BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002370
(930 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XWU|B Chain B, Crystal Structure Of Importin 13 - Ubc9 Complex
Length = 963
Score = 91.3 bits (225), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 165/791 (20%), Positives = 324/791 (40%), Gaps = 89/791 (11%)
Query: 9 VAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQ 68
V +A+H L +D N+ A +WL+Q Q + AW + +L D+ E+++F A
Sbjct: 26 VEKALHQLYYDPNIENKNLAQKWLMQAQVSPQAWHFSWQLLQPDKVP-----EIQYFGAS 80
Query: 69 ILKRKIQNEGYYLQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRAVEHGKP 128
L KI + + ++L L RF+SG +LT++C+AL++L L + P
Sbjct: 81 ALHIKISRYWSDIPTDQYESLKAQLFTQITRFASGSKIVLTRLCVALASLALSMMPDAWP 140
Query: 129 -----IEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDSQASDCNISSAHRSQYGQELL 183
+ +LF + + +A+LE+LTVLPEE S+ R+ E
Sbjct: 141 CAVADMVRLFQAEDSPVDGQGRCLALLELLTVLPEEFQTSRLPQYR-KGLVRTSLAVECG 199
Query: 184 SHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLL 243
+ P++ + L Q S +K+L+C SWV+ E+ A L+
Sbjct: 200 AVFPLLEQLLQQPSSPSC----------VRQKVLKCFSSWVQ----LEVPLQDCEA--LI 243
Query: 244 NFVFNSLQVQSSFDVAIEVLVELVGRHEG--LPQALLCRVPFX--XXXXXXXXXTDGDEK 299
F +LQ FD ++E +V + + + LL +P +GD +
Sbjct: 244 QAAFAALQDSELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGDME 303
Query: 300 VIGGLACLMSEIGQAAPSLI---VEASPEALALADALLSCVAFPSE---DWEIADSTLQF 353
G+ + +G+ + VE LAL + ++ C P + + TL F
Sbjct: 304 TSHGICRIAVALGENHSRALLDQVEHWQSFLALVNMIMFCTGIPGHYPVNETTSSLTLTF 363
Query: 354 WSTLASYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFNDDGMVDLPDGL 413
W TL IL + A+ + + ++ V+ L+D LL +AQ D +
Sbjct: 364 WYTLQDDILSFE---AEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGFWSSDEKEQF 420
Query: 414 VQFRMNLVELLVDICQLLRSATFIQKVF--FGS-WGSANVPIPWKEVETKLFALNVVSEV 470
+R+++ + L+ + ++L A + ++ G S+ P W+ E L+ ++E
Sbjct: 421 RIYRVDISDTLMYVYEML-GAELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAET 479
Query: 471 VLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYR------SLAD----VIGSYSKWI 520
+ + S+ + G + ++ R LAD IG+ S+W+
Sbjct: 480 I-------------------DVNYSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWL 520
Query: 521 SAFQTNARPLLLFLAAGISEAVSSNACASALRKICEDASALIDEPSNLEILMWIGEALEK 580
+ +L + + S + S L+KIC + + P I+ + L K
Sbjct: 521 ADHPVMINSVLPLVLHALGNPELSVSSVSTLKKICRECKYDL-PPYAANIVAVSQDVLMK 579
Query: 581 RHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLID----GDNNHSLI 636
+ ++ A+ +L ++ +E+ NL + L+S + + KL + N +++
Sbjct: 580 QIHKTSQCMWLMQALGFLLSALQVEEILKNLHS-LISPYIQQLEKLAEEIPNPSNKLAIV 638
Query: 637 HNPATYTQILSSATRGLY---RMGTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFR 693
H + + ++ + G LPV P G +P+ +L+ + +++K+
Sbjct: 639 HILGLLSNLFTTLDISHHEDDHEGPELRKLPV-----PQGPNPVVVVLQQVFQLIQKVL- 692
Query: 694 SEHMENGNLSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTNFVSFQNHECYIRTASVVI 753
S+ + + + A C ++++ F ++PQ+ + L + + T +V
Sbjct: 693 SKWLNDAQVVEAVCAIFEKSVKTLLDDFAPMVPQLCEMLGRMYSTIPQASALDLTRQLV- 751
Query: 754 EEFGHKDEYGP 764
F H+ + P
Sbjct: 752 HIFAHEPAHFP 762
>pdb|2X19|B Chain B, Crystal Structure Of Importin13 - Rangtp Complex
Length = 963
Score = 78.6 bits (192), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 165/791 (20%), Positives = 316/791 (39%), Gaps = 89/791 (11%)
Query: 9 VAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQ 68
V +A+H L +D N+ A +WL Q Q + AW + +L D+ E+++F A
Sbjct: 26 VEKALHQLYYDPNIENKNLAQKWLXQAQVSPQAWHFSWQLLQPDKVP-----EIQYFGAS 80
Query: 69 ILKRKIQNEGYYLQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRAVEHGKP 128
L KI + + ++L L RF+SG +LT++C+AL++L L P
Sbjct: 81 ALHIKISRYWSDIPTDQYESLKAQLFTQITRFASGSKIVLTRLCVALASLALSXXPDAWP 140
Query: 129 IE-----KLFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDSQASDCNISSAHRSQYGQELL 183
+LF + + +A+LE+LTVLPEE S+ R+ E
Sbjct: 141 CAVADXVRLFQAEDSPVDGQGRCLALLELLTVLPEEFQTSRLPQYR-KGLVRTSLAVECG 199
Query: 184 SHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLL 243
+ P++ + L Q S +K+L+C SWV+ E+ A L+
Sbjct: 200 AVFPLLEQLLQQPSSPSC----------VRQKVLKCFSSWVQ----LEVPLQDCEA--LI 243
Query: 244 NFVFNSLQVQSSFDVAIEVLVELVGRHEG--LPQALLCRVPFX--XXXXXXXXXTDGDEK 299
F +LQ FD ++E +V + + + LL +P +GD +
Sbjct: 244 QAAFAALQDSELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGDXE 303
Query: 300 VIGGLACLMSEIGQAAPSLI---VEASPEALALADALLSCVAFPSE---DWEIADSTLQF 353
G+ + +G+ + VE LAL + + C P + + TL F
Sbjct: 304 TSHGICRIAVALGENHSRALLDQVEHWQSFLALVNXIXFCTGIPGHYPVNETTSSLTLTF 363
Query: 354 WSTLASYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFNDDGMVDLPDGL 413
W TL IL + A+ + + ++ V+ L+D LL +AQ D +
Sbjct: 364 WYTLQDDILSFE---AEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGFWSSDEKEQF 420
Query: 414 VQFRMNLVELLVDICQLLRSATFIQKVF--FGS-WGSANVPIPWKEVETKLFALNVVSEV 470
+R+++ + L + + L A + ++ G S+ P W+ E L+ ++E
Sbjct: 421 RIYRVDISDTLXYVYEXL-GAELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAET 479
Query: 471 VLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYR------SLAD----VIGSYSKWI 520
+ + S+ + G + ++ R LAD IG+ S+W+
Sbjct: 480 I-------------------DVNYSDVVPGLIGLIPRISISNVQLADTVXFTIGALSEWL 520
Query: 521 SAFQTNARPLLLFLAAGISEAVSSNACASALRKICEDASALIDEPSNLEILMWIGEALEK 580
+ +L + + S + S L+KIC + + P I+ + L K
Sbjct: 521 ADHPVXINSVLPLVLHALGNPELSVSSVSTLKKICRECKYDL-PPYAANIVAVSQDVLXK 579
Query: 581 RHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLID----GDNNHSLI 636
+ + A+ +L ++ +E+ NL + L+S + + KL + N +++
Sbjct: 580 QIHKTSQCXWLXQALGFLLSALQVEEILKNLHS-LISPYIQQLEKLAEEIPNPSNKLAIV 638
Query: 637 HNPATYTQILSSATRGLY---RMGTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFR 693
H + + ++ + G LPV P G +P+ +L+ + +++K+
Sbjct: 639 HILGLLSNLFTTLDISHHEDDHEGPELRKLPV-----PQGPNPVVVVLQQVFQLIQKVL- 692
Query: 694 SEHMENGNLSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTNFVSFQNHECYIRTASVVI 753
S+ + + + A C ++++ F +PQ+ + L + + T +V
Sbjct: 693 SKWLNDAQVVEAVCAIFEKSVKTLLDDFAPXVPQLCEXLGRXYSTIPQASALDLTRQLV- 751
Query: 754 EEFGHKDEYGP 764
F H+ + P
Sbjct: 752 HIFAHEPAHFP 762
>pdb|2X1G|F Chain F, Crystal Structure Of Importin13 - Mago-Y14 Complex
pdb|2X1G|G Chain G, Crystal Structure Of Importin13 - Mago-Y14 Complex
Length = 971
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 55/228 (24%), Positives = 107/228 (46%), Gaps = 30/228 (13%)
Query: 18 HDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNE 77
+ + S N+ ++WL + + AW+ + ++ + EV+FF A L K+
Sbjct: 17 YRSNSQNQAITHEWLTDAEASPQAWQFSWQLMQLGKSQ-----EVQFFGAITLHSKLMKH 71
Query: 78 GYYLQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRAV-EHGKPIEKLFYSL 136
+ + ++ L +L + RF+ GP +L ++C++L A I+ + E IE++ +
Sbjct: 72 WHEVPPENREELKQKILESIVRFAGGPKIVLNRLCISLGAYIVHMLGEWPGAIEEVINTF 131
Query: 137 QNLQ----SQDNGNMAVLEMLTVLPEE--VIDSQASDCNISS--AHRSQYGQELLSHTPM 188
QN + S D +LE+LT +PEE VI + + + A R Q L+ HT
Sbjct: 132 QNQRMPNVSADVQLWIMLEVLTAIPEEAQVIHTSVKRVVLRAEIAKRVQ----LVIHT-- 185
Query: 189 VVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVR------AGCFT 230
V +L Q ++ +D + + + ++C+ +W++ GC T
Sbjct: 186 VERYLKLQMNRVWDA----EAYSNMNRAVKCVGTWIKNIGYTIEGCVT 229
Score = 30.4 bits (67), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 67/333 (20%), Positives = 138/333 (41%), Gaps = 34/333 (10%)
Query: 451 PIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLA 510
P W ++E +++ V+E E + I +L+ VL+ E+L + ++ +L
Sbjct: 475 PTHWTKLEACIYSFQSVAEHFGGEEK----RQIPRLMRVLAEIPYEKLN--VKLLGTAL- 527
Query: 511 DVIGSYSKWISAFQTNARPLLLFLAAGISEAVSSNACASALRKICEDASALIDEPSNLEI 570
+ +GSY W+ P + L G++ ++S+ A L+++C D + +P +
Sbjct: 528 ETMGSYCNWLMENPAYIPPAINLLVRGLNSSMSAQA-TLGLKELCRDCQLQL-KPYADPL 585
Query: 571 LMWIGEALEKRHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGD 630
L +L + D ++ +I ++ + +E+ L ++S +E + + D
Sbjct: 586 LNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIP-KYLDIIVSPCFEELQAICQAD 644
Query: 631 NNHSLIHNPATYTQILSSATRGLYRMG---TVFSHLPVPL---PTNPAGDDPIFALLRVF 684
+ PA + R ++R+ T+FS L + T+ P+ +++
Sbjct: 645 SK-----TPA-------ARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRT 692
Query: 685 WPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTNFVSFQNHEC 744
P+ +++ +E ++ AAC A+ AI + F +L + CL SFQ C
Sbjct: 693 MPIFKRIAEM-WVEEIDVLEAACSAMKHAITNLRSSFQPMLQDL--CLFI-VASFQTRCC 748
Query: 745 --YIRTASVVIEEFGHKDEYGPLFVTTFERFSQ 775
+ + I F + PL F Q
Sbjct: 749 APTLEISKTAIVMFFKDEGCKPLMQQLLREFIQ 781
>pdb|3SKV|A Chain A, Salicylyl-Acyltransferase Ssfx3 From A Tetracycline
Biosynthetic Pathway
pdb|3SKV|B Chain B, Salicylyl-Acyltransferase Ssfx3 From A Tetracycline
Biosynthetic Pathway
Length = 385
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 45/102 (44%), Gaps = 16/102 (15%)
Query: 347 ADSTLQFWSTLASYILGLDA---SIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFND 403
A S + W LA+ GLD S A + H++ MF + L A L+ +V S+F D
Sbjct: 201 AASPSRTWLALAARAEGLDLQSLSFAADGSHLQPMFARLIRDL-PADLISLRVGTSNFMD 259
Query: 404 -DGMVDLPDGLVQFRMNLVELLVDICQLLRSATFIQKVFFGS 444
DG VD P LV F Q++R + + GS
Sbjct: 260 GDGFVDFPANLVGF-----------VQIIRERHPLTPIVLGS 290
>pdb|4EFC|A Chain A, Crystal Structure Of Adenylosuccinate Lyase From
Trypanosoma Brucei, Tb427tmp.160.5560
pdb|4EFC|B Chain B, Crystal Structure Of Adenylosuccinate Lyase From
Trypanosoma Brucei, Tb427tmp.160.5560
Length = 472
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 44/103 (42%), Gaps = 5/103 (4%)
Query: 349 STLQFWSTLASYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFNDDGMVD 408
+T +F ++ L A + N + DMF + + L R Q N D +
Sbjct: 218 TTGKFGGATGNFNAHLVAYPSVNWRAFADMFLAKYLGLK-----RQQATTQIENYDHLAA 272
Query: 409 LPDGLVQFRMNLVELLVDICQLLRSATFIQKVFFGSWGSANVP 451
L D + + L+++ D+ Q + F QKV G GS+ +P
Sbjct: 273 LCDACARLHVILIDMCRDVWQYISMGFFKQKVKEGEVGSSTMP 315
>pdb|3QBV|B Chain B, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
pdb|3QBV|D Chain D, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
Length = 351
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 647 SSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFAL 680
S+ +Y+ + + V LPT+P+GD+PIF +
Sbjct: 281 SNLQYKMYKTPIFLNEVLVKLPTDPSGDEPIFHI 314
>pdb|1KI1|B Chain B, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
pdb|1KI1|D Chain D, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
Length = 352
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 653 LYRMGTVFSHLPVPLPTNPAGDDPIFAL 680
+Y+ + + V LPT+P+GD+PIF +
Sbjct: 286 MYKTPIFLNEVLVKLPTDPSGDEPIFHI 313
>pdb|2CUN|A Chain A, Crystal Structure Of Phosphoglycerate Kinase From
Pyrococcus Horikoshii Ot3
pdb|2CUN|B Chain B, Crystal Structure Of Phosphoglycerate Kinase From
Pyrococcus Horikoshii Ot3
Length = 410
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 48/104 (46%), Gaps = 25/104 (24%)
Query: 115 LSALILRAVEHGKPIEKLF--YSLQNLQSQDNGNMAVLEMLTVLPEEVIDSQASDCN--- 169
LS L+ + VE+ IE +F Y+ + ++ +G +A+LE L EEV + +C
Sbjct: 76 LSELLDQHVEY---IEDIFGRYAREKIKELKSGEVAILENLRFSAEEVKNKPIEECEKTF 132
Query: 170 ----------------ISSAHRSQYGQELLSH-TPMVVEFLMQQ 196
++AHRSQ + PM++ FLM++
Sbjct: 133 LVKKLSKVIDYVVNDAFATAHRSQPSLVGFARIKPMIMGFLMEK 176
>pdb|2EBK|A Chain A, Solution Structure Of The Rwd Domain Of Human Rwd Domain
Containing Protein 3
Length = 128
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 539 SEAVSSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHL 583
SE ++ C + K+ E A +L+ EP E+++WI + L RH+
Sbjct: 79 SEQLTRAQCVTVKEKLLEQAESLLSEPMVHELVLWIQQNL--RHI 121
>pdb|3JZY|A Chain A, Crystal Structure Of Human Intersectin 2 C2 Domain
Length = 510
Score = 30.4 bits (67), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 647 SSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFAL 680
S+A +Y+ + + V LPT+P+ D+P+F +
Sbjct: 300 SNAQFKMYKTPIFLNEVLVKLPTDPSSDEPVFHI 333
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.133 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,543,640
Number of Sequences: 62578
Number of extensions: 925579
Number of successful extensions: 2375
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 2355
Number of HSP's gapped (non-prelim): 17
length of query: 930
length of database: 14,973,337
effective HSP length: 108
effective length of query: 822
effective length of database: 8,214,913
effective search space: 6752658486
effective search space used: 6752658486
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)