Query 002370
Match_columns 930
No_of_seqs 196 out of 1033
Neff 9.5
Searched_HMMs 46136
Date Thu Mar 28 22:30:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002370.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002370hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2022 Nuclear transport rece 100.0 3.2E-93 7E-98 781.8 73.5 869 1-924 1-928 (982)
2 KOG2081 Nuclear transport regu 100.0 8.7E-69 1.9E-73 569.3 50.4 549 26-622 2-557 (559)
3 KOG2021 Nuclear mRNA export fa 100.0 3.7E-59 8.1E-64 502.8 57.9 799 7-851 3-867 (980)
4 COG5101 CRM1 Importin beta-rel 100.0 4.1E-54 8.9E-59 454.4 64.5 848 6-914 13-958 (1053)
5 KOG2023 Nuclear transport rece 100.0 9.8E-40 2.1E-44 348.8 39.1 669 8-852 14-732 (885)
6 KOG2171 Karyopherin (importin) 100.0 1.9E-33 4.2E-38 322.1 48.3 601 7-736 4-615 (1075)
7 KOG2020 Nuclear transport rece 100.0 1.4E-30 3E-35 305.6 60.4 834 5-897 8-920 (1041)
8 KOG1241 Karyopherin (importin) 100.0 6.5E-23 1.4E-27 224.5 56.5 631 19-771 12-683 (859)
9 COG5215 KAP95 Karyopherin (imp 99.9 1.2E-17 2.5E-22 177.3 56.4 624 19-759 16-673 (858)
10 KOG1991 Nuclear transport rece 99.8 1.8E-14 3.9E-19 163.8 62.3 708 8-834 5-780 (1010)
11 KOG1992 Nuclear export recepto 99.7 2.3E-10 5E-15 127.9 59.7 722 5-852 3-793 (960)
12 PF08389 Xpo1: Exportin 1-like 99.7 9E-16 2E-20 147.7 13.4 146 104-263 1-148 (148)
13 KOG1410 Nuclear transport rece 99.7 2.5E-09 5.5E-14 116.6 63.1 800 4-856 2-941 (1082)
14 KOG2274 Predicted importin 9 [ 99.5 1.1E-08 2.4E-13 116.0 52.4 144 8-161 5-160 (1005)
15 COG5656 SXM1 Importin, protein 99.4 2.3E-06 4.9E-11 95.6 61.2 632 19-736 14-690 (970)
16 PF08767 CRM1_C: CRM1 C termin 99.0 2.6E-08 5.6E-13 107.2 22.7 175 723-914 67-244 (319)
17 KOG1993 Nuclear transport rece 98.9 0.00033 7.2E-09 79.5 55.4 169 11-197 4-181 (978)
18 PF03810 IBN_N: Importin-beta 98.7 2.2E-08 4.8E-13 83.8 6.6 67 28-98 1-76 (77)
19 KOG2171 Karyopherin (importin) 98.6 0.00021 4.6E-09 84.8 36.4 372 415-833 95-484 (1075)
20 KOG2023 Nuclear transport rece 97.9 0.075 1.6E-06 60.0 37.2 342 460-852 454-817 (885)
21 KOG0915 Uncharacterized conser 97.6 0.11 2.3E-06 64.2 31.8 174 375-571 988-1173(1702)
22 COG5215 KAP95 Karyopherin (imp 97.5 0.16 3.5E-06 56.3 28.8 86 480-572 323-414 (858)
23 KOG1824 TATA-binding protein-i 96.9 1.6 3.5E-05 51.8 53.8 207 5-251 44-308 (1233)
24 PF08506 Cse1: Cse1; InterPro 96.6 0.2 4.3E-06 55.2 19.7 199 328-551 141-370 (370)
25 COG5657 CSE1 CAS/CSE protein i 96.5 2.8 6.1E-05 49.8 36.9 113 19-138 15-134 (947)
26 KOG1991 Nuclear transport rece 95.7 6.7 0.00015 47.3 55.1 383 212-630 105-559 (1010)
27 KOG0212 Uncharacterized conser 95.6 4 8.7E-05 45.9 23.1 276 525-851 80-405 (675)
28 KOG1241 Karyopherin (importin) 95.3 7.9 0.00017 45.3 48.6 343 451-849 337-708 (859)
29 KOG1242 Protein containing ada 95.2 7.5 0.00016 44.5 26.9 218 377-630 208-427 (569)
30 PF03378 CAS_CSE1: CAS/CSE pro 95.1 3 6.5E-05 47.2 21.5 156 677-853 65-230 (435)
31 PF03378 CAS_CSE1: CAS/CSE pro 94.6 3.3 7.1E-05 46.9 20.0 246 565-853 22-273 (435)
32 PF08167 RIX1: rRNA processing 93.5 2.6 5.7E-05 40.8 14.5 112 790-921 37-152 (165)
33 PF01602 Adaptin_N: Adaptin N 93.3 21 0.00045 42.0 36.1 426 18-559 52-486 (526)
34 PRK09687 putative lyase; Provi 92.9 12 0.00027 39.7 19.8 207 9-267 25-249 (280)
35 PF08767 CRM1_C: CRM1 C termin 91.9 6 0.00013 42.9 16.2 170 211-395 42-224 (319)
36 PF10508 Proteasom_PSMB: Prote 91.9 30 0.00066 40.3 23.9 132 453-603 51-192 (503)
37 PF02985 HEAT: HEAT repeat; I 91.7 0.24 5.2E-06 32.6 3.2 29 530-558 1-31 (31)
38 PF01602 Adaptin_N: Adaptin N 89.7 48 0.001 38.9 24.5 108 481-602 113-223 (526)
39 KOG1824 TATA-binding protein-i 89.2 60 0.0013 39.4 56.6 288 57-399 16-312 (1233)
40 PF12755 Vac14_Fab1_bd: Vacuol 87.6 2.7 5.8E-05 36.4 7.4 89 457-554 3-94 (97)
41 PF12348 CLASP_N: CLASP N term 87.4 11 0.00025 38.5 13.6 138 451-603 18-163 (228)
42 KOG2274 Predicted importin 9 [ 86.8 82 0.0018 38.1 22.6 124 789-915 628-758 (1005)
43 PF12755 Vac14_Fab1_bd: Vacuol 86.4 2.2 4.8E-05 37.0 6.3 40 524-563 22-63 (97)
44 PF12460 MMS19_C: RNAPII trans 85.8 69 0.0015 36.3 30.8 58 793-853 338-395 (415)
45 KOG0166 Karyopherin (importin) 84.7 41 0.00089 38.4 16.7 270 531-852 111-393 (514)
46 COG5101 CRM1 Importin beta-rel 84.3 60 0.0013 37.5 17.3 229 679-915 188-453 (1053)
47 PF12348 CLASP_N: CLASP N term 83.7 36 0.00078 34.8 15.2 138 698-853 65-207 (228)
48 PF13513 HEAT_EZ: HEAT-like re 82.4 1.4 3.1E-05 33.5 3.1 54 454-515 1-54 (55)
49 PF13513 HEAT_EZ: HEAT-like re 81.8 3.3 7.2E-05 31.4 4.9 50 504-554 3-55 (55)
50 COG5181 HSH155 U2 snRNP splice 81.2 1.1E+02 0.0024 35.3 23.1 164 415-604 745-916 (975)
51 cd00020 ARM Armadillo/beta-cat 80.6 2.2 4.8E-05 38.3 4.3 94 452-556 19-120 (120)
52 KOG0213 Splicing factor 3b, su 80.4 1.3E+02 0.0029 35.6 32.9 132 456-605 492-628 (1172)
53 PF10508 Proteasom_PSMB: Prote 79.3 1.3E+02 0.0029 35.0 27.5 292 510-853 59-367 (503)
54 KOG1059 Vesicle coat complex A 78.0 1.6E+02 0.0034 35.0 28.3 45 518-562 170-216 (877)
55 PF08167 RIX1: rRNA processing 75.7 13 0.00027 36.0 8.0 80 45-133 30-110 (165)
56 PTZ00429 beta-adaptin; Provisi 74.6 2.2E+02 0.0047 35.0 24.4 96 452-562 232-332 (746)
57 PF14500 MMS19_N: Dos2-interac 74.1 56 0.0012 34.3 12.9 199 525-759 38-242 (262)
58 PF05918 API5: Apoptosis inhib 73.9 1.6E+02 0.0034 34.5 17.1 47 511-560 44-92 (556)
59 KOG2753 Uncharacterized conser 71.1 1.5E+02 0.0032 31.7 14.5 75 526-603 104-179 (378)
60 KOG0168 Putative ubiquitin fus 71.0 1.7E+02 0.0036 35.4 16.4 35 682-719 334-368 (1051)
61 KOG2021 Nuclear mRNA export fa 70.9 2.3E+02 0.0051 33.8 30.2 52 508-559 212-263 (980)
62 PF13646 HEAT_2: HEAT repeats; 70.8 28 0.0006 29.1 8.2 87 10-116 2-88 (88)
63 PTZ00429 beta-adaptin; Provisi 69.8 2.7E+02 0.0059 34.1 42.0 127 18-159 78-209 (746)
64 KOG2956 CLIP-associating prote 61.3 2.2E+02 0.0049 32.0 14.2 199 481-728 286-491 (516)
65 PF13646 HEAT_2: HEAT repeats; 59.1 22 0.00047 29.7 5.3 57 8-70 31-87 (88)
66 KOG1020 Sister chromatid cohes 58.0 1.3E+02 0.0029 38.7 13.2 150 178-357 806-958 (1692)
67 KOG1992 Nuclear export recepto 57.6 1.7E+02 0.0036 35.3 13.2 91 704-797 380-479 (960)
68 KOG2160 Armadillo/beta-catenin 57.0 2.1E+02 0.0045 31.1 12.9 146 450-606 93-246 (342)
69 PF02985 HEAT: HEAT repeat; I 55.7 14 0.00031 24.1 2.8 27 242-268 1-29 (31)
70 PF01603 B56: Protein phosphat 54.9 3.6E+02 0.0078 30.5 17.6 49 797-848 274-322 (409)
71 KOG4653 Uncharacterized conser 52.7 5.2E+02 0.011 31.7 18.2 178 511-726 746-929 (982)
72 PF11707 Npa1: Ribosome 60S bi 51.7 1.3E+02 0.0028 32.9 11.1 113 790-924 68-197 (330)
73 COG5240 SEC21 Vesicle coat com 48.2 4.9E+02 0.011 30.2 14.4 62 7-70 302-364 (898)
74 PF08506 Cse1: Cse1; InterPro 48.0 2.4E+02 0.0053 31.3 12.5 126 703-839 228-362 (370)
75 PLN03200 cellulose synthase-in 46.2 1E+03 0.022 33.1 57.1 227 6-275 12-268 (2102)
76 PF08064 UME: UME (NUC010) dom 45.8 1.9E+02 0.0042 25.5 9.2 74 543-622 31-104 (107)
77 KOG0168 Putative ubiquitin fus 42.6 6.7E+02 0.015 30.7 15.0 116 480-606 209-329 (1051)
78 PRK09687 putative lyase; Provi 42.0 4.5E+02 0.0098 27.9 14.7 123 431-595 155-277 (280)
79 KOG4541 Nuclear transport rece 40.9 6.3E+02 0.014 29.2 23.8 226 584-833 358-612 (748)
80 smart00802 UME Domain in UVSB 40.2 2.6E+02 0.0057 24.7 9.3 89 528-622 10-104 (107)
81 PRK13800 putative oxidoreducta 39.8 8.9E+02 0.019 30.7 18.7 204 10-266 624-834 (897)
82 PF08389 Xpo1: Exportin 1-like 38.4 32 0.00069 32.2 3.4 44 508-551 105-148 (148)
83 PF12717 Cnd1: non-SMC mitotic 38.4 76 0.0016 31.0 6.1 47 511-557 7-55 (178)
84 KOG2025 Chromosome condensatio 37.6 8E+02 0.017 29.5 18.9 134 1-139 30-175 (892)
85 KOG1059 Vesicle coat complex A 37.3 8.1E+02 0.017 29.5 33.5 216 83-358 139-364 (877)
86 KOG1943 Beta-tubulin folding c 37.0 2.3E+02 0.005 35.4 10.5 84 512-601 526-612 (1133)
87 PF12460 MMS19_C: RNAPII trans 37.0 6.6E+02 0.014 28.4 29.0 159 453-623 203-374 (415)
88 KOG2160 Armadillo/beta-catenin 36.0 3.9E+02 0.0084 29.1 11.1 106 6-123 78-199 (342)
89 KOG0166 Karyopherin (importin) 35.1 7.7E+02 0.017 28.6 16.5 233 456-733 127-374 (514)
90 KOG1240 Protein kinase contain 33.6 1.2E+03 0.025 30.2 23.2 67 211-283 438-514 (1431)
91 PRK10236 hypothetical protein; 33.4 80 0.0017 32.0 5.2 60 7-77 20-85 (237)
92 KOG1967 DNA repair/transcripti 33.2 1E+03 0.022 29.6 14.7 205 28-262 797-1018(1030)
93 PF14664 RICTOR_N: Rapamycin-i 31.5 4.6E+02 0.0099 29.2 11.4 53 212-271 84-140 (371)
94 PF10363 DUF2435: Protein of u 30.1 3.5E+02 0.0077 23.1 8.6 69 531-604 5-76 (92)
95 PLN03200 cellulose synthase-in 30.0 1.7E+03 0.037 31.0 33.6 275 22-357 418-721 (2102)
96 KOG0915 Uncharacterized conser 29.7 1.5E+03 0.032 30.1 31.7 112 431-557 952-1069(1702)
97 PF00514 Arm: Armadillo/beta-c 29.0 79 0.0017 22.0 3.3 27 530-556 13-41 (41)
98 PF10274 ParcG: Parkin co-regu 28.6 4.5E+02 0.0098 25.8 9.3 53 677-732 74-129 (183)
99 PF14911 MMS22L_C: S-phase gen 27.5 8.8E+02 0.019 26.9 22.9 93 792-891 225-322 (373)
100 PF12030 DUF3517: Domain of un 27.4 8.4E+02 0.018 26.7 12.1 52 831-893 246-297 (337)
101 PF08623 TIP120: TATA-binding 27.4 2.2E+02 0.0048 27.5 6.9 56 792-854 41-96 (169)
102 PF08064 UME: UME (NUC010) dom 26.7 3E+02 0.0065 24.3 7.3 49 686-735 55-104 (107)
103 PF13251 DUF4042: Domain of un 26.3 5E+02 0.011 25.5 9.3 85 541-629 54-156 (182)
104 KOG1240 Protein kinase contain 25.7 1.2E+03 0.026 30.0 13.9 143 84-270 570-727 (1431)
105 cd00020 ARM Armadillo/beta-cat 25.0 2.8E+02 0.006 24.1 7.2 91 18-119 17-119 (120)
106 PF09184 PPP4R2: PPP4R2; Inte 25.0 4E+02 0.0088 28.4 9.1 108 7-121 3-113 (288)
107 KOG1242 Protein containing ada 21.9 1.3E+03 0.029 27.0 29.7 172 414-605 309-488 (569)
108 cd07064 AlkD_like_1 A new stru 21.8 3.1E+02 0.0066 27.6 7.2 55 15-75 19-75 (208)
109 smart00802 UME Domain in UVSB 21.4 5E+02 0.011 23.0 7.5 49 685-734 54-103 (107)
110 KOG0212 Uncharacterized conser 21.0 1.4E+03 0.03 26.8 23.1 228 5-271 20-282 (675)
111 KOG2011 Sister chromatid cohes 20.6 1.8E+03 0.04 28.1 17.2 234 308-557 94-356 (1048)
No 1
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.2e-93 Score=781.77 Aligned_cols=869 Identities=17% Similarity=0.243 Sum_probs=679.3
Q ss_pred CCchHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhcChHHHHHHHHhhccCCCCCCccchhHHhhhHHhHHHhccCcCC
Q 002370 1 MQMDLQIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYY 80 (930)
Q Consensus 1 ~~~~~~~~v~~av~~ly~~~d~~~~~~A~~~L~~fq~s~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~ki~~~~~~ 80 (930)
|+.+.+++|+++|..||++++++.++.+++||++.|+||+||.+++.||+.++. .++|||||.||+.||+++|++
T Consensus 1 md~~~Ia~v~~~v~~lY~~~~~~~~a~~qk~Lq~aq~S~Q~w~~s~~llQ~~k~-----~evqyFGAltL~~ki~~~~e~ 75 (982)
T KOG2022|consen 1 MDSDLIATVEELVTTLYSHRNHENDAITQKWLQDAQCSQQGWHFSWQLLQPDKS-----SEVQYFGALTLHDKINTRWEE 75 (982)
T ss_pred CCchHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhHHHHHHHHHHcCCCch-----hHHHHHhHHHHHHHHHhhhcc
Confidence 776779999999999999889999999999999999999999999999998774 588999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhc--ccCchHHHHHHHhhcccC----CCchhHHHHHHHh
Q 002370 81 LQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRAV--EHGKPIEKLFYSLQNLQS----QDNGNMAVLEMLT 154 (930)
Q Consensus 81 l~~e~~~~lr~~Ll~~l~~~~~~~~~v~~kL~~~La~l~~~~~--~W~~~i~~li~~~~~~~~----~~~~~~~~L~iL~ 154 (930)
+|+++...|+.+++..+..++.||+.|.||+|.++|.+.+++. .||+++.+++..++.... ....+.++|+.|+
T Consensus 76 ~~~~~~~qL~~klf~~l~~~~g~~~lVl~kl~~sLasl~l~~~~d~Wp~ai~~vi~~l~~q~~p~v~ad~n~~~~Le~Ls 155 (982)
T KOG2022|consen 76 CPANEAVQLKLKLFLILSRFAGGPKLVLNKLCASLASLILYMVPDLWPTAIQDVIPTLQGQASPLVLADINCEILLEVLS 155 (982)
T ss_pred CChhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHccccCCchHHHHHHHHhcccCccccchhhHHHHHHHhc
Confidence 9999999999999999999999999999999999999999985 699999999999986321 1235679999999
Q ss_pred hhhcccccccccccCCCHHHHHHHHHHHHhhhhHHHHHHHHHHhhccCCCCCcchhhhHHHHHHHHHHHHHhccccccCc
Q 002370 155 VLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQ 234 (930)
Q Consensus 155 ~l~EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~c~~sWi~~~~~~~~~~ 234 (930)
.+|+|..+. + ++..+|..++.++......++.++..++....+......+-..+..+++|+.+|+++. ..+.
T Consensus 156 ~~p~e~q~~---~--l~~t~~~~l~~eLak~~~~v~~l~e~vlr~~~n~t~s~~~~i~~~~a~dCv~~Wi~~i---~~~~ 227 (982)
T KOG2022|consen 156 FMPAEFQHV---T--LPLTRRSVLRGELAKFSENVISLLEVVLRGGSNSTSSLINLIFKQAAVDCVEQWIRYI---SLTG 227 (982)
T ss_pred cCcHhhhhc---c--chhHHHHHHHHHHHHHHHHHhHHHHHHHhccccccHHHHHHHhhhHHHHHHHHHHHHh---cccc
Confidence 999999643 2 7788999999999999999999888888765422110011146788999999999965 2232
Q ss_pred chhcccchHHHHHHhcCC--C---------------CcHHHHHHHHHHHHhccC--ChhH---HHHhhhhh-hHHhhh-c
Q 002370 235 GSLAAHPLLNFVFNSLQV--Q---------------SSFDVAIEVLVELVGRHE--GLPQ---ALLCRVPF-LKELLL-L 290 (930)
Q Consensus 235 ~~i~~~~ll~~l~~~L~~--~---------------~~~~~a~~~l~ei~~~~~--~~~~---~l~~~~~~-l~~~~~-~ 290 (930)
- ....++..++..+.. . .+++..+...+..+...+ .|.+ .|++.+.+ +++.-. .
T Consensus 228 ~--~c~~i~~~ll~~l~~s~~~~~~a~~~cmt~~~n~la~~~l~~~v~~i~q~d~~~y~nti~~li~i~~~~l~e~~~~~ 305 (982)
T KOG2022|consen 228 M--DCDQITQVLLDVLGQSTEGSYEAAEKCMTIFGNVLADDTLLASVNDIIQPDCEFYRNTITLLISICLGILQEVSGKI 305 (982)
T ss_pred c--cHHHHHHHHHHHHhhhccccccchhhhcccchhhhccchHHHHHHHhcChHHHhccchHHHHHHHHHHHHHHHHHHH
Confidence 2 233455555555541 1 111111111111111111 1222 23333333 222111 0
Q ss_pred hhhccCc--HhHHhhHHHHHHHHHHhhhHHHHhc------ChhHHHHHHHHHhcccCCCCCchhh----hhcHHHHHHHH
Q 002370 291 PALTDGD--EKVIGGLACLMSEIGQAAPSLIVEA------SPEALALADALLSCVAFPSEDWEIA----DSTLQFWSTLA 358 (930)
Q Consensus 291 ~~~~~~d--~d~~~~l~~l~~~~~e~~~~~l~~~------~~~~~~ll~~ll~~~~~p~~d~~v~----~~~~~fW~~l~ 358 (930)
+..++.| +|....++++++..+|++.+.+.++ +..+.++++.|+.|+++||+ |++. ..++.|||.|+
T Consensus 306 ~~~e~~d~~~e~i~~~~~i~v~~~En~l~~lid~~~~g~~~e~v~rlv~vll~~t~~PG~-ypveE~~S~~~l~FW~tL~ 384 (982)
T KOG2022|consen 306 QEEENADASEEEIVTFLAITVSSVENHLPTLIDCAAQGEQSELVIRLVQVLLVLTNFPGQ-YPVEEIVSDRTLIFWYTLQ 384 (982)
T ss_pred HHHhCCCchhHHHHHHHHHHHHHHhcccHHHHHHHhhcchHHHHHHHHHHHHHHhCCCCC-ccHHHHHhHHHHHHHHHHH
Confidence 2344555 7788899999999999999998764 22457999999999999994 6654 57999999999
Q ss_pred HHhhccchhhhhhhhhhhhhcH-HHHHHHHHHHHHHhccCCC-CCCCCCCCCCCchHHHHHHHHHHHHHHHHHhcCchH-
Q 002370 359 SYILGLDASIAKNKKHVEDMFF-SVFSALLDALLLRAQVDES-SFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSAT- 435 (930)
Q Consensus 359 ~~l~~~~~~~~~~~~~~~~~~~-~~~~~Ll~~l~~k~~~p~~-~~~~~~~~d~~d~f~~~R~~~~d~l~~~~~~l~~~~- 435 (930)
|++..+.+++. +.....|+ |+|.+|++++++|+.+|.+ .|. .|..|++|.|++||++++|+++++|.++|+..
T Consensus 385 dei~~~~~e~~---~~~~~i~~~qIy~qlvei~l~K~~~Ps~e~~~-~W~S~s~e~F~~YR~diSD~~~~~Y~ilgd~ll 460 (982)
T KOG2022|consen 385 DEIMQTINETQ---QIKKQILSQQIYAQLVEILLKKLALPSKEIWL-SWSSDSREQFESYRKDISDLLMSSYSILGDGLL 460 (982)
T ss_pred HHHHHhhhccC---CcchhHHHHHHHHHHHHHHHHHhcCCCHHHhc-cCCcchHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 99987655432 12334454 9999999999999999988 454 69999999999999999999999999999642
Q ss_pred -HHHHHHHhhhcCCC-CCCCchhhhHHHHHHHhhhhccccCCCccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHH
Q 002370 436 -FIQKVFFGSWGSAN-VPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVI 513 (930)
Q Consensus 436 -~l~~~~~~~~~~~~-~~~~W~~~Ea~L~~l~~iae~~~~~~~~~~l~~i~~~l~~l~~~~~~~~~~~~~v~~~t~~~~i 513 (930)
++...++++..... .+.+|++.|+|+|++.++++.+...++ +.+..++...++.+.... ++.+.. |++.+|
T Consensus 461 ~~L~~~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~~t~~----~~i~rl~~~~asik~S~~--n~ql~~-Tss~~i 533 (982)
T KOG2022|consen 461 DFLIDTLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLGETES----TWIPRLFETSASIKLSAP--NPQLLS-TSSDLI 533 (982)
T ss_pred HHHHHHHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcCcchh----HHHHHHHHhccccccccC--ChhHHH-HHHHHH
Confidence 44445555544332 456799999999999999999986554 556666655543321100 011334 668999
Q ss_pred HhhHHHHHhchhchHHHHHHHHHhccccchhHHHHHHHHHHHHHhhcccCCCccHHHHHHHHHHHHhcCCChhhHHHHHH
Q 002370 514 GSYSKWISAFQTNARPLLLFLAAGISEAVSSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVG 593 (930)
Q Consensus 514 g~y~~wl~~~p~~L~~vl~~l~~~l~~p~v~~~Aa~al~~lc~~c~~~l~~p~~~~~l~~~~~~l~~~~l~~~~~~~l~e 593 (930)
|.|+.|+..||.||.+.++.++.++++++....|..++++||++|+.+|. |+..+.+..+++.+.....+..++.+++.
T Consensus 534 gs~s~~l~e~P~~ln~sl~~L~~~Lh~sk~s~q~i~tl~tlC~~C~~~L~-py~d~~~a~~~e~l~~~~~~~S~~~klm~ 612 (982)
T KOG2022|consen 534 GSLSNWLGEHPMYLNPSLPLLFQGLHNSKESEQAISTLKTLCETCPESLD-PYADQFSAVCYEVLNKSNAKDSDRLKLMK 612 (982)
T ss_pred HHHHHHHhcCCcccCchHHHHHHHhcCchHHHHHHHHHHHHHHhhhhhCc-hHHHHHHHHHHHHhcccccCchHHHHHHH
Confidence 99999999999999999999999999999888888999999999999996 44444445556666667788999999999
Q ss_pred HHHHHHccCCchHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCchhhHHHHHHhHHHHHhhhcccccccccCCCC---
Q 002370 594 AISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTN--- 670 (930)
Q Consensus 594 ai~~vi~~~p~~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~l~~i~~~l~~~~~~~--- 670 (930)
+||+|++.+.+++ +.+|+.++++|++++++.++....+. ++. .+. ..-.+.+++++|..+..+.+..
T Consensus 613 sIGyvls~~~pEe-~~kyl~~lin~il~qle~~l~~~i~~-----~e~---~l~-~~~~l~~iS~LftSL~~~~~~~d~d 682 (982)
T KOG2022|consen 613 SIGYVLSRLKPEE-IPKYLMKLINPILSQLEINLAPGIDD-----QEN---HLR-IAFQLNTISALFTSLINKKDIIDTD 682 (982)
T ss_pred HHHHHHHhccHHh-HHHHHHHHHHHHHHHHHHhhcCCCCC-----HHH---HHH-HHHHHHHHHHHHhccCCCCcccccc
Confidence 9999999998766 68999999999999999998765431 111 122 2334667778887776433211
Q ss_pred C-------CCCchHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHhhhhh-HhhHHHHHHHHHHhhhhhCCc
Q 002370 671 P-------AGDDPIFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQHF-VTLLPQVLDCLSTNFVSFQNH 742 (930)
Q Consensus 671 ~-------~~~~p~~~~~~~i~~~l~~i~~~~~~~~~~v~e~~c~~~~~~i~~l~~~~-~p~l~~l~~~l~~~~~~~~~~ 742 (930)
. -+..|++.++++++|+++.++. +|.++.+++|++|..++++++++++.+ .|++|.++.++.. |... +.
T Consensus 683 ~~~~~~~~~qq~~il~v~~k~i~~~~kv~s-~~~~~s~vve~~C~i~~~~v~~~~~sF~~p~l~~l~~Fi~r-~~~~-~~ 759 (982)
T KOG2022|consen 683 QPEQREEPFQQFPILQVLQKAIPVFEKVLS-MWLGLSDVVEASCIIMVKGVRSLLTSFPEPMLPSLCPFIVR-FLTS-CL 759 (982)
T ss_pred chhhhccccccCCHHHHHHHHHHHHHHHHH-HHhcchhHHHHHHHHHHhccccccccchhhhHHHHHHHHHH-hccc-hH
Confidence 0 0123788999999999999999 799999999999999999999998887 8999999999987 7654 66
Q ss_pred chHHHHHHHHHHHhcCCCCccchHHHHHHHHhhhHHHHHhhcCCCCCCCCchHHHHHHHHHHHHhhhhHHHHhhchhchH
Q 002370 743 ECYIRTASVVIEEFGHKDEYGPLFVTTFERFSQAASVRALNSSYICDQEPDLVEAYTNFASTFVRTSRKEVLAASGALLE 822 (930)
Q Consensus 743 ~~~L~l~~~li~~fg~~~~~~~~l~~l~~~l~~~~~~~~l~~~~~~~~~pD~~~~~f~l~~~~l~~~p~~~~~s~~~~l~ 822 (930)
..-+.+..+++..+..++.+.+.+...+..+.+.. +..+.+ ..+.++||+.+.+++++..++++.|+.+.++...+-.
T Consensus 760 a~tl~l~~~~l~~~~~~~~~~~lv~~~~~~~~q~s-l~lf~~-~~f~n~~Di~~~~~~~v~~ilkk~P~~~~~~~~~~ts 837 (982)
T KOG2022|consen 760 AVTLSLIAACLLAKSTVEQCKPLVGQDMANAFQQS-LLLFEQ-HPFSNQPDIYLQLIGFVRQILKKIPKFLEPSMLAFTS 837 (982)
T ss_pred HHHHHHHHHHHHhhhccccccccHHHHHHHHHHHH-HHHHhc-cCCCCCchHHHHHHHHHHHHHHhCcCccccchHHHHH
Confidence 66788888888888777778888888776666665 555555 3479999999999999999999999999986534444
Q ss_pred HHHHHHHHhhccCchhHHHHHHHHHHHHHhhhhhhccCCCCCCCCccHHHHHHHHHHhhhHHHHHHHHHHhcccccccch
Q 002370 823 VSFQKAAICCTAMHRGAALAAMSYLSCFLEECLASLLGYTTSIPEGSFNAMAIQVISHSGEGLVSNVVYALLGVSAMSRI 902 (930)
Q Consensus 823 ~~l~~~l~~l~~~e~~~~~a~~~fl~~li~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~lv~~ll~~~~g~~prs~~ 902 (930)
.++.+++..++.+|+..+|++++||+.|++.+++ +....+++++.+.|+.|+.++|+|+||.+|||.+
T Consensus 838 ~i~~~a~~ll~~pE~~~i~aa~qF~t~~~~~~~s------------~~~~tv~~~V~~~G~~Li~~im~~vgg~~~RS~l 905 (982)
T KOG2022|consen 838 LILICAFILLNSPEPTTIRAASQFLTALATYATS------------HDLVTVTSVVAEIGPILIYAIMRGVGGEASRSTL 905 (982)
T ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHHHhhccc------------chhHHHHHHHHhcchHHHHHHHHHhcCcCccchh
Confidence 5666999999999999999999999999987553 2357899999999999999999999999999999
Q ss_pred hhhhHHHHHHHhhcCC-CCcccc
Q 002370 903 HSGGSCFQKKRSQVCN-NPATIG 924 (930)
Q Consensus 903 ~~~~~~L~~l~~~~~~-~~~~~~ 924 (930)
|.++|+|++|+++|+. --+|+-
T Consensus 906 d~~aDIL~al~~k~~se~r~wl~ 928 (982)
T KOG2022|consen 906 DALADILLALNAKFFSETRTWLK 928 (982)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHH
Confidence 9999999999999976 444443
No 2
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.7e-69 Score=569.27 Aligned_cols=549 Identities=25% Similarity=0.391 Sum_probs=480.8
Q ss_pred HHHHHHHHHhhcChHHHHHHHHhhccCCCCCCccchhHHhhhHHhHHHhccCcCCCChHHHHHHHHHHHHHHHHhcCCCH
Q 002370 26 VAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKDALLNALLVAAKRFSSGPP 105 (930)
Q Consensus 26 ~~A~~~L~~fq~s~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~ki~~~~~~l~~e~~~~lr~~Ll~~l~~~~~~~~ 105 (930)
.+|++||.+||+|+++|++|.++|+.. .+.+..+|||||+++||+++|+++|+....++|++|+.+++.....+.
T Consensus 2 ~~A~~~L~~FQ~S~~aW~i~~eiL~~~-----~~~~~~~FaaqTlr~Ki~~~F~~Lp~~~~~slrdsl~thl~~l~~~~~ 76 (559)
T KOG2081|consen 2 EKANNWLGNFQKSNDAWQICEEILSQK-----CDVEALLFAAQTLRNKIQYDFSELPPLTHASLRDSLITHLKELHDHPD 76 (559)
T ss_pred chHhHHHHHhCCChHHHHHHHHHHccc-----chHHHHHHHHHHHHHHHHhhHHhcCcchhHHHHHHHHHHHHHHHhCCc
Confidence 479999999999999999999999875 358999999999999999999999999999999999999998877777
Q ss_pred HHHHHHHHHHHHHHHHhcccCchHHHHHHHhhcccCCCchhHHHHHHHhhhhcccccccccccCCCHHHHHHHHHHHHhh
Q 002370 106 QLLTQICLALSALILRAVEHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDSQASDCNISSAHRSQYGQELLSH 185 (930)
Q Consensus 106 ~v~~kL~~~La~l~~~~~~W~~~i~~li~~~~~~~~~~~~~~~~L~iL~~l~EE~~~~~~~~~~l~~~~r~~~~~~l~~~ 185 (930)
.+++||+.++|++++++.+|.|++.++++..++. +...+.+|++|+++|||+.+.+. +....||+++++++...
T Consensus 77 ~i~tQL~vavA~Lal~~~~W~n~I~e~v~~~~~~---~~~~~~lLeiL~VlPEE~~~~~~---~~~a~Rr~e~~~~l~~~ 150 (559)
T KOG2081|consen 77 VIRTQLAVAVAALALHMPEWVNPIFELVRALSNK---HPAVPILLEILKVLPEETRDIRL---TVGANRRHEFIDELAAQ 150 (559)
T ss_pred hHHHHHHHHHHHHHHHhHhhcchHHHHHHHhhcC---CccHHHHHHHHHhCcHhhcchhh---hhhhhhHHHHHHHHHHh
Confidence 9999999999999999999999999999999873 33478999999999999976543 26788999999999999
Q ss_pred hhHHHHHHHHHHhhccCCCCCcchhhhHHHHHHHHHHHHHhccccccCcchhccc-chHHHHHHhcCCCCcHHHHHHHHH
Q 002370 186 TPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAH-PLLNFVFNSLQVQSSFDVAIEVLV 264 (930)
Q Consensus 186 ~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~c~~sWi~~~~~~~~~~~~i~~~-~ll~~l~~~L~~~~~~~~a~~~l~ 264 (930)
.+.++.++..+++..+. ++.+...++++|+.||.+++ .++.+.+... +++.++|..++++.+.+.|++|++
T Consensus 151 ~~~~L~~l~~lLe~~~l-----~~~~~l~~Vl~~l~SWl~~~---~~~~d~v~a~~pLi~l~F~sl~~~~lhe~At~cic 222 (559)
T KOG2081|consen 151 VSKVLVFLSDLLERSDL-----KSSDDLEQVLRCLGSWLRLH---VFPPDQVLASFPLITLAFRSLSDDELHEEATECIC 222 (559)
T ss_pred HHHHHHHHHHHHhhcCC-----ChhhHHHHHHHHHhhhhhhc---cCCHHHHHhhhHHHHHHHHHcccchhhHHHHHHHH
Confidence 99999999999998653 23568899999999999987 6788887555 999999999999999999999999
Q ss_pred HHHhccCC------hhHHHHhhhhhhHHhhhchhhccCcHhHHhhHHHHHHHHHHhhhHHHHhcChhHHHHHHHHHhccc
Q 002370 265 ELVGRHEG------LPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMSEIGQAAPSLIVEASPEALALADALLSCVA 338 (930)
Q Consensus 265 ei~~~~~~------~~~~l~~~~~~l~~~~~~~~~~~~d~d~~~~l~~l~~~~~e~~~~~l~~~~~~~~~ll~~ll~~~~ 338 (930)
.+++...+ +...++....-+...+. .+...+|.|...++||+|+++||++...+..++++++.+++.+|.+++
T Consensus 223 ~ll~~~~~~~~~~~~~~~l~~~v~~L~~~~~-~a~~~~d~d~~~a~~RIFtel~eaf~~~i~~np~~~l~~vellLl~~~ 301 (559)
T KOG2081|consen 223 ALLYCSLDRSEGLPLAAILFIGVIILETAFH-LAMAGEDLDKNEAICRIFTELGEAFVVLISTNPEEFLRIVELLLLVAG 301 (559)
T ss_pred HHHHHhhhhhccCchhHHHhccccccchHHH-HhhcccCHHHHHHHHHHHHHHHHHHHHHHhhCCCcchhHHHHHHHhcc
Confidence 99886431 44444433333333333 467789999999999999999999999999999899999999999999
Q ss_pred CCCCCchhhhhcHHHHHHHHHHhhccchhhhhhhhhhhhhcHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCchHHHHHH
Q 002370 339 FPSEDWEIADSTLQFWSTLASYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRM 418 (930)
Q Consensus 339 ~p~~d~~v~~~~~~fW~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Ll~~l~~k~~~p~~~~~~~~~~d~~d~f~~~R~ 418 (930)
|+ |++|.+.+|.|||.+.+.++..+++ .....|+|+|.+++..+.++++||++. ++..|+.++|.+||.
T Consensus 302 h~--~~evie~SF~fW~~lse~l~~~~~~------~~~~~frpy~~rLvs~l~~h~qlp~~~---~~l~Ee~~~f~~fR~ 370 (559)
T KOG2081|consen 302 HN--DTEVIEASFNFWYSLSEELTLTDDD------EALGIFRPYFLRLVSLLKRHVQLPPDQ---FDLPEEESEFFEFRL 370 (559)
T ss_pred CC--chhhhhhhHHhhhhhHHHHhccccH------HHHHHhHHHHHHHHHHHHHHccCCCcc---ccCccchhHHHHHHH
Confidence 98 8999999999999999988754432 456789999999999999999999964 344578899999999
Q ss_pred HHHHHHHHHHHhcCchHHHHHHHHhhhcCCCCCCCchhhhHHHHHHHhhhhccccCCCccchhHHHHHHHHhccCchhhh
Q 002370 419 NLVELLVDICQLLRSATFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEEL 498 (930)
Q Consensus 419 ~~~d~l~~~~~~l~~~~~l~~~~~~~~~~~~~~~~W~~~Ea~L~~l~~iae~~~~~~~~~~l~~i~~~l~~l~~~~~~~~ 498 (930)
.++|++.|+..++|.+.++.+++..+.. ++.+|+..||+||.+++++..++.+++ ..+|.+++.+.++|...+
T Consensus 371 ~v~dvl~Dv~~iigs~e~lk~~~~~l~e---~~~~We~~EAaLF~l~~~~~~~~~~e~-~i~pevl~~i~nlp~Q~~--- 443 (559)
T KOG2081|consen 371 KVGDVLKDVAFIIGSDECLKQMYIRLKE---NNASWEEVEAALFILRAVAKNVSPEEN-TIMPEVLKLICNLPEQAP--- 443 (559)
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHcc---CCCchHHHHHHHHHHHHHhccCCcccc-chHHHHHHHHhCCccchh---
Confidence 9999999999999999999999988755 457899999999999999999987776 347888888888887655
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHhchhchHHHHHHHHHhccccchhHHHHHHHHHHHHHhhcccCCCccHHHHHHHHHHH
Q 002370 499 KGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGISEAVSSNACASALRKICEDASALIDEPSNLEILMWIGEAL 578 (930)
Q Consensus 499 ~~~~~v~~~t~~~~ig~y~~wl~~~p~~L~~vl~~l~~~l~~p~v~~~Aa~al~~lc~~c~~~l~~p~~~~~l~~~~~~l 578 (930)
+|++++ .++|+|++|++.||+++.+++++++.++...+++++|+.+++++|..|+.++. .+.+.+..+...+
T Consensus 444 -----~~~ts~-ll~g~~~ew~~~~p~~le~v~~~~~~~~~~~~~as~~a~~~~~i~~~c~~~~~--~l~~~~~~l~~~l 515 (559)
T KOG2081|consen 444 -----LRYTSI-LLLGEYSEWVEQHPELLEPVLRYIRQGLQLKRLASAAALAFHRICSACRVQMT--CLIPSLLELIRSL 515 (559)
T ss_pred -----HHHHHH-HHHHHHHHHHHhCcHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhh--hhhHHHHHHHHHH
Confidence 678774 89999999999999999999999999999878999999999999999999885 4899999988888
Q ss_pred HhcCCChhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHH
Q 002370 579 EKRHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEA 622 (930)
Q Consensus 579 ~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~~l~~ll~p~~~~ 622 (930)
.....+.+... +.+|++.+++.+|.++ .+..++.++.|.+..
T Consensus 516 ~~~~~~~e~a~-l~~~~s~i~~~lp~~k-~~~~~~el~~~~l~~ 557 (559)
T KOG2081|consen 516 DSTQINEEAAC-LLQGISLIISNLPAHK-AKIALEELCEPQLRN 557 (559)
T ss_pred HHHhccHHHHH-HHHHHHHHHhcCCHhh-hhHHHHHHhhHHHhc
Confidence 77777777777 9999999999999988 578899999887654
No 3
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.7e-59 Score=502.78 Aligned_cols=799 Identities=15% Similarity=0.131 Sum_probs=580.1
Q ss_pred HHHHHHHHHhccC-CChHHHHHHHHHHHHhhcChHHHHHHHHhhccCCCCCCccchhHHhhhHHhHHHhccCcCCCChHH
Q 002370 7 IKVAQAVHVLNHD-TESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAA 85 (930)
Q Consensus 7 ~~v~~av~~ly~~-~d~~~~~~A~~~L~~fq~s~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~ki~~~~~~l~~e~ 85 (930)
++++|||.+...+ .|+..|+||-+|+++++.||.||++|.+++... +.++.+|||+.|||..+++..+++.+...
T Consensus 3 ddiEqav~a~ndp~vdsa~KqqA~~y~~qiKsSp~aw~Icie~l~~~----ts~d~vkf~clqtL~e~vrekyne~nl~e 78 (980)
T KOG2021|consen 3 DDIEQAVNAVNDPRVDSATKQQAIEYLNQIKSSPNAWEICIELLINE----TSNDLVKFYCLQTLIELVREKYNEANLNE 78 (980)
T ss_pred hHHHHHHHhhCCCcccHHHHHHHHHHHHhhcCCccHHHHHHHHHHhh----cccchhhhhhHHHHHHHHHHhhccCCHHH
Confidence 4899999998875 789999999999999999999999999999875 35789999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHh--c----CCCHHHHHHHHHHHHHHHHHhc--ccCchHHHHHHHhhcccCCCchhHHHHHHHhhhh
Q 002370 86 KDALLNALLVAAKRF--S----SGPPQLLTQICLALSALILRAV--EHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLP 157 (930)
Q Consensus 86 ~~~lr~~Ll~~l~~~--~----~~~~~v~~kL~~~La~l~~~~~--~W~~~i~~li~~~~~~~~~~~~~~~~L~iL~~l~ 157 (930)
++.+|.+++.|+... . .+|.+++||++..|+.+++..+ .|++|+.|++..+.-++ ...+...++++|-.+.
T Consensus 79 lqlvR~sv~swlk~qvl~ne~~~~p~fi~Nk~aqvlttLf~~eYp~~WnsfF~dlmsv~~~~s-~~~~~dfflkvllaId 157 (980)
T KOG2021|consen 79 LQLVRFSVTSWLKFQVLGNEQTKLPDFIMNKIAQVLTTLFMLEYPDCWNSFFDDLMSVFQVDS-AISGLDFFLKVLLAID 157 (980)
T ss_pred HHHHHHHHHHHHHHHHhCcccCCCChHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhccc-chhhHHHHHHHHHHhh
Confidence 999999999999642 2 2588999999999999999876 69999999999997632 2335789999999999
Q ss_pred cccccccccccCCCHHHHHHHHHHHHh-hhhHHHHHHHHHHhhccCCCCCcchhhhHHHHHHHHHHHHHhccccccCcch
Q 002370 158 EEVIDSQASDCNISSAHRSQYGQELLS-HTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGS 236 (930)
Q Consensus 158 EE~~~~~~~~~~l~~~~r~~~~~~l~~-~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~c~~sWi~~~~~~~~~~~~ 236 (930)
.|+.|...+++.-...+-+.+++.+++ +++++...+-+++....+. .++.+...+|+|+++|+. ||+.+.
T Consensus 158 sEiad~dv~rT~eei~knnliKDaMR~ndip~lv~~wyqil~~y~n~----~npgl~~~cLdc~g~fVS-----WIdInL 228 (980)
T KOG2021|consen 158 SEIADQDVIRTKEEILKNNLIKDAMRDNDIPKLVNVWYQILKLYENI----VNPGLINSCLDCIGSFVS-----WIDINL 228 (980)
T ss_pred hHhhhccccCChHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHhcc----CCchHHHHHHHHHHHHhh-----hhhhhh
Confidence 999988777632111233356667776 6789988888887765321 145688899999999999 889999
Q ss_pred hcccchHHHHHHhcCCCCcHHHHHHHHHHHHhccCChh-HH-HHhhhhh-hHHhhhchhhccCcHhHHhhHHHHHHHHHH
Q 002370 237 LAAHPLLNFVFNSLQVQSSFDVAIEVLVELVGRHEGLP-QA-LLCRVPF-LKELLLLPALTDGDEKVIGGLACLMSEIGQ 313 (930)
Q Consensus 237 i~~~~ll~~l~~~L~~~~~~~~a~~~l~ei~~~~~~~~-~~-l~~~~~~-l~~~~~~~~~~~~d~d~~~~l~~l~~~~~e 313 (930)
+++.++++++++++..++++.+|++|+.+++++.|+-. +. ++..+.. +.-.+..++.+.+|.|+...++++++.+|.
T Consensus 229 IaNd~f~nLLy~fl~ieelR~aac~cilaiVsKkMkP~dKL~lln~L~q~l~lfg~~s~dq~~d~df~e~vskLitg~gv 308 (980)
T KOG2021|consen 229 IANDYFLNLLYKFLNIEELRIAACNCILAIVSKKMKPMDKLALLNMLNQTLELFGYHSADQMDDLDFWESVSKLITGFGV 308 (980)
T ss_pred hhchhHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhhccccccCchHHHHHHHHHhhcce
Confidence 99999999999999999999999999999999998632 32 2222211 111122245667899999999999999998
Q ss_pred hhhHHHHh----cC--------hhHHHHHHHHHhcccCCCCCchhhhhcHHHHHHHHHHhhccchhhhhhhhhhhhhcHH
Q 002370 314 AAPSLIVE----AS--------PEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAKNKKHVEDMFFS 381 (930)
Q Consensus 314 ~~~~~l~~----~~--------~~~~~ll~~ll~~~~~p~~d~~v~~~~~~fW~~l~~~l~~~~~~~~~~~~~~~~~~~~ 381 (930)
+......+ .+ ......+.++++...+. ++++...+++||+.....+-.+. ...+..+.
T Consensus 309 el~~i~s~lnseld~~~kqn~l~~ll~~vpyllq~l~~e--~ddit~~ifpFlsdyl~~LKkl~--------~ls~~qk~ 378 (980)
T KOG2021|consen 309 ELTIIISQLNSELDTLYKQNVLSILLEIVPYLLQFLNNE--FDDITAKIFPFLSDYLAFLKKLK--------ALSSPQKV 378 (980)
T ss_pred eeehhHhhhhhccCHHHHHHHHHHHHHHHHHHHHHhccc--chhhHHHHHHHHHHHHHHHhhcc--------cccchhhc
Confidence 76555432 11 13457899999999995 67788999999998665543221 23344556
Q ss_pred HHHHHHHHHHHHhccCCCC-CCCC-CCCCCCchHHHHHHHHHHHHHHHHHhcCchHHHHHHHHh---hhcCCCCCCCchh
Q 002370 382 VFSALLDALLLRAQVDESS-FNDD-GMVDLPDGLVQFRMNLVELLVDICQLLRSATFIQKVFFG---SWGSANVPIPWKE 456 (930)
Q Consensus 382 ~~~~Ll~~l~~k~~~p~~~-~~~~-~~~d~~d~f~~~R~~~~d~l~~~~~~l~~~~~l~~~~~~---~~~~~~~~~~W~~ 456 (930)
.+.+++.++++|+.|++.- +.++ .++||++.|.++|+++. .+++....+.++.++..+-+. ...+. ...+|+.
T Consensus 379 ~l~~illai~kqicydemy~nddn~tg~EeEa~f~e~RkkLk-~fqdti~~idpsl~l~~Ir~slS~al~ns-~e~swqe 456 (980)
T KOG2021|consen 379 PLHKILLAIFKQICYDEMYFNDDNVTGDEEEAFFEEVRKKLK-NFQDTIVVIDPSLFLNNIRQSLSAALMNS-KEESWQE 456 (980)
T ss_pred cHHHHHHHHHHHHhccHHhhcccCCCCchHHHHHHHHHHHHH-HHHHHHHhcCHHHHHHHHHHHHHHHHhcC-CcchHHH
Confidence 6888999999999998773 2222 23367788999999997 777777777776544433332 22221 3467999
Q ss_pred hhHHHHHHHhhhhccccCC------Cccc---hhHHHHHHH--HhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHhchh
Q 002370 457 VETKLFALNVVSEVVLQEG------QAFD---FSVIMQLVA--VLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQT 525 (930)
Q Consensus 457 ~Ea~L~~l~~iae~~~~~~------~~~~---l~~i~~~l~--~l~~~~~~~~~~~~~v~~~t~~~~ig~y~~wl~~~p~ 525 (930)
+|+++|.++.+||+.+.+. +... +..+..++. .++.|+|... .+.+ |++|.||..||...++
T Consensus 457 vE~Aiylly~lgE~l~~~~~~~nsgd~s~~~vl~~~~~ll~tsqv~~h~h~lV----qLlf---mE~ivRY~kff~~esq 529 (980)
T KOG2021|consen 457 VELAIYLLYNLGECLKNNYFGLNSGDISTSQVLFLNELLLMTSQVLAHDHELV----QLLF---MELIVRYNKFFSTESQ 529 (980)
T ss_pred HHHHHHHHHHHhhccccccccccCccccHHHHHHHHHHHHHHcccccCCchHH----HHHH---HHHHHHHHHHHhcchh
Confidence 9999999999999987431 1110 112333322 3577887542 2445 8999999999999999
Q ss_pred chHHHHHHHH--Hhccccc--hhHHHHHHHHHHHHHhhcccCCCccHHHHHHHHHHHH------h----cCCChhhHHHH
Q 002370 526 NARPLLLFLA--AGISEAV--SSNACASALRKICEDASALIDEPSNLEILMWIGEALE------K----RHLPLEDEEEV 591 (930)
Q Consensus 526 ~L~~vl~~l~--~~l~~p~--v~~~Aa~al~~lc~~c~~~l~~p~~~~~l~~~~~~l~------~----~~l~~~~~~~l 591 (930)
++|.++++++ +|++|.+ |+.+|++.|.++.+.-++.+. |+..+++..+...+. + .....++++.+
T Consensus 530 ~ip~vL~aFld~rglhn~ne~Vr~RawYLF~RfVKlLkkqlv-pfie~iln~iqdlL~~~vtt~N~~s~~lt~fddqlyI 608 (980)
T KOG2021|consen 530 KIPLVLNAFLDSRGLHNKNENVRLRAWYLFTRFVKLLKKQLV-PFIEEILNKIQDLLHIKVTTINAQSDNLTIFDDQLYI 608 (980)
T ss_pred hhHHHHHHHccchhccccccccchHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHcCcCCCcCcccccccccccccee
Confidence 9999999998 7888754 999999999999999999887 556667777777662 1 23357899999
Q ss_pred HHHHHHHHcc--CCchHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCchhhHHHHHHhHHHHHhhhcccccccccCCC
Q 002370 592 VGAISLILGS--VSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPT 669 (930)
Q Consensus 592 ~eai~~vi~~--~p~~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~l~~i~~~l~~~~~~ 669 (930)
+|+||.+|.. .|.++ ++.++..+++|++.+..-.+..+.-.+....|+.. ..+...+-.+++.-+++.... .
T Consensus 609 fEtiGviI~l~n~paE~-qaay~~~litpl~~~~~igl~~a~lasde~~pv~I----a~c~~~lmaig~lakgf~~rl-v 682 (980)
T KOG2021|consen 609 FETIGVIITLNNSPAEL-QAAYANTLITPLILDQIIGLLFAQLASDEASPVVI----AECHHILMAIGTLAKGFHIRL-V 682 (980)
T ss_pred eecceEEEeCCCCCHHH-HHHHHhcccChHHHHHHHHHHHHHHhccccccHHH----HHHHHHHHHHHHHhhcccccC-c
Confidence 9999999854 77766 68999999999998866544433211111223222 222233333344445544322 1
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhhhhhCCcchHHHHH
Q 002370 670 NPAGDDPIFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTNFVSFQNHECYIRTA 749 (930)
Q Consensus 670 ~~~~~~p~~~~~~~i~~~l~~i~~~~~~~~~~v~e~~c~~~~~~i~~l~~~~~p~l~~l~~~l~~~~~~~~~~~~~L~l~ 749 (930)
+ ..+..+..++.++..++..++. .++....++.+++..++|++.++|+.+.|++|.+++.++.+-... ....||.++
T Consensus 683 t-~~qvg~~~vf~~~ldvil~~ls-~f~k~E~iRsavrft~hRmI~~lg~~vlPfipklie~lL~s~d~k-Emvdfl~fl 759 (980)
T KOG2021|consen 683 T-ENQVGNMVVFSNILDVILVTLS-FFNKFENIRSAVRFTFHRMIPILGNKVLPFIPKLIELLLSSTDLK-EMVDFLGFL 759 (980)
T ss_pred c-hhcccHHHHHHHHHHHHHHHHh-hccccchhHHHHHHHHHHHHHhcchhhhcchHHHHHHHHhcCCHH-HHHHHHHHH
Confidence 1 1122366778888888888887 588889999999999999999999999999999999999876554 678899999
Q ss_pred HHHHHHhcCCCCccchHHHHHHHHhhhHHHHHhhcCCCCC------CCCchHHHHHHHHHHHHhhhhHHHHhhch--hch
Q 002370 750 SVVIEEFGHKDEYGPLFVTTFERFSQAASVRALNSSYICD------QEPDLVEAYTNFASTFVRTSRKEVLAASG--ALL 821 (930)
Q Consensus 750 ~~li~~fg~~~~~~~~l~~l~~~l~~~~~~~~l~~~~~~~------~~pD~~~~~f~l~~~~l~~~p~~~~~s~~--~~l 821 (930)
++++++|+++ +.+.+.+++-.+.... +.-+...+.+. +.-++..+|++|+..++.+--..++.+.. ..+
T Consensus 760 sQLihkfk~~--~~~ilnqmlppll~rI-fsvi~r~a~p~dt~aa~ek~~lrksy~~fLqtftn~g~~silat~~n~~~~ 836 (980)
T KOG2021|consen 760 SQLIHKFKTD--CYQILNQMLPPLLNRI-FSVIERIAKPIDTAAAAEKILLRKSYCTFLQTFTNNGVTSILATDINRAIL 836 (980)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHH-HHHhcccCCCCChhHHHHHHHHHHHHHHHHHHHhcCCcceeeeccchhhhh
Confidence 9999999964 5667777777666655 44444222222 22345668999999999875544443321 233
Q ss_pred HHHHHHHH-HhhccCchhHHHHHHHHHHHHH
Q 002370 822 EVSFQKAA-ICCTAMHRGAALAAMSYLSCFL 851 (930)
Q Consensus 822 ~~~l~~~l-~~l~~~e~~~~~a~~~fl~~li 851 (930)
+.++...+ .+-...++-..++.......+.
T Consensus 837 ~~iln~l~~~a~~y~dpmmQksln~lcnk~v 867 (980)
T KOG2021|consen 837 PVILNDLVTYAPQYIDPMMQKSLNVLCNKIV 867 (980)
T ss_pred hHHHHHhhhccccccCHHHHHHHHHHHHHHH
Confidence 33333333 1222345544444433333333
No 4
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=100.00 E-value=4.1e-54 Score=454.39 Aligned_cols=848 Identities=13% Similarity=0.143 Sum_probs=579.5
Q ss_pred HHHHHHHHHHhccCCChHHHHHHHHHHHHhhcChHHHHHHHHhhccCCCCCCccchhHHhhhHHhHHHhccCcCCCChHH
Q 002370 6 QIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAA 85 (930)
Q Consensus 6 ~~~v~~av~~ly~~~d~~~~~~A~~~L~~fq~s~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~ki~~~~~~l~~e~ 85 (930)
.+-+.+.|.++|. ++...++||++.|.+||..|+||+-++++|+..+ .++.+|.|.++|..-|.+.|.-+|+++
T Consensus 13 iallDkVVttfyq-g~g~~q~qAq~iLtkFq~~PdaWtkad~IL~~S~-----~pqskyiALs~LdklIttkWkllp~~~ 86 (1053)
T COG5101 13 IALLDKVVTTFYQ-GDGRKQEQAQRILTKFQELPDAWTKADYILNNSK-----LPQSKYIALSLLDKLITTKWKLLPEGM 86 (1053)
T ss_pred HHHHHHHHHHhcC-CCchhHHHHHHHHHHHHhCchHHHHHHHHHhccc-----CcchhhhHHHHHHHHHHhhhhhCCcHH
Confidence 3567889999994 5667899999999999999999999999998754 469999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCC------CHHHHHHHHHHHHHHHHHhc--ccCchHHHHHHHhhcccCCCchhHHHHHHHhhhh
Q 002370 86 KDALLNALLVAAKRFSSG------PPQLLTQICLALSALILRAV--EHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLP 157 (930)
Q Consensus 86 ~~~lr~~Ll~~l~~~~~~------~~~v~~kL~~~La~l~~~~~--~W~~~i~~li~~~~~~~~~~~~~~~~L~iL~~l~ 157 (930)
+.+||+.+++.+..-+.+ .+.+.+|+-.+|..++.+.+ .||+|+++++...+. +-+.++..+.+|+.|.
T Consensus 87 r~GiRnyvv~~vI~~s~dd~v~~~qk~~lnkldltLvqIlKqeWP~nWP~FIpeli~~S~~---s~~vCeNnmivLklLs 163 (1053)
T COG5101 87 RQGIRNYVVQLVIEKSQDDKVRDKQKYVLNKLDLTLVQILKQEWPRNWPTFIPELINVSQI---SMEVCENNMIVLKLLS 163 (1053)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhHHHHHHHHhcccccchhhHHHHhhccc---hHHHHhccHHHHHHhH
Confidence 999999999998765532 36899999999999999986 699999999987764 5567889999999999
Q ss_pred cccccccccccCCCHHHHHHHHHHHHhhhhHHHHHHHHHHhhccCCCCCcchhhhHHHHHHHHHHHHHhccccccCcchh
Q 002370 158 EEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSL 237 (930)
Q Consensus 158 EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~c~~sWi~~~~~~~~~~~~i 237 (930)
||+.++..-. ++..+...++..|....+.+++++.+++++..+ +++..+.|+.+..++. |+|.+.+
T Consensus 164 EEvFdfSaeq--mTq~k~~~LkNqm~~EF~qIF~lc~qiLE~~~~-------~SLi~ATLesllrfl~-----wiPl~yI 229 (1053)
T COG5101 164 EEVFDFSAEQ--MTQVKKRLLKNQMKIEFPQIFGLCKQILEYSRD-------ESLIEATLESLLRFLE-----WIPLDYI 229 (1053)
T ss_pred HHHHhccHHH--HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCC-------hHHHHHHHHHHHHHHh-----hCchhHH
Confidence 9999875432 555566677888888899999999999998643 4566666555554444 4555677
Q ss_pred cccchHHHHHHhc-CCCCcHHHHHHHHHHHHhccC-C----hhHH---HHhhhh-------------hhHHhhhchhhcc
Q 002370 238 AAHPLLNFVFNSL-QVQSSFDVAIEVLVELVGRHE-G----LPQA---LLCRVP-------------FLKELLLLPALTD 295 (930)
Q Consensus 238 ~~~~ll~~l~~~L-~~~~~~~~a~~~l~ei~~~~~-~----~~~~---l~~~~~-------------~l~~~~~~~~~~~ 295 (930)
..+.++.++.+.+ +.|+.+.++++|+.|+.+.++ + ..+. +.-++. .+.+.|. ....
T Consensus 230 feTnIieLv~~~f~s~pd~r~~tl~CLtEi~~L~~~pq~n~~~~r~~v~~fq~i~~~~~~s~~p~~~d~~e~Y~--~~~~ 307 (1053)
T COG5101 230 FETNIIELVLEHFNSMPDTRVATLSCLTEIVDLGRHPQENAEKERILVIHFQCIEFLKMYSNKPQEEDIYEVYG--GMDK 307 (1053)
T ss_pred HHHHHHHHHHHHhccCCchhHHHHHHHHHHHhhccCcccchhhhhHHHHHHHHHHHHHHHhccchHHHHHHHHc--ccCh
Confidence 7888999888554 568999999999999998663 1 1111 111110 1111111 1223
Q ss_pred CcHhHHhhHHHHHHHHHHhhhHHHHhcC-h-hHHHHHHHHHhcccCCCCCchhhhhcHHHHHHHHHHhhcc----ch---
Q 002370 296 GDEKVIGGLACLMSEIGQAAPSLIVEAS-P-EALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGL----DA--- 366 (930)
Q Consensus 296 ~d~d~~~~l~~l~~~~~e~~~~~l~~~~-~-~~~~ll~~ll~~~~~p~~d~~v~~~~~~fW~~l~~~l~~~----~~--- 366 (930)
.|.++..+++.+++++.+.|..++.... . ..+....+|++++... +.++...++++|..|.-++++- +.
T Consensus 308 neq~Fvq~LA~fL~s~~~~~~~lLE~~e~~e~llnah~YLiqiSrIn--ereiFkt~leyW~klVadLy~E~q~lp~tem 385 (1053)
T COG5101 308 NEQIFVQKLAQFLSSLYEVYISLLEAREMAENLLNAHGYLIQISRIN--EREIFKTALEYWNKLVADLYSEFQRLPATEM 385 (1053)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhhhcc--HHHHHHHHHHHHHHHHHHHHHHHHhCccccc
Confidence 4567889999999999999999987532 2 3356688899998885 7889999999999987776531 10
Q ss_pred -----------------hhhhhhhhhhhhcHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCchHHHH---------HHHH
Q 002370 367 -----------------SIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFNDDGMVDLPDGLVQF---------RMNL 420 (930)
Q Consensus 367 -----------------~~~~~~~~~~~~~~~~~~~Ll~~l~~k~~~p~~~~~~~~~~d~~d~f~~~---------R~~~ 420 (930)
...+..+-+...|..++++|.-+++.+|..|++.+--+. |+.+-.++| -+.+
T Consensus 386 ~Pli~ls~~s~~istnpn~~~~~pLrkhiY~~ilsqLrlvlienMvrPEEVliVen--degEivRefvketDtI~lYksm 463 (1053)
T COG5101 386 SPLIQLSVGSQAISTNPNQDSTKPLRKHIYIGILSQLRLVLIENMVRPEEVLIVEN--DEGEIVREFVKETDTIELYKSM 463 (1053)
T ss_pred CcchhccccchhccCCcchhcccchHHHHHHHHHHHHHHHHHHcCCCcceEEEEEC--CCcHHHHHHhccccHhHHHHHH
Confidence 011122335567899999999999999999998432111 222323322 2456
Q ss_pred HHHHHHHHHhcCch--HHHHHHHHhhhcCCCCCCCchhhhHHHHHHHhhhhccccCCCccchhHHHHHHHHhccCchhhh
Q 002370 421 VELLVDICQLLRSA--TFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEEL 498 (930)
Q Consensus 421 ~d~l~~~~~~l~~~--~~l~~~~~~~~~~~~~~~~W~~~Ea~L~~l~~iae~~~~~~~~~~l~~i~~~l~~l~~~~~~~~ 498 (930)
++++.+..++.-.+ .++.-.+... -.+..|+|+.+...+||+|+|++.+++++..-.+..+++-+..+......
T Consensus 464 RevLvyLthL~v~Dte~~mi~Klarq--~dg~EWsw~nlNtLcWAIGSISGamsE~~EkrF~VnviKdLL~LcemKrg-- 539 (1053)
T COG5101 464 REVLVYLTHLIVDDTEKYMIGKLARQ--LDGKEWSWNNLNTLCWAIGSISGAMSEVNEKRFFVNVIKDLLALCEMKRG-- 539 (1053)
T ss_pred hhHHHHHhhhhhhhHHHHHHHHHHHH--hcCCccchhhHhHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHHhhc--
Confidence 67888887764433 1222111111 13357999999999999999999998654321123344444445433221
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHhchhchHHHHHHHHHhccc--cchhHHHHHHHHHHHHHhhcccCCCc---cHHHHHH
Q 002370 499 KGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGISE--AVSSNACASALRKICEDASALIDEPS---NLEILMW 573 (930)
Q Consensus 499 ~~~~~v~~~t~~~~ig~y~~wl~~~p~~L~~vl~~l~~~l~~--p~v~~~Aa~al~~lc~~c~~~l~~p~---~~~~l~~ 573 (930)
++.++|+.+.+|+++|+|.+|++.|+.||.+++..+++.++. ..++.+||.+|.++.++|+.+++.-+ ..+.+..
T Consensus 540 KdnKAVvASnIMyvvGQYpRFLkahw~FLkTVv~KLFEFMhE~HEGvqDMACDtFiKIvqKC~~hFv~Qq~gesEpFI~~ 619 (1053)
T COG5101 540 KDNKAVVASNIMYVVGQYPRFLKAHWSFLKTVVKKLFEFMHEDHEGVQDMACDTFIKIVQKCPVHFVTQQEGESEPFIVY 619 (1053)
T ss_pred CCcchhhecceeeeeccchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhHHHHHHHHHhCcHHHhhcCCCCCCcHHHH
Confidence 233578888999999999999999999999999999999984 56999999999999999998875311 3567888
Q ss_pred HHHHHH--hcCCChhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCC-CchhhHHHHHHh-
Q 002370 574 IGEALE--KRHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIH-NPATYTQILSSA- 649 (930)
Q Consensus 574 ~~~~l~--~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~-~~~~~~~~l~~~- 649 (930)
++..+. .+++.+.....+|||+|.+|+..|........+..+++-....|.++..++..+..+. ++.. ...++..
T Consensus 620 Iirnl~ktT~dL~pqQ~htfYeAcg~vIse~p~~~~~~rlv~dlm~Lpn~aw~niv~qa~~n~~~L~d~~t-vki~an~~ 698 (1053)
T COG5101 620 IIRNLPKTTGDLEPQQKHTFYEACGMVISEVPKTRDYKRLVLDLMDLPNSAWLNIVIQADENINRLSDTMT-VKIDANKM 698 (1053)
T ss_pred HHHhhhhhcccCChHHHhHHHHHHhHHHhccchhhHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhcchhH-HHHHHHHH
Confidence 888875 4788999999999999999999999877777777888877788888877654221111 1110 0000000
Q ss_pred HHHHHhhhcccccccccCCCCCCCCchHHHHHHHHHH------HHHHHHHh------h---hccchHHHHHHHHHHHHHH
Q 002370 650 TRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFWP------MLEKLFRS------E---HMENGNLSTAACRALSLAI 714 (930)
Q Consensus 650 ~~~l~~l~~i~~~l~~~~~~~~~~~~p~~~~~~~i~~------~l~~i~~~------~---~~~~~~v~e~~c~~~~~~i 714 (930)
...+....++...+- ++.+-....++.+ .+...+.. + +.+--.|-..+..++..-+
T Consensus 699 ktnVa~ctslg~~fy---------Pq~~~~y~~ml~ly~avs~~Is~~vaaeg~iatktp~vrglrtiKkEIlkLv~tyI 769 (1053)
T COG5101 699 KTNVAKCTSLGYRFY---------PQTCSSYCIMLFLYFAVSFDISNSVAAEGLIATKTPAVRGLRTIKKEILKLVATYI 769 (1053)
T ss_pred HHHHHHHhhcccccc---------hHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCccccchHHHHHHHHHHHHHHH
Confidence 000000011111111 1112222222211 11111110 0 0000011122223332222
Q ss_pred HHhh---hhhHhhHHHHHHHHHHhhhhhCC---cchHHHHHHHHHHHhcCCC-CccchHHHHHHHHhhhHHHHHhhcCCC
Q 002370 715 QSSG---QHFVTLLPQVLDCLSTNFVSFQN---HECYIRTASVVIEEFGHKD-EYGPLFVTTFERFSQAASVRALNSSYI 787 (930)
Q Consensus 715 ~~l~---~~~~p~l~~l~~~l~~~~~~~~~---~~~~L~l~~~li~~fg~~~-~~~~~l~~l~~~l~~~~~~~~l~~~~~ 787 (930)
...+ .--..+++++++.++.+|....| .+.+|.+.+.+|...|+.- .-++.+. .....++ +.++. .+
T Consensus 770 ska~dl~~V~n~lv~~l~eaVl~DY~nNvPdardaevLnl~ttiV~~v~~~i~~~~~l~l---~svf~ct-l~mi~--kd 843 (1053)
T COG5101 770 SKARDLKFVQNDLVNMLCEAVLFDYKNNVPDARDAEVLNLGTTIVRNVESVIYLQRELFL---ISVFICT-LIMIV--KD 843 (1053)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHHHHHhhhhhHHHH---HHHHhhh-HHHHH--hh
Confidence 2111 11235788999999999986533 5779999999999887531 1112111 1222333 34443 47
Q ss_pred CCCCCchHHHHHHHHHHHHhhhhHHHHhhchhchHHHHHHHHHhhccCchhHHHHHHHHHHHHHhhhhhhccCCCCCCCC
Q 002370 788 CDQEPDLVEAYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICCTAMHRGAALAAMSYLSCFLEECLASLLGYTTSIPE 867 (930)
Q Consensus 788 ~~~~pD~~~~~f~l~~~~l~~~p~~~~~s~~~~l~~~l~~~l~~l~~~e~~~~~a~~~fl~~li~~~~~~~~~~~~~~~~ 867 (930)
++++|+...+||.|+..+..++...|+.-+.+.+..+.+..++++++..|++...+++.+..++..+.. ...
T Consensus 844 f~EypEhr~~f~~Ll~~inl~sF~afl~~p~p~Fklv~nti~wsfkhi~RDv~~~gLnill~l~kn~~~-----mg~--- 915 (1053)
T COG5101 844 FDEYPEHRKNFLLLLENINLFSFSAFLSFPQPSFKLVYNTILWSFKHINRDVSDLGLNILLILFKNCHE-----MGV--- 915 (1053)
T ss_pred hhhChHHHHHHHHHHHHHHHHhHHHHHcCCcHHHHHHHHHHHHHHHhccchHhhhhhHHHHHHHHHHHH-----hCC---
Confidence 899999999999999999999999999887788999999999999999999999999999999987764 121
Q ss_pred ccHHHHHHHHHHhhhHHHHHHHHHHhcccccccchhhhhHHHHHHHh
Q 002370 868 GSFNAMAIQVISHSGEGLVSNVVYALLGVSAMSRIHSGGSCFQKKRS 914 (930)
Q Consensus 868 ~~~~~~~~~~l~~~G~~lv~~ll~~~~g~~prs~~~~~~~~L~~l~~ 914 (930)
+.+.++..++--..++.++.-+...--+|..+.=+=+|..|.+
T Consensus 916 ----~~~n~F~~~yy~s~l~~il~vltDsDhKsgF~~Q~Llla~li~ 958 (1053)
T COG5101 916 ----PFINQFYAQYYMSTLENILGVLTDSDHKSGFDQQCLLLAFLIR 958 (1053)
T ss_pred ----chHHHHHHHHHHHHHHHHHeeeeccchhccchHHHHHHHHHHH
Confidence 2244444444444555555444433444444444444444443
No 5
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.8e-40 Score=348.77 Aligned_cols=669 Identities=15% Similarity=0.146 Sum_probs=457.8
Q ss_pred HHHHHHHHhccCCChHHHHHHHHHHHHhhcChHHHHHHHHhhccCCCCCCccchhHHhhhHHhHHHhccCcCCCChHHHH
Q 002370 8 KVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKD 87 (930)
Q Consensus 8 ~v~~av~~ly~~~d~~~~~~A~~~L~~fq~s~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~ki~~~~~~l~~e~~~ 87 (930)
|+.+.++.- .+||++.|+.++.-|.+|+.-|+--++...+|...+ +.+..+|--|..+|++.++.+|++.+.+...
T Consensus 14 ql~~lLk~s-~Spn~~~~~~~~~~leq~~~~pdfnnYL~~IL~~~~---~~d~~~Rs~aGLlLKNnvr~~~~~~~~~~~~ 89 (885)
T KOG2023|consen 14 QLAQLLKNS-QSPNSETRNNVQEKLEQFNLFPDFNNYLIYILIRAK---SEDVPTRSLAGLLLKNNVRGHYNSIPSEVLD 89 (885)
T ss_pred HHHHHHHhc-cCCChHHHHHHHHHHHHHhcccchhceeeEEEeccc---ccchhHHHHhhhhHhccccccccCCChHHHH
Confidence 344444332 268899999999999999999999999999998866 5678999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhc--ccCchHHHHHHHhhcccCCCchhHHHHHHHhhhhcccccccc
Q 002370 88 ALLNALLVAAKRFSSGPPQLLTQICLALSALILRAV--EHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDSQA 165 (930)
Q Consensus 88 ~lr~~Ll~~l~~~~~~~~~v~~kL~~~La~l~~~~~--~W~~~i~~li~~~~~~~~~~~~~~~~L~iL~~l~EE~~~~~~ 165 (930)
++|..++..+. ..++.||+..+..++.++-... .||+.++.+.+.+.+. +.+.++..+.-|+.+.|+... .
T Consensus 90 yiKs~~l~~lg---d~~~lIr~tvGivITTI~s~~~~~~wpelLp~L~~~L~s~--d~n~~EgA~~AL~KIcEDsa~--~ 162 (885)
T KOG2023|consen 90 YIKSECLHGLG---DASPLIRATVGIVITTIASTGGLQHWPELLPQLCELLDSP--DYNTCEGAFGALQKICEDSAQ--F 162 (885)
T ss_pred HHHHHHHhhcc---CchHHHHhhhhheeeeeecccccccchhHHHHHHHHhcCC--cccccchhHHHHHHHHhhhHH--H
Confidence 99999998775 3457899999999999887764 7999999999999864 345677788888888887542 1
Q ss_pred cccCCCHHHHHHHHHHHHhhhhHHHHHHHHHHhhccCCCCCcchhhhHHHHHHHHHHHHHhccccccCcchhcccchHHH
Q 002370 166 SDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNF 245 (930)
Q Consensus 166 ~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~c~~sWi~~~~~~~~~~~~i~~~~ll~~ 245 (930)
.++.. ..+=+.-..|..+++.. + ++++++..++.|++.+|-.. + ..++
T Consensus 163 lds~~-------~~rpl~~mipkfl~f~~----h--------~spkiRs~A~~cvNq~i~~~-----~------qal~-- 210 (885)
T KOG2023|consen 163 LDSDV-------LTRPLNIMIPKFLQFFK----H--------PSPKIRSHAVGCVNQFIIIQ-----T------QALY-- 210 (885)
T ss_pred Hhhhc-------ccCchHHhHHHHHHHHh----C--------CChhHHHHHHhhhhheeecC-----c------HHHH--
Confidence 11000 01112234556566553 2 34579999999999988742 1 1111
Q ss_pred HHHhcCCCCcHHHHHHHHHHHHhccCChhHHHHhhhhhhHHhhhchhhccCcHhHHhhHHHHHHHHHHhhhHHHHhcChh
Q 002370 246 VFNSLQVQSSFDVAIEVLVELVGRHEGLPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMSEIGQAAPSLIVEASPE 325 (930)
Q Consensus 246 l~~~L~~~~~~~~a~~~l~ei~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~d~d~~~~l~~l~~~~~e~~~~~l~~~~~~ 325 (930)
..+|.+. +.++. ...++|+++.+++|+-|+-+.|.++..++. +
T Consensus 211 ------------~~iD~Fl---------------------e~lFa-lanD~~~eVRk~vC~alv~Llevr~dkl~p---h 253 (885)
T KOG2023|consen 211 ------------VHIDKFL---------------------EILFA-LANDEDPEVRKNVCRALVFLLEVRPDKLVP---H 253 (885)
T ss_pred ------------HHHHHHH---------------------HHHHH-HccCCCHHHHHHHHHHHHHHHHhcHHhccc---c
Confidence 1111111 11121 226778899999999999999999888874 4
Q ss_pred HHHHHHHHHhcccCCCCCchhhhhcHHHHHHHHHHhhccchhhhhhhhhhhhhcHHHHHHHHHHHHHHhccCCCCC---C
Q 002370 326 ALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSF---N 402 (930)
Q Consensus 326 ~~~ll~~ll~~~~~p~~d~~v~~~~~~fW~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Ll~~l~~k~~~p~~~~---~ 402 (930)
...++++||+.+..+ |++|+-.++|||..+++.- -......|++.+++++++.+|.|.+++. .
T Consensus 254 l~~IveyML~~tqd~--dE~VALEACEFwla~aeqp------------i~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~ 319 (885)
T KOG2023|consen 254 LDNIVEYMLQRTQDV--DENVALEACEFWLALAEQP------------ICKEVLQPYLDKLIPVLLSGMVYSDDDIILLK 319 (885)
T ss_pred hHHHHHHHHHHccCc--chhHHHHHHHHHHHHhcCc------------CcHHHHHHHHHHHHHHHHccCccccccHHHhc
Confidence 467999999999887 7889999999999998742 2346789999999999999999965421 0
Q ss_pred -CCC---------------------------------C--CCCCchHHH--HHHHHHHHHHHHHHhcCchHHHHHHHHhh
Q 002370 403 -DDG---------------------------------M--VDLPDGLVQ--FRMNLVELLVDICQLLRSATFIQKVFFGS 444 (930)
Q Consensus 403 -~~~---------------------------------~--~d~~d~f~~--~R~~~~d~l~~~~~~l~~~~~l~~~~~~~ 444 (930)
+++ | .|++|.|.+ .|+--+-.+.-..++.|.+ ++..++--+
T Consensus 320 ~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~e-lL~~l~PlL 398 (885)
T KOG2023|consen 320 NNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDE-LLPILLPLL 398 (885)
T ss_pred CccccccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhHHH-HHHHHHHHH
Confidence 000 0 011222333 3444443443344555644 455444333
Q ss_pred hcCCCCCCCchhhhHHHHHHHhhhhccccCCCccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHhch
Q 002370 445 WGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQ 524 (930)
Q Consensus 445 ~~~~~~~~~W~~~Ea~L~~l~~iae~~~~~~~~~~l~~i~~~l~~l~~~~~~~~~~~~~v~~~t~~~~ig~y~~wl~~~p 524 (930)
... ..+..|...||+++++|+|||++-.... .++|.+..++..+.++..+ .||..| ||+++||+.|+...+
T Consensus 399 k~~-L~~~~W~vrEagvLAlGAIAEGcM~g~~-p~LpeLip~l~~~L~DKkp------lVRsIT-CWTLsRys~wv~~~~ 469 (885)
T KOG2023|consen 399 KEH-LSSEEWKVREAGVLALGAIAEGCMQGFV-PHLPELIPFLLSLLDDKKP------LVRSIT-CWTLSRYSKWVVQDS 469 (885)
T ss_pred HHH-cCcchhhhhhhhHHHHHHHHHHHhhhcc-cchHHHHHHHHHHhccCcc------ceeeee-eeeHhhhhhhHhcCC
Confidence 221 1246799999999999999999976544 3478888877776655442 267777 699999999988643
Q ss_pred --hchHHHHHHHHHhccc--cchhHHHHHHHHHHHHHhhcccCCCccHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHc
Q 002370 525 --TNARPLLLFLAAGISE--AVSSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILG 600 (930)
Q Consensus 525 --~~L~~vl~~l~~~l~~--p~v~~~Aa~al~~lc~~c~~~l~~p~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~vi~ 600 (930)
+|+.++|.-+++.+-+ ..||.+||.||..+-++....|+ |+...+|.++...+..++ .+....+|.|||.++.
T Consensus 470 ~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLV-p~l~~IL~~l~~af~kYQ--~KNLlILYDAIgtlAd 546 (885)
T KOG2023|consen 470 RDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELV-PYLEYILDQLVFAFGKYQ--KKNLLILYDAIGTLAD 546 (885)
T ss_pred hHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhH-HHHHHHHHHHHHHHHHHh--hcceehHHHHHHHHHH
Confidence 6999999999988875 55999999999999999888887 555567777777776553 4557889999999998
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCchhhHHHHHHhHHHHHhhhcccccccccCCCCCCCCch-HHH
Q 002370 601 SVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDP-IFA 679 (930)
Q Consensus 601 ~~p~~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~l~~i~~~l~~~~~~~~~~~~p-~~~ 679 (930)
.+...-.+..|++.++.|++++|+.+-+.++ +. .-.++|++++.+.+..++ -| +-+
T Consensus 547 svg~~Ln~~~YiqiLmPPLi~KW~~lsd~DK--------dL--------fPLLEClSsia~AL~~gF-------~P~~~~ 603 (885)
T KOG2023|consen 547 SVGHALNKPAYIQILMPPLIEKWELLSDSDK--------DL--------FPLLECLSSIASALGVGF-------LPYAQP 603 (885)
T ss_pred HHHHhcCcHHHHHHhccHHHHHHHhcCcccc--------hH--------HHHHHHHHHHHHHHhccc-------cccCHH
Confidence 7765544678999999999999999876542 22 234677766666555432 12 223
Q ss_pred HHHHHHHHHHHHHHh--hhccchHHHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhhhhhCCcchHHHHHHHHHHHhc
Q 002370 680 LLRVFWPMLEKLFRS--EHMENGNLSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTNFVSFQNHECYIRTASVVIEEFG 757 (930)
Q Consensus 680 ~~~~i~~~l~~i~~~--~~~~~~~v~e~~c~~~~~~i~~l~~~~~p~l~~l~~~l~~~~~~~~~~~~~L~l~~~li~~fg 757 (930)
++++++.++...++. +..++ | + ...+.+ ...-+-|++++.++...|
T Consensus 604 Vy~Rc~~il~~t~q~~~~~~~~-----------------------~---~-----~~~pdk-dfiI~sLDL~SGLaegLg 651 (885)
T KOG2023|consen 604 VYQRCFRILQKTLQLLAKVQQD-----------------------P---T-----VEAPDK-DFIIVSLDLLSGLAEGLG 651 (885)
T ss_pred HHHHHHHHHHHHHHHHHhccCC-----------------------c---c-----ccCCCc-ceEEEeHHHHhHHHHHhh
Confidence 444444444433321 00011 0 0 011222 145667999999999998
Q ss_pred CCCCccchHHHHHHHHhhhHHHHHhhcCCCCCCCCchHHHHHHHHHHHHhhhhHHHHhhchhchHHHHHHHHHhhccCch
Q 002370 758 HKDEYGPLFVTTFERFSQAASVRALNSSYICDQEPDLVEAYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICCTAMHR 837 (930)
Q Consensus 758 ~~~~~~~~l~~l~~~l~~~~~~~~l~~~~~~~~~pD~~~~~f~l~~~~l~~~p~~~~~s~~~~l~~~l~~~l~~l~~~e~ 837 (930)
+.- ..++. +.. +..+.-.+..+.-||++++.|.|++.+.+.|+..+.+. +..++......+.....
T Consensus 652 ~~i------e~Lva---~sn-l~~lll~C~~D~~peVRQS~FALLGDltk~c~~~v~p~----~~~fl~~lg~Nl~~~~i 717 (885)
T KOG2023|consen 652 SHI------EPLVA---QSN-LLDLLLQCLQDEVPEVRQSAFALLGDLTKACFEHVIPN----LADFLPILGANLNPENI 717 (885)
T ss_pred hch------HHHhh---hcc-HHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHhccch----HHHHHHHHhhcCChhhc
Confidence 752 12111 111 11111112336779999999999999999999998864 44444444445555555
Q ss_pred hHHHHHHHHHHHHHh
Q 002370 838 GAALAAMSYLSCFLE 852 (930)
Q Consensus 838 ~~~~a~~~fl~~li~ 852 (930)
.++..|+--+.++--
T Consensus 718 sv~nNA~WAiGeia~ 732 (885)
T KOG2023|consen 718 SVCNNAIWAIGEIAL 732 (885)
T ss_pred hHHHHHHHHHHHHHH
Confidence 666666655555443
No 6
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.9e-33 Score=322.15 Aligned_cols=601 Identities=17% Similarity=0.183 Sum_probs=432.2
Q ss_pred HHHHHHHHHhccCCChHHHHHHHHHHHHhhcChHHHHHHHHhhccCCCCCCccchhHHhhhHHhHHHhccCcCCCChHHH
Q 002370 7 IKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAK 86 (930)
Q Consensus 7 ~~v~~av~~ly~~~d~~~~~~A~~~L~~fq~s~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~ki~~~~~~l~~e~~ 86 (930)
..+.+.+..|. +||++.|++|++-|+..-+++..-.....++.+ +.++++|.+||..+|+.+.+.|..+++|.+
T Consensus 4 ~~l~qLl~~l~-spDn~vr~~Ae~~l~~~~~~~~~l~~L~~i~~~-----~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~~ 77 (1075)
T KOG2171|consen 4 APLEQLLQQLL-SPDNEVRRQAEEALETLAKTEPLLPALAHILAT-----SADPQVRQLAAVLLRKLLTKHWSRLSAEVQ 77 (1075)
T ss_pred hHHHHHHHHhc-CCCchHHHHHHHHHHHhhcccchHHHHHHHHhc-----CCChHHHHHHHHHHHHHHHHHhhcCCHHHH
Confidence 47899999987 678889999999999665555566666667765 346799999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhc--ccCchHHHHHHHhhcccCCCchhHHHHHHHhhhhccccccc
Q 002370 87 DALLNALLVAAKRFSSGPPQLLTQICLALSALILRAV--EHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDSQ 164 (930)
Q Consensus 87 ~~lr~~Ll~~l~~~~~~~~~v~~kL~~~La~l~~~~~--~W~~~i~~li~~~~~~~~~~~~~~~~L~iL~~l~EE~~~~~ 164 (930)
+.||.+|+..+.+ +..+.||+|+|.++|.++.... .||+.++.++++.++. ++..++..+.+|+.+|+-+++.
T Consensus 78 ~siks~lL~~~~~--E~~~~vr~k~~dviAeia~~~l~e~WPell~~L~q~~~S~--~~~~rE~al~il~s~~~~~~~~- 152 (1075)
T KOG2171|consen 78 QSIKSSLLEIIQS--ETEPSVRHKLADVIAEIARNDLPEKWPELLQFLFQSTKSP--NPSLRESALLILSSLPETFGNT- 152 (1075)
T ss_pred HHHHHHHHHHHHh--ccchHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhcCC--CcchhHHHHHHHHhhhhhhccc-
Confidence 9999999999987 5568899999999999998865 5999999999999874 6678899999999999988632
Q ss_pred ccccCCCHHHHHHHHHHHHhhhhHHHHHHHHHHhhccCCCCCcchhhhHHHHHHHHHHHHHhccccccCcchhcccchHH
Q 002370 165 ASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLN 244 (930)
Q Consensus 165 ~~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~c~~sWi~~~~~~~~~~~~i~~~~ll~ 244 (930)
+..+...+..++.+++...+ ..++..+++++.+++.+. +...+. .
T Consensus 153 -----------------~~~~~~~l~~lf~q~~~d~s--------~~vr~~a~rA~~a~~~~~---~~~~~~------~- 197 (1075)
T KOG2171|consen 153 -----------------LQPHLDDLLRLFSQTMTDPS--------SPVRVAAVRALGAFAEYL---ENNKSE------V- 197 (1075)
T ss_pred -----------------cchhHHHHHHHHHHhccCCc--------chHHHHHHHHHHHHHHHh---ccchHH------H-
Confidence 12234567777877776542 238999999999999863 100110 0
Q ss_pred HHHHhcCCCCcHHHHHHHHHHHHhccCChhHHHHhhhhhhHHhhhchhhccCcHhHHhhHHHHHHHHHHhhhHHHHhcCh
Q 002370 245 FVFNSLQVQSSFDVAIEVLVELVGRHEGLPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMSEIGQAAPSLIVEASP 324 (930)
Q Consensus 245 ~l~~~L~~~~~~~~a~~~l~ei~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~d~d~~~~l~~l~~~~~e~~~~~l~~~~~ 324 (930)
+....++|.++...+ ..++.+|.|........|.++.++.++++..
T Consensus 198 ---------------------------~~~~~llP~~l~vl~----~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~--- 243 (1075)
T KOG2171|consen 198 ---------------------------DKFRDLLPSLLNVLQ----EVIQDGDDDAAKSALEALIELLESEPKLLRP--- 243 (1075)
T ss_pred ---------------------------HHHHHHhHHHHHHhH----hhhhccchHHHHHHHHHHHHHHhhchHHHHH---
Confidence 112345677666433 2456777788888899999999999988864
Q ss_pred hHHHHHHHHHhcccCCCCCchhhhhcHHHHHHHHHHhhccchhhhhhhhhhhhhcHHHHHHHHHHHHHHhcc-CC-CCCC
Q 002370 325 EALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQV-DE-SSFN 402 (930)
Q Consensus 325 ~~~~ll~~ll~~~~~p~~d~~v~~~~~~fW~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Ll~~l~~k~~~-p~-~~~~ 402 (930)
.+..++++.+.+.+...-|.++...+++|-..+.++- +.......++..+|+..++..|.= .. ++|.
T Consensus 244 ~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~A-----------p~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~ 312 (1075)
T KOG2171|consen 244 HLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYA-----------PAMCKKLALLGHTLVPVLLAMMTEEEDDDEWS 312 (1075)
T ss_pred HHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhh-----------HHHhhhchhhhccHHHHHHHhcCCcccchhhc
Confidence 5568899999998887556778899999998888762 234445566667777777665541 11 1333
Q ss_pred CCCCCCCCchHHHHHHHHHHHHHH-HHHhcCchHHHHHHHHhhhcCCCCCCCchhhhHHHHHHHhhhhccccCCCccchh
Q 002370 403 DDGMVDLPDGLVQFRMNLVELLVD-ICQLLRSATFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFS 481 (930)
Q Consensus 403 ~~~~~d~~d~f~~~R~~~~d~l~~-~~~~l~~~~~l~~~~~~~~~~~~~~~~W~~~Ea~L~~l~~iae~~~~~~~~~~l~ 481 (930)
++++ .|+|+ .+--..++.-..| ...-+|+..++..+++.+.. ...+.+|....|+|.++++++|++.+.... .++
T Consensus 313 ~~d~-~ded~-~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~-~l~S~~w~~R~AaL~Als~i~EGc~~~m~~-~l~ 388 (1075)
T KOG2171|consen 313 NEDD-LDEDD-EETPYRAAEQALDRLALHLGGKQVLPPLFEALEA-MLQSTEWKERHAALLALSVIAEGCSDVMIG-NLP 388 (1075)
T ss_pred cccc-ccccc-ccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHHcccHHHHHH-HHH
Confidence 2121 22233 2222333433334 34448888777777766432 124678999999999999999999864432 378
Q ss_pred HHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHH-----hchhchHHHHHHHHHhccccchhHHHHHHHHHHHH
Q 002370 482 VIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWIS-----AFQTNARPLLLFLAAGISEAVSSNACASALRKICE 556 (930)
Q Consensus 482 ~i~~~l~~l~~~~~~~~~~~~~v~~~t~~~~ig~y~~wl~-----~~p~~L~~vl~~l~~~l~~p~v~~~Aa~al~~lc~ 556 (930)
.|++++....++||++ ||+++ |..||+++.=|. .|++++++.|-+....-.+++|+.+||.|+.++.+
T Consensus 389 ~Il~~Vl~~l~Dphpr------Vr~AA-~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E 461 (1075)
T KOG2171|consen 389 KILPIVLNGLNDPHPR------VRYAA-LNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSE 461 (1075)
T ss_pred HHHHHHHhhcCCCCHH------HHHHH-HHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHH
Confidence 8999888888888866 78866 699999998554 46677887777777777788999999999999999
Q ss_pred HhhcccCCCccHHHHHH-HHHHHHhcCCChhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHHHHhhhhccCCCCC
Q 002370 557 DASALIDEPSNLEILMW-IGEALEKRHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSL 635 (930)
Q Consensus 557 ~c~~~l~~p~~~~~l~~-~~~~l~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~ 635 (930)
+|.+....| +++.|++ ....+.. .-+...++.++.+||+|+.+... ...+|..++ +.-|.+++.++.+++.
T Consensus 462 ~~~~~~l~p-YLd~lm~~~l~~L~~-~~~~~v~e~vvtaIasvA~AA~~--~F~pY~d~~----Mp~L~~~L~n~~~~d~ 533 (1075)
T KOG2171|consen 462 ECDKSILEP-YLDGLMEKKLLLLLQ-SSKPYVQEQAVTAIASVADAAQE--KFIPYFDRL----MPLLKNFLQNADDKDL 533 (1075)
T ss_pred hCcHHHHHH-HHHHHHHHHHHHHhc-CCchhHHHHHHHHHHHHHHHHhh--hhHhHHHHH----HHHHHHHHhCCCchhh
Confidence 999987765 7777666 4444432 23688899999999999876432 234555555 4556666665543222
Q ss_pred CCCchhhHHHHHHhHHHHHhhhcccccccccCCCCCCCCchHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHH
Q 002370 636 IHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQ 715 (930)
Q Consensus 636 ~~~~~~~~~~l~~~~~~l~~l~~i~~~l~~~~~~~~~~~~p~~~~~~~i~~~l~~i~~~~~~~~~~v~e~~c~~~~~~i~ 715 (930)
+. |+ ...++|++.+...+. +.++.+.-++++.++......--..|....+-....+.++-+
T Consensus 534 r~--------Lr--gktmEcisli~~AVG---------ke~F~~~a~eliqll~~~~~~~~~~dd~~~sy~~~~warmc~ 594 (1075)
T KOG2171|consen 534 RE--------LR--GKTMECLSLIARAVG---------KEKFLPLAEELIQLLLELQGSDQDDDDPLRSYMIAFWARMCR 594 (1075)
T ss_pred HH--------HH--hhHHHHHHHHHHHhh---------hhhhhHhHHHHHHHHHhhcccchhhccccHHHHHHHHHHHHH
Confidence 11 11 234677776655443 234555666666666665432123455677788888888999
Q ss_pred HhhhhhHhhHHHHHHHHHHhh
Q 002370 716 SSGQHFVTLLPQVLDCLSTNF 736 (930)
Q Consensus 716 ~l~~~~~p~l~~l~~~l~~~~ 736 (930)
.+|+++.|++|.++..+...-
T Consensus 595 ilg~~F~p~L~~Vmppl~~ta 615 (1075)
T KOG2171|consen 595 ILGDDFAPFLPVVMPPLLKTA 615 (1075)
T ss_pred HhchhhHhHHHHHhHHHHHhh
Confidence 999999999999888877543
No 7
>KOG2020 consensus Nuclear transport receptor CRM1/MSN5 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.4e-30 Score=305.63 Aligned_cols=834 Identities=15% Similarity=0.123 Sum_probs=509.0
Q ss_pred HHHHHHHHHHHhccC-CChHHHHHHHHHHHHhhcChHHHHHHHHhhccCCCCCCccchhHHhhhHHhHHHhccCcCCCCh
Q 002370 5 LQIKVAQAVHVLNHD-TESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQS 83 (930)
Q Consensus 5 ~~~~v~~av~~ly~~-~d~~~~~~A~~~L~~fq~s~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~ki~~~~~~l~~ 83 (930)
...++..|+.+-+.+ ++.+.|.+|++.|.+||..+++|..|..+|+.. .+.+++|||.+.|.+.|+++|+.+|.
T Consensus 8 l~~~lldavv~~~~~~~s~~~r~eA~~~l~~lke~~~~~~~~~~iL~~s-----~~~~~k~f~Lqlle~vik~~W~~~~~ 82 (1041)
T KOG2020|consen 8 LDSELLDAVVVTLNPEGSNEERGEAQQILEELKEEPDSWLQVYLILKLS-----TNPILKYFALQLLENVIKFRWNSLPV 82 (1041)
T ss_pred HHHHHHHhHHHHhCcccchHHHHHHHHHHHHHHhCcchHHHHHHHHhcc-----CCchhheeeHHHHHHHHHHhcccCCc
Confidence 455677777764444 788999999999999999999999999999875 45799999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcC------CCHHHHHHHHHHHHHHHHHhc--ccCchHHHHHHHhhcccCCCchhHHHHHHHhh
Q 002370 84 AAKDALLNALLVAAKRFSS------GPPQLLTQICLALSALILRAV--EHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTV 155 (930)
Q Consensus 84 e~~~~lr~~Ll~~l~~~~~------~~~~v~~kL~~~La~l~~~~~--~W~~~i~~li~~~~~~~~~~~~~~~~L~iL~~ 155 (930)
+.+.++|+.++..+...+. ..+.+++||+..+..++++.+ .||++++++.+.... +...++..+.+++.
T Consensus 83 ~~r~glk~~v~~~~~~~~~~~~~~~~~~~~~~kL~~i~Vqi~K~eWp~~wp~~i~dl~~~s~~---s~~~~el~m~Il~l 159 (1041)
T KOG2020|consen 83 EERVGLKNYVLTLIIEASPDEDVSETEKHLLNKLNLILVQIVKREWPAIWPTFIPDLAQSSKT---SETVCELSMIILLL 159 (1041)
T ss_pred cccHHHHHHHHHHHhhcCCcHhHHHHHHHHHHHHhHHHHHHHHHHHHhhcchhhhhHHHHhhc---CcccchHHHHHHHH
Confidence 9999999999998876442 146899999999999999986 699999999999886 45678899999999
Q ss_pred hhcccccccccccCCCHHHHHHHH-HHHHhhhhHHHHHHHHHHhhccCCCCCcchhhhHHHHHHHHHHHHHhccccccCc
Q 002370 156 LPEEVIDSQASDCNISSAHRSQYG-QELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQ 234 (930)
Q Consensus 156 l~EE~~~~~~~~~~l~~~~r~~~~-~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~c~~sWi~~~~~~~~~~ 234 (930)
|.||+.+.+... ++ .+|..+. ..+......+..++..+..+.. .. +..+++..+..++. |+|.
T Consensus 160 LsEdvf~~ss~~--~~-q~~~~il~~~~~~~f~~i~~l~~~~~~~a~-------~~-~~~atl~tl~~fl~-----wip~ 223 (1041)
T KOG2020|consen 160 LSEEVFDFSSSE--LT-QQKIIILKNLLENEFQQIFTLCSYIKEKAN-------SE-LLSATLETLLRFLE-----WIPL 223 (1041)
T ss_pred HHHHHhcccchH--HH-hhhHHHHHHHhhHHHHHHHHHHHHHHhhhh-------hH-HHHHHHHHHHHHhh-----cccH
Confidence 999999775422 22 2333333 3333356677777766544431 22 45555444444333 3444
Q ss_pred chhcccchHHHHH-HhcCCCCcHHHHHHHHHHHHhccCC--------hhHH------HHhhhhhhHHhhhchhhccCcH-
Q 002370 235 GSLAAHPLLNFVF-NSLQVQSSFDVAIEVLVELVGRHEG--------LPQA------LLCRVPFLKELLLLPALTDGDE- 298 (930)
Q Consensus 235 ~~i~~~~ll~~l~-~~L~~~~~~~~a~~~l~ei~~~~~~--------~~~~------l~~~~~~l~~~~~~~~~~~~d~- 298 (930)
+.+..+..+..++ ..+..++.+..|++|+.++++.... +.+. .++..+...+.+. .....|.
T Consensus 224 ~~I~~tn~l~~~l~~~ln~~~~r~~al~CL~ei~s~~~~~~~~~~~~~~~~~~~~l~~i~~~l~~~~~~~--~~~~~dq~ 301 (1041)
T KOG2020|consen 224 GYIFETNILELLLNKFLNAPELRNNALSCLTELLSRKRSIYERKTVPMFNLTIYQLRSIPQDLDIPEVYS--SLSDEDQD 301 (1041)
T ss_pred HHHHHhhhHHHHHHhccchHHHHHHHHHHHHHHHhccccchhHHhHHHHHHHHHHHHHhhhhhchhhhhh--cccHhHHH
Confidence 5554444455454 5556789999999999999998642 1111 1222222333222 2223344
Q ss_pred hHHhhHHHHHHHHHHhhhHHHHhc----ChhHHHHHHHHHhcccCCCCCchhhhhcHHHHHHHHHHhhcc-chhh-----
Q 002370 299 KVIGGLACLMSEIGQAAPSLIVEA----SPEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGL-DASI----- 368 (930)
Q Consensus 299 d~~~~l~~l~~~~~e~~~~~l~~~----~~~~~~ll~~ll~~~~~p~~d~~v~~~~~~fW~~l~~~l~~~-~~~~----- 368 (930)
...++++.+++.+++.+..++... +.....+..+++..+-+ +-++...++++|..+..+++.. .+..
T Consensus 302 ~fi~~l~~~l~~f~~~~~~lle~~~~~~~~~~~~~~~li~i~~~~---~se~~~~~ld~W~~lv~~l~~~~~~ll~~s~~ 378 (1041)
T KOG2020|consen 302 SFIEKLAQFLSLFFEQHIALLESSLSQRPVLLEALLELILISTIE---PSEIFKICLDYWNKLVADLYYNKPPLLQLSTT 378 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCchhhhhHHHHHHHHHHHHhccC---chhHHHHHHHHHHHHHHhhhcccccccccccc
Confidence 678999999999999999999863 22223444444444444 3556667999999988776542 0000
Q ss_pred ------hhhhhhhhhhcHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCchHHHHH---------HHHHHHHHHHHHhcCc
Q 002370 369 ------AKNKKHVEDMFFSVFSALLDALLLRAQVDESSFNDDGMVDLPDGLVQFR---------MNLVELLVDICQLLRS 433 (930)
Q Consensus 369 ------~~~~~~~~~~~~~~~~~Ll~~l~~k~~~p~~~~~~~~~~d~~d~f~~~R---------~~~~d~l~~~~~~l~~ 433 (930)
..+-+-+...|..++.++....+.+|.-|+..+--+. +..+.+++++ ..+.+++...+.+-+.
T Consensus 379 ~~~~~~~~ri~~rk~~y~~~~~~~r~l~l~~m~~Pe~vlive~--~~~~~vre~~~~~~~~~ly~~~~e~l~~~~~L~~~ 456 (1041)
T KOG2020|consen 379 LPSISDYSRIDFRKSIYQEFLSKLRLLRLERMAKPEEVLIVEN--EQGEIVREFMKDHDFITLYPVLRETLVYLLHLDVV 456 (1041)
T ss_pred cccccchhccchHHHHHHHHHHHHHHHHHHHhcCchheeEEec--hHHHHHHHhccCcchhhhhHHHHHHHHHHHHhhhh
Confidence 0001123667889999999999999999987431100 1223333333 3344555554444322
Q ss_pred hH--HHHHHHHhhhcCCCCCCCchhhhHHHHHHHhhhhccccCCCccchh-HHHHHHHHhccCchhhhhhHHHHHHHHHH
Q 002370 434 AT--FIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFS-VIMQLVAVLSASRSEELKGFMHIVYRSLA 510 (930)
Q Consensus 434 ~~--~l~~~~~~~~~~~~~~~~W~~~Ea~L~~l~~iae~~~~~~~~~~l~-~i~~~l~~l~~~~~~~~~~~~~v~~~t~~ 510 (930)
.. ++..-+...+ .+..++|..+..-+|+++++++.+.++.....+. .+...+ .+.+....+ +..++....+|
T Consensus 457 ~t~~~~~~kl~~~l--~~~~~~~~~ln~l~~ai~sisg~~~e~~e~k~~~~v~~d~l-~l~E~~~~k--dn~avi~~Ni~ 531 (1041)
T KOG2020|consen 457 DTEKIMTEKLAIQL--DGDEWSLHNLNRLCWAIGSISGRMLEDMEKKFFVAVIRDLL-NLCERKRGK--DNKAVIASNIM 531 (1041)
T ss_pred hhhhhhhHhHHHHh--hHHHHhhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHH-HHHHHhhcC--CchhHHHHHHH
Confidence 11 1111111111 1235679999999999999988665432100011 122222 222222111 12356666789
Q ss_pred HHHHhhHHHHHhchhchHHHHHHHHHhcc--ccchhHHHHHHHHHHHHHhhcccCC--Cc-cHHHHHHHHHHHH--hcCC
Q 002370 511 DVIGSYSKWISAFQTNARPLLLFLAAGIS--EAVSSNACASALRKICEDASALIDE--PS-NLEILMWIGEALE--KRHL 583 (930)
Q Consensus 511 ~~ig~y~~wl~~~p~~L~~vl~~l~~~l~--~p~v~~~Aa~al~~lc~~c~~~l~~--p~-~~~~l~~~~~~l~--~~~l 583 (930)
+++|+|.+|++.|..+|+++...+++.++ |..++.+||.+|.++...|+.+++. +. ..+....+...+. ...+
T Consensus 532 ~vv~q~p~Fl~~h~~~Lkt~~~~L~efmhe~h~gvqdmacd~F~~ii~~~~~~fv~~~~~e~~~fv~~~~~~l~~i~~~l 611 (1041)
T KOG2020|consen 532 YVVGQYPRFLKAHWKFLKTVVHKLFEFMHETHEGVQDMACDTFIKIIQKCKRHFVITQLGETKPFVGELLLNLTAITEDL 611 (1041)
T ss_pred HHhcccchHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhhHHHHHHHHHhhhhhheeecccccccchHHHhhcccchhcCc
Confidence 99999999999999999999999999998 4668999999999999999985321 11 1222222333222 2456
Q ss_pred ChhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHHHHhhhhccCCC-CCCCCchhhHHHHHHhHHHHHhhhccccc
Q 002370 584 PLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNH-SLIHNPATYTQILSSATRGLYRMGTVFSH 662 (930)
Q Consensus 584 ~~~~~~~l~eai~~vi~~~p~~~~~~~~l~~ll~p~~~~l~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~l~~l~~i~~~ 662 (930)
.+..+...++++|.++.+-..+.....+...++.-.-..+.+++.++... +.-..+ +.+.+....+.....+.+.
T Consensus 612 ~~~q~~~~~~al~~~V~~~~~~~~~~~~~~~~~vl~~~~~~nii~~~~~~~~~l~~~----~~v~s~~~i~~~~~~~~~s 687 (1041)
T KOG2020|consen 612 QPQQRHTFYEALGLMVSAEIDPAKAERLQSKLMVLPNRAWINIILQARCNDEILKLL----ETVKSLLNILKTNSRALTS 687 (1041)
T ss_pred hHHHHHHHHHHHHHHHHHhCCHhhHHHHHhcccccchhhhcchhhcCcccHHhhcch----HHHHHHHHHHHhHHHHHHh
Confidence 78889999999997776644433345555555554455566655544321 110011 1122222222222333333
Q ss_pred ccccCCCCCCC-CchHHHHHHHHHHHHHHHHHh--hhccchHHHHHHHHHHHHHHHH---h-hh-----h-hHhhHHHHH
Q 002370 663 LPVPLPTNPAG-DDPIFALLRVFWPMLEKLFRS--EHMENGNLSTAACRALSLAIQS---S-GQ-----H-FVTLLPQVL 729 (930)
Q Consensus 663 l~~~~~~~~~~-~~p~~~~~~~i~~~l~~i~~~--~~~~~~~v~e~~c~~~~~~i~~---l-~~-----~-~~p~l~~l~ 729 (930)
+.+++....+- ..-...++...-+.++..... ....-.+.+.....+-+-+..- . +. . ...++|+.+
T Consensus 688 l~~~f~~~~~~~~~d~~~l~~~~s~~v~~~~~~~~~~~t~~~~v~~~~svk~ei~~~~~~~~~~~~~~~~~~~~~~~~~~ 767 (1041)
T KOG2020|consen 688 LGSTFVPQLGKIYLDMLQLYIKQSELVSINVTAGGSEKTKTPFVKTLRSVKREILKLLETFISKSEQRDLYLLMLVPPLL 767 (1041)
T ss_pred cCcccccccccccHHHHHHHHHhcccccHHHhcccccccccHHHHHHHHHHHHHHHHHHhccCcccchhHHHHhhhhHHH
Confidence 33322111110 111233333333333332221 0111122222222222111111 1 11 1 133567777
Q ss_pred HHHHHhhhhhCC---cchHHHHHHHHHHHhcCC-CCccchHHHHHHHHhhhHHHHHhhcCCCCCCCCchHHHHHHHHHHH
Q 002370 730 DCLSTNFVSFQN---HECYIRTASVVIEEFGHK-DEYGPLFVTTFERFSQAASVRALNSSYICDQEPDLVEAYTNFASTF 805 (930)
Q Consensus 730 ~~l~~~~~~~~~---~~~~L~l~~~li~~fg~~-~~~~~~l~~l~~~l~~~~~~~~l~~~~~~~~~pD~~~~~f~l~~~~ 805 (930)
...+-.|....| .+..+.+-..++...|+- ....+ ..+....+++ +.++. .++.+.||+...||.++..+
T Consensus 768 ~~~~fd~~~nvPd~r~~~vl~l~~~iv~~Lg~~i~~~~~---~i~~~v~~c~-l~m~~--~d~qe~~e~~~~f~~lle~l 841 (1041)
T KOG2020|consen 768 DAVLFDYLDNVPDYRENEVLSLNATIVPKLGEFIPAELP---LINIAVLECT-LEMIN--KDFQEYPEHRLNFLLLLEAL 841 (1041)
T ss_pred HHHHHHHHccCcchhcchHHHhhhhhhhhhhhHhhhhcc---HHHHHHHhhh-hhccc--cccccchHHHHHHHHHHHHH
Confidence 777766664323 344566667777766653 11222 1222333443 34443 47789999999999999999
Q ss_pred HhhhhHHHHhhchhchHHHHHHHHHhhccCchhHHHHHHHHHHHHHhhhhhhccCCCCCCCCccHHHHHHHHHHhhhHHH
Q 002370 806 VRTSRKEVLAASGALLEVSFQKAAICCTAMHRGAALAAMSYLSCFLEECLASLLGYTTSIPEGSFNAMAIQVISHSGEGL 885 (930)
Q Consensus 806 l~~~p~~~~~s~~~~l~~~l~~~l~~l~~~e~~~~~a~~~fl~~li~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~l 885 (930)
...++..+..-+++.+..+.+.+.++..+..|.+.++++..+..++...... + ...+..+..++..+
T Consensus 842 ~~~~~~~~~~l~~~~~~~~~~si~~~f~h~~r~i~~~~l~~l~~l~k~~~~~-----------~--~~~~~~~~~~~~~~ 908 (1041)
T KOG2020|consen 842 LLFCFPAFSELPADQVKLVSDSIVWAFHHTMRNIAENGLNILLELLKNLAEM-----------E--KFANAFYQTYFLSL 908 (1041)
T ss_pred HHhhhHHHHcCCchhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh-----------h--HHHHHHHHHHHHHH
Confidence 9999999887655666778888889998888999999999888877654321 1 23344555555555
Q ss_pred HHHHHHHhcccc
Q 002370 886 VSNVVYALLGVS 897 (930)
Q Consensus 886 v~~ll~~~~g~~ 897 (930)
....+.-+.+..
T Consensus 909 l~~~~~~~~~~~ 920 (1041)
T KOG2020|consen 909 LQKIIAVLTDTD 920 (1041)
T ss_pred HHHHHHHHhccc
Confidence 555555554433
No 8
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=6.5e-23 Score=224.55 Aligned_cols=631 Identities=14% Similarity=0.103 Sum_probs=397.7
Q ss_pred CCChHHHHHHHHHHHHhhcC--hHHHHHHHHhhccCCCCCCccchhHHhhhHHhHHHhc-----------cCcCCCChHH
Q 002370 19 DTESCNRVAANQWLVQFQQT--DAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQ-----------NEGYYLQSAA 85 (930)
Q Consensus 19 ~~d~~~~~~A~~~L~~fq~s--~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~ki~-----------~~~~~l~~e~ 85 (930)
+||+..|++|+++|.++|+. |..-....+.|..++ .+...|.-|+.+|++.+. .+|-++|.|.
T Consensus 12 SpD~n~~~~Ae~~l~~~~~~nf~~F~~~Ls~vl~n~~----~~~~~R~~AGL~LKN~L~akd~~~k~~~~qRWl~l~~e~ 87 (859)
T KOG1241|consen 12 SPDQNVRKRAEKQLEQAQSQNFPQFLVLLSEVLANDN----SSDVARMAAGLQLKNSLTAKDPERKQQYQQRWLQLPAEI 87 (859)
T ss_pred CCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHhccC----CcHHHHHHHhHHHhhhhccCCHHHHHHHHHHHHcCCHHH
Confidence 68888999999999999987 455555666676654 457999999999999886 4599999999
Q ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh---cccCchHHHHHHHhhcccCCCchhHHHHHHHhhhhccccc
Q 002370 86 KDALLNALLVAAKRFSSGPPQLLTQICLALSALILRA---VEHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVID 162 (930)
Q Consensus 86 ~~~lr~~Ll~~l~~~~~~~~~v~~kL~~~La~l~~~~---~~W~~~i~~li~~~~~~~~~~~~~~~~L~iL~~l~EE~~~ 162 (930)
++.+|+.++..|... .+...+--++++|.++.-. ..||+++..+.+.....++. ......|+.+..++|++.
T Consensus 88 reqVK~~il~tL~~~---ep~~~s~Aaq~va~IA~~ElP~n~wp~li~~lv~nv~~~~~~-~~k~~slealGyice~i~- 162 (859)
T KOG1241|consen 88 REQVKNNILRTLGSP---EPRRPSSAAQCVAAIACIELPQNQWPELIVTLVSNVGEEQAS-MVKESSLEALGYICEDID- 162 (859)
T ss_pred HHHHHHHHHHHcCCC---CCCccchHHHHHHHHHHhhCchhhCHHHHHHHHHhcccccch-HHHHHHHHHHHHHHccCC-
Confidence 999999999988742 1233344556666666443 36999999999998775422 345789999999999984
Q ss_pred ccccccCCCHHHHHHHHHHHHhhhhHHHHHHHHHHhhccCCCCCcchhhhHHHHHHHHHHHHHhccccccCcchhcccch
Q 002370 163 SQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPL 242 (930)
Q Consensus 163 ~~~~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~c~~sWi~~~~~~~~~~~~i~~~~l 242 (930)
+ +.+...+..|+.-+.+..... + ++..++..+++|+-.-+.|... .+.- +-..+-+
T Consensus 163 --------p--------evl~~~sN~iLtaIv~gmrk~---e---~s~~vRLaa~~aL~nsLef~~~-nF~~-E~ern~i 218 (859)
T KOG1241|consen 163 --------P--------EVLEQQSNDILTAIVQGMRKE---E---TSAAVRLAALNALYNSLEFTKA-NFNN-EMERNYI 218 (859)
T ss_pred --------H--------HHHHHHHhHHHHHHHhhcccc---C---CchhHHHHHHHHHHHHHHHHHH-hhcc-Hhhhcee
Confidence 1 134455666665555444332 1 4567999999999988776421 1111 1223446
Q ss_pred HHHHHHhcCCC--CcHHHHHHHHHHHHhccCChhHHHHhhhhhhHHhhhchhhccCcHhHHhhHHHHHHHHHHhhhHHHH
Q 002370 243 LNFVFNSLQVQ--SSFDVAIEVLVELVGRHEGLPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMSEIGQAAPSLIV 320 (930)
Q Consensus 243 l~~l~~~L~~~--~~~~~a~~~l~ei~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~d~d~~~~l~~l~~~~~e~~~~~l~ 320 (930)
+..+.++-+.| ++..+|..||+.|++.+.++.+ +.+ .+
T Consensus 219 MqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~---~yM---~~---------------------------------- 258 (859)
T KOG1241|consen 219 MQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFME---PYM---EQ---------------------------------- 258 (859)
T ss_pred eeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHH---HHH---HH----------------------------------
Confidence 66777666644 5667899999988876643222 111 01
Q ss_pred hcChhHHHHHHHHHhcccCCCCCchhhhhcHHHHHHHHHHhhccchh----hhhhhhh-hhhhcHHHHHHHHHHHHHHhc
Q 002370 321 EASPEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDAS----IAKNKKH-VEDMFFSVFSALLDALLLRAQ 395 (930)
Q Consensus 321 ~~~~~~~~ll~~ll~~~~~p~~d~~v~~~~~~fW~~l~~~l~~~~~~----~~~~~~~-~~~~~~~~~~~Ll~~l~~k~~ 395 (930)
.++..-+.-+..+ +++|+..++|||.+.+++-.++.-+ ....++. ....-+.-+.-+++++++.+.
T Consensus 259 -------alfaitl~amks~--~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~ 329 (859)
T KOG1241|consen 259 -------ALFAITLAAMKSD--NDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLT 329 (859)
T ss_pred -------HHHHHHHHHHcCC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHH
Confidence 1111111111222 5779999999999887754322100 0000111 111123445678888888887
Q ss_pred c-CCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHhcCchHHHHHHHHhhhcCCCCCCCchhhhHHHHHHHhhhhccccC
Q 002370 396 V-DESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSATFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQE 474 (930)
Q Consensus 396 ~-p~~~~~~~~~~d~~d~f~~~R~~~~d~l~~~~~~l~~~~~l~~~~~~~~~~~~~~~~W~~~Ea~L~~l~~iae~~~~~ 474 (930)
. +++. ++|++.-. +..+-+|+-.....|++ ++.+++.-+..+ ..+.+|+..||+.+++|+|-++-.++
T Consensus 330 kqde~~--------d~DdWnp~-kAAg~CL~l~A~~~~D~-Iv~~Vl~Fiee~-i~~pdwr~reaavmAFGSIl~gp~~~ 398 (859)
T KOG1241|consen 330 KQDEDD--------DDDDWNPA-KAAGVCLMLFAQCVGDD-IVPHVLPFIEEN-IQNPDWRNREAAVMAFGSILEGPEPD 398 (859)
T ss_pred hCCCCc--------ccccCcHH-HHHHHHHHHHHHHhccc-chhhhHHHHHHh-cCCcchhhhhHHHHHHHhhhcCCchh
Confidence 5 3322 22344332 33445666556666654 555554333221 23578999999999999998876543
Q ss_pred CCccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHh---chhchHHHHHHHHHhccc-cchhHHHHHH
Q 002370 475 GQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISA---FQTNARPLLLFLAAGISE-AVSSNACASA 550 (930)
Q Consensus 475 ~~~~~l~~i~~~l~~l~~~~~~~~~~~~~v~~~t~~~~ig~y~~wl~~---~p~~L~~vl~~l~~~l~~-p~v~~~Aa~a 550 (930)
.....++..++.+..+-.+|... ++.|+ -|++|+.++++.. |..++.+.++.++.|+++ |++...+|.|
T Consensus 399 ~Lt~iV~qalp~ii~lm~D~sl~------VkdTa-AwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~DePrva~N~CWA 471 (859)
T KOG1241|consen 399 KLTPIVIQALPSIINLMSDPSLW------VKDTA-AWTLGRIADFLPEAIINQELLQSKLSALLEGLNDEPRVASNVCWA 471 (859)
T ss_pred hhhHHHhhhhHHHHHHhcCchhh------hcchH-HHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhhCchHHHHHHHH
Confidence 22111122222333333455422 56555 5999999998764 567999999999999996 9999999999
Q ss_pred HHHHHHHhhcccCCC----ccHHHHHHHHHHHHh----cC-CChhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHH
Q 002370 551 LRKICEDASALIDEP----SNLEILMWIGEALEK----RH-LPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYE 621 (930)
Q Consensus 551 l~~lc~~c~~~l~~p----~~~~~l~~~~~~l~~----~~-l~~~~~~~l~eai~~vi~~~p~~~~~~~~l~~ll~p~~~ 621 (930)
|..|.+.|..-...+ +..+.+..++..|.. .+ -...-|...|++++-+|-..|.+ ....+..+..-++.
T Consensus 472 f~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~--vy~~v~~~~l~il~ 549 (859)
T KOG1241|consen 472 FISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDD--VYPMVQKLTLVILE 549 (859)
T ss_pred HHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHH--HHHHHHHHHHHHHH
Confidence 999999998644322 122344444444432 11 24567889999999999888875 35667888888899
Q ss_pred HHHhhhhccC-CCCCCCCchhhHHHHHHhHHHHHhhhcccccccccCCCCCCCCchHHHHHHHHHHHHHHHHHhhhccch
Q 002370 622 AIGKLIDGDN-NHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFRSEHMENG 700 (930)
Q Consensus 622 ~l~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~l~~l~~i~~~l~~~~~~~~~~~~p~~~~~~~i~~~l~~i~~~~~~~~~ 700 (930)
+|.+.++... +...+ ...+-|++.+ -.+|..+.|-+.+ -...+-.+++..+.++++ . +++.
T Consensus 550 kl~q~i~~~~l~~~dr----~q~~eLQs~L--c~~Lq~i~rk~~~----------~~~~~~d~iM~lflri~~-s-~~s~ 611 (859)
T KOG1241|consen 550 KLDQTISSQILSLADR----AQLNELQSLL--CNTLQSIIRKVGS----------DIREVSDQIMGLFLRIFE-S-KRSA 611 (859)
T ss_pred HHHHHHHHHhccHhhH----HHHHHHHHHH--HHHHHHHHHHccc----------cchhHHHHHHHHHHHHHc-C-Cccc
Confidence 9999887321 11111 1111122211 2334455554432 133455778888888887 3 5666
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhhhhhCC---cchHHHHHHHHHHHhcCCCCccchHHHHHH
Q 002370 701 NLSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTNFVSFQN---HECYIRTASVVIEEFGHKDEYGPLFVTTFE 771 (930)
Q Consensus 701 ~v~e~~c~~~~~~i~~l~~~~~p~l~~l~~~l~~~~~~~~~---~~~~L~l~~~li~~fg~~~~~~~~l~~l~~ 771 (930)
-+-|.+.-.+...+..+|+.|..++|.+.+++......+.. ......+.+-+....+++ +.+....+..
T Consensus 612 ~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~--i~py~d~~mt 683 (859)
T KOG1241|consen 612 VVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDD--ILPYCDELMT 683 (859)
T ss_pred cchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhh--hhhHHHHHHH
Confidence 67788888999999999999999999988888865532211 122344555555555543 3444444333
No 9
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=99.90 E-value=1.2e-17 Score=177.34 Aligned_cols=624 Identities=13% Similarity=0.089 Sum_probs=356.4
Q ss_pred CCChHHHHHHHHHHHHhhcChHH--HHHHHHhhccCCCCCCccchhHHhhhHHhHHHhc-----------cCcCCCChHH
Q 002370 19 DTESCNRVAANQWLVQFQQTDAA--WEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQ-----------NEGYYLQSAA 85 (930)
Q Consensus 19 ~~d~~~~~~A~~~L~~fq~s~~a--W~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~ki~-----------~~~~~l~~e~ 85 (930)
+||+..|..|++.|.++|+.+-. -.+..+.|...+ ++++.|..|+.+|++-+. .+|-.++.|.
T Consensus 16 spD~n~rl~aE~ql~~l~~~dF~qf~~ll~qvl~d~n----s~~~~Rm~agl~LKN~l~a~d~~~~~~~~qrW~~~~~E~ 91 (858)
T COG5215 16 SPDPNARLRAEAQLLELQSGDFEQFISLLVQVLCDLN----SNDQLRMVAGLILKNSLHANDPELQKGCSQRWLGMRHES 91 (858)
T ss_pred CCCCCccccHHHHHHHhccccHHHHHHHHHHHHhccC----CcHHHHHHHHHHHhhhhhcCCHHHHHHHHHhhccCCHHH
Confidence 57888999999999999986433 223444454443 467999999999999886 4599999999
Q ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH---HHhcccCchHHHHHHHhhcccCCCchhHHHHHHHhhhhccccc
Q 002370 86 KDALLNALLVAAKRFSSGPPQLLTQICLALSALI---LRAVEHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVID 162 (930)
Q Consensus 86 ~~~lr~~Ll~~l~~~~~~~~~v~~kL~~~La~l~---~~~~~W~~~i~~li~~~~~~~~~~~~~~~~L~iL~~l~EE~~~ 162 (930)
++.+|...+..|.+ ..|+ +-+--+..++.++ +....||+++..+....+.++. .......|.++...+|-..
T Consensus 92 k~qvK~~al~aL~s--~epr-~~~~Aaql~aaIA~~Elp~~~wp~lm~~mv~nvg~eqp-~~~k~~sl~~~gy~ces~~- 166 (858)
T COG5215 92 KEQVKGMALRALKS--PEPR-FCTMAAQLLAAIARMELPNSLWPGLMEEMVRNVGDEQP-VSGKCESLGICGYHCESEA- 166 (858)
T ss_pred HHHHHHHHHHHhcC--CccH-HHHHHHHHHHHHHHhhCccccchHHHHHHHHhccccCc-hHhHHHHHHHHHHHhhccC-
Confidence 99999999998875 2233 3333444455554 3334699999999998876542 2344567778888776542
Q ss_pred ccccccCCCHHHHHHHHHHHHhhhhHHHHHHHHHHhhccCCCCCcchhhhHHHHHHHHHHHHHhccccccCcchhcccch
Q 002370 163 SQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPL 242 (930)
Q Consensus 163 ~~~~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~c~~sWi~~~~~~~~~~~~i~~~~l 242 (930)
+ +.+.+....++--+...-.. ++ ++..++..+|+|+-.-+-+... .+.- +-..+-+
T Consensus 167 --------P--------e~li~~sN~il~aiv~ga~k---~e---t~~avRLaaL~aL~dsl~fv~~-nf~~-E~erNy~ 222 (858)
T COG5215 167 --------P--------EDLIQMSNVILFAIVMGALK---NE---TTSAVRLAALKALMDSLMFVQG-NFCY-EEERNYF 222 (858)
T ss_pred --------H--------HHHHHHhhHHHHHHHHhhcc---cC---chHHHHHHHHHHHHHHHHHHHH-hhcc-hhhhchh
Confidence 1 22333333333322222222 12 4567999999999763322100 1111 1123345
Q ss_pred HHHHHHhcCCC--CcHHHHHHHHHHHHhccCChhHHHHhhhhhhHHhhhchhhccCcHhHHhhHHHHHHHHHHhhhHHHH
Q 002370 243 LNFVFNSLQVQ--SSFDVAIEVLVELVGRHEGLPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMSEIGQAAPSLIV 320 (930)
Q Consensus 243 l~~l~~~L~~~--~~~~~a~~~l~ei~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~d~d~~~~l~~l~~~~~e~~~~~l~ 320 (930)
++.+.+.-+.+ ++.-+|..|++.|+..+.++.+..++
T Consensus 223 mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE----------------------------------------- 261 (858)
T COG5215 223 MQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYME----------------------------------------- 261 (858)
T ss_pred heeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------------------
Confidence 55555555433 44556667777666554332221111
Q ss_pred hcChhHHHHHHHHHhcccCCCCCchhhhhcHHHHHHHHHHhhccc--hhhhhhhhhhhhhc-HHHHHHHHHHHHHHhcc-
Q 002370 321 EASPEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLD--ASIAKNKKHVEDMF-FSVFSALLDALLLRAQV- 396 (930)
Q Consensus 321 ~~~~~~~~ll~~ll~~~~~p~~d~~v~~~~~~fW~~l~~~l~~~~--~~~~~~~~~~~~~~-~~~~~~Ll~~l~~k~~~- 396 (930)
..+..+.-+.+..| +++|...++|||..++++-.+.+ .....+.+....-| +.-...+++.++.-+..
T Consensus 262 ------~aL~alt~~~mks~--nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q 333 (858)
T COG5215 262 ------NALAALTGRFMKSQ--NDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQ 333 (858)
T ss_pred ------HHHHHHHHHHhcCc--chHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhc
Confidence 12233333444555 68899999999988776532111 00000000000011 12233445555554443
Q ss_pred CCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHhcCchHHHHHHHHhhhcCCCCCCCchhhhHHHHHHHhhhhccccCCC
Q 002370 397 DESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSATFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQ 476 (930)
Q Consensus 397 p~~~~~~~~~~d~~d~f~~~R~~~~d~l~~~~~~l~~~~~l~~~~~~~~~~~~~~~~W~~~Ea~L~~l~~iae~~~~~~~ 476 (930)
.+|-..|+| .-. ...+-+++--..+.| ++++..++.-... ...+.+|..+|++..++|++-++-.++.-
T Consensus 334 ~ed~~~DdW--------n~s-maA~sCLqlfaq~~g-d~i~~pVl~FvEq-ni~~~~w~nreaavmAfGSvm~gp~~~~l 402 (858)
T COG5215 334 GEDYYGDDW--------NPS-MAASSCLQLFAQLKG-DKIMRPVLGFVEQ-NIRSESWANREAAVMAFGSVMHGPCEDCL 402 (858)
T ss_pred CCCcccccc--------chh-hhHHHHHHHHHHHhh-hHhHHHHHHHHHH-hccCchhhhHHHHHHHhhhhhcCccHHHH
Confidence 333222233 221 122334443334444 4455554433222 22467899999999999999876554332
Q ss_pred ccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHh--chh-chHHHHHHHHHhccc-cchhHHHHHHHH
Q 002370 477 AFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISA--FQT-NARPLLLFLAAGISE-AVSSNACASALR 552 (930)
Q Consensus 477 ~~~l~~i~~~l~~l~~~~~~~~~~~~~v~~~t~~~~ig~y~~wl~~--~p~-~L~~vl~~l~~~l~~-p~v~~~Aa~al~ 552 (930)
...+++.++.+...-+++-. -+..+|+ |++|+.++++.. +|. +|+......+-|+.+ |.....++.++.
T Consensus 403 T~~V~qalp~i~n~m~D~~l------~vk~ttA-wc~g~iad~va~~i~p~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~ 475 (858)
T COG5215 403 TKIVPQALPGIENEMSDSCL------WVKSTTA-WCFGAIADHVAMIISPCGHLVLEVSASLIGLMDCPFRSINCSWRKE 475 (858)
T ss_pred HhhHHhhhHHHHHhccccee------ehhhHHH-HHHHHHHHHHHHhcCccccccHHHHHHHhhhhccchHHhhhHHHHH
Confidence 11122333333333344432 1456675 999999999875 554 788999999988875 888899999999
Q ss_pred HHHHHhhccc------CCCccHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHHHHhh
Q 002370 553 KICEDASALI------DEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKL 626 (930)
Q Consensus 553 ~lc~~c~~~l------~~p~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~~l~~ll~p~~~~l~~~ 626 (930)
+|.+.-.+.. ..++++.++..+...-....-+...|...++++|.+|---|+. ..+.+-.+.+....++.+.
T Consensus 476 nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~--V~~~~a~~~~~~~~kl~~~ 553 (858)
T COG5215 476 NLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDA--VSDILAGFYDYTSKKLDEC 553 (858)
T ss_pred hHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchh--HHHHHHHHHHHHHHHHHHH
Confidence 9886544321 1123444444444332222235678999999999999877764 4566778888888888887
Q ss_pred hhccCCCCCCCCchhhHHHHHHhHHHHHhhhcccccccccCCCCCCCCchHHHHHHHHHHHHHHHHHhhhccchHHHHHH
Q 002370 627 IDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFRSEHMENGNLSTAA 706 (930)
Q Consensus 627 ~~~~~~~~~~~~~~~~~~~l~~~~~~l~~l~~i~~~l~~~~~~~~~~~~p~~~~~~~i~~~l~~i~~~~~~~~~~v~e~~ 706 (930)
+.-....-..++... .+-|+ -..+..|.++++...++. .+ +-.+++..+-++++. - +..-+-+.+
T Consensus 554 isv~~q~l~~eD~~~-~~elq--SN~~~vl~aiir~~~~~i-------e~---v~D~lm~Lf~r~les-~-~~t~~~~dV 618 (858)
T COG5215 554 ISVLGQILATEDQLL-VEELQ--SNYIGVLEAIIRTRRRDI-------ED---VEDQLMELFIRILES-T-KPTTAFGDV 618 (858)
T ss_pred HHHhhhhhhhHHHHH-HHHHH--HHHHHHHHHHHHhcCCCc-------cc---HHHHHHHHHHHHHhc-c-CCchhhhHH
Confidence 765321000001111 11111 123444455665443322 12 224566777777763 2 233344567
Q ss_pred HHHHHHHHHHhhhhhHhhHHHHHHHHHHhhhhhCC--cchHHHHHHHHHHHhcCC
Q 002370 707 CRALSLAIQSSGQHFVTLLPQVLDCLSTNFVSFQN--HECYIRTASVVIEEFGHK 759 (930)
Q Consensus 707 c~~~~~~i~~l~~~~~p~l~~l~~~l~~~~~~~~~--~~~~L~l~~~li~~fg~~ 759 (930)
...+.....++++.+..+++.+++++......+.. ..+.+.+..-+....|.+
T Consensus 619 ~~aIsal~~sl~e~Fe~y~~~fiPyl~~aln~~d~~v~~~avglvgdlantl~~d 673 (858)
T COG5215 619 YTAISALSTSLEERFEQYASKFIPYLTRALNCTDRFVLNSAVGLVGDLANTLGTD 673 (858)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhh
Confidence 77778888888888888888888888765543311 122344444454555543
No 10
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=1.8e-14 Score=163.85 Aligned_cols=708 Identities=14% Similarity=0.119 Sum_probs=382.0
Q ss_pred HHHHHHHHhccCCChHHHHHHHHHHHHhhcChHHHHHHHHhhccCCCCCCccchhHHhhhHHhHHHhccCcCCC------
Q 002370 8 KVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYL------ 81 (930)
Q Consensus 8 ~v~~av~~ly~~~d~~~~~~A~~~L~~fq~s~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~ki~~~~~~l------ 81 (930)
.+.+++.+=. .+||..|+.|++.|+++++.|.--..+.++...+. .+..||.-||.=|++||.+.|..-
T Consensus 5 ~l~~~~~~T~-d~d~~~R~~AE~~L~q~~K~pgFv~~lLqIi~~d~----~~l~vrqaaaIYlKN~I~~~W~~~~~~g~~ 79 (1010)
T KOG1991|consen 5 SLLQIFRATI-DSDAKERKAAEQQLNQLEKQPGFVSSLLQIIMDDG----VPLPVRQAAAIYLKNKITKSWSSHEAPGRP 79 (1010)
T ss_pred HHHHHHHHhc-CCChHHHHHHHHHHHHhhcCCcHHHHHHHHHHccC----CchhHHHHHHHHHHHHHHhcCCccCCCCCc
Confidence 4445554422 46789999999999999999999999999998765 458899999999999999999854
Q ss_pred ---ChHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhc--ccCchHHHHHHHhhcccCCCchhHHHHHHHhhh
Q 002370 82 ---QSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRAV--EHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVL 156 (930)
Q Consensus 82 ---~~e~~~~lr~~Ll~~l~~~~~~~~~v~~kL~~~La~l~~~~~--~W~~~i~~li~~~~~~~~~~~~~~~~L~iL~~l 156 (930)
+++++..+|+.++..+.+ +|..+|.++..++-.+...-. .||+.++.+-..++++ +.......|..|..|
T Consensus 80 ~~I~e~dk~~irenIl~~iv~---~p~~iRvql~~~l~~Ii~~D~p~~Wp~l~d~i~~~Lqs~--~~~~vy~aLl~l~qL 154 (1010)
T KOG1991|consen 80 FGIPEEDKAVIRENILETIVQ---VPELIRVQLTACLNTIIKADYPEQWPGLLDKIKNLLQSQ--DANHVYGALLCLYQL 154 (1010)
T ss_pred CCCChHHHHHHHHHHHHHHHh---CchHHHHHHHHHHHHHHhcCCcccchhHHHHHHHHhcCc--chhhHHHHHHHHHHH
Confidence 789999999999999985 589999999999977776653 6999999999999874 334455666666666
Q ss_pred hcccccccccccCCCHHHHHHHHHHHHhhhhHHHHHHHHHHhhccCCCCCcchhhhHHHHHHHHHHHHHhccccccCcch
Q 002370 157 PEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGS 236 (930)
Q Consensus 157 ~EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~c~~sWi~~~~~~~~~~~~ 236 (930)
.--- +. -...+|.-+...+....|.+++.....+...+. ....+....++-|.+-+.+ ++|...
T Consensus 155 ~k~y---e~----k~~eeR~~l~~~v~~~fP~il~~~~~ll~~~s~-----~s~el~klIlKifks~~~~----~LP~~L 218 (1010)
T KOG1991|consen 155 FKTY---EW----KKDEERQPLGEAVEELFPDILQIFNGLLSQESY-----QSVELQKLILKIFKSLIYY----ELPLEL 218 (1010)
T ss_pred HHHH---hh----ccccccccHHHHHHHHHHHHHHHHHhhccccch-----HHHHHHHHHHHHHHHHHHH----hCCHHh
Confidence 4211 11 123455566666777889999988887776532 3456888999999999987 566654
Q ss_pred hcccchHHHHHHhcCCCCcHHHHHHHHHHHHhccCC------------------hhHHHHhhhhhhHHhhhchhhc-cCc
Q 002370 237 LAAHPLLNFVFNSLQVQSSFDVAIEVLVELVGRHEG------------------LPQALLCRVPFLKELLLLPALT-DGD 297 (930)
Q Consensus 237 i~~~~ll~~l~~~L~~~~~~~~a~~~l~ei~~~~~~------------------~~~~l~~~~~~l~~~~~~~~~~-~~d 297 (930)
+. ++.+..-++.+..++++.-. -.+..+..+..+.++|-..... .+.
T Consensus 219 ~~--------------~~~f~~W~~l~l~i~~rpvP~E~l~~d~e~R~~~~wwK~KKWa~~~L~Rlf~Ryg~~~~~~~~y 284 (1010)
T KOG1991|consen 219 SA--------------PETFTSWMELFLSILNRPVPVEVLSLDPEDRSSWPWWKCKKWALHILNRLFERYGSPSLVVPEY 284 (1010)
T ss_pred hC--------------chhHHHHHHHHHHHHcCCCChhcccCChhhcccccchhhHHHHHHHHHHHHHHhCCccccchhh
Confidence 32 23333333334444443210 1122222222232332211111 112
Q ss_pred HhHHhhHHHHH-HHHHHhhhHHHHhcChhHHHHHHHHHhcccCCCCCchhhhhcHHHHHHHHHHhhccchhhhhhhhhhh
Q 002370 298 EKVIGGLACLM-SEIGQAAPSLIVEASPEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAKNKKHVE 376 (930)
Q Consensus 298 ~d~~~~l~~l~-~~~~e~~~~~l~~~~~~~~~ll~~ll~~~~~p~~d~~v~~~~~~fW~~l~~~l~~~~~~~~~~~~~~~ 376 (930)
.++..-+++-+ ..+.+.+.+.+..- -. -.+- ...|-..++.|... .. . ....+
T Consensus 285 ~~Fa~~f~~n~~~~ile~~lk~l~~~-----------~~-~~yl--s~rvl~~~l~fl~~----~V--s------~~~tw 338 (1010)
T KOG1991|consen 285 KEFAQMFLKNFAQGILEVFLKILEQW-----------RQ-QLYL--SDRVLYYLLNFLEQ----CV--S------HASTW 338 (1010)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----------Hh-cccC--CHHHHHHHHHHHHH----hc--c------HHHHH
Confidence 22222222211 12222233322210 00 0010 11122222333211 11 0 01344
Q ss_pred hhcHHHHHHHHHHHH-HHhccCCCCCCCCCCCCCCchHHHHHH-------------HHHHHHHHHHHhcCchH------H
Q 002370 377 DMFFSVFSALLDALL-LRAQVDESSFNDDGMVDLPDGLVQFRM-------------NLVELLVDICQLLRSAT------F 436 (930)
Q Consensus 377 ~~~~~~~~~Ll~~l~-~k~~~p~~~~~~~~~~d~~d~f~~~R~-------------~~~d~l~~~~~~l~~~~------~ 436 (930)
...+|.+.-++..++ .-|.|-+++. +.|+. |-.++ -|+ ...+++-.++.--|.+. +
T Consensus 339 kll~PHl~~ii~~vIFPlmc~~d~de-elwe~-DP~EY--iR~~~Di~ed~~sp~~Aa~~~l~~~~~KR~ke~l~k~l~F 414 (1010)
T KOG1991|consen 339 KLLKPHLQVIIQDVIFPLMCFNDEDE-ELWEE-DPYEY--IRKKFDIFEDGYSPDTAALDFLTTLVSKRGKETLPKILSF 414 (1010)
T ss_pred HHhhhHHHHHHHHhhhhhcCCCcccH-HHHhc-CHHHH--HHhcCchhcccCCCcHHHHHHHHHHHHhcchhhhhhHHHH
Confidence 566777766665443 3444422211 13421 11222 222 22244444444433331 2
Q ss_pred HHHHHHhhhcCCCCCCCchhhhHHHHHHHhhhhccccCCCccchhHHHH-----HHHHhccCchhhhhhHHHHHHHHHHH
Q 002370 437 IQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQ-----LVAVLSASRSEELKGFMHIVYRSLAD 511 (930)
Q Consensus 437 l~~~~~~~~~~~~~~~~W~~~Ea~L~~l~~iae~~~~~~~~~~l~~i~~-----~l~~l~~~~~~~~~~~~~v~~~t~~~ 511 (930)
+..++.+...+.....+-+..|.||+.++++++-+.+... +...++ .+-.....|.. .+|.++ |+
T Consensus 415 ~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~---~~~~mE~flv~hVfP~f~s~~g------~Lrara-c~ 484 (1010)
T KOG1991|consen 415 IVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSP---YKSQMEYFLVNHVFPEFQSPYG------YLRARA-CW 484 (1010)
T ss_pred HHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCc---hHHHHHHHHHHHhhHhhcCchh------HHHHHH-HH
Confidence 2223332222222345689999999999999987765332 223333 22222244432 156767 69
Q ss_pred HHHhhHHHHHhchhchHHHHHHHHHhcc-ccc--hhHHHHHHHHHHHHHhhcc---cCCCccHHHHHHHHHHHHhcCCCh
Q 002370 512 VIGSYSKWISAFQTNARPLLLFLAAGIS-EAV--SSNACASALRKICEDASAL---IDEPSNLEILMWIGEALEKRHLPL 585 (930)
Q Consensus 512 ~ig~y~~wl~~~p~~L~~vl~~l~~~l~-~p~--v~~~Aa~al~~lc~~c~~~---l~~p~~~~~l~~~~~~l~~~~l~~ 585 (930)
++++|++-==..|..+..++....++|. +++ |+--||-|++.|...|... +. .+++.+++-.-.+.+ ..+.
T Consensus 485 vl~~~~~~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~--~hvp~~mq~lL~L~n-e~En 561 (1010)
T KOG1991|consen 485 VLSQFSSIDFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVS--AHVPPIMQELLKLSN-EVEN 561 (1010)
T ss_pred HHHHHHhccCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHh--hhhhHHHHHHHHHHH-hcch
Confidence 9999995211357788999999999998 444 8999999999999999853 32 244433222211111 2355
Q ss_pred hhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCchhhHHHHHHhHHHHHhhhcccccccc
Q 002370 586 EDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPV 665 (930)
Q Consensus 586 ~~~~~l~eai~~vi~~~p~~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~l~~i~~~l~~ 665 (930)
++...+++.+-.= -+ +....+--.+++-+.+..-++++...+.+...+ +. ++ .+..+++.+.+++..+..
T Consensus 562 d~Lt~vme~iV~~---fs--eElsPfA~eL~q~La~~F~k~l~~~~~~~~~~d-dk---~i-aA~GiL~Ti~Til~s~e~ 631 (1010)
T KOG1991|consen 562 DDLTNVMEKIVCK---FS--EELSPFAVELCQNLAETFLKVLQTSEDEDESDD-DK---AI-AASGILRTISTILLSLEN 631 (1010)
T ss_pred hHHHHHHHHHHHH---HH--HhhchhHHHHHHHHHHHHHHHHhccCCCCccch-HH---HH-HHHHHHHHHHHHHHHHhc
Confidence 6666666654432 22 224455556777777777777775221111111 11 11 245666666677665542
Q ss_pred cCCCCCCCCch-HHHHH-HHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhhhhhCC--
Q 002370 666 PLPTNPAGDDP-IFALL-RVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTNFVSFQN-- 741 (930)
Q Consensus 666 ~~~~~~~~~~p-~~~~~-~~i~~~l~~i~~~~~~~~~~v~e~~c~~~~~~i~~l~~~~~p~l~~l~~~l~~~~~~~~~-- 741 (930)
|| ++..+ ..+.|++..++.+ +-.++.|.+|.+... .+.+-.++.|-+=.+.+.+.+.|.+. .
T Consensus 632 ---------~p~vl~~le~~~l~vi~~iL~~---~i~dfyeE~~ei~~~-~t~~~~~Isp~mW~ll~li~e~~~~~-~~d 697 (1010)
T KOG1991|consen 632 ---------HPEVLKQLEPIVLPVIGFILKN---DITDFYEELLEIVSS-LTFLSKEISPIMWGLLELILEVFQDD-GID 697 (1010)
T ss_pred ---------cHHHHHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHhh-hhhhhcccCHHHHHHHHHHHHHHhhh-hHH
Confidence 44 33222 3456666666652 234677777776654 33333334443333444445555432 1
Q ss_pred -cchHHHHHHHHHHHhcCCCCc-cchHHHHHHHHhhhHHHHHhhcCCCCCCCCchHHHHHHHHHHHHhhhhHHHHhhchh
Q 002370 742 -HECYIRTASVVIEEFGHKDEY-GPLFVTTFERFSQAASVRALNSSYICDQEPDLVEAYTNFASTFVRTSRKEVLAASGA 819 (930)
Q Consensus 742 -~~~~L~l~~~li~~fg~~~~~-~~~l~~l~~~l~~~~~~~~l~~~~~~~~~pD~~~~~f~l~~~~l~~~p~~~~~s~~~ 819 (930)
.+.++.++...| .+|...-. .+...+.+..++.. .+.+. -.+++|. +..+.++.-++..|-+ .+. .
T Consensus 698 yf~d~~~~l~N~v-t~g~~~~~s~~~y~~il~~i~~~----~l~~e--~~~D~d~-~~a~kLle~iiL~~kg-~~d---q 765 (1010)
T KOG1991|consen 698 YFTDMMPALHNYV-TYGTPSLLSNPDYLQILLEIIKK----VLTSE--NGEDSDC-ESACKLLEVIILNCKG-LLD---Q 765 (1010)
T ss_pred HHHHHHHHHhhhe-eeCchhhhccchHHHHHHHHHHH----HHcCC--CCchHHH-HHHHHHHHHHHHHhcC-cHh---h
Confidence 111222222222 23433211 11111122222221 23331 1234443 3445777777777766 332 2
Q ss_pred chHHHHHHHHHhhcc
Q 002370 820 LLEVSFQKAAICCTA 834 (930)
Q Consensus 820 ~l~~~l~~~l~~l~~ 834 (930)
.++.++..++..++.
T Consensus 766 ~iplf~~~a~~~l~~ 780 (1010)
T KOG1991|consen 766 YIPLFLELALSRLTR 780 (1010)
T ss_pred HhHHHHHHHHHHHhc
Confidence 456666666666654
No 11
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.67 E-value=2.3e-10 Score=127.94 Aligned_cols=722 Identities=13% Similarity=0.108 Sum_probs=366.5
Q ss_pred HHHHHHHHHHHhccCCChHHHHHHHHHHHHhhcChHHHHHHHHhhccCCCCCCccchhHHhhhHHhHHHhccCcCC----
Q 002370 5 LQIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYY---- 80 (930)
Q Consensus 5 ~~~~v~~av~~ly~~~d~~~~~~A~~~L~~fq~s~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~ki~~~~~~---- 80 (930)
..+++.+.+..=. .|||+.|+.|++.|++.+..+.-=-....|+..+. .+.++|.-||..+++.|+++|..
T Consensus 3 ~le~l~~~l~qTl-~pdps~rk~aEr~L~~~e~q~~y~l~lL~Lv~~~~----~d~~~r~aaav~fKN~iKr~W~~~~~~ 77 (960)
T KOG1992|consen 3 NLETLANYLLQTL-SPDPSVRKPAERALRSLEGQQNYPLLLLNLVANGQ----QDPQIRVAAAVYFKNYIKRNWIPAEDS 77 (960)
T ss_pred cHHHHHHHHHhcC-CCCCccCchHHHHHHHhccCCCchHHHHHHHhccC----cChhHHHHHHHHHHHHHHhccCcCCCC
Confidence 3456666665521 57889999999999998876432233455555432 46899999999999999999975
Q ss_pred ---CChHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh-c-ccCchHHHHHHHhhcccCCCchhHHHHHHHhh
Q 002370 81 ---LQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRA-V-EHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTV 155 (930)
Q Consensus 81 ---l~~e~~~~lr~~Ll~~l~~~~~~~~~v~~kL~~~La~l~~~~-~-~W~~~i~~li~~~~~~~~~~~~~~~~L~iL~~ 155 (930)
+.+++++.+|.-++....+ .+..+..+|+.+++.++.+. + .||+.+++++..++++ +-+.....|..-
T Consensus 78 ~~~i~~~~~e~ikslIv~lMl~---s~~~iQ~qlseal~~Ig~~DFP~kWptLl~dL~~~ls~~--D~~~~~gVL~ta-- 150 (960)
T KOG1992|consen 78 PIKIIEEDREQIKSLIVTLMLS---SPFNIQKQLSEALSLIGKRDFPDKWPTLLPDLVARLSSG--DFNVINGVLVTA-- 150 (960)
T ss_pred ccccchhHHHHHHHHHHHHHhc---CcHHHHHHHHHHHHHHhccccchhhHHHHHHHHhhcccc--chHHHHHHHHHH--
Confidence 3457888888888887663 56789999999999999876 3 6999999999999863 222222333221
Q ss_pred hhcccccccccccCCCHHHHHHHHHHHHhhhhHHHHHHHHHHhhccCCCCCcchhhhHHHHHHHHHHHHHhccccccCcc
Q 002370 156 LPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQG 235 (930)
Q Consensus 156 l~EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~c~~sWi~~~~~~~~~~~ 235 (930)
..-+...|... -+++--.+++..+.+.+....+++.+..+...... .+ . ..++.|.+.
T Consensus 151 -hsiFkr~R~ef--rSdaL~~EIK~vLd~f~~Plt~Lf~~t~~l~~~~~---~~-----~--~~l~~lf~v--------- 208 (960)
T KOG1992|consen 151 -HSIFKRYRPEF--RSDALWLEIKLVLDRFAEPLTDLFRKTMELIQRHA---ND-----A--AALNILFGV--------- 208 (960)
T ss_pred -HHHHHhcCccc--ccHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhhcc---cc-----h--hHHHHHHHH---------
Confidence 11121111110 13333445555555555555555555443321100 01 1 155566552
Q ss_pred hhcccchHHHHHHhcCC---CCcHHHHHHHHHHHHhccCChhHHHHhhhhhhHHhhhchhhccCcH------hHHhhHHH
Q 002370 236 SLAAHPLLNFVFNSLQV---QSSFDVAIEVLVELVGRHEGLPQALLCRVPFLKELLLLPALTDGDE------KVIGGLAC 306 (930)
Q Consensus 236 ~i~~~~ll~~l~~~L~~---~~~~~~a~~~l~ei~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~d~------d~~~~l~~ 306 (930)
. -++.-+|..|.. |+.|+-=+ +..++..+.+.. +.+..++.+++ +.-..+|.
T Consensus 209 l----ll~~klfysLn~QDiPEFFEdnm--------------~~wM~~F~k~l~-~~~p~le~~~ee~~~l~~lka~ICE 269 (960)
T KOG1992|consen 209 L----LLICKLFYSLNFQDIPEFFEDNM--------------KTWMGAFHKLLT-YDNPLLESDEEEATVLDKLKAQICE 269 (960)
T ss_pred H----HHHHHHHHhhhcccchHHHHhhH--------------HHHHHHHHHHHh-ccCcccccCcccccHHHHHHHHHHH
Confidence 1 134445555542 23332211 112222222111 11122222221 12235555
Q ss_pred HHHHHHHhhhHHHHhcChhH-HHHHHHHHhcccCCCCCch-hhhhcHHHHHHHHHHhhccchhhhhhhhhhhhhcHHHH-
Q 002370 307 LMSEIGQAAPSLIVEASPEA-LALADALLSCVAFPSEDWE-IADSTLQFWSTLASYILGLDASIAKNKKHVEDMFFSVF- 383 (930)
Q Consensus 307 l~~~~~e~~~~~l~~~~~~~-~~ll~~ll~~~~~p~~d~~-v~~~~~~fW~~l~~~l~~~~~~~~~~~~~~~~~~~~~~- 383 (930)
+|+-..+.|-.-+..--+++ .....++...+..+ .|| ...-++.|.....+. +.|..+|
T Consensus 270 i~~LY~~kYeEef~~fl~~fv~~~W~LL~~~s~~~--kyD~Lvs~Al~FLt~V~~r----------------~~y~~~F~ 331 (960)
T KOG1992|consen 270 IFNLYATKYEEEFQPFLPDFVTATWNLLVSTSPDT--KYDYLVSKALQFLTSVSRR----------------PHYAELFE 331 (960)
T ss_pred HHHHHHHhhHHHHHhhHHHHHHHHHHHHHhcCCCc--cHHHHHHHHHHHHHHHHhh----------------hhhHhhhc
Confidence 55544444433222111122 23455556666666 455 456677886664331 2233333
Q ss_pred -HHHHHHHHHHhccCCCCCCC-CCCC--C----------CCchHHHHHHHHHHHHHHHHHhcCch--HHHHHHHHhhhc-
Q 002370 384 -SALLDALLLRAQVDESSFND-DGMV--D----------LPDGLVQFRMNLVELLVDICQLLRSA--TFIQKVFFGSWG- 446 (930)
Q Consensus 384 -~~Ll~~l~~k~~~p~~~~~~-~~~~--d----------~~d~f~~~R~~~~d~l~~~~~~l~~~--~~l~~~~~~~~~- 446 (930)
.+.+..+.++...|.-.... |++- | |..|-..-|+...|+++..+..-... .++..-.+.++.
T Consensus 332 ~~~vl~~i~e~VvlpN~~lR~eDeElFED~pleYiRRDlEGsDvdTRRR~a~dlvrgL~~~fe~~vt~v~~~~v~~~l~~ 411 (960)
T KOG1992|consen 332 GENVLAQICEKVVLPNLILREEDEELFEDNPLEYIRRDLEGSDVDTRRRAAIDLVRGLCKNFEGQVTGVFSSEVQRLLDQ 411 (960)
T ss_pred chHHHHHHHHhhcccccccchhhHHHhccCHHHHHHHhcccCCcchhHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence 35566666666666432210 0000 0 11122223445557777766554221 123222233222
Q ss_pred -CCCCCCCchhhhHHHHHHHhhhh-------ccccCCCccchhHHH--HHHHHhccCchhhhhhHHHHHHHHHHHHHHhh
Q 002370 447 -SANVPIPWKEVETKLFALNVVSE-------VVLQEGQAFDFSVIM--QLVAVLSASRSEELKGFMHIVYRSLADVIGSY 516 (930)
Q Consensus 447 -~~~~~~~W~~~Ea~L~~l~~iae-------~~~~~~~~~~l~~i~--~~l~~l~~~~~~~~~~~~~v~~~t~~~~ig~y 516 (930)
..+++.+|...+.++|.+.++|- ++....+-.++...+ +++..+.+ | ....++-+++.++ .|
T Consensus 412 y~~nPS~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvdv~~Ff~~~ilp~L~s-~--~vn~~pilka~aI-----Ky 483 (960)
T KOG1992|consen 412 YSKNPSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVDVVDFFANQILPDLLS-P--NVNEFPILKADAI-----KY 483 (960)
T ss_pred hccCCCccccccchhhhhhHHHHhhcchhhcceeeccccccHHHHHHHHhhHHhcc-C--ccccccchhhccc-----ce
Confidence 13456789999999999999873 232212111122211 12333322 0 0011111333232 22
Q ss_pred HHHHHh--chhchHHHHHHHHHhccccc--hhHHHHHHHHHHHHHhhc---ccCCCc-----cHHHHHHHHHHHHhcCCC
Q 002370 517 SKWISA--FQTNARPLLLFLAAGISEAV--SSNACASALRKICEDASA---LIDEPS-----NLEILMWIGEALEKRHLP 584 (930)
Q Consensus 517 ~~wl~~--~p~~L~~vl~~l~~~l~~p~--v~~~Aa~al~~lc~~c~~---~l~~p~-----~~~~l~~~~~~l~~~~l~ 584 (930)
.--|.+ .|+++...++-+.+++..+. |-.-||.++.++-.-|.+ .+..|. ....+..+.+.+..+.
T Consensus 484 ~~~FR~ql~~~~lm~~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p~-- 561 (960)
T KOG1992|consen 484 IYTFRNQLGKEHLMALLPRLIRFLEAESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSLPG-- 561 (960)
T ss_pred eeeecccCChHHHHHHHHHHHHhccCcchHHHHHHHHHHHhccccccCccccccchhhcchHHHHHHHHHHHhccCCc--
Confidence 222344 36788899999999988643 778999999888766655 332222 2233444444332221
Q ss_pred hhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCchhhHHHHHHhHHHHHhhhccccccc
Q 002370 585 LEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLP 664 (930)
Q Consensus 585 ~~~~~~l~eai~~vi~~~p~~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~l~~i~~~l~ 664 (930)
..+..+++++|-++++..+++- .....+++.++.+++.....+. ++|.-. . -..+.++.+++...
T Consensus 562 ~~EneylmKaImRii~i~~~~i------~p~~~~~l~~Lteiv~~v~KNP--s~P~fn-H------YLFEsi~~li~~t~ 626 (960)
T KOG1992|consen 562 KAENEYLMKAIMRIISILQSAI------IPHAPELLRQLTEIVEEVSKNP--SNPQFN-H------YLFESIGLLIRKTC 626 (960)
T ss_pred ccccHHHHHHHHHHHHhCHHhh------hhhhhHHHHHHHHHHHHHhcCC--CCchhH-H------HHHHHHHHHHHHHh
Confidence 2567899999999998876532 2344455566666555432211 122111 0 12344444554332
Q ss_pred ccCCCCCCCCchHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHhhh----hhHhhHHHHHHHHHHhhhhhC
Q 002370 665 VPLPTNPAGDDPIFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQ----HFVTLLPQVLDCLSTNFVSFQ 740 (930)
Q Consensus 665 ~~~~~~~~~~~p~~~~~~~i~~~l~~i~~~~~~~~~~v~e~~c~~~~~~i~~l~~----~~~p~l~~l~~~l~~~~~~~~ 740 (930)
. . .+..+...-..++|++..++.+ .-.+++--+..++.-.+...+. .+.|++|++..- ..+..+.
T Consensus 627 ~---~---~~~~vs~~e~aL~p~fq~Il~e---DI~EfiPYvfQlla~lve~~~~~ip~~~~~l~~~lLsp--~lW~r~g 695 (960)
T KOG1992|consen 627 K---A---NPSAVSSLEEALFPVFQTILSE---DIQEFIPYVFQLLAVLVEHSSGTIPDSYSPLFPPLLSP--NLWKRSG 695 (960)
T ss_pred c---c---CchHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHhcCH--HHHhhcC
Confidence 1 1 1122344557788999998863 1123333444444444444333 445555554432 2344443
Q ss_pred CcchHHHHHHHHHHHhcCCC----CccchHHHHHHHHhhhHHHHHhhcCCCCCCCCchHHHHHHHHHHHHhhhhHHHHhh
Q 002370 741 NHECYIRTASVVIEEFGHKD----EYGPLFVTTFERFSQAASVRALNSSYICDQEPDLVEAYTNFASTFVRTSRKEVLAA 816 (930)
Q Consensus 741 ~~~~~L~l~~~li~~fg~~~----~~~~~l~~l~~~l~~~~~~~~l~~~~~~~~~pD~~~~~f~l~~~~l~~~p~~~~~s 816 (930)
..+..+.++.+++.. |... +..+.+... |+.+..+ +-.=+--|.|+.+++.+.|...+.
T Consensus 696 NipalvrLl~aflk~-g~~~~~~~~~l~~iLGi---------fqkLiaS------ka~Dh~GF~LLn~i~~~~~~~~~~- 758 (960)
T KOG1992|consen 696 NIPALVRLLQAFLKT-GSQIVEAADKLSGILGI---------FQKLIAS------KANDHHGFYLLNTIIESIPPNELA- 758 (960)
T ss_pred CcHHHHHHHHHHHhc-CchhhcccccchhHHHH---------HHHHhcC------cccchhHHHHHHHHHhcCCHhhhh-
Confidence 466666777766643 2211 112222222 2223221 111245678888888887665443
Q ss_pred chhchHHHHHHHHHhhccCc-hhHHHHHHHHHHHHHh
Q 002370 817 SGALLEVSFQKAAICCTAMH-RGAALAAMSYLSCFLE 852 (930)
Q Consensus 817 ~~~~l~~~l~~~l~~l~~~e-~~~~~a~~~fl~~li~ 852 (930)
+.+..++...+.=++... ..=++...-|+..+..
T Consensus 759 --py~k~i~~llf~RlqnskT~kf~k~~~vF~~~~~i 793 (960)
T KOG1992|consen 759 --PYMKQIFGLLFQRLQNSKTEKFVKSFIVFFSLFTI 793 (960)
T ss_pred --HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHH
Confidence 345666555444444332 2224455555544443
No 12
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=99.66 E-value=9e-16 Score=147.71 Aligned_cols=146 Identities=27% Similarity=0.397 Sum_probs=126.3
Q ss_pred CHHHHHHHHHHHHHHHHHhc--ccCchHHHHHHHhhcccCCCchhHHHHHHHhhhhcccccccccccCCCHHHHHHHHHH
Q 002370 104 PPQLLTQICLALSALILRAV--EHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDSQASDCNISSAHRSQYGQE 181 (930)
Q Consensus 104 ~~~v~~kL~~~La~l~~~~~--~W~~~i~~li~~~~~~~~~~~~~~~~L~iL~~l~EE~~~~~~~~~~l~~~~r~~~~~~ 181 (930)
|++|++|+|.+++.++++.+ .||++++++++.+++ ++......|++|+.++||+.+..+. .++..+|..+++.
T Consensus 1 p~~i~~kl~~~l~~i~~~~~P~~Wp~~l~~l~~~~~~---~~~~~~~~L~iL~~l~eEi~~~~~~--~~~~~r~~~l~~~ 75 (148)
T PF08389_consen 1 PPFIRNKLAQVLAEIAKRDWPQQWPDFLEDLLQLLQS---SPQHLELVLRILRILPEEITDFRRS--SLSQERRRELKDA 75 (148)
T ss_dssp -HHHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHHT---THHHHHHHHHHHHHHHHHHHTSHCC--HSHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHChhhCchHHHHHHHHhcc---chhHHHHHHHHHHHHHHHHHhhhch--hhhHHHHHHHHHH
Confidence 68999999999999999985 799999999999987 4567789999999999999863222 2677899999999
Q ss_pred HHhhhhHHHHHHHHHHhhccCCCCCcchhhhHHHHHHHHHHHHHhccccccCcchhcccchHHHHHHhcCCCCcHHHHHH
Q 002370 182 LLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSLQVQSSFDVAIE 261 (930)
Q Consensus 182 l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~c~~sWi~~~~~~~~~~~~i~~~~ll~~l~~~L~~~~~~~~a~~ 261 (930)
+....+.|++++.++++...+. ....+...+|+|+.+|+. |++.+.+.++++++.+|+.|.++++++.|+|
T Consensus 76 l~~~~~~i~~~l~~~l~~~~~~----~~~~~~~~~L~~l~s~i~-----~~~~~~i~~~~~l~~~~~~l~~~~~~~~A~~ 146 (148)
T PF08389_consen 76 LRSNSPDILEILSQILSQSSSE----ANEELVKAALKCLKSWIS-----WIPIELIINSNLLNLIFQLLQSPELREAAAE 146 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHC----CHHHHHHHHHHHHHHHTT-----TS-HHHHHSSSHHHHHHHHTTSCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhccc----cHHHHHHHHHHHHHHHHH-----hCCHHHhccHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999999999886421 125789999999999999 7788888888999999999999999999999
Q ss_pred HH
Q 002370 262 VL 263 (930)
Q Consensus 262 ~l 263 (930)
||
T Consensus 147 cl 148 (148)
T PF08389_consen 147 CL 148 (148)
T ss_dssp HH
T ss_pred hC
Confidence 97
No 13
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.65 E-value=2.5e-09 Score=116.61 Aligned_cols=800 Identities=13% Similarity=0.152 Sum_probs=408.9
Q ss_pred hHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhcChHHHHHHHHhhccCCCCCCccchhHHhhhHHhHHHhccCcCCCCh
Q 002370 4 DLQIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQS 83 (930)
Q Consensus 4 ~~~~~v~~av~~ly~~~d~~~~~~A~~~L~~fq~s~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~ki~~~~~~l~~ 83 (930)
+.-++++..-..||.+.|+..|.+|++-|.+|-.||+.-+-|..||...+. +..+..|+..|-.-+. +-..+|-
T Consensus 2 ~sLaqLe~lCk~LY~s~D~~~R~~AE~~L~e~s~speclskCqlll~~gs~-----pYs~mlAst~L~Klvs-~~t~lpl 75 (1082)
T KOG1410|consen 2 QSLAQLESLCKDLYESTDPTARHRAEKALAELSESPECLSKCQLLLERGSY-----PYSQMLASTCLMKLVS-RKTPLPL 75 (1082)
T ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCC-----chHHHHHHHHHHHHHc-CCCCCcH
Confidence 366789999999999999999999999999999999999999999988654 5888899988865555 4457999
Q ss_pred HHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHhc--------ccCchHHHHHHHhhcccCCCchhHHHHHHHh
Q 002370 84 AAKDALLNALLVAAKRFSS-GPPQLLTQICLALSALILRAV--------EHGKPIEKLFYSLQNLQSQDNGNMAVLEMLT 154 (930)
Q Consensus 84 e~~~~lr~~Ll~~l~~~~~-~~~~v~~kL~~~La~l~~~~~--------~W~~~i~~li~~~~~~~~~~~~~~~~L~iL~ 154 (930)
+++..||+.+++++..... -+++|...||+.+|.+-+..+ ...++|.++...++.+ +.+++.+.+.+|+
T Consensus 76 ~qrldir~Yilnylat~~Pk~~~fvi~sLiQl~arlTK~gW~d~~k~~y~FRd~v~~~~kfl~~~--~ve~~~igv~iLs 153 (1082)
T KOG1410|consen 76 EQRLDIRNYILNYLATGAPKLAPFVIQSLIQLFARLTKLGWFDQQKDEYVFRDPVDDVTKFLQMD--NVEHCIIGVQILS 153 (1082)
T ss_pred HHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHhccccccccccchhhhhHHHHHHHhccC--chHHHHHHHHHHH
Confidence 9999999999999986322 346899999999999887743 1346667777666653 4678889999999
Q ss_pred hhhcccccccccccCCCHHHHHHHHHHHHhh-hhHHHHHHHHHHhhccCCCCCcc-----hhhhHHHHHHHHH-HHHHhc
Q 002370 155 VLPEEVIDSQASDCNISSAHRSQYGQELLSH-TPMVVEFLMQQSDKRFDGGVPVQ-----LHDRNRKILRCLL-SWVRAG 227 (930)
Q Consensus 155 ~l~EE~~~~~~~~~~l~~~~r~~~~~~l~~~-~~~v~~~l~~~l~~~~~~~~~~~-----~~~~~~~~l~c~~-sWi~~~ 227 (930)
.|..|....... .+..+++++...++.. .-+|+.+-.+.+....+-+++.. ...+...+++|+. -+|.-.
T Consensus 154 qLvqemN~~~~~---~p~tkHRkias~FRD~sL~~vf~laln~L~~~~~~nlnd~~q~~L~~~vL~L~l~Cl~FDfiGss 230 (1082)
T KOG1410|consen 154 QLVQEMNQADGM---DPSTKHRKIASSFRDDSLFDVFSLALNLLKDNVDLNLNDRAQLGLLMQVLKLNLNCLNFDFIGSS 230 (1082)
T ss_pred HHHHHhhCCCCC---CcchHHHHHHhhhhhhHHHHHHHHHHHHHHHhcccCcccHhHhhHHHHHHHHHhhhccccccccc
Confidence 999998644332 2444555555555553 35566555555544332112111 1124455667765 233211
Q ss_pred --------cccccCcc---hhcccchHHHHHHhcCC--CCcHHHHHHHHHHHHhccCC---------hhHHHHhhhhhhH
Q 002370 228 --------CFTEISQG---SLAAHPLLNFVFNSLQV--QSSFDVAIEVLVELVGRHEG---------LPQALLCRVPFLK 285 (930)
Q Consensus 228 --------~~~~~~~~---~i~~~~ll~~l~~~L~~--~~~~~~a~~~l~ei~~~~~~---------~~~~l~~~~~~l~ 285 (930)
|...||.+ .+..+..+++.|+.... |++.+.|++|++.+.+-.+. |.+.++..+..+
T Consensus 231 ~DEssed~ctVQIPTsWRs~f~d~stlqlfFdly~slp~~~S~~alsclvqlASvRRsLFN~aeRa~yl~~Lv~Gvk~i- 309 (1082)
T KOG1410|consen 231 TDESSEDLCTVQIPTSWRSSFLDSSTLQLFFDLYHSLPPELSELALSCLVQLASVRRSLFNGAERAKYLQHLVEGVKRI- 309 (1082)
T ss_pred cccccccccceecCcHHHHHhcCchHHHHHHHHhccCCchhhHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH-
Confidence 11122221 12345678888888774 68889999999987764321 444454443322
Q ss_pred HhhhchhhccCcHhHHhhHHHHHHHHHHhhh-HHHH--hcChhHHHHHHHHHhcc--cCCCCCch----hhhhcHHHHHH
Q 002370 286 ELLLLPALTDGDEKVIGGLACLMSEIGQAAP-SLIV--EASPEALALADALLSCV--AFPSEDWE----IADSTLQFWST 356 (930)
Q Consensus 286 ~~~~~~~~~~~d~d~~~~l~~l~~~~~e~~~-~~l~--~~~~~~~~ll~~ll~~~--~~p~~d~~----v~~~~~~fW~~ 356 (930)
+.+ .-.-.|.+..+.+||++.-+-.+|- .-++ ++=++. +.++-.++ +.. .++ -.-..+.+|..
T Consensus 310 --l~n-p~~LsD~~nyHeFCRllaRlktNYQL~ELv~v~~Y~e~---irLiAeFTv~SLq--~wefa~nSvyyLlt~WqR 381 (1082)
T KOG1410|consen 310 --LEN-PQGLSDPANYHEFCRLLARLKTNYQLGELVKVECYPEV---IRLIAEFTVTSLQ--HWEFAPNSVYYLLTLWQR 381 (1082)
T ss_pred --HhC-CcCCCCcchHHHHHHHHHHHHhhhhhHhhhccCCcHHH---HHHHHHHHHHHHH--hhhcccchhHHHHHHHHH
Confidence 111 1122456666777777765544331 1111 111122 22222221 110 111 12356789998
Q ss_pred HHHHhhccchhhhhhhhhhhhhcHHHH-HHHHHHHHHHhc--cCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHhcCc
Q 002370 357 LASYILGLDASIAKNKKHVEDMFFSVF-SALLDALLLRAQ--VDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRS 433 (930)
Q Consensus 357 l~~~l~~~~~~~~~~~~~~~~~~~~~~-~~Ll~~l~~k~~--~p~~~~~~~~~~d~~d~f~~~R~~~~d~l~~~~~~l~~ 433 (930)
+...+-=... ..+...+.|.|-. ...+..=+...+ .+++. |...|+.+.. .+.-|.+-.+|..-=.
T Consensus 382 mvaSVPyvk~----~~phlLd~y~PeIt~afi~SRl~sV~~ivrd~~---d~PLdd~~~~----~q~le~l~~icRceYE 450 (1082)
T KOG1410|consen 382 MVASVPYVKN----TEPHLLDTYCPEITKAFITSRLQSVEIIVRDGL---DDPLDDTGAV----QQQLEQLATICRCEYE 450 (1082)
T ss_pred HHhcCCcccC----CChHHHhhhcHHHHHHHHHHHhhhhheecccCC---CCcchhhHHH----HHHHHHhhhhhhhhHh
Confidence 7654321111 1122333443321 111111122222 22221 1111211111 1112333333222100
Q ss_pred h--HHHHHHHHh-------hhcC-CCCCCCchhhhHH----HHHHHhhhhc-cc---cCCC-ccc---hhHHHHHHHH--
Q 002370 434 A--TFIQKVFFG-------SWGS-ANVPIPWKEVETK----LFALNVVSEV-VL---QEGQ-AFD---FSVIMQLVAV-- 489 (930)
Q Consensus 434 ~--~~l~~~~~~-------~~~~-~~~~~~W~~~Ea~----L~~l~~iae~-~~---~~~~-~~~---l~~i~~~l~~-- 489 (930)
. ..+.+.|+. ++.. ...+.+..-.|+- +|.++++..+ +. .++. +.+ ...+++++..
T Consensus 451 kTc~llvq~fdq~aqsyqe~~~~~s~~~~d~ai~EgrL~Wlv~lvgtvV~gk~t~~Std~~d~mDgEL~arvlql~nlmd 530 (1082)
T KOG1410|consen 451 KTCALLVQLFDQNAQSYQELLQNGSANDADIAIQEGRLVWLVYLVGTVVGGKTTATSTDEHDAMDGELSARVLQLVNLMD 530 (1082)
T ss_pred hHHHHHHHHHhhhHHHHHHHhcccCCCchhHHHHhhhhhhhHHHhHHHhcceecccccchhhhhhhHHHHHHHHHHHhhh
Confidence 1 134444433 2221 1112223233332 4666655322 21 1111 000 1234444432
Q ss_pred --hccCchhhhhh-H----HHHHHHHH-------HHHHHhhHHHHHh--chhchHHHHHHHHHhcc----ccchhHHHHH
Q 002370 490 --LSASRSEELKG-F----MHIVYRSL-------ADVIGSYSKWISA--FQTNARPLLLFLAAGIS----EAVSSNACAS 549 (930)
Q Consensus 490 --l~~~~~~~~~~-~----~~v~~~t~-------~~~ig~y~~wl~~--~p~~L~~vl~~l~~~l~----~p~v~~~Aa~ 549 (930)
+|.....+... + ...|.+-+ ..+-.+.++-+.- |...|..++..++..+. ...+.+..-.
T Consensus 531 sr~~~~~n~rle~ail~f~eqFRk~YvgDQ~~rsSkvY~rl~e~Lgi~de~~~L~viv~KI~TNLK~w~~~e~vi~~tLs 610 (1082)
T KOG1410|consen 531 SRLPLKGNERLELAILHFLEQFRKAYVGDQIQRSSKVYARLSEVLGITDESDVLGVIVGKILTNLKYWGRNEPVISLTLS 610 (1082)
T ss_pred cccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhcccccCCchHHHHHHH
Confidence 22221111000 0 00000000 1233333333332 34566777777766654 2235555555
Q ss_pred HHHHHHHHhh--cccCCCccHHHHH-HH----HHHHH-hcC-CChhhHHHHHHHHHHHHcc-CCchHHHHHHHHHHHHHH
Q 002370 550 ALRKICEDAS--ALIDEPSNLEILM-WI----GEALE-KRH-LPLEDEEEVVGAISLILGS-VSNKELKNNLLARLLSSS 619 (930)
Q Consensus 550 al~~lc~~c~--~~l~~p~~~~~l~-~~----~~~l~-~~~-l~~~~~~~l~eai~~vi~~-~p~~~~~~~~l~~ll~p~ 619 (930)
.|..+.-.-. +.+..-.....++ +. ...+. +.. -+...|...|+++|.++-. ..+++ ..+++++.|+
T Consensus 611 lf~dLs~GY~~~kkL~kl~~VqfmlnNHT~ehF~FLg~~~~~~~~r~RTTFY~al~rLl~~d~sede---~~fe~fm~PL 687 (1082)
T KOG1410|consen 611 LFNDLSLGYSAVKKLVKLDAVQFMLNNHTSEHFPFLGINIDLQDMRCRTTFYTALTRLLMVDLSEDE---DMFERFMLPL 687 (1082)
T ss_pred HHHHHhhhHHHHHHHhcchhhhhHhcccchhhCcccccCccchhhhhHhHHHHHHHHHHhhcccccH---HHHHHHHHHH
Confidence 5555553321 1111000111111 10 00110 111 1345688999999999855 33334 3478999999
Q ss_pred HHHHHhhhhccCCCCCCCCchhhHHHHHHhHHHHHhhhcccccccccCCCCCCCCchHHHHH----HHHHHHHHHHHHhh
Q 002370 620 YEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALL----RVFWPMLEKLFRSE 695 (930)
Q Consensus 620 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~l~~i~~~l~~~~~~~~~~~~p~~~~~----~~i~~~l~~i~~~~ 695 (930)
.+..+.+++..+++-.+. ++ ++ +.+..|..=.|++. + .......+.-.| -..+|++...++ +
T Consensus 688 t~~fe~v~~~~~nn~f~e--e~----vK---~~liGL~RDLRGiA--~--A~~tktsy~~LFdWmYP~~mpllq~~Ve-~ 753 (1082)
T KOG1410|consen 688 TDAFEGVLQVFQNNCFEE--EQ----VK---RILIGLCRDLRGIA--F--ASNTKTSYQMLFDWMYPEYMPLLQRAVE-K 753 (1082)
T ss_pred HHHHHHHHHHhccccccH--HH----HH---HHHHHHHHHhhhhh--h--hhccchHHHHHHHHhhhhHHHHHHHHHH-h
Confidence 999998887654432221 11 22 22222222223221 1 111112233333 344677777777 6
Q ss_pred hccchHHHHHHHHHHHHHHHHhhh----hh----HhhHHHHHHHHHHhhhh------------------hCCcchHHHHH
Q 002370 696 HMENGNLSTAACRALSLAIQSSGQ----HF----VTLLPQVLDCLSTNFVS------------------FQNHECYIRTA 749 (930)
Q Consensus 696 ~~~~~~v~e~~c~~~~~~i~~l~~----~~----~p~l~~l~~~l~~~~~~------------------~~~~~~~L~l~ 749 (930)
|.+.+++..-+.+++...+..-.. ++ +-++-.=...++..|.. ..-..||.-+-
T Consensus 754 W~~~p~vtTPiLklmaE~v~NrsQRL~Fd~SSpngiLLFrEtSKmv~~YG~riL~Lp~vskdqiY~~kyKgI~v~~siLk 833 (1082)
T KOG1410|consen 754 WYGCPDVTTPILKLMAELVQNRSQRLKFDVSSPNGILLFRETSKMVSIYGNRILQLPEVSKDQIYAEKYKGISVCFSILK 833 (1082)
T ss_pred cCCCCccccHHHHHHHHHHhhhHhheecccCCCceeEEehhhhHHHHHHhhHhhcccCcchhhhHHHHhcCceehHHHHH
Confidence 999988887777766655443100 00 00000001111111110 00122333333
Q ss_pred HHHHHHh---cCCCCcc-chHHHHHHHHhhhHHHHHhhc--CCCCCCCCchHHHHHHHHHHHHhhhhHHHHhhchhchHH
Q 002370 750 SVVIEEF---GHKDEYG-PLFVTTFERFSQAASVRALNS--SYICDQEPDLVEAYTNFASTFVRTSRKEVLAASGALLEV 823 (930)
Q Consensus 750 ~~li~~f---g~~~~~~-~~l~~l~~~l~~~~~~~~l~~--~~~~~~~pD~~~~~f~l~~~~l~~~p~~~~~s~~~~l~~ 823 (930)
+.+...| |--.-|. ..+.+.+..+ +.++.+ -.++-+++.+.++||.|+..+.+.+-..+...+++.+..
T Consensus 834 ~AL~GnYv~FGVFrLYGD~~l~daL~~f-----vKm~lsIp~sD~l~Y~Klsqsyy~llE~l~qdhm~Fi~nL~~~vfm~ 908 (1082)
T KOG1410|consen 834 NALSGNYVNFGVFRLYGDSALDDALQTF-----VKMLLSIPHSDLLSYRKLSQSYYNLLEVLTQDHMPFITNLEPDVFMY 908 (1082)
T ss_pred HHhhcCccccceeeeeCchHHHHHHHHH-----HHHHhcCCHHHHHhHHHHHHHHhhHHHHHHhccchhhhcCcHHHHHH
Confidence 4444322 1100000 1233332221 222222 135568899999999999999998877777665567777
Q ss_pred HHHHHHHhhccCchhHHHHHHHHHHHHHhhhhh
Q 002370 824 SFQKAAICCTAMHRGAALAAMSYLSCFLEECLA 856 (930)
Q Consensus 824 ~l~~~l~~l~~~e~~~~~a~~~fl~~li~~~~~ 856 (930)
++..+-.+++.-+.-+..++|.-+..+++.-..
T Consensus 909 ll~Si~sGLt~lDt~v~ssccsslD~i~tYlfk 941 (1082)
T KOG1410|consen 909 LLRSISSGLTSLDTIVSSSCCSSLDTIVTYLFK 941 (1082)
T ss_pred HHHHHHhccchhhHHHHhHHHHHHHHHHHHHHH
Confidence 777777888888888888888888888776543
No 14
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=99.50 E-value=1.1e-08 Score=115.99 Aligned_cols=144 Identities=15% Similarity=0.140 Sum_probs=107.2
Q ss_pred HHHHHHHHhccCCChHHHHHHHHHHHHhhcChHHHHHHHHhhccCCCCCCccchhHHhhhHHhHHHhccCcCCC------
Q 002370 8 KVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYL------ 81 (930)
Q Consensus 8 ~v~~av~~ly~~~d~~~~~~A~~~L~~fq~s~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~ki~~~~~~l------ 81 (930)
.+.+.+.... ++|+..|.+|+..|.++..+++--.....+..+.. .+...|.+|+..|+.-|.++|...
T Consensus 5 ~ii~~L~~~l-s~d~~vr~~AE~~l~qle~~~~f~~aL~~va~~~~----~sl~lRQ~A~v~L~~yie~hW~~~~E~fr~ 79 (1005)
T KOG2274|consen 5 AIIELLSGSL-SADQNVRSQAETQLKQLELTEGFGVALAEVAANKD----ASLPLRQIALVLLKRYIEKHWSPNFEAFRY 79 (1005)
T ss_pred HHHHHHHhhc-CCChhHHHHHHHHHhccccchHHHHHHHHHHhCcc----cCchHHHHHHHHHHHHHHHhCCChHhhccC
Confidence 4444454443 67899999999999999998774333334443322 357899999999999999999865
Q ss_pred ----ChHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh-c-ccCchHHHHHHHhhcccCCCchhHHHHHHHhh
Q 002370 82 ----QSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRA-V-EHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTV 155 (930)
Q Consensus 82 ----~~e~~~~lr~~Ll~~l~~~~~~~~~v~~kL~~~La~l~~~~-~-~W~~~i~~li~~~~~~~~~~~~~~~~L~iL~~ 155 (930)
.++.+.-||+.|++.+. ..++.+++-.+.+++.++--. + .||+.++-+..+++++ +.++....+++|..
T Consensus 80 ~~~~~e~~K~~IRe~Ll~~l~---~sn~ki~~~vay~is~Ia~~D~Pd~WpElv~~i~~~l~~~--n~n~i~~am~vL~e 154 (1005)
T KOG2274|consen 80 PLIVSEEVKALIREQLLNLLD---DSNSKIRSAVAYAISSIAAVDYPDEWPELVPFILKLLSSG--NENSIHGAMRVLAE 154 (1005)
T ss_pred CCcccHHHHHHHHHHHHhhhh---ccccccchHHHHHHHHHHhccCchhhHHHHHHHHHHHhcc--chhhhhhHHHHHHH
Confidence 34667888888888776 456778888888888887554 3 6999999999988863 55666778888888
Q ss_pred hhcccc
Q 002370 156 LPEEVI 161 (930)
Q Consensus 156 l~EE~~ 161 (930)
+..|+.
T Consensus 155 l~~ev~ 160 (1005)
T KOG2274|consen 155 LSDEVD 160 (1005)
T ss_pred HHHHHH
Confidence 777763
No 15
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=2.3e-06 Score=95.55 Aligned_cols=632 Identities=13% Similarity=0.051 Sum_probs=295.8
Q ss_pred CCChHHHHHHHHHHHHhhcChHHHHHHHHhhccCCCCCCccchhHHhhhHHhHHHhccCcCCC-----ChHHHHHHHHHH
Q 002370 19 DTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYL-----QSAAKDALLNAL 93 (930)
Q Consensus 19 ~~d~~~~~~A~~~L~~fq~s~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~ki~~~~~~l-----~~e~~~~lr~~L 93 (930)
.+|+..|+.|++.|.+++|.|.-...|..++..+. .+.++|.-||.-+++||.+.|... +.+.+...|..|
T Consensus 14 dada~~rt~AE~~Lk~leKqPgFv~all~i~s~de----~~lnvklsAaIYfKNkI~rsWss~~d~~i~~Dek~e~K~~l 89 (970)
T COG5656 14 DADAGKRTIAEAMLKDLEKQPGFVMALLHICSKDE----GDLNVKLSAAIYFKNKIIRSWSSKRDDGIKADEKSEAKKYL 89 (970)
T ss_pred ccCcchhhHHHHHHHHhhcCCcHHHHHHHHHhhcc----CCchhhHHHHHHHhhhhhhhhhhcccCCCCCcccHHHHHHH
Confidence 56788999999999999999999999999998764 357999999999999999999984 345566666666
Q ss_pred HHHHHHh-cCCCHHHHHHHHHHHHHHHHHhc---ccCchHHHHHHHhhcccCCCchhHHHHHHHhhhhcccccccccccC
Q 002370 94 LVAAKRF-SSGPPQLLTQICLALSALILRAV---EHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDSQASDCN 169 (930)
Q Consensus 94 l~~l~~~-~~~~~~v~~kL~~~La~l~~~~~---~W~~~i~~li~~~~~~~~~~~~~~~~L~iL~~l~EE~~~~~~~~~~ 169 (930)
++.+... ..+|...|+.+..++..++-... -|+ +.+.....+.++ +...+...|..+..+ .+.-+.+
T Consensus 90 ienil~v~l~sp~~tr~~l~ail~~I~seD~ps~~wg-l~p~~~nll~s~--ea~~vy~gLlcl~el----fkayRwk-- 160 (970)
T COG5656 90 IENILDVFLYSPEVTRTALNAILVNIFSEDKPSDLWG-LFPKAANLLRSS--EANHVYTGLLCLEEL----FKAYRWK-- 160 (970)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHhccccCchhhcc-cchHHHHhhccc--chhHHHHHHHHHHHH----HHHHhhh--
Confidence 6665542 24666666677655555544332 277 667777767653 233444455544333 2222222
Q ss_pred CCHHHHHHHHHHHHh-hhhHHHHHHHHHHhhccCCCCCcchhhhHHHHHHHHHHHHHhccccccCcchhcccch---HHH
Q 002370 170 ISSAHRSQYGQELLS-HTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPL---LNF 245 (930)
Q Consensus 170 l~~~~r~~~~~~l~~-~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~c~~sWi~~~~~~~~~~~~i~~~~l---l~~ 245 (930)
.. .+++....+.. -.|.+.++-......+ +. ...++....|+.+.+-+-+ ++|........+ +++
T Consensus 161 ~n--deq~di~~li~alfpile~~g~nl~s~~-ny----~s~e~l~LILk~fKsvcy~----~LP~~lsa~e~f~sw~ql 229 (970)
T COG5656 161 YN--DEQVDILMLITALFPILEKVGGNLESQG-NY----GSVETLMLILKSFKSVCYY----SLPDFLSAIETFSSWFQL 229 (970)
T ss_pred cc--chHhhHHHHHHHhhHHHHHHhhccccCC-ch----hHHHHHHHHHHHHHHHHHh----hCCHHHccchhhHHHHHH
Confidence 22 22222233322 3344444333322211 11 2346777888888887776 355433222222 233
Q ss_pred HHHhcCCCCcHHHHHHHHHHHHhccC---ChhHHHHhhhhhhHHhhhchhhccCcHhHHhhHHHHHHHHHHhhhHHHHhc
Q 002370 246 VFNSLQVQSSFDVAIEVLVELVGRHE---GLPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMSEIGQAAPSLIVEA 322 (930)
Q Consensus 246 l~~~L~~~~~~~~a~~~l~ei~~~~~---~~~~~l~~~~~~l~~~~~~~~~~~~d~d~~~~l~~l~~~~~e~~~~~l~~~ 322 (930)
.+..++.|- -+..+..=-| ++... +..+.-+..+..+.++|...........+...++..+..+.+.+.+.+..-
T Consensus 230 ~l~i~qkpl-p~evlsldpe-vRs~~~wvKckKWa~ynLyR~fqRy~k~s~~~~y~~f~~~f~t~vp~il~tffkqie~w 307 (970)
T COG5656 230 SLRILQKPL-PNEVLSLDPE-VRSLSKWVKCKKWAAYNLYRSFQRYIKKSYKKSYLSFYITFMTRVPMILATFFKQIEEW 307 (970)
T ss_pred HHHHHcCCC-CHHHhccChh-hccccchhhhhHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333220 0000000000 00000 011222222222222221101111111122233333333444444433321
Q ss_pred ChhHHHHHHHHHhcccCCCCCchhhhhcHHHHHHHHHHhhccchhhhhhhhhhhhhcHHHHHHHHHHHHHHhccCCCCCC
Q 002370 323 SPEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFN 402 (930)
Q Consensus 323 ~~~~~~ll~~ll~~~~~p~~d~~v~~~~~~fW~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Ll~~l~~k~~~p~~~~~ 402 (930)
.+ | ..=.+...+-|-..|.+... +. .+.++...|.+.=++...+=-+-.+.++..
T Consensus 308 gq----------------g-qLWlsd~~LYfi~~Fve~cv--~~------d~tw~l~ePhlq~ii~~vIfPllc~see~e 362 (970)
T COG5656 308 GQ----------------G-QLWLSDIELYFIDFFVELCV--DA------DQTWRLMEPHLQYIISGVIFPLLCLSEEEE 362 (970)
T ss_pred hc----------------C-CeecchHHHHHHHHHHHHHh--hh------HhhHhhhccHHHHHHHhhhhhhcCCChhhH
Confidence 10 0 01122223333222322211 10 134455666665555444333222333211
Q ss_pred CCCCCCCCchHHHH---------HHHHH--HHHHHHHHhcCchHHHHHHHH----hhhcCCCCC---CCchhhhHHHHHH
Q 002370 403 DDGMVDLPDGLVQF---------RMNLV--ELLVDICQLLRSATFIQKVFF----GSWGSANVP---IPWKEVETKLFAL 464 (930)
Q Consensus 403 ~~~~~d~~d~f~~~---------R~~~~--d~l~~~~~~l~~~~~l~~~~~----~~~~~~~~~---~~W~~~Ea~L~~l 464 (930)
+.|+. |.++|-+- |-+++ +.+..+ ..=+++..++-++. .+..+..++ .+-++.|.|++.+
T Consensus 363 ElfEn-Dp~eyirry~df~d~g~spdlaal~fl~~~-~sKrke~TfqgiLsf~~sil~qsaa~psn~dnarq~egalr~l 440 (970)
T COG5656 363 ELFEN-DPDEYIRRYYDFFDNGLSPDLAALFFLIIS-KSKRKEETFQGILSFLLSILGQSAATPSNIDNARQAEGALRLL 440 (970)
T ss_pred HHHhc-CHHHHHHHhcchhcCCCChhHHHHHHHHHH-hcccchhhhhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHH
Confidence 12321 22333211 11222 111111 11122222333222 221111111 3578899999999
Q ss_pred HhhhhccccCCCccchhHHHH-HHHH--hc--cCchhhhhhHHHHHHHHHHHHHHhhHHHHHhchhchHHHHHHHHHhcc
Q 002370 465 NVVSEVVLQEGQAFDFSVIMQ-LVAV--LS--ASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGIS 539 (930)
Q Consensus 465 ~~iae~~~~~~~~~~l~~i~~-~l~~--l~--~~~~~~~~~~~~v~~~t~~~~ig~y~~wl~~~p~~L~~vl~~l~~~l~ 539 (930)
.+|..-+++ ++. +..+++ ++.. +| ..+. ++ ++.++ |+++++|+.=++. +..+..+.+....++.
T Consensus 441 asi~s~itk-~sp--~an~me~fiv~hv~P~f~s~y----gf--L~Sra-ce~is~~eeDfkd-~~ill~aye~t~ncl~ 509 (970)
T COG5656 441 ASIKSFITK-MSP--AANVMEYFIVNHVIPAFRSNY----GF--LKSRA-CEFISTIEEDFKD-NGILLEAYENTHNCLK 509 (970)
T ss_pred HHHHHHhcc-Cch--HHHHHHHHHHHHhhHhhcCcc----cc--hHHHH-HHHHHHHHHhccc-chHHHHHHHHHHHHHh
Confidence 999885553 332 344555 2222 22 2222 22 34545 6999999765443 4445556666666666
Q ss_pred ccc--hhHHHHHHHHHHHHHhhcccCCCccHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHccCCchHHHHHHHHHHHH
Q 002370 540 EAV--SSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLS 617 (930)
Q Consensus 540 ~p~--v~~~Aa~al~~lc~~c~~~l~~p~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~~l~~ll~ 617 (930)
+.. |+-.||.|+.-|...-..+.....+.+..++-.-.+. ...+.+....++|++..=- +. + ..+.-..|.+
T Consensus 510 nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsLS-n~feiD~LS~vMe~fVe~f---se-E-Lspfa~eLa~ 583 (970)
T COG5656 510 NNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSLS-NTFEIDPLSMVMESFVEYF---SE-E-LSPFAPELAG 583 (970)
T ss_pred cCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHhc-ccccchHHHHHHHHHHHHh---HH-h-hchhHHHHHH
Confidence 522 7889999999887554332211124443333222222 2234444555555543221 11 1 2222233444
Q ss_pred HHHHHHHhhhh----ccCCCCCCCCchhhHHHHHHhHHHHHhhhcccccccccCCCCCCCCchHHHHHHHHHHHHHHHHH
Q 002370 618 SSYEAIGKLID----GDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFR 693 (930)
Q Consensus 618 p~~~~l~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~l~~l~~i~~~l~~~~~~~~~~~~p~~~~~~~i~~~l~~i~~ 693 (930)
-+.++.-++.. +..+.....+ + .++ .+...+..+.+++-++.. .+......-+...|+++-++.
T Consensus 584 ~Lv~qFlkiaq~l~ens~d~~s~vD--D--Kqm-aasGiL~T~~smiLSlen-------~p~vLk~le~slypvi~Filk 651 (970)
T COG5656 584 SLVRQFLKIAQSLLENSSDTSSVVD--D--KQM-AASGILRTIESMILSLEN-------RPLVLKYLEVSLYPVISFILK 651 (970)
T ss_pred HHHHHHHHHHHHHHcCCcccccccc--H--HHH-HHHHHHHHHHHHHHhccc-------chHHHHHHHHHHHHHHHHHHh
Confidence 44443333332 2211111111 1 111 234455555555444432 111123344667899998886
Q ss_pred hhhccchHHHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhh
Q 002370 694 SEHMENGNLSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTNF 736 (930)
Q Consensus 694 ~~~~~~~~v~e~~c~~~~~~i~~l~~~~~p~l~~l~~~l~~~~ 736 (930)
+ +-.++...+|+++....- ...+..|..+.+.+.+...-
T Consensus 652 n---~i~dfy~Ea~dildg~tf-~skeI~pimwgi~Ell~~~l 690 (970)
T COG5656 652 N---EISDFYQEALDILDGYTF-MSKEIEPIMWGIFELLLNLL 690 (970)
T ss_pred h---hHHHHHHHHHHHHhhhhH-HHHHhhhhhhHHHHHHHhcc
Confidence 3 334566777777654322 22344577777888776543
No 16
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=99.05 E-value=2.6e-08 Score=107.23 Aligned_cols=175 Identities=10% Similarity=0.119 Sum_probs=144.1
Q ss_pred hhHHHHHHHHHHhhhhhCC---cchHHHHHHHHHHHhcCCCCccchHHHHHHHHhhhHHHHHhhcCCCCCCCCchHHHHH
Q 002370 723 TLLPQVLDCLSTNFVSFQN---HECYIRTASVVIEEFGHKDEYGPLFVTTFERFSQAASVRALNSSYICDQEPDLVEAYT 799 (930)
Q Consensus 723 p~l~~l~~~l~~~~~~~~~---~~~~L~l~~~li~~fg~~~~~~~~l~~l~~~l~~~~~~~~l~~~~~~~~~pD~~~~~f 799 (930)
.++|++++.++.+|..+.| .+.+|++.+.+|.+.|+. ..+.+..+++.+-++| +.++. .++.++||++..||
T Consensus 67 ~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~--~~~~v~~I~~~vf~~T-l~MI~--~d~~~yPe~r~~ff 141 (319)
T PF08767_consen 67 NFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGEL--IQPQVPQILEAVFECT-LPMIN--KDFEEYPEHRVNFF 141 (319)
T ss_dssp HTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGG--CCCCHHHHHHHHHHHH-HHHHS--STSSSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHh--hhhhHHHHHHHHHHHH-HHHHH--hhhhhChHHHHHHH
Confidence 5789999999999986543 577999999999999973 3456666677777787 77776 47889999999999
Q ss_pred HHHHHHHhhhhHHHHhhchhchHHHHHHHHHhhccCchhHHHHHHHHHHHHHhhhhhhccCCCCCCCCccHHHHHHHHHH
Q 002370 800 NFASTFVRTSRKEVLAASGALLEVSFQKAAICCTAMHRGAALAAMSYLSCFLEECLASLLGYTTSIPEGSFNAMAIQVIS 879 (930)
Q Consensus 800 ~l~~~~l~~~p~~~~~s~~~~l~~~l~~~l~~l~~~e~~~~~a~~~fl~~li~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 879 (930)
.|+..+.++|+..++..+++.+..++++.++|++++++++...+++.+..+++..... ..+..++...
T Consensus 142 ~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~~------------~~~~~~~F~~ 209 (319)
T PF08767_consen 142 KLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSKT------------NPEFANQFYQ 209 (319)
T ss_dssp HHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH-------------SHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhc------------CHHHHHHHHH
Confidence 9999999999999998877889999999999999999999999999999999886641 1355677778
Q ss_pred hhhHHHHHHHHHHhcccccccchhhhhHHHHHHHh
Q 002370 880 HSGEGLVSNVVYALLGVSAMSRIHSGGSCFQKKRS 914 (930)
Q Consensus 880 ~~G~~lv~~ll~~~~g~~prs~~~~~~~~L~~l~~ 914 (930)
.+...++..++..+.-..=++..+..+.+|..|.+
T Consensus 210 ~y~~~il~~if~vltD~~Hk~gf~~q~~iL~~Lf~ 244 (319)
T PF08767_consen 210 QYYLDILQDIFSVLTDSDHKSGFKLQSQILSNLFR 244 (319)
T ss_dssp HHHHHHHHHHHHHHHSTT-GGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHH
Confidence 88888888888888777777888888888888875
No 17
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.91 E-value=0.00033 Score=79.45 Aligned_cols=169 Identities=17% Similarity=0.135 Sum_probs=119.1
Q ss_pred HHHHHhccCCChHHHHHHHHHHHHhhcChHHHHHHHHhhccCCCCCCccchhHHhhhHHhHHHhccCcC-----CCChHH
Q 002370 11 QAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGY-----YLQSAA 85 (930)
Q Consensus 11 ~av~~ly~~~d~~~~~~A~~~L~~fq~s~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~ki~~~~~-----~l~~e~ 85 (930)
+.+++. .++|+..++.|++.|++..+.|........+..+. +.+.++|..|+.-+|+-|.+.|. .+|+|.
T Consensus 4 q~Lq~A-ts~d~~v~k~AE~qLr~WEtqPGF~~~L~sI~l~~----t~dv~vRWmAviyfKNgIdryWR~~~~~sl~~EE 78 (978)
T KOG1993|consen 4 QVLQQA-TSQDHIVVKPAEAQLRQWETQPGFFSKLYSIFLSK----TNDVSVRWMAVIYFKNGIDRYWRRNTKMSLPPEE 78 (978)
T ss_pred HHHHHh-cCCCcccchhHHHHHHhhccCCcHHHHHHHHHhcc----ccceeeeeehhhhHhcchhHHhhcCCcccCCHHH
Confidence 444443 27788899999999999999999988888877654 35689999999999999998876 589999
Q ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh-c-ccCchHHHHHHHhhcccCCCc--hhHHHHHHHhhhhcccc
Q 002370 86 KDALLNALLVAAKRFSSGPPQLLTQICLALSALILRA-V-EHGKPIEKLFYSLQNLQSQDN--GNMAVLEMLTVLPEEVI 161 (930)
Q Consensus 86 ~~~lr~~Ll~~l~~~~~~~~~v~~kL~~~La~l~~~~-~-~W~~~i~~li~~~~~~~~~~~--~~~~~L~iL~~l~EE~~ 161 (930)
+..||..|+.++. +.+.-+..|.++.+|.+|.-. + .||+.+++++..+++..+..+ ...-+|..|..+--++.
T Consensus 79 K~~iR~~Ll~~~~---E~~nQlaiQ~AvlisrIARlDyPreWP~Lf~~L~~~Lq~~~~~gD~~~~~RiLi~l~~ilK~La 155 (978)
T KOG1993|consen 79 KDFIRCNLLLHSD---EENNQLAIQNAVLISRIARLDYPREWPDLFPDLLGQLQSSLGTGDSLVQHRILITLHHILKALA 155 (978)
T ss_pred HHHHHHHHHHhcc---cchhHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHH
Confidence 9999999998765 455667788888888888544 4 799999999999987432221 11222222222222232
Q ss_pred cccccccCCCHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 002370 162 DSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQS 197 (930)
Q Consensus 162 ~~~~~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~l 197 (930)
. .|-.+-++.+.+-++.|+.++..++
T Consensus 156 t----------~RL~a~rk~F~el~~~I~~~l~~~l 181 (978)
T KOG1993|consen 156 T----------KRLLADRKAFYELAPEILTILAPIL 181 (978)
T ss_pred H----------hHHhhhhHHHHHHhHHHHHHHHHHH
Confidence 2 2222334455666777777665443
No 18
>PF03810 IBN_N: Importin-beta N-terminal domain; InterPro: IPR001494 Karyopherins are a group of proteins involved in transporting molecules through the pores of the nuclear envelope. Karyopherins, which may act as importins or exportins, are part of the Importin-beta super-family, which all share a similar three-dimensional structure. Members of the importin-beta (karyopherin-beta) family can bind and transport cargo by themselves, or can form heterodimers with importin-alpha. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Importin-beta is a helicoidal molecule constructed from 19 HEAT repeats. Many nuclear pore proteins contain FG sequence repeats that can bind to HEAT repeats within importins [, ], which is important for importin-beta mediated transport. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. As a result, the N-terminal auto-inhibitory region on importin-alpha is free to loop back and bind to the major NLS-binding site, causing the cargo to be released []. There are additional release factors as well. This entry represents the N-terminal domain of karyopherins that is important for the binding of the Ran protein []. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport; PDB: 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 1IBR_D 1QGR_A 3LWW_A 1F59_A 2Q5D_A ....
Probab=98.74 E-value=2.2e-08 Score=83.85 Aligned_cols=67 Identities=33% Similarity=0.375 Sum_probs=62.0
Q ss_pred HHHHHHHhhcC-hHHHHHHHHhhccCCCCCCccchhHHhhhHHhHHHhccCcC--------CCChHHHHHHHHHHHHHHH
Q 002370 28 ANQWLVQFQQT-DAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGY--------YLQSAAKDALLNALLVAAK 98 (930)
Q Consensus 28 A~~~L~~fq~s-~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~ki~~~~~--------~l~~e~~~~lr~~Ll~~l~ 98 (930)
|+++|.+|+++ |+.|..+..++.+.. .+.++|+||+.+|+++|+++|. .+|++.+..||+.|++.+.
T Consensus 1 AE~~L~~~~~~~p~~~~~l~~il~~~~----~~~~~R~~A~i~LKn~I~~~W~~~~~~~~~~~~~~~k~~Ik~~ll~~l~ 76 (77)
T PF03810_consen 1 AEQQLKQFQKQNPGFWQYLLQILSSNS----QDPEVRQLAAILLKNLIKKNWSPSKQKGWSQLPEEEKEQIKSQLLQLLL 76 (77)
T ss_dssp HHHHHHHHHHSCTCHHHHHHHHHHCTT----SCHHHHHHHHHHHHHHHHHSGGHHHHHHHHGSSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhHHHHHHHHHHccC----CCHHHHHHHHHHHHHHHHHcCchhhccCCCCCCHHHHHHHHHHHHHHHc
Confidence 78999999999 999999999996643 4689999999999999999999 9999999999999999875
No 19
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.60 E-value=0.00021 Score=84.84 Aligned_cols=372 Identities=15% Similarity=0.153 Sum_probs=215.2
Q ss_pred HHHHHHHHHHHHHHHhcCch---HHHHHHHHhhhcCCCCCCCchhhhHHHHHHHhhhhccccCCCccchhHHHHHHHHhc
Q 002370 415 QFRMNLVELLVDICQLLRSA---TFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLS 491 (930)
Q Consensus 415 ~~R~~~~d~l~~~~~~l~~~---~~l~~~~~~~~~~~~~~~~W~~~Ea~L~~l~~iae~~~~~~~~~~l~~i~~~l~~l~ 491 (930)
.-|+.++|++..+..-..++ ..++-+++.. .+.+-+..|++++.++++.+.+..... .+++.+..++.+-.
T Consensus 95 ~vr~k~~dviAeia~~~l~e~WPell~~L~q~~-----~S~~~~~rE~al~il~s~~~~~~~~~~-~~~~~l~~lf~q~~ 168 (1075)
T KOG2171|consen 95 SVRHKLADVIAEIARNDLPEKWPELLQFLFQST-----KSPNPSLRESALLILSSLPETFGNTLQ-PHLDDLLRLFSQTM 168 (1075)
T ss_pred HHHHHHHHHHHHHHHhccccchHHHHHHHHHHh-----cCCCcchhHHHHHHHHhhhhhhccccc-hhHHHHHHHHHHhc
Confidence 57899999999988876654 2444444433 234566779999999999999986544 23566777776655
Q ss_pred cCchhhhhhHHHHHHHHHHHHHHhhHHHHHhch-------hchHHHHHHHHHhccccc--hhHHHHHHHHHHHHHhhccc
Q 002370 492 ASRSEELKGFMHIVYRSLADVIGSYSKWISAFQ-------TNARPLLLFLAAGISEAV--SSNACASALRKICEDASALI 562 (930)
Q Consensus 492 ~~~~~~~~~~~~v~~~t~~~~ig~y~~wl~~~p-------~~L~~vl~~l~~~l~~p~--v~~~Aa~al~~lc~~c~~~l 562 (930)
..|... ||.++ .+.+|.|+.++..++ ..+|.+++.+-..+.+-+ ....+-.+|..|.+.+++.+
T Consensus 169 ~d~s~~------vr~~a-~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l 241 (1075)
T KOG2171|consen 169 TDPSSP------VRVAA-VRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLL 241 (1075)
T ss_pred cCCcch------HHHHH-HHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHH
Confidence 555422 45545 489999999886433 245555555544444322 34566677778888888777
Q ss_pred CCCccHHHHHHHH-HHHHhcCCChhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHHHHhhhhccC-----CCCCC
Q 002370 563 DEPSNLEILMWIG-EALEKRHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDN-----NHSLI 636 (930)
Q Consensus 563 ~~p~~~~~l~~~~-~~l~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~~l~~ll~p~~~~l~~~~~~~~-----~~~~~ 636 (930)
. | ++..+.++. +...+..++...|...+|-+.+.+...|.-. +....+..+++..+-..+.... .+...
T Consensus 242 ~-~-~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~---k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~ 316 (1075)
T KOG2171|consen 242 R-P-HLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMC---KKLALLGHTLVPVLLAMMTEEEDDDEWSNEDD 316 (1075)
T ss_pred H-H-HHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHh---hhchhhhccHHHHHHHhcCCcccchhhccccc
Confidence 5 3 555555544 3335678899999999999999988755422 2223355555555554443221 11001
Q ss_pred CCchhhHHHHHHhHHHHHhhhcccccccccCCCCCCCCchHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHH
Q 002370 637 HNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQS 716 (930)
Q Consensus 637 ~~~~~~~~~l~~~~~~l~~l~~i~~~l~~~~~~~~~~~~p~~~~~~~i~~~l~~i~~~~~~~~~~v~e~~c~~~~~~i~~ 716 (930)
.+.++....=..+.+.++|++.- +.+ +. ++-.+++.+.+.++. .+-.-+.++...+..+..-
T Consensus 317 ~ded~~~~~~~~A~~~lDrlA~~---L~g--------~~----v~p~~~~~l~~~l~S---~~w~~R~AaL~Als~i~EG 378 (1075)
T KOG2171|consen 317 LDEDDEETPYRAAEQALDRLALH---LGG--------KQ----VLPPLFEALEAMLQS---TEWKERHAALLALSVIAEG 378 (1075)
T ss_pred cccccccCcHHHHHHHHHHHHhc---CCh--------hh----ehHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHcc
Confidence 11111100111356678887622 221 01 111123344444431 2223345666667766666
Q ss_pred hhhhhHhhHHHHHHHHHHhhhhhCCcchHHHHHHHHHHHhcCCCCccchHHHHHHHHhhhHHHHHhhcCCCCCCCCchHH
Q 002370 717 SGQHFVTLLPQVLDCLSTNFVSFQNHECYIRTASVVIEEFGHKDEYGPLFVTTFERFSQAASVRALNSSYICDQEPDLVE 796 (930)
Q Consensus 717 l~~~~~p~l~~l~~~l~~~~~~~~~~~~~L~l~~~li~~fg~~~~~~~~l~~l~~~l~~~~~~~~l~~~~~~~~~pD~~~ 796 (930)
+++.+.+.+|++++.++..+. +||+-+=|.+.-.+..+..+ +.+.+..-.. +.. ...+...-+-..+|-+-.
T Consensus 379 c~~~m~~~l~~Il~~Vl~~l~--DphprVr~AA~naigQ~std--l~p~iqk~~~---e~l-~~aL~~~ld~~~~~rV~a 450 (1075)
T KOG2171|consen 379 CSDVMIGNLPKILPIVLNGLN--DPHPRVRYAALNAIGQMSTD--LQPEIQKKHH---ERL-PPALIALLDSTQNVRVQA 450 (1075)
T ss_pred cHHHHHHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHhhhhh--hcHHHHHHHH---Hhc-cHHHHHHhcccCchHHHH
Confidence 777888899999999887664 48888888888888888764 4444444222 111 111211111133443333
Q ss_pred HHHHHHHHHHhhhhHHHHhhchhchHHHHHHHHHhhc
Q 002370 797 AYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICCT 833 (930)
Q Consensus 797 ~~f~l~~~~l~~~p~~~~~s~~~~l~~~l~~~l~~l~ 833 (930)
..-.=+-.+...|+...+. ++++.+++.-+..+.
T Consensus 451 hAa~al~nf~E~~~~~~l~---pYLd~lm~~~l~~L~ 484 (1075)
T KOG2171|consen 451 HAAAALVNFSEECDKSILE---PYLDGLMEKKLLLLL 484 (1075)
T ss_pred HHHHHHHHHHHhCcHHHHH---HHHHHHHHHHHHHHh
Confidence 3333334455677777774 678888885554443
No 20
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.91 E-value=0.075 Score=59.96 Aligned_cols=342 Identities=14% Similarity=0.135 Sum_probs=164.6
Q ss_pred HHHHHHhhhhccccCCC-ccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHh-chh---chHHHHHHH
Q 002370 460 KLFALNVVSEVVLQEGQ-AFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISA-FQT---NARPLLLFL 534 (930)
Q Consensus 460 ~L~~l~~iae~~~~~~~-~~~l~~i~~~l~~l~~~~~~~~~~~~~v~~~t~~~~ig~y~~wl~~-~p~---~L~~vl~~l 534 (930)
++|-++..+..+..+.. ..-.|.+-.++..+....+ + |.-+ .++.++.+-+. .++ ||..+|.-+
T Consensus 454 TCWTLsRys~wv~~~~~~~~f~pvL~~ll~~llD~NK-~------VQEA----AcsAfAtleE~A~~eLVp~l~~IL~~l 522 (885)
T KOG2023|consen 454 TCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRLLDSNK-K------VQEA----ACSAFATLEEEAGEELVPYLEYILDQL 522 (885)
T ss_pred eeeeHhhhhhhHhcCChHhhhHHHHHHHHHHHhcccH-H------HHHH----HHHHHHHHHHhccchhHHHHHHHHHHH
Confidence 35556666665553332 1212344445655554433 1 3332 23344444443 222 667777777
Q ss_pred HHhcc---ccchhHHHHHHHHHHHHHhhcccCCCccHHH----HHHHHHHHHhcCCChhhHHHHHHHHHHHHccC-----
Q 002370 535 AAGIS---EAVSSNACASALRKICEDASALIDEPSNLEI----LMWIGEALEKRHLPLEDEEEVVGAISLILGSV----- 602 (930)
Q Consensus 535 ~~~l~---~p~v~~~Aa~al~~lc~~c~~~l~~p~~~~~----l~~~~~~l~~~~l~~~~~~~l~eai~~vi~~~----- 602 (930)
..+++ +..+ .--..|+..+++.|+..|..|.++.+ |.+-...+.+ +.++..-++|++++|.+++
T Consensus 523 ~~af~kYQ~KNL-lILYDAIgtlAdsvg~~Ln~~~YiqiLmPPLi~KW~~lsd---~DKdLfPLLEClSsia~AL~~gF~ 598 (885)
T KOG2023|consen 523 VFAFGKYQKKNL-LILYDAIGTLADSVGHALNKPAYIQILMPPLIEKWELLSD---SDKDLFPLLECLSSIASALGVGFL 598 (885)
T ss_pred HHHHHHHhhcce-ehHHHHHHHHHHHHHHhcCcHHHHHHhccHHHHHHHhcCc---ccchHHHHHHHHHHHHHHHhcccc
Confidence 66665 2332 22367899999999998876655544 3333333222 3456677888888888774
Q ss_pred CchHHHHHHHHHHHHHHHHHHHhhhhccCCCC-CCCCchhhHHHHHHhHHHHHhhhcccccccccCCCCCCCCchHHHHH
Q 002370 603 SNKELKNNLLARLLSSSYEAIGKLIDGDNNHS-LIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALL 681 (930)
Q Consensus 603 p~~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~l~~l~~i~~~l~~~~~~~~~~~~p~~~~~ 681 (930)
|... ...++.++-+-..+++......+.. ...+.. + .+-.++-++-+..++.... +|.+..
T Consensus 599 P~~~---~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkd-f------iI~sLDL~SGLaegLg~~i-------e~Lva~- 660 (885)
T KOG2023|consen 599 PYAQ---PVYQRCFRILQKTLQLLAKVQQDPTVEAPDKD-F------IIVSLDLLSGLAEGLGSHI-------EPLVAQ- 660 (885)
T ss_pred ccCH---HHHHHHHHHHHHHHHHHHhccCCccccCCCcc-e------EEEeHHHHhHHHHHhhhch-------HHHhhh-
Confidence 3322 2223333333322333332222110 111111 1 1112333322223332211 121111
Q ss_pred HHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhhhhhCCcc-h--HHHHHHHHHHHhcC
Q 002370 682 RVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTNFVSFQNHE-C--YIRTASVVIEEFGH 758 (930)
Q Consensus 682 ~~i~~~l~~i~~~~~~~~~~v~e~~c~~~~~~i~~l~~~~~p~l~~l~~~l~~~~~~~~~~~-~--~L~l~~~li~~fg~ 758 (930)
+.+..++...+. -.-++|++.+..+++...+.+-+++.|.+..++..+...+... ..+ | ..|.++-+..++|.
T Consensus 661 snl~~lll~C~~---D~~peVRQS~FALLGDltk~c~~~v~p~~~~fl~~lg~Nl~~~-~isv~nNA~WAiGeia~k~g~ 736 (885)
T KOG2023|consen 661 SNLLDLLLQCLQ---DEVPEVRQSAFALLGDLTKACFEHVIPNLADFLPILGANLNPE-NISVCNNAIWAIGEIALKMGL 736 (885)
T ss_pred ccHHHHHHHHhc---cCChHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHhhcCChh-hchHHHHHHHHHHHHHHHhch
Confidence 223344433332 2346889988888888888776677776666666665544322 222 2 36777777777876
Q ss_pred CCCccchHHHHHHHHhhhHHHHHhhcCCCCCCCCchHHHHHHHHHHHHhhhhHHHHhhchhchHHHHHHHHHhh-ccCch
Q 002370 759 KDEYGPLFVTTFERFSQAASVRALNSSYICDQEPDLVEAYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICC-TAMHR 837 (930)
Q Consensus 759 ~~~~~~~l~~l~~~l~~~~~~~~l~~~~~~~~~pD~~~~~f~l~~~~l~~~p~~~~~s~~~~l~~~l~~~l~~l-~~~e~ 837 (930)
. ..+.+..++..+... ++. ....-.+.+..=--++|+-..||..+.+. ++.++.=....+ ...+.
T Consensus 737 ~--~~~~v~~vl~~L~~i-----in~---~~~~~tllENtAITIGrLg~~~Pe~vAp~----l~~f~~pWc~sl~~i~Dn 802 (885)
T KOG2023|consen 737 K--MKQYVSPVLEDLITI-----INR---QNTPKTLLENTAITIGRLGYICPEEVAPH----LDSFMRPWCTSLRNIDDN 802 (885)
T ss_pred h--hhhHHHHHHHHHHHH-----hcc---cCchHHHHHhhhhhhhhhhccCHHhcchh----HHHHHHHHHHHhcccccc
Confidence 4 234444444322211 111 11222344554455667777788776643 444333222222 23344
Q ss_pred hHHHHHHHHHHHHHh
Q 002370 838 GAALAAMSYLSCFLE 852 (930)
Q Consensus 838 ~~~~a~~~fl~~li~ 852 (930)
+-..+|+.=+.++++
T Consensus 803 eEK~sAFrG~c~mi~ 817 (885)
T KOG2023|consen 803 EEKESAFRGLCNMIN 817 (885)
T ss_pred hhHHHHHHHHHHhee
Confidence 444455444444444
No 21
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.58 E-value=0.11 Score=64.21 Aligned_cols=174 Identities=13% Similarity=0.117 Sum_probs=99.7
Q ss_pred hhhhcHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHhcCc------hHHHHHHHHhhhcCC
Q 002370 375 VEDMFFSVFSALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRS------ATFIQKVFFGSWGSA 448 (930)
Q Consensus 375 ~~~~~~~~~~~Ll~~l~~k~~~p~~~~~~~~~~d~~d~f~~~R~~~~d~l~~~~~~l~~------~~~l~~~~~~~~~~~ 448 (930)
..+..+|++.+|++.+. +.+||++ ..+.+.+.+++..+-. +.+++.+++.++.+.
T Consensus 988 a~~kl~p~l~kLIPrLy-RY~yDP~------------------~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~l 1048 (1702)
T KOG0915|consen 988 AGEKLEPYLKKLIPRLY-RYQYDPD------------------KKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNL 1048 (1702)
T ss_pred HHHhhhhHHHHhhHHHh-hhccCCc------------------HHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhc
Confidence 45677888999888874 4567655 2344566666665432 247788888776532
Q ss_pred CCCCCchhhhHHHHHHHhhhhccccCCCccchhHHHHHHHHhccCchhhhhhHHHHH-HHHHHHHHHhhHHHH--Hhchh
Q 002370 449 NVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIV-YRSLADVIGSYSKWI--SAFQT 525 (930)
Q Consensus 449 ~~~~~W~~~Ea~L~~l~~iae~~~~~~~~~~l~~i~~~l~~l~~~~~~~~~~~~~v~-~~t~~~~ig~y~~wl--~~~p~ 525 (930)
.+..|+.+||++.|+.-+-.+=+.++-...+|.++..+-..-++-+.. .|.++-+ .+++..++.+.++=. ....+
T Consensus 1049 -t~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEs-VR~aa~~~~~~lsKl~vr~~d~~~~~~~~~ 1126 (1702)
T KOG0915|consen 1049 -TSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKES-VREAADKAARALSKLCVRICDVTNGAKGKE 1126 (1702)
T ss_pred -cchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhcccCCcccHHH
Confidence 345699999999999988665432211112344433222222221111 1111111 112223333333310 01236
Q ss_pred chHHHHHHHH-Hhccc--cchhHHHHHHHHHHHHHhhcccCCCccHHHH
Q 002370 526 NARPLLLFLA-AGISE--AVSSNACASALRKICEDASALIDEPSNLEIL 571 (930)
Q Consensus 526 ~L~~vl~~l~-~~l~~--p~v~~~Aa~al~~lc~~c~~~l~~p~~~~~l 571 (930)
.+..+|+|++ .|+.+ +++++.+-.++.++.+..++.+. | +.+-|
T Consensus 1127 ~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lk-P-~~~~L 1173 (1702)
T KOG0915|consen 1127 ALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELK-P-HFPKL 1173 (1702)
T ss_pred HHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhc-c-hhhHH
Confidence 8888999998 34443 56899999999999999998775 4 44433
No 22
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=97.49 E-value=0.16 Score=56.27 Aligned_cols=86 Identities=17% Similarity=0.192 Sum_probs=48.5
Q ss_pred hhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHhchhchHHHHHHHHHhccccc--hhHHHHHHHHHH---
Q 002370 480 FSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGISEAV--SSNACASALRKI--- 554 (930)
Q Consensus 480 l~~i~~~l~~l~~~~~~~~~~~~~v~~~t~~~~ig~y~~wl~~~p~~L~~vl~~l~~~l~~p~--v~~~Aa~al~~l--- 554 (930)
+|.+++++..--+++.. ....+..-.++++.+..+.. ....+.+|+.|+=..++.++ -+.+|..||-++
T Consensus 323 lP~lL~LL~~q~ed~~~-DdWn~smaA~sCLqlfaq~~-----gd~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~g 396 (858)
T COG5215 323 LPELLSLLEKQGEDYYG-DDWNPSMAASSCLQLFAQLK-----GDKIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHG 396 (858)
T ss_pred HHHHHHHHHhcCCCccc-cccchhhhHHHHHHHHHHHh-----hhHhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcC
Confidence 35566666554333321 12222223334333333322 23467889999999888776 578899999888
Q ss_pred -HHHhhcccCCCccHHHHH
Q 002370 555 -CEDASALIDEPSNLEILM 572 (930)
Q Consensus 555 -c~~c~~~l~~p~~~~~l~ 572 (930)
|++|...++ |+.++.+.
T Consensus 397 p~~~~lT~~V-~qalp~i~ 414 (858)
T COG5215 397 PCEDCLTKIV-PQALPGIE 414 (858)
T ss_pred ccHHHHHhhH-HhhhHHHH
Confidence 466665554 34444443
No 23
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=96.87 E-value=1.6 Score=51.79 Aligned_cols=207 Identities=18% Similarity=0.178 Sum_probs=115.4
Q ss_pred HHHHHHHHHHHhccCCChHHHHHHHHHHHHhhcC---hHH----HHHHHHhhccCCCCCCccchhHHhhhHHhHHHhcc-
Q 002370 5 LQIKVAQAVHVLNHDTESCNRVAANQWLVQFQQT---DAA----WEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQN- 76 (930)
Q Consensus 5 ~~~~v~~av~~ly~~~d~~~~~~A~~~L~~fq~s---~~a----W~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~ki~~- 76 (930)
.-..|..++-.+....+++.++.|-++|-=+-+- ..- -.+|..++... .+-|..++..|+..|.+
T Consensus 44 Se~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le~~ve~L~~~~~s~k-------eq~rdissi~Lktvi~nl 116 (1233)
T KOG1824|consen 44 SERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLETIVENLCSNMLSGK-------EQLRDISSIGLKTVIANL 116 (1233)
T ss_pred chhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhhhccch-------hhhccHHHHHHHHHHhcC
Confidence 3456777777777788889999999998732211 111 12444444322 35555555555555542
Q ss_pred ----------------------------------------------CcCCCChHHHHHHHHHHHHHHHHhcCCC-HHHHH
Q 002370 77 ----------------------------------------------EGYYLQSAAKDALLNALLVAAKRFSSGP-PQLLT 109 (930)
Q Consensus 77 ----------------------------------------------~~~~l~~e~~~~lr~~Ll~~l~~~~~~~-~~v~~ 109 (930)
++.++=++.+..+...++-.+. .+ ..||.
T Consensus 117 ~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~fh~~il~~l~~ql~----s~R~aVrK 192 (1233)
T KOG1824|consen 117 PPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPNFHLSILKCLLPQLQ----SPRLAVRK 192 (1233)
T ss_pred CCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcchHHHHHHHHhhccc----ChHHHHHH
Confidence 1111111123333333332222 13 36899
Q ss_pred HHHHHHHHHHHHhc--ccCchHHHHHHHhhcccCCCchhHHHHHHHhhhhcccccccccccCCCHHHHHHHHHHHHhhhh
Q 002370 110 QICLALSALILRAV--EHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDSQASDCNISSAHRSQYGQELLSHTP 187 (930)
Q Consensus 110 kL~~~La~l~~~~~--~W~~~i~~li~~~~~~~~~~~~~~~~L~iL~~l~EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~ 187 (930)
|-|.+|+.++.... -..+.+.+++..+.+. .++.....+...|..+.--.+. ++-..+...++
T Consensus 193 kai~~l~~la~~~~~~ly~~li~~Ll~~L~~~-~q~~~~rt~Iq~l~~i~r~ag~--------------r~~~h~~~ivp 257 (1233)
T KOG1824|consen 193 KAITALGHLASSCNRDLYVELIEHLLKGLSNR-TQMSATRTYIQCLAAICRQAGH--------------RFGSHLDKIVP 257 (1233)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhccCCC-CchHHHHHHHHHHHHHHHHhcc--------------hhhcccchhhH
Confidence 99999999998876 2456677777766553 1233344555555555543321 11112223345
Q ss_pred HHHHHHHHHHhhccCCCCCcchhhhHHHHHHHHHHHHHhccccccCcchh-cccchHHHHHHhcC
Q 002370 188 MVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSL-AAHPLLNFVFNSLQ 251 (930)
Q Consensus 188 ~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~c~~sWi~~~~~~~~~~~~i-~~~~ll~~l~~~L~ 251 (930)
.|.++++.. +. .+.++++.+++++.+++.+.+ .+-. ....+++.+++.+.
T Consensus 258 ~v~~y~~~~-e~--------~dDELrE~~lQale~fl~rcp-----~ei~p~~pei~~l~l~yis 308 (1233)
T KOG1824|consen 258 LVADYCNKI-EE--------DDDELREYCLQALESFLRRCP-----KEILPHVPEIINLCLSYIS 308 (1233)
T ss_pred HHHHHhccc-cc--------CcHHHHHHHHHHHHHHHHhCh-----hhhcccchHHHHHHHHHhc
Confidence 555555433 11 356899999999999999753 3322 35567777777775
No 24
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=96.55 E-value=0.2 Score=55.23 Aligned_cols=199 Identities=15% Similarity=0.245 Sum_probs=100.6
Q ss_pred HHHHHHHhcccCCCCCch-hhhhcHHHHHHHHHHhhccchhhhhhhhhhhhhc--HHHHHHHHH-HHHHHhccCCCC---
Q 002370 328 ALADALLSCVAFPSEDWE-IADSTLQFWSTLASYILGLDASIAKNKKHVEDMF--FSVFSALLD-ALLLRAQVDESS--- 400 (930)
Q Consensus 328 ~ll~~ll~~~~~p~~d~~-v~~~~~~fW~~l~~~l~~~~~~~~~~~~~~~~~~--~~~~~~Ll~-~l~~k~~~p~~~--- 400 (930)
.+.++|......+ .++ +...++.|-..+.+. . .....| ++.+.+++. +++..|.+-+++
T Consensus 141 ~vw~lL~~~~~~~--~~D~lv~~al~FL~~v~~~----~--------~~~~lf~~~~~L~~Iie~VI~Pnl~~~e~D~El 206 (370)
T PF08506_consen 141 AVWNLLTKISQQP--KYDILVSKALQFLSSVAES----P--------HHKNLFENKPHLQQIIEKVIFPNLCLREEDEEL 206 (370)
T ss_dssp HHHHHHTC--SSG--GGHHHHHHHHHHHHHHHTS----H--------HHHTTT-SHHHHHHHHHHTHHHHHS--HHHHHH
T ss_pred HHHHHHHHhhhcc--cccHHHHHHHHHHHHHHcc----h--------hHHHHhCCHHHHHHHHHHhccCccCCCHHHHHH
Confidence 4566666655555 334 556788886554331 1 112233 567777776 445667764331
Q ss_pred CCCC------CCCCCCchHHHHHHHHHHHHHHHHHhcCchH------HHHHHHHhhhcCCCCCCCchhhhHHHHHHHhhh
Q 002370 401 FNDD------GMVDLPDGLVQFRMNLVELLVDICQLLRSAT------FIQKVFFGSWGSANVPIPWKEVETKLFALNVVS 468 (930)
Q Consensus 401 ~~~~------~~~d~~d~f~~~R~~~~d~l~~~~~~l~~~~------~l~~~~~~~~~~~~~~~~W~~~Ea~L~~l~~ia 468 (930)
|.+| -+ -|..|+..-|+...|+++..+.--+... +++.++..... +++.+|+..++++|.+++++
T Consensus 207 fEddP~EYIrrd-~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~--~~~~~w~~KD~Al~Li~ala 283 (370)
T PF08506_consen 207 FEDDPEEYIRRD-LEGSDSDTRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYAS--NPSNNWRSKDGALYLIGALA 283 (370)
T ss_dssp HHHSHHHHHHHH-SCSS---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---TTT-HHHHHHHHHHHHHHH
T ss_pred HccCHHHHHHhh-ccccccCCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhh--CCcccHHHHHHHHHHHHHHH
Confidence 2110 00 1124566677778888888776543321 22222222212 23568999999999999997
Q ss_pred hcccc--CC--CccchhHHHHHHH-----Hhc-cCchhhhhhHHHHHHHHHHHHHHhhHHHHHhchhchHHHHHHHHHhc
Q 002370 469 EVVLQ--EG--QAFDFSVIMQLVA-----VLS-ASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGI 538 (930)
Q Consensus 469 e~~~~--~~--~~~~l~~i~~~l~-----~l~-~~~~~~~~~~~~v~~~t~~~~ig~y~~wl~~~p~~L~~vl~~l~~~l 538 (930)
..... .+ +...+-.+.+++. .+. +... .+-++. .+++.+..+-.-+ .++.+..+++.++..|
T Consensus 284 ~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~~~~~~-----~piLka-~aik~~~~Fr~~l--~~~~l~~~~~~l~~~L 355 (370)
T PF08506_consen 284 SKGSTTKSGVTQTNELVDVVDFFSQHVLPELQPDVNS-----HPILKA-DAIKFLYTFRNQL--PKEQLLQIFPLLVNHL 355 (370)
T ss_dssp BSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH-SS-S------HHHHH-HHHHHHHHHGGGS---HHHHHHHHHHHHHHT
T ss_pred hhhccccCCcccccccccHHHHHHHHhHHHhcccCCC-----CcchHH-HHHHHHHHHHhhC--CHHHHHHHHHHHHHHh
Confidence 54321 01 0001122333332 222 1111 122344 3357777666533 4678899999999999
Q ss_pred cccc--hhHHHHHHH
Q 002370 539 SEAV--SSNACASAL 551 (930)
Q Consensus 539 ~~p~--v~~~Aa~al 551 (930)
.++. |..-||.|+
T Consensus 356 ~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 356 QSSSYVVHTYAAIAI 370 (370)
T ss_dssp TSS-HHHHHHHHHHH
T ss_pred CCCCcchhhhhhhhC
Confidence 9876 667777664
No 25
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]
Probab=96.50 E-value=2.8 Score=49.82 Aligned_cols=113 Identities=16% Similarity=0.135 Sum_probs=86.7
Q ss_pred CCChHHHHHHHHHHHHhhcChHHHHHHHHhhccCCCCCCccchhHHhhhHHhHHHhccCcCC-----CChHHHHHHHHHH
Q 002370 19 DTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYY-----LQSAAKDALLNAL 93 (930)
Q Consensus 19 ~~d~~~~~~A~~~L~~fq~s~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~ki~~~~~~-----l~~e~~~~lr~~L 93 (930)
++||..++.|++-|++..+.++ ++..|+.-... ...+...|.-|+.-+++-|.++|.+ +.++....+|..+
T Consensus 15 s~~p~s~k~AE~~Lrqwe~q~g---F~~kL~~I~~~-~~~~m~lR~~a~i~fkn~I~~~W~~~~~~~i~p~e~v~IR~~l 90 (947)
T COG5657 15 SPDPPSVKCAEERLRQWEKQHG---FALKLLSINLS-AFNSMSLRWAALIQFKNYIDKHWREENGNSILPDENVLIRDEL 90 (947)
T ss_pred CCCCchHhhHHHHHHhhhcccc---HHHHHHHHHhc-cccchhHHHHHHHHHHhhHHHHhhhhcccCCCCccchHHHHHH
Confidence 6778889999999999999887 44444443221 1357899999999999999999986 4445555999999
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHh-c-ccCchHHHHHHHhhc
Q 002370 94 LVAAKRFSSGPPQLLTQICLALSALILRA-V-EHGKPIEKLFYSLQN 138 (930)
Q Consensus 94 l~~l~~~~~~~~~v~~kL~~~La~l~~~~-~-~W~~~i~~li~~~~~ 138 (930)
+..+.+. +....-|.+.+++.+|--. + .||+.++|+++.++.
T Consensus 91 ~~lii~s---~n~l~iq~a~avs~IA~~DfPdeWpTL~~DL~~~Ls~ 134 (947)
T COG5657 91 FSLIISS---SNQLQIQNALAVSRIARLDFPDEWPTLVPDLLSLLSE 134 (947)
T ss_pred HHHHHcc---cchHHHHHHHHHHHHHhccCcccchhHHHHHHhhhcc
Confidence 9988753 3333337788888887554 3 799999999999986
No 26
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.75 E-value=6.7 Score=47.26 Aligned_cols=383 Identities=14% Similarity=0.090 Sum_probs=187.2
Q ss_pred hHHHHHHHHHHHHHhccccccCcchhcccchHHHHHHhcCCCCcH--HHHHHHHHHHHhccC-C----------hhHHHH
Q 002370 212 RNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSLQVQSSF--DVAIEVLVELVGRHE-G----------LPQALL 278 (930)
Q Consensus 212 ~~~~~l~c~~sWi~~~~~~~~~~~~i~~~~ll~~l~~~L~~~~~~--~~a~~~l~ei~~~~~-~----------~~~~l~ 278 (930)
+|..--.|+..-|.. ..| + .+..+++.+-..|++++.. -.++-|+.++...++ + .++.++
T Consensus 105 iRvql~~~l~~Ii~~----D~p-~--~Wp~l~d~i~~~Lqs~~~~~vy~aLl~l~qL~k~ye~k~~eeR~~l~~~v~~~f 177 (1010)
T KOG1991|consen 105 IRVQLTACLNTIIKA----DYP-E--QWPGLLDKIKNLLQSQDANHVYGALLCLYQLFKTYEWKKDEERQPLGEAVEELF 177 (1010)
T ss_pred HHHHHHHHHHHHHhc----CCc-c--cchhHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHhhccccccccHHHHHHHHH
Confidence 455555666666663 233 2 2567888888888887653 467888888887653 1 345677
Q ss_pred hhhhhhHHhhhchhhccCcHhHHhhHHHHHHHHHHhhhHHHHhcChhHHHHHHHHHhcccCCCCCc------hhh-----
Q 002370 279 CRVPFLKELLLLPALTDGDEKVIGGLACLMSEIGQAAPSLIVEASPEALALADALLSCVAFPSEDW------EIA----- 347 (930)
Q Consensus 279 ~~~~~l~~~~~~~~~~~~d~d~~~~l~~l~~~~~e~~~~~l~~~~~~~~~ll~~ll~~~~~p~~d~------~v~----- 347 (930)
|.++++...+.. .-..+..+..+-++++|-++.-.-.+.-...++.+..-+++.+.+.+-|+..+ ++.
T Consensus 178 P~il~~~~~ll~-~~s~~s~el~klIlKifks~~~~~LP~~L~~~~~f~~W~~l~l~i~~rpvP~E~l~~d~e~R~~~~w 256 (1010)
T KOG1991|consen 178 PDILQIFNGLLS-QESYQSVELQKLILKIFKSLIYYELPLELSAPETFTSWMELFLSILNRPVPVEVLSLDPEDRSSWPW 256 (1010)
T ss_pred HHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHhCCHHhhCchhHHHHHHHHHHHHcCCCChhcccCChhhcccccc
Confidence 877765443321 11112234567778888777665444444445556677888888887776311 111
Q ss_pred ----hhcHHHHHHHHHHhhccchhhhhhhhhhhhhc-HHHHHHHHHHHHHHhc-cCCCCCCCCCCCCCCchHHHHHHHHH
Q 002370 348 ----DSTLQFWSTLASYILGLDASIAKNKKHVEDMF-FSVFSALLDALLLRAQ-VDESSFNDDGMVDLPDGLVQFRMNLV 421 (930)
Q Consensus 348 ----~~~~~fW~~l~~~l~~~~~~~~~~~~~~~~~~-~~~~~~Ll~~l~~k~~-~p~~~~~~~~~~d~~d~f~~~R~~~~ 421 (930)
.=++.+-+++.+...+... ...+-....+.| ..+...+++++++-+. |-.. .|-.+ +-- ..+.
T Consensus 257 wK~KKWa~~~L~Rlf~Ryg~~~~-~~~~y~~Fa~~f~~n~~~~ile~~lk~l~~~~~~----~yls~---rvl---~~~l 325 (1010)
T KOG1991|consen 257 WKCKKWALHILNRLFERYGSPSL-VVPEYKEFAQMFLKNFAQGILEVFLKILEQWRQQ----LYLSD---RVL---YYLL 325 (1010)
T ss_pred hhhHHHHHHHHHHHHHHhCCccc-cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----ccCCH---HHH---HHHH
Confidence 1144444444433221110 000001111122 2233444455544432 1111 12111 100 1111
Q ss_pred HHH------HHHHHhcCchHHHHHHHHh-----hhcCCCCCCCch-------------------hhhHHHHHHHhhhhcc
Q 002370 422 ELL------VDICQLLRSATFIQKVFFG-----SWGSANVPIPWK-------------------EVETKLFALNVVSEVV 471 (930)
Q Consensus 422 d~l------~~~~~~l~~~~~l~~~~~~-----~~~~~~~~~~W~-------------------~~Ea~L~~l~~iae~~ 471 (930)
+.+ .+.+..++|- ++.+++. +..+.+...-|+ ..=|++.++..++.
T Consensus 326 ~fl~~~Vs~~~twkll~PH--l~~ii~~vIFPlmc~~d~deelwe~DP~EYiR~~~Di~ed~~sp~~Aa~~~l~~~~~-- 401 (1010)
T KOG1991|consen 326 NFLEQCVSHASTWKLLKPH--LQVIIQDVIFPLMCFNDEDEELWEEDPYEYIRKKFDIFEDGYSPDTAALDFLTTLVS-- 401 (1010)
T ss_pred HHHHHhccHHHHHHHhhhH--HHHHHHHhhhhhcCCCcccHHHHhcCHHHHHHhcCchhcccCCCcHHHHHHHHHHHH--
Confidence 222 2234445442 2222222 110100000122 11244555544332
Q ss_pred ccCCCccchhHHHHHHHHhcc----C-chhhhhhHHHHHHHHHHHHHHhhHHHHHhchh---chH-HHHHHHHHhccccc
Q 002370 472 LQEGQAFDFSVIMQLVAVLSA----S-RSEELKGFMHIVYRSLADVIGSYSKWISAFQT---NAR-PLLLFLAAGISEAV 542 (930)
Q Consensus 472 ~~~~~~~~l~~i~~~l~~l~~----~-~~~~~~~~~~v~~~t~~~~ig~y~~wl~~~p~---~L~-~vl~~l~~~l~~p~ 542 (930)
+.+. ..++.+++++..+.. . +..... ...-.++.++|+.++.+..... .++ -+++.+++.+..|.
T Consensus 402 -KR~k-e~l~k~l~F~~~Il~~~~~~~~~~~~~----rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~ 475 (1010)
T KOG1991|consen 402 -KRGK-ETLPKILSFIVDILTRYKEASPPNKNP----RQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPY 475 (1010)
T ss_pred -hcch-hhhhhHHHHHHHHHHhhcccCCCccCh----hhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCch
Confidence 2211 114666665544321 1 111100 1222447999999998876432 222 34566667777665
Q ss_pred --hhHHHHHHHHHHHH-HhhcccCCCccHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHH
Q 002370 543 --SSNACASALRKICE-DASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSS 619 (930)
Q Consensus 543 --v~~~Aa~al~~lc~-~c~~~l~~p~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~~l~~ll~p~ 619 (930)
++++||.-+..+|+ +-+..- .....+......+.+ .-+-..+..-.-|+-..|+..+. ...++...+.|+
T Consensus 476 g~Lrarac~vl~~~~~~df~d~~---~l~~ale~t~~~l~~-d~~lPV~VeAalALq~fI~~~~~---~~e~~~~hvp~~ 548 (1010)
T KOG1991|consen 476 GYLRARACWVLSQFSSIDFKDPN---NLSEALELTHNCLLN-DNELPVRVEAALALQSFISNQEQ---ADEKVSAHVPPI 548 (1010)
T ss_pred hHHHHHHHHHHHHHHhccCCChH---HHHHHHHHHHHHhcc-CCcCchhhHHHHHHHHHHhcchh---hhhhHhhhhhHH
Confidence 89999999999983 333211 123334444444432 11223355555677777776554 345688889999
Q ss_pred HHHHHhhhhcc
Q 002370 620 YEAIGKLIDGD 630 (930)
Q Consensus 620 ~~~l~~~~~~~ 630 (930)
++.+-.+.+..
T Consensus 549 mq~lL~L~ne~ 559 (1010)
T KOG1991|consen 549 MQELLKLSNEV 559 (1010)
T ss_pred HHHHHHHHHhc
Confidence 99988888754
No 27
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.57 E-value=4 Score=45.90 Aligned_cols=276 Identities=12% Similarity=0.100 Sum_probs=143.9
Q ss_pred hchHHHHHHHHHhccccc--hhHHHHHHHHHHHHHhhcccCCCccHHHHHHHHHHHHh----------------------
Q 002370 525 TNARPLLLFLAAGISEAV--SSNACASALRKICEDASALIDEPSNLEILMWIGEALEK---------------------- 580 (930)
Q Consensus 525 ~~L~~vl~~l~~~l~~p~--v~~~Aa~al~~lc~~c~~~l~~p~~~~~l~~~~~~l~~---------------------- 580 (930)
.|+..+++-++.+++++. ++..||.++.++++-|+.... +++.+++-.+......
T Consensus 80 ~Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~-~~Fn~iFdvL~klsaDsd~~V~~~aeLLdRLikdIVte 158 (675)
T KOG0212|consen 80 GYLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVL-VYFNEIFDVLCKLSADSDQNVRGGAELLDRLIKDIVTE 158 (675)
T ss_pred HHHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcc-cchHHHHHHHHHHhcCCccccccHHHHHHHHHHHhccc
Confidence 388899999999999865 889999999999999998765 3333333222211100
Q ss_pred ------------------cCCChhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCchhh
Q 002370 581 ------------------RHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATY 642 (930)
Q Consensus 581 ------------------~~l~~~~~~~l~eai~~vi~~~p~~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~ 642 (930)
+..++..|..+++=+-. +...|+-+ +-.|+..+++.+++-+.. . .++..
T Consensus 159 ~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~-Lds~P~~~-m~~yl~~~ldGLf~~LsD----~-------s~eVr 225 (675)
T KOG0212|consen 159 SASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYV-LDSVPDLE-MISYLPSLLDGLFNMLSD----S-------SDEVR 225 (675)
T ss_pred cccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHH-HhcCCcHH-HHhcchHHHHHHHHHhcC----C-------cHHHH
Confidence 11234455555554433 34455544 455666665555544321 1 00000
Q ss_pred HHHHHHhHHHHHhhhcccccccccCCCCCCCCchHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHhhhhhH
Q 002370 643 TQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQHFV 722 (930)
Q Consensus 643 ~~~l~~~~~~l~~l~~i~~~l~~~~~~~~~~~~p~~~~~~~i~~~l~~i~~~~~~~~~~v~e~~c~~~~~~i~~l~~~~~ 722 (930)
. ..-.+++.+.+...++. .+-. +.++.+++-.-+ ...++++-..+...+.-.+...|.+..
T Consensus 226 --~-----~~~t~l~~fL~eI~s~P-~s~d--------~~~~i~vlv~~l---~ss~~~iq~~al~Wi~efV~i~g~~~l 286 (675)
T KOG0212|consen 226 --T-----LTDTLLSEFLAEIRSSP-SSMD--------YDDMINVLVPHL---QSSEPEIQLKALTWIQEFVKIPGRDLL 286 (675)
T ss_pred --H-----HHHHHHHHHHHHHhcCc-cccC--------cccchhhccccc---cCCcHHHHHHHHHHHHHHhcCCCcchh
Confidence 0 01112233333332210 0000 111122222211 235666777777777878888888899
Q ss_pred hhHHHHHHHHHHhhhhhCCcchH-----HH-HHHHHH-HHhcCCC-CccchHHHHHHHHhhhHHHHHhhcCCCCCCCCch
Q 002370 723 TLLPQVLDCLSTNFVSFQNHECY-----IR-TASVVI-EEFGHKD-EYGPLFVTTFERFSQAASVRALNSSYICDQEPDL 794 (930)
Q Consensus 723 p~l~~l~~~l~~~~~~~~~~~~~-----L~-l~~~li-~~fg~~~-~~~~~l~~l~~~l~~~~~~~~l~~~~~~~~~pD~ 794 (930)
++++.++..++.+...+.+.+.. .. .+..++ ...+..+ ++.+ +++.+.. .+. .+.-|.
T Consensus 287 ~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~----ii~vl~~-----~l~-----~~~~~t 352 (675)
T KOG0212|consen 287 LYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGS----IIEVLTK-----YLS-----DDREET 352 (675)
T ss_pred hhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHH----HHHHHHH-----Hhh-----cchHHH
Confidence 99998888877655444232111 11 111222 2222211 1111 2221111 121 345667
Q ss_pred HHHHHHHHHHHHhhhhHHHHhhchhchHHHHHHHHHhhccCchhHHHHHHHHHHHHH
Q 002370 795 VEAYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICCTAMHRGAALAAMSYLSCFL 851 (930)
Q Consensus 795 ~~~~f~l~~~~l~~~p~~~~~s~~~~l~~~l~~~l~~l~~~e~~~~~a~~~fl~~li 851 (930)
.-+.++-+..+..+.|.-++.. ...+|...+.++.-+.-+++--++..+..+.
T Consensus 353 ri~~L~Wi~~l~~~~p~ql~~h----~~~if~tLL~tLsd~sd~vvl~~L~lla~i~ 405 (675)
T KOG0212|consen 353 RIAVLNWIILLYHKAPGQLLVH----NDSIFLTLLKTLSDRSDEVVLLALSLLASIC 405 (675)
T ss_pred HHHHHHHHHHHHhhCcchhhhh----ccHHHHHHHHhhcCchhHHHHHHHHHHHHHh
Confidence 7788888888888888887753 3445555555666555555555555555444
No 28
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.32 E-value=7.9 Score=45.29 Aligned_cols=343 Identities=13% Similarity=0.127 Sum_probs=177.4
Q ss_pred CCCchhhhHHHHHHHhhhhccccCCCccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHhchh----c
Q 002370 451 PIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQT----N 526 (930)
Q Consensus 451 ~~~W~~~Ea~L~~l~~iae~~~~~~~~~~l~~i~~~l~~l~~~~~~~~~~~~~v~~~t~~~~ig~y~~wl~~~p~----~ 526 (930)
..+|.---|+=-||.-+++.+.++ .++.++.++..-...|.=+. |-..+ ...|+--+ ...+. +
T Consensus 337 ~DdWnp~kAAg~CL~l~A~~~~D~----Iv~~Vl~Fiee~i~~pdwr~------reaav-mAFGSIl~--gp~~~~Lt~i 403 (859)
T KOG1241|consen 337 DDDWNPAKAAGVCLMLFAQCVGDD----IVPHVLPFIEENIQNPDWRN------REAAV-MAFGSILE--GPEPDKLTPI 403 (859)
T ss_pred cccCcHHHHHHHHHHHHHHHhccc----chhhhHHHHHHhcCCcchhh------hhHHH-HHHHhhhc--CCchhhhhHH
Confidence 346999999999999999988532 25788888885444443221 22222 23333221 11232 4
Q ss_pred hHHHHHHHHHhccccc--hhHHHHHHHHHHHHHhhcccCCCccHHHHHHH-HHHHHh-cCCChh---hHHHHHHHHHHHH
Q 002370 527 ARPLLLFLAAGISEAV--SSNACASALRKICEDASALIDEPSNLEILMWI-GEALEK-RHLPLE---DEEEVVGAISLIL 599 (930)
Q Consensus 527 L~~vl~~l~~~l~~p~--v~~~Aa~al~~lc~~c~~~l~~p~~~~~l~~~-~~~l~~-~~l~~~---~~~~l~eai~~vi 599 (930)
.+..++.++..+.+|. +.+.++-+|-++|+.|.....+..++.....+ ...+.. +.+... ....+.+++--..
T Consensus 404 V~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~DePrva~N~CWAf~~Laea~~eA~ 483 (859)
T KOG1241|consen 404 VIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLNDEPRVASNVCWAFISLAEAAYEAA 483 (859)
T ss_pred HhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHhc
Confidence 4566777777778887 67999999999999998655432233333332 233322 222211 1223333333222
Q ss_pred ccCCchHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCchhhHHHHHHhHHHHHhhhcccccccccCCCCCCCCchHHH
Q 002370 600 GSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFA 679 (930)
Q Consensus 600 ~~~p~~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~l~~i~~~l~~~~~~~~~~~~p~~~ 679 (930)
..-+. ......+..+++..|-...+....+++..+.+. -..|+.++++.. .-+.+
T Consensus 484 ~s~~q----t~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AA-----------YeALmElIk~st----------~~vy~ 538 (859)
T KOG1241|consen 484 VSNGQ----TDPATPFYEAIIGSLLKVTDRADGNQSNLRSAA-----------YEALMELIKNST----------DDVYP 538 (859)
T ss_pred cCCCC----CCccchhHHHHHHHHHhhccccccchhhHHHHH-----------HHHHHHHHHcCc----------HHHHH
Confidence 11111 111224555555655555544321212222222 334444554321 11333
Q ss_pred HHHHHHHHHHH---------HHHhhhc---cchHHHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhhhhhCC----cc
Q 002370 680 LLRVFWPMLEK---------LFRSEHM---ENGNLSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTNFVSFQN----HE 743 (930)
Q Consensus 680 ~~~~i~~~l~~---------i~~~~~~---~~~~v~e~~c~~~~~~i~~l~~~~~p~l~~l~~~l~~~~~~~~~----~~ 743 (930)
..+++.+++.. ++. +. +-.++=.-+|.++..+++..+++..+.-..++..+++.|+.. . +-
T Consensus 539 ~v~~~~l~il~kl~q~i~~~~l~--~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d~iM~lflri~~s~-~s~~v~e 615 (859)
T KOG1241|consen 539 MVQKLTLVILEKLDQTISSQILS--LADRAQLNELQSLLCNTLQSIIRKVGSDIREVSDQIMGLFLRIFESK-RSAVVHE 615 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc--HhhHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHcCC-ccccchH
Confidence 33333333322 221 11 112333578999999999999887777777888888877652 2 22
Q ss_pred hHHHHHHHHHHHhcCCCCccchHHHHHHHHhhhHHHHHhhcCCCCCCCCchHHHHHHHHHHHHhhhhHHHHhhchhchHH
Q 002370 744 CYIRTASVVIEEFGHKDEYGPLFVTTFERFSQAASVRALNSSYICDQEPDLVEAYTNFASTFVRTSRKEVLAASGALLEV 823 (930)
Q Consensus 744 ~~L~l~~~li~~fg~~~~~~~~l~~l~~~l~~~~~~~~l~~~~~~~~~pD~~~~~f~l~~~~l~~~p~~~~~s~~~~l~~ 823 (930)
..+.-.+.++...|.. |..-+..|..-- ...+. ...+++ +.-.-.+|++++.+.--.-|.+. .+.
T Consensus 616 ~a~laV~tl~~~Lg~~------F~kym~~f~pyL-~~gL~---n~~e~q-Vc~~aVglVgdl~raL~~~i~py----~d~ 680 (859)
T KOG1241|consen 616 EAFLAVSTLAESLGKG------FAKYMPAFKPYL-LMGLS---NFQEYQ-VCAAAVGLVGDLARALEDDILPY----CDE 680 (859)
T ss_pred HHHHHHHHHHHHHhHh------HHHHHHHHHHHH-HHHhh---cchHHH-HHHHHHHHHHHHHHHHHhhhhhH----HHH
Confidence 3566677777777764 222111111110 11121 223444 66677788888877766666643 334
Q ss_pred HHHHHHHhhccC--chhHHHHHHHHHHH
Q 002370 824 SFQKAAICCTAM--HRGAALAAMSYLSC 849 (930)
Q Consensus 824 ~l~~~l~~l~~~--e~~~~~a~~~fl~~ 849 (930)
++...+.+|+.+ ||.+.-.++..+.+
T Consensus 681 ~mt~Lvq~Lss~~~hR~vKP~IlS~FgD 708 (859)
T KOG1241|consen 681 LMTVLVQCLSSPNLHRNVKPAILSVFGD 708 (859)
T ss_pred HHHHHHHHccCccccccccchHHHHHHH
Confidence 444455556533 55554444444443
No 29
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=95.24 E-value=7.5 Score=44.51 Aligned_cols=218 Identities=8% Similarity=0.091 Sum_probs=125.0
Q ss_pred hhcHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHhcCchHHHHHHHHhhhcCCCCCCCchh
Q 002370 377 DMFFSVFSALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSATFIQKVFFGSWGSANVPIPWKE 456 (930)
Q Consensus 377 ~~~~~~~~~Ll~~l~~k~~~p~~~~~~~~~~d~~d~f~~~R~~~~d~l~~~~~~l~~~~~l~~~~~~~~~~~~~~~~W~~ 456 (930)
..+.|++..++..++.+.- |. ....++-=.+..+.+++|...-+...++..++..+.. ..||.
T Consensus 208 ~~~EPyiv~~lp~il~~~~----------d~--~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~~-----~kWrt 270 (569)
T KOG1242|consen 208 PPFEPYIVPILPSILTNFG----------DK--INKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLLE-----AKWRT 270 (569)
T ss_pred CCCCchHHhhHHHHHHHhh----------cc--chhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHHH-----Hhhhh
Confidence 4567777777877777662 00 0111111123345666666665555566666666543 26999
Q ss_pred hhHHHHHHHhhhhccccCCCccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHhchhchHHHHHHHHH
Q 002370 457 VETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAA 536 (930)
Q Consensus 457 ~Ea~L~~l~~iae~~~~~~~~~~l~~i~~~l~~l~~~~~~~~~~~~~v~~~t~~~~ig~y~~wl~~~p~~L~~vl~~l~~ 536 (930)
-.+++..+++++++.+..=+ ..++.+++.+....-+.++. ++.+. -.++-+|++.+ .+|+ +.+.++-++.
T Consensus 271 K~aslellg~m~~~ap~qLs-~~lp~iiP~lsevl~DT~~e------vr~a~-~~~l~~~~svi-dN~d-I~~~ip~Lld 340 (569)
T KOG1242|consen 271 KMASLELLGAMADCAPKQLS-LCLPDLIPVLSEVLWDTKPE------VRKAG-IETLLKFGSVI-DNPD-IQKIIPTLLD 340 (569)
T ss_pred HHHHHHHHHHHHHhchHHHH-HHHhHhhHHHHHHHccCCHH------HHHHH-HHHHHHHHHhh-ccHH-HHHHHHHHHH
Confidence 99999999999998764221 12455555544443333322 45544 48888888865 4566 8899999999
Q ss_pred hccccc-hhHHHHHHHHHHHHHhhcccCCCccHHHHHHHHH-HHHhcCCChhhHHHHHHHHHHHHccCCchHHHHHHHHH
Q 002370 537 GISEAV-SSNACASALRKICEDASALIDEPSNLEILMWIGE-ALEKRHLPLEDEEEVVGAISLILGSVSNKELKNNLLAR 614 (930)
Q Consensus 537 ~l~~p~-v~~~Aa~al~~lc~~c~~~l~~p~~~~~l~~~~~-~l~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~~l~~ 614 (930)
++.+|. -...+.+++.. .---+-+.++.++.+.-+.. .+. .-+...+...+.-++.+..-++++.....++..
T Consensus 341 ~l~dp~~~~~e~~~~L~~---ttFV~~V~~psLalmvpiL~R~l~--eRst~~kr~t~~IidNm~~LveDp~~lapfl~~ 415 (569)
T KOG1242|consen 341 ALADPSCYTPECLDSLGA---TTFVAEVDAPSLALMVPILKRGLA--ERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPS 415 (569)
T ss_pred HhcCcccchHHHHHhhcc---eeeeeeecchhHHHHHHHHHHHHh--hccchhhhhHHHHHHHHHHhhcCHHHHhhhHHH
Confidence 999997 33444333321 11111111234444444432 221 123444566677788887777665544444444
Q ss_pred HHHHHHHHHHhhhhcc
Q 002370 615 LLSSSYEAIGKLIDGD 630 (930)
Q Consensus 615 ll~p~~~~l~~~~~~~ 630 (930)
++..++..+..+
T Consensus 416 ----Llp~lk~~~~d~ 427 (569)
T KOG1242|consen 416 ----LLPGLKENLDDA 427 (569)
T ss_pred ----HhhHHHHHhcCC
Confidence 456666655543
No 30
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=95.11 E-value=3 Score=47.20 Aligned_cols=156 Identities=11% Similarity=0.145 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhccchHHH----HHHHHHHHHHHHHhhh---hhHh-hHHHHHHHHHHhhhhhCCcchHHHH
Q 002370 677 IFALLRVFWPMLEKLFRSEHMENGNLS----TAACRALSLAIQSSGQ---HFVT-LLPQVLDCLSTNFVSFQNHECYIRT 748 (930)
Q Consensus 677 ~~~~~~~i~~~l~~i~~~~~~~~~~v~----e~~c~~~~~~i~~l~~---~~~p-~l~~l~~~l~~~~~~~~~~~~~L~l 748 (930)
...+++++..++..+.. -++++... |.++.++|..-..-.. .+.+ ++|++...+.++.. ...+.++.+
T Consensus 65 ~~~il~~L~~il~~v~k--NPsnP~FnHylFEsi~~lir~~~~~~~~~v~~~E~~L~P~f~~ILq~dV~--EF~PYvfQI 140 (435)
T PF03378_consen 65 AVEILQHLTAILKEVSK--NPSNPRFNHYLFESIGALIRFVCEADPEAVSQFEEALFPPFQEILQQDVQ--EFIPYVFQI 140 (435)
T ss_dssp HHHHHHHHHHHHHHHHT--S---HHHHHHHHHHHHHHHHHS-GGGHH---HHHHHHHHHHHHHHHTT-T--TTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh--CCCCcchhhhHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 45677888888888775 45555544 6666666653322111 2333 34544443333332 146778889
Q ss_pred HHHHHHHhcCCCCccchHHHHHHHHhhhHHHHHhhcCCCCCCCCchHHHHHHHHHHHHhhhhHHHHhhchhchHHHHHHH
Q 002370 749 ASVVIEEFGHKDEYGPLFVTTFERFSQAASVRALNSSYICDQEPDLVEAYTNFASTFVRTSRKEVLAASGALLEVSFQKA 828 (930)
Q Consensus 749 ~~~li~~fg~~~~~~~~l~~l~~~l~~~~~~~~l~~~~~~~~~pD~~~~~f~l~~~~l~~~p~~~~~s~~~~l~~~l~~~ 828 (930)
++.+++...+. ...+...+++..+..+. .-+.+.-+-...+|+..++++.|..+... +.++.++...
T Consensus 141 la~Lle~~~~~-~~p~~y~~L~~~Ll~p~----------lWe~~gniPalvrLL~a~i~k~~~~i~~~--~~l~~iLgvF 207 (435)
T PF03378_consen 141 LAQLLELRPSS-PLPDAYKQLFPPLLSPA----------LWERRGNIPALVRLLQAYIKKDPSFIVAN--NQLEPILGVF 207 (435)
T ss_dssp HHHHHHHSS---S--TTTGGGHHHHTSGG----------GGGSTTTHHHHHHHHHHHHHHHGGG------S-CHHHHHHH
T ss_pred HHHHHHcCCCC-CCcHHHHHHHHHHcCcc----------hhccCCCcCcHHHHHHHHHHhCchhhcch--hhHHHHHHHH
Confidence 99999877622 22223333333333332 12445667799999999999999998654 4566655543
Q ss_pred HHhhc--cCchhHHHHHHHHHHHHHhh
Q 002370 829 AICCT--AMHRGAALAAMSYLSCFLEE 853 (930)
Q Consensus 829 l~~l~--~~e~~~~~a~~~fl~~li~~ 853 (930)
-..+. ..| ..++.++..++..
T Consensus 208 QkLi~sk~~D----~~gF~LL~~iv~~ 230 (435)
T PF03378_consen 208 QKLIASKAND----HYGFDLLESIVEN 230 (435)
T ss_dssp HHHHT-TTCH----HHHHHHHHHHHHH
T ss_pred HHHHCCCCcc----hHHHHHHHHHHHH
Confidence 33333 333 2356677777764
No 31
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=94.58 E-value=3.3 Score=46.87 Aligned_cols=246 Identities=12% Similarity=0.126 Sum_probs=130.5
Q ss_pred CccHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCchhhHH
Q 002370 565 PSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQ 644 (930)
Q Consensus 565 p~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~ 644 (930)
|...+.|..+...+.... ..+.++++++|-+++....++- ......+++-+...+..+.++. +||.-. .
T Consensus 22 p~~~~ll~~Lf~~i~~~~--s~ENeylMk~iMRvl~~~~e~~--~p~~~~il~~L~~il~~v~kNP------snP~Fn-H 90 (435)
T PF03378_consen 22 PFAQQLLQNLFALIEKPG--SAENEYLMKCIMRVLSVLQEDI--LPIAVEILQHLTAILKEVSKNP------SNPRFN-H 90 (435)
T ss_dssp CCHHHHHHHHHHHHHTT---STC-HHHHHHHHHHHHHSTTTT--GGGHHHHHHHHHHHHHHHHTS---------HHHH-H
T ss_pred hhHHHHHHHHHHHHhcCC--CccchHHHHHHHHHHHHhHHHH--HHHHHHHHHHHHHHHHHHHhCC------CCcchh-h
Confidence 444455666666654322 2668899999999998766532 3334555555556665555543 233211 1
Q ss_pred HHHHhHHHHHhhhcccccccccCCCCCCCCchHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHhh-----h
Q 002370 645 ILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSG-----Q 719 (930)
Q Consensus 645 ~l~~~~~~l~~l~~i~~~l~~~~~~~~~~~~p~~~~~~~i~~~l~~i~~~~~~~~~~v~e~~c~~~~~~i~~l~-----~ 719 (930)
-..+.++.++|....+ .++-+...-+.+||.+..++++ +-.|.+.-+..++..++.... +
T Consensus 91 ------ylFEsi~~lir~~~~~------~~~~v~~~E~~L~P~f~~ILq~---dV~EF~PYvfQIla~Lle~~~~~~~p~ 155 (435)
T PF03378_consen 91 ------YLFESIGALIRFVCEA------DPEAVSQFEEALFPPFQEILQQ---DVQEFIPYVFQILAQLLELRPSSPLPD 155 (435)
T ss_dssp ------HHHHHHHHHHHHS-GG------GHH---HHHHHHHHHHHHHHHT---T-TTTHHHHHHHHHHHHHHSS--S--T
T ss_pred ------hHHHHHHHHHHhccCC------ChhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHcCCCCCCcH
Confidence 1345556666653210 0111334557889999999974 224566667777777666544 2
Q ss_pred hhHhhHHHHHHHHHHhhhhhCCcchHHHHHHHHHHHhcCCCCccchHHHHHHHHhhhHHHHHhhcCCCCCCCCchHHHHH
Q 002370 720 HFVTLLPQVLDCLSTNFVSFQNHECYIRTASVVIEEFGHKDEYGPLFVTTFERFSQAASVRALNSSYICDQEPDLVEAYT 799 (930)
Q Consensus 720 ~~~p~l~~l~~~l~~~~~~~~~~~~~L~l~~~li~~fg~~~~~~~~l~~l~~~l~~~~~~~~l~~~~~~~~~pD~~~~~f 799 (930)
....++|+++.-. .+......+....+++..+.+-+..-.-.+.+..+++- ++.+.+. ...| ..-|
T Consensus 156 ~y~~L~~~Ll~p~--lWe~~gniPalvrLL~a~i~k~~~~i~~~~~l~~iLgv------FQkLi~s----k~~D--~~gF 221 (435)
T PF03378_consen 156 AYKQLFPPLLSPA--LWERRGNIPALVRLLQAYIKKDPSFIVANNQLEPILGV------FQKLIAS----KAND--HYGF 221 (435)
T ss_dssp TTGGGHHHHTSGG--GGGSTTTHHHHHHHHHHHHHHHGGG----S-CHHHHHH------HHHHHT-----TTCH--HHHH
T ss_pred HHHHHHHHHcCcc--hhccCCCcCcHHHHHHHHHHhCchhhcchhhHHHHHHH------HHHHHCC----CCcc--hHHH
Confidence 2344555554322 23222234556677888777655421111233444432 2333221 1122 5678
Q ss_pred HHHHHHHhhhhHHHHhhchhchHHHHHHHHHhhccC-chhHHHHHHHHHHHHHhh
Q 002370 800 NFASTFVRTSRKEVLAASGALLEVSFQKAAICCTAM-HRGAALAAMSYLSCFLEE 853 (930)
Q Consensus 800 ~l~~~~l~~~p~~~~~s~~~~l~~~l~~~l~~l~~~-e~~~~~a~~~fl~~li~~ 853 (930)
.++..++.++|...+. +++..++...+.=++.. -..-++..+.|++-++..
T Consensus 222 ~LL~~iv~~~p~~~l~---~yl~~I~~lll~RLq~skT~kf~~~fv~F~~~~~~~ 273 (435)
T PF03378_consen 222 DLLESIVENLPPEALE---PYLKQIFTLLLTRLQSSKTEKFVKRFVVFLSLFAIK 273 (435)
T ss_dssp HHHHHHHHHS-HHHHG---GGHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHH---HHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHH
Confidence 9999999999997765 46788877766555533 223355566666655443
No 32
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=93.50 E-value=2.6 Score=40.77 Aligned_cols=112 Identities=9% Similarity=-0.002 Sum_probs=83.3
Q ss_pred CCCchHHHHHHHHHHHHhhh-hHHHHhhchhchHHHHHHHHHhhccCc-hhHHHHHHHHHHHHHhhhhhhccCCCCCCCC
Q 002370 790 QEPDLVEAYTNFASTFVRTS-RKEVLAASGALLEVSFQKAAICCTAMH-RGAALAAMSYLSCFLEECLASLLGYTTSIPE 867 (930)
Q Consensus 790 ~~pD~~~~~f~l~~~~l~~~-p~~~~~s~~~~l~~~l~~~l~~l~~~e-~~~~~a~~~fl~~li~~~~~~~~~~~~~~~~ 867 (930)
.+|+-+-.-..|+...++.| |..|.....+++..++ .-++.++ +.+.++++..++.++....+ +.
T Consensus 37 ~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll----~~L~~~~~~~~~~~ai~~L~~l~~~~~~-----~p---- 103 (165)
T PF08167_consen 37 KSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALL----SILEKPDPPSVLEAAIITLTRLFDLIRG-----KP---- 103 (165)
T ss_pred CChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH----HHHcCCCCHHHHHHHHHHHHHHHHHhcC-----CC----
Confidence 45777778889999999999 6666565444555443 3444444 45588889999999987553 21
Q ss_pred ccHHHHHHHHHHhhhHHHHHHHHHHhcccccccchhhhhHHHHHHHhhcCC--CCc
Q 002370 868 GSFNAMAIQVISHSGEGLVSNVVYALLGVSAMSRIHSGGSCFQKKRSQVCN--NPA 921 (930)
Q Consensus 868 ~~~~~~~~~~l~~~G~~lv~~ll~~~~g~~prs~~~~~~~~L~~l~~~~~~--~~~ 921 (930)
+-.+++..++.+.++..++.-+.+ -+..+..-+.|..++.+||+ +|-
T Consensus 104 ----~l~Rei~tp~l~~~i~~ll~l~~~---~~~~~~~l~~L~~ll~~~ptt~rp~ 152 (165)
T PF08167_consen 104 ----TLTREIATPNLPKFIQSLLQLLQD---SSCPETALDALATLLPHHPTTFRPF 152 (165)
T ss_pred ----chHHHHhhccHHHHHHHHHHHHhc---cccHHHHHHHHHHHHHHCCccccch
Confidence 346788899999999999987775 56777788999999999999 774
No 33
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=93.33 E-value=21 Score=41.99 Aligned_cols=426 Identities=16% Similarity=0.127 Sum_probs=211.0
Q ss_pred cCCChHHHHHHHHHHHHhhcC-hHHHHHHHHhhccCCCCCCccchhHHhhhHHhHHHhccCcCCCChHHHHHHHHHHHHH
Q 002370 18 HDTESCNRVAANQWLVQFQQT-DAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKDALLNALLVA 96 (930)
Q Consensus 18 ~~~d~~~~~~A~~~L~~fq~s-~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~ki~~~~~~l~~e~~~~lr~~Ll~~ 96 (930)
.+.|...|+-+.=++..+-.. ++....+..-+..+= .+.++.+|-.|..++-+-. +++..+.+-..+...
T Consensus 52 ~s~~~~~Krl~yl~l~~~~~~~~~~~~l~~n~l~kdl--~~~n~~~~~lAL~~l~~i~-------~~~~~~~l~~~v~~l 122 (526)
T PF01602_consen 52 SSKDLELKRLGYLYLSLYLHEDPELLILIINSLQKDL--NSPNPYIRGLALRTLSNIR-------TPEMAEPLIPDVIKL 122 (526)
T ss_dssp SSSSHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHH--CSSSHHHHHHHHHHHHHH--------SHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhh--cCCCHHHHHHHHhhhhhhc-------ccchhhHHHHHHHHH
Confidence 356788899999998886665 554555555554331 1346688888888886633 456666776667666
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHhcc-cCc-hHHHHHHHhhcccCCCchhHHHHHHHhhhhcccccccccccCCCHHH
Q 002370 97 AKRFSSGPPQLLTQICLALSALILRAVE-HGK-PIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDSQASDCNISSAH 174 (930)
Q Consensus 97 l~~~~~~~~~v~~kL~~~La~l~~~~~~-W~~-~i~~li~~~~~~~~~~~~~~~~L~iL~~l~EE~~~~~~~~~~l~~~~ 174 (930)
+. ..++.||++.+.++..++...++ -+. +++.+...+... ++......+.++..+ ... +..
T Consensus 123 l~---~~~~~VRk~A~~~l~~i~~~~p~~~~~~~~~~l~~lL~d~--~~~V~~~a~~~l~~i--~~~----------~~~ 185 (526)
T PF01602_consen 123 LS---DPSPYVRKKAALALLKIYRKDPDLVEDELIPKLKQLLSDK--DPSVVSAALSLLSEI--KCN----------DDS 185 (526)
T ss_dssp HH---SSSHHHHHHHHHHHHHHHHHCHCCHHGGHHHHHHHHTTHS--SHHHHHHHHHHHHHH--HCT----------HHH
T ss_pred hc---CCchHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhccCC--cchhHHHHHHHHHHH--ccC----------cch
Confidence 65 45679999999999999987652 122 567777777542 333344555555555 110 000
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHhhccCCCCCcchhhhHHHHHHHHHHHHHhccccccCcchhcccchHHHHHHhcCC--
Q 002370 175 RSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSLQV-- 252 (930)
Q Consensus 175 r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~c~~sWi~~~~~~~~~~~~i~~~~ll~~l~~~L~~-- 252 (930)
. ....+.++..+.+.+.. +++-....+++++..+.+.. ...-....+++.+...+.+
T Consensus 186 ~-------~~~~~~~~~~L~~~l~~--------~~~~~q~~il~~l~~~~~~~------~~~~~~~~~i~~l~~~l~s~~ 244 (526)
T PF01602_consen 186 Y-------KSLIPKLIRILCQLLSD--------PDPWLQIKILRLLRRYAPME------PEDADKNRIIEPLLNLLQSSS 244 (526)
T ss_dssp H-------TTHHHHHHHHHHHHHTC--------CSHHHHHHHHHHHTTSTSSS------HHHHHHHHHHHHHHHHHHHHH
T ss_pred h-------hhhHHHHHHHhhhcccc--------cchHHHHHHHHHHHhcccCC------hhhhhHHHHHHHHHHHhhccc
Confidence 0 01123333333333322 23345566677776554421 1110003456666655542
Q ss_pred CCcHHHHHHHHHHHHhccCChhHHHHhhhhhhHHhhhchhhccCcHhHHhhHHHHHHHHHHhhhHHHHhcChhHHHHHHH
Q 002370 253 QSSFDVAIEVLVELVGRHEGLPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMSEIGQAAPSLIVEASPEALALADA 332 (930)
Q Consensus 253 ~~~~~~a~~~l~ei~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~d~d~~~~l~~l~~~~~e~~~~~l~~~~~~~~~ll~~ 332 (930)
+.+.-.|+.++..+.... ...+..++.+.. .+.+.|.+..--..+.+..++..+.+.+. -...
T Consensus 245 ~~V~~e~~~~i~~l~~~~-~~~~~~~~~L~~--------lL~s~~~nvr~~~L~~L~~l~~~~~~~v~--------~~~~ 307 (526)
T PF01602_consen 245 PSVVYEAIRLIIKLSPSP-ELLQKAINPLIK--------LLSSSDPNVRYIALDSLSQLAQSNPPAVF--------NQSL 307 (526)
T ss_dssp HHHHHHHHHHHHHHSSSH-HHHHHHHHHHHH--------HHTSSSHHHHHHHHHHHHHHCCHCHHHHG--------THHH
T ss_pred cHHHHHHHHHHHHhhcch-HHHHhhHHHHHH--------HhhcccchhehhHHHHHHHhhcccchhhh--------hhhh
Confidence 222223333333222111 111222222211 22344444333333444444444422222 1111
Q ss_pred HHhcccCCCCCchhhhhcHHHHHHHHHHhhccchhhhhhhhhhhhhcHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCch
Q 002370 333 LLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFNDDGMVDLPDG 412 (930)
Q Consensus 333 ll~~~~~p~~d~~v~~~~~~fW~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Ll~~l~~k~~~p~~~~~~~~~~d~~d~ 412 (930)
.+.+..+ ..|..+...+++--+.+.+. .... .++..+..-+. +. .
T Consensus 308 ~~~~l~~-~~d~~Ir~~~l~lL~~l~~~----------------~n~~----~Il~eL~~~l~-~~------~------- 352 (526)
T PF01602_consen 308 ILFFLLY-DDDPSIRKKALDLLYKLANE----------------SNVK----EILDELLKYLS-EL------S------- 352 (526)
T ss_dssp HHHHHHC-SSSHHHHHHHHHHHHHH--H----------------HHHH----HHHHHHHHHHH-HC--------------
T ss_pred hhheecC-CCChhHHHHHHHHHhhcccc----------------cchh----hHHHHHHHHHH-hc------c-------
Confidence 1122221 11455766777665555432 0112 23333333331 00 0
Q ss_pred HHHHHHHHHHHHHHHHHhcCc--hHHHHHHHHhhhcCCCCCCCchhhhHHHHHHHhhhhccccCCCccchhHHHHHHHHh
Q 002370 413 LVQFRMNLVELLVDICQLLRS--ATFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVL 490 (930)
Q Consensus 413 f~~~R~~~~d~l~~~~~~l~~--~~~l~~~~~~~~~~~~~~~~W~~~Ea~L~~l~~iae~~~~~~~~~~l~~i~~~l~~l 490 (930)
-.++|..+...+..++....+ +.++..++..+.. ....-.+.++..+..+....++ .. -..+..++..+
T Consensus 353 d~~~~~~~i~~I~~la~~~~~~~~~~v~~l~~ll~~-----~~~~~~~~~~~~i~~ll~~~~~-~~---~~~l~~L~~~l 423 (526)
T PF01602_consen 353 DPDFRRELIKAIGDLAEKFPPDAEWYVDTLLKLLEI-----SGDYVSNEIINVIRDLLSNNPE-LR---EKILKKLIELL 423 (526)
T ss_dssp -HHHHHHHHHHHHHHHHHHGSSHHHHHHHHHHHHHC-----TGGGCHCHHHHHHHHHHHHSTT-TH---HHHHHHHHHHH
T ss_pred chhhhhhHHHHHHHHHhccCchHHHHHHHHHHhhhh-----ccccccchHHHHHHHHhhcChh-hh---HHHHHHHHHHH
Confidence 013777777777777665433 3356555554432 1123345556666665544332 11 12233344444
Q ss_pred ccCchhhhhhHHHHHHHHHHHHHHhhHHHHHhchhchHHHHHHHHHhcc--ccchhHHHHHHHHHHHHHhh
Q 002370 491 SASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGIS--EAVSSNACASALRKICEDAS 559 (930)
Q Consensus 491 ~~~~~~~~~~~~~v~~~t~~~~ig~y~~wl~~~p~~L~~vl~~l~~~l~--~p~v~~~Aa~al~~lc~~c~ 559 (930)
.+...+. ++. +++|++|.|++.+.. .+..+.++..+...+. ++.++...-.++.++.....
T Consensus 424 ~~~~~~~------~~~-~~~wilGEy~~~~~~-~~~~~~~~~~l~~~~~~~~~~vk~~ilt~~~Kl~~~~~ 486 (526)
T PF01602_consen 424 EDISSPE------ALA-AAIWILGEYGELIEN-TESAPDILRSLIENFIEESPEVKLQILTALAKLFKRNP 486 (526)
T ss_dssp TSSSSHH------HHH-HHHHHHHHHCHHHTT-TTHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHSC
T ss_pred HHhhHHH------HHH-HHHhhhcccCCcccc-cccHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhCC
Confidence 4433222 334 446999999998876 1144445555554443 35588888888888886654
No 34
>PRK09687 putative lyase; Provisional
Probab=92.88 E-value=12 Score=39.66 Aligned_cols=207 Identities=15% Similarity=0.106 Sum_probs=114.5
Q ss_pred HHHHHHHhccCCChHHHHHHHHHHHHhhcChHHHHHHHHhhccCCCCCCccchhHHhhhHHhHHHhccCcCCCChHHHHH
Q 002370 9 VAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKDA 88 (930)
Q Consensus 9 v~~av~~ly~~~d~~~~~~A~~~L~~fq~s~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~ki~~~~~~l~~e~~~~ 88 (930)
+...+..| .++|...|..|...|.++. +++++..+..++.++ +..+|.+|+..|-. +.. +......
T Consensus 25 ~~~L~~~L-~d~d~~vR~~A~~aL~~~~-~~~~~~~l~~ll~~~------d~~vR~~A~~aLg~-lg~-----~~~~~~~ 90 (280)
T PRK09687 25 DDELFRLL-DDHNSLKRISSIRVLQLRG-GQDVFRLAIELCSSK------NPIERDIGADILSQ-LGM-----AKRCQDN 90 (280)
T ss_pred HHHHHHHH-hCCCHHHHHHHHHHHHhcC-cchHHHHHHHHHhCC------CHHHHHHHHHHHHh-cCC-----CccchHH
Confidence 34444445 4678889999999998765 799999999998764 46999999999965 221 1110111
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccc-CchHHHHHHHhhccc--------------CCCchhHHHHHHH
Q 002370 89 LLNALLVAAKRFSSGPPQLLTQICLALSALILRAVEH-GKPIEKLFYSLQNLQ--------------SQDNGNMAVLEML 153 (930)
Q Consensus 89 lr~~Ll~~l~~~~~~~~~v~~kL~~~La~l~~~~~~W-~~~i~~li~~~~~~~--------------~~~~~~~~~L~iL 153 (930)
.-..|...+. ......||...+.+|+.+......| +..+..+...+.... +++...+.++..|
T Consensus 91 a~~~L~~l~~--~D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~ai~~L~~~L 168 (280)
T PRK09687 91 VFNILNNLAL--EDKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDEAAIPLLINLL 168 (280)
T ss_pred HHHHHHHHHh--cCCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCHHHHHHHHHHh
Confidence 2222222222 1345678888888888775443334 344444444333210 0111222222222
Q ss_pred hhhhcccccccccccCCCHHHHHHHHHHHHh---hhhHHHHHHHHHHhhccCCCCCcchhhhHHHHHHHHHHHHHhcccc
Q 002370 154 TVLPEEVIDSQASDCNISSAHRSQYGQELLS---HTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFT 230 (930)
Q Consensus 154 ~~l~EE~~~~~~~~~~l~~~~r~~~~~~l~~---~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~c~~sWi~~~~~~ 230 (930)
+ .+ ...-|..-...|.. ..+.+.+.|...+.. ++..++..+...+..+ +
T Consensus 169 ~---d~-----------~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~D--------~~~~VR~~A~~aLg~~---~--- 220 (280)
T PRK09687 169 K---DP-----------NGDVRNWAAFALNSNKYDNPDIREAFVAMLQD--------KNEEIRIEAIIGLALR---K--- 220 (280)
T ss_pred c---CC-----------CHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcC--------CChHHHHHHHHHHHcc---C---
Confidence 2 10 11234444444443 245666666666543 2345777776665442 1
Q ss_pred ccCcchhcccchHHHHHHhcCCCCcHHHHHHHHHHHH
Q 002370 231 EISQGSLAAHPLLNFVFNSLQVQSSFDVAIEVLVELV 267 (930)
Q Consensus 231 ~~~~~~i~~~~ll~~l~~~L~~~~~~~~a~~~l~ei~ 267 (930)
....++.+++.|.++.++..|++.+-++=
T Consensus 221 --------~~~av~~Li~~L~~~~~~~~a~~ALg~ig 249 (280)
T PRK09687 221 --------DKRVLSVLIKELKKGTVGDLIIEAAGELG 249 (280)
T ss_pred --------ChhHHHHHHHHHcCCchHHHHHHHHHhcC
Confidence 22467777777887777766776665544
No 35
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=91.90 E-value=6 Score=42.92 Aligned_cols=170 Identities=9% Similarity=0.154 Sum_probs=104.4
Q ss_pred hhHHHHHHHHHHHHHhccccccCcchhcccchHHHHHHhc------CCCCcHH-HHHHHHHHHHhccCC----hhHHHHh
Q 002370 211 DRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSL------QVQSSFD-VAIEVLVELVGRHEG----LPQALLC 279 (930)
Q Consensus 211 ~~~~~~l~c~~sWi~~~~~~~~~~~~i~~~~ll~~l~~~L------~~~~~~~-~a~~~l~ei~~~~~~----~~~~l~~ 279 (930)
.++...|+-+..|++... +.+. ....+++.+++.+ ..|+.++ .++.++..++.+..+ ....++.
T Consensus 42 ~iKkeIL~Li~t~i~~~~----~~~~-v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~ 116 (319)
T PF08767_consen 42 TIKKEILKLIETFISKAE----DPEE-VANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILE 116 (319)
T ss_dssp HHHHHHHHHHHHHHHT-S-----HHH-HHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHhccC----CHHH-HHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 467888888899998531 1222 2333444444322 2466665 466777777776432 2223333
Q ss_pred hhhh-hHHhhhchhhccCcHhHHhhHHHHHHHHHHhhhHHHHhcCh-hHHHHHHHHHhcccCCCCCchhhhhcHHHHHHH
Q 002370 280 RVPF-LKELLLLPALTDGDEKVIGGLACLMSEIGQAAPSLIVEASP-EALALADALLSCVAFPSEDWEIADSTLQFWSTL 357 (930)
Q Consensus 280 ~~~~-l~~~~~~~~~~~~d~d~~~~l~~l~~~~~e~~~~~l~~~~~-~~~~ll~~ll~~~~~p~~d~~v~~~~~~fW~~l 357 (930)
.+.. ..+.+. .-.++-+|...++.+++-.+.+.+...+..-|+ .+..+++.++....|+ +.+|++.++..-..+
T Consensus 117 ~vf~~Tl~MI~--~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~--~~~I~~~~L~~l~~l 192 (319)
T PF08767_consen 117 AVFECTLPMIN--KDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHT--NREISETGLNILLEL 192 (319)
T ss_dssp HHHHHHHHHHS--STSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSS--SHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--hhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHH
Confidence 2221 111111 111234688899999999999999888877654 5678899999999998 799999999888888
Q ss_pred HHHhhccchhhhhhhhhhhhhcHHHHHHHHHHHHHHhc
Q 002370 358 ASYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQ 395 (930)
Q Consensus 358 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~Ll~~l~~k~~ 395 (930)
.+.....+. +....-|+.+|..++..++.-+.
T Consensus 193 l~~~~~~~~------~~~~~F~~~y~~~il~~if~vlt 224 (319)
T PF08767_consen 193 LNNVSKTNP------EFANQFYQQYYLDILQDIFSVLT 224 (319)
T ss_dssp HHHHHH-SH------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 776653111 23345567777777777666553
No 36
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=91.87 E-value=30 Score=40.29 Aligned_cols=132 Identities=11% Similarity=0.058 Sum_probs=79.4
Q ss_pred CchhhhHHHHHHHhhhhccccCCCccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHhchh----ch-
Q 002370 453 PWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQT----NA- 527 (930)
Q Consensus 453 ~W~~~Ea~L~~l~~iae~~~~~~~~~~l~~i~~~l~~l~~~~~~~~~~~~~v~~~t~~~~ig~y~~wl~~~p~----~L- 527 (930)
+=..++.++.+|..+-+......- .+.+.+.+.....||.+. ||.-+ ++.|+++.+ |++ .+
T Consensus 51 ~~e~v~~~~~iL~~~l~~~~~~~l---~~~~~~~L~~gL~h~~~~------Vr~l~-l~~l~~~~~----~~~~~~~~~~ 116 (503)
T PF10508_consen 51 NREQVELICDILKRLLSALSPDSL---LPQYQPFLQRGLTHPSPK------VRRLA-LKQLGRIAR----HSEGAAQLLV 116 (503)
T ss_pred ChHHHHHHHHHHHHHHhccCHHHH---HHHHHHHHHHHhcCCCHH------HHHHH-HHHHHHHhc----CCHHHHHHhc
Confidence 455678888888877665543221 466777777777787644 45434 577888753 222 11
Q ss_pred -HHHHHHHHHhccccc--hhHHHHHHHHHHHHHhhc--ccCCCccHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHccC
Q 002370 528 -RPLLLFLAAGISEAV--SSNACASALRKICEDASA--LIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGSV 602 (930)
Q Consensus 528 -~~vl~~l~~~l~~p~--v~~~Aa~al~~lc~~c~~--~l~~p~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~vi~~~ 602 (930)
..++..++..+.+++ ++..|+.++.++++.-.. .+..+.....|.. .+. .-+...|.++++.++.+.+.-
T Consensus 117 ~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~---l~~--~~~~~vR~Rv~el~v~i~~~S 191 (503)
T PF10508_consen 117 DNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKS---LMS--QSSDIVRCRVYELLVEIASHS 191 (503)
T ss_pred CccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHH---HHh--ccCHHHHHHHHHHHHHHHhcC
Confidence 356777778888765 899999999999852111 1111111112222 211 124567999999999987654
Q ss_pred C
Q 002370 603 S 603 (930)
Q Consensus 603 p 603 (930)
+
T Consensus 192 ~ 192 (503)
T PF10508_consen 192 P 192 (503)
T ss_pred H
Confidence 4
No 37
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=91.66 E-value=0.24 Score=32.65 Aligned_cols=29 Identities=28% Similarity=0.320 Sum_probs=23.8
Q ss_pred HHHHHHHhccccc--hhHHHHHHHHHHHHHh
Q 002370 530 LLLFLAAGISEAV--SSNACASALRKICEDA 558 (930)
Q Consensus 530 vl~~l~~~l~~p~--v~~~Aa~al~~lc~~c 558 (930)
+++.+++.+.||. |+.+|+.+|..+++.|
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~~ 31 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEHC 31 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHTS
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhhC
Confidence 4678888888754 9999999999999876
No 38
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=89.75 E-value=48 Score=38.93 Aligned_cols=108 Identities=13% Similarity=-0.046 Sum_probs=64.0
Q ss_pred hHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHhchhchHH-HHHHHHHhccc--cchhHHHHHHHHHHHHH
Q 002370 481 SVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARP-LLLFLAAGISE--AVSSNACASALRKICED 557 (930)
Q Consensus 481 ~~i~~~l~~l~~~~~~~~~~~~~v~~~t~~~~ig~y~~wl~~~p~~L~~-vl~~l~~~l~~--p~v~~~Aa~al~~lc~~ 557 (930)
+.+.+.+..+..++.+. ||.+++ .++.+.. ...|+.++. .++.+.+.+.+ |.|..+|..++..+ +
T Consensus 113 ~~l~~~v~~ll~~~~~~------VRk~A~-~~l~~i~---~~~p~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i--~ 180 (526)
T PF01602_consen 113 EPLIPDVIKLLSDPSPY------VRKKAA-LALLKIY---RKDPDLVEDELIPKLKQLLSDKDPSVVSAALSLLSEI--K 180 (526)
T ss_dssp HHHHHHHHHHHHSSSHH------HHHHHH-HHHHHHH---HHCHCCHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH--H
T ss_pred hHHHHHHHHHhcCCchH------HHHHHH-HHHHHHh---ccCHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHH--c
Confidence 55666666666676542 566553 4555443 458888877 68888888875 45888888888888 3
Q ss_pred hhcccCCCccHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHccC
Q 002370 558 ASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGSV 602 (930)
Q Consensus 558 c~~~l~~p~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~vi~~~ 602 (930)
|...... ...+.+......+. ...++..+..+++.+..+...-
T Consensus 181 ~~~~~~~-~~~~~~~~~L~~~l-~~~~~~~q~~il~~l~~~~~~~ 223 (526)
T PF01602_consen 181 CNDDSYK-SLIPKLIRILCQLL-SDPDPWLQIKILRLLRRYAPME 223 (526)
T ss_dssp CTHHHHT-THHHHHHHHHHHHH-TCCSHHHHHHHHHHHTTSTSSS
T ss_pred cCcchhh-hhHHHHHHHhhhcc-cccchHHHHHHHHHHHhcccCC
Confidence 4332210 12333333222211 3456777788887777665433
No 39
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=89.24 E-value=60 Score=39.42 Aligned_cols=288 Identities=14% Similarity=0.129 Sum_probs=142.7
Q ss_pred CccchhHHhhhHHhHHHhccCcCCCChHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhc--ccCchHHHHHH
Q 002370 57 LTDFEVEFFAAQILKRKIQNEGYYLQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRAV--EHGKPIEKLFY 134 (930)
Q Consensus 57 ~~~~~v~ffaA~tL~~ki~~~~~~l~~e~~~~lr~~Ll~~l~~~~~~~~~v~~kL~~~La~l~~~~~--~W~~~i~~li~ 134 (930)
+.+-..||+|..=|-+.++++--.|..|.-..+-.-|++.|. ..+.-|.|--.-+++-++-+.. .-..-++.+..
T Consensus 16 ssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~---D~ngEVQnlAVKClg~lvsKvke~~le~~ve~L~~ 92 (1233)
T KOG1824|consen 16 SSDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLE---DKNGEVQNLAVKCLGPLVSKVKEDQLETIVENLCS 92 (1233)
T ss_pred CCCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHh---ccCcHHHHHHHHHHHHHHhhchHHHHHHHHHHHhh
Confidence 345689999999999999999888888777777777777665 3344566666667777775554 22334444444
Q ss_pred HhhcccCCCchhH-HHHHHHhhhhcccccccccccCCCHHHHHHHHHHHHhhhhHHHHHHHHHHhhccCCCCCcchhhhH
Q 002370 135 SLQNLQSQDNGNM-AVLEMLTVLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRN 213 (930)
Q Consensus 135 ~~~~~~~~~~~~~-~~L~iL~~l~EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~ 213 (930)
.+-++. ...+. ..+.+.+++.+ +..+.. ..++.+ -++.+...+.+.+.... +...++
T Consensus 93 ~~~s~k--eq~rdissi~Lktvi~n-l~P~~~--~~la~t-----------V~~~~t~~l~~~i~~qe------~~sai~ 150 (1233)
T KOG1824|consen 93 NMLSGK--EQLRDISSIGLKTVIAN-LPPSSS--SFLAAT-----------VCKRITPKLKQAISKQE------DVSAIK 150 (1233)
T ss_pred hhccch--hhhccHHHHHHHHHHhc-CCCccc--cccccH-----------HHHHHHHHHHHHhhhcc------cchhhH
Confidence 432211 11111 12222222221 110000 001111 11222222322222211 223466
Q ss_pred HHHHHHHHHHH-HhccccccCcchhcccchHHHHHHhcCCC--CcHHHHHHHHHHHHhccC-ChhHHHHhhhhh-hHHhh
Q 002370 214 RKILRCLLSWV-RAGCFTEISQGSLAAHPLLNFVFNSLQVQ--SSFDVAIEVLVELVGRHE-GLPQALLCRVPF-LKELL 288 (930)
Q Consensus 214 ~~~l~c~~sWi-~~~~~~~~~~~~i~~~~ll~~l~~~L~~~--~~~~~a~~~l~ei~~~~~-~~~~~l~~~~~~-l~~~~ 288 (930)
-.+++-+.-.+ ++| ++-++ ....++..+...|..+ .++-.|+-++..+..... +....++..++. +.+
T Consensus 151 ~e~lDil~d~lsr~g---~ll~~--fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~ly~~li~~Ll~~L~~-- 223 (1233)
T KOG1824|consen 151 CEVLDILADVLSRFG---TLLPN--FHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRDLYVELIEHLLKGLSN-- 223 (1233)
T ss_pred HHHHHHHHHHHHhhc---ccCcc--hHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC--
Confidence 66777666655 444 11111 1223444555555544 335667777777665443 222223322211 111
Q ss_pred hchhhccCcHhHHhhHHHHHHHHHHhhhHHHHhcChhHHHHHHHHHhcccC-CCCCchhhhhcHHHHHHHHHHhhccchh
Q 002370 289 LLPALTDGDEKVIGGLACLMSEIGQAAPSLIVEASPEALALADALLSCVAF-PSEDWEIADSTLQFWSTLASYILGLDAS 367 (930)
Q Consensus 289 ~~~~~~~~d~d~~~~l~~l~~~~~e~~~~~l~~~~~~~~~ll~~ll~~~~~-p~~d~~v~~~~~~fW~~l~~~l~~~~~~ 367 (930)
.......+.+.+.+.+++..-=.-+.+ +...++.++..++.. ...|+|..+.+++-...|...
T Consensus 224 ------~~q~~~~rt~Iq~l~~i~r~ag~r~~~---h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~r------- 287 (1233)
T KOG1824|consen 224 ------RTQMSATRTYIQCLAAICRQAGHRFGS---HLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRR------- 287 (1233)
T ss_pred ------CCchHHHHHHHHHHHHHHHHhcchhhc---ccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHh-------
Confidence 122334444555555554332222222 233566666666522 112566777666554444332
Q ss_pred hhhhhhhhhhhcHHHHHHHHHHHHHHhccCCC
Q 002370 368 IAKNKKHVEDMFFSVFSALLDALLLRAQVDES 399 (930)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~Ll~~l~~k~~~p~~ 399 (930)
......|+...++..++.++.|++.
T Consensus 288 -------cp~ei~p~~pei~~l~l~yisYDPN 312 (1233)
T KOG1824|consen 288 -------CPKEILPHVPEIINLCLSYISYDPN 312 (1233)
T ss_pred -------ChhhhcccchHHHHHHHHHhccCCC
Confidence 1124566777888999999999875
No 40
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=87.59 E-value=2.7 Score=36.45 Aligned_cols=89 Identities=12% Similarity=0.078 Sum_probs=59.8
Q ss_pred hhHHHHHHHhhhhccccCCCccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHh-chhchHHHHHHHH
Q 002370 457 VETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISA-FQTNARPLLLFLA 535 (930)
Q Consensus 457 ~Ea~L~~l~~iae~~~~~~~~~~l~~i~~~l~~l~~~~~~~~~~~~~v~~~t~~~~ig~y~~wl~~-~p~~L~~vl~~l~ 535 (930)
.-++|.++.+++.++.+.-. ..++.|++.+.....++..+ ||+.+ |+.+...+..... .-.++..+++.+.
T Consensus 3 R~ggli~Laa~ai~l~~~~~-~~l~~Il~pVL~~~~D~d~r------VRy~A-cEaL~ni~k~~~~~~l~~f~~IF~~L~ 74 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDIS-KYLDEILPPVLKCFDDQDSR------VRYYA-CEALYNISKVARGEILPYFNEIFDALC 74 (97)
T ss_pred hhHHHHHHHHHHHHchHhHH-HHHHHHHHHHHHHcCCCcHH------HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35789999999988875422 23566666555556665544 78866 6999999887653 2246788888888
Q ss_pred Hhccccc--hhHHHHHHHHHH
Q 002370 536 AGISEAV--SSNACASALRKI 554 (930)
Q Consensus 536 ~~l~~p~--v~~~Aa~al~~l 554 (930)
+.+.+|+ |+..| ..+-++
T Consensus 75 kl~~D~d~~Vr~~a-~~Ld~l 94 (97)
T PF12755_consen 75 KLSADPDENVRSAA-ELLDRL 94 (97)
T ss_pred HHHcCCchhHHHHH-HHHHHH
Confidence 8888765 55554 444443
No 41
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=87.36 E-value=11 Score=38.52 Aligned_cols=138 Identities=17% Similarity=0.137 Sum_probs=79.5
Q ss_pred CCCchhhhHHHHHHHhhhhccccCCCccchhHHHHHHH----Hhc-cCchhhhhhHHHHHHHHHHHHHHhhHHHHHhch-
Q 002370 451 PIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVA----VLS-ASRSEELKGFMHIVYRSLADVIGSYSKWISAFQ- 524 (930)
Q Consensus 451 ~~~W~~~Ea~L~~l~~iae~~~~~~~~~~l~~i~~~l~----~l~-~~~~~~~~~~~~v~~~t~~~~ig~y~~wl~~~p- 524 (930)
+.+|.....++--+..+..+-..... .+.+++.+. .+. .....+. .|.. ++|.+++..+.-+..+-
T Consensus 18 ~~~W~~r~~al~~L~~l~~~~~~~~~---~~~~~~~l~~~~~~i~~~l~d~Rs----~v~~-~A~~~l~~l~~~l~~~~~ 89 (228)
T PF12348_consen 18 ESDWEERVEALQKLRSLIKGNAPEDF---PPDFVECLRQLLDAIIKQLSDLRS----KVSK-TACQLLSDLARQLGSHFE 89 (228)
T ss_dssp -SSHHHHHHHHHHHHHHHHH-B--------HHHHHHHH---HHHHH-S-HH-------HHH-HHHHHHHHHHHHHGGGGH
T ss_pred ccCHHHHHHHHHHHHHHHHcCCcccc---HHHHHHHHHHhHHHHHHHHhhhHH----HHHH-HHHHHHHHHHHHHhHhHH
Confidence 56799999999999988655421111 233333333 221 1111111 1333 44689999988877663
Q ss_pred hchHHHHHHHHHhccccc--hhHHHHHHHHHHHHHhhcccCCCccHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHccC
Q 002370 525 TNARPLLLFLAAGISEAV--SSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGSV 602 (930)
Q Consensus 525 ~~L~~vl~~l~~~l~~p~--v~~~Aa~al~~lc~~c~~~l~~p~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~vi~~~ 602 (930)
.+++.+++.++..+.++. ++.+|..++..+|+.|.. . + ..+........ ..-+...|....+.+..++...
T Consensus 90 ~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~--~-~---~~~~~~l~~~~-~~Kn~~vR~~~~~~l~~~l~~~ 162 (228)
T PF12348_consen 90 PYADILLPPLLKKLGDSKKFIREAANNALDAIIESCSY--S-P---KILLEILSQGL-KSKNPQVREECAEWLAIILEKW 162 (228)
T ss_dssp HHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--------HHHHHHHHHHT-T-S-HHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCc--H-H---HHHHHHHHHHH-hCCCHHHHHHHHHHHHHHHHHc
Confidence 367788888888888754 889999999999998871 0 1 11122222111 1235778999999999999988
Q ss_pred C
Q 002370 603 S 603 (930)
Q Consensus 603 p 603 (930)
+
T Consensus 163 ~ 163 (228)
T PF12348_consen 163 G 163 (228)
T ss_dssp -
T ss_pred c
Confidence 8
No 42
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=86.79 E-value=82 Score=38.14 Aligned_cols=124 Identities=15% Similarity=0.136 Sum_probs=75.7
Q ss_pred CCCCchHHHHHHHHHHHHhhhhHHHHhhchhchHHHHHHHHHhh-ccCchhHHHHHHHHHHHHHhhhhhhccCCCCCCCC
Q 002370 789 DQEPDLVEAYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICC-TAMHRGAALAAMSYLSCFLEECLASLLGYTTSIPE 867 (930)
Q Consensus 789 ~~~pD~~~~~f~l~~~~l~~~p~~~~~s~~~~l~~~l~~~l~~l-~~~e~~~~~a~~~fl~~li~~~~~~~~~~~~~~~~ 867 (930)
..++....--..++..++|+.|.-+-. ......|.-...+. -..+.+....+...|..+++.+.....+-.+.|..
T Consensus 628 ~~~~~l~~~aidvLttvvr~tp~pL~~---~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~eq~~t~~~e~g~ 704 (1005)
T KOG2274|consen 628 KAPAGLCAIAIDVLTTVLRNTPSPLPN---LLICYAFPAVAKITLHSDDHETLQNATECLRALISVTLEQLLTWHDEPGH 704 (1005)
T ss_pred ccCchhhHHHHHHHHHHHhcCCCCccH---HHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCHHHHHhhccCCCc
Confidence 344667777788899999998766332 23444444333333 24578889999999999999866543322222221
Q ss_pred c--cHHHHHHHHH----HhhhHHHHHHHHHHhcccccccchhhhhHHHHHHHhh
Q 002370 868 G--SFNAMAIQVI----SHSGEGLVSNVVYALLGVSAMSRIHSGGSCFQKKRSQ 915 (930)
Q Consensus 868 ~--~~~~~~~~~l----~~~G~~lv~~ll~~~~g~~prs~~~~~~~~L~~l~~~ 915 (930)
. .....+.+++ ...+...|-.++..+..+++|..=+++.-+|++.++|
T Consensus 705 ~~~yImqV~sqLLdp~~sds~a~~VG~lV~tLit~a~~el~~n~d~IL~Avisr 758 (1005)
T KOG2274|consen 705 NLWYIMQVLSQLLDPETSDSAAAFVGPLVLTLITHASSELGPNLDQILRAVISR 758 (1005)
T ss_pred cHHHHHHHHHHHcCCccchhHHHHHhHHHHHHHHHHHHHhchhHHHHHHHHHHH
Confidence 2 2234444554 2445556666666666677777777777777776665
No 43
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=86.45 E-value=2.2 Score=36.97 Aligned_cols=40 Identities=15% Similarity=0.018 Sum_probs=34.7
Q ss_pred hhchHHHHHHHHHhcccc--chhHHHHHHHHHHHHHhhcccC
Q 002370 524 QTNARPLLLFLAAGISEA--VSSNACASALRKICEDASALID 563 (930)
Q Consensus 524 p~~L~~vl~~l~~~l~~p--~v~~~Aa~al~~lc~~c~~~l~ 563 (930)
.+|++.+++-++.++.++ +|+-.|+.+|.++++.++..+.
T Consensus 22 ~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l 63 (97)
T PF12755_consen 22 SKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEIL 63 (97)
T ss_pred HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568899999999999975 4999999999999999987553
No 44
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=85.77 E-value=69 Score=36.31 Aligned_cols=58 Identities=19% Similarity=0.209 Sum_probs=51.0
Q ss_pred chHHHHHHHHHHHHhhhhHHHHhhchhchHHHHHHHHHhhccCchhHHHHHHHHHHHHHhh
Q 002370 793 DLVEAYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICCTAMHRGAALAAMSYLSCFLEE 853 (930)
Q Consensus 793 D~~~~~f~l~~~~l~~~p~~~~~s~~~~l~~~l~~~l~~l~~~e~~~~~a~~~fl~~li~~ 853 (930)
+....|+.-+..++++.|..++.. .++.++...+.++..++.+...++++-+..++.-
T Consensus 338 ~~k~~yL~ALs~ll~~vP~~vl~~---~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~ 395 (415)
T PF12460_consen 338 EIKSNYLTALSHLLKNVPKSVLLP---ELPTLLPLLLQSLSLPDADVLLSSLETLKMILEE 395 (415)
T ss_pred hhHHHHHHHHHHHHhhCCHHHHHH---HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHc
Confidence 377889999999999999988864 5888999999999999999999999999888864
No 45
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.71 E-value=41 Score=38.40 Aligned_cols=270 Identities=16% Similarity=0.166 Sum_probs=134.0
Q ss_pred HHHHHHhcc---ccchhHHHHHHHHHHHHHhhc---ccCCCccHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHccCCc
Q 002370 531 LLFLAAGIS---EAVSSNACASALRKICEDASA---LIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGSVSN 604 (930)
Q Consensus 531 l~~l~~~l~---~p~v~~~Aa~al~~lc~~c~~---~l~~p~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~vi~~~p~ 604 (930)
++-++.++. +|.++-.||.|+.+++..-.. ........+.|..+... -+.+.++..+=|+|.|+.--|.
T Consensus 111 v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s-----~~~~v~eQavWALgNIagds~~ 185 (514)
T KOG0166|consen 111 VPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSS-----PSADVREQAVWALGNIAGDSPD 185 (514)
T ss_pred HHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcC-----CcHHHHHHHHHHHhccccCChH
Confidence 344444443 377899999999999964432 22222356666665542 2466788899999999877665
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCchhhHHHHHHhHHHHHhhhcccccccccCCCCCCCCchHHHHHHHH
Q 002370 605 KELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVF 684 (930)
Q Consensus 605 ~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~l~~i~~~l~~~~~~~~~~~~p~~~~~~~i 684 (930)
-+. .-.=...+.|++..+.. . .+- .-+..+.. .|+.+.++-+ ++|.....+.+
T Consensus 186 ~Rd-~vl~~g~l~pLl~~l~~----~-------~~~---~~lRn~tW---~LsNlcrgk~---------P~P~~~~v~~i 238 (514)
T KOG0166|consen 186 CRD-YVLSCGALDPLLRLLNK----S-------DKL---SMLRNATW---TLSNLCRGKN---------PSPPFDVVAPI 238 (514)
T ss_pred HHH-HHHhhcchHHHHHHhcc----c-------cch---HHHHHHHH---HHHHHHcCCC---------CCCcHHHHHHH
Confidence 332 11112244454443222 1 000 00111112 2223334322 35667788889
Q ss_pred HHHHHHHHHhhhccchHHHHHHHHHHHHHHHHhhhhhH-----hhHHHHHHHHHHhhhhhCCcchHHHHHHHHHHHhcCC
Q 002370 685 WPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQHFV-----TLLPQVLDCLSTNFVSFQNHECYIRTASVVIEEFGHK 759 (930)
Q Consensus 685 ~~~l~~i~~~~~~~~~~v~e~~c~~~~~~i~~l~~~~~-----p~l~~l~~~l~~~~~~~~~~~~~L~l~~~li~~fg~~ 759 (930)
+|++...+ +..|.+|..-+|-.++....-..+... ..+|.+++.+... ... -....|....-++. |++
T Consensus 239 Lp~L~~ll---~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~-~~~-v~~PaLRaiGNIvt--G~d 311 (514)
T KOG0166|consen 239 LPALLRLL---HSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHS-SPK-VVTPALRAIGNIVT--GSD 311 (514)
T ss_pred HHHHHHHH---hcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCC-Ccc-cccHHHhhccceee--ccH
Confidence 99999887 447899998888888875543222211 2344555544321 000 01112333333322 443
Q ss_pred CCccchHHH-HHHHHhhhHHHHHhhcCCCCCCCCc-hHHHHHHHHHHHHhhhhHHHHhhchhchHHHHHHHHHhhccCch
Q 002370 760 DEYGPLFVT-TFERFSQAASVRALNSSYICDQEPD-LVEAYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICCTAMHR 837 (930)
Q Consensus 760 ~~~~~~l~~-l~~~l~~~~~~~~l~~~~~~~~~pD-~~~~~f~l~~~~l~~~p~~~~~s~~~~l~~~l~~~l~~l~~~e~ 837 (930)
......+.. .+.. +..+.+ ..+.+ +.++..=.++.+..-++..+-.- +-..++...+..+...|.
T Consensus 312 ~QTq~vi~~~~L~~------l~~ll~----~s~~~~ikkEAcW~iSNItAG~~~qiqaV---ida~l~p~Li~~l~~~ef 378 (514)
T KOG0166|consen 312 EQTQVVINSGALPV------LSNLLS----SSPKESIKKEACWTISNITAGNQEQIQAV---IDANLIPVLINLLQTAEF 378 (514)
T ss_pred HHHHHHHhcChHHH------HHHHhc----cCcchhHHHHHHHHHHHhhcCCHHHHHHH---HHcccHHHHHHHHhccch
Confidence 210000100 1110 111111 13333 56667777777777665443211 011244455556666666
Q ss_pred hHHHHHHHHHHHHHh
Q 002370 838 GAALAAMSYLSCFLE 852 (930)
Q Consensus 838 ~~~~a~~~fl~~li~ 852 (930)
...|.|+--.+++.+
T Consensus 379 ~~rKEAawaIsN~ts 393 (514)
T KOG0166|consen 379 DIRKEAAWAISNLTS 393 (514)
T ss_pred HHHHHHHHHHHhhcc
Confidence 666666655555443
No 46
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=84.34 E-value=60 Score=37.49 Aligned_cols=229 Identities=9% Similarity=0.076 Sum_probs=120.6
Q ss_pred HHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhhhhhCCc--chHHHHHHHHHHHh
Q 002370 679 ALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTNFVSFQNH--ECYIRTASVVIEEF 756 (930)
Q Consensus 679 ~~~~~i~~~l~~i~~~~~~~~~~v~e~~c~~~~~~i~~l~~~~~p~l~~l~~~l~~~~~~~~~~--~~~L~l~~~li~~f 756 (930)
..|.+++....++++ +..++.++++...-+-+.+....-+. -|...+++.+.+.|... |. ...|.++.-+++ .
T Consensus 188 ~EF~qIF~lc~qiLE--~~~~~SLi~ATLesllrfl~wiPl~y-IfeTnIieLv~~~f~s~-pd~r~~tl~CLtEi~~-L 262 (1053)
T COG5101 188 IEFPQIFGLCKQILE--YSRDESLIEATLESLLRFLEWIPLDY-IFETNIIELVLEHFNSM-PDTRVATLSCLTEIVD-L 262 (1053)
T ss_pred hhHHHHHHHHHHHHH--hcCChHHHHHHHHHHHHHHhhCchhH-HHHHHHHHHHHHHhccC-CchhHHHHHHHHHHHh-h
Confidence 456778888888886 77899999988877777665543221 24567889888888754 43 334556655553 4
Q ss_pred cCCCCccchHHHHHHHHhhhHHHHHh----------hc--CCCCCCCCchHHHHHHHHHHHHhhhhHHHHhhchhchHHH
Q 002370 757 GHKDEYGPLFVTTFERFSQAASVRAL----------NS--SYICDQEPDLVEAYTNFASTFVRTSRKEVLAASGALLEVS 824 (930)
Q Consensus 757 g~~~~~~~~l~~l~~~l~~~~~~~~l----------~~--~~~~~~~pD~~~~~f~l~~~~l~~~p~~~~~s~~~~l~~~ 824 (930)
|+.+.........+..+-+++-+... .. .+.-...-+-++++-.|++.+...+-+.+-.- ...+.+
T Consensus 263 ~~~pq~n~~~~r~~v~~fq~i~~~~~~s~~p~~~d~~e~Y~~~~~neq~Fvq~LA~fL~s~~~~~~~lLE~~--e~~e~l 340 (1053)
T COG5101 263 GRHPQENAEKERILVIHFQCIEFLKMYSNKPQEEDIYEVYGGMDKNEQIFVQKLAQFLSSLYEVYISLLEAR--EMAENL 340 (1053)
T ss_pred ccCcccchhhhhHHHHHHHHHHHHHHHhccchHHHHHHHHcccChhHHHHHHHHHHHHHHHHHHHHHHhcCh--hHHHHH
Confidence 55443332222222211222200001 00 01112334456666666776666665554322 222222
Q ss_pred ---HHHHHHhhccCchhHHHHHHHHHHHHHhhhhhhc-----cCCCC-----CCC-----CccHHHHHHHHHHhhhHHHH
Q 002370 825 ---FQKAAICCTAMHRGAALAAMSYLSCFLEECLASL-----LGYTT-----SIP-----EGSFNAMAIQVISHSGEGLV 886 (930)
Q Consensus 825 ---l~~~l~~l~~~e~~~~~a~~~fl~~li~~~~~~~-----~~~~~-----~~~-----~~~~~~~~~~~l~~~G~~lv 886 (930)
.+..+.--..+|++..+.++..|..++..-.+.. .+..+ ++. ..+. ..-..+=.+.-..+.
T Consensus 341 lnah~YLiqiSrInereiFkt~leyW~klVadLy~E~q~lp~tem~Pli~ls~~s~~istnpn~-~~~~pLrkhiY~~il 419 (1053)
T COG5101 341 LNAHGYLIQISRINEREIFKTALEYWNKLVADLYSEFQRLPATEMSPLIQLSVGSQAISTNPNQ-DSTKPLRKHIYIGIL 419 (1053)
T ss_pred HHHHHHhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCcchhccccchhccCCcch-hcccchHHHHHHHHH
Confidence 3333433457899999999999999985443311 01000 000 0000 000011122234566
Q ss_pred HHHHHHhcccccccc-----hhhhhHHHHHHHhh
Q 002370 887 SNVVYALLGVSAMSR-----IHSGGSCFQKKRSQ 915 (930)
Q Consensus 887 ~~ll~~~~g~~prs~-----~~~~~~~L~~l~~~ 915 (930)
+++..-+..+.||.. .+..+|+.+.+++.
T Consensus 420 sqLrlvlienMvrPEEVliVendegEivRefvke 453 (1053)
T COG5101 420 SQLRLVLIENMVRPEEVLIVENDEGEIVREFVKE 453 (1053)
T ss_pred HHHHHHHHHcCCCcceEEEEECCCcHHHHHHhcc
Confidence 666666666777762 35577888777653
No 47
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=83.74 E-value=36 Score=34.76 Aligned_cols=138 Identities=18% Similarity=0.221 Sum_probs=78.5
Q ss_pred cchHHHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhhhhhCC--cchHHHHHHHHHHHhcCCCCccchH-HHHHHHHh
Q 002370 698 ENGNLSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTNFVSFQN--HECYIRTASVVIEEFGHKDEYGPLF-VTTFERFS 774 (930)
Q Consensus 698 ~~~~v~e~~c~~~~~~i~~l~~~~~p~l~~l~~~l~~~~~~~~~--~~~~L~l~~~li~~fg~~~~~~~~l-~~l~~~l~ 774 (930)
..+.|+-.+|.+++.++..++..+.|+++.+++.++.....+.. ......++..++...+ +.+.+ ...+.
T Consensus 65 ~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~----~~~~~~~~~l~--- 137 (228)
T PF12348_consen 65 LRSKVSKTACQLLSDLARQLGSHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCS----YSPKILLEILS--- 137 (228)
T ss_dssp H---HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-----H--HHHHHHHH---
T ss_pred hHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCC----cHHHHHHHHHH---
Confidence 34568899999999999999999999988888888776543211 0111222333332222 00111 11111
Q ss_pred hhHHHHHhhcCCCCCCCCchHHHHHHHHHHHHhhhh--HHHHhhchhchHHHHHHHHHhhccCchhHHHHHHHHHHHHHh
Q 002370 775 QAASVRALNSSYICDQEPDLVEAYTNFASTFVRTSR--KEVLAASGALLEVSFQKAAICCTAMHRGAALAAMSYLSCFLE 852 (930)
Q Consensus 775 ~~~~~~~l~~~~~~~~~pD~~~~~f~l~~~~l~~~p--~~~~~s~~~~l~~~l~~~l~~l~~~e~~~~~a~~~fl~~li~ 852 (930)
. . .-..+|.++.....++..++..++ ...+.. ...++.+......++.-.++++-.+|-..+..+..
T Consensus 138 ~------~----~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~-~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~ 206 (228)
T PF12348_consen 138 Q------G----LKSKNPQVREECAEWLAIILEKWGSDSSVLQK-SAFLKQLVKALVKLLSDADPEVREAARECLWALYS 206 (228)
T ss_dssp H------H----TT-S-HHHHHHHHHHHHHHHTT-----GGG---HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred H------H----HhCCCHHHHHHHHHHHHHHHHHccchHhhhcc-cchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence 1 1 125679999999999999999998 222221 12356677777777777777777777766666654
Q ss_pred h
Q 002370 853 E 853 (930)
Q Consensus 853 ~ 853 (930)
.
T Consensus 207 ~ 207 (228)
T PF12348_consen 207 H 207 (228)
T ss_dssp H
T ss_pred H
Confidence 4
No 48
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=82.38 E-value=1.4 Score=33.46 Aligned_cols=54 Identities=13% Similarity=0.085 Sum_probs=36.2
Q ss_pred chhhhHHHHHHHhhhhccccCCCccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHh
Q 002370 454 WKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGS 515 (930)
Q Consensus 454 W~~~Ea~L~~l~~iae~~~~~~~~~~l~~i~~~l~~l~~~~~~~~~~~~~v~~~t~~~~ig~ 515 (930)
|+..++++++|+.+++...+.... .++.++..+..+..++... ||.++ ++.+|+
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~-~~~~~~~~L~~~L~d~~~~------VR~~A-~~aLg~ 54 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQP-YLPELLPALIPLLQDDDDS------VRAAA-AWALGN 54 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHH-HHHHHHHHHHHHTTSSSHH------HHHHH-HHHHHC
T ss_pred CHHHHHHHHHHhhHhcccHHHHHH-HHHHHHHHHHHHHcCCCHH------HHHHH-HHHHhc
Confidence 778899999999988776643321 2456666665555555432 67755 588886
No 49
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=81.79 E-value=3.3 Score=31.41 Aligned_cols=50 Identities=20% Similarity=0.135 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHhhHHHHH-hchhchHHHHHHHHHhcccc--chhHHHHHHHHHH
Q 002370 504 IVYRSLADVIGSYSKWIS-AFQTNARPLLLFLAAGISEA--VSSNACASALRKI 554 (930)
Q Consensus 504 v~~~t~~~~ig~y~~wl~-~~p~~L~~vl~~l~~~l~~p--~v~~~Aa~al~~l 554 (930)
+|..+ ++.+|+.+.--. .-..+++.+++.++..+.++ .|+..|+.||.+|
T Consensus 3 vR~~A-~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 3 VRRAA-AWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHH-HHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred HHHHH-HHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 56655 589997542111 11237888999999999764 4999999998754
No 50
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=81.18 E-value=1.1e+02 Score=35.30 Aligned_cols=164 Identities=10% Similarity=0.081 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHHHHHhcCchHHHHHHHHhhhcCCCCCCCchhhhHHHHHHHhhhhccccCCCccchhHHHHHHHHhccCc
Q 002370 415 QFRMNLVELLVDICQLLRSATFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASR 494 (930)
Q Consensus 415 ~~R~~~~d~l~~~~~~l~~~~~l~~~~~~~~~~~~~~~~W~~~Ea~L~~l~~iae~~~~~~~~~~l~~i~~~l~~l~~~~ 494 (930)
+-|+..-+++-.+..++|+..+|..+++.+..+ .-|..=..-.+++-+||.+-. ...++.++... ..|
T Consensus 745 eiRR~A~~tfG~Is~aiGPqdvL~~LlnnLkvq-----eRq~RvctsvaI~iVae~cgp------fsVlP~lm~dY-~TP 812 (975)
T COG5181 745 EIRRNATETFGCISRAIGPQDVLDILLNNLKVQ-----ERQQRVCTSVAISIVAEYCGP------FSVLPTLMSDY-ETP 812 (975)
T ss_pred HHHHhhhhhhhhHHhhcCHHHHHHHHHhcchHH-----HHHhhhhhhhhhhhhHhhcCc------hhhHHHHHhcc-cCc
Confidence 467777789999999999988888888776431 223333344577778887742 12232222221 122
Q ss_pred hhhhhhHHHHHHHHHHHHHHhhHHHHHh----chhchHHHHHHHHHhccc--cchhHHHHHHHHHHHHHhhcccCCCccH
Q 002370 495 SEELKGFMHIVYRSLADVIGSYSKWISA----FQTNARPLLLFLAAGISE--AVSSNACASALRKICEDASALIDEPSNL 568 (930)
Q Consensus 495 ~~~~~~~~~v~~~t~~~~ig~y~~wl~~----~p~~L~~vl~~l~~~l~~--p~v~~~Aa~al~~lc~~c~~~l~~p~~~ 568 (930)
... |.. . ++.+++.+|+. .-+|.-.+.+.+-.+|.+ |.-+..|+.-++++.-.|.... ..
T Consensus 813 e~n------VQn-G---vLkam~fmFeyig~~s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gtg----~e 878 (975)
T COG5181 813 EAN------VQN-G---VLKAMCFMFEYIGQASLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGTG----DE 878 (975)
T ss_pred hhH------HHH-h---HHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCcc----cH
Confidence 211 121 2 23333333332 346888888888888875 5568889999999998898643 45
Q ss_pred HHHHHHHHHHH-h-cCCChhhHHHHHHHHHHHHccCCc
Q 002370 569 EILMWIGEALE-K-RHLPLEDEEEVVGAISLILGSVSN 604 (930)
Q Consensus 569 ~~l~~~~~~l~-~-~~l~~~~~~~l~eai~~vi~~~p~ 604 (930)
+....+...+- + -.-++.....+-||+-.+..++.+
T Consensus 879 da~IHLlNllwpNIle~sPhvi~~~~Eg~e~~~~~lg~ 916 (975)
T COG5181 879 DAAIHLLNLLWPNILEPSPHVIQSFDEGMESFATVLGS 916 (975)
T ss_pred HHHHHHHHHhhhhccCCCcHHHHHHHHHHHHHHHHhcc
Confidence 55444443331 1 122455666666666666555544
No 51
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=80.63 E-value=2.2 Score=38.26 Aligned_cols=94 Identities=15% Similarity=0.025 Sum_probs=55.2
Q ss_pred CCchhhhHHHHHHHhhhhccccCCCc----cchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHhchhch
Q 002370 452 IPWKEVETKLFALNVVSEVVLQEGQA----FDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNA 527 (930)
Q Consensus 452 ~~W~~~Ea~L~~l~~iae~~~~~~~~----~~l~~i~~~l~~l~~~~~~~~~~~~~v~~~t~~~~ig~y~~wl~~~p~~L 527 (930)
.+|...+.++++++.++...++.... ..++.+.+++ .++..+ ++..+ ++++++.+......++.+
T Consensus 19 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l----~~~~~~------v~~~a-~~~L~~l~~~~~~~~~~~ 87 (120)
T cd00020 19 SDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLL----KSEDEE------VVKAA-LWALRNLAAGPEDNKLIV 87 (120)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHH----hCCCHH------HHHHH-HHHHHHHccCcHHHHHHH
Confidence 34999999999999998763321100 1123333333 233222 45544 588888876433222222
Q ss_pred --HHHHHHHHHhccc--cchhHHHHHHHHHHHH
Q 002370 528 --RPLLLFLAAGISE--AVSSNACASALRKICE 556 (930)
Q Consensus 528 --~~vl~~l~~~l~~--p~v~~~Aa~al~~lc~ 556 (930)
..+++.+.+.+.+ .+++..|+.+|.++|+
T Consensus 88 ~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 88 LEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 1256666666665 4589999999999874
No 52
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=80.35 E-value=1.3e+02 Score=35.60 Aligned_cols=132 Identities=15% Similarity=0.195 Sum_probs=83.2
Q ss_pred hhhHHHHHHHhhhhccccCCCccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHh-chhchHHHHHHH
Q 002370 456 EVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISA-FQTNARPLLLFL 534 (930)
Q Consensus 456 ~~Ea~L~~l~~iae~~~~~~~~~~l~~i~~~l~~l~~~~~~~~~~~~~v~~~t~~~~ig~y~~wl~~-~p~~L~~vl~~l 534 (930)
-.|..--+++.++..+. ++.+..+|..++...+.-. -|.|. ..++.+.+.+... --.+|.+++..+
T Consensus 492 VRnttarafavvasalg-------ip~llpfLkavc~SkkSwq-----aRhTg-IkivqqIail~Gcsvlphl~~lv~ii 558 (1172)
T KOG0213|consen 492 VRNTTARAFAVVASALG-------IPALLPFLKAVCGSKKSWQ-----ARHTG-IKIVQQIAILSGCSVLPHLKPLVKII 558 (1172)
T ss_pred HHHHHHHHHHHHHHHhC-------cHHHHHHHHHHhccccchh-----hhchh-hHHHHHHHHHhcchhhhhhHHHHHHH
Confidence 44666666666666542 4777788877764322111 14433 3666666665543 235788999999
Q ss_pred HHhcccc--chhHHHHHHHHHHHHHhhcccCCCccHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHHHccCCch
Q 002370 535 AAGISEA--VSSNACASALRKICEDASALIDEPSNLEILMWIGEALEK--RHLPLEDEEEVVGAISLILGSVSNK 605 (930)
Q Consensus 535 ~~~l~~p--~v~~~Aa~al~~lc~~c~~~l~~p~~~~~l~~~~~~l~~--~~l~~~~~~~l~eai~~vi~~~p~~ 605 (930)
-.++.+. .++..+|.|+..+.+... |+-.+.+..+..-|-. ..-.......++.|+|++|--+..+
T Consensus 559 ~~gl~De~qkVR~itAlalsalaeaa~-----Pygie~fDsVlkpLwkgir~hrgk~laafLkAigyliplmd~e 628 (1172)
T KOG0213|consen 559 EHGLKDEQQKVRTITALALSALAEAAT-----PYGIEQFDSVLKPLWKGIRQHRGKELAAFLKAIGYLIPLMDAE 628 (1172)
T ss_pred HHhhcccchhhhhHHHHHHHHHHHhcC-----CcchHHHHHHHHHHHHHHHHccChHHHHHHHHHhhccccccHH
Confidence 8999863 388899999999887654 4555555555443321 1123456678889999998766553
No 53
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=79.31 E-value=1.3e+02 Score=35.00 Aligned_cols=292 Identities=15% Similarity=0.177 Sum_probs=134.0
Q ss_pred HHHHHhhHHHHHhchh-chHHHHHHHHHhccccc--hhHHHHHHHHHHHHHhhc---ccCCCccHHHHHHHHHHHHhcCC
Q 002370 510 ADVIGSYSKWISAFQT-NARPLLLFLAAGISEAV--SSNACASALRKICEDASA---LIDEPSNLEILMWIGEALEKRHL 583 (930)
Q Consensus 510 ~~~ig~y~~wl~~~p~-~L~~vl~~l~~~l~~p~--v~~~Aa~al~~lc~~c~~---~l~~p~~~~~l~~~~~~l~~~~l 583 (930)
|.++++.-. ...|. .++...+++..++.||. |+..|++++.++.+.-.. .+. ..+.+..+...+...
T Consensus 59 ~~iL~~~l~--~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~---~~~l~~~i~~~L~~~-- 131 (503)
T PF10508_consen 59 CDILKRLLS--ALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLV---DNELLPLIIQCLRDP-- 131 (503)
T ss_pred HHHHHHHHh--ccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhc---CccHHHHHHHHHcCC--
Confidence 466666554 22444 37888899999999865 899999998887643222 121 122233333332211
Q ss_pred ChhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHH-HHHHHhhhhccCCCCCCCCchhhHHHHHHhHHHHHhhhccccc
Q 002370 584 PLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSS-YEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSH 662 (930)
Q Consensus 584 ~~~~~~~l~eai~~vi~~~p~~~~~~~~l~~ll~p~-~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~l~~i~~~ 662 (930)
+.........++..+...- ..++.++++- ...+.+++....+ .. -++.++.+..+.+.
T Consensus 132 d~~Va~~A~~~L~~l~~~~-------~~~~~l~~~~~~~~L~~l~~~~~~-------~v-------R~Rv~el~v~i~~~ 190 (503)
T PF10508_consen 132 DLSVAKAAIKALKKLASHP-------EGLEQLFDSNLLSKLKSLMSQSSD-------IV-------RCRVYELLVEIASH 190 (503)
T ss_pred cHHHHHHHHHHHHHHhCCc-------hhHHHHhCcchHHHHHHHHhccCH-------HH-------HHHHHHHHHHHHhc
Confidence 2333444445555544321 1233343222 4555555554211 00 02333333333321
Q ss_pred ccccCCCCCCCCchHHHHHHHHHH--HHHHHHHhhhcc-chHHHHHHHHHHHHHHHHh-hhhh---HhhHHHHHHHHHHh
Q 002370 663 LPVPLPTNPAGDDPIFALLRVFWP--MLEKLFRSEHME-NGNLSTAACRALSLAIQSS-GQHF---VTLLPQVLDCLSTN 735 (930)
Q Consensus 663 l~~~~~~~~~~~~p~~~~~~~i~~--~l~~i~~~~~~~-~~~v~e~~c~~~~~~i~~l-~~~~---~p~l~~l~~~l~~~ 735 (930)
- + ..++.++. ++..++. ...+ |.-+.-.++.++..+..+- |-.+ ...++.+++.+...
T Consensus 191 S------------~--~~~~~~~~sgll~~ll~-eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~ 255 (503)
T PF10508_consen 191 S------------P--EAAEAVVNSGLLDLLLK-ELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDS 255 (503)
T ss_pred C------------H--HHHHHHHhccHHHHHHH-HhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhcc
Confidence 1 0 12222232 5555554 2333 3333346666666554421 1111 11333444433321
Q ss_pred hhhhCCcchHHHHHHHHHHHhcCCCCc-cchHHHHHHHHhhhHHHHHhhcCCCCCCCCchHHHHHHHHHHHHhhhhH-HH
Q 002370 736 FVSFQNHECYIRTASVVIEEFGHKDEY-GPLFVTTFERFSQAASVRALNSSYICDQEPDLVEAYTNFASTFVRTSRK-EV 813 (930)
Q Consensus 736 ~~~~~~~~~~L~l~~~li~~fg~~~~~-~~~l~~l~~~l~~~~~~~~l~~~~~~~~~pD~~~~~f~l~~~~l~~~p~-~~ 813 (930)
. .+|...-+++.+. +.-||.-... .+.+...+..|.... +..+. ..+++....-|+-++.+-...-+ .+
T Consensus 256 -~-~dp~~~~~~l~g~-~~f~g~la~~~~~~v~~~~p~~~~~l-~~~~~-----s~d~~~~~~A~dtlg~igst~~G~~~ 326 (503)
T PF10508_consen 256 -E-EDPRLSSLLLPGR-MKFFGNLARVSPQEVLELYPAFLERL-FSMLE-----SQDPTIREVAFDTLGQIGSTVEGKQL 326 (503)
T ss_pred -c-cCCcccchhhhhH-HHHHHHHHhcChHHHHHHHHHHHHHH-HHHhC-----CCChhHHHHHHHHHHHHhCCHHHHHH
Confidence 1 1231122232222 2334432111 112333444444433 22232 35676777666666666554322 22
Q ss_pred H-hhchhchHHHHHHHHHhhccCchhHHHHHHHHHHHHHhh
Q 002370 814 L-AASGALLEVSFQKAAICCTAMHRGAALAAMSYLSCFLEE 853 (930)
Q Consensus 814 ~-~s~~~~l~~~l~~~l~~l~~~e~~~~~a~~~fl~~li~~ 853 (930)
+ ...++.+..++..+....+..-.+....+++-++.++..
T Consensus 327 L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~ 367 (503)
T PF10508_consen 327 LLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTS 367 (503)
T ss_pred HHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhc
Confidence 2 222245666666666556656667788888888888864
No 54
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.96 E-value=1.6e+02 Score=35.01 Aligned_cols=45 Identities=13% Similarity=0.166 Sum_probs=34.7
Q ss_pred HHHHhchhchHHHHHHHHHhccccc--hhHHHHHHHHHHHHHhhccc
Q 002370 518 KWISAFQTNARPLLLFLAAGISEAV--SSNACASALRKICEDASALI 562 (930)
Q Consensus 518 ~wl~~~p~~L~~vl~~l~~~l~~p~--v~~~Aa~al~~lc~~c~~~l 562 (930)
.-|-..|+-|.++++-|.+.|.+|+ |+++|..-|-.++++.++..
T Consensus 170 kvFLkYPeAlr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPkny 216 (877)
T KOG1059|consen 170 KVFLKYPEALRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNY 216 (877)
T ss_pred HHHHhhhHhHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCccc
Confidence 3445669999999999999999754 88888877777776666543
No 55
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=75.73 E-value=13 Score=36.02 Aligned_cols=80 Identities=20% Similarity=0.204 Sum_probs=60.7
Q ss_pred HHHhhccCCCCCCccchhHHhhhHHhHHHhccC-cCCCChHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhc
Q 002370 45 ATSILTSDRQSFLTDFEVEFFAAQILKRKIQNE-GYYLQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRAV 123 (930)
Q Consensus 45 ~~~LL~~~~~~~~~~~~v~ffaA~tL~~ki~~~-~~~l~~e~~~~lr~~Ll~~l~~~~~~~~~v~~kL~~~La~l~~~~~ 123 (930)
...+|++. +...|+.|+.+++.-+... |+-+-... ...-+.|+..+.+ .+++.++.-.|.+++.++.+..
T Consensus 30 i~~LL~s~------~~~~rw~G~~Ll~~~~~~~~~e~l~~~~-~~W~~~Ll~~L~~--~~~~~~~~~ai~~L~~l~~~~~ 100 (165)
T PF08167_consen 30 INSLLQSK------SAYSRWAGLCLLKVTVEQCSWEILLSHG-SQWLRALLSILEK--PDPPSVLEAAIITLTRLFDLIR 100 (165)
T ss_pred HHHHhCCC------ChhhHHHHHHHHHHHHHHhhHHHHHHHH-HHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHhc
Confidence 45677553 3689999999999999986 77664444 3444457777765 5667888888999999999888
Q ss_pred ccCchHHHHH
Q 002370 124 EHGKPIEKLF 133 (930)
Q Consensus 124 ~W~~~i~~li 133 (930)
+||++.+++.
T Consensus 101 ~~p~l~Rei~ 110 (165)
T PF08167_consen 101 GKPTLTREIA 110 (165)
T ss_pred CCCchHHHHh
Confidence 9999877764
No 56
>PTZ00429 beta-adaptin; Provisional
Probab=74.55 E-value=2.2e+02 Score=34.96 Aligned_cols=96 Identities=8% Similarity=0.115 Sum_probs=51.1
Q ss_pred CCchhhhHHHHHHHhhhhccccCCCccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHhchhchHHHH
Q 002370 452 IPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLL 531 (930)
Q Consensus 452 ~~W~~~Ea~L~~l~~iae~~~~~~~~~~l~~i~~~l~~l~~~~~~~~~~~~~v~~~t~~~~ig~y~~wl~~~p~~L~~vl 531 (930)
..|.++ +.+..+..+.+.++.. ...++..+.....|.. .+|+..++ .++-.|.... +|+....++
T Consensus 232 ~EW~Qi----~IL~lL~~y~P~~~~e--~~~il~~l~~~Lq~~N------~AVVl~Ai-k~il~l~~~~--~~~~~~~~~ 296 (746)
T PTZ00429 232 NEWGQL----YILELLAAQRPSDKES--AETLLTRVLPRMSHQN------PAVVMGAI-KVVANLASRC--SQELIERCT 296 (746)
T ss_pred ChHHHH----HHHHHHHhcCCCCcHH--HHHHHHHHHHHhcCCC------HHHHHHHH-HHHHHhcCcC--CHHHHHHHH
Confidence 468765 6666666666543321 2334444443334432 24666553 6766665432 344444443
Q ss_pred HHH----HHhc-cccchhHHHHHHHHHHHHHhhccc
Q 002370 532 LFL----AAGI-SEAVSSNACASALRKICEDASALI 562 (930)
Q Consensus 532 ~~l----~~~l-~~p~v~~~Aa~al~~lc~~c~~~l 562 (930)
..+ +.-+ .+|+++-.+-+.+..+...++..+
T Consensus 297 ~rl~~pLv~L~ss~~eiqyvaLr~I~~i~~~~P~lf 332 (746)
T PTZ00429 297 VRVNTALLTLSRRDAETQYIVCKNIHALLVIFPNLL 332 (746)
T ss_pred HHHHHHHHHhhCCCccHHHHHHHHHHHHHHHCHHHH
Confidence 222 1112 246788888888888887766443
No 57
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=74.11 E-value=56 Score=34.26 Aligned_cols=199 Identities=17% Similarity=0.208 Sum_probs=103.2
Q ss_pred hchHHHHHHHHHhccccchhHHHHHHHHHHHHHhhcccCCCccHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHccCCc
Q 002370 525 TNARPLLLFLAAGISEAVSSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGSVSN 604 (930)
Q Consensus 525 ~~L~~vl~~l~~~l~~p~v~~~Aa~al~~lc~~c~~~l~~p~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~vi~~~p~ 604 (930)
+-....++|+.+.+.+......|..++..+. .++. +........+..+.+...-......+|..+++-+-.+++.-
T Consensus 38 ~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~-~~~~-~~~~~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~-- 113 (262)
T PF14500_consen 38 QEVQVLLDFFCSRLDDHACVQPALKGLLALV-KMKN-FSPESAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENH-- 113 (262)
T ss_pred HHHHHHHHHHHHHhccHhhHHHHHHHHHHHH-hCcC-CChhhHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHh--
Confidence 3456677888888887666666688888888 4443 21111223334444433334556788999998888887652
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCchhhHHHHHHhHHHHHhhhcccccccccCCCCCCCCchHHHHHHHH
Q 002370 605 KELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVF 684 (930)
Q Consensus 605 ~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~l~~i~~~l~~~~~~~~~~~~p~~~~~~~i 684 (930)
...+..+-+..+..+-++++... +|.- |..+.+.+..+. +... .....+.+
T Consensus 114 ----~~~l~~~~~~fv~~~i~~~~gEk------DPRn----Ll~~F~l~~~i~---~~~~------------~~~~~e~l 164 (262)
T PF14500_consen 114 ----REALQSMGDDFVYGFIQLIDGEK------DPRN----LLLSFKLLKVIL---QEFD------------ISEFAEDL 164 (262)
T ss_pred ----HHHHHhchhHHHHHHHHHhccCC------CHHH----HHHHHHHHHHHH---Hhcc------------cchhHHHH
Confidence 22234444555566666666543 3322 111222222222 1111 11233444
Q ss_pred HHHHHHHHHh---hhccch--HHHHHHHHHHHHHHHHhhhhhHh-hHHHHHHHHHHhhhhhCCcchHHHHHHHHHHHhcC
Q 002370 685 WPMLEKLFRS---EHMENG--NLSTAACRALSLAIQSSGQHFVT-LLPQVLDCLSTNFVSFQNHECYIRTASVVIEEFGH 758 (930)
Q Consensus 685 ~~~l~~i~~~---~~~~~~--~v~e~~c~~~~~~i~~l~~~~~p-~l~~l~~~l~~~~~~~~~~~~~L~l~~~li~~fg~ 758 (930)
+.++..-+.- .-++|+ ...|.+-..++.++.+-. .++| .+|.+++.+.+.... -....|.++..++..||.
T Consensus 165 Fd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~-~fa~~~~p~LleKL~s~~~~--~K~D~L~tL~~c~~~y~~ 241 (262)
T PF14500_consen 165 FDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTP-LFAPFAFPLLLEKLDSTSPS--VKLDSLQTLKACIENYGA 241 (262)
T ss_pred HHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcH-hhHHHHHHHHHHHHcCCCcH--HHHHHHHHHHHHHHHCCH
Confidence 4444444321 122343 234555555665555432 2333 356666666543211 123467788889999986
Q ss_pred C
Q 002370 759 K 759 (930)
Q Consensus 759 ~ 759 (930)
.
T Consensus 242 ~ 242 (262)
T PF14500_consen 242 D 242 (262)
T ss_pred H
Confidence 3
No 58
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=73.88 E-value=1.6e+02 Score=34.45 Aligned_cols=47 Identities=13% Similarity=0.167 Sum_probs=31.9
Q ss_pred HHHHhhHHHHHhchhchHHHHHHHHHhccccc--hhHHHHHHHHHHHHHhhc
Q 002370 511 DVIGSYSKWISAFQTNARPLLLFLAAGISEAV--SSNACASALRKICEDASA 560 (930)
Q Consensus 511 ~~ig~y~~wl~~~p~~L~~vl~~l~~~l~~p~--v~~~Aa~al~~lc~~c~~ 560 (930)
.+|.+|.. .-|++-..+++.++.-..+.+ ++..|-+.|-.||++-+.
T Consensus 44 q~I~kffk---~FP~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~ 92 (556)
T PF05918_consen 44 QFIPKFFK---HFPDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPE 92 (556)
T ss_dssp HHHHHHHC---C-GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T
T ss_pred HHHHHHHh---hChhhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHH
Confidence 67776654 458888899999988777644 788888888888876554
No 59
>KOG2753 consensus Uncharacterized conserved protein, contains PCI domain [General function prediction only]
Probab=71.07 E-value=1.5e+02 Score=31.67 Aligned_cols=75 Identities=15% Similarity=0.162 Sum_probs=58.6
Q ss_pred chHHHHHHHHHhccccc-hhHHHHHHHHHHHHHhhcccCCCccHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHccCC
Q 002370 526 NARPLLLFLAAGISEAV-SSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGSVS 603 (930)
Q Consensus 526 ~L~~vl~~l~~~l~~p~-v~~~Aa~al~~lc~~c~~~l~~p~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~vi~~~p 603 (930)
..-.+|.-|+.++.+|. ++-.-..++..+|.+|+.... ..+.|.++-..+.+...+.+++..++.++..++..-.
T Consensus 104 l~L~vLsnLfn~~d~~~~aR~~Vy~~lv~la~~~~~~~~---i~~~lk~~~~~lkew~~~vedqrel~r~v~~al~~~k 179 (378)
T KOG2753|consen 104 LRLQVLSNLFNGVDKPTPARYQVYMSLVTLAASCKLIEY---IVPNLKQLDDWLKEWNISVEDQRELLRAVHKALKDNK 179 (378)
T ss_pred cHHHHHHHHHhccCCCchHHHHHHHHHHHHHhhcceeee---ecccHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcc
Confidence 44567778888998877 888999999999999996432 4455666666666778899999999999999986543
No 60
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=70.97 E-value=1.7e+02 Score=35.44 Aligned_cols=35 Identities=14% Similarity=0.205 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHhhh
Q 002370 682 RVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQ 719 (930)
Q Consensus 682 ~~i~~~l~~i~~~~~~~~~~v~e~~c~~~~~~i~~l~~ 719 (930)
-+..|++..++. + .|...+|.+|.++-+++..+..
T Consensus 334 ~ealPlL~~lLs--~-~D~k~ies~~ic~~ri~d~f~h 368 (1051)
T KOG0168|consen 334 MEALPLLTPLLS--Y-QDKKPIESVCICLTRIADGFQH 368 (1051)
T ss_pred HHHHHHHHHHHh--h-ccchhHHHHHHHHHHHHHhccc
Confidence 455899999996 3 5778999999999999887633
No 61
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=70.91 E-value=2.3e+02 Score=33.81 Aligned_cols=52 Identities=21% Similarity=0.213 Sum_probs=39.9
Q ss_pred HHHHHHHhhHHHHHhchhchHHHHHHHHHhccccchhHHHHHHHHHHHHHhh
Q 002370 508 SLADVIGSYSKWISAFQTNARPLLLFLAAGISEAVSSNACASALRKICEDAS 559 (930)
Q Consensus 508 t~~~~ig~y~~wl~~~p~~L~~vl~~l~~~l~~p~v~~~Aa~al~~lc~~c~ 559 (930)
+++.++|+|-.|+.-+=-.=...++.+.+.+...+++.+||..+..+..+--
T Consensus 212 ~cLdc~g~fVSWIdInLIaNd~f~nLLy~fl~ieelR~aac~cilaiVsKkM 263 (980)
T KOG2021|consen 212 SCLDCIGSFVSWIDINLIANDYFLNLLYKFLNIEELRIAACNCILAIVSKKM 263 (980)
T ss_pred HHHHHHHHHhhhhhhhhhhchhHHHHHHHHHhHHHHHHHHHHHHHHHHhcCC
Confidence 4479999999999865433455667777777777899999999998886543
No 62
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=70.84 E-value=28 Score=29.11 Aligned_cols=87 Identities=21% Similarity=0.192 Sum_probs=57.5
Q ss_pred HHHHHHhccCCChHHHHHHHHHHHHhhcChHHHHHHHHhhccCCCCCCccchhHHhhhHHhHHHhccCcCCCChHHHHHH
Q 002370 10 AQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKDAL 89 (930)
Q Consensus 10 ~~av~~ly~~~d~~~~~~A~~~L~~fq~s~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~ki~~~~~~l~~e~~~~l 89 (930)
...++.|-.++|+..|..|-..|.++. ++++-.....++.++ +..+|..|+..|.. +. + ...
T Consensus 2 ~~L~~~l~~~~~~~vr~~a~~~L~~~~-~~~~~~~L~~~l~d~------~~~vr~~a~~aL~~-i~------~----~~~ 63 (88)
T PF13646_consen 2 PALLQLLQNDPDPQVRAEAARALGELG-DPEAIPALIELLKDE------DPMVRRAAARALGR-IG------D----PEA 63 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHCCT-HHHHHHHHHHHHTSS------SHHHHHHHHHHHHC-CH------H----HHT
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcC-CHhHHHHHHHHHcCC------CHHHHHHHHHHHHH-hC------C----HHH
Confidence 345555646889999999999999774 688888888888543 46999999999963 21 1 223
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 002370 90 LNALLVAAKRFSSGPPQLLTQICLALS 116 (930)
Q Consensus 90 r~~Ll~~l~~~~~~~~~v~~kL~~~La 116 (930)
...|...+.. .....|+.....+|+
T Consensus 64 ~~~L~~~l~~--~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 64 IPALIKLLQD--DDDEVVREAAAEALG 88 (88)
T ss_dssp HHHHHHHHTC---SSHHHHHHHHHHHH
T ss_pred HHHHHHHHcC--CCcHHHHHHHHhhcC
Confidence 3334443332 234566776666664
No 63
>PTZ00429 beta-adaptin; Provisional
Probab=69.83 E-value=2.7e+02 Score=34.11 Aligned_cols=127 Identities=12% Similarity=0.071 Sum_probs=77.5
Q ss_pred cCCChHHHHHHHHHHHHhhc-ChH-HHHHHHHhhccCCCCCCccchhHHhhhHHhHHHhccCcCCCChHHHHHHHHHHHH
Q 002370 18 HDTESCNRVAANQWLVQFQQ-TDA-AWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKDALLNALLV 95 (930)
Q Consensus 18 ~~~d~~~~~~A~~~L~~fq~-s~~-aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~ki~~~~~~l~~e~~~~lr~~Ll~ 95 (930)
.++|.+.|+-.--||..+-+ .|+ +-..+..+...-. ..++.+|-.|..+|-. |+. ++..+.+-..+..
T Consensus 78 ~S~d~elKKLvYLYL~~ya~~~pelalLaINtl~KDl~---d~Np~IRaLALRtLs~-Ir~------~~i~e~l~~~lkk 147 (746)
T PTZ00429 78 PSTDLELKKLVYLYVLSTARLQPEKALLAVNTFLQDTT---NSSPVVRALAVRTMMC-IRV------SSVLEYTLEPLRR 147 (746)
T ss_pred CCCCHHHHHHHHHHHHHHcccChHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHc-CCc------HHHHHHHHHHHHH
Confidence 46688889999999988766 465 5555666655433 3467888888877743 221 2333333333333
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHhcc---cCchHHHHHHHhhcccCCCchhHHHHHHHhhhhcc
Q 002370 96 AAKRFSSGPPQLLTQICLALSALILRAVE---HGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEE 159 (930)
Q Consensus 96 ~l~~~~~~~~~v~~kL~~~La~l~~~~~~---W~~~i~~li~~~~~~~~~~~~~~~~L~iL~~l~EE 159 (930)
.+. ..+++||++-+.+++.++...+. =.++++.+...+... ++......+..|..+.++
T Consensus 148 ~L~---D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~~LL~D~--dp~Vv~nAl~aL~eI~~~ 209 (746)
T PTZ00429 148 AVA---DPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVELLNDN--NPVVASNAAAIVCEVNDY 209 (746)
T ss_pred Hhc---CCCHHHHHHHHHHHHHHHhhCcccccccchHHHHHHHhcCC--CccHHHHHHHHHHHHHHh
Confidence 332 46789999999999998765441 124556666655542 444445566666666543
No 64
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=61.26 E-value=2.2e+02 Score=31.98 Aligned_cols=199 Identities=18% Similarity=0.214 Sum_probs=102.5
Q ss_pred hHHHHHHHHhccC-chhhhhhHHHHHHHHHHHHHHhhHHHHHhchhchHHHHHHHHHhcccc---chhHHHHHHHHHHHH
Q 002370 481 SVIMQLVAVLSAS-RSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGISEA---VSSNACASALRKICE 556 (930)
Q Consensus 481 ~~i~~~l~~l~~~-~~~~~~~~~~v~~~t~~~~ig~y~~wl~~~p~~L~~vl~~l~~~l~~p---~v~~~Aa~al~~lc~ 556 (930)
+.+.+++..+..+ +....++ ++-.---|.+-|+++-|= ++...+|..+++-+.+. ..+..|-+.++++|+
T Consensus 286 ~~v~~~l~~~~g~e~a~~~k~--alsel~~m~~e~sfsvWe----q~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~ 359 (516)
T KOG2956|consen 286 ALVADLLKEISGSERASERKE--ALSELPKMLCEGSFSVWE----QHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLT 359 (516)
T ss_pred HHHHHHHHhccCccchhHHHH--HHHHHHHHHHccchhHHH----HHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHH
Confidence 4556677776655 2211111 111001135667777774 45566666666666652 245556666666665
Q ss_pred HhhcccCCCccHHHHHHHHHHHHhcCCChhhH-HHHHHHHHHHHcc-CCchHHHHHHHHHHHHHHHHHHHhhhhccCCCC
Q 002370 557 DASALIDEPSNLEILMWIGEALEKRHLPLEDE-EEVVGAISLILGS-VSNKELKNNLLARLLSSSYEAIGKLIDGDNNHS 634 (930)
Q Consensus 557 ~c~~~l~~p~~~~~l~~~~~~l~~~~l~~~~~-~~l~eai~~vi~~-~p~~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~ 634 (930)
.=+..+.. +.+-.+..+.+. ..-+.+.- ..--|....+++. .|... .. .+.|++.. +.
T Consensus 360 ~Q~~~l~D-stE~ai~K~Lea---a~ds~~~v~~~Aeed~~~~las~~P~~~-I~-----~i~~~Ilt-------~D--- 419 (516)
T KOG2956|consen 360 NQPARLFD-STEIAICKVLEA---AKDSQDEVMRVAEEDCLTTLASHLPLQC-IV-----NISPLILT-------AD--- 419 (516)
T ss_pred hchHhhhc-hHHHHHHHHHHH---HhCCchhHHHHHHHHHHHHHHhhCchhH-HH-----HHhhHHhc-------Cc---
Confidence 55544432 222233333332 22222222 2233444444444 44322 21 22233321 10
Q ss_pred CCCCchhhHHHHHHhHHHHHhhhcccccccccCCCCCCCCchHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHH
Q 002370 635 LIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAI 714 (930)
Q Consensus 635 ~~~~~~~~~~~l~~~~~~l~~l~~i~~~l~~~~~~~~~~~~p~~~~~~~i~~~l~~i~~~~~~~~~~v~e~~c~~~~~~i 714 (930)
.| ..+..++++..+|..+.. +....++..+.|.+-+.+.. .+..|+..+..|+-.++
T Consensus 420 ---~~--------~~~~~iKm~Tkl~e~l~~---------EeL~~ll~diaP~~iqay~S---~SS~VRKtaVfCLVamv 476 (516)
T KOG2956|consen 420 ---EP--------RAVAVIKMLTKLFERLSA---------EELLNLLPDIAPCVIQAYDS---TSSTVRKTAVFCLVAMV 476 (516)
T ss_pred ---ch--------HHHHHHHHHHHHHhhcCH---------HHHHHhhhhhhhHHHHHhcC---chHHhhhhHHHhHHHHH
Confidence 11 123467788888877643 22455556666766655432 45678888888999999
Q ss_pred HHhh-hhhHhhHHHH
Q 002370 715 QSSG-QHFVTLLPQV 728 (930)
Q Consensus 715 ~~l~-~~~~p~l~~l 728 (930)
..+| ..+.|.|.++
T Consensus 477 ~~vG~~~mePhL~~L 491 (516)
T KOG2956|consen 477 NRVGMEEMEPHLEQL 491 (516)
T ss_pred HHHhHHhhhhHhhhc
Confidence 9898 7777776543
No 65
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=59.11 E-value=22 Score=29.74 Aligned_cols=57 Identities=26% Similarity=0.170 Sum_probs=44.0
Q ss_pred HHHHHHHHhccCCChHHHHHHHHHHHHhhcChHHHHHHHHhhccCCCCCCccchhHHhhhHHh
Q 002370 8 KVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQIL 70 (930)
Q Consensus 8 ~v~~av~~ly~~~d~~~~~~A~~~L~~fq~s~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL 70 (930)
++...+..+..++|+..|.+|-..|.++. +++++.....++..++ +..+|.-|+..|
T Consensus 31 ~~~~~L~~~l~d~~~~vr~~a~~aL~~i~-~~~~~~~L~~~l~~~~-----~~~vr~~a~~aL 87 (88)
T PF13646_consen 31 EAIPALIELLKDEDPMVRRAAARALGRIG-DPEAIPALIKLLQDDD-----DEVVREAAAEAL 87 (88)
T ss_dssp HHHHHHHHHHTSSSHHHHHHHHHHHHCCH-HHHTHHHHHHHHTC-S-----SHHHHHHHHHHH
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHhC-CHHHHHHHHHHHcCCC-----cHHHHHHHHhhc
Confidence 44455555556889999999999999996 6999999999998754 356788887765
No 66
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=58.00 E-value=1.3e+02 Score=38.74 Aligned_cols=150 Identities=13% Similarity=0.112 Sum_probs=0.0
Q ss_pred HHHHHHhhhhHHHHHHHHHHhhccCCCCCcchhhhHHHHHHHHHHHHHhccccccCcchhcccchHHHHHHhcCCC--Cc
Q 002370 178 YGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSLQVQ--SS 255 (930)
Q Consensus 178 ~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~c~~sWi~~~~~~~~~~~~i~~~~ll~~l~~~L~~~--~~ 255 (930)
....+.+.....+..+...+.. +..+++..|++|+..-+. .++..+.....-..+-+-+.|. .+
T Consensus 806 ~~r~f~~sfD~yLk~Il~~l~e--------~~ialRtkAlKclS~ive------~Dp~vL~~~dvq~~Vh~R~~DssasV 871 (1692)
T KOG1020|consen 806 HARSFSQSFDPYLKLILSVLGE--------NAIALRTKALKCLSMIVE------ADPSVLSRPDVQEAVHGRLNDSSASV 871 (1692)
T ss_pred hhhHHHHhhHHHHHHHHHHhcC--------chHHHHHHHHHHHHHHHh------cChHhhcCHHHHHHHHHhhccchhHH
Q ss_pred HHHHHHHHHHHHhccCChhHHHHhhhhhhHHhhhchhhccCcHhHHhhHHHHHHHHHHhhhHHHHhcChhHHHHHHHHHh
Q 002370 256 FDVAIEVLVELVGRHEGLPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMSEIGQAAPSLIVEASPEALALADALLS 335 (930)
Q Consensus 256 ~~~a~~~l~ei~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~d~d~~~~l~~l~~~~~e~~~~~l~~~~~~~~~ll~~ll~ 335 (930)
+++|+|.+-..+-..+++....+..+.. .+.+....+.+...|++.++++.. +.+..+++++.+
T Consensus 872 REAaldLvGrfvl~~~e~~~qyY~~i~e--------rIlDtgvsVRKRvIKIlrdic~e~--------pdf~~i~~~cak 935 (1692)
T KOG1020|consen 872 REAALDLVGRFVLSIPELIFQYYDQIIE--------RILDTGVSVRKRVIKILRDICEET--------PDFSKIVDMCAK 935 (1692)
T ss_pred HHHHHHHHhhhhhccHHHHHHHHHHHHh--------hcCCCchhHHHHHHHHHHHHHHhC--------CChhhHHHHHHH
Q ss_pred cccCCCCCch-hhhhcHHHHHHH
Q 002370 336 CVAFPSEDWE-IADSTLQFWSTL 357 (930)
Q Consensus 336 ~~~~p~~d~~-v~~~~~~fW~~l 357 (930)
+..--..|++ |.++.++-.+.+
T Consensus 936 mlrRv~DEEg~I~kLv~etf~kl 958 (1692)
T KOG1020|consen 936 MLRRVNDEEGNIKKLVRETFLKL 958 (1692)
T ss_pred HHHHhccchhHHHHHHHHHHHHH
No 67
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=57.62 E-value=1.7e+02 Score=35.35 Aligned_cols=91 Identities=11% Similarity=0.018 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhhhhhCCcc------hHHHHHHHHHHHhcCCC---CccchHHHHHHHHh
Q 002370 704 TAACRALSLAIQSSGQHFVTLLPQVLDCLSTNFVSFQNHE------CYIRTASVVIEEFGHKD---EYGPLFVTTFERFS 774 (930)
Q Consensus 704 e~~c~~~~~~i~~l~~~~~p~l~~l~~~l~~~~~~~~~~~------~~L~l~~~li~~fg~~~---~~~~~l~~l~~~l~ 774 (930)
-++|+++|..-+.+...+.+.+..-++.+++.|.+. |.. +++|+.+++..+=+... ...+.+.++.+.|.
T Consensus 380 R~a~dlvrgL~~~fe~~vt~v~~~~v~~~l~~y~~n-PS~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvdv~~Ff~ 458 (960)
T KOG1992|consen 380 RAAIDLVRGLCKNFEGQVTGVFSSEVQRLLDQYSKN-PSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVDVVDFFA 458 (960)
T ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhccC-CCccccccchhhhhhHHHHhhcchhhcceeeccccccHHHHHH
Confidence 355666666666666666777777778888888765 543 45777766654322111 11122333444444
Q ss_pred hhHHHHHhhcCCCCCCCCchHHH
Q 002370 775 QAASVRALNSSYICDQEPDLVEA 797 (930)
Q Consensus 775 ~~~~~~~l~~~~~~~~~pD~~~~ 797 (930)
... ++.+.+. +..++|=+..+
T Consensus 459 ~~i-lp~L~s~-~vn~~pilka~ 479 (960)
T KOG1992|consen 459 NQI-LPDLLSP-NVNEFPILKAD 479 (960)
T ss_pred HHh-hHHhccC-ccccccchhhc
Confidence 444 4556552 33455544333
No 68
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=56.98 E-value=2.1e+02 Score=31.06 Aligned_cols=146 Identities=15% Similarity=0.129 Sum_probs=81.4
Q ss_pred CCCCchhhhHHHHHHHhhhhccccCCCccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHhchhchHH
Q 002370 450 VPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARP 529 (930)
Q Consensus 450 ~~~~W~~~Ea~L~~l~~iae~~~~~~~~~~l~~i~~~l~~l~~~~~~~~~~~~~v~~~t~~~~ig~y~~wl~~~p~~L~~ 529 (930)
.+.+-++.|.++.-|....+.+..-.+-..+.-+..++. ..+++... +|..+ +++||... ..||..-..
T Consensus 93 ~s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~-~l~~~~~~------lR~~A-a~Vigt~~---qNNP~~Qe~ 161 (342)
T KOG2160|consen 93 SSVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLG-YLENSDAE------LRELA-ARVIGTAV---QNNPKSQEQ 161 (342)
T ss_pred ccCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHH-HhcCCcHH------HHHHH-HHHHHHHH---hcCHHHHHH
Confidence 356799999999999999988863222111122333344 44554433 56655 59999765 577753333
Q ss_pred -----HHHHHHHhccc--cc-hhHHHHHHHHHHHHHhhcccCCCccHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHcc
Q 002370 530 -----LLLFLAAGISE--AV-SSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGS 601 (930)
Q Consensus 530 -----vl~~l~~~l~~--p~-v~~~Aa~al~~lc~~c~~~l~~p~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~vi~~ 601 (930)
.+..|+..+.. |. ++..|-.|+..+.+.-..-...-.-.+.+..+...+.....+...+.+++.=++.+++.
T Consensus 162 v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~ 241 (342)
T KOG2160|consen 162 VIELGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQE 241 (342)
T ss_pred HHHcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHh
Confidence 33444444442 22 45555555555544322100000011223334444455556777888899999999988
Q ss_pred CCchH
Q 002370 602 VSNKE 606 (930)
Q Consensus 602 ~p~~~ 606 (930)
.+.++
T Consensus 242 ~~s~~ 246 (342)
T KOG2160|consen 242 DKSDE 246 (342)
T ss_pred hhhhh
Confidence 77655
No 69
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=55.72 E-value=14 Score=24.07 Aligned_cols=27 Identities=22% Similarity=0.213 Sum_probs=21.1
Q ss_pred hHHHHHHhcCCC--CcHHHHHHHHHHHHh
Q 002370 242 LLNFVFNSLQVQ--SSFDVAIEVLVELVG 268 (930)
Q Consensus 242 ll~~l~~~L~~~--~~~~~a~~~l~ei~~ 268 (930)
+++.+++.+.|+ +++.+|+.|+.++.+
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 467788888865 778999999998875
No 70
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=54.89 E-value=3.6e+02 Score=30.47 Aligned_cols=49 Identities=16% Similarity=0.235 Sum_probs=33.7
Q ss_pred HHHHHHHHHHhhhhHHHHhhchhchHHHHHHHHHhhccCchhHHHHHHHHHH
Q 002370 797 AYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICCTAMHRGAALAAMSYLS 848 (930)
Q Consensus 797 ~~f~l~~~~l~~~p~~~~~s~~~~l~~~l~~~l~~l~~~e~~~~~a~~~fl~ 848 (930)
-|++.+..++...|..-+. .....+|.....++..+|..++..|+.||.
T Consensus 274 ~FL~el~~il~~~~~~~f~---~i~~~lf~~la~ci~S~h~qVAErAl~~w~ 322 (409)
T PF01603_consen 274 LFLNELEEILEVLPPEEFQ---KIMVPLFKRLAKCISSPHFQVAERALYFWN 322 (409)
T ss_dssp HHHHHHHHHHTT--HHHHH---HHHHHHHHHHHHHHTSSSHHHHHHHHGGGG
T ss_pred HHHHHHHHHHHhcCHHHHH---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHC
Confidence 4667777777765544333 345667777778888888888888888875
No 71
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=52.71 E-value=5.2e+02 Score=31.65 Aligned_cols=178 Identities=12% Similarity=0.088 Sum_probs=101.4
Q ss_pred HHHHhhHHHHHhc--hh--chHHHHHHHHHhccccc--hhHHHHHHHHHHHHHhhcccCCCccHHHHHHHHHHHHhcCCC
Q 002370 511 DVIGSYSKWISAF--QT--NARPLLLFLAAGISEAV--SSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLP 584 (930)
Q Consensus 511 ~~ig~y~~wl~~~--p~--~L~~vl~~l~~~l~~p~--v~~~Aa~al~~lc~~c~~~l~~p~~~~~l~~~~~~l~~~~l~ 584 (930)
+-+....+|++.+ .. ....++..++..+.|.+ +--.|-.++..+|+--.+. .++.+...|..- +....
T Consensus 746 ~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e~-----il~dL~e~Y~s~-k~k~~ 819 (982)
T KOG4653|consen 746 YGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPED-----ILPDLSEEYLSE-KKKLQ 819 (982)
T ss_pred HHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcchh-----hHHHHHHHHHhc-ccCCC
Confidence 3455567888843 22 45688888888888744 7788889999999864432 455666666652 23344
Q ss_pred hhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCchhhHHHHHHhHHHHHhhhccccccc
Q 002370 585 LEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLP 664 (930)
Q Consensus 585 ~~~~~~l~eai~~vi~~~p~~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~l~~i~~~l~ 664 (930)
.+.++++=|+|+.++++..+ .......++++.....+.. ++. .+ . .+.+..+..+.-+.+...
T Consensus 820 ~d~~lkVGEai~k~~qa~Ge------l~~~y~~~Li~tfl~gvre-pd~-------~~-R--aSS~a~lg~Lcq~~a~~v 882 (982)
T KOG4653|consen 820 TDYRLKVGEAILKVAQALGE------LVFKYKAVLINTFLSGVRE-PDH-------EF-R--ASSLANLGQLCQLLAFQV 882 (982)
T ss_pred ccceehHHHHHHHHHHHhcc------HHHHHHHHHHHHHHHhcCC-chH-------HH-H--HhHHHHHHHHHHHHhhhh
Confidence 68899999999999987653 2334444455554444431 111 11 0 012222222221111111
Q ss_pred ccCCCCCCCCchHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHhhhhhHhhHH
Q 002370 665 VPLPTNPAGDDPIFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQHFVTLLP 726 (930)
Q Consensus 665 ~~~~~~~~~~~p~~~~~~~i~~~l~~i~~~~~~~~~~v~e~~c~~~~~~i~~l~~~~~p~l~ 726 (930)
. +.+-++..-+-.+. +-.++.-++-++..+++..+...|.++.|++.
T Consensus 883 s-------------d~~~ev~~~Il~l~--~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr 929 (982)
T KOG4653|consen 883 S-------------DFFHEVLQLILSLE--TTDGSVLVRRAAVHLLAELLNGTGEDLLPILR 929 (982)
T ss_pred h-------------HHHHHHHHHHHHHH--ccCCchhhHHHHHHHHHHHHhccchhhHHHHH
Confidence 0 12222222222222 13355567788899999999999988777653
No 72
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=51.68 E-value=1.3e+02 Score=32.87 Aligned_cols=113 Identities=12% Similarity=0.081 Sum_probs=67.6
Q ss_pred CCCchHHHHHHHHHHHHhhhhHHHHhhchhchHHHHHHHHHhh----c----cCc---------hhHHHHHHHHHHHHHh
Q 002370 790 QEPDLVEAYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICC----T----AMH---------RGAALAAMSYLSCFLE 852 (930)
Q Consensus 790 ~~pD~~~~~f~l~~~~l~~~p~~~~~s~~~~l~~~l~~~l~~l----~----~~e---------~~~~~a~~~fl~~li~ 852 (930)
..+.++...++|+..++.+..+..... ++. -|++...++ . ..+ +.+-...++||..|+.
T Consensus 68 ~~~~~~~~~LrLL~~iv~f~~g~~a~~---v~~-~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F~Lsfl~ 143 (330)
T PF11707_consen 68 SKPSLTNPALRLLTAIVSFDGGALARE---VLR-SFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRFWLSFLS 143 (330)
T ss_pred CcHHHHHHHHHHHHHHHccCCHHHHHH---HHH-hcCCchhhHHHHhccccccccccccccccCcCHHHHHHHHHHHHHc
Confidence 337788899999999999544333321 111 112211111 1 011 1556678999999998
Q ss_pred hhhhhccCCCCCCCCccHHHHHHHHHHhhhHHHHHHHHHHhcccccccchhhhhHHHHHHHhhcCCCCcccc
Q 002370 853 ECLASLLGYTTSIPEGSFNAMAIQVISHSGEGLVSNVVYALLGVSAMSRIHSGGSCFQKKRSQVCNNPATIG 924 (930)
Q Consensus 853 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~lv~~ll~~~~g~~prs~~~~~~~~L~~l~~~~~~~~~~~~ 924 (930)
.+. ....++++.+++. +..+++++.. =|.+.+..+=++|..-+.+.+..|-+..
T Consensus 144 ~~~---------------~~~~~~lL~~~~~--~~~l~k~l~~-D~~~~v~~iL~~l~~~Vl~~~~v~r~~K 197 (330)
T PF11707_consen 144 SGD---------------PELKRDLLSQKKL--MSALFKGLRK-DPPETVILILETLKDKVLKDSSVSRSTK 197 (330)
T ss_pred cCC---------------HHHHHHHHHcCch--HHHHHhcccC-CCHHHHHHHHHHHHHHhccCCCCChhhh
Confidence 632 1456777877766 8889999885 5555555555677766666555444433
No 73
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=48.23 E-value=4.9e+02 Score=30.18 Aligned_cols=62 Identities=13% Similarity=0.072 Sum_probs=37.7
Q ss_pred HHHHHHHHHhccCCChHHHHHHHHHHHHh-hcChHHHHHHHHhhccCCCCCCccchhHHhhhHHh
Q 002370 7 IKVAQAVHVLNHDTESCNRVAANQWLVQF-QQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQIL 70 (930)
Q Consensus 7 ~~v~~av~~ly~~~d~~~~~~A~~~L~~f-q~s~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL 70 (930)
+++.++++.|..++....|=.|-..|+++ ++.|+-...|..=+.+--+ ..+..+-.||-.||
T Consensus 302 ~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vcN~evEsLIs--d~Nr~IstyAITtL 364 (898)
T COG5240 302 DQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVCNKEVESLIS--DENRTISTYAITTL 364 (898)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeecChhHHHHhh--cccccchHHHHHHH
Confidence 45666777777677777777788888874 4456665555432222110 23456777777776
No 74
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=47.95 E-value=2.4e+02 Score=31.28 Aligned_cols=126 Identities=17% Similarity=0.102 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhhhhhCCcc------hHHHHHHHHHHHhcCCC---CccchHHHHHHHH
Q 002370 703 STAACRALSLAIQSSGQHFVTLLPQVLDCLSTNFVSFQNHE------CYIRTASVVIEEFGHKD---EYGPLFVTTFERF 773 (930)
Q Consensus 703 ~e~~c~~~~~~i~~l~~~~~p~l~~l~~~l~~~~~~~~~~~------~~L~l~~~li~~fg~~~---~~~~~l~~l~~~l 773 (930)
+.++|.+++...+..+..+.+.+...++.+++.|... |.. +.+++.+.+..+-.... .-.+.+.++...+
T Consensus 228 R~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~-~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff 306 (370)
T PF08506_consen 228 RRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASN-PSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFF 306 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhC-CcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHHHH
Confidence 4567777777777777777777777777778777764 432 35666666654321110 1112233444455
Q ss_pred hhhHHHHHhhcCCCCCCCCchHHHHHHHHHHHHhhhhHHHHhhchhchHHHHHHHHHhhccCchhH
Q 002370 774 SQAASVRALNSSYICDQEPDLVEAYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICCTAMHRGA 839 (930)
Q Consensus 774 ~~~~~~~~l~~~~~~~~~pD~~~~~f~l~~~~l~~~p~~~~~s~~~~l~~~l~~~l~~l~~~e~~~ 839 (930)
.+.+ ++.++ .+...+|=+..+.+.++..+-...|. +.+..+++..+.+|..++..+
T Consensus 307 ~~~v-~peL~--~~~~~~piLka~aik~~~~Fr~~l~~-------~~l~~~~~~l~~~L~~~~~vv 362 (370)
T PF08506_consen 307 SQHV-LPELQ--PDVNSHPILKADAIKFLYTFRNQLPK-------EQLLQIFPLLVNHLQSSSYVV 362 (370)
T ss_dssp HHHT-CHHHH---SS-S-HHHHHHHHHHHHHHGGGS-H-------HHHHHHHHHHHHHTTSS-HHH
T ss_pred HHHh-HHHhc--ccCCCCcchHHHHHHHHHHHHhhCCH-------HHHHHHHHHHHHHhCCCCcch
Confidence 5655 56666 24467787777888888776665443 345567777777887665544
No 75
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=46.20 E-value=1e+03 Score=33.09 Aligned_cols=227 Identities=18% Similarity=0.109 Sum_probs=120.5
Q ss_pred HHHHHHHHHHhccC-CChHHHHHHHHHHHHhhcChHHHH-----------HHHHhhccCCCCCCccchhHHhhhHHhHHH
Q 002370 6 QIKVAQAVHVLNHD-TESCNRVAANQWLVQFQQTDAAWE-----------IATSILTSDRQSFLTDFEVEFFAAQILKRK 73 (930)
Q Consensus 6 ~~~v~~av~~ly~~-~d~~~~~~A~~~L~~fq~s~~aW~-----------~~~~LL~~~~~~~~~~~~v~ffaA~tL~~k 73 (930)
...+...|+.|-+. ++++.|++|-..|..|-+..+.-. ....+|.+ .+..+|--|+.+|.+-
T Consensus 12 ~~~v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~s------g~~~vk~nAaaaL~nL 85 (2102)
T PLN03200 12 LASVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRS------GTLGAKVNAAAVLGVL 85 (2102)
T ss_pred HHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcC------CCHHHHHHHHHHHHHH
Confidence 66889999998754 367788999999999887654322 23445543 2457888887666554
Q ss_pred hccCcCCCChHHHHHH-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh--c-cc------CchHHHHHHHhhcc
Q 002370 74 IQNEGYYLQSAAKDAL-----LNALLVAAKRFSSGPPQLLTQICLALSALILRA--V-EH------GKPIEKLFYSLQNL 139 (930)
Q Consensus 74 i~~~~~~l~~e~~~~l-----r~~Ll~~l~~~~~~~~~v~~kL~~~La~l~~~~--~-~W------~~~i~~li~~~~~~ 139 (930)
-.+ ++.+..| -..|+..|. .|+...+..-+.+|-.+.... . .| ...++.++..+.++
T Consensus 86 S~~------e~nk~~Iv~~GaIppLV~LL~---sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~g 156 (2102)
T PLN03200 86 CKE------EDLRVKVLLGGCIPPLLSLLK---SGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPG 156 (2102)
T ss_pred hcC------HHHHHHHHHcCChHHHHHHHH---CCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCC
Confidence 332 1222111 112344443 455555555555666665432 1 13 45678888887763
Q ss_pred cCCCc-hhHHHHHHHhhhhcccccccccccCCCHHHHHHHHHHHHhhhhHHHHHHHHHHhhccCCCCCcchhhhHHHHHH
Q 002370 140 QSQDN-GNMAVLEMLTVLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILR 218 (930)
Q Consensus 140 ~~~~~-~~~~~L~iL~~l~EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~ 218 (930)
..... ........|..|.-.- +.+...+.+ ....+.++.++ .+ +++.++..+..
T Consensus 157 sk~d~~L~~~Av~AL~nLs~~~-----------en~~~~IIe--aGaVp~LV~LL----sS--------~d~~lQ~eAa~ 211 (2102)
T PLN03200 157 NKQDKVVEGLLTGALRNLCGST-----------DGFWSATLE--AGGVDILVKLL----SS--------GNSDAQANAAS 211 (2102)
T ss_pred chhhHHHHHHHHHHHHHHhcCc-----------cchHHHHHH--cCCHHHHHHHH----cC--------CCHHHHHHHHH
Confidence 11000 0112233343433211 111111111 11345555555 32 12345556655
Q ss_pred HHHHHHHhccccccCcchhcccchHHHHHHhcCC---CCcHHHHHHHHHHHHhccCChhH
Q 002370 219 CLLSWVRAGCFTEISQGSLAAHPLLNFVFNSLQV---QSSFDVAIEVLVELVGRHEGLPQ 275 (930)
Q Consensus 219 c~~sWi~~~~~~~~~~~~i~~~~ll~~l~~~L~~---~~~~~~a~~~l~ei~~~~~~~~~ 275 (930)
++..-.... .-+...+.....++.+.+.|.+ +.+++.|+-+|..+.+...++-+
T Consensus 212 aLa~Lass~---ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e~r~ 268 (2102)
T PLN03200 212 LLARLMMAF---ESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKEAKQ 268 (2102)
T ss_pred HHHHHHcCC---hHHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcCCHHHHH
Confidence 554443321 1123345567788999999963 35689999999998886544333
No 76
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=45.80 E-value=1.9e+02 Score=25.50 Aligned_cols=74 Identities=9% Similarity=0.105 Sum_probs=52.0
Q ss_pred hhHHHHHHHHHHHHHhhcccCCCccHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHH
Q 002370 543 SSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEA 622 (930)
Q Consensus 543 v~~~Aa~al~~lc~~c~~~l~~p~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~~l~~ll~p~~~~ 622 (930)
-+.+|-+++..+.+-|++.+.. ..+.+..+...... ..+-+...+++=...+..+++++ ....+.++...+++.
T Consensus 31 ek~~~l~si~~lI~~~~~~i~~--~~pQI~a~L~sal~---~~~l~~~al~~W~~fi~~L~~~~-l~~ll~~~~~~l~~~ 104 (107)
T PF08064_consen 31 EKKRALRSIEELIKLGGSHISS--ARPQIMACLQSALE---IPELREEALSCWNCFIKTLDEED-LGPLLDQIFAILLPL 104 (107)
T ss_pred HHHHHHHHHHHHHHHhHHHHHH--HHHHHHHHHHHHhC---ChhhHHHHHHHHHHHHHHCCHHH-HHHHHHHHHHHHHHh
Confidence 5889999999999999987752 66766666554322 12567778899999999998866 555565555544443
No 77
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=42.59 E-value=6.7e+02 Score=30.71 Aligned_cols=116 Identities=9% Similarity=0.079 Sum_probs=58.8
Q ss_pred hhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHhchhch--HHHHHHHHHhcccc---chhHHHHHHHHHH
Q 002370 480 FSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNA--RPLLLFLAAGISEA---VSSNACASALRKI 554 (930)
Q Consensus 480 l~~i~~~l~~l~~~~~~~~~~~~~v~~~t~~~~ig~y~~wl~~~p~~L--~~vl~~l~~~l~~p---~v~~~Aa~al~~l 554 (930)
+..++..|..|.+|.+.-. +..-+ |+.+.-+++-+-+.-..+ ..+++.|+..|..- +|+..+-.|+.+|
T Consensus 209 v~slvp~Lv~LL~~E~n~D-----IMl~A-cRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~i 282 (1051)
T KOG0168|consen 209 VKSLVPVLVALLSHEHNFD-----IMLLA-CRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKI 282 (1051)
T ss_pred HHHHHHHHHHHHhccccHH-----HHHHH-HHHHHHHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHH
Confidence 3445666666776665321 22212 344444443222111222 23566666666542 3788899999999
Q ss_pred HHHhhcccCCCccHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHccCCchH
Q 002370 555 CEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGSVSNKE 606 (930)
Q Consensus 555 c~~c~~~l~~p~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~vi~~~p~~~ 606 (930)
.+.-.+-++....+...+...+.+ +...|...+.-++.....+++++
T Consensus 283 SR~H~~AiL~AG~l~a~LsylDFF-----Si~aQR~AlaiaaN~Cksi~sd~ 329 (1051)
T KOG0168|consen 283 SRRHPKAILQAGALSAVLSYLDFF-----SIHAQRVALAIAANCCKSIRSDE 329 (1051)
T ss_pred HhhccHHHHhcccHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhcCCCcc
Confidence 877665443223344433333332 23334444445555556666655
No 78
>PRK09687 putative lyase; Provisional
Probab=41.98 E-value=4.5e+02 Score=27.87 Aligned_cols=123 Identities=12% Similarity=0.006 Sum_probs=69.1
Q ss_pred cCchHHHHHHHHhhhcCCCCCCCchhhhHHHHHHHhhhhccccCCCccchhHHHHHHHHhccCchhhhhhHHHHHHHHHH
Q 002370 431 LRSATFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLA 510 (930)
Q Consensus 431 l~~~~~l~~~~~~~~~~~~~~~~W~~~Ea~L~~l~~iae~~~~~~~~~~l~~i~~~l~~l~~~~~~~~~~~~~v~~~t~~ 510 (930)
+|++..+..+...+. ..+|.-...+.++|+.+.. ++ +.+.+.|.....++... ||..+ .
T Consensus 155 ~~~~~ai~~L~~~L~-----d~~~~VR~~A~~aLg~~~~-----~~----~~~~~~L~~~L~D~~~~------VR~~A-~ 213 (280)
T PRK09687 155 INDEAAIPLLINLLK-----DPNGDVRNWAAFALNSNKY-----DN----PDIREAFVAMLQDKNEE------IRIEA-I 213 (280)
T ss_pred cCCHHHHHHHHHHhc-----CCCHHHHHHHHHHHhcCCC-----CC----HHHHHHHHHHhcCCChH------HHHHH-H
Confidence 354545555544442 3567777888888887721 11 33334333333444322 56645 4
Q ss_pred HHHHhhHHHHHhchhchHHHHHHHHHhccccchhHHHHHHHHHHHHHhhcccCCCccHHHHHHHHHHHHhcCCChhhHHH
Q 002370 511 DVIGSYSKWISAFQTNARPLLLFLAAGISEAVSSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEE 590 (930)
Q Consensus 511 ~~ig~y~~wl~~~p~~L~~vl~~l~~~l~~p~v~~~Aa~al~~lc~~c~~~l~~p~~~~~l~~~~~~l~~~~l~~~~~~~ 590 (930)
+.+|++. + +.+++.|++.+.++.++..|+.|+-.+-. |..++.|..+... .-+...+.+
T Consensus 214 ~aLg~~~-----~----~~av~~Li~~L~~~~~~~~a~~ALg~ig~--------~~a~p~L~~l~~~----~~d~~v~~~ 272 (280)
T PRK09687 214 IGLALRK-----D----KRVLSVLIKELKKGTVGDLIIEAAGELGD--------KTLLPVLDTLLYK----FDDNEIITK 272 (280)
T ss_pred HHHHccC-----C----hhHHHHHHHHHcCCchHHHHHHHHHhcCC--------HhHHHHHHHHHhh----CCChhHHHH
Confidence 7888754 2 35777777777877777777777665432 3355666665542 124555555
Q ss_pred HHHHH
Q 002370 591 VVGAI 595 (930)
Q Consensus 591 l~eai 595 (930)
..+++
T Consensus 273 a~~a~ 277 (280)
T PRK09687 273 AIDKL 277 (280)
T ss_pred HHHHH
Confidence 55554
No 79
>KOG4541 consensus Nuclear transport receptor exportin 4 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=40.88 E-value=6.3e+02 Score=29.21 Aligned_cols=226 Identities=11% Similarity=-0.004 Sum_probs=109.1
Q ss_pred ChhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCchhhHHHHHHhHHHHHhhhcccccc
Q 002370 584 PLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHL 663 (930)
Q Consensus 584 ~~~~~~~l~eai~~vi~~~p~~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~l~~i~~~l 663 (930)
+...+..++.++...=-+--+.+.+.++-...+.|+-+++-...++.... .. ..+++.+|. ++.+.
T Consensus 358 s~p~~~~lmkaLvl~gfa~~d~e~~~n~~~~~LqpL~~Rf~~~~nq~~q~-------~~------~~~Ii~~l~-~~~g~ 423 (748)
T KOG4541|consen 358 SPPLMEALMKALVLWGFAYLDLEEECNLGSNKLQPLPSRFFTYFNQHNQG-------KF------VLDIIVRLS-LTSGT 423 (748)
T ss_pred CchHHHHHHHHHHHHHHHHhhHHHHHHHHHhhccccHHHHHHHhcccchh-------hH------HHHHHHHHH-Hhccc
Confidence 45667888888776643322223357788889999999999888876321 11 123444442 23222
Q ss_pred cccCCCCCCCCchHHHHHHHHHHHHHHHHHh--hhccchHHHHHHHHHHHHHHHH----hh-hhhH-hhHHHHHHHHHHh
Q 002370 664 PVPLPTNPAGDDPIFALLRVFWPMLEKLFRS--EHMENGNLSTAACRALSLAIQS----SG-QHFV-TLLPQVLDCLSTN 735 (930)
Q Consensus 664 ~~~~~~~~~~~~p~~~~~~~i~~~l~~i~~~--~~~~~~~v~e~~c~~~~~~i~~----l~-~~~~-p~l~~l~~~l~~~ 735 (930)
. + .++.|-....++-++-++...... .++...+++..+...+--.-.. .+ ++-. .+....++ +.+.
T Consensus 424 a--~---a~q~d~~~~Lf~fL~~~~~~c~glm~s~~~~~~~v~~i~~~~vdvs~k~~~y~~~e~~~~~ly~sclq-l~~~ 497 (748)
T KOG4541|consen 424 A--Y---AGQKDLQRSLFQFLVLSAYGCRGLMASNQYVKDLVAHITSSLVDVSNKSDLYNLAEQPDIILYVSCLQ-LERL 497 (748)
T ss_pred c--c---cccchhHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHhhhhhhhhccccChhHHHHHHHHH-HHHH
Confidence 1 1 123344555566555555544431 2444555554444443322111 11 1111 11122221 2233
Q ss_pred hhhhC--C--------------cchHHHHHHHHHH-HhcCCC---CccchHHHHH-HHHhhhHHHHHhhcCCCCCCCCch
Q 002370 736 FVSFQ--N--------------HECYIRTASVVIE-EFGHKD---EYGPLFVTTF-ERFSQAASVRALNSSYICDQEPDL 794 (930)
Q Consensus 736 ~~~~~--~--------------~~~~L~l~~~li~-~fg~~~---~~~~~l~~l~-~~l~~~~~~~~l~~~~~~~~~pD~ 794 (930)
|.+.+ + ..-++.+++.+.+ .|.++. .....+.+.+ ..+ ... ++.+. .+.-.+|.+
T Consensus 498 y~~~~~~r~rt~~a~~Ee~~sdl~lvl~lL~n~lskdF~~~s~e~~~~~G~a~VV~~gl-~~i-lplm~--~~lLk~P~l 573 (748)
T KOG4541|consen 498 YGAASATRPRTQRAIYEEGLSDLNLVLRLLENYLSKDFSSDSIETQSTNGIAQVVYFGL-HII-LPLMT--LELLKYPKL 573 (748)
T ss_pred hhhhcccCcchHHHHHHhhhhHHHHHHHHHHHHhhhhhhccccccccccCcceEEEeeH-HHH-HHHHH--HHHHhchHH
Confidence 33211 0 1113444444432 232221 1111111100 000 000 01111 123468999
Q ss_pred HHHHHHHHHHHHhhhhHHHHhhchhchHHHHHHHHHhhc
Q 002370 795 VEAYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICCT 833 (930)
Q Consensus 795 ~~~~f~l~~~~l~~~p~~~~~s~~~~l~~~l~~~l~~l~ 833 (930)
.-+||+++.-+..+.|..+-+.+......+.+|.-.+++
T Consensus 574 c~~~~~lIty~ce~~pe~la~~~~~l~~sl~qc~~LGMT 612 (748)
T KOG4541|consen 574 CFDDVDLITYMCERAPEALASYHYKLKNSLNQCSGLGMT 612 (748)
T ss_pred HHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHhhccCCc
Confidence 999999999999999999876654556666666666665
No 80
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=40.23 E-value=2.6e+02 Score=24.70 Aligned_cols=89 Identities=10% Similarity=0.094 Sum_probs=59.1
Q ss_pred HHHHHHHHHhccccc------hhHHHHHHHHHHHHHhhcccCCCccHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHcc
Q 002370 528 RPLLLFLAAGISEAV------SSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGS 601 (930)
Q Consensus 528 ~~vl~~l~~~l~~p~------v~~~Aa~al~~lc~~c~~~l~~p~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~vi~~ 601 (930)
-.+++.+-+.+++++ -+.+|-+|+..+.+-|++++. ...+.+..+...-.. .++-+..-+++-...+..
T Consensus 10 LGil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~--~a~pQI~acL~saL~---~~eL~~~al~~W~~~i~~ 84 (107)
T smart00802 10 LGILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHIS--SALPQIMACLQSALE---IPELRSLALRCWHVLIKT 84 (107)
T ss_pred HHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhC---chhHHHHHHHHHHHHHHh
Confidence 345555556666533 378899999999999998774 367766666543211 345677888999999999
Q ss_pred CCchHHHHHHHHHHHHHHHHH
Q 002370 602 VSNKELKNNLLARLLSSSYEA 622 (930)
Q Consensus 602 ~p~~~~~~~~l~~ll~p~~~~ 622 (930)
+++++ ....+++.+.-+++.
T Consensus 85 L~~~~-l~~ll~~~~~~i~~~ 104 (107)
T smart00802 85 LKEEE-LGPLLDQIFAAILPL 104 (107)
T ss_pred CCHHH-HHHHHHHHHHHHHHh
Confidence 98866 455555555444443
No 81
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=39.80 E-value=8.9e+02 Score=30.68 Aligned_cols=204 Identities=16% Similarity=0.036 Sum_probs=103.0
Q ss_pred HHHHHHhccCCChHHHHHHHHHHHHhhcChHHHHHHHHhhccCCCCCCccchhHHhhhHHhHHHhccCcCCCChHHHHHH
Q 002370 10 AQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKDAL 89 (930)
Q Consensus 10 ~~av~~ly~~~d~~~~~~A~~~L~~fq~s~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~ki~~~~~~l~~e~~~~l 89 (930)
...+..| .++|+..|+.|-++|.++. .+++-.....+|..+ +..||.-|+..|..-.. . ++..
T Consensus 624 ~~L~~~L-~D~d~~VR~~Av~~L~~~~-~~~~~~~L~~aL~D~------d~~VR~~Aa~aL~~l~~-~---~~~~----- 686 (897)
T PRK13800 624 AELAPYL-ADPDPGVRRTAVAVLTETT-PPGFGPALVAALGDG------AAAVRRAAAEGLRELVE-V---LPPA----- 686 (897)
T ss_pred HHHHHHh-cCCCHHHHHHHHHHHhhhc-chhHHHHHHHHHcCC------CHHHHHHHHHHHHHHHh-c---cCch-----
Confidence 3344334 5789999999999999987 466666677778543 46999999999854321 1 1111
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcccCchHHHHHHHhhcccCCCchhHHHHHHHhhhh--cccccccccc
Q 002370 90 LNALLVAAKRFSSGPPQLLTQICLALSALILRAVEHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLP--EEVIDSQASD 167 (930)
Q Consensus 90 r~~Ll~~l~~~~~~~~~v~~kL~~~La~l~~~~~~W~~~i~~li~~~~~~~~~~~~~~~~L~iL~~l~--EE~~~~~~~~ 167 (930)
..|...|. ..++.||.....+|..+.. ....-++..+... ++........-|..+. +.+.. ...+
T Consensus 687 -~~L~~~L~---~~d~~VR~~A~~aL~~~~~------~~~~~l~~~L~D~--d~~VR~~Av~aL~~~~~~~~l~~-~l~D 753 (897)
T PRK13800 687 -PALRDHLG---SPDPVVRAAALDVLRALRA------GDAALFAAALGDP--DHRVRIEAVRALVSVDDVESVAG-AATD 753 (897)
T ss_pred -HHHHHHhc---CCCHHHHHHHHHHHHhhcc------CCHHHHHHHhcCC--CHHHHHHHHHHHhcccCcHHHHH-HhcC
Confidence 12333333 2455666655555554321 1122333444321 1211222222222221 11100 0000
Q ss_pred cCCCHHHHHHHHHHHHhh---hhHHHHHHHHHHhhccCCCCCcchhhhHHHHHHHHHHHHHhccccccCcchhcccchHH
Q 002370 168 CNISSAHRSQYGQELLSH---TPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLN 244 (930)
Q Consensus 168 ~~l~~~~r~~~~~~l~~~---~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~c~~sWi~~~~~~~~~~~~i~~~~ll~ 244 (930)
-...-|......|... .......|...+.. ++..++..++.++...-. ......
T Consensus 754 --~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~D--------~d~~VR~aA~~aLg~~g~-------------~~~~~~ 810 (897)
T PRK13800 754 --ENREVRIAVAKGLATLGAGGAPAGDAVRALTGD--------PDPLVRAAALAALAELGC-------------PPDDVA 810 (897)
T ss_pred --CCHHHHHHHHHHHHHhccccchhHHHHHHHhcC--------CCHHHHHHHHHHHHhcCC-------------cchhHH
Confidence 1223444444444442 12234555554443 345788888888866521 112334
Q ss_pred HHHHhcCCC--CcHHHHHHHHHHH
Q 002370 245 FVFNSLQVQ--SSFDVAIEVLVEL 266 (930)
Q Consensus 245 ~l~~~L~~~--~~~~~a~~~l~ei 266 (930)
.+...|.++ .++..|++.|..+
T Consensus 811 ~l~~aL~d~d~~VR~~Aa~aL~~l 834 (897)
T PRK13800 811 AATAALRASAWQVRQGAARALAGA 834 (897)
T ss_pred HHHHHhcCCChHHHHHHHHHHHhc
Confidence 455666654 5777888887643
No 82
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=38.45 E-value=32 Score=32.16 Aligned_cols=44 Identities=18% Similarity=0.200 Sum_probs=31.7
Q ss_pred HHHHHHHhhHHHHHhchhchHHHHHHHHHhccccchhHHHHHHH
Q 002370 508 SLADVIGSYSKWISAFQTNARPLLLFLAAGISEAVSSNACASAL 551 (930)
Q Consensus 508 t~~~~ig~y~~wl~~~p~~L~~vl~~l~~~l~~p~v~~~Aa~al 551 (930)
.++.++++|..|+.-..-.-...++.+++.+++|.++..|+..|
T Consensus 105 ~~L~~l~s~i~~~~~~~i~~~~~l~~~~~~l~~~~~~~~A~~cl 148 (148)
T PF08389_consen 105 AALKCLKSWISWIPIELIINSNLLNLIFQLLQSPELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHTTTS-HHHHHSSSHHHHHHHHTTSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHhccHHHHHHHHHHcCCHHHHHHHHHhC
Confidence 33689999988876533333457888888889999998888754
No 83
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=38.42 E-value=76 Score=31.03 Aligned_cols=47 Identities=11% Similarity=0.135 Sum_probs=38.2
Q ss_pred HHHHhhHHHHHhchhchHHHHHHHHHhcccc--chhHHHHHHHHHHHHH
Q 002370 511 DVIGSYSKWISAFQTNARPLLLFLAAGISEA--VSSNACASALRKICED 557 (930)
Q Consensus 511 ~~ig~y~~wl~~~p~~L~~vl~~l~~~l~~p--~v~~~Aa~al~~lc~~ 557 (930)
.++..+++...++|..+.+.++.+...|.++ .|+..|...+.++...
T Consensus 7 n~i~~l~DL~~r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~ 55 (178)
T PF12717_consen 7 NAIIALGDLCIRYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILE 55 (178)
T ss_pred HHHHHHHHHHHhCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc
Confidence 4555556666889999999999999999985 4899999988888754
No 84
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=37.60 E-value=8e+02 Score=29.48 Aligned_cols=134 Identities=21% Similarity=0.146 Sum_probs=76.1
Q ss_pred CCchHHH----HHHHHHHH---hcc-CCChH-HHHHHHHHHHHhhcChHHHHHHHHhhccC-CCCCCccchhHHhhhHHh
Q 002370 1 MQMDLQI----KVAQAVHV---LNH-DTESC-NRVAANQWLVQFQQTDAAWEIATSILTSD-RQSFLTDFEVEFFAAQIL 70 (930)
Q Consensus 1 ~~~~~~~----~v~~av~~---ly~-~~d~~-~~~~A~~~L~~fq~s~~aW~~~~~LL~~~-~~~~~~~~~v~ffaA~tL 70 (930)
|+|++++ ...++|.. +|. ++.++ ..+-+-+|...+++.+-.-.+...++.+- ++.++.+-.|||=..|+|
T Consensus 30 ~em~t~~~F~eeflr~vn~il~vkKresi~dRIl~fla~fv~sl~q~d~e~DlV~~~f~hlLRg~Eskdk~VRfrvlqil 109 (892)
T KOG2025|consen 30 MEMLTAHEFSEEFLRVVNYILLVKKRESIPDRILSFLARFVESLPQLDKEEDLVAGTFYHLLRGTESKDKKVRFRVLQIL 109 (892)
T ss_pred HHhhhHhhhHHHHHHHHHHheeeccCCCcHHHHHHHHHHHHHhhhccCchhhHHHHHHHHHHhcccCcchhHHHHHHHHH
Confidence 3455543 34555552 343 33333 34456666667777655544544444321 011245679999999999
Q ss_pred HHHhccCcCCCChHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhc--ccCchHHHHHHHhhcc
Q 002370 71 KRKIQNEGYYLQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRAV--EHGKPIEKLFYSLQNL 139 (930)
Q Consensus 71 ~~ki~~~~~~l~~e~~~~lr~~Ll~~l~~~~~~~~~v~~kL~~~La~l~~~~~--~W~~~i~~li~~~~~~ 139 (930)
+.-.. .-.+.|++-...|...++.-+. ...+.||.+...+|+.+=- .+ +--..++.+...+++.
T Consensus 110 a~l~d-~~~eidd~vfn~l~e~l~~Rl~---Drep~VRiqAv~aLsrlQ~-d~~dee~~v~n~l~~liqnD 175 (892)
T KOG2025|consen 110 ALLSD-ENAEIDDDVFNKLNEKLLIRLK---DREPNVRIQAVLALSRLQG-DPKDEECPVVNLLKDLIQND 175 (892)
T ss_pred HHHhc-cccccCHHHHHHHHHHHHHHHh---ccCchHHHHHHHHHHHHhc-CCCCCcccHHHHHHHHHhcC
Confidence 76555 4467788878787777766554 4567899887766665421 22 1112344455555553
No 85
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.32 E-value=8.1e+02 Score=29.47 Aligned_cols=216 Identities=16% Similarity=0.155 Sum_probs=107.9
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhc-ccCchHHHHHHHhhcccCCCchhHHHHHHHhhhhcccc
Q 002370 83 SAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRAV-EHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVI 161 (930)
Q Consensus 83 ~e~~~~lr~~Ll~~l~~~~~~~~~v~~kL~~~La~l~~~~~-~W~~~i~~li~~~~~~~~~~~~~~~~L~iL~~l~EE~~ 161 (930)
++-...|-+-++..+.+ .-++||.|....|=.++++++ .-...++-+.+.+... ++....+... +++|=..
T Consensus 139 pdLARDLa~Dv~tLL~s---skpYvRKkAIl~lykvFLkYPeAlr~~FprL~EkLeDp--Dp~V~SAAV~---VICELAr 210 (877)
T KOG1059|consen 139 PDLARDLADDVFTLLNS---SKPYVRKKAILLLYKVFLKYPEALRPCFPRLVEKLEDP--DPSVVSAAVS---VICELAR 210 (877)
T ss_pred chhhHHHHHHHHHHHhc---CchHHHHHHHHHHHHHHHhhhHhHhhhHHHHHHhccCC--CchHHHHHHH---HHHHHHh
Confidence 34455666666666653 347899998888888888876 2344566666666542 3333333333 3443321
Q ss_pred cccccccCCCHHHHHHHHHHHHhhhhHHHHHHHHHHhhccCCCCCcchhhhHHHHHHHHHHHHHhccccccCcchhcccc
Q 002370 162 DSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHP 241 (930)
Q Consensus 162 ~~~~~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~c~~sWi~~~~~~~~~~~~i~~~~ 241 (930)
+- + +....-+|..+.++.+. . +.=+....++-|.+-.++.++ .. -.
T Consensus 211 ---Kn----P--------knyL~LAP~ffkllttS-s----------NNWmLIKiiKLF~aLtplEPR--Lg------KK 256 (877)
T KOG1059|consen 211 ---KN----P--------QNYLQLAPLFYKLLVTS-S----------NNWVLIKLLKLFAALTPLEPR--LG------KK 256 (877)
T ss_pred ---hC----C--------cccccccHHHHHHHhcc-C----------CCeehHHHHHHHhhccccCch--hh------hh
Confidence 10 1 11223467777776542 1 112667888888887776432 11 12
Q ss_pred hHHHHHHhcCCCCcHHHHHHHHHHHHhccC-----Ch---hHHHHhhhhhhHHhhhchhhccCcHhHHhhHHHHHHHHHH
Q 002370 242 LLNFVFNSLQVQSSFDVAIEVLVELVGRHE-----GL---PQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMSEIGQ 313 (930)
Q Consensus 242 ll~~l~~~L~~~~~~~~a~~~l~ei~~~~~-----~~---~~~l~~~~~~l~~~~~~~~~~~~d~d~~~~l~~l~~~~~e 313 (930)
+++.+.+.+.+...-...-||+..++...+ +- .+.-+.. ++. .+.+.|.. .+-++-+
T Consensus 257 Lieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asiqLCvqK---Lr~-----fiedsDqN-LKYlgLl------ 321 (877)
T KOG1059|consen 257 LIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASIQLCVQK---LRI-----FIEDSDQN-LKYLGLL------ 321 (877)
T ss_pred hhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHHHHHHHH---Hhh-----hhhcCCcc-HHHHHHH------
Confidence 333344333332222222344444444321 11 1111121 221 12233322 2222211
Q ss_pred hhhHHH-HhcChhHHHHHHHHHhcccCCCCCchhhhhcHHHHHHHH
Q 002370 314 AAPSLI-VEASPEALALADALLSCVAFPSEDWEIADSTLQFWSTLA 358 (930)
Q Consensus 314 ~~~~~l-~~~~~~~~~ll~~ll~~~~~p~~d~~v~~~~~~fW~~l~ 358 (930)
....+ ..|+..+++--+++++|.... |..|...+++..|.+.
T Consensus 322 -am~KI~ktHp~~Vqa~kdlIlrcL~Dk--D~SIRlrALdLl~gmV 364 (877)
T KOG1059|consen 322 -AMSKILKTHPKAVQAHKDLILRCLDDK--DESIRLRALDLLYGMV 364 (877)
T ss_pred -HHHHHhhhCHHHHHHhHHHHHHHhccC--CchhHHHHHHHHHHHh
Confidence 12222 234445567788999999886 7778888888766653
No 86
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=36.98 E-value=2.3e+02 Score=35.36 Aligned_cols=84 Identities=15% Similarity=0.099 Sum_probs=53.7
Q ss_pred HHHhhHHHHHhchhchHHHHHHHHHh-ccc--cchhHHHHHHHHHHHHHhhcccCCCccHHHHHHHHHHHHhcCCChhhH
Q 002370 512 VIGSYSKWISAFQTNARPLLLFLAAG-ISE--AVSSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDE 588 (930)
Q Consensus 512 ~ig~y~~wl~~~p~~L~~vl~~l~~~-l~~--p~v~~~Aa~al~~lc~~c~~~l~~p~~~~~l~~~~~~l~~~~l~~~~~ 588 (930)
+-+..+..++..|.|..++++=++.. +.| +.++..||.++.++...-.+.+.. +.++.++.... .-+...|
T Consensus 526 cy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~pk~~a~-~~L~~lld~~l-----s~~~~~r 599 (1133)
T KOG1943|consen 526 CYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTEPKYLAD-YVLPPLLDSTL-----SKDASMR 599 (1133)
T ss_pred HHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhHHhhcc-cchhhhhhhhc-----CCChHHh
Confidence 34445556667788999999888743 664 668999999999999888877653 34444333221 1134445
Q ss_pred HHHHHHHHHHHcc
Q 002370 589 EEVVGAISLILGS 601 (930)
Q Consensus 589 ~~l~eai~~vi~~ 601 (930)
...+-+.|.|+.+
T Consensus 600 ~g~~la~~ev~~~ 612 (1133)
T KOG1943|consen 600 HGVFLAAGEVIGA 612 (1133)
T ss_pred hhhHHHHHHHHHH
Confidence 5555555555543
No 87
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=36.96 E-value=6.6e+02 Score=28.36 Aligned_cols=159 Identities=13% Similarity=0.072 Sum_probs=85.9
Q ss_pred CchhhhHHHHHHHhhhhccccCCCccchhHHHHH-HHHh--ccCchhhhhhHHHHHHHHHHHHHHhhHHHHHhchhchHH
Q 002370 453 PWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQL-VAVL--SASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARP 529 (930)
Q Consensus 453 ~W~~~Ea~L~~l~~iae~~~~~~~~~~l~~i~~~-l~~l--~~~~~~~~~~~~~v~~~t~~~~ig~y~~wl~~~p~~L~~ 529 (930)
++...-+++-+++++.--.+.++. +..+++. ...+ ...+..+.. ++ ....|+... .+-++...-..
T Consensus 203 ~~~~~~~~~~~la~LvNK~~~~~~---l~~~l~~~~~~~~~~~~~~~~~~---~~--~~~~Wi~Ka---Lv~R~~~~~~~ 271 (415)
T PF12460_consen 203 DEFSRLAALQLLASLVNKWPDDDD---LDEFLDSLLQSISSSEDSELRPQ---AL--EILIWITKA---LVMRGHPLATE 271 (415)
T ss_pred ChHHHHHHHHHHHHHHcCCCChhh---HHHHHHHHHhhhcccCCcchhHH---HH--HHHHHHHHH---HHHcCCchHHH
Confidence 366677888888887766544332 3444443 3333 111111110 01 111122222 12233333556
Q ss_pred HHHHHHHhccccchhHHHHHHHHHHHHHhhcccCCCccH--------HHHHHHHHHHHh--cCCChhhHHHHHHHHHHHH
Q 002370 530 LLLFLAAGISEAVSSNACASALRKICEDASALIDEPSNL--------EILMWIGEALEK--RHLPLEDEEEVVGAISLIL 599 (930)
Q Consensus 530 vl~~l~~~l~~p~v~~~Aa~al~~lc~~c~~~l~~p~~~--------~~l~~~~~~l~~--~~l~~~~~~~l~eai~~vi 599 (930)
.++.++..+.++++...||++|.-+..+....+....+. -.+..+...+.. ..-+.+.+.....|+++++
T Consensus 272 ~~~~L~~lL~~~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll 351 (415)
T PF12460_consen 272 LLDKLLELLSSPELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLL 351 (415)
T ss_pred HHHHHHHHhCChhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHH
Confidence 677778888889999999999999998855443211111 112222222221 1123336788889999999
Q ss_pred ccCCchHHHHHHHHHHHHHHHHHH
Q 002370 600 GSVSNKELKNNLLARLLSSSYEAI 623 (930)
Q Consensus 600 ~~~p~~~~~~~~l~~ll~p~~~~l 623 (930)
..+|..- ....+..++.-+++.+
T Consensus 352 ~~vP~~v-l~~~l~~LlPLLlqsL 374 (415)
T PF12460_consen 352 KNVPKSV-LLPELPTLLPLLLQSL 374 (415)
T ss_pred hhCCHHH-HHHHHHHHHHHHHHHh
Confidence 9999754 4555666665444443
No 88
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=36.04 E-value=3.9e+02 Score=29.06 Aligned_cols=106 Identities=20% Similarity=0.224 Sum_probs=70.4
Q ss_pred HHHHHHH--HHHhcc-CCChHHHHHHHHHHHHhhc---------ChHHHHHHHHhhccCCCCCCccchhHHhhhHHhHHH
Q 002370 6 QIKVAQA--VHVLNH-DTESCNRVAANQWLVQFQQ---------TDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRK 73 (930)
Q Consensus 6 ~~~v~~a--v~~ly~-~~d~~~~~~A~~~L~~fq~---------s~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~k 73 (930)
..++.+. ...+-. ..+.+.+..|-+-|+.+-. +-.+|......|++. +.++|-.||.++-+-
T Consensus 78 ~~~~~~~~~~~~~~~~s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~------~~~lR~~Aa~Vigt~ 151 (342)
T KOG2160|consen 78 ISDVMSMIPIVILNSSSVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENS------DAELRELAARVIGTA 151 (342)
T ss_pred HHHHHHhhhhhccCcccCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCC------cHHHHHHHHHHHHHH
Confidence 3444444 333432 4577788888887777665 456788888877654 469999999999999
Q ss_pred hccCcCCCChHHHHHHH----HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhc
Q 002370 74 IQNEGYYLQSAAKDALL----NALLVAAKRFSSGPPQLLTQICLALSALILRAV 123 (930)
Q Consensus 74 i~~~~~~l~~e~~~~lr----~~Ll~~l~~~~~~~~~v~~kL~~~La~l~~~~~ 123 (930)
.++. |..+-.-+. ..|+..+. ..++-.+++|.--+++.+.....
T Consensus 152 ~qNN----P~~Qe~v~E~~~L~~Ll~~ls--~~~~~~~r~kaL~AissLIRn~~ 199 (342)
T KOG2160|consen 152 VQNN----PKSQEQVIELGALSKLLKILS--SDDPNTVRTKALFAISSLIRNNK 199 (342)
T ss_pred HhcC----HHHHHHHHHcccHHHHHHHHc--cCCCchHHHHHHHHHHHHHhcCc
Confidence 9874 333333333 33444444 25677899999888988887753
No 89
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.07 E-value=7.7e+02 Score=28.56 Aligned_cols=233 Identities=13% Similarity=0.165 Sum_probs=111.9
Q ss_pred hhhHHHHHHHhhhhccccCCCccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHhchh---ch--HHH
Q 002370 456 EVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQT---NA--RPL 530 (930)
Q Consensus 456 ~~Ea~L~~l~~iae~~~~~~~~~~l~~i~~~l~~l~~~~~~~~~~~~~v~~~t~~~~ig~y~~wl~~~p~---~L--~~v 530 (930)
++|| -|+|.-||.+-.+......-...+.++..+...|+.. |+-.++ |.+|..+. ..|. |. ..+
T Consensus 127 q~eA-AWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~------v~eQav-WALgNIag---ds~~~Rd~vl~~g~ 195 (514)
T KOG0166|consen 127 QFEA-AWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSAD------VREQAV-WALGNIAG---DSPDCRDYVLSCGA 195 (514)
T ss_pred HHHH-HHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHH------HHHHHH-HHHhcccc---CChHHHHHHHhhcc
Confidence 4555 6889888876654332110011122233444455432 455564 88887664 2332 21 233
Q ss_pred HHHHHHhccccc---hhHHHHHHHHHHHHHhhcccCCCccHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHHHccCCch
Q 002370 531 LLFLAAGISEAV---SSNACASALRKICEDASALIDEPSNLEILMWIGEALEK--RHLPLEDEEEVVGAISLILGSVSNK 605 (930)
Q Consensus 531 l~~l~~~l~~p~---v~~~Aa~al~~lc~~c~~~l~~p~~~~~l~~~~~~l~~--~~l~~~~~~~l~eai~~vi~~~p~~ 605 (930)
+.-++..+..+. ..+.+..++.+||+.... ++.++.+..+...+.. ...+.+......=+++++...-+ +
T Consensus 196 l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P----~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~n-e 270 (514)
T KOG0166|consen 196 LDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNP----SPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSN-E 270 (514)
T ss_pred hHHHHHHhccccchHHHHHHHHHHHHHHcCCCC----CCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCh-H
Confidence 444455445432 578899999999987652 2244444444443321 23356666666777777764433 2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCchhhHHHHHHhHHHHHhhhcccccccccCCCCCCCCchHHHHHHHHH
Q 002370 606 ELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFW 685 (930)
Q Consensus 606 ~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~l~~i~~~l~~~~~~~~~~~~p~~~~~~~i~ 685 (930)
. .... +-...+.++..++...... .+ . -.+..++.|..+... ..-.-+-...+
T Consensus 271 ~-iq~v---i~~gvv~~LV~lL~~~~~~-v~-~------------PaLRaiGNIvtG~d~---------QTq~vi~~~~L 323 (514)
T KOG0166|consen 271 K-IQMV---IDAGVVPRLVDLLGHSSPK-VV-T------------PALRAIGNIVTGSDE---------QTQVVINSGAL 323 (514)
T ss_pred H-HHHH---HHccchHHHHHHHcCCCcc-cc-c------------HHHhhccceeeccHH---------HHHHHHhcChH
Confidence 2 1111 1223445555555443210 11 1 123344433322110 00001113456
Q ss_pred HHHHHHHHhhhccchHHHHHHHHHHHHHHHHhhhhh-----HhhHHHHHHHHH
Q 002370 686 PMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQHF-----VTLLPQVLDCLS 733 (930)
Q Consensus 686 ~~l~~i~~~~~~~~~~v~e~~c~~~~~~i~~l~~~~-----~p~l~~l~~~l~ 733 (930)
|.+..++.. ... ..+...+|-.+..+..--..+. ..++|.++..+.
T Consensus 324 ~~l~~ll~~-s~~-~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~ 374 (514)
T KOG0166|consen 324 PVLSNLLSS-SPK-ESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQ 374 (514)
T ss_pred HHHHHHhcc-Ccc-hhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHh
Confidence 777777752 222 2366778888877644222222 245666666554
No 90
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=33.64 E-value=1.2e+03 Score=30.17 Aligned_cols=67 Identities=16% Similarity=0.150 Sum_probs=47.0
Q ss_pred hhHHHHHHHHHHHHHhccccccCcchhcccchHHHHHHhcCCC--CcHHHHHHHHHHHHhccCC--------hhHHHHhh
Q 002370 211 DRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSLQVQ--SSFDVAIEVLVELVGRHEG--------LPQALLCR 280 (930)
Q Consensus 211 ~~~~~~l~c~~sWi~~~~~~~~~~~~i~~~~ll~~l~~~L~~~--~~~~~a~~~l~ei~~~~~~--------~~~~l~~~ 280 (930)
..+.+||+-+...-.+.+ ++.....+++.+.+++.|+ +++..|+++|++++..-++ |++.|+|.
T Consensus 438 ~tK~~ALeLl~~lS~~i~------de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~ 511 (1431)
T KOG1240|consen 438 QTKLAALELLQELSTYID------DEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPH 511 (1431)
T ss_pred hhHHHHHHHHHHHhhhcc------hHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhh
Confidence 355667777766666532 2334567899999999876 6678999999999986543 55777776
Q ss_pred hhh
Q 002370 281 VPF 283 (930)
Q Consensus 281 ~~~ 283 (930)
+-.
T Consensus 512 L~~ 514 (1431)
T KOG1240|consen 512 LNH 514 (1431)
T ss_pred hHh
Confidence 543
No 91
>PRK10236 hypothetical protein; Provisional
Probab=33.38 E-value=80 Score=32.01 Aligned_cols=60 Identities=13% Similarity=0.242 Sum_probs=37.0
Q ss_pred HHHHHHHHHhccCCChHHHHHHHHHHH---Hhhc---ChHHHHHHHHhhccCCCCCCccchhHHhhhHHhHHHhccC
Q 002370 7 IKVAQAVHVLNHDTESCNRVAANQWLV---QFQQ---TDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNE 77 (930)
Q Consensus 7 ~~v~~av~~ly~~~d~~~~~~A~~~L~---~fq~---s~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~ki~~~ 77 (930)
+++...+..|-++.|-. .+..+-|. .+++ .+.-..--|+++. .+.|+||+.++.+.++..
T Consensus 20 edL~~Lv~~Lt~d~dG~--~R~te~lt~~~~yk~~~~~~~~~~~yw~~Ia---------~elq~fGgnt~~n~lRG~ 85 (237)
T PRK10236 20 EQLANFARLLTHNEKGK--TRLSSVLMRNELFKSMEGHPEQHRRNWQLIA---------GELQHFGGDSIANKLRGH 85 (237)
T ss_pred HHHHHHHHHHhcCCCCC--EeehhhhcccHHHHhhcccchhHHHHHHHHH---------HHHHHhcchHHHHHHhcC
Confidence 57888888886655432 23334444 4555 4333333344553 399999999999888743
No 92
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=33.17 E-value=1e+03 Score=29.57 Aligned_cols=205 Identities=15% Similarity=0.148 Sum_probs=96.4
Q ss_pred HHHHHHH---hhcChHHHHHHHHhhccCCCCCCccchhHHhhhHHhHHHhccCcCCCC---hHHHHHHHHHHHHHHHH-h
Q 002370 28 ANQWLVQ---FQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQ---SAAKDALLNALLVAAKR-F 100 (930)
Q Consensus 28 A~~~L~~---fq~s~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~ki~~~~~~l~---~e~~~~lr~~Ll~~l~~-~ 100 (930)
...|+.+ .+.+|++-.++..++..-+.|+..+..++-|.--+-..---...+.-. .=-++-....+...+.+ +
T Consensus 797 ~l~Wv~KaLl~R~~~~s~~ia~klld~Ls~~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF~~ivP~l~~~~ 876 (1030)
T KOG1967|consen 797 VLAWVTKALLLRNHPESSEIAEKLLDLLSGPSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFFCDIVPILVSKF 876 (1030)
T ss_pred HHHHHHHHHHHcCCcccchHHHHHHHhcCCccccchHHHhhHhhhccChHHhhhccccchhHHHHHHHHHhhHHHHHHHh
Confidence 4456665 577888888888887765544455555666554433222111111111 01112222222222222 2
Q ss_pred cCCCHHHHHHHHHHHHHHHHHhc------ccCchHHHHHHHhhcccCCCchhHHHHHHHhhhhcccccccccccCCCHHH
Q 002370 101 SSGPPQLLTQICLALSALILRAV------EHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDSQASDCNISSAH 174 (930)
Q Consensus 101 ~~~~~~v~~kL~~~La~l~~~~~------~W~~~i~~li~~~~~~~~~~~~~~~~L~iL~~l~EE~~~~~~~~~~l~~~~ 174 (930)
...+..++.-+-.+|+.+.-+.+ .-|..++-+++.++-. +.....-.++.+..+--|.. . +
T Consensus 877 ~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~--D~~v~vstl~~i~~~l~~~~---t----L---- 943 (1030)
T KOG1967|consen 877 ETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMP--DVIVRVSTLRTIPMLLTESE---T----L---- 943 (1030)
T ss_pred ccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCC--ccchhhhHhhhhhHHHHhcc---c----c----
Confidence 22233344444444554444432 2344455555555431 11111122333322222221 0 1
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHhhccCCCCCcchhhhHHHHHHHHHHHHHhccccccCcchh--cccchHHHHHHhcCC
Q 002370 175 RSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSL--AAHPLLNFVFNSLQV 252 (930)
Q Consensus 175 r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~c~~sWi~~~~~~~~~~~~i--~~~~ll~~l~~~L~~ 252 (930)
+..+...++..+..+-..+++ ....++..||+|+.+-.+. .|...+ .....+..+...|+|
T Consensus 944 -------~t~~~~Tlvp~lLsls~~~~n-----~~~~VR~~ALqcL~aL~~~-----~P~~~l~~fr~~Vl~al~k~LdD 1006 (1030)
T KOG1967|consen 944 -------QTEHLSTLVPYLLSLSSDNDN-----NMMVVREDALQCLNALTRR-----LPTKSLLSFRPLVLRALIKILDD 1006 (1030)
T ss_pred -------chHHHhHHHHHHHhcCCCCCc-----chhHHHHHHHHHHHHHhcc-----CCCcccccccHHHHHHhhhccCc
Confidence 122455666666544333221 1246899999999999884 344443 355667777777777
Q ss_pred CC--cHHHHHHH
Q 002370 253 QS--SFDVAIEV 262 (930)
Q Consensus 253 ~~--~~~~a~~~ 262 (930)
+. ++..|++|
T Consensus 1007 kKRlVR~eAv~t 1018 (1030)
T KOG1967|consen 1007 KKRLVRKEAVDT 1018 (1030)
T ss_pred HHHHHHHHHHHH
Confidence 63 34555554
No 93
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=31.52 E-value=4.6e+02 Score=29.16 Aligned_cols=53 Identities=15% Similarity=0.201 Sum_probs=34.2
Q ss_pred hHHHHHHHHHHHHHh--ccccccCcchhcccchHHHHHHhc--CCCCcHHHHHHHHHHHHhccC
Q 002370 212 RNRKILRCLLSWVRA--GCFTEISQGSLAAHPLLNFVFNSL--QVQSSFDVAIEVLVELVGRHE 271 (930)
Q Consensus 212 ~~~~~l~c~~sWi~~--~~~~~~~~~~i~~~~ll~~l~~~L--~~~~~~~~a~~~l~ei~~~~~ 271 (930)
=+.+||+-+..|+.+ |.. .+|. .++..+.... .++.++..|+++++|+.-...
T Consensus 84 ER~QALkliR~~l~~~~~~~-~~~~------~vvralvaiae~~~D~lr~~cletL~El~l~~P 140 (371)
T PF14664_consen 84 EREQALKLIRAFLEIKKGPK-EIPR------GVVRALVAIAEHEDDRLRRICLETLCELALLNP 140 (371)
T ss_pred HHHHHHHHHHHHHHhcCCcc-cCCH------HHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCH
Confidence 477999999999998 321 2222 2333333333 345678889999998876543
No 94
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=30.07 E-value=3.5e+02 Score=23.13 Aligned_cols=69 Identities=10% Similarity=0.035 Sum_probs=46.5
Q ss_pred HHHHHHhccccc--hhHHHHHHHHHHHHHhh-cccCCCccHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHccCCc
Q 002370 531 LLFLAAGISEAV--SSNACASALRKICEDAS-ALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGSVSN 604 (930)
Q Consensus 531 l~~l~~~l~~p~--v~~~Aa~al~~lc~~c~-~~l~~p~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~vi~~~p~ 604 (930)
++-.+..+++|. ++.+|-..++++.++.. .. ...+.+..+....... -+....+..+.|++.++...|.
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~----~~~~~il~l~l~~L~d-~DsyVYL~aI~~L~~La~~~p~ 76 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKSEPV----IDIPKILDLFLSQLKD-EDSYVYLNAIKGLAALADRHPD 76 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCCcch----hhHHHHHHHHHHHcCC-CCchHHHHHHHHHHHHHHHChH
Confidence 334445556654 89999999999998877 21 2455555554432221 2566788999999999988876
No 95
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=29.98 E-value=1.7e+03 Score=31.03 Aligned_cols=275 Identities=15% Similarity=0.148 Sum_probs=130.5
Q ss_pred hHHHHHHHHHHHHhhc-ChHHHH---------HHHHhhccCCCCCCccchhHHhhhHHhHHHhccCcCCCChHHHHHHHH
Q 002370 22 SCNRVAANQWLVQFQQ-TDAAWE---------IATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKDALLN 91 (930)
Q Consensus 22 ~~~~~~A~~~L~~fq~-s~~aW~---------~~~~LL~~~~~~~~~~~~v~ffaA~tL~~ki~~~~~~l~~e~~~~lr~ 91 (930)
.+.|.+|=.-|..+-. +++.|+ ....+|.++ +.++|-.|+.+|++-... +++++..+.+
T Consensus 418 ~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~------s~~iQ~~A~~~L~nLa~~-----ndenr~aIie 486 (2102)
T PLN03200 418 ADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLS------SEQQQEYAVALLAILTDE-----VDESKWAITA 486 (2102)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCC------CHHHHHHHHHHHHHHHcC-----CHHHHHHHHH
Confidence 4555555555554443 355444 456666653 358888998888765542 3344443333
Q ss_pred H-HHHHHHHh-cCCCHHHHHHHHHHHHHHHHHhcc------cCchHHHHHHHhhcccCCCchhHHHHHHHhhhhcccccc
Q 002370 92 A-LLVAAKRF-SSGPPQLLTQICLALSALILRAVE------HGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDS 163 (930)
Q Consensus 92 ~-Ll~~l~~~-~~~~~~v~~kL~~~La~l~~~~~~------W~~~i~~li~~~~~~~~~~~~~~~~L~iL~~l~EE~~~~ 163 (930)
. .+..|.+. ..+...++..-+-+|..+.....+ =...++-++..+.++ +.......+..|..+...-
T Consensus 487 aGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sg--d~~~q~~Aa~AL~nLi~~~--- 561 (2102)
T PLN03200 487 AGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNG--GPKGQEIAAKTLTKLVRTA--- 561 (2102)
T ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCC--CHHHHHHHHHHHHHHHhcc---
Confidence 2 33333332 235567888888888888763211 123344444444432 1222223333333322110
Q ss_pred cccccCCCHHHHHHHHHHHHhhhhHHHHHHHHHHhhccCCCCCcchhhhHHHHHHHHHHHHHhccccccCcchhcccchH
Q 002370 164 QASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLL 243 (930)
Q Consensus 164 ~~~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~c~~sWi~~~~~~~~~~~~i~~~~ll 243 (930)
-+.++.-+...+.. ++..+...+++.+..-+..+....+-........-+
T Consensus 562 ----------------------d~~~I~~Lv~LLls--------dd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL 611 (2102)
T PLN03200 562 ----------------------DAATISQLTALLLG--------DLPESKVHVLDVLGHVLSVASLEDLVREGSAANDAL 611 (2102)
T ss_pred ----------------------chhHHHHHHHHhcC--------CChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccH
Confidence 01111112222222 223456666776666555431000000001123466
Q ss_pred HHHHHhcCC--CCcHHHHHHHHHHHHhccCChhHHHH-----hhhhhhHHhhhchhhccCcHhHHhhHHHHHHHHHHh--
Q 002370 244 NFVFNSLQV--QSSFDVAIEVLVELVGRHEGLPQALL-----CRVPFLKELLLLPALTDGDEKVIGGLACLMSEIGQA-- 314 (930)
Q Consensus 244 ~~l~~~L~~--~~~~~~a~~~l~ei~~~~~~~~~~l~-----~~~~~l~~~~~~~~~~~~d~d~~~~l~~l~~~~~e~-- 314 (930)
+.+.+.|.+ ++....|+.+|..+.....+..+.++ |.++. .+...+.+..+..+.-+..+...
T Consensus 612 ~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~--------LLss~~~~v~keAA~AL~nL~~~~~ 683 (2102)
T PLN03200 612 RTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIK--------LLTNNTEAVATQSARALAALSRSIK 683 (2102)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHH--------HHhcCChHHHHHHHHHHHHHHhCCC
Confidence 777777764 46678889899888876655443322 22222 22344555555555554444321
Q ss_pred --hhHHHHhcChhHHHHHHHHHhcccCCCCCchhhhhcHHHHHHH
Q 002370 315 --APSLIVEASPEALALADALLSCVAFPSEDWEIADSTLQFWSTL 357 (930)
Q Consensus 315 --~~~~l~~~~~~~~~ll~~ll~~~~~p~~d~~v~~~~~~fW~~l 357 (930)
....+.+ ...+..|+.+...+ +.++.+.++.--..+
T Consensus 684 ~~q~~~~v~-----~GaV~pL~~LL~~~--d~~v~e~Al~ALanL 721 (2102)
T PLN03200 684 ENRKVSYAA-----EDAIKPLIKLAKSS--SIEVAEQAVCALANL 721 (2102)
T ss_pred HHHHHHHHH-----cCCHHHHHHHHhCC--ChHHHHHHHHHHHHH
Confidence 1111111 12344455555554 566666665544443
No 96
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.67 E-value=1.5e+03 Score=30.14 Aligned_cols=112 Identities=11% Similarity=0.135 Sum_probs=68.2
Q ss_pred cCchHHHHHHHHhhhcCCCCCCCchhhhHHHHHHHhhhhccccCCCccchhHHHHHHHHhcc---CchhhhhhHHHHHHH
Q 002370 431 LRSATFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSA---SRSEELKGFMHIVYR 507 (930)
Q Consensus 431 l~~~~~l~~~~~~~~~~~~~~~~W~~~Ea~L~~l~~iae~~~~~~~~~~l~~i~~~l~~l~~---~~~~~~~~~~~v~~~ 507 (930)
+|.+..+++ |-.+.. .+..|...-.+-|.+++|++.-.+... |.+-++++.+-. +|... |+.+
T Consensus 952 l~qPdLVYK-FM~LAn---h~A~wnSk~GaAfGf~~i~~~a~~kl~----p~l~kLIPrLyRY~yDP~~~------Vq~a 1017 (1702)
T KOG0915|consen 952 LGQPDLVYK-FMQLAN---HNATWNSKKGAAFGFGAIAKQAGEKLE----PYLKKLIPRLYRYQYDPDKK------VQDA 1017 (1702)
T ss_pred cCChHHHHH-HHHHhh---hhchhhcccchhhchHHHHHHHHHhhh----hHHHHhhHHHhhhccCCcHH------HHHH
Confidence 565554444 333321 245699999999999999876643332 666677776643 34322 3332
Q ss_pred HHHHHHHhhHHH-HHhchhchHHHHHHHHHhccccc--hhHHHHHHHHHHHHH
Q 002370 508 SLADVIGSYSKW-ISAFQTNARPLLLFLAAGISEAV--SSNACASALRKICED 557 (930)
Q Consensus 508 t~~~~ig~y~~w-l~~~p~~L~~vl~~l~~~l~~p~--v~~~Aa~al~~lc~~ 557 (930)
.. .+-+....= =..-.+|+..++.-++.++.+.+ |+.++|.|+..+-+.
T Consensus 1018 M~-sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g 1069 (1702)
T KOG0915|consen 1018 MT-SIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQG 1069 (1702)
T ss_pred HH-HHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcC
Confidence 21 111111100 00113588899999999998865 999999999999875
No 97
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=29.05 E-value=79 Score=22.01 Aligned_cols=27 Identities=15% Similarity=0.033 Sum_probs=19.9
Q ss_pred HHHHHHHhccc--cchhHHHHHHHHHHHH
Q 002370 530 LLLFLAAGISE--AVSSNACASALRKICE 556 (930)
Q Consensus 530 vl~~l~~~l~~--p~v~~~Aa~al~~lc~ 556 (930)
+++.|+.-+.+ ++++..|+.|+.++|.
T Consensus 13 ~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 13 GIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp HHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 45556666664 4599999999999873
No 98
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=28.60 E-value=4.5e+02 Score=25.81 Aligned_cols=53 Identities=23% Similarity=0.315 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHH---hhhhhHhhHHHHHHHH
Q 002370 677 IFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQS---SGQHFVTLLPQVLDCL 732 (930)
Q Consensus 677 ~~~~~~~i~~~l~~i~~~~~~~~~~v~e~~c~~~~~~i~~---l~~~~~p~l~~l~~~l 732 (930)
+++++-++.+-+.+.+. ..|.+|+.++..++++.+++ .|+...|++..++..+
T Consensus 74 ilPvlPqLI~plk~AL~---tr~~~V~~~~L~~Lq~Lv~~~~~vG~aLvPyyrqLLp~l 129 (183)
T PF10274_consen 74 ILPVLPQLIIPLKRALN---TRDPEVFCATLKALQQLVTSSDMVGEALVPYYRQLLPVL 129 (183)
T ss_pred HHHHHHHHHHHHHHHHh---CCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 55555555555555543 36899999999999999665 5777777777666544
No 99
>PF14911 MMS22L_C: S-phase genomic integrity recombination mediator, C-terminal
Probab=27.49 E-value=8.8e+02 Score=26.89 Aligned_cols=93 Identities=9% Similarity=0.126 Sum_probs=54.8
Q ss_pred CchHHHHHHHHHHHHhh-----hhHHHHhhchhchHHHHHHHHHhhccCchhHHHHHHHHHHHHHhhhhhhccCCCCCCC
Q 002370 792 PDLVEAYTNFASTFVRT-----SRKEVLAASGALLEVSFQKAAICCTAMHRGAALAAMSYLSCFLEECLASLLGYTTSIP 866 (930)
Q Consensus 792 pD~~~~~f~l~~~~l~~-----~p~~~~~s~~~~l~~~l~~~l~~l~~~e~~~~~a~~~fl~~li~~~~~~~~~~~~~~~ 866 (930)
|--...-+.|+..+++. ......-. ...+..++.|.+.+ ..++...+-+..++..+++.+... .+..+
T Consensus 225 ~p~l~~vL~fl~~Ll~~~~~~~~~~~~~~~-~~~lp~lL~c~~~v--~e~~~~k~~a~e~l~~mv~~~~~~----~~~~~ 297 (373)
T PF14911_consen 225 PPRLASVLAFLQQLLKRLQRQNENQILTLL-RLVLPSLLECLMLV--NEEPQVKKLATELLQYMVESCQVG----SSGEP 297 (373)
T ss_pred CCcHHHHHHHHHHHHHhcCcccchhHHHHH-HHhhHHHHHHHhhc--CCCcchhHHHHHHHHHHHHccccc----CcchH
Confidence 44666777777777777 22221111 12345566654422 337778889999999999876631 11112
Q ss_pred CccHHHHHHHHHHhhhHHHHHHHHH
Q 002370 867 EGSFNAMAIQVISHSGEGLVSNVVY 891 (930)
Q Consensus 867 ~~~~~~~~~~~l~~~G~~lv~~ll~ 891 (930)
.++....+++++.+|+..-...++.
T Consensus 298 ~~~l~s~lrsfvqk~l~~~t~~~f~ 322 (373)
T PF14911_consen 298 REQLTSVLRSFVQKYLAHYTYQYFQ 322 (373)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 2356778888888888754444443
No 100
>PF12030 DUF3517: Domain of unknown function (DUF3517); InterPro: IPR021905 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 340 amino acids in length. This domain is found associated with PF00443 from PFAM.
Probab=27.44 E-value=8.4e+02 Score=26.66 Aligned_cols=52 Identities=13% Similarity=-0.024 Sum_probs=30.5
Q ss_pred hhccCchhHHHHHHHHHHHHHhhhhhhccCCCCCCCCccHHHHHHHHHHhhhHHHHHHHHHHh
Q 002370 831 CCTAMHRGAALAAMSYLSCFLEECLASLLGYTTSIPEGSFNAMAIQVISHSGEGLVSNVVYAL 893 (930)
Q Consensus 831 ~l~~~e~~~~~a~~~fl~~li~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~lv~~ll~~~ 893 (930)
-|...++.+-..+-.||..++-.... .+. .+..++...+.++.|..+++.-+
T Consensus 246 LL~y~d~~VR~~Te~fL~~~lF~~~~-----~~~------~~d~~~~~~~~~R~Lg~~Cl~yL 297 (337)
T PF12030_consen 246 LLGYPDRSVRNGTEDFLQELLFSKEA-----EDD------DEDTRQRYREIARQLGQACLEYL 297 (337)
T ss_pred hhCCCchhHHHHHHHHHHHHhCCCCc-----ccc------ChHHHHHHHHHHHHHHHHHHHHH
Confidence 35678899999999999987653221 111 11223344555666666666544
No 101
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=27.39 E-value=2.2e+02 Score=27.55 Aligned_cols=56 Identities=11% Similarity=0.040 Sum_probs=42.2
Q ss_pred CchHHHHHHHHHHHHhhhhHHHHhhchhchHHHHHHHHHhhccCchhHHHHHHHHHHHHHhhh
Q 002370 792 PDLVEAYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICCTAMHRGAALAAMSYLSCFLEEC 854 (930)
Q Consensus 792 pD~~~~~f~l~~~~l~~~p~~~~~s~~~~l~~~l~~~l~~l~~~e~~~~~a~~~fl~~li~~~ 854 (930)
=|++...|+++..++..|+..+- +..+++.+..|+.- |.++.--+...+..+....
T Consensus 41 LelRK~ayE~lytlLd~~~~~~~------~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~ 96 (169)
T PF08623_consen 41 LELRKAAYECLYTLLDTCLSRID------ISEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLA 96 (169)
T ss_dssp GHHHHHHHHHHHHHHHSTCSSS-------HHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC------HHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhC
Confidence 57899999999999997765532 34467788888876 8888888888888887654
No 102
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=26.74 E-value=3e+02 Score=24.26 Aligned_cols=49 Identities=18% Similarity=0.214 Sum_probs=34.2
Q ss_pred HHHHHHHHhhhccchHHHHHHHHHHHHHHHHhhh-hhHhhHHHHHHHHHHh
Q 002370 686 PMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQ-HFVTLLPQVLDCLSTN 735 (930)
Q Consensus 686 ~~l~~i~~~~~~~~~~v~e~~c~~~~~~i~~l~~-~~~p~l~~l~~~l~~~ 735 (930)
|-+.+.+. ..-...++.+.+++++...++.+++ +..|++++++-.++..
T Consensus 55 pQI~a~L~-sal~~~~l~~~al~~W~~fi~~L~~~~l~~ll~~~~~~l~~~ 104 (107)
T PF08064_consen 55 PQIMACLQ-SALEIPELREEALSCWNCFIKTLDEEDLGPLLDQIFAILLPL 104 (107)
T ss_pred HHHHHHHH-HHhCChhhHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHh
Confidence 44444443 2233458999999999999999865 6778888777666543
No 103
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=26.35 E-value=5e+02 Score=25.51 Aligned_cols=85 Identities=16% Similarity=0.232 Sum_probs=52.8
Q ss_pred cchhHHHHHHHHHHHHHhhcccCC------C--ccH-------HHHHHHHHHHH---hcCCChhhHHHHHHHHHHHHccC
Q 002370 541 AVSSNACASALRKICEDASALIDE------P--SNL-------EILMWIGEALE---KRHLPLEDEEEVVGAISLILGSV 602 (930)
Q Consensus 541 p~v~~~Aa~al~~lc~~c~~~l~~------p--~~~-------~~l~~~~~~l~---~~~l~~~~~~~l~eai~~vi~~~ 602 (930)
++++.+|+.++..+-+.++..+.. + .+. ..+.++...+. ...-.......++++++.++++-
T Consensus 54 ~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~t 133 (182)
T PF13251_consen 54 PKVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQAT 133 (182)
T ss_pred hhHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccC
Confidence 448999999998887777654421 0 111 22334444332 12223446678899999999999
Q ss_pred CchHHHHHHHHHHHHHHHHHHHhhhhc
Q 002370 603 SNKELKNNLLARLLSSSYEAIGKLIDG 629 (930)
Q Consensus 603 p~~~~~~~~l~~ll~p~~~~l~~~~~~ 629 (930)
|.++... .++.+++..+...+..
T Consensus 134 PY~rL~~----~ll~~~v~~v~~~l~~ 156 (182)
T PF13251_consen 134 PYHRLPP----GLLTEVVTQVRPLLRH 156 (182)
T ss_pred ChhhcCH----hHHHHHHHHHHHHHhc
Confidence 9987443 5566666666666654
No 104
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=25.75 E-value=1.2e+03 Score=29.99 Aligned_cols=143 Identities=12% Similarity=0.096 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHHhc--ccCch-HHHHHHHhhcccCCCchhHHHHHHHhhhhcc
Q 002370 84 AAKDALLNALLVAAKRFSSGP-PQLLTQICLALSALILRAV--EHGKP-IEKLFYSLQNLQSQDNGNMAVLEMLTVLPEE 159 (930)
Q Consensus 84 e~~~~lr~~Ll~~l~~~~~~~-~~v~~kL~~~La~l~~~~~--~W~~~-i~~li~~~~~~~~~~~~~~~~L~iL~~l~EE 159 (930)
...+.|...+=++...+..++ +.|++.|-..++.|..-+. .=.|. +.+++.-++..
T Consensus 570 ~~~~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDk-------------------- 629 (1431)
T KOG1240|consen 570 TELQALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDK-------------------- 629 (1431)
T ss_pred hHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCc--------------------
Confidence 456667766666666655555 5888989888777765554 12233 33444433321
Q ss_pred cccccccccCCCHHHHHHHHHHHHh---------hhhHHHHHHHHHHhhccCCCCCcchhhhHHHHHHHHHHHHHhcccc
Q 002370 160 VIDSQASDCNISSAHRSQYGQELLS---------HTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFT 230 (930)
Q Consensus 160 ~~~~~~~~~~l~~~~r~~~~~~l~~---------~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~c~~sWi~~~~~~ 230 (930)
.+.-|..+.+.+.. -.+.++.+|.+.++. +.+.+...||+|+..-++.|-
T Consensus 630 -----------Dw~LR~aFfdsI~gvsi~VG~rs~seyllPLl~Q~ltD--------~EE~Viv~aL~~ls~Lik~~l-- 688 (1431)
T KOG1240|consen 630 -----------DWRLRGAFFDSIVGVSIFVGWRSVSEYLLPLLQQGLTD--------GEEAVIVSALGSLSILIKLGL-- 688 (1431)
T ss_pred -----------cHHHHHHHHhhccceEEEEeeeeHHHHHHHHHHHhccC--------cchhhHHHHHHHHHHHHHhcc--
Confidence 11223333333321 134455666665554 234688999999999999872
Q ss_pred ccCcchhcccchHHHHHHhcCCC--CcHHHHHHHHHHHHhcc
Q 002370 231 EISQGSLAAHPLLNFVFNSLQVQ--SSFDVAIEVLVELVGRH 270 (930)
Q Consensus 231 ~~~~~~i~~~~ll~~l~~~L~~~--~~~~~a~~~l~ei~~~~ 270 (930)
+..- .--.+++.++-.|-.| -++.+++..|.++..+-
T Consensus 689 -l~K~--~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~l 727 (1431)
T KOG1240|consen 689 -LRKP--AVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQL 727 (1431)
T ss_pred -cchH--HHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhhh
Confidence 2221 2234666666666666 44678888888887754
No 105
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=24.96 E-value=2.8e+02 Score=24.14 Aligned_cols=91 Identities=18% Similarity=0.061 Sum_probs=52.0
Q ss_pred cCCChHHHHHHHHHHHHhhcC-h---------HHHHHHHHhhccCCCCCCccchhHHhhhHHhHHHhccCcCCCChHHHH
Q 002370 18 HDTESCNRVAANQWLVQFQQT-D---------AAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKD 87 (930)
Q Consensus 18 ~~~d~~~~~~A~~~L~~fq~s-~---------~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~ki~~~~~~l~~e~~~ 87 (930)
..+++..|..|-..|..+-.. | ++++....+|.++ +..++..++.+|.+-..... +...
T Consensus 17 ~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~------~~~v~~~a~~~L~~l~~~~~-----~~~~ 85 (120)
T cd00020 17 SSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE------DEEVVKAALWALRNLAAGPE-----DNKL 85 (120)
T ss_pred HcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCC------CHHHHHHHHHHHHHHccCcH-----HHHH
Confidence 345566777777666665543 2 5555666677653 36888888888888765421 2222
Q ss_pred -HHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHH
Q 002370 88 -ALLNALLVAAKRFS-SGPPQLLTQICLALSALI 119 (930)
Q Consensus 88 -~lr~~Ll~~l~~~~-~~~~~v~~kL~~~La~l~ 119 (930)
..+..++..+.+.- .++..++...+.+|..++
T Consensus 86 ~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 86 IVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 22222444443322 234567777777776553
No 106
>PF09184 PPP4R2: PPP4R2; InterPro: IPR015267 PPP4R2 (protein phosphatase 4 core regulatory subunit R2) is the regulatory subunit of the histone H2A phosphatase complex. It has been shown to confer resistance to the anticancer drug cisplatin in yeast [], and may confer resistance in higher eukaryotes.
Probab=24.96 E-value=4e+02 Score=28.36 Aligned_cols=108 Identities=13% Similarity=0.181 Sum_probs=67.7
Q ss_pred HHHHHHHHHhccCCChHHHHHHHHHHHHhhcCh---HHHHHHHHhhccCCCCCCccchhHHhhhHHhHHHhccCcCCCCh
Q 002370 7 IKVAQAVHVLNHDTESCNRVAANQWLVQFQQTD---AAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQS 83 (930)
Q Consensus 7 ~~v~~av~~ly~~~d~~~~~~A~~~L~~fq~s~---~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~ki~~~~~~l~~ 83 (930)
+.|.++++.+-.-...........+|...-++. ..|.....|+..-- ...--.||- ..-...+. .......
T Consensus 3 ~~~~~~l~~f~~~k~~~l~~~L~~il~~ia~tg~~~~~W~~lk~l~~~kl----~~v~~e~~~-~~p~~~~~-~~~~~~~ 76 (288)
T PF09184_consen 3 EELLDALENFMKIKSKELPPELEDILEHIAKTGETWYPWSLLKSLFRHKL----EKVIDEFFE-SAPEESGP-QNPNVEP 76 (288)
T ss_pred HHHHHHHHHhcCCCcccHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHHH----HHHHHHHHh-cCccccCC-CCCCcch
Confidence 567788888765444456678888888887763 46888777775421 011112220 00001111 1233445
Q ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q 002370 84 AAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILR 121 (930)
Q Consensus 84 e~~~~lr~~Ll~~l~~~~~~~~~v~~kL~~~La~l~~~ 121 (930)
..+..++..+..++..|.. +++.+.+||..|..=..+
T Consensus 77 ~~~~~~~~~~~~~~~~f~~-~PfTiqRlcEl~~~P~~~ 113 (288)
T PF09184_consen 77 EDYEEMKERILELLDSFDE-PPFTIQRLCELLLDPRKH 113 (288)
T ss_pred hhHHHHHHHHHHHHHhcCC-CChhHHHHHHHHhChhhc
Confidence 6788999999999998876 899999999876654433
No 107
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=21.87 E-value=1.3e+03 Score=27.01 Aligned_cols=172 Identities=17% Similarity=0.137 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHHHHHHhcCchHHHHHHHHhhhcCCCCCCCchhhhHHHHHHHh--hhhccccCCCccchhHHHHHHHHhc
Q 002370 414 VQFRMNLVELLVDICQLLRSATFIQKVFFGSWGSANVPIPWKEVETKLFALNV--VSEVVLQEGQAFDFSVIMQLVAVLS 491 (930)
Q Consensus 414 ~~~R~~~~d~l~~~~~~l~~~~~l~~~~~~~~~~~~~~~~W~~~Ea~L~~l~~--iae~~~~~~~~~~l~~i~~~l~~l~ 491 (930)
.+-|+...+++...+.++..+. +...+..+.... ..+-...+.|+..+++ +...+.+ . .+..|+.+|..-.
T Consensus 309 ~evr~a~~~~l~~~~svidN~d-I~~~ip~Lld~l--~dp~~~~~e~~~~L~~ttFV~~V~~-p---sLalmvpiL~R~l 381 (569)
T KOG1242|consen 309 PEVRKAGIETLLKFGSVIDNPD-IQKIIPTLLDAL--ADPSCYTPECLDSLGATTFVAEVDA-P---SLALMVPILKRGL 381 (569)
T ss_pred HHHHHHHHHHHHHHHHhhccHH-HHHHHHHHHHHh--cCcccchHHHHHhhcceeeeeeecc-h---hHHHHHHHHHHHH
Confidence 3566777788998888887654 333333322211 1123367788888875 3455532 1 1566767665433
Q ss_pred cCchhhhhhHHHHHHHHHHHHHHhhHHHHHhchhchHHHHHHHHHhcc----c--cchhHHHHHHHHHHHHHhhcccCCC
Q 002370 492 ASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGIS----E--AVSSNACASALRKICEDASALIDEP 565 (930)
Q Consensus 492 ~~~~~~~~~~~~v~~~t~~~~ig~y~~wl~~~p~~L~~vl~~l~~~l~----~--p~v~~~Aa~al~~lc~~c~~~l~~p 565 (930)
...... ....|+ .+++..+.-. ..|.-+.+.++-|++++. + |+++.-|++|+-.+-++-+..-. +
T Consensus 382 ~eRst~------~kr~t~-~IidNm~~Lv-eDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~~f-~ 452 (569)
T KOG1242|consen 382 AERSTS------IKRKTA-IIIDNMCKLV-EDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLERLGEVSF-D 452 (569)
T ss_pred hhccch------hhhhHH-HHHHHHHHhh-cCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhhcc-c
Confidence 221111 123353 6888887643 356656566666665554 3 78999999999888777664321 1
Q ss_pred ccHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHccCCch
Q 002370 566 SNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGSVSNK 605 (930)
Q Consensus 566 ~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~vi~~~p~~ 605 (930)
...+-+.... .......++....++++.++..+..+
T Consensus 453 d~~p~l~e~~----~~~k~~~~~~g~aq~l~evl~~~~v~ 488 (569)
T KOG1242|consen 453 DLIPELSETL----TSEKSLVDRSGAAQDLSEVLAGLGVE 488 (569)
T ss_pred ccccHHHHhh----ccchhhhhhHHHhhhHHHHHhcccch
Confidence 1222222221 11223456677778888888776554
No 108
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=21.84 E-value=3.1e+02 Score=27.63 Aligned_cols=55 Identities=13% Similarity=0.260 Sum_probs=44.7
Q ss_pred HhccCCChHHHHHHHHHHHHhhcC--hHHHHHHHHhhccCCCCCCccchhHHhhhHHhHHHhc
Q 002370 15 VLNHDTESCNRVAANQWLVQFQQT--DAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQ 75 (930)
Q Consensus 15 ~ly~~~d~~~~~~A~~~L~~fq~s--~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~ki~ 75 (930)
.+++-+.|..|+-|..++.+.+.. ++-|.++..|++++- -|.|++|...|..+..
T Consensus 19 ~f~Gv~~P~~R~lak~~~~~~~~~~~~~~~~l~~~Lw~~~~------~E~r~~al~~l~~~~~ 75 (208)
T cd07064 19 PFYGIKTPERRALSKPFLKESKLPDKEELWELVLELWQQPE------REYQYVAIDLLRKYKK 75 (208)
T ss_pred ccCCCChHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHcchH------HHHHHHHHHHHHHHHh
Confidence 366777899999999999988775 688999999997642 5899999988877544
No 109
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=21.39 E-value=5e+02 Score=23.00 Aligned_cols=49 Identities=18% Similarity=0.283 Sum_probs=34.0
Q ss_pred HHHHHHHHHhhhccchHHHHHHHHHHHHHHHHhhh-hhHhhHHHHHHHHHH
Q 002370 685 WPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQ-HFVTLLPQVLDCLST 734 (930)
Q Consensus 685 ~~~l~~i~~~~~~~~~~v~e~~c~~~~~~i~~l~~-~~~p~l~~l~~~l~~ 734 (930)
.|-+.+.+. ..-..+++.+.++++++..++.+.+ +..|++..++-.+..
T Consensus 54 ~pQI~acL~-saL~~~eL~~~al~~W~~~i~~L~~~~l~~ll~~~~~~i~~ 103 (107)
T smart00802 54 LPQIMACLQ-SALEIPELRSLALRCWHVLIKTLKEEELGPLLDQIFAAILP 103 (107)
T ss_pred HHHHHHHHH-HHhCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 344444444 2334678999999999999999865 567777776665554
No 110
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.03 E-value=1.4e+03 Score=26.81 Aligned_cols=228 Identities=14% Similarity=0.108 Sum_probs=118.0
Q ss_pred HHHHHHHHHHHhccCCChHH-HHHHHHHHHHhhcChHHHHHHHH---------hhccCCC--------C-----CCccch
Q 002370 5 LQIKVAQAVHVLNHDTESCN-RVAANQWLVQFQQTDAAWEIATS---------ILTSDRQ--------S-----FLTDFE 61 (930)
Q Consensus 5 ~~~~v~~av~~ly~~~d~~~-~~~A~~~L~~fq~s~~aW~~~~~---------LL~~~~~--------~-----~~~~~~ 61 (930)
.+-.+++.|..+..+.|-+. ++-.++-..+|-.||++-.-... -|..++. | ...+..
T Consensus 20 aalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~~iv~Pv~~cf~D~d~~ 99 (675)
T KOG0212|consen 20 AALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYLEKIVPPVLNCFSDQDSQ 99 (675)
T ss_pred HHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHHHHHHhhHHHHHhccCccce
Confidence 34578888888876666544 44455566778877776221111 1211110 0 134678
Q ss_pred hHHhhhHHhHHHhccCcCCCChHHHHHHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHHHHHHhc---ccCchHHH
Q 002370 62 VEFFAAQILKRKIQNEGYYLQSAAKDALLNALLVAAKRFSSGP-------PQLLTQICLALSALILRAV---EHGKPIEK 131 (930)
Q Consensus 62 v~ffaA~tL~~ki~~~~~~l~~e~~~~lr~~Ll~~l~~~~~~~-------~~v~~kL~~~La~l~~~~~---~W~~~i~~ 131 (930)
+||||.-.|++-.+---. ......+.+++.+.+...++ ...+.+|- -+++.... +-+.+++-
T Consensus 100 vRyyACEsLYNiaKv~k~-----~v~~~Fn~iFdvL~klsaDsd~~V~~~aeLLdRLi---kdIVte~~~tFsL~~~ipL 171 (675)
T KOG0212|consen 100 VRYYACESLYNIAKVAKG-----EVLVYFNEIFDVLCKLSADSDQNVRGGAELLDRLI---KDIVTESASTFSLPEFIPL 171 (675)
T ss_pred eeeHhHHHHHHHHHHhcc-----CcccchHHHHHHHHHHhcCCccccccHHHHHHHHH---HHhccccccccCHHHHHHH
Confidence 999999999875542111 12223344445444433221 22333332 22222211 22344444
Q ss_pred HHHHhhcccCCCchhHHHHHHHhhhhcccccccccccCCCHHHHHHHHHHHHhhhhHHHHHHHHHHhhccCCCCCcchhh
Q 002370 132 LFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHD 211 (930)
Q Consensus 132 li~~~~~~~~~~~~~~~~L~iL~~l~EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~ 211 (930)
+-+.+... ++..+..++..+++|-- .+. -+|....+.+++-|.+.++.. +.+
T Consensus 172 L~eriy~~--n~~tR~flv~Wl~~Lds-----------~P~-------~~m~~yl~~~ldGLf~~LsD~--------s~e 223 (675)
T KOG0212|consen 172 LRERIYVI--NPMTRQFLVSWLYVLDS-----------VPD-------LEMISYLPSLLDGLFNMLSDS--------SDE 223 (675)
T ss_pred HHHHHhcC--CchHHHHHHHHHHHHhc-----------CCc-------HHHHhcchHHHHHHHHHhcCC--------cHH
Confidence 44444432 45566677777777631 011 124455667777666666542 345
Q ss_pred hHHHHHHHHHHHHHhccccccCcchhcccchHHHHHHhcCC--CCcHHHHHHHHHHHHhccC
Q 002370 212 RNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSLQV--QSSFDVAIEVLVELVGRHE 271 (930)
Q Consensus 212 ~~~~~l~c~~sWi~~~~~~~~~~~~i~~~~ll~~l~~~L~~--~~~~~~a~~~l~ei~~~~~ 271 (930)
++..+=.|+..++.-. .-.++.+.....++.+...++. +.+...|+-.+.|++..+.
T Consensus 224 Vr~~~~t~l~~fL~eI---~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g 282 (675)
T KOG0212|consen 224 VRTLTDTLLSEFLAEI---RSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPG 282 (675)
T ss_pred HHHHHHHHHHHHHHHH---hcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCC
Confidence 6655555566655421 0112222345567777777764 4667789999999988664
No 111
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=20.56 E-value=1.8e+03 Score=28.12 Aligned_cols=234 Identities=19% Similarity=0.175 Sum_probs=0.0
Q ss_pred HHHHHHhhhHHHHhcCh-hHHHHHHHHHhcccCCC-------CCchhhhhcHHHHHHHHHHhhccchhhhhhhhhhhhhc
Q 002370 308 MSEIGQAAPSLIVEASP-EALALADALLSCVAFPS-------EDWEIADSTLQFWSTLASYILGLDASIAKNKKHVEDMF 379 (930)
Q Consensus 308 ~~~~~e~~~~~l~~~~~-~~~~ll~~ll~~~~~p~-------~d~~v~~~~~~fW~~l~~~l~~~~~~~~~~~~~~~~~~ 379 (930)
+.++...|...-.++.. -.+.++++++.|+|..| .+-+.+++++.--..+-+. +..++........+..|
T Consensus 94 i~~lv~~W~e~Yk~n~~~al~~linf~l~~cGck~~Vt~~~v~~~ds~~i~~~~~e~~~e~--es~DYpl~~~g~~~k~f 171 (1048)
T KOG2011|consen 94 IEELVDEWIEDYKENRDKALLELINFFLQCCGCKGRVTDFDVQDVDSSSITLSMTELFDER--ESGDYPLTSKGPEWKNF 171 (1048)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCcccccHHhhccccchHHHHHHHHHHhhh--hhccCcCCCCCHHHHHH
Q ss_pred HHHHHHHHHHHHHHhccCCCCCCCCCCCCC---------CchHHHHH-------HHHHHHHHHHHHhcCchH-HHHHHHH
Q 002370 380 FSVFSALLDALLLRAQVDESSFNDDGMVDL---------PDGLVQFR-------MNLVELLVDICQLLRSAT-FIQKVFF 442 (930)
Q Consensus 380 ~~~~~~Ll~~l~~k~~~p~~~~~~~~~~d~---------~d~f~~~R-------~~~~d~l~~~~~~l~~~~-~l~~~~~ 442 (930)
+..+..++..++.+++|..-.++ +..-|+ ....+.|| .++-..+.+...-++... -.+..++
T Consensus 172 r~~~~~fl~~lV~q~q~~s~l~d-~~lmd~~is~LtamSdSqvR~fRhTaTl~~mklmt~Lv~va~~Ls~~~~~tskQle 250 (1048)
T KOG2011|consen 172 RENFCEFLPTLVSQCQYGSCLFD-SFLMDDLISWLTAMSDSQVRAFRHTATLAAMKLMTALVSVALNLSSHNDKTSKQLE 250 (1048)
T ss_pred HHHHHHHHHHHHHHhccCCcccc-chhHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q ss_pred hhhcCCCCCCCchhhhHHHHHHHhhhhccccCCCccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHh
Q 002370 443 GSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISA 522 (930)
Q Consensus 443 ~~~~~~~~~~~W~~~Ea~L~~l~~iae~~~~~~~~~~l~~i~~~l~~l~~~~~~~~~~~~~v~~~t~~~~ig~y~~wl~~ 522 (930)
.=..-...... ++|+.+--..-..+...+-+ ..|-.+...+.-|.. +... +.+| +.+|-..+.|+..
T Consensus 251 aEr~k~r~~ra--rle~Ll~~r~etqe~~d~i~-----~mi~~if~sVFVHRY-RDV~-~~IR----aiCiqeLgiWi~~ 317 (1048)
T KOG2011|consen 251 AERNKSRGNRA--RLESLLMLRKETQEQQDEIE-----SMINDIFDSVFVHRY-RDVD-PDIR----AICIQELGIWIKS 317 (1048)
T ss_pred HHhcccccchH--HHHHHHHHHHHHHHHHHHHH-----HHHHHHhhheeeeec-ccCc-hHHH----HHHHHHHHHHHHh
Q ss_pred chhch--HHHHHHHHHhccccc--hhHHHHHHHHHHHHH
Q 002370 523 FQTNA--RPLLLFLAAGISEAV--SSNACASALRKICED 557 (930)
Q Consensus 523 ~p~~L--~~vl~~l~~~l~~p~--v~~~Aa~al~~lc~~ 557 (930)
-|+++ ..-|.|+=-.|++.. |+.++-+++.+|-+.
T Consensus 318 yP~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~ 356 (1048)
T KOG2011|consen 318 YPEIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEK 356 (1048)
T ss_pred ccHHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhc
Done!