~~~~~~l~e~~Y~~~~ 104 (107)
T 3l3e_A 83 HWLLDCAQECKHLPESLYPHTY 104 (107)
T ss_dssp HHHHHHHHHTSCCCGGGCCTTC
T ss_pred HHHHHHHHhCCCCchhhCCCCC
Confidence 99999999754 6777776543
No 41
>2coe_A Deoxynucleotidyltransferase, terminal variant; BRCT domain, DNA polymerase, teminal deoxynucleotidyltransferase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.22 E-value=7.3e-06 Score=78.10 Aligned_cols=82 Identities=13% Similarity=0.169 Sum_probs=61.4
Q ss_pred CCCeEEEE--cCCCCHHHHHHHHHHHHHcCCEEeccCC-CceEEEeCCCCCcHH---HHHH----HHCCCCEecHHHHHH
Q 002369 719 MASIQVLF--SHHLDEDIIKQQKKILDRLGASEVSSIT-DATHFVTDIFVRTRN---MLEA----IASGKPVVTHLWLES 788 (930)
Q Consensus 719 ms~vrVlF--SG~~dee~~k~LKkiIkkLGG~Vaddis-k~THLVa~k~~RT~K---fL~A----IA~GkpIVSp~WL~e 788 (930)
+.++.|.| .++ ....+.-+++.++..|+.|.+.++ .+||+|+... +... +|.. .+.+..||+..||++
T Consensus 21 F~g~~iy~v~~~~-g~~R~~~l~~l~r~~G~~V~~~ls~~VTHVVve~~-~~~e~~~~l~~~~l~~~~~~~lv~i~Wl~e 98 (120)
T 2coe_A 21 FQDLVVFILEKKM-GTTRRALLMELARRKGFRVENELSDSVTHIVAENN-SGSDVLEWLQAQKVQVSSQPELLDVSWLIE 98 (120)
T ss_dssp CTTCEEEEECTTT-CHHHHHHHHHHHHHHTCEECSSCCTTCCEEEESSC-CHHHHHHHHHHCCCCCSSCCEEEEHHHHHH
T ss_pred cCCeEEEEeeccc-chHHHHHHHHHHHHcCCEEeeccCCCcCEEEecCC-CHHHHHHHHhccccccccccEEeecHHHHH
Confidence 66777766 333 333456678899999999999987 7999999743 4433 3331 223678999999999
Q ss_pred HHHhCCCCCCcCcc
Q 002369 789 IAQVKIHIDEESYL 802 (930)
Q Consensus 789 Clkagk~VDEe~Ye 802 (930)
|+++|+.+||+.|.
T Consensus 99 smk~g~lv~ee~~~ 112 (120)
T 2coe_A 99 CIGAGKPVEMTGKH 112 (120)
T ss_dssp HHHTTSCCCCSSSS
T ss_pred HHHcCCccCcccce
Confidence 99999999996654
No 42
>3pc6_A DNA repair protein XRCC1; BRCT domain, protein:protein interactions, DNA L III-alpha BRCT2 domain, DNA binding protein; HET: DNA; 1.90A {Mus musculus} SCOP: c.15.1.1 PDB: 3pc8_A* 3qvg_B* 1cdz_A
Probab=98.06 E-value=1.3e-05 Score=74.61 Aligned_cols=85 Identities=12% Similarity=0.206 Sum_probs=62.0
Q ss_pred CCCCCceEEEeCCC-CCCHHHHHHHHHhCCcEEEeccCcccccCCCCCCcEEEEecCC-chhccHHHHh--cCCeEEeHH
Q 002369 827 PLLKDQRVLITPNI-KPSKETISSLIKSVHGQAVERLGRSALKDDKLPDDLLILSCEE-DYEICEPFLE--KGAAVYSSE 902 (930)
Q Consensus 827 ~LFkG~rfyItp~v-kPske~L~~LIeagGGkVV~~~prs~lKd~~~pd~~IVIScee-D~~~~~~ll~--~Gi~VVSsE 902 (930)
.+|.|++|||.+.+ .+.+..|+++|.+.||.|...... .-.+||+... |.. ...+.. .++.+|.++
T Consensus 6 d~F~g~~f~l~~~~p~~~r~~l~ryiia~GG~v~~~~~~---------~vTHvIt~~~~d~~-~~~a~~~~p~~~~V~P~ 75 (104)
T 3pc6_A 6 DFFEGKHFFLYGEFPGDERRRLIRYVTAFNGELEDYMNE---------RVQFVITAQEWDPN-FEEALMENPSLAFVRPR 75 (104)
T ss_dssp CTTTTCEEEEESCCSTTHHHHHHHHHHHTTCEECSSCCT---------TCCEEEESSCCCHH-HHHHHTTCTTCEEECHH
T ss_pred hhhCCeEEEEcCCCcHHHHHHHHHHHHHcCCEEEcccCC---------CceEEEeCCCCChh-HHHHhhhCCCCeEEccH
Confidence 59999999999987 566889999999999997664321 1246776543 332 233332 368999999
Q ss_pred HHHHHHhcccc-cccccccc
Q 002369 903 LLLNGMVTQKL-EYERYYMF 921 (930)
Q Consensus 903 WILdSIL~QkL-e~E~y~Lf 921 (930)
||++||-++++ ..+.|.+.
T Consensus 76 WI~~Ci~~~klvp~~~y~~~ 95 (104)
T 3pc6_A 76 WIYSCNEKQKLLPHQLYGVV 95 (104)
T ss_dssp HHHHHHHHTSCCCGGGGBCC
T ss_pred HHHHHHhcCccCCcccceec
Confidence 99999999886 45666554
No 43
>3u3z_A Microcephalin; DNA repair, cell cycle regulation, cell cycle; HET: SEP PTR; 1.50A {Homo sapiens} PDB: 3szm_A* 3t1n_A* 3sht_A 3shv_A*
Probab=98.04 E-value=2.5e-06 Score=86.48 Aligned_cols=79 Identities=11% Similarity=0.083 Sum_probs=64.0
Q ss_pred cCCCeE-EEEcCCCCHHHHHHHHHHHHHcCCEEeccCCCceEEEeCCCCCcHHHHHHHHCCCCEecHHHHHHHHHhCCCC
Q 002369 718 DMASIQ-VLFSHHLDEDIIKQQKKILDRLGASEVSSITDATHFVTDIFVRTRNMLEAIASGKPVVTHLWLESIAQVKIHI 796 (930)
Q Consensus 718 ~ms~vr-VlFSG~~dee~~k~LKkiIkkLGG~Vaddisk~THLVa~k~~RT~KfL~AIA~GkpIVSp~WL~eClkagk~V 796 (930)
=|.++. ++++++.... .+.++.+|+..||+|+.++..++++|++... +...+++||+|+||.+|+.+++++
T Consensus 119 LF~g~~~~~v~~~~~~~-~~~L~~lI~~~GG~v~~~~~~~~iiI~~~~~-------~~~~~~~~V~p~Wi~DsI~~~~ll 190 (199)
T 3u3z_A 119 LFADQPVMFVSPASSPP-VAKLCELVHLCGGRVSQVPRQASIVIGPYSG-------KKKATVKYLSEKWVLDSITQHKVC 190 (199)
T ss_dssp TTTTSCCEEECTTCSSC-HHHHHHHHHHTTCCBCSSGGGCSEEESCCCS-------CCCTTCEEECHHHHHHHHHHTSCC
T ss_pred hhCCCeEEEECCCCCCC-HHHHHHHHHHcCCEEeccCCCCEEEEeCCch-------hccCCCcEEChhHHHHHHHcCCcC
Confidence 477884 6667765443 3678999999999999999888888876322 235789999999999999999999
Q ss_pred CCcCcccC
Q 002369 797 DEESYLLR 804 (930)
Q Consensus 797 DEe~YeL~ 804 (930)
|+++|.+.
T Consensus 191 p~~~Y~~~ 198 (199)
T 3u3z_A 191 APENYLLS 198 (199)
T ss_dssp CGGGGBCC
T ss_pred ChHhccCC
Confidence 99999764
No 44
>1kzy_C Tumor suppressor P53-binding protein 1; tandem-BRCT and linker complexed with non-BRCT protein, three-helix bundle, parallel beta sheet; 2.50A {Homo sapiens} SCOP: c.15.1.4 c.15.1.4 PDB: 1gzh_B
Probab=98.01 E-value=1.8e-05 Score=83.36 Aligned_cols=96 Identities=14% Similarity=0.148 Sum_probs=66.6
Q ss_pred cCCCCCCCceEEEeCCCCC-----------------------------CHHHHHHHHHhCCcEEEeccCcccccCCCCCC
Q 002369 824 RKHPLLKDQRVLITPNIKP-----------------------------SKETISSLIKSVHGQAVERLGRSALKDDKLPD 874 (930)
Q Consensus 824 rk~~LFkG~rfyItp~vkP-----------------------------ske~L~~LIeagGGkVV~~~prs~lKd~~~pd 874 (930)
+..+||.|+.|+||....+ .+..|+.+|+.+||.|+.....+.. ....
T Consensus 11 ~~~~iF~g~~F~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~~~I~~~GG~v~~~~~~~~~---~~~~ 87 (259)
T 1kzy_C 11 LNKTLFLGYAFLLTMATTSDKLASRSKLPDGPTGSSEEEEEFLEIPPFNKQYTESQLRAGAGYILEDFNEAQC---NTAY 87 (259)
T ss_dssp SSTTTTTTEEEEECCCC---------------------------CCCCCHHHHHHHHHTTTCEECSSCCTTTT---TTTC
T ss_pred CCCcCcCCcEEEEEcccccccccccccccccccccccccccccccCcccHHHHHHHHHHCCCEEecCcccccc---ccCC
Confidence 3578999999999977543 4579999999999999976433210 1112
Q ss_pred cEEEEecCCch-hccHHHHhcCCeEEeHHHHHHHHhccc-cccccccccc
Q 002369 875 DLLILSCEEDY-EICEPFLEKGAAVYSSELLLNGMVTQK-LEYERYYMFI 922 (930)
Q Consensus 875 ~~IVISceeD~-~~~~~ll~~Gi~VVSsEWILdSIL~Qk-Le~E~y~Lf~ 922 (930)
..++|+..... ..+...+..|++||+++||.+|+-..+ ++++.|.|-.
T Consensus 88 ~t~LIa~~~~rt~K~l~ala~g~~iVs~~Wl~dc~~~~~~l~~~~Y~l~~ 137 (259)
T 1kzy_C 88 QCLLIADQHCRTRKYFLCLASGIPCVSHVWVHDSCHANQLQNYRNYLLPA 137 (259)
T ss_dssp EEEEEESSCCCSHHHHHHHHHTCCEEETHHHHHHHHHTSCCCGGGSBCCC
T ss_pred CeEEEcCCCCCcHHHHHHHhcCCCCccHHHHHHHHHcCCcCCHHHccCCC
Confidence 35677654221 122233457999999999999998755 7889998853
No 45
>1wf6_A Similar to S.pombe -RAD4+/CUT5+product (A40727); BRCT, topoisomerase II binding protein, checkpoint; NMR {Homo sapiens} SCOP: c.15.1.5
Probab=98.00 E-value=1.7e-05 Score=75.45 Aligned_cols=86 Identities=20% Similarity=0.209 Sum_probs=61.9
Q ss_pred CCCCCCCceEEEeCCCCCCHHHHHHHHHhCCcEEEeccCcccccCCCCCCcEEEEecCCchhccHHHHh---cCCeEEeH
Q 002369 825 KHPLLKDQRVLITPNIKPSKETISSLIKSVHGQAVERLGRSALKDDKLPDDLLILSCEEDYEICEPFLE---KGAAVYSS 901 (930)
Q Consensus 825 k~~LFkG~rfyItp~vkPske~L~~LIeagGGkVV~~~prs~lKd~~~pd~~IVISceeD~~~~~~ll~---~Gi~VVSs 901 (930)
...+|.|+.|||.+......+.|..+|+.+||+++..... .-.+||+..... ....++. .++.||++
T Consensus 37 ~~~lF~g~~i~i~G~~~~~~~~L~~~i~~~Gg~v~~~l~~---------~vTHvI~~~~~~-~~~~~~~~~~~~~~iV~~ 106 (132)
T 1wf6_A 37 PEDLLDGCRIYLCGFSGRKLDKLRRLINSGGGVRFNQLNE---------DVTHVIVGDYDD-ELKQFWNKSAHRPHVVGA 106 (132)
T ss_dssp CTTTTTTCEEEEESCCSHHHHHHHHHHHHTTCEEESSCCS---------SCCEEEESSCCS-HHHHHHHHSCCCCCEEEH
T ss_pred cccccCCEEEEEECCChHHHHHHHHHHHHCCCEEeCcCCC---------CCeEEEECCchH-HHHHHHHhhCCCCeEech
Confidence 3579999999999775556888999999999999876432 124666653221 2223332 46899999
Q ss_pred HHHHHHHhccc-cccccccc
Q 002369 902 ELLLNGMVTQK-LEYERYYM 920 (930)
Q Consensus 902 EWILdSIL~Qk-Le~E~y~L 920 (930)
+||++||-..+ |+.+.|.+
T Consensus 107 ~Wv~dsi~~~~ll~e~~Y~~ 126 (132)
T 1wf6_A 107 KWLLECFSKGYMLSEEPYIH 126 (132)
T ss_dssp HHHHHHHHHSSCCCSGGGBC
T ss_pred HHHHHHHHcCCcCCHhhccC
Confidence 99999999866 56666654
No 46
>2cok_A Poly [ADP-ribose] polymerase-1; BRCT domain, DNA repair, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2le0_A
Probab=97.99 E-value=1.2e-05 Score=75.72 Aligned_cols=75 Identities=15% Similarity=0.221 Sum_probs=62.0
Q ss_pred cCCCeEEEEcCCCCHHHHHHHHHHHHHcCCEEeccCC-CceEEEeCCC--CCcHHHHHHHHCCCCEecHHHHHHHHHhC
Q 002369 718 DMASIQVLFSHHLDEDIIKQQKKILDRLGASEVSSIT-DATHFVTDIF--VRTRNMLEAIASGKPVVTHLWLESIAQVK 793 (930)
Q Consensus 718 ~ms~vrVlFSG~~dee~~k~LKkiIkkLGG~Vaddis-k~THLVa~k~--~RT~KfL~AIA~GkpIVSp~WL~eClkag 793 (930)
.+.+..|+|||-+.. .+.+++++|+.+||.|+.+++ ++||||++.- .-+-|+-.|...|+|||+.+||.++...+
T Consensus 10 ~l~G~~~ViTG~l~~-~R~e~k~~ie~~Ggkv~~sVskkT~~lV~g~~~e~~gsKl~kA~~lgI~IvsE~~l~~~~~~~ 87 (113)
T 2cok_A 10 PLSNMKILTLGKLSR-NKDEVKAMIEKLGGKLTGTANKASLCISTKKEVEKMNKKMEEVKEANIRVVSEDFLQDVSAST 87 (113)
T ss_dssp SSSSCEEEECSCCSS-CHHHHHHHHHHTTCEEESCSTTCSEEECCHHHHHHCCHHHHHHHHTTCCEECTHHHHHHHSCC
T ss_pred CcCCCEEEEEecCCC-CHHHHHHHHHHCCCEEcCccccCccEEEECCCCCCCChHHHHHHHCCCcEEeHHHHHHHHhhc
Confidence 488999999997755 467789999999999999998 6889998731 13579999999999999999976665444
No 47
>1l0b_A BRCA1; TANDEM-BRCT, three-helix bundle, unknown function; 2.30A {Rattus norvegicus} SCOP: c.15.1.3 c.15.1.3
Probab=97.99 E-value=7.7e-06 Score=82.95 Aligned_cols=88 Identities=16% Similarity=0.199 Sum_probs=58.0
Q ss_pred ccCCCeEEEEcC-CCCHHHHHHHHHHHHHcCCEEeccCCC------ceEEE-eCCC--CCcHHHHH-HHHCCCCEecHHH
Q 002369 717 RDMASIQVLFSH-HLDEDIIKQQKKILDRLGASEVSSITD------ATHFV-TDIF--VRTRNMLE-AIASGKPVVTHLW 785 (930)
Q Consensus 717 k~ms~vrVlFSG-~~dee~~k~LKkiIkkLGG~Vaddisk------~THLV-a~k~--~RT~KfL~-AIA~GkpIVSp~W 785 (930)
.-+.++.|+|+| +.... .+.++.+|+..||+|+..... +||+| +..- .+..++-. |...|++||+++|
T Consensus 116 ~lF~g~~~~~~~~~~~~~-~~~l~~li~~~GG~v~~~~~~~~~~~~~~~~vvv~~~~~~~~~~~~~l~~~~~i~iVs~~W 194 (229)
T 1l0b_A 116 KLFEGLQIYCCEPFTNMP-KDELERMLQLCGASVVKELPLLTRDTGAHPIVLVQPSAWTEDNDCPDIGQLCKGRLVMWDW 194 (229)
T ss_dssp -CCTTCEEEECSCCSSSC-HHHHHHHHHHTTCEEECSSSCGGGCCSSCCEEEEC-------------------CEEETHH
T ss_pred hhhcCceEEEEecCCCCC-HHHHHHHHHHCCCEEeCCcccccccCCCceEEEEcCCccchhhhHHHHHHHcCCeEeehhH
Confidence 348899999977 44332 467889999999999988764 47744 4321 23333321 2347899999999
Q ss_pred HHHHHHhCCCCCCcCcccCC
Q 002369 786 LESIAQVKIHIDEESYLLRD 805 (930)
Q Consensus 786 L~eClkagk~VDEe~YeL~D 805 (930)
|.+|+..++++++++|.+..
T Consensus 195 lldsI~~~~~~~~~~Y~l~~ 214 (229)
T 1l0b_A 195 VLDSISVYRCRDLDAYLVQN 214 (229)
T ss_dssp HHHHHHTTSCCCGGGGBCC-
T ss_pred HHHHHhcCCcCCccceEccc
Confidence 99999999999999998875
No 48
>3pc7_A DNA ligase 3; DNA repair, BRCT domain, protein:protein interactions, XRCC1 domain, DNA binding protein; HET: DNA MSE; 1.65A {Homo sapiens} SCOP: c.15.1.2 PDB: 3pc8_C* 1imo_A* 1in1_A* 3qvg_A*
Probab=97.97 E-value=8.5e-06 Score=73.91 Aligned_cols=69 Identities=9% Similarity=0.148 Sum_probs=56.1
Q ss_pred CCCeEEEEcCCCCHHHHHHHHHHHHHcCCEEeccCC--CceEEEeCCCCCcHHHHHHHHCCCCEecHHHHHHHHHhCCCC
Q 002369 719 MASIQVLFSHHLDEDIIKQQKKILDRLGASEVSSIT--DATHFVTDIFVRTRNMLEAIASGKPVVTHLWLESIAQVKIHI 796 (930)
Q Consensus 719 ms~vrVlFSG~~dee~~k~LKkiIkkLGG~Vaddis--k~THLVa~k~~RT~KfL~AIA~GkpIVSp~WL~eClkagk~V 796 (930)
+.++++.+.+-.+.. ..+...+.++||.|+.+.. ++||+|++.. ...+..+|+|+||.+|++.+++|
T Consensus 17 Fsg~~~~l~~~v~~~--~~l~RyiiAfgG~v~~~~~~~~vTHvI~~~~---------~~~~~~~V~p~WI~dcI~k~~Ll 85 (88)
T 3pc7_A 17 FTGVRLYLPPSTPDF--SRLRRYFVAFDGDLVQEFDMTSATHVLGSRD---------KNPAAQQVSPEWIWACIRKRRLV 85 (88)
T ss_dssp STTCEECCCTTSTTH--HHHHHHHHHTTCEECCGGGGGGCSEEESCCT---------TCTTSEEECHHHHHHHHHHTSCC
T ss_pred hcCeEEEccCCcCch--hhheeeeeecCCEEecccCCCcCeEEecCCC---------cCCCCcEEchHHHHHHHhCCccc
Confidence 678888886544333 4578889999999987654 7999998763 36788999999999999999999
Q ss_pred CC
Q 002369 797 DE 798 (930)
Q Consensus 797 DE 798 (930)
++
T Consensus 86 ~~ 87 (88)
T 3pc7_A 86 AP 87 (88)
T ss_dssp SC
T ss_pred CC
Confidence 75
No 49
>2vxb_A DNA repair protein RHP9; BRCT, nucleus, cell cycle, DNA damage, DNA replication inhibitor, phosphoprotein, checkpoint signalling; HET: DNA; 2.3A {Schizosaccharomyces pombe} PDB: 2vxc_A*
Probab=97.95 E-value=2.2e-05 Score=81.98 Aligned_cols=96 Identities=8% Similarity=0.097 Sum_probs=64.9
Q ss_pred CCCCceEEEeCCC---CCCHHHHHHHHHhCCcEEEecc-------Cc-ccc------cCC---CCCCcEEEEecCCch-h
Q 002369 828 LLKDQRVLITPNI---KPSKETISSLIKSVHGQAVERL-------GR-SAL------KDD---KLPDDLLILSCEEDY-E 886 (930)
Q Consensus 828 LFkG~rfyItp~v---kPske~L~~LIeagGGkVV~~~-------pr-s~l------Kd~---~~pd~~IVISceeD~-~ 886 (930)
||.|+.|+|+... ...+..|+.+|+.+||.|+..- +. +.. +.. ......+||+..... .
T Consensus 2 lF~g~~F~ls~~~~~~~~~k~~L~~~I~~~GG~v~~~g~~~lf~~~~~~~~~~~~~~k~~~~~~~~~~t~lia~~~~rt~ 81 (241)
T 2vxb_A 2 IFDDCVFAFSGPVHEDAYDRSALETVVQDHGGLVLDTGLRPLFNDPFKSKQKKLRHLKPQKRSKSWNQAFVVSDTFSRKV 81 (241)
T ss_dssp TTTTEEEEECCCSSTTSSCHHHHHHHHHHTTCEECTTCSGGGBCCSCC----CCCSCCBCGGGGGCSEEEEECSSCCCCH
T ss_pred CCCCcEEEEecCCCCchhhHHHHHHHHHHCCCEEecCcchhhccCccccccccccccccccccccccceEEEcCCCCCcH
Confidence 8999999999872 3468999999999999998751 11 000 000 000236677654331 2
Q ss_pred ccHHHHhcCCeEEeHHHHHHHHhccc-ccccccccccc
Q 002369 887 ICEPFLEKGAAVYSSELLLNGMVTQK-LEYERYYMFIV 923 (930)
Q Consensus 887 ~~~~ll~~Gi~VVSsEWILdSIL~Qk-Le~E~y~Lf~d 923 (930)
.+...+..|++||+++||.+||-..+ ++++.|+|...
T Consensus 82 K~~~ala~gipiV~~~Wi~dc~~~~~~~~~~~ylL~~~ 119 (241)
T 2vxb_A 82 KYLEALAFNIPCVHPQFIKQCLKMNRVVDFSPYLLASG 119 (241)
T ss_dssp HHHHHHHHTCCEECTHHHHHHHHHTSCCCSGGGBBEEE
T ss_pred HHHHHHHcCCCEecHHHHHHHHHcCCcCChhhccCCCC
Confidence 23334467999999999999998765 68888888544
No 50
>1t15_A Breast cancer type 1 susceptibility protein; protein-peptide complex, antitumor protein; HET: SEP; 1.85A {Homo sapiens} SCOP: c.15.1.3 c.15.1.3 PDB: 1jnx_X* 1t29_A* 1t2v_A* 1y98_A* 3coj_X* 3k0h_A* 3k0k_A* 3pxe_A* 3pxb_A 3pxc_X 1t2u_A 1n5o_X 3pxa_A 3k15_A* 3k16_A* 3pxd_A 2ing_X 1oqa_A
Probab=97.86 E-value=9.9e-06 Score=80.88 Aligned_cols=88 Identities=16% Similarity=0.234 Sum_probs=63.4
Q ss_pred ccCCCeEEEEcC-CCCHHHHHHHHHHHHHcCCEEeccCCCc-----eE-E-EeCC--CCCcHHHH-HHHHCCCCEecHHH
Q 002369 717 RDMASIQVLFSH-HLDEDIIKQQKKILDRLGASEVSSITDA-----TH-F-VTDI--FVRTRNML-EAIASGKPVVTHLW 785 (930)
Q Consensus 717 k~ms~vrVlFSG-~~dee~~k~LKkiIkkLGG~Vaddisk~-----TH-L-Va~k--~~RT~KfL-~AIA~GkpIVSp~W 785 (930)
+-+.++.|+|++ +... ..+.++.+|+..||+|+...... +| + |+.. .....++. .|...|++||+++|
T Consensus 114 ~lF~g~~~~~~~~~~~~-~~~~l~~li~~~GG~v~~~~~~~~~~~~~~~ivi~~~~~~~~~~~~~~~a~~~~~~iV~~~W 192 (214)
T 1t15_A 114 KIFRGLEICCYGPFTNM-PTDQLEWMVQLCGASVVKELSSFTLGTGVHPIVVVQPDAWTEDNGFHAIGQMCEAPVVTREW 192 (214)
T ss_dssp CTTTTCEEEECSCCSSS-CHHHHHHHHHHTTCEECCSGGGCCCSTTCCEEEEECGGGCSSCGGGGSSTTTCSSCEEEHHH
T ss_pred cccCCCEEEEEecCCCC-CHHHHHHHHHHCCCEEecCccccccCCCCccEEEECCCcccchhhHHHHHHhcCCcEEeccH
Confidence 348899999987 4332 24678999999999999877532 24 4 3432 11112221 24457999999999
Q ss_pred HHHHHHhCCCCCCcCcccCC
Q 002369 786 LESIAQVKIHIDEESYLLRD 805 (930)
Q Consensus 786 L~eClkagk~VDEe~YeL~D 805 (930)
|.+|+..++++++++|.+.+
T Consensus 193 i~dsi~~~~~l~~~~Y~l~~ 212 (214)
T 1t15_A 193 VLDSVALYQCQELDTYLIPQ 212 (214)
T ss_dssp HHHHHHHTSCCCSGGGBCCC
T ss_pred HHHhHhhcCcCCCcceeecc
Confidence 99999999999999998864
No 51
>3pa6_A Microcephalin; BRCT domain, cell cycle; HET: MSE; 1.50A {Homo sapiens} PDB: 3ktf_A* 2wt8_A*
Probab=97.78 E-value=7.4e-05 Score=69.53 Aligned_cols=89 Identities=8% Similarity=0.068 Sum_probs=66.2
Q ss_pred CCCCCCceEEEeCCCC----CCHHHHHHHHHhCCcEEEeccCcccccCCCCCCcEEEEecCCchhccHHHHhcCCeEEeH
Q 002369 826 HPLLKDQRVLITPNIK----PSKETISSLIKSVHGQAVERLGRSALKDDKLPDDLLILSCEEDYEICEPFLEKGAAVYSS 901 (930)
Q Consensus 826 ~~LFkG~rfyItp~vk----Pske~L~~LIeagGGkVV~~~prs~lKd~~~pd~~IVISceeD~~~~~~ll~~Gi~VVSs 901 (930)
.|+|+|+.|||..... ...+.+..+++..||+|+....+. -.+||..+.....+....+.+++||++
T Consensus 5 ~p~f~g~vvyvd~~~~~g~~~~s~~l~~~l~~~GA~v~~~l~~~---------vTHvV~~~~~~~~~~~A~~~~i~iV~~ 75 (107)
T 3pa6_A 5 APILKDVVAYVEVWSSNGTENYSKTFTTQLVDMGAKVSKTFNKQ---------VTHVIFKDGYQSTWDKAQKRGVKLVSV 75 (107)
T ss_dssp CCTTTTCEEEEEEBCTTSCCBCHHHHHHHHHHTTCEECSSCCTT---------CCEEEEESCCHHHHHHHHHHTCEEECH
T ss_pred ccccCCEEEEEeccCCCChhhHHHHHHHHHHHcCCEEecccCCC---------ccEEEEeCCCChHHHHHhcCCCEEECH
Confidence 5799999999965432 236889999999999998875432 246665544444555566779999999
Q ss_pred HHHHHHHhccc-ccccccccccc
Q 002369 902 ELLLNGMVTQK-LEYERYYMFIV 923 (930)
Q Consensus 902 EWILdSIL~Qk-Le~E~y~Lf~d 923 (930)
+||.+|+-..+ ++-+.|.+...
T Consensus 76 ~Wv~~C~~~~~~vdE~~Y~i~~~ 98 (107)
T 3pa6_A 76 LWVEKCRTAGAHIDESLFPAANM 98 (107)
T ss_dssp HHHHHHHHHTSCCCGGGSBCCCT
T ss_pred HHHHHHHHhCccCChhcccCCCC
Confidence 99999999754 67777776543
No 52
>2etx_A Mediator of DNA damage checkpoint protein 1; tandem BRCT domains histone gamma-H2AX, cell cycle; 1.33A {Homo sapiens} PDB: 2azm_A* 3k05_A* 2ado_A
Probab=97.72 E-value=5.7e-05 Score=76.59 Aligned_cols=89 Identities=13% Similarity=0.161 Sum_probs=67.5
Q ss_pred hccCCCeEEEEcCCCCHHHHHHHHHHHHHcCCEEeccCCC---ceEEEeCCCCCcHHHHHHHHCCCCEecHHHHHHHHHh
Q 002369 716 RRDMASIQVLFSHHLDEDIIKQQKKILDRLGASEVSSITD---ATHFVTDIFVRTRNMLEAIASGKPVVTHLWLESIAQV 792 (930)
Q Consensus 716 rk~ms~vrVlFSG~~dee~~k~LKkiIkkLGG~Vaddisk---~THLVa~k~~RT~KfL~AIA~GkpIVSp~WL~eClka 792 (930)
.+-+.+..|+|++..... .+.++.+|+..||.|...... -+|+|.....-..++..++..|+|||+++||.+|+..
T Consensus 113 ~~lF~g~~~~~~~~~~~~-~~~l~~li~~~GG~v~~~~~~~~~~~~ivI~~~~d~~~~~~~~~~~i~vvs~eWi~~sI~~ 191 (209)
T 2etx_A 113 RRLLEGYEIYVTPGVQPP-PPQMGEIISCCGGTYLPSMPRSYKPQRVVITCPQDFPHCSIPLRVGLPLLSPEFLLTGVLK 191 (209)
T ss_dssp SCTTTTCEEEECTTCSSC-HHHHHHHHHHTTCEECSSCCCSCCTTEEEECCGGGGGGCHHHHHHTCCEECTHHHHHHHHH
T ss_pred CCCcCCcEEEEeCCCCCC-HHHHHHHHHHCCCEEECCCCCCCCCceEEEECcccHHHHHHHHHCCCeEEcHHHHHHHHHh
Confidence 356889999999875443 357889999999999987653 3576664332233444577889999999999999998
Q ss_pred CCCCCCcCcccCCc
Q 002369 793 KIHIDEESYLLRDT 806 (930)
Q Consensus 793 gk~VDEe~YeL~D~ 806 (930)
+++ |++.|.+..+
T Consensus 192 q~l-d~e~y~l~~~ 204 (209)
T 2etx_A 192 QEA-KPEAFVLSPL 204 (209)
T ss_dssp TCC-CGGGGBCCTT
T ss_pred ccc-ChHHheecCC
Confidence 775 9999988643
No 53
>2ep8_A Pescadillo homolog 1; A/B/A 3 layers, nucleolus, ribosome biogenesis, DNA damage, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.67 E-value=9.4e-05 Score=68.11 Aligned_cols=86 Identities=9% Similarity=0.144 Sum_probs=56.8
Q ss_pred CCCCCCceEEEeCCCCCCHHHHHHHHHhCCcEEEeccC---cccccCCCCCCcEEEEecCCchhccHHHHhcCCeEEeHH
Q 002369 826 HPLLKDQRVLITPNIKPSKETISSLIKSVHGQAVERLG---RSALKDDKLPDDLLILSCEEDYEICEPFLEKGAAVYSSE 902 (930)
Q Consensus 826 ~~LFkG~rfyItp~vkPske~L~~LIeagGGkVV~~~p---rs~lKd~~~pd~~IVISceeD~~~~~~ll~~Gi~VVSsE 902 (930)
..||+|+.|||...+ +++.|+.+|+++||+|+...- -...... ...-.++|++...... ...+..+|.++
T Consensus 10 ~~LF~g~~F~i~~e~--p~~~le~~I~~~GG~v~~~~~~~~g~~~~~~-~~~iTh~I~drp~~~~----~~~~r~~VqPq 82 (100)
T 2ep8_A 10 KKLFEGLKFFLNREV--PREALAFIIRSFGGEVSWDKSLCIGATYDVT-DSRITHQIVDRPGQQT----SVIGRCYVQPQ 82 (100)
T ss_dssp CCTTSSCEEECCSSS--CHHHHHHHHHHTTCEEECCTTTSSCCCSCTT-CTTCCEEECSCTTTSC----CBTTBEEECTH
T ss_pred HHHcCCcEEEEecCC--CHHHHHHHHHHcCCEEEeccccccCcccccC-CCceEEEEecccchhh----hcCCCeEEcch
Confidence 579999999998754 589999999999999876420 0001000 1123566765321111 12356899999
Q ss_pred HHHHHHhccc-cccccc
Q 002369 903 LLLNGMVTQK-LEYERY 918 (930)
Q Consensus 903 WILdSIL~Qk-Le~E~y 918 (930)
||+|||-.++ |.++.|
T Consensus 83 WV~Dcin~~~lLp~~~Y 99 (100)
T 2ep8_A 83 WVFDSVNARLLLPVAEY 99 (100)
T ss_dssp HHHHHHHHTSCCCTTTC
T ss_pred HHHHHHhcCCcCChhhc
Confidence 9999999877 456665
No 54
>2dun_A POL MU, DNA polymerase MU; layers A/B/A, parallel beta-sheet of 4 strands, non- homologous END jonting, somatic hypermutation, V(D)J recombination; HET: DNA; NMR {Homo sapiens} PDB: 2htf_A*
Probab=97.67 E-value=3.9e-05 Score=74.29 Aligned_cols=85 Identities=12% Similarity=0.099 Sum_probs=62.5
Q ss_pred CCCeEEEEcCCC-CHHHHHHHHHHHHHcCCEEeccCC-CceEEEeCC--CCCcHHHHH----HH---HCCCCEecHHHHH
Q 002369 719 MASIQVLFSHHL-DEDIIKQQKKILDRLGASEVSSIT-DATHFVTDI--FVRTRNMLE----AI---ASGKPVVTHLWLE 787 (930)
Q Consensus 719 ms~vrVlFSG~~-dee~~k~LKkiIkkLGG~Vaddis-k~THLVa~k--~~RT~KfL~----AI---A~GkpIVSp~WL~ 787 (930)
+.+++|.+=... ....+.-+++++...|+.|.+.++ .+||+|+.. ..|.+.+|. ++ +.+..+|+..||.
T Consensus 11 F~~v~iyive~kmG~sRr~fL~~la~~kGf~v~~~~S~~VTHVV~E~~s~~~~~~~L~~~~~~l~~~~~~~~lLdisWlt 90 (133)
T 2dun_A 11 FPGVAIYLVEPRMGRSRRAFLTGLARSKGFRVLDACSSEATHVVMEETSAEEAVSWQERRMAAAPPGCTPPALLDISWLT 90 (133)
T ss_dssp EEEEEEEECHHHHCSHHHHHHHHHHHHHTEEECSSCCTTCCEEEESSCCHHHHHHHHHHHHHHSCTTCCCCEEEEHHHHH
T ss_pred cCccEEEEecCCcCHHHHHHHHHHHHhcCCEeccccCCCceEEEecCCCHHHHHHHHHHhhcccCcCCCCcEEeccHHHH
Confidence 556666663321 222456788999999999999998 799999975 345555662 12 2567899999999
Q ss_pred HHHHhCCCCCCcCccc
Q 002369 788 SIAQVKIHIDEESYLL 803 (930)
Q Consensus 788 eClkagk~VDEe~YeL 803 (930)
+|+++|+.|+++.|.+
T Consensus 91 ecm~~g~pV~~e~~~~ 106 (133)
T 2dun_A 91 ESLGAGQPVPVECRHR 106 (133)
T ss_dssp HHHHHTSCCCCCTTTS
T ss_pred HHHhcCCcCCcccceE
Confidence 9999999999966543
No 55
>2nte_A BARD-1, BRCA1-associated ring domain protein 1; BRCT, ring finger, zinc-binding protein, ubiquitin LI antitumor protein; 1.90A {Homo sapiens} PDB: 3fa2_A 2r1z_A
Probab=97.59 E-value=2.2e-05 Score=79.09 Aligned_cols=83 Identities=6% Similarity=-0.065 Sum_probs=57.6
Q ss_pred ccCCCeEEEEcCCCCHHHHHHHHHHHHHcCCEEeccC------------------------CCceEEEeCCCCCcHHHHH
Q 002369 717 RDMASIQVLFSHHLDEDIIKQQKKILDRLGASEVSSI------------------------TDATHFVTDIFVRTRNMLE 772 (930)
Q Consensus 717 k~ms~vrVlFSG~~dee~~k~LKkiIkkLGG~Vaddi------------------------sk~THLVa~k~~RT~KfL~ 772 (930)
+-|.++.|+|++.......+.++.+|+..||.|+... ..|||+|+....+-.+.-.
T Consensus 103 ~lF~g~~~~l~~~~~~~~~~~l~~lI~~~GG~v~~~~p~~~~~~~~~~~~v~~~~~~~~~~~~~t~~iv~~~~~~~~~~~ 182 (210)
T 2nte_A 103 KLFDGCYFYLWGTFKHHPKDNLIKLVTAGGGQILSRKPKPDSDVTQTINTVAYHARPDSDQRFCTQYIIYEDLCNYHPER 182 (210)
T ss_dssp CTTTTCEEEECSCCSSSCHHHHHHHHHHTTCEEESSCCCGGGCGGGSSCCCCTTSCTTCGGGTCCEEEEECSCSSCCCSC
T ss_pred cccCceEEEEeccCCCCCHHHHHHHHHHCCCEEEecCCCCccccccccceeeeccCCCcccccceEEEEeccccccCHHH
Confidence 3478999999983222235678999999999998511 2479998865321100001
Q ss_pred HHHCCCCEecHHHHHHHHHhCCCCCCc
Q 002369 773 AIASGKPVVTHLWLESIAQVKIHIDEE 799 (930)
Q Consensus 773 AIA~GkpIVSp~WL~eClkagk~VDEe 799 (930)
+...++++|+++||.+|+..+++++.+
T Consensus 183 ~~~~~v~~V~~~Wl~dcI~~~~llp~~ 209 (210)
T 2nte_A 183 VRQGKVWKAPSSWFIDCVMSFELLPLD 209 (210)
T ss_dssp SEETTEEEEEHHHHHHHHHHTSCCCSC
T ss_pred HhccCcccccHHHHHHHHHhCeeccCC
Confidence 223556999999999999999999865
No 56
>3pc7_A DNA ligase 3; DNA repair, BRCT domain, protein:protein interactions, XRCC1 domain, DNA binding protein; HET: DNA MSE; 1.65A {Homo sapiens} SCOP: c.15.1.2 PDB: 3pc8_C* 1imo_A* 1in1_A* 3qvg_A*
Probab=97.56 E-value=0.0001 Score=66.88 Aligned_cols=72 Identities=14% Similarity=0.271 Sum_probs=54.9
Q ss_pred CCCCCCceEEEeCCCCCCHHHHHHHHHhCCcEEEeccCcccccCCCCCCcEEEEecCCchhccHHHHhcCCeEEeHHHHH
Q 002369 826 HPLLKDQRVLITPNIKPSKETISSLIKSVHGQAVERLGRSALKDDKLPDDLLILSCEEDYEICEPFLEKGAAVYSSELLL 905 (930)
Q Consensus 826 ~~LFkG~rfyItp~vkPske~L~~LIeagGGkVV~~~prs~lKd~~~pd~~IVISceeD~~~~~~ll~~Gi~VVSsEWIL 905 (930)
..+|.|++|||.+.+ +....|++.|.+.||.|+...... .-.+||.+.. ...+..+|.++||+
T Consensus 14 pdiFsg~~~~l~~~v-~~~~~l~RyiiAfgG~v~~~~~~~--------~vTHvI~~~~--------~~~~~~~V~p~WI~ 76 (88)
T 3pc7_A 14 LDIFTGVRLYLPPST-PDFSRLRRYFVAFDGDLVQEFDMT--------SATHVLGSRD--------KNPAAQQVSPEWIW 76 (88)
T ss_dssp CCCSTTCEECCCTTS-TTHHHHHHHHHHTTCEECCGGGGG--------GCSEEESCCT--------TCTTSEEECHHHHH
T ss_pred ChhhcCeEEEccCCc-CchhhheeeeeecCCEEecccCCC--------cCeEEecCCC--------cCCCCcEEchHHHH
Confidence 469999999998876 456799999999999998743211 1236775432 13478999999999
Q ss_pred HHHhccccc
Q 002369 906 NGMVTQKLE 914 (930)
Q Consensus 906 dSIL~QkLe 914 (930)
+||-+++|-
T Consensus 77 dcI~k~~Ll 85 (88)
T 3pc7_A 77 ACIRKRRLV 85 (88)
T ss_dssp HHHHHTSCC
T ss_pred HHHhCCccc
Confidence 999998874
No 57
>2l42_A DNA-binding protein RAP1; BRCT domain, protein binding; NMR {Saccharomyces cerevisiae}
Probab=97.50 E-value=8.3e-05 Score=68.81 Aligned_cols=87 Identities=13% Similarity=0.224 Sum_probs=69.0
Q ss_pred CCCCCCCceEEEeCCCC-----CCHHHHHHHHHhCCcEEEeccCcccccCCCCCCcEEEEecCCchhccHHHHhcCCeEE
Q 002369 825 KHPLLKDQRVLITPNIK-----PSKETISSLIKSVHGQAVERLGRSALKDDKLPDDLLILSCEEDYEICEPFLEKGAAVY 899 (930)
Q Consensus 825 k~~LFkG~rfyItp~vk-----Pske~L~~LIeagGGkVV~~~prs~lKd~~~pd~~IVISceeD~~~~~~ll~~Gi~VV 899 (930)
+.++|+|..|||..+.. ...+.|+++|.+.||.|+...|+. .....+|||..++. +++.|
T Consensus 8 ~~~vF~g~~Fyin~d~~a~ds~~d~d~L~~lI~~nGG~Vl~~lP~~------s~~~~yVVSpyN~t---------~LpTV 72 (106)
T 2l42_A 8 SGPPLSNMKFYLNRDADAHDSLNDIDQLARLIRANGGEVLDSKPRE------SKENVFIVSPYNHT---------NLPTV 72 (106)
T ss_dssp SSCSSCCCCBEECCSSSCSSCSSTHHHHHHHHHTTTSCCCEECCCC------CSSCCCCBCTTCCC---------SSSBC
T ss_pred cCccccCcEEEEcCCCccchhhhHHHHHHHHHHhcCcEEhhhCccc------ccCCeEEEeCCCCC---------CCccc
Confidence 36789999999987532 347999999999999999988753 12357888876655 57999
Q ss_pred eHHHHHHHHhccc-cccccccccccccc
Q 002369 900 SSELLLNGMVTQK-LEYERYYMFIVLFT 926 (930)
Q Consensus 900 SsEWILdSIL~Qk-Le~E~y~Lf~d~v~ 926 (930)
++-||..||.... |+.+.|++-.+.++
T Consensus 73 tpTYI~aC~~~nTLLnv~~YLvp~d~~~ 100 (106)
T 2l42_A 73 TPTYIKACCQSNSLLNMENYLVPYDNLE 100 (106)
T ss_dssp CTTHHHHHHHSTTSCGGGGCCBCSCC--
T ss_pred cHHHHHHHHhcCceecccccccCchhhc
Confidence 9999999999866 68899999887654
No 58
>3ef0_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, ALF4, transition state analog, cobalt, magnesium; 2.10A {Schizosaccharomyces pombe}
Probab=97.44 E-value=0.00025 Score=78.65 Aligned_cols=87 Identities=15% Similarity=0.190 Sum_probs=66.1
Q ss_pred CCCCCCceEEEeCCC----CCCHHHHHHHHHhCCcEEEeccCcccccCCCCCCcEEEEecCCchhccHHHHhc-CCeEEe
Q 002369 826 HPLLKDQRVLITPNI----KPSKETISSLIKSVHGQAVERLGRSALKDDKLPDDLLILSCEEDYEICEPFLEK-GAAVYS 900 (930)
Q Consensus 826 ~~LFkG~rfyItp~v----kPske~L~~LIeagGGkVV~~~prs~lKd~~~pd~~IVISceeD~~~~~~ll~~-Gi~VVS 900 (930)
.++|.|++|++++.. .+....+..+|+..||+++..... ...+||+.......+....+. |++||+
T Consensus 280 ~~~L~G~~ivfSG~~~~~~~~~~~~l~~l~~~lGa~v~~~vs~---------~vTHLVa~~~~t~K~~~A~~~~~I~IV~ 350 (372)
T 3ef0_A 280 QKVLKGCRLLFSGVIPLGVDVLSSDIAKWAMSFGAEVVLDFSV---------PPTHLIAAKIRTEKVKKAVSMGNIKVVK 350 (372)
T ss_dssp TTTSTTCEEEEESSSCTTSCTTTSHHHHHHHHTTCEEESSSSS---------CCSEEEECSCCCHHHHHHHHSSSCCEEE
T ss_pred hhhcCCcEEEEecccCCCcchhHHHHHHHHHHcCCEEeCcCCC---------CceEEEEcCCCchHHHHHHhcCCCEEEc
Confidence 478999999999875 244679999999999999886532 224666655444455555566 799999
Q ss_pred HHHHHHHHhc-ccccccccccc
Q 002369 901 SELLLNGMVT-QKLEYERYYMF 921 (930)
Q Consensus 901 sEWILdSIL~-QkLe~E~y~Lf 921 (930)
++||++|+.. ..++.+.|.|+
T Consensus 351 ~~Wl~~c~~~~~~vdE~~Y~l~ 372 (372)
T 3ef0_A 351 LNWLTESLSQWKRLPESDYLLY 372 (372)
T ss_dssp HHHHHHHHHTTSCCCGGGGBCC
T ss_pred HHHHHHHHHhCCcCChhhceeC
Confidence 9999999986 45777788764
No 59
>1l7b_A DNA ligase; BRCT, autostructure, structural genomics, NESG, PSI, protein structure initiative, northeast structural genomics consortium; HET: DNA; NMR {Thermus thermophilus} SCOP: c.15.1.2
Probab=97.34 E-value=0.00036 Score=63.39 Aligned_cols=75 Identities=16% Similarity=0.222 Sum_probs=58.2
Q ss_pred CCCCCCceEEEeCCCCCCHHHHHHHHHhCCcEEEeccCcccccCCCCCCcEEEEecCCchhccHHHHhcCCeEEeHHHHH
Q 002369 826 HPLLKDQRVLITPNIKPSKETISSLIKSVHGQAVERLGRSALKDDKLPDDLLILSCEEDYEICEPFLEKGAAVYSSELLL 905 (930)
Q Consensus 826 ~~LFkG~rfyItp~vkPske~L~~LIeagGGkVV~~~prs~lKd~~~pd~~IVISceeD~~~~~~ll~~Gi~VVSsEWIL 905 (930)
.++|.|++|+|++....++++++.+|+..||+|....... .+ +||..++.-..+....+.|++|++.+||+
T Consensus 5 ~~~l~G~~~v~TG~l~~~R~e~~~~i~~~Gg~v~~sVskk--------t~-~LV~g~~~gsK~~kA~~lgI~Ii~E~~f~ 75 (92)
T 1l7b_A 5 GEALKGLTFVITGELSRPREEVKALLRRLGAKVTDSVSRK--------TS-YLVVGENPGSKLEKARALGVPTLTEEELY 75 (92)
T ss_dssp CCSSTTCEEECSTTTTSCHHHHHHHHHHTTCEEESCCSSS--------CC-CBEECSSSSTTHHHHHCSSSCCEEHHHHH
T ss_pred CCCcCCcEEEEecCCCCCHHHHHHHHHHcCCEEeCcccCC--------ee-EEEeCCCCChHHHHHHHcCCcEEeHHHHH
Confidence 3579999999999876689999999999999998765332 12 44444433355566677899999999999
Q ss_pred HHHh
Q 002369 906 NGMV 909 (930)
Q Consensus 906 dSIL 909 (930)
+.|-
T Consensus 76 ~~l~ 79 (92)
T 1l7b_A 76 RLLE 79 (92)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9875
No 60
>3ef1_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, BEF3, acylphosphate analog, cobalt, magnesium; HET: BFD; 2.15A {Schizosaccharomyces pombe}
Probab=97.33 E-value=0.00031 Score=79.66 Aligned_cols=87 Identities=15% Similarity=0.190 Sum_probs=66.3
Q ss_pred CCCCCCceEEEeCCC----CCCHHHHHHHHHhCCcEEEeccCcccccCCCCCCcEEEEecCCchhccHHHHhc-CCeEEe
Q 002369 826 HPLLKDQRVLITPNI----KPSKETISSLIKSVHGQAVERLGRSALKDDKLPDDLLILSCEEDYEICEPFLEK-GAAVYS 900 (930)
Q Consensus 826 ~~LFkG~rfyItp~v----kPske~L~~LIeagGGkVV~~~prs~lKd~~~pd~~IVISceeD~~~~~~ll~~-Gi~VVS 900 (930)
.++|.|+.|+|++.. .+.+..+..+|+..||.+...... ...+||........+....+. |++||+
T Consensus 350 ~~~L~G~~IvfSG~~p~~~~~~r~~l~~~~~~lGa~~~~~vs~---------~vTHLVa~~~~t~K~~~A~~~g~IkIVs 420 (442)
T 3ef1_A 350 QKVLKGCRLLFSGVIPLGVDVLSSDIAKWAMSFGAEVVLDFSV---------PPTHLIAAKIRTEKVKKAVSMGNIKVVK 420 (442)
T ss_dssp HTTSTTCEEEEESSSCTTSCSTTSHHHHHHHTTTCEECSSSSS---------CCSEEEECSCCCHHHHHHHHHSSSEEEE
T ss_pred hcccCCcEEEEecccCCCCCccHHHHHHHHHHcCCEEeCCCCC---------CceEEEeCCCCCHHHHHHHhcCCCEEEe
Confidence 468999999999875 345689999999999999876432 234777665555556666666 599999
Q ss_pred HHHHHHHHhc-ccccccccccc
Q 002369 901 SELLLNGMVT-QKLEYERYYMF 921 (930)
Q Consensus 901 sEWILdSIL~-QkLe~E~y~Lf 921 (930)
++||++|+.. .+++-..|.|+
T Consensus 421 ~~WL~dcl~~~krldE~~YlLy 442 (442)
T 3ef1_A 421 LNWLTESLSQWKRLPESDYLLY 442 (442)
T ss_dssp HHHHHHHHHHTSCCCGGGTBCC
T ss_pred HHHHHHHHHcCCcCChhccccC
Confidence 9999999997 45777788764
No 61
>2k6g_A Replication factor C subunit 1; protein, BRCT, DNA binding, activator, alternative splicing, ATP-binding, DNA replication, DNA- binding; NMR {Homo sapiens} PDB: 2k7f_A
Probab=97.09 E-value=0.002 Score=60.23 Aligned_cols=75 Identities=15% Similarity=0.204 Sum_probs=56.7
Q ss_pred CCCCCceEEEeCCCC-CCHHHHHHHHHhCCcEEEeccCcccccCCCCCCcEEEEecCCch-hccHHHHhcCCeEEeHHHH
Q 002369 827 PLLKDQRVLITPNIK-PSKETISSLIKSVHGQAVERLGRSALKDDKLPDDLLILSCEEDY-EICEPFLEKGAAVYSSELL 904 (930)
Q Consensus 827 ~LFkG~rfyItp~vk-Pske~L~~LIeagGGkVV~~~prs~lKd~~~pd~~IVISceeD~-~~~~~ll~~Gi~VVSsEWI 904 (930)
..|.|++|+||+... -++++++++|+..||+|....... .+ +||.+++.- ..+....+.|++|++.+||
T Consensus 31 ~~l~G~~~v~TG~l~~~~R~e~~~~i~~~Gg~v~~sVSkk--------Td-~LV~G~~~g~sK~~kA~~lgI~Ii~E~~f 101 (109)
T 2k6g_A 31 NCLEGLIFVITGVLESIERDEAKSLIERYGGKVTGNVSKK--------TN-YLVMGRDSGQSKSDKAAALGTKIIDEDGL 101 (109)
T ss_dssp TTTTTCEEEEESBCSSCCHHHHHHHHHHTTCEEESSCCTT--------CC-EEEECBCCCHHHHHHHHHHTCEEECHHHH
T ss_pred CCCCCCEEEEeeeCCCCCHHHHHHHHHHcCCEeeCcccCC--------ce-EEEECCCCChHHHHHHHHcCCeEEeHHHH
Confidence 479999999999874 479999999999999998765332 13 444444332 4455666789999999999
Q ss_pred HHHHhc
Q 002369 905 LNGMVT 910 (930)
Q Consensus 905 LdSIL~ 910 (930)
++.|-.
T Consensus 102 ~~ll~~ 107 (109)
T 2k6g_A 102 LNLIRN 107 (109)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 998743
No 62
>2ebu_A Replication factor C subunit 1; A/B/A 3 layers, parallel beta-sheet, DNA replication, clamp loader, RFC1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.99 E-value=0.0021 Score=60.48 Aligned_cols=75 Identities=16% Similarity=0.212 Sum_probs=57.0
Q ss_pred CCCCCceEEEeCCCC-CCHHHHHHHHHhCCcEEEeccCcccccCCCCCCcEEEEecCCch-hccHHHHhcCCeEEeHHHH
Q 002369 827 PLLKDQRVLITPNIK-PSKETISSLIKSVHGQAVERLGRSALKDDKLPDDLLILSCEEDY-EICEPFLEKGAAVYSSELL 904 (930)
Q Consensus 827 ~LFkG~rfyItp~vk-Pske~L~~LIeagGGkVV~~~prs~lKd~~~pd~~IVISceeD~-~~~~~ll~~Gi~VVSsEWI 904 (930)
..|.|++|+|++... .++++++++|+..||+|....... .+ +||.+++.- ..+....+.|++|++.+||
T Consensus 21 ~~l~G~~~v~TG~l~~~~R~e~~~~i~~~Ggkv~~sVSkk--------Td-~LV~G~~~g~sKl~KA~~lgI~IisE~~f 91 (112)
T 2ebu_A 21 NCLEGLIFVITGVLESIERDEAKSLIERYGGKVTGNVSKK--------TN-YLVMGRDSGQSKSDKAAALGTKIIDEDGL 91 (112)
T ss_dssp SSSTTCEEEECSCCSSSCHHHHHHHHHHTTCEECSSCCSS--------CC-EEEECSSCCSHHHHHHHHHTCEEEEHHHH
T ss_pred CCcCCCEEEEeeeCCCCCHHHHHHHHHHcCCEEeccccCC--------ee-EEEecCCCChHHHHHHHHcCCeEEeHHHH
Confidence 469999999999874 479999999999999998765332 13 444454332 4455666789999999999
Q ss_pred HHHHhc
Q 002369 905 LNGMVT 910 (930)
Q Consensus 905 LdSIL~ 910 (930)
++.|-.
T Consensus 92 ~~ll~~ 97 (112)
T 2ebu_A 92 LNLIRT 97 (112)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 998753
No 63
>2cok_A Poly [ADP-ribose] polymerase-1; BRCT domain, DNA repair, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2le0_A
Probab=96.89 E-value=0.0019 Score=60.91 Aligned_cols=83 Identities=17% Similarity=0.259 Sum_probs=61.4
Q ss_pred CCCCCCceEEEeCCCCCCHHHHHHHHHhCCcEEEeccCcccccCCCCCCcEEEEecCC---chhccHHHHhcCCeEEeHH
Q 002369 826 HPLLKDQRVLITPNIKPSKETISSLIKSVHGQAVERLGRSALKDDKLPDDLLILSCEE---DYEICEPFLEKGAAVYSSE 902 (930)
Q Consensus 826 ~~LFkG~rfyItp~vkPske~L~~LIeagGGkVV~~~prs~lKd~~~pd~~IVIScee---D~~~~~~ll~~Gi~VVSsE 902 (930)
..+|.|++|.|++....++++++++|+..||+|....... ..+||++++ .-..+....+.|++|++.+
T Consensus 8 ~~~l~G~~~ViTG~l~~~R~e~k~~ie~~Ggkv~~sVskk---------T~~lV~g~~~e~~gsKl~kA~~lgI~IvsE~ 78 (113)
T 2cok_A 8 DKPLSNMKILTLGKLSRNKDEVKAMIEKLGGKLTGTANKA---------SLCISTKKEVEKMNKKMEEVKEANIRVVSED 78 (113)
T ss_dssp CCSSSSCEEEECSCCSSCHHHHHHHHHHTTCEEESCSTTC---------SEEECCHHHHHHCCHHHHHHHHTTCCEECTH
T ss_pred CCCcCCCEEEEEecCCCCHHHHHHHHHHCCCEEcCccccC---------ccEEEECCCCCCCChHHHHHHHCCCcEEeHH
Confidence 3579999999999887689999999999999998765332 236666621 1133455667899999999
Q ss_pred H----------HHHHHhcccc-cccc
Q 002369 903 L----------LLNGMVTQKL-EYER 917 (930)
Q Consensus 903 W----------ILdSIL~QkL-e~E~ 917 (930)
| +.++|..+.+ +|+.
T Consensus 79 ~l~~~~~~~~~~~~~i~k~~i~~w~~ 104 (113)
T 2cok_A 79 FLQDVSASTKSLQELFLAHILSSWGA 104 (113)
T ss_dssp HHHHHHSCCSCHHHHHHHTBCSSCCC
T ss_pred HHHHHHhhchhHHHHHHHhcCCCCCC
Confidence 9 6777776664 4654
No 64
>4gns_A Chitin biosynthesis protein CHS5; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=96.84 E-value=0.0026 Score=64.29 Aligned_cols=95 Identities=21% Similarity=0.290 Sum_probs=73.8
Q ss_pred chhhhhccCCCeEEEEcCCCCHHH--HHHHHHHHHHcCCEEecc-CC-CceEEEeCCC---CCcHHHHHHHHCCCCEecH
Q 002369 711 KDLRKRRDMASIQVLFSHHLDEDI--IKQQKKILDRLGASEVSS-IT-DATHFVTDIF---VRTRNMLEAIASGKPVVTH 783 (930)
Q Consensus 711 Kdsr~rk~ms~vrVlFSG~~dee~--~k~LKkiIkkLGG~Vadd-is-k~THLVa~k~---~RT~KfL~AIA~GkpIVSp 783 (930)
-++-++.+|+++.||+.-+.+-.. .-++.+.+...|+.-... +. +.||+|++.+ .-...++.|--.++|||.|
T Consensus 154 lrthkmtdmsgitvclgpldplkeisdlqisqclshigarplqrhvaidtthfvcndldneesneelirakhnnipivrp 233 (290)
T 4gns_A 154 LRTHKMTDMSGITVCLGPLDPLKEISDLQISQCLSHIGARPLQRHVAIDTTHFVCNDLDNEESNEELIRAKHNNIPIVRP 233 (290)
T ss_dssp EECCCTTCCTTCCEEECCCCGGGTCCHHHHHHHHHHTTCCCCBSSCCTTCCEEECSCCTTCTTCHHHHHHHHTTCCEECT
T ss_pred eeecccccccCceEEecCCChhhhhhhccHHHHHHHhCCchhhheeeeecceeeecCCCcccchHHHHhhhccCCCccCH
Confidence 355677899999999977643211 124677899999975443 33 8999999864 4578899999999999999
Q ss_pred HHHHHHHHhCCCCCCcCcccCC
Q 002369 784 LWLESIAQVKIHIDEESYLLRD 805 (930)
Q Consensus 784 ~WL~eClkagk~VDEe~YeL~D 805 (930)
+|+.+|--..+++....|.+..
T Consensus 234 ewvracevekrivgvrgfylda 255 (290)
T 4gns_A 234 EWVRACEVEKRIVGVRGFYLDA 255 (290)
T ss_dssp HHHHHHHHTTSCCCSGGGBTTS
T ss_pred HHHHHHhhhheeeeeeeEEEcc
Confidence 9999999999999888876653
No 65
>3al2_A DNA topoisomerase 2-binding protein 1; BRCT domain, protein binding, DNA binding protein; HET: DNA MSE; 2.00A {Homo sapiens} PDB: 3al3_A*
Probab=96.61 E-value=0.0033 Score=65.35 Aligned_cols=87 Identities=18% Similarity=0.213 Sum_probs=68.1
Q ss_pred ccCCCeEEEEcCCCCHHHHHHHHHHHHHcCCEEeccC-----CCceEEEeCCC--C---CcHHHHHHHHCCCCEecHHHH
Q 002369 717 RDMASIQVLFSHHLDEDIIKQQKKILDRLGASEVSSI-----TDATHFVTDIF--V---RTRNMLEAIASGKPVVTHLWL 786 (930)
Q Consensus 717 k~ms~vrVlFSG~~dee~~k~LKkiIkkLGG~Vaddi-----sk~THLVa~k~--~---RT~KfL~AIA~GkpIVSp~WL 786 (930)
+-+.+++|+|.+- ....+.++.+|+.-||.|.... .+.||++++.. . ...+|..+...|+|||+++||
T Consensus 134 ~lF~g~~v~l~~~--~~~~~~l~~ii~agGg~vl~~~~~~~~~~~t~~~vd~~~~~~~~~~~~~~~~~~~~i~~v~~ewl 211 (235)
T 3al2_A 134 GAFSGWKVILHVD--QSREAGFKRLLQSGGAKVLPGHSVPLFKEATHLFSDLNKLKPDDSGVNIAEAAAQNVYCLRTEYI 211 (235)
T ss_dssp STTTTCEEEEECC--HHHHHHHHHHHHHTTCEECSSCCGGGGGGCSEEEECC--------CCCHHHHHHTTCEEEETHHH
T ss_pred CCCCCcEEEEecC--CCcHHHHHHHHHcCCcEEecCCCCCccccCceEEEecccCCccchhHHHHHHHHcCCcEEcHHHH
Confidence 4588999988874 3334678999999999998653 35799887631 1 113677778899999999999
Q ss_pred HHHHHhCCCCCCcCcccCC
Q 002369 787 ESIAQVKIHIDEESYLLRD 805 (930)
Q Consensus 787 ~eClkagk~VDEe~YeL~D 805 (930)
.+++-.....+.+.|.|..
T Consensus 212 ld~i~~~~~~~~~~y~l~~ 230 (235)
T 3al2_A 212 ADYLMQESPPHVENYCLPE 230 (235)
T ss_dssp HHHHHCSSCCCHHHHBCGG
T ss_pred HHHHhcCCCCChhheEccc
Confidence 9999999999999998864
No 66
>3sqd_A PAX-interacting protein 1; tandem BRCT domains, cell cycle; HET: SEP; 2.15A {Homo sapiens}
Probab=96.42 E-value=0.0032 Score=64.79 Aligned_cols=87 Identities=10% Similarity=-0.022 Sum_probs=62.6
Q ss_pred CCCCCCceEEEeCCCCCCHHHHHHHHHhCCcEEEeccCcccccCCCCCCcEEEEecCC-chhccHHHHhcCCeEEeHHHH
Q 002369 826 HPLLKDQRVLITPNIKPSKETISSLIKSVHGQAVERLGRSALKDDKLPDDLLILSCEE-DYEICEPFLEKGAAVYSSELL 904 (930)
Q Consensus 826 ~~LFkG~rfyItp~vkPske~L~~LIeagGGkVV~~~prs~lKd~~~pd~~IVIScee-D~~~~~~ll~~Gi~VVSsEWI 904 (930)
...+.|.+|++++......+.+..+|+..||.++..... -.+||+... ....+...+..|.+||+++||
T Consensus 11 ~~~~~~~~i~~SG~~~~~~~~l~~~i~~lGg~v~~~~~~----------~THLI~~~~~rT~K~l~A~~~g~~IVs~~Wl 80 (219)
T 3sqd_A 11 LTPELTPFVLFTGFEPVQVQQYIKKLYILGGEVAESAQK----------CTHLIASKVTRTVKFLTAISVVKHIVTPEWL 80 (219)
T ss_dssp CCGGGCCEEEECSCCHHHHHHHHHHHHHTTCEECSSGGG----------CSEEECSSCCCCHHHHHHTTTCSEEECHHHH
T ss_pred cCCCCCeEEEEeCCChHHHHHHHHHHHHCCCEEeCCCCC----------ceEEEECCCCCCHHHHHHHHcCCCEecHHHH
Confidence 356899999999865545678999999999998765422 236665431 122233445679999999999
Q ss_pred HHHHhcc-ccccccccccc
Q 002369 905 LNGMVTQ-KLEYERYYMFI 922 (930)
Q Consensus 905 LdSIL~Q-kLe~E~y~Lf~ 922 (930)
.+|+-.. .++.+.|.|-.
T Consensus 81 ~~c~~~~~~l~e~~y~l~d 99 (219)
T 3sqd_A 81 EECFRCQKFIDEQNYILRD 99 (219)
T ss_dssp HHHHHHTSCCCSGGGBCCC
T ss_pred HHHHHcCCCCChHhccCCC
Confidence 9999864 46778887754
No 67
>2coe_A Deoxynucleotidyltransferase, terminal variant; BRCT domain, DNA polymerase, teminal deoxynucleotidyltransferase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.37 E-value=0.011 Score=56.30 Aligned_cols=87 Identities=13% Similarity=0.057 Sum_probs=60.9
Q ss_pred CCCCCCceEEEeCCCCC--CHHHHHHHHHhCCcEEEeccCcccccCCCCCCcEEEEecCCchhccHHHHh-------cCC
Q 002369 826 HPLLKDQRVLITPNIKP--SKETISSLIKSVHGQAVERLGRSALKDDKLPDDLLILSCEEDYEICEPFLE-------KGA 896 (930)
Q Consensus 826 ~~LFkG~rfyItp~vkP--ske~L~~LIeagGGkVV~~~prs~lKd~~~pd~~IVISceeD~~~~~~ll~-------~Gi 896 (930)
..+|.|+++||.+.-.. ..+.+..++...||.|+...... -.+||+.+.+...+..+++ .+.
T Consensus 18 ~~~F~g~~iy~v~~~~g~~R~~~l~~l~r~~G~~V~~~ls~~---------VTHVVve~~~~~e~~~~l~~~~l~~~~~~ 88 (120)
T 2coe_A 18 DIKFQDLVVFILEKKMGTTRRALLMELARRKGFRVENELSDS---------VTHIVAENNSGSDVLEWLQAQKVQVSSQP 88 (120)
T ss_dssp CCSCTTCEEEEECTTTCHHHHHHHHHHHHHHTCEECSSCCTT---------CCEEEESSCCHHHHHHHHHHCCCCCSSCC
T ss_pred ccccCCeEEEEeecccchHHHHHHHHHHHHcCCEEeeccCCC---------cCEEEecCCCHHHHHHHHhcccccccccc
Confidence 56999999999765433 26789999999999998765221 2477765544444444444 257
Q ss_pred eEEeHHHHHHHHhcccc-cccccccc
Q 002369 897 AVYSSELLLNGMVTQKL-EYERYYMF 921 (930)
Q Consensus 897 ~VVSsEWILdSIL~QkL-e~E~y~Lf 921 (930)
.+|+.+||.+|+-..++ +-+.+.++
T Consensus 89 ~lv~i~Wl~esmk~g~lv~ee~~~~l 114 (120)
T 2coe_A 89 ELLDVSWLIECIGAGKPVEMTGKHQL 114 (120)
T ss_dssp EEEEHHHHHHHHHTTSCCCCSSSSBC
T ss_pred EEeecHHHHHHHHcCCccCcccceEe
Confidence 89999999999997554 55444433
No 68
>2l42_A DNA-binding protein RAP1; BRCT domain, protein binding; NMR {Saccharomyces cerevisiae}
Probab=96.09 E-value=0.0025 Score=59.08 Aligned_cols=66 Identities=21% Similarity=0.336 Sum_probs=54.0
Q ss_pred HHHHHHHHHHcCCEEeccCCCc---eEEEeCCCCCcHHHHHHHHCCCCEecHHHHHHHHHhCCCCCCcCcccCCchhh
Q 002369 735 IKQQKKILDRLGASEVSSITDA---THFVTDIFVRTRNMLEAIASGKPVVTHLWLESIAQVKIHIDEESYLLRDTKKE 809 (930)
Q Consensus 735 ~k~LKkiIkkLGG~Vaddisk~---THLVa~k~~RT~KfL~AIA~GkpIVSp~WL~eClkagk~VDEe~YeL~D~e~E 809 (930)
.++|+.+|...||.|.....+- .++|+....-| +.|.|+|.||.+|++.+.+++-.+|++.-.+.|
T Consensus 32 ~d~L~~lI~~nGG~Vl~~lP~~s~~~~yVVSpyN~t---------~LpTVtpTYI~aC~~~nTLLnv~~YLvp~d~~~ 100 (106)
T 2l42_A 32 IDQLARLIRANGGEVLDSKPRESKENVFIVSPYNHT---------NLPTVTPTYIKACCQSNSLLNMENYLVPYDNLE 100 (106)
T ss_dssp HHHHHHHHHTTTSCCCEECCCCCSSCCCCBCTTCCC---------SSSBCCTTHHHHHHHSTTSCGGGGCCBCSCC--
T ss_pred HHHHHHHHHhcCcEEhhhCcccccCCeEEEeCCCCC---------CCccccHHHHHHHHhcCceecccccccCchhhc
Confidence 4678999999999998877532 47777777644 899999999999999999999999998765544
No 69
>2jw5_A DNA polymerase lambda; BRCT domain, family X polymerase, nonhomologous END joining (NHEJ), DNA damage, DNA repair, DNA replication, DNA synthesis; HET: DNA; NMR {Homo sapiens}
Probab=96.04 E-value=0.0054 Score=56.75 Aligned_cols=88 Identities=22% Similarity=0.226 Sum_probs=59.2
Q ss_pred CCCCCCceEEEeCCCC--CCHHHHHHHHHhCCcEEEeccCcccccCCCCCCcEEEEecC-CchhccHHHHh-----cCCe
Q 002369 826 HPLLKDQRVLITPNIK--PSKETISSLIKSVHGQAVERLGRSALKDDKLPDDLLILSCE-EDYEICEPFLE-----KGAA 897 (930)
Q Consensus 826 ~~LFkG~rfyItp~vk--Pske~L~~LIeagGGkVV~~~prs~lKd~~~pd~~IVISce-eD~~~~~~ll~-----~Gi~ 897 (930)
..+|+|++||+.+... +..+.+..+++..||.++..... .-.+||..+ .+.......++ .++.
T Consensus 9 ~~~F~g~~v~~~p~~~~~~r~~i~~~~a~~~Ga~v~~~~~~---------~vTHVVvd~~~s~~~~l~~l~~~~l~~~~~ 79 (106)
T 2jw5_A 9 EEWLSSLRAHVVRTGIGRARAELFEKQIVQHGGQLCPAQGP---------GVTHIVVDEGMDYERALRLLRLPQLPPGAQ 79 (106)
T ss_dssp GGCGGGSCCCBCTTTCCSSSTTHHHHHHHHTTCCCCSTTCT---------TCCEEEECSSSCHHHHHHHTTCSSCCSSCE
T ss_pred cCEeCCeEEEEEecCCchHHHHHHHHHHHHcCCEEeeccCC---------CccEEEEcCCCCHHHHHHHHhhcccCCCcE
Confidence 3599999999865432 34677888999999999876422 224666653 22322122222 3567
Q ss_pred EEeHHHHHHHHhccc-cccccccccc
Q 002369 898 VYSSELLLNGMVTQK-LEYERYYMFI 922 (930)
Q Consensus 898 VVSsEWILdSIL~Qk-Le~E~y~Lf~ 922 (930)
+|+.+||.+||-..+ |+-+.|.|+.
T Consensus 80 iV~~~Wv~dci~~~~llde~~y~~~~ 105 (106)
T 2jw5_A 80 LVKSAWLSLCLQERRLVDVAGFSIFI 105 (106)
T ss_dssp EEEHHHHHHHHHTCSCCCGGGTBCSC
T ss_pred EecCchHHHHHhcCcccCcccccccC
Confidence 999999999999744 6778887764
No 70
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=96.00 E-value=0.0011 Score=78.56 Aligned_cols=74 Identities=20% Similarity=0.215 Sum_probs=0.0
Q ss_pred cCCCeEEEEcCCCCHHHHHHHHHHHHHcCCEEeccCC-CceEEEeCCCCCcHHHHHHHHCCCCEecHHHHHHHHHhC
Q 002369 718 DMASIQVLFSHHLDEDIIKQQKKILDRLGASEVSSIT-DATHFVTDIFVRTRNMLEAIASGKPVVTHLWLESIAQVK 793 (930)
Q Consensus 718 ~ms~vrVlFSG~~dee~~k~LKkiIkkLGG~Vaddis-k~THLVa~k~~RT~KfL~AIA~GkpIVSp~WL~eClkag 793 (930)
.+.+..|+|||.... .+..++.+|+.+||+|+.+++ ++++||++.-. +-|+-.|...|++||+.+|+.+.+..+
T Consensus 587 ~l~G~~~v~TG~l~~-~R~e~~~~i~~~Ggkv~~sVSkkTd~lV~G~~~-gsKl~KA~~lgI~Ii~E~~f~~~l~~~ 661 (667)
T 1dgs_A 587 LLSGLTFVLTGELSR-PREEVKALLGRLGAKVTDSVSRKTSYLVVGENP-GSKLEKARALGVAVLTEEEFWRFLKEK 661 (667)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred ccCCCEEEEeCCCCC-CHHHHHHHHHHcCCEEcCcccCCeeEEEECCCC-ChHHHHHHHCCCeEEeHHHHHHHHhcC
Confidence 488999999998866 567889999999999999998 78999998643 589999999999999999999988755
No 71
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=95.67 E-value=0.0018 Score=76.76 Aligned_cols=73 Identities=16% Similarity=0.157 Sum_probs=0.0
Q ss_pred cCCCeEEEEcCCCCHHHHHHHHHHHHHcCCEEeccCC-CceEEEeCCCCCcHHHHHHHHCCCCEecHHHHHHHHH
Q 002369 718 DMASIQVLFSHHLDEDIIKQQKKILDRLGASEVSSIT-DATHFVTDIFVRTRNMLEAIASGKPVVTHLWLESIAQ 791 (930)
Q Consensus 718 ~ms~vrVlFSG~~dee~~k~LKkiIkkLGG~Vaddis-k~THLVa~k~~RT~KfL~AIA~GkpIVSp~WL~eClk 791 (930)
.+.+..|+|||....-.+..++.+|+.+||.|+.+++ ++++||++.-. +-|+-.|...|++||+.+|+.+.+.
T Consensus 597 ~l~G~~~v~TG~l~~~~R~e~~~~i~~~Ggkv~~sVSkkTd~lV~G~~~-gsKl~KA~~lgI~Ii~E~~f~~~l~ 670 (671)
T 2owo_A 597 PFAGKTVVLTGSLSQMSRDDAKARLVELGAKVAGSVSKKTDLVIAGEAA-GSKLAKAQELGIEVIDEAEMLRLLG 670 (671)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred cccCcEEEEcCCCCCCCHHHHHHHHHHcCCEEeCcccCceeEEEECCCC-ChHHHHHHHCCCcEEcHHHHHHHhc
Confidence 4889999999987653466789999999999999998 78999998643 5899999999999999999988763
No 72
>2dun_A POL MU, DNA polymerase MU; layers A/B/A, parallel beta-sheet of 4 strands, non- homologous END jonting, somatic hypermutation, V(D)J recombination; HET: DNA; NMR {Homo sapiens} PDB: 2htf_A*
Probab=93.91 E-value=0.056 Score=52.49 Aligned_cols=89 Identities=10% Similarity=0.064 Sum_probs=63.4
Q ss_pred CCCCCCceEEEeCCCCC--CHHHHHHHHHhCCcEEEeccCcccccCCCCCCcEEEEecCCchhccHHHHh----------
Q 002369 826 HPLLKDQRVLITPNIKP--SKETISSLIKSVHGQAVERLGRSALKDDKLPDDLLILSCEEDYEICEPFLE---------- 893 (930)
Q Consensus 826 ~~LFkG~rfyItp~vkP--ske~L~~LIeagGGkVV~~~prs~lKd~~~pd~~IVISceeD~~~~~~ll~---------- 893 (930)
...|.|+++||.+.--. -++.|.+|+...|+.|...... .-.+||+...+......+++
T Consensus 8 ~~~F~~v~iyive~kmG~sRr~fL~~la~~kGf~v~~~~S~---------~VTHVV~E~~s~~~~~~~L~~~~~~l~~~~ 78 (133)
T 2dun_A 8 STRFPGVAIYLVEPRMGRSRRAFLTGLARSKGFRVLDACSS---------EATHVVMEETSAEEAVSWQERRMAAAPPGC 78 (133)
T ss_dssp SCSEEEEEEEECHHHHCSHHHHHHHHHHHHHTEEECSSCCT---------TCCEEEESSCCHHHHHHHHHHHHHHSCTTC
T ss_pred ccccCccEEEEecCCcCHHHHHHHHHHHHhcCCEeccccCC---------CceEEEecCCCHHHHHHHHHHhhcccCcCC
Confidence 35899999999865322 2788999999999999876422 23588876666655444441
Q ss_pred cCCeEEeHHHHHHHHhccc-ccccccccccc
Q 002369 894 KGAAVYSSELLLNGMVTQK-LEYERYYMFIV 923 (930)
Q Consensus 894 ~Gi~VVSsEWILdSIL~Qk-Le~E~y~Lf~d 923 (930)
.+..+++..||.+|+-..+ ++.+.+.++..
T Consensus 79 ~~~~lLdisWltecm~~g~pV~~e~~~~l~~ 109 (133)
T 2dun_A 79 TPPALLDISWLTESLGAGQPVPVECRHRLEV 109 (133)
T ss_dssp CCCEEEEHHHHHHHHHHTSCCCCCTTTSCCC
T ss_pred CCcEEeccHHHHHHHhcCCcCCcccceEeec
Confidence 4578999999999998755 56655555544
No 73
>3l41_A BRCT-containing protein 1; BRC1, BRCT domain, tandem BRCT repeat, phosphoserine binding domain, DNA repair, cell division, mitosis; HET: SEP; 1.45A {Schizosaccharomyces pombe} PDB: 3l40_A*
Probab=92.78 E-value=0.091 Score=54.26 Aligned_cols=82 Identities=11% Similarity=0.015 Sum_probs=54.5
Q ss_pred CCCCceEEEeCCCCCCHHHHHHHHHhCCcEEEeccCcccccCCCCCCcEEEEecCC-chhccHHHHhcCCeEEeHHHHHH
Q 002369 828 LLKDQRVLITPNIKPSKETISSLIKSVHGQAVERLGRSALKDDKLPDDLLILSCEE-DYEICEPFLEKGAAVYSSELLLN 906 (930)
Q Consensus 828 LFkG~rfyItp~vkPske~L~~LIeagGGkVV~~~prs~lKd~~~pd~~IVIScee-D~~~~~~ll~~Gi~VVSsEWILd 906 (930)
+=++.+|++++.... ++..+|+..||.|+..... -.+||...- -...+...+..|.+||+++||.+
T Consensus 5 ~~~~~~v~fSG~~~~---~~~~~i~~lGg~v~~~~~~----------~THlV~~~~~RT~K~l~Aia~g~~IVs~~Wl~~ 71 (220)
T 3l41_A 5 ASKRVYITFTGYDKK---PSIDNLKKLDMSITSNPSK----------CTHLIAPRILRTSKFLCSIPYGPCVVTMDWINS 71 (220)
T ss_dssp --CCEEEEECSCSSC---CCCGGGGGGTEEECSCTTT----------CSEEECSSCCCBHHHHHHGGGCCEEECHHHHHH
T ss_pred ccceEEEEEeccCCC---CCcchHhhcceeeccCchh----------hhhhhhhhHhhhcceeecCCCCCeEEEhHHHHh
Confidence 446778888876543 3499999999998775422 236665421 11222333467999999999999
Q ss_pred HHhccc-cccccccccc
Q 002369 907 GMVTQK-LEYERYYMFI 922 (930)
Q Consensus 907 SIL~Qk-Le~E~y~Lf~ 922 (930)
|+-... ++.+.|.|..
T Consensus 72 ~~~~~~~l~e~~y~l~d 88 (220)
T 3l41_A 72 CLKTHEIVDEEPYLLND 88 (220)
T ss_dssp HHHHTSCCCSGGGBCCC
T ss_pred hhhhhhccccCccccCC
Confidence 998755 6777887643
No 74
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=85.09 E-value=0.17 Score=60.21 Aligned_cols=75 Identities=16% Similarity=0.224 Sum_probs=0.0
Q ss_pred CCCCCceEEEeCCCCCCHHHHHHHHHhCCcEEEeccCcccccCCCCCCcEEEEecCCchhccHHHHhcCCeEEeHHHHHH
Q 002369 827 PLLKDQRVLITPNIKPSKETISSLIKSVHGQAVERLGRSALKDDKLPDDLLILSCEEDYEICEPFLEKGAAVYSSELLLN 906 (930)
Q Consensus 827 ~LFkG~rfyItp~vkPske~L~~LIeagGGkVV~~~prs~lKd~~~pd~~IVISceeD~~~~~~ll~~Gi~VVSsEWILd 906 (930)
..|.|++|.||+....++++++.+|+..||+|....... .+ +||.++..-.......+.|++|++.+|+++
T Consensus 586 ~~l~G~~~v~TG~l~~~R~e~~~~i~~~Ggkv~~sVSkk--------Td-~lV~G~~~gsKl~KA~~lgI~Ii~E~~f~~ 656 (667)
T 1dgs_A 586 DLLSGLTFVLTGELSRPREEVKALLGRLGAKVTDSVSRK--------TS-YLVVGENPGSKLEKARALGVAVLTEEEFWR 656 (667)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccCCCEEEEeCCCCCCHHHHHHHHHHcCCEEcCcccCC--------ee-EEEECCCCChHHHHHHHCCCeEEeHHHHHH
Confidence 469999999999876588999999999999998765332 12 444454333444555667999999999999
Q ss_pred HHhc
Q 002369 907 GMVT 910 (930)
Q Consensus 907 SIL~ 910 (930)
.|-.
T Consensus 657 ~l~~ 660 (667)
T 1dgs_A 657 FLKE 660 (667)
T ss_dssp ----
T ss_pred HHhc
Confidence 8754
No 75
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=83.22 E-value=0.23 Score=59.16 Aligned_cols=73 Identities=14% Similarity=0.211 Sum_probs=0.0
Q ss_pred CCCCCceEEEeCCCCC-CHHHHHHHHHhCCcEEEeccCcccccCCCCCCcEEEEecCCchhccHHHHhcCCeEEeHHHHH
Q 002369 827 PLLKDQRVLITPNIKP-SKETISSLIKSVHGQAVERLGRSALKDDKLPDDLLILSCEEDYEICEPFLEKGAAVYSSELLL 905 (930)
Q Consensus 827 ~LFkG~rfyItp~vkP-ske~L~~LIeagGGkVV~~~prs~lKd~~~pd~~IVISceeD~~~~~~ll~~Gi~VVSsEWIL 905 (930)
..|.|++|.||+.... ++++++.+|+..||+|....... .+ +||.++..-.......+.|++|++.+|++
T Consensus 596 ~~l~G~~~v~TG~l~~~~R~e~~~~i~~~Ggkv~~sVSkk--------Td-~lV~G~~~gsKl~KA~~lgI~Ii~E~~f~ 666 (671)
T 2owo_A 596 SPFAGKTVVLTGSLSQMSRDDAKARLVELGAKVAGSVSKK--------TD-LVIAGEAAGSKLAKAQELGIEVIDEAEML 666 (671)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CcccCcEEEEcCCCCCCCHHHHHHHHHHcCCEEeCcccCc--------ee-EEEECCCCChHHHHHHHCCCcEEcHHHHH
Confidence 4699999999998754 78999999999999998765332 12 44444433244455566799999999999
Q ss_pred HHH
Q 002369 906 NGM 908 (930)
Q Consensus 906 dSI 908 (930)
+.|
T Consensus 667 ~~l 669 (671)
T 2owo_A 667 RLL 669 (671)
T ss_dssp ---
T ss_pred HHh
Confidence 865
No 76
>3oq4_A DBF4, protein DNA52; DDK, BRCT, RAD53, replication checkpoint, FHA domain, regula subunit of DDK, CDC7, phosphorylation, nuclear; 2.40A {Saccharomyces cerevisiae}
Probab=71.60 E-value=10 Score=36.91 Aligned_cols=57 Identities=18% Similarity=-0.021 Sum_probs=46.1
Q ss_pred HHHHHHHHHcCCEEeccCC-CceEEEeCCCC-------CcHHHHHHHHCCCCEecHHHHHHHHHh
Q 002369 736 KQQKKILDRLGASEVSSIT-DATHFVTDIFV-------RTRNMLEAIASGKPVVTHLWLESIAQV 792 (930)
Q Consensus 736 k~LKkiIkkLGG~Vaddis-k~THLVa~k~~-------RT~KfL~AIA~GkpIVSp~WL~eClka 792 (930)
+.+++.++.||++|+.-++ ++||||+.+.. -+-=+..|...|+.|=+.+=|..-++.
T Consensus 33 ~llk~~f~~LGa~I~~FFd~~VTiiITrR~~~~~~~~p~~DIL~rAr~~~mKIWs~EKl~RfL~~ 97 (134)
T 3oq4_A 33 DLLKRGFLTLGAQITQFFDTTVTIVITRRSVENIYLLKDTDILSRAKKNYMKVWSYEKAARFLKN 97 (134)
T ss_dssp HHHHHHHHHTTCEEESSCCTTCCEEEESSCGGGGGGSCTTSHHHHHHHTTCEEEEHHHHHHHHHH
T ss_pred HHHHHHHHHcCCEEeeecCCceEEEEeCCcCcccccCCcchHHHHHHHcCCeeeeHHHHHHHHHh
Confidence 4567788899999999887 89999998632 223467788899999999999888777
No 77
>2k2w_A Recombination and DNA repair protein; BRCT domain, cell cycle checkpoint; NMR {Xenopus laevis}
Probab=64.98 E-value=7.1 Score=37.29 Aligned_cols=35 Identities=14% Similarity=0.138 Sum_probs=28.6
Q ss_pred CCCCCCCceEEEeCCCCCCHHHHHHHHHhCCcEEEec
Q 002369 825 KHPLLKDQRVLITPNIKPSKETISSLIKSVHGQAVER 861 (930)
Q Consensus 825 k~~LFkG~rfyItp~vkPske~L~~LIeagGGkVV~~ 861 (930)
+..||+|++|.+...- -.+.|..+|..|||.+.-.
T Consensus 10 ~~~LF~GKtFvFLn~K--Q~kkl~~aV~~~GG~~~l~ 44 (118)
T 2k2w_A 10 RKSIFKDKVFLFLNAK--QYKKLSPAVLFGGGKTDLL 44 (118)
T ss_dssp CSCSSTTCEEEESCSS--THHHHHHHHHHTTCEEECC
T ss_pred HHhhccCCEEEEeCHH--HHHHHHHHHHhcCceEEec
Confidence 4689999998776432 3789999999999998755
No 78
>3oq0_A DBF4, protein DNA52; DDK, BRCT, RAD53, replication checkpoint, FHA domain, regula subunit of DDK, CDC7, phosphorylation, nuclear; 2.70A {Saccharomyces cerevisiae}
Probab=58.62 E-value=39 Score=33.55 Aligned_cols=57 Identities=16% Similarity=-0.051 Sum_probs=45.4
Q ss_pred HHHHHHHHHcCCEEeccCC-CceEEEeCCC-------CCcHHHHHHHHCCCCEecHHHHHHHHHh
Q 002369 736 KQQKKILDRLGASEVSSIT-DATHFVTDIF-------VRTRNMLEAIASGKPVVTHLWLESIAQV 792 (930)
Q Consensus 736 k~LKkiIkkLGG~Vaddis-k~THLVa~k~-------~RT~KfL~AIA~GkpIVSp~WL~eClka 792 (930)
+.+++.++.||++|+.-++ ++||||+.+. .-+-=+..|...|+.|=+.+=|..-++.
T Consensus 50 ~llkk~f~~LGa~I~~FFd~~VTiIITrR~~~~~~~yp~~DIL~rAr~~~mKIWs~EKl~RfL~~ 114 (151)
T 3oq0_A 50 DLLKRGFLTLGAQITQFFDTTVTIVITRRSVENIYLLKDTDILSRAKKNYMKVWSYEKAARFLKN 114 (151)
T ss_dssp HHHHHHHHHHTCEEESSCCTTCCEEEESSCGGGGGGSCTTSHHHHHHHTTCEEEEHHHHHHHHHT
T ss_pred HHHHHHHHHcCCEEeeecCCceEEEEeCCcCcccccCCcchHHHHHHHcCCeeecHHHHHHHHHh
Confidence 3456778899999999887 8999999763 2233567788899999999999888776
No 79
>3qbz_A DDK kinase regulatory subunit DBF4; FHA domain,RAD53, replication checkpoint, cell cycle; 2.69A {Saccharomyces cerevisiae}
Probab=53.93 E-value=13 Score=37.20 Aligned_cols=81 Identities=15% Similarity=0.014 Sum_probs=52.3
Q ss_pred cchhhhhccCC-CeEEEEcCCCCHH----HH-------HHHHHHHHHcCCEEeccCC-CceEEEeCCCCCcHH-------
Q 002369 710 LKDLRKRRDMA-SIQVLFSHHLDED----II-------KQQKKILDRLGASEVSSIT-DATHFVTDIFVRTRN------- 769 (930)
Q Consensus 710 ~Kdsr~rk~ms-~vrVlFSG~~dee----~~-------k~LKkiIkkLGG~Vaddis-k~THLVa~k~~RT~K------- 769 (930)
|+..+ |+-|. ..+|.|=+..++. .. +.+++.+..||+.|+.-++ ++||||+.+..-..+
T Consensus 51 WQ~~W-Rkifk~~~vfYFDt~~~~~~~~~~k~kl~K~~~llkr~f~~LGA~I~~FFd~~VTiVIT~R~i~~~~~~~~~Di 129 (160)
T 3qbz_A 51 WQTNW-KKIMKRDSRIYFDITDDVEMNTYNKSKMDKRRDLLKRGFLTLGAQITQFFDTTVTIVITRRSVENIYLLKDTDI 129 (160)
T ss_dssp HHHHH-HHHHHHHCEEEECCCCSSCCCHHHHHHHHHHHHHHHHHHHTTTCEEESSCCTTCCEEEESSCSSCGGGSCTTSH
T ss_pred HHHHH-HHhCccCcEEEecCCChhhhhHHHHHHHHHHHHHHHHHHHHcCCEeeeeccCCeEEEEecCcCcccccCCchhH
Confidence 66664 45676 7899996554320 01 2234566799999999997 899999986433333
Q ss_pred HHHHHHCCCCEecHHHHHHHHH
Q 002369 770 MLEAIASGKPVVTHLWLESIAQ 791 (930)
Q Consensus 770 fL~AIA~GkpIVSp~WL~eClk 791 (930)
|..|-..++-|=+++=+..-++
T Consensus 130 l~~A~~~~mKVW~yeK~~RFLk 151 (160)
T 3qbz_A 130 LSRAKKNYMKVWSYEKAARFLK 151 (160)
T ss_dssp HHHHHHTTCEEEEHHHHHHHHH
T ss_pred HHHHHHcCceecchHHHHHHHH
Confidence 5556666777766665544433
No 80
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=35.09 E-value=74 Score=29.83 Aligned_cols=66 Identities=9% Similarity=0.116 Sum_probs=43.1
Q ss_pred CCeEEEEcCCCCHHHHHHHHHHHHHcC-CEE-eccC---------CCceEEEeCCC--CCcHHHHHHHHCCCCEecHHH
Q 002369 720 ASIQVLFSHHLDEDIIKQQKKILDRLG-ASE-VSSI---------TDATHFVTDIF--VRTRNMLEAIASGKPVVTHLW 785 (930)
Q Consensus 720 s~vrVlFSG~~dee~~k~LKkiIkkLG-G~V-addi---------sk~THLVa~k~--~RT~KfL~AIA~GkpIVSp~W 785 (930)
.++++++-|-.+.+..+.+++.++.+| ..+ ...+ ..+..+|.+.. .-..+++.|+++|+|||...+
T Consensus 69 ~~~~l~i~G~~~~~~~~~l~~~~~~~~~v~~~~g~~~~~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea~a~G~PvI~~~~ 147 (200)
T 2bfw_A 69 QEMRFIIIGKGDPELEGWARSLEEKHGNVKVITEMLSREFVRELYGSVDFVIIPSYFEPFGLVALEAMCLGAIPIASAV 147 (200)
T ss_dssp GGEEEEEECCBCHHHHHHHHHHHHHCTTEEEECSCCCHHHHHHHHTTCSEEEECCSCCSSCHHHHHHHHTTCEEEEESC
T ss_pred CCeEEEEECCCChHHHHHHHHHHHhcCCEEEEeccCCHHHHHHHHHHCCEEEECCCCCCccHHHHHHHHCCCCEEEeCC
Confidence 357788877655333456777888886 233 2222 24666776542 226899999999999998764
No 81
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}
Probab=24.80 E-value=2.2e+02 Score=25.67 Aligned_cols=60 Identities=25% Similarity=0.315 Sum_probs=40.6
Q ss_pred CeEEEEcCCCCHHHHHHHHHHHHHcCCEEeccC----------CCceEEEeCCC--CCcHHHHHHHHCCC-CEec
Q 002369 721 SIQVLFSHHLDEDIIKQQKKILDRLGASEVSSI----------TDATHFVTDIF--VRTRNMLEAIASGK-PVVT 782 (930)
Q Consensus 721 ~vrVlFSG~~dee~~k~LKkiIkkLGG~Vaddi----------sk~THLVa~k~--~RT~KfL~AIA~Gk-pIVS 782 (930)
++++.+-|-.+. .+.+++.++.+|..|.-.+ ..+..+|.+.. .-..+++.|+++|+ |||.
T Consensus 32 ~~~l~i~G~g~~--~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~adv~v~ps~~e~~~~~~~Eama~G~vPvi~ 104 (166)
T 3qhp_A 32 DIVLLLKGKGPD--EKKIKLLAQKLGVKAEFGFVNSNELLEILKTCTLYVHAANVESEAIACLEAISVGIVPVIA 104 (166)
T ss_dssp GEEEEEECCSTT--HHHHHHHHHHHTCEEECCCCCHHHHHHHHTTCSEEEECCCSCCCCHHHHHHHHTTCCEEEE
T ss_pred CeEEEEEeCCcc--HHHHHHHHHHcCCeEEEeecCHHHHHHHHHhCCEEEECCcccCccHHHHHHHhcCCCcEEe
Confidence 677777775433 2457778888886543221 24666777642 23689999999998 9998
No 82
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=21.23 E-value=2e+02 Score=29.92 Aligned_cols=65 Identities=11% Similarity=0.171 Sum_probs=43.8
Q ss_pred CCeEEEEcCCCCHHHHHHHHHHHHHcCCEEe-cc-C---------CCceEEEeCCC--CCcHHHHHHHHCCCCEecHH
Q 002369 720 ASIQVLFSHHLDEDIIKQQKKILDRLGASEV-SS-I---------TDATHFVTDIF--VRTRNMLEAIASGKPVVTHL 784 (930)
Q Consensus 720 s~vrVlFSG~~dee~~k~LKkiIkkLGG~Va-dd-i---------sk~THLVa~k~--~RT~KfL~AIA~GkpIVSp~ 784 (930)
.++++++-|-.+....+.++++++.+|..+. .. + ..+..+|.+.. .-..+++.|+++|+|||..+
T Consensus 284 ~~~~l~i~G~g~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~adv~v~ps~~e~~~~~~~EAma~G~Pvi~s~ 361 (439)
T 3fro_A 284 QEMRFIIIGKGDPELEGWARSLEEKHGNVKVITEMLSREFVRELYGSVDFVIIPSYFEPFGLVALEAMCLGAIPIASA 361 (439)
T ss_dssp GGEEEEEECCCCHHHHHHHHHHHHHCTTEEEECSCCCHHHHHHHHTTCSEEEECBSCCSSCHHHHHHHHTTCEEEEES
T ss_pred CCeEEEEEcCCChhHHHHHHHHHhhcCCEEEEcCCCCHHHHHHHHHHCCEEEeCCCCCCccHHHHHHHHCCCCeEEcC
Confidence 3678888776555433567888888874432 11 1 24667776642 23589999999999999865
Done!