Query 002370
Match_columns 930
No_of_seqs 196 out of 1033
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 23:35:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002370.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002370hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4hat_C Exportin-1; heat repeat 100.0 1.2E-83 4E-88 793.7 69.3 834 6-914 15-929 (1023)
2 3gjx_A Exportin-1; transport, 100.0 8.3E-83 2.8E-87 779.3 67.5 842 6-914 27-953 (1073)
3 2x1g_F Cadmus; transport prote 100.0 1.3E-83 4.4E-88 812.0 61.6 851 6-918 6-910 (971)
4 3ibv_A Exportin-T; karyopherin 100.0 2.3E-82 7.8E-87 782.8 68.2 791 6-854 5-872 (980)
5 2x19_B Importin-13; nuclear tr 100.0 7.9E-79 2.7E-83 769.0 77.2 843 5-918 22-898 (963)
6 3m1i_C Exportin-1; heat repeat 100.0 1E-68 3.5E-73 678.1 74.7 832 6-914 15-929 (1049)
7 3a6p_A Exportin-5; exportin-5, 100.0 2.1E-55 7.2E-60 557.2 56.1 709 6-758 10-860 (1204)
8 1wa5_C Importin alpha RE-expor 100.0 2.9E-32 9.8E-37 342.1 61.9 724 5-851 3-790 (960)
9 4fdd_A Transportin-1; heat rep 100.0 5.1E-32 1.8E-36 336.6 61.5 703 4-853 10-743 (852)
10 2bpt_A Importin beta-1 subunit 100.0 3.4E-29 1.2E-33 312.5 64.6 713 7-853 4-764 (861)
11 1qgr_A Protein (importin beta 100.0 5E-25 1.7E-29 275.4 62.6 712 9-854 3-776 (876)
12 1ibr_B P95, importin beta-1 su 99.9 2.4E-21 8.4E-26 223.0 31.8 432 9-539 3-461 (462)
13 4fdd_A Transportin-1; heat rep 99.6 8.3E-11 2.8E-15 145.7 58.3 538 209-854 103-701 (852)
14 1u6g_C TIP120 protein, CAND1; 99.6 7.5E-12 2.6E-16 161.5 44.9 672 6-853 5-722 (1230)
15 2bpt_A Importin beta-1 subunit 99.4 4.7E-07 1.6E-11 112.2 65.1 544 209-855 108-714 (861)
16 1qgr_A Protein (importin beta 99.4 5.7E-07 2E-11 111.7 63.8 544 214-854 107-724 (876)
17 1w9c_A CRM1 protein, exportin 99.1 1E-08 3.4E-13 106.5 22.4 129 722-855 68-199 (321)
18 1b3u_A Protein (protein phosph 98.8 7.7E-06 2.6E-10 96.3 36.8 473 9-598 88-585 (588)
19 1u6g_C TIP120 protein, CAND1; 98.8 2.2E-05 7.5E-10 101.1 43.5 546 208-851 18-636 (1230)
20 1b3u_A Protein (protein phosph 98.8 3.9E-05 1.3E-09 90.2 40.7 503 6-604 9-552 (588)
21 1ibr_B P95, importin beta-1 su 97.8 0.039 1.3E-06 62.0 34.2 110 451-571 339-452 (462)
22 2x1g_F Cadmus; transport prote 97.6 0.28 9.5E-06 61.0 41.7 282 524-853 454-761 (971)
23 2vgl_B AP-2 complex subunit be 97.5 0.031 1.1E-06 65.2 28.9 461 16-598 57-530 (591)
24 2qk1_A Protein STU2; STU2P, XM 97.4 0.0037 1.3E-07 64.1 17.2 145 451-604 27-179 (249)
25 2qk2_A LP04448P; mini spindles 97.0 0.017 5.9E-07 58.8 16.3 154 451-621 26-183 (242)
26 1w63_A Adapter-related protein 97.0 0.97 3.3E-05 52.8 35.7 466 19-598 81-575 (618)
27 2x19_B Importin-13; nuclear tr 96.8 1.8 6.1E-05 53.6 38.8 290 511-852 429-752 (963)
28 2jdq_A Importin alpha-1 subuni 96.6 0.08 2.7E-06 59.2 20.3 334 209-600 33-390 (450)
29 2vgl_B AP-2 complex subunit be 96.2 0.87 3E-05 52.9 26.4 414 17-553 95-529 (591)
30 1wa5_B Importin alpha subunit; 96.1 0.2 6.8E-06 57.5 20.1 333 209-601 100-458 (530)
31 2z6g_A B-catenin; FULL-length, 95.9 4.1 0.00014 48.9 30.8 287 8-351 116-420 (780)
32 1wa5_C Importin alpha RE-expor 95.9 5.2 0.00018 49.4 55.6 311 455-813 376-716 (960)
33 4b8j_A Importin subunit alpha- 95.8 1.1 3.9E-05 51.0 24.3 292 209-558 87-402 (528)
34 4hat_C Exportin-1; heat repeat 95.3 1.9 6.4E-05 53.3 25.0 309 505-856 470-837 (1023)
35 1wa5_B Importin alpha subunit; 95.3 0.28 9.7E-06 56.2 16.9 293 209-560 144-461 (530)
36 2jdq_A Importin alpha-1 subuni 94.6 6.6 0.00023 43.2 25.5 295 13-359 70-390 (450)
37 3gjx_A Exportin-1; transport, 94.6 3.9 0.00013 50.5 24.8 62 797-858 801-865 (1073)
38 3tpo_A Importin subunit alpha- 94.5 3.5 0.00012 47.0 23.0 299 209-559 89-409 (529)
39 3ul1_B Importin subunit alpha- 94.3 4.8 0.00016 45.6 23.7 338 209-601 70-431 (510)
40 3m1i_C Exportin-1; heat repeat 94.3 9.4 0.00032 47.6 28.3 309 509-855 473-836 (1049)
41 2qk2_A LP04448P; mini spindles 93.7 1.1 3.6E-05 45.2 14.9 152 682-854 55-207 (242)
42 1oyz_A Hypothetical protein YI 93.6 7.1 0.00024 39.8 21.9 218 9-267 25-249 (280)
43 4b8j_A Importin subunit alpha- 93.4 13 0.00044 42.1 25.1 290 18-359 127-443 (528)
44 3ibv_A Exportin-T; karyopherin 93.3 2.6 8.9E-05 51.9 20.0 63 789-856 506-570 (980)
45 1w63_A Adapter-related protein 91.8 23 0.00077 41.0 26.7 53 504-562 123-177 (618)
46 2qk1_A Protein STU2; STU2P, XM 91.0 4.8 0.00016 40.5 15.5 154 683-855 60-223 (249)
47 4hxt_A De novo protein OR329; 90.9 13 0.00045 36.7 20.2 220 9-270 4-243 (252)
48 2vgl_A Adaptor protein complex 90.6 29 0.001 40.1 24.3 109 504-629 127-239 (621)
49 1w9c_A CRM1 protein, exportin 88.9 5.5 0.00019 41.3 13.8 168 211-394 44-224 (321)
50 4db8_A Armadillo-repeat protei 88.2 7.1 0.00024 38.9 14.5 191 39-270 11-211 (252)
51 3ul1_B Importin subunit alpha- 85.9 49 0.0017 37.0 24.7 293 9-351 59-379 (510)
52 4hxt_A De novo protein OR329; 85.0 31 0.0011 33.9 18.5 186 44-270 6-201 (252)
53 4db6_A Armadillo repeat protei 84.9 5.8 0.0002 38.3 11.2 189 38-267 10-208 (210)
54 3tpo_A Importin subunit alpha- 80.7 79 0.0027 35.5 23.4 295 8-352 77-399 (529)
55 2of3_A ZYG-9; multifunctional 79.9 53 0.0018 33.0 16.1 170 60-272 60-240 (266)
56 2iw3_A Elongation factor 3A; a 78.4 80 0.0027 38.3 19.6 233 458-745 70-311 (986)
57 4db6_A Armadillo repeat protei 78.1 2.8 9.5E-05 40.7 6.0 140 451-602 23-169 (210)
58 4db8_A Armadillo-repeat protei 78.0 32 0.0011 34.0 14.2 214 11-266 16-249 (252)
59 2iw3_A Elongation factor 3A; a 76.7 44 0.0015 40.5 16.7 208 455-715 110-324 (986)
60 2db0_A 253AA long hypothetical 73.9 14 0.00049 34.6 8.7 118 460-600 127-246 (253)
61 1xqr_A HSPBP1 protein; armadil 72.3 14 0.00046 38.3 9.6 136 452-602 94-240 (296)
62 3ltm_A Alpha-REP4; protein eng 71.9 69 0.0024 30.4 18.3 179 9-225 21-203 (211)
63 2of3_A ZYG-9; multifunctional 71.6 83 0.0029 31.6 14.8 97 343-470 100-197 (266)
64 1xqr_A HSPBP1 protein; armadil 71.5 95 0.0032 31.8 17.0 183 4-226 25-239 (296)
65 3u0r_A Apoptosis inhibitor 5; 71.5 1.2E+02 0.0042 33.1 18.9 132 681-815 213-366 (507)
66 1jdh_A Beta-catenin; beta-cate 70.8 1.3E+02 0.0045 33.2 29.9 257 41-352 18-288 (529)
67 1oyz_A Hypothetical protein YI 67.5 1E+02 0.0036 30.7 16.3 145 416-598 39-186 (280)
68 3a6p_A Exportin-5; exportin-5, 66.5 51 0.0018 41.5 14.9 64 790-853 314-381 (1204)
69 2vgl_A Adaptor protein complex 63.5 2.1E+02 0.0071 32.8 36.7 128 18-157 84-215 (621)
70 2z6h_A Catenin beta-1, beta-ca 57.7 2.6E+02 0.0089 32.0 33.9 260 39-353 13-286 (644)
71 2z6g_A B-catenin; FULL-length, 48.8 3.9E+02 0.013 31.4 27.3 248 17-313 159-428 (780)
72 3ltm_A Alpha-REP4; protein eng 43.5 1.4E+02 0.0047 28.2 10.8 115 15-157 57-171 (211)
73 3ltj_A Alpharep-4; protein eng 43.2 2.1E+02 0.0071 26.6 18.5 176 8-221 15-194 (201)
74 2z6h_A Catenin beta-1, beta-ca 41.6 4.4E+02 0.015 30.0 20.4 217 9-269 58-293 (644)
75 3ltj_A Alpharep-4; protein eng 41.5 2E+02 0.0067 26.8 11.4 111 18-156 55-165 (201)
76 1te4_A Conserved protein MTH18 39.4 46 0.0016 29.0 5.9 75 452-553 54-130 (131)
77 2npp_B PP2A, B subunit, serine 31.8 5.2E+02 0.018 27.9 15.8 48 798-848 304-351 (449)
78 3fga_B Serine/threonine-protei 30.0 5.3E+02 0.018 27.4 17.2 48 798-848 271-318 (403)
79 4ffb_C Protein STU2; tubulin f 29.0 3.1E+02 0.01 27.3 11.0 66 789-855 150-215 (278)
80 3b2a_A TON_1937, putative unch 28.1 4.4E+02 0.015 25.9 13.4 194 31-270 24-220 (265)
81 1jdh_A Beta-catenin; beta-cate 26.6 6.4E+02 0.022 27.3 25.6 252 13-313 22-295 (529)
82 4ffb_C Protein STU2; tubulin f 22.5 5E+02 0.017 25.6 11.2 169 209-395 68-245 (278)
83 1te4_A Conserved protein MTH18 22.3 1.7E+02 0.0058 25.1 6.6 53 13-72 47-99 (131)
84 4atg_A TAF6; transcription, TF 22.3 5E+02 0.017 24.5 12.7 92 526-628 84-181 (196)
No 1
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=100.00 E-value=1.2e-83 Score=793.70 Aligned_cols=834 Identities=14% Similarity=0.150 Sum_probs=651.1
Q ss_pred HHHHHHHHHHhccCCChHHHHHHHHHHHHhhcChHHHHHHHHhhccCCCCCCccchhHHhhhHHhHHHhccCcCCCChHH
Q 002370 6 QIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAA 85 (930)
Q Consensus 6 ~~~v~~av~~ly~~~d~~~~~~A~~~L~~fq~s~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~ki~~~~~~l~~e~ 85 (930)
.+.+++||+++|++++ +.|++|++||++||++|++|.+|..+|+.+ .+.++|||||++|++||+++|+.+|+++
T Consensus 15 v~~Le~av~~ly~p~~-~~r~~A~~~L~~~q~sp~aw~~~~~iL~~s-----~~~~vR~faa~~Lk~~I~~~W~~L~~e~ 88 (1023)
T 4hat_C 15 IALLDQVVSTFYQGSG-VQQKQAQEILTKFQDNPDAWQKADQILQFS-----TNPQSKFIALSILDKLITRKWKLLPNDH 88 (1023)
T ss_dssp HHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHCTTGGGGHHHHHHHC-----CCHHHHHHHHHHHHHHHHHHGGGSCHHH
T ss_pred HHHHHHHHHHHhCCCh-HHHHHHHHHHHHHHcCccHHHHHHHHhcCC-----CCHHHHHHHHHHHHHHHHhhhhcCCHHH
Confidence 3589999999997655 489999999999999999999999999764 3579999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCC------CHHHHHHHHHHHHHHHHHhc--ccCchHHHHHHHhhcccCCCchhHHHHHHHhhhh
Q 002370 86 KDALLNALLVAAKRFSSG------PPQLLTQICLALSALILRAV--EHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLP 157 (930)
Q Consensus 86 ~~~lr~~Ll~~l~~~~~~------~~~v~~kL~~~La~l~~~~~--~W~~~i~~li~~~~~~~~~~~~~~~~L~iL~~l~ 157 (930)
+..||+.|++++.++..+ ++++++|+|.+++.++++.+ .||++++++++.+++ ++..+..+|.+|+.|+
T Consensus 89 ~~~Ir~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p~~Wp~~l~dL~~~l~~---~~~~~~~~L~iL~~L~ 165 (1023)
T 4hat_C 89 RIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSSS---SVNVCENNMIVLKLLS 165 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHTTT---CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhChhhchHHHHHHHHHhcC---CHHHHHHHHHHHHHHH
Confidence 999999999999876533 47899999999999999984 699999999999976 3456889999999999
Q ss_pred cccccccccccCCCHHHHHHHHHHHHhhhhHHHHHHHHHHhhccCCCCCcchhhhHHHHHHHHHHHHHhccccccCcchh
Q 002370 158 EEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSL 237 (930)
Q Consensus 158 EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~c~~sWi~~~~~~~~~~~~i 237 (930)
||+.+.... .++..||..+++.|...++.|++++.++++... +.++...+|+|+.+|+. |+|.+.+
T Consensus 166 EEV~~~~~~--~l~~~r~~~lk~~l~~~~~~I~~ll~~iL~~~~-------~~~l~~~~L~~l~s~l~-----WI~i~~i 231 (1023)
T 4hat_C 166 EEVFDFSAE--QMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGA-------SSSLIVATLESLLRYLH-----WIPYRYI 231 (1023)
T ss_dssp HHHHTSCTT--TSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS-------SCHHHHHHHHHHHHHTT-----TSCTHHH
T ss_pred HHHHHhhhc--cchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHHHHH-----hCCHHHh
Confidence 999764322 267889999999999999999999999998642 34678899999999999 8999998
Q ss_pred cccchHHHHH-HhcCCCCcHHHHHHHHHHHHhccC--C---hhHH---HHhh------------hhhhHHhhhchhhccC
Q 002370 238 AAHPLLNFVF-NSLQVQSSFDVAIEVLVELVGRHE--G---LPQA---LLCR------------VPFLKELLLLPALTDG 296 (930)
Q Consensus 238 ~~~~ll~~l~-~~L~~~~~~~~a~~~l~ei~~~~~--~---~~~~---l~~~------------~~~l~~~~~~~~~~~~ 296 (930)
.++++++.+| +.|.+++++++|++||++++++.. + +.+. +++. ...+.+.+. ...++
T Consensus 232 ~~~~ll~~l~~~~L~~~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~lf~~~l~~l~~~i~p~~~~l~~~~~--~~~~~ 309 (1023)
T 4hat_C 232 YETNILELLSTKFMTSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYA--NANGN 309 (1023)
T ss_dssp HSSSHHHHHHTHHHHSHHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHHHHHHHHHHHHTCCTTCCHHHHHH--HTCTT
T ss_pred cchhHHHHHHHHHcCCHHHHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHh--ccccc
Confidence 8999999999 999999999999999999998531 2 3321 2222 223444442 23456
Q ss_pred cHhHHhhHHHHHHHHHHhhhHHHHhcCh---hHHHHHHHHHhcccCCCCCchhhhhcHHHHHHHHHHhhccchhhhhhhh
Q 002370 297 DEKVIGGLACLMSEIGQAAPSLIVEASP---EALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAKNKK 373 (930)
Q Consensus 297 d~d~~~~l~~l~~~~~e~~~~~l~~~~~---~~~~ll~~ll~~~~~p~~d~~v~~~~~~fW~~l~~~l~~~~~~~~~~~~ 373 (930)
|.++.+++|++|+++|++|...+.+++. .....+++|+.|++++ |++++++|++||+.|++++++. +
T Consensus 310 D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l~~~l~~Ll~~~~~~--d~ei~~~tl~FW~~L~~~l~~e--------~ 379 (1023)
T 4hat_C 310 DQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIE--ERELFKTTLDYWHNLVADLFYE--------P 379 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHHHHHHHHHHHHTTSS--CHHHHHHHHHHHHHHHHHHTTS--------T
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHhhCCC--cHHHHHHHHHHHHHHHHHHHhc--------h
Confidence 7889999999999999999998875522 2234577999999997 8999999999999999987642 1
Q ss_pred hhhhhcHHHHHHHHHHHHHHhccCCCCC-----CCCC------CCCCCchHHHHHHHHHHHHHHHHHhcCchHHHHHHHH
Q 002370 374 HVEDMFFSVFSALLDALLLRAQVDESSF-----NDDG------MVDLPDGLVQFRMNLVELLVDICQLLRSATFIQKVFF 442 (930)
Q Consensus 374 ~~~~~~~~~~~~Ll~~l~~k~~~p~~~~-----~~~~------~~d~~d~f~~~R~~~~d~l~~~~~~l~~~~~l~~~~~ 442 (930)
.....|+|+|.+|+.++++||+||++.. .++| |.|+.+.|+.|| |+|.+++.+.|+ .++..+++
T Consensus 380 ~~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~R----d~L~~l~~l~~~-~~~~~~~~ 454 (1023)
T 4hat_C 380 LKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSER----EVLVYLTHLNVI-DTEEIMIS 454 (1023)
T ss_dssp TTGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHH----HHHHHHHHHCHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHH----HHHHHHhccCHH-HHHHHHHH
Confidence 3457899999999999999999998421 1133 445566777777 899999998876 46666665
Q ss_pred hhhcC-CCCCCCchhhhHHHHHHHhhhhccccCCCccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHH
Q 002370 443 GSWGS-ANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWIS 521 (930)
Q Consensus 443 ~~~~~-~~~~~~W~~~Ea~L~~l~~iae~~~~~~~~~~l~~i~~~l~~l~~~~~~~~~~~~~v~~~t~~~~ig~y~~wl~ 521 (930)
.+... ..++++|+.+||++||+|+|++++.++.....++.+++.+..++++...+. ..+.++. |+|+++|+|++|+.
T Consensus 455 ~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d-~k~~v~~-t~~~~lGry~~wl~ 532 (1023)
T 4hat_C 455 KLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKD-NKAVVAS-DIMYVVGQYPRFLK 532 (1023)
T ss_dssp HHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHH-HHHHHHH-HHHHHHHTCHHHHH
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCc-chHHHHH-HHHHHHHHHHHHHh
Confidence 54321 112478999999999999999998754221236777777777776422111 0112444 55799999999999
Q ss_pred hchhchHHHHHHHHHhccc--cchhHHHHHHHHHHHHHhhcccCC------CccHHHHHHHHHHHHhcCCChhhHHHHHH
Q 002370 522 AFQTNARPLLLFLAAGISE--AVSSNACASALRKICEDASALIDE------PSNLEILMWIGEALEKRHLPLEDEEEVVG 593 (930)
Q Consensus 522 ~~p~~L~~vl~~l~~~l~~--p~v~~~Aa~al~~lc~~c~~~l~~------p~~~~~l~~~~~~l~~~~l~~~~~~~l~e 593 (930)
.||++|+++++++++++++ |+++.+||.||++||++|+.++.. +++.+.+.+.+.... ..++.+++..+||
T Consensus 533 ~~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~-~~l~~~~~~~lye 611 (1023)
T 4hat_C 533 AHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTT-ADLQPQQVHTFYK 611 (1023)
T ss_dssp HCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHH-TTSCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHH-HhCCHHHHHHHHH
Confidence 9999999999999999964 679999999999999999988742 125555544444332 3678999999999
Q ss_pred HHHHHHccCCchHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCchhhH--HHHHHhHHHHHhhhcccccccccCCCCC
Q 002370 594 AISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYT--QILSSATRGLYRMGTVFSHLPVPLPTNP 671 (930)
Q Consensus 594 ai~~vi~~~p~~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~l~~l~~i~~~l~~~~~~~~ 671 (930)
|+|.+++++|.++.+..+++.++.|+.+.|+++.++.. .++..+. +..+.....+++++++.+.+.
T Consensus 612 ai~~vi~~~~~~~~~~~~l~~L~~~~~~~~~~l~~~~~-----~~~~~~~d~~~~~~l~~il~~~~~v~~~lg------- 679 (1023)
T 4hat_C 612 ACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQST-----ANPTLLLDSETVKIIANIIKTNVAVCTSMG------- 679 (1023)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHH-----HCTTGGGCHHHHHHHHHHHHHHHHHHHHHG-------
T ss_pred HHHHHHHhCCCHhhHHHHHHHHHHhHHHHHHHHHHHHh-----cCchhhcCHHHHHHHHHHHHHHHHHHHHhc-------
Confidence 99999999999887889999999999999999997531 1222221 112233344444444444432
Q ss_pred CCCchHHHHHHHHHHHHHHHHHhhhcc--------chHH-----HHHHHHHHHHHHHHhhh-----h------hHhhHHH
Q 002370 672 AGDDPIFALLRVFWPMLEKLFRSEHME--------NGNL-----STAACRALSLAIQSSGQ-----H------FVTLLPQ 727 (930)
Q Consensus 672 ~~~~p~~~~~~~i~~~l~~i~~~~~~~--------~~~v-----~e~~c~~~~~~i~~l~~-----~------~~p~l~~ 727 (930)
+++.+.++.+||.+..+++ .+.+ ++.+ ..+.|+++|+.+..+-. . ...++|+
T Consensus 680 ---~~f~~~~~~i~~~~l~~y~-~~s~~i~~~~~~~g~~~~~~~~~r~~r~ik~~il~l~~~~i~~~~~~~~~~~~~~~~ 755 (1023)
T 4hat_C 680 ---ADFYPQLGHIYYNMLQLYR-AVSSMISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYISKARNLDDVVKVLVEP 755 (1023)
T ss_dssp ---GGGHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHTHHH
T ss_pred ---HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhHHH
Confidence 5677888889998888776 3422 1111 23677888776544211 1 3458999
Q ss_pred HHHHHHHhhhhhC---CcchHHHHHHHHHHHhcCCCCccchHHHHHHHHhhhHHHHHhhcCCCCCCCCchHHHHHHHHHH
Q 002370 728 VLDCLSTNFVSFQ---NHECYIRTASVVIEEFGHKDEYGPLFVTTFERFSQAASVRALNSSYICDQEPDLVEAYTNFAST 804 (930)
Q Consensus 728 l~~~l~~~~~~~~---~~~~~L~l~~~li~~fg~~~~~~~~l~~l~~~l~~~~~~~~l~~~~~~~~~pD~~~~~f~l~~~ 804 (930)
+++.++..|..+. +++++|++++++|+++|+ .+.+.+..+++.+.++| +.+++ .++.++||++.+||+|+.+
T Consensus 756 l~~~vl~dY~~~~~~~r~~~vL~l~s~iv~~~~~--~~~~~~~~il~~vf~~T-l~mi~--~~~~~~Pe~r~~ff~ll~~ 830 (1023)
T 4hat_C 756 LLNAVLEDYMNNVPDARDAEVLNCMTTVVEKVGH--MIPQGVILILQSVFECT-LDMIN--KDFTEYPEHRVEFYKLLKV 830 (1023)
T ss_dssp HHHHHHHHHHHSCGGGCCHHHHHHHHHHHHHHGG--GCHHHHHHHHHHHHHHH-HHHHS--SCSSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCChhhccHHHHHHHHHHHHHHHH--hhhhhhHHHHHHHHHHH-HHHHh--cccccChHHHHHHHHHHHH
Confidence 9999999998753 358999999999999996 46778888999999998 88888 4899999999999999999
Q ss_pred HHhhhhHHHHhhchhchHHHHHHHHHhhccCchhHHHHHHHHHHHHHhhhhhhccCCCCCCCCccHHHHHHHHHHhhhHH
Q 002370 805 FVRTSRKEVLAASGALLEVSFQKAAICCTAMHRGAALAAMSYLSCFLEECLASLLGYTTSIPEGSFNAMAIQVISHSGEG 884 (930)
Q Consensus 805 ~l~~~p~~~~~s~~~~l~~~l~~~l~~l~~~e~~~~~a~~~fl~~li~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~ 884 (930)
++++||..|+..+++.+..+++++++|++++||++..++++|+.+++...... ++ .+..+++..+++..
T Consensus 831 ~~~~~f~~~~~~~~~~~~~~~~~~~~a~~h~~r~~~~~~l~~~~~ll~~~~~~----~~-------~~~~~~f~~~~~~~ 899 (1023)
T 4hat_C 831 INEKSFAAFLELPPAAFKLFVDAICWAFKHNNRDVEVNGLQIALDLVKNIERM----GN-------VPFANEFHKNYFFI 899 (1023)
T ss_dssp HHHHCTHHHHTSCHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHH----CS-------SHHHHHHHHHHHHH
T ss_pred HHHHChHHHHcCCHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHhc----CC-------hHHHHHHHHHHHHH
Confidence 99999999999876789999999999999999999999999999999876642 11 14566777888888
Q ss_pred HHHHHHHHhcccccccchhhhhHHHHHHHh
Q 002370 885 LVSNVVYALLGVSAMSRIHSGGSCFQKKRS 914 (930)
Q Consensus 885 lv~~ll~~~~g~~prs~~~~~~~~L~~l~~ 914 (930)
++..++.-+....=.+....-+.+|+.+..
T Consensus 900 ~~~~~~~v~td~~h~~~f~~~~~~l~~l~~ 929 (1023)
T 4hat_C 900 FVSETFFVLTDSDHKSGFSKQALLLMKLIS 929 (1023)
T ss_dssp HHHHHHHHHHSSSCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCchhhhhHHHHHHHHHHHHH
Confidence 877777776655555555555555555444
No 2
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=100.00 E-value=8.3e-83 Score=779.32 Aligned_cols=842 Identities=13% Similarity=0.171 Sum_probs=651.1
Q ss_pred HHHHHHHHHHhccCCChHHHHHHHHHHHHhhcChHHHHHHHHhhccCCCCCCccchhHHhhhHHhHHHhccCcCCCChHH
Q 002370 6 QIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAA 85 (930)
Q Consensus 6 ~~~v~~av~~ly~~~d~~~~~~A~~~L~~fq~s~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~ki~~~~~~l~~e~ 85 (930)
.+.++++|.++|+ |+++.|++|++||++||++|++|+.|..+|... .+.++|||||++|+++|+++|+.+|+++
T Consensus 27 v~~Le~lv~~ly~-p~~~~r~qA~~~L~q~q~sp~aw~~~~~iL~~s-----~~~~vR~fAa~~L~~~I~~~W~~L~~e~ 100 (1073)
T 3gjx_A 27 INLLDNVVNCLYH-GEGAQQRMAQEVLTHLKEHPDAWTRVDTILEFS-----QNMNTKYYGLQILENVIKTRWKILPRNQ 100 (1073)
T ss_dssp HHHHHHHHHTTTC-SSHHHHHHHHHHHHTSSCCSCHHHHHTCC---C-----CSHHHHHHHHHHHHHHHHHTGGGSCHHH
T ss_pred HHHHHHHHHHHhC-CCHHHHHHHHHHHHHHHcCchHHHHHHHHhcCC-----CCHHHHHHHHHHHHHHHHhhhhhCCHHH
Confidence 3589999999996 478899999999999999999999999999763 3579999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCC------CHHHHHHHHHHHHHHHHHhc--ccCchHHHHHHHhhcccCCCchhHHHHHHHhhhh
Q 002370 86 KDALLNALLVAAKRFSSG------PPQLLTQICLALSALILRAV--EHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLP 157 (930)
Q Consensus 86 ~~~lr~~Ll~~l~~~~~~------~~~v~~kL~~~La~l~~~~~--~W~~~i~~li~~~~~~~~~~~~~~~~L~iL~~l~ 157 (930)
+..||+.|++++.++..+ ++.+++|+|.+++.++++.+ .||++++++++.+++ ++..+.+.|.+|+.|+
T Consensus 101 ~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~Wp~fi~dLv~~~~~---~~~~~~~~L~IL~~L~ 177 (1073)
T 3gjx_A 101 CEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKHWPTFISDIVGASRT---SESLCQNNMVILKLLS 177 (1073)
T ss_dssp HHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHH---CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhhccHHHHHHHHHhCC---CHHHHHHHHHHHHHHH
Confidence 999999999999876543 37888999999999999975 699999999999875 4557889999999999
Q ss_pred cccccccccccCCCHHHHHHHHHHHHhhhhHHHHHHHHHHhhccCCCCCcchhhhHHHHHHHHHHHHHhccccccCcchh
Q 002370 158 EEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSL 237 (930)
Q Consensus 158 EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~c~~sWi~~~~~~~~~~~~i 237 (930)
||+.+.++.+ ++..||.++++.+...++.|++++..+++... +.++...+|+|+.+|+. |++.+.+
T Consensus 178 EEV~d~~~~~--l~~~r~~~lk~~L~~~~~~Il~ll~~iL~~~~-------~~~lv~~~L~~L~~~~s-----WI~i~~i 243 (1073)
T 3gjx_A 178 EEVFDFSSGQ--ITQVKAKHLKDSMCNEFSQIFQLCQFVMENSQ-------NAPLVHATLETLLRFLN-----WIPLGYI 243 (1073)
T ss_dssp HHHTTSHHHH--BCHHHHHHHHHHHHHTCHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHTT-----TSCTHHH
T ss_pred HHHHhccccc--ccHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-------CHHHHHHHHHHHHHHHH-----hcCHHHh
Confidence 9998654333 67788999999999999999999999987642 34677888888888888 7888888
Q ss_pred cccchHHHH-HHhcCCCCcHHHHHHHHHHHHhccC-Chh---HHHHhhhhh-----------hHHhhhchhhccCcHhHH
Q 002370 238 AAHPLLNFV-FNSLQVQSSFDVAIEVLVELVGRHE-GLP---QALLCRVPF-----------LKELLLLPALTDGDEKVI 301 (930)
Q Consensus 238 ~~~~ll~~l-~~~L~~~~~~~~a~~~l~ei~~~~~-~~~---~~l~~~~~~-----------l~~~~~~~~~~~~d~d~~ 301 (930)
.++++++.+ +..|.+++++++|++||++++++.- ++. ..++..++. +.+.|. ...++|.+++
T Consensus 244 ~~~~ll~~L~~~~L~~~~~r~aA~dcL~eIv~k~~~~~~~~~~~lf~~~~~~i~~ilp~~~~l~~~y~--~~~~~d~e~~ 321 (1073)
T 3gjx_A 244 FETKLISTLIYKFLNVPMFRNVSLKCLTEIAGVSVSQYEEQFETLFTLTMMQLKQMLPLNTNIRLAYS--NGKDDEQNFI 321 (1073)
T ss_dssp HSSSHHHHHHHHTSSSHHHHHHHHHHHHHHHHSCSGGGHHHHHHHHHHHHHHHHHHSCTTSCHHHHHH--TCCTTHHHHH
T ss_pred ccchHHHHHHHHhcCChHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHhcCCchhHHHHHh--ccchhhHHHH
Confidence 899999988 7999999999999999999999742 222 223333322 222221 1245677899
Q ss_pred hhHHHHHHHHHHhhhHHHHhcCh---hHHHHHHHHHhcccCCCCCchhhhhcHHHHHHHHHHhhccchhh----------
Q 002370 302 GGLACLMSEIGQAAPSLIVEASP---EALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASI---------- 368 (930)
Q Consensus 302 ~~l~~l~~~~~e~~~~~l~~~~~---~~~~ll~~ll~~~~~p~~d~~v~~~~~~fW~~l~~~l~~~~~~~---------- 368 (930)
+++|++|+++|++|...+.+++. .....+++++.|+++| |+++.++||+||+.|.++++...+..
T Consensus 322 ~~l~~~f~~~~e~~~~lIe~~p~~~~~l~~~l~~ll~~s~~~--d~ei~kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~ 399 (1073)
T 3gjx_A 322 QNLSLFLCTFLKEHGQLLEKRLNLREALMEALHYMLLVSEVE--ETEIFKICLEYWNHLAAELYRESPFSTSASPLLSGS 399 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCS--CHHHHHHHHHHHHHHHHHHHHHCCSCCCCSSCTTSS
T ss_pred HHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHHHHHHHhhcccccccccccccc
Confidence 99999999999999999987643 3457789999999998 89999999999999999987322100
Q ss_pred -hhhhhhhhhhcHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCchHHHHHHH---------HHHHHHHHHHhcCchHHHH
Q 002370 369 -AKNKKHVEDMFFSVFSALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMN---------LVELLVDICQLLRSATFIQ 438 (930)
Q Consensus 369 -~~~~~~~~~~~~~~~~~Ll~~l~~k~~~p~~~~~~~~~~d~~d~f~~~R~~---------~~d~l~~~~~~l~~~~~l~ 438 (930)
..+.+.+...|+|+|.+|+.+++.||.||+|.+.. +.|+.|-|++||++ ++|++.+++.+ +++.++.
T Consensus 400 ~~~~~~~~~~~y~~i~~~L~~vlI~~m~~P~ev~i~--e~e~ge~~re~~~d~~~~~ly~~mrd~L~~lt~l-~~~~~~~ 476 (1073)
T 3gjx_A 400 QHFDIPPRRQLYLTVLSKVRLLMVSRMAKPEEVLVV--ENDQGEVVREFMKDTDSINLYKNMRETLVYLTHL-DYVDTEI 476 (1073)
T ss_dssp CCSCSCHHHHTTHHHHHHHHHHHHHTCCCSCCEEEE--ECSSSCEEEEECSSCHHHHHHHHHHHHHHHHHHH-CHHHHHH
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHhcCCCcccccc--CcccchHHHHHHhhcchHHHHHHHHHHHHHHhcC-CHHHHHH
Confidence 00112356679999999999999999999984431 22445555565554 44555554433 4455666
Q ss_pred HHHHhhhcC-CCCCCCchhhhHHHHHHHhhhhccccC-CCccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhh
Q 002370 439 KVFFGSWGS-ANVPIPWKEVETKLFALNVVSEVVLQE-GQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSY 516 (930)
Q Consensus 439 ~~~~~~~~~-~~~~~~W~~~Ea~L~~l~~iae~~~~~-~~~~~l~~i~~~l~~l~~~~~~~~~~~~~v~~~t~~~~ig~y 516 (930)
.+++.+... ....++|+.+||++|++|+||+.+.++ ++ ..++.+++.|..+|++++.+ ..++++.+++|+++|+|
T Consensus 477 i~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~-~~Lp~vi~~Ll~L~e~~~~k--d~k~~vas~i~~vlgrY 553 (1073)
T 3gjx_A 477 IMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEK-RFLVTVIKDLLGLCEQKRGK--DNKAIIASNIMYIVGQY 553 (1073)
T ss_dssp HHHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHH-HHHHHHHHHHHHHHHHSCSH--HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCccccc-chHHHHHHHHhccccccccc--chhHHHHHHHHHHHhhh
Confidence 666654321 123578999999999999999887642 33 23788889888999887533 22445666778999999
Q ss_pred HHHHHhchhchHHHHHHHHHhccc--cchhHHHHHHHHHHHHHhhcccCCC------ccHHHHHHHHHHHHhcCCChhhH
Q 002370 517 SKWISAFQTNARPLLLFLAAGISE--AVSSNACASALRKICEDASALIDEP------SNLEILMWIGEALEKRHLPLEDE 588 (930)
Q Consensus 517 ~~wl~~~p~~L~~vl~~l~~~l~~--p~v~~~Aa~al~~lc~~c~~~l~~p------~~~~~l~~~~~~l~~~~l~~~~~ 588 (930)
++|+..||+||+++++++++++++ |+|+.+||.||.+||++|+++++.. ++++.+.+.+.. ...+++.++.
T Consensus 554 ~~wl~~h~~~L~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~-~~~~l~~~~~ 632 (1073)
T 3gjx_A 554 PRFLRAHWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINT-IICDLQPQQV 632 (1073)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHH-HHTTCCHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHH-HHHhcCHHHH
Confidence 999999999999999999999984 6799999999999999999988542 133333333332 2357899999
Q ss_pred HHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHHHHhhhhccCC-CCCCCCchhhHHHHHHhHHHHHhhhcccccccccC
Q 002370 589 EEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNN-HSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPL 667 (930)
Q Consensus 589 ~~l~eai~~vi~~~p~~~~~~~~l~~ll~p~~~~l~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~l~~l~~i~~~l~~~~ 667 (930)
..+|+|+|.+++++|.+..+..+++.++.|..++|++++++... .+.-.++. .++++..+++... ..
T Consensus 633 ~~lyeav~~vi~~~p~~~~~~~~i~~Lm~~~~~~w~~l~~~~~~~~~~~~d~~-----------~i~~l~~il~~n~-~v 700 (1073)
T 3gjx_A 633 HTFYEAVGYMIGAQTDQTVQEHLIEKYMLLPNQVWDSIIQQATKNVDILKDPE-----------TVKQLGSILKTNV-RA 700 (1073)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGCHH-----------HHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCchhccChH-----------HHHHHHHHHhhhH-HH
Confidence 99999999999999998777999999999999999999975421 11111111 2344555555332 11
Q ss_pred CCCCCCCchHHHHHHHHHHHHHHHHHhhhcc--------chH-----HHHHHHHHHHHHHHHh-----hhh------hHh
Q 002370 668 PTNPAGDDPIFALLRVFWPMLEKLFRSEHME--------NGN-----LSTAACRALSLAIQSS-----GQH------FVT 723 (930)
Q Consensus 668 ~~~~~~~~p~~~~~~~i~~~l~~i~~~~~~~--------~~~-----v~e~~c~~~~~~i~~l-----~~~------~~p 723 (930)
+. +..+++.+.+..+||.+..+++ .+.+ ++. ...+.||++|+.+..+ +.. ...
T Consensus 701 ~~--~~g~~f~~~~~~i~~~~l~~y~-~~s~~i~~~v~~~g~~~~~~~~~~~~r~ik~eil~l~~~~i~~~~~~~~v~~~ 777 (1073)
T 3gjx_A 701 CK--AVGHPFVIQLGRIYLDMLNVYK-CLSENISAAIQANGEMVTKQPLIRSMRTVKRETLKLISGWVSRSNDPQMVAEN 777 (1073)
T ss_dssp HH--HHCGGGHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCGGGGSSHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHH
T ss_pred Hh--hcchhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 11 1236788999999998877765 2322 122 3458899999766433 221 356
Q ss_pred hHHHHHHHHHHhhhhhC---CcchHHHHHHHHHHHhcCCCCccchHHHHHHHHhhhHHHHHhhcCCCCCCCCchHHHHHH
Q 002370 724 LLPQVLDCLSTNFVSFQ---NHECYIRTASVVIEEFGHKDEYGPLFVTTFERFSQAASVRALNSSYICDQEPDLVEAYTN 800 (930)
Q Consensus 724 ~l~~l~~~l~~~~~~~~---~~~~~L~l~~~li~~fg~~~~~~~~l~~l~~~l~~~~~~~~l~~~~~~~~~pD~~~~~f~ 800 (930)
++|++++.++.+|..+. +++++|++.+++|.++|.. +.+.+..+++.+.++| +.++. .++.++||.+.+||+
T Consensus 778 ~i~pl~~~vl~dY~~~~p~~r~~evL~l~s~iv~k~~~~--~~~~~~~il~~vf~~T-l~mi~--~~f~~~Pe~r~~ff~ 852 (1073)
T 3gjx_A 778 FVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGH--ITAEIPQIFDAVFECT-LNMIN--KDFEEYPEHRTNFFL 852 (1073)
T ss_dssp TSHHHHHHTHHHHHHSCGGGCCTHHHHHHHHHHHHHGGG--TGGGHHHHHHHHHHHH-HHHHS--SCSSSCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHHHhh--cchhHHHHHHHHHHHH-HHHHh--CCcccCcHHHHHHHH
Confidence 88999999999998742 5899999999999999984 5677888888888998 88887 489999999999999
Q ss_pred HHHHHHhhhhHHHHhhchhchHHHHHHHHHhhccCchhHHHHHHHHHHHHHhhhhhhccCCCCCCCCccHHHHHHHHHHh
Q 002370 801 FASTFVRTSRKEVLAASGALLEVSFQKAAICCTAMHRGAALAAMSYLSCFLEECLASLLGYTTSIPEGSFNAMAIQVISH 880 (930)
Q Consensus 801 l~~~~l~~~p~~~~~s~~~~l~~~l~~~l~~l~~~e~~~~~a~~~fl~~li~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 880 (930)
|+.++..+|+..|+..+++.+..+++++++|+++++|++..++++++.+++..... . .+..+++..+
T Consensus 853 ll~~~~~~~f~~l~~l~~~~~~~~i~~i~wa~kh~~r~i~~~~l~~~~~ll~~~~~------~-------~~~~~~F~~~ 919 (1073)
T 3gjx_A 853 LLQAVNSHCFPAFLAIPPAQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVAQ------E-------EAAAQSFYQT 919 (1073)
T ss_dssp HHHHHHHHCGGGTTTSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHTT------C-------HHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHcCCHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHHhhc------C-------hHHHHHHHHH
Confidence 99999999999999987778899999999999999999999999999999987542 1 1346677788
Q ss_pred hhHHHHHHHHHHhcccccccchhhhhHHHHHHHh
Q 002370 881 SGEGLVSNVVYALLGVSAMSRIHSGGSCFQKKRS 914 (930)
Q Consensus 881 ~G~~lv~~ll~~~~g~~prs~~~~~~~~L~~l~~ 914 (930)
++..++..++..+....=.+....-+.+|..+..
T Consensus 920 ~~~~~~~~i~~v~td~~h~~~f~~q~~il~~l~~ 953 (1073)
T 3gjx_A 920 YFCDILQHIFSVVTDTSHTAGLTMHASILAYMFN 953 (1073)
T ss_dssp HHHHHHHHHHHHHTCTTCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCchHhhhhhHHHHHHHHHHH
Confidence 8888877777766655555555555555554433
No 3
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=100.00 E-value=1.3e-83 Score=811.96 Aligned_cols=851 Identities=16% Similarity=0.259 Sum_probs=659.3
Q ss_pred HHHHHHHHHHhccCCChHHHHHHHHHHHHhhcChHHHHHHHHhhccCCCCCCccchhHHhhhHHhHHHhccCcCCCChHH
Q 002370 6 QIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAA 85 (930)
Q Consensus 6 ~~~v~~av~~ly~~~d~~~~~~A~~~L~~fq~s~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~ki~~~~~~l~~e~ 85 (930)
.++|+++++++| ++|++.|++|++||++||++|++|.+|..||... .+.++|||||++|++||+++|..+|+++
T Consensus 6 ~~~l~~~l~~~~-~~d~~~r~~A~~~L~~~~~~p~~w~~~~~lL~~~-----~~~~vr~~aa~~L~~~i~~~w~~l~~~~ 79 (971)
T 2x1g_F 6 IARLEEAVVSFY-RSNSQNQAITHEWLTDAEASPQAWQFSWQLMQLG-----KSQEVQFFGAITLHSKLMKHWHEVPPEN 79 (971)
T ss_dssp -----CTHHHHH-TSTTTC----CHHHHHTTTSTHHHHHHHHHTCTT-----SCHHHHHHHHHHHHHHHHHCGGGCCGGG
T ss_pred HHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHcCHHHHHHHHHHHhcC-----CcHHHHHHHHHHHHHHHHccHhhCCHHH
Confidence 558999999987 5788899999999999999999999999999763 3579999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhc-ccCchHHHHHHHhhcccC----CCchhHHHHHHHhhhhccc
Q 002370 86 KDALLNALLVAAKRFSSGPPQLLTQICLALSALILRAV-EHGKPIEKLFYSLQNLQS----QDNGNMAVLEMLTVLPEEV 160 (930)
Q Consensus 86 ~~~lr~~Ll~~l~~~~~~~~~v~~kL~~~La~l~~~~~-~W~~~i~~li~~~~~~~~----~~~~~~~~L~iL~~l~EE~ 160 (930)
+..||+.|++++.+...+++.|++|+|.+++.++.+.. .||+++++++..++++.. ++...+..+++|+.+|||+
T Consensus 80 ~~~ir~~ll~~l~~~~~~~~~vr~kl~~~la~i~~~~~p~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~EEi 159 (971)
T 2x1g_F 80 REELKQKILESIVRFAGGPKIVLNRLCISLGAYIVHMLGEWPGAIEEVINTFQNQRMPNVSADVQLWIMLEVLTAIPEEA 159 (971)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTCC------HHHHHHHHTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHhHHHH
Confidence 99999999999998766789999999999999999987 899999999999875210 1236789999999999998
Q ss_pred ccccccccCCCHHHHHHHHHHHHhhhhHHHHHHHHHHhhccCCCCCcchhhhHHHHHHHHHHHHHhccccccCcchhccc
Q 002370 161 IDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAH 240 (930)
Q Consensus 161 ~~~~~~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~c~~sWi~~~~~~~~~~~~i~~~ 240 (930)
...+ +..+|..+++.+....+.|++++.++++...+++......++...+++|+.+|+.++ |+|.+ ..+
T Consensus 160 ~~~~------~~~~r~~~~~~l~~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~---~ip~~--~~~ 228 (971)
T 2x1g_F 160 QVIH------TSVKRVVLRAEIAKRVQLVIHTVERYLKLQMNRVWDAEAYSNMNRAVKCVGTWIKNI---GYTIE--GCV 228 (971)
T ss_dssp HHCC------CSSCHHHHHHHHHTTHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHS---CCCGG--GHH
T ss_pred hccC------cHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccchhHHHHHHHHHHHHHhhC---CcCcc--ccc
Confidence 6321 345777888889999999999999988765321100011268899999999999985 67776 567
Q ss_pred chHHHHHHhc------------------CCCCcHHHHHHHHHHHHhccC-----ChhHHHHhhhhhhHHhhhchhhccCc
Q 002370 241 PLLNFVFNSL------------------QVQSSFDVAIEVLVELVGRHE-----GLPQALLCRVPFLKELLLLPALTDGD 297 (930)
Q Consensus 241 ~ll~~l~~~L------------------~~~~~~~~a~~~l~ei~~~~~-----~~~~~l~~~~~~l~~~~~~~~~~~~d 297 (930)
++++.+|+ | .++++++.|++|+.++++..+ +.+..++|.++++.+.+. .+..++|
T Consensus 229 ~ll~~l~~-L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~d 306 (971)
T 2x1g_F 229 TITAVLLE-VVHKCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCHNYPKTAFVLIKMFLDSLSEIT-KTEWKRE 306 (971)
T ss_dssp HHHHHHHH-HHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGGGCHHHHHHHHHHHHHHHHHHH-HHHSSSS
T ss_pred cHHHHHHh-hhhhhccccccccccccCcCCcHHHHHHHHHHHHHHcCccccccHHHHHHHHHHHHHhHHHHH-HHHhccc
Confidence 89999998 6 567889999999999998643 245567788777655443 2445556
Q ss_pred H---hHHhhHHHHHHHHHHhhhHHHH----h----cChhHHHHHHHHHhcccCCC---CCchhhhhcHHHHHHHHHHhhc
Q 002370 298 E---KVIGGLACLMSEIGQAAPSLIV----E----ASPEALALADALLSCVAFPS---EDWEIADSTLQFWSTLASYILG 363 (930)
Q Consensus 298 ~---d~~~~l~~l~~~~~e~~~~~l~----~----~~~~~~~ll~~ll~~~~~p~---~d~~v~~~~~~fW~~l~~~l~~ 363 (930)
. +....+|++++.+++.+...+. + .++.+..+++.|+.++.+|| .+++++..+++||+.+.+++.+
T Consensus 307 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~ 386 (971)
T 2x1g_F 307 NDNEDIIVHIYMLFVSSVERHSTLLLSGITSADPELSILVHRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFA 386 (971)
T ss_dssp CSCSHHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHh
Confidence 4 8899999999999999998887 3 23456789999999998854 2677999999999999986543
Q ss_pred cchhhhhhhhhhhhhcHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHhcCchHHHHHHHHh
Q 002370 364 LDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSATFIQKVFFG 443 (930)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~Ll~~l~~k~~~p~~~~~~~~~~d~~d~f~~~R~~~~d~l~~~~~~l~~~~~l~~~~~~ 443 (930)
++.+. +.......++|+|.+++..++.|+.||+++..++|+.+|+++|.+||+.++|++.+++.++|. .++..++..
T Consensus 387 ~~~~~--~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~~-~~l~~~~~~ 463 (971)
T 2x1g_F 387 MSNDE--QKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRCYRQDISDTFMYCYDVLND-YILEILAAM 463 (971)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHHHHHHHHHHHHHHHTTCTT-HHHHHHHHH
T ss_pred ccccc--chHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHH
Confidence 32110 112345678999999999999999999874222566677789999999999999999999884 455554433
Q ss_pred hhc---C-CCCCCCchhhhHHHHHHHhhhhccccCCCccchhHHHHHHHHhcc-CchhhhhhHHHHHHHHHHHHHHhhHH
Q 002370 444 SWG---S-ANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSA-SRSEELKGFMHIVYRSLADVIGSYSK 518 (930)
Q Consensus 444 ~~~---~-~~~~~~W~~~Ea~L~~l~~iae~~~~~~~~~~l~~i~~~l~~l~~-~~~~~~~~~~~v~~~t~~~~ig~y~~ 518 (930)
+.. . ...+.+|+.+||++|+++++++++.++.. ..++.+++++..++. .+++ .||.++ ++++|+|++
T Consensus 464 l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~-~~l~~l~~~l~~l~~~d~~~------~vr~~a-~~~l~~~~~ 535 (971)
T 2x1g_F 464 LDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEK-RQIPRLMRVLAEIPYEKLNV------KLLGTA-LETMGSYCN 535 (971)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC-------CHHHHHHHHHHHSCTTTSCH------HHHHHH-HHHHHHTHH
T ss_pred HHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhh-HHHHHHHHHHHhcCccccCH------HHHHHH-HHHHHHHHH
Confidence 211 0 01236899999999999999999986543 336777777777773 2232 267755 699999999
Q ss_pred HHHhchhchHHHHHHHHHhccccchhHHHHHHHHHHHHHhhcccCCCccHHHHH-HHHHHHHhcCCChhhHHHHHHHHHH
Q 002370 519 WISAFQTNARPLLLFLAAGISEAVSSNACASALRKICEDASALIDEPSNLEILM-WIGEALEKRHLPLEDEEEVVGAISL 597 (930)
Q Consensus 519 wl~~~p~~L~~vl~~l~~~l~~p~v~~~Aa~al~~lc~~c~~~l~~p~~~~~l~-~~~~~l~~~~l~~~~~~~l~eai~~ 597 (930)
|+..||+|++++++++++++. |.|+.+||.||.+||++|+..+. | +.+.++ .+...+.++.++.+.+..+++++|.
T Consensus 536 ~l~~~~~~l~~vl~~l~~~l~-~~v~~~A~~al~~l~~~~~~~l~-p-~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~ 612 (971)
T 2x1g_F 536 WLMENPAYIPPAINLLVRGLN-SSMSAQATLGLKELCRDCQLQLK-P-YADPLLNACHASLNTGRMKNSDSVRLMFSIGK 612 (971)
T ss_dssp HHC----CHHHHHHHHHHHHH-SSCHHHHHHHHHHHHHHCHHHHH-H-HHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHHHHHhcc-c-cHHHHHHHHHHHHcCCCCChHHHHHHHHHHHH
Confidence 999999999999999999994 89999999999999999999885 4 555444 4455555666789999999999999
Q ss_pred HHccCCchHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCchhhHHHHHHhHHHHHhhhcccccccccCCCCCC---CC
Q 002370 598 ILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPA---GD 674 (930)
Q Consensus 598 vi~~~p~~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~l~~i~~~l~~~~~~~~~---~~ 674 (930)
+++++|.++ ...++..++.|+++.++++.+.... ++.. .......+++|+.+++.+....+.... ..
T Consensus 613 i~~~~~~~~-~~~~~~~ll~~l~~~l~~~~~~~~~-----~~~~----~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~ 682 (971)
T 2x1g_F 613 LMSLLRPEE-IPKYLDIIVSPCFEELQAICQADSK-----TPAA----RIRTIFRLNMISTLFSSLNTDVDEQATDQPIV 682 (971)
T ss_dssp HHHTSCTTH-HHHHHHHHHHHHHHHHHHHHTC--------CHHH----HHHHHHHHHHHHHHHHHHTC------------
T ss_pred HHHhCCHHH-HHHHHHHHHHHHHHHHHHHHhcCCC-----Chhh----HHHHHHHHHHHHHHHhhcCCCcCcccccccCC
Confidence 999998544 6889999999999999998765421 1111 113456788888888877643221110 15
Q ss_pred chHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhhhhhCCcchHHHHHHHHHH
Q 002370 675 DPIFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTNFVSFQNHECYIRTASVVIE 754 (930)
Q Consensus 675 ~p~~~~~~~i~~~l~~i~~~~~~~~~~v~e~~c~~~~~~i~~l~~~~~p~l~~l~~~l~~~~~~~~~~~~~L~l~~~li~ 754 (930)
+|+.++++++||++..++. .+.++.+++|++|++++++++++|.++.|++|++++.+...|... +++|+|++++.++.
T Consensus 683 ~~~~~~~~~i~~~l~~~l~-~~~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~~~~~~l~~~~~~~-~~~~~l~l~~~~i~ 760 (971)
T 2x1g_F 683 QPVLLVMQRTMPIFKRIAE-MWVEEIDVLEAACSAMKHAITNLRSSFQPMLQDLCLFIVASFQTR-CCAPTLEISKTAIV 760 (971)
T ss_dssp -CCHHHHHTTHHHHHHHHH-HTTTCHHHHHHHHHHHHHHHHHHHC--CTHHHHHHHHHHHHCC---CCHHHHHHHHHHHT
T ss_pred CchHHHHHHHHHHHHHHHH-hccccHHHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHH
Confidence 6889999999999999998 588889999999999999999999999999999999999999875 78999999999999
Q ss_pred HhcCCCCccchHHHHHHHHhhhHHHHHhhcC--CCCCCCCchHHHHHHHHHHHHhhhhHHHHhhchhc-hHHHHHHHHHh
Q 002370 755 EFGHKDEYGPLFVTTFERFSQAASVRALNSS--YICDQEPDLVEAYTNFASTFVRTSRKEVLAASGAL-LEVSFQKAAIC 831 (930)
Q Consensus 755 ~fg~~~~~~~~l~~l~~~l~~~~~~~~l~~~--~~~~~~pD~~~~~f~l~~~~l~~~p~~~~~s~~~~-l~~~l~~~l~~ 831 (930)
.||.++.+.+.+.+++..+..++ +..+.+. .+++++||++++||+|+++++++||..++++ +. ++.++++++.+
T Consensus 761 ~~~~~~~~~~~l~~~~~~~~~~~-~~~l~~~~~~~~~~~pd~~~~~f~ll~~~l~~~p~~~~~s--~~~l~~i~~~~~~~ 837 (971)
T 2x1g_F 761 MFFKDEGCKPLMQQLLREFIQHS-FKLFESTPEQNFSNISDTMETFFGCLTQIIKKIPQVLEDK--TLAYDRLVFYAQRG 837 (971)
T ss_dssp TCCC-----HHHHHHHHHHHHHH-HHHHTSCTTTHHHHTHHHHHHHHHHHHHHHHSSGGGGGCT--TSCHHHHHHHHHHH
T ss_pred HhCCCcchHHHHHHHHHHHHHHH-HHHHhcccccCCccCchHHHHHHHHHHHHHHhCcHHHcCC--cccHHHHHHHHHHH
Confidence 99998777888888888888876 6666542 2566899999999999999999999999987 56 89999999999
Q ss_pred hccCchhHHHHHHHHHHHHHhhhhhhccCCCCCCCCccHHHHHHHHHHhhhHHHHHHHHHHhcccccccchhhhhHHHHH
Q 002370 832 CTAMHRGAALAAMSYLSCFLEECLASLLGYTTSIPEGSFNAMAIQVISHSGEGLVSNVVYALLGVSAMSRIHSGGSCFQK 911 (930)
Q Consensus 832 l~~~e~~~~~a~~~fl~~li~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~lv~~ll~~~~g~~prs~~~~~~~~L~~ 911 (930)
++.+|+++.+++++||+.+++.... .+.+++++.++|+.|+..++.+++|++||+.+++++++|++
T Consensus 838 l~~~~~~~~~s~~~fl~~~i~~~~~--------------~~~~~~~~~~~g~~l~~~l~~~~~~~~~~s~~~~~a~~l~~ 903 (971)
T 2x1g_F 838 MTLPESGAIRNSIQFLTHFVMQSRN--------------HAHVTEVVLATGEQTLYTAMMCVGYLTPRSQVDKFADILLA 903 (971)
T ss_dssp HTSSCSSHHHHHHHHHHHHHHHHTT--------------CHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGGGGGHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHhcCCc--------------hHHHHHHHHHhHHHHHHHHHHHhcccCChhHHHHHHHHHHH
Confidence 9999999999999999999987321 25689999999999999999999999999999999999999
Q ss_pred HHhhcCC
Q 002370 912 KRSQVCN 918 (930)
Q Consensus 912 l~~~~~~ 918 (930)
|..+||.
T Consensus 904 l~~~~~~ 910 (971)
T 2x1g_F 904 MNRKYAA 910 (971)
T ss_dssp HHHHHHH
T ss_pred HHHHCcH
Confidence 9999985
No 4
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=100.00 E-value=2.3e-82 Score=782.83 Aligned_cols=791 Identities=13% Similarity=0.140 Sum_probs=606.4
Q ss_pred HHHHHHHHHH-hccCCChHHHHHHHHHHHHhhcChHHHHHHHHhhccCCCCCCccchhHHhhhHHhHHHhccCcCCCChH
Q 002370 6 QIKVAQAVHV-LNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSA 84 (930)
Q Consensus 6 ~~~v~~av~~-ly~~~d~~~~~~A~~~L~~fq~s~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~ki~~~~~~l~~e 84 (930)
.++|.+||+. +++++|++.|++|++||++||++|+||++|..+|.... ..+.++|||||+||++||+ .+|++
T Consensus 5 ~~~v~~Al~~~~~p~sd~~~r~~A~~~L~~~q~sp~aw~~~~~iL~~~~---~~~~~vr~fa~~~L~~~I~----~l~~e 77 (980)
T 3ibv_A 5 AQDVENAVEAALDPSVGPIIKQQATDFIGSLRSSSTGWKICHEIFSEKT---KYKPSTRLICLQTLSEKVR----EWNNE 77 (980)
T ss_dssp HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHSTTHHHHHHHHTTCTT---TSCHHHHHHHHHHHHHHHH----HCCTT
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHcChhHHHHHHHHHhCCC---CCCHHHHHHHHHHHHHHHH----hCChh
Confidence 4599999965 55566899999999999999999999999999997743 1268999999999999999 79999
Q ss_pred ----HHHHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHHHhc--ccCchHHHHHHHhhcccCCC-chhHHHHHHHhh
Q 002370 85 ----AKDALLNALLVAAKRFS--SGPPQLLTQICLALSALILRAV--EHGKPIEKLFYSLQNLQSQD-NGNMAVLEMLTV 155 (930)
Q Consensus 85 ----~~~~lr~~Ll~~l~~~~--~~~~~v~~kL~~~La~l~~~~~--~W~~~i~~li~~~~~~~~~~-~~~~~~L~iL~~ 155 (930)
++..||+.|++++.+.. .++++|+||+|.+++.++++.+ .||++++++++.++++ +. .....+|++|..
T Consensus 78 ~~~~~~~~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~~Wp~~i~~l~~~~~~~--~~~~~~~~~LriL~~ 155 (980)
T 3ibv_A 78 SNLLELQMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPSNWNDFFASLQGVIAAS--SQSEFSNFYLKVLLS 155 (980)
T ss_dssp TSHHHHHHHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHHH--CCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCcccCchHHHHHHHHhcCC--ChhHHHHHHHHHHHH
Confidence 99999999999999854 4689999999999999999984 7999999999999863 22 234556677777
Q ss_pred hhcccccccccccCCCH---HHHHHHHHHHHhh-hhHHHHHHHHHHhhccCCCCCcchhhhHHHHHHHHHHHHHhccccc
Q 002370 156 LPEEVIDSQASDCNISS---AHRSQYGQELLSH-TPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTE 231 (930)
Q Consensus 156 l~EE~~~~~~~~~~l~~---~~r~~~~~~l~~~-~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~c~~sWi~~~~~~~ 231 (930)
++||+.+... . .+. .|+..+++.+..+ .+.+++.+..++...... .+.++...+|+|+.+|+. |
T Consensus 156 i~EEv~~~~~-~--~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~----~~~~l~~~~L~~l~s~i~-----w 223 (980)
T 3ibv_A 156 IGDEIADSLV-L--KTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNA----KNYGTVGLCLQVYAQWVS-----W 223 (980)
T ss_dssp HHHHHCCCCS-C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHTT-----T
T ss_pred hHHHHHhccc-c--cCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhcc----CCHHHHHHHHHHHHHHHh-----h
Confidence 7799986532 1 232 4555677777765 444444444333331100 234688999999999999 8
Q ss_pred cCcchhcccchHHHHHHhcCCCCcHHHHHHHHHHHHhccCChhH--HHHhhhhhhHHhhhchhhc-cCcHhHHhhHHHHH
Q 002370 232 ISQGSLAAHPLLNFVFNSLQVQSSFDVAIEVLVELVGRHEGLPQ--ALLCRVPFLKELLLLPALT-DGDEKVIGGLACLM 308 (930)
Q Consensus 232 ~~~~~i~~~~ll~~l~~~L~~~~~~~~a~~~l~ei~~~~~~~~~--~l~~~~~~l~~~~~~~~~~-~~d~d~~~~l~~l~ 308 (930)
+|.+.+.++++++.+|+.|.+++++++|++||+++++++++... .++.. +++.+.+.. ... ++|.|+.+++|+++
T Consensus 224 i~~~~i~~~~ll~~l~~~L~~~~~r~~A~ecL~ei~~k~~~~~~k~~li~~-l~L~~~~~~-l~~~~~D~d~~~~la~L~ 301 (980)
T 3ibv_A 224 ININLIVNEPCMNLLYSFLQIEELRCAACETMTEIVNKKMKPLEKLNLLNI-LNLNLFFSK-SQEQSTDPNFDEHVAKLI 301 (980)
T ss_dssp SCHHHHHCHHHHHHHHHHTTSHHHHHHHHHHHHHHHHSCCCHHHHHHHHHH-HHHHHHHCC------CCHHHHHHHHHHH
T ss_pred cCHHhhhcchHHHHHHHHcCChHHHHHHHHHHHHHHHcCCChhhHHHHHHH-HhHHHHHHH-HhcccccHHHHHHHHHHH
Confidence 89999888999999999999999999999999999999876322 22222 355665542 222 68899999999999
Q ss_pred HHHHHhhhHHHHhcC------------hhHHHHHHHHHhcccCCCCCchhhhhcHHHHHHHHHHhhccchhhhhhhhhhh
Q 002370 309 SEIGQAAPSLIVEAS------------PEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAKNKKHVE 376 (930)
Q Consensus 309 ~~~~e~~~~~l~~~~------------~~~~~ll~~ll~~~~~p~~d~~v~~~~~~fW~~l~~~l~~~~~~~~~~~~~~~ 376 (930)
+++|+.+... .+.+ +.+..+++++|.|++|| +++|+..+++||+.+.+.+...+ .+....
T Consensus 302 ~~~ge~l~~~-~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~--~deVs~~t~~Fw~~~l~~~~~~~-----~~~~~~ 373 (980)
T 3ibv_A 302 NAQGVELVAI-KSDPSELSPELKENCSFQLYNLFPYLIRYLSDD--YDETSTAVFPFLSDLLVSLRKES-----SSKELS 373 (980)
T ss_dssp HHHHHHHHHH-HTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCS--SHHHHHTTHHHHHHHHHHHHHHT-----TSCCCC
T ss_pred HHHHHHHHHH-ccCccccchhhhhhHHHHHHHHHHHHHHHhCCC--chhHHHHHHHHHHHHHHHHHhcc-----cccccc
Confidence 9999999998 6555 44568999999999998 78999999999999876542111 012345
Q ss_pred hhcHHHHHHHHHHHHHHhccCCC-CCCCCCCCCCCchHHHHHHHHHHHHHHHHHhcCchHHHHHHHHhhh----cCC--C
Q 002370 377 DMFFSVFSALLDALLLRAQVDES-SFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSATFIQKVFFGSW----GSA--N 449 (930)
Q Consensus 377 ~~~~~~~~~Ll~~l~~k~~~p~~-~~~~~~~~d~~d~f~~~R~~~~d~l~~~~~~l~~~~~l~~~~~~~~----~~~--~ 449 (930)
+.++|++.+|++++++||+||++ +|++++|.||+++|.+||++++ ++.+++.++|++.++.++++.+. ... .
T Consensus 374 ~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~-~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~ 452 (980)
T 3ibv_A 374 ASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLK-IFQDTINSIDSSLFSSYMYSAITSSLSTAATLS 452 (980)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHH-HHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHH-HHHHHHHhcChHHHHHHHHHHHHHHHHHHhccc
Confidence 77899999999999999999987 3432334577889999999999 99999999999888874443321 111 1
Q ss_pred CCCCchhhhHHHHHHHhhhhccccCC-----CccchhHHHHHHHHhc-----cCchhhhhhHHHHHHHHHHHHHHhhHHH
Q 002370 450 VPIPWKEVETKLFALNVVSEVVLQEG-----QAFDFSVIMQLVAVLS-----ASRSEELKGFMHIVYRSLADVIGSYSKW 519 (930)
Q Consensus 450 ~~~~W~~~Ea~L~~l~~iae~~~~~~-----~~~~l~~i~~~l~~l~-----~~~~~~~~~~~~v~~~t~~~~ig~y~~w 519 (930)
.+.+|+++||+||+++++||++.... ....+|.+++++..+. +++|+ .|++++ |+++|||++|
T Consensus 453 ~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp------~V~~~~-~~~l~rys~~ 525 (980)
T 3ibv_A 453 PENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHP------LVQLLY-MEILVRYASF 525 (980)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCH------HHHHHH-HHHHHHTGGG
T ss_pred CCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCH------HHHHHH-HHHHHHHHHH
Confidence 23569999999999999999987421 1123678888887763 24442 267766 7999999999
Q ss_pred HHhchhchHHHHHHHHH--hcccc--chhHHHHHHHHHHHHHhhcccCCCccHHHHHHHHHHHHhcCC------------
Q 002370 520 ISAFQTNARPLLLFLAA--GISEA--VSSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHL------------ 583 (930)
Q Consensus 520 l~~~p~~L~~vl~~l~~--~l~~p--~v~~~Aa~al~~lc~~c~~~l~~p~~~~~l~~~~~~l~~~~l------------ 583 (930)
|..||++++++|+++++ |+++| +|+.+||+||++||++|++++. |+..+++..+...+.....
T Consensus 526 ~~~~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~-~~~~~il~~l~~lL~~~~~~~~~~~~~~~~~ 604 (980)
T 3ibv_A 526 FDYESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVV-NYTESSLAMLGDLLNISVSPVTDMDAPVPTL 604 (980)
T ss_dssp GGTCCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCS-SSHHHHHHHTTGGGCCCCCCCCC--CSSCCH
T ss_pred HhcCchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhh-hHHHHHHHHHHHhhcCcCCCCCcccccccch
Confidence 99999999999999999 99875 5999999999999999999986 5444444444443331111
Q ss_pred -------ChhhHHHHHHHHHHHHccCC-chHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCchhhHHHHHHhHHHHHh
Q 002370 584 -------PLEDEEEVVGAISLILGSVS-NKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYR 655 (930)
Q Consensus 584 -------~~~~~~~l~eai~~vi~~~p-~~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~ 655 (930)
..+++.+++||+|.+++..+ +.+.+..+++.++.|++++++++++...... .+.. ++...+..+.+
T Consensus 605 ~~~~~~~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~~ll~pl~~~l~~~l~~~~~~~----~~~~--~i~~~i~al~~ 678 (980)
T 3ibv_A 605 NSSIRNSDFNSQLYLFETVGVLISSGNLTPEEQALYCDSLINALIGKANAALSSDLSAL----ENII--SVYCSLMAIGN 678 (980)
T ss_dssp HHHHHTTTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTSCC------CHHH--HHHHHHHHHHH
T ss_pred hhhcccCCchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCc----cHHH--HHHHHHHHHHH
Confidence 13479999999999998864 2344789999999999999999997654211 1111 22223333444
Q ss_pred hhcccccccccCCCCCCCCchHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHh
Q 002370 656 MGTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTN 735 (930)
Q Consensus 656 l~~i~~~l~~~~~~~~~~~~p~~~~~~~i~~~l~~i~~~~~~~~~~v~e~~c~~~~~~i~~l~~~~~p~l~~l~~~l~~~ 735 (930)
+++.|+.. +...+|+..+++++|+++..+++ .|+++..|+|++|.+++|++.++|.++.|++|++++.++..
T Consensus 679 lakgf~~~-------~~~~~p~~~~f~~~~~~il~~l~-~~~~~~~irea~~~~~~r~i~~lg~~~~p~lp~~i~~ll~~ 750 (980)
T 3ibv_A 679 FAKGFPAR-------GSEEVAWLASFNKASDEIFLILD-RMGFNEDIRGAVRFTSGRIINVVGPDMLPKVPQLISILLNS 750 (980)
T ss_dssp HHHTSCSC-------C-CCCSHHHHHHHHHHHHHHHHH-HSCCSHHHHHHHHHHHHHHTTTTHHHHTTTHHHHHHHHHHH
T ss_pred HhccCCcc-------cCCCCcHHHHHHHHHHHHHHHHH-hcCCcHHHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHHhc
Confidence 44444322 12346799999999999999998 69999999999999999999999999999999999999998
Q ss_pred hhhhCCcchHHHHHHHHHHHhcCCCCccchHHHHHHHHhhhHHHHHhhcCC----CCCCCCchHHHHHHHHHHHHhh-hh
Q 002370 736 FVSFQNHECYIRTASVVIEEFGHKDEYGPLFVTTFERFSQAASVRALNSSY----ICDQEPDLVEAYTNFASTFVRT-SR 810 (930)
Q Consensus 736 ~~~~~~~~~~L~l~~~li~~fg~~~~~~~~l~~l~~~l~~~~~~~~l~~~~----~~~~~pD~~~~~f~l~~~~l~~-~p 810 (930)
|..+ ++++||++++++|++||++ +.+.+.+++..+.+++ +..+.++. .+++..|+.++||.|+..++++ .+
T Consensus 751 ~~~~-e~~~fL~l~~qli~~f~~~--~~~~l~~ll~~l~~~i-f~~l~~~~~~td~~r~~~~l~r~~~~fl~~i~~~~~~ 826 (980)
T 3ibv_A 751 IDMN-ELVDVLSFISQLIHIYKDN--MMEITNRMLPTLLMRI-FSSLSAAPQGTDDAVKQNDLRKSYISFILQLLNKGFG 826 (980)
T ss_dssp CCTT-THHHHHHHHHHHHHHTTTT--SHHHHHHHHHHHHHHH-HHHTTC----CCHHHHHHHHHHHHHHHHHHHHHTTCT
T ss_pred CCHH-HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH-HHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCch
Confidence 8865 8999999999999999986 8889999999998987 77776521 1234578889999999999996 57
Q ss_pred HHHHhhc-hhchHHHHHHHH-HhhccCchhHHHHHHHHHHHHHhhh
Q 002370 811 KEVLAAS-GALLEVSFQKAA-ICCTAMHRGAALAAMSYLSCFLEEC 854 (930)
Q Consensus 811 ~~~~~s~-~~~l~~~l~~~l-~~l~~~e~~~~~a~~~fl~~li~~~ 854 (930)
.+|++.. .+.++.++...+ .+...+|+.+.|+|+.|++++++.-
T Consensus 827 ~v~~s~~n~~~l~~~l~~l~~~a~~~~d~~~~K~a~~~l~~~v~~~ 872 (980)
T 3ibv_A 827 SILFTEENQVYFDPLINSILHFANLVGEPATQKSSIALVSKMVSLW 872 (980)
T ss_dssp GGGGSHHHHTTHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHC-
T ss_pred hhhcCCcchHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHH
Confidence 7776543 246777777666 3445789999999999999999764
No 5
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=100.00 E-value=7.9e-79 Score=768.96 Aligned_cols=843 Identities=20% Similarity=0.324 Sum_probs=676.0
Q ss_pred HHHHHHHHHHHhccCCChHHHHHHHHHHHHhhcChHHHHHHHHhhccCCCCCCccchhHHhhhHHhHHHhccCcCCCChH
Q 002370 5 LQIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSA 84 (930)
Q Consensus 5 ~~~~v~~av~~ly~~~d~~~~~~A~~~L~~fq~s~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~ki~~~~~~l~~e 84 (930)
..++|.++++++|.++|++.|++|++||++||++|++|.+|..||... .+.++|||||++|+++|+++|+.+|++
T Consensus 22 ~~~~l~~~l~~l~~~~~~~~r~~A~~~L~~~~~~p~~~~~~~~lL~~~-----~~~~vr~~aa~~L~~~i~~~w~~l~~~ 96 (963)
T 2x19_B 22 TVENVEKALHQLYYDPNIENKNLAQKWLMQAQVSPQAWHFSWQLLQPD-----KVPEIQYFGASALHIKISRYWSDIPTD 96 (963)
T ss_dssp CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHSTTHHHHHHHHTSTT-----SCHHHHHHHHHHHHHHHHHCGGGSCGG
T ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCC-----CchHHHHHHHHHHHHHHHhCHHhCCHH
Confidence 366899999998888899999999999999999999999999999753 357999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhc--ccCchHHHHHHHhhcccC---CCchhHHHHHHHhhhhcc
Q 002370 85 AKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRAV--EHGKPIEKLFYSLQNLQS---QDNGNMAVLEMLTVLPEE 159 (930)
Q Consensus 85 ~~~~lr~~Ll~~l~~~~~~~~~v~~kL~~~La~l~~~~~--~W~~~i~~li~~~~~~~~---~~~~~~~~L~iL~~l~EE 159 (930)
++..||+.|++++.++..+++.|++|+|.+++.++.+.+ .||+++++++..+++..+ ++.....++.+|+.++||
T Consensus 97 ~~~~ir~~ll~~l~~~~~~~~~ir~kl~~~la~i~~~~~p~~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~l~ee 176 (963)
T 2x19_B 97 QYESLKAQLFTQITRFASGSKIVLTRLCVALASLALSMMPDAWPCAVADMVRLFQAEDSPVDGQGRCLALLELLTVLPEE 176 (963)
T ss_dssp GHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHCC------CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCccccchHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhCHHH
Confidence 999999999999998765689999999999999999965 699999999998864110 233678999999999999
Q ss_pred cccccccccCCCHHHHHHHHHHHHhhhhHHHHHHHHHHhhccCCCCCcchhhhHHHHHHHHHHHHHhccccccCcchhcc
Q 002370 160 VIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAA 239 (930)
Q Consensus 160 ~~~~~~~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~c~~sWi~~~~~~~~~~~~i~~ 239 (930)
+.+.+ .+..+|..+++.+....+.|++++.++++...+ +..+...+++|+.+|++.+ .+. ...
T Consensus 177 ~~~~~-----~~~~~r~~~~~~l~~~~~~i~~ll~~~l~~~~~------~~~~~~~~l~~l~~wi~~~----~~~--~~~ 239 (963)
T 2x19_B 177 FQTSR-----LPQYRKGLVRTSLAVECGAVFPLLEQLLQQPSS------PSCVRQKVLKCFSSWVQLE----VPL--QDC 239 (963)
T ss_dssp HTTCC-----C---------CCSGGGHHHHHHHHHHHHSCTTC------CHHHHHHHHHHHHHHHTSS----CCG--GGT
T ss_pred Hhccc-----CcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC------chHHHHHHHHHHHHHHcCC----CCc--ccc
Confidence 97532 245677777777888899999999998865421 1248889999999999954 222 235
Q ss_pred cchHHHHHHhcCCCCcHHHHHHHHHHHHhccC--C---hhHHHHhhhhhhHHhhhchhhccCcHhHHhhHHHHHHHHHHh
Q 002370 240 HPLLNFVFNSLQVQSSFDVAIEVLVELVGRHE--G---LPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMSEIGQA 314 (930)
Q Consensus 240 ~~ll~~l~~~L~~~~~~~~a~~~l~ei~~~~~--~---~~~~l~~~~~~l~~~~~~~~~~~~d~d~~~~l~~l~~~~~e~ 314 (930)
+++++.+|+.+.+++.++.|++|+.+++..++ + ....+++.++.+.+.+. .+..++|.+..+++|++|+++++.
T Consensus 240 ~~ll~~l~~~l~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~d~~~~~~~~~l~~~~~~~ 318 (963)
T 2x19_B 240 EALIQAAFAALQDSELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLR-QAVQNGDMETSHGICRIAVALGEN 318 (963)
T ss_dssp HHHHHHHHHHTTSTTTHHHHHHHHHHHHTCTTGGGCHHHHHHHHHHHHTTHHHHH-HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhCCchHHHHHHHHHHHHHcccccccCHHHHHHHHHHHHhhHHHHH-HHHHCCCHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999998653 1 23445666665544333 244567888999999999999999
Q ss_pred hhHHHHhc---ChhHHHHHHHHHhcccCCC---CCchhhhhcHHHHHHHHHHhhccchhhhhhhhhhhhhcHHHHHHHHH
Q 002370 315 APSLIVEA---SPEALALADALLSCVAFPS---EDWEIADSTLQFWSTLASYILGLDASIAKNKKHVEDMFFSVFSALLD 388 (930)
Q Consensus 315 ~~~~l~~~---~~~~~~ll~~ll~~~~~p~---~d~~v~~~~~~fW~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Ll~ 388 (930)
+...+.++ ++.+..++++|+.++.+|| .|++++..+++||+.+.+++..++.. .++.....++|++.+++.
T Consensus 319 ~~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~---~~~~~~~~~~~~l~~l~~ 395 (963)
T 2x19_B 319 HSRALLDQVEHWQSFLALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAE---KQAVYQQVYRPVYFQLVD 395 (963)
T ss_dssp HHHHHHHCGGGHHHHHHHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHH---HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHcCccchHHHHHHHHHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhhhh---hhHHHHHHHHHHHHHHHH
Confidence 99888753 3566789999999999864 25668899999999999876544321 113456778999999999
Q ss_pred HHHHHhccCCCC-CCCCCCCCCCchHHHHHHHHHHHHHHHHHhcCchHHHHHHHHhh---hcCCCCCCCchhhhHHHHHH
Q 002370 389 ALLLRAQVDESS-FNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSATFIQKVFFGS---WGSANVPIPWKEVETKLFAL 464 (930)
Q Consensus 389 ~l~~k~~~p~~~-~~~~~~~d~~d~f~~~R~~~~d~l~~~~~~l~~~~~l~~~~~~~---~~~~~~~~~W~~~Ea~L~~l 464 (930)
+++.||.||+++ +. +|+.|++++|++||++++|++.+++.+.|.+ ++..++..+ ......+.+|+.+||++|++
T Consensus 396 ~ll~~~~~p~~~~~~-~~~~de~~~~~~~r~~~~~~L~~~~~~~~~~-~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al 473 (963)
T 2x19_B 396 VLLHKAQFPSDEEYG-FWSSDEKEQFRIYRVDISDTLMYVYEMLGAE-LLSNLYDKLGRLLTSSEEPYSWQHTEALLYGF 473 (963)
T ss_dssp HHHHHHSCCCHHHHH-TSCHHHHHHHHHHHHHHHHHHHHHHHHHTHH-HHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHH
T ss_pred HHHHHHcCCCccccc-CCChhHHHHHHHHHHHHHHHHHHHHHHccHH-HHHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 999999998773 22 3555566789999999999999999998853 454444332 21111346899999999999
Q ss_pred HhhhhccccCCCccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHhchhchHHHHHHHHHhccccchh
Q 002370 465 NVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGISEAVSS 544 (930)
Q Consensus 465 ~~iae~~~~~~~~~~l~~i~~~l~~l~~~~~~~~~~~~~v~~~t~~~~ig~y~~wl~~~p~~L~~vl~~l~~~l~~p~v~ 544 (930)
+++++++.++++ ..++.+++.+..+++ ++ +.++.++ ++++|+|++|+..||++++++++++++++++|.|+
T Consensus 474 ~~i~~~~~~~~~-~~l~~l~~~l~~l~~-~~------~~vr~~~-~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~~~~V~ 544 (963)
T 2x19_B 474 QSIAETIDVNYS-DVVPGLIGLIPRISI-SN------VQLADTV-MFTIGALSEWLADHPVMINSVLPLVLHALGNPELS 544 (963)
T ss_dssp HHHTTSCCSSCC-SHHHHHHHHGGGSCC-CS------HHHHHHH-HHHHHHTHHHHHHCHHHHTTTHHHHHHHTTCGGGH
T ss_pred HHHHhhcCchhh-HHHHHHHHHHHhCCC-Cc------HHHHHHH-HHHHHHHHHHHHhCHHHHHHHHHHHHHHhCCchHH
Confidence 999999886443 225556665545543 12 1256655 79999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcccCCCccHHHH-HHHHHHHHhcCCChhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHHH
Q 002370 545 NACASALRKICEDASALIDEPSNLEIL-MWIGEALEKRHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAI 623 (930)
Q Consensus 545 ~~Aa~al~~lc~~c~~~l~~p~~~~~l-~~~~~~l~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~~l~~ll~p~~~~l 623 (930)
.+|+.||.+||++|+..+. | +.+.+ ..+...+.+..++.+.+..+++++|.+++++| .+....++..++.|+.+.|
T Consensus 545 ~~A~~al~~l~~~~~~~l~-p-~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~-~~~~~~~~~~l~~~l~~~l 621 (963)
T 2x19_B 545 VSSVSTLKKICRECKYDLP-P-YAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQ-VEEILKNLHSLISPYIQQL 621 (963)
T ss_dssp HHHHHHHHHHHHHTGGGCT-T-THHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-h-hHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999886 5 55544 44455555556788999999999999999998 4447899999999999999
Q ss_pred HhhhhccCCCCCCCCchhhHHHHHHhHHHHHhhhcccccccccCCCC------------CCCCchHHHHHHHHHHHHHHH
Q 002370 624 GKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTN------------PAGDDPIFALLRVFWPMLEKL 691 (930)
Q Consensus 624 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~l~~i~~~l~~~~~~~------------~~~~~p~~~~~~~i~~~l~~i 691 (930)
+++.++.. ++... ......+++++.+++.+....+.. +...+|+..+++.+||++..+
T Consensus 622 ~~~~~~~~------~~~~~----~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 691 (963)
T 2x19_B 622 EKLAEEIP------NPSNK----LAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKV 691 (963)
T ss_dssp HHHHSSCS------CHHHH----HHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCC------CHHHH----HHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHHHHHHHHHH
Confidence 99865431 22111 123456777877787775322111 124578899999999999999
Q ss_pred HHhhhccchHHHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhhhhhCCcchHHHHHHHHHHHhcCCCCccchHHHHHH
Q 002370 692 FRSEHMENGNLSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTNFVSFQNHECYIRTASVVIEEFGHKDEYGPLFVTTFE 771 (930)
Q Consensus 692 ~~~~~~~~~~v~e~~c~~~~~~i~~l~~~~~p~l~~l~~~l~~~~~~~~~~~~~L~l~~~li~~fg~~~~~~~~l~~l~~ 771 (930)
++ .|.++.+++|.+|+++++++.++|.++.|++|++++.+...|..+ +.++++++++.++..||.++.+.+.+.+++.
T Consensus 692 l~-~~~~~~~v~e~~~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~-~~~~~l~l~~~li~~f~~~~~~~~~~~~~l~ 769 (963)
T 2x19_B 692 LS-KWLNDAQVVEAVCAIFEKSVKTLLDDFAPMVPQLCEMLGRMYSTI-PQASALDLTRQLVHIFAHEPAHFPPIEALFL 769 (963)
T ss_dssp HH-HHTTCHHHHHHHHHHHHHHHHHSSSTTGGGHHHHHHHHHHHHHHS-CCHHHHHHHHHHHHHHTTCTTTCHHHHHHHH
T ss_pred HH-hccCchHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHcC-CccHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 98 588889999999999999999999999999999999999999875 7899999999999999987667777888888
Q ss_pred HHhhhHHHHHhhcCCCCCCCCchHHHHHHHHHHHHhhhhHHHHhhchhc-hHHHHHHHHHhhccCchhHHHHHHHHHHHH
Q 002370 772 RFSQAASVRALNSSYICDQEPDLVEAYTNFASTFVRTSRKEVLAASGAL-LEVSFQKAAICCTAMHRGAALAAMSYLSCF 850 (930)
Q Consensus 772 ~l~~~~~~~~l~~~~~~~~~pD~~~~~f~l~~~~l~~~p~~~~~s~~~~-l~~~l~~~l~~l~~~e~~~~~a~~~fl~~l 850 (930)
.+.+++ +..++ .++.++||++++||.|+.++++++|..++++ +. +..++++++.+++.+|+++.+++++||.++
T Consensus 770 ~~~~~~-l~~~~--~~~~~~pd~~~~~f~ll~~~~~~~~~~~~~~--~~~~~~i~~~~~~~l~~~~~~~~~~~l~~l~~l 844 (963)
T 2x19_B 770 LVTSVT-LTLFQ--QGPRDHPDIVDSFMQLLAQALKRKPDLFLCE--RLDVKAVFQCAVLALKFPEAPTVKASCGFFTEL 844 (963)
T ss_dssp HHHHHH-HHHHH--HCTTTCHHHHHHHHHHHHHHHHHCGGGGGCT--TSCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHh--hCcccCchHHHHHHHHHHHHHHhCcHHHcCC--cccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 777776 66665 3567899999999999999999999999864 45 899999999999999999999999999999
Q ss_pred HhhhhhhccCCCCCCCCccHHHHHHHHHHhhhHHHHHHHHHHhcccccccchhhhhHHHHHHHhhcCC
Q 002370 851 LEECLASLLGYTTSIPEGSFNAMAIQVISHSGEGLVSNVVYALLGVSAMSRIHSGGSCFQKKRSQVCN 918 (930)
Q Consensus 851 i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~lv~~ll~~~~g~~prs~~~~~~~~L~~l~~~~~~ 918 (930)
++..+. .+.+++++.++|+.|+..++.+++|+.||+.++.++++|++|..++|.
T Consensus 845 ~~~~~~--------------~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~il~~l~~~~~~ 898 (963)
T 2x19_B 845 LPRCGE--------------VESVGKVVQEDGRMLLIAVLEAIGGQASRSLMDCFADILFALNKHCFS 898 (963)
T ss_dssp GGGTTS--------------SCHHHHHTTTSHHHHHHHHHHHHTTTSCGGGHHHHHHHHHHHHHHSHH
T ss_pred HhcCCC--------------hHHHHHHHHHHHHHHHHHHHHHhcccCChhHHHHHHHHHHHHHHHChH
Confidence 986331 135778889999999999999999999999999999999999888764
No 6
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=100.00 E-value=1e-68 Score=678.14 Aligned_cols=832 Identities=14% Similarity=0.149 Sum_probs=621.9
Q ss_pred HHHHHHHHHHhccCCChHHHHHHHHHHHHhhcChHHHHHHHHhhccCCCCCCccchhHHhhhHHhHHHhccCcCCCChHH
Q 002370 6 QIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAA 85 (930)
Q Consensus 6 ~~~v~~av~~ly~~~d~~~~~~A~~~L~~fq~s~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~ki~~~~~~l~~e~ 85 (930)
.+++.++++++|+ |+++.|++|+++|++||++|++|.+|..+|..+ .+.++|||||++|+++|+++|..+|+++
T Consensus 15 ~~~l~~~l~~~~~-p~~~~r~~Ae~~L~~~~~~p~~~~~l~~iL~~s-----~~~~vr~~aa~~Lk~~i~~~W~~l~~~~ 88 (1049)
T 3m1i_C 15 IALLDQVVSTFYQ-GSGVQQKQAQEILTKFQDNPDAWQKADQILQFS-----TNPQSKFIALSILDKLITRKWKLLPNDH 88 (1049)
T ss_dssp HHHHHHHHHHHHH-CCHHHHHHHHHHHHHHHHSTTGGGGHHHHHHHC-----SCHHHHHHHHHHHHHHHHHTGGGSCHHH
T ss_pred HHHHHHHHHHHhC-CChHHHHHHHHHHHHHHhCchHHHHHHHHHhhC-----CCHHHHHHHHHHHHHHHHhhCccCCHHH
Confidence 4589999999995 456789999999999999999999999999764 3579999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCC------CHHHHHHHHHHHHHHHHHhc--ccCchHHHHHHHhhcccCCCchhHHHHHHHhhhh
Q 002370 86 KDALLNALLVAAKRFSSG------PPQLLTQICLALSALILRAV--EHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLP 157 (930)
Q Consensus 86 ~~~lr~~Ll~~l~~~~~~------~~~v~~kL~~~La~l~~~~~--~W~~~i~~li~~~~~~~~~~~~~~~~L~iL~~l~ 157 (930)
+..||+.|++++.+...+ ++.|++|+|.++|.++.+.. .||++++++++.+++ ++...+..+.+|+.++
T Consensus 89 ~~~ir~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~Wp~ll~~L~~~~~~---~~~~~~~~l~~L~~l~ 165 (1049)
T 3m1i_C 89 RIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSSS---SVNVCENNMIVLKLLS 165 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHTT---CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHcc---ChHHHHHHHHHHHHHH
Confidence 999999999999875433 37899999999999999964 699999999999863 3445788999999999
Q ss_pred cccccccccccCCCHHHHHHHHHHHHhhhhHHHHHHHHHHhhccCCCCCcchhhhHHHHHHHHHHHHHhccccccCcchh
Q 002370 158 EEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSL 237 (930)
Q Consensus 158 EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~c~~sWi~~~~~~~~~~~~i 237 (930)
||+.+.+.. .++..+|..+++.+....+.|+.++.+++... ++..++..+|+|+.+|+. |++.+.+
T Consensus 166 eev~~~~~~--~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~-------~~~~~~~~aL~~l~~~l~-----wi~~~~~ 231 (1049)
T 3m1i_C 166 EEVFDFSAE--QMTQAKALHLKNSMSKEFEQIFKLCFQVLEQG-------SSSSLIVATLESLLRYLH-----WIPYRYI 231 (1049)
T ss_dssp HHHHTSCTT--TSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHTT-----TSCTHHH
T ss_pred HHHHHhcch--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------CCHHHHHHHHHHHHHHHh-----hCCHHHH
Confidence 999754322 25667888888888889999999999988764 234688999999999988 6787777
Q ss_pred cccchHHHHH-HhcCCCCcHHHHHHHHHHHHhccC-C----hhH---HHHhhhhh------------hHHhhhchhhccC
Q 002370 238 AAHPLLNFVF-NSLQVQSSFDVAIEVLVELVGRHE-G----LPQ---ALLCRVPF------------LKELLLLPALTDG 296 (930)
Q Consensus 238 ~~~~ll~~l~-~~L~~~~~~~~a~~~l~ei~~~~~-~----~~~---~l~~~~~~------------l~~~~~~~~~~~~ 296 (930)
..+++++.++ ..+.+++++.+|++|+.++++... + +.. .+++.++. +...+. ...++
T Consensus 232 ~~~~ll~~l~~~~l~~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~--~~~~~ 309 (1049)
T 3m1i_C 232 YETNILELLSTKFMTSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYA--NANGN 309 (1049)
T ss_dssp HSSSHHHHHHTHHHHSHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHH--HTCTT
T ss_pred hhhhHHHHHHHHhCCCHhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHHHHHHHHHhhCCCcccHHHHhc--cCCcc
Confidence 7788999999 566788999999999999998752 2 121 23343333 112221 12355
Q ss_pred cHhHHhhHHHHHHHHHHhhhHHHHhcC---hhHHHHHHHHHhcccCCCCCchhhhhcHHHHHHHHHHhhccchhhhhhhh
Q 002370 297 DEKVIGGLACLMSEIGQAAPSLIVEAS---PEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAKNKK 373 (930)
Q Consensus 297 d~d~~~~l~~l~~~~~e~~~~~l~~~~---~~~~~ll~~ll~~~~~p~~d~~v~~~~~~fW~~l~~~l~~~~~~~~~~~~ 373 (930)
|.++.+++|++|+++++.+...+.+.+ +....++++++.++.++ |.+++..+++||+.+.++++. .+
T Consensus 310 d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~--d~~v~~~~lefw~~l~~~l~~--------~~ 379 (1049)
T 3m1i_C 310 DQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIE--ERELFKTTLDYWHNLVADLFY--------EP 379 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHTSS--CHHHHHHHHHHHHHHHHHHHH--------ST
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHcCC--cHHHHHHHHHHHHHHHHHHHh--------ch
Confidence 777889999999999999998887632 24567899999999997 788999999999999987532 02
Q ss_pred hhhhhcHHHHHHHHHHHHHHhccCCCC-CCCCCCC------CCCchHHHHHHHHHHHHHHHHHhcCchHHHHHHHHhhhc
Q 002370 374 HVEDMFFSVFSALLDALLLRAQVDESS-FNDDGMV------DLPDGLVQFRMNLVELLVDICQLLRSATFIQKVFFGSWG 446 (930)
Q Consensus 374 ~~~~~~~~~~~~Ll~~l~~k~~~p~~~-~~~~~~~------d~~d~f~~~R~~~~d~l~~~~~~l~~~~~l~~~~~~~~~ 446 (930)
.....+++++.+|+.+++.||+||+|. |.++++. ++++|-..+|+.++|++..++.+.+ ..++..++..+..
T Consensus 380 ~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~~l~~~~~-~~~l~~v~~~l~~ 458 (1049)
T 3m1i_C 380 LKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNV-IDTEEIMISKLAR 458 (1049)
T ss_dssp TCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHHHHHHHHCH-HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHHHHHHHHHHHHccCH-HHHHHHHHHHHHH
Confidence 345678899999999999999998763 2111110 1112222567789999999987755 3455555444322
Q ss_pred C-CCCCCCchhhhHHHHHHHhhhhccccCCCccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHhchh
Q 002370 447 S-ANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQT 525 (930)
Q Consensus 447 ~-~~~~~~W~~~Ea~L~~l~~iae~~~~~~~~~~l~~i~~~l~~l~~~~~~~~~~~~~v~~~t~~~~ig~y~~wl~~~p~ 525 (930)
. ...+.+|+.+||++|+++++++++.+......++.+++.+..++.....+. ..+ ++..++|+++|+|++|+..||+
T Consensus 459 ~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~-~~~-~v~~~~~~~lgry~~~~~~~~~ 536 (1049)
T 3m1i_C 459 QIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKD-NKA-VVASDIMYVVGQYPRFLKAHWN 536 (1049)
T ss_dssp HHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHH-HHH-HHHHHHHHHHHHCHHHHHHCHH
T ss_pred HhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhcccc-chH-HHHHHHHHHHHHHHHHHHhHHH
Confidence 1 113578999999999999999988643211125777777777765421100 012 3333458999999999999999
Q ss_pred chHHHHHHHHHhccc--cchhHHHHHHHHHHHHHhhcccC-------CCccHHHHHHHHHHHHhcCCChhhHHHHHHHHH
Q 002370 526 NARPLLLFLAAGISE--AVSSNACASALRKICEDASALID-------EPSNLEILMWIGEALEKRHLPLEDEEEVVGAIS 596 (930)
Q Consensus 526 ~L~~vl~~l~~~l~~--p~v~~~Aa~al~~lc~~c~~~l~-------~p~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~ 596 (930)
+++++++++++++++ |.|+.+||.||.+||++|+..+. .| +++.+.+.+..+.. .++.++...++||+|
T Consensus 537 ~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p-~~~~il~~l~~~~~-~~~~~~~~~~~eai~ 614 (1049)
T 3m1i_C 537 FLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEP-FIQTIIRDIQKTTA-DLQPQQVHTFYKACG 614 (1049)
T ss_dssp HHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSC-HHHHHHHTHHHHHT-TSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCc-HHHHHHHHHHHHHH-hCCHHHHHHHHHHHH
Confidence 999999999999987 56999999999999999998763 13 45544443333322 367888999999999
Q ss_pred HHHccCCchHHHHHHHHHHHHHHHHHHHhhhhccCC-CCCCCCchhhHHHHHHhHHHHHhhhcccccccccCC-------
Q 002370 597 LILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNN-HSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLP------- 668 (930)
Q Consensus 597 ~vi~~~p~~~~~~~~l~~ll~p~~~~l~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~l~~l~~i~~~l~~~~~------- 668 (930)
.++++.|+.+....++..++.|++++|.+++.+... .+...+++.. +.....+.+++.+.+.+...+.
T Consensus 615 ~ii~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~l~~~l~~~~~~~~~l~~~f~p~~~~i~ 690 (1049)
T 3m1i_C 615 IIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETV----KIIANIIKTNVAVCTSMGADFYPQLGHIY 690 (1049)
T ss_dssp HHHHTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGSHHHH----HHHHHHHHHHHHHHHHHGGGGHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhcCHHHH----HHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 999999965557899999999999999998865321 1111122111 1112223333333332221110
Q ss_pred ---------------------CCCCCCchHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHhhhhhHhhHHH
Q 002370 669 ---------------------TNPAGDDPIFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQHFVTLLPQ 727 (930)
Q Consensus 669 ---------------------~~~~~~~p~~~~~~~i~~~l~~i~~~~~~~~~~v~e~~c~~~~~~i~~l~~~~~p~l~~ 727 (930)
......+|....++.+||.+..++. .|..+.++ ++..+.|++|+
T Consensus 691 ~~~l~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~l~~ll~-~~~~~~~~--------------l~~~~~~~~~~ 755 (1049)
T 3m1i_C 691 YNMLQLYRAVSSMISAQVAAEGLIATKTPKVRGLRTIKKEILKLVE-TYISKARN--------------LDDVVKVLVEP 755 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHH-HHHHHCSC--------------HHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHccCchhhhhHHHHHHHHHHHHHHHHHH-HHHHhCCC--------------HHHHHHHHHHH
Confidence 0000123444444444444444443 23322222 22235688999
Q ss_pred HHHHHHHhhhhhCCcch-----HHHHHHHHHHHhcCCCCccchHHHHHHHHhhhHHHHHhhcCCCCCCCCchHHHHHHHH
Q 002370 728 VLDCLSTNFVSFQNHEC-----YIRTASVVIEEFGHKDEYGPLFVTTFERFSQAASVRALNSSYICDQEPDLVEAYTNFA 802 (930)
Q Consensus 728 l~~~l~~~~~~~~~~~~-----~L~l~~~li~~fg~~~~~~~~l~~l~~~l~~~~~~~~l~~~~~~~~~pD~~~~~f~l~ 802 (930)
+++.++..|.+ ++++ +|++++.++..+|+ .+.+.+..++..+.+++ +.++. .+++++||++++||.|+
T Consensus 756 ~l~~ll~~~~~--~~~~~~~~~~l~l~~~ii~~~~~--~~~~~l~~i~~~l~~~~-~~~i~--~~~~~~pd~~~~~f~ll 828 (1049)
T 3m1i_C 756 LLNAVLEDYMN--NVPDARDAEVLNCMTTVVEKVGH--MIPQGVILILQSVFECT-LDMIN--KDFTEYPEHRVEFYKLL 828 (1049)
T ss_dssp HHHHHHHHHHH--SCGGGCCTHHHHHHHHHHHHHGG--GCHHHHHHHHHHHHHHH-HHHHS--SCSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--CCcccccHHHHHHHHHHHHHHHH--hhhhhHHHHHHHHHHHH-HHHHh--cchhhCHHHHHHHHHHH
Confidence 99999999975 3444 99999999999995 45567777888888887 77775 45788999999999999
Q ss_pred HHHHhhhhHHHHhhchhchHHHHHHHHHhhccCchhHHHHHHHHHHHHHhhhhhhccCCCCCCCCccHHHHHHHHHHhhh
Q 002370 803 STFVRTSRKEVLAASGALLEVSFQKAAICCTAMHRGAALAAMSYLSCFLEECLASLLGYTTSIPEGSFNAMAIQVISHSG 882 (930)
Q Consensus 803 ~~~l~~~p~~~~~s~~~~l~~~l~~~l~~l~~~e~~~~~a~~~fl~~li~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G 882 (930)
++++++||..+++.++..+..++++++++++++|+++.+++++||.++++..+.. .+ .+..+++..++|
T Consensus 829 ~~i~~~~~~~l~~~~~~~~~~v~~~~~~al~~~~~~~~~~~l~~l~~l~~~~~~~----~~-------~~~~~~f~~~~~ 897 (1049)
T 3m1i_C 829 KVINEKSFAAFLELPPAAFKLFVDAICWAFKHNNRDVEVNGLQIALDLVKNIERM----GN-------VPFANEFHKNYF 897 (1049)
T ss_dssp HHHHHHCTHHHHHSCHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHHS----CS-------CHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHcCCHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHhc----CC-------hHHHHHHHHHHH
Confidence 9999999999997443558899999999999999999999999999999987641 11 134677889999
Q ss_pred HHHHHHHHHHhcccccccchhhhhHHHHHHHh
Q 002370 883 EGLVSNVVYALLGVSAMSRIHSGGSCFQKKRS 914 (930)
Q Consensus 883 ~~lv~~ll~~~~g~~prs~~~~~~~~L~~l~~ 914 (930)
..|+..++..+.|...||..+..+++|+++.+
T Consensus 898 ~~l~~~~~~~l~~~~h~s~~~~~~~~l~~l~~ 929 (1049)
T 3m1i_C 898 FIFVSETFFVLTDSDHKSGFSKQALLLMKLIS 929 (1049)
T ss_dssp HHHHHHHHHHHHSTTCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcchHhhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999987
No 7
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=100.00 E-value=2.1e-55 Score=557.23 Aligned_cols=709 Identities=15% Similarity=0.141 Sum_probs=503.4
Q ss_pred HHHHHHHHHHhccC-CChHHHHHHHHHHHHhhcChHHHHHHHHhhccCCCCCCccchhHHhhhHHhHHHhccCcCCCChH
Q 002370 6 QIKVAQAVHVLNHD-TESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSA 84 (930)
Q Consensus 6 ~~~v~~av~~ly~~-~d~~~~~~A~~~L~~fq~s~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~ki~~~~~~l~~e 84 (930)
.+++.++++++|++ +|++.|++|+++|++||++|++|..+..+|... +.+.++||||+++|+++|+++|..+|++
T Consensus 10 ~~~l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~p~~~~~~~~~L~~~----s~~~~vR~~A~~~Lk~~I~~~W~~l~~e 85 (1204)
T 3a6p_A 10 CEQLVKAVTVMMDPNSTQRYRLEALKFCEEFKEKCPICVPCGLRLAEK----TQVAIVRHFGLQILEHVVKFRWNGMSRL 85 (1204)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTST----TSCHHHHHHHHHHHHHHHHHSGGGSCHH
T ss_pred HHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHhCchHHHHHHHHHHcc----CCCHHHHHHHHHHHHHHHHHhcccCCHH
Confidence 45788999998875 578889999999999999999999999988622 3468999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcC----CCHHHHHHHHHHHHHHHHHhc--ccCchHHHHHHHhhcccCCCchhHHHHHHHhhhhc
Q 002370 85 AKDALLNALLVAAKRFSS----GPPQLLTQICLALSALILRAV--EHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPE 158 (930)
Q Consensus 85 ~~~~lr~~Ll~~l~~~~~----~~~~v~~kL~~~La~l~~~~~--~W~~~i~~li~~~~~~~~~~~~~~~~L~iL~~l~E 158 (930)
++..||+.+++++.+... .++.|++|+|.+++.++.+.. .||++++++++.+++ ++..++..|.+|..|+|
T Consensus 86 ~k~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~Wp~ll~~L~~~~~~---~~~~~e~~L~iL~~L~E 162 (1204)
T 3a6p_A 86 EKVYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHWPDMLIELDTLSKQ---GETQTELVMFILLRLAE 162 (1204)
T ss_dssp HHHHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHHHHHT---CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHhcC---CHHHHHHHHHHHHHHHH
Confidence 999999999999987532 468999999999999999975 699999999998875 34567899999999999
Q ss_pred ccccccccccCCCHHHHHHHHHHHHhhhhHHHHHHHHHHhhccC---------CCC--CcchhhhHHHHHHHHHHHHHhc
Q 002370 159 EVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFD---------GGV--PVQLHDRNRKILRCLLSWVRAG 227 (930)
Q Consensus 159 E~~~~~~~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~---------~~~--~~~~~~~~~~~l~c~~sWi~~~ 227 (930)
|+.+.+. +...+|+.+++.+...++.|+.++.+++....+ .+. ..++..+...+|+|+.+|+.
T Consensus 163 ev~~~~~----~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~-- 236 (1204)
T 3a6p_A 163 DVVTFQT----LPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYID-- 236 (1204)
T ss_dssp HHHTSCC----SCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTT--
T ss_pred HHccccc----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHh--
Confidence 9876532 455788888889998999999988887764200 000 00234578899999999998
Q ss_pred cccccCcchhccc--chHHHHHHhcCCCCcHHHHHHHHHHHHhccCChhH--HHHhhhhh--hHHhhhchh-------hc
Q 002370 228 CFTEISQGSLAAH--PLLNFVFNSLQVQSSFDVAIEVLVELVGRHEGLPQ--ALLCRVPF--LKELLLLPA-------LT 294 (930)
Q Consensus 228 ~~~~~~~~~i~~~--~ll~~l~~~L~~~~~~~~a~~~l~ei~~~~~~~~~--~l~~~~~~--l~~~~~~~~-------~~ 294 (930)
|++.+.+... .+++.++..+.+++++.+|++||+++++++++... .++..+.. +...+. .+ +.
T Consensus 237 ---Wi~~~~i~~~~~~ll~~l~~~l~~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~-~~~~~~~~~~~ 312 (1204)
T 3a6p_A 237 ---WVSMSHITAENCKLLEILCLLLNEQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILS-AAQTADGGGLV 312 (1204)
T ss_dssp ---TSCHHHHHTTTSHHHHHHHHGGGCTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHH-HHHTCCCCSCC
T ss_pred ---ccCHHHHHhccchHHHHHHHHcCCHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHH-HhhcCCCCCCc
Confidence 7788776543 49999999999999999999999999998764111 12221100 112221 11 13
Q ss_pred cCcHhHHhhHHHHHHHHHHhhhHHHHh-----cChhHHHHHHHHHhcccCCCCCchhhhhcHHHHHHHHHHhhccchhhh
Q 002370 295 DGDEKVIGGLACLMSEIGQAAPSLIVE-----ASPEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIA 369 (930)
Q Consensus 295 ~~d~d~~~~l~~l~~~~~e~~~~~l~~-----~~~~~~~ll~~ll~~~~~p~~d~~v~~~~~~fW~~l~~~l~~~~~~~~ 369 (930)
++|.++++.+|++++++|+.+...+.+ .++.+..++++++.++.|| +.+++..+++||+.+.++.. .
T Consensus 313 e~d~e~~k~l~~ll~~lg~~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~--~~~vs~~~l~fW~~ll~~~~-~----- 384 (1204)
T 3a6p_A 313 EKHYVFLKRLCQVLCALGNQLCALLGADSDVETPSNFGKYLESFLAFTTHP--SQFLRSSTQMTWGALFRHEI-L----- 384 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCTTHHHHHHHHHHHHTSS--CHHHHHHHHHHHHHHHSCTT-T-----
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhccccccChhHHHHHHHHHHHHHhCc--cHHhHHHHHHHHHHHHhccc-c-----
Confidence 446789999999999999987776653 3456789999999999998 78899999999998766531 0
Q ss_pred hhhhhhhhhcHHHHHHHHHHH---HHHhccCCCCCC-------C--CCCCCCCchHHHHHHHHHHHHHHHHHhcCchH--
Q 002370 370 KNKKHVEDMFFSVFSALLDAL---LLRAQVDESSFN-------D--DGMVDLPDGLVQFRMNLVELLVDICQLLRSAT-- 435 (930)
Q Consensus 370 ~~~~~~~~~~~~~~~~Ll~~l---~~k~~~p~~~~~-------~--~~~~d~~d~f~~~R~~~~d~l~~~~~~l~~~~-- 435 (930)
...+.+.+++.+|++++ +.||+||++... + ++++|.++.|.+||++++|+++.++.+.+...
T Consensus 385 ----~~~~~~~~~l~~Ll~vl~~~l~k~~yp~~~~~~~~~~~~~D~d~~~E~~~~f~~~Rk~~~d~l~~i~~v~p~~~l~ 460 (1204)
T 3a6p_A 385 ----SRDPLLLAIIPKYLRASMTNLVKMGFPSKTDSPSCEYSRFDFDSDEDFNAFFNSSRAQQGEVMRLACRLDPKTSFQ 460 (1204)
T ss_dssp ----TTCHHHHHHHHHHHHHHHHHHSCCCCSSCCSSTHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred ----cccHHHHHHHHHHHHHHHHHHHHhcCccccCCcchhhhhcccCCcHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 11245889999999999 999999986321 1 11112235799999999999999998864321
Q ss_pred -HHHHHHHhhhcC--------------------CCCCCCchhhhHHHHHHHhhhhcccc---CCCcc--chhHHHHHHHH
Q 002370 436 -FIQKVFFGSWGS--------------------ANVPIPWKEVETKLFALNVVSEVVLQ---EGQAF--DFSVIMQLVAV 489 (930)
Q Consensus 436 -~l~~~~~~~~~~--------------------~~~~~~W~~~Ea~L~~l~~iae~~~~---~~~~~--~l~~i~~~l~~ 489 (930)
+...+.+.+... ...+..|...||..++++++++++.. .+... .++.+++.+..
T Consensus 461 ~v~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ea~~~~leav~~~~~~~~e~~~l~~~~~~~Ll~~ll~ 540 (1204)
T 3a6p_A 461 MAGEWLKYQLSTFLDAGSVNSCSAVGTGEGSLCSVFSPSFVQWEAMTLFLESVITQMFRTLNREEIPVNDGIELLQMVLN 540 (1204)
T ss_dssp HHHHHHHHHHTCC-----------------CCSCSSSHHHHHHHHHHHHHHHHHHHHHHHSCTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcccccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHh
Confidence 222222222210 01123599999999999999888731 11111 02345555444
Q ss_pred h-ccCchhhhhhHHHHHHHHHHHHHHhhHHHHHhchhchHHHHHHHHHhccc--------------cchhHHHHHHHHHH
Q 002370 490 L-SASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGISE--------------AVSSNACASALRKI 554 (930)
Q Consensus 490 l-~~~~~~~~~~~~~v~~~t~~~~ig~y~~wl~~~p~~L~~vl~~l~~~l~~--------------p~v~~~Aa~al~~l 554 (930)
+ +++|. ++++. +.++|+|++|+..||++++++|++++.++.+ ++++.+|+.+|.+|
T Consensus 541 ~~~~~p~--------l~~~~-i~~l~~l~~~~~~~p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~al~~L 611 (1204)
T 3a6p_A 541 FDTKDPL--------ILSCV-LTNVSALFPFVTYRPEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACSSIIKM 611 (1204)
T ss_dssp CCCSCHH--------HHHHH-HHHHHHHGGGGGTCGGGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCChH--------HHHHH-HHHHHHHHHHHhcCchHHHHHHHHHHHhhccCCcccccccccHHHHHHHHHHHHHHHHH
Confidence 4 34553 45545 5899999999999999999999999988765 15899999999999
Q ss_pred HHHhhcccCCCccHHHHHHHHHH-HHhcC-CChhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHHHHh-----hh
Q 002370 555 CEDASALIDEPSNLEILMWIGEA-LEKRH-LPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGK-----LI 627 (930)
Q Consensus 555 c~~c~~~l~~p~~~~~l~~~~~~-l~~~~-l~~~~~~~l~eai~~vi~~~p~~~~~~~~l~~ll~p~~~~l~~-----~~ 627 (930)
|++|+..|. | +.+.|.+.+.. +..+. ++.+++..+++|++.+...+|+++.+..+++.++.|++++|.+ .+
T Consensus 612 ~~~~~~~L~-p-~~~~i~~~~~~~l~~~~~l~~~e~~~L~eal~~ia~~~~~~~~~~~~l~~ll~P~~~~w~~~~~~~~~ 689 (1204)
T 3a6p_A 612 CRDYPQLVL-P-NFDMLYNHVKQLLSNELLLTQMEKCALMEALVLISNQFKNYERQKVFLEELMAPVASIWLSQDMHRVL 689 (1204)
T ss_dssp HHHCHHHHG-G-GHHHHHHHHHHHHHSTTTSCHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHhhHHHH-H-HHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHccHHHHHhh
Confidence 999999886 3 66666665544 45566 8999999999999999666677777788899999999999885 22
Q ss_pred hccC--------C-C---CCCCCchhh-----HHHHHHhHHHHHhhh---------cc-cccccccCCCCCCCCchHHHH
Q 002370 628 DGDN--------N-H---SLIHNPATY-----TQILSSATRGLYRMG---------TV-FSHLPVPLPTNPAGDDPIFAL 680 (930)
Q Consensus 628 ~~~~--------~-~---~~~~~~~~~-----~~~l~~~~~~l~~l~---------~i-~~~l~~~~~~~~~~~~p~~~~ 680 (930)
.... + . ....++... ...++.....++++. +. |-....+ ...+...||+.+.
T Consensus 690 s~~~~f~~~~G~~~~~~~~~~~d~~~~~r~~l~~~~~~l~~~l~r~~~~~~~~~~~~~gf~~~~~~-~~~p~~~~p~~~~ 768 (1204)
T 3a6p_A 690 SDVDAFIAYVGTDQKSCDPGLEDPCGLNRARMSFCVYSILGVVKRTCWPTDLEEAKAGGFVVGYTS-SGNPIFRNPCTEQ 768 (1204)
T ss_dssp HCHHHHHHHHTSSCC--CTTCCTHHHHHHHHHHHHHHHHHHHHHHCCCCSSHHHHHHTTCEEEECS-SCCEEECCTTHHH
T ss_pred cCHHHHHHHhCCCCCcccccccchhhhhHHHHHHHHHHHHHHHHHhcCCCChhhhhcCCceeccCC-CCCccccCchHHH
Confidence 2210 0 0 001111111 011112233344431 11 1111001 1122345899999
Q ss_pred HHHHHHHHHHHHHhhhc--cchHHHHHHH-------------HHHHHHHHHh-hhhhH-hhHHHHHHHHHHhhhhhCCcc
Q 002370 681 LRVFWPMLEKLFRSEHM--ENGNLSTAAC-------------RALSLAIQSS-GQHFV-TLLPQVLDCLSTNFVSFQNHE 743 (930)
Q Consensus 681 ~~~i~~~l~~i~~~~~~--~~~~v~e~~c-------------~~~~~~i~~l-~~~~~-p~l~~l~~~l~~~~~~~~~~~ 743 (930)
+..+||.+.+++.. +. .++++.+.+| ++.+.|+..- ..... +..+...+.+-.-+... +.+
T Consensus 769 i~~ilP~ll~Ll~~-~~~l~~p~~~~~l~~~~~~~~~~~~~er~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~-re~ 846 (1204)
T 3a6p_A 769 ILKLLDNLLALIRT-HNTLYAPEMLAKMAEPFTKALDMLDAEKSAILGLPQPLLELNDSPVFKTVLERMQRFFSTL-YEN 846 (1204)
T ss_dssp HHHHHHHHHHHHHH-HHHTTSHHHHTTSCGGGTTTTSCCHHHHHHHTCCCCCCCCTTCCCSCCCHHHHHHHHHHHH-HHH
T ss_pred HHHHhHHHHHHHHH-HHHhcCcHhhhhcCHHHHHHHhccHHHHHHhcCCCcccccccccCCCcCcHHHHHHHHHHH-HHH
Confidence 99999999999984 54 6789999888 6666665442 11111 22233445544444433 778
Q ss_pred hHHHHHHHHHHHhcC
Q 002370 744 CYIRTASVVIEEFGH 758 (930)
Q Consensus 744 ~~L~l~~~li~~fg~ 758 (930)
||+++.+.. ..+|.
T Consensus 847 ~y~~lg~~~-~~l~~ 860 (1204)
T 3a6p_A 847 CFHILGKAG-PSMQQ 860 (1204)
T ss_dssp HHHHHHHHH-HHHCT
T ss_pred HHHHHHHHh-hcccc
Confidence 887766653 33444
No 8
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=100.00 E-value=2.9e-32 Score=342.08 Aligned_cols=724 Identities=11% Similarity=0.053 Sum_probs=437.2
Q ss_pred HHHHHHHHHHHhccCCChHHHHHHHHHHHHhhcChHHHHHHHHhhccCCCCCCccchhHHhhhHHhHHHhccCcC-----
Q 002370 5 LQIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGY----- 79 (930)
Q Consensus 5 ~~~~v~~av~~ly~~~d~~~~~~A~~~L~~fq~s~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~ki~~~~~----- 79 (930)
..+++.+++.... ++|++.| |+++|++++++|+.|..+..++.+.. .+.++|++||.+||++|+++|.
T Consensus 3 d~~~l~~~L~~~~-spd~~~r--Ae~~L~~~~~~p~~~~~L~~il~~~~----~~~~vR~~A~i~lkn~i~~~w~~~~~~ 75 (960)
T 1wa5_C 3 DLETVAKFLAESV-IASTAKT--SERNLRQLETQDGFGLTLLHVIASTN----LPLSTRLAGALFFKNFIKRKWVDENGN 75 (960)
T ss_dssp HHHHHHHHHHHTT-SGGGHHH--HHHHHHHHHTSTTHHHHHHHHHHCTT----SCHHHHHHHHHHHHHHHHHHSBCSSSC
T ss_pred cHHHHHHHHHHhc-CCCHHHH--HHHHHHHhhcCCCHHHHHHHHHhcCC----CCHHHHHHHHHHHHHHHHhcCCCcccC
Confidence 4568889998854 6677666 99999999999999999999997543 3579999999999999999998
Q ss_pred -CCChHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhc--ccCchHHHHHHHhhcccCCCchhHHHHHHHhhh
Q 002370 80 -YLQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRAV--EHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVL 156 (930)
Q Consensus 80 -~l~~e~~~~lr~~Ll~~l~~~~~~~~~v~~kL~~~La~l~~~~~--~W~~~i~~li~~~~~~~~~~~~~~~~L~iL~~l 156 (930)
.+|++.+..||+.|++.+.. .++.||+|+|.+++.++.+.. .||++++++++.++++ ++......|.+|..+
T Consensus 76 ~~l~~~~k~~ik~~ll~~l~~---~~~~ir~~l~~~ia~ia~~d~p~~Wp~ll~~L~~~l~s~--~~~~~~~aL~~l~~i 150 (960)
T 1wa5_C 76 HLLPANNVELIKKEIVPLMIS---LPNNLQVQIGEAISSIADSDFPDRWPTLLSDLASRLSND--DMVTNKGVLTVAHSI 150 (960)
T ss_dssp BSSCHHHHHHHHHHHHHHHHH---SCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHTTCCSS--CTTHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHhhCccchhHHHHHHHHHhCCC--CHHHHHHHHHHHHHH
Confidence 79999999999999999985 458999999999999998854 6999999999998763 455677888888888
Q ss_pred hcccccccccccCCCHHHHHHHHHHHHhhhhHHHHHHHHHHhhccCCCCCcc----hhhhHHHHHHHHHHHHHhcccccc
Q 002370 157 PEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQ----LHDRNRKILRCLLSWVRAGCFTEI 232 (930)
Q Consensus 157 ~EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~----~~~~~~~~l~c~~sWi~~~~~~~~ 232 (930)
.++.. ..- .++..+.++..-+....+.+++++....+...+.+.+.. ...+...+++++.+-..+ .+
T Consensus 151 ~~~~~---~~~--~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~----~~ 221 (960)
T 1wa5_C 151 FKRWR---PLF--RSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQ----DI 221 (960)
T ss_dssp HGGGT---TSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSS----CC
T ss_pred HHHHH---Hhh--cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhc----cc
Confidence 87652 110 133445555555666777777776554222111100000 012223345555432211 11
Q ss_pred CcchhcccchHHHHHHhcCCCCcHHHHHHHHHHHHhccCChhHHHHhhhhhhHHhhhchhhccCc----HhHHhhHHHHH
Q 002370 233 SQGSLAAHPLLNFVFNSLQVQSSFDVAIEVLVELVGRHEGLPQALLCRVPFLKELLLLPALTDGD----EKVIGGLACLM 308 (930)
Q Consensus 233 ~~~~i~~~~ll~~l~~~L~~~~~~~~a~~~l~ei~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~d----~d~~~~l~~l~ 308 (930)
|.. + ... +..-+..+..++.... +... ..-.+++ ....+.+++.+
T Consensus 222 ~~~-~-~~~--------------~~~~~~~~~~~l~~~~--------------p~~~-~d~d~~~~~~~~~vk~~~~~~l 270 (960)
T 1wa5_C 222 PEF-F-EDN--------------IQVGMGIFHKYLSYSN--------------PLLE-DPDETEHASVLIKVKSSIQELV 270 (960)
T ss_dssp CHH-H-HHT--------------HHHHHHHHHHHHSCCS--------------CCCC-------CCCHHHHHHHHHHHHH
T ss_pred hHH-H-HHH--------------HHHHHHHHHHHHcCCC--------------Cccc-CCcccccccHHHHHHHHHHHHH
Confidence 110 0 000 0000011111111000 0000 0000000 12345778888
Q ss_pred HHHHHhhhHHHHhcChhHHHHHHHHHhccc---CCCCCchhhhhcHHHHHHHHHHhhccchhhhhhhhhhhhhcH--HHH
Q 002370 309 SEIGQAAPSLIVEASPEALALADALLSCVA---FPSEDWEIADSTLQFWSTLASYILGLDASIAKNKKHVEDMFF--SVF 383 (930)
Q Consensus 309 ~~~~e~~~~~l~~~~~~~~~ll~~ll~~~~---~p~~d~~v~~~~~~fW~~l~~~l~~~~~~~~~~~~~~~~~~~--~~~ 383 (930)
+.+.+.+...+.. ....+++.++.... ....++++...+++||..+.+. + .....++ +++
T Consensus 271 ~~l~~~~~~~f~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~----~--------~~~~~~~~~~~l 335 (960)
T 1wa5_C 271 QLYTTRYEDVFGP---MINEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRI----P--------KYFEIFNNESAM 335 (960)
T ss_dssp HHHHHHCHHHHHH---HHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTS----H--------HHHGGGCSHHHH
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCc----H--------hHHHHHcCchHH
Confidence 8888888776643 33345555555432 1112456888999999987542 1 1233454 899
Q ss_pred HHHH-HHHHHHhccCCCCCCCCCCCC---------CCchHHHHHHHHHHHHHHHHHhcCchHHHHHHHHh----hhc-CC
Q 002370 384 SALL-DALLLRAQVDESSFNDDGMVD---------LPDGLVQFRMNLVELLVDICQLLRSATFIQKVFFG----SWG-SA 448 (930)
Q Consensus 384 ~~Ll-~~l~~k~~~p~~~~~~~~~~d---------~~d~f~~~R~~~~d~l~~~~~~l~~~~~l~~~~~~----~~~-~~ 448 (930)
.+++ .+++..|.|++++.. .|+.| |.+++...|+..++++..++...| +.++..++.. +.. ..
T Consensus 336 ~~li~~~i~~~m~~~~~d~e-~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~-~~v~~~~l~~i~~~l~~~~~ 413 (960)
T 1wa5_C 336 NNITEQIILPNVTLREEDVE-LFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNE-VLVTNIFLAHMKGFVDQYMS 413 (960)
T ss_dssp HHHHHHTHHHHHSCCGGGTT-TTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCH-HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhHHhcCCCHHHHH-HHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcc-hhHHHHHHHHHHHHHHHhcc
Confidence 9999 788999999765322 23222 134556778888899998888877 3344333322 211 01
Q ss_pred CCCCCchhhhHHHHHHHhhhhccc--c-CCC----ccchhHH-HHH-HHHhccCchhhhhhHHHHHHHHHHHHHHhhHHH
Q 002370 449 NVPIPWKEVETKLFALNVVSEVVL--Q-EGQ----AFDFSVI-MQL-VAVLSASRSEELKGFMHIVYRSLADVIGSYSKW 519 (930)
Q Consensus 449 ~~~~~W~~~Ea~L~~l~~iae~~~--~-~~~----~~~l~~i-~~~-l~~l~~~~~~~~~~~~~v~~~t~~~~ig~y~~w 519 (930)
.++.+|+..||++|++++++++.. + ... ...+..+ .+. +..+. .+.+. .+.+|.++ |+++|+|++|
T Consensus 414 ~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~-~~~~~---~p~vr~~a-~~~lg~~~~~ 488 (960)
T 1wa5_C 414 DPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLT-SNNIP---HIILRVDA-IKYIYTFRNQ 488 (960)
T ss_dssp ----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHH-CSSCS---CHHHHHHH-HHHHHHTGGG
T ss_pred CcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhc-CCCCC---CceehHHH-HHHHHHHHhh
Confidence 124579999999999999987531 1 110 0012222 232 23332 22000 02267766 6999999999
Q ss_pred HHhchhchHHHHHHHHHhccccc--hhHHHHHHHHHHHHH-----------hhcccCCCccHHHHHHHHHHHHhcC---C
Q 002370 520 ISAFQTNARPLLLFLAAGISEAV--SSNACASALRKICED-----------ASALIDEPSNLEILMWIGEALEKRH---L 583 (930)
Q Consensus 520 l~~~p~~L~~vl~~l~~~l~~p~--v~~~Aa~al~~lc~~-----------c~~~l~~p~~~~~l~~~~~~l~~~~---l 583 (930)
+ +|+++.++++.+++++.++. |+.+||.||.+||+. ++..+. |+..+.+..+...+.... .
T Consensus 489 ~--~~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~-p~l~~ll~~L~~ll~~~~~~~~ 565 (960)
T 1wa5_C 489 L--TKAQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDIS-NSTEILLKNLIALILKHGSSPE 565 (960)
T ss_dssp S--CHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTT-TTHHHHHHHHHHHHHTTCCCHH
T ss_pred C--CHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhh-hhHHHHHHHHHHHHHhccCCCC
Confidence 8 78999999999999998754 899999999999983 244554 544445555555544321 1
Q ss_pred ChhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCchhhHHHHHHhHHHHHhhhcccccc
Q 002370 584 PLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHL 663 (930)
Q Consensus 584 ~~~~~~~l~eai~~vi~~~p~~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~l~~i~~~l 663 (930)
+..+...++++++.++...+.+ ...++..++..++..+.+..+.. .++... ...+++++.+++..
T Consensus 566 ~~~~~e~l~~al~~vv~~~~~~--~~p~~~~l~~~L~~~l~~~~~~~------~~~~~~-------~~~~e~l~~l~~~~ 630 (960)
T 1wa5_C 566 KLAENEFLMRSIFRVLQTSEDS--IQPLFPQLLAQFIEIVTIMAKNP------SNPRFT-------HYTFESIGAILNYT 630 (960)
T ss_dssp HHTSCHHHHHHHHHHHHHHTTT--TGGGHHHHHHHHHHHHHHHTTSC------CCHHHH-------HHHHHHHHHHHHTS
T ss_pred cccccHHHHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHHHHHHhCC------CCcHHH-------HHHHHHHHHHHhcC
Confidence 1225678999999999887643 34567777777777777654322 121111 23566777666641
Q ss_pred cccCCCCCCCCchHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHH--HhhhhhCC
Q 002370 664 PVPLPTNPAGDDPIFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQHFVTLLPQVLDCLS--TNFVSFQN 741 (930)
Q Consensus 664 ~~~~~~~~~~~~p~~~~~~~i~~~l~~i~~~~~~~~~~v~e~~c~~~~~~i~~l~~~~~p~l~~l~~~l~--~~~~~~~~ 741 (930)
.+++...+.+.+||++..++++ .. .++.+.+..++...+... ..+.+.++.+++.+. ..+.....
T Consensus 631 ---------~~~~~~~~~~~~~p~~~~iL~~-~~--~~~~~~~~~i~~~l~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~ 697 (960)
T 1wa5_C 631 ---------QRQNLPLLVDSMMPTFLTVFSE-DI--QEFIPYVFQIIAFVVEQS-ATIPESIKPLAQPLLAPNVWELKGN 697 (960)
T ss_dssp ---------CGGGHHHHHHHHHHHHHHHHHT-TC--TTTHHHHHHHHHHHHHHC-SSCCTTTGGGHHHHTSGGGGCCTTT
T ss_pred ---------CcchHHHHHHHHHHHHHHHHHh-hh--HhhHHHHHHHHHHHHHhc-cCCCHHHHHHHHHHcCHHHhcCCCC
Confidence 1245777889999999999973 43 345666666666655544 344455555555555 44432211
Q ss_pred cchHHHHHHHHHHHhcCCCCccchHHHHHHHHhhhHHHHHhhcCCCCCCCCchHHHHHHHHHHHHhhhhHHHHhhchhch
Q 002370 742 HECYIRTASVVIEEFGHKDEYGPLFVTTFERFSQAASVRALNSSYICDQEPDLVEAYTNFASTFVRTSRKEVLAASGALL 821 (930)
Q Consensus 742 ~~~~L~l~~~li~~fg~~~~~~~~l~~l~~~l~~~~~~~~l~~~~~~~~~pD~~~~~f~l~~~~l~~~p~~~~~s~~~~l 821 (930)
.+....++...+...++ .+.+ +..++.. +..+.+. ..+| ...|.++..++.++|...+. +++
T Consensus 698 ~~~~~~~L~~~~~~~~~--~~~~-~~~~l~~------~~~~~~~----~~~~--~~a~~ll~~i~~~~~~~~~~---~yl 759 (960)
T 1wa5_C 698 IPAVTRLLKSFIKTDSS--IFPD-LVPVLGI------FQRLIAS----KAYE--VHGFDLLEHIMLLIDMNRLR---PYI 759 (960)
T ss_dssp HHHHHHHHHHHHHHHGG--GCSC-SHHHHHH------HHHHHTC----TTTH--HHHHHHHHHHHHHSCHHHHG---GGH
T ss_pred chhHHHHHHHHHHhChH--HHHH-HHHHHHH------HHHHhCC----Cccc--chHHHHHHHHHHHCCHHHHH---HHH
Confidence 11222333333333222 2222 2222221 1222211 1244 78999999999999988432 578
Q ss_pred HHHHHHHHHhhccCchhH-HHHHHHHHHHHH
Q 002370 822 EVSFQKAAICCTAMHRGA-ALAAMSYLSCFL 851 (930)
Q Consensus 822 ~~~l~~~l~~l~~~e~~~-~~a~~~fl~~li 851 (930)
+.++..++..++....+. .++.+.|+..+.
T Consensus 760 ~~i~~~l~~~l~~~~~~~~~~~~l~~~~~~~ 790 (960)
T 1wa5_C 760 KQIAVLLLQRLQNSKTERYVKKLTVFFGLIS 790 (960)
T ss_dssp HHHHHHHHHGGGSSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCcHhHHHHHHHHHHHHH
Confidence 999998888887665444 447777777665
No 9
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=100.00 E-value=5.1e-32 Score=336.56 Aligned_cols=703 Identities=13% Similarity=0.103 Sum_probs=462.7
Q ss_pred hHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhcChHHHHHHHHhhccCCCCCCccchhHHhhhHHhHHHhccCcCCCCh
Q 002370 4 DLQIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQS 83 (930)
Q Consensus 4 ~~~~~v~~av~~ly~~~d~~~~~~A~~~L~~fq~s~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~ki~~~~~~l~~ 83 (930)
+..+++.++++..+ ++|++.|++|+++|+++++.|+.|.++..++.... +.+.++|++||..|++.|+++|..+++
T Consensus 10 ~~~~~l~~~l~~~~-s~d~~~r~~Ae~~L~~~~~~p~~~~~l~~il~~~~---~~~~~vR~~a~~~Lkn~i~~~w~~~~~ 85 (852)
T 4fdd_A 10 QGLQQILQLLKESQ-SPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLK---SEDEPTRSLSGLILKNNVKAHFQNFPN 85 (852)
T ss_dssp HHHHHHHHHHHHHT-CSCHHHHHHHHHHHHHHTTSHHHHHHHHHHHHTCT---TSCHHHHHHHHHHHHHHTTTSGGGCCH
T ss_pred hhHHHHHHHHHHHh-CcCHHHHHHHHHHHHHHHhCCCHHHHHHHHHhccC---CCChHHHHHHHHHHHHHHHHccCCCCH
Confidence 34557777777766 67999999999999999999999999999998532 346799999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhc--ccCchHHHHHHHhhcccCCCchhHHHHHHHhhhhcccc
Q 002370 84 AAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRAV--EHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVI 161 (930)
Q Consensus 84 e~~~~lr~~Ll~~l~~~~~~~~~v~~kL~~~La~l~~~~~--~W~~~i~~li~~~~~~~~~~~~~~~~L~iL~~l~EE~~ 161 (930)
+.+..||+.+++.+. ..++.||++++.+++.++.+.. .||+.++.++..+.+. ++......+..|..+.++..
T Consensus 86 ~~~~~ik~~ll~~l~---~~~~~vr~~~a~~i~~ia~~~~~~~wp~ll~~L~~~l~~~--~~~~r~~al~~L~~i~~~~~ 160 (852)
T 4fdd_A 86 GVTDFIKSECLNNIG---DSSPLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSE--DYNTCEGAFGALQKICEDSA 160 (852)
T ss_dssp HHHHHHHHHHHTTTT---CSSHHHHHHHHHHHHHHHHHTTTTTCTTHHHHHHHHHSCS--SHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHhH
Confidence 999999999999864 4568899999999999998764 7999999999999763 34456778888888877663
Q ss_pred cccccccCCCHHHHHHHHHHHHhhhhHHHHHHHHHHhhccCCCCCcchhhhHHHHHHHHHHHHHhccccccCcchhcccc
Q 002370 162 DSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHP 241 (930)
Q Consensus 162 ~~~~~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~c~~sWi~~~~~~~~~~~~i~~~~ 241 (930)
.. + .+ ..+......++..+.+.+.. ++..++..+++|+..++... +. .
T Consensus 161 ~~------~---~~----~~~~~~~~~il~~l~~~l~~--------~~~~vR~~A~~aL~~~~~~~-----~~-~----- 208 (852)
T 4fdd_A 161 EI------L---DS----DVLDRPLNIMIPKFLQFFKH--------SSPKIRSHAVACVNQFIISR-----TQ-A----- 208 (852)
T ss_dssp TH------H---HH----CSSSSCHHHHHHHHTTTTTC--------SSHHHHHHHHHHHHTTTTTT-----CH-H-----
T ss_pred HH------h---ch----hhhcchHHHHHHHHHHHhcC--------CCHHHHHHHHHHHHHHHhcc-----cH-H-----
Confidence 11 0 00 00111234444444444432 34578899999998776521 10 0
Q ss_pred hHHHHHHhcCCCCcHHHHHHHHHHHHhccCChhHHHHhhhhhhHHhhhchhhccCcHhHHhhHHHHHHHHHHhhhHHHHh
Q 002370 242 LLNFVFNSLQVQSSFDVAIEVLVELVGRHEGLPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMSEIGQAAPSLIVE 321 (930)
Q Consensus 242 ll~~l~~~L~~~~~~~~a~~~l~ei~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~d~d~~~~l~~l~~~~~e~~~~~l~~ 321 (930)
+. .....+++.+. ....++|.+..+..++.+..+++.+...+..
T Consensus 209 ~~----------------------------~~~~~~l~~l~--------~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~ 252 (852)
T 4fdd_A 209 LM----------------------------LHIDSFIENLF--------ALAGDEEPEVRKNVCRALVMLLEVRMDRLLP 252 (852)
T ss_dssp HH----------------------------TSHHHHHHHHH--------HHHTCCCHHHHHHHHHHHHHHHHHCHHHHGG
T ss_pred HH----------------------------HHHHHHHHHHH--------HHcCCCCHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 00 00111122111 1234567777788888888888887776653
Q ss_pred cChhHHHHHHHHHhcccCCCCCchhhhhcHHHHHHHHHHhhccchhhhhhhhhhhhhcHHHHHHHHHHHHHHhccCCCC-
Q 002370 322 ASPEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESS- 400 (930)
Q Consensus 322 ~~~~~~~ll~~ll~~~~~p~~d~~v~~~~~~fW~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Ll~~l~~k~~~p~~~- 400 (930)
+...+++.++.+...+ +.++...+++||..+++.- .......|++.++++.++.+|.|++++
T Consensus 253 ---~l~~l~~~l~~~~~~~--~~~vr~~a~e~l~~l~~~~------------~~~~~~~~~~~~l~p~ll~~l~~~e~d~ 315 (852)
T 4fdd_A 253 ---HMHNIVEYMLQRTQDQ--DENVALEACEFWLTLAEQP------------ICKDVLVRHLPKLIPVLVNGMKYSDIDI 315 (852)
T ss_dssp ---GHHHHHHHHHHHHTCS--SHHHHHHHHHHHHHHTTST------------THHHHHTTTHHHHHHHHHHHTSCCHHHH
T ss_pred ---HHHHHHHHHHHHccCC--cHHHHHHHHHHHHHHhcch------------hHHHHHHHHHHHHHHHHHHHcCCcHhHH
Confidence 3457888999988886 6789999999999987631 112345677889999999999886531
Q ss_pred -C--CC-CCCCCCCch--HHHHHHHHHHHHHHHHHhcCchHHHHHHHHhhhcCCCCCCCchhhhHHHHHHHhhhhccccC
Q 002370 401 -F--ND-DGMVDLPDG--LVQFRMNLVELLVDICQLLRSATFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQE 474 (930)
Q Consensus 401 -~--~~-~~~~d~~d~--f~~~R~~~~d~l~~~~~~l~~~~~l~~~~~~~~~~~~~~~~W~~~Ea~L~~l~~iae~~~~~ 474 (930)
| .+ ++|++++|+ -...|+..++++..++...|.. ++..++..+.... .+.+|+..++++++++++++++.+.
T Consensus 316 ~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~-~~~~l~~~l~~~l-~~~~~~~R~aa~~alg~i~~~~~~~ 393 (852)
T 4fdd_A 316 ILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDE-LLPHILPLLKELL-FHHEWVVKESGILVLGAIAEGCMQG 393 (852)
T ss_dssp HHHHC------------CCCCHHHHHHHHHHHHHHHHGGG-GHHHHHHHHHHHH-TCSSHHHHHHHHHHHHHTTTTTHHH
T ss_pred HHhcCCcccccccccccccchHHHHHHHHHHHHHHhccHH-HHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHhcchHH
Confidence 1 01 011111111 1234777778888888777743 4444333322110 1357999999999999999988642
Q ss_pred CCccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHh--chhchHHHHHHHHHhccc--cchhHHHHHH
Q 002370 475 GQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISA--FQTNARPLLLFLAAGISE--AVSSNACASA 550 (930)
Q Consensus 475 ~~~~~l~~i~~~l~~l~~~~~~~~~~~~~v~~~t~~~~ig~y~~wl~~--~p~~L~~vl~~l~~~l~~--p~v~~~Aa~a 550 (930)
-. ..++.+++.+.....+++.. ||.++ ++++|+|++|+.. +..++..+++.++.++.+ +.++..|+.|
T Consensus 394 ~~-~~l~~~l~~l~~~l~d~~~~------Vr~~a-~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~a 465 (852)
T 4fdd_A 394 MI-PYLPELIPHLIQCLSDKKAL------VRSIT-CWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSA 465 (852)
T ss_dssp HG-GGHHHHHHHHHHHTTCSSHH------HHHHH-HHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHHHcCCCCHH------HHHHH-HHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 22 22566777666666666533 67755 6999999999975 467999999999999975 5699999999
Q ss_pred HHHHHHHhhcccCCCccHHHH-HHHHHHHHhcCCChhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHHHHhhhhc
Q 002370 551 LRKICEDASALIDEPSNLEIL-MWIGEALEKRHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDG 629 (930)
Q Consensus 551 l~~lc~~c~~~l~~p~~~~~l-~~~~~~l~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~~l~~ll~p~~~~l~~~~~~ 629 (930)
|.++|+.|+..+. | +.+.+ ..+...+... +......++++++.++..++..-....++..++.++++.+..+.+.
T Consensus 466 L~~l~~~~~~~l~-~-~l~~ll~~L~~~l~~~--~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d~ 541 (852)
T 4fdd_A 466 FATLEEEACTELV-P-YLAYILDTLVFAFSKY--QHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDE 541 (852)
T ss_dssp HHHHHHHHGGGGG-G-GHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHhhHhhH-h-HHHHHHHHHHHHHHHh--ChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHhcccc
Confidence 9999999998864 4 44444 4444444333 4556667899999998776554333567888888888876654432
Q ss_pred cCCCCCCCCchhhHHHHHHhHHHHHhhhcccccccccCCCCCCCCch-HHHHHHHHHHHHHHHHHh---------hh-cc
Q 002370 630 DNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDP-IFALLRVFWPMLEKLFRS---------EH-ME 698 (930)
Q Consensus 630 ~~~~~~~~~~~~~~~~l~~~~~~l~~l~~i~~~l~~~~~~~~~~~~p-~~~~~~~i~~~l~~i~~~---------~~-~~ 698 (930)
.. .. . ..+.+++.+.+.+...+ .| ...++..++..+...+.. .+ ..
T Consensus 542 ~~--------~~-----~---~~~~~l~~i~~~~g~~~-------~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 598 (852)
T 4fdd_A 542 DK--------DL-----F---PLLECLSSVATALQSGF-------LPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAP 598 (852)
T ss_dssp CT--------TH-----H---HHHHHHHHHHHHHGGGG-------HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCC
T ss_pred cH--------HH-----H---HHHHHHHHHHHHHhHhH-------HHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCC
Confidence 21 11 1 23455554444443211 12 112333344444443320 01 12
Q ss_pred chHHHHHHHHHHHHHHHHhhhhhHhhH--HHHHHHHHHhhhhhCC--cchHHHHHHHHHHHhcCCCCccchHHHHHHHHh
Q 002370 699 NGNLSTAACRALSLAIQSSGQHFVTLL--PQVLDCLSTNFVSFQN--HECYIRTASVVIEEFGHKDEYGPLFVTTFERFS 774 (930)
Q Consensus 699 ~~~v~e~~c~~~~~~i~~l~~~~~p~l--~~l~~~l~~~~~~~~~--~~~~L~l~~~li~~fg~~~~~~~~l~~l~~~l~ 774 (930)
+.++...+++++..+++.+|.++.+++ +.+++.+...+....+ ..+...+++.++..+|. .+.+.+..++..+.
T Consensus 599 d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~--~~~~~l~~~lp~l~ 676 (852)
T 4fdd_A 599 DKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQ--HVKPCIADFMPILG 676 (852)
T ss_dssp CTHHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGG--GTGGGHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHhHhHHHHhcCCcHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHH
Confidence 567888899999999999999998887 6677877776642101 12345677777777774 34455544333222
Q ss_pred hhHHHHHhhcCCCCCCCCchHHHHHHHHHHHHhhhhHHHHhhchhchHHHHHHHHHhhccC--chhHHHHHHHHHHHHHh
Q 002370 775 QAASVRALNSSYICDQEPDLVEAYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICCTAM--HRGAALAAMSYLSCFLE 852 (930)
Q Consensus 775 ~~~~~~~l~~~~~~~~~pD~~~~~f~l~~~~l~~~p~~~~~s~~~~l~~~l~~~l~~l~~~--e~~~~~a~~~fl~~li~ 852 (930)
.. +. .++|++.......++.+.++.+..+. ++...+++..+.-+..+ .+.+...++..+..+..
T Consensus 677 ~~-----l~-----~~~~~v~~~a~~alg~i~~~~~~~~~----p~~~~il~~L~~~l~~~~~~~~~~~~a~~~igrl~~ 742 (852)
T 4fdd_A 677 TN-----LN-----PEFISVCNNATWAIGEISIQMGIEMQ----PYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGY 742 (852)
T ss_dssp HT-----CC-----TTSHHHHHHHHHHHHHHHHHHGGGGG----GGTHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHH
T ss_pred HH-----cC-----ccchHHHHHHHHHHHHHHHHhhHhHH----HHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHH
Confidence 21 21 34677888888888888777655432 45666666666555543 34556666665655554
Q ss_pred h
Q 002370 853 E 853 (930)
Q Consensus 853 ~ 853 (930)
.
T Consensus 743 ~ 743 (852)
T 4fdd_A 743 V 743 (852)
T ss_dssp H
T ss_pred h
Confidence 3
No 10
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=100.00 E-value=3.4e-29 Score=312.48 Aligned_cols=713 Identities=12% Similarity=0.115 Sum_probs=465.2
Q ss_pred HHHHHHHHHh-ccCCChHHHHHHHHHHHHhhcC--hHHHHHHHHhhccCCCCCCccchhHHhhhHHhHHHhccC------
Q 002370 7 IKVAQAVHVL-NHDTESCNRVAANQWLVQFQQT--DAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNE------ 77 (930)
Q Consensus 7 ~~v~~av~~l-y~~~d~~~~~~A~~~L~~fq~s--~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~ki~~~------ 77 (930)
.++.+++..+ + ++|++.|++|+++|++++++ |+.|..+.++|.... .+.++|+||+.+|+++|.++
T Consensus 4 ~~l~~~L~~~~~-s~d~~~r~~Ae~~L~~~~~~~~~~~~~~l~~il~~~~----~~~~vR~~A~~~lk~~i~~~w~~~~~ 78 (861)
T 2bpt_A 4 AEFAQLLENSIL-SPDQNIRLTSETQLKKLSNDNFLQFAGLSSQVLIDEN----TKLEGRILAALTLKNELVSKDSVKTQ 78 (861)
T ss_dssp HHHHHHHHHHHH-CSSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTCTT----SCHHHHHHHHHHHHTTTCCSSHHHHH
T ss_pred HHHHHHHHHccc-CcCHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhCCC----CChHHHHHHHHHHHhhccCcChHHHH
Confidence 3899999997 6 67999999999999999987 999999999997642 35799999999999999876
Q ss_pred -----cCC-CChHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh-c--ccCchHHHHHHHhhcccCCCchhHH
Q 002370 78 -----GYY-LQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRA-V--EHGKPIEKLFYSLQNLQSQDNGNMA 148 (930)
Q Consensus 78 -----~~~-l~~e~~~~lr~~Ll~~l~~~~~~~~~v~~kL~~~La~l~~~~-~--~W~~~i~~li~~~~~~~~~~~~~~~ 148 (930)
|.. ++++.+..||+.|++.+. ..++.+|++++.+++.++.+. + .||+.++.++..+.+.. ++.....
T Consensus 79 ~~~~~~~~~l~~~~~~~ik~~ll~~l~---~~~~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~~-~~~~r~~ 154 (861)
T 2bpt_A 79 QFAQRWITQVSPEAKNQIKTNALTALV---SIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQ-PENVKRA 154 (861)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHT---CSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTS-CHHHHHH
T ss_pred HHHHhHhhhCCHHHHHHHHHHHHHHHC---CCchHHHHHHHHHHHHHHHhhCcccccHHHHHHHHHHHhcCC-CHHHHHH
Confidence 565 999999999999999875 456788999999999999875 3 69999999999987621 3445678
Q ss_pred HHHHHhhhhcccccccccccCCCHHHHHHHHHHHHhhhhHHHHHHHHHHhhccCCCCCcchhhhHHHHHHHHHHHHHhcc
Q 002370 149 VLEMLTVLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGC 228 (930)
Q Consensus 149 ~L~iL~~l~EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~c~~sWi~~~~ 228 (930)
.+.+|..+++++... . | .+....+.++..+...+.... ++..++..+++|+.+|+.+.
T Consensus 155 al~~l~~l~~~~~~~------~----~-----~~~~~~~~ll~~l~~~l~~~~------~~~~vr~~al~~l~~~~~~~- 212 (861)
T 2bpt_A 155 SLLALGYMCESADPQ------S----Q-----ALVSSSNNILIAIVQGAQSTE------TSKAVRLAALNALADSLIFI- 212 (861)
T ss_dssp HHHHHHHHHHTSSTT------S----S-----TTGGGHHHHHHHHHHHHSTTC------CCHHHHHHHHHHHHHHGGGC-
T ss_pred HHHHHHHHHHcCChh------h----h-----HHHHHHHHHHHHHHHhhcCCC------CCHHHHHHHHHHHHHHHHHH-
Confidence 899999999887421 0 0 123345667777766665421 14579999999999998753
Q ss_pred ccccCcchhc----ccchHHHHHHhcCCCCcHHHHHHHHHHHHhccCChhHHHHhhhhhhHHhhhchhhccCcHhHHhhH
Q 002370 229 FTEISQGSLA----AHPLLNFVFNSLQVQSSFDVAIEVLVELVGRHEGLPQALLCRVPFLKELLLLPALTDGDEKVIGGL 304 (930)
Q Consensus 229 ~~~~~~~~i~----~~~ll~~l~~~L~~~~~~~~a~~~l~ei~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~d~d~~~~l 304 (930)
... +. ...+++.+... ..+++.+..+..
T Consensus 213 ----~~~-~~~~~~~~~ll~~l~~~-------------------------------------------~~~~~~~~r~~a 244 (861)
T 2bpt_A 213 ----KNN-MEREGERNYLMQVVCEA-------------------------------------------TQAEDIEVQAAA 244 (861)
T ss_dssp ----HHH-HTSHHHHHHHHHHHHHH-------------------------------------------HTCSCHHHHHHH
T ss_pred ----HHH-ccChhHHHHHHHHHHHH-------------------------------------------hcCCCHHHHHHH
Confidence 111 00 01122222222 223444455555
Q ss_pred HHHHHHHHHhhhHHHHhcChhHH-HHHHHHHhcccCCCCCchhhhhcHHHHHHHHHHhhccchhhhh--hhhh-hhhhcH
Q 002370 305 ACLMSEIGQAAPSLIVEASPEAL-ALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAK--NKKH-VEDMFF 380 (930)
Q Consensus 305 ~~l~~~~~e~~~~~l~~~~~~~~-~ll~~ll~~~~~p~~d~~v~~~~~~fW~~l~~~l~~~~~~~~~--~~~~-~~~~~~ 380 (930)
++.+..+++.+...+. +... .++++++.....+ +.++...+++||..+.+........... ..+. .....+
T Consensus 245 ~~~l~~l~~~~~~~~~---~~l~~~l~~~~~~~~~~~--~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (861)
T 2bpt_A 245 FGCLCKIMSKYYTFMK---PYMEQALYALTIATMKSP--NDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFAL 319 (861)
T ss_dssp HHHHHHHHHHHGGGCH---HHHHHTHHHHHHHHTTCS--SHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHH
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHcCC--cHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHH
Confidence 5666665555443222 1223 4566666666664 6789999999999988764211100000 0000 112346
Q ss_pred HHHHHHHHHHHHHhccCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHhcCchHHHHHHHHhhhcCCCCCCCchhhhHH
Q 002370 381 SVFSALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSATFIQKVFFGSWGSANVPIPWKEVETK 460 (930)
Q Consensus 381 ~~~~~Ll~~l~~k~~~p~~~~~~~~~~d~~d~f~~~R~~~~d~l~~~~~~l~~~~~l~~~~~~~~~~~~~~~~W~~~Ea~ 460 (930)
+++..+++.++.++..++++ ++++++ ..|+...+++..++..+|.. ++..++..+.... .+.+|+..|++
T Consensus 320 ~~~~~il~~ll~~l~~~~~d-------~~d~~~-~~r~~a~~~L~~l~~~~~~~-~~~~l~~~l~~~l-~~~~~~~r~~a 389 (861)
T 2bpt_A 320 SSIKDVVPNLLNLLTRQNED-------PEDDDW-NVSMSAGACLQLFAQNCGNH-ILEPVLEFVEQNI-TADNWRNREAA 389 (861)
T ss_dssp HHHHHHHHHHHHHTTCCCCC--------CCCCC-HHHHHHHHHHHHHHHHHGGG-GHHHHHHHHHHHT-TCSSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccc-------cccccC-cHHHHHHHHHHHHHHHccHh-HHHHHHHHHHHHc-CCCChhHHHHH
Confidence 67888999999998865431 112233 56778888898888877743 3444333322111 23569999999
Q ss_pred HHHHHhhhhccccCCCccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHhc---hhchHHHHHHHHHh
Q 002370 461 LFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAF---QTNARPLLLFLAAG 537 (930)
Q Consensus 461 L~~l~~iae~~~~~~~~~~l~~i~~~l~~l~~~~~~~~~~~~~v~~~t~~~~ig~y~~wl~~~---p~~L~~vl~~l~~~ 537 (930)
+++++++++++..+.-...++.+++.+.....+++.. +|.++ ++++|+|++|+..+ +.+++.+++.++.+
T Consensus 390 ~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~------vr~~a-~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~ 462 (861)
T 2bpt_A 390 VMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQ------VKETT-AWCIGRIADSVAESIDPQQHLPGVVQACLIG 462 (861)
T ss_dssp HHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHH------HHHHH-HHHHHHHHHHHGGGSCTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCcHH------HHHHH-HHHHHHHHHHhhhhcCCHHHHHHHHHHHHHH
Confidence 9999999987642111011345555554445555432 56655 69999999999764 67899999999999
Q ss_pred ccc-cchhHHHHHHHHHHHHHhh----cccCCCccHHH-HHHHHHHHHhcCCChhhHHHHHHHHHHHHccCCchHHHHHH
Q 002370 538 ISE-AVSSNACASALRKICEDAS----ALIDEPSNLEI-LMWIGEALEKRHLPLEDEEEVVGAISLILGSVSNKELKNNL 611 (930)
Q Consensus 538 l~~-p~v~~~Aa~al~~lc~~c~----~~l~~p~~~~~-l~~~~~~l~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~~ 611 (930)
+.+ |+++..|+.++..+|+.|+ ..+. | +.+. +..+...+.....+...|..++++++.++...+.+ ...+
T Consensus 463 l~~~~~v~~~a~~al~~l~~~~~~~~~~~l~-~-~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~--~~~~ 538 (861)
T 2bpt_A 463 LQDHPKVATNCSWTIINLVEQLAEATPSPIY-N-FYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDT--VAET 538 (861)
T ss_dssp HTSCHHHHHHHHHHHHHHHHHHSSSSSCGGG-G-GHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGG--GHHH
T ss_pred hccChHHHHHHHHHHHHHHHhcccccchhhH-H-HHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchh--hHHH
Confidence 986 5689999999999999997 3343 3 4444 44444444433334567889999999999998864 3577
Q ss_pred HHHHHHHHHHHHHhhhhccCCCCCCCCchhhHHHHHHhHHHHHhhhcccccccccCCCCCCCCchHHHHHHHHHHHHHHH
Q 002370 612 LARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKL 691 (930)
Q Consensus 612 l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~l~~i~~~l~~~~~~~~~~~~p~~~~~~~i~~~l~~i 691 (930)
+..++.+++..+...+..........+...... +. ...+..++.+.+.+... +.++...++|.+..+
T Consensus 539 ~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~-~~--~~~~~~l~~l~~~~~~~----------~~~~~~~l~~~l~~~ 605 (861)
T 2bpt_A 539 SASISTFVMDKLGQTMSVDENQLTLEDAQSLQE-LQ--SNILTVLAAVIRKSPSS----------VEPVADMLMGLFFRL 605 (861)
T ss_dssp HHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHH-HH--HHHHHHHHHHHHHCGGG----------TGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhcccCChhhHHHHHH-HH--HHHHHHHHHHHHHhhhh----------hHHHHHHHHHHHHHH
Confidence 888999999888876321100000000000101 11 12344455555544321 223456677777777
Q ss_pred HHhhhccchHHHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhhhhhCC--cchHHHHHHHHHHHhcCCCCccchHHHH
Q 002370 692 FRSEHMENGNLSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTNFVSFQN--HECYIRTASVVIEEFGHKDEYGPLFVTT 769 (930)
Q Consensus 692 ~~~~~~~~~~v~e~~c~~~~~~i~~l~~~~~p~l~~l~~~l~~~~~~~~~--~~~~L~l~~~li~~fg~~~~~~~~l~~l 769 (930)
+.. ...+ .+.+.++.++..+...+|.++.|+++.+++.+...+....+ ....+.+++.++...|. .+.+.+..+
T Consensus 606 l~~-~~~~-~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~--~~~~~~~~l 681 (861)
T 2bpt_A 606 LEK-KDSA-FIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEE--DFRRYSDAM 681 (861)
T ss_dssp HHS-TTGG-GTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGG--GGHHHHHHH
T ss_pred Hcc-CCCC-cHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhch--hccchHHHH
Confidence 752 2222 78899999999999999999999999998888876642211 22356677777777774 333344333
Q ss_pred HHHHhhhHHHHHhhcCCCCCCCCchHHHHHHHHHHHHhhhhHHHHhhchhchHHHHHHHHHhhccCc-----------hh
Q 002370 770 FERFSQAASVRALNSSYICDQEPDLVEAYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICCTAMH-----------RG 838 (930)
Q Consensus 770 ~~~l~~~~~~~~l~~~~~~~~~pD~~~~~f~l~~~~l~~~p~~~~~s~~~~l~~~l~~~l~~l~~~e-----------~~ 838 (930)
+..+ +..+.. ...++++....+..+..+.++.+..|.+ +++.++...+.++.... ..
T Consensus 682 ~~~l-----~~~l~~---~~~~~~vr~~~~~~l~~l~~~~~~~~~~----~l~~~l~~l~~~~~~~~~~~d~d~~~~~~~ 749 (861)
T 2bpt_A 682 MNVL-----AQMISN---PNARRELKPAVLSVFGDIASNIGADFIP----YLNDIMALCVAAQNTKPENGTLEALDYQIK 749 (861)
T ss_dssp HHHH-----HHHHHC---TTCCTTHHHHHHHHHHHHHHHHGGGGHH----HHHHHHHHHHHHHTCCCSSSSHHHHHHHHH
T ss_pred HHHH-----HHHhCC---ccccHhhhHHHHHHHHHHHHHhhhhHHH----HHHHHHHHHHHHHhcCCCCCChHHHHHHHH
Confidence 3322 223332 1246899999999999999998876553 45666666665555321 22
Q ss_pred HHHHHHHHHHHHHhh
Q 002370 839 AALAAMSYLSCFLEE 853 (930)
Q Consensus 839 ~~~a~~~fl~~li~~ 853 (930)
+..++++.+..++..
T Consensus 750 vr~~~l~~~~~i~~~ 764 (861)
T 2bpt_A 750 VLEAVLDAYVGIVAG 764 (861)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 346777777777744
No 11
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.96 E-value=5e-25 Score=275.37 Aligned_cols=712 Identities=12% Similarity=0.088 Sum_probs=452.7
Q ss_pred HHHHHHHhccCCChHHHHHHHHHHHHhhcC--hHHHHHHHHhhccCCCCCCccchhHHhhhHHhHHHhc-----------
Q 002370 9 VAQAVHVLNHDTESCNRVAANQWLVQFQQT--DAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQ----------- 75 (930)
Q Consensus 9 v~~av~~ly~~~d~~~~~~A~~~L~~fq~s--~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~ki~----------- 75 (930)
+.++++.+. ++|++.|++|+++|++++++ |+.|..+..+|.+.+ .+..+|.+|+.+|++++.
T Consensus 3 l~~~L~~~~-s~d~~~r~~A~~~L~~~~~~~~~~~~~~L~~~l~~~~----~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~ 77 (876)
T 1qgr_A 3 LITILEKTV-SPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPG----NSQVARVAAGLQIKNSLTSKDPDIKAQYQ 77 (876)
T ss_dssp HHHHHHGGG-CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT----SCHHHHHHHHHHHHHHHCCSSHHHHHHHH
T ss_pred HHHHHHHhc-CCCHHHHHHHHHHHHHHHhcChhhHHHHHHHHHhCCC----CCHHHHHHHHHHHHHhccccchHhHHHHH
Confidence 667887776 67999999999999999988 999999999997642 357999999999999985
Q ss_pred cCcCCCChHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhc---ccCchHHHHHHHhhcccCCCchhHHHHHH
Q 002370 76 NEGYYLQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRAV---EHGKPIEKLFYSLQNLQSQDNGNMAVLEM 152 (930)
Q Consensus 76 ~~~~~l~~e~~~~lr~~Ll~~l~~~~~~~~~v~~kL~~~La~l~~~~~---~W~~~i~~li~~~~~~~~~~~~~~~~L~i 152 (930)
+.|..++++.+..||+.|++.+.. .+..+ ++++.+++.++.... .||+.++.++..+.+...++......+..
T Consensus 78 ~~w~~l~~~~~~~ik~~ll~~l~~---~~~~~-~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~~~r~~al~~ 153 (876)
T 1qgr_A 78 QRWLAIDANARREVKNYVLHTLGT---ETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEA 153 (876)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHTTT---CCSSS-CHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHH
T ss_pred hhhccCCHHHHHHHHHHHHHHhCC---CcHHH-HHHHHHHHHHHHhhCcccccHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 458999999999999999998753 33446 999999999988753 69999999999987631023456778899
Q ss_pred HhhhhcccccccccccCCCHHHHHHHHHHHHhhhhHHHHHHHHHHhhccCCCCCcchhhhHHHHHHHHHHHHHhcccccc
Q 002370 153 LTVLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEI 232 (930)
Q Consensus 153 L~~l~EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~c~~sWi~~~~~~~~ 232 (930)
|..+++++.. +.+....+.++..+.+.+.... ++..++..+++|+..|+.+.
T Consensus 154 l~~l~~~~~~-----------------~~~~~~~~~ll~~l~~~l~~~~------~~~~vr~~a~~~l~~~~~~~----- 205 (876)
T 1qgr_A 154 IGYICQDIDP-----------------EQLQDKSNEILTAIIQGMRKEE------PSNNVKLAATNALLNSLEFT----- 205 (876)
T ss_dssp HHHHHHHSCH-----------------HHHGGGHHHHHHHHHHHHSTTC------SCHHHHHHHHHHHHHHGGGC-----
T ss_pred HHHHHHhcCH-----------------hhHHhHHHHHHHHHHHhhcCCC------CCHHHHHHHHHHHHHHHHHH-----
Confidence 9998887521 1134567777887777766431 13568999999999998742
Q ss_pred Ccchhcc----cchHHHHHHhcCCCCcHHHHHHHHHHHHhccCChhHHHHhhhhhhHHhhhchhhccCcHhHHhhHHHHH
Q 002370 233 SQGSLAA----HPLLNFVFNSLQVQSSFDVAIEVLVELVGRHEGLPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLM 308 (930)
Q Consensus 233 ~~~~i~~----~~ll~~l~~~L~~~~~~~~a~~~l~ei~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~d~d~~~~l~~l~ 308 (930)
+.. +.. ..+++.++.. ..++|.+.....++.+
T Consensus 206 ~~~-~~~~~~~~~il~~l~~~-------------------------------------------~~~~~~~vr~~a~~~l 241 (876)
T 1qgr_A 206 KAN-FDKESERHFIMQVVCEA-------------------------------------------TQCPDTRVRVAALQNL 241 (876)
T ss_dssp HHH-HTSHHHHHHHHHHHHHH-------------------------------------------TTCSSHHHHHHHHHHH
T ss_pred HHH-HHhHHHHHHHHHHHHHH-------------------------------------------cCCCCHHHHHHHHHHH
Confidence 111 100 0122222222 2233444555556666
Q ss_pred HHHHHhhhHHHHhcChhHH-HHHHHHHhcccCCCCCchhhhhcHHHHHHHHHHhhccc--hhh-hhhh----hhhhhhcH
Q 002370 309 SEIGQAAPSLIVEASPEAL-ALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLD--ASI-AKNK----KHVEDMFF 380 (930)
Q Consensus 309 ~~~~e~~~~~l~~~~~~~~-~ll~~ll~~~~~p~~d~~v~~~~~~fW~~l~~~l~~~~--~~~-~~~~----~~~~~~~~ 380 (930)
..+++.+...+.. ... .+++.++.+...+ +.++...+++||..+.+...... .+. .... .......+
T Consensus 242 ~~l~~~~~~~~~~---~~~~~l~~~~~~~~~~~--~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (876)
T 1qgr_A 242 VKIMSLYYQYMET---YMGPALFAITIEAMKSD--IDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAK 316 (876)
T ss_dssp HHHHHHSGGGCHH---HHTTTHHHHHHHHHTCS--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHH
T ss_pred HHHHHHhHHHHHH---HHHHHHHHHHHHHhcCC--chHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHH
Confidence 6666555433321 222 4667777776665 67789999999999987532110 000 0000 01112335
Q ss_pred HHHHHHHHHHHHHhccCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHhcCchHHHHHHHHhhhcCCCCCCCchhhhHH
Q 002370 381 SVFSALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSATFIQKVFFGSWGSANVPIPWKEVETK 460 (930)
Q Consensus 381 ~~~~~Ll~~l~~k~~~p~~~~~~~~~~d~~d~f~~~R~~~~d~l~~~~~~l~~~~~l~~~~~~~~~~~~~~~~W~~~Ea~ 460 (930)
+.+.+++..++..+...+++ . +++++ ..|+...+++..++...|.. ++..++..+... ..+.+|+..+++
T Consensus 317 ~~~~~ll~~ll~~l~~~~~d----~---~~~~~-~~r~~a~~~l~~l~~~~~~~-~~~~~l~~l~~~-l~~~~~~~r~~a 386 (876)
T 1qgr_A 317 GALQYLVPILTQTLTKQDEN----D---DDDDW-NPCKAAGVCLMLLATCCEDD-IVPHVLPFIKEH-IKNPDWRYRDAA 386 (876)
T ss_dssp HHHHHHHHHHHHHTTCCCSS----C---CTTCC-CHHHHHHHHHHHHHHHHGGG-GHHHHHHHHHHH-TTCSSHHHHHHH
T ss_pred HHHHHHhHHHHHHhhccccc----c---ccccc-HHHHHHHHHHHHHHHHCcHh-hHHHHHHHHHHH-ccCCChHHHHHH
Confidence 56788888888888643221 1 11222 56777788888887777743 344444332211 123579999999
Q ss_pred HHHHHhhhhccccCCCccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHh---chhchHHHHHHHHHh
Q 002370 461 LFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISA---FQTNARPLLLFLAAG 537 (930)
Q Consensus 461 L~~l~~iae~~~~~~~~~~l~~i~~~l~~l~~~~~~~~~~~~~v~~~t~~~~ig~y~~wl~~---~p~~L~~vl~~l~~~ 537 (930)
+++++.+++++..+.-...++.+++.+.....+++.. +|.++ ++++|+|++++.. ++.+++.+++.++..
T Consensus 387 ~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~------vr~~a-~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~ 459 (876)
T 1qgr_A 387 VMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVV------VRDTA-AWTVGRICELLPEAAINDVYLAPLLQCLIEG 459 (876)
T ss_dssp HHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHH------HHHHH-HHHHHHHHHHCGGGTSSTTTHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHH------HHHHH-HHHHHHHHHhCchhcccHHHHHHHHHHHHHH
Confidence 9999999987752110011345555444444555432 56655 6999999999876 568999999999999
Q ss_pred ccc-cchhHHHHHHHHHHHHHhh--------------cccCCCccHHHHH-HHHHHHHhcCC-ChhhHHHHHHHHHHHHc
Q 002370 538 ISE-AVSSNACASALRKICEDAS--------------ALIDEPSNLEILM-WIGEALEKRHL-PLEDEEEVVGAISLILG 600 (930)
Q Consensus 538 l~~-p~v~~~Aa~al~~lc~~c~--------------~~l~~p~~~~~l~-~~~~~l~~~~l-~~~~~~~l~eai~~vi~ 600 (930)
+.+ +.++..|+.++..+|+.|+ ..+. | +.+.+. .+...+..... ....+..++++++.++.
T Consensus 460 l~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~-~-~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~ 537 (876)
T 1qgr_A 460 LSAEPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLS-S-SFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVK 537 (876)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSST-T-THHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHhhhccccccccccccchhhh-H-hHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHH
Confidence 987 4589999999999999987 1243 4 444433 33444332211 23556789999999999
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCchhhHHHHHHhHHHHHhhhcccccccccCCCCCCCCchHHHH
Q 002370 601 SVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFAL 680 (930)
Q Consensus 601 ~~p~~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~l~~i~~~l~~~~~~~~~~~~p~~~~ 680 (930)
..+.+ ...++..++.+++..+...+..........++..+..... ..+..++.+.+.+.. ..+.++
T Consensus 538 ~~~~~--~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~---~~~~~l~~l~~~~~~---------~~~~~~ 603 (876)
T 1qgr_A 538 NSAKD--CYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQS---LLCATLQNVLRKVQH---------QDALQI 603 (876)
T ss_dssp TCCST--THHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHH---HHHHHHHHHHTTSCH---------HHHHTT
T ss_pred HCchh--hHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHH---HHHHHHHHHHHHhCh---------hhhhHH
Confidence 98864 4568899999999988876432111000011111111001 123333444433320 112334
Q ss_pred HHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhhhhh-CC--cchHHHHHHHHHHHhc
Q 002370 681 LRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTNFVSF-QN--HECYIRTASVVIEEFG 757 (930)
Q Consensus 681 ~~~i~~~l~~i~~~~~~~~~~v~e~~c~~~~~~i~~l~~~~~p~l~~l~~~l~~~~~~~-~~--~~~~L~l~~~li~~fg 757 (930)
+..++|.+..++.. ..+...+.+.++.++..++..++..+.|+++.+++.+...+... .+ ....+.+++.++...|
T Consensus 604 ~~~l~~~l~~~l~~-~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~ 682 (876)
T 1qgr_A 604 SDVVMASLLRMFQS-TAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQ 682 (876)
T ss_dssp HHHHHHHHHHHC------CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHh-ccCCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHH
Confidence 56677777766642 21114688999999999999999989998888887777655432 11 1235667777777777
Q ss_pred CCCCccchHHHHHHHHhhhHHHHHhhcCCCCCCCCchHHHHHHHHHHHHhhhhHHHHhhchhchHHHHHHHHHhhccCc-
Q 002370 758 HKDEYGPLFVTTFERFSQAASVRALNSSYICDQEPDLVEAYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICCTAMH- 836 (930)
Q Consensus 758 ~~~~~~~~l~~l~~~l~~~~~~~~l~~~~~~~~~pD~~~~~f~l~~~~l~~~p~~~~~s~~~~l~~~l~~~l~~l~~~e- 836 (930)
. .+.+.+..++..+ +..+.+ .+.++++....+..++++....+..|. ++++.++.....++....
T Consensus 683 ~--~~~~~~~~i~~~l-----~~~l~~---~~~~~~~~~~~~~~l~~i~~~~g~~~~----~~l~~~~~~l~~~~~~~~~ 748 (876)
T 1qgr_A 683 S--NIIPFCDEVMQLL-----LENLGN---ENVHRSVKPQILSVFGDIALAIGGEFK----KYLEVVLNTLQQASQAQVD 748 (876)
T ss_dssp G--GGHHHHHHHHHHH-----HHHHTC---TTSCGGGHHHHHHHHHHHHHHHGGGGG----GGHHHHHHHHHHHHTCCCC
T ss_pred H--hhhhhHHHHHHHH-----HHHhCC---ccccHHhhHHHHHHHHHHHHHhchhHH----HHHHHHHHHHHHHHhccCC
Confidence 4 2333333333322 223332 124678999999999999998876644 356777777666665331
Q ss_pred ----------hhHHHHHHHHHHHHHhhh
Q 002370 837 ----------RGAALAAMSYLSCFLEEC 854 (930)
Q Consensus 837 ----------~~~~~a~~~fl~~li~~~ 854 (930)
.....++++.+..++...
T Consensus 749 ~~d~~~~~~~~~~r~~~~~~~~~i~~~~ 776 (876)
T 1qgr_A 749 KSDYDMVDYLNELRESCLEAYTGIVQGL 776 (876)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 134555667777666543
No 12
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.89 E-value=2.4e-21 Score=223.00 Aligned_cols=432 Identities=12% Similarity=0.062 Sum_probs=294.1
Q ss_pred HHHHHHHhccCCChHHHHHHHHHHHHhhc--ChHHHHHHHHhhccCCCCCCccchhHHhhhHHhHHHhccC---------
Q 002370 9 VAQAVHVLNHDTESCNRVAANQWLVQFQQ--TDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNE--------- 77 (930)
Q Consensus 9 v~~av~~ly~~~d~~~~~~A~~~L~~fq~--s~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~ki~~~--------- 77 (930)
+.+++..++ ++|++.|++|+++|+++++ .|+.|.....+|...+ .+.++|.+|+.+|++.+.++
T Consensus 3 l~~~L~~~~-s~d~~~r~~Ae~~L~~~~~~~~~~~~~~L~~il~~~~----~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~ 77 (462)
T 1ibr_B 3 LITILEKTV-SPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPG----NSQVARVAAGLQIKNSLTSKDPDIKAQYQ 77 (462)
T ss_dssp HHHHHHHTT-CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT----SCHHHHHHHHHHHHHHHCCSSHHHHHHHH
T ss_pred HHHHHHHhc-CCCHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHcCC----CChHHHHHHHHHHHHhccccchHHHHHHH
Confidence 667787776 6799999999999999998 5999999999998642 35799999999999999876
Q ss_pred --cCCCChHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh-c--ccCchHHHHHHHhhcccCCCchhHHHHHH
Q 002370 78 --GYYLQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRA-V--EHGKPIEKLFYSLQNLQSQDNGNMAVLEM 152 (930)
Q Consensus 78 --~~~l~~e~~~~lr~~Ll~~l~~~~~~~~~v~~kL~~~La~l~~~~-~--~W~~~i~~li~~~~~~~~~~~~~~~~L~i 152 (930)
|..++++.+..||+.|++.+.. .+..+ +++|.+++.++.+. + .|++.++.++..+++...++......+.+
T Consensus 78 ~~~~~l~~~~~~~ik~~ll~~l~~---~~~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~ 153 (462)
T 1ibr_B 78 QRWLAIDANARREVKNYVLQTLGT---ETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEA 153 (462)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHTTC---CCSSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHH
T ss_pred hhhhcCCHHHHHHHHHHHHHHhCC---CCchh-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCCCCHHHHHHHHHH
Confidence 5889999999999999998753 34456 99999999999885 3 69999999999997621033456789999
Q ss_pred HhhhhcccccccccccCCCHHHHHHHHHHHHhhhhHHHHHHHHHHhhccCCCCCcchhhhHHHHHHHHHHHHHhcccccc
Q 002370 153 LTVLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEI 232 (930)
Q Consensus 153 L~~l~EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~c~~sWi~~~~~~~~ 232 (930)
|..++++... . . +....+.++..+.+.+.... ++..++..+++|+.+|+.+.
T Consensus 154 l~~l~~~~~~-~-----~-----------~~~~~~~ll~~l~~~l~~~~------~~~~vr~~a~~~l~~~~~~~----- 205 (462)
T 1ibr_B 154 IGYICQDIDP-E-----Q-----------LQDKSNEILTAIIQGMRKEE------PSNNVKLAATNALLNSLEFT----- 205 (462)
T ss_dssp HHHHHHHSCG-G-----G-----------TGGGHHHHHHHHHHHHSTTC------CCHHHHHHHHHHHHHHTTTT-----
T ss_pred HHHHHHhCCc-h-----h-----------hHhHHHHHHHHHHHHhCCCC------CCHHHHHHHHHHHHHHHHHH-----
Confidence 9999988631 0 0 22345567777777776531 14578999999999998742
Q ss_pred CcchhcccchHHHHHHhcCCCCcHHHHHHHHHHHHhccCChhHHHHhhhhhhHHhhhchhhccCcHhHHhhHHHHHHHHH
Q 002370 233 SQGSLAAHPLLNFVFNSLQVQSSFDVAIEVLVELVGRHEGLPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMSEIG 312 (930)
Q Consensus 233 ~~~~i~~~~ll~~l~~~L~~~~~~~~a~~~l~ei~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~d~d~~~~l~~l~~~~~ 312 (930)
. +..... . +...+++.+ . ....+.|.+.....++.+..++
T Consensus 206 ~-~~~~~~-~------------------------------~~~~l~~~l---~-----~~~~~~~~~vr~~~~~~l~~l~ 245 (462)
T 1ibr_B 206 K-ANFDKE-S------------------------------ERHFIMQVV---C-----EATQCPDTRVRVAALQNLVKIM 245 (462)
T ss_dssp H-HHHTSH-H------------------------------HHHHHHHHH---H-----HHTTCSSHHHHHHHHHHHHHHH
T ss_pred H-Hhhhhh-H------------------------------HHHHHHHHH---H-----HhcCCCCHHHHHHHHHHHHHHH
Confidence 0 000000 0 000011111 1 1234556777778888888888
Q ss_pred HhhhHHHHhcChhHH-HHHHHHHhcccCCCCCchhhhhcHHHHHHHHHHhhccchhhh----hhh---hhhhhhcHHHHH
Q 002370 313 QAAPSLIVEASPEAL-ALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIA----KNK---KHVEDMFFSVFS 384 (930)
Q Consensus 313 e~~~~~l~~~~~~~~-~ll~~ll~~~~~p~~d~~v~~~~~~fW~~l~~~l~~~~~~~~----~~~---~~~~~~~~~~~~ 384 (930)
+.+...+... +. .+++.++.+.... +.++...+++||..+.+.......... ..+ ......+++++.
T Consensus 246 ~~~~~~~~~~---~~~~l~~~~~~~~~~~--~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (462)
T 1ibr_B 246 SLYYQYMETY---MGPALFAITIEAMKSD--IDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQ 320 (462)
T ss_dssp HHCGGGCTTT---TTTTHHHHHHHHHHCS--SHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHH
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHcCC--chHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhh
Confidence 8776544332 22 5666667666664 677899999999999876421100000 000 011223456678
Q ss_pred HHHHHHHHHhccCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHhcCchHHHHHHHHhhhcCCCCCCCchhhhHHHHHH
Q 002370 385 ALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSATFIQKVFFGSWGSANVPIPWKEVETKLFAL 464 (930)
Q Consensus 385 ~Ll~~l~~k~~~p~~~~~~~~~~d~~d~f~~~R~~~~d~l~~~~~~l~~~~~l~~~~~~~~~~~~~~~~W~~~Ea~L~~l 464 (930)
.+++.+++.+.-.+++ ++++++ ..|+...+++..++..+|. .++..++..+... ..+.+|+..+++++++
T Consensus 321 ~l~p~l~~~l~~~d~d-------~~~~~~-~~r~~a~~~L~~l~~~~~~-~~~~~~~~~l~~~-l~~~~~~~r~aal~~l 390 (462)
T 1ibr_B 321 YLVPILTQTLTKQDEN-------DDDDDW-NPCKAAGVCLMLLATCCED-DIVPHVLPFIKEH-IKNPDWRYRDAAVMAF 390 (462)
T ss_dssp HHHHHHHHHTTCCCSS-------CCTTCC-SHHHHHHHHHHHHHHHTTT-THHHHHHHHHHHH-TTCSSHHHHHHHHHHH
T ss_pred hccHHHHHHHHhcccc-------cccccc-hHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHH-hcCCChHHHHHHHHHH
Confidence 8888888877532211 011222 4678888999999888884 4455444433211 1245799999999999
Q ss_pred HhhhhccccCCCccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHh---chhchHHHHHHHHHhcc
Q 002370 465 NVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISA---FQTNARPLLLFLAAGIS 539 (930)
Q Consensus 465 ~~iae~~~~~~~~~~l~~i~~~l~~l~~~~~~~~~~~~~v~~~t~~~~ig~y~~wl~~---~p~~L~~vl~~l~~~l~ 539 (930)
+++++++..+.-...++.+++.+.....+++.. ||.++ ++++|+|++|+.. ++.|++++++.++.+|.
T Consensus 391 ~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~~~------Vr~~a-~~~l~~~~~~~~~~~~~~~~l~~ll~~Ll~~L~ 461 (462)
T 1ibr_B 391 GCILEGPEPSQLKPLVIQAMPTLIELMKDPSVV------VRDTA-AWTVGRICELLPEAAINDVYLAPLLQCLIEGLS 461 (462)
T ss_dssp HHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHH------HHHHH-HHHHHHHHHHGGGGCCSTTTHHHHHHHHHCC--
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHHHhcCCCHH------HHHHH-HHHHHHHHHhcccccccHHHHHHHHHHHHHHhc
Confidence 999998753211122567777776666666533 67756 6999999999987 56899999999987764
No 13
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.62 E-value=8.3e-11 Score=145.73 Aligned_cols=538 Identities=11% Similarity=0.058 Sum_probs=324.3
Q ss_pred hhhhHHHHHHHHHHHHHhccccccCcchhcccchHHHHHHhcCCC--CcHHHHHHHHHHHHhccCCh---------hHHH
Q 002370 209 LHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSLQVQ--SSFDVAIEVLVELVGRHEGL---------PQAL 277 (930)
Q Consensus 209 ~~~~~~~~l~c~~sWi~~~~~~~~~~~~i~~~~ll~~l~~~L~~~--~~~~~a~~~l~ei~~~~~~~---------~~~l 277 (930)
+..++..+..|+..-.... +.. .+..+++.+++.+.++ ..++.++.++..++....+. ...+
T Consensus 103 ~~~vr~~~a~~i~~ia~~~-----~~~--~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~i 175 (852)
T 4fdd_A 103 SPLIRATVGILITTIASKG-----ELQ--NWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIM 175 (852)
T ss_dssp SHHHHHHHHHHHHHHHHHT-----TTT--TCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHH
T ss_pred CHHHHHHHHHHHHHHHHhc-----Ccc--ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHH
Confidence 3467888888888777643 112 2567999999999865 45788999998888765432 2233
Q ss_pred HhhhhhhHHhhhchhhccCcHhHHhhHHHHHHHHHHhhhHHHHhcChhHHHHHHHHHhcccCCCCCchhhhhcHHHHHHH
Q 002370 278 LCRVPFLKELLLLPALTDGDEKVIGGLACLMSEIGQAAPSLIVEASPEALALADALLSCVAFPSEDWEIADSTLQFWSTL 357 (930)
Q Consensus 278 ~~~~~~l~~~~~~~~~~~~d~d~~~~l~~l~~~~~e~~~~~l~~~~~~~~~ll~~ll~~~~~p~~d~~v~~~~~~fW~~l 357 (930)
++.+.. .+.+.+.+.....++.+..+.......+.. ....+++.++.+.+.+ +.++...++..+..+
T Consensus 176 l~~l~~--------~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~---~~~~~l~~l~~~~~d~--~~~vr~~a~~~L~~l 242 (852)
T 4fdd_A 176 IPKFLQ--------FFKHSSPKIRSHAVACVNQFIISRTQALML---HIDSFIENLFALAGDE--EPEVRKNVCRALVML 242 (852)
T ss_dssp HHHHTT--------TTTCSSHHHHHHHHHHHHTTTTTTCHHHHT---SHHHHHHHHHHHHTCC--CHHHHHHHHHHHHHH
T ss_pred HHHHHH--------HhcCCCHHHHHHHHHHHHHHHhcccHHHHH---HHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHH
Confidence 333322 334455555444444444433222111111 2235777777777775 677888788777776
Q ss_pred HHHhhccchhhhhhhhhhhhhcHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHH------hc
Q 002370 358 ASYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQ------LL 431 (930)
Q Consensus 358 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~Ll~~l~~k~~~p~~~~~~~~~~d~~d~f~~~R~~~~d~l~~~~~------~l 431 (930)
.+.. ...+.+++..+++.++.-+.-+ + .+.|....+.+..++. .+
T Consensus 243 ~~~~--------------~~~~~~~l~~l~~~l~~~~~~~-------------~--~~vr~~a~e~l~~l~~~~~~~~~~ 293 (852)
T 4fdd_A 243 LEVR--------------MDRLLPHMHNIVEYMLQRTQDQ-------------D--ENVALEACEFWLTLAEQPICKDVL 293 (852)
T ss_dssp HHHC--------------HHHHGGGHHHHHHHHHHHHTCS-------------S--HHHHHHHHHHHHHHTTSTTHHHHH
T ss_pred HHhC--------------HHHHHHHHHHHHHHHHHHccCC-------------c--HHHHHHHHHHHHHHhcchhHHHHH
Confidence 6531 1234455666777666655311 1 2345555555554432 11
Q ss_pred Cc--hHHHHHHHHhhh----------cC---CCCC----CCchhhhHHHHHHHhhhhccccCCCccchhHHHHHHHHhcc
Q 002370 432 RS--ATFIQKVFFGSW----------GS---ANVP----IPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSA 492 (930)
Q Consensus 432 ~~--~~~l~~~~~~~~----------~~---~~~~----~~W~~~Ea~L~~l~~iae~~~~~~~~~~l~~i~~~l~~l~~ 492 (930)
.+ ...+..++..+. .. .... .+|.-..++.-+++.+++..++ . .++.+++.+.....
T Consensus 294 ~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~-~---~~~~l~~~l~~~l~ 369 (852)
T 4fdd_A 294 VRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRD-E---LLPHILPLLKELLF 369 (852)
T ss_dssp TTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGG-G---GHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccH-H---HHHHHHHHHHHHhc
Confidence 11 112333333221 11 0001 5699999999999999988753 2 25777777776655
Q ss_pred CchhhhhhHHHHHHHHHHHHHHhhHHHHHhc-hhchHHHHHHHHHhccccc--hhHHHHHHHHHHHHHhhcccCCCccHH
Q 002370 493 SRSEELKGFMHIVYRSLADVIGSYSKWISAF-QTNARPLLLFLAAGISEAV--SSNACASALRKICEDASALIDEPSNLE 569 (930)
Q Consensus 493 ~~~~~~~~~~~v~~~t~~~~ig~y~~wl~~~-p~~L~~vl~~l~~~l~~p~--v~~~Aa~al~~lc~~c~~~l~~p~~~~ 569 (930)
++..+ +|.++ +..+|+.++..... ..+++.+++.+++.+.++. |+..|+.++.++|+.+......++..+
T Consensus 370 ~~~~~------~R~aa-~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ 442 (852)
T 4fdd_A 370 HHEWV------VKESG-ILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKP 442 (852)
T ss_dssp CSSHH------HHHHH-HHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHH
T ss_pred CCCHH------HHHHH-HHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 55432 46655 58999988755432 2488999999999998754 999999999999998876433232333
Q ss_pred HHHHHHHHHHhcCCChhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCchhhHHHHHHh
Q 002370 570 ILMWIGEALEKRHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSA 649 (930)
Q Consensus 570 ~l~~~~~~l~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 649 (930)
.+..+...+... +...|.....+++.++...+.. ...++ .+++..+..+++... ... +
T Consensus 443 ll~~L~~~L~d~--~~~vr~~a~~aL~~l~~~~~~~--l~~~l----~~ll~~L~~~l~~~~-------~~~----~--- 500 (852)
T 4fdd_A 443 LMTELLKRILDS--NKRVQEAACSAFATLEEEACTE--LVPYL----AYILDTLVFAFSKYQ-------HKN----L--- 500 (852)
T ss_dssp HHHHHHHHHTCS--SHHHHHHHHHHHHHHHHHHGGG--GGGGH----HHHHHHHHHHHHHCC-------HHH----H---
T ss_pred HHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHhhHh--hHhHH----HHHHHHHHHHHHHhC-------hHH----H---
Confidence 344444444322 5678889999999988665432 23334 444455555554321 000 0
Q ss_pred HHHHHhhhcccccccccCCCCCCCCchHHHHHHHHHHHHHHHHHhhhc-cchHHHHHHHHHHHHHHHHhhhhhHhhHHHH
Q 002370 650 TRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFRSEHM-ENGNLSTAACRALSLAIQSSGQHFVTLLPQV 728 (930)
Q Consensus 650 ~~~l~~l~~i~~~l~~~~~~~~~~~~p~~~~~~~i~~~l~~i~~~~~~-~~~~v~e~~c~~~~~~i~~l~~~~~p~l~~l 728 (930)
...++.++.+........ . ...+++.++|.+..... ... .+.++ ..+++++..+...+|..+.|+++++
T Consensus 501 ~~~~~ai~~l~~~~~~~~------~--~~~~~~~l~p~l~~~~~-~l~d~~~~~-~~~~~~l~~i~~~~g~~~~~~~~~i 570 (852)
T 4fdd_A 501 LILYDAIGTLADSVGHHL------N--KPEYIQMLMPPLIQKWN-MLKDEDKDL-FPLLECLSSVATALQSGFLPYCEPV 570 (852)
T ss_dssp HHHHHHHHHHHHHHGGGG------C--CHHHHHHHHHHHHHHHH-HSCTTCTTH-HHHHHHHHHHHHHHGGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhh------c--cHHHHHHHHHHHHHHHH-hcccccHHH-HHHHHHHHHHHHHHhHhHHHHHHHH
Confidence 112344444444433211 0 12466788888887765 343 33444 5889999999999999999988887
Q ss_pred HHHHHHhhhhh---------------C----CcchHHHHHHHHHHHhcCCCCccchH--HHHHHHHhhhHHHHHhhcCCC
Q 002370 729 LDCLSTNFVSF---------------Q----NHECYIRTASVVIEEFGHKDEYGPLF--VTTFERFSQAASVRALNSSYI 787 (930)
Q Consensus 729 ~~~l~~~~~~~---------------~----~~~~~L~l~~~li~~fg~~~~~~~~l--~~l~~~l~~~~~~~~l~~~~~ 787 (930)
++.++..+..+ . ...+.+.+++.++..+|.+ +.+.+ ..++..+. ..+.
T Consensus 571 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~--~~~~~~~~~~~~~l~-----~~l~---- 639 (852)
T 4fdd_A 571 YQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGN--IEQLVARSNILTLMY-----QCMQ---- 639 (852)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGGG--GHHHHHTCCHHHHHH-----HHTT----
T ss_pred HHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHhHh--HHHHhcCCcHHHHHH-----HHhC----
Confidence 76554433211 0 1233567888888888853 22222 11222111 1121
Q ss_pred CCCCCchHHHHHHHHHHHHhhhhHHHHhhchhchHHHHHHHHHhhccCchhHHHHHHHHHHHHHhhh
Q 002370 788 CDQEPDLVEAYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICCTAMHRGAALAAMSYLSCFLEEC 854 (930)
Q Consensus 788 ~~~~pD~~~~~f~l~~~~l~~~p~~~~~s~~~~l~~~l~~~l~~l~~~e~~~~~a~~~fl~~li~~~ 854 (930)
+..|+++++.+.+++.+.+.++..+.+ +++.++...+..+...+..+.+.++..+..+....
T Consensus 640 -~~~~~vr~~a~~~l~~l~~~~~~~~~~----~l~~~lp~l~~~l~~~~~~v~~~a~~alg~i~~~~ 701 (852)
T 4fdd_A 640 -DKMPEVRQSSFALLGDLTKACFQHVKP----CIADFMPILGTNLNPEFISVCNNATWAIGEISIQM 701 (852)
T ss_dssp -CSSHHHHHHHHHHHHHHHHHCGGGTGG----GHHHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHH
T ss_pred -CCChhHHHHHHHHHHHHHHHhhHHHHH----HHHHHHHHHHHHcCccchHHHHHHHHHHHHHHHHh
Confidence 356899999999999999999876653 57778888888887778888888888888876554
No 14
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.58 E-value=7.5e-12 Score=161.47 Aligned_cols=672 Identities=11% Similarity=0.108 Sum_probs=371.2
Q ss_pred HHHHHHHHHHhccCCChHHHHHHHHHHHHhhcCh----------HHHHHHHHhhccCCCCCCccchhHHhhhHHhHHHhc
Q 002370 6 QIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTD----------AAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQ 75 (930)
Q Consensus 6 ~~~v~~av~~ly~~~d~~~~~~A~~~L~~fq~s~----------~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~ki~ 75 (930)
..++.+.++.+- ++|++.|.+|.+.|.+.-+.+ ..-......|.+ .+..+|..|+..|..-..
T Consensus 5 ~~~l~~lL~~l~-s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d------~~~~vR~~A~~~L~~l~~ 77 (1230)
T 1u6g_C 5 SYHISNLLEKMT-SSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLED------KNGEVQNLAVKCLGPLVS 77 (1230)
T ss_dssp CHHHHHHHHHTT-CSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTC------SSHHHHHHHHHHHHHHHT
T ss_pred HhHHHHHHHhcC-CCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcC------CCHHHHHHHHHHHHHHHH
Confidence 356788888865 789999999988887654332 222334444432 357999999999988775
Q ss_pred cCcCCCChHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhc-----------ccCchHHHHHHHhhcccCCCc
Q 002370 76 NEGYYLQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRAV-----------EHGKPIEKLFYSLQNLQSQDN 144 (930)
Q Consensus 76 ~~~~~l~~e~~~~lr~~Ll~~l~~~~~~~~~v~~kL~~~La~l~~~~~-----------~W~~~i~~li~~~~~~~~~~~ 144 (930)
. ++++....+++.|+..+. ..+..+|...+.+|+.++-... .|+..++.++..+... .+..
T Consensus 78 ~----~~~~~~~~i~~~Ll~~l~---d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~-~~~~ 149 (1230)
T 1u6g_C 78 K----VKEYQVETIVDTLCTNML---SDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQ-EDVS 149 (1230)
T ss_dssp T----SCHHHHHHHHHHHHHHTT---CSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCC-SCHH
T ss_pred h----CCHHHHHHHHHHHHHHhc---CCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCC-CchH
Confidence 3 566777788888877654 3455688889999998886654 2888899999888631 1334
Q ss_pred hhHHHHHHHhhhhcccccccccccCCCHHHHHHHHHHHHhhhhHHHHHHHHHHhhccCCCCCcchhhhHHHHHHHHHHHH
Q 002370 145 GNMAVLEMLTVLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWV 224 (930)
Q Consensus 145 ~~~~~L~iL~~l~EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~c~~sWi 224 (930)
.....++++..+.+.... . +. ...+.++..+...+.+ ++..++..+++|+.+.+
T Consensus 150 ~~~~al~~l~~~~~~~~~--~----l~------------~~~~~ll~~l~~~L~~--------~~~~vR~~a~~al~~l~ 203 (1230)
T 1u6g_C 150 VQLEALDIMADMLSRQGG--L----LV------------NFHPSILTCLLPQLTS--------PRLAVRKRTIIALGHLV 203 (1230)
T ss_dssp HHHHHHHHHHHHHHHTCS--S----CT------------TTHHHHHHHHGGGGGC--------SSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhHh--H----HH------------HHHHHHHHHHHHHHcC--------CcHHHHHHHHHHHHHHH
Confidence 556777777777765532 1 11 1234555555555543 23468889999998887
Q ss_pred HhccccccCcchhcccchHHHHHHhcCCCCcHHHHHHHHHHHHhccCChhHHHHhhhhhhHHhhhchhhccCcHhHHhhH
Q 002370 225 RAGCFTEISQGSLAAHPLLNFVFNSLQVQSSFDVAIEVLVELVGRHEGLPQALLCRVPFLKELLLLPALTDGDEKVIGGL 304 (930)
Q Consensus 225 ~~~~~~~~~~~~i~~~~ll~~l~~~L~~~~~~~~a~~~l~ei~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~d~d~~~~l 304 (930)
... +... ...+++.+++.|.++ .+.+.....
T Consensus 204 ~~~-----~~~~--~~~~l~~l~~~L~~~------------------------------------------~~~~~r~~a 234 (1230)
T 1u6g_C 204 MSC-----GNIV--FVDLIEHLLSELSKN------------------------------------------DSMSTTRTY 234 (1230)
T ss_dssp TTC-----------CTTHHHHHHHHHHHT------------------------------------------CSSCSCTTH
T ss_pred Hhc-----CHHH--HHHHHHHHHHHhccC------------------------------------------CchhHHHHH
Confidence 742 1111 122333333332211 001111222
Q ss_pred HHHHHHHHHhhhHHHHhcChhHHHHHHHHHhcccCCCCCchhhhhcHHHHHHHHHHhhccchhhhhhhhhhhhhcHHHHH
Q 002370 305 ACLMSEIGQAAPSLIVEASPEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAKNKKHVEDMFFSVFS 384 (930)
Q Consensus 305 ~~l~~~~~e~~~~~l~~~~~~~~~ll~~ll~~~~~p~~d~~v~~~~~~fW~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 384 (930)
+..+..++......+. +....+++.++.....+ +.++.+.++..|..+.... .+.+.|++.
T Consensus 235 ~~~l~~l~~~~~~~~~---~~l~~l~~~ll~~l~d~--~~~vR~~a~~~l~~l~~~~--------------~~~~~~~l~ 295 (1230)
T 1u6g_C 235 IQCIAAISRQAGHRIG---EYLEKIIPLVVKFCNVD--DDELREYCIQAFESFVRRC--------------PKEVYPHVS 295 (1230)
T ss_dssp HHHHHHHHHHSSGGGT---TSCTTHHHHHHHHHSSC--CTTTHHHHHHHHHHHHHCT--------------TCCCHHHHH
T ss_pred HHHHHHHHHHhHHHHH---HHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHC--------------hHHHHHhHH
Confidence 3333333332221111 12234666777766654 5667777777777766532 134678899
Q ss_pred HHHHHHHHHhccCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHhcCchHH--HHHHHHhhhcCCCCCCCchhhhHHHH
Q 002370 385 ALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSATF--IQKVFFGSWGSANVPIPWKEVETKLF 462 (930)
Q Consensus 385 ~Ll~~l~~k~~~p~~~~~~~~~~d~~d~f~~~R~~~~d~l~~~~~~l~~~~~--l~~~~~~~~~~~~~~~~W~~~Ea~L~ 462 (930)
++++.+++.+.++++. ..+.+.+..+++.+. + +.+.. ....+. ......|.-.++++-
T Consensus 296 ~li~~ll~~l~~d~~~-~~~~d~~~~~~~~~~----~----------~~~~~~~~~~~~~-----~~~d~~~~vR~~A~~ 355 (1230)
T 1u6g_C 296 TIINICLKYLTYDPNY-NYDDEDEDENAMDAD----G----------GDDDDQGSDDEYS-----DDDDMSWKVRRAAAK 355 (1230)
T ss_dssp HHHHHHTTCCCCC--------------------------------------------------------CTTHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCC-CCccccccccccccc----c----------cccchhhcccccc-----cccccCHHHHHHHHH
Confidence 9999999999886542 100000000111100 0 00000 000000 012356998999999
Q ss_pred HHHhhhhccccCCCccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHH-------HHH-------------h
Q 002370 463 ALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSK-------WIS-------------A 522 (930)
Q Consensus 463 ~l~~iae~~~~~~~~~~l~~i~~~l~~l~~~~~~~~~~~~~v~~~t~~~~ig~y~~-------wl~-------------~ 522 (930)
++..++...++.-. ..++.+++.+.....+++.. +|..+ +..++.... |.. .
T Consensus 356 ~l~~l~~~~~~~~~-~~~~~l~~~l~~~l~d~~~~------Vr~~a-~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (1230)
T 1u6g_C 356 CLDAVVSTRHEMLP-EFYKTVSPALISRFKEREEN------VKADV-FHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTM 427 (1230)
T ss_dssp HHHHHHTTCCTTHH-HHHTTTHHHHHSTTSCSSSH------HHHHH-HHHHHHHHHHHCCC------------CCCHHHH
T ss_pred HHHHHHHhchhHHH-HHHHHHHHHHHHHcCCCchH------HHHHH-HHHHHHHHHHhccccccccCccccccccchHHH
Confidence 99999874431000 01222333332222333221 33322 233333322 111 0
Q ss_pred chhchHHHHHHHHHhccccc--hhHHHHHHHHHHHHHhhcccCCCccHHHHH-HHHHHHHhcCCChhhHHHHHHHHHHHH
Q 002370 523 FQTNARPLLLFLAAGISEAV--SSNACASALRKICEDASALIDEPSNLEILM-WIGEALEKRHLPLEDEEEVVGAISLIL 599 (930)
Q Consensus 523 ~p~~L~~vl~~l~~~l~~p~--v~~~Aa~al~~lc~~c~~~l~~p~~~~~l~-~~~~~l~~~~l~~~~~~~l~eai~~vi 599 (930)
-..+++.+++.+.+.+.++. ++..++.++..+++.|+..+. + +++.+. .+...+....-....+......++.++
T Consensus 428 ~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~-~-~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~ 505 (1230)
T 1u6g_C 428 LQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALT-Q-HIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVIL 505 (1230)
T ss_dssp HHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTG-G-GHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhH-H-HHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHH
Confidence 12467778888888888654 788899999999999987664 3 444443 344444332223466777788888888
Q ss_pred ccCCchHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCchhhHHHHHHhHHHHHhhhcccccccccCCCCCCCCchHHH
Q 002370 600 GSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFA 679 (930)
Q Consensus 600 ~~~p~~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~l~~i~~~l~~~~~~~~~~~~p~~~ 679 (930)
...+.+. ...++..++..++..+ ... +... . ...+..++.+.+.+.. .. ......+.+
T Consensus 506 ~~~~~~~-~~~~l~~llp~L~~~l----~d~-------~~~v----~---~~al~~l~~l~~~~~~-~~--~~~~~~~~~ 563 (1230)
T 1u6g_C 506 CNHSPQV-FHPHVQALVPPVVACV----GDP-------FYKI----T---SEALLVTQQLVKVIRP-LD--QPSSFDATP 563 (1230)
T ss_dssp HSSCGGG-GHHHHTTTHHHHHHHH----TCS-------SHHH----H---HHHHHHHHHHHHHHCC-SS--SCCCCCCHH
T ss_pred HhCCHHH-HHhHHHHHHHHHHHHH----ccc-------chHH----H---HHHHHHHHHHHHHhcC-cc--cccccchHH
Confidence 7666543 3556666666555432 211 1100 0 1123333333433321 00 011223556
Q ss_pred HHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhhhhhCCcchHHHHHHHHHHHhcCC
Q 002370 680 LLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTNFVSFQNHECYIRTASVVIEEFGHK 759 (930)
Q Consensus 680 ~~~~i~~~l~~i~~~~~~~~~~v~e~~c~~~~~~i~~l~~~~~p~l~~l~~~l~~~~~~~~~~~~~L~l~~~li~~fg~~ 759 (930)
++..++|.+...+. ....+.++.+.+..+++.++...|..+.+.+|.+++.+.............+..++.+...-++
T Consensus 564 ~~~~ll~~ll~~l~-~~d~~~~vr~~a~~~lg~L~~~~g~~~~~~~~~~l~~L~~~l~~e~~r~~~~~al~~i~~~~~~- 641 (1230)
T 1u6g_C 564 YIKDLFTCTIKRLK-AADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPLK- 641 (1230)
T ss_dssp HHHHHHHHHHHHHS-CSSSCHHHHHHHHHHHHHHHHHTGGGCCTHHHHHHHHHHHHTTSSSHHHHHHHHHHHHTTCSSC-
T ss_pred HHHHHHHHHHHHHh-ccCCCHHHHHHHHHHHHHHHHHhCchhhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHhCccc-
Confidence 77888888887775 3456778999999999999999999888888998888776543210011123333333321111
Q ss_pred CCccchHHHHHHHHhhhHHHHHhhcCCCCCCCCchHHHHHHHHHHHHhhhhHHHHhhchhchHHHHHHHHHhhccCchhH
Q 002370 760 DEYGPLFVTTFERFSQAASVRALNSSYICDQEPDLVEAYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICCTAMHRGA 839 (930)
Q Consensus 760 ~~~~~~l~~l~~~l~~~~~~~~l~~~~~~~~~pD~~~~~f~l~~~~l~~~p~~~~~s~~~~l~~~l~~~l~~l~~~e~~~ 839 (930)
.+..+.+..++..+.. .+. +++++++......+.+++++++..+.. +.+..++...+..+...+.+.
T Consensus 642 ~~~~~~~~~i~~~L~~-----~l~-----~~~~~~r~~a~~al~~l~~~~~~~~~~---~~v~~~l~~ll~ll~~~D~~~ 708 (1230)
T 1u6g_C 642 IDLRPVLGEGVPILAS-----FLR-----KNQRALKLGTLSALDILIKNYSDSLTA---AMIDAVLDELPPLISESDMHV 708 (1230)
T ss_dssp CCCHHHHHHHHHHHHH-----HTT-----SCCHHHHHHHHHHHHHHHHHCCTTCCH---HHHHHHHTTCGGGSCTTCHHH
T ss_pred cchHHHHHHHHHHHHH-----HHH-----hCCHHHHHHHHHHHHHHHhcccccCCH---HHHHHHHHHHHhhcCcchHHH
Confidence 1222233333332211 121 467789999999999999998764421 234444433333334456777
Q ss_pred HHHHHHHHHHHHhh
Q 002370 840 ALAAMSYLSCFLEE 853 (930)
Q Consensus 840 ~~a~~~fl~~li~~ 853 (930)
...++.+|..++..
T Consensus 709 ~~~~~~~L~~l~~~ 722 (1230)
T 1u6g_C 709 SQMAISFLTTLAKV 722 (1230)
T ss_dssp HHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHh
Confidence 88999999998864
No 15
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.39 E-value=4.7e-07 Score=112.25 Aligned_cols=544 Identities=9% Similarity=0.029 Sum_probs=310.5
Q ss_pred hhhhHHHHHHHHHHHHHhccccccCcchhcccchHHHHHHhcCCC---CcHHHHHHHHHHHHhccCC-------hhHHHH
Q 002370 209 LHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSLQVQ---SSFDVAIEVLVELVGRHEG-------LPQALL 278 (930)
Q Consensus 209 ~~~~~~~~l~c~~sWi~~~~~~~~~~~~i~~~~ll~~l~~~L~~~---~~~~~a~~~l~ei~~~~~~-------~~~~l~ 278 (930)
+..++..+..++..-.... .|.+ .+..+++.+++.+.++ ..++.++.++..+...... +...++
T Consensus 108 ~~~vr~~~~~~l~~i~~~~----~p~~--~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll 181 (861)
T 2bpt_A 108 EPRIANAAAQLIAAIADIE----LPHG--AWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNIL 181 (861)
T ss_dssp SHHHHHHHHHHHHHHHHHH----GGGT--CCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHH
T ss_pred chHHHHHHHHHHHHHHHhh----Cccc--ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHH
Confidence 3457777778877766542 1211 2456899999888754 5678899999888875431 122233
Q ss_pred hhhhhhHHhhhchhhccC--cHhHHhhHHHHHHHHHHhhhHHHHhcChhHHHHHHHHHhcccCCCCCchhhhhcHHHHHH
Q 002370 279 CRVPFLKELLLLPALTDG--DEKVIGGLACLMSEIGQAAPSLIVEASPEALALADALLSCVAFPSEDWEIADSTLQFWST 356 (930)
Q Consensus 279 ~~~~~l~~~~~~~~~~~~--d~d~~~~l~~l~~~~~e~~~~~l~~~~~~~~~ll~~ll~~~~~p~~d~~v~~~~~~fW~~ 356 (930)
+.+.. .+.++ +.+......+.+..+.+.....+.. ......+++.+..+...+ +.++...++.....
T Consensus 182 ~~l~~--------~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~-~~~~~~ll~~l~~~~~~~--~~~~r~~a~~~l~~ 250 (861)
T 2bpt_A 182 IAIVQ--------GAQSTETSKAVRLAALNALADSLIFIKNNMER-EGERNYLMQVVCEATQAE--DIEVQAAAFGCLCK 250 (861)
T ss_dssp HHHHH--------HHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTS-HHHHHHHHHHHHHHHTCS--CHHHHHHHHHHHHH
T ss_pred HHHHH--------hhcCCCCCHHHHHHHHHHHHHHHHHHHHHccC-hhHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHH
Confidence 32211 23333 4555555555555543221111110 001123555565665554 66777777776666
Q ss_pred HHHHhhccchhhhhhhhhhhhhcHHHHH-HHHHHHHHHhccCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHhcC---
Q 002370 357 LASYILGLDASIAKNKKHVEDMFFSVFS-ALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLR--- 432 (930)
Q Consensus 357 l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~Ll~~l~~k~~~p~~~~~~~~~~d~~d~f~~~R~~~~d~l~~~~~~l~--- 432 (930)
+.+... ..+.+++. .++..++..+. + . + .+.|....+.+..++....
T Consensus 251 l~~~~~--------------~~~~~~l~~~l~~~~~~~~~---~---------~-~--~~vr~~a~~~l~~l~~~~~~~~ 301 (861)
T 2bpt_A 251 IMSKYY--------------TFMKPYMEQALYALTIATMK---S---------P-N--DKVASMTVEFWSTICEEEIDIA 301 (861)
T ss_dssp HHHHHG--------------GGCHHHHHHTHHHHHHHHTT---C---------S-S--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH--------------HHHHHHHHHHHHHHHHHHHc---C---------C-c--HHHHHHHHHHHHHHHHHHHhhh
Confidence 654321 23445555 55555544331 0 0 1 2455555555555443311
Q ss_pred ------------------c--hHHHHHHHHhhhcCCC--CCCCchhhhHHHHHHHhhhhccccCCCccchhHHHHHHHHh
Q 002370 433 ------------------S--ATFIQKVFFGSWGSAN--VPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVL 490 (930)
Q Consensus 433 ------------------~--~~~l~~~~~~~~~~~~--~~~~W~~~Ea~L~~l~~iae~~~~~~~~~~l~~i~~~l~~l 490 (930)
. ..++..++..+..... ...+|....++.-+++.++..+.+ . .++.+++.+...
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~-~---~~~~l~~~l~~~ 377 (861)
T 2bpt_A 302 YELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGN-H---ILEPVLEFVEQN 377 (861)
T ss_dssp HHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGG-G---GHHHHHHHHHHH
T ss_pred hhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccH-h---HHHHHHHHHHHH
Confidence 0 1123333333322111 124598889999999999887752 1 257777777665
Q ss_pred ccCchhhhhhHHHHHHHHHHHHHHhhHHHHH--hchhchHHHHHHHHHhcccc--chhHHHHHHHHHHHHHhhcccCCCc
Q 002370 491 SASRSEELKGFMHIVYRSLADVIGSYSKWIS--AFQTNARPLLLFLAAGISEA--VSSNACASALRKICEDASALIDEPS 566 (930)
Q Consensus 491 ~~~~~~~~~~~~~v~~~t~~~~ig~y~~wl~--~~p~~L~~vl~~l~~~l~~p--~v~~~Aa~al~~lc~~c~~~l~~p~ 566 (930)
..++..+ +|.++ +..+|..++... .-..+++.+++.+++.+.++ .++..|+.++.++|+.+...+....
T Consensus 378 l~~~~~~------~r~~a-~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 450 (861)
T 2bpt_A 378 ITADNWR------NREAA-VMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQ 450 (861)
T ss_dssp TTCSSHH------HHHHH-HHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTT
T ss_pred cCCCChh------HHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHH
Confidence 5554322 45544 578888875331 12356788999999998864 4899999999999999987653223
Q ss_pred cHHHH-HHHHHHHHhcCCChhhHHHHHHHHHHHHccCCc--hHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCchhhH
Q 002370 567 NLEIL-MWIGEALEKRHLPLEDEEEVVGAISLILGSVSN--KELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYT 643 (930)
Q Consensus 567 ~~~~l-~~~~~~l~~~~l~~~~~~~l~eai~~vi~~~p~--~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~ 643 (930)
+++.+ -.+...+.. +...+.....+++.++...++ .+....+ +.+++..+.+.+..... ++..
T Consensus 451 ~~~~~l~~l~~~l~~---~~~v~~~a~~al~~l~~~~~~~~~~~l~~~----~~~il~~L~~~l~~~d~-----~~~v-- 516 (861)
T 2bpt_A 451 HLPGVVQACLIGLQD---HPKVATNCSWTIINLVEQLAEATPSPIYNF----YPALVDGLIGAANRIDN-----EFNA-- 516 (861)
T ss_dssp THHHHHHHHHHHHTS---CHHHHHHHHHHHHHHHHHHSSSSSCGGGGG----HHHHHHHHHHHHTCSCC-----GGGH--
T ss_pred HHHHHHHHHHHHhcc---ChHHHHHHHHHHHHHHHhcccccchhhHHH----HHHHHHHHHHHHhCcCc-----chHH--
Confidence 44433 333444322 256677777788877765431 0112233 34445555555543211 0100
Q ss_pred HHHHHhHHHHHhhhcccccccccCCCCCCCCchHHHHHHHHHHHHHHHHHhhh-------------ccchHHHHHHHHHH
Q 002370 644 QILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFRSEH-------------MENGNLSTAACRAL 710 (930)
Q Consensus 644 ~~l~~~~~~l~~l~~i~~~l~~~~~~~~~~~~p~~~~~~~i~~~l~~i~~~~~-------------~~~~~v~e~~c~~~ 710 (930)
+ ...+..++.+.+.... .....+.+++|.+...+.. . ....++...++.++
T Consensus 517 ---r--~~a~~al~~l~~~~~~----------~~~~~~~~l~~~l~~~l~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~l 580 (861)
T 2bpt_A 517 ---R--ASAFSALTTMVEYATD----------TVAETSASISTFVMDKLGQ-TMSVDENQLTLEDAQSLQELQSNILTVL 580 (861)
T ss_dssp ---H--HHHHHHHHHHHHHCCG----------GGHHHHHHHHHHHHHHHHH-HTTSCGGGCCHHHHHHHHHHHHHHHHHH
T ss_pred ---H--HHHHHHHHHHHHHcch----------hhHHHHHHHHHHHHHHHHH-HHhhhcccCChhhHHHHHHHHHHHHHHH
Confidence 0 0123333333333221 1345667777777666652 2 12345678899999
Q ss_pred HHHHHHhhhhhHhhHHHHHHHHHHhhhhhCC---cchHHHHHHHHHHHhcCCCCccchHHHHHHHHhhhHHHHHhhcCCC
Q 002370 711 SLAIQSSGQHFVTLLPQVLDCLSTNFVSFQN---HECYIRTASVVIEEFGHKDEYGPLFVTTFERFSQAASVRALNSSYI 787 (930)
Q Consensus 711 ~~~i~~l~~~~~p~l~~l~~~l~~~~~~~~~---~~~~L~l~~~li~~fg~~~~~~~~l~~l~~~l~~~~~~~~l~~~~~ 787 (930)
..+++.+|..+.|+++.+++.+...+..... ....+..++.++..+|.+ +.+.+..++..+.. .+.
T Consensus 581 ~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~--~~~~l~~i~~~l~~-----~l~---- 649 (861)
T 2bpt_A 581 AAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKG--FEKYLETFSPYLLK-----ALN---- 649 (861)
T ss_dssp HHHHHHCGGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGG--GHHHHHHHHHHHHH-----HHH----
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhh--HHHHHHHHHHHHHH-----Hhc----
Confidence 9999999998889999888888876653211 123455677777777753 33444443332222 232
Q ss_pred CCCCCchHHHHHHHHHHHHhhhhHHHHhhchhchHHHHHHHHHhhccC--chhHHHHHHHHHHHHHhhhh
Q 002370 788 CDQEPDLVEAYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICCTAM--HRGAALAAMSYLSCFLEECL 855 (930)
Q Consensus 788 ~~~~pD~~~~~f~l~~~~l~~~p~~~~~s~~~~l~~~l~~~l~~l~~~--e~~~~~a~~~fl~~li~~~~ 855 (930)
..++++....+.++..+.+.....+. +++..+++..+..+... +++...+++..+..++....
T Consensus 650 -~~~~~vr~~a~~~l~~l~~~~~~~~~----~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~ 714 (861)
T 2bpt_A 650 -QVDSPVSITAVGFIADISNSLEEDFR----RYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIG 714 (861)
T ss_dssp -CTTSHHHHHHHHHHHHHHHHTGGGGH----HHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHG
T ss_pred -cccHHHHHHHHHHHHHHHHHhchhcc----chHHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhh
Confidence 35688999999999999988765433 34666777666666654 37777788888888776543
No 16
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.36 E-value=5.7e-07 Score=111.66 Aligned_cols=544 Identities=10% Similarity=0.080 Sum_probs=302.4
Q ss_pred HHHHHHHHHHHHhccccccCcchhcccchHHHHHHhcCCC----CcHHHHHHHHHHHHhccC-ChhHHHHhhhhhhHHhh
Q 002370 214 RKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSLQVQ----SSFDVAIEVLVELVGRHE-GLPQALLCRVPFLKELL 288 (930)
Q Consensus 214 ~~~l~c~~sWi~~~~~~~~~~~~i~~~~ll~~l~~~L~~~----~~~~~a~~~l~ei~~~~~-~~~~~l~~~~~~l~~~~ 288 (930)
..+..|+..-.... .+.. ....+++.+++.+.++ ..+..++.++..++.... +.....++.++. .+
T Consensus 107 ~~~~~~l~~i~~~~----~~~~--~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~---~l 177 (876)
T 1qgr_A 107 SSASQCVAGIACAE----IPVN--QWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILT---AI 177 (876)
T ss_dssp CHHHHHHHHHHHHH----GGGT--CCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHH---HH
T ss_pred HHHHHHHHHHHHhh----Cccc--ccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhhHHhHHHHHHH---HH
Confidence 56667777666532 1212 2566888888888765 457788999988886532 111111122221 11
Q ss_pred hchhhccC--cHhHHhhHHHHHHHHHHhhhHHHHhcChhH-HHHHHHHHhcccCCCCCchhhhhcHHHHHHHHHHhhccc
Q 002370 289 LLPALTDG--DEKVIGGLACLMSEIGQAAPSLIVEASPEA-LALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLD 365 (930)
Q Consensus 289 ~~~~~~~~--d~d~~~~l~~l~~~~~e~~~~~l~~~~~~~-~~ll~~ll~~~~~p~~d~~v~~~~~~fW~~l~~~l~~~~ 365 (930)
. ..+.++ +.+......+.+..+.+.....+. .... ..+++.+......+ +.++...++.+...+.+...
T Consensus 178 ~-~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~--~~~~~~~il~~l~~~~~~~--~~~vr~~a~~~l~~l~~~~~--- 249 (876)
T 1qgr_A 178 I-QGMRKEEPSNNVKLAATNALLNSLEFTKANFD--KESERHFIMQVVCEATQCP--DTRVRVAALQNLVKIMSLYY--- 249 (876)
T ss_dssp H-HHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHT--SHHHHHHHHHHHHHHTTCS--SHHHHHHHHHHHHHHHHHSG---
T ss_pred H-HhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHHHHHhH---
Confidence 1 123333 344444445555554432211111 1111 13566666666554 56677778888777665321
Q ss_pred hhhhhhhhhhhhhcHHHHH-HHHHHHHHHhccCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHhc-------------
Q 002370 366 ASIAKNKKHVEDMFFSVFS-ALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLL------------- 431 (930)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~-~Ll~~l~~k~~~p~~~~~~~~~~d~~d~f~~~R~~~~d~l~~~~~~l------------- 431 (930)
..+.|++. .+++.++.-+..++ + +.|....+.+..++...
T Consensus 250 -----------~~~~~~~~~~l~~~~~~~~~~~~------------~---~v~~~al~~l~~l~~~~~~~~~~~~~~~~~ 303 (876)
T 1qgr_A 250 -----------QYMETYMGPALFAITIEAMKSDI------------D---EVALQGIEFWSNVCDEEMDLAIEASEAAEQ 303 (876)
T ss_dssp -----------GGCHHHHTTTHHHHHHHHHTCSS------------H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----------HHHHHHHHHHHHHHHHHHhcCCc------------h---HHHHHHHHHHHHHHHHHHhHhhhhcccccc
Confidence 23455555 56666655442110 1 22322222222221110
Q ss_pred -----C-c--------hHHHHHHHHhhhcCC--CCCCCchhhhHHHHHHHhhhhccccCCCccchhHHHHHHHHhccCch
Q 002370 432 -----R-S--------ATFIQKVFFGSWGSA--NVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRS 495 (930)
Q Consensus 432 -----~-~--------~~~l~~~~~~~~~~~--~~~~~W~~~Ea~L~~l~~iae~~~~~~~~~~l~~i~~~l~~l~~~~~ 495 (930)
. . +.++..++..+.... ....+|....++..+++.+++.+.+ . .++.+++.+.....++.
T Consensus 304 ~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~-~---~~~~~l~~l~~~l~~~~ 379 (876)
T 1qgr_A 304 GRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED-D---IVPHVLPFIKEHIKNPD 379 (876)
T ss_dssp SSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG-G---GHHHHHHHHHHHTTCSS
T ss_pred CCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcH-h---hHHHHHHHHHHHccCCC
Confidence 0 0 112233333332111 1135799999999999999988763 1 25677776666554443
Q ss_pred hhhhhHHHHHHHHHHHHHHhhHHHHH--hchhchHHHHHHHHHhcccc--chhHHHHHHHHHHHHHhhcccCCCccHH-H
Q 002370 496 EELKGFMHIVYRSLADVIGSYSKWIS--AFQTNARPLLLFLAAGISEA--VSSNACASALRKICEDASALIDEPSNLE-I 570 (930)
Q Consensus 496 ~~~~~~~~v~~~t~~~~ig~y~~wl~--~~p~~L~~vl~~l~~~l~~p--~v~~~Aa~al~~lc~~c~~~l~~p~~~~-~ 570 (930)
.+ +|.++ +.++|.+++... .-..+++.+++.++..+.++ .++..|+.++.++|+.+......+.+++ .
T Consensus 380 ~~------~r~~a-~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~ 452 (876)
T 1qgr_A 380 WR------YRDAA-VMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPL 452 (876)
T ss_dssp HH------HHHHH-HHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHH
T ss_pred hH------HHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHH
Confidence 22 56655 589998886542 11247788999999999875 4899999999999999887541122444 3
Q ss_pred HHHHHHHHHhcCCChhhHHHHHHHHHHHHccCC------------chHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCC
Q 002370 571 LMWIGEALEKRHLPLEDEEEVVGAISLILGSVS------------NKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHN 638 (930)
Q Consensus 571 l~~~~~~l~~~~l~~~~~~~l~eai~~vi~~~p------------~~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~ 638 (930)
+..+...+.. +...+.....+++.++...+ ..+....++ .+++..+.+.+.....+ +
T Consensus 453 l~~l~~~l~~---~~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~----~~il~~L~~~l~~~~~~----~ 521 (876)
T 1qgr_A 453 LQCLIEGLSA---EPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSF----ELIVQKLLETTDRPDGH----Q 521 (876)
T ss_dssp HHHHHHHTTS---CHHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTH----HHHHHHHHHHTTSCSSC----S
T ss_pred HHHHHHHHcC---CHHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhH----HHHHHHHHHHHhCcCcc----h
Confidence 4444444332 25567778888888875432 001112233 34444555555432110 0
Q ss_pred chhhHHHHHHhHHHHHhhhcccccccccCCCCCCCCchHHHHHHHHHHHHHHHHHhhh-------c-cc----hHHHHHH
Q 002370 639 PATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFRSEH-------M-EN----GNLSTAA 706 (930)
Q Consensus 639 ~~~~~~~l~~~~~~l~~l~~i~~~l~~~~~~~~~~~~p~~~~~~~i~~~l~~i~~~~~-------~-~~----~~v~e~~ 706 (930)
... . ...++.++.+.+.... .....+..++|.+...+.... . .| .++.+.+
T Consensus 522 ~~~-----r--~~~~~~l~~l~~~~~~----------~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~ 584 (876)
T 1qgr_A 522 NNL-----R--SSAYESLMEIVKNSAK----------DCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLL 584 (876)
T ss_dssp TTH-----H--HHHHHHHHHHHHTCCS----------TTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHH
T ss_pred hhH-----H--HHHHHHHHHHHHHCch----------hhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHH
Confidence 000 0 1234455544443321 133455666676665554110 1 12 4566888
Q ss_pred HHHHHHHHHHhh-hhhHhhHHHHHHHHHHhhhhhCC----cchHHHHHHHHHHHhcCCCCccchHHHHHHHHhhhHHHHH
Q 002370 707 CRALSLAIQSSG-QHFVTLLPQVLDCLSTNFVSFQN----HECYIRTASVVIEEFGHKDEYGPLFVTTFERFSQAASVRA 781 (930)
Q Consensus 707 c~~~~~~i~~l~-~~~~p~l~~l~~~l~~~~~~~~~----~~~~L~l~~~li~~fg~~~~~~~~l~~l~~~l~~~~~~~~ 781 (930)
|.++..++..+| ..+.|+++.+++.+...+..... ....+.+++.++...|.. +.+.+..++..+.. .
T Consensus 585 ~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~--~~~~~~~~~~~l~~-----~ 657 (876)
T 1qgr_A 585 CATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGE--FLKYMEAFKPFLGI-----G 657 (876)
T ss_dssp HHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGG--GGGGHHHHHHHHHH-----H
T ss_pred HHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHH-----H
Confidence 999999999999 88899999999988877653210 123466777777777653 44555554443222 2
Q ss_pred hhcCCCCCCCCchHHHHHHHHHHHHhhhhHHHHhhchhchHHHHHHHHHhhcc--CchhHHHHHHHHHHHHHhhh
Q 002370 782 LNSSYICDQEPDLVEAYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICCTA--MHRGAALAAMSYLSCFLEEC 854 (930)
Q Consensus 782 l~~~~~~~~~pD~~~~~f~l~~~~l~~~p~~~~~s~~~~l~~~l~~~l~~l~~--~e~~~~~a~~~fl~~li~~~ 854 (930)
+.. .+++++....+..+..+++.....+. +.++.++...+..+.. .++.....++..+..+....
T Consensus 658 l~~----~~~~~vr~~a~~~l~~l~~~~~~~~~----~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~ 724 (876)
T 1qgr_A 658 LKN----YAEYQVCLAAVGLVGDLCRALQSNII----PFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAI 724 (876)
T ss_dssp HHH----CTTHHHHHHHHHHHHHHHHHHGGGGH----HHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHH
T ss_pred HcC----cchHHHHHHHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHhCCccccHHhhHHHHHHHHHHHHHh
Confidence 322 24688999999999999988765433 3456677776666765 35667778888888877543
No 17
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=99.09 E-value=1e-08 Score=106.55 Aligned_cols=129 Identities=11% Similarity=0.176 Sum_probs=113.4
Q ss_pred HhhHHHHHHHHHHhhhhhCC---cchHHHHHHHHHHHhcCCCCccchHHHHHHHHhhhHHHHHhhcCCCCCCCCchHHHH
Q 002370 722 VTLLPQVLDCLSTNFVSFQN---HECYIRTASVVIEEFGHKDEYGPLFVTTFERFSQAASVRALNSSYICDQEPDLVEAY 798 (930)
Q Consensus 722 ~p~l~~l~~~l~~~~~~~~~---~~~~L~l~~~li~~fg~~~~~~~~l~~l~~~l~~~~~~~~l~~~~~~~~~pD~~~~~ 798 (930)
..++|++++.++.+|..+.| .+.+|.+.+.+|.+.|+. ..+.+...++.+-++| +.++. .++.++||.+..|
T Consensus 68 ~~~ippLl~~VL~DY~~~vp~aRepeVL~l~~tii~kl~~~--i~~~vp~Il~~VFe~T-L~MI~--~df~eyPehR~~F 142 (321)
T 1w9c_A 68 ENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGH--ITAEIPQIFDAVFECT-LNMIN--KDFEEYPEHRTNF 142 (321)
T ss_dssp HHTHHHHHHHHHHHHHTSCGGGCCTHHHHHHHHHHHHHGGG--GGGGHHHHHHHHHHHH-HHHHS--STTTCSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHH--hhhhHHHHHHHHHHHH-HHHHh--cccccChHHHHHH
Confidence 35789999999999987643 577999999999999974 5566777777777887 88887 4889999999999
Q ss_pred HHHHHHHHhhhhHHHHhhchhchHHHHHHHHHhhccCchhHHHHHHHHHHHHHhhhh
Q 002370 799 TNFASTFVRTSRKEVLAASGALLEVSFQKAAICCTAMHRGAALAAMSYLSCFLEECL 855 (930)
Q Consensus 799 f~l~~~~l~~~p~~~~~s~~~~l~~~l~~~l~~l~~~e~~~~~a~~~fl~~li~~~~ 855 (930)
|.|+..+..+|+..++..+++.+..++++++||+++++|++...+++.+.+++....
T Consensus 143 f~LL~ai~~~cF~al~~lp~~~fklvidsiiWa~kH~~r~V~e~gL~il~~ll~n~~ 199 (321)
T 1w9c_A 143 FLLLQAVNSHCFPAFLAIPPTQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVA 199 (321)
T ss_dssp HHHHHHHHHHCTTHHHHSCHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHh
Confidence 999999999999999998878899999999999999999999999999999998764
No 18
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=98.82 E-value=7.7e-06 Score=96.32 Aligned_cols=473 Identities=12% Similarity=0.037 Sum_probs=270.2
Q ss_pred HHHHHHHhccCCChHHHHHHHHHHHHhhcC-h--HHHH----HHHHhhccCCCCCCccchhHHhhhHHhHHHhccCcCCC
Q 002370 9 VAQAVHVLNHDTESCNRVAANQWLVQFQQT-D--AAWE----IATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYL 81 (930)
Q Consensus 9 v~~av~~ly~~~d~~~~~~A~~~L~~fq~s-~--~aW~----~~~~LL~~~~~~~~~~~~v~ffaA~tL~~ki~~~~~~l 81 (930)
+..++..+....++..|+.|-+.|.++-.. + .-|. +...+..+ .+..+|..|+.++..-..+ +
T Consensus 88 ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~~------~~~~~R~~a~~~l~~~~~~----~ 157 (588)
T 1b3u_A 88 LLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGG------DWFTSRTSACGLFSVCYPR----V 157 (588)
T ss_dssp GHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTC------SSHHHHHHHGGGHHHHTTT----S
T ss_pred HHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhcC------CCcHHHHHHHHHHHHHHHh----c
Confidence 444555555566788899999888886543 1 2233 33333332 2468899898888765432 4
Q ss_pred ChHHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHhcc---cCchHHHHHHHhhcccCCCchhHHHHHHHhhhh
Q 002370 82 QSAAKDALLNALLVAAKRFS-SGPPQLLTQICLALSALILRAVE---HGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLP 157 (930)
Q Consensus 82 ~~e~~~~lr~~Ll~~l~~~~-~~~~~v~~kL~~~La~l~~~~~~---W~~~i~~li~~~~~~~~~~~~~~~~L~iL~~l~ 157 (930)
+...+ +.++..+.... ..+..||...+.+|+.++..... ++..++.+...++.. +.......+..|..+.
T Consensus 158 ~~~~~----~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~--~~~vr~~a~~~l~~l~ 231 (588)
T 1b3u_A 158 SSAVK----AELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDE--QDSVRLLAVEACVNIA 231 (588)
T ss_dssp CHHHH----HHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCS--CHHHHTTHHHHHHHHH
T ss_pred CHHHH----HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHHhcCC--cHHHHHHHHHHHHHHH
Confidence 54444 44444443332 35678999999999998866541 355566666655432 2222234455555554
Q ss_pred cccccccccccCCCHHHHHHHHHHHHhhhhHHHHHHHHHHhhccCCCCCcchhhhHHHHHHHHHHHHHhccccccCcchh
Q 002370 158 EEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSL 237 (930)
Q Consensus 158 EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~c~~sWi~~~~~~~~~~~~i 237 (930)
+.+. ... ..+.++.++...+.. ++..++..+.+++....... +.+ .
T Consensus 232 ~~~~----------~~~----------~~~~~~~~l~~~~~d--------~~~~vR~~a~~~l~~l~~~~-----~~~-~ 277 (588)
T 1b3u_A 232 QLLP----------QED----------LEALVMPTLRQAAED--------KSWRVRYMVADKFTELQKAV-----GPE-I 277 (588)
T ss_dssp HHSC----------HHH----------HHHHTHHHHHHHHTC--------SSHHHHHHHHHTHHHHHHHH-----CHH-H
T ss_pred HhCC----------HHH----------HHHHHHHHHHHHccC--------CCHHHHHHHHHHHHHHHHHh-----Ccc-c
Confidence 4331 110 123344555444432 24568899999998887632 112 2
Q ss_pred cccchHHHHHHhcCCC--CcHHHHHHHHHHHHhccCC------hhHHHHhhhhhhHHhhhchhhccCcHhHHhhHHHHHH
Q 002370 238 AAHPLLNFVFNSLQVQ--SSFDVAIEVLVELVGRHEG------LPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMS 309 (930)
Q Consensus 238 ~~~~ll~~l~~~L~~~--~~~~~a~~~l~ei~~~~~~------~~~~l~~~~~~l~~~~~~~~~~~~d~d~~~~l~~l~~ 309 (930)
....+++.+...+.++ +++..|+.++..+...... +...++|.+.. ..++.+.......+..+.
T Consensus 278 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~--------~l~d~~~~vR~~a~~~l~ 349 (588)
T 1b3u_A 278 TKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKE--------LVSDANQHVKSALASVIM 349 (588)
T ss_dssp HHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHH--------HHTCSCHHHHHHHHTTGG
T ss_pred chhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHH--------HhcCCCHHHHHHHHHHHH
Confidence 2345788888888765 5678899999888875432 12233333221 234455555555555554
Q ss_pred HHHHhhhHHHHhcChhHHHHHHHHHhcccCCCCCchhhhhcHHHHHHHHHHhhccchhhhhhhhhhhhhcHHHHHHHHHH
Q 002370 310 EIGQAAPSLIVEASPEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAKNKKHVEDMFFSVFSALLDA 389 (930)
Q Consensus 310 ~~~e~~~~~l~~~~~~~~~ll~~ll~~~~~p~~d~~v~~~~~~fW~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Ll~~ 389 (930)
.+++...... ....+++.++.+...+ +.+|...++..+..+.+.+ ... . +...+++.
T Consensus 350 ~l~~~~~~~~-----~~~~l~p~l~~~l~d~--~~~Vr~~a~~~l~~l~~~~---~~~------~-------~~~~~lp~ 406 (588)
T 1b3u_A 350 GLSPILGKDN-----TIEHLLPLFLAQLKDE--CPEVRLNIISNLDCVNEVI---GIR------Q-------LSQSLLPA 406 (588)
T ss_dssp GGHHHHCHHH-----HHHHTHHHHHHHHTCS--CHHHHHHHHTTCHHHHHHS---CHH------H-------HHHHHHHH
T ss_pred HHHHHhhHhH-----HHHHHHHHHHHHhCCC--chHHHHHHHHHHHHHHHhc---CHH------H-------HHHHHHHH
Confidence 4443321110 1124556666666664 5667777776666655432 110 0 11223333
Q ss_pred HHHHhccCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHhcCchH----HHHHHHHhhhcCCCCCCCchhhhHHHHHHH
Q 002370 390 LLLRAQVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSAT----FIQKVFFGSWGSANVPIPWKEVETKLFALN 465 (930)
Q Consensus 390 l~~k~~~p~~~~~~~~~~d~~d~f~~~R~~~~d~l~~~~~~l~~~~----~l~~~~~~~~~~~~~~~~W~~~Ea~L~~l~ 465 (930)
+..-+. + .+ ...|....+.+..+...+|.+. ++..++..+ . ..+|.-.++++.+++
T Consensus 407 l~~~~~---d-----------~~-~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l-~----d~~~~Vr~~a~~~l~ 466 (588)
T 1b3u_A 407 IVELAE---D-----------AK-WRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWL-V----DHVYAIREAATSNLK 466 (588)
T ss_dssp HHHHHT---C-----------SS-HHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGG-G----CSSHHHHHHHHHHHH
T ss_pred HHHHhc---C-----------CC-chHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHh-c----CCcHHHHHHHHHHHH
Confidence 332221 1 11 2467777788888777777642 233333322 2 346888899999999
Q ss_pred hhhhccccCCCccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHhchhchHHHHHHHHHhcccc--ch
Q 002370 466 VVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGISEA--VS 543 (930)
Q Consensus 466 ~iae~~~~~~~~~~l~~i~~~l~~l~~~~~~~~~~~~~v~~~t~~~~ig~y~~wl~~~p~~L~~vl~~l~~~l~~p--~v 543 (930)
.+++.+..+. .++.+++.+..+..++... +|.++ +.++|..++.+... .+++.+++.+.+.+.++ .+
T Consensus 467 ~l~~~~~~~~---~~~~llp~l~~~~~~~~~~------~R~~a-~~~l~~l~~~~~~~-~~~~~~~~~l~~~l~d~~~~V 535 (588)
T 1b3u_A 467 KLVEKFGKEW---AHATIIPKVLAMSGDPNYL------HRMTT-LFCINVLSEVCGQD-ITTKHMLPTVLRMAGDPVANV 535 (588)
T ss_dssp HHHHHHCHHH---HHHHTHHHHHHTTTCSCHH------HHHHH-HHHHHHHHHHHHHH-HHHHHTHHHHHHGGGCSCHHH
T ss_pred HHHHHhCchh---HHHHHHHHHHHHhhCCCHH------HHHHH-HHHHHHHHHhcCHH-HHHHHHHHHHHhhCCCCCchH
Confidence 9988765321 1345555555555555422 56655 58999998876543 37788899999988874 59
Q ss_pred hHHHHHHHHHHHHHhhcccCCCccHHHHHHHHHHHHhcCCChhhHHHHHHHHHHH
Q 002370 544 SNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLI 598 (930)
Q Consensus 544 ~~~Aa~al~~lc~~c~~~l~~p~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~v 598 (930)
+..++.++..+++..+... ..+.+......+.+ .-+.+.|....++++.+
T Consensus 536 r~~a~~~l~~l~~~~~~~~----~~~~~~p~l~~l~~-d~d~~vr~~a~~al~~l 585 (588)
T 1b3u_A 536 RFNVAKSLQKIGPILDNST----LQSEVKPILEKLTQ-DQDVDVKYFAQEALTVL 585 (588)
T ss_dssp HHHHHHHHHHHGGGSCHHH----HHHHHHHHHHHHTT-CSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhchhh----hHHHHHHHHHHHcC-CCchhHHHHHHHHHHHh
Confidence 9999999999987654432 11233333333322 23566777777777654
No 19
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=98.81 E-value=2.2e-05 Score=101.10 Aligned_cols=546 Identities=11% Similarity=0.071 Sum_probs=295.3
Q ss_pred chhhhHHHHHHHHHHHHHhccccccCcchhcccchHHHHHHhcCCC--CcHHHHHHHHHHHHhccCC-hhHHHHhhhhhh
Q 002370 208 QLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSLQVQ--SSFDVAIEVLVELVGRHEG-LPQALLCRVPFL 284 (930)
Q Consensus 208 ~~~~~~~~~l~c~~sWi~~~~~~~~~~~~i~~~~ll~~l~~~L~~~--~~~~~a~~~l~ei~~~~~~-~~~~l~~~~~~l 284 (930)
++.+++..|..-+...+..... ..+ .-....+++.+++.|.++ +.+..|+.++..+.....+ ....+++.++.
T Consensus 18 ~d~~~R~~A~~~L~~~l~~~~~-~~~--~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~~~~~i~~~Ll~- 93 (1230)
T 1u6g_C 18 SDKDFRFMATNDLMTELQKDSI-KLD--DDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVETIVDTLCT- 93 (1230)
T ss_dssp SSHHHHHHHHHHHHHHTSSSCC-SCC--TTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH-
T ss_pred CCHhHHHHHHHHHHHHHccccc-CCC--hhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-
Confidence 4567888898888776653311 111 112345788888888754 5688899999988865432 22233332221
Q ss_pred HHhhhchhhccCcHhHHhhHHHHHHHHHHhhhHHHHhc---ChhHHHHHHHHHhccc-CCCCCchhhhhcHHHHHHHHHH
Q 002370 285 KELLLLPALTDGDEKVIGGLACLMSEIGQAAPSLIVEA---SPEALALADALLSCVA-FPSEDWEIADSTLQFWSTLASY 360 (930)
Q Consensus 285 ~~~~~~~~~~~~d~d~~~~l~~l~~~~~e~~~~~l~~~---~~~~~~ll~~ll~~~~-~p~~d~~v~~~~~~fW~~l~~~ 360 (930)
.+.+++.......+..+..++......-..+ ......+++.++.+.. .+ +..+...+++.|..+.+.
T Consensus 94 -------~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~--~~~~~~~al~~l~~~~~~ 164 (1230)
T 1u6g_C 94 -------NMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQE--DVSVQLEALDIMADMLSR 164 (1230)
T ss_dssp -------HTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCS--CHHHHHHHHHHHHHHHHH
T ss_pred -------HhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCC--chHHHHHHHHHHHHHHHH
Confidence 3344444444455555555544332210000 0123577888888776 34 567888899999888764
Q ss_pred hhccchhhhhhhhhhhhhcHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHhcCch---HHH
Q 002370 361 ILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSA---TFI 437 (930)
Q Consensus 361 l~~~~~~~~~~~~~~~~~~~~~~~~Ll~~l~~k~~~p~~~~~~~~~~d~~d~f~~~R~~~~d~l~~~~~~l~~~---~~l 437 (930)
.. ..+.|++.+++..++..+.-| + ...|......+..+....+.. .++
T Consensus 165 ~~--------------~~l~~~~~~ll~~l~~~L~~~-------------~--~~vR~~a~~al~~l~~~~~~~~~~~~l 215 (1230)
T 1u6g_C 165 QG--------------GLLVNFHPSILTCLLPQLTSP-------------R--LAVRKRTIIALGHLVMSCGNIVFVDLI 215 (1230)
T ss_dssp TC--------------SSCTTTHHHHHHHHGGGGGCS-------------S--HHHHHHHHHHHHHHTTTC----CTTHH
T ss_pred hH--------------hHHHHHHHHHHHHHHHHHcCC-------------c--HHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 21 123345566666666555311 1 246766666666666555432 234
Q ss_pred HHHHHhhhcCCCCCCCchhhhHHHHHHHhhhhccccCCCccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhH
Q 002370 438 QKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYS 517 (930)
Q Consensus 438 ~~~~~~~~~~~~~~~~W~~~Ea~L~~l~~iae~~~~~~~~~~l~~i~~~l~~l~~~~~~~~~~~~~v~~~t~~~~ig~y~ 517 (930)
..++..+... .+|.....++-+++.+++.+++.-. ..++.+++.+.....++.+. +|..+ +.+++.++
T Consensus 216 ~~l~~~L~~~----~~~~~r~~a~~~l~~l~~~~~~~~~-~~l~~l~~~ll~~l~d~~~~------vR~~a-~~~l~~l~ 283 (1230)
T 1u6g_C 216 EHLLSELSKN----DSMSTTRTYIQCIAAISRQAGHRIG-EYLEKIIPLVVKFCNVDDDE------LREYC-IQAFESFV 283 (1230)
T ss_dssp HHHHHHHHHT----CSSCSCTTHHHHHHHHHHHSSGGGT-TSCTTHHHHHHHHHSSCCTT------THHHH-HHHHHHHH
T ss_pred HHHHHHhccC----CchhHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHHHHhcCCCHH------HHHHH-HHHHHHHH
Confidence 4454444331 1255667788899998887654221 12466777655544333222 34433 46666655
Q ss_pred HHHHhc-hhchHHHHHHHHHhccc---------------------------------------cchhHHHHHHHHHHHHH
Q 002370 518 KWISAF-QTNARPLLLFLAAGISE---------------------------------------AVSSNACASALRKICED 557 (930)
Q Consensus 518 ~wl~~~-p~~L~~vl~~l~~~l~~---------------------------------------p~v~~~Aa~al~~lc~~ 557 (930)
...... ..|++.+++.++..+.. .+++..|+.++..++..
T Consensus 284 ~~~~~~~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~ 363 (1230)
T 1u6g_C 284 RRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVST 363 (1230)
T ss_dssp HCTTCCCHHHHHHHHHHHTTCCCCC------------------------------------CTTHHHHHHHHHHHHHHTT
T ss_pred HHChHHHHHhHHHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHh
Confidence 532211 23778888888766531 12577788888888863
Q ss_pred hhcccCCCccHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHHHccCCchH-------------HHHHHHHHHHHHHHHH
Q 002370 558 ASALIDEPSNLEILMWIGEALEK--RHLPLEDEEEVVGAISLILGSVSNKE-------------LKNNLLARLLSSSYEA 622 (930)
Q Consensus 558 c~~~l~~p~~~~~l~~~~~~l~~--~~l~~~~~~~l~eai~~vi~~~p~~~-------------~~~~~l~~ll~p~~~~ 622 (930)
.+. ...+.+..+...+.. ..-....|...+++++.++....... .-...+..++..++..
T Consensus 364 ~~~-----~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ 438 (1230)
T 1u6g_C 364 RHE-----MLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKA 438 (1230)
T ss_dssp CCT-----THHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHH
T ss_pred chh-----HHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHH
Confidence 221 123333333333322 12245667788888888876532100 0012344555555555
Q ss_pred HHhhhhccCCCCCCCCchhhHHHHHHhHHHHHhhhcccccccccCCCCCCCCchHHHHHHHHHHHHHHHHHhhhccchHH
Q 002370 623 IGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFRSEHMENGNL 702 (930)
Q Consensus 623 l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~l~~i~~~l~~~~~~~~~~~~p~~~~~~~i~~~l~~i~~~~~~~~~~v 702 (930)
+.+.+... ++... ..+ +..++.+...+... ..+.+++++|.+...+.. -..+.++
T Consensus 439 l~~~l~~~-------~~~vr----~~~---~~~L~~l~~~~~~~----------l~~~l~~ll~~l~~~L~d-~~~~~~v 493 (1230)
T 1u6g_C 439 LHKQMKEK-------SVKTR----QCC---FNMLTELVNVLPGA----------LTQHIPVLVPGIIFSLND-KSSSSNL 493 (1230)
T ss_dssp HHHHTTCS-------CHHHH----HHH---HHHHHHHHHHSTTT----------TGGGHHHHHHHHHHHTTC-SSSCHHH
T ss_pred HHHHhccC-------CHHHH----HHH---HHHHHHHHHHchhh----------hHHHHHHHHHHHHHHHcC-CCCcchH
Confidence 55544422 11100 112 33333333332211 112457777887777752 1123478
Q ss_pred HHHHHHHHHHHHHHhhhh-hHhhHHHHHHHHHHhhhhhCC--cchHHHHHHHHHHHhcCC-----CCccchHHHHHHHHh
Q 002370 703 STAACRALSLAIQSSGQH-FVTLLPQVLDCLSTNFVSFQN--HECYIRTASVVIEEFGHK-----DEYGPLFVTTFERFS 774 (930)
Q Consensus 703 ~e~~c~~~~~~i~~l~~~-~~p~l~~l~~~l~~~~~~~~~--~~~~L~l~~~li~~fg~~-----~~~~~~l~~l~~~l~ 774 (930)
.+.++..+...+...++. +.|+++.+++.+...+....+ ....+..+..++..+|.. ..+.+.+..++..+.
T Consensus 494 ~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll 573 (1230)
T 1u6g_C 494 KIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTI 573 (1230)
T ss_dssp HHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHH
Confidence 899999999988877665 667776666666655432211 123567788888888761 233344444444322
Q ss_pred hhHHHHHhhcCCCCCCCCchHHHHHHHHHHHHhhhhHHHHhhchhchHHHHHHHHHhhccCchhHHHHHHHHHHHHH
Q 002370 775 QAASVRALNSSYICDQEPDLVEAYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICCTAMHRGAALAAMSYLSCFL 851 (930)
Q Consensus 775 ~~~~~~~l~~~~~~~~~pD~~~~~f~l~~~~l~~~p~~~~~s~~~~l~~~l~~~l~~l~~~e~~~~~a~~~fl~~li 851 (930)
..+.. .+.++++.+..+..++.+..+....+. +.++.+++.....+... .....+++.+..+.
T Consensus 574 -----~~l~~---~d~~~~vr~~a~~~lg~L~~~~g~~~~----~~~~~~l~~L~~~l~~e--~~r~~~~~al~~i~ 636 (1230)
T 1u6g_C 574 -----KRLKA---ADIDQEVKERAISCMGQIICNLGDNLG----SDLPNTLQIFLERLKNE--ITRLTTVKALTLIA 636 (1230)
T ss_dssp -----HHHSC---SSSCHHHHHHHHHHHHHHHHHTGGGCC----THHHHHHHHHHHHTTSS--SHHHHHHHHHHHHT
T ss_pred -----HHHhc---cCCCHHHHHHHHHHHHHHHHHhCchhh----hhHHHHHHHHHHHhccc--hhHHHHHHHHHHHH
Confidence 23321 256788999999999999988766543 23556666555555432 22333444444443
No 20
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=98.77 E-value=3.9e-05 Score=90.24 Aligned_cols=503 Identities=11% Similarity=0.010 Sum_probs=269.0
Q ss_pred HHHHHHHHHHhccCCChHHHHHHHHHHHHhhc---ChHHHHHHHHhhccCCCCCCccchhHHhhhHHhHHHhccCcCCCC
Q 002370 6 QIKVAQAVHVLNHDTESCNRVAANQWLVQFQQ---TDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQ 82 (930)
Q Consensus 6 ~~~v~~av~~ly~~~d~~~~~~A~~~L~~fq~---s~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~ki~~~~~~l~ 82 (930)
...+...+..+- ++|+..|..|-+-|..+-. ....|.-....|.... ..+.++|..++..|..-... ++
T Consensus 9 ~~~i~~l~~~l~-s~~~~~R~~A~~~l~~i~~~~~~~~~~~~l~~~L~~~~---d~~~~vr~~~~~~L~~~~~~----~~ 80 (588)
T 1b3u_A 9 LYPIAVLIDELR-NEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTI---YDEDEVLLALAEQLGTFTTL----VG 80 (588)
T ss_dssp SHHHHHHHHHTT-CSCHHHHHHHHHTHHHHHHHSCHHHHHHTHHHHHHHTC---CCCHHHHHHHHHHHTTCSGG----GT
T ss_pred cCcHHHHHHHhh-cccHHHHHHHHHhHHHHHHHhCHHHHHHHHHHHHHHhc---CCcHHHHHHHHHHHHHHHhc----cC
Confidence 446777777775 6788899999888876432 2345665555554321 12468999998888632221 11
Q ss_pred -hHHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHhcc---cCchHHHHHHHhhcccCCCchhHHHHHHHhhhh
Q 002370 83 -SAAKDALLNALLVAAKRFS-SGPPQLLTQICLALSALILRAVE---HGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLP 157 (930)
Q Consensus 83 -~e~~~~lr~~Ll~~l~~~~-~~~~~v~~kL~~~La~l~~~~~~---W~~~i~~li~~~~~~~~~~~~~~~~L~iL~~l~ 157 (930)
.+.. ..++..+.... ..+..||.+.+.+|..++..... |+..++-+.....+. +.........++..+.
T Consensus 81 ~~~~~----~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~~~--~~~~R~~a~~~l~~~~ 154 (588)
T 1b3u_A 81 GPEYV----HCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGD--WFTSRTSACGLFSVCY 154 (588)
T ss_dssp SGGGG----GGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCS--SHHHHHHHGGGHHHHT
T ss_pred cHHHH----HHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHH
Confidence 1222 22333333332 35678999999999998876542 333344333333221 2223344455555544
Q ss_pred cccccccccccCCCHHHHHHHHHHHHhhhhHHHHHHHHHHhhccCCCCCcchhhhHHHHHHHHHHHHHhccccccCcchh
Q 002370 158 EEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSL 237 (930)
Q Consensus 158 EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~c~~sWi~~~~~~~~~~~~i 237 (930)
+-+ +... .+.++..+...+.. ++..++..+++++..+.... +.+ .
T Consensus 155 ~~~----------~~~~-----------~~~l~~~l~~l~~d--------~~~~VR~~a~~~l~~l~~~~-----~~~-~ 199 (588)
T 1b3u_A 155 PRV----------SSAV-----------KAELRQYFRNLCSD--------DTPMVRRAAASKLGEFAKVL-----ELD-N 199 (588)
T ss_dssp TTS----------CHHH-----------HHHHHHHHHHHHTC--------SCHHHHHHHHHHHHHHHHTS-----CHH-H
T ss_pred Hhc----------CHHH-----------HHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHHHHHh-----cHH-h
Confidence 322 2111 22444455444432 34679999999999998743 222 2
Q ss_pred cccchHHHHHHhcCCC--CcHHHHHHHHHHHHhccCC--hhHHHHhhhhhhHHhhhchhhccCcHhHHhhHHHHHHHHHH
Q 002370 238 AAHPLLNFVFNSLQVQ--SSFDVAIEVLVELVGRHEG--LPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMSEIGQ 313 (930)
Q Consensus 238 ~~~~ll~~l~~~L~~~--~~~~~a~~~l~ei~~~~~~--~~~~l~~~~~~l~~~~~~~~~~~~d~d~~~~l~~l~~~~~e 313 (930)
....+++.+...+.++ ..+..|++++..+.....+ ....++|.+.. ...+++.......+..+..+++
T Consensus 200 ~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~--------~~~d~~~~vR~~a~~~l~~l~~ 271 (588)
T 1b3u_A 200 VKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQ--------AAEDKSWRVRYMVADKFTELQK 271 (588)
T ss_dssp HHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHHHHHHTHHHHHH--------HHTCSSHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--------HccCCCHHHHHHHHHHHHHHHH
Confidence 2356888888888765 4567888998887765331 12223332221 2344555566666666666655
Q ss_pred hhhHHHHhcChhHHHHHHHHHhcccCCCCCchhhhhcHHHHHHHHHHhhcc------------------chhhhhhhhhh
Q 002370 314 AAPSLIVEASPEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGL------------------DASIAKNKKHV 375 (930)
Q Consensus 314 ~~~~~l~~~~~~~~~ll~~ll~~~~~p~~d~~v~~~~~~fW~~l~~~l~~~------------------~~~~~~~~~~~ 375 (930)
....-. ....+++.++.++..+ +.++...+...+..+.+.+... .+....-|...
T Consensus 272 ~~~~~~-----~~~~l~~~l~~~l~d~--~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a 344 (588)
T 1b3u_A 272 AVGPEI-----TKTDLVPAFQNLMKDC--EAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSAL 344 (588)
T ss_dssp HHCHHH-----HHHTHHHHHHHHHTCS--SHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHH
T ss_pred HhCccc-----chhHHHHHHHHHhCCC--cHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 331100 1123455555555554 4556555555544444322100 00000000000
Q ss_pred ---hhhcH------HHHHHHHHHHHHHhccCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHhcCchHHHHHHHHhhhc
Q 002370 376 ---EDMFF------SVFSALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSATFIQKVFFGSWG 446 (930)
Q Consensus 376 ---~~~~~------~~~~~Ll~~l~~k~~~p~~~~~~~~~~d~~d~f~~~R~~~~d~l~~~~~~l~~~~~l~~~~~~~~~ 446 (930)
...+. .....+++.++..+. |+ + .+.|......+..+...+|.+.....++..+..
T Consensus 345 ~~~l~~l~~~~~~~~~~~~l~p~l~~~l~------------d~-~--~~Vr~~a~~~l~~l~~~~~~~~~~~~~lp~l~~ 409 (588)
T 1b3u_A 345 ASVIMGLSPILGKDNTIEHLLPLFLAQLK------------DE-C--PEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVE 409 (588)
T ss_dssp HTTGGGGHHHHCHHHHHHHTHHHHHHHHT------------CS-C--HHHHHHHHTTCHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHhHHHHHHHHHHHHHhC------------CC-c--hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 00010 012233333333331 00 1 235555555555555555543222222222111
Q ss_pred CCCCCCCchhhhHHHHHHHhhhhccccCCCccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHhchhc
Q 002370 447 SANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTN 526 (930)
Q Consensus 447 ~~~~~~~W~~~Ea~L~~l~~iae~~~~~~~~~~l~~i~~~l~~l~~~~~~~~~~~~~v~~~t~~~~ig~y~~wl~~~p~~ 526 (930)
. ....+|+...+++-+++.+++.+..+. . .+.+++.+.....++... +|..+ +..+|....-+..+ .+
T Consensus 410 ~-~~d~~~~vr~~~~~~l~~l~~~~~~~~--~-~~~l~~~l~~~l~d~~~~------Vr~~a-~~~l~~l~~~~~~~-~~ 477 (588)
T 1b3u_A 410 L-AEDAKWRVRLAIIEYMPLLAGQLGVEF--F-DEKLNSLCMAWLVDHVYA------IREAA-TSNLKKLVEKFGKE-WA 477 (588)
T ss_dssp H-HTCSSHHHHHHHHHHHHHHHHHHCGGG--C-CHHHHHHHHHGGGCSSHH------HHHHH-HHHHHHHHHHHCHH-HH
T ss_pred H-hcCCCchHHHHHHHHHHHHHHHcCHHH--H-HHHHHHHHHHHhcCCcHH------HHHHH-HHHHHHHHHHhCch-hH
Confidence 0 024579999999999999988776432 1 256667666655554322 56545 47888877655332 24
Q ss_pred hHHHHHHHHHhccccc--hhHHHHHHHHHHHHHhhcccCCCccHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHccCCc
Q 002370 527 ARPLLLFLAAGISEAV--SSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGSVSN 604 (930)
Q Consensus 527 L~~vl~~l~~~l~~p~--v~~~Aa~al~~lc~~c~~~l~~p~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~vi~~~p~ 604 (930)
++.+++.+...+.++. ++..|+.++..+++.|+... +.+.+......+.. .-..+.|..+++++|.+...+..
T Consensus 478 ~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~----~~~~~~~~l~~~l~-d~~~~Vr~~a~~~l~~l~~~~~~ 552 (588)
T 1b3u_A 478 HATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDI----TTKHMLPTVLRMAG-DPVANVRFNVAKSLQKIGPILDN 552 (588)
T ss_dssp HHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHH----HHHHTHHHHHHGGG-CSCHHHHHHHHHHHHHHGGGSCH
T ss_pred HHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHHH----HHHHHHHHHHhhCC-CCCchHHHHHHHHHHHHHHHhch
Confidence 5677777777666644 88999999999999887532 22222222221111 22467899999999999988764
No 21
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=97.78 E-value=0.039 Score=62.03 Aligned_cols=110 Identities=10% Similarity=0.063 Sum_probs=78.7
Q ss_pred CCCchhhhHHHHHHHhhhhccccCCCccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHh--chhchH
Q 002370 451 PIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISA--FQTNAR 528 (930)
Q Consensus 451 ~~~W~~~Ea~L~~l~~iae~~~~~~~~~~l~~i~~~l~~l~~~~~~~~~~~~~v~~~t~~~~ig~y~~wl~~--~p~~L~ 528 (930)
..+|....++.-+++.+++.+.+ . .++.+++.+.....++..+ +|.++ +.++|..++-... -..+++
T Consensus 339 ~~~~~~r~~a~~~L~~l~~~~~~--~--~~~~~~~~l~~~l~~~~~~------~r~aa-l~~l~~l~~~~~~~~~~~~l~ 407 (462)
T 1ibr_B 339 DDDWNPCKAAGVCLMLLATCCED--D--IVPHVLPFIKEHIKNPDWR------YRDAA-VMAFGCILEGPEPSQLKPLVI 407 (462)
T ss_dssp TTCCSHHHHHHHHHHHHHHHTTT--T--HHHHHHHHHHHHTTCSSHH------HHHHH-HHHHHHTSSSSCTTTTCTTTT
T ss_pred cccchHHHHHHHHHHHHHHhccH--H--HHHHHHHHHHHHhcCCChH------HHHHH-HHHHHHHhcCCcHHHHHHHHH
Confidence 35699999999999999998862 2 2577777776665555432 46655 5899998862210 013678
Q ss_pred HHHHHHHHhccc--cchhHHHHHHHHHHHHHhhcccCCCccHHHH
Q 002370 529 PLLLFLAAGISE--AVSSNACASALRKICEDASALIDEPSNLEIL 571 (930)
Q Consensus 529 ~vl~~l~~~l~~--p~v~~~Aa~al~~lc~~c~~~l~~p~~~~~l 571 (930)
.+++.+++.+.+ |.|+..|+.++.++|+.++..+..+.+++.+
T Consensus 408 ~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~l~~l 452 (462)
T 1ibr_B 408 QAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPL 452 (462)
T ss_dssp THHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGGCCSTTTHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHH
Confidence 899999999986 4599999999999999998765322344443
No 22
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=97.63 E-value=0.28 Score=61.04 Aligned_cols=282 Identities=9% Similarity=0.030 Sum_probs=144.2
Q ss_pred hhchHHHHHHHHHhccc-------cchhHHHHHHHHHHHHHhhcccCCCccHHHHHHHHHHHHhcCCChhhHHHHHHHHH
Q 002370 524 QTNARPLLLFLAAGISE-------AVSSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAIS 596 (930)
Q Consensus 524 p~~L~~vl~~l~~~l~~-------p~v~~~Aa~al~~lc~~c~~~l~~p~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~ 596 (930)
.+.++.+++++-..+.. .....+|..+|..+++.|..... ..++.+..+...+...+..+..|...+..+|
T Consensus 454 ~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~--~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~ 531 (971)
T 2x1g_F 454 DYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEK--RQIPRLMRVLAEIPYEKLNVKLLGTALETMG 531 (971)
T ss_dssp THHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC--------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhh--HHHHHHHHHHHhcCccccCHHHHHHHHHHHH
Confidence 35677777777666543 23688999999999998886542 2556555554444321224556777778888
Q ss_pred HHHccCCchHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCchhhHHHHHHhHHHHHhhhcccccccccCCCCCCCCch
Q 002370 597 LILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDP 676 (930)
Q Consensus 597 ~vi~~~p~~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~l~~i~~~l~~~~~~~~~~~~p 676 (930)
.....+... .+++..++..++..+ + + ..+. .+...+.++. +... ..
T Consensus 532 ~~~~~l~~~---~~~l~~vl~~l~~~l----~--~--~v~~----------~A~~al~~l~---~~~~----------~~ 577 (971)
T 2x1g_F 532 SYCNWLMEN---PAYIPPAINLLVRGL----N--S--SMSA----------QATLGLKELC---RDCQ----------LQ 577 (971)
T ss_dssp HTHHHHC-------CHHHHHHHHHHHH----H--S--SCHH----------HHHHHHHHHH---HHCH----------HH
T ss_pred HHHHHHhcC---HHHHHHHHHHHHHHh----C--h--HHHH----------HHHHHHHHHH---HHHH----------Hh
Confidence 776554421 234555555555444 2 1 1110 1233444443 2211 12
Q ss_pred HHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHhh-hhhHhhHHHHHHHHHHhhhh---hC--------Ccch
Q 002370 677 IFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSG-QHFVTLLPQVLDCLSTNFVS---FQ--------NHEC 744 (930)
Q Consensus 677 ~~~~~~~i~~~l~~i~~~~~~~~~~v~e~~c~~~~~~i~~l~-~~~~p~l~~l~~~l~~~~~~---~~--------~~~~ 744 (930)
..+++..++..+..++. .-.-+....+.+..++..++...+ ....+++..+++.+...+.. .+ ....
T Consensus 578 l~p~~~~ll~~l~~~l~-~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~ 656 (971)
T 2x1g_F 578 LKPYADPLLNACHASLN-TGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQADSKTPAARIRTIF 656 (971)
T ss_dssp HHHHHHHHHHHHHHHHH-STTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHTC---CHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHc-CCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHH
Confidence 44566666666666665 222345667777777777776553 34444444443333332221 10 1122
Q ss_pred HHHHHHHHHHHhcCCC--Cc-----cchHHHHHHHHhhhHHHHHhhcCCCCCCCCchHHHHHHHHHHHHhhhhHHHHhhc
Q 002370 745 YIRTASVVIEEFGHKD--EY-----GPLFVTTFERFSQAASVRALNSSYICDQEPDLVEAYTNFASTFVRTSRKEVLAAS 817 (930)
Q Consensus 745 ~L~l~~~li~~fg~~~--~~-----~~~l~~l~~~l~~~~~~~~l~~~~~~~~~pD~~~~~f~l~~~~l~~~p~~~~~s~ 817 (930)
++.+++.++...+... .. ...+...+..+.+.. ...+. ...++++++++.+++++++++.....+.
T Consensus 657 ~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l-~~~l~---~~~~~~~v~e~~~~~~~~~~~~~~~~~~--- 729 (971)
T 2x1g_F 657 RLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIF-KRIAE---MWVEEIDVLEAACSAMKHAITNLRSSFQ--- 729 (971)
T ss_dssp HHHHHHHHHHHHTC-------------CCHHHHHTTHHHH-HHHHH---HTTTCHHHHHHHHHHHHHHHHHHHC--C---
T ss_pred HHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHH-HHHHH---hccccHHHHHHHHHHHHHHHHhhhhhcc---
Confidence 5666777777665420 00 112222222222211 11121 1234678999999999999887665543
Q ss_pred hhchHHHHHHHHHhhccCchhHHHHHHHHHHHHHhh
Q 002370 818 GALLEVSFQKAAICCTAMHRGAALAAMSYLSCFLEE 853 (930)
Q Consensus 818 ~~~l~~~l~~~l~~l~~~e~~~~~a~~~fl~~li~~ 853 (930)
++++.+++..+.++...+ . ..++.++..++..
T Consensus 730 -p~l~~~~~~l~~~~~~~~-~--~~~l~l~~~~i~~ 761 (971)
T 2x1g_F 730 -PMLQDLCLFIVASFQTRC-C--APTLEISKTAIVM 761 (971)
T ss_dssp -THHHHHHHHHHHHCC--C-C--HHHHHHHHHHHTT
T ss_pred -ccHHHHHHHHHHHHhcCC-c--hHHHHHHHHHHHH
Confidence 467888888777776532 2 2356666666653
No 23
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=97.51 E-value=0.031 Score=65.24 Aligned_cols=461 Identities=13% Similarity=0.070 Sum_probs=224.5
Q ss_pred hccCCChHHHHHHHHHHHHhhc-ChHHHHHHHHhhccCCCCCCccchhHHhhhHHhHHHhccCcCCCChHHHHHHHHHHH
Q 002370 16 LNHDTESCNRVAANQWLVQFQQ-TDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKDALLNALL 94 (930)
Q Consensus 16 ly~~~d~~~~~~A~~~L~~fq~-s~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~ki~~~~~~l~~e~~~~lr~~Ll 94 (930)
+..++|...|+-+--++..+-+ .|+--..+..-|..+= .+.++.+|-.|..+|-.-. .++....+...+.
T Consensus 57 l~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~~n~l~kdL--~~~n~~ir~~AL~~L~~i~-------~~~~~~~l~~~l~ 127 (591)
T 2vgl_B 57 CMQTDNLELKKLVYLYLMNYAKSQPDMAIMAVNSFVKDC--EDPNPLIRALAVRTMGCIR-------VDKITEYLCEPLR 127 (591)
T ss_dssp TTSSSCHHHHHHHHHHHHHHHHHSHHHHHTTHHHHGGGS--SSSSHHHHHHHHHHHHTCC-------SGGGHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHHcccCchHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHcCC-------hHHHHHHHHHHHH
Confidence 3456677778887777777654 4554333333222211 0235678877776664322 3445555555555
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHhc-ccC--chHHHHHHHhhcccCCCchhHHHHHHHhhhhcccccccccccCCC
Q 002370 95 VAAKRFSSGPPQLLTQICLALSALILRAV-EHG--KPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDSQASDCNIS 171 (930)
Q Consensus 95 ~~l~~~~~~~~~v~~kL~~~La~l~~~~~-~W~--~~i~~li~~~~~~~~~~~~~~~~L~iL~~l~EE~~~~~~~~~~l~ 171 (930)
..+. ..++.||.+.+.++..++...+ .++ .+++.+...+... ++......+..|..+.++-.+..... +
T Consensus 128 ~~L~---d~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~--d~~V~~~A~~aL~~i~~~~~~~~~~~--l- 199 (591)
T 2vgl_B 128 KCLK---DEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIADS--NPMVVANAVAALSEISESHPNSNLLD--L- 199 (591)
T ss_dssp HHSS---CSCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSCS--CHHHHHHHHHHHHHHTTSCCSCCSCC--C-
T ss_pred HHcC---CCChHHHHHHHHHHHHHHhhChhhcccccHHHHHHHHhCCC--ChhHHHHHHHHHHHHHhhCCCccchh--c-
Confidence 4443 4578999999999999887554 244 3556666666531 33334455666666655421110000 1
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHhhccCCCCCcchhhhHHHHHHHHHHHHHhccccccCcchhcccchHHHHHHhcC
Q 002370 172 SAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSLQ 251 (930)
Q Consensus 172 ~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~c~~sWi~~~~~~~~~~~~i~~~~ll~~l~~~L~ 251 (930)
.+..+..+.+.+... ++-.+..+++++..+.+ .+.-....+++.+...+.
T Consensus 200 --------------~~~~~~~Ll~~l~~~--------~~~~q~~il~~l~~l~~--------~~~~~~~~~l~~l~~~l~ 249 (591)
T 2vgl_B 200 --------------NPQNINKLLTALNEC--------TEWGQIFILDCLSNYNP--------KDDREAQSICERVTPRLS 249 (591)
T ss_dssp --------------HHHHHHHHHHHHHHC--------CHHHHHHHHHHHHTSCC--------CSHHHHHHHHHHHTTCSC
T ss_pred --------------cHHHHHHHHHcCCCC--------CchHHHHHHHHHHHhCC--------CChHHHHHHHHHHHHHHc
Confidence 111122122212211 12234455554432211 111112356777777776
Q ss_pred C--CCcHHHHHHHHHHHHhc---cCChhHHHHhhhhhhHHhhhchhhccCcHhHHhhHHHHHHHHHHhhhHHHHhcChhH
Q 002370 252 V--QSSFDVAIEVLVELVGR---HEGLPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMSEIGQAAPSLIVEASPEA 326 (930)
Q Consensus 252 ~--~~~~~~a~~~l~ei~~~---~~~~~~~l~~~~~~l~~~~~~~~~~~~d~d~~~~l~~l~~~~~e~~~~~l~~~~~~~ 326 (930)
+ +.+.-.|+.++..+... ..+..+.+...+.. .+. .+.+.|.+......+.+..++..++..+..
T Consensus 250 ~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~---~L~--~L~~~d~~vr~~aL~~l~~i~~~~p~~~~~----- 319 (591)
T 2vgl_B 250 HANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAP---PLV--TLLSGEPEVQYVALRNINLIVQKRPEILKQ----- 319 (591)
T ss_dssp SSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHH---HHH--HHTTSCHHHHHHHHHHHHHHHHHCCSTTTT-----
T ss_pred CCChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHH---HHH--HHhcCCccHHHHHHHHHHHHHHhChHHHHH-----
Confidence 4 45556777777766431 22333433333322 111 112345554333334444444443322211
Q ss_pred HHHHHHHHhcccCCCCCchhhhhcHHHHHHHHHHhhccchhhhhhhhhhhhhcHHHHHHHHHHHHHHhccCCCCCCCCCC
Q 002370 327 LALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFNDDGM 406 (930)
Q Consensus 327 ~~ll~~ll~~~~~p~~d~~v~~~~~~fW~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Ll~~l~~k~~~p~~~~~~~~~ 406 (930)
.+..++ |.... +..|...+++.|+.+.+. + ... .++..+..-+. + .
T Consensus 320 --~~~~~~-~~~~d--~~~Ir~~al~~L~~l~~~----~------------nv~----~iv~~L~~~l~---~-----~- 365 (591)
T 2vgl_B 320 --EIKVFF-VKYND--PIYVKLEKLDIMIRLASQ----A------------NIA----QVLAELKEYAT---E-----V- 365 (591)
T ss_dssp --CTTTTS-CCTTS--CHHHHHHHHHHHHHTCCS----S------------THH----HHHHHHHHHTT---S-----S-
T ss_pred --HHHhhe-eccCC--hHHHHHHHHHHHHHHCCh----h------------hHH----HHHHHHHHHHh---c-----C-
Confidence 111111 22221 345667788777665321 0 112 23333332221 1 1
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHhcCc--hHHHHHHHHhhhcCCCCCCCchhhhHHHHHHHhhhhccccCCCccchhHHH
Q 002370 407 VDLPDGLVQFRMNLVELLVDICQLLRS--ATFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIM 484 (930)
Q Consensus 407 ~d~~d~f~~~R~~~~d~l~~~~~~l~~--~~~l~~~~~~~~~~~~~~~~W~~~Ea~L~~l~~iae~~~~~~~~~~l~~i~ 484 (930)
| .+||+.+...+..++.-..+ +.++..++..+.. ..+|-..|+ +.+++.+....++. ....++.
T Consensus 366 ----d--~~~r~~~v~aI~~la~~~~~~~~~~v~~Ll~ll~~----~~~~v~~e~-i~~l~~ii~~~p~~-~~~~v~~-- 431 (591)
T 2vgl_B 366 ----D--VDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQT----KVNYVVQEA-IVVIRDIFRKYPNK-YESIIAT-- 431 (591)
T ss_dssp ----C--HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT----CCHHHHHHH-HHHHHHHHHHSCSS-CCTTHHH--
T ss_pred ----C--HHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHcc----cchHHHHHH-HHHHHHHHHHCcch-HHHHHHH--
Confidence 1 25777776666666543321 2355555544422 234655565 55777776555432 1111222
Q ss_pred HHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHhchhchHHHHHHHHHhccc--cchhHHHHHHHHHHHHHhhccc
Q 002370 485 QLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGISE--AVSSNACASALRKICEDASALI 562 (930)
Q Consensus 485 ~~l~~l~~~~~~~~~~~~~v~~~t~~~~ig~y~~wl~~~p~~L~~vl~~l~~~l~~--p~v~~~Aa~al~~lc~~c~~~l 562 (930)
++..+.....+. ++. +++|++|+|++++...+ .++..++..+.+ +.++..+..|+.++...++..
T Consensus 432 -L~~~l~~~~~~~------~~~-~~~wilGey~~~~~~~~----~~l~~l~~~~~~~~~~vr~~~l~a~~Kl~~~~p~~- 498 (591)
T 2vgl_B 432 -LCENLDSLDEPD------ARA-AMIWIVGEYAERIDNAD----ELLESFLEGFHDESTQVQLTLLTAIVKLFLKKPSE- 498 (591)
T ss_dssp -HHHTTTTCCSHH------HHH-HHHHHHHTTCTTCTTHH----HHHHHHSTTCSSSCHHHHHHHHHHHHHHHTTCCST-
T ss_pred -HHHHHHhccCHH------HHH-HHHHHHHcccccccCHH----HHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCchH-
Confidence 333333222211 344 44699999999876533 455556655543 458999999999998755421
Q ss_pred CCCccHHHHHHHHHHHHhcCCChhhHHHHHHHHHHH
Q 002370 563 DEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLI 598 (930)
Q Consensus 563 ~~p~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~v 598 (930)
..+.+..+.........+.+.|.+-++..+.+
T Consensus 499 ----~~~~i~~ll~~~~~d~~d~evrdRA~~y~~ll 530 (591)
T 2vgl_B 499 ----TQELVQQVLSLATQDSDNPDLRDRGYIYWRLL 530 (591)
T ss_dssp ----THHHHHHHHHHHHTTCCCHHHHHHHHHHHTTT
T ss_pred ----HHHHHHHHHHHhhhcCCChHHHHHHHHHHHHH
Confidence 22444444444333334566677766655443
No 24
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.44 E-value=0.0037 Score=64.07 Aligned_cols=145 Identities=14% Similarity=0.118 Sum_probs=102.2
Q ss_pred CCCchhhhHHHHHHHh-hhhccccCCC-ccchhHHHHHHHHhc-cCchhhhhhHHHHHHHHHHHHHHhhHHHHH-h-ch-
Q 002370 451 PIPWKEVETKLFALNV-VSEVVLQEGQ-AFDFSVIMQLVAVLS-ASRSEELKGFMHIVYRSLADVIGSYSKWIS-A-FQ- 524 (930)
Q Consensus 451 ~~~W~~~Ea~L~~l~~-iae~~~~~~~-~~~l~~i~~~l~~l~-~~~~~~~~~~~~v~~~t~~~~ig~y~~wl~-~-~p- 524 (930)
+.+|+++-+++-++.. +.+++++-.. ..++..+++.+.... .+++.. ++..+ +.++|.+++-+. . -.
T Consensus 27 s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~------v~~~A-~~al~~la~~l~~~~f~~ 99 (249)
T 2qk1_A 27 SSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQ------AVALA-AQSVELICDKLKTPGFSK 99 (249)
T ss_dssp CSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHH------HHHHH-HHHHHHHHHHHCTTTSCH
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHH------HHHHH-HHHHHHHHHhcccccccH
Confidence 4679999999999999 8876553220 112456777665544 555432 45545 699999999886 3 33
Q ss_pred hchHHHHHHHHHhcccc--chhHHHHHHHHHHHHHhhcccCCCccHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHccC
Q 002370 525 TNARPLLLFLAAGISEA--VSSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGSV 602 (930)
Q Consensus 525 ~~L~~vl~~l~~~l~~p--~v~~~Aa~al~~lc~~c~~~l~~p~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~vi~~~ 602 (930)
.|...+++.++..+.++ .|+.+|..|+..||+.|......++..+.+..+...+.+. +...|...+..++.++...
T Consensus 100 ~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k--~~~vk~~al~~l~~~~~~~ 177 (249)
T 2qk1_A 100 DYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHK--TPQIRMECTQLFNASMKEE 177 (249)
T ss_dssp HHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCS--SHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCC--ChHHHHHHHHHHHHHHHHc
Confidence 68899999999999974 4899999999999999865332111233444555555433 5688999999999999776
Q ss_pred Cc
Q 002370 603 SN 604 (930)
Q Consensus 603 p~ 604 (930)
+.
T Consensus 178 ~~ 179 (249)
T 2qk1_A 178 KD 179 (249)
T ss_dssp CS
T ss_pred CC
Confidence 64
No 25
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=96.95 E-value=0.017 Score=58.76 Aligned_cols=154 Identities=15% Similarity=0.066 Sum_probs=101.1
Q ss_pred CCCchhhhHHHHHHHhhhhccccCCCccchhHHHHHHHHhc-cCchhhhhhHHHHHHHHHHHHHHhhHHHHHhc-hhchH
Q 002370 451 PIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLS-ASRSEELKGFMHIVYRSLADVIGSYSKWISAF-QTNAR 528 (930)
Q Consensus 451 ~~~W~~~Ea~L~~l~~iae~~~~~~~~~~l~~i~~~l~~l~-~~~~~~~~~~~~v~~~t~~~~ig~y~~wl~~~-p~~L~ 528 (930)
+.+|....+++.++..+.++.++-.. ..+..+++.+..+. .++... ++..+ +.++|.++.-+... ..|.+
T Consensus 26 s~~w~~R~~a~~~L~~l~~~~~~~~~-~~~~~i~~~L~~~l~kd~~~~------V~~~a-~~~l~~la~~l~~~~~~~~~ 97 (242)
T 2qk2_A 26 EKKWTLRKESLEVLEKLLTDHPKLEN-GEYGALVSALKKVITKDSNVV------LVAMA-GKCLALLAKGLAKRFSNYAS 97 (242)
T ss_dssp CSSHHHHHHHHHHHHHHHHHCSSBCC-CCCHHHHHHHHHHHHHCSCHH------HHHHH-HHHHHHHHHHHGGGGHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHccCCCCCC-CCHHHHHHHHHHHhccCCCHH------HHHHH-HHHHHHHHHHHhhhHHHHHH
Confidence 46799999999999999887543221 12466777666554 354432 55545 69999999765432 25788
Q ss_pred HHHHHHHHhccccc--hhHHHHHHHHHHHHHhhcccCCCccHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHccCCchH
Q 002370 529 PLLLFLAAGISEAV--SSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGSVSNKE 606 (930)
Q Consensus 529 ~vl~~l~~~l~~p~--v~~~Aa~al~~lc~~c~~~l~~p~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~vi~~~p~~~ 606 (930)
.+++.++..+.++. ++.+|+.|+..++..+. ....+-.+...+.. -+...|..++..++.++....++.
T Consensus 98 ~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~-------~~~ll~~l~~~l~~--~~~~vr~~~l~~l~~~l~~~~~~~ 168 (242)
T 2qk2_A 98 ACVPSLLEKFKEKKPNVVTALREAIDAIYASTS-------LEAQQESIVESLSN--KNPSVKSETALFIARALTRTQPTA 168 (242)
T ss_dssp HHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC-------HHHHHHHHHHHTTC--SCHHHHHHHHHHHHHHHTTCCGGG
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHcC--CChHHHHHHHHHHHHHHHHcCCCC
Confidence 89999999999854 89999999999987432 22222333333322 257889999999999988764332
Q ss_pred HHHHHHHHHHHHHHH
Q 002370 607 LKNNLLARLLSSSYE 621 (930)
Q Consensus 607 ~~~~~l~~ll~p~~~ 621 (930)
....++..++..+..
T Consensus 169 ~~~~~l~~l~p~l~~ 183 (242)
T 2qk2_A 169 LNKKLLKLLTTSLVK 183 (242)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHH
Confidence 123445555444433
No 26
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=96.95 E-value=0.97 Score=52.79 Aligned_cols=466 Identities=12% Similarity=0.052 Sum_probs=220.7
Q ss_pred CCChHHHHHHHHHHHHhhc-ChHHHH-HHHHhhccCCCCCCccchhHHhhhHHhHHHhccCcCCCChHHHHHHHHHHHHH
Q 002370 19 DTESCNRVAANQWLVQFQQ-TDAAWE-IATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKDALLNALLVA 96 (930)
Q Consensus 19 ~~d~~~~~~A~~~L~~fq~-s~~aW~-~~~~LL~~~~~~~~~~~~v~ffaA~tL~~ki~~~~~~l~~e~~~~lr~~Ll~~ 96 (930)
++|.+.|+-.--++..+-+ .++--. .+..|...-. +.++.+|-.|+.+|-+-. +++....+-..+...
T Consensus 81 s~~~~~Krl~Yl~~~~~~~~~~e~~~l~in~l~kDL~---~~n~~vr~lAL~~L~~i~-------~~~~~~~l~~~l~~~ 150 (618)
T 1w63_A 81 SQKFTDKRIGYLGAMLLLDERQDVHLLMTNCIKNDLN---HSTQFVQGLALCTLGCMG-------SSEMCRDLAGEVEKL 150 (618)
T ss_dssp SSSHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHS---CSSSHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcC---CCCHhHHHHHHHHHHhcC-------CHHHHHHHHHHHHHH
Confidence 4455556666556665443 344222 2222222111 235677877777775433 234444555555555
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHhcc-cCchHHHHHHHhhcccCCCchhHHHHHHHhhhhcccccccccccCCCHHHH
Q 002370 97 AKRFSSGPPQLLTQICLALSALILRAVE-HGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDSQASDCNISSAHR 175 (930)
Q Consensus 97 l~~~~~~~~~v~~kL~~~La~l~~~~~~-W~~~i~~li~~~~~~~~~~~~~~~~L~iL~~l~EE~~~~~~~~~~l~~~~r 175 (930)
+. ..++.||++-+.++..++...++ =+++++.+...+... ++......+..|..+.+.- .
T Consensus 151 L~---~~~~~VRk~A~~al~~l~~~~p~~v~~~~~~l~~lL~D~--d~~V~~~Al~~L~~i~~~~-----------~--- 211 (618)
T 1w63_A 151 LK---TSNSYLRKKAALCAVHVIRKVPELMEMFLPATKNLLNEK--NHGVLHTSVVLLTEMCERS-----------P--- 211 (618)
T ss_dssp HH---SCCHHHHHHHHHHHHHHHHHCGGGGGGGGGGTTTSTTCC--CHHHHHHHHHHHHHHCCSH-----------H---
T ss_pred Hc---CCCHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHhCCC--CHhHHHHHHHHHHHHHHhC-----------h---
Confidence 54 46789999999999999876541 122333333333321 2223334455555443221 0
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHhhccCCC--C-CcchhhhHHHHHHHHHHHHHhccccccCcchhcccchHHHHHHhcCC
Q 002370 176 SQYGQELLSHTPMVVEFLMQQSDKRFDGG--V-PVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSLQV 252 (930)
Q Consensus 176 ~~~~~~l~~~~~~v~~~l~~~l~~~~~~~--~-~~~~~~~~~~~l~c~~sWi~~~~~~~~~~~~i~~~~ll~~l~~~L~~ 252 (930)
.....+....+.++..|.+......+++ . +.+++-.+..+++++....... ++. ...+++.+...+..
T Consensus 212 -~~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~------~~~--~~~~~~~L~~l~~~ 282 (618)
T 1w63_A 212 -DMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRND------DDS--SEAMNDILAQVATN 282 (618)
T ss_dssp -HHHHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTC------HHH--HHTTHHHHHHHHHT
T ss_pred -HHHHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCC------HHH--HHHHHHHHHHHHhc
Confidence 1123344566777777776544321110 0 0023445667777777655421 111 12344444444321
Q ss_pred --------CCcHHHHHHHHHHHHhccCChhHHHHhhhhh-hHHhhhchhhccCcHhHHhhHHHHHHHHHHhhhHHHHhcC
Q 002370 253 --------QSSFDVAIEVLVELVGRHEGLPQALLCRVPF-LKELLLLPALTDGDEKVIGGLACLMSEIGQAAPSLIVEAS 323 (930)
Q Consensus 253 --------~~~~~~a~~~l~ei~~~~~~~~~~l~~~~~~-l~~~~~~~~~~~~d~d~~~~l~~l~~~~~e~~~~~l~~~~ 323 (930)
..+.-.|+.++.. .... ..+...... +.. .+.+.|.+........+..++..++..+.
T Consensus 283 ~~~~~~~~~aV~~ea~~~i~~---l~~~--~~l~~~a~~~L~~-----~L~~~d~~vr~~aL~~L~~i~~~~p~~~~--- 349 (618)
T 1w63_A 283 TETSKNVGNAILYETVLTIMD---IKSE--SGLRVLAINILGR-----FLLNNDKNIRYVALTSLLKTVQTDHNAVQ--- 349 (618)
T ss_dssp SCCSSTHHHHHHHHHHHHHHH---SCCC--HHHHHHHHHHHHH-----HHTCSSTTTHHHHHHHHHHHHHHHHHHHG---
T ss_pred cccccchHHHHHHHHHHHHHh---cCCC--HHHHHHHHHHHHH-----HHhCCCCchHHHHHHHHHHHHhhCHHHHH---
Confidence 1222234444433 2211 111111111 111 22334444332233444555555444332
Q ss_pred hhHHHHHHHHHhcccCCCCCchhhhhcHHHHHHHHHHhhccchhhhhhhhhhhhhcHHHHHHHHHHHHHHhccCCCCCCC
Q 002370 324 PEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFND 403 (930)
Q Consensus 324 ~~~~~ll~~ll~~~~~p~~d~~v~~~~~~fW~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Ll~~l~~k~~~p~~~~~~ 403 (930)
.....++.|...+ |..|...+++--+.+.+. ....+++.+++. .+. +
T Consensus 350 ----~~~~~i~~~l~d~--d~~Ir~~alelL~~l~~~----------------~nv~~iv~eL~~----~l~---~---- 396 (618)
T 1w63_A 350 ----RHRSTIVDCLKDL--DVSIKRRAMELSFALVNG----------------NNIRGMMKELLY----FLD---S---- 396 (618)
T ss_dssp ----GGHHHHHHGGGSS--CHHHHHHHHHHHHHHCCS----------------SSTHHHHHHHHH----HHH---H----
T ss_pred ----HHHHHHHHHccCC--ChhHHHHHHHHHHHHccc----------------ccHHHHHHHHHH----HHH---h----
Confidence 2345666777776 677888888765554321 012233333332 221 0
Q ss_pred CCCCCCCchHHHHHHHHHHHHHHHHHhcCc--hHHHHHHHHhhhcCCCCCCCchhhhHHHHHHHhhhhccccCCCccchh
Q 002370 404 DGMVDLPDGLVQFRMNLVELLVDICQLLRS--ATFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFS 481 (930)
Q Consensus 404 ~~~~d~~d~f~~~R~~~~d~l~~~~~~l~~--~~~l~~~~~~~~~~~~~~~~W~~~Ea~L~~l~~iae~~~~~~~~~~l~ 481 (930)
. + .+||..+...+..++.-..+ ..++..+++.+... .++-.-| ++.++..+....++ -....+.
T Consensus 397 -~-----d--~e~r~~~v~~I~~la~k~~~~~~~~v~~ll~lL~~~----~~~v~~~-~~~~l~~ii~~~p~-l~~~~v~ 462 (618)
T 1w63_A 397 -C-----E--PEFKADCASGIFLAAEKYAPSKRWHIDTIMRVLTTA----GSYVRDD-AVPNLIQLITNSVE-MHAYTVQ 462 (618)
T ss_dssp -C-----C--HHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHT----GGGSCSS-HHHHHHHHHHHSCS-THHHHHH
T ss_pred -C-----C--HHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHhc----cchhHHH-HHHHHHHHHhcChh-HHHHHHH
Confidence 0 1 25777777777777665432 23566555443221 1122222 23344444333221 1101123
Q ss_pred HHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHh-----------chhchHHHHHHHHHh-ccccchhHHHHH
Q 002370 482 VIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISA-----------FQTNARPLLLFLAAG-ISEAVSSNACAS 549 (930)
Q Consensus 482 ~i~~~l~~l~~~~~~~~~~~~~v~~~t~~~~ig~y~~wl~~-----------~p~~L~~vl~~l~~~-l~~p~v~~~Aa~ 549 (930)
.+...+..-..+.. +.. .+.|++|.|++.+.. +|.-+...+.-++.. ..++.++..+..
T Consensus 463 ~L~~~l~~~~~~~~--------~~~-~~~wilGEy~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vr~~~lt 533 (618)
T 1w63_A 463 RLYKAILGDYSQQP--------LVQ-VAAWCIGEYGDLLVSGQCEEEEPIQVTEDEVLDILESVLISNMSTSVTRGYALT 533 (618)
T ss_dssp HHHHHHHHCCSCSH--------HHH-HHHHHHHHHHHHHTTCCCSSSCCCCCCHHHHHHHHHHHHHSTTCCHHHHHHHHH
T ss_pred HHHHHHhcccccHH--------HHH-HHHHHHhhhHHHhcccccccccccCCCHHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence 33333332111121 223 346999999998854 344445555555544 345668999999
Q ss_pred HHHHHHHHhhcccCCCccHHHHHHHHHHHHhcCCChhhHHHHHHHHHHH
Q 002370 550 ALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLI 598 (930)
Q Consensus 550 al~~lc~~c~~~l~~p~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~v 598 (930)
|+.++...+. ...+.+..+..... ...+.+.|.+-++....+
T Consensus 534 a~~Kl~~~~~------~~~~~l~~~L~~~~-~~~d~evrdRA~~y~~ll 575 (618)
T 1w63_A 534 AIMKLSTRFT------CTVNRIKKVVSIYG-SSIDVELQQRAVEYNALF 575 (618)
T ss_dssp HHHHHHTTCS------SCHHHHHHHHHHHT-TCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCc------chHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHH
Confidence 9999887553 23445555554443 334566676666654443
No 27
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=96.80 E-value=1.8 Score=53.61 Aligned_cols=290 Identities=9% Similarity=0.039 Sum_probs=147.3
Q ss_pred HHHHhhHHHHHhchhchHHHHHHHHHhc----ccc--chhHHHHHHHHHHHHHhhcccCCCccHHHHHHHHHHHHhcCCC
Q 002370 511 DVIGSYSKWISAFQTNARPLLLFLAAGI----SEA--VSSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLP 584 (930)
Q Consensus 511 ~~ig~y~~wl~~~p~~L~~vl~~l~~~l----~~p--~v~~~Aa~al~~lc~~c~~~l~~p~~~~~l~~~~~~l~~~~l~ 584 (930)
.++...++-+ ..+.++.+++++-..+ .++ ....+|..++..+++.|..... ..++.+......+.. -.
T Consensus 429 ~~L~~~~~~~--~~~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~~--~~l~~l~~~l~~l~~--~~ 502 (963)
T 2x19_B 429 DTLMYVYEML--GAELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYS--DVVPGLIGLIPRISI--SN 502 (963)
T ss_dssp HHHHHHHHHH--THHHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSCC--SHHHHHHHHGGGSCC--CS
T ss_pred HHHHHHHHHc--cHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchhh--HHHHHHHHHHHhCCC--Cc
Confidence 5555544422 3456777777777666 332 3678899999999998876432 244444432221111 12
Q ss_pred hhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCchhhHHHHHHhHHHHHhhhccccccc
Q 002370 585 LEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLP 664 (930)
Q Consensus 585 ~~~~~~l~eai~~vi~~~p~~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~l~~i~~~l~ 664 (930)
...+...+..+|.....+.. ..+++..+ +..+-+.+.. ...+ ..++..+.++.. ...
T Consensus 503 ~~vr~~~~~~l~~~~~~l~~---~~~~l~~v----l~~l~~~l~~---~~V~----------~~A~~al~~l~~---~~~ 559 (963)
T 2x19_B 503 VQLADTVMFTIGALSEWLAD---HPVMINSV----LPLVLHALGN---PELS----------VSSVSTLKKICR---ECK 559 (963)
T ss_dssp HHHHHHHHHHHHHTHHHHHH---CHHHHTTT----HHHHHHHTTC---GGGH----------HHHHHHHHHHHH---HTG
T ss_pred HHHHHHHHHHHHHHHHHHHh---CHHHHHHH----HHHHHHHhCC---chHH----------HHHHHHHHHHHH---HHH
Confidence 33455555666555432211 12334444 4443333321 0011 123444544432 211
Q ss_pred ccCCCCCCCCchHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHhh-hhhHhhHHHHHHHHHHhhhhh--CC
Q 002370 665 VPLPTNPAGDDPIFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSG-QHFVTLLPQVLDCLSTNFVSF--QN 741 (930)
Q Consensus 665 ~~~~~~~~~~~p~~~~~~~i~~~l~~i~~~~~~~~~~v~e~~c~~~~~~i~~l~-~~~~p~l~~l~~~l~~~~~~~--~~ 741 (930)
.. ..+++..++..+..++. ...-+.+..+.+..++..++...+ ....+++..+++.+...+... .+
T Consensus 560 ~~----------l~p~~~~il~~l~~~l~-~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~ 628 (963)
T 2x19_B 560 YD----------LPPYAANIVAVSQDVLM-KQIHKTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEI 628 (963)
T ss_dssp GG----------CTTTHHHHHHHHHHHHH-TTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HH----------HHhhHHHHHHHHHHHhc-cCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 11 11234555555555554 222245667777888888776664 556666666666555544321 01
Q ss_pred --------cchHHHHHHHHHHHhcCCCC----------------ccchHHHHHHHHhhhHHHHHhhcCCCCCCCCchHHH
Q 002370 742 --------HECYIRTASVVIEEFGHKDE----------------YGPLFVTTFERFSQAASVRALNSSYICDQEPDLVEA 797 (930)
Q Consensus 742 --------~~~~L~l~~~li~~fg~~~~----------------~~~~l~~l~~~l~~~~~~~~l~~~~~~~~~pD~~~~ 797 (930)
....+.+++.++..++.... ....+...+..+.... ...+.. ..+++++.+.
T Consensus 629 ~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~---~~~~~~v~e~ 704 (963)
T 2x19_B 629 PNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLI-QKVLSK---WLNDAQVVEA 704 (963)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHHHHHHH-HHHHHH---HTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHHHHHHH-HHHHHh---ccCchHHHHH
Confidence 11346667777777764211 1122333333332221 122221 1356789999
Q ss_pred HHHHHHHHHhhhhHHHHhhchhchHHHHHHHHHhhcc-CchhHHHHHHHHHHHHHh
Q 002370 798 YTNFASTFVRTSRKEVLAASGALLEVSFQKAAICCTA-MHRGAALAAMSYLSCFLE 852 (930)
Q Consensus 798 ~f~l~~~~l~~~p~~~~~s~~~~l~~~l~~~l~~l~~-~e~~~~~a~~~fl~~li~ 852 (930)
.+.++.+++...+..+. ++++.++...+..... ++. ..+.++..++.
T Consensus 705 ~~~~l~~~~~~~~~~~~----~~l~~~~~~l~~~~~~~~~~----~~l~l~~~li~ 752 (963)
T 2x19_B 705 VCAIFEKSVKTLLDDFA----PMVPQLCEMLGRMYSTIPQA----SALDLTRQLVH 752 (963)
T ss_dssp HHHHHHHHHHHSSSTTG----GGHHHHHHHHHHHHHHSCCH----HHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccccc----ccHHHHHHHHHHHHHcCCcc----HHHHHHHHHHH
Confidence 99999998877665543 3566666666655543 232 34455555555
No 28
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=96.64 E-value=0.08 Score=59.20 Aligned_cols=334 Identities=12% Similarity=0.026 Sum_probs=169.1
Q ss_pred hhhhHHHHHHHHHHHHHhccccccCcchhccc-chHHHHHHhcCCC---CcHHHHHHHHHHHHhccCChhHHHH-hhhhh
Q 002370 209 LHDRNRKILRCLLSWVRAGCFTEISQGSLAAH-PLLNFVFNSLQVQ---SSFDVAIEVLVELVGRHEGLPQALL-CRVPF 283 (930)
Q Consensus 209 ~~~~~~~~l~c~~sWi~~~~~~~~~~~~i~~~-~ll~~l~~~L~~~---~~~~~a~~~l~ei~~~~~~~~~~l~-~~~~~ 283 (930)
+..++..++.++..-+.... .-+...+... .+++.+.+.|.++ +++..|+.++..+.....+..+.+. ...+
T Consensus 33 ~~~~r~~A~~~L~~l~~~~~--~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i- 109 (450)
T 2jdq_A 33 SPEQQLSATQKFRKLLSKEP--NPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAV- 109 (450)
T ss_dssp CHHHHHHHHHHHHHHHHSSS--SCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHH-
T ss_pred CHHHHHHHHHHHHHHhcCCC--CCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCH-
Confidence 45688899999988775221 1122233344 7899999988765 5677899999988864432222221 1111
Q ss_pred hHHhhhchhhccCcHhHHhhHHHHHHHHHHhhh---HHHHhcChhHHHHHHHHHhcccCCCCCchhhhhcHHHHHHHHHH
Q 002370 284 LKELLLLPALTDGDEKVIGGLACLMSEIGQAAP---SLIVEASPEALALADALLSCVAFPSEDWEIADSTLQFWSTLASY 360 (930)
Q Consensus 284 l~~~~~~~~~~~~d~d~~~~l~~l~~~~~e~~~---~~l~~~~~~~~~ll~~ll~~~~~p~~d~~v~~~~~~fW~~l~~~ 360 (930)
+.+. ..+.+++.+.....+..+..++.... ..+.+ ...++.++.+..... +.++...+...+..+...
T Consensus 110 --~~L~-~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~-----~~~i~~L~~~l~~~~-~~~v~~~a~~~L~~l~~~ 180 (450)
T 2jdq_A 110 --PIFI-ELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLD-----CNILPPLLQLFSKQN-RLTMTRNAVWALSNLCRG 180 (450)
T ss_dssp --HHHH-HHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHH-----TTCHHHHHHHTTSCC-CHHHHHHHHHHHHHHHCC
T ss_pred --HHHH-HHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHH-----CCCHHHHHHHhcCCC-CHHHHHHHHHHHHHHhCC
Confidence 1111 23445667776666777776665421 11221 124556666665421 566777777766666532
Q ss_pred hhccchhhhhhhhhhhhhcHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHhcCc-------
Q 002370 361 ILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRS------- 433 (930)
Q Consensus 361 l~~~~~~~~~~~~~~~~~~~~~~~~Ll~~l~~k~~~p~~~~~~~~~~d~~d~f~~~R~~~~d~l~~~~~~l~~------- 433 (930)
- +.. ...... ..+++.++..+.- . + ...|.....++.+++.....
T Consensus 181 ~---~~~------~~~~~~----~~~l~~L~~~l~~--------~-----~--~~v~~~a~~~L~~l~~~~~~~~~~~~~ 232 (450)
T 2jdq_A 181 K---SPP------PEFAKV----SPCLNVLSWLLFV--------S-----D--TDVLADACWALSYLSDGPNDKIQAVID 232 (450)
T ss_dssp S---SSC------CCGGGT----GGGHHHHHHHTTC--------C-----C--HHHHHHHHHHHHHHTSSSHHHHHHHHH
T ss_pred C---CCC------CCHHHH----HHHHHHHHHHHcc--------C-----C--HHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 1 000 000111 2233333333321 1 1 13455555566555432100
Q ss_pred hHHHHHHHHhhhcCCCCCCCchhhhHHHHHHHhhhhccccCCCccch-hHHHHHHHHhccCchhhhhhHHHHHHHHHHHH
Q 002370 434 ATFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDF-SVIMQLVAVLSASRSEELKGFMHIVYRSLADV 512 (930)
Q Consensus 434 ~~~l~~~~~~~~~~~~~~~~W~~~Ea~L~~l~~iae~~~~~~~~~~l-~~i~~~l~~l~~~~~~~~~~~~~v~~~t~~~~ 512 (930)
...+..++..+ .+.+|.-.+.++.+++.++...+...... + ..+++.+..+..++... ++..+ +++
T Consensus 233 ~~~i~~L~~ll-----~~~~~~v~~~a~~~L~~l~~~~~~~~~~~-~~~~~l~~L~~ll~~~~~~------vr~~a-~~~ 299 (450)
T 2jdq_A 233 AGVCRRLVELL-----MHNDYKVVSPALRAVGNIVTGDDIQTQVI-LNCSALQSLLHLLSSPKES------IKKEA-CWT 299 (450)
T ss_dssp TTTHHHHHHHT-----TCSCHHHHHHHHHHHHHHTTSCHHHHHHH-HTTTHHHHHHHHTTCSSHH------HHHHH-HHH
T ss_pred cCcHHHHHHHH-----CCCchhHHHHHHHHHHHHhhCChHHHHHH-HHCccHHHHHHHHcCCCHH------HHHHH-HHH
Confidence 01222233222 23569999999999999986543110000 0 12334444444444322 45544 588
Q ss_pred HHhhHHHHHhch-hch-HHHHHHHHHhccc--cchhHHHHHHHHHHHHHhhc-c---cCCCccHHHHHHHHHHHHhcCCC
Q 002370 513 IGSYSKWISAFQ-TNA-RPLLLFLAAGISE--AVSSNACASALRKICEDASA-L---IDEPSNLEILMWIGEALEKRHLP 584 (930)
Q Consensus 513 ig~y~~wl~~~p-~~L-~~vl~~l~~~l~~--p~v~~~Aa~al~~lc~~c~~-~---l~~p~~~~~l~~~~~~l~~~~l~ 584 (930)
+|..+..-..+- ..+ ..+++.++..+.+ ++++..|+.++.+++..+.. . +.....++.|.. .+... +
T Consensus 300 L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~---ll~~~--~ 374 (450)
T 2jdq_A 300 ISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCD---LLTVM--D 374 (450)
T ss_dssp HHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHH---GGGSS--C
T ss_pred HHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHH---HhcCC--C
Confidence 888774211111 111 1445555555554 56999999999999976321 1 100011222222 22211 4
Q ss_pred hhhHHHHHHHHHHHHc
Q 002370 585 LEDEEEVVGAISLILG 600 (930)
Q Consensus 585 ~~~~~~l~eai~~vi~ 600 (930)
.+.+...+++++.++.
T Consensus 375 ~~v~~~a~~aL~~l~~ 390 (450)
T 2jdq_A 375 SKIVQVALNGLENILR 390 (450)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5666777777777664
No 29
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=96.24 E-value=0.87 Score=52.88 Aligned_cols=414 Identities=11% Similarity=0.051 Sum_probs=200.1
Q ss_pred ccCCChHHHHHHHHHHHHhhcChHHHHH----HHHhhccCCCCCCccchhHHhhhHHhHHHhccCcCCCChHHHHHHHHH
Q 002370 17 NHDTESCNRVAANQWLVQFQQTDAAWEI----ATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKDALLNA 92 (930)
Q Consensus 17 y~~~d~~~~~~A~~~L~~fq~s~~aW~~----~~~LL~~~~~~~~~~~~v~ffaA~tL~~ki~~~~~~l~~e~~~~lr~~ 92 (930)
..++|+..|..|-..|-.+. +++.+.. ...+|.++ ++.||.-|+..+.+-....-+.++. ..
T Consensus 95 L~~~n~~ir~~AL~~L~~i~-~~~~~~~l~~~l~~~L~d~------~~~VRk~A~~al~~i~~~~p~~~~~-------~~ 160 (591)
T 2vgl_B 95 CEDPNPLIRALAVRTMGCIR-VDKITEYLCEPLRKCLKDE------DPYVRKTAAVCVAKLHDINAQMVED-------QG 160 (591)
T ss_dssp SSSSSHHHHHHHHHHHHTCC-SGGGHHHHHHHHHHHSSCS------CHHHHHHHHHHHHHHHHSSCCCHHH-------HH
T ss_pred cCCCCHHHHHHHHHHHHcCC-hHHHHHHHHHHHHHHcCCC------ChHHHHHHHHHHHHHHhhChhhccc-------cc
Confidence 34678888999988888875 6777776 55666543 4799999999998776643221211 12
Q ss_pred HHHHHHHhc-CCCHHHHHHHHHHHHHHHHHhc-c-cC----chHHHHHHHhhcccCCCchhHHHHHHHhhhhcccccccc
Q 002370 93 LLVAAKRFS-SGPPQLLTQICLALSALILRAV-E-HG----KPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDSQA 165 (930)
Q Consensus 93 Ll~~l~~~~-~~~~~v~~kL~~~La~l~~~~~-~-W~----~~i~~li~~~~~~~~~~~~~~~~L~iL~~l~EE~~~~~~ 165 (930)
++..+...- ..+..|+.....+|..+....+ . +- ..+..++..+... ++-....++++|..+..+
T Consensus 161 ~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~--~~~~q~~il~~l~~l~~~------ 232 (591)
T 2vgl_B 161 FLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNEC--TEWGQIFILDCLSNYNPK------ 232 (591)
T ss_dssp HHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHC--CHHHHHHHHHHHHTSCCC------
T ss_pred HHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCC--CchHHHHHHHHHHHhCCC------
Confidence 334443322 3456787777777777654432 1 22 2355566655431 222223445555443311
Q ss_pred cccCCCHHHHHHHHHHHHhhhhHHHHHHHHHHhhccCCCCCcchhhhHHHHHHHHHHHHHhccccccCcchhc--ccchH
Q 002370 166 SDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLA--AHPLL 243 (930)
Q Consensus 166 ~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~c~~sWi~~~~~~~~~~~~i~--~~~ll 243 (930)
... ....+++.+...+++ .+..++..|.+|+..+.... .-+.+.+. ...+.
T Consensus 233 -----~~~-----------~~~~~l~~l~~~l~~--------~~~~V~~ea~~~i~~l~~~~---~~~~~~~~~~~~~~~ 285 (591)
T 2vgl_B 233 -----DDR-----------EAQSICERVTPRLSH--------ANSAVVLSAVKVLMKFLELL---PKDSDYYNMLLKKLA 285 (591)
T ss_dssp -----SHH-----------HHHHHHHHHTTCSCS--------STTHHHHHHHHHHHHSCCSC---CBTTBSHHHHHHHTH
T ss_pred -----ChH-----------HHHHHHHHHHHHHcC--------CChHHHHHHHHHHHHHhhcc---CCCHHHHHHHHHHHH
Confidence 111 123444544444443 23467666666665543310 00111111 12233
Q ss_pred HHHHHhc-CCCCcHHHHHHHHHHHHhccCChhHHHHhhhhhhHHhhhchhhccCcHhHHhhHHHHHHHHHHhhhHHHHhc
Q 002370 244 NFVFNSL-QVQSSFDVAIEVLVELVGRHEGLPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMSEIGQAAPSLIVEA 322 (930)
Q Consensus 244 ~~l~~~L-~~~~~~~~a~~~l~ei~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~d~d~~~~l~~l~~~~~e~~~~~l~~~ 322 (930)
+.+...+ .+++++-.|++.+..++....+.... .+ . .+. ...+++....+.-+.++..++ +
T Consensus 286 ~~L~~L~~~d~~vr~~aL~~l~~i~~~~p~~~~~---~~---~-~~~--~~~~d~~~Ir~~al~~L~~l~---------~ 347 (591)
T 2vgl_B 286 PPLVTLLSGEPEVQYVALRNINLIVQKRPEILKQ---EI---K-VFF--VKYNDPIYVKLEKLDIMIRLA---------S 347 (591)
T ss_dssp HHHHHHTTSCHHHHHHHHHHHHHHHHHCCSTTTT---CT---T-TTS--CCTTSCHHHHHHHHHHHHHTC---------C
T ss_pred HHHHHHhcCCccHHHHHHHHHHHHHHhChHHHHH---HH---H-hhe--eccCChHHHHHHHHHHHHHHC---------C
Confidence 3333223 35677888999999888765432211 11 1 111 112333333332233332221 1
Q ss_pred ChhHHHHHHHHHhcccCCCCCchhhhhcHHHHHHHHHHhhccchhhhhhhhhhhhhcHHHHHHHHHHHHHHhccCCCCCC
Q 002370 323 SPEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFN 402 (930)
Q Consensus 323 ~~~~~~ll~~ll~~~~~p~~d~~v~~~~~~fW~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Ll~~l~~k~~~p~~~~~ 402 (930)
......++.-|+.+.... |.++...+..--..++ ..|.+.....++.++.-+.-+
T Consensus 348 ~~nv~~iv~~L~~~l~~~--d~~~r~~~v~aI~~la------------------~~~~~~~~~~v~~Ll~ll~~~----- 402 (591)
T 2vgl_B 348 QANIAQVLAELKEYATEV--DVDFVRKAVRAIGRCA------------------IKVEQSAERCVSTLLDLIQTK----- 402 (591)
T ss_dssp SSTHHHHHHHHHHHTTSS--CHHHHHHHHHHHHHHH------------------TTCHHHHHHHHHHHHHHHHTC-----
T ss_pred hhhHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHH------------------HhChhHHHHHHHHHHHHHccc-----
Confidence 223455666666666553 4544443332111111 123344445555555544311
Q ss_pred CCCCCCCCchHHHHHHHHHHHHHHHHHhcCc--hHHHHHHHHhhhcCCCCCCCchhhhHHHHHHHhhhhccccCCCccch
Q 002370 403 DDGMVDLPDGLVQFRMNLVELLVDICQLLRS--ATFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDF 480 (930)
Q Consensus 403 ~~~~~d~~d~f~~~R~~~~d~l~~~~~~l~~--~~~l~~~~~~~~~~~~~~~~W~~~Ea~L~~l~~iae~~~~~~~~~~l 480 (930)
+ + .-|.++...+.++..-... +..+..+...+.. ...-.-..+++|++|-.++.+.. .
T Consensus 403 --~------~--~v~~e~i~~l~~ii~~~p~~~~~~v~~L~~~l~~----~~~~~~~~~~~wilGey~~~~~~------~ 462 (591)
T 2vgl_B 403 --V------N--YVVQEAIVVIRDIFRKYPNKYESIIATLCENLDS----LDEPDARAAMIWIVGEYAERIDN------A 462 (591)
T ss_dssp --C------H--HHHHHHHHHHHHHHHHSCSSCCTTHHHHHHTTTT----CCSHHHHHHHHHHHHTTCTTCTT------H
T ss_pred --c------h--HHHHHHHHHHHHHHHHCcchHHHHHHHHHHHHHh----ccCHHHHHHHHHHHHcccccccC------H
Confidence 1 1 1223333344443322221 1134444433311 12234468889999888776642 1
Q ss_pred hHHHHHH-HHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHhchhchHHHHHHHHHhc-c---ccchhHHHHHHHHH
Q 002370 481 SVIMQLV-AVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGI-S---EAVSSNACASALRK 553 (930)
Q Consensus 481 ~~i~~~l-~~l~~~~~~~~~~~~~v~~~t~~~~ig~y~~wl~~~p~~L~~vl~~l~~~l-~---~p~v~~~Aa~al~~ 553 (930)
+.+++.+ ..+...+. .++. .++..+..++..+|+...+.+..++... . +++++.+|...++-
T Consensus 463 ~~~l~~l~~~~~~~~~-------~vr~----~~l~a~~Kl~~~~p~~~~~~i~~ll~~~~~d~~d~evrdRA~~y~~l 529 (591)
T 2vgl_B 463 DELLESFLEGFHDEST-------QVQL----TLLTAIVKLFLKKPSETQELVQQVLSLATQDSDNPDLRDRGYIYWRL 529 (591)
T ss_dssp HHHHHHHSTTCSSSCH-------HHHH----HHHHHHHHHHTTCCSTTHHHHHHHHHHHHTTCCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhccCCH-------HHHH----HHHHHHHHHHhcCchHHHHHHHHHHHHhhhcCCChHHHHHHHHHHHH
Confidence 3344322 23333222 1343 3444555555667776655556565543 2 35699998775543
No 30
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=96.15 E-value=0.2 Score=57.49 Aligned_cols=333 Identities=10% Similarity=-0.026 Sum_probs=168.3
Q ss_pred hhhhHHHHHHHHHHHHHhccccccCcchhcccchHHHHHHhcCCC---CcHHHHHHHHHHHHhccCChhHHHH-hhhhhh
Q 002370 209 LHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSLQVQ---SSFDVAIEVLVELVGRHEGLPQALL-CRVPFL 284 (930)
Q Consensus 209 ~~~~~~~~l~c~~sWi~~~~~~~~~~~~i~~~~ll~~l~~~L~~~---~~~~~a~~~l~ei~~~~~~~~~~l~-~~~~~l 284 (930)
+..++..++.++..-+.... .-+...+.....++.++..|.++ ++...|+.+|..+.....+..+.++ ...+.
T Consensus 100 ~~~~~~~A~~~L~~ll~~~~--~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~- 176 (530)
T 1wa5_B 100 DMQEQLSATVKFRQILSREH--RPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVP- 176 (530)
T ss_dssp SHHHHHHHHHHHHHHTCCSS--SCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHH-
T ss_pred CHHHHHHHHHHHHHHhCCCC--CccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHH-
Confidence 34677888888887765321 11122345667899999999764 4678899999988875432222222 11111
Q ss_pred HHhhhchhhccCcHhHHhhHHHHHHHHHHh---hhHHHHhcChhHHHHHHHHHhcccCCCCCchhhhhcHHHHHHHHHHh
Q 002370 285 KELLLLPALTDGDEKVIGGLACLMSEIGQA---APSLIVEASPEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYI 361 (930)
Q Consensus 285 ~~~~~~~~~~~~d~d~~~~l~~l~~~~~e~---~~~~l~~~~~~~~~ll~~ll~~~~~p~~d~~v~~~~~~fW~~l~~~l 361 (930)
.+. ..+.+.+.+.....+..+..++.. +...+.. ...++.|+.+...+ +.++...++.....|...-
T Consensus 177 --~Lv-~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~-----~~~l~~L~~ll~~~--~~~v~~~a~~~L~~L~~~~ 246 (530)
T 1wa5_B 177 --LFI-QLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQ-----CNAMEPILGLFNSN--KPSLIRTATWTLSNLCRGK 246 (530)
T ss_dssp --HHH-HHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHH-----TTCHHHHHHGGGSC--CHHHHHHHHHHHHHHHCCS
T ss_pred --HHH-HHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHH-----cCcHHHHHHHhccC--CHHHHHHHHHHHHHHhCCC
Confidence 111 133345667767777777766643 2222222 13456666666654 5667666666555554321
Q ss_pred hccchhhhhhhhhhhhhcHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHhcCchHH-----
Q 002370 362 LGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSATF----- 436 (930)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~Ll~~l~~k~~~p~~~~~~~~~~d~~d~f~~~R~~~~d~l~~~~~~l~~~~~----- 436 (930)
+. . .-......+++.++.-+.- . + ...|.....++.+++.. .+..
T Consensus 247 ---~~-------~---~~~~~~~~~l~~L~~lL~~--------~-----d--~~v~~~a~~~L~~L~~~--~~~~~~~~~ 296 (530)
T 1wa5_B 247 ---KP-------Q---PDWSVVSQALPTLAKLIYS--------M-----D--TETLVDACWAISYLSDG--PQEAIQAVI 296 (530)
T ss_dssp ---SS-------C---CCHHHHGGGHHHHHHHTTC--------C-----C--HHHHHHHHHHHHHHHSS--CHHHHHHHH
T ss_pred ---CC-------C---CcHHHHHhHHHHHHHHHcC--------C-----C--HHHHHHHHHHHHHHhCC--CHHHHHHHH
Confidence 00 0 0011223344444444421 1 1 23555555566555422 1111
Q ss_pred ----HHHHHHhhhcCCCCCCCchhhhHHHHHHHhhhhccccCCCccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHH
Q 002370 437 ----IQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADV 512 (930)
Q Consensus 437 ----l~~~~~~~~~~~~~~~~W~~~Ea~L~~l~~iae~~~~~~~~~~l~~i~~~l~~l~~~~~~~~~~~~~v~~~t~~~~ 512 (930)
+..++..+ . +.+|.-.+.++.+++.++.+.........-..+++.+..+..++... ++..+ +++
T Consensus 297 ~~~~v~~Lv~lL-~----~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~------vr~~A-~~a 364 (530)
T 1wa5_B 297 DVRIPKRLVELL-S----HESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKEN------IKKEA-CWT 364 (530)
T ss_dssp HTTCHHHHHHGG-G----CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHH------HHHHH-HHH
T ss_pred hcCcHHHHHHHH-C----CCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHH------HHHHH-HHH
Confidence 22222222 1 35688899999999998764321100000012333444444444322 45544 588
Q ss_pred HHhhHHHHHhchh-ch-HHHHHHHHHhcc--ccchhHHHHHHHHHHHHHhhc------ccCCCccHHHHHHHHHHHHhcC
Q 002370 513 IGSYSKWISAFQT-NA-RPLLLFLAAGIS--EAVSSNACASALRKICEDASA------LIDEPSNLEILMWIGEALEKRH 582 (930)
Q Consensus 513 ig~y~~wl~~~p~-~L-~~vl~~l~~~l~--~p~v~~~Aa~al~~lc~~c~~------~l~~p~~~~~l~~~~~~l~~~~ 582 (930)
++..+..-..+-+ ++ ..+++.|+..+. ++.++..|+.++.+++..+.. .+.....++.|..+ +..
T Consensus 365 L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~l---l~~-- 439 (530)
T 1wa5_B 365 ISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDL---LEI-- 439 (530)
T ss_dssp HHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHH---TTT--
T ss_pred HHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHH---HhC--
Confidence 8887742111101 11 123444444444 456999999999999987542 11000112222222 111
Q ss_pred CChhhHHHHHHHHHHHHcc
Q 002370 583 LPLEDEEEVVGAISLILGS 601 (930)
Q Consensus 583 l~~~~~~~l~eai~~vi~~ 601 (930)
-+...+...+.+++.++..
T Consensus 440 ~~~~v~~~al~aL~~l~~~ 458 (530)
T 1wa5_B 440 ADNRIIEVTLDALENILKM 458 (530)
T ss_dssp CCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHh
Confidence 1456667777777777643
No 31
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=95.91 E-value=4.1 Score=48.93 Aligned_cols=287 Identities=14% Similarity=0.052 Sum_probs=145.0
Q ss_pred HHHHHHHHhccCCChHHHHHHHHHHHHhhc---ChHHHHHHHHhhccCCCCCCccchhHHhhhHHhHHHhccCcCCCChH
Q 002370 8 KVAQAVHVLNHDTESCNRVAANQWLVQFQQ---TDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSA 84 (930)
Q Consensus 8 ~v~~av~~ly~~~d~~~~~~A~~~L~~fq~---s~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~ki~~~~~~l~~e 84 (930)
.+...|+.|.+ ++...|..+-+.|....+ ...+|.....+|.++ +..+|--|+.+|.+-.... +
T Consensus 116 ~i~~lv~~L~~-~~~~~r~~a~~~l~~~~~~~i~~g~ip~Lv~lL~~~------d~~vr~~A~~~L~~L~~~~------~ 182 (780)
T 2z6g_A 116 AHPTNVQRLAE-PSQMLKHAVVNLINYQDDAELATRAIPELTKLLNDE------DQVVVNKAAVMVHQLSKKE------A 182 (780)
T ss_dssp ----------C-CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS------CHHHHHHHHHHHHHHHTSH------H
T ss_pred cHHHHHHHhcC-ccHHHHHHHHHHHHhhhHHHHHhCCHHHHHHHHCCC------CHHHHHHHHHHHHHHhCCC------h
Confidence 35566666653 455566666555543211 267899889999753 3689999999997755421 1
Q ss_pred HH------HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhc-----ccCchHHHHHHHhhcccCCCchhHHHHHHH
Q 002370 85 AK------DALLNALLVAAKRFSSGPPQLLTQICLALSALILRAV-----EHGKPIEKLFYSLQNLQSQDNGNMAVLEML 153 (930)
Q Consensus 85 ~~------~~lr~~Ll~~l~~~~~~~~~v~~kL~~~La~l~~~~~-----~W~~~i~~li~~~~~~~~~~~~~~~~L~iL 153 (930)
.+ ...-..|+..+.. ..+..++...+.+|..++.... .-...++.++..+++. ++......+..|
T Consensus 183 ~~~~i~~~~~~i~~Lv~~L~~--~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~--~~~v~~~A~~aL 258 (780)
T 2z6g_A 183 SRHAIMRSPQMVSAIVRTMQN--TNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSP--VDSVLFHAITTL 258 (780)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHH
T ss_pred hHHHHHhccChHHHHHHHHcC--CCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCC--CHHHHHHHHHHH
Confidence 11 1233444444443 2356788888888888654321 1135677777777652 233344556666
Q ss_pred hhhhcccccccccccCCCHHHHHHHHHHHHhhhhHHHHHHHHHHhhccCCCCCcchhhhHHHHHHHHHHHHHhccccccC
Q 002370 154 TVLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEIS 233 (930)
Q Consensus 154 ~~l~EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~c~~sWi~~~~~~~~~ 233 (930)
..|...-. ..|.. +.. ..++..|...+.. ++..++..++.|+..|..-. .-.
T Consensus 259 ~nLa~~~~-----------~~~~~----v~~--~g~v~~Lv~lL~~--------~~~~v~~~a~~aL~~La~~~---~e~ 310 (780)
T 2z6g_A 259 HNLLLHQE-----------GAKMA----VRL--AGGLQKMVALLNK--------TNVKFLAITTDCLQILAYGN---QES 310 (780)
T ss_dssp HHHHHHST-----------THHHH----HHH--TTHHHHHHHGGGC--------CCHHHHHHHHHHHHHHHTTC---HHH
T ss_pred HHHhCCCh-----------hhHHH----HHH--cCCHHHHHHHHhc--------CCHHHHHHHHHHHHHHhcCC---hHH
Confidence 66553311 11111 110 1234444444443 23467888899999887521 001
Q ss_pred cchhcccchHHHHHHhcCCCC---cHHHHHHHHHHHHhccCChhHHHH-hhhhhhHHhhhchhhccCcHhHHhhHHHHHH
Q 002370 234 QGSLAAHPLLNFVFNSLQVQS---SFDVAIEVLVELVGRHEGLPQALL-CRVPFLKELLLLPALTDGDEKVIGGLACLMS 309 (930)
Q Consensus 234 ~~~i~~~~ll~~l~~~L~~~~---~~~~a~~~l~ei~~~~~~~~~~l~-~~~~~l~~~~~~~~~~~~d~d~~~~l~~l~~ 309 (930)
...+.....++.+...|.+.+ ....++.++..+.. .......++ ...+ +.+. ..+.+.+.+..+..+..+.
T Consensus 311 ~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~-~~~~~~~i~~~g~l---~~Ll-~lL~~~~~~~~~~a~~~L~ 385 (780)
T 2z6g_A 311 KLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGM---QALG-LHLTDPSQRLVQNCLWTLR 385 (780)
T ss_dssp HHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHT-STTHHHHHHHTTHH---HHHG-GGTTCSCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhc-ChHHHHHHHHhchH---HHHH-HHHcCCchHHHHHHHHHHH
Confidence 112334456777777777543 23456666666553 222222222 1111 1111 1334556666666666666
Q ss_pred HHHHhhhHHHHhcChhHHHHHHHHHhcccCCCCCchhhhhcH
Q 002370 310 EIGQAAPSLIVEASPEALALADALLSCVAFPSEDWEIADSTL 351 (930)
Q Consensus 310 ~~~e~~~~~l~~~~~~~~~ll~~ll~~~~~p~~d~~v~~~~~ 351 (930)
.++..... ......+++.|+.+...+ +.++.+.+.
T Consensus 386 ~L~~~~~~-----~~~~~~~i~~Lv~lL~~~--d~~vr~~A~ 420 (780)
T 2z6g_A 386 NLSDAATK-----QEGMEGLLGTLVQLLGSD--DINVVTCAA 420 (780)
T ss_dssp HHHTTCTT-----CSCCHHHHHHHHHHTTCS--CHHHHHHHH
T ss_pred HHhccchh-----hhhhhhHHHHHHHHHcCC--CHHHHHHHH
Confidence 55543321 111245677777776664 566655444
No 32
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=95.89 E-value=5.2 Score=49.37 Aligned_cols=311 Identities=8% Similarity=0.000 Sum_probs=138.9
Q ss_pred hhhhHHHHHHHhhhhccccCCCccchhHHHHHHHHhcc----CchhhhhhHHHHHHHHHHHHHHhhHHHHH--hch-h--
Q 002370 455 KEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSA----SRSEELKGFMHIVYRSLADVIGSYSKWIS--AFQ-T-- 525 (930)
Q Consensus 455 ~~~Ea~L~~l~~iae~~~~~~~~~~l~~i~~~l~~l~~----~~~~~~~~~~~v~~~t~~~~ig~y~~wl~--~~p-~-- 525 (930)
...-++.-++..++....+ ..++.+++++..... .+... . ..+.++ +.++|..++... ..+ .
T Consensus 376 s~R~aa~~~L~~l~~~~~~----~v~~~~l~~i~~~l~~~~~~~~~~--w--~~reaa-l~algaia~~~~~~~~~~~~~ 446 (960)
T 1wa5_C 376 TRRRACTDFLKELKEKNEV----LVTNIFLAHMKGFVDQYMSDPSKN--W--KFKDLY-IYLFTALAINGNITNAGVSST 446 (960)
T ss_dssp CHHHHHHHHHHHHHHHCHH----HHHHHHHHHHHHHHHHHHC----C--H--HHHHHH-HHHHHHHHBSSCCBTTBCCCB
T ss_pred CcHHHHHHHHHHHHHHcch----hHHHHHHHHHHHHHHHhccCcchh--H--HHHHHH-HHHHHHHHHHhccccCCcccc
Confidence 3344566666666665531 113445555443221 11111 0 123433 577887765321 101 1
Q ss_pred ----chHH-HHHHHHHhcc-----ccchhHHHHHHHHHHHHHhhcccCCCccHH-HHHHHHHHHHhcCCChhhHHHHHHH
Q 002370 526 ----NARP-LLLFLAAGIS-----EAVSSNACASALRKICEDASALIDEPSNLE-ILMWIGEALEKRHLPLEDEEEVVGA 594 (930)
Q Consensus 526 ----~L~~-vl~~l~~~l~-----~p~v~~~Aa~al~~lc~~c~~~l~~p~~~~-~l~~~~~~l~~~~l~~~~~~~l~ea 594 (930)
-+.+ ..+.+++.+. +|.++.+|+.++.++++... +.+++ .+..+...+... +...+.....+
T Consensus 447 ~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~-----~~~l~~~l~~l~~~L~d~--~~~V~~~A~~A 519 (960)
T 1wa5_C 447 NNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLT-----KAQLIELMPILATFLQTD--EYVVYTYAAIT 519 (960)
T ss_dssp CTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSC-----HHHHHHHHHHHHHHTTCS--CHHHHHHHHHH
T ss_pred cccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCC-----HHHHHHHHHHHHHHhCCC--ChhHHHHHHHH
Confidence 2333 2345555555 34589999999999987531 22222 223333333211 34456777777
Q ss_pred HHHHHccCC-----chHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCchhhHHHHHHhHHHHHhhhcccccccccCCC
Q 002370 595 ISLILGSVS-----NKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPT 669 (930)
Q Consensus 595 i~~vi~~~p-----~~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~l~~i~~~l~~~~~~ 669 (930)
+..++.... ..+.....+...+.++++.+.++++...+...+..... ..+..++.+.......
T Consensus 520 l~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e---------~l~~al~~vv~~~~~~--- 587 (960)
T 1wa5_C 520 IEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENE---------FLMRSIFRVLQTSEDS--- 587 (960)
T ss_dssp HHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCH---------HHHHHHHHHHHHHTTT---
T ss_pred HHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccH---------HHHHHHHHHHHHHHHh---
Confidence 777765321 00000122344555666666666654310000000001 1233343333332211
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHh--hhccchHHHHHHHHHHHHHHHHhhh-hhHhhHHHHHHHHHHhhhhh--CCcch
Q 002370 670 NPAGDDPIFALLRVFWPMLEKLFRS--EHMENGNLSTAACRALSLAIQSSGQ-HFVTLLPQVLDCLSTNFVSF--QNHEC 744 (930)
Q Consensus 670 ~~~~~~p~~~~~~~i~~~l~~i~~~--~~~~~~~v~e~~c~~~~~~i~~l~~-~~~p~l~~l~~~l~~~~~~~--~~~~~ 744 (930)
-.| +...+++.+..++.. .-+.+..+...++.++..+++..++ ...++.+.+++.+...+... ...+.
T Consensus 588 ----~~p---~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~p~~~~iL~~~~~~~~~~ 660 (960)
T 1wa5_C 588 ----IQP---LFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSEDIQEFIPY 660 (960)
T ss_dssp ----TGG---GHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTTCTTTHHH
T ss_pred ----hhh---HHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhhhHhhHHH
Confidence 123 223334444444431 1234556777788888887776443 23334444443333322211 12344
Q ss_pred HHHHHHHHHHHhcCCCCccchHHHHHHHHhhhHHHHHhhcCCCCCCCCchHHHHHHHHHHHHhhhhHHH
Q 002370 745 YIRTASVVIEEFGHKDEYGPLFVTTFERFSQAASVRALNSSYICDQEPDLVEAYTNFASTFVRTSRKEV 813 (930)
Q Consensus 745 ~L~l~~~li~~fg~~~~~~~~l~~l~~~l~~~~~~~~l~~~~~~~~~pD~~~~~f~l~~~~l~~~p~~~ 813 (930)
++.+.+.++... ..+.+.+..++..+.... .+ +.++.+.+..+.+..++...+..+
T Consensus 661 ~~~i~~~l~~~~---~~~~~~~~~~~~~l~~~~---~~-------~~~~~~~~~~~~L~~~~~~~~~~~ 716 (960)
T 1wa5_C 661 VFQIIAFVVEQS---ATIPESIKPLAQPLLAPN---VW-------ELKGNIPAVTRLLKSFIKTDSSIF 716 (960)
T ss_dssp HHHHHHHHHHHC---SSCCTTTGGGHHHHTSGG---GG-------CCTTTHHHHHHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHhc---cCCCHHHHHHHHHHcCHH---Hh-------cCCCCchhHHHHHHHHHHhChHHH
Confidence 556666666544 223333333333322111 01 122466667777777776665433
No 33
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=95.77 E-value=1.1 Score=50.99 Aligned_cols=292 Identities=9% Similarity=-0.021 Sum_probs=147.1
Q ss_pred hhhhHHHHHHHHHHHHHhccccccCcchhcccchHHHHHHhcCCC---CcHHHHHHHHHHHHhccCChhHHHHhhhhhhH
Q 002370 209 LHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSLQVQ---SSFDVAIEVLVELVGRHEGLPQALLCRVPFLK 285 (930)
Q Consensus 209 ~~~~~~~~l~c~~sWi~~~~~~~~~~~~i~~~~ll~~l~~~L~~~---~~~~~a~~~l~ei~~~~~~~~~~l~~~~~~l~ 285 (930)
+..++..++.++...+.... .-+...+.....++.+...|.++ ++...|+.+|..+.....+....++.. +..
T Consensus 87 ~~~~~~~A~~~L~~l~s~~~--~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~--g~i 162 (528)
T 4b8j_A 87 DNNLQLEATTQFRKLLSIER--SPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDH--GAV 162 (528)
T ss_dssp CHHHHHHHHHHHHHHHTCSS--SCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHT--THH
T ss_pred CHHHHHHHHHHHHHHhcCCC--CchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhC--CcH
Confidence 35678888888888876431 01233455677899999999754 567889999999887543332222211 111
Q ss_pred HhhhchhhccCcHhHHhhHHHHHHHHHHhhh---HHHHhcChhHHHHHHHHHhcc-cCCCCCchhhhhcHHHHHHHHHHh
Q 002370 286 ELLLLPALTDGDEKVIGGLACLMSEIGQAAP---SLIVEASPEALALADALLSCV-AFPSEDWEIADSTLQFWSTLASYI 361 (930)
Q Consensus 286 ~~~~~~~~~~~d~d~~~~l~~l~~~~~e~~~---~~l~~~~~~~~~ll~~ll~~~-~~p~~d~~v~~~~~~fW~~l~~~l 361 (930)
+.+. ..+.+++.+.....+..+..++.... ..+.+. ..++.|+.+. ..+ +..+...+......|...-
T Consensus 163 ~~L~-~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~-----g~l~~Ll~lL~~~~--~~~v~~~a~~~L~~L~~~~ 234 (528)
T 4b8j_A 163 PIFV-KLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLAN-----GALLPLLAQLNEHT--KLSMLRNATWTLSNFCRGK 234 (528)
T ss_dssp HHHH-HHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHT-----TCHHHHHHTCCTTC--CHHHHHHHHHHHHHHHCSS
T ss_pred HHHH-HHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHC-----CcHHHHHHHHhcCC--CHHHHHHHHHHHHHHHcCC
Confidence 1111 13345566666666666666654321 122211 2456666666 333 4556555555444444321
Q ss_pred hccchhhhhhhhhhhhhcHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHhcCchHHH----
Q 002370 362 LGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSATFI---- 437 (930)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~Ll~~l~~k~~~p~~~~~~~~~~d~~d~f~~~R~~~~d~l~~~~~~l~~~~~l---- 437 (930)
+. .-......+++.++.-+.-+ + .+.|.....++.+++. +.+...
T Consensus 235 ---~~-----------~~~~~~~~~l~~L~~lL~~~-------------~--~~v~~~a~~aL~~l~~--~~~~~~~~~~ 283 (528)
T 4b8j_A 235 ---PQ-----------PSFEQTRPALPALARLIHSN-------------D--EEVLTDACWALSYLSD--GTNDKIQAVI 283 (528)
T ss_dssp ---SC-----------CCHHHHTTHHHHHHHHTTCC-------------C--HHHHHHHHHHHHHHTS--SCHHHHHHHH
T ss_pred ---CC-----------CcHHHHHHHHHHHHHHHCCC-------------C--HHHHHHHHHHHHHHHc--CCHHHHHHHH
Confidence 00 01112233444444444211 0 1234444444544432 122111
Q ss_pred -----HHHHHhhhcCCCCCCCchhhhHHHHHHHhhhhccccCCCccchhHHHHHHHHhccCc-hhhhhhHHHHHHHHHHH
Q 002370 438 -----QKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASR-SEELKGFMHIVYRSLAD 511 (930)
Q Consensus 438 -----~~~~~~~~~~~~~~~~W~~~Ea~L~~l~~iae~~~~~~~~~~l~~i~~~l~~l~~~~-~~~~~~~~~v~~~t~~~ 511 (930)
..+...+ .+.++.-.+.++.+|+.++.+.........-..+++.+..+..++ ... ++..+ ++
T Consensus 284 ~~g~v~~Lv~lL-----~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~------v~~~A-~~ 351 (528)
T 4b8j_A 284 EAGVCPRLVELL-----LHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKS------IKKEA-CW 351 (528)
T ss_dssp HTTCHHHHHHHT-----TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHH------HHHHH-HH
T ss_pred HcCHHHHHHHHH-----cCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHH------HHHHH-HH
Confidence 2222222 134578889999999998764321100000011233333333333 222 44434 58
Q ss_pred HHHhhHHHHHhchhchH-----HHHHHHHHhcc--ccchhHHHHHHHHHHHHHh
Q 002370 512 VIGSYSKWISAFQTNAR-----PLLLFLAAGIS--EAVSSNACASALRKICEDA 558 (930)
Q Consensus 512 ~ig~y~~wl~~~p~~L~-----~vl~~l~~~l~--~p~v~~~Aa~al~~lc~~c 558 (930)
+++..+.. +++... .+++.++..+. ++.++..|+.+|.+++...
T Consensus 352 ~L~nl~~~---~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~ 402 (528)
T 4b8j_A 352 TISNITAG---NKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGG 402 (528)
T ss_dssp HHHHHHTS---CHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHCC---CHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCC
Confidence 88887641 222111 23344444443 4569999999999999763
No 34
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=95.31 E-value=1.9 Score=53.30 Aligned_cols=309 Identities=11% Similarity=0.041 Sum_probs=157.0
Q ss_pred HHHHHHHHHHhhHHHHHh--chhchHHHHHHHHHhccc-----cc--hhHHHHHHHHHHHHHhhcccCCCccHHH-HHHH
Q 002370 505 VYRSLADVIGSYSKWISA--FQTNARPLLLFLAAGISE-----AV--SSNACASALRKICEDASALIDEPSNLEI-LMWI 574 (930)
Q Consensus 505 ~~~t~~~~ig~y~~wl~~--~p~~L~~vl~~l~~~l~~-----p~--v~~~Aa~al~~lc~~c~~~l~~p~~~~~-l~~~ 574 (930)
+-++ ++.+|+-++=... ...+++.+++++++-+.+ +. ++..++..+-++|+=.+.+ |.+++. +..+
T Consensus 470 ~EA~-~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~---~~~L~~vl~~L 545 (1023)
T 4hat_C 470 INTL-SWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAH---WNFLRTVILKL 545 (1023)
T ss_dssp HHHH-HHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHC---HHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhcc---HHHHHHHHHHH
Confidence 4434 6899987763321 345889999988876642 32 5667788888888776543 334433 3333
Q ss_pred HHHHHhcCCChhhHHHHHHHHHHHHccCCchHHHHHHH--------HHHHHHHHHHHHhhhhccCCCCCCCCchhhHHHH
Q 002370 575 GEALEKRHLPLEDEEEVVGAISLILGSVSNKELKNNLL--------ARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQIL 646 (930)
Q Consensus 575 ~~~l~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~~l--------~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l 646 (930)
.+.+... .+..+.....++..+.+.-. ..+ ..++.++++.+.++.... .+.
T Consensus 546 ~~~l~~~--~~~v~~~A~~al~~l~~~c~------~~l~~~~~~e~~p~~~~il~~l~~~~~~l-------~~~------ 604 (1023)
T 4hat_C 546 FEFMHET--HEGVQDMACDTFIKIVQKCK------YHFVIQQPRESEPFIQTIIRDIQKTTADL-------QPQ------ 604 (1023)
T ss_dssp HHHTTCS--CHHHHHHHHHHHHHHHHHHT------HHHHSCCTTCSSCHHHHHHHTHHHHHTTS-------CHH------
T ss_pred HHHhhcC--CHHHHHHHHHHHHHHHHHHH------HHhhccCCCCCchhHHHHHHHHHHHHHhC-------CHH------
Confidence 3433111 13345555555555553211 111 124455555555555421 111
Q ss_pred HHhHHHHHhhhcccccccccCCCCCCCCchHHHHHHHHHHHHHHHHHh---hhc------cchHHH---HHHHHHHHHHH
Q 002370 647 SSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFRS---EHM------ENGNLS---TAACRALSLAI 714 (930)
Q Consensus 647 ~~~~~~l~~l~~i~~~l~~~~~~~~~~~~p~~~~~~~i~~~l~~i~~~---~~~------~~~~v~---e~~c~~~~~~i 714 (930)
......+.++++.+..... ......++.+++.+...... .+. .|.+.+ -.+++++..+.
T Consensus 605 -~~~~lyeai~~vi~~~~~~--------~~~~~~l~~L~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~l~~il~~~~~v~ 675 (1023)
T 4hat_C 605 -QVHTFYKACGIIISEERSV--------AERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVC 675 (1023)
T ss_dssp -HHHHHHHHHHHHHTTCCSH--------HHHHHHHHHHTHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHhCCCH--------hhHHHHHHHHHHhHHHHHHHHHHHHhcCchhhcCHHHHHHHHHHHHHHHHHH
Confidence 1134456666666654310 11223344443333322221 111 223333 34555666677
Q ss_pred HHhhhhhHhhHHHHHHHHHHhhhhhCCc---------------ch----------HHHHHHHHHHHhcCCCCccchHHHH
Q 002370 715 QSSGQHFVTLLPQVLDCLSTNFVSFQNH---------------EC----------YIRTASVVIEEFGHKDEYGPLFVTT 769 (930)
Q Consensus 715 ~~l~~~~~p~l~~l~~~l~~~~~~~~~~---------------~~----------~L~l~~~li~~fg~~~~~~~~l~~l 769 (930)
.++|..+.|.+.++...+++.|+..... +. .|.++...+... ++......++
T Consensus 676 ~~lg~~f~~~~~~i~~~~l~~y~~~s~~i~~~~~~~g~~~~~~~~~r~~r~ik~~il~l~~~~i~~~---~~~~~~~~~~ 752 (1023)
T 4hat_C 676 TSMGADFYPQLGHIYYNMLQLYRAVSSMISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYISKA---RNLDDVVKVL 752 (1023)
T ss_dssp HHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHHHC---SCHHHHHHHT
T ss_pred HHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHhcC---CCHHHHHHHh
Confidence 7889988888888877777766543110 00 011112222111 1100011111
Q ss_pred HHHHhhhHHHHHhhcCCCCCCCCchHH-HHHHHHHHHHhhhhHHHHhhchhchHHHHHHHHHhhc---cCchhHHHHHHH
Q 002370 770 FERFSQAASVRALNSSYICDQEPDLVE-AYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICCT---AMHRGAALAAMS 845 (930)
Q Consensus 770 ~~~l~~~~~~~~l~~~~~~~~~pD~~~-~~f~l~~~~l~~~p~~~~~s~~~~l~~~l~~~l~~l~---~~e~~~~~a~~~ 845 (930)
+..+.... +.... ...|+..+ +++.+++.++++....+.+.=+.+++.+|.+++.=++ ..+|+....-++
T Consensus 753 ~~~l~~~v-l~dY~-----~~~~~~r~~~vL~l~s~iv~~~~~~~~~~~~~il~~vf~~Tl~mi~~~~~~~Pe~r~~ff~ 826 (1023)
T 4hat_C 753 VEPLLNAV-LEDYM-----NNVPDARDAEVLNCMTTVVEKVGHMIPQGVILILQSVFECTLDMINKDFTEYPEHRVEFYK 826 (1023)
T ss_dssp HHHHHHHH-HHHHH-----HSCGGGCCHHHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHSSCSSSSHHHHHHHHH
T ss_pred HHHHHHHH-HHHHH-----hCChhhccHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcccccChHHHHHHHH
Confidence 12222221 11111 23344443 5778888888877655433222577788888886665 357888999999
Q ss_pred HHHHHHhhhhh
Q 002370 846 YLSCFLEECLA 856 (930)
Q Consensus 846 fl~~li~~~~~ 856 (930)
++..++..+..
T Consensus 827 ll~~~~~~~f~ 837 (1023)
T 4hat_C 827 LLKVINEKSFA 837 (1023)
T ss_dssp HHHHHHHHCTH
T ss_pred HHHHHHHHChH
Confidence 99998887644
No 35
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=95.30 E-value=0.28 Score=56.19 Aligned_cols=293 Identities=10% Similarity=-0.031 Sum_probs=149.0
Q ss_pred hhhhHHHHHHHHHHHHHhccccccCcchhcccchHHHHHHhcC--CCCcHHHHHHHHHHHHhccCChhHHHHhhhhhhHH
Q 002370 209 LHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSLQ--VQSSFDVAIEVLVELVGRHEGLPQALLCRVPFLKE 286 (930)
Q Consensus 209 ~~~~~~~~l~c~~sWi~~~~~~~~~~~~i~~~~ll~~l~~~L~--~~~~~~~a~~~l~ei~~~~~~~~~~l~~~~~~l~~ 286 (930)
+..++..++.++..-..... . ....+.....++.+...|. +++++..|+.+|..+..........++.. +..+
T Consensus 144 ~~~v~~~A~~~L~~l~~~~~--~-~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~--~~l~ 218 (530)
T 1wa5_B 144 PEMLQLEAAWALTNIASGTS--A-QTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQC--NAME 218 (530)
T ss_dssp CHHHHHHHHHHHHHHTTSCH--H-HHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHT--TCHH
T ss_pred CHHHHHHHHHHHHHHhCCCH--H-HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHc--CcHH
Confidence 34678888888877655210 0 0112334567777777776 45778899999999886543222222210 1111
Q ss_pred hhhchhhccCcHhHHhhHHHHHHHHHHhhhHHHHhcCh--hHHHHHHHHHhcccCCCCCchhhhhcHHHHHHHHHHhhcc
Q 002370 287 LLLLPALTDGDEKVIGGLACLMSEIGQAAPSLIVEASP--EALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGL 364 (930)
Q Consensus 287 ~~~~~~~~~~d~d~~~~l~~l~~~~~e~~~~~l~~~~~--~~~~ll~~ll~~~~~p~~d~~v~~~~~~fW~~l~~~l~~~ 364 (930)
.+. ..+.+.+.+..+..+..+..++....+ ... ....+++.|+.+..++ +.++...++.....+.+.
T Consensus 219 ~L~-~ll~~~~~~v~~~a~~~L~~L~~~~~~----~~~~~~~~~~l~~L~~lL~~~--d~~v~~~a~~~L~~L~~~---- 287 (530)
T 1wa5_B 219 PIL-GLFNSNKPSLIRTATWTLSNLCRGKKP----QPDWSVVSQALPTLAKLIYSM--DTETLVDACWAISYLSDG---- 287 (530)
T ss_dssp HHH-HGGGSCCHHHHHHHHHHHHHHHCCSSS----CCCHHHHGGGHHHHHHHTTCC--CHHHHHHHHHHHHHHHSS----
T ss_pred HHH-HHhccCCHHHHHHHHHHHHHHhCCCCC----CCcHHHHHhHHHHHHHHHcCC--CHHHHHHHHHHHHHHhCC----
Confidence 111 133445666777777777666532100 000 1124667777777775 566666665554444321
Q ss_pred chhhhhhhhhhhhhcHHHH-HHHHHHHHHHhccCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHhcCchH--------
Q 002370 365 DASIAKNKKHVEDMFFSVF-SALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSAT-------- 435 (930)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~-~~Ll~~l~~k~~~p~~~~~~~~~~d~~d~f~~~R~~~~d~l~~~~~~l~~~~-------- 435 (930)
... ....++ ..+++.++..+..+ + ...|.....++..++. +.+.
T Consensus 288 ~~~----------~~~~~~~~~~v~~Lv~lL~~~-------------~--~~v~~~a~~~L~~l~~--~~~~~~~~~~~~ 340 (530)
T 1wa5_B 288 PQE----------AIQAVIDVRIPKRLVELLSHE-------------S--TLVQTPALRAVGNIVT--GNDLQTQVVINA 340 (530)
T ss_dssp CHH----------HHHHHHHTTCHHHHHHGGGCS-------------C--HHHHHHHHHHHHHHTT--SCHHHHHHHHHT
T ss_pred CHH----------HHHHHHhcCcHHHHHHHHCCC-------------C--hhhHHHHHHHHHHHHc--CCHHHHHHHHHc
Confidence 110 011111 12334444444311 0 1344444444444332 1111
Q ss_pred -HHHHHHHhhhcCCCCCCCchhhhHHHHHHHhhhhccccCCC----ccchhHHHHHHHHhccCchhhhhhHHHHHHHHHH
Q 002370 436 -FIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQ----AFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLA 510 (930)
Q Consensus 436 -~l~~~~~~~~~~~~~~~~W~~~Ea~L~~l~~iae~~~~~~~----~~~l~~i~~~l~~l~~~~~~~~~~~~~v~~~t~~ 510 (930)
.+..+...+ . +.+|...+.++++++.++.+..+.-. ...++.+++++. ++... ++..+ +
T Consensus 341 ~~l~~L~~lL-~----~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~----~~~~~------v~~~a-~ 404 (530)
T 1wa5_B 341 GVLPALRLLL-S----SPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLE----VAEYK------TKKEA-C 404 (530)
T ss_dssp THHHHHHHHT-T----CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHH----HSCHH------HHHHH-H
T ss_pred chHHHHHHHH-c----CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHh----cCCHH------HHHHH-H
Confidence 222222222 1 34699999999999999864331100 011334444332 22211 44534 5
Q ss_pred HHHHhhHHHHHhchh---chH--HHHHHHHHhccc--cchhHHHHHHHHHHHHHhhc
Q 002370 511 DVIGSYSKWISAFQT---NAR--PLLLFLAAGISE--AVSSNACASALRKICEDASA 560 (930)
Q Consensus 511 ~~ig~y~~wl~~~p~---~L~--~vl~~l~~~l~~--p~v~~~Aa~al~~lc~~c~~ 560 (930)
++++.++......|+ ++. .+++.++..+.+ +.++..|..+|.+++..+..
T Consensus 405 ~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~ 461 (530)
T 1wa5_B 405 WAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEA 461 (530)
T ss_dssp HHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhh
Confidence 888888764321012 221 256666666654 56899999999999988764
No 36
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=94.63 E-value=6.6 Score=43.17 Aligned_cols=295 Identities=15% Similarity=0.081 Sum_probs=164.7
Q ss_pred HHHhccCCChHHHHHHHHHHHHhhcC----------hHHHHHHHHhhccCCCCCCccchhHHhhhHHhHHHhccCcCCCC
Q 002370 13 VHVLNHDTESCNRVAANQWLVQFQQT----------DAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQ 82 (930)
Q Consensus 13 v~~ly~~~d~~~~~~A~~~L~~fq~s----------~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~ki~~~~~~l~ 82 (930)
++.|.+..++..|..|-..|..+-.. ..+.+....+|.++ +.++|..|+.+|.+-....
T Consensus 70 ~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~------~~~vr~~a~~~L~~l~~~~----- 138 (450)
T 2jdq_A 70 VEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSE------FEDVQEQAVWALGNIAGDS----- 138 (450)
T ss_dssp HHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCS------CHHHHHHHHHHHHHHHTTC-----
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCC------CHHHHHHHHHHHHHHccCC-----
Confidence 33343333778888888888876542 34566667777653 4699999999998766532
Q ss_pred hHHHHHHH-HHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHh-c-----ccCchHHHHHHHhhcccCCCchhHHHHHHH
Q 002370 83 SAAKDALL-NALLVAAKRFSS--GPPQLLTQICLALSALILRA-V-----EHGKPIEKLFYSLQNLQSQDNGNMAVLEML 153 (930)
Q Consensus 83 ~e~~~~lr-~~Ll~~l~~~~~--~~~~v~~kL~~~La~l~~~~-~-----~W~~~i~~li~~~~~~~~~~~~~~~~L~iL 153 (930)
++.+..+. ..++..+..... .+..++...+.+|+.++... . .-...++.++..+... ++.........|
T Consensus 139 ~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~--~~~v~~~a~~~L 216 (450)
T 2jdq_A 139 TMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVS--DTDVLADACWAL 216 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGTGGGHHHHHHHTTCC--CHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHccC--CHHHHHHHHHHH
Confidence 23333322 234444444332 45788999999999888543 1 1246778888877642 333344556666
Q ss_pred hhhhcccccccccccCCCHHHHHHHHHHHHhhhhHHHHHHHHHHhhccCCCCCcchhhhHHHHHHHHHHHHHhccccccC
Q 002370 154 TVLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEIS 233 (930)
Q Consensus 154 ~~l~EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~c~~sWi~~~~~~~~~ 233 (930)
..+.+... ..+.. +.. ..++..+...+.. ++..++..++.++..-.... .-.
T Consensus 217 ~~l~~~~~-----------~~~~~----~~~--~~~i~~L~~ll~~--------~~~~v~~~a~~~L~~l~~~~---~~~ 268 (450)
T 2jdq_A 217 SYLSDGPN-----------DKIQA----VID--AGVCRRLVELLMH--------NDYKVVSPALRAVGNIVTGD---DIQ 268 (450)
T ss_dssp HHHTSSSH-----------HHHHH----HHH--TTTHHHHHHHTTC--------SCHHHHHHHHHHHHHHTTSC---HHH
T ss_pred HHHHCCCc-----------HHHHH----HHH--cCcHHHHHHHHCC--------CchhHHHHHHHHHHHHhhCC---hHH
Confidence 66654211 11111 111 1223333334432 24568888888887765421 000
Q ss_pred cchhcccchHHHHHHhcCCC--CcHHHHHHHHHHHHhccCChhHHHHh-hhhhhHHhhhchhhccCcHhHHhhHHHHHHH
Q 002370 234 QGSLAAHPLLNFVFNSLQVQ--SSFDVAIEVLVELVGRHEGLPQALLC-RVPFLKELLLLPALTDGDEKVIGGLACLMSE 310 (930)
Q Consensus 234 ~~~i~~~~ll~~l~~~L~~~--~~~~~a~~~l~ei~~~~~~~~~~l~~-~~~~l~~~~~~~~~~~~d~d~~~~l~~l~~~ 310 (930)
...+.....++.+...|.++ .++..|+.+|..+.....+..+.++. .++ +.+. ..+.+++.+.....+..+..
T Consensus 269 ~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l---~~L~-~~l~~~~~~v~~~a~~~L~~ 344 (450)
T 2jdq_A 269 TQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIF---PALI-SILQTAEFRTRKEAAWAITN 344 (450)
T ss_dssp HHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHH---HHHH-HHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCH---HHHH-HHHhcCCHHHHHHHHHHHHH
Confidence 11133456888888888765 56778999998887644322222221 111 1111 13345566777777777776
Q ss_pred HHHh----hhHHHHhcChhHHHHHHHHHhcccCCCCCchhhhhcHHHHHHHHH
Q 002370 311 IGQA----APSLIVEASPEALALADALLSCVAFPSEDWEIADSTLQFWSTLAS 359 (930)
Q Consensus 311 ~~e~----~~~~l~~~~~~~~~ll~~ll~~~~~p~~d~~v~~~~~~fW~~l~~ 359 (930)
++.. ....+.+ ..+++.|+.+...+ +.++...++.....+.+
T Consensus 345 l~~~~~~~~~~~l~~-----~~~i~~L~~ll~~~--~~~v~~~a~~aL~~l~~ 390 (450)
T 2jdq_A 345 ATSGGSAEQIKYLVE-----LGCIKPLCDLLTVM--DSKIVQVALNGLENILR 390 (450)
T ss_dssp HHHHCCHHHHHHHHH-----HTCHHHHHHGGGSS--CHHHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHH-----CCCHHHHHHHhcCC--CHHHHHHHHHHHHHHHH
Confidence 6543 1222221 23566777777765 56676666655555443
No 37
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=94.61 E-value=3.9 Score=50.48 Aligned_cols=62 Identities=8% Similarity=0.072 Sum_probs=45.7
Q ss_pred HHHHHHHHHHhhhhHHHHhhchhchHHHHHHHHHhhc---cCchhHHHHHHHHHHHHHhhhhhhc
Q 002370 797 AYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICCT---AMHRGAALAAMSYLSCFLEECLASL 858 (930)
Q Consensus 797 ~~f~l~~~~l~~~p~~~~~s~~~~l~~~l~~~l~~l~---~~e~~~~~a~~~fl~~li~~~~~~~ 858 (930)
+++.+++.++++....+-+.=+.+++.+|++.+.=++ ...|+....-++++..+...+....
T Consensus 801 evL~l~s~iv~k~~~~~~~~~~~il~~vf~~Tl~mi~~~f~~~Pe~r~~ff~ll~~~~~~~f~~l 865 (1073)
T 3gjx_A 801 EVLSTMAIIVNKLGGHITAEIPQIFDAVFECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAF 865 (1073)
T ss_dssp HHHHHHHHHHHHHGGGTGGGHHHHHHHHHHHHHHHHSSCSSSCHHHHHHHHHHHHHHHHHCGGGT
T ss_pred HHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHhCCcccCcHHHHHHHHHHHHHHHHHhHHH
Confidence 5777888888886665443322577888888886665 5678889999999999998877643
No 38
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=94.47 E-value=3.5 Score=46.97 Aligned_cols=299 Identities=11% Similarity=0.068 Sum_probs=140.9
Q ss_pred hhhhHHHHHHHHHHHHHhccccccCcchhcccchHHHHHHhcCC---CCcHHHHHHHHHHHHhccCChhHHHHhhhhhhH
Q 002370 209 LHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSLQV---QSSFDVAIEVLVELVGRHEGLPQALLCRVPFLK 285 (930)
Q Consensus 209 ~~~~~~~~l~c~~sWi~~~~~~~~~~~~i~~~~ll~~l~~~L~~---~~~~~~a~~~l~ei~~~~~~~~~~l~~~~~~l~ 285 (930)
+.+....+++++..-+.... .-|.+.+.....++.+.+.|.. +++...|+.+|..+.....+..+.++.. +..
T Consensus 89 d~~~q~~a~~~~rklLs~~~--~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~--Gai 164 (529)
T 3tpo_A 89 NLESQLQATQAARKLLSREK--QPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDG--GAI 164 (529)
T ss_dssp CHHHHHHHHHHHHHHHTSSS--CCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHT--THH
T ss_pred CHHHHHHHHHHHHHHHcCCC--CchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHC--CCH
Confidence 44566777777776665331 2234456778899999999964 3566778899998887553322333211 001
Q ss_pred HhhhchhhccCcHhHHhhHHHHHHHHHHh---hhHHHHhcChhHHHHHHHHHhcccCCCCCchhhh-hcH--HHHHHHHH
Q 002370 286 ELLLLPALTDGDEKVIGGLACLMSEIGQA---APSLIVEASPEALALADALLSCVAFPSEDWEIAD-STL--QFWSTLAS 359 (930)
Q Consensus 286 ~~~~~~~~~~~d~d~~~~l~~l~~~~~e~---~~~~l~~~~~~~~~ll~~ll~~~~~p~~d~~v~~-~~~--~fW~~l~~ 359 (930)
+.+. ..+.+.+.+.....+..+..++.. +...+.+. ..++.++.+...+ +.+... ... -.|. +..
T Consensus 165 p~Lv-~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~-----g~i~~Ll~lL~~~--~~~~~~~~~~~~a~~~-L~n 235 (529)
T 3tpo_A 165 PAFI-SLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKH-----GAIDPLLALLAVP--DLSTLACGYLRNLTWT-LSN 235 (529)
T ss_dssp HHHH-HHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHT-----TCHHHHHHTTCSS--CGGGSCHHHHHHHHHH-HHH
T ss_pred HHHH-HHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHc-----CCcHHHHHHHhcc--chhHhHHHHHHHHHHH-HHH
Confidence 1111 134456666666666655555432 22222221 2355566666554 222111 111 1121 111
Q ss_pred HhhccchhhhhhhhhhhhhcHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHhcCchHH---
Q 002370 360 YILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSATF--- 436 (930)
Q Consensus 360 ~l~~~~~~~~~~~~~~~~~~~~~~~~Ll~~l~~k~~~p~~~~~~~~~~d~~d~f~~~R~~~~d~l~~~~~~l~~~~~--- 436 (930)
+.. ... . ..-......+++.+++-+..+. + +.+.+....+.+++. +++..
T Consensus 236 -l~~-~~~------~--~~~~~~~~~~lp~L~~LL~~~~------------~---~v~~~a~~aL~~l~~--~~~~~~~~ 288 (529)
T 3tpo_A 236 -LCR-NKN------P--APPLDAVEQILPTLVRLLHHND------------P---EVLADSCWAISYLTD--GPNERIEM 288 (529)
T ss_dssp -HHC-CCT------T--CCCHHHHHHHHHHHHHHTTSSC------------H---HHHHHHHHHHHHHHS--SCHHHHHH
T ss_pred -HHh-ccc------c--hhhHHHHhhHHHHHHHHhcCCc------------H---HHHHHHHHHHHHhhh--hhhhhHHH
Confidence 110 000 0 0111122344555544443210 1 233334334443321 11111
Q ss_pred ------HHHHHHhhhcCCCCCCCchhhhHHHHHHHhhhhccccCCCccchhHHHHHHHHhccCchhhhhhHHHHHHHHHH
Q 002370 437 ------IQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLA 510 (930)
Q Consensus 437 ------l~~~~~~~~~~~~~~~~W~~~Ea~L~~l~~iae~~~~~~~~~~l~~i~~~l~~l~~~~~~~~~~~~~v~~~t~~ 510 (930)
+..+...+ . +.++.-.+.++.+++.++.+-+.......-...++.+..+..++... ++..+ +
T Consensus 289 v~~~g~i~~Lv~lL-~----~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~------i~~~a-~ 356 (529)
T 3tpo_A 289 VVKKGVVPQLVKLL-G----ATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTN------IQKEA-T 356 (529)
T ss_dssp HHTTTCHHHHHHHH-T----CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHH------HHHHH-H
T ss_pred HHhccchHHHHHHh-c----CCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHH------HHHHH-H
Confidence 12222222 2 34677788999999988654321000000001122233344455432 44434 5
Q ss_pred HHHHhhHHHHHhchhch--HHHHHHHHHhccc--cchhHHHHHHHHHHHHHhh
Q 002370 511 DVIGSYSKWISAFQTNA--RPLLLFLAAGISE--AVSSNACASALRKICEDAS 559 (930)
Q Consensus 511 ~~ig~y~~wl~~~p~~L--~~vl~~l~~~l~~--p~v~~~Aa~al~~lc~~c~ 559 (930)
++++..+..-..+...+ ..+++.++..+.+ ++++..|+.|+.+++..+.
T Consensus 357 ~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~ 409 (529)
T 3tpo_A 357 WTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGT 409 (529)
T ss_dssp HHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCC
Confidence 88888765322221111 1345556665654 4589999999999997654
No 39
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=94.34 E-value=4.8 Score=45.55 Aligned_cols=338 Identities=11% Similarity=0.047 Sum_probs=159.3
Q ss_pred hhhhHHHHHHHHHHHHHhccccccCcchhcccchHHHHHHhcCC---CCcHHHHHHHHHHHHhccCChhHHHHhhhhhhH
Q 002370 209 LHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSLQV---QSSFDVAIEVLVELVGRHEGLPQALLCRVPFLK 285 (930)
Q Consensus 209 ~~~~~~~~l~c~~sWi~~~~~~~~~~~~i~~~~ll~~l~~~L~~---~~~~~~a~~~l~ei~~~~~~~~~~l~~~~~~l~ 285 (930)
+.+.+..+.+.+..-+.... .-|.+.+.....++.+.+.|.. +++...|+.+|..+.+...+..+.++.. +..
T Consensus 70 d~~~q~~a~~~~rklls~e~--~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~--GaI 145 (510)
T 3ul1_B 70 NLESQLQATQAARKLLSREK--QPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDG--GAI 145 (510)
T ss_dssp CHHHHHHHHHHHHHHHTCSS--CCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHT--THH
T ss_pred CHHHHHHHHHHHHHHhcCCC--CchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHC--CCH
Confidence 45667777777777765431 2244567778899999999974 3566789999999887554333333321 001
Q ss_pred HhhhchhhccCcHhHHhhHHHHHHHHHHh---hhHHHHhcChhHHHHHHHHHhcccCCCCCchhhhhcHHHHHHHHHHhh
Q 002370 286 ELLLLPALTDGDEKVIGGLACLMSEIGQA---APSLIVEASPEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYIL 362 (930)
Q Consensus 286 ~~~~~~~~~~~d~d~~~~l~~l~~~~~e~---~~~~l~~~~~~~~~ll~~ll~~~~~p~~d~~v~~~~~~fW~~l~~~l~ 362 (930)
+.+. ..+.+++.+..+.-+..+..++.. +...+.+. ..++.++.+...+ +.+.. ...+.......+.
T Consensus 146 p~Lv-~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~-----G~i~~Ll~lL~~~--~~~~~--~~~~~~~a~~~L~ 215 (510)
T 3ul1_B 146 PAFI-SLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKH-----GAIDPLLALLAVP--DLSTL--ACGYLRNLTWTLS 215 (510)
T ss_dssp HHHH-HHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHT-----TCHHHHHHHTCSS--CGGGS--CHHHHHHHHHHHH
T ss_pred HHHH-HHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHc-----CChHHHHHHHHhc--cchhh--hHHHHHHHHHHHH
Confidence 1111 134556777766666666666432 22222221 2344555555554 22211 1111111111111
Q ss_pred ccchhhhhhhhhhhhhcHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHhcCchHH------
Q 002370 363 GLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSATF------ 436 (930)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~Ll~~l~~k~~~p~~~~~~~~~~d~~d~f~~~R~~~~d~l~~~~~~l~~~~~------ 436 (930)
.+.... .. ..-......+++.+++-+..+ + + +.|......+.+++. +++..
T Consensus 216 nl~~~~----~~--~~~~~~~~~~lp~L~~LL~~~----------~--~---~v~~~A~~aL~~L~~--~~~~~~~~i~~ 272 (510)
T 3ul1_B 216 NLCRNK----NP--APPLDAVEQILPTLVRLLHHN----------D--P---EVLADSCWAISYLTD--GPNERIEMVVK 272 (510)
T ss_dssp HHHCCC----SS--CCCHHHHHHHHHHHHHHTTCS----------C--H---HHHHHHHHHHHHHTS--SCHHHHHHHHT
T ss_pred HHhhcc----cc--hhHHHHHHhHHHHHHHHHhcC----------C--H---HHHHHHHHHHHHHhh--chhhhHHHHHh
Confidence 010000 00 011112234444444443211 0 1 233334444444321 11111
Q ss_pred ---HHHHHHhhhcCCCCCCCchhhhHHHHHHHhhhhccccCCCccch-hHHHHHHHHhccCchhhhhhHHHHHHHHHHHH
Q 002370 437 ---IQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDF-SVIMQLVAVLSASRSEELKGFMHIVYRSLADV 512 (930)
Q Consensus 437 ---l~~~~~~~~~~~~~~~~W~~~Ea~L~~l~~iae~~~~~~~~~~l-~~i~~~l~~l~~~~~~~~~~~~~v~~~t~~~~ 512 (930)
+..+...+ . +.+..-.+.++.+++.++.+-..... ..+ ...++.+..+..++... ++..+ +++
T Consensus 273 ~g~i~~Lv~lL-~----~~~~~v~~~al~aL~nl~~~~~~~~~-~i~~~g~l~~L~~LL~~~~~~------v~~~A-~~a 339 (510)
T 3ul1_B 273 KGVVPQLVKLL-G----ATELPIVTPALRAIGNIVTGTDEQTQ-KVIDAGALAVFPSLLTNPKTN------IQKEA-TWT 339 (510)
T ss_dssp TTCHHHHHHHH-T----CSCHHHHHHHHHHHHHHTTSCHHHHH-HHHHTTGGGGCC-CTTCSSHH------HHHHH-HHH
T ss_pred cccchhhhhhh-c----CCChhhhhHHHHHHHHhhcCCHHHHH-HHhhccchHHHHHHhcCCCHH------HHHHH-HHH
Confidence 12222222 2 34577788889999887643221000 000 00111222333444422 44434 588
Q ss_pred HHhhHHHHHhchhch--HHHHHHHHHhccc--cchhHHHHHHHHHHHHHhhcc----cCCCccHHHHHHHHHHHHhcCCC
Q 002370 513 IGSYSKWISAFQTNA--RPLLLFLAAGISE--AVSSNACASALRKICEDASAL----IDEPSNLEILMWIGEALEKRHLP 584 (930)
Q Consensus 513 ig~y~~wl~~~p~~L--~~vl~~l~~~l~~--p~v~~~Aa~al~~lc~~c~~~----l~~p~~~~~l~~~~~~l~~~~l~ 584 (930)
++..+..-..+...+ ..+++.++..+.+ ++++..|+.|+.+++..+... +.....++.|..+.. .-+
T Consensus 340 L~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~-----~~d 414 (510)
T 3ul1_B 340 MSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLS-----AKD 414 (510)
T ss_dssp HHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGG-----CSC
T ss_pred HHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhc-----CCC
Confidence 888764322222211 1355666666654 458999999999999865431 111112333333322 125
Q ss_pred hhhHHHHHHHHHHHHcc
Q 002370 585 LEDEEEVVGAISLILGS 601 (930)
Q Consensus 585 ~~~~~~l~eai~~vi~~ 601 (930)
.+.+..+.+++..++..
T Consensus 415 ~~i~~~~L~aL~nil~~ 431 (510)
T 3ul1_B 415 TKIIQVILDAISNIFQA 431 (510)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66677788888888753
No 40
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=94.31 E-value=9.4 Score=47.56 Aligned_cols=309 Identities=12% Similarity=0.042 Sum_probs=146.6
Q ss_pred HHHHHHhhHHHHHhc--hhchHHHHHHHHHhc-------cccchhHHHHHHHHHHHHHhhcccCCCccHHH-HHHHHHHH
Q 002370 509 LADVIGSYSKWISAF--QTNARPLLLFLAAGI-------SEAVSSNACASALRKICEDASALIDEPSNLEI-LMWIGEAL 578 (930)
Q Consensus 509 ~~~~ig~y~~wl~~~--p~~L~~vl~~l~~~l-------~~p~v~~~Aa~al~~lc~~c~~~l~~p~~~~~-l~~~~~~l 578 (930)
+++.+|+.++-+... ..+++.+++++..-. .+|.++..++.++.++++-.+.+ |.+++. +..+...+
T Consensus 473 al~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~---~~~l~~vl~~ll~~l 549 (1049)
T 3m1i_C 473 LSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAH---WNFLRTVILKLFEFM 549 (1049)
T ss_dssp HHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHC---HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHHHh
Confidence 358888876533222 346888888887522 23445656888888888765542 223332 22233332
Q ss_pred HhcCCChhhHHHHHHHHHHHHccCCchHHHHHHHH--------HHHHHHHHHHHhhhhccCCCCCCCCchhhHHHHHHhH
Q 002370 579 EKRHLPLEDEEEVVGAISLILGSVSNKELKNNLLA--------RLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSAT 650 (930)
Q Consensus 579 ~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~~l~--------~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~ 650 (930)
.. -....+.....++..++...+ ..+. ..+.++++.+..+..... ... ..
T Consensus 550 ~~--~~~~V~~~A~~al~~l~~~~~------~~l~~~~~~~~~p~~~~il~~l~~~~~~~~-------~~~-------~~ 607 (1049)
T 3m1i_C 550 HE--THEGVQDMACDTFIKIVQKCK------YHFVIQQPRESEPFIQTIIRDIQKTTADLQ-------PQQ-------VH 607 (1049)
T ss_dssp TS--SCHHHHHHHHHHHHHHHHHHT------HHHHSCCTTCSSCHHHHHHHTHHHHHTTSC-------HHH-------HH
T ss_pred cC--CCHHHHHHHHHHHHHHHHHHH------HHhhcccCCCCCcHHHHHHHHHHHHHHhCC-------HHH-------HH
Confidence 21 134566666677777765322 1121 345566666666665421 111 12
Q ss_pred HHHHhhhcccccccccCCCCCCCCchHHHHHHHHHHHH----HHHHHh--h---hccchHHH---HHHHHHHHHHHHHhh
Q 002370 651 RGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFWPML----EKLFRS--E---HMENGNLS---TAACRALSLAIQSSG 718 (930)
Q Consensus 651 ~~l~~l~~i~~~l~~~~~~~~~~~~p~~~~~~~i~~~l----~~i~~~--~---~~~~~~v~---e~~c~~~~~~i~~l~ 718 (930)
...+.++.+++.... ..-...+++.+++.+ ..++.. . ..++.+.+ -.++.++..+.+.+|
T Consensus 608 ~~~eai~~ii~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~l~~~~~~~~~l~ 679 (1049)
T 3m1i_C 608 TFYKACGIIISEERS--------VAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMG 679 (1049)
T ss_dssp HHHHHHHHHHHTCCS--------HHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHcCCC--------HHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhcCHHHHHHHHHHHHHHHHHHHHhh
Confidence 234555555543210 011233444433332 222221 0 01133222 244667777888889
Q ss_pred hhhHhhHHHHHHHHHHhhhhh-----------CC----cch------HHHHHHHHHHHhcCCCCccc-hHHHHHHHHhhh
Q 002370 719 QHFVTLLPQVLDCLSTNFVSF-----------QN----HEC------YIRTASVVIEEFGHKDEYGP-LFVTTFERFSQA 776 (930)
Q Consensus 719 ~~~~p~l~~l~~~l~~~~~~~-----------~~----~~~------~L~l~~~li~~fg~~~~~~~-~l~~l~~~l~~~ 776 (930)
..+.|.++.+...++..|... ++ ++. +...+..++..|.++..... .+...+..+.+.
T Consensus 680 ~~f~p~~~~i~~~~l~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~l~~ll~~~~~~~~~l~~~~~~~~~~~l~~ 759 (1049)
T 3m1i_C 680 ADFYPQLGHIYYNMLQLYRAVSSMISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYISKARNLDDVVKVLVEPLLNA 759 (1049)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCchhhhhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 888888777655544434321 00 000 11111122333322111100 011111111111
Q ss_pred HHHHHhhcCCCCCCCCchHHHHHHHHHHHHhhhhHHHHhhchhchHHHHHHHHHhhc---cCchhHHHHHHHHHHHHHhh
Q 002370 777 ASVRALNSSYICDQEPDLVEAYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICCT---AMHRGAALAAMSYLSCFLEE 853 (930)
Q Consensus 777 ~~~~~l~~~~~~~~~pD~~~~~f~l~~~~l~~~p~~~~~s~~~~l~~~l~~~l~~l~---~~e~~~~~a~~~fl~~li~~ 853 (930)
. +..++.. ... ..| ..++.+++.++.+.+..+-+.=+..+..++++++..+. ..+++..++.+.|+..++..
T Consensus 760 l-l~~~~~~-~~~-~~~--~~~l~l~~~ii~~~~~~~~~~l~~i~~~l~~~~~~~i~~~~~~~pd~~~~~f~ll~~i~~~ 834 (1049)
T 3m1i_C 760 V-LEDYMNN-VPD-ARD--AEVLNCMTTVVEKVGHMIPQGVILILQSVFECTLDMINKDFTEYPEHRVEFYKLLKVINEK 834 (1049)
T ss_dssp H-HHHHHHS-CGG-GCC--THHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHSSCSSSSHHHHHHHHHHHHHHHHH
T ss_pred H-HHHHHhC-Ccc-ccc--HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcchhhCHHHHHHHHHHHHHHHHh
Confidence 1 1222210 001 011 36788888888876543221101345556666654453 35789999999999999976
Q ss_pred hh
Q 002370 854 CL 855 (930)
Q Consensus 854 ~~ 855 (930)
+.
T Consensus 835 ~~ 836 (1049)
T 3m1i_C 835 SF 836 (1049)
T ss_dssp CT
T ss_pred CH
Confidence 43
No 41
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=93.73 E-value=1.1 Score=45.18 Aligned_cols=152 Identities=13% Similarity=0.135 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhhhhhCCcchHHHHHHHHHHHhcCCCC
Q 002370 682 RVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTNFVSFQNHECYIRTASVVIEEFGHKDE 761 (930)
Q Consensus 682 ~~i~~~l~~i~~~~~~~~~~v~e~~c~~~~~~i~~l~~~~~p~l~~l~~~l~~~~~~~~~~~~~L~l~~~li~~fg~~~~ 761 (930)
.++++.+...+. -..+..+++.+|.++..+...++..+.++++.+++.+...+.. +...+=..+...+..+....
T Consensus 55 ~~i~~~L~~~l~--kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~~ilp~ll~~l~d--~~~~vr~~a~~aL~~~~~~~- 129 (242)
T 2qk2_A 55 GALVSALKKVIT--KDSNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKE--KKPNVVTALREAIDAIYAST- 129 (242)
T ss_dssp HHHHHHHHHHHH--HCSCHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGGC--CCHHHHHHHHHHHHHHHTTS-
T ss_pred HHHHHHHHHHhc--cCCCHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHcC-
Confidence 345566666553 1257889999999999999999999999999999988887753 33322233333333333221
Q ss_pred ccchHHHHHHHHhhhHHHHHhhcCCCCCCCCchHHHHHHHHHHHHhhh-hHHHHhhchhchHHHHHHHHHhhccCchhHH
Q 002370 762 YGPLFVTTFERFSQAASVRALNSSYICDQEPDLVEAYTNFASTFVRTS-RKEVLAASGALLEVSFQKAAICCTAMHRGAA 840 (930)
Q Consensus 762 ~~~~l~~l~~~l~~~~~~~~l~~~~~~~~~pD~~~~~f~l~~~~l~~~-p~~~~~s~~~~l~~~l~~~l~~l~~~e~~~~ 840 (930)
.+..++..+ +..+. +.+|.+......++.+++.++ |..++. +.++.++.....++.-.++.+-
T Consensus 130 ---~~~~ll~~l-----~~~l~-----~~~~~vr~~~l~~l~~~l~~~~~~~~~~---~~l~~l~p~l~~~l~D~~~~VR 193 (242)
T 2qk2_A 130 ---SLEAQQESI-----VESLS-----NKNPSVKSETALFIARALTRTQPTALNK---KLLKLLTTSLVKTLNEPDPTVR 193 (242)
T ss_dssp ---CHHHHHHHH-----HHHTT-----CSCHHHHHHHHHHHHHHHTTCCGGGCCH---HHHHHHHHHHHHHHTSSCHHHH
T ss_pred ---CHHHHHHHH-----HHHHc-----CCChHHHHHHHHHHHHHHHHcCCCCccH---HHHHHHHHHHHHHhcCCChHHH
Confidence 123333322 12232 357999999999999998876 553322 3567788888888877788887
Q ss_pred HHHHHHHHHHHhhh
Q 002370 841 LAAMSYLSCFLEEC 854 (930)
Q Consensus 841 ~a~~~fl~~li~~~ 854 (930)
.++...+..+....
T Consensus 194 ~~A~~~l~~l~~~v 207 (242)
T 2qk2_A 194 DSSAEALGTLIKLM 207 (242)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc
Confidence 78877777766543
No 42
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=93.63 E-value=7.1 Score=39.81 Aligned_cols=218 Identities=14% Similarity=0.085 Sum_probs=124.4
Q ss_pred HHHHHHHhccCCChHHHHHHHHHHHHhhcChHHHHHHHHhhccCCCCCCccchhHHhhhHHhHHHhccCcCCCChHHHHH
Q 002370 9 VAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKDA 88 (930)
Q Consensus 9 v~~av~~ly~~~d~~~~~~A~~~L~~fq~s~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~ki~~~~~~l~~e~~~~ 88 (930)
+...+..| .++|+..|..|-..|.++. ++++......+|.++ +..+|..|+..|.. +.. +.+....
T Consensus 25 i~~L~~~L-~~~~~~vr~~A~~~L~~~~-~~~~~~~L~~~l~d~------~~~vR~~A~~aL~~-l~~-----~~~~~~~ 90 (280)
T 1oyz_A 25 DDELFRLL-DDHNSLKRISSARVLQLRG-GQDAVRLAIEFCSDK------NYIRRDIGAFILGQ-IKI-----CKKCEDN 90 (280)
T ss_dssp HHHHHHHT-TCSSHHHHHHHHHHHHHHC-CHHHHHHHHHHHTCS------SHHHHHHHHHHHHH-SCC-----CTTTHHH
T ss_pred HHHHHHHH-HcCCHHHHHHHHHHHHccC-CchHHHHHHHHHcCC------CHHHHHHHHHHHHH-hcc-----ccccchH
Confidence 44445445 4678899999999999887 788999999999764 36899999998854 221 1122222
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcc-cCchHHHHHHHhhcccCCCchhHHHHHHHhhhhcc-cccc--c
Q 002370 89 LLNALLVAAKRFSSGPPQLLTQICLALSALILRAVE-HGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEE-VIDS--Q 164 (930)
Q Consensus 89 lr~~Ll~~l~~~~~~~~~v~~kL~~~La~l~~~~~~-W~~~i~~li~~~~~~~~~~~~~~~~L~iL~~l~EE-~~~~--~ 164 (930)
+...|...+.+ ..+..|+...+.+|+.+...... .+..++.++..+... ++.........|..+..+ .... .
T Consensus 91 l~~~L~~~~~~--d~~~~vr~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~d~--~~~vR~~a~~aL~~~~~~~~~~~L~~ 166 (280)
T 1oyz_A 91 VFNILNNMALN--DKSACVRATAIESTAQRCKKNPIYSPKIVEQSQITAFDK--STNVRRATAFAISVINDKATIPLLIN 166 (280)
T ss_dssp HHHHHHHHHHH--CSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCS--CHHHHHHHHHHHHTC---CCHHHHHH
T ss_pred HHHHHHHHHhc--CCCHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHhhCC--CHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 22233222222 45678999999999888754332 234556666655432 222222333333333221 0000 0
Q ss_pred ccccCCCHHHHHHHHHHHHhh---hhHHHHHHHHHHhhccCCCCCcchhhhHHHHHHHHHHHHHhccccccCcchhcccc
Q 002370 165 ASDCNISSAHRSQYGQELLSH---TPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHP 241 (930)
Q Consensus 165 ~~~~~l~~~~r~~~~~~l~~~---~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~c~~sWi~~~~~~~~~~~~i~~~~ 241 (930)
.+.. -....|......+... .+.++..+...+.. ++..++..++.++... + ...
T Consensus 167 ~l~d-~~~~vr~~a~~aL~~~~~~~~~~~~~L~~~l~d--------~~~~vR~~A~~aL~~~---~-----------~~~ 223 (280)
T 1oyz_A 167 LLKD-PNGDVRNWAAFAININKYDNSDIRDCFVEMLQD--------KNEEVRIEAIIGLSYR---K-----------DKR 223 (280)
T ss_dssp HHTC-SSHHHHHHHHHHHHHHTCCCHHHHHHHHHHTTC--------SCHHHHHHHHHHHHHT---T-----------CGG
T ss_pred HHcC-CCHHHHHHHHHHHHhhccCcHHHHHHHHHHhcC--------CCHHHHHHHHHHHHHh---C-----------CHh
Confidence 0000 1223344444444332 45666666665543 2456777777766532 1 234
Q ss_pred hHHHHHHhcCCCCcHHHHHHHHHHHH
Q 002370 242 LLNFVFNSLQVQSSFDVAIEVLVELV 267 (930)
Q Consensus 242 ll~~l~~~L~~~~~~~~a~~~l~ei~ 267 (930)
.++.+...+.+++++..|++++..+-
T Consensus 224 ~~~~L~~~l~d~~vr~~a~~aL~~i~ 249 (280)
T 1oyz_A 224 VLSVLCDELKKNTVYDDIIEAAGELG 249 (280)
T ss_dssp GHHHHHHHHTSSSCCHHHHHHHHHHC
T ss_pred hHHHHHHHhcCccHHHHHHHHHHhcC
Confidence 67778888888888888888887653
No 43
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=93.36 E-value=13 Score=42.06 Aligned_cols=290 Identities=14% Similarity=0.072 Sum_probs=160.5
Q ss_pred cCCC-hHHHHHHHHHHHHhhcC-hH---------HHHHHHHhhccCCCCCCccchhHHhhhHHhHHHhccCcCCCChHHH
Q 002370 18 HDTE-SCNRVAANQWLVQFQQT-DA---------AWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAK 86 (930)
Q Consensus 18 ~~~d-~~~~~~A~~~L~~fq~s-~~---------aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~ki~~~~~~l~~e~~ 86 (930)
..++ +..|..|-..|..+-.. ++ +-.....+|.++ +..+|..|+.+|.+-... +++.+
T Consensus 127 ~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~------~~~v~~~a~~aL~~l~~~-----~~~~~ 195 (528)
T 4b8j_A 127 TREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSS------SDDVREQAVWALGNVAGD-----SPKCR 195 (528)
T ss_dssp TCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS------CHHHHHHHHHHHHHHHHT-----CHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCC------CHHHHHHHHHHHHHHhCC-----ChhhH
Confidence 3444 77888888888887764 33 444556666543 469999999999776542 23333
Q ss_pred HHHHH-HHHHHHHHhc--CCCHHHHHHHHHHHHHHHHHhc--c---cCchHHHHHHHhhcccCCCchhHHHHHHHhhhhc
Q 002370 87 DALLN-ALLVAAKRFS--SGPPQLLTQICLALSALILRAV--E---HGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPE 158 (930)
Q Consensus 87 ~~lr~-~Ll~~l~~~~--~~~~~v~~kL~~~La~l~~~~~--~---W~~~i~~li~~~~~~~~~~~~~~~~L~iL~~l~E 158 (930)
..+.+ ..+..|.... ..+..++...+.+|+.+..... . -...++.++..+... ++......+..|..+..
T Consensus 196 ~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~--~~~v~~~a~~aL~~l~~ 273 (528)
T 4b8j_A 196 DLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSN--DEEVLTDACWALSYLSD 273 (528)
T ss_dssp HHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCC--CHHHHHHHHHHHHHHTS
T ss_pred HHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHc
Confidence 33332 2333443332 3457888999999999886532 1 245677777777652 33344456666666653
Q ss_pred ccccccccccCCCHHHHHHHHHHHHhhhhHHHHHHHHHHhhccCCCCCcchhhhHHHHHHHHHHHHHhccccccCcchhc
Q 002370 159 EVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLA 238 (930)
Q Consensus 159 E~~~~~~~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~c~~sWi~~~~~~~~~~~~i~ 238 (930)
.- ...... +.. ..++..|...+.. ++..++..++.++..-.... .-....+.
T Consensus 274 ~~-----------~~~~~~----~~~--~g~v~~Lv~lL~~--------~~~~v~~~a~~~L~nl~~~~---~~~~~~~~ 325 (528)
T 4b8j_A 274 GT-----------NDKIQA----VIE--AGVCPRLVELLLH--------PSPSVLIPALRTVGNIVTGD---DAQTQCII 325 (528)
T ss_dssp SC-----------HHHHHH----HHH--TTCHHHHHHHTTC--------SCHHHHHHHHHHHHHHTTSC---HHHHHHHH
T ss_pred CC-----------HHHHHH----HHH--cCHHHHHHHHHcC--------CChhHHHHHHHHHHHHHcCC---HHHHHHHH
Confidence 21 111111 111 1233344444443 23467888888887765421 00011234
Q ss_pred ccchHHHHHHhcCCC---CcHHHHHHHHHHHHhccCChhHHHHh-hhhhhHHhhhchhhccCcHhHHhhHHHHHHHHHHh
Q 002370 239 AHPLLNFVFNSLQVQ---SSFDVAIEVLVELVGRHEGLPQALLC-RVPFLKELLLLPALTDGDEKVIGGLACLMSEIGQA 314 (930)
Q Consensus 239 ~~~ll~~l~~~L~~~---~~~~~a~~~l~ei~~~~~~~~~~l~~-~~~~l~~~~~~~~~~~~d~d~~~~l~~l~~~~~e~ 314 (930)
....++.+...|.++ .+...|+.+|..+.....+..+.++. .++ +.+. ..+.++|.+.....+..+..++..
T Consensus 326 ~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i---~~L~-~lL~~~~~~v~~~a~~aL~nl~~~ 401 (528)
T 4b8j_A 326 DHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGII---GPLV-NLLQTAEFDIKKEAAWAISNATSG 401 (528)
T ss_dssp TTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCH---HHHH-HHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCH---HHHH-HHHhcCCHHHHHHHHHHHHHHHcC
Confidence 566788888888654 55678888888887643322222221 111 1111 133345666666666666666544
Q ss_pred ----hhHHHHhcChhHHHHHHHHHhcccCCCCCchhhhhcHHHHHHHHH
Q 002370 315 ----APSLIVEASPEALALADALLSCVAFPSEDWEIADSTLQFWSTLAS 359 (930)
Q Consensus 315 ----~~~~l~~~~~~~~~ll~~ll~~~~~p~~d~~v~~~~~~fW~~l~~ 359 (930)
....+.+ ...++.|+.+...+ +.++...++.....+..
T Consensus 402 ~~~~~~~~l~~-----~~~i~~L~~lL~~~--d~~v~~~al~~L~~l~~ 443 (528)
T 4b8j_A 402 GSHDQIKYLVS-----EGCIKPLCDLLICP--DIRIVTVCLEGLENILK 443 (528)
T ss_dssp SCHHHHHHHHH-----TTCHHHHHHGGGCS--CHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHH-----CCCHHHHHHHHcCC--CHHHHHHHHHHHHHHHH
Confidence 1222222 13456666666665 66777766666655543
No 44
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=93.33 E-value=2.6 Score=51.90 Aligned_cols=63 Identities=8% Similarity=-0.010 Sum_probs=49.2
Q ss_pred CCCCchHHHHHHHHHHHHhhhhHHHHhhchhchHHHHHHHHH--hhccCchhHHHHHHHHHHHHHhhhhh
Q 002370 789 DQEPDLVEAYTNFASTFVRTSRKEVLAASGALLEVSFQKAAI--CCTAMHRGAALAAMSYLSCFLEECLA 856 (930)
Q Consensus 789 ~~~pD~~~~~f~l~~~~l~~~p~~~~~s~~~~l~~~l~~~l~--~l~~~e~~~~~a~~~fl~~li~~~~~ 856 (930)
..||-+...+|.+++|+-+.... .+..++.+++..+. ++..+++.+..+|+..+..|...++.
T Consensus 506 ~~hp~V~~~~~~~l~rys~~~~~-----~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~ 570 (980)
T 3ibv_A 506 HPHPLVQLLYMEILVRYASFFDY-----ESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKK 570 (980)
T ss_dssp CCCHHHHHHHHHHHHHTGGGGGT-----CCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTT
T ss_pred CCCHHHHHHHHHHHHHHHHHHhc-----CchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhH
Confidence 47888888999999988775432 22578889998888 77777777888888888999987765
No 45
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=91.82 E-value=23 Score=41.02 Aligned_cols=53 Identities=9% Similarity=0.018 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHhhHHHHHhchhchHHHHHHHHHhccc--cchhHHHHHHHHHHHHHhhccc
Q 002370 504 IVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGISE--AVSSNACASALRKICEDASALI 562 (930)
Q Consensus 504 v~~~t~~~~ig~y~~wl~~~p~~L~~vl~~l~~~l~~--p~v~~~Aa~al~~lc~~c~~~l 562 (930)
+|..+ ++++|... .++..+.+++.+.+.+.+ |.|+..|+.++.++++.++..+
T Consensus 123 vr~lA-L~~L~~i~-----~~~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v 177 (618)
T 1w63_A 123 VQGLA-LCTLGCMG-----SSEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELM 177 (618)
T ss_dssp HHHHH-HHHHHHHC-----CHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGG
T ss_pred HHHHH-HHHHHhcC-----CHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHH
Confidence 45544 57888765 467777888888888876 4599999999999999877543
No 46
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=90.97 E-value=4.8 Score=40.54 Aligned_cols=154 Identities=6% Similarity=0.038 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHhh-hhhH-hhHHHHHHHHHHhhhhhCCcchH----HHHHHHHHHHh
Q 002370 683 VFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSG-QHFV-TLLPQVLDCLSTNFVSFQNHECY----IRTASVVIEEF 756 (930)
Q Consensus 683 ~i~~~l~~i~~~~~~~~~~v~e~~c~~~~~~i~~l~-~~~~-p~l~~l~~~l~~~~~~~~~~~~~----L~l~~~li~~f 756 (930)
.++..+...+. -..+..+++.+|.++..+...++ +.+. ++...++..+++.+... .+.+ -..+..++...
T Consensus 60 ~~~~~L~~~l~--~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~~llp~ll~~l~dk--k~~V~~aa~~al~~i~~~~ 135 (249)
T 2qk1_A 60 NLLGIYGHIIQ--KDANIQAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEK--KPSVIEAIRKALLTICKYY 135 (249)
T ss_dssp HHHHHHHHHHH--HCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHHHHHHHHHHGGGCC--CHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhc--cCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHc
Confidence 33455555552 13466788999999999999998 8888 88888888888777532 2222 23344444433
Q ss_pred cCCCCccchHHHHHHHHhhhHHHHHhhcCCCCCCCCchHHHHHHHHHHHHhhhh---HHHHhhchhch-HHHHHHHHHhh
Q 002370 757 GHKDEYGPLFVTTFERFSQAASVRALNSSYICDQEPDLVEAYTNFASTFVRTSR---KEVLAASGALL-EVSFQKAAICC 832 (930)
Q Consensus 757 g~~~~~~~~l~~l~~~l~~~~~~~~l~~~~~~~~~pD~~~~~f~l~~~~l~~~p---~~~~~s~~~~l-~~~l~~~l~~l 832 (930)
... ...+.+..++..+.. .+. ..+|.+.+..+.++.+++...+ ..|.. .+ ..++.....++
T Consensus 136 ~~~-~~~~~l~~ll~~l~~-----~l~-----~k~~~vk~~al~~l~~~~~~~~~~~~~l~~----~l~~~iip~l~~~l 200 (249)
T 2qk1_A 136 DPL-ASSGRNEDMLKDILE-----HMK-----HKTPQIRMECTQLFNASMKEEKDGYSTLQR----YLKDEVVPIVIQIV 200 (249)
T ss_dssp CTT-CTTCTTHHHHHHHHH-----HTT-----CSSHHHHHHHHHHHHHHHHHCCSCSHHHHH----HHTTTHHHHHHHHH
T ss_pred ccc-ccCCcHHHHHHHHHH-----HHc-----CCChHHHHHHHHHHHHHHHHcCCcchhHHH----HHHHHHHHHHHHHh
Confidence 221 111114444443322 232 2478899999999999999876 44432 35 56666667778
Q ss_pred ccCchhHHHHHHHHHHHHHhhhh
Q 002370 833 TAMHRGAALAAMSYLSCFLEECL 855 (930)
Q Consensus 833 ~~~e~~~~~a~~~fl~~li~~~~ 855 (930)
.-.++++-.++...+..+....+
T Consensus 201 ~D~~~~VR~aA~~~l~~i~~~vG 223 (249)
T 2qk1_A 201 NDTQPAIRTIGFESFAILIKIFG 223 (249)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHHC
T ss_pred cCCCHHHHHHHHHHHHHHHHHhC
Confidence 87788888888888888775543
No 47
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=90.92 E-value=13 Score=36.67 Aligned_cols=220 Identities=16% Similarity=0.122 Sum_probs=132.8
Q ss_pred HHHHHHHhccCCChHHHHHHHHHHHHhhcChH----------HHHHHHHhhccCCCCCCccchhHHhhhHHhHHHhccCc
Q 002370 9 VAQAVHVLNHDTESCNRVAANQWLVQFQQTDA----------AWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEG 78 (930)
Q Consensus 9 v~~av~~ly~~~d~~~~~~A~~~L~~fq~s~~----------aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~ki~~~~ 78 (930)
|...+..|. +++++.|..|-..|..+-.... +......+|.++ +..++..|+..|.+-...
T Consensus 4 i~~L~~~L~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~------~~~v~~~a~~~L~~l~~~-- 74 (252)
T 4hxt_A 4 VEKLVKLLT-STDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTST------DSEVQKEAARALANIASG-- 74 (252)
T ss_dssp HHHHHHHTT-CSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS------CHHHHHHHHHHHHHHTTS--
T ss_pred HHHHHHHHc-CCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCC------CHHHHHHHHHHHHHHHcC--
Confidence 444454444 5678889999999988865443 566667777653 369999999999876653
Q ss_pred CCCChHHHHHHHH-HHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHhcc------cCchHHHHHHHhhcccCCCchhHHHH
Q 002370 79 YYLQSAAKDALLN-ALLVAAKRFS-SGPPQLLTQICLALSALILRAVE------HGKPIEKLFYSLQNLQSQDNGNMAVL 150 (930)
Q Consensus 79 ~~l~~e~~~~lr~-~Ll~~l~~~~-~~~~~v~~kL~~~La~l~~~~~~------W~~~i~~li~~~~~~~~~~~~~~~~L 150 (930)
+++.+..+.+ ..+..+...- .++..++...+.+|..+...... -...++.++..+... ++......+
T Consensus 75 ---~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~--~~~~~~~a~ 149 (252)
T 4hxt_A 75 ---PDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTST--DSEVQKEAA 149 (252)
T ss_dssp ---CHHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHH
T ss_pred ---ChHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC--CHHHHHHHH
Confidence 1333333332 3455554432 45678889999999988743221 235677788777652 333445566
Q ss_pred HHHhhhhcccccccccccCCCHHHHHHHHHHHHhhhhHHHHHHHHHHhhccCCCCCcchhhhHHHHHHHHHHHHHhcccc
Q 002370 151 EMLTVLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFT 230 (930)
Q Consensus 151 ~iL~~l~EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~c~~sWi~~~~~~ 230 (930)
..|..+...- +..+.. +.. ..++..|...+.+ ++..++..++.++..-....
T Consensus 150 ~~L~~l~~~~-----------~~~~~~----~~~--~~~i~~L~~ll~~--------~~~~v~~~a~~~L~~l~~~~--- 201 (252)
T 4hxt_A 150 RALANIASGP-----------DEAIKA----IVD--AGGVEVLVKLLTS--------TDSEVQKEAARALANIASGP--- 201 (252)
T ss_dssp HHHHHHTTSC-----------HHHHHH----HHH--TTHHHHHHHHTTC--------SCHHHHHHHHHHHHHHTTSB---
T ss_pred HHHHHHHcCC-----------HHHHHH----HHH--CcCHHHHHHHHCC--------CCHHHHHHHHHHHHHHHcCC---
Confidence 6666665321 111111 111 2344445444443 24578888988888776521
Q ss_pred ccCcchhcccchHHHHHHhcCCC--CcHHHHHHHHHHHHhcc
Q 002370 231 EISQGSLAAHPLLNFVFNSLQVQ--SSFDVAIEVLVELVGRH 270 (930)
Q Consensus 231 ~~~~~~i~~~~ll~~l~~~L~~~--~~~~~a~~~l~ei~~~~ 270 (930)
.-....+.....++.+.+.+.++ +++..|+.+|..+....
T Consensus 202 ~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 243 (252)
T 4hxt_A 202 TSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGG 243 (252)
T ss_dssp HHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCC
Confidence 00111234566888888888754 56778888888877654
No 48
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=90.62 E-value=29 Score=40.10 Aligned_cols=109 Identities=7% Similarity=0.046 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHhhHHHHHhchhchHHHHHHHHHhc--cc--cchhHHHHHHHHHHHHHhhcccCCCccHHHHHHHHHHHH
Q 002370 504 IVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGI--SE--AVSSNACASALRKICEDASALIDEPSNLEILMWIGEALE 579 (930)
Q Consensus 504 v~~~t~~~~ig~y~~wl~~~p~~L~~vl~~l~~~l--~~--p~v~~~Aa~al~~lc~~c~~~l~~p~~~~~l~~~~~~l~ 579 (930)
+|..+ +.++|+.. .|++.+.+++.+.+++ .+ |.|+..|+.++.++++.++..+..+.+.+.+..+..
T Consensus 127 ir~lA-Lr~L~~i~-----~~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~~~~~~~~l~~lL~--- 197 (621)
T 2vgl_A 127 FMGLA-LHCIANVG-----SREMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVPMGDWTSRVVHLLN--- 197 (621)
T ss_dssp HHHHH-HHHHHHHC-----CHHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCCCCSCHHHHHHHTT---
T ss_pred HHHHH-HHHhhccC-----CHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcCchhHHHHHHHHhC---
Confidence 34434 57777764 4888899999999998 65 559999999999999988766531135555544332
Q ss_pred hcCCChhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHHHHhhhhc
Q 002370 580 KRHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDG 629 (930)
Q Consensus 580 ~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~~l~~ll~p~~~~l~~~~~~ 629 (930)
.-+...+...+.+++.+...-| ..+..++..++..+.+++..
T Consensus 198 --d~d~~V~~~a~~~l~~i~~~~~------~~~~~~~~~~~~~L~~ll~~ 239 (621)
T 2vgl_A 198 --DQHLGVVTAATSLITTLAQKNP------EEFKTSVSLAVSRLSRIVTS 239 (621)
T ss_dssp --CSCHHHHHHHHHHHHHHHHHCH------HHHTTHHHHHHHHHHHHHHC
T ss_pred --CCCccHHHHHHHHHHHHHHhCh------HHHHHHHHHHHHHHHHHHhC
Confidence 1233444444444444443221 12334455556666666543
No 49
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=88.89 E-value=5.5 Score=41.30 Aligned_cols=168 Identities=13% Similarity=0.188 Sum_probs=101.3
Q ss_pred hhHHHHHHHHHHHHHhccccccCcchhcccchHHHHHH-----hcC-CCCcHH-HHHHHHHHHHhccCChhHHHHhhhhh
Q 002370 211 DRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFN-----SLQ-VQSSFD-VAIEVLVELVGRHEGLPQALLCRVPF 283 (930)
Q Consensus 211 ~~~~~~l~c~~sWi~~~~~~~~~~~~i~~~~ll~~l~~-----~L~-~~~~~~-~a~~~l~ei~~~~~~~~~~l~~~~~~ 283 (930)
.++...|+=+..|++-.+ +.+.+ ...+++.+++ .-. .|+.++ ..++++..++.+..+.....+|.++.
T Consensus 44 ~vKkeiLkLiet~i~~~~----d~~~v-~~~~ippLl~~VL~DY~~~vp~aRepeVL~l~~tii~kl~~~i~~~vp~Il~ 118 (321)
T 1w9c_A 44 TVKRETLKLISGWVSRSN----DPQMV-AENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFD 118 (321)
T ss_dssp HHHHHHHHHHHHHHTTCS----CHHHH-HHHTHHHHHHHHHHHHHTSCGGGCCTHHHHHHHHHHHHHGGGGGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCC----CHHHH-HHHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 366778888888887431 11222 2234443332 222 355655 46677777777654433222233322
Q ss_pred -hH-Hhhhchhhc---cCcHhHHhhHHHHHHHHHHhhhHHHHhcCh-hHHHHHHHHHhcccCCCCCchhhhhcHHHHHHH
Q 002370 284 -LK-ELLLLPALT---DGDEKVIGGLACLMSEIGQAAPSLIVEASP-EALALADALLSCVAFPSEDWEIADSTLQFWSTL 357 (930)
Q Consensus 284 -l~-~~~~~~~~~---~~d~d~~~~l~~l~~~~~e~~~~~l~~~~~-~~~~ll~~ll~~~~~p~~d~~v~~~~~~fW~~l 357 (930)
+. ..+ ..++ ++-+|-..++.+++-++...+...+..-++ .+..+++.++....|+ +++|++..+.--..|
T Consensus 119 ~VFe~TL--~MI~~df~eyPehR~~Ff~LL~ai~~~cF~al~~lp~~~fklvidsiiWa~kH~--~r~V~e~gL~il~~l 194 (321)
T 1w9c_A 119 AVFECTL--NMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQFKLVLDSIIWAFKHT--MRNVADTGLQILFTL 194 (321)
T ss_dssp HHHHHHH--HHHSSTTTCSHHHHHHHHHHHHHHHHHCTTHHHHSCHHHHHHHHHHHHHHTTCS--SHHHHHHHHHHHHHH
T ss_pred HHHHHHH--HHHhcccccChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHcCCC--CchHHHHHHHHHHHH
Confidence 00 111 1122 345788889999999998887777776554 5678899999999998 799999888877776
Q ss_pred HHHhhccchhhhhhhhhhhhhcHHHHHHHHHHHHHHh
Q 002370 358 ASYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRA 394 (930)
Q Consensus 358 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~Ll~~l~~k~ 394 (930)
.+.+.. .+ +...+-|+.+|..++..++.-+
T Consensus 195 l~n~~~-~~------~~~~~Fy~~fy~~il~~if~Vl 224 (321)
T 1w9c_A 195 LQNVAQ-EE------AAAQSFYQTYFCDILQHIFSVV 224 (321)
T ss_dssp HHHHHH-CH------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhc-Ch------HHHHHHHHHHHHHHHHHHHHHH
Confidence 665532 11 1233456667777776665555
No 50
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=88.18 E-value=7.1 Score=38.91 Aligned_cols=191 Identities=15% Similarity=0.079 Sum_probs=114.4
Q ss_pred hHHHHHHHHhhccCCCCCCccchhHHhhhHHhHHHhccCcCCCChHHHHH-HHHHHHHHHHHhc-CCCHHHHHHHHHHHH
Q 002370 39 DAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKDA-LLNALLVAAKRFS-SGPPQLLTQICLALS 116 (930)
Q Consensus 39 ~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~ki~~~~~~l~~e~~~~-lr~~Ll~~l~~~~-~~~~~v~~kL~~~La 116 (930)
+..|.....+|.++ +.++|.-|+..|++.+.. +.+.+.. +....+..+...- .++..++...+.+|.
T Consensus 11 ~~~~~~~~~~L~s~------~~~~~~~a~~~L~~~l~~-----~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~ 79 (252)
T 4db8_A 11 GSELPQMTQQLNSD------DMQEQLSATRKFSQILSD-----GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALS 79 (252)
T ss_dssp TCSHHHHHHHHHSS------CSSHHHHHHHHHHHHHHH-----HHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHcCC------CHHHHHHHHHHHHHHHcC-----CCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 44567777888764 369999999999887764 1233322 3333455554432 345778888888888
Q ss_pred HHHHHhc------ccCchHHHHHHHhhcccCCCchhHHHHHHHhhhhcccccccccccCCCHHHHHHHHHHHHhhhhHHH
Q 002370 117 ALILRAV------EHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVV 190 (930)
Q Consensus 117 ~l~~~~~------~W~~~i~~li~~~~~~~~~~~~~~~~L~iL~~l~EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~~v~ 190 (930)
.++.... .....++.++..+.+. ++......+..|..+...- ..+...+. ...++
T Consensus 80 ~l~~~~~~~~~~i~~~g~i~~L~~lL~~~--~~~v~~~a~~~L~~l~~~~-----------~~~~~~~~------~~~~i 140 (252)
T 4db8_A 80 NIASGGNEQIQAVIDAGALPALVQLLSSP--NEQILQEALWALSNIASGG-----------NEQIQAVI------DAGAL 140 (252)
T ss_dssp HHTTSCHHHHHHHHHTTHHHHHHHGGGCS--CHHHHHHHHHHHHHHTTSC-----------HHHHHHHH------HTTHH
T ss_pred HHhcCCHHHHHHHHHcCCHHHHHHHHcCC--CHHHHHHHHHHHHHhhcCC-----------chHHHHHH------HCCCH
Confidence 8876322 1245677777777652 3444556667776665321 11111111 11344
Q ss_pred HHHHHHHhhccCCCCCcchhhhHHHHHHHHHHHHHhccccccCcchhcccchHHHHHHhcCCC--CcHHHHHHHHHHHHh
Q 002370 191 EFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSLQVQ--SSFDVAIEVLVELVG 268 (930)
Q Consensus 191 ~~l~~~l~~~~~~~~~~~~~~~~~~~l~c~~sWi~~~~~~~~~~~~i~~~~ll~~l~~~L~~~--~~~~~a~~~l~ei~~ 268 (930)
..|...+.. ++..++..++.++..-.... .-....+.....++.+.+.|.++ ++...|+.+|..+..
T Consensus 141 ~~L~~lL~~--------~~~~v~~~a~~~L~~l~~~~---~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 209 (252)
T 4db8_A 141 PALVQLLSS--------PNEQILQEALWALSNIASGG---NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS 209 (252)
T ss_dssp HHHHHGGGC--------SCHHHHHHHHHHHHHHTTSC---HHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhC--------CCHHHHHHHHHHHHHHHcCC---hHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhc
Confidence 555555543 24568888888888766521 00011234567888999988764 567889999998885
Q ss_pred cc
Q 002370 269 RH 270 (930)
Q Consensus 269 ~~ 270 (930)
..
T Consensus 210 ~~ 211 (252)
T 4db8_A 210 GG 211 (252)
T ss_dssp SC
T ss_pred CC
Confidence 44
No 51
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=85.89 E-value=49 Score=37.01 Aligned_cols=293 Identities=12% Similarity=0.062 Sum_probs=156.7
Q ss_pred HHHHHHHhccCCChHHHHHHHHHHHHhh---cCh--------HHHHHHHHhhccCCCCCCccchhHHhhhHHhHHHhccC
Q 002370 9 VAQAVHVLNHDTESCNRVAANQWLVQFQ---QTD--------AAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNE 77 (930)
Q Consensus 9 v~~av~~ly~~~d~~~~~~A~~~L~~fq---~s~--------~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~ki~~~ 77 (930)
+++.|..++ +.|++.+.+|-+.++++= +.| .+-....++|...+ +..+|+-||-.|.+-...
T Consensus 59 i~~~v~~l~-s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~-----~~~lq~~Aa~aL~nias~- 131 (510)
T 3ul1_B 59 VEDIVKGIN-SNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTD-----CSPIQFESAWALTNIASG- 131 (510)
T ss_dssp HHHHHHHHT-SSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTT-----CHHHHHHHHHHHHHHHTS-
T ss_pred HHHHHHHhc-CCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCC-----CHHHHHHHHHHHHHHhcC-
Confidence 677788876 568888888888888752 122 24556777886533 468999999999876542
Q ss_pred cCCCChHHHHHHHHH-HHHHHHHh-cCCCHHHHHHHHHHHHHHHHHhcc------cCchHHHHHHHhhcccCCCc---hh
Q 002370 78 GYYLQSAAKDALLNA-LLVAAKRF-SSGPPQLLTQICLALSALILRAVE------HGKPIEKLFYSLQNLQSQDN---GN 146 (930)
Q Consensus 78 ~~~l~~e~~~~lr~~-Ll~~l~~~-~~~~~~v~~kL~~~La~l~~~~~~------W~~~i~~li~~~~~~~~~~~---~~ 146 (930)
+.+....+.+. .+..|... ..++..|+.+.+.+|..++..... -...++-++..+.....+.. ..
T Consensus 132 ----~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~ 207 (510)
T 3ul1_B 132 ----TSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYL 207 (510)
T ss_dssp ----CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHH
T ss_pred ----CHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHH
Confidence 34555544442 44444433 245678999999999999864321 12345556665543210000 11
Q ss_pred HHHHHHHhhhhcccccccccccCCCHHHHHHHHHHHHhhhhHHHHHHHHHHhhccCCCCCcchhhhHHHHHHHHHHHHHh
Q 002370 147 MAVLEMLTVLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRA 226 (930)
Q Consensus 147 ~~~L~iL~~l~EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~c~~sWi~~ 226 (930)
......|..+...-.. .... .....++..|...+.+ ++..++..++.|+..-...
T Consensus 208 ~~a~~~L~nl~~~~~~-------~~~~----------~~~~~~lp~L~~LL~~--------~~~~v~~~A~~aL~~L~~~ 262 (510)
T 3ul1_B 208 RNLTWTLSNLCRNKNP-------APPL----------DAVEQILPTLVRLLHH--------NDPEVLADSCWAISYLTDG 262 (510)
T ss_dssp HHHHHHHHHHHCCCSS-------CCCH----------HHHHHHHHHHHHHTTC--------SCHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHhhcccc-------hhHH----------HHHHhHHHHHHHHHhc--------CCHHHHHHHHHHHHHHhhc
Confidence 2233333333322110 0100 0122344555555443 2346777777777654331
Q ss_pred ccccccCcchhcccchHHHHHHhcCCC--CcHHHHHHHHHHHHhccCChhHHHHh-hhhhhHHhhhchhhccCcHhHHhh
Q 002370 227 GCFTEISQGSLAAHPLLNFVFNSLQVQ--SSFDVAIEVLVELVGRHEGLPQALLC-RVPFLKELLLLPALTDGDEKVIGG 303 (930)
Q Consensus 227 ~~~~~~~~~~i~~~~ll~~l~~~L~~~--~~~~~a~~~l~ei~~~~~~~~~~l~~-~~~~l~~~~~~~~~~~~d~d~~~~ 303 (930)
. .-....+.....++.+...|.++ .+...|+.++..+....+.....++. ..+ +.+. ..+.+.+.+..+.
T Consensus 263 ~---~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l---~~L~-~LL~~~~~~v~~~ 335 (510)
T 3ul1_B 263 P---NERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGAL---AVFP-SLLTNPKTNIQKE 335 (510)
T ss_dssp C---HHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGG---GGCC--CTTCSSHHHHHH
T ss_pred h---hhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccch---HHHH-HHhcCCCHHHHHH
Confidence 1 00011234566788888888765 45677888888887655433333321 111 1111 1344556666666
Q ss_pred HHHHHHHHHHhhh---HHHHhcChhHHHHHHHHHhcccCCCCCchhhhhcH
Q 002370 304 LACLMSEIGQAAP---SLIVEASPEALALADALLSCVAFPSEDWEIADSTL 351 (930)
Q Consensus 304 l~~l~~~~~e~~~---~~l~~~~~~~~~ll~~ll~~~~~p~~d~~v~~~~~ 351 (930)
.|..+..++.... ..+.+ ..+++.|+.+...+ +.++...+.
T Consensus 336 A~~aL~nl~a~~~~~~~~v~~-----~g~i~~Lv~lL~~~--~~~v~~~Aa 379 (510)
T 3ul1_B 336 ATWTMSNITAGRQDQIQQVVN-----HGLVPFLVGVLSKA--DFKTQKEAA 379 (510)
T ss_dssp HHHHHHHHTTSCHHHHHHHHH-----TTHHHHHHHHHHSS--CHHHHHHHH
T ss_pred HHHHHHHHHcCcHHHHHHHHh-----cCCHHHHHHHHcCC--CHHHHHHHH
Confidence 6666666643221 11221 13556666666664 566655443
No 52
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=85.00 E-value=31 Score=33.87 Aligned_cols=186 Identities=14% Similarity=0.075 Sum_probs=110.3
Q ss_pred HHHHhhccCCCCCCccchhHHhhhHHhHHHhccCcCCCChHHHHHH-HHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHH
Q 002370 44 IATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKDAL-LNALLVAAKRFS-SGPPQLLTQICLALSALILR 121 (930)
Q Consensus 44 ~~~~LL~~~~~~~~~~~~v~ffaA~tL~~ki~~~~~~l~~e~~~~l-r~~Ll~~l~~~~-~~~~~v~~kL~~~La~l~~~ 121 (930)
....+|.++ +.++|.-|+..|.+-...+ ++.+..+ +...+..+...- .++..++...+.+|..++..
T Consensus 6 ~L~~~L~~~------~~~~~~~a~~~L~~l~~~~-----~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 74 (252)
T 4hxt_A 6 KLVKLLTST------DSETQKEAARDLAEIASGP-----ASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASG 74 (252)
T ss_dssp HHHHHTTCS------CHHHHHHHHHHHHHHHTSC-----HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHcCC------CHHHHHHHHHHHHHHhcCC-----cHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence 345566543 3689999999998877653 2333333 233555554432 35578899999999988765
Q ss_pred hcc------cCchHHHHHHHhhcccCCCchhHHHHHHHhhhhcccccccccccCCCHHHHHHHHHHHHhhhhHHHHHHHH
Q 002370 122 AVE------HGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQ 195 (930)
Q Consensus 122 ~~~------W~~~i~~li~~~~~~~~~~~~~~~~L~iL~~l~EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~ 195 (930)
... -...++.++..+... ++......+..|..+...- +..+..+ .. ..++..+..
T Consensus 75 ~~~~~~~~~~~~~i~~l~~ll~~~--~~~v~~~a~~~L~~l~~~~-----------~~~~~~~----~~--~~~i~~L~~ 135 (252)
T 4hxt_A 75 PDEAIKAIVDAGGVEVLVKLLTST--DSEVQKEAARALANIASGP-----------DEAIKAI----VD--AGGVEVLVK 135 (252)
T ss_dssp CHHHHHHHHHTTHHHHHHHHTTCS--SHHHHHHHHHHHHHHTTSC-----------HHHHHHH----HH--TTHHHHHHH
T ss_pred ChHHHHHHHHCCCHHHHHHHHcCC--CHHHHHHHHHHHHHHHcCC-----------HHHHHHH----HH--CCCHHHHHH
Confidence 221 135677777777652 3344556667776666421 1111111 11 123444444
Q ss_pred HHhhccCCCCCcchhhhHHHHHHHHHHHHHhccccccCcchhcccchHHHHHHhcCCC--CcHHHHHHHHHHHHhcc
Q 002370 196 QSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSLQVQ--SSFDVAIEVLVELVGRH 270 (930)
Q Consensus 196 ~l~~~~~~~~~~~~~~~~~~~l~c~~sWi~~~~~~~~~~~~i~~~~ll~~l~~~L~~~--~~~~~a~~~l~ei~~~~ 270 (930)
.+.+ ++..++..++.++..-.... .-....+.....++.+.+.+.++ +++..|+.+|..+....
T Consensus 136 ~l~~--------~~~~~~~~a~~~L~~l~~~~---~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 201 (252)
T 4hxt_A 136 LLTS--------TDSEVQKEAARALANIASGP---DEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP 201 (252)
T ss_dssp HTTC--------SCHHHHHHHHHHHHHHTTSC---HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSB
T ss_pred HHcC--------CCHHHHHHHHHHHHHHHcCC---HHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC
Confidence 4443 24568888999988876522 10112234567888899888754 56778888888887643
No 53
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=84.87 E-value=5.8 Score=38.32 Aligned_cols=189 Identities=15% Similarity=0.051 Sum_probs=109.0
Q ss_pred ChHHHHHHHHhhccCCCCCCccchhHHhhhHHhHHHhccCcCCCChHHHHHHH-HHHHHHHHHh-cCCCHHHHHHHHHHH
Q 002370 38 TDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKDALL-NALLVAAKRF-SSGPPQLLTQICLAL 115 (930)
Q Consensus 38 s~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~ki~~~~~~l~~e~~~~lr-~~Ll~~l~~~-~~~~~~v~~kL~~~L 115 (930)
.+..+.....||.++ +.++|.-|+..|.+-... +++.+..+. ...+..+... ..++..++...+.+|
T Consensus 10 ~~~~~~~l~~LL~s~------~~~v~~~a~~~L~~l~~~-----~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L 78 (210)
T 4db6_A 10 HGSELPQMVQQLNSP------DQQELQSALRKLSQIASG-----GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWAL 78 (210)
T ss_dssp ---CHHHHHHHTTCS------CHHHHHHHHHHHHHHHTS-----CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred ccchhHHHHHHhcCC------CHHHHHHHHHHHHHHHcC-----CHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHH
Confidence 355667788888754 468999999999876643 233333333 2344444433 235678888888888
Q ss_pred HHHHHHhc------ccCchHHHHHHHhhcccCCCchhHHHHHHHhhhhcccccccccccCCCHHHHHHHHHHHHhhhhHH
Q 002370 116 SALILRAV------EHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMV 189 (930)
Q Consensus 116 a~l~~~~~------~W~~~i~~li~~~~~~~~~~~~~~~~L~iL~~l~EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~~v 189 (930)
+.++.... -....++.++..+.+. ++......+..|..+...- ...+..+ .. ..+
T Consensus 79 ~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~--~~~v~~~a~~~L~~l~~~~-----------~~~~~~~----~~--~~~ 139 (210)
T 4db6_A 79 SNIASGGNEQIQAVIDAGALPALVQLLSSP--NEQILQEALWALSNIASGG-----------NEQIQAV----ID--AGA 139 (210)
T ss_dssp HHHTTSCHHHHHHHHHTTCHHHHHHHTTCS--CHHHHHHHHHHHHHHTTSC-----------HHHHHHH----HH--TTH
T ss_pred HHHhcCCcHHHHHHHHCCCHHHHHHHHcCC--cHHHHHHHHHHHHHHHcCC-----------HHHHHHH----HH--cCc
Confidence 88875322 1356778888888653 3334445566666655321 1111111 11 123
Q ss_pred HHHHHHHHhhccCCCCCcchhhhHHHHHHHHHHHHHhccccccCcchhcccchHHHHHHhcCCC--CcHHHHHHHHHHHH
Q 002370 190 VEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSLQVQ--SSFDVAIEVLVELV 267 (930)
Q Consensus 190 ~~~l~~~l~~~~~~~~~~~~~~~~~~~l~c~~sWi~~~~~~~~~~~~i~~~~ll~~l~~~L~~~--~~~~~a~~~l~ei~ 267 (930)
+..|...+.+ ++..++..++.++..-...+. -....+.....++.+.+.+.++ ++.+.|+.+|..+.
T Consensus 140 i~~L~~ll~~--------~~~~v~~~a~~aL~~l~~~~~---~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 140 LPALVQLLSS--------PNEQILQEALWALSNIASGGN---EQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp HHHHHHHTTC--------SCHHHHHHHHHHHHHHHTSCH---HHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcC--------CCHHHHHHHHHHHHHHHcCCc---HHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 4444444443 245688899999888776321 0111234556788888888754 56677777776553
No 54
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=80.69 E-value=79 Score=35.47 Aligned_cols=295 Identities=12% Similarity=0.053 Sum_probs=154.8
Q ss_pred HHHHHHHHhccCCChHHHHHHHHHHHHhhc---Ch--------HHHHHHHHhhccCCCCCCccchhHHhhhHHhHHHhcc
Q 002370 8 KVAQAVHVLNHDTESCNRVAANQWLVQFQQ---TD--------AAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQN 76 (930)
Q Consensus 8 ~v~~av~~ly~~~d~~~~~~A~~~L~~fq~---s~--------~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~ki~~ 76 (930)
.+.+.|+.++ +.|++.+.+|-+.+.++-. .| .+-.....+|...+ +..+++-||.+|.+-...
T Consensus 77 ~l~~lv~~l~-s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~-----~~~~q~~Aa~aL~nia~~ 150 (529)
T 3tpo_A 77 SVEDIVKGIN-SNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTD-----CSPIQFESAWALTNIASG 150 (529)
T ss_dssp CHHHHHHHHT-SSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTT-----CHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHhc-CCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCC-----CHHHHHHHHHHHHHHHcC
Confidence 3666777776 5688888888888877532 22 22344566775432 468999999999886643
Q ss_pred CcCCCChHHHHHHH-HHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHhccc------CchHHHHHHHhhcccCCCc---h
Q 002370 77 EGYYLQSAAKDALL-NALLVAAKRFS-SGPPQLLTQICLALSALILRAVEH------GKPIEKLFYSLQNLQSQDN---G 145 (930)
Q Consensus 77 ~~~~l~~e~~~~lr-~~Ll~~l~~~~-~~~~~v~~kL~~~La~l~~~~~~W------~~~i~~li~~~~~~~~~~~---~ 145 (930)
+.+....+. ...+..|.... .++..++.+.+.+|..++...... ...++-++..+.....+.. .
T Consensus 151 -----~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~ 225 (529)
T 3tpo_A 151 -----TSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGY 225 (529)
T ss_dssp -----CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHH
T ss_pred -----CHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHH
Confidence 334433333 33445454432 456788999999999988643211 2334555555543110000 1
Q ss_pred hHHHHHHHhhhhcccccccccccCCCHHHHHHHHHHHHhhhhHHHHHHHHHHhhccCCCCCcchhhhHHHHHHHHHHHHH
Q 002370 146 NMAVLEMLTVLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVR 225 (930)
Q Consensus 146 ~~~~L~iL~~l~EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~c~~sWi~ 225 (930)
.......|..+...-.. .... .....++..|...+.+ ++..++..++.|+..-..
T Consensus 226 ~~~a~~~L~nl~~~~~~-------~~~~----------~~~~~~lp~L~~LL~~--------~~~~v~~~a~~aL~~l~~ 280 (529)
T 3tpo_A 226 LRNLTWTLSNLCRNKNP-------APPL----------DAVEQILPTLVRLLHH--------NDPEVLADSCWAISYLTD 280 (529)
T ss_dssp HHHHHHHHHHHHCCCTT-------CCCH----------HHHHHHHHHHHHHTTS--------SCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhcccc-------hhhH----------HHHhhHHHHHHHHhcC--------CcHHHHHHHHHHHHHhhh
Confidence 12233333443322110 0000 0122344555555544 244677777777765544
Q ss_pred hccccccCcchhcccchHHHHHHhcCCC--CcHHHHHHHHHHHHhccCChhHHHH-hhhhhhHHhhhchhhccCcHhHHh
Q 002370 226 AGCFTEISQGSLAAHPLLNFVFNSLQVQ--SSFDVAIEVLVELVGRHEGLPQALL-CRVPFLKELLLLPALTDGDEKVIG 302 (930)
Q Consensus 226 ~~~~~~~~~~~i~~~~ll~~l~~~L~~~--~~~~~a~~~l~ei~~~~~~~~~~l~-~~~~~l~~~~~~~~~~~~d~d~~~ 302 (930)
.. .-....+.....++.+...|.++ .+...|+.+|..++...+.....++ ...+. .+. ..+.+.+.+..+
T Consensus 281 ~~---~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~---~L~-~LL~~~~~~i~~ 353 (529)
T 3tpo_A 281 GP---NERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALA---VFP-SLLTNPKTNIQK 353 (529)
T ss_dssp SC---HHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGG---GHH-HHTTCSSHHHHH
T ss_pred hh---hhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHH---HHH-HHHcCCCHHHHH
Confidence 21 00011234567888888888765 4567788899888765543333332 11221 111 133455666666
Q ss_pred hHHHHHHHHHHhhh---HHHHhcChhHHHHHHHHHhcccCCCCCchhhhhcHH
Q 002370 303 GLACLMSEIGQAAP---SLIVEASPEALALADALLSCVAFPSEDWEIADSTLQ 352 (930)
Q Consensus 303 ~l~~l~~~~~e~~~---~~l~~~~~~~~~ll~~ll~~~~~p~~d~~v~~~~~~ 352 (930)
..|..+..++.... ..+.+ ..+++.++.+...+ +.++...+.-
T Consensus 354 ~a~~aL~nl~~~~~~~~~~v~~-----~g~i~~Lv~lL~~~--~~~v~~~A~~ 399 (529)
T 3tpo_A 354 EATWTMSNITAGRQDQIQQVVN-----HGLVPFLVGVLSKA--DFKTQKAAAW 399 (529)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHH-----TTHHHHHHHHHHSS--CHHHHHHHHH
T ss_pred HHHHHHHHHhcccHHHHHHHHh-----cCcHHHHHHHhcCC--CHHHHHHHHH
Confidence 66666666544322 11221 13455666666664 5666555443
No 55
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=79.94 E-value=53 Score=33.04 Aligned_cols=170 Identities=14% Similarity=0.090 Sum_probs=96.0
Q ss_pred chhHHhhhHHhHHHhccCcCCCChHHHHHHHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHHHHhcccCchHHHHHHHhhc
Q 002370 60 FEVEFFAAQILKRKIQNEGYYLQSAAKDALLNALLVAAK-RFSSGPPQLLTQICLALSALILRAVEHGKPIEKLFYSLQN 138 (930)
Q Consensus 60 ~~v~ffaA~tL~~ki~~~~~~l~~e~~~~lr~~Ll~~l~-~~~~~~~~v~~kL~~~La~l~~~~~~W~~~i~~li~~~~~ 138 (930)
..-+.=|...|...+.. .++.....-+-++.|+. ++...+..|..+....|..++-.+..
T Consensus 60 ~k~~~~ale~L~~~l~~-----~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~-------------- 120 (266)
T 2of3_A 60 FKQHLAALDSLVRLADT-----SPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRD-------------- 120 (266)
T ss_dssp HHHHHHHHHHHHHHHHH-----CHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHH--------------
T ss_pred HHHHHHHHHHHHHHhhh-----ChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHh--------------
Confidence 45555566777666543 23333444455677775 45556777877877777776644321
Q ss_pred ccCCCchhHHHHHHHhhhhcccccccccccCCCHHHHHHHHHHHH---h--hhhHHHHHHHHHHhhccCCCCCcchhhhH
Q 002370 139 LQSQDNGNMAVLEMLTVLPEEVIDSQASDCNISSAHRSQYGQELL---S--HTPMVVEFLMQQSDKRFDGGVPVQLHDRN 213 (930)
Q Consensus 139 ~~~~~~~~~~~L~iL~~l~EE~~~~~~~~~~l~~~~r~~~~~~l~---~--~~~~v~~~l~~~l~~~~~~~~~~~~~~~~ 213 (930)
.+ ....-.-.-.++-.|-|-++|. .+.-|..+++.+. . ....|+.++...+.+ .+...+
T Consensus 121 ~~-y~~~~~ea~~~lP~LveKlGd~-------k~~vR~~~r~il~~l~~v~~~~~v~~~l~~g~ks--------KN~R~R 184 (266)
T 2of3_A 121 TE-TPMSQEEVSAFVPYLLLKTGEA-------KDNMRTSVRDIVNVLSDVVGPLKMTPMLLDALKS--------KNARQR 184 (266)
T ss_dssp TT-CCCCHHHHHHHHHHHHHGGGCS-------SHHHHHHHHHHHHHHHHHHCHHHHHHHHHHGGGC--------SCHHHH
T ss_pred cc-ccchHHHHHHHHHHHHHHhCCC-------hHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHcc--------CCHHHH
Confidence 00 0000001122333444444432 1223333333332 2 234577777776654 345789
Q ss_pred HHHHHHHHHHHHhccccccCcchhcccchH---HHHHHhcCCC--CcHHHHHHHHHHHHhccCC
Q 002370 214 RKILRCLLSWVRAGCFTEISQGSLAAHPLL---NFVFNSLQVQ--SSFDVAIEVLVELVGRHEG 272 (930)
Q Consensus 214 ~~~l~c~~sWi~~~~~~~~~~~~i~~~~ll---~~l~~~L~~~--~~~~~a~~~l~ei~~~~~~ 272 (930)
..++.++.+-+.-. +++. ...+ +.+...+.|+ +++++|+.|++++.....+
T Consensus 185 ~e~l~~l~~li~~~---G~~~-----~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd 240 (266)
T 2of3_A 185 SECLLVIEYYITNA---GISP-----LKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGD 240 (266)
T ss_dssp HHHHHHHHHHHHHH---CSGG-----GGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhc---CCCc-----cccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhH
Confidence 99999999999642 2232 2245 7778888765 6899999999998875443
No 56
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=78.40 E-value=80 Score=38.28 Aligned_cols=233 Identities=14% Similarity=0.139 Sum_probs=122.4
Q ss_pred hHHHHHHHhhhhccccCCCccchhHHHHHHHHh----ccCchhhhhhHHHHHHHHHHHHHHhhHHHHHhchhchHHHHHH
Q 002370 458 ETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVL----SASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLF 533 (930)
Q Consensus 458 Ea~L~~l~~iae~~~~~~~~~~l~~i~~~l~~l----~~~~~~~~~~~~~v~~~t~~~~ig~y~~wl~~~p~~L~~vl~~ 533 (930)
|+++.+++++++....... . =|.++.++..+ .+... . |+.++ -..+..+.. ..+|+-+..+|+.
T Consensus 70 ~~a~~~~~~~~~~~~~~~~-~-e~~~~~~~~~~~~~~~dk~~-~------v~~aa-~~~~~~~~~--~~~~~a~~~~~~~ 137 (986)
T 2iw3_A 70 ANAMQAVAHIANQSNLSPS-V-EPYIVQLVPAICTNAGNKDK-E------IQSVA-SETLISIVN--AVNPVAIKALLPH 137 (986)
T ss_dssp HHHHHHHHHHTCTTTCCTT-T-HHHHHTTHHHHHHHTTCSSH-H------HHHHH-HHHHHHHHH--HSCGGGHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCC-c-ccchHHHHHHHHHHhcCCch-H------HHHHH-HHHHHHHHH--hCCHHHHHHHHHH
Confidence 9999999999876542111 1 14444444333 22221 1 33322 233333332 3467778889999
Q ss_pred HHHhccccc---hhHHHHHHHHHHHHHhhcccCCCccHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHccCCchHHHHH
Q 002370 534 LAAGISEAV---SSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGSVSNKELKNN 610 (930)
Q Consensus 534 l~~~l~~p~---v~~~Aa~al~~lc~~c~~~l~~p~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~ 610 (930)
++.++.... .+..|...+.++++.++..+. ..++.+.-+.... -.+.+.+....-.+++-.+.+.+...+ .
T Consensus 138 ~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~--~~~~~~~p~~~~~-~~d~k~~v~~~~~~~~~~~~~~~~n~d-~-- 211 (986)
T 2iw3_A 138 LTNAIVETNKWQEKIAILAAFSAMVDAAKDQVA--LRMPELIPVLSET-MWDTKKEVKAAATAAMTKATETVDNKD-I-- 211 (986)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHH--HHHHHHHHHHHHH-TTCSSHHHHHHHHHHHHHHGGGCCCTT-T--
T ss_pred HHHHhccccchHHHHHHHHHHHHHHHHhHHHHH--HhccchhcchHhh-cccCcHHHHHHHHHHHHHHHhcCCCcc-h--
Confidence 998886542 577888889999998876553 2444444433321 133455555544555555554444433 1
Q ss_pred HHHHHHHHHHHHHHhhhhccCCCCCCCCchhhHHHHHHhHHHHHhhhcccccccccCCCCCCCCchHHHHHHHHHHHHHH
Q 002370 611 LLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEK 690 (930)
Q Consensus 611 ~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~l~~i~~~l~~~~~~~~~~~~p~~~~~~~i~~~l~~ 690 (930)
+ |.+..|-.++..+ .. +-.+++.|+.. .+... -..|.+.+ +.|++..
T Consensus 212 --~----~~~~~~~~~~~~p---------~~-------~~~~~~~l~~~--tfv~~------v~~~~l~~---~~p~l~r 258 (986)
T 2iw3_A 212 --E----RFIPSLIQCIADP---------TE-------VPETVHLLGAT--TFVAE------VTPATLSI---MVPLLSR 258 (986)
T ss_dssp --G----GGHHHHHHHHHCT---------TH-------HHHHHHHHTTC--CCCSC------CCHHHHHH---HHHHHHH
T ss_pred --h----hhHHHHHHHhcCh---------hh-------hHHHHHHhhcC--eeEee------ecchhHHH---HHHHHHh
Confidence 1 2222333333322 11 22356666421 11111 12454444 4599888
Q ss_pred HHHhhhccchHHHHHHHHHHHHHHHHh--hhhhHhhHHHHHHHHHHhhhhhCCcchH
Q 002370 691 LFRSEHMENGNLSTAACRALSLAIQSS--GQHFVTLLPQVLDCLSTNFVSFQNHECY 745 (930)
Q Consensus 691 i~~~~~~~~~~v~e~~c~~~~~~i~~l--~~~~~p~l~~l~~~l~~~~~~~~~~~~~ 745 (930)
-+.. ....+--+++-++.++-+-. .....||+|.+++.+-..+... ..|..
T Consensus 259 ~l~~---~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~-~~pe~ 311 (986)
T 2iw3_A 259 GLNE---RETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATI-ADPEA 311 (986)
T ss_dssp HHTS---SSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTTC-CSHHH
T ss_pred hhcc---CcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhcc-CCHHH
Confidence 8752 23334345555555544433 2356789998888887766543 45544
No 57
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=78.07 E-value=2.8 Score=40.67 Aligned_cols=140 Identities=16% Similarity=0.038 Sum_probs=75.3
Q ss_pred CCCchhhhHHHHHHHhhhhccccCCCccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHhchhch--H
Q 002370 451 PIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNA--R 528 (930)
Q Consensus 451 ~~~W~~~Ea~L~~l~~iae~~~~~~~~~~l~~i~~~l~~l~~~~~~~~~~~~~v~~~t~~~~ig~y~~wl~~~p~~L--~ 528 (930)
+.++...+.++++|+.++..-++.-....-...++.+..+..++... ++..+ +++++..+..-..+.+.+ .
T Consensus 23 s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~------v~~~a-~~~L~~l~~~~~~~~~~i~~~ 95 (210)
T 4db6_A 23 SPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQ------ILQEA-LWALSNIASGGNEQIQAVIDA 95 (210)
T ss_dssp CSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHH------HHHHH-HHHHHHHTTSCHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHH------HHHHH-HHHHHHHhcCCcHHHHHHHHC
Confidence 35688889999999999854321100000001233333333343322 44444 588888763211111111 1
Q ss_pred HHHHHHHHhccc--cchhHHHHHHHHHHHHHhhcc---cCCCccHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHccC
Q 002370 529 PLLLFLAAGISE--AVSSNACASALRKICEDASAL---IDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGSV 602 (930)
Q Consensus 529 ~vl~~l~~~l~~--p~v~~~Aa~al~~lc~~c~~~---l~~p~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~vi~~~ 602 (930)
.+++.++..+.+ +.++..|+.++.++|...... +.....++.|..+ +.. -+.+.+...+.+++.+...-
T Consensus 96 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l---l~~--~~~~v~~~a~~aL~~l~~~~ 169 (210)
T 4db6_A 96 GALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQL---LSS--PNEQILQEALWALSNIASGG 169 (210)
T ss_dssp TCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHH---TTC--SCHHHHHHHHHHHHHHHTSC
T ss_pred CCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHH---HcC--CCHHHHHHHHHHHHHHHcCC
Confidence 355666776765 458999999999999543321 1111123333333 222 25677888888999888643
No 58
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=77.98 E-value=32 Score=33.97 Aligned_cols=214 Identities=15% Similarity=0.096 Sum_probs=119.3
Q ss_pred HHHHHhccCCChHHHHHHHHHHHH-hhcCh---------HHHHHHHHhhccCCCCCCccchhHHhhhHHhHHHhccCcCC
Q 002370 11 QAVHVLNHDTESCNRVAANQWLVQ-FQQTD---------AAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYY 80 (930)
Q Consensus 11 ~av~~ly~~~d~~~~~~A~~~L~~-fq~s~---------~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~ki~~~~~~ 80 (930)
..+.-|. ++|++.|..|-..|.. +.+++ .+......+|.++ +.+++..|+.+|.+-...
T Consensus 16 ~~~~~L~-s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~------~~~v~~~a~~~L~~l~~~---- 84 (252)
T 4db8_A 16 QMTQQLN-SDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSP------NEQILQEALWALSNIASG---- 84 (252)
T ss_dssp HHHHHHH-SSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCS------CHHHHHHHHHHHHHHTTS----
T ss_pred HHHHHHc-CCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCC------CHHHHHHHHHHHHHHhcC----
Confidence 3344444 5566777777777743 33222 3445566777653 368999999999877653
Q ss_pred CChHHHHHHHH-HHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHhc------ccCchHHHHHHHhhcccCCCchhHHHHHH
Q 002370 81 LQSAAKDALLN-ALLVAAKRFS-SGPPQLLTQICLALSALILRAV------EHGKPIEKLFYSLQNLQSQDNGNMAVLEM 152 (930)
Q Consensus 81 l~~e~~~~lr~-~Ll~~l~~~~-~~~~~v~~kL~~~La~l~~~~~------~W~~~i~~li~~~~~~~~~~~~~~~~L~i 152 (930)
+++.+..+.+ ..+..+...- .++..++...+.+|..+..... .-...++.++..+... ++......+..
T Consensus 85 -~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~--~~~v~~~a~~~ 161 (252)
T 4db8_A 85 -GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP--NEQILQEALWA 161 (252)
T ss_dssp -CHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCS--CHHHHHHHHHH
T ss_pred -CHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCC--CHHHHHHHHHH
Confidence 2334433333 2555554432 3567888888888888864322 1235667777777542 33334455666
Q ss_pred HhhhhcccccccccccCCCHHHHHHHHHHHHhhhhHHHHHHHHHHhhccCCCCCcchhhhHHHHHHHHHHHHHhcccccc
Q 002370 153 LTVLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEI 232 (930)
Q Consensus 153 L~~l~EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~c~~sWi~~~~~~~~ 232 (930)
|..+...- +..+.. +.. ..++..|...+.. ++..++..++.++..-.... .-
T Consensus 162 L~~l~~~~-----------~~~~~~----~~~--~~~i~~L~~ll~~--------~~~~v~~~a~~~L~~l~~~~---~~ 213 (252)
T 4db8_A 162 LSNIASGG-----------NEQIQA----VID--AGALPALVQLLSS--------PNEQILQEALWALSNIASGG---NE 213 (252)
T ss_dssp HHHHTTSC-----------HHHHHH----HHH--TTCHHHHHHGGGC--------SSHHHHHHHHHHHHHHTTSC---HH
T ss_pred HHHHHcCC-----------hHHHHH----HHH--CCCHHHHHHHHCC--------CCHHHHHHHHHHHHHHhcCC---HH
Confidence 66655321 111111 111 1233444444443 24568888888888766421 00
Q ss_pred CcchhcccchHHHHHHhcCC--CCcHHHHHHHHHHH
Q 002370 233 SQGSLAAHPLLNFVFNSLQV--QSSFDVAIEVLVEL 266 (930)
Q Consensus 233 ~~~~i~~~~ll~~l~~~L~~--~~~~~~a~~~l~ei 266 (930)
....+.....++.+.+.+.+ ++++..|+.+|..+
T Consensus 214 ~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l 249 (252)
T 4db8_A 214 QKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKL 249 (252)
T ss_dssp HHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTT
T ss_pred HHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 11123455677888887764 45567777777554
No 59
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=76.74 E-value=44 Score=40.53 Aligned_cols=208 Identities=12% Similarity=0.073 Sum_probs=113.1
Q ss_pred hhhhHHHHHHHhhhhccccCCCccchhHHHH-HHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHhchh----chHH
Q 002370 455 KEVETKLFALNVVSEVVLQEGQAFDFSVIMQ-LVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQT----NARP 529 (930)
Q Consensus 455 ~~~Ea~L~~l~~iae~~~~~~~~~~l~~i~~-~l~~l~~~~~~~~~~~~~v~~~t~~~~ig~y~~wl~~~p~----~L~~ 529 (930)
.-.+|+-.++.++...++.+. +..+++ ++..+....+=+ ... .++.+++++.+ ..|+ .++.
T Consensus 110 ~v~~aa~~~~~~~~~~~~~~a----~~~~~~~~~~~~~~~~kw~------~k~-~~l~~~~~~~~---~~~~~~~~~~~~ 175 (986)
T 2iw3_A 110 EIQSVASETLISIVNAVNPVA----IKALLPHLTNAIVETNKWQ------EKI-AILAAFSAMVD---AAKDQVALRMPE 175 (986)
T ss_dssp HHHHHHHHHHHHHHHHSCGGG----HHHHHHHHHHHHHHCCCHH------HHH-HHHHHHHHHHH---HSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHH----HHHHHHHHHHHhccccchH------HHH-HHHHHHHHHHH---HhHHHHHHhccc
Confidence 456889999999988887533 233332 333443221111 112 23577777664 3465 5678
Q ss_pred HHHHHHHhccc--cchhHHHHHHHHHHHHHhhcccCCCccHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHccCCchHH
Q 002370 530 LLLFLAAGISE--AVSSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGSVSNKEL 607 (930)
Q Consensus 530 vl~~l~~~l~~--p~v~~~Aa~al~~lc~~c~~~l~~p~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~vi~~~p~~~~ 607 (930)
+++.+..++.+ |+|+.+|..++.++|.-....-.. .+.|.|..+... ++. +-|+|-.+.+.-=..+
T Consensus 176 ~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~-~~~~~~~~~~~~-------p~~---~~~~~~~l~~~tfv~~- 243 (986)
T 2iw3_A 176 LIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIE-RFIPSLIQCIAD-------PTE---VPETVHLLGATTFVAE- 243 (986)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTG-GGHHHHHHHHHC-------TTH---HHHHHHHHTTCCCCSC-
T ss_pred hhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcchh-hhHHHHHHHhcC-------hhh---hHHHHHHhhcCeeEee-
Confidence 88888888887 679999999999999766553333 367777666552 333 3344333332200000
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccCCCCCCCCchhhHHHHHHhHHHHHhhhcccccccccCCCCCCCCchHHHHHHHHHHH
Q 002370 608 KNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFWPM 687 (930)
Q Consensus 608 ~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~l~~i~~~l~~~~~~~~~~~~p~~~~~~~i~~~ 687 (930)
....--.++-|++.+= ++.. ..... .+..-.++.++++... +..+.+.+-+++|-
T Consensus 244 v~~~~l~~~~p~l~r~---l~~~--------~~~~~---r~~~~~~~n~~~lv~~-----------~~~~~~f~~~l~p~ 298 (986)
T 2iw3_A 244 VTPATLSIMVPLLSRG---LNER--------ETGIK---RKSAVIIDNMCKLVED-----------PQVIAPFLGKLLPG 298 (986)
T ss_dssp CCHHHHHHHHHHHHHH---HTSS--------SHHHH---HHHHHHHHHHHTTCCC-----------HHHHHHHHTTTHHH
T ss_pred ecchhHHHHHHHHHhh---hccC--------cchhh---eeeEEEEcchhhhcCC-----------HHHHhhhhhhhhhH
Confidence 1111235666777652 1111 00110 1234456666544321 12245566667777
Q ss_pred HHHHHHhhhccchHHHHHHHHHHHHHHH
Q 002370 688 LEKLFRSEHMENGNLSTAACRALSLAIQ 715 (930)
Q Consensus 688 l~~i~~~~~~~~~~v~e~~c~~~~~~i~ 715 (930)
++.+.. -..+++++|.+-+.++...+
T Consensus 299 ~~~~~~--~~~~pe~r~~~~~a~~~l~~ 324 (986)
T 2iw3_A 299 LKSNFA--TIADPEAREVTLRALKTLRR 324 (986)
T ss_dssp HHHHTT--TCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHhh--ccCCHHHHHHHHHHHHHHHH
Confidence 777764 34677777666555555444
No 60
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=73.92 E-value=14 Score=34.60 Aligned_cols=118 Identities=14% Similarity=0.107 Sum_probs=77.0
Q ss_pred HHHHHHhhhhccccCCCccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHhchhchHHHHHHHHHhcc
Q 002370 460 KLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGIS 539 (930)
Q Consensus 460 ~L~~l~~iae~~~~~~~~~~l~~i~~~l~~l~~~~~~~~~~~~~v~~~t~~~~ig~y~~wl~~~p~~L~~vl~~l~~~l~ 539 (930)
.-|+++-|+..-++ . ++.++.=+..+.+.|... . +. +++.+|+... ..|++|..+-|+-++.-++
T Consensus 127 ~~yaLeeIaranP~----l-~~~v~rdi~smltskd~~-D-----kl-~aLnFi~alG---en~~~yv~PfLprL~aLL~ 191 (253)
T 2db0_A 127 VSYALEEIAKANPM----L-MASIVRDFMSMLSSKNRE-D-----KL-TALNFIEAMG---ENSFKYVNPFLPRIINLLH 191 (253)
T ss_dssp HHHHHHHHHHHCHH----H-HHHHHHHHHHHTSCSSHH-H-----HH-HHHHHHHTCC---TTTHHHHGGGHHHHHGGGG
T ss_pred HHHHHHHHHHhChH----H-HHHHHHHHHHHhcCCChH-H-----HH-HHHHHHHHHh---ccCccccCcchHHHHHHHc
Confidence 45777777665432 1 455665444555544322 1 33 3468888887 4789999999999999998
Q ss_pred ccc--hhHHHHHHHHHHHHHhhcccCCCccHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHc
Q 002370 540 EAV--SSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILG 600 (930)
Q Consensus 540 ~p~--v~~~Aa~al~~lc~~c~~~l~~p~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~vi~ 600 (930)
+.+ |+.+|..++-+++...++ .-..+....+.+ .+-+...+..+.||++.++-
T Consensus 192 D~deiVRaSaVEtL~~lA~~npk------lRkii~~kl~e~--~D~S~lv~~~V~egL~rl~l 246 (253)
T 2db0_A 192 DGDEIVRASAVEALVHLATLNDK------LRKVVIKRLEEL--NDTSSLVNKTVKEGISRLLL 246 (253)
T ss_dssp CSSHHHHHHHHHHHHHHHTSCHH------HHHHHHHHHHHC--CCSCHHHHHHHHHHHHHHHH
T ss_pred CcchhhhHHHHHHHHHHHHcCHH------HHHHHHHHHHHh--cCcHHHHHHHHHHHHHHHHH
Confidence 755 899999999999864443 222333333332 23356778899999998864
No 61
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=72.32 E-value=14 Score=38.28 Aligned_cols=136 Identities=10% Similarity=-0.020 Sum_probs=73.8
Q ss_pred CCchhhhHHHHHHHhhhhccccCCC----ccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHhchh-c
Q 002370 452 IPWKEVETKLFALNVVSEVVLQEGQ----AFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQT-N 526 (930)
Q Consensus 452 ~~W~~~Ea~L~~l~~iae~~~~~~~----~~~l~~i~~~l~~l~~~~~~~~~~~~~v~~~t~~~~ig~y~~wl~~~p~-~ 526 (930)
.+-.-.+.++++++.++..-+.... ...++.+++++ .+.+... ++..+ +++|+..+.-....++ +
T Consensus 94 ~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL---~~~~~~~------v~~~A-~~ALsnl~~~~~~~~~~~ 163 (296)
T 1xqr_A 94 GAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLL---DRDACDT------VRVKA-LFAISCLVREQEAGLLQF 163 (296)
T ss_dssp SSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH---HHCSCHH------HHHHH-HHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHH---ccCCCHH------HHHHH-HHHHHHHHcCCcHHHHHH
Confidence 3456778999999999764331100 00123333333 2232222 34433 5788776531111111 2
Q ss_pred h-HHHHHHHHHhccc--cchhHHHHHHHHHHHHHhhc---ccCCCccHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHc
Q 002370 527 A-RPLLLFLAAGISE--AVSSNACASALRKICEDASA---LIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILG 600 (930)
Q Consensus 527 L-~~vl~~l~~~l~~--p~v~~~Aa~al~~lc~~c~~---~l~~p~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~vi~ 600 (930)
. ...++.|+..+.+ +.++..|+.++.++|..-.. .+.....++.|.. .+... +...+.....+++.++.
T Consensus 164 ~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~---LL~~~--d~~v~~~al~aL~~l~~ 238 (296)
T 1xqr_A 164 LRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVA---LVRTE--HSPFHEHVLGALCSLVT 238 (296)
T ss_dssp HHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHH---HHTSC--CSTHHHHHHHHHHHHHT
T ss_pred HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHH---HHcCC--ChhHHHHHHHHHHHHHh
Confidence 2 1355666666654 55999999999999976322 1111112233333 33222 56788999999999997
Q ss_pred cC
Q 002370 601 SV 602 (930)
Q Consensus 601 ~~ 602 (930)
.-
T Consensus 239 ~~ 240 (296)
T 1xqr_A 239 DF 240 (296)
T ss_dssp TC
T ss_pred CC
Confidence 73
No 62
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=71.94 E-value=69 Score=30.41 Aligned_cols=179 Identities=17% Similarity=0.076 Sum_probs=102.1
Q ss_pred HHHHHHHhccCCChHHHHHHHHHHHHhhcChHHHHHHHHhhccCCCCCCccchhHHhhhHHhHHHhccCcCCCChHHHHH
Q 002370 9 VAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKDA 88 (930)
Q Consensus 9 v~~av~~ly~~~d~~~~~~A~~~L~~fq~s~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~ki~~~~~~l~~e~~~~ 88 (930)
+...+..| .++|+..|..|-..|.++.. +++......+|.++ +..+|..|+..|...- +++...
T Consensus 21 ~~~L~~~L-~~~~~~vR~~A~~~L~~~~~-~~~~~~L~~~l~~~------~~~vr~~a~~aL~~~~-------~~~~~~- 84 (211)
T 3ltm_A 21 VEMYIKNL-QDDSYYVRRAAAYALGKIGD-ERAVEPLIKALKDE------DAWVRRAAADALGQIG-------DERAVE- 84 (211)
T ss_dssp HHHHHHHT-TCSSHHHHHHHHHHHHHHCC-GGGHHHHHHHTTCS------CHHHHHHHHHHHHHHC-------CGGGHH-
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHcCC------CHHHHHHHHHHHHhhC-------CHHHHH-
Confidence 44444444 47889999999999999875 67778888888753 3689999999886532 122222
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcccCchHHHHHHHhhcccCCCchhHHHHHHHhhhhcc-cccc--cc
Q 002370 89 LLNALLVAAKRFSSGPPQLLTQICLALSALILRAVEHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEE-VIDS--QA 165 (930)
Q Consensus 89 lr~~Ll~~l~~~~~~~~~v~~kL~~~La~l~~~~~~W~~~i~~li~~~~~~~~~~~~~~~~L~iL~~l~EE-~~~~--~~ 165 (930)
.|+..+ ...+..|+...+.+|+.+. .+..++.++..+... ++.........|..+.++ .... +.
T Consensus 85 ---~L~~~l---~~~~~~vr~~a~~aL~~~~-----~~~~~~~L~~~l~d~--~~~vr~~a~~aL~~~~~~~~~~~L~~~ 151 (211)
T 3ltm_A 85 ---PLIKAL---KDEDGWVRQSAAVALGQIG-----DERAVEPLIKALKDE--DWFVRIAAAFALGEIGDERAVEPLIKA 151 (211)
T ss_dssp ---HHHHHT---TCSSHHHHHHHHHHHHHHC-----CGGGHHHHHHHTTCS--SHHHHHHHHHHHHHHCCGGGHHHHHHH
T ss_pred ---HHHHHH---cCCCHHHHHHHHHHHHHhC-----cHHHHHHHHHHHhCC--CHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 233332 2355678877777776552 345677777766542 222333444444444322 0000 00
Q ss_pred cccCCCHHHHHHHHHHHHh-hhhHHHHHHHHHHhhccCCCCCcchhhhHHHHHHHHHHHHH
Q 002370 166 SDCNISSAHRSQYGQELLS-HTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVR 225 (930)
Q Consensus 166 ~~~~l~~~~r~~~~~~l~~-~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~c~~sWi~ 225 (930)
+.. -....|......|.. ..+.++..|...+.. ++..++..+.+++...-.
T Consensus 152 l~d-~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d--------~~~~vr~~A~~aL~~~~~ 203 (211)
T 3ltm_A 152 LKD-EDGWVRQSAADALGEIGGERVRAAMEKLAET--------GTGFARKVAVNYLETHKS 203 (211)
T ss_dssp TTC-SSHHHHHHHHHHHHHHCSHHHHHHHHHHHHH--------CCHHHHHHHHHHHHC---
T ss_pred HcC-CCHHHHHHHHHHHHHhCchhHHHHHHHHHhC--------CCHHHHHHHHHHHHhcCC
Confidence 000 123345555555555 345667777776664 245688888888775543
No 63
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=71.59 E-value=83 Score=31.59 Aligned_cols=97 Identities=9% Similarity=0.081 Sum_probs=64.8
Q ss_pred CchhhhhcHHHHHHHHHHhhccchhhhhhhhhhhhhcHHH-HHHHHHHHHHHhccCCCCCCCCCCCCCCchHHHHHHHHH
Q 002370 343 DWEIADSTLQFWSTLASYILGLDASIAKNKKHVEDMFFSV-FSALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLV 421 (930)
Q Consensus 343 d~~v~~~~~~fW~~l~~~l~~~~~~~~~~~~~~~~~~~~~-~~~Ll~~l~~k~~~p~~~~~~~~~~d~~d~f~~~R~~~~ 421 (930)
+..+...++++-..+.+.+.+.+ ..+.++ ...+++.++.|+- |.. ..+|..+.
T Consensus 100 N~~v~~~~L~~L~~l~~~l~~~~-----------y~~~~~ea~~~lP~LveKlG------------d~k---~~vR~~~r 153 (266)
T 2of3_A 100 NPAALIKVLELCKVIVELIRDTE-----------TPMSQEEVSAFVPYLLLKTG------------EAK---DNMRTSVR 153 (266)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTT-----------CCCCHHHHHHHHHHHHHGGG------------CSS---HHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHhcc-----------ccchHHHHHHHHHHHHHHhC------------CCh---HHHHHHHH
Confidence 46677788888777666543210 122222 3567788888882 112 35788888
Q ss_pred HHHHHHHHhcCchHHHHHHHHhhhcCCCCCCCchhhhHHHHHHHhhhhc
Q 002370 422 ELLVDICQLLRSATFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEV 470 (930)
Q Consensus 422 d~l~~~~~~l~~~~~l~~~~~~~~~~~~~~~~W~~~Ea~L~~l~~iae~ 470 (930)
+++..++.+.++..++..+.+.+. +-+|+..|.||..++++-+.
T Consensus 154 ~il~~l~~v~~~~~v~~~l~~g~k-----sKN~R~R~e~l~~l~~li~~ 197 (266)
T 2of3_A 154 DIVNVLSDVVGPLKMTPMLLDALK-----SKNARQRSECLLVIEYYITN 197 (266)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHGGG-----CSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHc-----cCCHHHHHHHHHHHHHHHHh
Confidence 888888888776667777766552 34699999999999987553
No 64
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=71.49 E-value=95 Score=31.79 Aligned_cols=183 Identities=16% Similarity=0.165 Sum_probs=103.6
Q ss_pred hHHHHHHHHHHHhccC-----------CChHHHHHHHHHHHHhhcCh---------HHHHHHHH-hhccCCCCCCccchh
Q 002370 4 DLQIKVAQAVHVLNHD-----------TESCNRVAANQWLVQFQQTD---------AAWEIATS-ILTSDRQSFLTDFEV 62 (930)
Q Consensus 4 ~~~~~v~~av~~ly~~-----------~d~~~~~~A~~~L~~fq~s~---------~aW~~~~~-LL~~~~~~~~~~~~v 62 (930)
+..+++.+++..|-++ .+.+.|..|-.-|..+-... .+|..... +|.++ +.++
T Consensus 25 d~~~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~------~~~v 98 (296)
T 1xqr_A 25 GEVEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAG------AAGL 98 (296)
T ss_dssp HHHHHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCS------SHHH
T ss_pred CHHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCC------CHHH
Confidence 3466788888888643 12246777777777766542 35666777 88654 4699
Q ss_pred HHhhhHHhHHHhccCcCCCChHHHHHHH-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcc------cCchHHH
Q 002370 63 EFFAAQILKRKIQNEGYYLQSAAKDALL-----NALLVAAKRFSSGPPQLLTQICLALSALILRAVE------HGKPIEK 131 (930)
Q Consensus 63 ~ffaA~tL~~ki~~~~~~l~~e~~~~lr-----~~Ll~~l~~~~~~~~~v~~kL~~~La~l~~~~~~------W~~~i~~ 131 (930)
|-.|+.+|.+-... +++.+..+. ..|+..+.. ..+..++++.+-+|+.++....+ -.+.++-
T Consensus 99 r~~Aa~~Lg~ia~~-----n~~~~~~vv~~g~l~~Ll~LL~~--~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~ 171 (296)
T 1xqr_A 99 RWRAAQLIGTCSQN-----VAAIQEQVLGLGALRKLLRLLDR--DACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSV 171 (296)
T ss_dssp HHHHHHHHHHHHTT-----CHHHHHHHHHTTHHHHHHHHHHH--CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHhC-----CHHHHHHHHHCCCHHHHHHHHcc--CCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHH
Confidence 99999999887754 233333332 234444432 23567999999999998754321 1245666
Q ss_pred HHHHhhcccCCCchhHHHHHHHhhhhcccccccccccCCCHHHHHHHHHHHHhhhhHHHHHHHHHHhhccCCCCCcchhh
Q 002370 132 LFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHD 211 (930)
Q Consensus 132 li~~~~~~~~~~~~~~~~L~iL~~l~EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~ 211 (930)
++..+++. +.....-....|+.+...- ...+..+.+ ....+.++.+ +.. ++..
T Consensus 172 L~~lL~~~--d~~v~~~A~~aLs~L~~~~-----------~~~~~~vv~--~g~i~~Lv~L----L~~--------~d~~ 224 (296)
T 1xqr_A 172 LMRAMQQQ--VQKLKVKSAFLLQNLLVGH-----------PEHKGTLCS--MGMVQQLVAL----VRT--------EHSP 224 (296)
T ss_dssp HHHHHHSS--CHHHHHHHHHHHHHHHHHC-----------GGGHHHHHH--TTHHHHHHHH----HTS--------CCST
T ss_pred HHHHHcCC--CHHHHHHHHHHHHHHHhCC-----------hHHHHHHHH--cCCHHHHHHH----HcC--------CChh
Confidence 66666542 2222233444444444220 011111111 0123344443 333 2346
Q ss_pred hHHHHHHHHHHHHHh
Q 002370 212 RNRKILRCLLSWVRA 226 (930)
Q Consensus 212 ~~~~~l~c~~sWi~~ 226 (930)
++..++.++.+-+..
T Consensus 225 v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 225 FHEHVLGALCSLVTD 239 (296)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhC
Confidence 888999999888773
No 65
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=71.46 E-value=1.2e+02 Score=33.07 Aligned_cols=132 Identities=11% Similarity=0.097 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHHh--hhc-cchHHHHHHHHHHHHHHHHh--hhhhHhhHHHHHHHHHHhhhhhCCcc-----hHHHHHH
Q 002370 681 LRVFWPMLEKLFRS--EHM-ENGNLSTAACRALSLAIQSS--GQHFVTLLPQVLDCLSTNFVSFQNHE-----CYIRTAS 750 (930)
Q Consensus 681 ~~~i~~~l~~i~~~--~~~-~~~~v~e~~c~~~~~~i~~l--~~~~~p~l~~l~~~l~~~~~~~~~~~-----~~L~l~~ 750 (930)
.+++..++...... .|. .|.+.+++...|+++++..+ +.+...|+.-+++.++-.+..- +.+ -=|.++.
T Consensus 213 ~qeLv~ii~eQa~L~~~f~~sD~e~vdRlI~C~~~ALP~FS~~v~StkFv~y~~~kIlP~l~~L-~e~~~~~~~kL~LLK 291 (507)
T 3u0r_A 213 RQQLVELVAEQADLEQTFNPSDPDCVDRLLQCTRQAVPLFSKNVHSTRFVTYFCEQVLPNLGTL-TTPVEGLDIQLEVLK 291 (507)
T ss_dssp HHHHHHHHHHHHTTTSCCCSSCHHHHHHHHHHHHHHGGGCBTTBCCHHHHHHHHHHTGGGTTCC-CCC--CCCHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCCCcCHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHhhccchhhc-cccccchHHHHHHHH
Confidence 36667777766532 244 78999999999999997754 4456678888888877666533 222 2356666
Q ss_pred HHHHH--h-cCCCCccchHHHHHHHHhhhHHHHHhhcC-----CCCCCCCch----HHHHHHHHHHHHhhhhHHHHh
Q 002370 751 VVIEE--F-GHKDEYGPLFVTTFERFSQAASVRALNSS-----YICDQEPDL----VEAYTNFASTFVRTSRKEVLA 815 (930)
Q Consensus 751 ~li~~--f-g~~~~~~~~l~~l~~~l~~~~~~~~l~~~-----~~~~~~pD~----~~~~f~l~~~~l~~~p~~~~~ 815 (930)
.+... | |+.+.-...+..++..|... ++..... +...+.|++ ++.++-.++++.+++|..+..
T Consensus 292 ~lAE~s~~~~~~e~a~~~l~~iy~~L~~y--mP~~p~~~~~~~~~~~~~p~l~fS~vECLLy~fH~L~~k~P~~l~e 366 (507)
T 3u0r_A 292 LLAEMSSFCGDMEKLETNLRKLFDKLLEY--MPLPPEEAENGENAGNEEPKLQFSYVECLLYSFHQLGRKLPDFLTA 366 (507)
T ss_dssp HHHHHHTTCCCCTTHHHHHHHHHHHHHTT--SCCCC--------------CCCHHHHHHHHHHHHHHHTTCTHHHHC
T ss_pred HHHHHccCCCccchHHHHHHHHHHHHHHH--CCCCcccccccccccccCcccchhHHHHHHHHHHHHhhhChhhhcc
Confidence 65542 2 32222222344444433221 1100000 000122333 678888899999999999865
No 66
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=70.80 E-value=1.3e+02 Score=33.20 Aligned_cols=257 Identities=14% Similarity=0.046 Sum_probs=127.3
Q ss_pred HHHHHHHhhccCCCCCCccchhHHhhhHHhHHHhccCcCCCChHHHH------HHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 002370 41 AWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKD------ALLNALLVAAKRFSSGPPQLLTQICLA 114 (930)
Q Consensus 41 aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~ki~~~~~~l~~e~~~------~lr~~Ll~~l~~~~~~~~~v~~kL~~~ 114 (930)
+......+|.++ +..+|..|+.+|.+-...+ +.+. +.-..|+..+.. ..+..++...+.+
T Consensus 18 ~i~~Lv~lL~~~------~~~v~~~A~~~L~~l~~~~------~~~~~~~~~~~~i~~Lv~~L~~--~~~~~~~~~a~~~ 83 (529)
T 1jdh_A 18 AIPELTKLLNDE------DQVVVNKAAVMVHQLSKKE------ASRHAIMRSPQMVSAIVRTMQN--TNDVETARCTAGT 83 (529)
T ss_dssp HHHHHHHHHTCS------CHHHHHHHHHHHHHHHTSH------HHHHHHHTCHHHHHHHHHHHHH--CCCHHHHHHHHHH
T ss_pred hHHHHHHHhCCC------CHHHHHHHHHHHHHHHcCC------ccHHHHHhCcchHHHHHHHHhc--CCCHHHHHHHHHH
Confidence 445556666543 3578888888887655431 1221 223344444432 2356677777777
Q ss_pred HHHHHHHhcc-----cCchHHHHHHHhhcccCCCchhHHHHHHHhhhhcccccccccccCCCHHHHHHHHHHHHhhhhHH
Q 002370 115 LSALILRAVE-----HGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMV 189 (930)
Q Consensus 115 La~l~~~~~~-----W~~~i~~li~~~~~~~~~~~~~~~~L~iL~~l~EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~~v 189 (930)
|..+...... =...++.++..+.+. ++......+..|..+...-. ..+..+.+ ..+
T Consensus 84 L~~ls~~~~~~~~i~~~g~i~~L~~lL~~~--~~~v~~~a~~~L~~l~~~~~-----------~~~~~i~~------~g~ 144 (529)
T 1jdh_A 84 LHNLSHHREGLLAIFKSGGIPALVKMLGSP--VDSVLFYAITTLHNLLLHQE-----------GAKMAVRL------AGG 144 (529)
T ss_dssp HHHHTTSHHHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHHHHCT-----------THHHHHHH------HTH
T ss_pred HHHHHcCchhHHHHHHcCCHHHHHHHHcCC--CHHHHHHHHHHHHHHhcCCc-----------chHHHHHH------cCC
Confidence 7776543210 125667777777652 23334455666666554311 11111111 123
Q ss_pred HHHHHHHHhhccCCCCCcchhhhHHHHHHHHHHHHHhccccccCcchhcccchHHHHHHhcCCC---CcHHHHHHHHHHH
Q 002370 190 VEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSLQVQ---SSFDVAIEVLVEL 266 (930)
Q Consensus 190 ~~~l~~~l~~~~~~~~~~~~~~~~~~~l~c~~sWi~~~~~~~~~~~~i~~~~ll~~l~~~L~~~---~~~~~a~~~l~ei 266 (930)
+..|...+.+ ++..++..+..|+..|..-. .-....+.....++.+.+.|.++ .....++.++..+
T Consensus 145 i~~L~~ll~~--------~~~~~~~~~~~~L~~la~~~---~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l 213 (529)
T 1jdh_A 145 LQKMVALLNK--------TNVKFLAITTDCLQILAYGN---QESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVL 213 (529)
T ss_dssp HHHHHHGGGC--------CCHHHHHHHHHHHHHHHTTC---HHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc--------CCHHHHHHHHHHHHHHHhCC---HHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence 3444444443 23467788888998887521 00011223445566666666543 2344566666555
Q ss_pred HhccCChhHHHHhhhhhhHHhhhchhhccCcHhHHhhHHHHHHHHHHhhhHHHHhcChhHHHHHHHHHhcccCCCCCchh
Q 002370 267 VGRHEGLPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMSEIGQAAPSLIVEASPEALALADALLSCVAFPSEDWEI 346 (930)
Q Consensus 267 ~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~d~d~~~~l~~l~~~~~e~~~~~l~~~~~~~~~ll~~ll~~~~~p~~d~~v 346 (930)
.. ..+....+... +..+.+. ..+.+.+.+..+..+..+..++..... .......++.++.+...+ +.++
T Consensus 214 ~~-~~~~~~~~~~~--g~~~~L~-~ll~~~~~~~~~~a~~~L~~l~~~~~~-----~~~~~~~i~~L~~ll~~~--~~~v 282 (529)
T 1jdh_A 214 SV-CSSNKPAIVEA--GGMQALG-LHLTDPSQRLVQNCLWTLRNLSDAATK-----QEGMEGLLGTLVQLLGSD--DINV 282 (529)
T ss_dssp TT-STTHHHHHHHT--THHHHHH-TTTTSSCHHHHHHHHHHHHHHHTTCTT-----CSCCHHHHHHHHHHTTCS--CHHH
T ss_pred hc-CcccHHHHHHC--CCHHHHH-HHHhCCChHHHHHHHHHHHHHhcCChh-----hHHHHhHHHHHHHHHcCC--CHHH
Confidence 43 22222222210 1111111 133455666666767666666543211 112245677777777664 5666
Q ss_pred hhhcHH
Q 002370 347 ADSTLQ 352 (930)
Q Consensus 347 ~~~~~~ 352 (930)
...+..
T Consensus 283 ~~~a~~ 288 (529)
T 1jdh_A 283 VTCAAG 288 (529)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655443
No 67
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=67.48 E-value=1e+02 Score=30.71 Aligned_cols=145 Identities=9% Similarity=-0.009 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHHHhcCchHHHHHHHHhhhcCCCCCCCchhhhHHHHHHHhhhhccccCCCccchhHHHHHHHH-hccCc
Q 002370 416 FRMNLVELLVDICQLLRSATFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAV-LSASR 494 (930)
Q Consensus 416 ~R~~~~d~l~~~~~~l~~~~~l~~~~~~~~~~~~~~~~W~~~Ea~L~~l~~iae~~~~~~~~~~l~~i~~~l~~-l~~~~ 494 (930)
.|......+.. +|.+..+..+...+ . +.++.....++++++.++.. .. .++.+++++.. +..++
T Consensus 39 vr~~A~~~L~~----~~~~~~~~~L~~~l-~----d~~~~vR~~A~~aL~~l~~~---~~---~~~~l~~~L~~~~~~d~ 103 (280)
T 1oyz_A 39 KRISSARVLQL----RGGQDAVRLAIEFC-S----DKNYIRRDIGAFILGQIKIC---KK---CEDNVFNILNNMALNDK 103 (280)
T ss_dssp HHHHHHHHHHH----HCCHHHHHHHHHHH-T----CSSHHHHHHHHHHHHHSCCC---TT---THHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHc----cCCchHHHHHHHHH-c----CCCHHHHHHHHHHHHHhccc---cc---cchHHHHHHHHHHhcCC
Confidence 45444444433 24444555554443 2 34577788888999887532 11 13555565542 33444
Q ss_pred hhhhhhHHHHHHHHHHHHHHhhHHHHHhchhchHHHHHHHHHhccccc--hhHHHHHHHHHHHHHhhcccCCCccHHHHH
Q 002370 495 SEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGISEAV--SSNACASALRKICEDASALIDEPSNLEILM 572 (930)
Q Consensus 495 ~~~~~~~~~v~~~t~~~~ig~y~~wl~~~p~~L~~vl~~l~~~l~~p~--v~~~Aa~al~~lc~~c~~~l~~p~~~~~l~ 572 (930)
... +|... ++.+|.+.. .+|.+-+.+++.+...+.+++ ++..|+.++.++.. +...+.|.
T Consensus 104 ~~~------vr~~a-~~aL~~l~~---~~~~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~--------~~~~~~L~ 165 (280)
T 1oyz_A 104 SAC------VRATA-IESTAQRCK---KNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVIND--------KATIPLLI 165 (280)
T ss_dssp CHH------HHHHH-HHHHHHHHH---HCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-----------CCHHHHH
T ss_pred CHH------HHHHH-HHHHHHHhc---cCCcccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC--------HHHHHHHH
Confidence 322 56544 588887753 345566778888888888754 89999999887543 22455554
Q ss_pred HHHHHHHhcCCChhhHHHHHHHHHHH
Q 002370 573 WIGEALEKRHLPLEDEEEVVGAISLI 598 (930)
Q Consensus 573 ~~~~~l~~~~l~~~~~~~l~eai~~v 598 (930)
.... .-+...|.....++|.+
T Consensus 166 ~~l~-----d~~~~vr~~a~~aL~~~ 186 (280)
T 1oyz_A 166 NLLK-----DPNGDVRNWAAFAININ 186 (280)
T ss_dssp HHHT-----CSSHHHHHHHHHHHHHH
T ss_pred HHHc-----CCCHHHHHHHHHHHHhh
Confidence 4322 22456788888888876
No 68
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=66.50 E-value=51 Score=41.47 Aligned_cols=64 Identities=3% Similarity=-0.106 Sum_probs=42.8
Q ss_pred CCCchHHHHHHHHHHHHhhhhHHHHh----hchhchHHHHHHHHHhhccCchhHHHHHHHHHHHHHhh
Q 002370 790 QEPDLVEAYTNFASTFVRTSRKEVLA----ASGALLEVSFQKAAICCTAMHRGAALAAMSYLSCFLEE 853 (930)
Q Consensus 790 ~~pD~~~~~f~l~~~~l~~~p~~~~~----s~~~~l~~~l~~~l~~l~~~e~~~~~a~~~fl~~li~~ 853 (930)
++.|.++.+-+++..+....-..+.. ...+.+..+++..+.....++..+...++.||..++..
T Consensus 314 ~d~e~~k~l~~ll~~lg~~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~ 381 (1204)
T 3a6p_A 314 KHYVFLKRLCQVLCALGNQLCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRH 381 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhc
Confidence 34666777777777776543332221 11245777888888778888888888889999977653
No 69
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=63.55 E-value=2.1e+02 Score=32.78 Aligned_cols=128 Identities=8% Similarity=0.020 Sum_probs=72.1
Q ss_pred cCCChHHHHHHHHHHHHhhcC-hHHHHHHHHhhccCCCCCCccchhHHhhhHHhHHHhccCcCCCChHHHHHHHHHHHHH
Q 002370 18 HDTESCNRVAANQWLVQFQQT-DAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKDALLNALLVA 96 (930)
Q Consensus 18 ~~~d~~~~~~A~~~L~~fq~s-~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~ki~~~~~~l~~e~~~~lr~~Ll~~ 96 (930)
.++|...|+-+--++..+-+. ++--..+...+..+=. +.++.+|-.|..+|-.-. .++..+.+-..+...
T Consensus 84 ~s~~~~~Krl~YL~l~~~~~~~~e~~~L~iN~l~kDl~--~~n~~ir~lALr~L~~i~-------~~e~~~~l~~~v~~~ 154 (621)
T 2vgl_A 84 SSNRYTEKQIGYLFISVLVNSNSELIRLINNAIKNDLA--SRNPTFMGLALHCIANVG-------SREMAEAFAGEIPKI 154 (621)
T ss_dssp GCSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHH--SCCHHHHHHHHHHHHHHC-------CHHHHHHHTTHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHhcC--CCCHHHHHHHHHHhhccC-------CHHHHHHHHHHHHHH
Confidence 456677777777777765444 5543343333332110 234567777777775432 234555555555555
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHhcc-cC--chHHHHHHHhhcccCCCchhHHHHHHHhhhh
Q 002370 97 AKRFSSGPPQLLTQICLALSALILRAVE-HG--KPIEKLFYSLQNLQSQDNGNMAVLEMLTVLP 157 (930)
Q Consensus 97 l~~~~~~~~~v~~kL~~~La~l~~~~~~-W~--~~i~~li~~~~~~~~~~~~~~~~L~iL~~l~ 157 (930)
+.+ ...+++||++-+.++..++...++ -+ ++++.+...+... ++......+..+..+.
T Consensus 155 l~~-~d~~~~VRK~A~~al~kl~~~~p~~~~~~~~~~~l~~lL~d~--d~~V~~~a~~~l~~i~ 215 (621)
T 2vgl_A 155 LVA-GDTMDSVKQSAALCLLRLYRTSPDLVPMGDWTSRVVHLLNDQ--HLGVVTAATSLITTLA 215 (621)
T ss_dssp HHC-SSSCHHHHHHHHHHHHHHHHHCGGGCCCCSCHHHHHHHTTCS--CHHHHHHHHHHHHHHH
T ss_pred HhC-CCCCHHHHHHHHHHHHHHHHhChhhcCchhHHHHHHHHhCCC--CccHHHHHHHHHHHHH
Confidence 521 245789999999999999986541 22 5666777766532 3323334444444443
No 70
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=57.73 E-value=2.6e+02 Score=32.00 Aligned_cols=260 Identities=14% Similarity=0.050 Sum_probs=133.0
Q ss_pred hHHHHHHHHhhccCCCCCCccchhHHhhhHHhHHHhccCcCCCChHHHH------HHHHHHHHHHHHhcCCCHHHHHHHH
Q 002370 39 DAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKD------ALLNALLVAAKRFSSGPPQLLTQIC 112 (930)
Q Consensus 39 ~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~ki~~~~~~l~~e~~~------~lr~~Ll~~l~~~~~~~~~v~~kL~ 112 (930)
..+......+|.++ +..+|..|+.+|.+-.... +.+. ..-..|+..+.. ..+..++...+
T Consensus 13 ~g~i~~Lv~lL~~~------~~~vr~~A~~~L~~La~~~------~~~~~i~~~~~~i~~Lv~~L~~--~~~~~~~~~A~ 78 (644)
T 2z6h_A 13 TRAIPELTKLLNDE------DQVVVNKAAVMVHQLSKKE------ASRHAIMRSPQMVSAIVRTMQN--TNDVETARCTA 78 (644)
T ss_dssp TTTHHHHHHHHTCS------CHHHHHHHHHHHHHHHTST------THHHHHTTCHHHHHHHHHHHHS--CCCHHHHHHHH
T ss_pred hchHHHHHHHHcCC------CHHHHHHHHHHHHHHHCCC------hhHHHHHhccChHHHHHHHHhc--CCCHHHHHHHH
Confidence 34566677777643 3588888988887766532 1111 223334444432 22566777777
Q ss_pred HHHHHHHHHhcc-----cCchHHHHHHHhhcccCCCchhHHHHHHHhhhhcccccccccccCCCHHHHHHHHHHHHhhhh
Q 002370 113 LALSALILRAVE-----HGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDSQASDCNISSAHRSQYGQELLSHTP 187 (930)
Q Consensus 113 ~~La~l~~~~~~-----W~~~i~~li~~~~~~~~~~~~~~~~L~iL~~l~EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~ 187 (930)
.+|..+...... =...++.++..+.+. ++......+..|..+...-. ..+.. +. ..
T Consensus 79 ~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~v~~~A~~aL~nL~~~~~-----------~~~~~----v~--~~ 139 (644)
T 2z6h_A 79 GTLHNLSHHREGLLAIFKSGGIPALVKMLGSP--VDSVLFYAITTLHNLLLHQE-----------GAKMA----VR--LA 139 (644)
T ss_dssp HHHHHHTTSHHHHHHHHTTTHHHHHHHHTTCS--SHHHHHHHHHHHHHHHHHST-----------THHHH----HH--HT
T ss_pred HHHHHHhcChhhHHHHHHcCCHHHHHHHHhCC--CHHHHHHHHHHHHHHHhCcc-----------hhHHH----HH--HC
Confidence 777765533210 124667777776652 23333445555555543211 01111 11 11
Q ss_pred HHHHHHHHHHhhccCCCCCcchhhhHHHHHHHHHHHHHhccccccCcchhcccchHHHHHHhcCCCC---cHHHHHHHHH
Q 002370 188 MVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSLQVQS---SFDVAIEVLV 264 (930)
Q Consensus 188 ~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~c~~sWi~~~~~~~~~~~~i~~~~ll~~l~~~L~~~~---~~~~a~~~l~ 264 (930)
.++..|...+.+. +..+...++.|+..|..-. .-....+.....++.+.+.|.++. ....++.+|.
T Consensus 140 g~i~~Lv~lL~~~--------~~~~~~~a~~~L~~La~~~---~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~ 208 (644)
T 2z6h_A 140 GGLQKMVALLNKT--------NVKFLAITTDCLQILAYGN---QESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLK 208 (644)
T ss_dssp THHHHHHHGGGCC--------CHHHHHHHHHHHHHHHTTC---HHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred CChHHHHHHHCcC--------CHHHHHHHHHHHHHHHhcC---cHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHH
Confidence 2344454554442 3457777888998887521 001112344567778888887653 3455666666
Q ss_pred HHHhccCChhHHHHhhhhhhHHhhhchhhccCcHhHHhhHHHHHHHHHHhhhHHHHhcChhHHHHHHHHHhcccCCCCCc
Q 002370 265 ELVGRHEGLPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMSEIGQAAPSLIVEASPEALALADALLSCVAFPSEDW 344 (930)
Q Consensus 265 ei~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~d~d~~~~l~~l~~~~~e~~~~~l~~~~~~~~~ll~~ll~~~~~p~~d~ 344 (930)
.+.. ..+....++.. +..+.+. ..+.+.+.+..+..+..+..++..... .......++.|+.+...+ +.
T Consensus 209 nLs~-~~~~~~~l~~~--g~l~~L~-~ll~~~~~~~~~~a~~~L~nL~~~~~~-----~~~~~~~i~~Lv~lL~~~--d~ 277 (644)
T 2z6h_A 209 VLSV-CSSNKPAIVEA--GGMQALG-LHLTDPSQRLVQNCLWTLRNLSDAATK-----QEGMEGLLGTLVQLLGSD--DI 277 (644)
T ss_dssp HHTT-CTTHHHHHHHT--THHHHHH-TTTTCSCHHHHHHHHHHHHHHGGGCTT-----CCSCHHHHHHHHHHTTCS--CH
T ss_pred HHhc-CcccHHHHHHC--CCHHHHH-HHHhcCCHHHHHHHHHHHHHHhhcchh-----hhhhhhHHHHHHHHHcCC--CH
Confidence 5553 22222222211 0111111 133455667777777777776543211 112246777777777764 56
Q ss_pred hhhhhcHHH
Q 002370 345 EIADSTLQF 353 (930)
Q Consensus 345 ~v~~~~~~f 353 (930)
++.+.+...
T Consensus 278 ~v~~~a~~a 286 (644)
T 2z6h_A 278 NVVTCAAGI 286 (644)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 665554433
No 71
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=48.81 E-value=3.9e+02 Score=31.43 Aligned_cols=248 Identities=13% Similarity=0.037 Sum_probs=135.3
Q ss_pred ccCCChHHHHHHHHHHHHhhc----------ChHHHHHHHHhhccCCCCCCccchhHHhhhHHhHHHhccCcCCCChHHH
Q 002370 17 NHDTESCNRVAANQWLVQFQQ----------TDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAK 86 (930)
Q Consensus 17 y~~~d~~~~~~A~~~L~~fq~----------s~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~ki~~~~~~l~~e~~ 86 (930)
....|+..|..|-..|..+-. .+.+......+|.... +.++|..|+.+|++ +..+ .+.+
T Consensus 159 L~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~~~-----d~~vr~~Aa~aL~~-Ls~~-----~~~~ 227 (780)
T 2z6g_A 159 LNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTN-----DVETARCTSGTLHN-LSHH-----REGL 227 (780)
T ss_dssp HHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHH-HHTS-----HHHH
T ss_pred HCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHcCCC-----CHHHHHHHHHHHHH-HhCC-----chhH
Confidence 346788889999898888765 4566777777776532 46999999999998 5432 1222
Q ss_pred HHH-HHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHhcc------cCchHHHHHHHhhcccCCCchhHHHHHHHhhhhc
Q 002370 87 DAL-LNALLVAAKRFS-SGPPQLLTQICLALSALILRAVE------HGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPE 158 (930)
Q Consensus 87 ~~l-r~~Ll~~l~~~~-~~~~~v~~kL~~~La~l~~~~~~------W~~~i~~li~~~~~~~~~~~~~~~~L~iL~~l~E 158 (930)
..+ +...+..|.... .++..++...+.+|..++..... =...++.++..+... +.......+..|..+.-
T Consensus 228 ~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~--~~~v~~~a~~aL~~La~ 305 (780)
T 2z6g_A 228 LAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT--NVKFLAITTDCLQILAY 305 (780)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCC--CHHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcC--CHHHHHHHHHHHHHHhc
Confidence 222 223444444433 34577888888888888765321 135667777777652 22223444455554442
Q ss_pred ccccccccccCCCHHHHHHHHHHHHhhhhHHHHHHHHHHhhccCCCCCcchhhhHHHHHHHHHHHHHhccccccCcchhc
Q 002370 159 EVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLA 238 (930)
Q Consensus 159 E~~~~~~~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~c~~sWi~~~~~~~~~~~~i~ 238 (930)
. ....|..+ ... ..+..|...+... ........+..++....... . ....+.
T Consensus 306 ~-----------~~e~~~~i----~~~--~~i~~Lv~lL~~~-------~~~~~~~~a~~aL~~Ls~~~---~-~~~~i~ 357 (780)
T 2z6g_A 306 G-----------NQESKLII----LAS--GGPQALVNIMRTY-------TYEKLLWTTSRVLKVLSVCS---S-NKPAIV 357 (780)
T ss_dssp T-----------CHHHHHHH----HTT--THHHHHHHHHTTC-------CCHHHHHHHHHHHHHHHTST---T-HHHHHH
T ss_pred C-----------ChHHHHHH----HHc--CCHHHHHHHHhcC-------CHHHHHHHHHHHHHHhhcCh---H-HHHHHH
Confidence 1 11111111 111 1233333333332 12234444555555443311 1 112244
Q ss_pred ccchHHHHHHhcCCC--CcHHHHHHHHHHHHhccCC--hhHHHHhhhhhhHHhhhchhhccCcHhHHhhHHHHHHHHHH
Q 002370 239 AHPLLNFVFNSLQVQ--SSFDVAIEVLVELVGRHEG--LPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMSEIGQ 313 (930)
Q Consensus 239 ~~~ll~~l~~~L~~~--~~~~~a~~~l~ei~~~~~~--~~~~l~~~~~~l~~~~~~~~~~~~d~d~~~~l~~l~~~~~e 313 (930)
....++.+...+.++ ++...|+.++..+...... ....+++.+.. .+..+|.+.....+..+..++.
T Consensus 358 ~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~--------lL~~~d~~vr~~A~~aL~~L~~ 428 (780)
T 2z6g_A 358 EAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQ--------LLGSDDINVVTCAAGILSNLTC 428 (780)
T ss_dssp HTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHH--------HTTCSCHHHHHHHHHHHHHHTS
T ss_pred HhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHH--------HHcCCCHHHHHHHHHHHHHHHh
Confidence 556788888888754 4566778888877765432 12333443332 2334566666666666666644
No 72
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=43.49 E-value=1.4e+02 Score=28.19 Aligned_cols=115 Identities=20% Similarity=0.104 Sum_probs=75.0
Q ss_pred HhccCCChHHHHHHHHHHHHhhcChHHHHHHHHhhccCCCCCCccchhHHhhhHHhHHHhccCcCCCChHHHHHHHHHHH
Q 002370 15 VLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKDALLNALL 94 (930)
Q Consensus 15 ~ly~~~d~~~~~~A~~~L~~fq~s~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~ki~~~~~~l~~e~~~~lr~~Ll 94 (930)
.+..++|+..|..|-..|.++. .+++......+|.++ +..+|..|+..|..- .. ++.. ..|+
T Consensus 57 ~~l~~~~~~vr~~a~~aL~~~~-~~~~~~~L~~~l~~~------~~~vr~~a~~aL~~~-~~------~~~~----~~L~ 118 (211)
T 3ltm_A 57 KALKDEDAWVRRAAADALGQIG-DERAVEPLIKALKDE------DGWVRQSAAVALGQI-GD------ERAV----EPLI 118 (211)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHC-CGGGHHHHHHHTTCS------SHHHHHHHHHHHHHH-CC------GGGH----HHHH
T ss_pred HHHcCCCHHHHHHHHHHHHhhC-CHHHHHHHHHHHcCC------CHHHHHHHHHHHHHh-Cc------HHHH----HHHH
Confidence 3334678899999999999987 477888888888654 368999999999643 21 1222 2333
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHhcccCchHHHHHHHhhcccCCCchhHHHHHHHhhhh
Q 002370 95 VAAKRFSSGPPQLLTQICLALSALILRAVEHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLP 157 (930)
Q Consensus 95 ~~l~~~~~~~~~v~~kL~~~La~l~~~~~~W~~~i~~li~~~~~~~~~~~~~~~~L~iL~~l~ 157 (930)
..+ ...+..|+...+.+|+.+. .+..++.++..+... ++.......+.|..+.
T Consensus 119 ~~l---~d~~~~vr~~a~~aL~~~~-----~~~~~~~L~~~l~d~--~~~vr~~a~~aL~~~~ 171 (211)
T 3ltm_A 119 KAL---KDEDWFVRIAAAFALGEIG-----DERAVEPLIKALKDE--DGWVRQSAADALGEIG 171 (211)
T ss_dssp HHT---TCSSHHHHHHHHHHHHHHC-----CGGGHHHHHHHTTCS--SHHHHHHHHHHHHHHC
T ss_pred HHH---hCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHcCC--CHHHHHHHHHHHHHhC
Confidence 332 2456778888888887762 356777787777542 2333445555555553
No 73
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=43.23 E-value=2.1e+02 Score=26.61 Aligned_cols=176 Identities=19% Similarity=0.092 Sum_probs=97.8
Q ss_pred HHHHHHHHhccCCChHHHHHHHHHHHHhhcChHHHHHHHHhhccCCCCCCccchhHHhhhHHhHHHhccCcCCCChHHHH
Q 002370 8 KVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKD 87 (930)
Q Consensus 8 ~v~~av~~ly~~~d~~~~~~A~~~L~~fq~s~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~ki~~~~~~l~~e~~~ 87 (930)
.....|+.| .++|+..|..|-..|.++.. +.+......+|.++ +..+|..|+..|...- +++...
T Consensus 15 ~~~~~i~~L-~~~~~~vr~~A~~~L~~~~~-~~~~~~L~~~l~~~------~~~vr~~a~~~L~~~~-------~~~~~~ 79 (201)
T 3ltj_A 15 KVEMYIKNL-QDDSYYVRRAAAYALGKIGD-ERAVEPLIKALKDE------DAWVRRAAADALGQIG-------DERAVE 79 (201)
T ss_dssp HHHHHHHHT-TCSCHHHHHHHHHHHHHHCC-GGGHHHHHHHTTCS------SHHHHHHHHHHHHHHC-------CGGGHH
T ss_pred chHHHHHHh-cCCCHHHHHHHHHHHHhcCC-hhHHHHHHHHHcCC------CHHHHHHHHHHHHhhC-------CHHHHH
Confidence 344555555 47889999999999998875 56667777888643 3689999999886532 112222
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcccCchHHHHHHHhhcccCCCchhHHHHHHHhhhhcc-cccc--c
Q 002370 88 ALLNALLVAAKRFSSGPPQLLTQICLALSALILRAVEHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEE-VIDS--Q 164 (930)
Q Consensus 88 ~lr~~Ll~~l~~~~~~~~~v~~kL~~~La~l~~~~~~W~~~i~~li~~~~~~~~~~~~~~~~L~iL~~l~EE-~~~~--~ 164 (930)
. |+..+. ..+..|+...+.+|+.+. -+..++.++..+... ++.........|..+..+ .... +
T Consensus 80 ~----L~~~l~---d~~~~vr~~a~~aL~~~~-----~~~~~~~L~~~l~d~--~~~vr~~a~~aL~~~~~~~~~~~L~~ 145 (201)
T 3ltj_A 80 P----LIKALK---DEDGWVRQSAAVALGQIG-----DERAVEPLIKALKDE--DWFVRIAAAFALGEIGDERAVEPLIK 145 (201)
T ss_dssp H----HHHHTT---CSSHHHHHHHHHHHHHHC-----CGGGHHHHHHHTTCS--SHHHHHHHHHHHHHHTCGGGHHHHHH
T ss_pred H----HHHHHc---CCCHHHHHHHHHHHHHhC-----cHHHHHHHHHHHcCC--CHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 2 233222 345678877777776642 245667777766542 222333444444444321 0000 0
Q ss_pred ccccCCCHHHHHHHHHHHHh-hhhHHHHHHHHHHhhccCCCCCcchhhhHHHHHHHHH
Q 002370 165 ASDCNISSAHRSQYGQELLS-HTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLL 221 (930)
Q Consensus 165 ~~~~~l~~~~r~~~~~~l~~-~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~c~~ 221 (930)
.+.. -....|......+.. ..+.++..|...+.. ++..++..+.+++.
T Consensus 146 ~l~d-~~~~vr~~A~~aL~~~~~~~~~~~L~~~l~d--------~~~~vr~~A~~aL~ 194 (201)
T 3ltj_A 146 ALKD-EDGWVRQSAADALGEIGGERVRAAMEKLAET--------GTGFARKVAVNYLE 194 (201)
T ss_dssp HTTC-SSHHHHHHHHHHHHHHCSHHHHHHHHHHHHH--------CCHHHHHHHHHHHH
T ss_pred HHcC-CCHHHHHHHHHHHHHhCchhHHHHHHHHHhC--------CCHHHHHHHHHHHH
Confidence 0000 122344455555544 345666666666654 23456766666654
No 74
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=41.57 E-value=4.4e+02 Score=29.97 Aligned_cols=217 Identities=15% Similarity=0.098 Sum_probs=119.5
Q ss_pred HHHHHHHhccCCChHHHHHHHHHHHHhhcChH---------HHHHHHHhhccCCCCCCccchhHHhhhHHhHHHhccCcC
Q 002370 9 VAQAVHVLNHDTESCNRVAANQWLVQFQQTDA---------AWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGY 79 (930)
Q Consensus 9 v~~av~~ly~~~d~~~~~~A~~~L~~fq~s~~---------aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~ki~~~~~ 79 (930)
+...+..|.++.+++.|..|-..|..+-+.++ +......+|.++ +..+|..|+.+|.+-....
T Consensus 58 i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~------~~~v~~~A~~aL~nL~~~~-- 129 (644)
T 2z6h_A 58 VSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSP------VDSVLFYAITTLHNLLLHQ-- 129 (644)
T ss_dssp HHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHHHHTTTHHHHHHHHTTCS------SHHHHHHHHHHHHHHHHHS--
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHHcCCHHHHHHHHhCC------CHHHHHHHHHHHHHHHhCc--
Confidence 44455555555578888888888888776655 344555666543 4699999999998877652
Q ss_pred CCChHHHHHH-HHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHhcc------cCchHHHHHHHhhcccCCCchhHHHHH
Q 002370 80 YLQSAAKDAL-LNALLVAAKRFS-SGPPQLLTQICLALSALILRAVE------HGKPIEKLFYSLQNLQSQDNGNMAVLE 151 (930)
Q Consensus 80 ~l~~e~~~~l-r~~Ll~~l~~~~-~~~~~v~~kL~~~La~l~~~~~~------W~~~i~~li~~~~~~~~~~~~~~~~L~ 151 (930)
++.+..+ +...+..|...- .++..++...+.+|..++..... =...++.++..+.... ........+.
T Consensus 130 ---~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~-~~~~~~~a~~ 205 (644)
T 2z6h_A 130 ---EGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT-YEKLLWTTSR 205 (644)
T ss_dssp ---TTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCC-CHHHHHHHHH
T ss_pred ---chhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCC-hHHHHHHHHH
Confidence 2333333 234555554432 34445555556677777653210 1245667777766421 1122344556
Q ss_pred HHhhhhcccccccccccCCCHHHHHHHHHHHHhhhhHHHHHHHHHHhhccCCCCCcchhhhHHHHHHHHHHHHHhccccc
Q 002370 152 MLTVLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTE 231 (930)
Q Consensus 152 iL~~l~EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~c~~sWi~~~~~~~ 231 (930)
+|..+... . .-|.. +.+. .++..+...+.. .+..++..++.++..-.+..
T Consensus 206 ~L~nLs~~-----------~-~~~~~----l~~~--g~l~~L~~ll~~--------~~~~~~~~a~~~L~nL~~~~---- 255 (644)
T 2z6h_A 206 VLKVLSVC-----------S-SNKPA----IVEA--GGMQALGLHLTD--------PSQRLVQNCLWTLRNLSDAA---- 255 (644)
T ss_dssp HHHHHTTC-----------T-THHHH----HHHT--THHHHHHTTTTC--------SCHHHHHHHHHHHHHHGGGC----
T ss_pred HHHHHhcC-----------c-ccHHH----HHHC--CCHHHHHHHHhc--------CCHHHHHHHHHHHHHHhhcc----
Confidence 66655521 0 11111 2211 133444433333 23467778888887765532
Q ss_pred cCcchhcccchHHHHHHhcCCC--CcHHHHHHHHHHHHhc
Q 002370 232 ISQGSLAAHPLLNFVFNSLQVQ--SSFDVAIEVLVELVGR 269 (930)
Q Consensus 232 ~~~~~i~~~~ll~~l~~~L~~~--~~~~~a~~~l~ei~~~ 269 (930)
+ ........++.+...|.++ +++..|+.+|..+...
T Consensus 256 -~-~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~ 293 (644)
T 2z6h_A 256 -T-KQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN 293 (644)
T ss_dssp -T-TCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT
T ss_pred -h-hhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 1 1112335777777777643 5566677777666543
No 75
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=41.48 E-value=2e+02 Score=26.79 Aligned_cols=111 Identities=21% Similarity=0.116 Sum_probs=72.9
Q ss_pred cCCChHHHHHHHHHHHHhhcChHHHHHHHHhhccCCCCCCccchhHHhhhHHhHHHhccCcCCCChHHHHHHHHHHHHHH
Q 002370 18 HDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKDALLNALLVAA 97 (930)
Q Consensus 18 ~~~d~~~~~~A~~~L~~fq~s~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~ki~~~~~~l~~e~~~~lr~~Ll~~l 97 (930)
.++|+..|..|-..|.++. .+++......+|.++ +..+|..|+..|...-. ++.. ..|+..+
T Consensus 55 ~~~~~~vr~~a~~~L~~~~-~~~~~~~L~~~l~d~------~~~vr~~a~~aL~~~~~-------~~~~----~~L~~~l 116 (201)
T 3ltj_A 55 KDEDAWVRRAAADALGQIG-DERAVEPLIKALKDE------DGWVRQSAAVALGQIGD-------ERAV----EPLIKAL 116 (201)
T ss_dssp TCSSHHHHHHHHHHHHHHC-CGGGHHHHHHHTTCS------SHHHHHHHHHHHHHHCC-------GGGH----HHHHHHT
T ss_pred cCCCHHHHHHHHHHHHhhC-CHHHHHHHHHHHcCC------CHHHHHHHHHHHHHhCc-------HHHH----HHHHHHH
Confidence 4678889999999999886 467778888888754 36899999999965321 1222 2233333
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHHHhcccCchHHHHHHHhhcccCCCchhHHHHHHHhhh
Q 002370 98 KRFSSGPPQLLTQICLALSALILRAVEHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVL 156 (930)
Q Consensus 98 ~~~~~~~~~v~~kL~~~La~l~~~~~~W~~~i~~li~~~~~~~~~~~~~~~~L~iL~~l 156 (930)
...+..|+...+.+|+.+. .+..++.++..+... ++.......+.|..+
T Consensus 117 ---~d~~~~vr~~a~~aL~~~~-----~~~~~~~L~~~l~d~--~~~vr~~A~~aL~~~ 165 (201)
T 3ltj_A 117 ---KDEDWFVRIAAAFALGEIG-----DERAVEPLIKALKDE--DGWVRQSAADALGEI 165 (201)
T ss_dssp ---TCSSHHHHHHHHHHHHHHT-----CGGGHHHHHHHTTCS--SHHHHHHHHHHHHHH
T ss_pred ---cCCCHHHHHHHHHHHHHhC-----CHHHHHHHHHHHcCC--CHHHHHHHHHHHHHh
Confidence 2456788888888887763 346677777777642 233334455555544
No 76
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=39.39 E-value=46 Score=29.03 Aligned_cols=75 Identities=7% Similarity=0.088 Sum_probs=44.2
Q ss_pred CCchhhhHHHHHHHhhhhccccCCCccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHhchhchHHHH
Q 002370 452 IPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLL 531 (930)
Q Consensus 452 ~~W~~~Ea~L~~l~~iae~~~~~~~~~~l~~i~~~l~~l~~~~~~~~~~~~~v~~~t~~~~ig~y~~wl~~~p~~L~~vl 531 (930)
.+|.-...++++++.+++. . .++.+...+ .++... ||..+ .+.+|++. .+ .++
T Consensus 54 ~~~~vR~~A~~aL~~~~~~-----~--a~~~L~~~L----~d~~~~------VR~~A-~~aL~~~~-----~~----~a~ 106 (131)
T 1te4_A 54 EDWRIRGAAAWIIGNFQDE-----R--AVEPLIKLL----EDDSGF------VRSGA-ARSLEQIG-----GE----RVR 106 (131)
T ss_dssp SCHHHHHHHHHHHGGGCSH-----H--HHHHHHHHH----HHCCTH------HHHHH-HHHHHHHC-----SH----HHH
T ss_pred CCHHHHHHHHHHHHhcCCH-----H--HHHHHHHHH----cCCCHH------HHHHH-HHHHHHhC-----cH----HHH
Confidence 4688888888988887531 0 123333333 233222 56645 48888765 23 355
Q ss_pred HHHHHhccc--cchhHHHHHHHHH
Q 002370 532 LFLAAGISE--AVSSNACASALRK 553 (930)
Q Consensus 532 ~~l~~~l~~--p~v~~~Aa~al~~ 553 (930)
+.|...+.+ +.|+..|+.+|.+
T Consensus 107 ~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 107 AAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp HHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHh
Confidence 556666664 4588888888754
No 77
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=31.79 E-value=5.2e+02 Score=27.94 Aligned_cols=48 Identities=19% Similarity=0.289 Sum_probs=28.6
Q ss_pred HHHHHHHHHhhhhHHHHhhchhchHHHHHHHHHhhccCchhHHHHHHHHHH
Q 002370 798 YTNFASTFVRTSRKEVLAASGALLEVSFQKAAICCTAMHRGAALAAMSYLS 848 (930)
Q Consensus 798 ~f~l~~~~l~~~p~~~~~s~~~~l~~~l~~~l~~l~~~e~~~~~a~~~fl~ 848 (930)
|++.+..++...+..-+. .....+|...-.|+..+|.-++..|+.||.
T Consensus 304 FL~eleeile~~~~~ef~---~i~~~lF~~la~ci~S~hfqVAErAL~~w~ 351 (449)
T 2npp_B 304 FLNELEEILDVIEPSEFV---KIMEPLFRQLAKCVSSPHFQVAERALYYWN 351 (449)
T ss_dssp HHHHHHHHHTTCCHHHHH---HHHHHHHHHHHHHHTCSCHHHHHHHHGGGG
T ss_pred HHHHHHHHHHhCCHHHHH---HHHHHHHHHHHHHHcCCCHHHHHHHHHHHC
Confidence 444455555443322222 234456777777788888888888887774
No 78
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=30.02 E-value=5.3e+02 Score=27.44 Aligned_cols=48 Identities=19% Similarity=0.289 Sum_probs=29.0
Q ss_pred HHHHHHHHHhhhhHHHHhhchhchHHHHHHHHHhhccCchhHHHHHHHHHH
Q 002370 798 YTNFASTFVRTSRKEVLAASGALLEVSFQKAAICCTAMHRGAALAAMSYLS 848 (930)
Q Consensus 798 ~f~l~~~~l~~~p~~~~~s~~~~l~~~l~~~l~~l~~~e~~~~~a~~~fl~ 848 (930)
|++.+..++...+..-+. .....+|.....|+..+|--++..|+.||.
T Consensus 271 FL~Ele~iLe~~~~~~f~---~i~~~lf~~la~ci~S~hfqVAErAL~~wn 318 (403)
T 3fga_B 271 FLNELEEILDVIEPSEFV---KIMEPLFRQLAKCVSSPHFQVAERALYYWN 318 (403)
T ss_dssp HHHHHHHHHTTCCHHHHH---HHHHHHHHHHHHHHTCSCHHHHHHHHGGGG
T ss_pred HHHHHHHHHHhCCHHHHH---HHHHHHHHHHHHHHCCCCHHHHHHHHHHhc
Confidence 445555555543322222 234556777777888888888888887773
No 79
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=28.99 E-value=3.1e+02 Score=27.27 Aligned_cols=66 Identities=11% Similarity=0.069 Sum_probs=48.0
Q ss_pred CCCCchHHHHHHHHHHHHhhhhHHHHhhchhchHHHHHHHHHhhccCchhHHHHHHHHHHHHHhhhh
Q 002370 789 DQEPDLVEAYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICCTAMHRGAALAAMSYLSCFLEECL 855 (930)
Q Consensus 789 ~~~pD~~~~~f~l~~~~l~~~p~~~~~s~~~~l~~~l~~~l~~l~~~e~~~~~a~~~fl~~li~~~~ 855 (930)
..+|-++.+.+.++.++++.+....++. .+.+..++..+..++...++.+-.+|..++..+..+.+
T Consensus 150 ~Knpkv~~~~l~~l~~~l~~fg~~~~~~-k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G 215 (278)
T 4ffb_C 150 KKLPKLIAAAANCVYELMAAFGLTNVNV-QTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTG 215 (278)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHTTTTCCH-HHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC--
T ss_pred ccCHHHHHHHHHHHHHHHHHhCCCcCCc-hhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhC
Confidence 4679999999999999999865433322 13455566666677788889999999999888876644
No 80
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=28.12 E-value=4.4e+02 Score=25.88 Aligned_cols=194 Identities=13% Similarity=0.039 Sum_probs=109.2
Q ss_pred HHHHhhcChHHHHHHHHhhccCCCCCCccchhHHhhhHHhHHHhccCcCCCChHHHHHHHHHHHHHHHHhc-CCCHHHHH
Q 002370 31 WLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKDALLNALLVAAKRFS-SGPPQLLT 109 (930)
Q Consensus 31 ~L~~fq~s~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~ki~~~~~~l~~e~~~~lr~~Ll~~l~~~~-~~~~~v~~ 109 (930)
...-.|.+++...+..+||... |..++.=|.++|..-++. .|.......-+.++.-+.... +.+.-|.-
T Consensus 24 a~ela~~~e~~l~~L~~LL~dk------D~~vk~raL~~LeellK~----~~~~l~~~~~e~~Ld~iI~llk~~dEkval 93 (265)
T 3b2a_A 24 AVSLALEDKRALFLILELAGED------DETTRLRAFVALGEILKR----ADSDLRMMVLERHLDVFINALSQENEKVTI 93 (265)
T ss_dssp HHHHHHHCHHHHHHHHHHTTSS------CHHHHHHHHHHHHHHHHH----SCHHHHHHHHHHHHHHHHHTCCSTTHHHHH
T ss_pred HHHHHHhchhHHHHHHHHHhcc------chHHHHHHHHHHHHHHHh----ccccccHHHHHHHHHHHHHHHhccchhHHH
Confidence 3445677888999999999653 469999999999999986 333344444444444444322 33444544
Q ss_pred HHHHHHHHHHHHhcccCchHHHHHHHhhcccCCCchhHHHHHHHhhhhcccccccccccCCCHHHHHHHHHHHHhhhhHH
Q 002370 110 QICLALSALILRAVEHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMV 189 (930)
Q Consensus 110 kL~~~La~l~~~~~~W~~~i~~li~~~~~~~~~~~~~~~~L~iL~~l~EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~~v 189 (930)
+-.-+|-.+.-..+--++.+.-+...+.+....++ +.+.+ ..+|.++.. ++ ..-.+.|
T Consensus 94 ~A~r~L~~LLe~vpL~~~~y~Kl~~aL~dlik~~~--~il~~---eaae~Lgkl-kv----------------~~~~~~V 151 (265)
T 3b2a_A 94 KALRALGYLVKDVPMGSKTFLKAAKTLVSLLESPD--DMMRI---ETIDVLSKL-QP----------------LEDSKLV 151 (265)
T ss_dssp HHHHHHHHHHTTCCBCHHHHHHHHHHHHHHTTSCC--HHHHH---HHHHHHHHC-CB----------------SCCCHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhcCCC--chHHH---HHHHHhCcC-Cc----------------ccchHHH
Confidence 55556666665544334555555555443211111 12111 223333311 11 1125678
Q ss_pred HHHHHHHHhhccCCCCCcchhhhHHHHHHHHHHHHHhccccccCcchhcccchHHHHHHhcC--CCCcHHHHHHHHHHHH
Q 002370 190 VEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSLQ--VQSSFDVAIEVLVELV 267 (930)
Q Consensus 190 ~~~l~~~l~~~~~~~~~~~~~~~~~~~l~c~~sWi~~~~~~~~~~~~i~~~~ll~~l~~~L~--~~~~~~~a~~~l~ei~ 267 (930)
.+++.+.+.+ .+..++..+++.+.+--.+. + +.+. ..+++.-+=..|. |+.+++.|.+.+-+++
T Consensus 152 ~~~l~sLl~S--------kd~~vK~agl~~L~eia~~S---~-D~~i--~~~I~~eI~elL~~eD~~l~e~aLd~Le~il 217 (265)
T 3b2a_A 152 RTYINELVVS--------PDLYTKVAGFCLFLNMLNSS---A-DSGH--LTLILDEIPSLLQNDNEFIVELALDVLEKAL 217 (265)
T ss_dssp HHHHHHHHTC--------SSHHHHHHHHHHHHHHGGGC---S-SCCC--GGGTTTTHHHHHTCSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhC--------CChhHHHHHHHHHHHhhccc---C-CHHH--HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 8888888743 35678888888887766643 1 1121 1112221222223 6678899999999999
Q ss_pred hcc
Q 002370 268 GRH 270 (930)
Q Consensus 268 ~~~ 270 (930)
+.+
T Consensus 218 s~p 220 (265)
T 3b2a_A 218 SFP 220 (265)
T ss_dssp TSC
T ss_pred cCc
Confidence 865
No 81
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=26.59 E-value=6.4e+02 Score=27.32 Aligned_cols=252 Identities=13% Similarity=0.040 Sum_probs=134.0
Q ss_pred HHHhccCCChHHHHHHHHHHHHhhcC----------hHHHHHHHHhhccCCCCCCccchhHHhhhHHhHHHhccCcCCCC
Q 002370 13 VHVLNHDTESCNRVAANQWLVQFQQT----------DAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQ 82 (930)
Q Consensus 13 v~~ly~~~d~~~~~~A~~~L~~fq~s----------~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~ki~~~~~~l~ 82 (930)
+..+..++|+..|..|-..|..+-.. +.+......+|... .+.+++..|+.+|++-.. +
T Consensus 22 Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~-----~~~~~~~~a~~~L~~ls~-~----- 90 (529)
T 1jdh_A 22 LTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNT-----NDVETARCTAGTLHNLSH-H----- 90 (529)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHTT-S-----
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcC-----CCHHHHHHHHHHHHHHHc-C-----
Confidence 33444577888999999999877553 34556666677543 246899999999987332 1
Q ss_pred hHHHHHHHH-HHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHhcc------cCchHHHHHHHhhcccCCCchhHHHHHHHh
Q 002370 83 SAAKDALLN-ALLVAAKRFS-SGPPQLLTQICLALSALILRAVE------HGKPIEKLFYSLQNLQSQDNGNMAVLEMLT 154 (930)
Q Consensus 83 ~e~~~~lr~-~Ll~~l~~~~-~~~~~v~~kL~~~La~l~~~~~~------W~~~i~~li~~~~~~~~~~~~~~~~L~iL~ 154 (930)
.+.+..+.+ ..+..+...- .++..++...+.+|..++..... -...++.++..+... +..........|.
T Consensus 91 ~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~--~~~~~~~~~~~L~ 168 (529)
T 1jdh_A 91 REGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT--NVKFLAITTDCLQ 168 (529)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCC--CHHHHHHHHHHHH
T ss_pred chhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcC--CHHHHHHHHHHHH
Confidence 233333332 2344444332 34567888888888888765321 135667777777642 2222334444554
Q ss_pred hhhcccccccccccCCCHHHHHHHHHHHHhhhhHHHHHHHHHHhhccCCCCCcchhhhHHHHHHHHHHHHHhccccccCc
Q 002370 155 VLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQ 234 (930)
Q Consensus 155 ~l~EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~c~~sWi~~~~~~~~~~ 234 (930)
.+... .+..+..+.+. ...+.++.++ .... .......+.+++..-.... . ..
T Consensus 169 ~la~~-----------~~~~~~~i~~~--~~i~~L~~ll----~~~~-------~~~~~~~a~~~L~~l~~~~---~-~~ 220 (529)
T 1jdh_A 169 ILAYG-----------NQESKLIILAS--GGPQALVNIM----RTYT-------YEKLLWTTSRVLKVLSVCS---S-NK 220 (529)
T ss_dssp HHHTT-----------CHHHHHHHHHT--THHHHHHHHH----HHCC-------CHHHHHHHHHHHHHHTTST---T-HH
T ss_pred HHHhC-----------CHHHHHHHHHC--CCHHHHHHHH----HhCC-------hHHHHHHHHHHHHHHhcCc---c-cH
Confidence 44321 11111111110 1233334433 3321 2234455555554443211 1 11
Q ss_pred chhcccchHHHHHHhcCCC--CcHHHHHHHHHHHHhccCC--hhHHHHhhhhhhHHhhhchhhccCcHhHHhhHHHHHHH
Q 002370 235 GSLAAHPLLNFVFNSLQVQ--SSFDVAIEVLVELVGRHEG--LPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMSE 310 (930)
Q Consensus 235 ~~i~~~~ll~~l~~~L~~~--~~~~~a~~~l~ei~~~~~~--~~~~l~~~~~~l~~~~~~~~~~~~d~d~~~~l~~l~~~ 310 (930)
..+.....++.+...+.++ ++...++.++..+...... .....+|.+.. .+.++|.+.....+..+..
T Consensus 221 ~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~--------ll~~~~~~v~~~a~~~L~~ 292 (529)
T 1jdh_A 221 PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQ--------LLGSDDINVVTCAAGILSN 292 (529)
T ss_dssp HHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHH--------HTTCSCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHH--------HHcCCCHHHHHHHHHHHHH
Confidence 2234556788888888754 4566777787777654322 12233333322 2345566666666666666
Q ss_pred HHH
Q 002370 311 IGQ 313 (930)
Q Consensus 311 ~~e 313 (930)
++.
T Consensus 293 L~~ 295 (529)
T 1jdh_A 293 LTC 295 (529)
T ss_dssp HTT
T ss_pred Hhc
Confidence 644
No 82
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=22.55 E-value=5e+02 Score=25.58 Aligned_cols=169 Identities=9% Similarity=0.043 Sum_probs=80.9
Q ss_pred hhhhHHHHHHHHHHHHHhccccccCcch--hcccchHHHHHH-hcCCC--CcHHHHHHHHHHHHhccCChhHHHHhhhhh
Q 002370 209 LHDRNRKILRCLLSWVRAGCFTEISQGS--LAAHPLLNFVFN-SLQVQ--SSFDVAIEVLVELVGRHEGLPQALLCRVPF 283 (930)
Q Consensus 209 ~~~~~~~~l~c~~sWi~~~~~~~~~~~~--i~~~~ll~~l~~-~L~~~--~~~~~a~~~l~ei~~~~~~~~~~l~~~~~~ 283 (930)
+..+...+++|+..++............ ..-..+++.++. .+.+. .+++.|.+++..++...... ..+++.+..
T Consensus 68 N~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~-~~~~e~l~~ 146 (278)
T 4ffb_C 68 NVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI-TQSVELVIP 146 (278)
T ss_dssp SHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS-HHHHHHHGG
T ss_pred hHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH-HHHHHHHHH
Confidence 4567889999999999753110000000 112345666664 46665 46788999999888754321 112222211
Q ss_pred hHHhhhchhhccCcHh----HHhhHHHHHHHHHHhhhHHHHhcChhHHHHHHHHHhcccCCCCCchhhhhcHHHHHHHHH
Q 002370 284 LKELLLLPALTDGDEK----VIGGLACLMSEIGQAAPSLIVEASPEALALADALLSCVAFPSEDWEIADSTLQFWSTLAS 359 (930)
Q Consensus 284 l~~~~~~~~~~~~d~d----~~~~l~~l~~~~~e~~~~~l~~~~~~~~~ll~~ll~~~~~p~~d~~v~~~~~~fW~~l~~ 359 (930)
+..+...- .+..+.+++.++|-..... ......++..+..+.+++ |.+|...+...-..+-.
T Consensus 147 --------~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~~----k~~l~~i~~~l~k~l~d~--~~~VR~aA~~l~~~ly~ 212 (278)
T 4ffb_C 147 --------FFEKKLPKLIAAAANCVYELMAAFGLTNVNV----QTFLPELLKHVPQLAGHG--DRNVRSQTMNLIVEIYK 212 (278)
T ss_dssp --------GGGCSCHHHHHHHHHHHHHHHHHHTTTTCCH----HHHHHHHGGGHHHHHTCS--SHHHHHHHHHHHHHHHT
T ss_pred --------HHhccCHHHHHHHHHHHHHHHHHhCCCcCCc----hhHHHHHHHHHHHHHhCC--cHHHHHHHHHHHHHHHH
Confidence 22222332 2233344444333221100 011234666777788887 78888877766444322
Q ss_pred HhhccchhhhhhhhhhhhhcHHHHHHHHHHHHHHhc
Q 002370 360 YILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQ 395 (930)
Q Consensus 360 ~l~~~~~~~~~~~~~~~~~~~~~~~~Ll~~l~~k~~ 395 (930)
.+ ...............+|...+-++..+.|+.
T Consensus 213 ~~---G~~~~~~~~~~l~~lkp~~~k~le~~f~k~~ 245 (278)
T 4ffb_C 213 VT---GNNSDLLEEILFKKLKPIQVKDLHKLFAKVG 245 (278)
T ss_dssp C--------------CTTSSCHHHHHHHHHHHSCCC
T ss_pred Hh---CcchhhhhhhhhhcCCHHHHHHHHHHHHhcC
Confidence 21 1100000011223445655555666666653
No 83
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=22.34 E-value=1.7e+02 Score=25.12 Aligned_cols=53 Identities=25% Similarity=0.078 Sum_probs=35.8
Q ss_pred HHHhccCCChHHHHHHHHHHHHhhcChHHHHHHHHhhccCCCCCCccchhHHhhhHHhHH
Q 002370 13 VHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKR 72 (930)
Q Consensus 13 v~~ly~~~d~~~~~~A~~~L~~fq~s~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~ 72 (930)
+..+..++|+..|..|-..|.++. .+++......+|..+ +..||..|+..|..
T Consensus 47 L~~~L~d~~~~vR~~A~~aL~~~~-~~~a~~~L~~~L~d~------~~~VR~~A~~aL~~ 99 (131)
T 1te4_A 47 LLESLSNEDWRIRGAAAWIIGNFQ-DERAVEPLIKLLEDD------SGFVRSGAARSLEQ 99 (131)
T ss_dssp HHHGGGCSCHHHHHHHHHHHGGGC-SHHHHHHHHHHHHHC------CTHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHcCC------CHHHHHHHHHHHHH
Confidence 334444677778888888777776 466777777777643 25788887777754
No 84
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=22.32 E-value=5e+02 Score=24.50 Aligned_cols=92 Identities=12% Similarity=0.085 Sum_probs=51.8
Q ss_pred chHHHHHHHHHhccc----c-chhHHHHHHHHHHHHHhhcccCCCccHH-HHHHHHHHHHhcCCChhhHHHHHHHHHHHH
Q 002370 526 NARPLLLFLAAGISE----A-VSSNACASALRKICEDASALIDEPSNLE-ILMWIGEALEKRHLPLEDEEEVVGAISLIL 599 (930)
Q Consensus 526 ~L~~vl~~l~~~l~~----p-~v~~~Aa~al~~lc~~c~~~l~~p~~~~-~l~~~~~~l~~~~l~~~~~~~l~eai~~vi 599 (930)
|+...++-++.++-. + .++..||..+..+|+.++..-. ..-+ ....+...+.++.-+...+...+-|++
T Consensus 84 YlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~~~~~y~--~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~--- 158 (196)
T 4atg_A 84 YLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDTYSRSYK--TLAPRVLKTLKGVWMDPNRSEDSQYGALYCLS--- 158 (196)
T ss_dssp GHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTTTST--THHHHHHHHHHHHHTCTTSCHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhCccCc--hHHHHHHHHHHHHHcCCCCChHHHHHHHHHHH---
Confidence 444444444443321 2 5899999999999999997542 2333 344444555444434444444444433
Q ss_pred ccCCchHHHHHHHHHHHHHHHHHHHhhhh
Q 002370 600 GSVSNKELKNNLLARLLSSSYEAIGKLID 628 (930)
Q Consensus 600 ~~~p~~~~~~~~l~~ll~p~~~~l~~~~~ 628 (930)
++.. +.++.++-|.+..+.+-+.
T Consensus 159 -~lG~-----~~vr~~llP~l~~~~~~~~ 181 (196)
T 4atg_A 159 -ILSK-----NVVNTVIREHAEEYKRTIG 181 (196)
T ss_dssp -HHCH-----HHHHTHHHHHHHHHHHHTC
T ss_pred -HhHH-----HHHHHhhhcCHHHHHHHHH
Confidence 3332 3356677677777665544
Done!