Query 002371
Match_columns 930
No_of_seqs 628 out of 3735
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 23:38:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002371.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002371hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kg2_A Glutamate receptor 2; I 100.0 6.3E-99 2E-103 935.7 64.4 762 25-853 1-814 (823)
2 3o21_A Glutamate receptor 3; p 100.0 2.4E-52 8.2E-57 469.5 41.9 368 24-420 3-380 (389)
3 3om0_A Glutamate receptor, ion 100.0 8.1E-51 2.8E-55 459.0 36.6 369 25-421 3-382 (393)
4 3h6g_A Glutamate receptor, ion 100.0 1.8E-50 6.3E-55 456.6 37.5 369 24-422 2-385 (395)
5 4f11_A Gamma-aminobutyric acid 100.0 1.5E-50 5E-55 463.3 35.5 371 22-415 10-405 (433)
6 3hsy_A Glutamate receptor 2; l 100.0 4.3E-50 1.5E-54 449.7 36.9 364 25-419 1-373 (376)
7 4gpa_A Glutamate receptor 4; P 100.0 5.2E-49 1.8E-53 444.1 43.0 374 23-425 2-383 (389)
8 3saj_A Glutamate receptor 1; r 100.0 2.1E-49 7.2E-54 445.6 37.1 367 22-424 6-381 (384)
9 1jdp_A NPR-C, atrial natriuret 100.0 1.7E-48 5.7E-53 447.2 41.8 363 23-416 6-397 (441)
10 1dp4_A Atrial natriuretic pept 100.0 6.1E-48 2.1E-52 442.0 36.6 360 25-415 1-398 (435)
11 2e4u_A Metabotropic glutamate 100.0 3.8E-47 1.3E-51 447.3 42.1 389 22-456 10-485 (555)
12 3qek_A NMDA glutamate receptor 100.0 1.7E-47 5.7E-52 430.5 33.7 338 23-413 2-369 (384)
13 3sm9_A Mglur3, metabotropic gl 100.0 4.3E-47 1.5E-51 437.0 37.2 367 22-412 9-462 (479)
14 3ks9_A Mglur1, metabotropic gl 100.0 8.4E-46 2.9E-50 428.2 37.8 370 22-413 13-475 (496)
15 3mq4_A Mglur7, metabotropic gl 100.0 7.1E-47 2.4E-51 436.5 24.3 369 22-412 12-467 (481)
16 3i45_A Twin-arginine transloca 100.0 1.6E-42 5.6E-47 390.4 32.6 361 24-426 3-372 (387)
17 4f06_A Extracellular ligand-bi 100.0 1.4E-42 4.7E-47 388.2 31.3 338 23-401 2-347 (371)
18 3h5l_A Putative branched-chain 100.0 2.3E-42 8E-47 393.5 29.4 352 21-411 9-394 (419)
19 3ipc_A ABC transporter, substr 100.0 4.9E-41 1.7E-45 374.0 32.3 345 25-414 1-352 (356)
20 4gnr_A ABC transporter substra 100.0 5.8E-41 2E-45 372.8 31.9 338 22-410 3-350 (353)
21 3td9_A Branched chain amino ac 100.0 2E-40 7E-45 370.4 31.2 342 23-415 13-364 (366)
22 3i09_A Periplasmic branched-ch 100.0 6.9E-40 2.3E-44 367.4 34.1 334 24-403 2-342 (375)
23 3hut_A Putative branched-chain 100.0 1.6E-39 5.3E-44 362.1 33.0 344 24-413 2-353 (358)
24 1usg_A Leucine-specific bindin 100.0 1.2E-39 4.3E-44 361.1 32.0 339 25-408 1-345 (346)
25 3n0w_A ABC branched chain amin 100.0 1.1E-39 3.9E-44 366.1 31.8 336 23-403 3-346 (379)
26 3lkb_A Probable branched-chain 100.0 3.8E-40 1.3E-44 371.9 27.1 353 23-418 4-379 (392)
27 3n0x_A Possible substrate bind 100.0 6.1E-40 2.1E-44 367.4 25.9 333 24-404 2-349 (374)
28 3eaf_A ABC transporter, substr 100.0 2.8E-39 9.6E-44 364.4 31.4 349 24-414 2-372 (391)
29 3lop_A Substrate binding perip 100.0 3.7E-39 1.3E-43 359.9 28.9 343 24-409 3-358 (364)
30 3qel_B Glutamate [NMDA] recept 100.0 3.6E-39 1.2E-43 357.2 27.5 339 24-418 2-355 (364)
31 4evq_A Putative ABC transporte 100.0 1E-38 3.4E-43 358.0 31.5 345 22-413 12-363 (375)
32 4eyg_A Twin-arginine transloca 100.0 1.8E-38 6E-43 355.0 32.0 342 23-409 3-353 (368)
33 3sg0_A Extracellular ligand-bi 100.0 1.8E-37 6.1E-42 349.3 23.7 344 22-408 23-385 (386)
34 1pea_A Amidase operon; gene re 100.0 1.2E-35 4.2E-40 333.9 34.8 347 23-411 4-357 (385)
35 3snr_A Extracellular ligand-bi 100.0 6.5E-36 2.2E-40 333.4 26.1 342 22-408 3-361 (362)
36 2h4a_A YRAM (HI1655); perplasm 100.0 5.2E-31 1.8E-35 285.1 18.9 307 28-408 2-317 (325)
37 3ckm_A YRAM (HI1655), LPOA; pe 100.0 3.2E-30 1.1E-34 282.3 20.2 313 26-410 2-321 (327)
38 1yae_A Glutamate receptor, ion 99.9 6.9E-27 2.4E-31 254.3 15.2 271 460-819 11-304 (312)
39 3g3k_A Glutamate receptor, ion 99.9 6.5E-25 2.2E-29 231.9 15.1 235 460-806 2-258 (259)
40 1pb7_A N-methyl-D-aspartate re 99.9 3.8E-25 1.3E-29 237.7 11.2 236 462-807 41-292 (292)
41 4h5g_A Amino acid ABC superfam 99.9 4.7E-24 1.6E-28 222.9 17.7 220 462-801 12-237 (243)
42 2a5s_A N-methyl-D-aspartate re 99.9 6.3E-25 2.2E-29 235.2 7.4 241 458-806 25-283 (284)
43 2rc8_A Glutamate [NMDA] recept 99.9 4.1E-24 1.4E-28 230.1 11.5 224 473-806 58-293 (294)
44 4gvo_A LMO2349 protein; struct 99.9 9.1E-24 3.1E-28 220.7 13.7 222 460-801 7-235 (243)
45 3kzg_A Arginine 3RD transport 99.9 7.2E-23 2.5E-27 213.0 17.6 218 462-802 3-231 (237)
46 2v3u_A Glutamate receptor delt 99.9 1.1E-22 3.7E-27 215.5 17.1 235 460-806 1-264 (265)
47 4f3p_A Glutamine-binding perip 99.9 2.8E-22 9.7E-27 210.2 19.0 221 459-802 21-243 (249)
48 3i6v_A Periplasmic His/Glu/Gln 99.9 1E-22 3.5E-27 211.1 15.3 221 460-810 3-226 (232)
49 3k4u_A Binding component of AB 99.9 2.4E-22 8.3E-27 210.1 17.9 223 460-801 3-228 (245)
50 1mqi_A Glutamate receptor 2; G 99.9 1.8E-22 6.2E-27 213.6 16.9 233 460-806 2-262 (263)
51 3del_B Arginine binding protei 99.9 4.9E-22 1.7E-26 207.3 17.6 223 460-807 9-238 (242)
52 3hv1_A Polar amino acid ABC up 99.9 7.1E-22 2.4E-26 209.6 17.6 225 460-805 19-252 (268)
53 3kbr_A Cyclohexadienyl dehydra 99.9 3.5E-22 1.2E-26 207.9 14.5 222 460-801 13-237 (239)
54 3tql_A Arginine-binding protei 99.9 1.4E-21 4.8E-26 201.4 18.0 218 462-800 2-227 (227)
55 1ii5_A SLR1257 protein; membra 99.9 3.4E-21 1.2E-25 199.5 19.0 218 461-801 3-226 (233)
56 4eq9_A ABC transporter substra 99.9 2E-21 6.8E-26 203.1 15.9 224 460-804 6-238 (246)
57 3h7m_A Sensor protein; histidi 99.9 3.9E-21 1.3E-25 199.1 17.3 219 460-801 9-230 (234)
58 3mpk_A Virulence sensor protei 99.9 5.5E-21 1.9E-25 202.7 17.5 219 460-801 30-252 (267)
59 1lst_A Lysine, arginine, ornit 99.9 6.5E-21 2.2E-25 198.3 17.3 221 461-801 3-232 (239)
60 1wdn_A GLNBP, glutamine bindin 99.8 1E-20 3.5E-25 194.7 17.7 217 462-801 3-222 (226)
61 4dz1_A DALS D-alanine transpor 99.8 1.2E-20 4.3E-25 198.9 17.3 222 460-801 27-253 (259)
62 2y7i_A STM4351; arginine-bindi 99.8 2.4E-20 8.3E-25 192.5 18.5 218 460-801 4-228 (229)
63 2iee_A ORF2, probable ABC tran 99.8 8.5E-21 2.9E-25 201.7 12.1 219 460-801 19-246 (271)
64 2q88_A EHUB, putative ABC tran 99.8 5E-20 1.7E-24 194.0 15.1 221 461-800 12-239 (257)
65 3qax_A Probable ABC transporte 99.8 1E-19 3.5E-24 192.7 17.4 218 460-801 29-253 (268)
66 2pyy_A Ionotropic glutamate re 99.8 5.7E-20 2E-24 189.4 14.4 218 462-801 3-222 (228)
67 2pvu_A ARTJ; basic amino acid 99.8 1.6E-19 5.6E-24 191.9 18.0 219 460-801 40-262 (272)
68 4i62_A Amino acid ABC transpor 99.8 1.2E-19 4.2E-24 192.3 16.6 220 461-801 38-264 (269)
69 1xt8_A Putative amino-acid tra 99.8 1.9E-19 6.4E-24 193.6 15.9 218 461-801 43-265 (292)
70 2yjp_A Putative ABC transporte 99.8 2.3E-19 8E-24 192.6 16.2 218 461-801 54-276 (291)
71 2vha_A Periplasmic binding tra 99.8 2.9E-19 9.8E-24 191.6 16.1 221 461-802 16-249 (287)
72 2yln_A Putative ABC transporte 99.8 3E-19 1E-23 190.9 15.4 216 461-801 56-277 (283)
73 2v25_A Major cell-binding fact 99.7 1.5E-17 5E-22 175.0 12.8 215 461-800 37-258 (259)
74 3n5l_A Binding protein compone 98.8 1.3E-08 4.5E-13 109.1 11.2 215 461-800 3-242 (310)
75 3p7i_A PHND, subunit of alkylp 98.7 7.1E-08 2.4E-12 103.6 13.3 216 460-800 12-251 (321)
76 2h3h_A Sugar ABC transporter, 98.6 1.7E-06 5.9E-11 93.0 21.4 208 27-254 2-216 (313)
77 3ksm_A ABC-type sugar transpor 98.6 1.2E-06 4.1E-11 92.2 19.4 209 27-254 1-221 (276)
78 2ozz_A Hypothetical protein YH 98.6 1.9E-07 6.3E-12 93.2 12.1 181 485-800 28-223 (231)
79 2qh8_A Uncharacterized protein 98.6 2E-06 6.7E-11 92.0 19.0 203 23-242 5-216 (302)
80 2rjo_A Twin-arginine transloca 98.5 6.3E-06 2.1E-10 89.4 22.8 205 25-244 4-222 (332)
81 3brq_A HTH-type transcriptiona 98.5 1.7E-06 5.9E-11 92.0 17.8 212 23-254 16-236 (296)
82 3d02_A Putative LACI-type tran 98.5 5.9E-06 2E-10 88.2 22.0 211 25-254 3-223 (303)
83 3brs_A Periplasmic binding pro 98.5 4.5E-06 1.5E-10 88.4 20.5 210 26-254 5-224 (289)
84 1tjy_A Sugar transport protein 98.5 1.1E-05 3.9E-10 86.7 22.1 206 28-254 5-222 (316)
85 3rot_A ABC sugar transporter, 98.5 4E-06 1.4E-10 89.3 18.4 203 26-246 3-215 (297)
86 2fn9_A Ribose ABC transporter, 98.5 8.4E-06 2.9E-10 86.4 20.8 197 27-243 3-215 (290)
87 1dbq_A Purine repressor; trans 98.5 6.2E-06 2.1E-10 87.3 19.5 211 25-254 6-223 (289)
88 2qu7_A Putative transcriptiona 98.4 1.2E-06 4E-11 93.1 13.3 202 24-247 6-215 (288)
89 2x7x_A Sensor protein; transfe 98.4 1.5E-05 5.2E-10 86.0 20.2 210 25-254 5-222 (325)
90 3l49_A ABC sugar (ribose) tran 98.4 1.1E-05 3.8E-10 85.4 18.4 209 25-254 4-224 (291)
91 3o1i_D Periplasmic protein TOR 98.4 7.9E-06 2.7E-10 87.2 17.3 205 25-244 4-218 (304)
92 2vk2_A YTFQ, ABC transporter p 98.3 2.4E-05 8.2E-10 83.6 20.8 212 26-254 2-227 (306)
93 2fvy_A D-galactose-binding per 98.3 2.2E-05 7.4E-10 84.0 20.5 204 27-242 3-226 (309)
94 3c3k_A Alanine racemase; struc 98.3 2E-05 6.8E-10 83.3 19.5 202 25-251 7-216 (285)
95 3lkv_A Uncharacterized conserv 98.3 2E-05 6.9E-10 83.9 19.5 191 22-228 4-203 (302)
96 3gbv_A Putative LACI-family tr 98.3 1.9E-05 6.6E-10 84.2 19.4 212 23-254 5-232 (304)
97 3lft_A Uncharacterized protein 98.3 3.6E-05 1.2E-09 81.8 21.2 200 26-243 2-210 (295)
98 2iks_A DNA-binding transcripti 98.3 3E-05 1E-09 82.3 20.1 211 23-254 17-233 (293)
99 3h75_A Periplasmic sugar-bindi 98.3 7.2E-05 2.5E-09 81.6 23.1 214 26-254 3-241 (350)
100 3g1w_A Sugar ABC transporter; 98.3 6.8E-05 2.3E-09 80.0 22.5 212 26-255 4-222 (305)
101 2h0a_A TTHA0807, transcription 98.3 3.2E-06 1.1E-10 88.9 11.6 202 28-251 1-212 (276)
102 2ioy_A Periplasmic sugar-bindi 98.3 6.9E-05 2.3E-09 79.0 21.9 205 28-254 3-216 (283)
103 3l6u_A ABC-type sugar transpor 98.3 5.8E-05 2E-09 79.9 21.4 209 24-254 6-228 (293)
104 2fep_A Catabolite control prot 98.3 2.3E-05 7.9E-10 83.0 18.1 211 24-254 14-231 (289)
105 3d8u_A PURR transcriptional re 98.3 2.6E-05 9E-10 81.8 18.2 204 26-249 3-211 (275)
106 2o20_A Catabolite control prot 98.2 1.9E-05 6.4E-10 85.6 17.3 211 24-254 61-275 (332)
107 8abp_A L-arabinose-binding pro 98.2 4.4E-05 1.5E-09 81.4 19.9 216 25-255 1-233 (306)
108 3clk_A Transcription regulator 98.2 8.7E-06 3E-10 86.3 13.9 203 25-247 7-213 (290)
109 2rgy_A Transcriptional regulat 98.2 1.5E-05 5.1E-10 84.5 15.2 210 25-254 7-225 (290)
110 2hsg_A Glucose-resistance amyl 98.2 1.3E-05 4.6E-10 86.7 15.1 212 23-254 57-275 (332)
111 1jx6_A LUXP protein; protein-l 98.2 8.1E-05 2.8E-09 80.9 21.2 208 23-243 40-258 (342)
112 3bbl_A Regulatory protein of L 98.2 1.6E-05 5.4E-10 84.1 14.9 209 26-254 4-224 (287)
113 3dbi_A Sugar-binding transcrip 98.2 4.4E-05 1.5E-09 82.9 18.3 212 24-254 59-278 (338)
114 3m9w_A D-xylose-binding peripl 98.2 0.00011 3.9E-09 78.5 21.3 200 26-244 2-213 (313)
115 3o74_A Fructose transport syst 98.2 6.8E-05 2.3E-09 78.4 18.9 207 27-254 3-215 (272)
116 3k4h_A Putative transcriptiona 98.1 4E-05 1.4E-09 81.2 16.9 212 24-254 6-228 (292)
117 3ctp_A Periplasmic binding pro 98.1 1.6E-05 5.5E-10 86.0 13.8 201 24-250 58-262 (330)
118 1qpz_A PURA, protein (purine n 98.1 0.00012 4E-09 79.5 19.2 211 25-254 57-274 (340)
119 3gyb_A Transcriptional regulat 98.0 2.2E-05 7.6E-10 82.6 11.2 205 25-254 4-212 (280)
120 3k9c_A Transcriptional regulat 98.0 0.00026 9E-09 74.7 19.3 209 23-254 9-221 (289)
121 3egc_A Putative ribose operon 98.0 4.5E-05 1.5E-09 80.7 13.3 211 24-254 6-222 (291)
122 3hcw_A Maltose operon transcri 98.0 0.0004 1.4E-08 73.5 20.6 210 24-254 5-228 (295)
123 3gv0_A Transcriptional regulat 98.0 0.00018 6.1E-09 76.0 17.6 204 24-247 6-216 (288)
124 2dri_A D-ribose-binding protei 97.9 0.00087 3E-08 69.9 22.1 205 28-254 3-215 (271)
125 3kjx_A Transcriptional regulat 97.9 0.00023 7.8E-09 77.4 18.1 209 24-252 66-280 (344)
126 3tb6_A Arabinose metabolism tr 97.9 0.00016 5.4E-09 76.7 15.6 208 26-252 15-234 (298)
127 3jy6_A Transcriptional regulat 97.9 0.00051 1.7E-08 71.9 19.1 205 24-252 5-214 (276)
128 3bil_A Probable LACI-family tr 97.9 0.00034 1.2E-08 76.1 18.0 208 25-254 65-277 (348)
129 3qk7_A Transcriptional regulat 97.8 0.00016 5.6E-09 76.5 14.7 209 25-254 5-223 (294)
130 3kke_A LACI family transcripti 97.8 0.00029 9.9E-09 75.0 16.7 210 23-254 12-233 (303)
131 1byk_A Protein (trehalose oper 97.8 0.00068 2.3E-08 69.9 19.0 198 28-254 4-205 (255)
132 3e3m_A Transcriptional regulat 97.8 0.0012 4.2E-08 71.9 21.8 208 25-251 69-282 (355)
133 1gud_A ALBP, D-allose-binding 97.8 0.002 6.7E-08 67.8 22.7 209 28-254 3-227 (288)
134 3g85_A Transcriptional regulat 97.8 0.0001 3.5E-09 77.8 12.5 206 22-249 7-218 (289)
135 3cs3_A Sugar-binding transcrip 97.8 0.00073 2.5E-08 70.7 18.9 199 24-252 6-210 (277)
136 2fqx_A Membrane lipoprotein TM 97.8 0.0013 4.4E-08 70.4 20.5 207 25-252 3-220 (318)
137 3uug_A Multiple sugar-binding 97.8 0.0007 2.4E-08 72.9 18.6 206 25-247 2-232 (330)
138 3ksx_A Nitrate transport prote 97.7 0.00028 9.6E-09 75.9 14.6 93 677-772 121-219 (324)
139 3uif_A Sulfonate ABC transport 97.7 0.00018 6.3E-09 78.2 12.8 108 677-786 109-228 (348)
140 3e61_A Putative transcriptiona 97.7 0.00042 1.4E-08 72.5 14.8 200 25-252 7-210 (277)
141 3h5o_A Transcriptional regulat 97.7 0.0016 5.4E-08 70.4 19.8 206 25-252 61-272 (339)
142 2x26_A Periplasmic aliphatic s 97.7 0.00035 1.2E-08 74.5 14.1 121 678-801 96-232 (308)
143 3huu_A Transcription regulator 97.7 0.00087 3E-08 71.3 16.9 207 23-254 19-238 (305)
144 3hs3_A Ribose operon repressor 97.6 0.00069 2.4E-08 70.9 15.4 199 23-252 7-211 (277)
145 4fe7_A Xylose operon regulator 97.6 0.0015 5.2E-08 72.8 18.4 212 22-254 21-239 (412)
146 3jvd_A Transcriptional regulat 97.6 0.0024 8.2E-08 68.8 18.9 201 24-254 62-267 (333)
147 3un6_A Hypothetical protein sa 97.6 0.00013 4.6E-09 79.1 8.8 122 677-801 143-283 (341)
148 1jye_A Lactose operon represso 97.6 0.003 1E-07 68.5 19.7 204 25-252 60-271 (349)
149 3s99_A Basic membrane lipoprot 97.6 0.005 1.7E-07 66.5 20.9 201 22-243 22-230 (356)
150 2hqb_A Transcriptional activat 97.5 0.016 5.4E-07 61.1 23.1 195 25-242 4-204 (296)
151 3qsl_A Putative exported prote 97.4 0.00085 2.9E-08 72.7 12.5 137 499-750 59-205 (346)
152 3miz_A Putative transcriptiona 97.4 0.00034 1.2E-08 74.3 8.6 203 23-247 10-225 (301)
153 2f5x_A BUGD; periplasmic bindi 97.3 0.003 1E-07 66.9 14.3 121 677-799 121-275 (312)
154 3ix1_A N-formyl-4-amino-5-amin 97.2 0.00053 1.8E-08 72.9 8.4 78 485-570 15-96 (302)
155 2qpq_A Protein BUG27; alpha/be 97.1 0.0046 1.6E-07 65.2 14.1 121 677-799 112-266 (301)
156 2dvz_A BUGE, putative exported 97.1 0.0043 1.5E-07 65.7 13.4 122 677-799 125-279 (314)
157 3qi7_A Putative transcriptiona 97.1 0.016 5.6E-07 61.7 17.5 217 24-246 10-252 (371)
158 3h5t_A Transcriptional regulat 97.0 0.007 2.4E-07 66.1 14.2 205 24-247 66-296 (366)
159 4ddd_A Immunogenic protein; ss 96.6 0.0034 1.1E-07 67.3 8.1 62 677-740 136-203 (327)
160 3ixl_A Amdase, arylmalonate de 96.6 0.03 1E-06 56.6 14.6 129 81-237 56-199 (240)
161 2x7q_A Ca3427, possible thiami 96.5 0.0097 3.3E-07 63.6 10.7 91 677-772 110-210 (321)
162 2k1e_A Water soluble analogue 96.5 0.0024 8.2E-08 55.2 4.5 79 593-675 18-98 (103)
163 2ih3_C Voltage-gated potassium 96.0 0.0081 2.8E-07 53.6 5.5 76 595-674 41-118 (122)
164 2g29_A Nitrate transport prote 95.8 0.033 1.1E-06 61.8 11.0 103 683-788 151-272 (417)
165 2a9h_A Voltage-gated potassium 95.5 0.021 7.3E-07 53.1 6.5 77 595-675 64-142 (155)
166 3eff_K Voltage-gated potassium 95.4 0.026 9.1E-07 51.6 7.0 75 596-674 21-97 (139)
167 3jv9_A OXYR, transcriptional r 95.2 0.21 7.3E-06 48.9 13.6 192 462-786 4-206 (219)
168 3ho7_A OXYR; beta-alpha-barrel 95.1 0.19 6.4E-06 50.0 12.7 84 461-570 10-93 (232)
169 1zbm_A Hypothetical protein AF 94.7 0.14 4.7E-06 53.2 11.0 99 683-789 99-210 (280)
170 4ab5_A Transcriptional regulat 94.6 0.28 9.5E-06 48.2 12.6 195 461-786 7-205 (222)
171 3oxn_A Putative transcriptiona 94.3 0.62 2.1E-05 46.5 14.6 84 461-570 18-101 (241)
172 2xed_A Putative maleate isomer 94.3 0.48 1.6E-05 48.7 13.6 127 83-237 82-227 (273)
173 4h33_A LMO2059 protein; bilaye 93.9 0.097 3.3E-06 47.6 6.6 57 618-674 42-100 (137)
174 1us5_A Putative GLUR0 ligand b 93.5 0.25 8.5E-06 52.1 10.1 61 677-739 121-187 (314)
175 3fzv_A Probable transcriptiona 93.2 1.8 6.1E-05 44.9 16.2 194 461-786 94-294 (306)
176 3ldc_A Calcium-gated potassium 93.2 0.19 6.5E-06 40.9 6.5 52 619-670 28-81 (82)
177 1atg_A MODA, periplasmic molyb 93.0 0.39 1.3E-05 47.5 10.2 70 492-570 15-90 (231)
178 4gx0_A TRKA domain protein; me 92.7 0.33 1.1E-05 56.1 10.2 123 619-745 51-184 (565)
179 2fyi_A HTH-type transcriptiona 92.6 2.7 9.3E-05 41.3 15.9 196 461-788 13-214 (228)
180 2esn_A Probable transcriptiona 92.6 2 6.7E-05 44.8 15.5 84 461-570 100-186 (310)
181 3ouf_A Potassium channel prote 92.6 0.13 4.5E-06 43.5 5.0 58 619-676 32-91 (97)
182 2zzv_A ABC transporter, solute 92.5 0.46 1.6E-05 51.3 10.5 59 677-743 164-222 (361)
183 2hxr_A HTH-type transcriptiona 92.4 3.1 0.0001 41.1 16.0 83 462-570 30-112 (238)
184 1p7b_A Integral membrane chann 92.0 0.24 8.4E-06 52.1 7.1 62 614-675 91-154 (333)
185 1lnq_A MTHK channels, potassiu 91.9 0.16 5.4E-06 54.4 5.9 124 619-747 45-171 (336)
186 3pjs_K KCSA, voltage-gated pot 91.7 0.018 6.2E-07 54.5 -1.7 60 615-674 63-124 (166)
187 2y7p_A LYSR-type regulatory pr 91.5 2.3 7.8E-05 41.6 13.6 84 461-570 7-90 (218)
188 3gzg_A Molybdate-binding perip 91.4 1 3.6E-05 45.6 11.1 70 492-570 38-113 (253)
189 2q67_A Potassium channel prote 91.4 0.32 1.1E-05 42.5 6.2 56 619-674 49-106 (114)
190 3r26_A Molybdate-binding perip 91.3 1.4 4.9E-05 44.1 11.9 114 678-799 106-232 (237)
191 2ql3_A Probable transcriptiona 91.3 5.3 0.00018 38.2 16.0 84 461-570 4-87 (209)
192 3fxq_A LYSR type regulator of 91.2 2.2 7.4E-05 44.4 13.9 85 462-570 92-176 (305)
193 1sw5_A Osmoprotection protein 91.2 0.62 2.1E-05 48.0 9.3 104 678-786 124-237 (275)
194 1xl4_A Inward rectifier potass 91.0 0.35 1.2E-05 50.3 7.1 61 614-674 77-139 (301)
195 1al3_A Cys regulon transcripti 91.0 7.9 0.00027 40.4 18.1 205 462-800 93-304 (324)
196 4esw_A Pyrimidine biosynthesis 90.9 0.74 2.5E-05 49.2 9.8 67 677-746 101-170 (342)
197 2i49_A Bicarbonate transporter 90.7 0.81 2.8E-05 50.6 10.2 90 682-772 153-255 (429)
198 2pfz_A Putative exported prote 90.3 1.7 5.9E-05 45.3 11.8 57 677-741 128-184 (301)
199 2dgd_A 223AA long hypothetical 90.2 1.9 6.6E-05 42.7 11.6 81 147-230 96-183 (223)
200 3s99_A Basic membrane lipoprot 90.0 2.5 8.7E-05 45.1 13.0 91 26-125 149-239 (356)
201 1orq_C Potassium channel; volt 89.8 0.45 1.6E-05 47.3 6.5 73 596-672 146-220 (223)
202 3vou_A ION transport 2 domain 89.6 0.7 2.4E-05 42.5 7.1 55 619-673 52-108 (148)
203 2hzl_A Trap-T family sorbitol/ 89.5 1.2 4E-05 48.1 10.0 87 677-772 163-252 (365)
204 1i6a_A OXYR, hydrogen peroxide 89.4 0.61 2.1E-05 45.8 7.1 84 461-570 4-87 (219)
205 2pfy_A Putative exported prote 89.4 1.6 5.4E-05 45.7 10.6 57 677-741 129-185 (301)
206 2fqx_A Membrane lipoprotein TM 89.1 6.4 0.00022 41.3 15.2 126 28-160 131-264 (318)
207 2eq5_A 228AA long hypothetical 87.4 3.4 0.00012 40.9 11.1 116 83-230 67-186 (228)
208 1ixc_A CBNR, LYSR-type regulat 87.0 8.2 0.00028 39.4 14.4 84 461-570 90-173 (294)
209 1uth_A LYSR-type regulatory pr 86.7 5.3 0.00018 41.6 12.8 84 461-570 104-187 (315)
210 1twy_A ABC transporter, peripl 86.1 18 0.00061 36.6 16.4 71 491-570 42-113 (290)
211 2h9b_A HTH-type transcriptiona 86.0 20 0.00068 37.0 16.9 82 463-570 91-172 (312)
212 2hqb_A Transcriptional activat 85.4 8.9 0.00031 39.6 13.6 121 27-161 127-248 (296)
213 3bfj_A 1,3-propanediol oxidore 85.1 4.9 0.00017 43.5 11.7 88 149-238 23-114 (387)
214 3ox4_A Alcohol dehydrogenase 2 84.7 3.9 0.00013 44.2 10.6 90 148-239 20-111 (383)
215 2h98_A HTH-type transcriptiona 84.3 28 0.00097 35.9 17.1 82 463-570 91-172 (313)
216 2qks_A KIR3.1-prokaryotic KIR 83.8 1.9 6.4E-05 45.2 7.3 57 619-675 78-136 (321)
217 3beh_A MLL3241 protein; transm 83.5 0.72 2.5E-05 49.6 4.1 74 595-672 141-216 (355)
218 3k6v_A Solute-binding protein 83.2 18 0.00063 38.3 14.9 69 493-570 59-133 (354)
219 2zsk_A PH1733, 226AA long hypo 83.0 5.3 0.00018 39.5 10.0 80 83-191 65-144 (226)
220 1jfl_A Aspartate racemase; alp 82.1 8.1 0.00028 38.2 11.0 81 82-191 65-145 (228)
221 2q5c_A NTRC family transcripti 81.6 30 0.001 33.1 14.4 159 26-244 4-162 (196)
222 2r9r_B Paddle chimera voltage 80.3 1.4 4.7E-05 49.8 5.0 72 597-672 357-430 (514)
223 3hhf_B Transcriptional regulat 79.9 2.7 9.2E-05 40.5 6.6 81 461-570 6-86 (213)
224 3kos_A HTH-type transcriptiona 78.6 15 0.00053 35.1 11.8 106 679-786 95-203 (219)
225 1rrm_A Lactaldehyde reductase; 78.4 7.4 0.00025 42.1 10.0 89 149-239 21-111 (386)
226 3onm_A Transcriptional regulat 78.4 43 0.0015 32.5 15.2 82 461-570 26-107 (238)
227 3l6g_A Betaine ABC transporter 78.0 8.4 0.00029 38.9 9.6 97 671-772 89-199 (256)
228 3ukm_A Potassium channel subfa 77.8 2.1 7.2E-05 43.6 4.9 67 619-685 201-276 (280)
229 1vlj_A NADH-dependent butanol 75.3 10 0.00034 41.3 10.0 88 149-238 33-123 (407)
230 2rin_A Putative glycine betain 75.2 6.8 0.00023 40.6 8.3 65 678-743 104-182 (298)
231 1xs5_A 29 kDa protein, membran 75.1 38 0.0013 33.6 13.4 36 495-538 21-56 (241)
232 2l82_A Designed protein OR32; 75.0 23 0.00077 29.2 9.3 97 136-243 4-104 (162)
233 3cij_A UPF0100 protein AF_0094 74.5 48 0.0016 33.8 14.7 70 492-570 20-95 (295)
234 2gzm_A Glutamate racemase; enz 73.9 18 0.00062 36.6 10.9 119 81-228 55-186 (267)
235 3cfz_A UPF0100 protein MJ1186; 73.8 34 0.0012 35.0 13.3 70 492-570 20-95 (292)
236 2dwu_A Glutamate racemase; iso 72.8 22 0.00075 36.2 11.2 119 81-228 59-190 (276)
237 1o2d_A Alcohol dehydrogenase, 72.7 14 0.00047 39.6 10.1 87 149-238 31-120 (371)
238 2xwv_A Sialic acid-binding per 72.6 16 0.00056 37.9 10.5 60 677-743 133-192 (312)
239 3m9w_A D-xylose-binding peripl 72.6 11 0.00038 39.0 9.3 79 160-243 3-84 (313)
240 2hpg_A ABC transporter, peripl 72.4 8.9 0.00031 40.3 8.4 60 677-743 148-207 (327)
241 2oho_A Glutamate racemase; iso 71.6 11 0.00037 38.4 8.6 83 82-192 65-150 (273)
242 1r9l_A Glycine betaine-binding 71.4 13 0.00044 38.7 9.3 59 459-539 5-63 (309)
243 1mkz_A Molybdenum cofactor bio 71.2 17 0.00057 34.1 9.1 65 159-227 10-78 (172)
244 3tmg_A Glycine betaine, L-prol 71.1 23 0.00078 36.2 11.0 90 678-772 109-216 (280)
245 3cfx_A UPF0100 protein MA_0280 71.0 75 0.0026 32.4 15.2 70 492-570 20-95 (296)
246 3uhj_A Probable glycerol dehyd 69.7 5.5 0.00019 43.0 6.1 82 149-236 43-126 (387)
247 3g1w_A Sugar ABC transporter; 69.0 9.7 0.00033 39.3 7.8 80 160-243 5-87 (305)
248 4edp_A ABC transporter, substr 69.0 47 0.0016 34.6 13.5 83 717-799 215-299 (351)
249 3ist_A Glutamate racemase; str 67.3 20 0.00067 36.4 9.3 119 82-228 58-188 (269)
250 1nh8_A ATP phosphoribosyltrans 65.7 20 0.0007 36.6 8.8 101 678-787 120-224 (304)
251 2czl_A Hypothetical protein TT 65.4 14 0.00047 37.4 8.0 59 682-744 91-150 (272)
252 2jfq_A Glutamate racemase; cel 65.3 45 0.0016 34.0 11.8 120 81-228 74-206 (286)
253 3dbi_A Sugar-binding transcrip 65.2 19 0.00065 37.7 9.3 88 151-243 53-144 (338)
254 1zuw_A Glutamate racemase 1; ( 64.8 44 0.0015 33.8 11.5 121 80-228 54-187 (272)
255 3cvg_A Putative metal binding 64.7 61 0.0021 33.1 12.9 73 489-570 33-115 (294)
256 2pju_A Propionate catabolism o 63.3 67 0.0023 31.4 11.9 135 66-244 39-174 (225)
257 2xxp_A CPS2A; replication, pep 63.1 5.7 0.00019 43.0 4.5 67 677-748 26-98 (398)
258 4dik_A Flavoprotein; TM0755, e 63.1 26 0.0009 38.0 9.9 93 159-258 265-365 (410)
259 1jq5_A Glycerol dehydrogenase; 62.8 16 0.00056 39.1 8.2 95 150-254 23-119 (370)
260 3gbv_A Putative LACI-family tr 62.7 20 0.00068 36.7 8.7 85 157-243 6-95 (304)
261 3hn0_A Nitrate transport prote 62.4 18 0.00062 36.9 8.2 62 688-750 95-161 (283)
262 3l49_A ABC sugar (ribose) tran 62.4 20 0.0007 36.4 8.7 80 159-243 5-87 (291)
263 2jfn_A Glutamate racemase; cel 62.2 32 0.0011 35.2 9.9 40 81-120 73-113 (285)
264 2de3_A Dibenzothiophene desulf 62.0 18 0.00063 38.6 8.4 120 677-801 109-299 (365)
265 3ce9_A Glycerol dehydrogenase; 61.8 20 0.00069 38.0 8.7 97 150-256 25-123 (354)
266 3h75_A Periplasmic sugar-bindi 61.8 17 0.00058 38.4 8.1 81 158-243 2-87 (350)
267 2vvt_A Glutamate racemase; iso 60.0 30 0.001 35.5 9.2 120 80-228 75-207 (290)
268 3ojc_A Putative aspartate/glut 59.8 7.3 0.00025 38.6 4.4 82 81-191 66-148 (231)
269 8abp_A L-arabinose-binding pro 58.8 23 0.00077 36.3 8.3 78 160-243 3-83 (306)
270 3d02_A Putative LACI-type tran 58.7 19 0.00065 36.8 7.7 80 160-243 5-87 (303)
271 3jy6_A Transcriptional regulat 58.4 27 0.00091 35.2 8.7 79 158-243 6-86 (276)
272 1tjy_A Sugar transport protein 58.3 12 0.00041 38.9 6.0 80 160-243 4-86 (316)
273 4euo_A ABC transporter, substr 58.2 1.2E+02 0.0042 30.9 14.1 84 714-797 175-258 (320)
274 3uhf_A Glutamate racemase; str 57.7 63 0.0022 32.7 10.9 103 61-192 47-162 (274)
275 3uug_A Multiple sugar-binding 57.6 23 0.00078 36.8 8.2 79 160-243 4-85 (330)
276 2hxw_A Major antigenic peptide 57.3 18 0.00061 35.5 6.9 40 492-541 16-55 (237)
277 1y5e_A Molybdenum cofactor bio 57.1 47 0.0016 30.8 9.3 67 157-227 11-81 (169)
278 3l6u_A ABC-type sugar transpor 56.6 24 0.00084 35.8 8.1 81 158-243 7-90 (293)
279 1b73_A Glutamate racemase; iso 56.5 35 0.0012 34.2 8.9 119 80-228 51-180 (254)
280 3sya_A G protein-activated inw 56.4 17 0.00058 38.1 6.6 59 618-676 90-152 (340)
281 3r6u_A Choline-binding protein 55.9 51 0.0017 33.6 10.1 90 678-772 130-230 (284)
282 3tb6_A Arabinose metabolism tr 55.9 29 0.00098 35.3 8.5 79 160-243 16-100 (298)
283 2pjk_A 178AA long hypothetical 55.8 41 0.0014 31.5 8.6 67 157-227 13-90 (178)
284 3rfq_A Pterin-4-alpha-carbinol 55.7 31 0.0011 32.6 7.7 65 158-226 29-97 (185)
285 3hl0_A Maleylacetate reductase 55.5 14 0.00049 39.2 6.0 96 149-255 24-121 (353)
286 3um7_A Potassium channel subfa 55.0 12 0.00042 38.6 5.1 54 619-672 224-285 (309)
287 3s81_A Putative aspartate race 54.8 24 0.00084 35.6 7.4 39 81-120 89-127 (268)
288 3k9c_A Transcriptional regulat 54.7 99 0.0034 31.1 12.4 119 27-156 127-253 (289)
289 3p6l_A Sugar phosphate isomera 54.6 52 0.0018 32.8 10.0 94 147-243 24-129 (262)
290 3o74_A Fructose transport syst 54.5 17 0.00057 36.5 6.2 79 160-243 3-83 (272)
291 2is8_A Molybdopterin biosynthe 54.0 37 0.0013 31.3 7.9 63 161-227 3-71 (164)
292 1h3d_A ATP-phosphoribosyltrans 54.0 65 0.0022 32.9 10.2 100 678-787 115-218 (299)
293 3h5o_A Transcriptional regulat 53.9 39 0.0013 35.3 9.3 85 153-243 56-142 (339)
294 3rot_A ABC sugar transporter, 53.9 19 0.00064 36.9 6.6 81 160-243 4-87 (297)
295 3o66_A Glycine betaine/carniti 53.9 47 0.0016 33.8 9.4 90 678-772 129-229 (282)
296 3brq_A HTH-type transcriptiona 53.8 42 0.0014 33.9 9.4 84 154-243 14-102 (296)
297 1ccw_A Protein (glutamate muta 53.7 67 0.0023 28.5 9.4 86 160-254 4-93 (137)
298 2fn9_A Ribose ABC transporter, 53.6 31 0.001 35.0 8.2 79 160-243 3-84 (290)
299 2l69_A Rossmann 2X3 fold prote 53.4 84 0.0029 25.1 8.6 66 139-215 56-121 (134)
300 3kke_A LACI family transcripti 51.3 27 0.00092 35.8 7.3 87 151-243 7-95 (303)
301 3jzd_A Iron-containing alcohol 51.3 15 0.00051 39.1 5.3 97 148-255 25-123 (358)
302 3e3m_A Transcriptional regulat 51.2 39 0.0014 35.5 8.8 85 153-243 64-150 (355)
303 2klu_A T-cell surface glycopro 51.2 34 0.0012 25.7 5.4 11 864-874 42-52 (70)
304 1jye_A Lactose operon represso 51.1 35 0.0012 35.9 8.4 85 155-243 57-143 (349)
305 3lr1_A Tungstate ABC transport 51.1 10 0.00035 37.6 3.7 75 488-571 18-95 (236)
306 3dmy_A Protein FDRA; predicted 50.5 2.2E+02 0.0076 31.2 14.6 145 76-242 45-198 (480)
307 3k4h_A Putative transcriptiona 49.9 29 0.00097 35.2 7.2 82 156-243 5-93 (292)
308 3fd3_A Chromosome replication 49.8 1.2E+02 0.0041 28.0 11.5 68 489-569 15-82 (208)
309 3huu_A Transcription regulator 49.5 23 0.00078 36.4 6.4 87 151-243 14-107 (305)
310 3um7_A Potassium channel subfa 48.8 15 0.00051 37.9 4.6 53 619-671 115-169 (309)
311 3ksm_A ABC-type sugar transpor 48.7 24 0.00084 35.3 6.4 80 161-243 2-85 (276)
312 1i4n_A Indole-3-glycerol phosp 48.6 64 0.0022 32.1 9.0 86 148-244 64-152 (251)
313 1jx6_A LUXP protein; protein-l 48.3 39 0.0013 35.3 8.2 82 160-243 44-129 (342)
314 3szp_A Transcriptional regulat 48.3 9.6 0.00033 38.7 3.2 71 714-786 213-285 (291)
315 2yxb_A Coenzyme B12-dependent 48.1 1E+02 0.0035 28.2 9.9 86 160-254 19-108 (161)
316 2h3h_A Sugar ABC transporter, 48.1 35 0.0012 35.1 7.6 79 161-243 3-83 (313)
317 3lmz_A Putative sugar isomeras 47.8 77 0.0026 31.4 10.0 94 147-243 32-127 (257)
318 2fep_A Catabolite control prot 47.3 45 0.0015 33.8 8.3 79 159-243 16-96 (289)
319 1oj7_A Hypothetical oxidoreduc 47.2 47 0.0016 35.9 8.7 83 150-238 43-128 (408)
320 2fvy_A D-galactose-binding per 46.9 49 0.0017 33.7 8.6 79 160-243 3-85 (309)
321 3cg1_A UPF0100 protein PF0080; 46.6 1.9E+02 0.0064 29.2 13.0 71 493-570 21-100 (296)
322 1p99_A Hypothetical protein PG 46.6 71 0.0024 32.7 9.5 36 495-538 56-91 (295)
323 1ta9_A Glycerol dehydrogenase; 46.4 31 0.001 38.0 7.0 97 149-255 81-179 (450)
324 3isp_A HTH-type transcriptiona 46.2 63 0.0022 32.7 9.3 47 520-570 127-173 (303)
325 2o20_A Catabolite control prot 46.1 48 0.0016 34.4 8.4 84 154-243 58-143 (332)
326 3tsm_A IGPS, indole-3-glycerol 46.0 1.3E+02 0.0044 30.3 10.9 87 148-244 82-171 (272)
327 3iwt_A 178AA long hypothetical 45.9 53 0.0018 30.7 7.8 63 161-227 17-90 (178)
328 3i42_A Response regulator rece 45.7 90 0.0031 26.3 9.0 70 174-254 14-85 (127)
329 2iks_A DNA-binding transcripti 45.6 24 0.00081 36.0 5.8 88 151-243 12-101 (293)
330 3bil_A Probable LACI-family tr 45.5 35 0.0012 35.9 7.2 79 159-243 66-146 (348)
331 2qmw_A PDT, prephenate dehydra 45.3 57 0.0019 32.8 8.1 83 690-774 4-97 (267)
332 3spc_A Inward-rectifier K+ cha 45.2 36 0.0012 35.6 6.9 60 617-676 92-155 (343)
333 4ef1_A Pheromone COB1/lipoprot 44.8 2.1E+02 0.0071 28.3 12.0 65 677-743 91-180 (246)
334 2ioy_A Periplasmic sugar-bindi 44.7 49 0.0017 33.3 8.0 79 160-243 2-83 (283)
335 3dnf_A ISPH, LYTB, 4-hydroxy-3 44.6 36 0.0012 34.7 6.5 53 67-119 185-239 (297)
336 2qsx_A Putative transcriptiona 44.0 95 0.0032 29.5 9.7 69 716-786 140-210 (218)
337 3okf_A 3-dehydroquinate syntha 43.8 59 0.002 34.8 8.5 97 153-254 56-158 (390)
338 2g2c_A Putative molybdenum cof 43.7 36 0.0012 31.5 6.1 63 161-227 7-78 (167)
339 3muq_A Uncharacterized conserv 43.2 13 0.00043 37.0 2.9 75 488-571 18-95 (237)
340 3mwb_A Prephenate dehydratase; 42.9 40 0.0014 34.8 6.7 85 689-774 6-101 (313)
341 2dri_A D-ribose-binding protei 42.2 59 0.002 32.4 8.1 79 160-243 2-83 (271)
342 2jfz_A Glutamate racemase; cel 42.2 1.2E+02 0.004 30.3 10.1 38 83-120 54-91 (255)
343 3gyb_A Transcriptional regulat 41.8 45 0.0016 33.4 7.2 118 27-156 119-244 (280)
344 3out_A Glutamate racemase; str 41.6 55 0.0019 33.0 7.5 40 81-120 59-99 (268)
345 3lte_A Response regulator; str 41.3 96 0.0033 26.4 8.5 68 160-242 7-76 (132)
346 3fni_A Putative diflavin flavo 41.1 1.3E+02 0.0045 27.3 9.5 86 160-255 5-97 (159)
347 3kbq_A Protein TA0487; structu 40.8 62 0.0021 30.1 7.1 62 160-226 4-70 (172)
348 3hs3_A Ribose operon repressor 40.8 51 0.0017 33.1 7.3 70 152-226 3-75 (277)
349 3brs_A Periplasmic binding pro 40.5 2.5E+02 0.0086 27.8 12.8 120 26-155 131-258 (289)
350 3l4e_A Uncharacterized peptida 40.4 54 0.0019 31.5 6.9 99 148-257 16-123 (206)
351 1y80_A Predicted cobalamin bin 40.4 1.2E+02 0.0041 29.1 9.6 88 159-254 88-179 (210)
352 2rjo_A Twin-arginine transloca 40.0 50 0.0017 34.3 7.3 79 160-243 6-89 (332)
353 2vd3_A ATP phosphoribosyltrans 39.9 45 0.0015 33.9 6.4 101 678-787 105-208 (289)
354 2rgy_A Transcriptional regulat 39.8 44 0.0015 33.8 6.7 80 158-243 7-91 (290)
355 3kjx_A Transcriptional regulat 39.2 96 0.0033 32.2 9.5 78 160-243 69-148 (344)
356 2qmx_A Prephenate dehydratase; 39.0 75 0.0026 32.2 8.0 79 689-774 6-95 (283)
357 4a29_A Engineered retro-aldol 38.8 1E+02 0.0036 30.5 8.6 85 150-245 69-156 (258)
358 3qk7_A Transcriptional regulat 38.8 48 0.0017 33.6 6.9 79 158-243 5-89 (294)
359 3d8u_A PURR transcriptional re 38.1 54 0.0019 32.7 7.1 78 160-243 4-83 (275)
360 3gt7_A Sensor protein; structu 37.9 2.1E+02 0.0071 25.1 11.1 58 174-242 18-77 (154)
361 3e61_A Putative transcriptiona 37.9 57 0.0019 32.6 7.2 78 158-243 7-87 (277)
362 3to5_A CHEY homolog; alpha(5)b 37.7 79 0.0027 27.9 7.1 59 174-242 23-83 (134)
363 3t6k_A Response regulator rece 37.7 90 0.0031 27.0 7.7 58 174-242 15-74 (136)
364 3egc_A Putative ribose operon 37.5 34 0.0012 34.6 5.4 81 157-243 6-88 (291)
365 2x7x_A Sensor protein; transfe 37.4 90 0.0031 32.1 8.8 80 159-243 6-88 (325)
366 3gl9_A Response regulator; bet 36.7 1.9E+02 0.0063 24.2 10.5 58 174-242 13-72 (122)
367 3ezx_A MMCP 1, monomethylamine 36.7 1.6E+02 0.0056 28.3 9.8 87 160-254 93-185 (215)
368 3grc_A Sensor protein, kinase; 36.6 94 0.0032 26.8 7.7 67 160-241 7-75 (140)
369 3kht_A Response regulator; PSI 36.1 2.1E+02 0.0071 24.6 10.4 72 174-254 16-89 (144)
370 2bon_A Lipid kinase; DAG kinas 36.0 1.9E+02 0.0065 30.0 11.0 76 160-241 30-105 (332)
371 2fp4_A Succinyl-COA ligase [GD 35.7 3.7E+02 0.013 27.4 14.8 144 76-240 80-234 (305)
372 2nr1_A NR1 M2, M2; receptor, s 35.6 9.4 0.00032 22.9 0.3 19 617-635 6-24 (27)
373 1sg6_A Pentafunctional AROM po 35.4 1.4E+02 0.0049 31.8 10.1 96 154-254 31-140 (393)
374 3c3k_A Alanine racemase; struc 35.2 1E+02 0.0036 30.8 8.7 79 158-243 7-87 (285)
375 1jlj_A Gephyrin; globular alph 35.2 1.1E+02 0.0039 28.8 8.1 68 156-227 11-87 (189)
376 3qvl_A Putative hydantoin race 35.2 3.3E+02 0.011 26.7 15.0 170 27-236 2-193 (245)
377 2vk2_A YTFQ, ABC transporter p 34.8 63 0.0021 33.0 7.0 79 160-243 3-84 (306)
378 3ukm_A Potassium channel subfa 34.5 31 0.0011 35.0 4.2 55 618-672 92-148 (280)
379 2hsg_A Glucose-resistance amyl 34.2 65 0.0022 33.4 7.1 79 159-243 60-140 (332)
380 1dbq_A Purine repressor; trans 33.8 1E+02 0.0036 30.7 8.5 65 159-228 7-73 (289)
381 2b4l_A Glycine betaine-binding 33.5 68 0.0023 32.3 6.7 58 460-540 163-220 (268)
382 3gv0_A Transcriptional regulat 33.0 54 0.0018 33.1 6.0 82 156-243 5-90 (288)
383 2vpn_A Periplasmic substrate b 32.9 35 0.0012 35.4 4.6 88 677-772 130-218 (316)
384 1gud_A ALBP, D-allose-binding 32.9 78 0.0027 31.9 7.3 81 160-243 2-85 (288)
385 3rhg_A Putative phophotriester 32.9 3.1E+02 0.011 28.8 12.0 154 75-243 72-248 (365)
386 2pln_A HP1043, response regula 32.7 1.5E+02 0.005 25.4 8.3 65 160-241 19-83 (137)
387 3hcw_A Maltose operon transcri 32.2 3.4E+02 0.012 27.0 12.2 117 27-156 132-260 (295)
388 3clk_A Transcription regulator 32.2 42 0.0014 34.0 5.0 81 158-243 7-89 (290)
389 3mz1_A Putative transcriptiona 32.1 38 0.0013 34.1 4.7 72 713-786 214-287 (300)
390 4es6_A Uroporphyrinogen-III sy 31.7 32 0.0011 34.4 3.9 88 145-240 114-206 (254)
391 4gd5_A Phosphate ABC transport 31.7 1.9E+02 0.0064 29.0 9.9 49 522-570 74-122 (279)
392 2qip_A Protein of unknown func 31.5 2.2E+02 0.0074 26.0 9.4 95 148-243 36-134 (165)
393 1uuy_A CNX1, molybdopterin bio 31.3 63 0.0021 29.8 5.5 64 160-227 6-80 (167)
394 3hdv_A Response regulator; PSI 31.1 2.4E+02 0.0082 23.8 10.3 58 174-242 18-78 (136)
395 3pzy_A MOG; ssgcid, seattle st 30.3 89 0.003 28.7 6.3 62 160-226 8-74 (164)
396 1di6_A MOGA, molybdenum cofact 30.2 1.2E+02 0.0042 28.7 7.5 64 160-227 4-75 (195)
397 3sds_A Ornithine carbamoyltran 30.2 4.9E+02 0.017 27.1 14.8 132 27-194 67-219 (353)
398 3miz_A Putative transcriptiona 30.1 1.5E+02 0.0052 29.8 9.0 86 151-243 5-93 (301)
399 3o1i_D Periplasmic protein TOR 29.8 49 0.0017 33.6 5.1 80 160-243 6-88 (304)
400 3lua_A Response regulator rece 29.7 2.6E+02 0.0089 23.8 10.2 56 174-240 15-75 (140)
401 3bbl_A Regulatory protein of L 29.7 65 0.0022 32.4 6.0 78 160-243 5-88 (287)
402 3apt_A Methylenetetrahydrofola 29.5 4.7E+02 0.016 26.7 16.3 149 81-246 32-203 (310)
403 2csu_A 457AA long hypothetical 28.7 1.7E+02 0.0059 32.0 9.5 145 75-242 72-227 (457)
404 2pbq_A Molybdenum cofactor bio 28.7 1.4E+02 0.0049 27.7 7.6 63 160-227 6-77 (178)
405 3hhg_A Transcriptional regulat 28.7 38 0.0013 34.5 3.9 81 461-570 92-172 (306)
406 2qv7_A Diacylglycerol kinase D 28.5 3.1E+02 0.011 28.3 11.2 75 159-240 24-102 (337)
407 3jvd_A Transcriptional regulat 28.4 4.8E+02 0.017 26.5 13.0 119 25-156 173-299 (333)
408 3heb_A Response regulator rece 28.1 3E+02 0.01 23.9 11.9 70 174-254 15-97 (152)
409 1qpz_A PURA, protein (purine n 27.7 2E+02 0.0068 29.6 9.6 70 154-228 53-124 (340)
410 2lpm_A Two-component response 27.7 42 0.0014 29.2 3.4 67 164-243 12-80 (123)
411 3rf7_A Iron-containing alcohol 27.3 1E+02 0.0034 32.8 7.0 84 149-238 40-131 (375)
412 3eod_A Protein HNR; response r 26.8 1.6E+02 0.0054 24.8 7.3 69 159-242 7-77 (130)
413 2qxy_A Response regulator; reg 26.6 3E+02 0.01 23.4 9.4 58 174-242 15-73 (142)
414 3hp4_A GDSL-esterase; psychrot 26.6 2.1E+02 0.0073 26.0 8.7 69 160-231 3-79 (185)
415 3rvy_A ION transport protein; 26.6 42 0.0014 34.2 3.7 59 617-675 178-244 (285)
416 2i2x_B MTAC, methyltransferase 26.5 4E+02 0.014 26.3 11.1 85 159-254 123-212 (258)
417 2qh8_A Uncharacterized protein 26.2 2.3E+02 0.0078 28.6 9.5 114 25-155 139-255 (302)
418 1xrs_B D-lysine 5,6-aminomutas 26.2 3.3E+02 0.011 27.1 10.0 99 148-254 107-223 (262)
419 3hv2_A Response regulator/HD d 26.1 1.9E+02 0.0067 25.2 8.0 58 174-242 25-84 (153)
420 3c3m_A Response regulator rece 26.1 2.5E+02 0.0084 23.9 8.6 58 174-242 14-73 (138)
421 3umf_A Adenylate kinase; rossm 25.7 25 0.00086 34.3 1.7 31 91-121 30-60 (217)
422 4ecf_A ABC-type phosphate tran 25.5 99 0.0034 30.9 6.3 70 491-570 18-91 (264)
423 3nhm_A Response regulator; pro 25.4 2.3E+02 0.0078 23.8 8.2 69 174-254 15-85 (133)
424 3k2g_A Resiniferatoxin-binding 25.3 4.9E+02 0.017 27.3 11.9 157 76-243 84-257 (364)
425 3o1l_A Formyltetrahydrofolate 25.3 5.5E+02 0.019 26.1 15.3 98 92-195 24-140 (302)
426 2zay_A Response regulator rece 25.2 3.2E+02 0.011 23.4 9.9 56 174-240 19-76 (147)
427 3kn3_A Putative periplasmic pr 25.1 35 0.0012 33.8 2.6 74 488-570 18-94 (242)
428 3sr0_A Adenylate kinase; phosp 24.8 34 0.0012 33.0 2.5 30 92-121 2-31 (206)
429 3qbe_A 3-dehydroquinate syntha 24.8 2.2E+02 0.0075 30.0 9.0 110 134-254 23-138 (368)
430 3g85_A Transcriptional regulat 24.8 1.4E+02 0.0047 29.9 7.4 121 28-156 129-258 (289)
431 3cg4_A Response regulator rece 24.7 3.2E+02 0.011 23.1 12.6 57 174-241 18-76 (142)
432 3hzh_A Chemotaxis response reg 24.6 1.7E+02 0.0058 25.9 7.3 59 174-242 47-109 (157)
433 2j48_A Two-component sensor ki 24.4 2.1E+02 0.0071 23.2 7.5 58 174-242 12-71 (119)
434 3kto_A Response regulator rece 24.2 1.7E+02 0.0058 25.0 7.1 58 174-242 17-78 (136)
435 3qja_A IGPS, indole-3-glycerol 24.1 2E+02 0.0069 28.9 8.2 87 148-244 75-164 (272)
436 3iv7_A Alcohol dehydrogenase I 24.1 49 0.0017 35.1 3.8 95 148-255 26-122 (364)
437 3szu_A ISPH, 4-hydroxy-3-methy 23.9 75 0.0025 32.8 4.8 49 70-118 204-254 (328)
438 3hly_A Flavodoxin-like domain; 23.9 1.4E+02 0.0046 27.2 6.4 86 161-256 2-93 (161)
439 1xah_A Sadhqs, 3-dehydroquinat 23.5 1E+02 0.0035 32.5 6.2 97 150-255 24-126 (354)
440 5nul_A Flavodoxin; electron tr 23.5 1.7E+02 0.0059 25.3 6.9 82 162-257 1-91 (138)
441 1pii_A N-(5'phosphoribosyl)ant 23.4 1.4E+02 0.0047 32.6 7.2 86 148-244 71-159 (452)
442 3lft_A Uncharacterized protein 23.3 97 0.0033 31.3 5.9 65 160-227 3-71 (295)
443 3cs3_A Sugar-binding transcrip 23.2 4.2E+02 0.014 25.9 10.8 116 27-155 119-244 (277)
444 3hdg_A Uncharacterized protein 23.0 2.8E+02 0.0097 23.4 8.3 58 174-242 18-77 (137)
445 1usg_A Leucine-specific bindin 22.8 1.9E+02 0.0066 29.6 8.3 80 161-243 4-94 (346)
446 3fst_A 5,10-methylenetetrahydr 22.7 6.2E+02 0.021 25.7 16.1 164 65-246 24-206 (304)
447 2rjn_A Response regulator rece 22.7 3.1E+02 0.011 23.8 8.8 58 174-242 18-77 (154)
448 3zy2_A Putative GDP-fucose pro 22.4 2.9E+02 0.01 28.6 8.9 90 139-243 260-349 (362)
449 3rqi_A Response regulator prot 22.3 2.3E+02 0.0078 25.9 7.9 68 174-254 18-87 (184)
450 1vc4_A Indole-3-glycerol phosp 22.2 2.9E+02 0.0099 27.3 8.9 87 148-244 68-156 (254)
451 4i1d_A ABC transporter substra 22.2 6E+02 0.021 25.4 13.4 72 718-789 184-255 (324)
452 2qu7_A Putative transcriptiona 22.1 1.3E+02 0.0046 30.0 6.7 66 158-228 7-73 (288)
453 1byk_A Protein (trehalose oper 21.7 1.6E+02 0.0054 28.7 7.0 63 160-227 3-67 (255)
454 1zud_1 Adenylyltransferase THI 21.2 4.8E+02 0.016 25.5 10.4 86 147-242 40-143 (251)
455 1mb3_A Cell division response 21.0 2.8E+02 0.0096 22.8 7.7 57 174-241 12-70 (124)
456 2nx9_A Oxaloacetate decarboxyl 20.9 6E+02 0.02 27.7 11.7 89 150-240 105-198 (464)
457 2jwa_A Receptor tyrosine-prote 20.9 1.6E+02 0.0055 20.3 4.4 20 832-851 20-39 (44)
458 3h1g_A Chemotaxis protein CHEY 20.5 2.8E+02 0.0095 23.2 7.6 59 174-242 16-77 (129)
459 3lou_A Formyltetrahydrofolate 20.5 6.7E+02 0.023 25.3 13.2 98 92-195 12-130 (292)
460 2h0a_A TTHA0807, transcription 20.3 3.4E+02 0.012 26.5 9.3 118 26-155 114-245 (276)
461 3ctp_A Periplasmic binding pro 20.2 1.5E+02 0.0052 30.4 6.8 68 154-227 55-124 (330)
462 4f2g_A Otcase 1, ornithine car 20.2 7E+02 0.024 25.4 11.4 132 27-194 46-185 (309)
463 3r7f_A Aspartate carbamoyltran 20.1 6.8E+02 0.023 25.4 11.2 135 27-194 37-180 (304)
No 1
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=100.00 E-value=6.3e-99 Score=935.70 Aligned_cols=762 Identities=20% Similarity=0.334 Sum_probs=638.7
Q ss_pred ceEEEeEEeecCCCcchHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCC-ChHHHHHHHHHHHhcCcEEEEccCChhh
Q 002371 25 EVLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKF-NGFLSIMGALQFMETDTLAIVGPQSAVM 103 (930)
Q Consensus 25 ~~I~IG~~~~l~~~~G~~~~~a~~lAve~iN~~ggil~g~~l~l~~~D~~~-~~~~a~~~a~~li~~~v~aiiGp~~S~~ 103 (930)
++|+||+++|+++. ..+.|+++|+||||++| ++|++++.|+++ ++..|+.+++++++++|.|||||.+|+.
T Consensus 1 ~~ikIG~l~~~tg~---~~~~a~~lAveeiN~~~-----~~l~~~~~D~~~~~~~~a~~~~~~l~~~~V~aiiG~~~S~~ 72 (823)
T 3kg2_A 1 NSIQIGGLFPRGAD---QEYSAFRVGMVQFSTSE-----FRLTPHIDNLEVANSFAVTNAFCSQFSRGVYAIFGFYDKKS 72 (823)
T ss_dssp CEEEEEEEEETTCH---HHHHHHHHHHHHTCCSS-----CEEEEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCTTT
T ss_pred CcceEEEEeCCCCh---HHHHHHHHHHHHHhcCC-----eEEEEEEEEcCCCChHHHHHHHHHHHhcCcEEEEcCCChhH
Confidence 37999999999865 88999999999999987 799999999999 9999999999999999999999999999
Q ss_pred HHHHHHhhhcCCCcEEEeecCCCCCCCCCCCeEEEccCChHHHHHHHHHHHHHcCCcEEEEEEecCCcCcchHHHHHHHH
Q 002371 104 AHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKL 183 (930)
Q Consensus 104 ~~av~~~~~~~~vp~is~~a~~~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~~~w~~vaii~~d~~~g~~~~~~~~~~l 183 (930)
+.++++++++++||+|++ +.+.. ..+||+||+.|+ |+.+++++++++||++|++|| |++||....+.+.+++
T Consensus 73 ~~a~~~i~~~~~iP~is~--~~~~~--~~~~~~~r~~p~---~~~a~~~l~~~~gw~~v~ii~-d~~~g~~~~~~~~~~~ 144 (823)
T 3kg2_A 73 VNTITSFCGTLHVSFITP--SFPTD--GTHPFVIQMRPD---LKGALLSLIEYYQWDKFAYLY-DSDRGLSTLQAVLDSA 144 (823)
T ss_dssp HHHHHHHHHHTTCEEEEC--SCCCS--SCCSSEEECSCC---CHHHHHHHHHHTTCSEEEEEE-CGGGCTHHHHHHHHHH
T ss_pred HHHHHHHhhcCCCceeec--ccCCC--CCCceEEEeCCC---HHHHHHHHHHHCCCCEEEEEE-eCChhHHHHHHHHHHh
Confidence 999999999999999997 33322 467899999998 889999999999999999999 8889999999999999
Q ss_pred HhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchhhHHHHHHHHHHcCCCCCceEEEEeCcccccccCC
Q 002371 184 AEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFIDSK 263 (930)
Q Consensus 184 ~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~~~~~~~~~ 263 (930)
++.|++|++.+.++.+...++.|+..++++|+++++|+|+++++++++..++++|+++||+.++|+||.++......+.
T Consensus 145 ~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~~~~~~~~- 223 (823)
T 3kg2_A 145 AEKKWQVTAINVGNINNDKKDETYRSLFQDLELKKERRVILDCERDKVNDIVDQVITIGKHVKGYHYIIANLGFTDGDL- 223 (823)
T ss_dssp HHTTCEEEEEECSSCCSSSTTTTTTTHHHHTTTTTCCEEEEECCHHHHHHHHHHHHHHTTTBTTCEEEECSSBSSSSCC-
T ss_pred hccCCceEEEEeecCCCCccchhHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCcCCCCeEEEEecccccccch-
Confidence 9999999999887754223467899999999999999999999999999999999999999999999999854333222
Q ss_pred CCCchhhhhcccceEEEEEecCCChhhHHHHHHHHhhcCCC------CCCCchhhhHhhHHHHHHHHHHHhhhcCCccee
Q 002371 264 SPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTLSNGS------IGLNPYGLYAYDTVWMIARALKLFLDQGNTISF 337 (930)
Q Consensus 264 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~------~~~~~~~~~~YDav~~la~Al~~a~~~~~~~~~ 337 (930)
........|++++.++.+++|.+++|.++|+++|+.. ..++.+++++||||+++|+|+++++..+.+...
T Consensus 224 ----~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~~la~Al~~~~~~~~~~~~ 299 (823)
T 3kg2_A 224 ----LKIQFGGAEVSGFQIVDYDDSLVSKFIERWSTLEEKEYPGAHTATIKYTSALTYDAVQVMTEAFRNLRKQRIEISR 299 (823)
T ss_dssp ----SSSSSSBCEEEEEESSCTTSHHHHHHHHHHTTSCTTTSTTCCSSCCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCC
T ss_pred ----HHhhcCCCCceEeeeecCCchHHHHHHHHHHhhcccccCCCCccccchhhHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 1223445678899999999999999999999988632 236778999999999999999999875443221
Q ss_pred cCCCccCCCCCCcccCCCc--cccCchHHHHHHHHhccccCcceeEEEccCCCCCCCcEEEEEeeecCceeEEeEecCCC
Q 002371 338 SNDTKLNGLGGGTLNLGAL--SIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVIEHGYPQQIGYWSNYS 415 (930)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~l~~~~f~G~tG~v~fd~~g~~~~~~y~I~~~~~~~~~~~VG~w~~~~ 415 (930)
. +....|... ..+.+|++|+++|++++|+|++|+++||++|++....|+|++++++++ +.||+|++.+
T Consensus 300 ~---------~~~~~c~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~fd~~G~~~~~~~~I~~~~~~g~-~~vg~w~~~~ 369 (823)
T 3kg2_A 300 R---------GNAGDCLANPAVPWGQGVEIERALKQVQVEGLSGNIKFDQNGKRINYTINIMELKTNGP-RKIGYWSEVD 369 (823)
T ss_dssp S---------SCCCCTTCSSCCCCTHHHHHHHHHTTCCCEETTEECCBCSSSCBCSCEEEEEEECSSCE-EEEEEEETTT
T ss_pred C---------CCCCCccCCCCCcccchHHHHHHHHhcccCCcccCeEECCCCcccccEEEEEEEcCCCC-eeEEEEcCCC
Confidence 1 112233333 456789999999999999999999999999999889999999999998 9999999998
Q ss_pred CccccCCcccccCCCCCCCCCccceeeEeCCCcccCCCcccccCCCcceEEEecCcccccccEEee------cCcceEEE
Q 002371 416 GLSVVPPEKLYRKPANRSSSNQHLYSVVWPGGVTSKPRGWVFPNNGRQLRIGVPNRVSYRDFVFKV------NGTDIVHG 489 (930)
Q Consensus 416 gl~~~~~~~~~~~~~~~~~~~~~l~~i~Wpg~~~~~p~~~~~~~~g~~lrv~v~~~~~~~p~~~~~------~~~~~~~G 489 (930)
|+....+ .. ...+|++|+|++.. ++||.+.. ++++++.|
T Consensus 370 g~~~~~~------------------------------~~--~~~~~~~l~v~~~~---~~P~~~~~~~~~~~~~~~~~~G 414 (823)
T 3kg2_A 370 KMVLTED------------------------------DT--SGLEQKTVVVTTIL---ESPYVMMKANHAALAGNERYEG 414 (823)
T ss_dssp EEEECCC------------------------------CC--SSCCCCCEEEEECC---CTTTSEECTTGGGCCGGGGEES
T ss_pred CceeccC------------------------------cc--cccCCCEEEEEEec---CCCcEEEecCccccCCCCceEE
Confidence 8653210 00 12368999999975 56666652 24678999
Q ss_pred EeHHHHHHHHHHCCCcccEEEEeC---CC-CCCCCCHHHHHHHHHcCcccEEEecEEEecCccceeeecccccccceEEE
Q 002371 490 YCIDVFLAAVRLLPYAVPYKFIPY---GD-GHKNPTYSELINQITTGVFDAAVGDIAIVTNRTKAVDFTQPYIESGLVVV 565 (930)
Q Consensus 490 ~~~dll~~l~~~ln~~~~~~~~~~---~~-~~~n~~~~~l~~~l~~g~~D~~~~~~~~t~~R~~~vdfs~p~~~~~~~~~ 565 (930)
+|+||++++++++||+++++.++. |. ...||+|++++++|.+|++|++++++++|++|.+.+|||.||+.++++++
T Consensus 415 ~~~dl~~~~a~~l~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~l~~~~~D~~~~~~~~t~~R~~~~dfs~py~~~~~~~~ 494 (823)
T 3kg2_A 415 YCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIM 494 (823)
T ss_dssp HHHHHHHHHHHHHTCCEEEEECSSCCCCCBCTTTCCBCHHHHHHHTTSCSEECSCCBCCHHHHTTEEECSCSEEECEEEE
T ss_pred EHHHHHHHHHHHcCCcEEEEEccCCcccccCCCCCchhhHHHhhccccCcEEecceecchhheeeEEeccchhhCCEEEE
Confidence 999999999999999988777663 32 22578899999999999999999999999999999999999999999999
Q ss_pred EeccC-CCcCcceecccCchhHHHHHHHHHHHHHHhhhheeeccCCCCCCC--------------CcccchhhHHHHHHH
Q 002371 566 APVRK-LNSSAWAFLRPFTPLMWAVTGVFFLVVGTVVWILEHRLNDEFRGP--------------PRKQIVTVLWFSFST 630 (930)
Q Consensus 566 v~~~~-~~~~~~~~l~PF~~~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~ 630 (930)
+|++. ..++++.|++||++.+|++++++++++++++|+++|..+.+++.+ ...++.+++|+++++
T Consensus 495 v~~~~~~~~~~~~fl~Pf~~~vW~~i~~~~~~~~~~l~~~~~~~p~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 574 (823)
T 3kg2_A 495 IKKPQKSKPGVFSFLDPLAYEIWMCIVFAYIGVSVVLFLVSRFSPYEWHTEEFEDGRETQSSESTNEFGIFNSLWFSLGA 574 (823)
T ss_dssp EECCCCCCCCGGGTTTTSCHHHHHHHHHHHHHHHTTGGGTC-----------------------CHHHHHHHHHHHTTTT
T ss_pred EECCCcccccchHhhcCCchhHHHHHHHHHHHHHHHHHHHHhcChhhccCcccccccccccccccccccHHHHHHHHHHH
Confidence 99987 457899999999999999999999999999999999765443321 123477999999999
Q ss_pred hhccccC-CcccchhHHHHHHHHHHHHHhhhhhhhhhheeeeeccccCCCCChHHhhhCC-CeEEEEeCchhHHHHHHhc
Q 002371 631 MFFAHRE-NTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIDTLMTSN-DRVGYQVGSFAENYLIEEL 708 (930)
Q Consensus 631 l~~~~~~-~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~s~-~~i~~~~~s~~~~~l~~~~ 708 (930)
+++|+.. .|++.++|+++++|||++||++++|||+|+|+||++++.++|+|++||.+++ .++++..++....++.+..
T Consensus 575 l~~~g~~~~p~~~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~I~s~~dL~~~~~i~~~~~~~~~~~~~~~~~~ 654 (823)
T 3kg2_A 575 FMQQGADISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVERMVSPIESAEDLSKQTEIAYGTLDSGSTKEFFRRSK 654 (823)
T ss_dssp SCC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSHHHHHCCSSEEECBSSSHHHHHHHHCC
T ss_pred HHhcCCCcCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCHHHHhhCCCeeEEEEeCCcHHHHHHhcc
Confidence 9988755 7999999999999999999999999999999999999999999999999864 4677777777778875421
Q ss_pred CCCc-c----------ceEeCCCHHHHHHHHH-cCCcEEEEccchhhHHHHhcC-cceEEeCCccccCccEEEecCCCcc
Q 002371 709 SIPK-S----------RLVALGSPEEYAIALE-NRTVAAVVDERPYIDLFLSDH-CQFSVRGQEFTKSGWGFAFPRDSPL 775 (930)
Q Consensus 709 ~~~~-~----------~~~~~~~~~~~~~~l~-~g~~~a~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~k~spl 775 (930)
... . ..+.+++.++++++++ +++.+|++.+.+.++|+.+++ |+++.+++.+...++++++||||||
T Consensus 655 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~y~~~~~~c~l~~v~~~~~~~~~~~~~~k~spl 733 (823)
T 3kg2_A 655 -IAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSL 733 (823)
T ss_dssp -CHHHHHHHHHHHHCSSCCCBSSHHHHHHHHHTTTTSEEEEEEHHHHHHHHTSTTCCEEEESCCSSCEEECCEEETTCSS
T ss_pred -chHHHHHHHHHHhcCCccccCCHHHHHHHHhccCCceEEEechHHHHHHHhcCCCceEEccccccccceeEeecCCChH
Confidence 111 0 1123568999999998 577789999999999988775 9999999999999999999999999
Q ss_pred hhHHHHHHHhccccccHHHHHHhhcc-cCCCCCCCCC--CCCCcccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 002371 776 AIDMSTAILTLSENGELQRIHDKWLR-KKACSSESSQ--SDSEQLQIQSFRGLFLICGIACFLALLAYFCLMLRQFKKYS 852 (930)
Q Consensus 776 ~~~~n~~i~~l~e~G~~~~~~~~~~~-~~~~~~~~~~--~~~~~l~l~~~~g~f~il~~g~~lallvf~~e~~~~~~~~~ 852 (930)
++.||.+|+++.|+|++++|.++|+. ...|...... ....+|+++++.|+|+++++|+++|+++|++|++|++++++
T Consensus 734 ~~~~~~~il~l~e~G~~~~~~~~w~~~~~~c~~~~~~~~~~~~~L~l~~l~g~f~il~~g~~la~~vf~~E~~~~~~~~~ 813 (823)
T 3kg2_A 734 GTPVNLAVLKLSEQGLLDKLKNKWWYDKGECGAKDSGSKEKTSALSLSNVAGVFYILVGGLGLAMLVALIEFCYKSRAEA 813 (823)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHTTSCSCSSTTTSTTTCCCSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHhCCcHHHHHHhhCcCCCCCCCCCccccccCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHcchhh
Confidence 99999999999999999999999996 7788876432 35679999999999999999999999999999999877665
Q ss_pred c
Q 002371 853 A 853 (930)
Q Consensus 853 ~ 853 (930)
+
T Consensus 814 ~ 814 (823)
T 3kg2_A 814 K 814 (823)
T ss_dssp -
T ss_pred h
Confidence 4
No 2
>3o21_A Glutamate receptor 3; periplasmatic binding protein, oligomerization, membrane, TR protein; HET: NAG; 2.20A {Rattus norvegicus} PDB: 3p3w_A
Probab=100.00 E-value=2.4e-52 Score=469.47 Aligned_cols=368 Identities=17% Similarity=0.261 Sum_probs=318.2
Q ss_pred CceEEEeEEeecCCCcchHHHHHHHHHHHHHhcCCCC-CCCcEEEEEEecCCC-ChHHHHHHHHHHHhcCcEEEEccCCh
Q 002371 24 PEVLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRV-LGGRKLSITMHDAKF-NGFLSIMGALQFMETDTLAIVGPQSA 101 (930)
Q Consensus 24 ~~~I~IG~~~~l~~~~G~~~~~a~~lAve~iN~~ggi-l~g~~l~l~~~D~~~-~~~~a~~~a~~li~~~v~aiiGp~~S 101 (930)
+++|+||+++|+++. ..+.|+++|+||||++||+ |+|++|+++++|++| ++..|+.++++|++++|.+||||.+|
T Consensus 3 ~~~i~IG~i~~~sg~---~~~~a~~lAv~eiN~~g~ill~g~~l~~~~~D~~~~d~~~a~~~a~~li~~~V~aiiG~~~S 79 (389)
T 3o21_A 3 PNTISIGGLFMRNTV---QEHSAFRFAVQLYNTNQNTTEKPFHLNYHVDHLDSSNSFSVTNAFCSQFSRGVYAIFGFYDQ 79 (389)
T ss_dssp CSEEEEEEEECTTCH---HHHHHHHHHHHHHHSCCCTTTCSSEEEEEEEECCTTCHHHHHHHHHHHHTTTCSCEEECCCT
T ss_pred CceeEEEEEeCCCCH---HHHHHHHHHHHHHhcCccccCCCcEEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEeCCCh
Confidence 579999999999865 8899999999999999999 689999999999998 99999999999999999999999999
Q ss_pred hhHHHHHHhhhcCCCcEEEeecCCCCCCCCCCCeEEEccCChHHHHHHHHHHHHHcCCcEEEEEEecCCcCcchHHHHHH
Q 002371 102 VMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGD 181 (930)
Q Consensus 102 ~~~~av~~~~~~~~vp~is~~a~~~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~~~w~~vaii~~d~~~g~~~~~~~~~ 181 (930)
+.+.+++++++.++||+|+++. |.++ ..+|.||+.|+ |+.+++++++++||++|++|| |++||....+.|.+
T Consensus 80 ~~~~a~~~i~~~~~iP~Is~s~--~~~~--~~~~~~~~~p~---~~~a~~~~~~~~gw~~vaii~-d~~~g~~~~~~~~~ 151 (389)
T 3o21_A 80 MSMNTLTSFCGALHTSFVTPSF--PTDA--DVQFVIQMRPA---LKGAILSLLSYYKWEKFVYLY-DTERGFSVLQAIME 151 (389)
T ss_dssp TTHHHHHHHHHHHTCCEEECSC--CCSS--CCSSEEECSCC---SHHHHHHHHHHHTCCEEEEEE-CSTTCSHHHHHHHH
T ss_pred hHHHHHHHHhccCCCceeecCC--CCcc--CCceEEEEccC---HHHHHHHHHHhCCCCEEEEEE-cCcHHHHHHHHHHH
Confidence 9999999999999999998754 4443 34567777776 899999999999999999999 88999999999999
Q ss_pred HHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchhhHHHHHHHHHHcCCCCCceEEEEeCccccccc
Q 002371 182 KLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFID 261 (930)
Q Consensus 182 ~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~~~~~~~ 261 (930)
++++.|+||+..+.++.. .+.|++++|++|++++||+||++++..++..+++|++++||+.++|+||.++.+....+
T Consensus 152 ~~~~~g~~v~~~~~~~~~---~~~d~~~~l~~ik~~~~~vii~~~~~~~~~~i~~qa~~~g~~~~~~~~i~~~~~~~~~~ 228 (389)
T 3o21_A 152 AAVQNNWQVTARSVGNIK---DVQEFRRIIEEMDRRQEKRYLIDCEVERINTILEQVVILGKHSRGYHYMLANLGFTDIL 228 (389)
T ss_dssp HHHHTTCEEEEEECTTCC---CTHHHHHHHHHHHTTTCCEEEEESCHHHHHHHHHHHHHHCSCSTTCEEEECCTTGGGCC
T ss_pred HhhcCCCeEEEEEecCCC---CcHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCcccCCeEEEEccCCccccc
Confidence 999999999998877643 25699999999999999999999999999999999999999999999999885544333
Q ss_pred CCCCCchhhhhcccceEEEEEecCCChhhHHHHHHHHhhcCCC------CCCCchhhhHhhHHHHHHHHHHHhhhcCCcc
Q 002371 262 SKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTLSNGS------IGLNPYGLYAYDTVWMIARALKLFLDQGNTI 335 (930)
Q Consensus 262 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~------~~~~~~~~~~YDav~~la~Al~~a~~~~~~~ 335 (930)
. ........|++++..+.+++|.+++|.++|+++|+.. ..++.+++++|||++++++|++++...+...
T Consensus 229 ~-----~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~~~a~Al~~~~~~~~~~ 303 (389)
T 3o21_A 229 L-----ERVMHGGANITGFQIVNNENPMVQQFIQRWVRLDEREFPEAKNAPLKYTSALTHDAILVIAEAFRYLRRQRVDV 303 (389)
T ss_dssp C-----HHHHHTTCEEEEEESCCTTCHHHHHHHHHHTTSCTTTSTTSSSSCCCHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred H-----HHHhcCCcceEEEEEecCCChhHHHHHHHHHhccccccCCCCCCccchhHHHHHHHHHHHHHHHHHHHhhCccc
Confidence 2 2334556789999888999999999999999988632 1357789999999999999999997654332
Q ss_pred eecCCCccCCCCCCcccC--CCccccCchHHHHHHHHhccccCcceeEEEccCCCCCCCcEEEEEeeecCceeEEeEecC
Q 002371 336 SFSNDTKLNGLGGGTLNL--GALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVIEHGYPQQIGYWSN 413 (930)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~l~~~~f~G~tG~v~fd~~g~~~~~~y~I~~~~~~~~~~~VG~w~~ 413 (930)
.+. +....| +...+|.+|.+|+++|++++|+|++|+++||++|++....|+|+++.++|+ +.||+|++
T Consensus 304 ~~~---------~~~~~~~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~Fd~~G~~~~~~~~i~~~~~~g~-~~VG~w~~ 373 (389)
T 3o21_A 304 SRR---------GSAGDCLANPAVPWSQGIDIERALKMVQVQGMTGNIQFDTYGRRTNYTIDVYEMKVSGS-RKAGYWNE 373 (389)
T ss_dssp C--------------CCSCSSSCCCTTTTHHHHHHHHTCCEEETTEEECBCTTSBBCSCCEEEEEEETTEE-EEEEEEET
T ss_pred ccC---------CCCCcCCCCCCCCCCCcHHHHHHHHhCcccccceeeeeCCCCCcccceEEEEEEcCCCc-eeeeEEcC
Confidence 111 111233 344668889999999999999999999999999999888999999999888 99999999
Q ss_pred CCCcccc
Q 002371 414 YSGLSVV 420 (930)
Q Consensus 414 ~~gl~~~ 420 (930)
.+||++.
T Consensus 374 ~~g~~~~ 380 (389)
T 3o21_A 374 YERFVPF 380 (389)
T ss_dssp TTEEECC
T ss_pred CCCcccc
Confidence 9998754
No 3
>3om0_A Glutamate receptor, ionotropic kainate 5; membrane protein, ION channel; HET: NAG BMA GOL; 1.40A {Rattus norvegicus} PDB: 3om1_A* 3qlu_A* 3qlv_A
Probab=100.00 E-value=8.1e-51 Score=459.00 Aligned_cols=369 Identities=19% Similarity=0.273 Sum_probs=311.7
Q ss_pred ceEEEeEEeecCCCcchHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChH-HHHHHHHHHHhcCcEEEEccCChhh
Q 002371 25 EVLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGF-LSIMGALQFMETDTLAIVGPQSAVM 103 (930)
Q Consensus 25 ~~I~IG~~~~l~~~~G~~~~~a~~lAve~iN~~ggil~g~~l~l~~~D~~~~~~-~a~~~a~~li~~~v~aiiGp~~S~~ 103 (930)
++||||+++|+++.+|+..+.|+++|+|+||++||+|+|++|+++++|+++++. .+..+++++++++|.+||||.+|+.
T Consensus 3 ~~ikIG~~~~~s~~~G~~~~~a~~lAv~eiN~~ggil~g~~l~~~~~D~~~~~~~~~~~~~~~l~~~~V~aiiG~~~S~~ 82 (393)
T 3om0_A 3 SSLRMAAILDDQTVCGRGERLALALAREQINGIIEVPAKARVEVDIFELQRDSQYETTDTMCQILPKGVVSVLGPSSSPA 82 (393)
T ss_dssp CEEEEEEEECCCCSSCCCHHHHHHHHHHHHHHSCCSSCCCEEEEEEEECCSSCHHHHHHHHHHHGGGCCSCEECCSSCHH
T ss_pred cceeEEEEecCCCcccHHHHHHHHHHHHHHhcCcccccCcEEEEEEEecCCCchhHHHHHHHHHHhcCcEEEECCCCchh
Confidence 479999999999999999999999999999999999989999999999999764 5668889998889999999999954
Q ss_pred -HHHHHHhhhcCCCcEEEeecCCCCCCC-CCCCeE--EEccCChHHHHHHHHHHHHHcCCcEEEEEEecCCcCcchHHHH
Q 002371 104 -AHVLSHLANELQVPLLSFTALDPTLSP-LQYPFF--VQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTAL 179 (930)
Q Consensus 104 -~~av~~~~~~~~vp~is~~a~~~~ls~-~~~~~~--fr~~p~~~~~~~ai~~~l~~~~w~~vaii~~d~~~g~~~~~~~ 179 (930)
+.+++++++++++|+|++++++ ++ .++||+ ||+.|++..|+.+++++++++||++|++||+|++||+...+.+
T Consensus 83 ~~~a~~~i~~~~~ip~is~~a~~---~~~~~~~~~~~fr~~p~~~~~~~~~~~~~~~~g~~~vaii~~~~~~g~~l~~~~ 159 (393)
T 3om0_A 83 SASTVSHICGEKEIPHIKVGPEE---TPRLQYLRFASVSLYPSNEDVSLAVSRILKSFNYPSASLICAKAECLLRLEELV 159 (393)
T ss_dssp HHHHHHHHHHHHTCCEEECSCCC---CC----CCSCCEESSCCHHHHHHHHHHHHHHTTSCCEEEEESSTTHHHHTHHHH
T ss_pred HHHHHHHHHhccCCCeEeccCCc---CccccccccceEEecCCHHHHHHHHHHHHHhCCCcEEEEEEeCchHHHHHHHHH
Confidence 5799999999999999998764 23 568998 9999999999999999999999999999999999999877666
Q ss_pred HHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchhhHHHHHHHHHHcCCCCCceEEEEeCccccc
Q 002371 180 GDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTF 259 (930)
Q Consensus 180 ~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~~~~~ 259 (930)
+.+.+.|++|+... ++ + ..|++.++++|++++||+|++++++.++..+++|++++||+.++|+|+.+++....
T Consensus 160 -~~~~~~g~~v~~~~-~~-~----~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~~~~~ 232 (393)
T 3om0_A 160 -RGFLISKETLSVRM-LD-D----SRDPTPLLKEIRDDKVSTIIIDANASISHLVLRKASELGMTSAFYKYILTTMDFPI 232 (393)
T ss_dssp -HHHHHSSSCEEEEE-CC------CCCSHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHHTTTTSTTCEEEECCTTGGG
T ss_pred -HhhhccCCeEEEEe-cC-C----CCCHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCcccCCeEEEEecccccc
Confidence 45677899998654 43 4 56899999999999999999999999999999999999999889999999875544
Q ss_pred ccCCCCCchhhhhcccceEEEEEecCCChhhHHHHHHHHhhcCCC------CCCCchhhhHhhHHHHHHHHHHHhhhcCC
Q 002371 260 IDSKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTLSNGS------IGLNPYGLYAYDTVWMIARALKLFLDQGN 333 (930)
Q Consensus 260 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~------~~~~~~~~~~YDav~~la~Al~~a~~~~~ 333 (930)
.+.. .......|++++..+.++.|.+++|.++|+++|+.. ..|+.+++++|||++++++|++++.+...
T Consensus 233 ~~l~-----~~~~~~~~~~g~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~p~~~a~~~YDAv~~la~Al~~~~~~~~ 307 (393)
T 3om0_A 233 LHLD-----GIVEDSSNILGFSMFNTSHPFYPEFVRSLNMSWRENCEASTYPGPALSAALMFDAVHVVVSAVRELNRSQE 307 (393)
T ss_dssp CCCT-----TTCCSSCSEEEEECCCTTSTTHHHHHHHHHHHHTTTSCGGGCCSCCHHHHHHHHHHHHHHHHHHHHTTTSC
T ss_pred cchh-----hhhccCCcEEEEEEecCCccHHHHHHHHHHHHhhhhccCCCCCCCchHHHHHHhHHHHHHHHHHHHhhccc
Confidence 3321 123456789999888888999999999999888621 25778999999999999999999864321
Q ss_pred cceecCCCccCCCCCCcccCCCccccCchHHHHHHHHhccccCcceeEEEccCCCCCCCcEEEEEeeecCceeEEeEecC
Q 002371 334 TISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVIEHGYPQQIGYWSN 413 (930)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~f~G~tG~v~fd~~g~~~~~~y~I~~~~~~~~~~~VG~w~~ 413 (930)
.......|....+|.++.+|+++|++++|+|++|+++||++|++....|+|++++++++ +.||+|++
T Consensus 308 ------------~~~~~~~c~~~~~~~~g~~l~~~l~~~~f~G~tG~i~fd~~G~~~~~~~~i~~~~~~g~-~~VG~w~~ 374 (393)
T 3om0_A 308 ------------IGVKPLACTSANIWPHGTSLMNYLRMVEYDGLTGRVEFNSKGQRTNYTLRILEKSRQGH-REIGVWYS 374 (393)
T ss_dssp ------------CCCCCCCTTCCCCCTTHHHHHHHHTTCCEEETTEEECBCTTSCBCSCEEEEEEEETTEE-EEEEEEEC
T ss_pred ------------CcCCCcCCCCCCcccCchHHHHHHHhCCCCCccceEEeCCCCcccceeEEEEEeccCCc-eEeeeEcC
Confidence 11233456777788889999999999999999999999999998889999999998887 99999999
Q ss_pred CCCccccC
Q 002371 414 YSGLSVVP 421 (930)
Q Consensus 414 ~~gl~~~~ 421 (930)
..||++..
T Consensus 375 ~~gl~~~~ 382 (393)
T 3om0_A 375 NRTLAMNA 382 (393)
T ss_dssp C-------
T ss_pred CCCccccc
Confidence 99987653
No 4
>3h6g_A Glutamate receptor, ionotropic kainate 2; membrane protein glycoprotein, cell junction, cell membrane, glycoprotein, ION transport; HET: NAG TLA; 2.70A {Rattus norvegicus} PDB: 3h6h_A* 3qlv_C 3qlu_C* 3qlt_A* 3olz_A*
Probab=100.00 E-value=1.8e-50 Score=456.56 Aligned_cols=369 Identities=21% Similarity=0.334 Sum_probs=322.1
Q ss_pred CceEEEeEEeecC-CCcchHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCC-CChHHHHHHHHHHHhcCcEEEEccCCh
Q 002371 24 PEVLNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAK-FNGFLSIMGALQFMETDTLAIVGPQSA 101 (930)
Q Consensus 24 ~~~I~IG~~~~l~-~~~G~~~~~a~~lAve~iN~~ggil~g~~l~l~~~D~~-~~~~~a~~~a~~li~~~v~aiiGp~~S 101 (930)
+++|+||+++|++ +..|...+.|+++|+|+||++||+|+|++|++++.|+. .|+..+...+++|++++|.+||||.+|
T Consensus 2 ~~~i~IG~l~~~sg~~~g~~~~~a~~lAv~eiN~~ggil~~~~l~~~~~~~~~~d~~~~~~~a~~l~~~~V~aiiG~~~S 81 (395)
T 3h6g_A 2 THVLRFGGIFEYVESGPMGAEELAFRFAVNTINRNRTLLPNTTLTYDTQKINLYDSFEASKKACDQLSLGVAAIFGPSHS 81 (395)
T ss_dssp CEEEEEEEEEEESSSCSCCHHHHHHHHHHHHHHHCSSSSSSEEEEEEEEEEETTCHHHHHHHHHHHHHHCCSCEECCSSH
T ss_pred CcceEEEEEecCCCcccchHHHHHHHHHHHHHhcCccccCCceEEEEEeecCCcChHHHHHHHHHhhhcCcEEEECCCCh
Confidence 5789999999997 46789999999999999999999998889999999987 599999999999999999999999999
Q ss_pred hhHHHHHHhhhcCCCcEEEeecCCCCCCCCCCCeEEEccCChHHHHHHHHHHHHHcCCcEEEEEEecCCcCcchHHHHHH
Q 002371 102 VMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGD 181 (930)
Q Consensus 102 ~~~~av~~~~~~~~vp~is~~a~~~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~~~w~~vaii~~d~~~g~~~~~~~~~ 181 (930)
+.+.++++++++++||+|+++++++.+++. .+|+||+.|++..|+.+++++++++||++|++|| |++||+...+.+.+
T Consensus 82 ~~~~a~~~~~~~~~ip~is~~~~~~~l~~~-~~~~~r~~~~~~~~~~~~~~~~~~~g~~~v~ii~-d~~~g~~~~~~~~~ 159 (395)
T 3h6g_A 82 SSANAVQSICNALGVPHIQTRWKHQVSDNK-DSFYVSLYPDFSSLSRAILDLVQFFKWKTVTVVY-DDSTGLIRLQELIK 159 (395)
T ss_dssp HHHHHHHHHHHHTTCCEEECSCCCCCTTCC-CCSEEEEEECHHHHHHHHHHHHHHTTCSEEEEEE-SSTHHHHHTHHHHT
T ss_pred hHHHHHHHHHhcCCCCeEeeccCccccccc-CceEEEecCCHHHHHHHHHHHHHHCCCeEEEEEE-EChhHHHHHHHHHH
Confidence 999999999999999999999999999763 6789999999999999999999999999999998 77899999999999
Q ss_pred HHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchhhHHHHHHHHHHcCCCCCceEEEEeCccccccc
Q 002371 182 KLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFID 261 (930)
Q Consensus 182 ~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~~~~~~~ 261 (930)
.+++.|++|+... ++.+ ..|++.++++|++++||+|++++++.++..+++|++++||+.+.|+|+.++......+
T Consensus 160 ~~~~~g~~v~~~~-~~~~----~~d~~~~l~~i~~~~~~vi~~~~~~~~~~~~~~qa~~~gl~~~~~~~i~~~~~~~~~~ 234 (395)
T 3h6g_A 160 APSRYNLRLKIRQ-LPAD----TKDAKPLLKEMKRGKEFHVIFDCSHEMAAGILKQALAMGMMTEYYHYIFTTLDLFALD 234 (395)
T ss_dssp GGGTSSCEEEEEE-CCSS----GGGGHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCSTTCEEEECCTTGGGBC
T ss_pred hhhcCCceEEEEE-eCCC----chhHHHHHHHHhhcCCeEEEEECCHHHHHHHHHHHHHccccCCceEEEEecCceeEec
Confidence 9999999999876 8766 7899999999999999999999999999999999999999999999999864332222
Q ss_pred CCCCCchhhhhcccc--eEEEEEecCCChhhHHHHHHHHhhcCCCC----------CCCchhhhHhhHHHHHHHHHHHhh
Q 002371 262 SKSPLSLKTAKSILG--ALTLRQHTPDSKRRRDFVSRWNTLSNGSI----------GLNPYGLYAYDTVWMIARALKLFL 329 (930)
Q Consensus 262 ~~~~~~~~~~~~~~g--~~~~~~~~~~~~~~~~f~~~~~~~~~~~~----------~~~~~~~~~YDav~~la~Al~~a~ 329 (930)
... . ...| +.++..+.++++..++|.++|++++.... .++.+++++|||++++++|++++.
T Consensus 235 ~~~-----~--~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~p~~~~~~~~~~~~~~aa~~YDav~~~a~Al~~a~ 307 (395)
T 3h6g_A 235 VEP-----Y--RYSGVNMTGFRILNTENTQVSSIIEKWSMERLQAPPKPDSGLLDGFMTTDAALMYDAVHVVSVAVQQFP 307 (395)
T ss_dssp CTT-----T--TTSCCEEEEEECSCTTSHHHHHHHHHHHHC------CCSSCBCTTCCCHHHHHHHHHHHHHHHHHHTCT
T ss_pred hHH-----h--ccCccceEEEEEecCCcHHHHHHHHHHHhcccccCcccCCCcCCCccchhHHHHHhHHHHHHHHHHhhh
Confidence 211 1 1234 57777788889999999999998764211 146699999999999999999975
Q ss_pred hcCCcceecCCCccCCCCCCcccCCCccccCchHHHHHHHHhccccCcceeEEEcc-CCCCCCCcEEEEEeeecCceeEE
Q 002371 330 DQGNTISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQ-DRSLLHPSYDIINVIEHGYPQQI 408 (930)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~f~G~tG~v~fd~-~g~~~~~~y~I~~~~~~~~~~~V 408 (930)
+.. ...++|...+.|.++.+|+++|++++|+|++|+++||+ +|++....|.|++++++++ +.|
T Consensus 308 ~~~---------------~~~~~c~~~~~~~~~~~l~~al~~~~~~G~tG~i~fd~~~G~~~~~~~~i~~~~~~~~-~~v 371 (395)
T 3h6g_A 308 QMT---------------VSSLQCNRHKPWRFGTRFMSLIKEAHWEGLTGRITFNKTNGLRTDFDLDVISLKEEGL-EKI 371 (395)
T ss_dssp TCC---------------CCCCCTTSCCCCTTHHHHHHHHHHCEEEETTEEEECCTTTSEECCCCEEEEEEETTEE-EEE
T ss_pred cCC---------------CcCCCCCCCCcCcccHHHHHHHhcCCCcCcceeeEecCCCCeecCCeEEEEEeccCCc-eEE
Confidence 421 22345677778888999999999999999999999998 9999888999999999998 999
Q ss_pred eEecCCCCccccCC
Q 002371 409 GYWSNYSGLSVVPP 422 (930)
Q Consensus 409 G~w~~~~gl~~~~~ 422 (930)
|+|++..|+++..+
T Consensus 372 G~w~~~~g~~~~~~ 385 (395)
T 3h6g_A 372 GTWDPASGLNMTES 385 (395)
T ss_dssp EEEETTTEECCCC-
T ss_pred EEEcCCCCccccCC
Confidence 99999999876543
No 5
>4f11_A Gamma-aminobutyric acid type B receptor subunit 2; venus flytrap module, G-protein coupled receptor, signaling; 2.38A {Homo sapiens} PDB: 4f12_A*
Probab=100.00 E-value=1.5e-50 Score=463.27 Aligned_cols=371 Identities=19% Similarity=0.277 Sum_probs=317.7
Q ss_pred CCCceEEEeEEeecCC-----CcchHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhc--CcEE
Q 002371 22 LKPEVLNVGAIFSFGT-----VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMET--DTLA 94 (930)
Q Consensus 22 ~~~~~I~IG~~~~l~~-----~~G~~~~~a~~lAve~iN~~ggil~g~~l~l~~~D~~~~~~~a~~~a~~li~~--~v~a 94 (930)
+.+++|+||+++|++. ..|...+.|+++|+|+||++ |+++|++|+++++|++|++..|+.++++|+++ +|.+
T Consensus 10 ~~~~~i~IG~~~plsG~~a~~~~g~~~~~~~~lAv~~iN~~-g~l~g~~l~l~~~D~~~~~~~a~~~a~~li~~~~~v~a 88 (433)
T 4f11_A 10 PSSPPLSIMGLMPLTKEVAKGSIGRGVLPAVELAIEQIRNE-SLLRPYFLDLRLYDTECDNAKGLKAFYDAIKYGPNHLM 88 (433)
T ss_dssp -CCCEEEEEEEECCCTTSTTHHHHHHHHHHHHHHHHHHHHT-TTTTTCEEEEEEEECTTCHHHHHHHHHHHHHHSCCCSE
T ss_pred CCCCceEEEEEEEecCCCCCCccchhHHHHHHHHHHHHhcc-CCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCCceEE
Confidence 5667999999999985 45888999999999999999 77789999999999999999999999999985 8999
Q ss_pred EEccCChhhHHHHHHhhhcCCCcEEEeecCCCCCCC-CCCCeEEEccCChHHHHHHHHHHHHHcCCcEEEEEEecCCcCc
Q 002371 95 IVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSP-LQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGR 173 (930)
Q Consensus 95 iiGp~~S~~~~av~~~~~~~~vp~is~~a~~~~ls~-~~~~~~fr~~p~~~~~~~ai~~~l~~~~w~~vaii~~d~~~g~ 173 (930)
||||.+|+.+.+++++++.+++|+|+++++++.+++ ..|||+||+.|++..++.+++++++++||++|++||+|++||+
T Consensus 89 viG~~~S~~~~a~~~~~~~~~ip~is~~~~~~~l~~~~~~~~~fr~~~~~~~~~~~~~~~~~~~g~~~v~ii~~~~~~g~ 168 (433)
T 4f11_A 89 VFGGVCPSVTSIIAESLQGWNLVQLSFAATTPVLADKKKYPYFFRTVPSDNAVNPAILKLLKHYQWKRVGTLTQDVQRFS 168 (433)
T ss_dssp EEECCSHHHHHHHHHTHHHHTCEEEESSCCCGGGGCTTTCTTEEESSCCGGGHHHHHHHHHHHTTCCEEEEEEESSHHHH
T ss_pred EECCCcchHHHHHHHHHHhcCceEEEcccCCccccccccCCceEEecCchHHHHHHHHHHHHHcCCcEEEEEEecchhhH
Confidence 999999999999999999999999999999999998 5799999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchhhHHHHHHHHHHcCCCCCceEEEEe
Q 002371 174 NGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIAT 253 (930)
Q Consensus 174 ~~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~~~~~~~~~a~~~g~~~~~~~~i~~ 253 (930)
...+.|++.+++.|++|+..+.++. |+..++++|+++++|+|++++.+.++..+++|++++||..++|+||++
T Consensus 169 ~~~~~~~~~~~~~g~~v~~~~~~~~-------d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~~i~~ 241 (433)
T 4f11_A 169 EVRNDLTGVLYGEDIEISDTESFSN-------DPCTSVKKLKGNDVRIILGQFDQNMAAKVFCCAYEENMYGSKYQWIIP 241 (433)
T ss_dssp HHHHHHHHHSSSSSCEEEEEEEESS-------CCHHHHHHHHHTTCCEEEEECCHHHHHHHHHHHHHTTCCSTTCEEEEE
T ss_pred HHHHHHHHHHHHcCceEEEEeccCc-------CHHHHHHHHhhCCCeEEEEeCcHHHHHHHHHHHHHcCCCCCCeEEEEc
Confidence 9999999999999999999888862 577899999999999999999999999999999999999888999999
Q ss_pred Cccccccc--------CCCCCchhhhhcccceEEEEEecCCC--------hhhHHHHHHHHhh-cCCCCCCCchhhhHhh
Q 002371 254 TWLSTFID--------SKSPLSLKTAKSILGALTLRQHTPDS--------KRRRDFVSRWNTL-SNGSIGLNPYGLYAYD 316 (930)
Q Consensus 254 ~~~~~~~~--------~~~~~~~~~~~~~~g~~~~~~~~~~~--------~~~~~f~~~~~~~-~~~~~~~~~~~~~~YD 316 (930)
++....+. ...+......++++|++++.++.+.. +..++|.++|+++ ++ ..|+.+++++||
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~f~~~y~~~~~~--~~~~~~a~~~YD 319 (433)
T 4f11_A 242 GWYEPSWWEQVHTEANSSRCLRKNLLAAMEGYIGVDFEPLSSKQIKTISGKTPQQYEREYNNKRSG--VGPSKFHGYAYD 319 (433)
T ss_dssp SCSCTTTTTCC------CCSCHHHHHHHHTTCEEEEECSSCCCCCCCTTSCCHHHHHHHHHHHHTT--SCCCTTHHHHHH
T ss_pred CcchHhHhcccccCCCCCCCCHHHHHHHHhCEEEEEEeecCCCCCcccCCCCHHHHHHHHHHhcCC--CCcccchhhHHH
Confidence 98443332 11122245668899999999876532 3478999999987 55 678899999999
Q ss_pred HHHHHHHHHHHhhhcCCcceecCCCccCCCCCCcccCCCccccCchHHHHHHHHhccccCcceeEEEccCCCCCCCcEEE
Q 002371 317 TVWMIARALKLFLDQGNTISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDI 396 (930)
Q Consensus 317 av~~la~Al~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~f~G~tG~v~fd~~g~~~~~~y~I 396 (930)
||+++|+|+++++....... ....+..-+...+.++.+|+++|++++|+|++|+++| ++|++. ..|.|
T Consensus 320 Av~~la~Al~~a~~~~~~~~----------~~~~l~~~~~~~~~~~~~l~~~l~~~~f~G~tG~v~f-~~Gd~~-~~~~I 387 (433)
T 4f11_A 320 GIWVIAKTLQRAMETLHASS----------RHQRIQDFNYTDHTLGRIILNAMNETNFFGVTGQVVF-RNGERM-GTIKF 387 (433)
T ss_dssp HHHHHHHHHHHHHHHHHHSS----------SCCCGGGCSSCCHHHHHHHHHHHHTCEEEETTEEEEE-ETTEEE-CEEEE
T ss_pred HHHHHHHHHHHHHHHHhccC----------CCCcccccccccHHHHHHHHHHHHhcEEEccceEEEE-ecCcee-eeEEE
Confidence 99999999999865311000 0000110111133458999999999999999999999 899974 89999
Q ss_pred EEeeecCceeEEeEecCCC
Q 002371 397 INVIEHGYPQQIGYWSNYS 415 (930)
Q Consensus 397 ~~~~~~~~~~~VG~w~~~~ 415 (930)
++++++++ +.||.|++..
T Consensus 388 ~~~~~g~~-~~VG~~~~~~ 405 (433)
T 4f11_A 388 TQFQDSRE-VKVGEYNAVA 405 (433)
T ss_dssp EEEETTEE-EEEEEEETTT
T ss_pred EEEECCce-EEEEEEECCC
Confidence 99998666 9999998643
No 6
>3hsy_A Glutamate receptor 2; ligand-gated ION channel, synapse, cell CELL membrane, endoplasmic reticulum, glycoprotein, ION TRA ionic channel; HET: NAG BMA; 1.75A {Rattus norvegicus} PDB: 3h5v_A* 3h5w_A 3o2j_A* 2wjw_A* 2wjx_A 3n6v_A
Probab=100.00 E-value=4.3e-50 Score=449.70 Aligned_cols=364 Identities=19% Similarity=0.306 Sum_probs=294.2
Q ss_pred ceEEEeEEeecCCCcchHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCC-ChHHHHHHHHHHHhcCcEEEEccCChhh
Q 002371 25 EVLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKF-NGFLSIMGALQFMETDTLAIVGPQSAVM 103 (930)
Q Consensus 25 ~~I~IG~~~~l~~~~G~~~~~a~~lAve~iN~~ggil~g~~l~l~~~D~~~-~~~~a~~~a~~li~~~v~aiiGp~~S~~ 103 (930)
.+|+||+++|+++ ...+.|+++|+||||++ |++|++++.|+++ |+..|++++++|++++|.+||||.+|+.
T Consensus 1 ~~i~IG~i~~~sg---~~~~~~~~lAv~~iN~~-----g~~l~~~~~d~~~~d~~~a~~~~~~li~~~V~aiiG~~~S~~ 72 (376)
T 3hsy_A 1 NSIQIGGLFPRGA---DQEYSAFRVGMVQFSTS-----EFRLTPHIDNLEVANSFAVTNAFCSQFSRGVYAIFGFYDKKS 72 (376)
T ss_dssp CEEEEEEEEETTC---HHHHHHHHHHHHHTCCS-----SCEEEEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCTTT
T ss_pred CceeEEEEeCCCC---HHHHHHHHHHHHHHhcC-----CeEEEEEEeecCCCChHHHHHHHHHHHhcCcEEEECCCchhH
Confidence 3699999999986 46799999999999998 6899999999765 9999999999999999999999999999
Q ss_pred HHHHHHhhhcCCCcEEEeecCCCCCCCCCCCeEEEccCChHHHHHHHHHHHHHcCCcEEEEEEecCCcCcchHHHHHHHH
Q 002371 104 AHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKL 183 (930)
Q Consensus 104 ~~av~~~~~~~~vp~is~~a~~~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~~~w~~vaii~~d~~~g~~~~~~~~~~l 183 (930)
+.++++++++++||+|+++++ . ....+|+||+.|+ |+.+++++++++||++|++|| |++||....+.|.+++
T Consensus 73 ~~av~~~~~~~~ip~is~~~~--~--~~~~~~~~~~~p~---~~~a~~~~~~~~gw~~vaii~-d~~~g~~~~~~~~~~~ 144 (376)
T 3hsy_A 73 VNTITSFCGTLHVSFITPSFP--T--DGTHPFVIQMRPD---LKGALLSLIEYYQWDKFAYLY-DSDRGLSTLQAVLDSA 144 (376)
T ss_dssp HHHHHHHHHHHTCEEEECSCC--C--CSCCTTEEECSCC---CHHHHHHHHHHTTCCEEEEEE-CSTTCSHHHHHHHHHH
T ss_pred HHHHHHHhccCcCceeecCCC--C--cccCCceEEeCcc---HHHHHHHHHHhcCCCEEEEEE-eCchhHHHHHHHHHHh
Confidence 999999999999999998763 2 3356899999887 899999999999999999999 8999999999999999
Q ss_pred HhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchhhHHHHHHHHHHcCCCCCceEEEEeCcccccccCC
Q 002371 184 AEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFIDSK 263 (930)
Q Consensus 184 ~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~~~~~~~~~ 263 (930)
++.|++|+..+.++......+.|++.+|++|++++||+|++++++.++..+++|++++||+.++|+||.+++.....+.
T Consensus 145 ~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~qa~~~g~~~~~~~~i~~~~~~~~~~~- 223 (376)
T 3hsy_A 145 AEKKWQVTAINVGNINNDKKDETYRSLFQDLELKKERRVILDCERDKVNDIVDQVITIGKHVKGYHYIIANLGFTDGDL- 223 (376)
T ss_dssp HHHTCEEEEEECTTCC--------------------CEEEEESCHHHHHHHHHHHHHHTSSGGGCEEEECSSBTTSTTG-
T ss_pred hhcCCeEEEEEeccccccccchhHHHHHHHHhhCCCeEEEEECCHHHHHHHHHHHHHcccCCCCcEEEEcCCCccccch-
Confidence 9999999988766532002368999999999999999999999999999999999999999889999999853222221
Q ss_pred CCCchhhhhcccceEEEEEecCCChhhHHHHHHHHhhcCCC------CCCCchhhhHhhHHHHHHHHHHHhhhcCCccee
Q 002371 264 SPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTLSNGS------IGLNPYGLYAYDTVWMIARALKLFLDQGNTISF 337 (930)
Q Consensus 264 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~------~~~~~~~~~~YDav~~la~Al~~a~~~~~~~~~ 337 (930)
........+++++.++.+++|..++|.++|+++|+.. ..|+.+++++|||++++++|++++.+.+.....
T Consensus 224 ----~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~aa~~YDav~~la~Ai~~~~~~~~~~~~ 299 (376)
T 3hsy_A 224 ----LKIQFGGANVSGFQIVDYDDSLVSKFIERWSTLEEKEYPGAHTATIKYTSALTYDAVQVMTEAFRNLRKQRIEISR 299 (376)
T ss_dssp ----GGSCCTTCEEEEEESCCTTSHHHHHHHHHHTTSCTTTSTTCSCSSCCHHHHHHHHHHHHHHHHHHHHHHTTCCCSC
T ss_pred ----HHhhcCCcCceEEEEecCCchHHHHHHHHHHhccccccCCCCCcccchhHHHHHHHHHHHHHHHHHHHhcCCcccc
Confidence 1112233457888888889999999999999998632 147889999999999999999999865433210
Q ss_pred cCCCccCCCCCCcccC--CCccccCchHHHHHHHHhccccCcceeEEEccCCCCCCCcEEEEEeeecCceeEEeEecCCC
Q 002371 338 SNDTKLNGLGGGTLNL--GALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVIEHGYPQQIGYWSNYS 415 (930)
Q Consensus 338 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~l~~~~f~G~tG~v~fd~~g~~~~~~y~I~~~~~~~~~~~VG~w~~~~ 415 (930)
.+....| ++..+|.+|.+|+++|++++|+|++|+++||++|++....|+|+++.++|+ +.||+|++.+
T Consensus 300 ---------~~~~~~~~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~fd~~G~~~~~~~~i~~~~~~g~-~~VG~w~~~~ 369 (376)
T 3hsy_A 300 ---------RGNAGDCLANPAVPWGQGVEIERALKQVQVEGLSGNIKFDQNGKRINYTINIMELKTNGP-RKIGYWSEVD 369 (376)
T ss_dssp ---------CCCCCCTTCSSCCCCHHHHHHHHHHHHCCEEETTEEECBCTTSBBCSCEEEEEEEETTEE-EEEEEEETTT
T ss_pred ---------CCCCCccCCCCCCCcCCcHHHHHHHHhcCcCCCccceeECCCCCCccceEEEEEecCCCc-eEEEEEcCCC
Confidence 1122234 455667789999999999999999999999999999899999999998888 9999999999
Q ss_pred Cccc
Q 002371 416 GLSV 419 (930)
Q Consensus 416 gl~~ 419 (930)
||+.
T Consensus 370 g~~~ 373 (376)
T 3hsy_A 370 KMVV 373 (376)
T ss_dssp EEEE
T ss_pred Ccee
Confidence 9874
No 7
>4gpa_A Glutamate receptor 4; PBP fold, ligand-gated ION channel, ION transport, transmembrane AMPA receptor regulating proteins, cornichons, ckamp44; HET: NAG; 2.25A {Rattus norvegicus}
Probab=100.00 E-value=5.2e-49 Score=444.11 Aligned_cols=374 Identities=15% Similarity=0.220 Sum_probs=318.3
Q ss_pred CCceEEEeEEeecCCCcchHHHHHHHHHHHHHhcCCCCCCCcEEEEEEe--cCC-CChHHHHHHHHHHHhcCcEEEEccC
Q 002371 23 KPEVLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMH--DAK-FNGFLSIMGALQFMETDTLAIVGPQ 99 (930)
Q Consensus 23 ~~~~I~IG~~~~l~~~~G~~~~~a~~lAve~iN~~ggil~g~~l~l~~~--D~~-~~~~~a~~~a~~li~~~v~aiiGp~ 99 (930)
-|++|+||+++|.++ .....|+++|+|+||+++++| |.+++|... |++ +++..+.+.++++++++|.|||||.
T Consensus 2 ~P~~I~IG~lf~~~~---~~~~~a~~~Av~~iN~~~~il-g~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~V~aiiG~~ 77 (389)
T 4gpa_A 2 FPSSVQIGGLFIRNT---DQEYTAFRLAIFLHNTSPNAS-EAPFNLVPHVDNIETANSFAVTNAFCSQYSRGVFAIFGLY 77 (389)
T ss_dssp CCSEEEEEEEECTTC---HHHHHHHHHHHHHHHTCSCTT-TCSSEEEEEEEECSSCCHHHHHHHHHHHHHTTCSEEEECC
T ss_pred CCCeEEEEEEEcCCC---hHHHHHHHHHHHHHHhCCCCC-CCCEEEEEEEecCCCchHHHHHHHHHHHHhcCCEEEEeCC
Confidence 468999999999874 577899999999999999998 555555444 433 4788899999999999999999999
Q ss_pred ChhhHHHHHHhhhcCCCcEEEeecCCCCCCCCCCCeEEEccCChHHHHHHHHHHHHHcCCcEEEEEEecCCcCcchHHHH
Q 002371 100 SAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTAL 179 (930)
Q Consensus 100 ~S~~~~av~~~~~~~~vp~is~~a~~~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~~~w~~vaii~~d~~~g~~~~~~~ 179 (930)
+|+.+.+++++++.++||+++++++.+.. .+|++++|+.+ +++++++++++||++|++||+++.++ ...+.+
T Consensus 78 ~S~~~~~v~~i~~~~~ip~is~~~~~~~~--~~~~~~~~~~~-----~~a~~~l~~~~~w~~vaii~~~d~~~-~~~~~~ 149 (389)
T 4gpa_A 78 DKRSVHTLTSFCSALHISLITPSFPTEGE--SQFVLQLRPSL-----RGALLSLLDHYEWNCFVFLYDTDRGY-SILQAI 149 (389)
T ss_dssp CTTTHHHHHHHHHHTTCEEEECSCCCSSC--CSSEEECSCCC-----HHHHHHHHHHTTCCEEEEEECSTTCS-HHHHHH
T ss_pred ccHHHHHHHHHHHHhCCCceecccccccc--ccCCccccCCH-----HHHHHHHHHHcCCcEEEEEEecchhh-HHHHHH
Confidence 99999999999999999999987665432 45666666543 46899999999999999999877765 456778
Q ss_pred HHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchhhHHHHHHHHHHcCCCCCceEEEEeCccccc
Q 002371 180 GDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTF 259 (930)
Q Consensus 180 ~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~~~~~ 259 (930)
.+.+++.|++|+..+.++.. ..|+..+|++++++++|+|++.++..++..++++|+++||+.++|+|+.++++...
T Consensus 150 ~~~~~~~g~~v~~~~~~~~~----~~d~~~~l~~i~~~~~~vIv~~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~ 225 (389)
T 4gpa_A 150 MEKAGQNGWHVSAICVENFN----DVSYRQLLEELDRRQEKKFVIDCEIERLQNILEQIVSVGKHVKGYHYIIANLGFKD 225 (389)
T ss_dssp HHHHHTTTCEEEEEECTTCC----HHHHHHHHHHHHHHTCCEEEEECCHHHHHHHHHHHHHHTCSBTTCEEEECSSBGGG
T ss_pred HHHHHhcCceEEEEeecCCc----chhHHHHHHHhhccCCcEEEEEechhHHHHHHHHHHHhCCCCCceEEEEeCccccc
Confidence 88999999999998888766 89999999999999999999999999999999999999999999999999887665
Q ss_pred ccCCCCCchhhhhcccceEEEEEecCCChhhHHHHHHHHhhcCC-----CCCCCchhhhHhhHHHHHHHHHHHhhhcCCc
Q 002371 260 IDSKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTLSNG-----SIGLNPYGLYAYDTVWMIARALKLFLDQGNT 334 (930)
Q Consensus 260 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~-----~~~~~~~~~~~YDav~~la~Al~~a~~~~~~ 334 (930)
... ........|+.++..+.+.++.+++|.++|++.+.. ...++.+++++||||+++|+|++++..+...
T Consensus 226 ~~~-----~~~~~~~~~i~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~a~~YDAV~~~A~Al~~~~~~~~~ 300 (389)
T 4gpa_A 226 ISL-----ERFIHGGANVTGFQLVDFNTPMVTKLMDRWKKLDQREYPGSETPPKYTSALTYDGVLVMAETFRSLRRQKID 300 (389)
T ss_dssp SCC-----HHHHHHBCEEEEEECSCTTSHHHHHHHHHHTTSCTTTSTTTTSCCCHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred hhh-----hhhhhcccceEEEEeecCCChHHHHHHHHHHHHhhhhcccCCCChhHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 544 456677788999999999999999999999987742 2467889999999999999999999876543
Q ss_pred ceecCCCccCCCCCCcccCCCccccCchHHHHHHHHhccccCcceeEEEccCCCCCCCcEEEEEeeecCceeEEeEecCC
Q 002371 335 ISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVIEHGYPQQIGYWSNY 414 (930)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~f~G~tG~v~fd~~g~~~~~~y~I~~~~~~~~~~~VG~w~~~ 414 (930)
.. .......+.|....+|.+|..|+++|++++|+|++|+|.||++|+|....|+|+|++++|+ ++||+|++.
T Consensus 301 ~~-------~~~~~~~~~~~~~~~~~~G~~l~~~l~~v~f~G~tG~v~Fd~~G~r~~~~~~I~~l~~~~~-~~VG~W~~~ 372 (389)
T 4gpa_A 301 IS-------RRGNAGDCLANPAAPWGQGIDMERTLKQVRIQGLTGNVQFDHYGRRVNYTMDVFELKSTGP-RKVGYWNDM 372 (389)
T ss_dssp CC-------CTTCCCCTTCSSCCCCTTHHHHHHHHHTCEEEETTEEEEBCTTSCBCSCEEEEEEEETTEE-EEEEEEETT
T ss_pred cc-------ccCCccccccCCCcccchHHHHHHHHHhCceecCceeEEECCCCCCCCCEEEEEEEECCEE-EEEEEEECC
Confidence 21 1223445666777889899999999999999999999999999999888999999999998 999999999
Q ss_pred CCccccCCccc
Q 002371 415 SGLSVVPPEKL 425 (930)
Q Consensus 415 ~gl~~~~~~~~ 425 (930)
+||.+..|+++
T Consensus 373 ~gl~~~~~~tk 383 (389)
T 4gpa_A 373 DKLVLIQDRTK 383 (389)
T ss_dssp TEEEECCC---
T ss_pred CCeEECCCCcc
Confidence 99998877553
No 8
>3saj_A Glutamate receptor 1; rossman fold, ION channel, membrane, transport protein; HET: NAG BMA MAN; 2.50A {Rattus norvegicus}
Probab=100.00 E-value=2.1e-49 Score=445.59 Aligned_cols=367 Identities=19% Similarity=0.254 Sum_probs=315.8
Q ss_pred CCCceEEEeEEeecCCCcchHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCC-ChHHHHHHHHHHHhcCcEEEEccCC
Q 002371 22 LKPEVLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKF-NGFLSIMGALQFMETDTLAIVGPQS 100 (930)
Q Consensus 22 ~~~~~I~IG~~~~l~~~~G~~~~~a~~lAve~iN~~ggil~g~~l~l~~~D~~~-~~~~a~~~a~~li~~~v~aiiGp~~ 100 (930)
..+++||||+++|+++. ..+.|+++|+|+||++| +|++++.|+++ ++..++.++++|++++|.+||||.+
T Consensus 6 ~~~~~ikIG~~~~~sg~---~~~~a~~lAv~~iN~~g------~l~~~~~D~~~~d~~~a~~~~~~l~~~~V~aiiG~~~ 76 (384)
T 3saj_A 6 AMPNNIQIGGLFPNQQS---QEHAAFRFALSQLTEPP------KLLPQIDIVNISDSFEMTYRFCSQFSKGVYAIFGFYE 76 (384)
T ss_dssp CCCSEEEEEEEESCSSS---HHHHHHHHHHTTCCSSS------EEEEEEEECCTTCHHHHHHHHHHHHHTTCSCEEECCC
T ss_pred CCCcceeEEEEecCCCH---HHHHHHHHHHHHHhcCC------ccceeeEecccCchhhHHHHHHHHHhcCeEEEECCCC
Confidence 46789999999999876 78999999999999885 99999999987 9999999999999999999999999
Q ss_pred hhhHHHHHHhhhcCCCcEEEeecCCCCCCCCCCCeEEEccCChHHHHHHHHHHHHHcCCcEEEEEEecCCcCcchHHHHH
Q 002371 101 AVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALG 180 (930)
Q Consensus 101 S~~~~av~~~~~~~~vp~is~~a~~~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~~~w~~vaii~~d~~~g~~~~~~~~ 180 (930)
|+.+.++++++++++||+|+++ +|.++ ..+|+||+.|+ |+.+++++++++||++|++|| |++||+...+.|.
T Consensus 77 S~~~~a~~~~~~~~~iP~is~~--~~~~~--~~~~~~~~~p~---~~~a~~~~~~~~g~~~v~ii~-d~~~g~~~~~~~~ 148 (384)
T 3saj_A 77 RRTVNMLTSFCGALHVCFITPS--FPVDT--SNQFVLQLRPE---LQEALISIIDHYKWQTFVYIY-DADRGLSVLQRVL 148 (384)
T ss_dssp HHHHHHHHHHHHHHTCCEEECS--CCCSS--CCTTEEECSCC---CHHHHHHHHHHTTCCEEEEEE-CSTTCSHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCeEecc--ccCcC--ccCceEEeccc---HHHHHHHHHHHCCCcEEEEEE-eCchhHHHHHHHH
Confidence 9999999999999999999984 45443 45678888887 899999999999999999999 7799999999999
Q ss_pred HHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchhhHHHHHHHHHHcCCCCCceEEEEeCcccccc
Q 002371 181 DKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFI 260 (930)
Q Consensus 181 ~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~~~~~~ 260 (930)
+.+++.|++|+..+.++.+ ..|+.++|.+|++++||+|++++++.++..+++|++++||+.++|+||.++......
T Consensus 149 ~~~~~~g~~v~~~~~~~~~----~~d~~~~l~~ik~~~~~vii~~~~~~~~~~~~~qa~~~g~~~~~~~~i~~~~~~~~~ 224 (384)
T 3saj_A 149 DTAAEKNWQVTAVNILTTT----EEGYRMLFQDLEKKKERLVVVDCESERLNAILGQIVKLEKNGIGYHYILANLGFMDI 224 (384)
T ss_dssp HHHHHHTCEEEEEEGGGCC----HHHHHHTTTTCCSCSEEEEEEECCGGGHHHHHHHHHHTCCTTCEEEEEESSSCGGGS
T ss_pred HHhhhcCceEEEEEeccCC----chhHHHHHHHHhccCCcEEEEEcCHHHHHHHHHHHHHcCCCCCCcEEEEECCCcccc
Confidence 9999999999998866555 889999999999999999999999999999999999999999999999998543322
Q ss_pred cCCCCCchhhhhcccceEEEEEecCCChhhHHHHHHHHhhcCCC------CCCCchhhhHhhHHHHHHHHHHHhhhcCCc
Q 002371 261 DSKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTLSNGS------IGLNPYGLYAYDTVWMIARALKLFLDQGNT 334 (930)
Q Consensus 261 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~------~~~~~~~~~~YDav~~la~Al~~a~~~~~~ 334 (930)
+. ........|++++.++.+++|..++|.++|+++|+.. ..++.+++++|||++++++|++++++.+.+
T Consensus 225 ~~-----~~~~~~~~~v~~~~~~~~~~~~~~~F~~~~~~~~~~~~p~~~~~~~~~~aa~~YDav~~~a~Al~~~~~~~~~ 299 (384)
T 3saj_A 225 DL-----NKFKESGANVTGFQLVNYTDTIPARIMQQWRTSDSRDHTRVDWKRPKYTSALTYDGVKVMAEAFQSLRRQRID 299 (384)
T ss_dssp CH-----HHHHHTTCCEEEEECCCTTSHHHHHHHHHHHHHHHHC------CCCCHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred cH-----HHhhCCCcceEEEEeecCCChHHHHHHHHHHhcCccccCCCCCCccchhHHHHHHHHHHHHHHHHHHHhhccc
Confidence 21 2334556779999999999999999999999988521 145778999999999999999999875433
Q ss_pred ceecCCCccCCCCCCcccCCCc--cccCchHHHHHHHHhccccCcceeEEEccCCCCCCCcEEEEEeeecCceeEEeEec
Q 002371 335 ISFSNDTKLNGLGGGTLNLGAL--SIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVIEHGYPQQIGYWS 412 (930)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~l~~~~f~G~tG~v~fd~~g~~~~~~y~I~~~~~~~~~~~VG~w~ 412 (930)
... .+....|... .+|.++.+|+++|++++|+|++|+++||++|++....|+|+++++++. +.||+|+
T Consensus 300 ~~~---------~~~~~~c~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~fd~~G~~~~~~~~i~~~~~~g~-~~VG~W~ 369 (384)
T 3saj_A 300 ISR---------RGNAGDCLANPAVPWGQGIDIQRALQQVRFEGLTGNVQFNEKGRRTNYTLHVIEMKHDGI-RKIGYWN 369 (384)
T ss_dssp CCC---------CCSCCCSCCBSCCCCTTHHHHHHHHHSCCEEETTEEECBCTTSBBCSCCEEEEEEETTEE-EEEEEEE
T ss_pred eec---------CCCCCCCCCCCCCCcCCcHHHHHHHHhCcCcccceeeEeCCCCCcccceEEEEEeccCCc-ceeEEEc
Confidence 211 1122244443 456789999999999999999999999999999899999999999998 9999999
Q ss_pred CCCCccccCCcc
Q 002371 413 NYSGLSVVPPEK 424 (930)
Q Consensus 413 ~~~gl~~~~~~~ 424 (930)
+..||++..++.
T Consensus 370 ~~~gl~~~~~~~ 381 (384)
T 3saj_A 370 EDDKFVPAALEV 381 (384)
T ss_dssp TTTEEEECCC--
T ss_pred CCCCccccCccc
Confidence 999988776544
No 9
>1jdp_A NPR-C, atrial natriuretic peptide clearance receptor; hormone-receptor complex, natriuretic peptide receptor, ALLO activation, signaling protein; HET: NDG NAG; 2.00A {Homo sapiens} SCOP: c.93.1.1 PDB: 1jdn_A* 1yk0_A* 1yk1_A*
Probab=100.00 E-value=1.7e-48 Score=447.18 Aligned_cols=363 Identities=16% Similarity=0.235 Sum_probs=304.5
Q ss_pred CCceEEEeEEeecCC---CcchHHHHHHHHHHHHHhcCCC----CCCCcEEEEEEecCCCChHHHHHHHHHHHh---c-C
Q 002371 23 KPEVLNVGAIFSFGT---VNGQVSRIAMKAAQDDINSDPR----VLGGRKLSITMHDAKFNGFLSIMGALQFME---T-D 91 (930)
Q Consensus 23 ~~~~I~IG~~~~l~~---~~G~~~~~a~~lAve~iN~~gg----il~g~~l~l~~~D~~~~~~~a~~~a~~li~---~-~ 91 (930)
.+++|+||+++|++. ..|.....|+++|+|+||++|| +|+|++|+++++|++|++. |+..+.+++. + +
T Consensus 6 ~~~~i~IG~~~p~sg~~~~~g~~~~~a~~~Av~eiN~~~~~~~~ll~g~~l~~~~~D~~~~~~-a~~~~~~~~~~~~~~~ 84 (441)
T 1jdp_A 6 PPQKIEVLVLLPQDDSYLFSLTRVRPAIEYALRSVEGNGTGRRLLPPGTRFQVAYEDSDCGNR-ALFSLVDRVAAARGAK 84 (441)
T ss_dssp CCCEEEEEEEECSSTTSTTCHHHHHHHHHHHHHHHCC-----CCSCTTCEEEEEEEECTTSTH-HHHHHHHHHHHTTTCC
T ss_pred CCCceEEEEEcCCCCCcccchhhhHHHHHHHHHHHHhCCCcccccCCCcEEEEEEecCCCchh-HHHHHHHHHHhhccCC
Confidence 457899999999974 4467788999999999999998 8899999999999999998 7766666542 3 8
Q ss_pred cEEEEccCChhhHHHHHHhhhcCCCcEEEeecCCCCCCC-C-CCCeEEEccCChHHHHHHHHHHHHHcCCcEEEEEEecC
Q 002371 92 TLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSP-L-QYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDD 169 (930)
Q Consensus 92 v~aiiGp~~S~~~~av~~~~~~~~vp~is~~a~~~~ls~-~-~~~~~fr~~p~~~~~~~ai~~~l~~~~w~~vaii~~d~ 169 (930)
|.+||||.+|..+.+++++++.+++|+|+++++++.+++ . +|||+||+.|++..|+.+++++++++||++|++|++|+
T Consensus 85 v~aiiG~~~S~~~~~v~~~~~~~~ip~is~~~~~~~ls~~~~~~~~~fr~~p~~~~~~~a~~~~~~~~~w~~v~ii~~d~ 164 (441)
T 1jdp_A 85 PDLILGPVCEYAAAPVARLASHWDLPMLSAGALAAGFQHKDSEYSHLTRVAPAYAKMGEMMLALFRHHHWSRAALVYSDD 164 (441)
T ss_dssp CSEEECCCSHHHHHHHHHHHHHHTCCEEESCCCSGGGGCTTTTTTTEEECSCCHHHHHHHHHHHHHHHTCCEEEEEEECC
T ss_pred ceEEECCCchhhHHHHHHHHhhcCCcEEcCCCCchhhccccccCCceEEecCcHHHHHHHHHHHHHhcCCcEEEEEEEcC
Confidence 999999999999999999999999999999999999998 4 79999999999999999999999999999999999999
Q ss_pred CcCcc---hHHHHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchhhHHHHHHHHHHcCCCCC
Q 002371 170 DQGRN---GVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDS 246 (930)
Q Consensus 170 ~~g~~---~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~~~~~~~~~a~~~g~~~~ 246 (930)
+||+. ..+.|++++++.|+||+..+.++.+ ..|+...+++|+ +++|||++++...++..++++++++||..+
T Consensus 165 ~~g~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~----~~d~~~~l~~i~-~~~~vii~~~~~~~~~~~~~~~~~~gl~~~ 239 (441)
T 1jdp_A 165 KLERNCYFTLEGVHEVFQEEGLHTSIYSFDETK----DLDLEDIVRNIQ-ASERVVIMCASSDTIRSIMLVAHRHGMTSG 239 (441)
T ss_dssp SSSCHHHHHHHHHHHHHHHHTCEEEEEEECTTS----CCCHHHHHHHHH-HHCSEEEEESCHHHHHHHHHHHHHTTCTTT
T ss_pred CcccchHHHHHHHHHHHHhcCcEEEEEEecCCc----ccCHHHHHHHhh-cCCcEEEEecCHHHHHHHHHHHHHcCCCCC
Confidence 99999 9999999999999999988777654 457999999999 999999999999999999999999999888
Q ss_pred ceEEEEeCcccc------cccCCCCCchhhhhcccceEEEEEecCCChhhHHHHHHHHhh-----cCCCCCCCchhhhHh
Q 002371 247 GYVWIATTWLST------FIDSKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTL-----SNGSIGLNPYGLYAY 315 (930)
Q Consensus 247 ~~~~i~~~~~~~------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~-----~~~~~~~~~~~~~~Y 315 (930)
.|+||++++... .+...............++.++..+.++.|.+++|.++|+++ |+....++.+++++|
T Consensus 240 ~~v~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~g~~~~~~~~p~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~Y 319 (441)
T 1jdp_A 240 DYAFFNIELFNSSSYGDGSWKRGDKHDFEAKQAYSSLQTVTLLRTVKPEFEKFSMEVKSSVEKQGLNMEDYVNMFVEGFH 319 (441)
T ss_dssp TCEEEEECSSCCCSTTTCTTCCSSTTHHHHHHHGGGEEEEEECCCCCHHHHHHHHHHHHHHHTTTCCCCSSCCHHHHHHH
T ss_pred CEEEEEEeccccccccCCCCccCCcccHHHHHHHHhheEEeecCCCCchHHHHHHHHHHHHhhCCCCccchhhhHHHHHH
Confidence 899999884321 111111111111234566667777778899999999999887 442223567889999
Q ss_pred hHHHHHHHHHHHhhhcCCcceecCCCccCCCCCCcccCCCccccCchHHHHHHHHhccccCcceeEEEccCCCCCCCcEE
Q 002371 316 DTVWMIARALKLFLDQGNTISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYD 395 (930)
Q Consensus 316 Dav~~la~Al~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~f~G~tG~v~fd~~g~~~~~~y~ 395 (930)
|||+++|+|++++...+.. +.++.+|+++|++++|+|++|++.||++|++ ...|+
T Consensus 320 dAv~~~A~Al~~~~~~~~~------------------------~~~~~~l~~~l~~~~f~g~~G~v~fd~~Gd~-~~~~~ 374 (441)
T 1jdp_A 320 DAILLYVLALHEVLRAGYS------------------------KKDGGKIIQQTWNRTFEGIAGQVSIDANGDR-YGDFS 374 (441)
T ss_dssp HHHHHHHHHHHHHHHTTCC------------------------TTCHHHHHHHHSSEEEEETTEEEEECTTSBB-CCEEE
T ss_pred HHHHHHHHHHHHHHHhCCC------------------------CCCHHHHHHHHhCCeeECCccceEECCCCCc-cccEE
Confidence 9999999999998653210 1258899999999999999999999999996 58999
Q ss_pred EEEeee--cCceeEEeEecCCCC
Q 002371 396 IINVIE--HGYPQQIGYWSNYSG 416 (930)
Q Consensus 396 I~~~~~--~~~~~~VG~w~~~~g 416 (930)
|++++. +|.++.||.|++.++
T Consensus 375 I~~~~~~~~g~~~~VG~~~~~~~ 397 (441)
T 1jdp_A 375 VIAMTDVEAGTQEVIGDYFGKEG 397 (441)
T ss_dssp EEEEEETTTTEEEEEEEEETTTT
T ss_pred EEecccCCCCceEEEEEEcCCCC
Confidence 999974 455599999998765
No 10
>1dp4_A Atrial natriuretic peptide receptor A; periplasmic binding protein fold, dimer, hormone/growth FACT receptor, lyase complex; HET: NAG; 2.00A {Rattus norvegicus} SCOP: c.93.1.1 PDB: 1t34_A* 3a3k_A*
Probab=100.00 E-value=6.1e-48 Score=442.04 Aligned_cols=360 Identities=15% Similarity=0.196 Sum_probs=306.7
Q ss_pred ceEEEeEEeecC---CCcchHHHH-HHHHHHHHHhcCCCCCCCcEEEEEEecC-----CCChHHHHHHHHHHHhc-CcEE
Q 002371 25 EVLNVGAIFSFG---TVNGQVSRI-AMKAAQDDINSDPRVLGGRKLSITMHDA-----KFNGFLSIMGALQFMET-DTLA 94 (930)
Q Consensus 25 ~~I~IG~~~~l~---~~~G~~~~~-a~~lAve~iN~~ggil~g~~l~l~~~D~-----~~~~~~a~~~a~~li~~-~v~a 94 (930)
++|+||+++|++ +..|..... |+++|+|+||++||+|+|++|+++++|+ +|++..++..+.+++.+ +|.+
T Consensus 1 g~i~IG~l~p~sg~~~~~g~~~~~~a~~~Av~~iN~~ggil~g~~l~~~~~D~~~~p~~c~~~~a~~~a~~~l~~~~v~a 80 (435)
T 1dp4_A 1 SDLTVAVVLPLTNTSYPWSWARVGPAVELALARVKARPDLLPGWTVRMVLGSSENAAGVCSDTAAPLAAVDLKWEHSPAV 80 (435)
T ss_dssp CEEEEEEEECSSCCCSTTCHHHHHHHHHHHHHHHHTCTTSSTTCEEEEEEEECBCTTSSBCTTHHHHHHHHHHHHHCCSE
T ss_pred CceEEEEEccCcCCCCceeHHHHHHHHHHHHHHHHhCCCCCCCceEEEEEecCcCcccccchhhHHHHHHHHHHhcCceE
Confidence 479999999997 356777777 9999999999999999999999999999 56667888888888754 9999
Q ss_pred EEccCChhhHHHHHHhhhcCCCcEEEeecCCCCCCC-CCCCeEEEccCChHHHHHHHHHHHHHcCCcEEEEE------Ee
Q 002371 95 IVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSP-LQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAI------FN 167 (930)
Q Consensus 95 iiGp~~S~~~~av~~~~~~~~vp~is~~a~~~~ls~-~~~~~~fr~~p~~~~~~~ai~~~l~~~~w~~vaii------~~ 167 (930)
||||.+|..+.+++++++.+++|+|+++++++.+++ .+|||+||+.|++..|+.+++++++++||++|++| +.
T Consensus 81 viG~~~S~~~~av~~~~~~~~ip~is~~~~~~~ls~~~~~~~~fr~~p~~~~~~~a~~~~l~~~~w~~v~ii~~~d~~~~ 160 (435)
T 1dp4_A 81 FLGPGCVYSAAPVGRFTAHWRVPLLTAGAPALGIGVKDEYALTTRTGPSHVKLGDFVTALHRRLGWEHQALVLYADRLGD 160 (435)
T ss_dssp EECCCSHHHHHHHHHHHHHHTCCEEESCCCCGGGGCTTTSTTEEECSCCHHHHHHHHHHHHHHHTCCSEEEEEEECCSSS
T ss_pred EECCCChHHHHHHHHHHHhcCCcEEcccccccccCcccccCeEEEecCcHHHHHHHHHHHHHHCCCcEEEEEEEccCCCC
Confidence 999999999999999999999999999999999998 56999999999999999999999999999999999 77
Q ss_pred cCCcCcchHHHHHHHHHh-cCcEEEEEEecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchhhHHHHHHHHHHcCCCCC
Q 002371 168 DDDQGRNGVTALGDKLAE-IRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDS 246 (930)
Q Consensus 168 d~~~g~~~~~~~~~~l~~-~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~~~~~~~~~a~~~g~~~~ 246 (930)
|++|| ...+.+.+++++ .|++|+..+.++.+ ..|+..++++|++ ++|||++++.+.++..++++++++||..+
T Consensus 161 ~~~~g-~~~~~~~~~~~~~~g~~v~~~~~~~~~----~~d~~~~l~~i~~-~~~viv~~~~~~~~~~~~~~a~~~g~~~~ 234 (435)
T 1dp4_A 161 DRPCF-FIVEGLYMRVRERLNITVNHQEFVEGD----PDHYPKLLRAVRR-KGRVIYICSSPDAFRNLMLLALNAGLTGE 234 (435)
T ss_dssp CCHHH-HHHHHHHHHHHHHHCCEEEEEEECTTC----GGGHHHHHHHHHH-HCSEEEEESCHHHHHHHHHHHHHTTCCTT
T ss_pred cchHH-HHHHHHHHHHHhhcCeEEEEEEEecCc----hhhHHHHHHHHHh-hCceEEEecChHHHHHHHHHHHHcCCCCC
Confidence 78888 566778888888 99999988876544 7889999999998 99999999999999999999999999877
Q ss_pred ceEEEEeCccccccc---------CC---CCCchhhhhcccceEEEEEecCCChhhHHHHHHHHhhcCC----C---CCC
Q 002371 247 GYVWIATTWLSTFID---------SK---SPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTLSNG----S---IGL 307 (930)
Q Consensus 247 ~~~~i~~~~~~~~~~---------~~---~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~----~---~~~ 307 (930)
+|+||.++++..... .. ....+...++++|++++.++.|+++..++|.++|+++++. . ..+
T Consensus 235 ~~~~i~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 314 (435)
T 1dp4_A 235 DYVFFHLDVFGQSLKSAQGLVPQKPWERGDGQDRSARQAFQAAKIITYKEPDNPEYLEFLKQLKLLADKKFNFTVEDGLK 314 (435)
T ss_dssp TCEEEEECTTCTTSCSSCTTSCBCTTCCSSSCHHHHHHHGGGEEEEEECCCCSHHHHHHHHHHHHHHHHHHCCCCCCSGG
T ss_pred CEEEEEEecccccccccccccccCCcccCCcchHHHHHHhheeEEEecCCCCChhHHHHHHHHHHHhcCCCCcccccchh
Confidence 799999987654321 00 0001344567899999888888899999999999877631 1 126
Q ss_pred CchhhhHhhHHHHHHHHHHHhhhcCCcceecCCCccCCCCCCcccCCCccccCchHHHHHHHHhccccCcceeEEEccCC
Q 002371 308 NPYGLYAYDTVWMIARALKLFLDQGNTISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQDR 387 (930)
Q Consensus 308 ~~~~~~~YDav~~la~Al~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~f~G~tG~v~fd~~g 387 (930)
+.+++++||||+++|+|++++...++. ..++.+|+++|++++|+|++|++.||++|
T Consensus 315 ~~~~~~~ydav~~~a~Al~~~~~~~~~------------------------~~~~~~l~~~l~~~~f~g~~G~v~fd~~g 370 (435)
T 1dp4_A 315 NIIPASFHDGLLLYVQAVTETLAQGGT------------------------VTDGENITQRMWNRSFQGVTGYLKIDRNG 370 (435)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHTTCC------------------------TTCHHHHHHTTTTEEEEETTEEEEECTTS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHcCCC------------------------CCCHHHHHHHHhCceeeccceeEEECCCC
Confidence 778999999999999999998654221 11488999999999999999999999999
Q ss_pred CCCCCcEEEEEee-ecCceeEEeEecCCC
Q 002371 388 SLLHPSYDIINVI-EHGYPQQIGYWSNYS 415 (930)
Q Consensus 388 ~~~~~~y~I~~~~-~~~~~~~VG~w~~~~ 415 (930)
++. ..|.|+++. .+|.++.||.|++..
T Consensus 371 ~~~-~~~~i~~~~~~~g~~~~vg~~~~~~ 398 (435)
T 1dp4_A 371 DRD-TDFSLWDMDPETGAFRVVLNYNGTS 398 (435)
T ss_dssp BBC-CCEEEEEECTTTCCEEEEEEECTTT
T ss_pred Ccc-ceeEEEEecCCCCcEEEEEEecCCC
Confidence 974 799999994 234359999998865
No 11
>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor, neuron, central nerve system, SI protein; HET: NAG GLU; 2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A* 2e4y_A*
Probab=100.00 E-value=3.8e-47 Score=447.26 Aligned_cols=389 Identities=21% Similarity=0.323 Sum_probs=322.6
Q ss_pred CCCceEEEeEEeecC-------------CCcchHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHH
Q 002371 22 LKPEVLNVGAIFSFG-------------TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFM 88 (930)
Q Consensus 22 ~~~~~I~IG~~~~l~-------------~~~G~~~~~a~~lAve~iN~~ggil~g~~l~l~~~D~~~~~~~a~~~a~~li 88 (930)
..+++|+||+++|++ +..|.....|+++|+|+||++||+|||++|+++++|+++++..|+.++.+++
T Consensus 10 ~~~g~i~IG~l~pl~g~~~~~~~C~~~~~~~g~~~~~a~~~AieeIN~~~~llpg~~L~~~i~D~~~~~~~a~~~a~~~l 89 (555)
T 2e4u_A 10 KIEGDLVLGGLFPINEKGTGTEECGRINEDRGIQRLEAMLFAIDEINKDNYLLPGVKLGVHILDTCSRDTYALEQSLEFV 89 (555)
T ss_dssp EECCSEEEEEEECCEEECCTTCSEEEECTTTTHHHHHHHHHHHHHHHHCTTSSTTCCEEEEEEECTTCHHHHHHHHHHHH
T ss_pred ecCCCEEEEEEEEeeECCCCCCccccccchhhhHHHHHHHHHHHHHhCCCCCCCCCeEEEEEEECCCChHHHHHHHHHHH
Confidence 456799999999996 3458888999999999999999999999999999999999999999999888
Q ss_pred h-------------------------cCcEEEEccCChhhHHHHHHhhhcCCCcEEEeecCCCCCCC-CCCCeEEEccCC
Q 002371 89 E-------------------------TDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSP-LQYPFFVQTAPN 142 (930)
Q Consensus 89 ~-------------------------~~v~aiiGp~~S~~~~av~~~~~~~~vp~is~~a~~~~ls~-~~~~~~fr~~p~ 142 (930)
+ ++|++||||.+|+.+.+++++++.+++|+|+++++++.|++ .+||||||+.|+
T Consensus 90 ~~~~~~~~~~ny~C~~~~~~~~~~~~~~v~aviG~~~S~~s~~va~~~~~~~iP~Is~~a~~~~lsd~~~~p~~fr~~p~ 169 (555)
T 2e4u_A 90 RASLTKVDEAEYMCPDGSYAIQENIPLLIAGVIGGSYSSVSIQVANLLRLFQIPQISYASTSAKLSDKSRYDYFARTVPP 169 (555)
T ss_dssp HTTC--------------------CCCCEEEEEECSSHHHHHHHHHHHGGGTCCEEESSCCCGGGGCTTTCTTEEESSCC
T ss_pred hCcCcccCCCCcccCCCccccccccCCceEEEECCCCcHHHHHHHHHHhCcCCceEeCCcCCCccCCcccCCCceeeCCC
Confidence 4 48999999999999999999999999999999999999998 679999999999
Q ss_pred hHHHHHHHHHHHHHcCCcEEEEEEecCCcCcchHHHHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhc-CCceE
Q 002371 143 DLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRM-MEARV 221 (930)
Q Consensus 143 ~~~~~~ai~~~l~~~~w~~vaii~~d~~~g~~~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~-~~~~v 221 (930)
|..|+.+++++++++||++|++|++|++||+...+.|++++++.|++|++.+.++.. ....|+..++.++++ +++||
T Consensus 170 d~~~~~a~~~ll~~fgw~~V~ii~~d~~~g~~~~~~~~~~~~~~gi~v~~~~~~~~~--~~~~~~~~~l~~i~~~s~a~v 247 (555)
T 2e4u_A 170 DFYQAKAMAEILRFFNWTYVSTVASEGDYGETGIEAFEQEARLRNICIATAEKVGRS--NIRKSYDSVIRELLQKPNARV 247 (555)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEEESSTTHHHHHHHHHHHHHTTTCEEEEEEEECTT--CCHHHHHHHHHHHHTCTTCCE
T ss_pred hHHHHHHHHHHHHHcCCeEEEEEEeeChHHHHHHHHHHHHHHHCCccEEEEEEeCCC--CChHHHHHHHHHHhccCCCCE
Confidence 999999999999999999999999999999999999999999999999999999863 348899999999964 79999
Q ss_pred EEEEcchhhHHHHHHHHHHcCCCCCceEEEEeCcccccccCCCCCchhhhhcccceEEEEEecCCChhhHH---------
Q 002371 222 IVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFIDSKSPLSLKTAKSILGALTLRQHTPDSKRRRD--------- 292 (930)
Q Consensus 222 iv~~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~--------- 292 (930)
||+++...++..++++++++|+ +++||++++|....... ....+.++|++++.++..+.|.+++
T Consensus 248 Ii~~~~~~~~~~~~~~~~~~g~---~~~~i~s~~~~~~~~~~----~~~~~~~~G~l~~~~~~~~ipgf~~f~~~~~p~~ 320 (555)
T 2e4u_A 248 VVLFMRSDDSRELIAAANRVNA---SFTWVASDGWGAQESIV----KGSEHVAYGAITLELASHPVRQFDRYFQSLNPYN 320 (555)
T ss_dssp EEEECCHHHHHHHHHHHHHTTC---CCEEEECTTTTTCGGGT----TTCHHHHTTCEEEEECCCCCHHHHHHHHTCCTTT
T ss_pred EEEEcCHHHHHHHHHHHHHhcC---CeEEEEeccccccchhh----ccchhhcceEEEEEeccCCCCcHHHHHhhCCccc
Confidence 9999999999999999999997 68999999876543221 1124568999999887665555544
Q ss_pred ------HHHHHHhhcCCCC---------------------CCCchhhhHhhHHHHHHHHHHHhhhcCCcceecCCCccCC
Q 002371 293 ------FVSRWNTLSNGSI---------------------GLNPYGLYAYDTVWMIARALKLFLDQGNTISFSNDTKLNG 345 (930)
Q Consensus 293 ------f~~~~~~~~~~~~---------------------~~~~~~~~~YDav~~la~Al~~a~~~~~~~~~~~~~~~~~ 345 (930)
|.+.|+++|+... .+..++..+||||+++|+|++++.......
T Consensus 321 ~p~~~~~~~~w~~~f~c~~~~~~~~~~~C~~~e~l~~~~~~~~~~~~~~YdAVya~A~AL~~~~~~~~~~---------- 390 (555)
T 2e4u_A 321 NHRNPWFRDFWEQKFQCSLQNKRNHRQVCDKHLAIDSSNYEQESKIMFVVNAVYAMAHALHKMQRTLCPQ---------- 390 (555)
T ss_dssp CTTCTTHHHHHHHHTTCCCC------CCCCTTCCCCTTTCCCCTTHHHHHHHHHHHHHHHHHHHHHHCTT----------
T ss_pred CCCCHHHHHHHHHHcCCCCCCCCccCCCCCCccccccccccccccchhhHHHHHHHHHHHHHHHhhhcCC----------
Confidence 4456777776321 145678899999999999999986421100
Q ss_pred CCCCcccCCCccccCchHHHHH-HHHhcccc------Cccee-EEEccCCCCCCCcEEEEEeee-cC--ceeEEeEecCC
Q 002371 346 LGGGTLNLGALSIFDGGKKFLA-NILQTNMT------GLSGP-IHFNQDRSLLHPSYDIINVIE-HG--YPQQIGYWSNY 414 (930)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~l~~-~l~~~~f~------G~tG~-v~fd~~g~~~~~~y~I~~~~~-~~--~~~~VG~w~~~ 414 (930)
....|...... ++.+|++ +|++++|+ |++|. +.||++|++ ...|+|+|++. +| .++.||.|++
T Consensus 391 ---~~~~~~~~~~~-~~~~l~~~~L~~v~f~~~~~~~g~~G~~v~fd~~Gd~-~~~y~I~~~~~~~g~~~~~~VG~~~~- 464 (555)
T 2e4u_A 391 ---TTKLCDAMKIL-DGKKLYKEYLLKIQFTAPFNPNKGADSIVKFDTFGDG-MGRYNVFNLQQTGGKYSYLKVGHWAE- 464 (555)
T ss_dssp ---CSSCCGGGTSC-CHHHHHHHHTTCEEECCSSSCCSSSCCEEECCTTSCC-CCCEEEEEEECTTSSCEEEEEEEESS-
T ss_pred ---CCccccccCCC-CcccccHHhHhceeecccccccCCCCCeEEEcCCCCc-cceEEEEEEEecCCcEEEEEEEEecc-
Confidence 00112222223 4889999 99999999 99998 999999996 58999999962 22 3599999974
Q ss_pred CCccccCCcccccCCCCCCCCCccceeeEeCCCcccCCCccc
Q 002371 415 SGLSVVPPEKLYRKPANRSSSNQHLYSVVWPGGVTSKPRGWV 456 (930)
Q Consensus 415 ~gl~~~~~~~~~~~~~~~~~~~~~l~~i~Wpg~~~~~p~~~~ 456 (930)
.|. .+...|.|++ .++|++.|
T Consensus 465 -~l~------------------i~~~~I~W~~--~~~P~S~C 485 (555)
T 2e4u_A 465 -TLS------------------LDVDSIHWSR--NSVPTSQC 485 (555)
T ss_dssp -SEE------------------CCGGGCCCTT--SSCCCCCS
T ss_pred -eEE------------------EeccccccCC--CCCcceee
Confidence 332 2235689987 56788876
No 12
>3qek_A NMDA glutamate receptor subunit; amino terminal domain, ION channel, NMDA receptor, allosteri modulation, phenylethanolamine, polyamine; HET: NAG BMA; 2.00A {Xenopus laevis} PDB: 3qel_A* 3qem_A* 3q41_A*
Probab=100.00 E-value=1.7e-47 Score=430.46 Aligned_cols=338 Identities=22% Similarity=0.325 Sum_probs=283.5
Q ss_pred CCceEEEeEEeecCCCcchHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHH-HHHHHhcCcEEEEc----
Q 002371 23 KPEVLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMG-ALQFMETDTLAIVG---- 97 (930)
Q Consensus 23 ~~~~I~IG~~~~l~~~~G~~~~~a~~lAve~iN~~ggil~g~~l~l~~~D~~~~~~~a~~~-a~~li~~~v~aiiG---- 97 (930)
.+++|+||+++|++ ..+.|+++|+++||++||. .|++|+++..|+++||.+++.+ +++|++++|.+|||
T Consensus 2 ~~~~i~IG~i~~~s-----~~~~~~~lAv~~iN~~~~~-~~~~l~~~~~d~~~d~~~a~~~~~~~Li~~~V~aiiG~~~~ 75 (384)
T 3qek_A 2 DPKIVNIGAVLSTK-----KHEQIFREAVNQANKRHFT-RKIQLQATSVTHRPNAIQMALSVCEDLISSQVYAILVSHPP 75 (384)
T ss_dssp CCEEEEEEEEESSH-----HHHHHHHHHHHHHHHHSCC-SSEEEEEEEEECCSSHHHHHHHHHHHTGGGTEEEEEECC--
T ss_pred CceEEEEeEEeeCc-----hHHHHHHHHHHHHhccccC-CceEEEEEEecccCCHHHHHHHHHHHHHHcCceEEEEecCC
Confidence 46789999999998 6899999999999999876 4899999999999999999966 45589899999999
Q ss_pred -cCChhhHHHHHHhhhcCCCcEEEeecCCCCCCC-CCCCeEEEccCChHHHHHHHHHHHHHcCCcEEEEEEecCCcCcch
Q 002371 98 -PQSAVMAHVLSHLANELQVPLLSFTALDPTLSP-LQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNG 175 (930)
Q Consensus 98 -p~~S~~~~av~~~~~~~~vp~is~~a~~~~ls~-~~~~~~fr~~p~~~~~~~ai~~~l~~~~w~~vaii~~d~~~g~~~ 175 (930)
|.+|..+.+++++++.+++|+|+++++++.+++ .+|||+||+.|++..|+.+++++++++||++|++||+|++||++.
T Consensus 76 ~~~~s~~~~a~~~~~~~~~iP~is~~~~~~~ls~~~~~~~~fr~~~~~~~~~~a~~~~~~~~gw~~v~ii~~d~~~G~~~ 155 (384)
T 3qek_A 76 APTDHLTPTPISYTAGFYRIPVIGLTTRMSIYSDKSIHLSFLRTVPPYSHQALVWFEMMRLFNWNHVILIVSDDHEGRAA 155 (384)
T ss_dssp ------CCHHHHHHHHTTTCCEEESSCCCGGGGCSSSCTTEEESSCCGGGHHHHHHHHHHHTTCCEEEEEEESSHHHHHH
T ss_pred CCccchhHHHHHHHHhcCCCCEEecccCchhccCcccCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCcccHHH
Confidence 678889999999999999999999999999998 679999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCcEEE-----------E----------EEecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchhhHHHH
Q 002371 176 VTALGDKLAEIRCKIS-----------Y----------KSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMV 234 (930)
Q Consensus 176 ~~~~~~~l~~~g~~i~-----------~----------~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~~~~~~ 234 (930)
.+.|++++++.|++++ + ...++.+ ..|+..+|++|+++++|+|++++.+.++..+
T Consensus 156 ~~~~~~~~~~~g~~v~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~----~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~ 231 (384)
T 3qek_A 156 QKKLETLLEGKESKSKKRNYENLDQLSYDNKRGPKADKVLQFEPG----TKNLTALLLEAKELEARVIILSASEDDATAV 231 (384)
T ss_dssp HHHHHHHHC--------------CCSCCCCCCCCEEEEEEEECTT----CSCCHHHHHHHHTSSCCEEEEECCHHHHHHH
T ss_pred HHHHHHHHHhccCccccccccccceeeeccccCcccceecccCCc----hhhHHHHHHHHHhcCCcEEEEECCHHHHHHH
Confidence 9999999999998642 1 1122333 6789999999999999999999999999999
Q ss_pred HHHHHHcCCCCCceEEEEeCcccccccCCCCCchhhhhcccceEEEEEecCCChhhHHHHHHHHhhcCCCCCCCchhhhH
Q 002371 235 FDVAQRLGMMDSGYVWIATTWLSTFIDSKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTLSNGSIGLNPYGLYA 314 (930)
Q Consensus 235 ~~~a~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 314 (930)
+++++++||++++|+||+++++... ....+.++|++++..+.++.+ ++++
T Consensus 232 ~~~a~~~g~~~~~~~~i~~~~~~~~--------~~~~~~~~g~lg~~~~~~~~~----------------------~~~~ 281 (384)
T 3qek_A 232 YKSAAMLDMTGAGYVWLVGEREISG--------SALRYAPDGIIGLQLINGKNE----------------------SAHI 281 (384)
T ss_dssp HHHHHHTTCSSTTCEEECCSGGGSG--------GGGSSCCTTCEEEEETTTTCH----------------------HHHH
T ss_pred HHHHHHcCCccCCeEEEEecccccc--------ccccccCCccEEEEEcCCCch----------------------hHHH
Confidence 9999999999888999999986532 123467899999998765432 6789
Q ss_pred hhHHHHHHHHHHHhhhcCCcceecCCCccCCCCCCcccC-CCccccCchHHHHHHHHhccc-cCcceeEEEccCCCCCCC
Q 002371 315 YDTVWMIARALKLFLDQGNTISFSNDTKLNGLGGGTLNL-GALSIFDGGKKFLANILQTNM-TGLSGPIHFNQDRSLLHP 392 (930)
Q Consensus 315 YDav~~la~Al~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~l~~~~f-~G~tG~v~fd~~g~~~~~ 392 (930)
||||+++|+|++++..+.... +....| ....+|..+..|.+.+.+++| +|++|++.||++|++...
T Consensus 282 YdAV~~~a~Al~~~~~~~~~~------------~~~~~c~~~~~~~~~~~~l~~~~~~~~f~~G~~G~v~fd~~G~~~~~ 349 (384)
T 3qek_A 282 SDAVAVVAQAIHELFEMENIT------------DPPRGCVGNTNIWKTGPLFKRVLMSSKYPDGVTGRIEFNEDGDRKFA 349 (384)
T ss_dssp HHHHHHHHHHHHHHHTSSSCC------------CCCSCCTTCCCCCTTHHHHHHHHHTCCEEEETTEEECBCTTSCBCSC
T ss_pred HHHHHHHHHHHHHHHhccCCC------------CCCCccccCCCccccHHHHHHHHhcCCccCCCCcceEECCCCCCCcc
Confidence 999999999999987543110 111122 345678789999999999998 999999999999998789
Q ss_pred cEEEEEeeecCceeEEeEecC
Q 002371 393 SYDIINVIEHGYPQQIGYWSN 413 (930)
Q Consensus 393 ~y~I~~~~~~~~~~~VG~w~~ 413 (930)
.|+|+|++++++ +.||+|++
T Consensus 350 ~~~I~~~~~~~~-~~VG~w~~ 369 (384)
T 3qek_A 350 QYSIMNLQNRKL-VQVGIFNG 369 (384)
T ss_dssp CEEEEEEETTEE-EEEEEECS
T ss_pred cEEEEEEcCCce-EEEEEEeC
Confidence 999999998877 99999983
No 13
>3sm9_A Mglur3, metabotropic glutamate receptor 3; structural genomics, structural genomics consortium, SGC, CE membrane, G-protein coupled receptor; HET: Z99; 2.26A {Homo sapiens}
Probab=100.00 E-value=4.3e-47 Score=436.97 Aligned_cols=367 Identities=20% Similarity=0.317 Sum_probs=308.3
Q ss_pred CCCceEEEeEEeecC------------CC-cchHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHH
Q 002371 22 LKPEVLNVGAIFSFG------------TV-NGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFM 88 (930)
Q Consensus 22 ~~~~~I~IG~~~~l~------------~~-~G~~~~~a~~lAve~iN~~ggil~g~~l~l~~~D~~~~~~~a~~~a~~li 88 (930)
..+++|.||+++|++ .. .|.....|+++|+||||++|++|||++|+++++|+++++..|+.++.+|+
T Consensus 9 ~~~GDi~iGglf~l~~~~~~~~~C~~~~~~~g~~~~~a~~~AieeIN~~~~lLpg~~L~~~i~D~~~~~~~a~~~~~~ll 88 (479)
T 3sm9_A 9 KIEGDLVLGGLFPINEKGTGTEECGRINEDRGIQRLEAMLFAIDEINKDDYLLPGVKLGVHILDTCSRDTYALEQSLEFV 88 (479)
T ss_dssp EECCSEEEEEEECCEEECC-CCSEEEECTTTTHHHHHHHHHHHHHHHHCSSSSTTCCEEEEEEECTTCHHHHHHHHHHHH
T ss_pred ccCCCEEEEEEEEeEECCCCCCCCcccchhhhHHHHHHHHHHHHHHhCCCccCCCCeEeEEEEecCCChHHHHHHHHHHH
Confidence 467899999999995 12 57888999999999999999999999999999999999999999999999
Q ss_pred hc-------------------------CcEEEEccCChhhHHHHHHhhhcCCCcEEEeecCCCCCCC-CCCCeEEEccCC
Q 002371 89 ET-------------------------DTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSP-LQYPFFVQTAPN 142 (930)
Q Consensus 89 ~~-------------------------~v~aiiGp~~S~~~~av~~~~~~~~vp~is~~a~~~~ls~-~~~~~~fr~~p~ 142 (930)
++ +|+|||||.+|+.+.+++++++.+++|+|++++++|.+++ .+|||+||+.|+
T Consensus 89 ~~~~~~~~~pny~C~~~~~~~~~~~~~~v~aviG~~~S~~s~ava~i~~~~~iP~Is~~a~~~~lsd~~~~p~~fr~~ps 168 (479)
T 3sm9_A 89 RASLTKVDEAEYMCPDGSYAIQENIPLLIAGVIGGSYSSVSIQVANLLRLFQIPQISYASTSAKLSDKSRYDYFARTVPP 168 (479)
T ss_dssp HTCC-----------------------CEEEEECCSSHHHHHHHHHHHGGGTCCEEESSCCCGGGGCTTTTTTEEESSCC
T ss_pred hCCCccCCCCCCccCCCCccccccCCCceEEEECCCCcHHHHHHHHHHhcCCccEECCCcCCccccCcccCCCeEEeCCc
Confidence 74 5999999999999999999999999999999999999998 679999999999
Q ss_pred hHHHHHHHHHHHHHcCCcEEEEEEecCCcCcchHHHHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHH-HHHhcCCceE
Q 002371 143 DLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNEL-VKVRMMEARV 221 (930)
Q Consensus 143 ~~~~~~ai~~~l~~~~w~~vaii~~d~~~g~~~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l-~~l~~~~~~v 221 (930)
|..|+.+++++++++||++|++|++|++||+...+.|++++++.|+||++.+.++.. ....|+..++ +++++++|||
T Consensus 169 d~~~~~a~~~ll~~fgw~~V~ii~~dd~~G~~~~~~~~~~~~~~Gi~v~~~~~i~~~--~~~~d~~~~l~~~i~~s~a~v 246 (479)
T 3sm9_A 169 DFYQAKAMAEILRFFNWTYVSTVASEGDYGETGIEAFEQEARLRNISIATAEKVGRS--NIRKSYDSVIRELLQKPNARV 246 (479)
T ss_dssp THHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHHHTTTCEEEEEEEECC----CHHHHHHHHHHHHTCTTCCE
T ss_pred HHHHHHHHHHHHHHCCCeEEEEEEecchhhHHHHHHHHHHHHHCCceEEEEEEcCCC--CChHHHHHHHHHHHhcCCCeE
Confidence 999999999999999999999999999999999999999999999999999999865 4478999999 6788999999
Q ss_pred EEEEcchhhHHHHHHHHHHcCCCCCceEEEEeCcccccccCCCCCchhhhhcccceEEEEEecCCChhhHHHHHH-----
Q 002371 222 IVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFIDSKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSR----- 296 (930)
Q Consensus 222 iv~~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~----- 296 (930)
||+++...++..++++++++|+. ++||++++|........ .....+.|++++.++..+.|++++|...
T Consensus 247 Ii~~~~~~~~~~l~~~~~~~g~~---~~wI~s~~w~~~~~~~~----~~~~~~~G~l~~~~~~~~ipgf~~fl~~~~p~~ 319 (479)
T 3sm9_A 247 VVLFMRSDDSRELIAAASRANAS---FTWVASDGWGAQESIIK----GSEHVAYGAITLELASQPVRQFDRYFQSLNPYN 319 (479)
T ss_dssp EEEECCHHHHHHHHHHHHHTTCC---CEEEECTTTTTCHHHHT----TCTTTTTTCEEEEECCCCCHHHHHHHHTCCTTT
T ss_pred EEEEcChHHHHHHHHHHHHhCCE---EEEEEechhhcCccccc----cccccCceEEEEEeccCCCcchhhHhhccCcCc
Confidence 99999999999999999999985 79999998865321111 1235679999999999999998888643
Q ss_pred ----------HHhhcCCCC---------------------CCCchhhhHhhHHHHHHHHHHHhhhcCCcceecCCCccCC
Q 002371 297 ----------WNTLSNGSI---------------------GLNPYGLYAYDTVWMIARALKLFLDQGNTISFSNDTKLNG 345 (930)
Q Consensus 297 ----------~~~~~~~~~---------------------~~~~~~~~~YDav~~la~Al~~a~~~~~~~~~~~~~~~~~ 345 (930)
|+..|++.. .........||||+++|+|++++....+..
T Consensus 320 ~p~d~~~~~~w~~~f~C~~~~~~~~~~~C~~~~~l~~~~~~~~~~~~~vy~AVyavA~ALh~m~~~~~~~---------- 389 (479)
T 3sm9_A 320 NHRNPWFRDFWEQKFQCSLQNKRNHRRVCDKHLAIDSSNYEQESKIMFVVNAVYAMAHALHKMQRTLCPN---------- 389 (479)
T ss_dssp CTTCTTHHHHHHHHHTCBCCC---CSCBCCTTCCCCTTTCCCCTTHHHHHHHHHHHHHHHHHHHHHHSTT----------
T ss_pred CCCCHHHHHHHHHHcCCCCCCCcccccCCCCccccccCccccccchhhHHHHHHHHHHHHHHHHHhhcCC----------
Confidence 555554210 011234689999999999999987531110
Q ss_pred CCCCcccCCCccccCchHHHH-HHHHhccccCc------ce-eEEEccCCCCCCCcEEEEEeee---cCceeEEeEec
Q 002371 346 LGGGTLNLGALSIFDGGKKFL-ANILQTNMTGL------SG-PIHFNQDRSLLHPSYDIINVIE---HGYPQQIGYWS 412 (930)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~l~-~~l~~~~f~G~------tG-~v~fd~~g~~~~~~y~I~~~~~---~~~~~~VG~w~ 412 (930)
....|.....+ ++.+|+ ++|++++|.+. +| .+.||++|++ ...|+|+|++. ...+++||.|+
T Consensus 390 ---~~~~c~~~~~~-~~~qL~~~~Lk~v~F~~~~~~~~~~g~~v~fd~~G~~-~~~YdI~n~~~~~~~~~~~~VG~~~ 462 (479)
T 3sm9_A 390 ---TTKLCDAMKIL-DGKKLYKDYLLKINFTAPFNPNKDADSIVKFDTFGDG-MGRYNVFNFQNVGGKYSYLKVGHWA 462 (479)
T ss_dssp ---CSSCCHHHHSC-CHHHHHHHTGGGCCEECTTC-----CCEECCCTTCBC-CCCEEEEEEEESSSCEEEEEEEEES
T ss_pred ---CCcCCCCCCCc-ChHHHHHHHhcceeeccccCccccCCCeEEECCCCCc-ccceEEEEEEECCCcEEEEEEEEEe
Confidence 01123222333 388999 99999999998 45 6999999995 78999999973 22358999997
No 14
>3ks9_A Mglur1, metabotropic glutamate receptor 1; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99 NAG; 1.90A {Homo sapiens} SCOP: c.93.1.1 PDB: 1ewk_A* 1ewt_A* 1ewv_A 1isr_A* 1iss_A* 3lmk_A*
Probab=100.00 E-value=8.4e-46 Score=428.16 Aligned_cols=370 Identities=20% Similarity=0.322 Sum_probs=309.7
Q ss_pred CCCceEEEeEEeecCC-----------------CcchHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHH
Q 002371 22 LKPEVLNVGAIFSFGT-----------------VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGA 84 (930)
Q Consensus 22 ~~~~~I~IG~~~~l~~-----------------~~G~~~~~a~~lAve~iN~~ggil~g~~l~l~~~D~~~~~~~a~~~a 84 (930)
..+++|.||++||++. ..|.+...|+.+|+||||+++++|||++|+++++|+|+++..|++++
T Consensus 13 ~~~GDi~iGglf~vh~~~~~~~~~~~~c~~~~~~~g~~~~~a~~~AieeIN~~~~lLpn~tLg~~i~D~~~~~~~a~~~a 92 (496)
T 3ks9_A 13 RMDGDVIIGALFSVHHQPPAEKVPERKCGEIREQYGIQRVEAMFHTLDKINADPVLLPNITLGSEIRDSCWHSSVALEQS 92 (496)
T ss_dssp EECCSEEEEEEECSBCCCCGGGTTTTCCCCBCTTTTHHHHHHHHHHHHHHHTCSSSSTTCCEEEEEEECTTCHHHHHHHH
T ss_pred ecCCCEEEEEEEEeEEcCccCCCCCCCCccccchhhHHHHHHHHHHHHHHhCCCCCCCCceEeEEEEEcCCCcHHHHHHH
Confidence 5788999999999852 13567789999999999999999999999999999999999999999
Q ss_pred HHHH-----------------------------hcCcEEEEccCChhhHHHHHHhhhcCCCcEEEeecCCCCCCC-CCCC
Q 002371 85 LQFM-----------------------------ETDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSP-LQYP 134 (930)
Q Consensus 85 ~~li-----------------------------~~~v~aiiGp~~S~~~~av~~~~~~~~vp~is~~a~~~~ls~-~~~~ 134 (930)
.+|+ +++|+|||||.+|+.+.+++++++.+++|+|++++++|.+++ .+||
T Consensus 93 ~~ll~~~~~s~~~~~~~n~~C~~~~~~~~~~~~~~~v~aviG~~~S~~s~ava~i~~~~~iP~Is~~a~~~~lsd~~~~p 172 (496)
T 3ks9_A 93 IEFIRDSLISIRDEKDGINRCLPDGQSLPPGRTKKPIAGVIGPGSSSVAIQVQNLLQLFDIPQIAYSATSIDLSDKTLYK 172 (496)
T ss_dssp HHHHSTTC--------------------------CCEEEEECCSSHHHHHHHHHHHGGGTCCEEESSCCCGGGGCTTTCT
T ss_pred HHHHHhhhccccccCCCCccccCcccccccccCCCceEEEECCCccHHHHHHHHHHhhcceeEECCCcCCccccCccCCC
Confidence 9998 338999999999999999999999999999999999999999 6799
Q ss_pred eEEEccCChHHHHHHHHHHHHHcCCcEEEEEEecCCcCcchHHHHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHH
Q 002371 135 FFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKV 214 (930)
Q Consensus 135 ~~fr~~p~~~~~~~ai~~~l~~~~w~~vaii~~d~~~g~~~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l 214 (930)
|+||+.|+|..|+.+++++++++||++|++|++|++||+...+.|++++++.|+||++.+.++.. ....|+..++++|
T Consensus 173 ~~frt~psd~~~~~ai~~ll~~fgw~~V~li~~dd~~G~~~~~~~~~~~~~~Gi~v~~~~~i~~~--~~~~d~~~~l~~i 250 (496)
T 3ks9_A 173 YFLRVVPSDTLQARAMLDIVKRYNWTYVSAVHTEGNYGESGMDAFKELAAQEGLSIAHSDKIYSN--AGEKSFDRLLRKL 250 (496)
T ss_dssp TEEESSCCTHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTT--CCHHHHHHHHHHH
T ss_pred ceEEecCChHHHHHHHHHHHHHcCCcEEEEEEeccHHHHHHHHHHHHHHHHcCceEEEEEEECCC--CCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999888754 4588999999999
Q ss_pred hcC--CceEEEEEcchhhHHHHHHHHHHcCCCCCceEEEEeCcccccccCCCCCchhhhhcccceEEEEEecCCChhhHH
Q 002371 215 RMM--EARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFIDSKSPLSLKTAKSILGALTLRQHTPDSKRRRD 292 (930)
Q Consensus 215 ~~~--~~~viv~~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 292 (930)
+++ +++||++++...++..+++++++.|+.+ .++||++++|....... ......+.|++++.++.++.|++++
T Consensus 251 ~~~~~~a~vii~~~~~~~~~~l~~~~~~~g~~~-k~~~i~s~~w~~~~~~~----~~~~~~~~G~l~~~~~~~~ipgf~~ 325 (496)
T 3ks9_A 251 RERLPKARVVVCFCEGMTVRGLLSAMRRLGVVG-EFSLIGSDGWADRDEVI----EGYEVEANGGITIKLQSPEVRSFDD 325 (496)
T ss_dssp HTTTTTTCEEEEECCHHHHHHHHHHHHHHTCCS-CCEEEECTTTTTCHHHH----TTCHHHHTTCEEEEECCCCCHHHHH
T ss_pred HhccCceEEEEEecChHHHHHHHHHHHHhCCCC-cEEEEEechhccccccc----cccccccCceEEEeccCCcCcchHh
Confidence 985 8899999999999999999999999864 46899999886532211 1123568999999999999999998
Q ss_pred HHHH---------------HHhhcCCCCC------------------------CCchhhhHhhHHHHHHHHHHHhhhcCC
Q 002371 293 FVSR---------------WNTLSNGSIG------------------------LNPYGLYAYDTVWMIARALKLFLDQGN 333 (930)
Q Consensus 293 f~~~---------------~~~~~~~~~~------------------------~~~~~~~~YDav~~la~Al~~a~~~~~ 333 (930)
|... |...|++... ........|+||+++|+|++++....+
T Consensus 326 fl~~~~p~~~p~d~~l~~~W~~~f~C~~~~~~~~~~~~~~~C~~~~~l~~~~~~~~~~~~vy~AVyavAhALh~m~~~~~ 405 (496)
T 3ks9_A 326 YFLKLRLDTNTRNPWFPEFWQHRFQCRLPGHLLENPNFKRICTGNESLEENYVQDSKMGFVINAIYAMAHGLQNMHHALC 405 (496)
T ss_dssp HHTTCCTTTCCSCTTHHHHHHHHTTCBCCC-----CCCSSBCCSCCCTTTTCCCCTTHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HhccCCcCCCCCCHHHHHHHHHHcCCCCCCCccccccccCCCCCcccccccccccchHHHHHHHHHHHHHHHHHHHhccC
Confidence 8643 5555542100 001123599999999999999875321
Q ss_pred cceecCCCccCCCCCCcccCCCccccCchHHHHHHHHhccccCccee-EEEccCCCCCCCcEEEEEeee--c--CceeEE
Q 002371 334 TISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGP-IHFNQDRSLLHPSYDIINVIE--H--GYPQQI 408 (930)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~f~G~tG~-v~fd~~g~~~~~~y~I~~~~~--~--~~~~~V 408 (930)
.. ....|.....+ .+.+|++.|++++|.+.+|. +.||++|++ ...|+|+|++. + ..+++|
T Consensus 406 ~~-------------~~~~c~~~~~~-~~~qL~~~Lk~v~f~~~~g~~v~fd~~gd~-~~~YdI~n~~~~~~~~~~~~~V 470 (496)
T 3ks9_A 406 PG-------------HVGLCDAMKPI-DGSKLLDFLIKSSFIGVSGEEVWFDEKGDA-PGRYDIMNLQYTEANRYDYVHV 470 (496)
T ss_dssp TT-------------CSSCCGGGSSC-CHHHHHHHHHTCEEECTTSCEEECCTTSCC-CCEEEEEEEEECC--CEEEEEE
T ss_pred CC-------------CCCCCcCCCCC-CHHHHHHHHHhcCCcCCCCCEEEECCCCCc-cceEEEEEEEECCCCCEEEEEE
Confidence 10 11123333345 38899999999999999995 999999995 78999999973 2 235899
Q ss_pred eEecC
Q 002371 409 GYWSN 413 (930)
Q Consensus 409 G~w~~ 413 (930)
|.|++
T Consensus 471 G~~~~ 475 (496)
T 3ks9_A 471 GTWHE 475 (496)
T ss_dssp EEEET
T ss_pred EEEeC
Confidence 99973
No 15
>3mq4_A Mglur7, metabotropic glutamate receptor 7; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99; 2.80A {Homo sapiens} SCOP: c.93.1.0 PDB: 2e4z_A*
Probab=100.00 E-value=7.1e-47 Score=436.51 Aligned_cols=369 Identities=21% Similarity=0.349 Sum_probs=282.0
Q ss_pred CCCceEEEeEEeecCC-------------CcchHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHH
Q 002371 22 LKPEVLNVGAIFSFGT-------------VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFM 88 (930)
Q Consensus 22 ~~~~~I~IG~~~~l~~-------------~~G~~~~~a~~lAve~iN~~ggil~g~~l~l~~~D~~~~~~~a~~~a~~li 88 (930)
.++++|+||+++|++. ..|.....|+++|+||||++|++|||++|+++++|+|+++..|++++.+|+
T Consensus 12 ~~~gdi~IG~lf~l~~~~~~~~~C~~~~~~~g~~~~~a~~~AieeIN~~~~lLpn~~L~~~i~D~~~~~~~a~~~a~~ll 91 (481)
T 3mq4_A 12 RIEGDVTLGGLFPVHAKGPSGVPCGDIKRENGIHRLEAMLYALDQINSDPNLLPNVTLGARILDTCSRDTYALEQSLTFV 91 (481)
T ss_dssp EECCSEEEEEEECSBCCC-----CCSBCTTTTHHHHHHHHHHHHHHTTCSSSSSSCCEEEEEEECTTCHHHHHHHHGGGG
T ss_pred ccCCCEEEEEEEEceeCCCCCCCCccccchhhHHHHHHHHHHHHHHhCCCCcCCCceEEEEEEeCCCChHHHHHHHHHHH
Confidence 5678999999999973 357888999999999999999999999999999999999999999999998
Q ss_pred h-----------------------cCcEEEEccCChhhHHHHHHhhhcCCCcEEEeecCCCCCCC-CCCCeEEEccCChH
Q 002371 89 E-----------------------TDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSP-LQYPFFVQTAPNDL 144 (930)
Q Consensus 89 ~-----------------------~~v~aiiGp~~S~~~~av~~~~~~~~vp~is~~a~~~~ls~-~~~~~~fr~~p~~~ 144 (930)
+ ++|+|||||.+|+.+.+++++++.+++|+|++++++|.+++ .+|||+||+.|+|.
T Consensus 92 ~~~~~~~~pny~C~~~~~~~~~~~~~v~aiiG~~~S~~s~ava~~~~~~~iP~Is~~a~~~~lsd~~~~p~~fr~~psd~ 171 (481)
T 3mq4_A 92 QALIQKDTSDVRCTNGEPPVFVKPEKVVGVIGASGSSVSIMVANILRLFQIPQISYASTAPELSDDRRYDFFSRVVPPDS 171 (481)
T ss_dssp GGGSCCCC--------------CCCCEEEEECCSSHHHHHHHHHHHTTTTCCEEESSCCCGGGGCTTTTTTEEESSCCTH
T ss_pred hCCcccCCCCcccCCCCCcccccCCCcEEEEcCCCcHHHHHHHHHHHhCCCCEEccccCCccccCcccCCceEEecCchH
Confidence 6 46999999999999999999999999999999999999999 78999999999999
Q ss_pred HHHHHHHHHHHHcCCcEEEEEEecCCcCcchHHHHHHHHHh-cCcEEEEEEecCCCCCCChh--HHHHHHHHHh-cCCce
Q 002371 145 YLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAE-IRCKISYKSALPPDQSVTET--DVRNELVKVR-MMEAR 220 (930)
Q Consensus 145 ~~~~ai~~~l~~~~w~~vaii~~d~~~g~~~~~~~~~~l~~-~g~~i~~~~~~~~~~~~~~~--d~~~~l~~l~-~~~~~ 220 (930)
.|+.+++++++++||++|++|++|++||+...+.|++++++ .|+||++.+.++.. .... |+...+.+++ +++||
T Consensus 172 ~~~~a~~~ll~~fgw~~V~li~~d~~~G~~~~~~~~~~~~~~~Gi~va~~~~i~~~--~~~~~~d~~~~l~~i~~~s~a~ 249 (481)
T 3mq4_A 172 FQAQAMVDIVKALGWNYVSTLASEGSYGEKGVESFTQISKEAGGLSIAQSVRIPQE--RKDRTIDFDRIIKQLLDTPNSR 249 (481)
T ss_dssp HHHHHHHHHHHHHTCCEEEEC---CHHHHHHHHHHHHCC---CCCEECCCCCCCCC--------CCSHHHHCCCCC----
T ss_pred HHHHHHHHHHHHCCCeEEEEEEEcchhHHHHHHHHHHHHHHhCCEEEEEEEEcCCC--CccchHHHHHHHHHHHhcCCCE
Confidence 99999999999999999999999999999999999999986 79999998888765 2233 7889999998 58999
Q ss_pred EEEEEcchhhHHHHHHHHHHcCCCCCceEEEEeCcccccccCCCCCchhhhhcccceEEEEEecCCChhhHHHHHH----
Q 002371 221 VIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFIDSKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSR---- 296 (930)
Q Consensus 221 viv~~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~---- 296 (930)
|||+++...++..+++++++.|+.+ +++||+++.|....... ......+.|++++.++..+.|++++|...
T Consensus 250 vIi~~~~~~~~~~l~~~~~~~g~~~-~~~wI~s~~w~~~~~~~----~~~~~~~~G~l~~~~~~~~ipgf~~fl~~~~p~ 324 (481)
T 3mq4_A 250 AVVIFANDEDIKQILAAAKRADQVG-HFLWVGSDSWGSKINPL----HQHEDIAEGAITIQPKRATVEGFDAYFTSRTLE 324 (481)
T ss_dssp CEEECCCSSHHHHHC-----------CCCEEEC---------------------CCCEEEEECCCCCHHHHHHHHTCCTT
T ss_pred EEEEEEChHHHHHHHHHHHHccCCc-ceEEEEECccccccccc----cccchhhccEEEEecCcCccccHHHHhhcCCcC
Confidence 9999999999999999999999864 48999999886543221 12246689999999999999999888643
Q ss_pred -----------HHhhcCCCCC--------------------------CCchhhhHhhHHHHHHHHHHHhhhcCCcceecC
Q 002371 297 -----------WNTLSNGSIG--------------------------LNPYGLYAYDTVWMIARALKLFLDQGNTISFSN 339 (930)
Q Consensus 297 -----------~~~~~~~~~~--------------------------~~~~~~~~YDav~~la~Al~~a~~~~~~~~~~~ 339 (930)
|+..|++... ........||||+++|+|++++....+..
T Consensus 325 ~~p~d~~~~~~w~~~f~C~~~~~~~~~~~~~~~Ct~~e~l~~~~~~~~~~~~~~vy~AVyavA~ALh~m~~~~~~~---- 400 (481)
T 3mq4_A 325 NNRRNVWFAEYWEENFNCKLTISGSKKEDTDRKCTGQERIGKDSNYEQEGKVQFVIDAVYAMAHALHHMNKDLCAD---- 400 (481)
T ss_dssp TCTTCTTHHHHHHHHHTCCC------------CCCSCCCTTTSSCCCCCTTHHHHHHHHHHHHHHHHHHHHHHCC-----
T ss_pred cCCCCHHHHHHHHHhcCCCCCCccccccccCCCCCCccccCcCCcccccchhhhHHHHHHHHHHHHHHHHHhhCCC----
Confidence 5555542110 01234569999999999999987532110
Q ss_pred CCccCCCCCCcccCCCccccCchHHHHHHHHhccccCcce-eEEEccCCCCCCCcEEEEEee--ec--CceeEEeEec
Q 002371 340 DTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSG-PIHFNQDRSLLHPSYDIINVI--EH--GYPQQIGYWS 412 (930)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~f~G~tG-~v~fd~~g~~~~~~y~I~~~~--~~--~~~~~VG~w~ 412 (930)
....|.....+ ++.+|++.|++++|.+.+| .+.||++|++ ...|+|+|++ ++ ..++.||.|+
T Consensus 401 ---------~~~~c~~~~~~-~~~qL~~~Lk~v~F~~~~G~~v~fd~~Gd~-~~~YdI~n~~~~~~~~~~~~~VG~~~ 467 (481)
T 3mq4_A 401 ---------YRGVCPEMEQA-GGKKLLKYIRNVNFNGSAGTPVMFNKNGDA-PGRYDIFQYQTTNTSNPGYRLIGQWT 467 (481)
T ss_dssp ------------CCHHHHTS-CHHHHHHHHHTCEEECTTSSEEECCTTSCC-CCEEEEEEEC-----CCCEEEEEEEE
T ss_pred ---------CCCCCCCCCCc-CHHHHHHHHhcceeecCCCCEEEECCCCCC-ceeEEEEEEEECCCCcEEEEEEEEEc
Confidence 01123333334 3789999999999999999 6999999995 7899999997 22 2348999997
No 16
>3i45_A Twin-arginine translocation pathway signal protei; structural genomics; 1.36A {Rhodospirillum rubrum}
Probab=100.00 E-value=1.6e-42 Score=390.40 Aligned_cols=361 Identities=14% Similarity=0.133 Sum_probs=309.8
Q ss_pred CceEEEeEEeecCCC--cchHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhc-CcEEEEccCC
Q 002371 24 PEVLNVGAIFSFGTV--NGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMET-DTLAIVGPQS 100 (930)
Q Consensus 24 ~~~I~IG~~~~l~~~--~G~~~~~a~~lAve~iN~~ggil~g~~l~l~~~D~~~~~~~a~~~a~~li~~-~v~aiiGp~~ 100 (930)
.++|+||+++|++.. +|.....|+++|+++||++||+++|+++++++.|+++++..+++.+++|+++ +|++||||.+
T Consensus 3 ~~~i~IG~~~p~sg~~~~g~~~~~g~~~a~~~iN~~ggi~Gg~~i~l~~~D~~~~~~~~~~~~~~li~~~~v~aiiG~~~ 82 (387)
T 3i45_A 3 LEAIRIGEINSYSQIPAFTLPYRNGWQLAVEQINAAGGLLGGRPLEVISRDDGGDPGKAVTAAQELLTRHGVHALAGTFL 82 (387)
T ss_dssp CCCEEEEEEECTTTCHHHHHHHHHHHHHHHHHHHHTTCBTTTBCEEEEEEECTTCHHHHHHHHHHHHHHHCCSEEEECCS
T ss_pred CCCEEEEEeecCCCchhhhHHHHHHHHHHHHHHHhcCCCCCCcceEEEEecCCCCHHHHHHHHHHHHHhcCCEEEECCcc
Confidence 468999999999864 4778899999999999999999855999999999999999999999999996 9999999999
Q ss_pred hhhHHHHHHhhhcCCCcEEEeecCCCCCCC-CCCCeEEEccCChHHHHHHHHHHHHHcCCcEEEEEEecCCcCcchHHHH
Q 002371 101 AVMAHVLSHLANELQVPLLSFTALDPTLSP-LQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTAL 179 (930)
Q Consensus 101 S~~~~av~~~~~~~~vp~is~~a~~~~ls~-~~~~~~fr~~p~~~~~~~ai~~~l~~~~w~~vaii~~d~~~g~~~~~~~ 179 (930)
|..+.++++++++.+||+|+++++++.++. ..+||+||+.|++..++.++++++.++||++|++|+.|++||+...+.+
T Consensus 83 s~~~~a~~~~~~~~~ip~i~~~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~g~~~vaii~~~~~~g~~~~~~~ 162 (387)
T 3i45_A 83 SHVGLAVSDFARQRKVLFMASEPLTDALTWEKGNRYTYRLRPSTYMQAAMLAAEAAKLPITRWATIAPNYEYGQSAVARF 162 (387)
T ss_dssp HHHHHHHHHHHHHHTCCEEECSCCCGGGTTTTCCTTEEECSCCHHHHHHHHHHHHTTSSCCEEEEECCSSHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCceEEecCCCchhhhhccCCCCEEEeCCChHHHHHHHHHHHHHcCCCeEEEEeCCchHhHHHHHHH
Confidence 999999999999999999999998888875 6789999999999999999999999999999999999999999999999
Q ss_pred HHHHHhc--CcEEEEEEecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchhhHHHHHHHHHHcCCCCCceEEEEeCccc
Q 002371 180 GDKLAEI--RCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLS 257 (930)
Q Consensus 180 ~~~l~~~--g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~~~ 257 (930)
++.+++. |++++....++.+ ..|+.+.++++++.+||+|++++.+.++..+++++++.|+... +++.+....
T Consensus 163 ~~~l~~~~~g~~vv~~~~~~~~----~~d~~~~~~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~g~~~~--~~i~~~~~~ 236 (387)
T 3i45_A 163 KELLLAARPEVTFVAEQWPALY----KLDAGPTVQALQQAEPEGLFNVLFGADLPKFVREGRVRGLFAG--RQVVSMLTG 236 (387)
T ss_dssp HHHHHHHCTTCEEEEEECCCTT----CCCHHHHHHHHHHTCCSEEEECCCTTHHHHHHHHHHHHTSSTT--CEEEEEEEE
T ss_pred HHHHHHhCCCcEEEeeecCCCC----CcCHHHHHHHHHhCCCCEEEEcCccHHHHHHHHHHHHcCCCCC--CeEEeecCC
Confidence 9999999 9999988888876 6789999999999999999999999999999999999998543 333332221
Q ss_pred ccccCCCCCchhhhhcccceEEEEE-e-cCCChhhHHHHHHHHhhcCCCCCCCchhhhHhhHHHHHHHHHHHhhhcCCcc
Q 002371 258 TFIDSKSPLSLKTAKSILGALTLRQ-H-TPDSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARALKLFLDQGNTI 335 (930)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~g~~~~~~-~-~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~YDav~~la~Al~~a~~~~~~~ 335 (930)
..... . ....+..+|++.... + .+++|..++|.++|+++|+ ..|+.+++.+|||++++++|++++++.
T Consensus 237 ~~~~~-~---~~~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~--~~p~~~~~~~Yda~~~~a~Al~~ag~~---- 306 (387)
T 3i45_A 237 EPEYL-N---PLKDEAPEGWIVTGYPWYDIDTAPHRAFVEAYRARWK--EDPFVGSLVGYNTLTAMAVAFEKAGGT---- 306 (387)
T ss_dssp SHHHH-G---GGGGGCCSSCEEEECCGGGCCCHHHHHHHHHHHHHHS--SCCCHHHHHHHHHHHHHHHHHHHHTSC----
T ss_pred ChHHH-H---HhhhhccCceEEecccccCCCCHHHHHHHHHHHHHHC--CCCCcHHHHHHHHHHHHHHHHHHhCCC----
Confidence 11100 0 112245688776532 3 3578999999999999997 678899999999999999999998321
Q ss_pred eecCCCccCCCCCCcccCCCccccCchHHHHHHHHhccccCcceeEEEccCCCCCCCcEEEEEee-ecCceeEEeEecCC
Q 002371 336 SFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVI-EHGYPQQIGYWSNY 414 (930)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~f~G~tG~v~fd~~g~~~~~~y~I~~~~-~~~~~~~VG~w~~~ 414 (930)
++++|+++|++++|+|++|+++|++++........|.+++ .+|. ..++.|...
T Consensus 307 -------------------------~~~~v~~al~~~~~~g~~G~i~f~~~~~~~~~~~~i~~~~~~~g~-~~i~~w~~~ 360 (387)
T 3i45_A 307 -------------------------ESETLVETLKDMAFSTPMGPLSFRASDHQSTMGAWVGRTALRDGK-GVMVDWRYV 360 (387)
T ss_dssp -------------------------CHHHHHHHTTTCEEEETTEEEEBCTTTCBBCCCEEEEEEEEETTE-EEEEEEEEE
T ss_pred -------------------------CHHHHHHHHhcCCCcCCCCCeEEcCCCCccccceeEEEEEeeCCc-eeEEeeEEe
Confidence 4899999999999999999999997444456777888886 5677 999999999
Q ss_pred CCccccCCcccc
Q 002371 415 SGLSVVPPEKLY 426 (930)
Q Consensus 415 ~gl~~~~~~~~~ 426 (930)
.|....+|+...
T Consensus 361 ~~~~~~p~~~~~ 372 (387)
T 3i45_A 361 DGGSVLPPPEVV 372 (387)
T ss_dssp CGGGGSCCHHHH
T ss_pred CchhcCCCHHHH
Confidence 988877765543
No 17
>4f06_A Extracellular ligand-binding receptor; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: MSE PHB; 1.30A {Rhodopseudomonas palustris} PDB: 4evs_A*
Probab=100.00 E-value=1.4e-42 Score=388.18 Aligned_cols=338 Identities=16% Similarity=0.156 Sum_probs=294.1
Q ss_pred CCceEEEeEEeecCC---CcchHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCC-ChHHHHHHHHHHHhc-CcEEEEc
Q 002371 23 KPEVLNVGAIFSFGT---VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKF-NGFLSIMGALQFMET-DTLAIVG 97 (930)
Q Consensus 23 ~~~~I~IG~~~~l~~---~~G~~~~~a~~lAve~iN~~ggil~g~~l~l~~~D~~~-~~~~a~~~a~~li~~-~v~aiiG 97 (930)
.+++||||+++|+|. .+|...++|+++|++++| ||++ |++|+++++|+++ +|..++..+++|+++ +|.+|||
T Consensus 2 ~Ad~IkIG~~~plSG~~a~~G~~~~~g~~la~~~~n--ggi~-G~~ielv~~D~~~~~p~~a~~~a~~Li~~d~V~aiiG 78 (371)
T 4f06_A 2 NADTIKVGVIGTMSGPYALFGKNYKMGIDAWVAEHG--NKVA-GHTVEFVYRDEVSPNPAQSKALAQELIVKEKVQYLAG 78 (371)
T ss_dssp --CEEEEEEEECCSSTTHHHHHHHHHHHHHHHHHHC--SEET-TEEEEEEEEECCSSCHHHHHHHHHHHHHTSCCSEEEE
T ss_pred CCCcEEEEEEeCCcCchHHhHHHHHHHHHHHHHHhC--CCCC-CEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEEe
Confidence 467999999999985 458899999999999998 7775 9999999999986 899999999999987 9999999
Q ss_pred cCChhhHHHHHHhhhcCCCcEEEeecCCCCCCCCCCCeEEEccCChHHHHHHHHHHHHHcCCcEEEEEEecCCcCcchHH
Q 002371 98 PQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVT 177 (930)
Q Consensus 98 p~~S~~~~av~~~~~~~~vp~is~~a~~~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~~~w~~vaii~~d~~~g~~~~~ 177 (930)
|.+|+.+.++++++++.++|+|+++++++.++.. .||+||+.+++..++.+++++++..||++|++|+.|++||+...+
T Consensus 79 ~~~S~~~~a~~~~~~~~~vp~i~~~a~~~~~~~~-~~~~fr~~~~~~~~~~~~~~~~~~~g~k~vaii~~~~~~g~~~~~ 157 (371)
T 4f06_A 79 LYFTPNAMAVAPLLQEAKVPMVVMNAATSSITEK-SPYIVRTSFTMFQNTVPAAKVAKQKGATKVAIAVSDYGPGIDAET 157 (371)
T ss_dssp CCSHHHHHHHGGGHHHHTCCEEESSCCCGGGGGG-CTTEEESSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHH
T ss_pred cccccchHHHHHHHHhhcCCccccccccchhccc-CCcceecccchhhhhhhhhhhhhhcCceEEEEEcCCcccchhHHH
Confidence 9999999999999999999999999999888754 489999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCCceEEEEEcc-hhhHHHHHHHHHHcCCCCCceEEEEeCcc
Q 002371 178 ALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY-SRTGLMVFDVAQRLGMMDSGYVWIATTWL 256 (930)
Q Consensus 178 ~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~-~~~~~~~~~~a~~~g~~~~~~~~i~~~~~ 256 (930)
.+++.+++.|++|+..+.++.+ +.|+++++.+|++++||+|++... +.++..+++++++.|+....+.++.+...
T Consensus 158 ~~~~~~~~~g~~vv~~~~~~~~----~~d~~~~l~~i~~~~pd~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 233 (371)
T 4f06_A 158 AFKKTFEAEGGKVVEAVRMPLS----TTDFGPIMQRIKNSGADMIFTFLPAGPPTLGFVKAYIDNGLKAGGVKLMSTGDV 233 (371)
T ss_dssp HHHHHHHHTTCEEEEEEEECTT----CCCCHHHHHHHHHHTCSEEEEECCTTHHHHHHHHHHHHTTTTTTTCEEEEEGGG
T ss_pred HHHHHHHhcCCceEEEEecCcc----cccHHHHHHHHHhcCCCEEEEEeccCchhhHHHHHHHHhhhhccCcEEEEeccc
Confidence 9999999999999999999988 789999999999999999988765 47788899999999998777767666544
Q ss_pred cccccCCCCCchhhhhcccceEEEEEecC--CChhhHHHHHHHHhhcCCCCCCCchhhhHhhHHHHHHHHHHHhhhcCCc
Q 002371 257 STFIDSKSPLSLKTAKSILGALTLRQHTP--DSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARALKLFLDQGNT 334 (930)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~f~~~~~~~~~~~~~~~~~~~~~YDav~~la~Al~~a~~~~~~ 334 (930)
...... ....+..+|++...++.+ ++|..++|.++|+++++....|+.+++.+||+++++++|+++....
T Consensus 234 ~~~~~~-----~~~~~~~~g~~~~~~~~~~~~~p~~~~f~~~~~~~~~~~~~~~~~a~~~Yda~~~l~~Ai~~~ag~--- 305 (371)
T 4f06_A 234 VTEPDL-----PNIGEAGLGILSTYHYAVSHDSPENKAFLALLQKGGAKLDEVTMTSVAAYDGARLIYKMIEATSGK--- 305 (371)
T ss_dssp GCGGGH-----HHHCGGGTTCEEEESCCTTCCSHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHHHHHTTTS---
T ss_pred CCHHHH-----HhcccccCceEEeeccccCCCChhHHHHHHHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHhcCC---
Confidence 332221 234567789888877654 5788999999999998754567889999999999999999974211
Q ss_pred ceecCCCccCCCCCCcccCCCccccCchHHHHHHHHhccccCcceeEEEccCCCCCCCcEEEEEeee
Q 002371 335 ISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVIE 401 (930)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~f~G~tG~v~fd~~g~~~~~~y~I~~~~~ 401 (930)
. ++++++++|++++|+|++|+++||++++.....+.|.+++.
T Consensus 306 ------------------------~-d~~~v~~al~~~~~~~~~G~i~fd~~~~~~~~~~~i~~v~~ 347 (371)
T 4f06_A 306 ------------------------S-DPDKAIAAVKGMKWVSPRGEVSIDPETRHITQNVYLREVEK 347 (371)
T ss_dssp ------------------------C-CHHHHHHHHTTCEEEETTEEEEECTTTCBEEEEEEEEEEEE
T ss_pred ------------------------C-CHHHHHHHHhCCCeeCCcEEEEEcCCCCcccCCEEEEEEEe
Confidence 1 48999999999999999999999987765667788888873
No 18
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}
Probab=100.00 E-value=2.3e-42 Score=393.45 Aligned_cols=352 Identities=14% Similarity=0.080 Sum_probs=290.1
Q ss_pred CCCCceEEEeEEeecCCCc---chHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCC-CChHHHHHHHHHHHh-cCcEEE
Q 002371 21 ALKPEVLNVGAIFSFGTVN---GQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAK-FNGFLSIMGALQFME-TDTLAI 95 (930)
Q Consensus 21 ~~~~~~I~IG~~~~l~~~~---G~~~~~a~~lAve~iN~~ggil~g~~l~l~~~D~~-~~~~~a~~~a~~li~-~~v~ai 95 (930)
++.+++|+||+++|++... |...++|+++|+++||++||++ |++|+++++|++ +++..++..+++|++ ++|.+|
T Consensus 9 a~~~~~i~IG~~~plsG~~a~~g~~~~~g~~lA~~~iN~~ggi~-G~~i~l~~~D~~~~~~~~a~~~a~~li~~~~v~ai 87 (419)
T 3h5l_A 9 AQSSDPVVIGCPAPLTGIVAADGIEFQRGIQMAADEINAVGGIL-GRPIELVFADTQSKGVDVVIQSAQRLIDRDNASAL 87 (419)
T ss_dssp ----CCEEEEEEECCSSTTHHHHHHHHHHHHHHHHHHHTTTSBT-TBCEEEEEEECTTCCHHHHHHHHHHHHHTTCCSEE
T ss_pred hccCCCEEEEEeecCCCcccccCHHHHHHHHHHHHHHHhcCCcC-ceEEEEEEccCCCCCHHHHHHHHHHHhhhcCCeEE
Confidence 3466799999999998654 8899999999999999999997 899999999998 699999999999999 599999
Q ss_pred EccCChhhHHHHHHhhhcCCCcEEEeecCCCCCC-----C-CCCCeEEEccCChHHHHHHHHHHHHHc--------CCcE
Q 002371 96 VGPQSAVMAHVLSHLANELQVPLLSFTALDPTLS-----P-LQYPFFVQTAPNDLYLMSAIAEMVSYF--------GWGE 161 (930)
Q Consensus 96 iGp~~S~~~~av~~~~~~~~vp~is~~a~~~~ls-----~-~~~~~~fr~~p~~~~~~~ai~~~l~~~--------~w~~ 161 (930)
|||.+|..+.++++++++++||+|+++ +++.++ + ..|+|+||+.|++..++.+++++++++ ||++
T Consensus 88 iG~~~s~~~~a~~~~~~~~~ip~i~~~-~~~~~~~~~~~~~~~~~~~f~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (419)
T 3h5l_A 88 IAGYNLENGTALHDVAADAGVIAMHAN-TVAVHDEMVKSDPDRYWGTFQYDPPETLYGGGFLKFLKDIEDNGEFSRPNNK 166 (419)
T ss_dssp ECSCCSSCSCHHHHHHHHHTCEEEECC-CCHHHHHHHHHCTTTCTTEEESSCCTHHHHHHHHHHHHHHHHTTSCCCSSSE
T ss_pred EccccchhHHHhHHHHHHcCCeEEEcC-cchhhhhhhhcCcccCceEEEeCCchHHHHHHHHHHHHHHHhhccccCCCCE
Confidence 999999999999999999999999964 333322 2 468999999999999999999999876 8999
Q ss_pred EEEEEecCCcCcchHHHHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCCceEEEEEcc-hhhHHHHHHHHHH
Q 002371 162 VIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY-SRTGLMVFDVAQR 240 (930)
Q Consensus 162 vaii~~d~~~g~~~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~-~~~~~~~~~~a~~ 240 (930)
|++|++|++||+...+.|++.+++.|++|+..+.++.+ ..|++.++++|++.++|+|++.+. +.++..+++++++
T Consensus 167 vail~~~~~~g~~~~~~~~~~~~~~g~~vv~~~~~~~~----~~d~~~~l~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~ 242 (419)
T 3h5l_A 167 IAIITGPGIYSVNIANAIRDGAGEYGYDVSLFETVAIP----VSDWGPTLAKLRADPPAVIVVTHFYPQDQALFMNQFMT 242 (419)
T ss_dssp EEEEECSSHHHHHHHHHHHHHGGGGTCEEEEEEECCSS----CSCCHHHHHHHHHSCCSEEEECCCCHHHHHHHHHHHTT
T ss_pred EEEEEcCcchhHHHHHHHHHHHHHcCCeEEEEecCCCC----CccHHHHHHHHHhcCCCEEEEccccCchHHHHHHHHHH
Confidence 99999999999999999999999999999999999877 689999999999999999999866 5789999999999
Q ss_pred cCCCCCceEEEEeCcccccccCCCCCchhhhhcccceEEEEEe-cCCChhhHHHHHHHHhhcCCCCCCC-chhhhHhhHH
Q 002371 241 LGMMDSGYVWIATTWLSTFIDSKSPLSLKTAKSILGALTLRQH-TPDSKRRRDFVSRWNTLSNGSIGLN-PYGLYAYDTV 318 (930)
Q Consensus 241 ~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~-~~~~~~YDav 318 (930)
.|+ ...|+.++++...... ....+..+|++...++ .++++..++|.++|+++|+ ..|. .+++.+|||+
T Consensus 243 ~g~---~~~~~~~~~~~~~~~~-----~~~g~~~~G~~~~~~~~~~~~~~~~~f~~~~~~~~g--~~p~~~~a~~~Yda~ 312 (419)
T 3h5l_A 243 DPT---NSLVYLQYGASLAAFR-----DIAGDNSVGVTYATVLGTLQDEMGDAFAKAYKERYG--DLSSTASGCQTYSAL 312 (419)
T ss_dssp SCC---SCEEEECSGGGSHHHH-----HHHGGGGTTCEEEESSCCCSSHHHHHHHHHHHHHHC--TTSCHHHHHHHHHHH
T ss_pred cCC---CceEEecCCCCcHHHH-----HhhhhhcCceEEeecCCCCCCHHHHHHHHHHHHHhC--CCCCcchhHHHHHHH
Confidence 998 3357777665432111 2345678898776554 4567889999999999997 4454 6899999999
Q ss_pred HHHHHHHHHhhhcCCcceecCCCccCCCCCCcccCCCccccCchHHHHHHHHhccccCcceeEEEccCCCCC--------
Q 002371 319 WMIARALKLFLDQGNTISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLL-------- 390 (930)
Q Consensus 319 ~~la~Al~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~f~G~tG~v~fd~~g~~~-------- 390 (930)
+++++|++++++.... +...++++|+++|++++|+|++|+++||++|+..
T Consensus 313 ~~~~~a~~~a~~~~~~----------------------g~~~~~~~l~~al~~~~~~g~~G~i~f~~~g~~~~~~~~~~~ 370 (419)
T 3h5l_A 313 YAYSIAAALAGGPGAP----------------------YDDVQNKAVADRLRSLIFRGPVGTMRFHADTQSAWSYPTETN 370 (419)
T ss_dssp HHHHHHHHHTTSCCCT----------------------TCHHHHHHHHHHHHHCEEEETTEEEEBCTTTCBBCEETTTCS
T ss_pred HHHHHHHHHhcCCccC----------------------CCccCHHHHHHHHHhCCcccCceEEEECCCCCccccccCccC
Confidence 9999999997542110 1122588999999999999999999999999842
Q ss_pred ----CCcEEEEEeeecCceeEEeEe
Q 002371 391 ----HPSYDIINVIEHGYPQQIGYW 411 (930)
Q Consensus 391 ----~~~y~I~~~~~~~~~~~VG~w 411 (930)
...+.|+|+++++. +.+..|
T Consensus 371 ~~~~~~~~~i~q~q~g~~-~~~~V~ 394 (419)
T 3h5l_A 371 DPSLGMPHIFSQIFDKAE-DGVLIA 394 (419)
T ss_dssp CTTSSEECEEEECCCTTS-CCEEEE
T ss_pred CccccCCceEEEeeCCce-eeEEEC
Confidence 12345777765444 334455
No 19
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A
Probab=100.00 E-value=4.9e-41 Score=373.97 Aligned_cols=345 Identities=14% Similarity=0.123 Sum_probs=302.4
Q ss_pred ceEEEeEEeecCCC---cchHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccCCh
Q 002371 25 EVLNVGAIFSFGTV---NGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSA 101 (930)
Q Consensus 25 ~~I~IG~~~~l~~~---~G~~~~~a~~lAve~iN~~ggil~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~S 101 (930)
++|+||+++|++.. +|.....|+++|++++|++||+. |+++++++.|+++++..+.+.+++|++++|++||||.+|
T Consensus 1 ~~i~IG~~~p~sg~~~~~g~~~~~g~~~a~~~iN~~ggi~-G~~~~l~~~d~~~~~~~~~~~~~~l~~~~v~~iig~~~s 79 (356)
T 3ipc_A 1 MDVVIAVGAPLTGPNAAFGAQIQKGAEQAAKDINAAGGIN-GEQIKIVLGDDVSDPKQGISVANKFVADGVKFVVGHANS 79 (356)
T ss_dssp CCEEEEEEECCSSTTHHHHHHHHHHHHHHHHHHHHTTCBT-TBCEEEEEEECTTCHHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred CeEEEEEeeCCCCcchhhCHHHHHHHHHHHHHHHhcCCCC-CeEEEEEEecCCCCHHHHHHHHHHHHHCCCcEEEcCCCc
Confidence 47999999999854 68889999999999999999994 999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhhhcCCCcEEEeecCCCCCCCCCCCeEEEccCChHHHHHHHHHHHH-HcCCcEEEEEEecCCcCcchHHHHH
Q 002371 102 VMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVS-YFGWGEVIAIFNDDDQGRNGVTALG 180 (930)
Q Consensus 102 ~~~~av~~~~~~~~vp~is~~a~~~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~-~~~w~~vaii~~d~~~g~~~~~~~~ 180 (930)
..+.++++++.+.++|+|++.++++.+++..+||+||+.|++..++.++++++. ++||++|++|+.+++||+...+.++
T Consensus 80 ~~~~~~~~~~~~~~ip~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~iaii~~~~~~~~~~~~~~~ 159 (356)
T 3ipc_A 80 GVSIPASEVYAENGILEITPAATNPVFTERGLWNTFRTCGRDDQQGGIAGKYLADHFKDAKVAIIHDKTPYGQGLADETK 159 (356)
T ss_dssp HHHHHHHHHHHTTTCEEEESSCCCGGGGSSCCTTEEESSCCHHHHHHHHHHHHHHHCTTCCEEEEECSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCeEEecCCCCcHhhcCCCCcEEEecCChHHHHHHHHHHHHHhcCCCEEEEEeCCChHHHHHHHHHH
Confidence 999999999999999999999999888887789999999999999999999765 5699999999999999999999999
Q ss_pred HHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchhhHHHHHHHHHHcCCCCCceEEEEeCcccccc
Q 002371 181 DKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFI 260 (930)
Q Consensus 181 ~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~~~~~~ 260 (930)
+++++.|++++....++.+ ..|+...++++++.+||+|+++++..++..+++++++.|+..+ |++++++....
T Consensus 160 ~~l~~~g~~v~~~~~~~~~----~~d~~~~~~~l~~~~~d~v~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~~~~~~ 232 (356)
T 3ipc_A 160 KAANAAGVTEVMYEGVNVG----DKDFSALISKMKEAGVSIIYWGGLHTEAGLIIRQAADQGLKAK---LVSGDGIVSNE 232 (356)
T ss_dssp HHHHHTTCCCSEEEECCTT----CCCCHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHTCCCE---EEECGGGCSHH
T ss_pred HHHHHcCCEEEEEEeeCCC----CCCHHHHHHHHHhcCCCEEEEccCchHHHHHHHHHHHCCCCCc---EEEeccccCHH
Confidence 9999999999888888766 6788999999999999999999999999999999999998643 67766554321
Q ss_pred cCCCCCchhhhhcccceEEEEEecC-CChhhHHHHHHHHhhcCCCCCCCchhhhHhhHHHHHHHHHHHhhhcCCcceecC
Q 002371 261 DSKSPLSLKTAKSILGALTLRQHTP-DSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARALKLFLDQGNTISFSN 339 (930)
Q Consensus 261 ~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~f~~~~~~~~~~~~~~~~~~~~~YDav~~la~Al~~a~~~~~~~~~~~ 339 (930)
.. ....+..+|++...++.+ ..|..++|.++|+++ + ..|+.+++.+|||++++++|++++...
T Consensus 233 ~~-----~~~g~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~-~--~~p~~~~~~~yda~~~~~~al~~ag~~-------- 296 (356)
T 3ipc_A 233 LA-----SIAGDAVEGTLNTFGPDPTLRPENKELVEKFKAA-G--FNPEAYTLYSYAAMQAIAGAAKAAGSV-------- 296 (356)
T ss_dssp HH-----HHHGGGGTTCEEEESCCGGGCGGGHHHHHHHHHT-T--CCCCTTHHHHHHHHHHHHHHHHHHTCC--------
T ss_pred HH-----HHhhHHhCCEEEEecCCCCCChhHHHHHHHHHHc-C--CCcchhHHHHHHHHHHHHHHHHHhCCC--------
Confidence 11 234466889888776654 468899999999998 5 568889999999999999999997321
Q ss_pred CCccCCCCCCcccCCCccccCchHHHHHHHHhccccCcceeEEEccCCCCCCCcEEEEEeeec--CceeEEeEecCC
Q 002371 340 DTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVIEH--GYPQQIGYWSNY 414 (930)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~f~G~tG~v~fd~~g~~~~~~y~I~~~~~~--~~~~~VG~w~~~ 414 (930)
+++.|+++|++.+|+|++|+++||++|++....|.|++++++ |.|+.+..|.+.
T Consensus 297 ---------------------~~~~~~~~l~~~~~~g~~G~~~f~~~g~~~~~~~~i~~~~~~~~G~~~~~~~~~~~ 352 (356)
T 3ipc_A 297 ---------------------EPEKVAEALKKGSFPTALGEISFDEKGDPKLPGYVMYEWKKGPDGKFTYIQQGSHH 352 (356)
T ss_dssp ---------------------CHHHHHHHHTTCCBCCTTSSBCBCTTSCBCCCCCEEEEEEECTTSSEEEEEC----
T ss_pred ---------------------CHHHHHHHHHhCCCCCcceeeEECCCCCccCCCeEEEEEEECCCCcEEEEeccccc
Confidence 489999999999999999999999999987789999999974 556999988653
No 20
>4gnr_A ABC transporter substrate-binding protein-branche amino acid transport; amino acid-binding protein, surface-exposed protein; HET: MLY; 1.00A {Streptococcus pneumoniae}
Probab=100.00 E-value=5.8e-41 Score=372.83 Aligned_cols=338 Identities=17% Similarity=0.213 Sum_probs=282.8
Q ss_pred CCCceEEEeEEeecCCC---cchHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhc-CcEEEEc
Q 002371 22 LKPEVLNVGAIFSFGTV---NGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMET-DTLAIVG 97 (930)
Q Consensus 22 ~~~~~I~IG~~~~l~~~---~G~~~~~a~~lAve~iN~~ggil~g~~l~l~~~D~~~~~~~a~~~a~~li~~-~v~aiiG 97 (930)
..+++||||+++|+|.. +|...++|+++|+|+||++||++ |++|+++++|++++|..+++++++|+++ +|.+|+|
T Consensus 3 ~~~~tIkIG~~~plsG~~a~~G~~~~~g~~lAv~~iN~~GGi~-Gr~ielv~~D~~~~p~~a~~~a~~li~~~~v~~i~g 81 (353)
T 4gnr_A 3 VEEKTIKIGFNFEESGSLAAYGTAEQKGAQLAVDEINAAGGID-GKQIEVVDKDNKSETAEAASVTTNLVTQSKVSAVVG 81 (353)
T ss_dssp ---CEEEEEEEECCSSTTHHHHHHHHHHHHHHHHHHHHTTCBT-TBEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEEC
T ss_pred CCCCeEEEEEEeCCcCchhHhHHHHHHHHHHHHHHHHhcCCCC-CeEEEEEEecCCCCHHHHHHHHHHHHhhCCceEEec
Confidence 45679999999999854 58899999999999999999997 9999999999999999999999999988 7999999
Q ss_pred cCChhhHHHHHHhhhcCCCcEEEeecCCCCCCCCCCCeEEEccCChHHHHHHHHHHHHHcC-CcEEEEEEec-CCcCcch
Q 002371 98 PQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFG-WGEVIAIFND-DDQGRNG 175 (930)
Q Consensus 98 p~~S~~~~av~~~~~~~~vp~is~~a~~~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~~~-w~~vaii~~d-~~~g~~~ 175 (930)
|.+|..+.++++++++.++|+|+++++++.++. .++|+||+.|++..++.+++.++...+ ++++++++.+ ++||++.
T Consensus 82 ~~~s~~~~a~~~~~~~~~vp~i~~~~~~~~l~~-~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg~~~ 160 (353)
T 4gnr_A 82 PATSGATAAAVANATKAGVPLISPSATQDGLTK-GQDYLFIGTFQDSFQGKIISNYVSEKLNAKKVVLYTDNASDYAKGI 160 (353)
T ss_dssp CCSHHHHHHHHHHHHHTTCCEEESSCCCTTTTT-TCTTEEECSCCHHHHHHHHHHHHHHTSCCSEEEEEEETTCHHHHHH
T ss_pred cccCcccceehhhhhccCcceEeeccccccccc-CCccccccCCCcHHHHHHHHHHHHHhcCCcEEEEEEcCchHHHHHH
Confidence 999999999999999999999999999998875 458999999999999999999987654 5566655554 4688877
Q ss_pred HHHHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchhhHHHHHHHHHHcCCCCCceEEEEeCc
Q 002371 176 VTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTW 255 (930)
Q Consensus 176 ~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~ 255 (930)
.+.+.+ +.|++++..+.++.+ +.|+++++.++++.+||+|++.+.+.++..+++|++++|+..+ ++..++
T Consensus 161 ~~~~~~---~~g~~vv~~~~~~~~----~~d~~~~l~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~ 230 (353)
T 4gnr_A 161 AKSFRE---SYKGEIVADETFVAG----DTDFQAALTKMKGKDFDAIVVPGYYNEAGKIVNQARGMGIDKP---IVGGDG 230 (353)
T ss_dssp HHHHHH---HCCSEEEEEEEECTT----CCCCHHHHHHHHTSCCSEEECCSCHHHHHHHHHHHHHTTCCSC---EEECGG
T ss_pred HHHHHH---HcCCEEEEEEeeCCC----CCCHHHHHHHHHhcCCCEEEEecCcHHHHHHHHHHHHcCCCCc---EEEecc
Confidence 776654 358899999999988 7899999999999999999999999999999999999998654 555554
Q ss_pred ccccccCCCCCchhhhhcccceEEEEEecC---CChhhHHHHHHHHhhcCCCCCCCchhhhHhhHHHHHHHHHHHhhhcC
Q 002371 256 LSTFIDSKSPLSLKTAKSILGALTLRQHTP---DSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARALKLFLDQG 332 (930)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~f~~~~~~~~~~~~~~~~~~~~~YDav~~la~Al~~a~~~~ 332 (930)
+...... .....+..+|.+.+..+.+ .++..++|.++|+++|+ ..|+.+++++|||++++++|++++.
T Consensus 231 ~~~~~~~----~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~g--~~p~~~a~~~Yda~~~la~Ai~~a~--- 301 (353)
T 4gnr_A 231 FNGEEFV----QQATAEKASNIYFISGFSTTVEVSAKAKAFLDAYRAKYN--EEPSTFAALAYDSVHLVANAAKGAK--- 301 (353)
T ss_dssp GCSHHHH----HHHCTTTCCSEEEEESCCSSSSCCHHHHHHHHHHHHHHS--SCCCHHHHHHHHHHHHHHHHHTTCS---
T ss_pred cccchhh----hhhhhhhhcCccccccccCCCCCCHHHHHHHHHHHHHhC--CCCChhHHHHHHHHHHHHHHHhcCC---
Confidence 4432111 0122456778877765543 46788999999999998 6789999999999999999998641
Q ss_pred CcceecCCCccCCCCCCcccCCCccccCchHHHHHHHHhc-cccCcceeEEEccCCCCCCCcEEEEEeeecCceeEEeE
Q 002371 333 NTISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQT-NMTGLSGPIHFNQDRSLLHPSYDIINVIEHGYPQQIGY 410 (930)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~f~G~tG~v~fd~~g~~~~~~y~I~~~~~~~~~~~VG~ 410 (930)
++++++++|+++ +|+|++|+++||++|++ ...+.|++++++.+ +.+..
T Consensus 302 ----------------------------~~~~v~~aL~~~~~~~g~~G~i~f~~~g~~-~~~~~i~~v~~Gk~-~~~~~ 350 (353)
T 4gnr_A 302 ----------------------------NSGEIKDNLAXTKDFEGVTGQTSFDADHNT-VKTAYMMTMNNGKV-EAAEV 350 (353)
T ss_dssp ----------------------------SHHHHHHHHHTCCCEEETTEEECCCTTSCC-CCCEEEEEEETTEE-EEEEE
T ss_pred ----------------------------CHHHHHHHHHhcCCCccCceeEEECCCcCC-cCCeEEEEEECCEE-EEEEE
Confidence 378899999988 59999999999999996 45677899886655 66543
No 21
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=100.00 E-value=2e-40 Score=370.42 Aligned_cols=342 Identities=15% Similarity=0.199 Sum_probs=298.9
Q ss_pred CCceEEEeEEeecCCC---cchHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhc-CcEEEEcc
Q 002371 23 KPEVLNVGAIFSFGTV---NGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMET-DTLAIVGP 98 (930)
Q Consensus 23 ~~~~I~IG~~~~l~~~---~G~~~~~a~~lAve~iN~~ggil~g~~l~l~~~D~~~~~~~a~~~a~~li~~-~v~aiiGp 98 (930)
.+.+++||+++|+|.. +|.....|+++|++++|+ ++ |+++++++.|+++++..+.+.+++|+++ +|++||||
T Consensus 13 ~~~~~~iG~~~plsG~~a~~g~~~~~g~~~a~~~in~---i~-G~~i~l~~~D~~~~~~~~~~~~~~l~~~~~v~~iiG~ 88 (366)
T 3td9_A 13 MRKVVKIAVILPMTGGISAFGRMVWEGIQIAHEEKPT---VL-GEEVELVLLDTRSEKTEAANAAARAIDKEKVLAIIGE 88 (366)
T ss_dssp ---CEEEEEEECCSSTTHHHHHHHHHHHHHHHHHCCE---ET-TEEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEEEC
T ss_pred hcceEEEEEEECCcCcchhcCHHHHHHHHHHHHHhhh---cC-CeEEEEEEecCCCCHHHHHHHHHHHhccCCeEEEEcc
Confidence 4568999999999854 488899999999999999 54 9999999999999999999999999998 59999999
Q ss_pred CChhhHHHHHHhhhcCCCcEEEeecCCCCCCCCCCCeEEEccCChHHHHHHHHHHH-HHcCCcEEEEEEe-cCCcCcchH
Q 002371 99 QSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMV-SYFGWGEVIAIFN-DDDQGRNGV 176 (930)
Q Consensus 99 ~~S~~~~av~~~~~~~~vp~is~~a~~~~ls~~~~~~~fr~~p~~~~~~~ai~~~l-~~~~w~~vaii~~-d~~~g~~~~ 176 (930)
.+|..+.++++++++.++|+|+++++++.+++ .+||+||+.|++..++.++++++ +++||++|++||. +++||....
T Consensus 89 ~~s~~~~~~~~~~~~~~iP~i~~~~~~~~~~~-~~~~~f~~~~~~~~~~~~~~~~l~~~~g~~~iaii~~~~~~~~~~~~ 167 (366)
T 3td9_A 89 VASAHSLAIAPIAEENKVPMVTPASTNPLVTQ-GRKFVSRVCFIDPFQGAAMAVFAYKNLGAKRVVVFTDVEQDYSVGLS 167 (366)
T ss_dssp SSHHHHHHHHHHHHHTTCCEEESSCCCGGGTT-TCSSEEESSCCHHHHHHHHHHHHHHTSCCCEEEEEEETTCHHHHHHH
T ss_pred CCchhHHHHHHHHHhCCCeEEecCCCCccccC-CCCCEEEEeCCcHHHHHHHHHHHHHhcCCcEEEEEEeCCCcHHHHHH
Confidence 99999999999999999999999888887765 57999999999999999999998 5579999999986 789999999
Q ss_pred HHHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchhhHHHHHHHHHHcCCCCCceEEEEeCcc
Q 002371 177 TALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWL 256 (930)
Q Consensus 177 ~~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~~ 256 (930)
+.+++++++.|++++... ++.+ ..|+...++++++.+||+|++.++..++..+++++++.|+.. .|++++++
T Consensus 168 ~~~~~~~~~~G~~v~~~~-~~~~----~~d~~~~~~~l~~~~~d~v~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~~ 239 (366)
T 3td9_A 168 NFFINKFTELGGQVKRVF-FRSG----DQDFSAQLSVAMSFNPDAIYITGYYPEIALISRQARQLGFTG---YILAGDGA 239 (366)
T ss_dssp HHHHHHHHHTTCEEEEEE-ECTT----CCCCHHHHHHHHHTCCSEEEECSCHHHHHHHHHHHHHTTCCS---EEEECGGG
T ss_pred HHHHHHHHHCCCEEEEEE-eCCC----CccHHHHHHHHHhcCCCEEEEccchhHHHHHHHHHHHcCCCc---eEEeeCCc
Confidence 999999999999999888 8766 678899999999999999999999999999999999999864 36776655
Q ss_pred cccccCCCCCchhhhhcccceEEEEEecCC---ChhhHHHHHHHHhhcCCCCCCCchhhhHhhHHHHHHHHHHHhhhcCC
Q 002371 257 STFIDSKSPLSLKTAKSILGALTLRQHTPD---SKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARALKLFLDQGN 333 (930)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~f~~~~~~~~~~~~~~~~~~~~~YDav~~la~Al~~a~~~~~ 333 (930)
...... ....+..+|++....+.|+ .+..++|.++|+++|+ ..|+.+++.+|||++++++|+++++..
T Consensus 240 ~~~~~~-----~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~g--~~p~~~~~~~yda~~~~~~al~~ag~~-- 310 (366)
T 3td9_A 240 DAPELI-----EIGGEAVEGLLFTTHYHPKAASNPVAKKFVEVYKEKYG--KEPAALNALGYDAYMVLLDAIERAGSF-- 310 (366)
T ss_dssp CSTHHH-----HHHGGGGTTCEEEESCCGGGCCSHHHHHHHHHHHHHHS--SCCCHHHHHHHHHHHHHHHHHHHHTSC--
T ss_pred CCHHHH-----HHHhHHhCCeEEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCCchhHHHHHHHHHHHHHHHHHhCCC--
Confidence 432111 3345678999888876655 6789999999999997 568999999999999999999997431
Q ss_pred cceecCCCccCCCCCCcccCCCccccCchHHHHHHHHhcc-ccCcceeEEEccCCCCCCCcEEEEEeeecCceeEEeEec
Q 002371 334 TISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTN-MTGLSGPIHFNQDRSLLHPSYDIINVIEHGYPQQIGYWS 412 (930)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-f~G~tG~v~fd~~g~~~~~~y~I~~~~~~~~~~~VG~w~ 412 (930)
+++.|+++|++++ |+|++|+++||++|++. ..+.|++++++++ +.|+.|+
T Consensus 311 ---------------------------~~~~~~~~l~~~~~~~g~~G~i~f~~~g~~~-~~~~i~~~~~g~~-~~v~~~~ 361 (366)
T 3td9_A 311 ---------------------------DREKIAEEIRKTRNFNGASGIINIDENGDAI-KSVVVNIVKNGSV-DFEAVIN 361 (366)
T ss_dssp ---------------------------CHHHHHHHHTTCCSEEETTEEECBCTTSCBC-CCEEEEEEETTEE-EEEEEEC
T ss_pred ---------------------------CHHHHHHHHHhCCCCcccceeeEECCCCCcc-CceEEEEEECCEE-EEEEecC
Confidence 4899999999998 99999999999999965 5699999987666 9999998
Q ss_pred CCC
Q 002371 413 NYS 415 (930)
Q Consensus 413 ~~~ 415 (930)
+.+
T Consensus 362 ~~~ 364 (366)
T 3td9_A 362 PDD 364 (366)
T ss_dssp GGG
T ss_pred hhh
Confidence 753
No 22
>3i09_A Periplasmic branched-chain amino acid-binding Pro; type I periplasmic binding protein, structural genomics, JOI for structural genomics; HET: MSE CIT; 1.80A {Burkholderia mallei}
Probab=100.00 E-value=6.9e-40 Score=367.38 Aligned_cols=334 Identities=15% Similarity=0.146 Sum_probs=294.8
Q ss_pred CceEEEeEEeecCCC---c-chHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHh-cCcEEEEcc
Q 002371 24 PEVLNVGAIFSFGTV---N-GQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFME-TDTLAIVGP 98 (930)
Q Consensus 24 ~~~I~IG~~~~l~~~---~-G~~~~~a~~lAve~iN~~ggil~g~~l~l~~~D~~~~~~~a~~~a~~li~-~~v~aiiGp 98 (930)
+++|+||+++|++.. + |.....|+++|++++ +||++ |+++++++.|+++++..+.+.+++|++ ++|++||||
T Consensus 2 ~~~i~IG~~~p~sg~~a~~~g~~~~~g~~~A~~~~--~ggi~-G~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~~iiG~ 78 (375)
T 3i09_A 2 ADSVKIGFITDMSGLYADIDGQGGLEAIKMAVADF--GGKVN-GKPIEVVYADHQNKADIAASKAREWMDRGGLDLLVGG 78 (375)
T ss_dssp CSSEEEEEEECSSSTTTTTSHHHHHHHHHHHHHHH--TSEET-TEEEEEEEEECTTCHHHHHHHHHHHHHHSCEEEEEEC
T ss_pred CCCeEEEEEeCCCcccccccCHHHHHHHHHHHHHh--CCCCC-CeEEEEEEecCCCCHHHHHHHHHHHHhhCCCEEEECC
Confidence 468999999999743 4 888999999999999 57775 899999999999999999999999998 699999999
Q ss_pred CChhhHHHHHHhhhcCCCcEEEeecCCCCCCC-CCCCeEEEccCChHHHHHHHHHHHHHcCCcEEEEEEecCCcCcchHH
Q 002371 99 QSAVMAHVLSHLANELQVPLLSFTALDPTLSP-LQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVT 177 (930)
Q Consensus 99 ~~S~~~~av~~~~~~~~vp~is~~a~~~~ls~-~~~~~~fr~~p~~~~~~~ai~~~l~~~~w~~vaii~~d~~~g~~~~~ 177 (930)
.+|..+.++++++++.++|+|+++++++.+++ ..+||+||+.+++..++.++++++.++||++|++|+.|++||+...+
T Consensus 79 ~~s~~~~a~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~g~~~vaii~~~~~~g~~~~~ 158 (375)
T 3i09_A 79 TNSATALSMNQVAAEKKKVYINIGAGADTLTNEQCTPYTVHYAYDTMALAKGTGSAVVKQGGKTWFFLTADYAFGKALEK 158 (375)
T ss_dssp SCHHHHHHHHHHHHHHTCEEEECSCCCGGGGTTTCCTTEEECSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCceEEEeCCCchhhhcccCCCcEEEeeCChHHHHHHHHHHHHHcCCceEEEEecccHHHHHHHH
Confidence 99999999999999999999999999888887 56899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchhhHHHHHHHHHHcCCCCCceEEEEeCccc
Q 002371 178 ALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLS 257 (930)
Q Consensus 178 ~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~~~ 257 (930)
.+++.+++.|++|+..+.++.+ ..|+...+.++++.+||+|++.+...++..++++++++|+..+. .+++.+.+.
T Consensus 159 ~~~~~~~~~G~~v~~~~~~~~~----~~d~~~~l~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~g~~~~~-~i~g~~~~~ 233 (375)
T 3i09_A 159 NTADVVKANGGKVLGEVRHPLS----ASDFSSFLLQAQSSKAQILGLANAGGDTVNAIKAAKEFGITKTM-KLAALLMFI 233 (375)
T ss_dssp HHHHHHHHTTCEEEEEEEECTT----CSCCHHHHHHHHHTCCSEEEEECCHHHHHHHHHHHHHTTGGGTC-EEEESSCCH
T ss_pred HHHHHHHHcCCEEeeeeeCCCC----CccHHHHHHHHHhCCCCEEEEecCchhHHHHHHHHHHcCCCcCc-eEEecccch
Confidence 9999999999999998888877 67899999999999999999999999999999999999998765 444444333
Q ss_pred ccccCCCCCchhhhhcccceEEEEEecCC-ChhhHHHHHHHHhhcCCCCCCCchhhhHhhHHHHHHHHHHHhhhcCCcce
Q 002371 258 TFIDSKSPLSLKTAKSILGALTLRQHTPD-SKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARALKLFLDQGNTIS 336 (930)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~YDav~~la~Al~~a~~~~~~~~ 336 (930)
..+. ....+..+|++...++.++ +|..++|.++|+++|+ ..|+.+++.+|||++++++|++++++.
T Consensus 234 ~~~~------~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~g--~~p~~~a~~~Yda~~~~~~Al~~ag~~----- 300 (375)
T 3i09_A 234 NDVH------ALGLETTQGLVLTDSWYWNRDQASRQWAQRYFAKMK--KMPSSLQAADYSSVTTYLKAVQAAGST----- 300 (375)
T ss_dssp HHHH------HHCHHHHTTCEEEESCCTTSSHHHHHHHHHHHHHHS--SCCCHHHHHHHHHHHHHHHHHHHHTSC-----
T ss_pred hhHh------hhChhhhCCeeeeeeecCCCCHHHHHHHHHHHHHHC--CCCcHHHHHHHHHHHHHHHHHHHhCCC-----
Confidence 2211 1223568898888776554 6889999999999997 678999999999999999999998421
Q ss_pred ecCCCccCCCCCCcccCCCccccCchHHHHHHHHhccccCcceeEEEccCCCCCCCcEEEEEeeecC
Q 002371 337 FSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVIEHG 403 (930)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~f~G~tG~v~fd~~g~~~~~~y~I~~~~~~~ 403 (930)
++++|+++|++++|+|++|.++||++|++. ..+.|+++++++
T Consensus 301 ------------------------~~~~l~~aL~~~~~~~~~G~~~f~~~g~~~-~~~~i~~v~~~~ 342 (375)
T 3i09_A 301 ------------------------DSDKVMAQLKKMKIDDFYAKGYIRTDGSMI-HDMYLMEVKKPS 342 (375)
T ss_dssp ------------------------CHHHHHHHHTTSCEESSSCEEEECTTSBEE-CCEEEEEECCGG
T ss_pred ------------------------CHHHHHHHHhCCCccCCCCceEECCCCCee-eeeEEEEEeccc
Confidence 489999999999999999999999999964 577899998644
No 23
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=100.00 E-value=1.6e-39 Score=362.12 Aligned_cols=344 Identities=15% Similarity=0.130 Sum_probs=299.3
Q ss_pred CceEEEeEEeecCCC---cchHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHH-hcCcEEEEccC
Q 002371 24 PEVLNVGAIFSFGTV---NGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFM-ETDTLAIVGPQ 99 (930)
Q Consensus 24 ~~~I~IG~~~~l~~~---~G~~~~~a~~lAve~iN~~ggil~g~~l~l~~~D~~~~~~~a~~~a~~li-~~~v~aiiGp~ 99 (930)
.++|+||+++|++.. +|.....|+++|++++|++||++ |+++++++.|+++++..+...+++|+ +++|++||||.
T Consensus 2 ~~~i~IG~i~p~sg~~~~~~~~~~~g~~~a~~~~n~~ggi~-G~~~~l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig~~ 80 (358)
T 3hut_A 2 SLALLLGYELPLTGANAAYGRVFQEAARLQLDRFNAAGGVG-GRPVDILYADSRDDADQARTIARAFVDDPRVVGVLGDF 80 (358)
T ss_dssp -CCEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHTTTBT-TBCEEEEEEECTTCHHHHHHHHHHHHHCTTEEEEEECS
T ss_pred CccEEEEEEeccCCchhhcCHHHHHHHHHHHHHHHhhCCCC-CeEEEEEEecCCCCHHHHHHHHHHHhccCCcEEEEcCC
Confidence 368999999999754 57889999999999999999997 99999999999999999999999999 56999999999
Q ss_pred ChhhHHHHHHhhhcCCCcEEEeecCCCCCCCCCCCeEEEccCChHHHHHHHHHHHHHcCCcEEEEEEecCCcCcchHHHH
Q 002371 100 SAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTAL 179 (930)
Q Consensus 100 ~S~~~~av~~~~~~~~vp~is~~a~~~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~~~w~~vaii~~d~~~g~~~~~~~ 179 (930)
+|..+.++++++.+.++|+|+++++++.+++.. ||+||+.|++..++.++++++...||++|++|+.+++||+...+.+
T Consensus 81 ~s~~~~~~~~~~~~~~iP~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~~~~~~~~~~~ 159 (358)
T 3hut_A 81 SSTVSMAAGSIYGKEGMPQLSPTAAHPDYIKIS-PWQFRAITTPAFEGPNNAAWMIGDGFTSVAVIGVTTDWGLSSAQAF 159 (358)
T ss_dssp SHHHHHHHHHHHHHHTCCEEESSCCCGGGTTSC-TTEEESSCCGGGHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHCCCcEEecCCCCcccccCC-CeEEEecCChHHHHHHHHHHHHHcCCCEEEEEecCcHHHHHHHHHH
Confidence 999999999999999999999988888887654 9999999999999999999988889999999999999999999999
Q ss_pred HHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchhhHHHHHHHHHHcCCCCCceEEEEeCccccc
Q 002371 180 GDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTF 259 (930)
Q Consensus 180 ~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~~~~~ 259 (930)
++++++.|++++....++.+ ..++...++++++.+||+|++.+...++..+++++++.|+..+ |++.+++...
T Consensus 160 ~~~l~~~g~~v~~~~~~~~~----~~~~~~~~~~l~~~~~d~i~~~~~~~~a~~~~~~~~~~g~~~p---~~~~~~~~~~ 232 (358)
T 3hut_A 160 RKAFELRGGAVVVNEEVPPG----NRRFDDVIDEIEDEAPQAIYLAMAYEDAAPFLRALRARGSALP---VYGSSALYSP 232 (358)
T ss_dssp HHHHHHTTCEEEEEEEECTT----CCCCHHHHHHHHHHCCSEEEEESCHHHHHHHHHHHHHTTCCCC---EEECGGGCSH
T ss_pred HHHHHHcCCEEEEEEecCCC----CccHHHHHHHHHhcCCCEEEEccCchHHHHHHHHHHHcCCCCc---EEecCcccCH
Confidence 99999999999988888766 6788889999999999999999999999999999999998654 7777655432
Q ss_pred ccCCCCCchhhhhcccceEEEEEecC--CChhhHHHHHHHHhhcCCCCCCCchhhhHhhHHHHHHHHHHHhhhcCCccee
Q 002371 260 IDSKSPLSLKTAKSILGALTLRQHTP--DSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARALKLFLDQGNTISF 337 (930)
Q Consensus 260 ~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~f~~~~~~~~~~~~~~~~~~~~~YDav~~la~Al~~a~~~~~~~~~ 337 (930)
... ....+..+|++...++.+ ..|..++|.++|+++|+ ..|+.+++.+|||++++++|++++...
T Consensus 233 ~~~-----~~~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~--~~p~~~~~~~yda~~~~~~al~~ag~~------ 299 (358)
T 3hut_A 233 KFI-----DLGGPAVEGVRLATAFVLGASDPVVVEFVSAYETLYG--AIPTLFAAHGYDAVGIMLAAVGRAGPE------ 299 (358)
T ss_dssp HHH-----HHHGGGGTTCEEEESCCTTCCSHHHHHHHHHHHHHHS--SCCCHHHHHHHHHHHHHHHHHHHHCTT------
T ss_pred HHH-----HHhHHhhCCeEEEeccCCCCCCHHHHHHHHHHHHHHC--CCCCHHHHHHHHHHHHHHHHHHHhCCC------
Confidence 111 234467899998887765 47889999999999997 578999999999999999999997422
Q ss_pred cCCCccCCCCCCcccCCCccccCchHH-HHHHHHhc-cccCcceeEEEccCCCCCCCcEEEEEeeecCceeEEeEecC
Q 002371 338 SNDTKLNGLGGGTLNLGALSIFDGGKK-FLANILQT-NMTGLSGPIHFNQDRSLLHPSYDIINVIEHGYPQQIGYWSN 413 (930)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~l~~~-~f~G~tG~v~fd~~g~~~~~~y~I~~~~~~~~~~~VG~w~~ 413 (930)
++++ ++++|+++ +|+|++|+++||++|++....+.|++++++.+ +.+....+
T Consensus 300 -----------------------~~~~~~~~~l~~~~~~~g~~G~~~f~~~g~~~~~~~~i~~~~~G~~-~~~~~~~~ 353 (358)
T 3hut_A 300 -----------------------VTRESLRDALAATDRYAGVTGITRFDPETRETTKILTRLVVREGDF-RVIDREGH 353 (358)
T ss_dssp -----------------------CCHHHHHHHHHTCCSEEETTEEEEECTTTCCEEECCEEEEEETTEE-EEC-----
T ss_pred -----------------------ChHHHHHHHHHhcCCCcCCceeeEECCCCCcCCCceEEEEEECCEE-EEeccccc
Confidence 3777 99999999 89999999999999997578899999986555 77765433
No 24
>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A 1z17_A 1z18_A 2liv_A
Probab=100.00 E-value=1.2e-39 Score=361.08 Aligned_cols=339 Identities=14% Similarity=0.163 Sum_probs=293.6
Q ss_pred ceEEEeEEeecCCC---cchHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccCCh
Q 002371 25 EVLNVGAIFSFGTV---NGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSA 101 (930)
Q Consensus 25 ~~I~IG~~~~l~~~---~G~~~~~a~~lAve~iN~~ggil~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~S 101 (930)
++|+||+++|++.. +|.....|+++|+++||++||+ .|++|++++.|+++++..+.+.+++|++++|++||||.+|
T Consensus 1 ~~i~IG~~~p~~g~~~~~~~~~~~g~~~a~~~iN~~ggi-~G~~l~l~~~d~~~~~~~~~~~~~~l~~~~v~~iig~~~s 79 (346)
T 1usg_A 1 DDIKVAVVGAMSGPIAQWGDMEFNGARQAIKDINAKGGI-KGDKLVGVEYDDACDPKQAVAVANKIVNDGIKYVIGHLCS 79 (346)
T ss_dssp CCEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHTTTB-TTBCEEEEEEECTTCHHHHHHHHHHHHHTTCCEEECCSSH
T ss_pred CcEEEEEEeCCCCcchhcCHHHHHHHHHHHHHHHHhCCC-CCeEEEEEEeCCCCCHHHHHHHHHHHHhCCCCEEEcCCCc
Confidence 47999999999754 5778899999999999999999 5999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhhhcCCCcEEEeecCCCCCCCCCCCeEEEccCChHHHHHHHHHHHH-HcCCcEEEEEEecCCcCcchHHHHH
Q 002371 102 VMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVS-YFGWGEVIAIFNDDDQGRNGVTALG 180 (930)
Q Consensus 102 ~~~~av~~~~~~~~vp~is~~a~~~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~-~~~w~~vaii~~d~~~g~~~~~~~~ 180 (930)
..+.++++++.+.++|+|+++++++.+++..+|++||+.|++..++.++++++. ++||++|++|+.+++||+...+.++
T Consensus 80 ~~~~~~~~~~~~~~ip~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~i~~i~~~~~~~~~~~~~~~ 159 (346)
T 1usg_A 80 SSTQPASDIYEDEGILMISPGATNPELTQRGYQHIMRTAGLDSSQGPTAAKYILETVKPQRIAIIHDKQQYGEGLARSVQ 159 (346)
T ss_dssp HHHHHHHHHHHHHTCEEEECCCCCGGGGSSCCSSEEECSCCGGGHHHHHHHHHHHTTCCSSEEEEECSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCeEEeeCCCChHHhcCCCCcEEeccCChHHHHHHHHHHHHHhcCCCeEEEEECCCchHHHHHHHHH
Confidence 999999999999999999998888877765589999999999999999999985 5799999999999999999999999
Q ss_pred HHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchhhHHHHHHHHHHcCCCCCceEEEEeCcccccc
Q 002371 181 DKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFI 260 (930)
Q Consensus 181 ~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~~~~~~ 260 (930)
+.+++.|++++....++.+ ..|+...++++++.+||+|++.+...++..+++++++.|+..+ |++++++....
T Consensus 160 ~~l~~~g~~v~~~~~~~~~----~~d~~~~~~~l~~~~~d~i~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~~~~~~ 232 (346)
T 1usg_A 160 DGLKAANANVVFFDGITAG----EKDFSALIARLKKENIDFVYYGGYYPEMGQMLRQARSVGLKTQ---FMGPEGVGNAS 232 (346)
T ss_dssp HHHHHTTCCEEEEEECCTT----CCCCHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCE---EEECGGGCCTT
T ss_pred HHHHHcCCEEEEEeccCCC----CcCHHHHHHHHHhcCCCEEEEcCcchHHHHHHHHHHHcCCCCe---EEecCCCCcHH
Confidence 9999999999887777765 5577889999999999999999988889999999999998653 77776654321
Q ss_pred cCCCCCchhhhhcccceEEEEEec-CCChhhHHHHHHHHhhcCCCCCCCchhhhHhhHHHHHHHHHHHhhhcCCcceecC
Q 002371 261 DSKSPLSLKTAKSILGALTLRQHT-PDSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARALKLFLDQGNTISFSN 339 (930)
Q Consensus 261 ~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~YDav~~la~Al~~a~~~~~~~~~~~ 339 (930)
.. ....+..+|++...++. ++.|..++|.++|+++|+ ..|+.+++.+|||++++++|+++++..
T Consensus 233 ~~-----~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~--~~~~~~~~~~yda~~~~~~al~~~g~~-------- 297 (346)
T 1usg_A 233 LS-----NIAGDAAEGMLVTMPKRYDQDPANQGIVDALKADKK--DPSGPYVWITYAAVQSLATALERTGSD-------- 297 (346)
T ss_dssp HH-----HHHGGGGTTCEEEECCCGGGSGGGHHHHHHHHHTTC--CCCCHHHHHHHHHHHHHHHHHHHHCCC--------
T ss_pred HH-----HHhhHhhCCeEEecCCCCCCCHHHHHHHHHHHHHhC--CCCchhHHHHHHHHHHHHHHHHHhCCC--------
Confidence 11 23345678988877653 356788999999999986 567889999999999999999997321
Q ss_pred CCccCCCCCCcccCCCccccCchHHHHHHHHhccccCcceeEEEccCCCCCCCcEEEEEee-ecCceeEE
Q 002371 340 DTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVI-EHGYPQQI 408 (930)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~f~G~tG~v~fd~~g~~~~~~y~I~~~~-~~~~~~~V 408 (930)
++++|+++|++.+|+|++|+++||++|++....|.|++++ ++.+ +.|
T Consensus 298 ---------------------~~~~l~~~l~~~~~~g~~G~i~f~~~g~~~~~~~~i~~~~~~G~~-~~~ 345 (346)
T 1usg_A 298 ---------------------EPLALVKDLKANGANTVIGPLNWDEKGDLKGFDFGVFQWHADGSS-TKA 345 (346)
T ss_dssp ---------------------CHHHHHHHHHHHCEEETTEEECBCTTSSBSSCCCEEEEECTTSCE-EEC
T ss_pred ---------------------CHHHHHHHHHhCCCccceeeeEECCCCCccCCceEEEEEecCCEE-Eec
Confidence 4889999999999999999999999999877889999998 5444 554
No 25
>3n0w_A ABC branched chain amino acid family transporter, periplasmic ligand binding protein...; receptor family ligand binding region; HET: MSE; 1.88A {Burkholderia xenovorans}
Probab=100.00 E-value=1.1e-39 Score=366.11 Aligned_cols=336 Identities=12% Similarity=0.097 Sum_probs=292.2
Q ss_pred CCceEEEeEEeecCC---Cc-chHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHh-cCcEEEEc
Q 002371 23 KPEVLNVGAIFSFGT---VN-GQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFME-TDTLAIVG 97 (930)
Q Consensus 23 ~~~~I~IG~~~~l~~---~~-G~~~~~a~~lAve~iN~~ggil~g~~l~l~~~D~~~~~~~a~~~a~~li~-~~v~aiiG 97 (930)
..++|+||+++|++. .+ |.....|+++|++++ +||++ |+++++++.|+++++..+.+.+++|++ ++|++|||
T Consensus 3 ~~~~i~IG~~~p~sg~~a~~~g~~~~~g~~~a~~~i--~ggi~-G~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~~iiG 79 (379)
T 3n0w_A 3 STGQVTLGVLTDMSSVYADSAGKGSVAAVQLAIEDV--GGKAL-GQPVKLVSADYQMKTDVALSIAREWFDRDGVDAIFD 79 (379)
T ss_dssp ---CCEEEEEECSSSTTTTTSHHHHHHHHHHHHHHT--TTEET-TEECEEEEEECTTCHHHHHHHHHHHHHHSCCCEEEE
T ss_pred CCCcEEEEEEeCCccccccccCHHHHHHHHHHHHHh--cCCCC-CeEEEEEEeCCCCCHHHHHHHHHHHHHhCCceEEEc
Confidence 356899999999974 34 888999999999999 47775 899999999999999999999999998 69999999
Q ss_pred cCChhhHHHHHHhhhcCCCcEEEeecCCCCCCC-CCCCeEEEccCChHHHHHHHHHHHHHcCCcEEEEEEecCCcCcchH
Q 002371 98 PQSAVMAHVLSHLANELQVPLLSFTALDPTLSP-LQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGV 176 (930)
Q Consensus 98 p~~S~~~~av~~~~~~~~vp~is~~a~~~~ls~-~~~~~~fr~~p~~~~~~~ai~~~l~~~~w~~vaii~~d~~~g~~~~ 176 (930)
|.+|..+.++++++++.++|+|+++++++.+++ ..+||+||+.|++..++.++++++.++||++|++|+.|++||+...
T Consensus 80 ~~~s~~~~a~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~g~~~vaii~~~~~~g~~~~ 159 (379)
T 3n0w_A 80 VVNSGTALAINNLVKDKKKLAFITAAAADQIGGTECNGYGIGFLYNFTSIVKTVVQAQLAKGYKTWFLMLPDAAYGDLMN 159 (379)
T ss_dssp CCCHHHHHHHHHHHHHHTCEEEECSCCCTTTTTTTCCSSEEECSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHcCceEEEcCCCchhhhcccCCCcEEEEeCChHHHHHHHHHHHHHcCCcEEEEEecccchhHHHH
Confidence 999999999999999999999999999999987 5689999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchhhHHHHHHHHHHcCCCCCceEEEEeCcc
Q 002371 177 TALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWL 256 (930)
Q Consensus 177 ~~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~~ 256 (930)
+.+++.+++.|++|+..+.++.+ ..|+.+.+.++++.+||+|++.+.+.++..++++++++|+..+.+ ++.+.++
T Consensus 160 ~~~~~~~~~~G~~v~~~~~~~~~----~~d~~~~l~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~ 234 (379)
T 3n0w_A 160 AAIRRELTAGGGQIVGSVRFPFE----TQDFSSYLLQAKASGAQLIVSTSGGAANINIMKQAREFGLPSKTQ-KVGGMID 234 (379)
T ss_dssp HHHHHHHHHHTCEEEEEEEECTT----CCCCHHHHHHHHHHTCSEEEECCCHHHHHHHHHHHHHTTCSCSSC-EEECCBC
T ss_pred HHHHHHHHHcCCEEEEEEeCCCC----CCCHHHHHHHHHHCCCCEEEEecccchHHHHHHHHHHcCCCCCCc-EEEeccc
Confidence 99999999999999998888877 678999999999999999999999999999999999999976643 3444332
Q ss_pred cccccCCCCCchhhhhcccceEEEEEecCC-ChhhHHHHHHHHhhcCCCCCCCchhhhHhhHHHHHHHHHHHhhhcCCcc
Q 002371 257 STFIDSKSPLSLKTAKSILGALTLRQHTPD-SKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARALKLFLDQGNTI 335 (930)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~YDav~~la~Al~~a~~~~~~~ 335 (930)
.... . .....+..+|++...++.++ +|..++|.++|+++|+ ..|+.+++.+|||++++++|++++++.
T Consensus 235 ~~~~-~----~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~g--~~p~~~~~~~Yda~~~~~~Al~~ag~~---- 303 (379)
T 3n0w_A 235 ILTD-V----KSAGLRVMQGQEYATSFYWNMDDRTRAFAKRFYAKMG--KMPTNNQAGGYSAALQYLKAVNAIGSK---- 303 (379)
T ss_dssp CHHH-H----HHHCHHHHTTCEEEESCCTTSSHHHHHHHHHHHHHHS--SCCCHHHHHHHHHHHHHHHHHHHHTCC----
T ss_pred chHH-H----HhhCHHhhCCeEEEeeecCCCCHHHHHHHHHHHHHHC--CCCChHHHHHHHHHHHHHHHHHHhCCC----
Confidence 2211 1 01223568899888776554 6889999999999997 678999999999999999999998421
Q ss_pred eecCCCccCCCCCCcccCCCccccCchHHHHHHHHhccccCccee-EEEccCCCCCCCcEEEEEeeecC
Q 002371 336 SFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGP-IHFNQDRSLLHPSYDIINVIEHG 403 (930)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~f~G~tG~-v~fd~~g~~~~~~y~I~~~~~~~ 403 (930)
++++|+++|++++|+|+.|. ++|+++|++ ...+.|+++++++
T Consensus 304 -------------------------~~~~v~~aL~~~~~~~~~G~~~~f~~~g~~-~~~~~i~~~~~~~ 346 (379)
T 3n0w_A 304 -------------------------DPQKVFAYLKTIKFDDAVTRHGTLRPGGRL-VRDMYLVRAKKPE 346 (379)
T ss_dssp -------------------------CHHHHHHHHTTCCBCSSSCCSBEECTTSBE-ECCEEEEEECCGG
T ss_pred -------------------------CHHHHHHHHhcCCccccCCCceeECCCCCc-ccceEEEEEEchh
Confidence 48999999999999999886 999999986 5678899998654
No 26
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=100.00 E-value=3.8e-40 Score=371.85 Aligned_cols=353 Identities=10% Similarity=0.002 Sum_probs=302.3
Q ss_pred CCceEEEeEEeecCCC---cchHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhc-CcEEEEcc
Q 002371 23 KPEVLNVGAIFSFGTV---NGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMET-DTLAIVGP 98 (930)
Q Consensus 23 ~~~~I~IG~~~~l~~~---~G~~~~~a~~lAve~iN~~ggil~g~~l~l~~~D~~~~~~~a~~~a~~li~~-~v~aiiGp 98 (930)
++++|+||+++|++.. +|.....|+++|+++||++||++ |+++++++.|+++++..+.+.+++|+++ +|++|||
T Consensus 4 a~~~i~IG~~~p~sG~~a~~g~~~~~g~~~a~~~iN~~ggi~-G~~i~l~~~D~~~~~~~~~~~~~~li~~~~V~~iig- 81 (392)
T 3lkb_A 4 GQQQVTLFWSGAITGPTSDAGAPYGAAVEDYCKWANERKLVP-GVVFNCVVRDDQYNNANTQRFFEEAVDRFKIPVFLS- 81 (392)
T ss_dssp CCEEEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHHTSST-TEEEEEEEEECTTCHHHHHHHHHHHHHTTCCSCEEE-
T ss_pred cCCceEEEEEecccCchhhcChhHHHHHHHHHHHHHhcCCcC-CeEeEEEEecCCCCHHHHHHHHHHHHhhcCcEEEEe-
Confidence 4579999999999854 57889999999999999999997 8999999999999999999999999997 9999999
Q ss_pred CChhhHHHHHHhhhcCCCcEEEeecCCCCCCC-CCCCeEEEccCChHHHHHHHHHHHHH-cCCcEEEEEEecCCcCcchH
Q 002371 99 QSAVMAHVLSHLANELQVPLLSFTALDPTLSP-LQYPFFVQTAPNDLYLMSAIAEMVSY-FGWGEVIAIFNDDDQGRNGV 176 (930)
Q Consensus 99 ~~S~~~~av~~~~~~~~vp~is~~a~~~~ls~-~~~~~~fr~~p~~~~~~~ai~~~l~~-~~w~~vaii~~d~~~g~~~~ 176 (930)
.+|..+.++++++++.+||+|+++++++ +.+ ..+||+||+.|++..++.++++++.+ +||++|++|+.+++||+...
T Consensus 82 ~~s~~~~~~~~~~~~~~iP~i~~~~~~~-~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~~g~~~iaii~~~~~~g~~~~ 160 (392)
T 3lkb_A 82 YATGANLQLKPLIQELRIPTIPASMHIE-LIDPPNNDYIFLPTTSYSEQVVALLEYIAREKKGAKVALVVHPSPFGRAPV 160 (392)
T ss_dssp CCHHHHHHHHHHHHHHTCCEEESCCCGG-GGSSSSCTTBCEEECCHHHHHHHHHHHHHHHCTTCEEEEEECSSHHHHTTH
T ss_pred CCcHHHHHHHHHHHhCCceEEecccChh-hccCCCCCceEecCCChHHHHHHHHHHHHHhCCCCEEEEEEeCCchhhhHH
Confidence 6899999999999999999999766544 444 56899999999999999999999877 69999999999999999999
Q ss_pred HHHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchhhHHHHHHHHHHcCCCCCceEEEEeCcc
Q 002371 177 TALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWL 256 (930)
Q Consensus 177 ~~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~~ 256 (930)
+.+++++++.|++++....++.+ ..|+...+.++++.+||+|+++++..++..+++++++.|+.. .|+.++++
T Consensus 161 ~~~~~~l~~~G~~v~~~~~~~~~----~~d~~~~~~~l~~~~~dav~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~~ 233 (392)
T 3lkb_A 161 EDARKAARELGLQIVDVQEVGSG----NLDNTALLKRFEQAGVEYVVHQNVAGPVANILKDAKRLGLKM---RHLGAHYT 233 (392)
T ss_dssp HHHHHHHHHHTCEEEEEEECCTT----CCCCHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCC---EEEECGGG
T ss_pred HHHHHHHHHcCCeEEEEEeeCCC----CcCHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHHHcCCCc---eEEEecCc
Confidence 99999999999999988888876 678999999999999999999999999999999999999864 36666554
Q ss_pred cccccCCCCCchhhhhcccceEEEEEecCC--ChhhHHHHHHHHhhcCCCCCCCch----hhhHhhHHHHHHHHHHHhhh
Q 002371 257 STFIDSKSPLSLKTAKSILGALTLRQHTPD--SKRRRDFVSRWNTLSNGSIGLNPY----GLYAYDTVWMIARALKLFLD 330 (930)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~~~f~~~~~~~~~~~~~~~~~----~~~~YDav~~la~Al~~a~~ 330 (930)
...... ....+..+|++...++.+. .+..++|.++|+++|+ ..|+.+ ++.+|||++++++|++++..
T Consensus 234 ~~~~~~-----~~~g~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~--~~p~~~~~~~~~~~yda~~~~~~al~~ag~ 306 (392)
T 3lkb_A 234 GGPDLI-----ALAGDAAEGFLWATSFYMAHEDTPGIRLQKEIGRKYG--RPENFIESVNYTNGMLAAAIAVEAIRRAQE 306 (392)
T ss_dssp CSHHHH-----HHHGGGGTTCEEEESBCCTTSCCHHHHHHHHHHHHTT--CCHHHHTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHH-----HhhhhhhcCeEEEEeecCCCCCchhHHHHHHHHHHhC--CCcccccchhHHHHHHHHHHHHHHHHHhhc
Confidence 322111 2344678999888876442 4567899999999997 445444 78999999999999999865
Q ss_pred cCCcceecCCCccCCCCCCcccCCCccccCchHHHHHHHHhcc----cc-------CcceeEEEccCCCCCCCcEEEEEe
Q 002371 331 QGNTISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTN----MT-------GLSGPIHFNQDRSLLHPSYDIINV 399 (930)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~----f~-------G~tG~v~fd~~g~~~~~~y~I~~~ 399 (930)
.++. .++++|+++|++++ |+ |++|+++||++|++....+.|+++
T Consensus 307 ~~~~-------------------------~~~~~v~~aL~~~~~~~~~~~~~~~~~G~~G~i~f~~~~~~~~~~~~i~~~ 361 (392)
T 3lkb_A 307 RFKR-------------------------ITNETVYQAIVGMNGPNAFKPGFAVSTKQGVEIDFTKSEHTGAEGLRILEA 361 (392)
T ss_dssp HHSS-------------------------CCHHHHHHHHHTCCGGGCBCCSSBCCCSSSCSBCCCSSCCEEECCBEEEEE
T ss_pred cCCC-------------------------CCHHHHHHHHHhcCCCcCcccccccccccceeeEeCCCCcCCcccEEEEEE
Confidence 2211 14899999999997 98 999999999988766778999999
Q ss_pred eecCceeEEeEecCCCCcc
Q 002371 400 IEHGYPQQIGYWSNYSGLS 418 (930)
Q Consensus 400 ~~~~~~~~VG~w~~~~gl~ 418 (930)
+++++ +.|+.|....++.
T Consensus 362 ~~g~~-~~v~~w~~~~~~~ 379 (392)
T 3lkb_A 362 KGGRF-VPVTEPFTSALFR 379 (392)
T ss_dssp ETTEE-EECSCCBCCHHHH
T ss_pred eCCEE-EEeccccchhHHH
Confidence 87776 9999998776654
No 27
>3n0x_A Possible substrate binding protein of ABC transpo system; receptor family ligand binding region, structural genomics; HET: MSE; 1.50A {Rhodopseudomonas palustris} PDB: 3nnd_B
Probab=100.00 E-value=6.1e-40 Score=367.36 Aligned_cols=333 Identities=14% Similarity=0.101 Sum_probs=278.7
Q ss_pred CceEEEeEEeecCCC---cchHHHHHHHHHHHHHhc-CCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhc-CcEEEEcc
Q 002371 24 PEVLNVGAIFSFGTV---NGQVSRIAMKAAQDDINS-DPRVLGGRKLSITMHDAKFNGFLSIMGALQFMET-DTLAIVGP 98 (930)
Q Consensus 24 ~~~I~IG~~~~l~~~---~G~~~~~a~~lAve~iN~-~ggil~g~~l~l~~~D~~~~~~~a~~~a~~li~~-~v~aiiGp 98 (930)
+++|+||+++|++.. .|...+.|+++|++++|+ .||++ |++|+++++|++++|..++.++++|+++ +|.+||||
T Consensus 2 ~~~i~IG~~~plsG~~a~~g~~~~~g~~lA~~~iN~~~ggi~-G~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~aiiG~ 80 (374)
T 3n0x_A 2 ADDLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLD-GRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAIGT 80 (374)
T ss_dssp --CEEEEEEECCSSTTHHHHHHHHHHHHHHHHHHTTTCCEET-TEEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEEEC
T ss_pred CCCEEEEEecCCCCchhhhCHHHHHHHHHHHHHHhccCCCcC-CEEEEEEEecCCCCHHHHHHHHHHHHHhCCceEEEcC
Confidence 368999999999854 488999999999999998 68885 9999999999999999999999999986 99999999
Q ss_pred CChhhHHHHHHhhhcCCCcEEEeecCCCCCCC-CCCCeEEEccCChHHHHHHHHHHHHHcCCcEEEEEEecCCcCcchHH
Q 002371 99 QSAVMAHVLSHLANELQVPLLSFTALDPTLSP-LQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVT 177 (930)
Q Consensus 99 ~~S~~~~av~~~~~~~~vp~is~~a~~~~ls~-~~~~~~fr~~p~~~~~~~ai~~~l~~~~w~~vaii~~d~~~g~~~~~ 177 (930)
.+|..+.+++++++++++|+|++.++++.+++ ..+||+||+.|++..++.+++.+++++|| +|++|+.|++||+...+
T Consensus 81 ~~s~~~~a~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~fr~~~~~~~~~~~~~~~~~~~~~-~v~ii~~~~~~g~~~~~ 159 (374)
T 3n0x_A 81 SSSAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAIGKQGV-TIATLAQDYAFGRDGVA 159 (374)
T ss_dssp SSHHHHHHHHHHHHHHTCCEEECSCCCGGGGTTTCCTTEEECSCCHHHHHHHHHHHHCCTTE-EEEEEEESSHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCccEEEcCCCchhhhcCCCCCeEEEccCCchhHHHHHHHHHhccCC-EEEEEeCCchHHHHHHH
Confidence 99999999999999999999998888888887 45899999999999999999977888887 89999999999999999
Q ss_pred HHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCC-----ceEEEEEcchhhHHHHHHHHHHcCCCCCceEEEE
Q 002371 178 ALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMME-----ARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIA 252 (930)
Q Consensus 178 ~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~-----~~viv~~~~~~~~~~~~~~a~~~g~~~~~~~~i~ 252 (930)
.|++.+++.|++|+..+.++.+ ..|+++++++|++.+ ||+|++...+... .++++.+.++...++.++.
T Consensus 160 ~~~~~~~~~G~~vv~~~~~~~~----~~d~~~~l~~i~~~~~~~~~~d~v~~~~~g~~~--~~~~~~~~~~~~~g~~~~~ 233 (374)
T 3n0x_A 160 AFKEALAKTGATLATEEYVPTT----TTDFTAVGQRLFDALKDKPGKKIIWVIWAGGGD--PLTKLQDMDPKRYGIELST 233 (374)
T ss_dssp HHHHHHTTTTCEEEEEEEECTT----CCCCHHHHHHHHHHHTTCSSEEEEEECCCSSSC--HHHHHHHTCGGGGTEEEEE
T ss_pred HHHHHHHHcCCEEeeeecCCCC----CccHHHHHHHHHhcCCCCCCCCEEEEEecCCcH--HHHHHHHcchhhcCCeeee
Confidence 9999999999999999999877 779999999999988 9999987443222 3456666666555555544
Q ss_pred eCcccccccCCCCCchhhhhcccceEEEEEe---cCCChhhHHHHHHHHhhcCCCCCCCchhhhHhhHHHHHHHHHHHhh
Q 002371 253 TTWLSTFIDSKSPLSLKTAKSILGALTLRQH---TPDSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARALKLFL 329 (930)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~YDav~~la~Al~~a~ 329 (930)
.+..... ........|+.+...+ .+++|..++|.++|+++|+ ..|+.+++.+|||++++++|+++++
T Consensus 234 ~~~~~~~--------~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~y~~~~g--~~p~~~a~~~Yda~~~l~~Al~~ag 303 (374)
T 3n0x_A 234 GGNILPA--------LAAYKRLPGMEGATYYYYDIPKNPINEWLVTEHQKRFN--APPDFFTAGGFSAAMAVVTAVQKAK 303 (374)
T ss_dssp CCCCTTG--------GGGGGGSTTCEEEESCCTTSCCSHHHHHHHHHHHHHHS--SCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccccchh--------hhhhhhhcCccccceeccCCCCCHHHHHHHHHHHHHHC--CCCChhHHHHHHHHHHHHHHHHHhC
Confidence 3321111 0112345676666543 3567889999999999997 6789999999999999999999984
Q ss_pred hcCCcceecCCCccCCCCCCcccCCCccccCchHHHHHHHHhccccCcceeEEEcc-CCCCCCCcEEEEEeeecCc
Q 002371 330 DQGNTISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQ-DRSLLHPSYDIINVIEHGY 404 (930)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~f~G~tG~v~fd~-~g~~~~~~y~I~~~~~~~~ 404 (930)
+. ++++|+++|++++|+|++|+++||+ +|+ ....+.|++++.++.
T Consensus 304 ~~-----------------------------~~~~v~~aL~~~~~~g~~G~i~f~~~~~~-~~~~~~i~~~~~~~~ 349 (374)
T 3n0x_A 304 ST-----------------------------DTEKLIAAMEGMEFDTPKGKMVFRKEDHQ-ALQSMYHFKVKVDPA 349 (374)
T ss_dssp SC-----------------------------CHHHHHHHHTTCEEEETTEEEEECTTTCB-EECCEEEEEEECCTT
T ss_pred CC-----------------------------CHHHHHHHHhcCCccCCCCCEEECcccCc-cccceEEEEEEeCCC
Confidence 31 4899999999999999999999996 455 567889999986543
No 28
>3eaf_A ABC transporter, substrate binding protein; PSI2, NYSGXRC, substrate binding P structural genomics, protein structure initiative; 2.00A {Aeropyrum pernix}
Probab=100.00 E-value=2.8e-39 Score=364.43 Aligned_cols=349 Identities=14% Similarity=0.157 Sum_probs=293.0
Q ss_pred CceEEEeEEeecCCC---cchHHHHHHHHHHHHHhcCCCCC-CCc--EEEEEEecCCCChHHHHHHHHHHH-hcCcEEEE
Q 002371 24 PEVLNVGAIFSFGTV---NGQVSRIAMKAAQDDINSDPRVL-GGR--KLSITMHDAKFNGFLSIMGALQFM-ETDTLAIV 96 (930)
Q Consensus 24 ~~~I~IG~~~~l~~~---~G~~~~~a~~lAve~iN~~ggil-~g~--~l~l~~~D~~~~~~~a~~~a~~li-~~~v~aii 96 (930)
.++|+||+++|++.. +|.....|+++|+++||++||++ .|+ +|++++.|+++++..+.+.+++|+ +++|++||
T Consensus 2 ~~~i~IG~~~p~sG~~a~~g~~~~~g~~~a~~~iN~~ggi~~~G~~~~l~l~~~D~~~~~~~a~~~~~~li~~~~V~~ii 81 (391)
T 3eaf_A 2 SLTINVGLLVDETGPTSDVGKGYSLGAELAFKYFNEKGIYTKDGVRVNINYIKRDYAYNPTTAEEYYREFRDRYGVIAII 81 (391)
T ss_dssp CEEEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHHCEECTTCCEEEEEEEEEECTTCHHHHHHHHHHHHHTTCCSEEE
T ss_pred CccEEEEEEEcCCCchhhhhHHHHHHHHHHHHHHHHcCCCccCCeEEEEEEEEeCCCCCHHHHHHHHHHHHhhcCcEEEE
Confidence 468999999999854 57889999999999999999994 599 999999999999999999999999 56999999
Q ss_pred ccCChhhHHHHHHhhhcCCCcEEEeecCCCCCCCCCCCeEEEccCChHHHHHHHHHHHHH-cCCcEEEEEEe-cCCcCcc
Q 002371 97 GPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSY-FGWGEVIAIFN-DDDQGRN 174 (930)
Q Consensus 97 Gp~~S~~~~av~~~~~~~~vp~is~~a~~~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~-~~w~~vaii~~-d~~~g~~ 174 (930)
| .+|..+.++++++++.+||+|+++++++ ++ .+||+||+.|++..++.++++++.+ +||++|++|+. |++||+.
T Consensus 82 G-~~s~~~~a~~~~~~~~~iP~i~~~~~~~-~~--~~~~~f~~~~~~~~~~~~~~~~l~~~~g~~~iaii~~~~~~~g~~ 157 (391)
T 3eaf_A 82 G-WGTADTEKLSDQVDTDKITYISASYSAK-LL--VKPFNFYPAPDYSTQACSGLAFLASEFGQGKLALAYDSKVAYSRS 157 (391)
T ss_dssp E-CCHHHHHHHHHHHHHHTCEEEESCCCGG-GT--TSTTEECSSCCHHHHHHHHHHHHHHHHCSEEEEEEECTTCHHHHT
T ss_pred E-cCcHHHHHHHHHHhhcCCeEEecccchh-hc--CCCcEEEeCCCHHHHHHHHHHHHHHhcCCCEEEEEEecCChhHHH
Confidence 9 6899999999999999999999776654 33 6799999999999999999999877 69999999999 9999999
Q ss_pred hHHHHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHH--HhcCCceEEEEEcchhhHHHHHHHHHHcCCCCCceEEEE
Q 002371 175 GVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVK--VRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIA 252 (930)
Q Consensus 175 ~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~--l~~~~~~viv~~~~~~~~~~~~~~a~~~g~~~~~~~~i~ 252 (930)
..+.+++++++.|++++....++.+ ..|+...+.+ +++.+||+|++.+.+.++..+++++++.|+..+ ++.
T Consensus 158 ~~~~~~~~l~~~G~~v~~~~~~~~~----~~d~~~~~~~~~l~~~~~dav~~~~~~~~~~~~~~~~~~~g~~~~---~~~ 230 (391)
T 3eaf_A 158 PIGAIKKAAPSLGLQVVGDYDLPLR----ATEADAERIAREMLAADPDYVWCGNTISSCSLLGRAMAKVGLDAF---LLT 230 (391)
T ss_dssp THHHHHHHTGGGTEEEEEEEECCTT----CCHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHHHHHHTCCCE---EEE
T ss_pred HHHHHHHHHHHcCCceeeeeccCCC----CcCHHHHHHHHHHHHcCCCEEEEecCcHHHHHHHHHHHHCCCCce---EEE
Confidence 9999999999999999998888876 7799999999 999999999999999999999999999998653 455
Q ss_pred eCcccccccCCCCCchhhhhcccc-eEEEEEec-----CCChhhHHHHHHHHhhcC-CCCCCCchhhhHhhHHHHHHHHH
Q 002371 253 TTWLSTFIDSKSPLSLKTAKSILG-ALTLRQHT-----PDSKRRRDFVSRWNTLSN-GSIGLNPYGLYAYDTVWMIARAL 325 (930)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~-----~~~~~~~~f~~~~~~~~~-~~~~~~~~~~~~YDav~~la~Al 325 (930)
+++..+.... ....+..+| ++...++. ++.|. .+|.++|+++|+ ....++.+++.+|||++++++|+
T Consensus 231 ~~~~~~~~~~-----~~~g~~~~g~~~~~~~~~~~~~~~~~~~-~~f~~~~~~~~~~~~p~~~~~~~~~yda~~~l~~Al 304 (391)
T 3eaf_A 231 NVWGFDERSP-----QLIGEGGYGKVFGISPFIYPMFGQDVEG-IQTIFEAARMNGVSEDQINLRVVQGFVNVWLLIKAI 304 (391)
T ss_dssp CGGGCSTTHH-----HHHCGGGTTSEEEEESBCCGGGCTTCHH-HHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHHH
T ss_pred eccCCCHHHH-----HhhhhhccCcEEEEEEecCcccCCCCch-hHHHHHHHHHhCCCCcccccHHHHHHHHHHHHHHHH
Confidence 5433221111 234466899 88777665 34555 689999999996 22223589999999999999999
Q ss_pred HHhhhcCCcceecCCCccCCCCCCcccCCCccccCchHHHHHHHHhcccc--Ccce-eEEEccCCCCCCCcEEEEEe-ee
Q 002371 326 KLFLDQGNTISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMT--GLSG-PIHFNQDRSLLHPSYDIINV-IE 401 (930)
Q Consensus 326 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~f~--G~tG-~v~fd~~g~~~~~~y~I~~~-~~ 401 (930)
+++...+.. .. +++.|.++|++.+|+ |++| +++||+++++....+.|+++ ++
T Consensus 305 ~~a~~~g~~-----------------------~~-~~~~v~~aL~~~~~~~~G~~G~~i~f~~~~~~~~~~~~i~~~~~~ 360 (391)
T 3eaf_A 305 ESVTSQDLQ-----------------------ER-GGEALKEALEANTFDLGGITADTIDYEPGFHLAYRKVFIIKLGEN 360 (391)
T ss_dssp TTSCHHHHH-----------------------HH-THHHHHHHHHHCCBCSTTCBSSCBCCBTTBCCCCCCEEEEEECTT
T ss_pred HHHHhcCCC-----------------------CC-CHHHHHHHHHhCCCCCCCccccceeeCCCCCCcceEEEEEEEecC
Confidence 997211100 01 489999999998898 9999 99999876667788999999 55
Q ss_pred cCceeEEeEecCC
Q 002371 402 HGYPQQIGYWSNY 414 (930)
Q Consensus 402 ~~~~~~VG~w~~~ 414 (930)
+.+ +.|+.|...
T Consensus 361 G~~-~~v~~~~~~ 372 (391)
T 3eaf_A 361 GEL-QLMGKFEAP 372 (391)
T ss_dssp SSE-EEEEEECCC
T ss_pred CEE-EEeeeecCc
Confidence 555 999999654
No 29
>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum}
Probab=100.00 E-value=3.7e-39 Score=359.88 Aligned_cols=343 Identities=10% Similarity=0.101 Sum_probs=295.9
Q ss_pred CceEEEeEEeecCC---CcchHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhc-CcEEEEccC
Q 002371 24 PEVLNVGAIFSFGT---VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMET-DTLAIVGPQ 99 (930)
Q Consensus 24 ~~~I~IG~~~~l~~---~~G~~~~~a~~lAve~iN~~ggil~g~~l~l~~~D~~~~~~~a~~~a~~li~~-~v~aiiGp~ 99 (930)
.++|+||+++|++. .+|.....|+++|++++|++||++ |+++++++.|+++++..+.+.+++|+++ +|++||||.
T Consensus 3 ~~~i~IG~~~p~sG~~~~~g~~~~~g~~~a~~~~N~~ggi~-G~~i~l~~~D~~~~~~~~~~~~~~l~~~~~v~~iig~~ 81 (364)
T 3lop_A 3 LADISVIQSLPLSGSQAVTGRALNAGARLYFDWLNLNGGIN-GETIRLVARDDEQKIEQTVRNVRDMARVDNPVALLTVV 81 (364)
T ss_dssp --CEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHTTTBT-TBCEEEEEEECTTCHHHHHHHHHHHHHHSCEEEEECCC
T ss_pred CCeEEEEEEecCCCcchhccHHHHHHHHHHHHHHHhcCCcC-CeEEEEEEeCCCCCHHHHHHHHHHHHhhcCcEEEEecC
Confidence 46899999999974 457888999999999999999996 8999999999999999999999999996 999999999
Q ss_pred ChhhHHHHHH--hhhcCCCcEEEeecCCCCCCCCCCCeEEEccCChHHHHHHHHHHHHHcCCcEEEEEEecCCcCcchHH
Q 002371 100 SAVMAHVLSH--LANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVT 177 (930)
Q Consensus 100 ~S~~~~av~~--~~~~~~vp~is~~a~~~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~~~w~~vaii~~d~~~g~~~~~ 177 (930)
+|..+.++++ ++.+.+||+|+++++++.+++ +||+||+.|++..++.++++++.++||++|++|+.+++||+...+
T Consensus 82 ~s~~~~~~~~~~~~~~~~iP~v~~~~~~~~~~~--~~~~f~~~~~~~~~~~~~~~~l~~~g~~~iaii~~~~~~g~~~~~ 159 (364)
T 3lop_A 82 GTANVEALMREGVLAEARLPLVGPATGASSMTT--DPLVFPIKASYQQEIDKMITALVTIGVTRIGVLYQEDALGKEAIT 159 (364)
T ss_dssp CHHHHHHHHHTTHHHHHTCCEESCSCCCGGGGS--CTTEECCSCCHHHHHHHHHHHHHHTTCCCEEEEEETTHHHHHHHH
T ss_pred CCHHHHhhCchhhHHhcCCcEEEcccCcHhhcc--CCcEEEeCCChHHHHHHHHHHHHHcCCceEEEEEeCchhhHHHHH
Confidence 9999999999 999999999999888877765 899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchhhHHHHHHHHHHcCCCCCceEEEEeCccc
Q 002371 178 ALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLS 257 (930)
Q Consensus 178 ~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~~~ 257 (930)
.+++++++.|++++..+.++.+ ..|+...++++++.+||+|+++++..++..+++++++.|+..+ |++.+++.
T Consensus 160 ~~~~~~~~~G~~v~~~~~~~~~----~~d~~~~~~~l~~~~~d~v~~~~~~~~a~~~~~~~~~~g~~~~---~i~~~~~~ 232 (364)
T 3lop_A 160 GVERTLKAHALAITAMASYPRN----TANVGPAVDKLLAADVQAIFLGATAEPAAQFVRQYRARGGEAQ---LLGLSSID 232 (364)
T ss_dssp HHHHHHHTTTCCCSEEEEECTT----SCCCHHHHHHHHHSCCSEEEEESCHHHHHHHHHHHHHTTCCCE---EEECTTSC
T ss_pred HHHHHHHHcCCcEEEEEEecCC----CccHHHHHHHHHhCCCCEEEEecCcHHHHHHHHHHHHcCCCCe---EEEeccCC
Confidence 9999999999999888888776 6789999999999999999999999999999999999998654 66666554
Q ss_pred ccccCCCCCchhhh-hcccceEEEEE----ecCCChhhHHHHHHHHhhcCCCCCCCchhhhHhhHHHHHHHHHHHhhhcC
Q 002371 258 TFIDSKSPLSLKTA-KSILGALTLRQ----HTPDSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARALKLFLDQG 332 (930)
Q Consensus 258 ~~~~~~~~~~~~~~-~~~~g~~~~~~----~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~YDav~~la~Al~~a~~~~ 332 (930)
..... .... +..+|++.... +.++.|..++|.++|+++++....|+.+++.+|||++++++|+++++..
T Consensus 233 ~~~~~-----~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~p~~~a~~~yda~~~~~~al~~ag~~- 306 (364)
T 3lop_A 233 PGILQ-----KVAGLDAVRGYSLALVMPNPGKSVNPVIREFNRARAAVGAKDVDLSFRAVEGFVAAKVLAEAIRRAGPK- 306 (364)
T ss_dssp HHHHH-----HHHCHHHHTTCEEEECSCCTTCTTSHHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHHHCSS-
T ss_pred hHHHH-----HHhChhhcCCeEEEEEeCCCCCCCCHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHhCCC-
Confidence 32111 2334 66789887653 2356789999999999998732378999999999999999999997311
Q ss_pred CcceecCCCccCCCCCCcccCCCccccCchHHHHHHHHhc-cccC-cceeEEEccCCCCCCCcEEEEEeeecCceeEEe
Q 002371 333 NTISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQT-NMTG-LSGPIHFNQDRSLLHPSYDIINVIEHGYPQQIG 409 (930)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~f~G-~tG~v~fd~~g~~~~~~y~I~~~~~~~~~~~VG 409 (930)
. +++.|+++|+++ +|+| ++|+++|+++++.......|.+++++++...-|
T Consensus 307 --------------------------~-~~~~v~~aL~~~~~~~~~~~g~i~f~~~~~~~~~~~~i~~~~~~~~~~~~~ 358 (364)
T 3lop_A 307 --------------------------P-TREQVRHALTELRDYDVGGGFTVDFTDRSRPGSHYIELGVVGPNGLVIQEG 358 (364)
T ss_dssp --------------------------C-CHHHHHHHHHTCEEEESSTTCEEECSSTTSCSCCCCEEEEECTTSCEEEC-
T ss_pred --------------------------C-CHHHHHHHHHhcCCccCCCCeeeecCCCCcCCcceEEEEEEcCCCcccccc
Confidence 1 489999999999 6999 999999998877666677888888777634333
No 30
>3qel_B Glutamate [NMDA] receptor subunit epsilon-2; ION channel, allosteric modulation, phenylethanolamine, N-glycosylation, extracellular; HET: NAG BMA MAN FUC QEL; 2.60A {Rattus norvegicus} PDB: 3qem_B* 3jpw_A* 3jpy_A*
Probab=100.00 E-value=3.6e-39 Score=357.22 Aligned_cols=339 Identities=15% Similarity=0.234 Sum_probs=260.7
Q ss_pred CceEEEeEEeecCCCcchHHHHHHHHHHHHHhcCCCCCCCcEEEEEE-ecCCCChHHHHHHHHHHHhc-CcEEEEc-cCC
Q 002371 24 PEVLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITM-HDAKFNGFLSIMGALQFMET-DTLAIVG-PQS 100 (930)
Q Consensus 24 ~~~I~IG~~~~l~~~~G~~~~~a~~lAve~iN~~ggil~g~~l~l~~-~D~~~~~~~a~~~a~~li~~-~v~aiiG-p~~ 100 (930)
+..+.||++|.-++. ..+++-|+++.|.-.. ..++..++ ..+.+||..+..++++++.. +|.|||| |.+
T Consensus 2 ~~~~~v~~~~~~~~~-----~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~dp~~~~~~~C~~l~~~~V~aiIgg~~s 73 (364)
T 3qel_B 2 PPSIGIAVILVGTSD-----EVAIKDAHEKDDFHHL---SVVPRVELVAMNETDPKSIITRICDLMSDRKIQGVVFADDT 73 (364)
T ss_dssp CCEEEEEEEEESSCC-----HHHHTC---------C---CSEEEEEEEEECCCSHHHHHHHHHHHHHHSCEEEEEEEESS
T ss_pred CCceEEEEEEcccch-----hhhhccccCccccccC---CccceEEEEEecCCCHHHHHHHHHHHHHhCCeEEEEecCCC
Confidence 346899999977654 7888899999885542 24666653 34778999999999999976 7989885 555
Q ss_pred hhhHHH--HHHhhhcCCCcEEEeecCCC-CCCC-CCCCeEEEccCChHHHHHHHHHHHHHcCCcEEEEEEecCCcCcchH
Q 002371 101 AVMAHV--LSHLANELQVPLLSFTALDP-TLSP-LQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGV 176 (930)
Q Consensus 101 S~~~~a--v~~~~~~~~vp~is~~a~~~-~ls~-~~~~~~fr~~p~~~~~~~ai~~~l~~~~w~~vaii~~d~~~g~~~~ 176 (930)
+..+.+ ++.+++.++||+||+++++| .+++ .+||||||+.|+|..|+.++++++++|||++|++||+|+ .+.
T Consensus 74 ~~~a~a~~v~~i~~~~~iP~IS~~at~~~~lsd~~~~p~f~Rt~psd~~q~~ai~~ll~~fgW~~V~iI~~d~----~g~ 149 (364)
T 3qel_B 74 DQEAIAQILDFISAQTLTPILGIHGGSSMIMADKDESSMFFQFGPSIEQQASVMLNIMEEYDWYIFSIVTTYF----PGY 149 (364)
T ss_dssp CCTHHHHHHHHHHHHHTCCEEEEEGGGGSCCSSCCTTCCEEESSCCHHHHHHHHHHHHHHTTCCEEEEEEESC----TTH
T ss_pred CchHHHHHHHHHHhccCCCEEEeecCCCCcCCCcccCceEEEcCCChHHHHHHHHHHHHHCCCeEEEEEEeCC----ccH
Confidence 444555 99999999999999999998 8998 679999999999999999999999999999999999984 345
Q ss_pred HHHHHHHHhc--Cc--EEEEEEecCCCCCCChhHHHHHH-HHHhcCCceEEEEEcchhhHHHHHHHHHHcCCCCCceEEE
Q 002371 177 TALGDKLAEI--RC--KISYKSALPPDQSVTETDVRNEL-VKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWI 251 (930)
Q Consensus 177 ~~~~~~l~~~--g~--~i~~~~~~~~~~~~~~~d~~~~l-~~l~~~~~~viv~~~~~~~~~~~~~~a~~~g~~~~~~~~i 251 (930)
+.|.+.+++. |. |+.+...++.. ....++...+ +++++++++|||++++.+++..++++|.++||++++|+||
T Consensus 150 ~~~~~~l~~~~~~~~ici~~~~~i~~~--~~~~~~~~~l~~~i~~~~a~ViIv~~~~~~~~~ll~~a~~~g~~~~~y~wI 227 (364)
T 3qel_B 150 QDFVNKIRSTIENSFVGWELEEVLLLD--MSLDDGDSKIQNQLKKLQSPIILLYCTKEEATYIFEVANSVGLTGYGYTWI 227 (364)
T ss_dssp HHHHHHHHHHHHTCSSCCEEEEEEEEC--TTSCSSSCHHHHHHTTCCCSEEEEESCHHHHHHHHHHHHTTTCSSTTCEEE
T ss_pred HHHHHHHHHHhhccccceEEEEEEccC--CCcccHHHHHHHHHHccCCcEEEEEcCHHHHHHHHHHHHHcCCCCCCeEEE
Confidence 5666666665 54 77666555433 2355778888 6999999999999999999999999999999999999999
Q ss_pred EeCcccccccCCCCCchhhhhcccceEEEEEecCCChhhHHHHHHHHhhcCCCCCCCchhhhHhhHHHHHHHHHHHhhhc
Q 002371 252 ATTWLSTFIDSKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARALKLFLDQ 331 (930)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~YDav~~la~Al~~a~~~ 331 (930)
+++.+....+... .+..+|+++++++. |++ ...+++||||+++|+|++++...
T Consensus 228 ~t~~~~~~~~~~~------~~~~~g~~~~~~~~------------W~~---------~~~~~~yDaV~~~A~A~~~~~~~ 280 (364)
T 3qel_B 228 VPSLVAGDTDTVP------SEFPTGLISVSYDE------------WDY---------GLPARVRDGIAIITTAASDMLSE 280 (364)
T ss_dssp ECHHHHCSTTCCC------TTSCTTCEECCBCT------------TTS---------CHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EecccccCccccc------ccCCCceEEEeecc------------chh---------hHHHHHHHHHHHHHHHHHHHHhc
Confidence 9987643333211 24568898887654 321 24578999999999999998654
Q ss_pred CCcceecCCCccCCCCCCcccCCCcc--ccCchHHHHHHHHhccccCcceeEEEccCCCCCCCcEEEEEee-ecCceeEE
Q 002371 332 GNTISFSNDTKLNGLGGGTLNLGALS--IFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVI-EHGYPQQI 408 (930)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~l~~~~f~G~tG~v~fd~~g~~~~~~y~I~~~~-~~~~~~~V 408 (930)
....+ ....+|.... +|..|..|+++|++++|+|+ +++||++|++.++.|+|+|++ +.++ ++|
T Consensus 281 ~~~i~-----------~~~~~C~~~~~~~~~~G~~l~~~l~~v~f~Gl--~i~F~~~G~~~~~~~~Iinl~~~~~~-~~V 346 (364)
T 3qel_B 281 HSFIP-----------EPKSSCYNTHEKRIYQSNMLNRYLINVTFEGR--DLSFSEDGYQMHPKLVIILLNKERKW-ERV 346 (364)
T ss_dssp TSCCC-----------CCCSCSTTTTTGGGGCCSTTHHHHTCCEETTE--ECCBCTTSSBSSCCEEEEEECTTSCE-EEE
T ss_pred cCCCC-----------CCCCCCCCCCCCccCCHHHHHHHHhhceEeCc--eEEECCCCCcccceEEEEEEcCCCCc-EEE
Confidence 32211 1233454443 56789999999999999998 899999999999999999998 5666 999
Q ss_pred eEecCCCCcc
Q 002371 409 GYWSNYSGLS 418 (930)
Q Consensus 409 G~w~~~~gl~ 418 (930)
|+|++ .||.
T Consensus 347 G~W~~-~~L~ 355 (364)
T 3qel_B 347 GKWKD-KSLQ 355 (364)
T ss_dssp EEECS-SCEE
T ss_pred EEECC-CeEE
Confidence 99984 3444
No 31
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A
Probab=100.00 E-value=1e-38 Score=358.02 Aligned_cols=345 Identities=11% Similarity=0.134 Sum_probs=300.4
Q ss_pred CCCceEEEeEEeecCC---CcchHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhc-CcEEEEc
Q 002371 22 LKPEVLNVGAIFSFGT---VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMET-DTLAIVG 97 (930)
Q Consensus 22 ~~~~~I~IG~~~~l~~---~~G~~~~~a~~lAve~iN~~ggil~g~~l~l~~~D~~~~~~~a~~~a~~li~~-~v~aiiG 97 (930)
++.++|+||+++|++. .+|.....|+++|++++| ||+ +|+++++++.|+++++..+...+++|+++ +|++|||
T Consensus 12 a~~~~i~IG~~~p~sg~~~~~~~~~~~g~~~a~~~~n--g~~-~g~~~~l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig 88 (375)
T 4evq_A 12 AQAGALKVGLLLPYSGTYAPLGEAITRGLELYVQSQG--GKL-GGRSISFVKVDDESAPPKATELTTKLIQSEKADVLIG 88 (375)
T ss_dssp ---CCEEEEEEECSSSTTHHHHHHHHHHHHHHHHHTT--TEE-TTEEEEEEEEECTTCHHHHHHHHHCCCCCSCCSEEEE
T ss_pred hhCCCeEEEEEeCCCCcchhcCHHHHHHHHHHHHHhC--CCc-CCEEEEEEEecCCCCHHHHHHHHHHHHhcCCceEEEc
Confidence 5667999999999975 457889999999999998 665 69999999999999999999999999986 9999999
Q ss_pred cCChhhHHHHHHhhhcCCCcEEEeecCCCCCCC-CCCCeEEEccCChHHHHHHHHHHHHHcCCcEEEEEEecCCcCcchH
Q 002371 98 PQSAVMAHVLSHLANELQVPLLSFTALDPTLSP-LQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGV 176 (930)
Q Consensus 98 p~~S~~~~av~~~~~~~~vp~is~~a~~~~ls~-~~~~~~fr~~p~~~~~~~ai~~~l~~~~w~~vaii~~d~~~g~~~~ 176 (930)
|.+|..+.++++++.+.++|+|+++++++.+++ ..+|++||+.|++..++.++++++.++||++|++|+.++++|+...
T Consensus 89 ~~~s~~~~~~~~~~~~~~iP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~~~~~~~~ 168 (375)
T 4evq_A 89 TVHSGVAMAMVKIAREDGIPTIVPNAGADIITRAMCAPNVFRTSFANGQIGRATGDAMIKAGLKKAVTVTWKYAAGEEMV 168 (375)
T ss_dssp CSSHHHHHHHHHHHHHHCCCEEESSCCCGGGGTTTCCTTEEESSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHH
T ss_pred CCccHHHHHHHHHHHHcCceEEecCCCChhhcccCCCCCEEEeeCChHhHHHHHHHHHHHcCCcEEEEEecCchHHHHHH
Confidence 999999999999999999999999998888887 4589999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchhhHHHHHHHHHHcCCCCCceEEEEeCcc
Q 002371 177 TALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWL 256 (930)
Q Consensus 177 ~~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~~ 256 (930)
+.+++++++.|++++....++.+ ..|+...++++++.+||+|++.++...+..+++++++.|+..+ |++++ +
T Consensus 169 ~~~~~~l~~~G~~v~~~~~~~~~----~~d~~~~~~~l~~~~~dai~~~~~~~~a~~~~~~~~~~g~~vp---~~~~~-~ 240 (375)
T 4evq_A 169 SGFKKSFTAGKGEVVKDITIAFP----DVEFQSALAEIASLKPDCVYAFFSGGGALKFIKDYAAANLGIP---LWGPG-F 240 (375)
T ss_dssp HHHHHHHHHTTCEEEEEEEECTT----CCCCHHHHHHHHHHCCSEEEEECCTHHHHHHHHHHHHTTCCCC---EEEEG-G
T ss_pred HHHHHHHHHcCCeEEEEEecCCC----CccHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHHHcCCCce---EEecC-c
Confidence 99999999999999988888776 6688899999999999999999999999999999999998643 55554 3
Q ss_pred cccccCCCCCchhhhhcccceEEEEEecC--CChhhHHHHHHHHhhcCCCCCCCchhhhHhhHHHHHHHHHHHhhhcCCc
Q 002371 257 STFIDSKSPLSLKTAKSILGALTLRQHTP--DSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARALKLFLDQGNT 334 (930)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~f~~~~~~~~~~~~~~~~~~~~~YDav~~la~Al~~a~~~~~~ 334 (930)
.+. ... ....+..+|++...++.+ +.|..++|.++|+++|+ ..|+.+++.+|||++++++|++++...
T Consensus 241 ~~~-~~~----~~~g~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~--~~p~~~~~~~yda~~~~~~al~~~g~~--- 310 (375)
T 4evq_A 241 LTD-GVE----AAAGPAGDGIKTVLHYVSDLDNAENQAFVKSFEAAYK--IPPDVFAVQGWDAGQLLDAGVKAVGGD--- 310 (375)
T ss_dssp GTT-TTH----HHHGGGGTTCEEEESCCTTCCSHHHHHHHHHHHHHHS--SCCCHHHHHHHHHHHHHHHHHHHTTTC---
T ss_pred CCH-HHH----HhhhhhcCCeEEeeccCCCCCCHHHHHHHHHHHHHHC--CCCcHHHHHHHHHHHHHHHHHHHhCCC---
Confidence 211 110 334567899998877755 46889999999999997 678899999999999999999997321
Q ss_pred ceecCCCccCCCCCCcccCCCccccCchHHHHHHHHhccccCcceeEEEccCCCCCCCcEEEEEeeecCceeEEeEecC
Q 002371 335 ISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVIEHGYPQQIGYWSN 413 (930)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~f~G~tG~v~fd~~g~~~~~~y~I~~~~~~~~~~~VG~w~~ 413 (930)
..+++.|+++|++++|+|++|+++||++|++ ...+.|++++++++ +.|+.+-+
T Consensus 311 ------------------------~~~~~~l~~~l~~~~~~g~~G~i~f~~~g~~-~~~~~i~~~~~g~~-~~v~~~~~ 363 (375)
T 4evq_A 311 ------------------------VAKRKELNAAMAAASFASPRGPFKLSAAHNP-VQNFYLRELKGGKS-VNLGLAAP 363 (375)
T ss_dssp ------------------------TTCHHHHHHHHHTCEEEETTEEEEBCTTSCB-CCCEEEEEEETTEE-EEEEEEEC
T ss_pred ------------------------CCCHHHHHHHHhcCCcccCCcceeECCCCCc-cccEEEEEEECCCc-EEeeehhh
Confidence 1148999999999999999999999999996 56899999998777 99998744
No 32
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=100.00 E-value=1.8e-38 Score=355.04 Aligned_cols=342 Identities=17% Similarity=0.163 Sum_probs=294.3
Q ss_pred CCceEEEeEEeecCCC---cchHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHh-cCcEEEEcc
Q 002371 23 KPEVLNVGAIFSFGTV---NGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFME-TDTLAIVGP 98 (930)
Q Consensus 23 ~~~~I~IG~~~~l~~~---~G~~~~~a~~lAve~iN~~ggil~g~~l~l~~~D~~~~~~~a~~~a~~li~-~~v~aiiGp 98 (930)
++++|+||+++|++.. +|.....|+++|++++|. ++ +|++|++++.|+++++..+...+++|++ ++|++||||
T Consensus 3 a~~~i~IG~~~p~sg~~~~~g~~~~~g~~~a~~~~~~--~i-~G~~i~l~~~D~~~~~~~~~~~~~~li~~~~v~~iiG~ 79 (368)
T 4eyg_A 3 AEDTFKVGLIVPMTGGQASTGKQIDNAIKLYIKKHGD--TV-AGKKIEVILKDDAAIPDNTKRLAQELIVNDKVNVIAGF 79 (368)
T ss_dssp -CCEEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHCS--EE-TTEEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEEEC
T ss_pred CCCcEEEEEEeCCcCcchhccHHHHHHHHHHHHHcCC--CC-CCeEEEEEEeCCCCCHHHHHHHHHHHHhcCCcEEEECC
Confidence 4579999999999854 488899999999999973 35 5999999999999999999999999998 699999999
Q ss_pred CChhhHHHHHHhhhcCCCcEEEeecCCCCCCCCCCCeEEEccCChHHHHHHHHHHHHHcCCcEEEEEEecCCcCcchHHH
Q 002371 99 QSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTA 178 (930)
Q Consensus 99 ~~S~~~~av~~~~~~~~vp~is~~a~~~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~~~w~~vaii~~d~~~g~~~~~~ 178 (930)
.+|..+.++++++.+.++|+|+++++++.+++. +||+||+.|++..++.++++++.++||++|++|+.|+++|+...+.
T Consensus 80 ~~s~~~~~~~~~~~~~~ip~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~~~g~~~~~~ 158 (368)
T 4eyg_A 80 GITPAALAAAPLATQAKVPEIVMAAGTSIITER-SPYIVRTSFTLAQSSIIIGDWAAKNGIKKVATLTSDYAPGNDALAF 158 (368)
T ss_dssp SSHHHHHHHHHHHHHHTCCEEESSCCCGGGGGG-CTTEEESSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHH
T ss_pred CccHHHHHHHHHHHhCCceEEeccCCChhhccC-CCCEEEecCChHHHHHHHHHHHHHcCCCEEEEEecCchHhHHHHHH
Confidence 999999999999999999999998888877765 8999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchhhHHHHHHHHHHcCCCCCceEEEEeCcccc
Q 002371 179 LGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLST 258 (930)
Q Consensus 179 ~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~~~~ 258 (930)
|++.+++.|++++....++.+ ..|+...++++++.+||+|++.+...++..+++++++.|+..+++.|++++++..
T Consensus 159 ~~~~l~~~g~~v~~~~~~~~~----~~d~~~~~~~l~~~~~d~v~~~~~~~~a~~~~~~~~~~g~~~~~v~~~~~~~~~~ 234 (368)
T 4eyg_A 159 FKERFTAGGGEIVEEIKVPLA----NPDFAPFLQRMKDAKPDAMFVFVPAGQGGNFMKQFAERGLDKSGIKVIGPGDVMD 234 (368)
T ss_dssp HHHHHHHTTCEEEEEEEECSS----SCCCHHHHHHHHHHCCSEEEEECCTTCHHHHHHHHHHTTGGGTTCEEEEETTTTC
T ss_pred HHHHHHHcCCEEEEEEeCCCC----CCcHHHHHHHHHhcCCCEEEEeccchHHHHHHHHHHHcCCCcCCceEEecCcccC
Confidence 999999999999998888876 6789999999999999999998888899999999999999766577888875433
Q ss_pred cccCCCCCchhhhhcccceEEEEEecC--CChhhHHHHHHHHhhc-CCCCCCCchhhhHhhHHHHHHHHHHHhhhcCCcc
Q 002371 259 FIDSKSPLSLKTAKSILGALTLRQHTP--DSKRRRDFVSRWNTLS-NGSIGLNPYGLYAYDTVWMIARALKLFLDQGNTI 335 (930)
Q Consensus 259 ~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~f~~~~~~~~-~~~~~~~~~~~~~YDav~~la~Al~~a~~~~~~~ 335 (930)
.... ....+..+|++...++.+ ++|..++|.++| ++| + ..|+.+++.+|||++++++|++++...
T Consensus 235 ~~~~-----~~~g~~~~g~~~~~~~~~~~~~~~~~~f~~~~-~~~~~--~~p~~~~~~~yda~~~~~~al~~~g~~---- 302 (368)
T 4eyg_A 235 DDLL-----NSMGDAALGVVTAHMYSAAHPSAMNKEFVAAY-KKEFG--QRPGFMAVGGYDGIHLVFEALKKTGGK---- 302 (368)
T ss_dssp HHHH-----TTCCGGGTTCEEEESCCTTCCSHHHHHHHHHH-HHHHS--SCCCHHHHHHHHHHHHHHHHHHHTTTC----
T ss_pred HHHH-----HhhhhhhCCeEEeeecCCCCCCHHHHHHHHHH-HHhCC--CCCChHHHHHHHHHHHHHHHHHHhCCC----
Confidence 2111 112356789888877654 468899999999 888 4 578899999999999999999997311
Q ss_pred eecCCCccCCCCCCcccCCCccccCchHHHHHHHHhccccCcceeEEEc-cCCCCCCCcEEEEEee-ecCceeEEe
Q 002371 336 SFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFN-QDRSLLHPSYDIINVI-EHGYPQQIG 409 (930)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~f~G~tG~v~fd-~~g~~~~~~y~I~~~~-~~~~~~~VG 409 (930)
. +++.|+++|++++|+|++|+++|| ++|+ ....+.|.+++ .+|.|+.|.
T Consensus 303 -----------------------~-~~~~l~~al~~~~~~g~~G~i~f~~~~~~-~~~~~~i~~~~~~~G~~~~v~ 353 (368)
T 4eyg_A 303 -----------------------A-DGDSLIAAMKGMKWESPRGPISIDPETRD-IVQNIYIRKVEKVDGELYNIE 353 (368)
T ss_dssp -----------------------C-SHHHHHHHHTTCEEEETTEEEEECTTTCC-EEEEEEEEEEEEETTEEEEEE
T ss_pred -----------------------C-CHHHHHHHHHcCCcccCCCCeEECcccCC-cccceEEEEEEecCCeEEEEE
Confidence 1 489999999999999999999999 6777 46678899997 244434443
No 33
>3sg0_A Extracellular ligand-binding receptor; structural genomics, PSI-biology; HET: 173; 1.20A {Rhodopseudomonas palustris} PDB: 4dqd_A*
Probab=100.00 E-value=1.8e-37 Score=349.29 Aligned_cols=344 Identities=15% Similarity=0.192 Sum_probs=288.1
Q ss_pred CCCceEEEeEEeecCCC---cchHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhc-CcEEEEc
Q 002371 22 LKPEVLNVGAIFSFGTV---NGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMET-DTLAIVG 97 (930)
Q Consensus 22 ~~~~~I~IG~~~~l~~~---~G~~~~~a~~lAve~iN~~ggil~g~~l~l~~~D~~~~~~~a~~~a~~li~~-~v~aiiG 97 (930)
..+++|+||+++|++.. +|.....|+++|++++| |+++++++.|+++++..+.+.+++|+++ +|++|||
T Consensus 23 ~a~~~i~IG~~~p~sg~~~~~g~~~~~g~~~a~~~i~-------G~~i~l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig 95 (386)
T 3sg0_A 23 AAQAEIKIGITMSASGPGAALGQPQSKTVAALPKEIG-------GEKVTYFALDDESDPTKAAQNARKLLSEEKVDVLIG 95 (386)
T ss_dssp --CCCEEEEEEECCSSTTHHHHHHHHHHGGGSCSEET-------TEEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEEC
T ss_pred cCCCceEEEEEeccCCchhhhcHHHHHHHHHHHHHcC-------CEEEEEEEecCCCCHHHHHHHHHHHHhhcCceEEEC
Confidence 45678999999999854 57788999999999983 7999999999999999999999999998 8999999
Q ss_pred cCChhhHHHHHHhhhcCCCcEEEeecCCCCCC--CCCCCeEEEccCChHHHHHHHHHHHHHcCCcEEEEEEecCCcCcch
Q 002371 98 PQSAVMAHVLSHLANELQVPLLSFTALDPTLS--PLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNG 175 (930)
Q Consensus 98 p~~S~~~~av~~~~~~~~vp~is~~a~~~~ls--~~~~~~~fr~~p~~~~~~~ai~~~l~~~~w~~vaii~~d~~~g~~~ 175 (930)
|.+|..+.++++++++.++|+|+++++++.++ ...+||+||+.|++..++.++++++.++||++|++|+.|++||+..
T Consensus 96 ~~~s~~~~~~~~~~~~~~ip~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~~~~~~~ 175 (386)
T 3sg0_A 96 SSLTPVSLPLIDIAAEAKTPLMTMAAAAILVAPMDERRKWVYKVVPNDDIMAEAIGKYIAKTGAKKVGYIGFSDAYGEGY 175 (386)
T ss_dssp CSSHHHHHHHHHHHHHTTCCEEECCCCGGGTCSCCTTGGGEEECSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHH
T ss_pred CCCchhHHHHHHHHHhcCCeEEEecCCCccccccCCCCCcEEecCCCcHHHHHHHHHHHHhcCCCEEEEEecCchHHHHH
Confidence 99999999999999999999999988888777 4568999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchhhHHHHHHHHHHcCCCCCceEEEEeCc
Q 002371 176 VTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTW 255 (930)
Q Consensus 176 ~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~ 255 (930)
.+.+++.+++.|++++..+.++.+ ..|+...++++++.+||+|++.+.+.++..+++++++.|+..+ ++..++
T Consensus 176 ~~~~~~~l~~~g~~v~~~~~~~~~----~~d~~~~~~~~~~~~~dav~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~ 248 (386)
T 3sg0_A 176 YKVLAAAAPKLGFELTTHEVYARS----DASVTGQVLKIIATKPDAVFIASAGTPAVLPQKALRERGFKGA---IYQTHG 248 (386)
T ss_dssp HHHHHHHHHHHTCEECCCEEECTT----CSCCHHHHHHHHHTCCSEEEEECCSGGGHHHHHHHHHTTCCSE---EECCGG
T ss_pred HHHHHHHHHHcCCEEEEEEeeCCC----CCcHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHHHcCCCCc---EEeccc
Confidence 999999999999999877778766 6788999999999999999999998999999999999998743 566555
Q ss_pred ccccccCCCCCchhhhhcccceEEEEEe------cC-CC---hhhHHHHHHHHhhcCCCCCCCchhhhHhhHHHHHHHHH
Q 002371 256 LSTFIDSKSPLSLKTAKSILGALTLRQH------TP-DS---KRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARAL 325 (930)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~------~~-~~---~~~~~f~~~~~~~~~~~~~~~~~~~~~YDav~~la~Al 325 (930)
+...... ....+..+|++....+ .| .. +..++|.++|+++|+. .+|+.+++.+||+++++++|+
T Consensus 249 ~~~~~~~-----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~-~~p~~~~~~~yda~~~~~~al 322 (386)
T 3sg0_A 249 VATEEFI-----KLGGKDVEGAIFAGEAFSGAEDMPADSPFRKVKARFVDAYKAANGG-AAPTIFGVHLWDSMTLVENAI 322 (386)
T ss_dssp GCSHHHH-----HHHGGGGTTCEEEECHHHHGGGSCTTCHHHHHHHHHHHHHHHHTTT-CCCCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHH-----HhhhhhcCCeEEecccccccccCCCCCcchHHHHHHHHHHHHHhCC-CCCChhHHHHHHHHHHHHHHH
Confidence 4432111 2345678898876642 12 22 4579999999999972 267899999999999999999
Q ss_pred HHhhhcCCcceecCCCccCCCCCCcccCCCccccCchHHHHHHHHhc-cccCcceeEEEccCCCC--CCCcEEEEEeeec
Q 002371 326 KLFLDQGNTISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQT-NMTGLSGPIHFNQDRSL--LHPSYDIINVIEH 402 (930)
Q Consensus 326 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~f~G~tG~v~fd~~g~~--~~~~y~I~~~~~~ 402 (930)
+++.+.... +...+++.|+++|+++ +|+|++|+++|+++++. ....+.|++++++
T Consensus 323 ~~a~~~~~~----------------------g~~~~~~~~~~al~~~~~~~g~~G~~~f~~~~~~g~~~~~~~i~~~~~G 380 (386)
T 3sg0_A 323 PAALKAAKP----------------------GTPEFRAAIRDQIEKSKDLALNNGLSNMTPDNHNGYDERSAFLIEIRDG 380 (386)
T ss_dssp HHHHHHCCT----------------------TSHHHHHHHHHHHTTCCSEEETTEEECCCSSCSSCCCGGGCEEEEEETT
T ss_pred HHhhhccCC----------------------CCcchHHHHHHHHHhccCccccceeEEECCCcCCCCCCCceEEEEEECC
Confidence 998654210 0112478999999999 89999999999876443 2456889999876
Q ss_pred CceeEE
Q 002371 403 GYPQQI 408 (930)
Q Consensus 403 ~~~~~V 408 (930)
.+ +.+
T Consensus 381 ~~-~~~ 385 (386)
T 3sg0_A 381 AF-RLK 385 (386)
T ss_dssp EE-EEC
T ss_pred EE-Eec
Confidence 65 544
No 34
>1pea_A Amidase operon; gene regulator, receptor, binding protein; 2.10A {Pseudomonas aeruginosa} SCOP: c.93.1.1 PDB: 1qo0_A 1qnl_A
Probab=100.00 E-value=1.2e-35 Score=333.90 Aligned_cols=347 Identities=13% Similarity=0.062 Sum_probs=285.4
Q ss_pred CCceEEEeEEeecCCC---cchHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHh-cCcEEEEcc
Q 002371 23 KPEVLNVGAIFSFGTV---NGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFME-TDTLAIVGP 98 (930)
Q Consensus 23 ~~~~I~IG~~~~l~~~---~G~~~~~a~~lAve~iN~~ggil~g~~l~l~~~D~~~~~~~a~~~a~~li~-~~v~aiiGp 98 (930)
.+++++||+++|++.. +|.....|+++|++++|++||++ |+++++++.|+++++..+...+++|++ ++|++|||+
T Consensus 4 ~~~~~~IG~~~p~sg~~~~~~~~~~~g~~~a~~~~N~~ggi~-G~~l~l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig~ 82 (385)
T 1pea_A 4 HQERPLIGLLFSETGVTADIERSQRYGALLAVEQLNREGGVG-GRPIETLSQDPGGDPDRYRLCAEDFIRNRGVRFLVGC 82 (385)
T ss_dssp ----CEEEEECCSSSTTHHHHHHHHHHHHHHHHHHHTTTTBT-TBCCEEEEECCTTCHHHHHHHHHHHHHTTCCCEEEEC
T ss_pred CCCCeEEEEEECCCCcchhcCHHHHHHHHHHHHHhccccCCC-CeEEEEEEeCCCCCHHHHHHHHHHHHhhCCcEEEECC
Confidence 3568999999999743 67888999999999999999997 899999999999999999999999997 699999999
Q ss_pred CChhhHHHHHHhhhcCCCcEEEeecCCCCCCCCCCCeEEEccCChHHHHHHHHHHHHHcCCcEEEEEEecCCcCcchHHH
Q 002371 99 QSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTA 178 (930)
Q Consensus 99 ~~S~~~~av~~~~~~~~vp~is~~a~~~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~~~w~~vaii~~d~~~g~~~~~~ 178 (930)
.+|..+.++.+++.+.++|+|+++++.. ...++++||+.+++..++..+++++.+.||++|++|+.++.||+...+.
T Consensus 83 ~~s~~~~~~~~~~~~~~iP~v~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~~~~~~~~~~ 159 (385)
T 1pea_A 83 YMSHTRKAVMPVVERADALLCYPTPYEG---FEYSPNIVYGGPAPNQNSAPLAAYLIRHYGERVVFIGSDYIYPRESNHV 159 (385)
T ss_dssp CSHHHHHHHHHHHHHTTCEEEECSCCCC---CCCCTTEEECSCCGGGTHHHHHHHHHTTTCSEEEEEEESSHHHHHHHHH
T ss_pred CchHHHHHHHHHHHhcCceEEECCcccC---ccCCCCEEEecCChHHhHHHHHHHHHHccCcEEEEEeCCChHHHHHHHH
Confidence 9998889999999999999999765421 1246899999999999999999999999999999999998999999999
Q ss_pred HHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchhhHHHHHHHHHHcCCCCCceEEEEeCcccc
Q 002371 179 LGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLST 258 (930)
Q Consensus 179 ~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~~~~ 258 (930)
+++++++.|++++....++.. ....++...++++++.+||+|++.+....+..+++++++.|+..+.+.++..++...
T Consensus 160 ~~~~l~~~G~~v~~~~~~~~~--~~~~d~~~~~~~l~~~~pdaI~~~~~~~~a~~~~~~~~~~G~~~~~~~~~~~~~~~~ 237 (385)
T 1pea_A 160 MRHLYRQHGGTVLEEIYIPLY--PSDDDLQRAVERIYQARADVVFSTVVGTGTAELYRAIARRYGDGRRPPIASLTTSEA 237 (385)
T ss_dssp HHHHHHHTTCEEEEEEEECSS--CCHHHHHHHHHHHHHHTCSEEEEECCTHHHHHHHHHHHHHHCSSCCCCEEESSCCHH
T ss_pred HHHHHHHcCCEEEEEEeecCC--CCcchHHHHHHHHHHCCCCEEEEecccccHHHHHHHHHHcCCCcCCceEEecccchH
Confidence 999999999999876666652 237899999999998899999998888899999999999998754444554442221
Q ss_pred cccCCCCCchhhhhcccceEEEEEec--CCChhhHHHHHHHHhhcCCCCCCCchhhhHhhHHHHHHHHHHHhhhcCCcce
Q 002371 259 FIDSKSPLSLKTAKSILGALTLRQHT--PDSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARALKLFLDQGNTIS 336 (930)
Q Consensus 259 ~~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~YDav~~la~Al~~a~~~~~~~~ 336 (930)
.+.. ...+..+|++...++. .++|..++|.++|+++|+....++.+++.+|||++++++|+++++..
T Consensus 238 ~~~~------~~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~g~~~~~~~~~~~~yda~~~~~~Al~~ag~~----- 306 (385)
T 1pea_A 238 EVAK------MESDVAEGQVVVAPYFSSIDTPASRAFVQACHGFFPENATITAWAEAAYWQTLLLGRAAQAAGNW----- 306 (385)
T ss_dssp HHTT------SCHHHHTTCEEEESCCTTCSSHHHHHHHHHHHTTSCTTCCCCHHHHHHHHHHHHHHHHHHHHTSC-----
T ss_pred HHHh------cCchhhCCeEEecccccccCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHHHHhCCC-----
Confidence 1111 1124678988887665 35788999999999998743457889999999999999999997321
Q ss_pred ecCCCccCCCCCCcccCCCccccCchHHHHHHHHhccccCcceeEEEccCCCCCCCcEEEEEe-eecCceeEEeEe
Q 002371 337 FSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIINV-IEHGYPQQIGYW 411 (930)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~f~G~tG~v~fd~~g~~~~~~y~I~~~-~~~~~~~~VG~w 411 (930)
+++.|+++|++++|+|++|+++||++++.....+.|.++ +++.+ +.|...
T Consensus 307 ------------------------~~~~l~~al~~~~~~g~~G~i~f~~~~~~~~~~~~i~~~~~~g~~-~~v~~~ 357 (385)
T 1pea_A 307 ------------------------RVEDVQRHLYDIDIDAPQGPVRVERQNNHSRLSSRIAEIDARGVF-QVRWQS 357 (385)
T ss_dssp ------------------------CHHHHHHHHTTCCEEETTEEEEECTTTSCEEBCCEEEEECTTSCE-EEEEEC
T ss_pred ------------------------CHHHHHHHHhhCcccCCCCCeEEcCCCCccccceEEEEEcCCCcE-EEeecC
Confidence 489999999999999999999999855444667888888 44444 776543
No 35
>3snr_A Extracellular ligand-binding receptor; structural genomics, APC102214, PSI-biology, midwest center structural genomics, MCSG; HET: MSE TYR PHE; 1.49A {Rhodopseudomonas palustris} PDB: 3uk0_A* 3t23_A* 3ukj_A* 4eyo_A* 4eyq_A* 3tx6_A* 4f8j_A* 4fb4_A*
Probab=100.00 E-value=6.5e-36 Score=333.38 Aligned_cols=342 Identities=16% Similarity=0.146 Sum_probs=286.3
Q ss_pred CCCceEEEeEEeecCCC---cchHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhc-CcEEEEc
Q 002371 22 LKPEVLNVGAIFSFGTV---NGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMET-DTLAIVG 97 (930)
Q Consensus 22 ~~~~~I~IG~~~~l~~~---~G~~~~~a~~lAve~iN~~ggil~g~~l~l~~~D~~~~~~~a~~~a~~li~~-~v~aiiG 97 (930)
+.+++|+||+++|++.. +|.....|+++|++++| |+++++++.|+++++..+...+++|+++ +|++|||
T Consensus 3 aa~~~i~IG~~~p~sg~~~~~g~~~~~g~~~a~~~i~-------g~~i~l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig 75 (362)
T 3snr_A 3 AETNEITVGISVTTTGPAAALGIPERNALEFVVKEIS-------GHPIKIIVLDDGGDPTAATTNARRFVTESKADVIMG 75 (362)
T ss_dssp -CCCCEEEEEEECCSSTTHHHHHHHHHGGGGSCSEET-------TEEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEEE
T ss_pred CCCCCeEEEEEecccCchhhcCHHHHHHHHHHHHHhC-------CeEEEEEEecCCCCHHHHHHHHHHHHhccCceEEEc
Confidence 35578999999999854 57788999999999983 7999999999999999999999999998 8999999
Q ss_pred cCChhhHHHHHHhhhcCCCcEEEeecCCCCCCCCCCCeEEEccCChHHHHHHHHHHHHHcCCcEEEEEEecCCcCcchHH
Q 002371 98 PQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVT 177 (930)
Q Consensus 98 p~~S~~~~av~~~~~~~~vp~is~~a~~~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~~~w~~vaii~~d~~~g~~~~~ 177 (930)
|.+|..+.++.+++.+.++|+|+++++ + +....+|++||+.+++..++.++++++.++||++|++|+.+++||+...+
T Consensus 76 ~~~s~~~~~~~~~~~~~~ip~v~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~~~~~~~~~ 153 (362)
T 3snr_A 76 SSVTPPSVAISNVANEAQIPHIALAPL-P-ITPERAKWSVVMPQPIPIMGKVLYEHMKKNNVKTVGYIGYSDSYGDLWFN 153 (362)
T ss_dssp CSSHHHHHHHHHHHHHHTCCEEESSCC-C-CCTTTTTTEEECSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHcCccEEEecCC-c-cccCCCCcEEecCCChHHHHHHHHHHHHhcCCCEEEEEecCchHHHHHHH
Confidence 999999999999999999999998777 4 33466899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchhhHHHHHHHHHHcCCCCCceEEEEeCccc
Q 002371 178 ALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLS 257 (930)
Q Consensus 178 ~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~~~ 257 (930)
.+++++++.|++++....++.+ ..++...+.++++.+||+|++++....+..+++++++.|+..+ ++...++.
T Consensus 154 ~~~~~l~~~g~~v~~~~~~~~~----~~~~~~~~~~l~~~~~dav~~~~~~~~a~~~~~~~~~~g~~~p---~i~~~g~~ 226 (362)
T 3snr_A 154 DLKKQGEAMGLKIVGEERFARP----DTSVAGQALKLVAANPDAILVGASGTAAALPQTTLRERGYNGL---IYQTHGAA 226 (362)
T ss_dssp HHHHHHHHTTCEEEEEEEECTT----CSCCHHHHHHHHHHCCSEEEEECCHHHHHHHHHHHHHTTCCSE---EEECGGGC
T ss_pred HHHHHHHHcCCEEEEEeecCCC----CCCHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHHHcCCCcc---EEeccCcC
Confidence 9999999999999988888776 6788899999999999999999989999999999999998654 46655544
Q ss_pred ccccCCCCCchhhhhcccceEEEEEe----------cCCChhhHHHHHHHHhhcCCCCCCCchhhhHhhHHHHHHHHHHH
Q 002371 258 TFIDSKSPLSLKTAKSILGALTLRQH----------TPDSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARALKL 327 (930)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~g~~~~~~~----------~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~YDav~~la~Al~~ 327 (930)
+.... ....+..+|++....+ .|..+..++|.++|+++|+. ..|+.+++.+|||++++++|+++
T Consensus 227 ~~~~~-----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~-~~p~~~~~~~yda~~~~~~al~~ 300 (362)
T 3snr_A 227 SMDFI-----RIAGKSAEGVLMASGPVMDPEGQDDTALTKKPGMALVKVYEEKYGP-SSRSQFAGHSYDAFKVLERVVPV 300 (362)
T ss_dssp SHHHH-----HHHGGGGTTCEEEECGGGCSTTSCTTCTTHHHHHHHHHHHHHHHCT-TCCCHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHH-----HHhHHHhCCCEEecccccccccCCCcCcccHHHHHHHHHHHHHhCC-CCCCchhHhHHHHHHHHHHHHHH
Confidence 32111 2345678898877642 12345689999999999972 26789999999999999999999
Q ss_pred hhhcCCcceecCCCccCCCCCCcccCCCccccCchHHHHHHHHhc-cccCcceeEEEccCCCC--CCCcEEEEEeeecCc
Q 002371 328 FLDQGNTISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQT-NMTGLSGPIHFNQDRSL--LHPSYDIINVIEHGY 404 (930)
Q Consensus 328 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~f~G~tG~v~fd~~g~~--~~~~y~I~~~~~~~~ 404 (930)
+.+.... +...+++.|+++|+++ +|+|++|+++|+++++. ....+.|++++++++
T Consensus 301 a~~~~~~----------------------g~~~~~~~~~~al~~~~~~~g~~G~~~f~~~~~~g~~~~~~~i~~~~~G~~ 358 (362)
T 3snr_A 301 ALKKAKP----------------------GTQEFREALREAFLTEKDIAASQGVYNFTETDRYGLDDRSRILLTVKNGKY 358 (362)
T ss_dssp HHHHCCT----------------------TSHHHHHHHHHHHHHCCCEECSSCEECCCSSCSSCCCGGGCEEEEEETTEE
T ss_pred hhccccC----------------------CCcchHHHHHHHHHhcCCcccceeeEEeCCCCCCCCCCCCeEEEEEECCEE
Confidence 8654210 0112478999999999 89999999999987432 345689999987665
Q ss_pred eeEE
Q 002371 405 PQQI 408 (930)
Q Consensus 405 ~~~V 408 (930)
+.|
T Consensus 359 -~~v 361 (362)
T 3snr_A 359 -VIV 361 (362)
T ss_dssp -EEC
T ss_pred -EEc
Confidence 543
No 36
>2h4a_A YRAM (HI1655); perplasmic binding protein, lipoprotein; 1.35A {Haemophilus influenzae} PDB: 3ckm_A
Probab=99.97 E-value=5.2e-31 Score=285.10 Aligned_cols=307 Identities=10% Similarity=0.060 Sum_probs=247.3
Q ss_pred EEeEEeecCC---CcchHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccCChhhH
Q 002371 28 NVGAIFSFGT---VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVMA 104 (930)
Q Consensus 28 ~IG~~~~l~~---~~G~~~~~a~~lAve~iN~~ggil~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~S~~~ 104 (930)
|||+++|+|. .+|...++|+++|. .|++++++++||++++ +..++++|++++|.+||||.+|+.+
T Consensus 2 kIG~llplSG~~a~~G~~~~~G~~lA~----------~G~~i~l~~~D~~~~~--a~~~~~~l~~~~v~~IiGp~~s~~~ 69 (325)
T 2h4a_A 2 QIGLLLPLSGDGQILGTTIQSGFNDAK----------GNSTIPVQVFDTSMNS--VQDIIAQAKQAGIKTLVGPLLKQNL 69 (325)
T ss_dssp CEEEEECCSSTTHHHHHHHHHHHHHHH----------TTCCSCEEEEETTTSC--HHHHHHHHHHTTCCEEECCCSHHHH
T ss_pred cEEEEECCCCccHHHHHHHHHHHHHhc----------cCCCceEEEEECCCCh--HHHHHHHHHHCCCCEEEeeCCHHHH
Confidence 7999999984 45999999999986 2789999999999998 6778889998899999999999999
Q ss_pred HHHHHhh-hcCCCcEEEeecCCCCCCCCCCCeEEEccCChHHHHHHHHHHHHHcCCcEEEEEEecCCcCcchHHHHHHHH
Q 002371 105 HVLSHLA-NELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKL 183 (930)
Q Consensus 105 ~av~~~~-~~~~vp~is~~a~~~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~~~w~~vaii~~d~~~g~~~~~~~~~~l 183 (930)
.++++++ .+.+||+|++++++. .....+.|+||+.|. .++.++++++...|.|++++|+.+++||++..+.|++++
T Consensus 70 ~a~~~~~~~~~~vp~i~~~~~~~-~~~~~~~~~f~~~~~--~~~~~~a~~a~~~g~k~vail~~~~~yG~~~~~~F~~~~ 146 (325)
T 2h4a_A 70 DVILADPAQIQGMDVLALNATPN-SRAIPQLCYYGLSPE--DEAESAANKMWNDGVRNPLVAMPQNDLGQRVGNAFNVRW 146 (325)
T ss_dssp HHHHHCGGGGTTCEEEESCCCSS-CCCCTTEEECCCCHH--HHHHHHHHHHHHTTCCSCEEEEESSHHHHHHHHHHHHHH
T ss_pred HHHHhhhhccCCCcEEECCCCcc-ccCCCCeEEEECCHH--HHHHHHHHHHHHcCCCeEEEEEcCCcHHHHHHHHHHHHH
Confidence 9999999 789999999876543 333345677776554 578999999988999999999999999999999999999
Q ss_pred HhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchhhHHHHHHHHHHcCCCCCceEEEEeCccc--cccc
Q 002371 184 AEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLS--TFID 261 (930)
Q Consensus 184 ~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~~~--~~~~ 261 (930)
++.|++|+..+.++.+ .|+...|++++ .+||+|++.+++.++..+.++++..|... .++.++++. +...
T Consensus 147 ~~~Gg~vv~~~~y~~~-----~d~~~~l~~i~-~~pDaV~~~~~~~~~~~i~~~~~~~g~~~---pl~~~~~~~~~s~~~ 217 (325)
T 2h4a_A 147 QQLAGTDANIRYYNLP-----ADVTYFVQENN-SNTTALYAVASPTELAEXKGYLTNIVPNL---AIYASSRASASATNT 217 (325)
T ss_dssp HHHHSSCCEEEEESST-----THHHHHHHHST-TCCCEEEECCCHHHHHHHHHHHTTTCTTC---EEEECGGGCCHHHHT
T ss_pred HHcCCCcceeEecCCH-----HHHHHHHHhcC-CCCCEEEEeCCHHHHhhhhhhHhhcCCCC---CEEEeccccccCCCC
Confidence 9999999999888754 59999999994 89999999999999999999988776533 466776665 2211
Q ss_pred CCCCCchhhhhcccceEEEE-Ee--cCCChhhHHHHHHHHhhcCCCCCCCchhhhHhhHHHHHHHHHHHhhhcCCcceec
Q 002371 262 SKSPLSLKTAKSILGALTLR-QH--TPDSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARALKLFLDQGNTISFS 338 (930)
Q Consensus 262 ~~~~~~~~~~~~~~g~~~~~-~~--~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~YDav~~la~Al~~a~~~~~~~~~~ 338 (930)
. ......++|++... |+ .++.+..++|.++|++.+ .|..+.+.+|||+.++.++ .++
T Consensus 218 ~-----~~~~~~~~Gv~f~~~p~~~~~~~~~~~~f~~~~~~~~----~~~rl~AlgyDA~~l~~~l-~~l---------- 277 (325)
T 2h4a_A 218 N-----TDFIAQMNGVQFSDIPFFKDTNSPQYQKLAKSTGGEY----QLMRLYAMGADAWLLINQF-NEL---------- 277 (325)
T ss_dssp C-----HHHHHHTTTCEEEECGGGSCCCSHHHHHHHHHTTTCH----HHHHHHHHHHHHHHHHHTH-HHH----------
T ss_pred C-----chhhhhcCCcEEEccccccCCCcHHHHHHHhccCCCc----chHHHHHHHHHHHHHHHHH-HHH----------
Confidence 1 34557789987665 44 345677888988887554 2556679999999986653 221
Q ss_pred CCCccCCCCCCcccCCCccccCchHHHHHHHHhccccCcceeEEEccCCCCCCCcEEEEEeeecCceeEE
Q 002371 339 NDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVIEHGYPQQI 408 (930)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~f~G~tG~v~fd~~g~~~~~~y~I~~~~~~~~~~~V 408 (930)
+.+.+.+|+|+||.++||++|+ ......+.+++++.. +.|
T Consensus 278 ----------------------------~~~~~~~~~G~tG~l~~~~~g~-~~R~l~~~~~~~G~~-~~~ 317 (325)
T 2h4a_A 278 ----------------------------RQVPGYRLSGLTGILSADTNCN-VERDMTWYQYQDGAI-VPV 317 (325)
T ss_dssp ----------------------------HHSTTCCEEETTEEEEECTTCB-EEEECEEEEEETTEE-EEC
T ss_pred ----------------------------hhCCCCeeccCceeEEECCCCe-EEEeechhhccCCeE-EEe
Confidence 1133467999999999999998 477788999987766 555
No 37
>3ckm_A YRAM (HI1655), LPOA; periplasmic-binding protein, lipoprotein, unliganded, biosynthetic protein; 1.35A {Haemophilus influenzae} SCOP: c.93.1.1
Probab=99.97 E-value=3.2e-30 Score=282.33 Aligned_cols=313 Identities=10% Similarity=0.036 Sum_probs=244.0
Q ss_pred eEEEeEEeecCCC---cchHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccCChh
Q 002371 26 VLNVGAIFSFGTV---NGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAV 102 (930)
Q Consensus 26 ~I~IG~~~~l~~~---~G~~~~~a~~lAve~iN~~ggil~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~S~ 102 (930)
.+|||+++|+|.. +|+..++|+++|++ |++++++++||+++|..++ ++.+.+++|.+||||.+|+
T Consensus 2 V~kIG~l~PlSG~~a~~G~~~~~g~~lA~~----------g~~i~l~~~D~~~~~~~aa--~~~~~~~~v~~iiGp~~s~ 69 (327)
T 3ckm_A 2 VSQIGLLLPLSGDGQILGTTIQSGFNDAKG----------NSTIPVQVFDTSMNSVQDI--IAQAKQAGIKTLVGPLLKQ 69 (327)
T ss_dssp -CCEEEEECCSSTTHHHHHHHHHHHHHHHT----------TCCSCEEEEETTTSCHHHH--HHHHHHTTCCEEECCCSHH
T ss_pred EEEEEEEECCCCchHHHHHHHHHHHHHhCC----------CCCceEEEEeCCCCHHHHH--HHHHHHcCCeEEEEccccc
Confidence 3799999999854 58899999999962 5789999999999997663 4556667999999999999
Q ss_pred hHHHHHHhhh-cCCCcEEEeecCCCCCCCCCCCeEEEccCChHHHHHHHHHHHHHcCCcEEEEEEecCCcCcchHHHHHH
Q 002371 103 MAHVLSHLAN-ELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGD 181 (930)
Q Consensus 103 ~~~av~~~~~-~~~vp~is~~a~~~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~~~w~~vaii~~d~~~g~~~~~~~~~ 181 (930)
.+.++++... ...+|+++.++++. . ...|++||+.+++..++.++++++...|+|++++++.|++||++..+.|++
T Consensus 70 ~~~a~~~~~~~~~~v~~~~~~~~~~-~--~~~~~~f~~~~~~~~~~~~~a~~~~~~g~k~~~ii~~~~~yg~~~~~~f~~ 146 (327)
T 3ckm_A 70 NLDVILADPAQIQGMDVLALNATPN-S--RAIPQLCYYGLSPEDEAESAANKMWNDGVRNPLVAMPQNDLGQRVGNAFNV 146 (327)
T ss_dssp HHHHHHHCGGGGTTCEEEESCCCTT-C--CCCTTEEECCCCHHHHHHHHHHHHHHTTCCSCEEEEESSHHHHHHHHHHHH
T ss_pred cchhhHHHHHhccCceEeccCcCcc-c--ccCCCeEEEecChHHHHHHHHHHHHhcCCeeEEEEecCChHHHHHHHHHHH
Confidence 9888777655 45566665444332 2 235789999999999999999999999999999999999999999999999
Q ss_pred HHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchhhHHHHHHHHHHcCCCCCceEEEEeCccccccc
Q 002371 182 KLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFID 261 (930)
Q Consensus 182 ~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~~~~~~~ 261 (930)
.+++.|++|+..+.++.. +....+.+++..++|+|++.+++.++..+++++++.|+.. .++.++++.....
T Consensus 147 ~~~~~Gg~vv~~~~~~~~------~~~~~~~~~~~~~~dai~~~~~~~~~~~i~~q~~~~g~~~---~~~~~~~~~~~~~ 217 (327)
T 3ckm_A 147 RWQQLAGTDANIRYYNLP------ADVTYFVQENNSNTTALYAVASPTELAEMKGYLTNIVPNL---AIYASSRASASAT 217 (327)
T ss_dssp HHHHHHSSCCEEEEESST------THHHHHHHHSCTTCCEEEECCCHHHHHHHHHHHTTTCTTC---EEEECGGGCCHHH
T ss_pred HHHHCCCeEEEEEECCCC------chhhHHHHHhccCCcEEEEEcCHHHHHHHHHHHHhhhccC---CEEeeeccccccc
Confidence 999999999999988765 3345678889999999999999999999999999988754 3666665443321
Q ss_pred CCCCCchhhhhcccceEEEEE-e--cCCChhhHHHHHHHHhhcCCCCCCCchhhhHhhHHHHHHHHHHHhhhcCCcceec
Q 002371 262 SKSPLSLKTAKSILGALTLRQ-H--TPDSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARALKLFLDQGNTISFS 338 (930)
Q Consensus 262 ~~~~~~~~~~~~~~g~~~~~~-~--~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~YDav~~la~Al~~a~~~~~~~~~~ 338 (930)
... ......++|++.... + .++.+..++|.++|+++++ +..+.+.+|||+.+++.+.+..
T Consensus 218 ~~~---~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~~----~~~~~AlgyDA~~l~~~l~~~~---------- 280 (327)
T 3ckm_A 218 NTN---TDFIAQMNGVQFSDIPFFKDTNSPQYQKLAKSTGGEYQ----LMRLYAMGADAWLLINQFNELR---------- 280 (327)
T ss_dssp HTC---HHHHHHTTTCEEEECGGGGCCCSHHHHHHHHHTTTCHH----HHHHHHHHHHHHHHHHTHHHHH----------
T ss_pred hhc---chhhhhcCCeEEEcccccCCCCCHHHHHHHHHHHhhcC----CCchHHHHHHHHHHHHHHHHhc----------
Confidence 111 223345677765543 2 4567889999999988875 2336778999998876554432
Q ss_pred CCCccCCCCCCcccCCCccccCchHHHHHHHHhccccCcceeEEEccCCCCCCCcEEEEEeeecCceeEEeE
Q 002371 339 NDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVIEHGYPQQIGY 410 (930)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~f~G~tG~v~fd~~g~~~~~~y~I~~~~~~~~~~~VG~ 410 (930)
.+...+|+|++|.++||++|+ ....+.+.+++++.+ ++|..
T Consensus 281 -----------------------------~~~~~~f~G~tG~i~fd~~G~-~~r~l~~~~~~~G~~-vpv~d 321 (327)
T 3ckm_A 281 -----------------------------QVPGYRLSGLTGILSADTNCN-VERDMTWYQYQDGAI-VPVVD 321 (327)
T ss_dssp -----------------------------HSTTCCEEETTEEEEECTTCB-EEEECEEEEEETTEE-EECC-
T ss_pred -----------------------------CCCCCCceeceEEEEECCCCC-CccccEEEEEECCEE-EEccc
Confidence 123356999999999999998 466788888888776 87763
No 38
>1yae_A Glutamate receptor, ionotropic kainate 2; kainate receptor, membrane protein; HET: NAG FUC DOQ; 3.11A {Rattus norvegicus} SCOP: c.94.1.1
Probab=99.94 E-value=6.9e-27 Score=254.26 Aligned_cols=271 Identities=23% Similarity=0.413 Sum_probs=196.9
Q ss_pred CCcceEEEecCcccccccEEeec------CcceEEEEeHHHHHHHHHHCCCcccEEEEeC---CCCCC-CCCHHHHHHHH
Q 002371 460 NGRQLRIGVPNRVSYRDFVFKVN------GTDIVHGYCIDVFLAAVRLLPYAVPYKFIPY---GDGHK-NPTYSELINQI 529 (930)
Q Consensus 460 ~g~~lrv~v~~~~~~~p~~~~~~------~~~~~~G~~~dll~~l~~~ln~~~~~~~~~~---~~~~~-n~~~~~l~~~l 529 (930)
++++||||+.. ++||.+.++ +++++.|+++||++++++++|++++++..+. |.... +.+|++++.+|
T Consensus 11 ~~~~l~V~~~~---~~P~~~~~~~~~~~~~~g~~~G~~vdl~~~ia~~lg~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l 87 (312)
T 1yae_A 11 SNRSLIVTTIL---EEPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDVNGQWNGMVREL 87 (312)
T ss_dssp CSCEEEEEECC---BTTTBEECCCSSCCCGGGGEESHHHHHHHHHHHHHCCEEEEEECSSCCCCCBCTTTCCBCSHHHHH
T ss_pred cCceEEEEEec---cCCeeEEeccccccCCCceEEEEEHHHHHHHHHHcCCeEEEEecCCCccceeccCCCcchHHHHHH
Confidence 56889999985 488888752 3678999999999999999998877766542 22222 57899999999
Q ss_pred HcCcccEEEecEEEecCccceeeecccccccceEEEEeccC-CCcCcceecccCchhHHHHHHHHHHHHHHhhhheeecc
Q 002371 530 TTGVFDAAVGDIAIVTNRTKAVDFTQPYIESGLVVVAPVRK-LNSSAWAFLRPFTPLMWAVTGVFFLVVGTVVWILEHRL 608 (930)
Q Consensus 530 ~~g~~D~~~~~~~~t~~R~~~vdfs~p~~~~~~~~~v~~~~-~~~~~~~~l~PF~~~vW~~~~~~~~~~~~~~~~~~~~~ 608 (930)
.+|++|++++++++|++|.+.++||.||+.++.+++++++. ...++|.|+.||+..
T Consensus 88 ~~g~~D~~~~~~~~t~eR~~~~~fs~py~~~~~~~~~~~~~~~~~~~~~~~~pf~~~----------------------- 144 (312)
T 1yae_A 88 IDHKADLAVAPLAITYVREKVIDFSKPFMTLGISILYRKPNGTNPGVFSFLNGGSLV----------------------- 144 (312)
T ss_dssp HTTSCSEECSSCBCCHHHHHHEEEEEEEEEECEEEEEEC-----------------------------------------
T ss_pred hCCCcCEEeecceechhhcceEEecceeeecceEEEEeCCccccccceeeecccccC-----------------------
Confidence 99999999999999999999999999999999999999876 567899999999900
Q ss_pred CCCCCCCCcccchhhHHHHHHHhhccccCCcccchhHHHHHHHHHHHHHhhhhhhhhhheeeeeccccCCCCChHHhhhC
Q 002371 609 NDEFRGPPRKQIVTVLWFSFSTMFFAHRENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIDTLMTS 688 (930)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~s 688 (930)
|+ |++++...|++++||...
T Consensus 145 ------------------------------p~------------------------------tv~~~~~~i~~~~dL~g~ 164 (312)
T 1yae_A 145 ------------------------------PR------------------------------GSERMESPIDSADDLAKQ 164 (312)
T ss_dssp ----------------------------------------------------------------------CCSHHHHHTC
T ss_pred ------------------------------Cc------------------------------ccccccCCCCCHHHHhhc
Confidence 10 455666789999999832
Q ss_pred -CCeEEEEeCchhHHHHHHhcCCC-----------ccceEeCCCHHHHHHHHHcCCcEEEEccchhhHHHHhcCcceEEe
Q 002371 689 -NDRVGYQVGSFAENYLIEELSIP-----------KSRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSDHCQFSVR 756 (930)
Q Consensus 689 -~~~i~~~~~s~~~~~l~~~~~~~-----------~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~~~l~~~ 756 (930)
+.+||+..++....++.+. ... ..+++.+++.++++++|.+|+ ||++.+...+.|++++.|++.++
T Consensus 165 ~~~~vg~v~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~-Da~i~~~~~~~~~~~~~~~l~~~ 242 (312)
T 1yae_A 165 TKIEYGAVEDGATMTFFKKS-KISTYDKMWAFMSSRRQSVLVKSNEEGIQRVLTSD-YAFLMESTTIEFVTQRNCNLTQI 242 (312)
T ss_dssp SSSEEECBTTSHHHHHHHHC-CBHHHHHHHHHHHHTHHHHCBSSHHHHHHHHHHSS-EEEEEEHHHHHHHHTTCTTEEEE
T ss_pred cCceEEEEeCChHHHHHHhc-cCchHHHHHHHHHhcCCCcccCCHHHHHHHHHcCC-cEEEeccHHHHHHHhcCCCEEEe
Confidence 2279977666556666432 111 124566889999999999999 99999999999999888999999
Q ss_pred CCccccCccEEEecCCCcchhHHHHHHHhccccccHHHHHHhhcccCCCCCCCCCCCCCcccc
Q 002371 757 GQEFTKSGWGFAFPRDSPLAIDMSTAILTLSENGELQRIHDKWLRKKACSSESSQSDSEQLQI 819 (930)
Q Consensus 757 ~~~~~~~~~~~~~~k~spl~~~~n~~i~~l~e~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~l 819 (930)
++.+...+++++++|++||++.||++|.+|.++|.+++|.+||+....|...... +...+++
T Consensus 243 ~~~~~~~~~~~a~~k~~~l~~~in~~l~~l~~~G~~~~i~~kw~~~~~c~~~~~~-~~~~~~~ 304 (312)
T 1yae_A 243 GGLIDSKGYGVGTPMGSPYRDKITIAILQLQEEGKLHMMKEKWWRGNGCPEEESK-EASALGV 304 (312)
T ss_dssp SSCSSCEEEEEEEETTCSSHHHHHHHHHHHHHHTHHHHHHHHHHCCSCC--------------
T ss_pred cccccccceEEEEeCCCCcHHHHHHHHHHHHHcCCHHHHHhhhcCCCCCCCCCCc-cchhhhh
Confidence 9888888899999999999999999999999999999999999998899876544 3444444
No 39
>3g3k_A Glutamate receptor, ionotropic kainate 2; membrane protein, cell junction, cell membrane, glycoprotein, ION transport, ionic channel, membrane; HET: GLU IPA; 1.24A {Rattus norvegicus} PDB: 3g3j_A* 3g3i_A* 2i0b_A* 3g3h_A* 3g3g_A* 3g3f_A* 1s7y_A* 1s9t_A* 1sd3_A* 1tt1_A* 1s50_A* 2xxr_A* 2xxt_A* 2xxx_A* 2xxw_A* 2xxy_A* 2xxu_A* 2xxv_A* 3qxm_A* 2i0c_A* ...
Probab=99.92 E-value=6.5e-25 Score=231.90 Aligned_cols=235 Identities=23% Similarity=0.411 Sum_probs=196.8
Q ss_pred CCcceEEEecCcccccccEEeecC------cceEEEEeHHHHHHHHHHCCCcccEEEEeCCC-CC---CCCCHHHHHHHH
Q 002371 460 NGRQLRIGVPNRVSYRDFVFKVNG------TDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGD-GH---KNPTYSELINQI 529 (930)
Q Consensus 460 ~g~~lrv~v~~~~~~~p~~~~~~~------~~~~~G~~~dll~~l~~~ln~~~~~~~~~~~~-~~---~n~~~~~l~~~l 529 (930)
++++||||+.. ++||.+.+.. ++++.|+++||++++++++|++++++.++.+. +. .+++|.+++.+|
T Consensus 2 ~~~~l~v~~~~---~~P~~~~~~~~~~~~~~g~~~G~~vdl~~~ia~~lg~~~~~~~~p~~~~g~~~~~~~~~~~~~~~l 78 (259)
T 3g3k_A 2 SNRSLIVTTIL---EEPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTHLGFTYEIRLVEDGKYGAQDDVNGQWNGMVREL 78 (259)
T ss_dssp -CCCEEEEECC---BTTTBEECCCSSCCCGGGGEESHHHHHHHHHHHHHTCCEEEEECTTCCCCCBCTTTCCBCHHHHHH
T ss_pred CCcEEEEEEec---CCCeEEEeecccccCCCceeeeEHHHHHHHHHHHcCCeEEEEECCCCCcCcccCCCCcchHHHHHH
Confidence 46889999985 4788887653 58999999999999999999887777765321 11 156899999999
Q ss_pred HcCcccEEEecEEEecCccceeeecccccccceEEEEeccCCCcCcceecccCchhHHHHHHHHHHHHHHhhhheeeccC
Q 002371 530 TTGVFDAAVGDIAIVTNRTKAVDFTQPYIESGLVVVAPVRKLNSSAWAFLRPFTPLMWAVTGVFFLVVGTVVWILEHRLN 609 (930)
Q Consensus 530 ~~g~~D~~~~~~~~t~~R~~~vdfs~p~~~~~~~~~v~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~~~~~~~~~~~ 609 (930)
.+|++|++++++++|++|.+.++||.||+..+.+++++++.
T Consensus 79 ~~g~~D~~~~~~~~t~eR~~~~~fs~py~~~~~~~~~~~~~--------------------------------------- 119 (259)
T 3g3k_A 79 IDHKADLAVAPLAITYVREEVIDFSKPFMTLGISILYRKGT--------------------------------------- 119 (259)
T ss_dssp HTTSCSEECSSCBCCHHHHTTEEECSCSEEECEEEEEESSS---------------------------------------
T ss_pred hcCcccEEEeeeEecccccceEeeeeeeeeCCEEEEEeCCc---------------------------------------
Confidence 99999999999999999999999999999999999998765
Q ss_pred CCCCCCCcccchhhHHHHHHHhhccccCCcccchhHHHHHHHHHHHHHhhhhhhhhhheeeeeccccCCCCChHHhhhC-
Q 002371 610 DEFRGPPRKQIVTVLWFSFSTMFFAHRENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIDTLMTS- 688 (930)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~s- 688 (930)
+|++++||...
T Consensus 120 --------------------------------------------------------------------~i~~~~dL~g~~ 131 (259)
T 3g3k_A 120 --------------------------------------------------------------------PIDSADDLAKQT 131 (259)
T ss_dssp --------------------------------------------------------------------SCCSHHHHHTCS
T ss_pred --------------------------------------------------------------------cccCHHHhccCC
Confidence 58899999732
Q ss_pred CCeEEEEeCchhHHHHHHhcCCC-----------ccceEeCCCHHHHHHHHHcCCcEEEEccchhhHHHHhcCcceEEeC
Q 002371 689 NDRVGYQVGSFAENYLIEELSIP-----------KSRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSDHCQFSVRG 757 (930)
Q Consensus 689 ~~~i~~~~~s~~~~~l~~~~~~~-----------~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~~~l~~~~ 757 (930)
+..+|+..++....++.+. +.. ...++.+++.++++++|.+|+ ||++.+...+.|++++.|++.+++
T Consensus 132 ~~~ig~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~-da~i~~~~~~~~~~~~~~~l~~~~ 209 (259)
T 3g3k_A 132 KIEYGAVEDGATMTFFKRS-KISTYDKMWAFMSSRRQSVLVKSNEEGIQRVLTSD-YAFLMESTTIEFVTQRNCNLTQIG 209 (259)
T ss_dssp SSEEEEETTSHHHHHHHHC-CSHHHHHHHHHHHHTHHHHEESSHHHHHHHHHHSS-EEEEEEHHHHHHHHHHCTTEEEES
T ss_pred CceEEEecCcHHHHHHhhc-cchhHHHHHHHHHhcCCCcccCCHHHHHHHHHhCC-eEEEechHHHHHHhcCCceEEEec
Confidence 2348888888777777542 111 113456789999999999999 999999999999998899999999
Q ss_pred CccccCccEEEecCCCcchhHHHHHHHhccccccHHHHHHhhcccCCCC
Q 002371 758 QEFTKSGWGFAFPRDSPLAIDMSTAILTLSENGELQRIHDKWLRKKACS 806 (930)
Q Consensus 758 ~~~~~~~~~~~~~k~spl~~~~n~~i~~l~e~G~~~~~~~~~~~~~~~~ 806 (930)
..+...+++++++|++||++.||++|.+|.++|.+++|.+||+....|+
T Consensus 210 ~~~~~~~~~~a~~k~~~l~~~in~~l~~l~~~G~~~~i~~kw~~~~~c~ 258 (259)
T 3g3k_A 210 GLIDSKGYGVGTPMGSPYRDKITLAILKLQEQGKLHMMKEKWWRGNGCP 258 (259)
T ss_dssp SCSSCEEECCEEETTCTHHHHHHHHHHHHHHTC-CHHHHHHHHCC--CC
T ss_pred ccceeeeEEEEECCCCccHHHHHHHHHHHHhcChHHHHHHhhcCCCCCC
Confidence 9888889999999999999999999999999999999999999977786
No 40
>1pb7_A N-methyl-D-aspartate receptor subunit 1; ligand binding receptor, NR1, ligand binding protein; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1pbq_A* 1y1m_A 1y1z_A 1y20_A 2a5t_A* 1pb8_A 1pb9_A
Probab=99.91 E-value=3.8e-25 Score=237.71 Aligned_cols=236 Identities=20% Similarity=0.400 Sum_probs=189.9
Q ss_pred cceEEEecCcccccccEEeecCcceEEEEeHHHHHHHHHHCCCcccEEEEeCCC-CC-------CCCCHHHHHHHHHcCc
Q 002371 462 RQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGD-GH-------KNPTYSELINQITTGV 533 (930)
Q Consensus 462 ~~lrv~v~~~~~~~p~~~~~~~~~~~~G~~~dll~~l~~~ln~~~~~~~~~~~~-~~-------~n~~~~~l~~~l~~g~ 533 (930)
+.|+||+.. .|+||.+.+. ++++.||++||++++++++|++++++..+.+. |. .+++|++++++|.+|+
T Consensus 41 ~~l~vg~~~--~~~P~~~~~~-~g~~~G~~vDll~~ia~~lg~~~~~~~~~d~~~g~~~~~~~~~~~~w~~~~~~l~~g~ 117 (292)
T 1pb7_A 41 KVICTGPND--TSPGSPRHTV-PQCCYGFCIDLLIKLARTMNFTYEVHLVADGKFGTQERVNNSNKKEWNGMMGELLSGQ 117 (292)
T ss_dssp CEEEEEEC----------CEE-EEEEESHHHHHHHHHHHHHTCCEEEEECTTCCCCCEEECTTSSCEEECHHHHHHHHTS
T ss_pred ceeecccCC--CCCCcccccc-ccCcceeHHHHHHHHHHHcCceEEEEEecCCcccccccccccccCcHHHHHHHHHcCC
Confidence 678898876 7888887765 68999999999999999999887666654221 11 1248999999999999
Q ss_pred ccEEEecEEEecCccceeeecccccccceEEEEeccCCCcCcceecccCchhHHHHHHHHHHHHHHhhhheeeccCCCCC
Q 002371 534 FDAAVGDIAIVTNRTKAVDFTQPYIESGLVVVAPVRKLNSSAWAFLRPFTPLMWAVTGVFFLVVGTVVWILEHRLNDEFR 613 (930)
Q Consensus 534 ~D~~~~~~~~t~~R~~~vdfs~p~~~~~~~~~v~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~~~~~~~~~~~~~~~ 613 (930)
+|+++++++++++|.+.++||.||+..+.+++++++.
T Consensus 118 ~D~~~~~~~~t~~R~~~~~fs~Py~~~~~~i~~~~~~------------------------------------------- 154 (292)
T 1pb7_A 118 ADMIVAPLTINNERAQYIEFSKPFKYQGLTILVKKGT------------------------------------------- 154 (292)
T ss_dssp CSEECSSCBCCHHHHTTEEECSCSEEEEEEEEEETTC-------------------------------------------
T ss_pred cCEEEeeeEecHHHhcceEechhhHhcCeEEEEECCc-------------------------------------------
Confidence 9999999999999999999999999999999998754
Q ss_pred CCCcccchhhHHHHHHHhhccccCCcccchhHHHHHHHHHHHHHhhhhhhhhhheeeeeccccCCCCChHHhhhCCC---
Q 002371 614 GPPRKQIVTVLWFSFSTMFFAHRENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIDTLMTSND--- 690 (930)
Q Consensus 614 ~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~s~~--- 690 (930)
++++++||...+.
T Consensus 155 ----------------------------------------------------------------~i~~~~dl~~~g~~~~ 170 (292)
T 1pb7_A 155 ----------------------------------------------------------------RITGINDPRLRNPSDK 170 (292)
T ss_dssp ----------------------------------------------------------------CCCSTTCHHHHSCBTT
T ss_pred ----------------------------------------------------------------CCCCCcCccccCcccc
Confidence 4556677753332
Q ss_pred e-EEEEeCchhHHHHHHhcCC----CccceEeCCCHHHHHHHHHcCCcEEEEccchhhHHHHhcCcceEEeCCccccCcc
Q 002371 691 R-VGYQVGSFAENYLIEELSI----PKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSDHCQFSVRGQEFTKSGW 765 (930)
Q Consensus 691 ~-i~~~~~s~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 765 (930)
. +|+..++....++.+.... +..++..+++.++++++|.+|++||++.+...+.|+++++|++.+++..+...++
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~vDa~i~d~~~~~~~~~~~~~l~~~~~~~~~~~~ 250 (292)
T 1pb7_A 171 FIYATVKQSSVDIYFRRQVELSTMYRHMEKHNYESAAEAIQAVRDNKLHAFIWDSAVLEFEASQKCDLVTTGELFFRSGF 250 (292)
T ss_dssp BCEECBTTSHHHHHHHTCGGGHHHHHHHTTTCBSSHHHHHHHHHTTSCSEEEEEHHHHHHHHHHCTTEEECSSCSEEEEE
T ss_pred eEEEEEcCchHHHHhhhcccHHHHHHHHHhhcCCCHHHHHHHHHcCCceEEEEcHHHHHHHHhcCCCEEEcCccccCCce
Confidence 3 5777888777777432111 1123456889999999999999999999999999999999999999988888899
Q ss_pred EEEecCCCcchhHHHHHHHhccccccHHHHHHhhcccCCCCC
Q 002371 766 GFAFPRDSPLAIDMSTAILTLSENGELQRIHDKWLRKKACSS 807 (930)
Q Consensus 766 ~~~~~k~spl~~~~n~~i~~l~e~G~~~~~~~~~~~~~~~~~ 807 (930)
+++++|++||++.||++|.++.++|.+++|.+||+....|.+
T Consensus 251 ~ia~~k~~~l~~~in~al~~l~~~G~~~~l~~kw~~~~~c~~ 292 (292)
T 1pb7_A 251 GIGMRKDSPWKQNVSLSILKSHENGFMEDLDKTWVRYQECDS 292 (292)
T ss_dssp CCEEETTCSSHHHHHHHHHHHHHSSHHHHHHHHHTSSSCCCC
T ss_pred EEEEeCCCHHHHHHHHHHHHHHhCCCHHHHHHhhCCCCCCCC
Confidence 999999999999999999999999999999999999878863
No 41
>4h5g_A Amino acid ABC superfamily ATP binding cassette transporter, binding protein; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; HET: ARG; 1.78A {Streptococcus pneumoniae} PDB: 4h5f_A*
Probab=99.91 E-value=4.7e-24 Score=222.90 Aligned_cols=220 Identities=22% Similarity=0.307 Sum_probs=191.7
Q ss_pred cceEEEecCcccccccEEee--cCcceEEEEeHHHHHHHHHHCCCcccEEEEeCCCCCCCCCHHHHHHHHHcCcccEEEe
Q 002371 462 RQLRIGVPNRVSYRDFVFKV--NGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVG 539 (930)
Q Consensus 462 ~~lrv~v~~~~~~~p~~~~~--~~~~~~~G~~~dll~~l~~~ln~~~~~~~~~~~~~~~n~~~~~l~~~l~~g~~D~~~~ 539 (930)
.+|+||+.. +|+||.+.+ ++++++.||++||++++++++|++++++. ..|.+++..|.+|++|++++
T Consensus 12 g~L~Vg~~~--~~pP~~~~~~~d~~g~~~G~~vdl~~~ia~~lg~~~~~~~---------~~~~~~~~~l~~g~~d~~~~ 80 (243)
T 4h5g_A 12 GKLVVATSP--DYAPFEFQSLVDGKNQVVGADIDMAQAIADELGVKLEILS---------MSFDNVLTSLQTGKADLAVA 80 (243)
T ss_dssp TEEEEEECC--CBTTTBEEEEETTEEEEESHHHHHHHHHHHHHTSEEEEEE---------CCGGGHHHHHHTTSCSEECS
T ss_pred CEEEEEECC--CCCCcEeeeccCCCCcEEEeHHHHHHHHHHHhCCceEEec---------ccHHHHHHHHHcCCCCcccc
Confidence 579999976 899998853 45789999999999999999997755544 45999999999999999999
Q ss_pred cEEEecCccceeeecccccccceEEEEeccCCCcCcceecccCchhHHHHHHHHHHHHHHhhhheeeccCCCCCCCCccc
Q 002371 540 DIAIVTNRTKAVDFTQPYIESGLVVVAPVRKLNSSAWAFLRPFTPLMWAVTGVFFLVVGTVVWILEHRLNDEFRGPPRKQ 619 (930)
Q Consensus 540 ~~~~t~~R~~~vdfs~p~~~~~~~~~v~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 619 (930)
++++|++|.+.++||.||+..+.++++++...
T Consensus 81 ~~~~t~eR~~~~~fs~py~~~~~~~~v~~~~~------------------------------------------------ 112 (243)
T 4h5g_A 81 GISATDERKEVFDFSIPYYENKISFLVHKADV------------------------------------------------ 112 (243)
T ss_dssp SCBCCHHHHTTEEECSCSBCCCEEEEEEGGGT------------------------------------------------
T ss_pred cccCChhHccEEEccCccccCccccccccccc------------------------------------------------
Confidence 99999999999999999999999999987661
Q ss_pred chhhHHHHHHHhhccccCCcccchhHHHHHHHHHHHHHhhhhhhhhhheeeeeccccCCCCChHHhhhCCCeEEEEeCch
Q 002371 620 IVTVLWFSFSTMFFAHRENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIDTLMTSNDRVGYQVGSF 699 (930)
Q Consensus 620 ~~~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~s~~~i~~~~~s~ 699 (930)
..+++++||. |++||+..|+.
T Consensus 113 ---------------------------------------------------------~~~~~~~dl~--g~~i~v~~g~~ 133 (243)
T 4h5g_A 113 ---------------------------------------------------------EKYKDLTSLE--SANIAAQKGTV 133 (243)
T ss_dssp ---------------------------------------------------------TTCCSHHHHH--TSEEEEETTSH
T ss_pred ---------------------------------------------------------ccccccccCC--CCEEEecCCcH
Confidence 5788999996 89999999999
Q ss_pred hHHHHHHhcCCCccceEeCCCHHHHHHHHHcCCcEEEEccchhhHHHHhcCcceEEe---CCccccCccEEEecCCCc-c
Q 002371 700 AENYLIEELSIPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSDHCQFSVR---GQEFTKSGWGFAFPRDSP-L 775 (930)
Q Consensus 700 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~k~sp-l 775 (930)
...++.+.. +..+++.+++.++++++|.+|++|+++.+...+.+++.++..+... .......+++++++|++| |
T Consensus 134 ~~~~l~~~~--~~~~i~~~~~~~~~~~~l~~GrvD~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~k~~~~L 211 (243)
T 4h5g_A 134 PESMVKEQL--PKAQLTSLTNMGEAVNELQAGKIDAVHMDEPVALSYAAKNAGLAVATVSLKMKDGDANAVALRKNSDDL 211 (243)
T ss_dssp HHHHHHHHC--TTSEEEEESCHHHHHHHHHHTSCSEEEEEHHHHHHHHHHCTTEEECSCCCCCCSSCCBCCEEESSCHHH
T ss_pred HHHHHHHhc--ccceeEEeCCHHHHHHHHHcCCccEEEecHHHHHHHHHHCCCCceeeccCCcccCceEEEEEeCCCHHH
Confidence 888886654 5568889999999999999999999999999988888876654443 234445578999999999 9
Q ss_pred hhHHHHHHHhccccccHHHHHHhhcc
Q 002371 776 AIDMSTAILTLSENGELQRIHDKWLR 801 (930)
Q Consensus 776 ~~~~n~~i~~l~e~G~~~~~~~~~~~ 801 (930)
++.||++|.+|.++|.+++|.+||+.
T Consensus 212 ~~~~n~aL~~l~~dG~~~~i~~Kw~~ 237 (243)
T 4h5g_A 212 KEVVDKVIQKLKDEGTYQSYLEKAAS 237 (243)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 99999999999999999999999987
No 42
>2a5s_A N-methyl-D-aspartate receptor nmdar2A subunit, NMDA receptor nmdar2A; protein-ligand complex, metal transport,membrane protein; HET: GLU; 1.70A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 2a5t_B* 3oen_A* 3oel_A* 3oem_A* 3oek_A*
Probab=99.90 E-value=6.3e-25 Score=235.16 Aligned_cols=241 Identities=20% Similarity=0.384 Sum_probs=189.0
Q ss_pred cCCCcceEEEecCcccccccEEeec---CcceEEEEeHHHHHHHHHHCCCcccEEEEeCCC-CC-CCCCHHHHHHHHHcC
Q 002371 458 PNNGRQLRIGVPNRVSYRDFVFKVN---GTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGD-GH-KNPTYSELINQITTG 532 (930)
Q Consensus 458 ~~~g~~lrv~v~~~~~~~p~~~~~~---~~~~~~G~~~dll~~l~~~ln~~~~~~~~~~~~-~~-~n~~~~~l~~~l~~g 532 (930)
|.+|++|||||+...+|++|....+ +.+++.|+++|+++++++++|+++++...+.+. |. .+++|++++.+|.+|
T Consensus 25 ~~~~~~lrvgv~~~~~~~~~~~~~~~~~~~~~~~G~~~dl~~~i~~~lg~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~g 104 (284)
T 2a5s_A 25 PLTETCVRNTVPCRKFVKINNSTNEGMNVKKCCKGFCIDILKKLSRTVKFTYDLYLVTNGKHGKKVNNVWNGMIGEVVYQ 104 (284)
T ss_dssp CC-CCCCTTCEEEEEEEESSSSSSCEEEEEEEEESHHHHHHHHHHHHHTCCEEEEECCSSSSCCEETTEECHHHHHHHTT
T ss_pred CCCCccccccccccccccccccccCCCCCcceeeEEhHHHHHHHHHHCCCCEEEEEccCCccCcccCCCHHHHHHHHhcC
Confidence 5689999999998777777754321 134799999999999999999876665543221 11 357899999999999
Q ss_pred cccEEEecEEEecCccceeeecccccccceEEEEeccCCCcCcceecccCchhHHHHHHHHHHHHHHhhhheeeccCCCC
Q 002371 533 VFDAAVGDIAIVTNRTKAVDFTQPYIESGLVVVAPVRKLNSSAWAFLRPFTPLMWAVTGVFFLVVGTVVWILEHRLNDEF 612 (930)
Q Consensus 533 ~~D~~~~~~~~t~~R~~~vdfs~p~~~~~~~~~v~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~~~~~~~~~~~~~~ 612 (930)
++|+++++++++++|.+.++||.||+.++.+++++++.
T Consensus 105 ~~D~~~~~~~~t~~R~~~~~fs~p~~~~~~~~~~~~~~------------------------------------------ 142 (284)
T 2a5s_A 105 RAVMAVGSLTINEERSEVVDFSVPFVETGISVMVSRGT------------------------------------------ 142 (284)
T ss_dssp SCSEECSSCBCCHHHHTTEEECCCCEEECEEEEEETTC------------------------------------------
T ss_pred CcCEEEEEEEEeccccceEEeccCchhcCEEEEEECCc------------------------------------------
Confidence 99999999999999999999999999999999999765
Q ss_pred CCCCcccchhhHHHHHHHhhccccCCcccchhHHHHHHHHHHHHHhhhhhhhhhheeeeeccccCCCCChHHhhh-----
Q 002371 613 RGPPRKQIVTVLWFSFSTMFFAHRENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIDTLMT----- 687 (930)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~----- 687 (930)
++++++||.-
T Consensus 143 -----------------------------------------------------------------~~~~~~dl~~~~~~~ 157 (284)
T 2a5s_A 143 -----------------------------------------------------------------QVTGLSDKKFQRPHD 157 (284)
T ss_dssp -----------------------------------------------------------------CCCSTTSHHHHSGGG
T ss_pred -----------------------------------------------------------------ccccccccccCChhH
Confidence 2233333321
Q ss_pred --CCCeEEEEeCchhHHHHHHhcCCCccceEeC--CCHHHHHHHHHcCCcEEEEccchhhHHHHhcC--cceEEeC--Cc
Q 002371 688 --SNDRVGYQVGSFAENYLIEELSIPKSRLVAL--GSPEEYAIALENRTVAAVVDERPYIDLFLSDH--CQFSVRG--QE 759 (930)
Q Consensus 688 --s~~~i~~~~~s~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~--~~l~~~~--~~ 759 (930)
.+.+||+..++.....+.+.+......++.+ ++.++++++|.+|++||++.+...+.|++++. |++.+++ ..
T Consensus 158 l~~~~~vg~v~~~s~~~~l~~~~~~~~~~i~~~~~~~~~~~l~~l~~G~vDa~i~d~~~~~~~~~~~~~~~l~~~~~~~~ 237 (284)
T 2a5s_A 158 YSPPFRFGTVPNGSTERNIRNNYPYMHQYMTRFNQRGVEDALVSLKTGKLDAFIYDAAVLNYKAGRDEGCKLVTIGSGYI 237 (284)
T ss_dssp SSSCCCEECCTTSHHHHHHHTTCHHHHHHHGGGCCSSHHHHHHHHHTTSCSEEEEEHHHHHHHHHTCTTSCEEEEECCCG
T ss_pred cCCCceEEEEeCCchHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHcCCeeEEEEchHHHHHHHhcCCCCCEEEeCCccc
Confidence 2678997754444555543221001134445 79999999999999999999999999998875 7888874 56
Q ss_pred cccCccEEEecCCCcchhHHHHHHHhccccccHHHHHHhhcccCCCC
Q 002371 760 FTKSGWGFAFPRDSPLAIDMSTAILTLSENGELQRIHDKWLRKKACS 806 (930)
Q Consensus 760 ~~~~~~~~~~~k~spl~~~~n~~i~~l~e~G~~~~~~~~~~~~~~~~ 806 (930)
+...+++++++|+++|++.||++|.++.++|.+++|.+||+. ..|.
T Consensus 238 ~~~~~~~~a~~k~~~l~~~ln~~l~~l~~~g~~~~i~~kw~~-~~c~ 283 (284)
T 2a5s_A 238 FATTGYGIALQKGSPWKRQIDLALLQFVGDGEMEELETLWLT-GICH 283 (284)
T ss_dssp GGCEEECCEEETTCTTHHHHHHHHHHHHHHTHHHHHHHHHTC-CCCC
T ss_pred cccCceEEEecCCCHHHHHHHHHHHHHHhCChHHHHHHHhhh-ccCC
Confidence 777889999999999999999999999999999999999998 3675
No 43
>2rc8_A Glutamate [NMDA] receptor subunit 3A; membrane protein, cell junction, glycoprotein, ION transport channel, magnesium; 1.45A {Rattus norvegicus} PDB: 2rc7_A 2rc9_A 2rca_A 2rcb_A
Probab=99.90 E-value=4.1e-24 Score=230.07 Aligned_cols=224 Identities=25% Similarity=0.459 Sum_probs=183.8
Q ss_pred cccccEEeecCcceEEEEeHHHHHHHHHHCCCcccEEEEeCCC-C-CCCCCHHHHHHHHHcCcccEEEecEEEecCccce
Q 002371 473 SYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGD-G-HKNPTYSELINQITTGVFDAAVGDIAIVTNRTKA 550 (930)
Q Consensus 473 ~~~p~~~~~~~~~~~~G~~~dll~~l~~~ln~~~~~~~~~~~~-~-~~n~~~~~l~~~l~~g~~D~~~~~~~~t~~R~~~ 550 (930)
+|+||.+. +++.|+++||++++++++|++++++..+.+. | ..+++|++++++|.+|++|+++++++++++|.+.
T Consensus 58 ~~~P~~~~----~~~~G~~vdll~~ia~~lg~~~~~~~~~~~~~g~~~~~~w~~~~~~l~~g~~D~~~~~~~~t~eR~~~ 133 (294)
T 2rc8_A 58 DTVPIKFK----KCCYGYCIDLLEQLAEDMNFDFDLYIVGDGKYGAWKNGHWTGLVGDLLSGTANMAVTSFSINTARSQV 133 (294)
T ss_dssp CCCCGGGE----EEEESHHHHHHHHHHHHHTEEEEEEECTTCCCCCEETTEECHHHHHHHHTSCSEECSSCBCCHHHHTT
T ss_pred CCCCcccc----CCceEEhHHHHHHHHHHcCCcEEEEECCCCcccccCCCCHHHHHHHHHCCCcCEEEeccccCHhHhce
Confidence 44555443 2589999999999999999876665443221 1 1357899999999999999999999999999999
Q ss_pred eeecccccccceEEEEeccCCCcCcceecccCchhHHHHHHHHHHHHHHhhhheeeccCCCCCCCCcccchhhHHHHHHH
Q 002371 551 VDFTQPYIESGLVVVAPVRKLNSSAWAFLRPFTPLMWAVTGVFFLVVGTVVWILEHRLNDEFRGPPRKQIVTVLWFSFST 630 (930)
Q Consensus 551 vdfs~p~~~~~~~~~v~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 630 (930)
++||.||+..+.+++++++.
T Consensus 134 ~~fs~P~~~~~~~i~~~~~~------------------------------------------------------------ 153 (294)
T 2rc8_A 134 IDFTSPFFSTSLGILVRTRG------------------------------------------------------------ 153 (294)
T ss_dssp SEECSCSEEEEEEEEEETTS------------------------------------------------------------
T ss_pred EEEccchHhcceEEEEECCC------------------------------------------------------------
Confidence 99999999999999998876
Q ss_pred hhccccCCcccchhHHHHHHHHHHHHHhhhhhhhhhheeeeeccccCCCCChHHhh----hCCCeEEEEeCchhHHHHHH
Q 002371 631 MFFAHRENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIDTLM----TSNDRVGYQVGSFAENYLIE 706 (930)
Q Consensus 631 l~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~----~s~~~i~~~~~s~~~~~l~~ 706 (930)
+.|++++||. ..|+++|+..|+....++.+
T Consensus 154 ----------------------------------------------~~i~~~~dL~~~~~~~g~~vg~~~gs~~~~~l~~ 187 (294)
T 2rc8_A 154 ----------------------------------------------TELSGIHDPKLHHPSQGFRFGTVRESSAEDYVRQ 187 (294)
T ss_dssp ----------------------------------------------CCCCSTTCHHHHSCCTTCCEECBTTSHHHHHHHH
T ss_pred ----------------------------------------------CCcCChhhhhhcCcccCeEEEEEcCChHHHHHHH
Confidence 4677888886 24789999999998888865
Q ss_pred hcCCCc--cceEeCCCHHHHHHHHHc--CCcEEEEccchhhHHHHhc--CcceEEeCCccccCccEEEecCCCcchhHHH
Q 002371 707 ELSIPK--SRLVALGSPEEYAIALEN--RTVAAVVDERPYIDLFLSD--HCQFSVRGQEFTKSGWGFAFPRDSPLAIDMS 780 (930)
Q Consensus 707 ~~~~~~--~~~~~~~~~~~~~~~l~~--g~~~a~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~~~k~spl~~~~n 780 (930)
.+.... .+.+.+++.++++++|.+ |++||++.+...+.|++++ .|++.++++.+...+++++++|++||++.||
T Consensus 188 ~~~~~~~~i~~~~~~~~~~~~~~l~~~~GrvDa~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ia~~k~~~l~~~in 267 (294)
T 2rc8_A 188 SFPEMHEYMRRYNVPATPDGVQYLKNDPEKLDAFIMDKALLDYEVSIDADCKLLTVGKPFAIEGYGIGLPPNSPLTSNIS 267 (294)
T ss_dssp HCHHHHHHHGGGCBSSHHHHHHHHHSSSCCCSEEEEEHHHHHHHHHTCSSSCEEECSCCEEEEEECCEECTTCTHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHhccCceeEEEecHHHHHHHHhhCCCCCEEEcCCcccccceEEEecCCCHHHHHHH
Confidence 431100 112357899999999999 9999999999999999876 4789999988888889999999999999999
Q ss_pred HHHHhccccccHHHHHHhhcccCCCC
Q 002371 781 TAILTLSENGELQRIHDKWLRKKACS 806 (930)
Q Consensus 781 ~~i~~l~e~G~~~~~~~~~~~~~~~~ 806 (930)
++|.+|.++|.+++|.+||+....|.
T Consensus 268 ~al~~l~~~G~~~~l~~kw~~~~~c~ 293 (294)
T 2rc8_A 268 ELISQYKSHGFMDVLHDKWYKVVPCG 293 (294)
T ss_dssp HHHHHHHHTTHHHHHHHHHCCC----
T ss_pred HHHHHHHhCCCHHHHHHhhcCCCCCC
Confidence 99999999999999999999977785
No 44
>4gvo_A LMO2349 protein; structural genomics, IDP05245, L-cystine, ABC transporter, periplasmic binding protein, niaid; HET: HIS; 1.45A {Listeria monocytogenes} PDB: 2o1m_A
Probab=99.90 E-value=9.1e-24 Score=220.70 Aligned_cols=222 Identities=16% Similarity=0.217 Sum_probs=185.9
Q ss_pred CCcceEEEecCcccccccEEeecCcceEEEEeHHHHHHHHHHC-CCcccEEEEeCCCCCCCCCHHHHHHHHHcCcccEEE
Q 002371 460 NGRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLL-PYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAV 538 (930)
Q Consensus 460 ~g~~lrv~v~~~~~~~p~~~~~~~~~~~~G~~~dll~~l~~~l-n~~~~~~~~~~~~~~~n~~~~~l~~~l~~g~~D~~~ 538 (930)
+.++|+||+.. .||||.+.+. ++++.||++||+++++++| |++++++. .+|.+++..|.+|++|+++
T Consensus 7 ~~~tl~vg~~~--~~pP~~~~d~-~G~~~G~~vdl~~~ia~~l~g~~~~~~~---------~~~~~~~~~l~~g~~D~~~ 74 (243)
T 4gvo_A 7 KVQTITVGTGT--QFPNVCFLDE-NGKLTGYDVELVKEIDKRLPGYKFKFKT---------MDFSNLLVSLGAGKVDIVA 74 (243)
T ss_dssp -CEEEEEEECS--EETTTEEECT-TSCEESHHHHHHHHHHHTCTTEEEEEEE---------CCGGGHHHHHHTTSCSEEC
T ss_pred cCCeEEEEECC--CCCCeEEECC-CCcEEEhHHHHHHHHHHhccCCeEEEEE---------CCHHHHHHHHHCCCCCEec
Confidence 56789999976 7999999875 7899999999999999998 87655544 3599999999999999999
Q ss_pred ecEEEecCccceeeecccccccceEEEE-eccCCCcCcceecccCchhHHHHHHHHHHHHHHhhhheeeccCCCCCCCCc
Q 002371 539 GDIAIVTNRTKAVDFTQPYIESGLVVVA-PVRKLNSSAWAFLRPFTPLMWAVTGVFFLVVGTVVWILEHRLNDEFRGPPR 617 (930)
Q Consensus 539 ~~~~~t~~R~~~vdfs~p~~~~~~~~~v-~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 617 (930)
+++++|++|.+.++||.||+.....+++ +...
T Consensus 75 ~~~~~t~eR~~~~~fs~p~~~~~~~~~~~~~~~----------------------------------------------- 107 (243)
T 4gvo_A 75 HQMEKSKEREKKFLFNDVAYNNFPLQLTVLDSN----------------------------------------------- 107 (243)
T ss_dssp SCCBCCHHHHHHSEECSSCCEECCEEEEEETTC-----------------------------------------------
T ss_pred ccCCCCHHHhhhhhhhhhhcccccceEEEeccc-----------------------------------------------
Confidence 9999999999999999997776555444 4433
Q ss_pred ccchhhHHHHHHHhhccccCCcccchhHHHHHHHHHHHHHhhhhhhhhhheeeeeccccCCCCChHHhhhCCCeEEEEeC
Q 002371 618 KQIVTVLWFSFSTMFFAHRENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIDTLMTSNDRVGYQVG 697 (930)
Q Consensus 618 ~~~~~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~s~~~i~~~~~ 697 (930)
+.+++++||. |++||+..|
T Consensus 108 -----------------------------------------------------------~~~~~~~dL~--g~~v~v~~g 126 (243)
T 4gvo_A 108 -----------------------------------------------------------NSINSTKDLA--GKRVITSAT 126 (243)
T ss_dssp -----------------------------------------------------------CSCSSGGGGT--TCEEEECTT
T ss_pred -----------------------------------------------------------cccCchHHhc--CCeEEEecC
Confidence 6789999995 999999999
Q ss_pred chhHHHHHHh---cCCCccceEeCCCHHHHHHHHHcCCcEEEEccchhhHHHHhcCc-ceEEeCCccccCccEEEecCCC
Q 002371 698 SFAENYLIEE---LSIPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSDHC-QFSVRGQEFTKSGWGFAFPRDS 773 (930)
Q Consensus 698 s~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~k~s 773 (930)
+....++.+. ........+.+.+.++++++|.+|++||++.+...+.|+.++.. ++.++++.+...+++++++|++
T Consensus 127 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~GrvDa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~ 206 (243)
T 4gvo_A 127 SNGALVLKKINEEQGNNFEIAYEGQGSNDTANQLKTGRADATISTPFAVDFQNKTSAIKEKVVGDVLSNAKVYFMLGKDE 206 (243)
T ss_dssp CHHHHHHHHHHHHTTSCSEEEECCSGGGSHHHHHHHTSCSBEEECHHHHHHHHHTCSSCEEEEEEEEECCEECCEECTTC
T ss_pred chHHHHHHHHHHhccccceeccccCChHHHHHHHHcCCccEEEccHHHHHHHHhhCCCceEEeccCCCCCcEEEEEeCCC
Confidence 8766666432 22222233456788999999999999999999998888877754 6788888888888999999999
Q ss_pred c-chhHHHHHHHhccccccHHHHHHhhcc
Q 002371 774 P-LAIDMSTAILTLSENGELQRIHDKWLR 801 (930)
Q Consensus 774 p-l~~~~n~~i~~l~e~G~~~~~~~~~~~ 801 (930)
| |++.||++|.+|.++|.+++|.+||++
T Consensus 207 ~~l~~~in~~l~~l~~~G~~~~i~~kw~g 235 (243)
T 4gvo_A 207 TKLSKKVDEALQSIIDDGTLKKLSEKWLG 235 (243)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHCC
Confidence 9 999999999999999999999999997
No 45
>3kzg_A Arginine 3RD transport system periplasmic binding protein; arginine transport system, protein structure initiative II(PSI II); 2.06A {Legionella pneumophila subsp} SCOP: c.94.1.0
Probab=99.89 E-value=7.2e-23 Score=212.98 Aligned_cols=218 Identities=17% Similarity=0.314 Sum_probs=194.4
Q ss_pred cceEEEecCcccccccEEe-ecCcceEEEEeHHHHHHHHHHCCCcccEEEEeCCCCCCCCCHHHHHHHHHcCcccEEEec
Q 002371 462 RQLRIGVPNRVSYRDFVFK-VNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGD 540 (930)
Q Consensus 462 ~~lrv~v~~~~~~~p~~~~-~~~~~~~~G~~~dll~~l~~~ln~~~~~~~~~~~~~~~n~~~~~l~~~l~~g~~D~~~~~ 540 (930)
++|+||+.. +|+||.+. +. ++.+.|+++|+++.+++++|++++++.. +|.+++.++.+|++|+++++
T Consensus 3 ~~l~v~~~~--~~~P~~~~~~~-~g~~~G~~~dl~~~i~~~~g~~~~~~~~---------~~~~~~~~l~~g~~D~~~~~ 70 (237)
T 3kzg_A 3 LNLTIGTSK--FNPPFEVWSGN-NSSLYGFDIDLMQEICRRLHATCTFEAY---------IFDDLFPALKNREVDLVIAS 70 (237)
T ss_dssp CEEEEEEES--EETTTEECCCT-TSCCBSHHHHHHHHHHHHTTCEEEEEEE---------CGGGHHHHHHTTSSSEECSS
T ss_pred ceEEEEECC--CCCCeEEEeCC-CCCEeeehHHHHHHHHHHhCCceEEEEc---------CHHHHHHHHhCCCCCEEEEc
Confidence 689999995 79999998 64 7889999999999999999987666654 39999999999999999988
Q ss_pred EEEecCccceeeecccccccceEEEEeccCCCcCcceecccCchhHHHHHHHHHHHHHHhhhheeeccCCCCCCCCcccc
Q 002371 541 IAIVTNRTKAVDFTQPYIESGLVVVAPVRKLNSSAWAFLRPFTPLMWAVTGVFFLVVGTVVWILEHRLNDEFRGPPRKQI 620 (930)
Q Consensus 541 ~~~t~~R~~~vdfs~p~~~~~~~~~v~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (930)
+..+++|.+.++||.||...+.++++++..
T Consensus 71 ~~~~~~r~~~~~fs~p~~~~~~~~~~~~~~-------------------------------------------------- 100 (237)
T 3kzg_A 71 MIITDERKKHFIFSLPYMESNSQYITTVDS-------------------------------------------------- 100 (237)
T ss_dssp CBCCTTGGGTCEECCCSBCCEEEEEEETTC--------------------------------------------------
T ss_pred cccChhHhccceeeeeeeecceEEEEECCC--------------------------------------------------
Confidence 999999999999999999999999998766
Q ss_pred hhhHHHHHHHhhccccCCcccchhHHHHHHHHHHHHHhhhhhhhhhheeeeeccccCCCCChHHhhhCCCeEEEEeCchh
Q 002371 621 VTVLWFSFSTMFFAHRENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIDTLMTSNDRVGYQVGSFA 700 (930)
Q Consensus 621 ~~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~s~~~i~~~~~s~~ 700 (930)
++++++||. |++||+..|+..
T Consensus 101 ---------------------------------------------------------~~~~~~dL~--g~~i~~~~g~~~ 121 (237)
T 3kzg_A 101 ---------------------------------------------------------KISTFDDLH--GKKIGVRKGTPY 121 (237)
T ss_dssp ---------------------------------------------------------SCCSGGGGT--TCEEEEETTSTH
T ss_pred ---------------------------------------------------------CCCCHHHhC--CCEEEEecCCHH
Confidence 388999996 899999999987
Q ss_pred HHHHHHhcCCCccceEeCCCHHHHHHHHHcCCcEEEEccchhhHHHHhcCc--------ceEEeCCcc-ccCccEEEecC
Q 002371 701 ENYLIEELSIPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSDHC--------QFSVRGQEF-TKSGWGFAFPR 771 (930)
Q Consensus 701 ~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~~--------~l~~~~~~~-~~~~~~~~~~k 771 (930)
..++.+.. +..+++.+++.++++++|.+|++|+++.+...+.+++++.. ++.++...+ ...+++++++|
T Consensus 122 ~~~~~~~~--~~~~~~~~~~~~~~~~~l~~G~vDa~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~k 199 (237)
T 3kzg_A 122 ARQVLSEN--RNNQVIFYELIQDMLLGLSNNQVDASLMDYEAAKYWMASEPYAYKLIGKKYKLIGKKISIGEGYSIMANP 199 (237)
T ss_dssp HHHHHHTC--SSCEEEEESSHHHHHHHHHTTSSSEEEEEHHHHHHHHTTSSTTHHHHCCSEEEEEEEEECTTCBCCEECG
T ss_pred HHHHHHhC--CCCcEEEeCCHHHHHHHHHcCCCCEEEeCcHHHHHHHHhCCccccccCCceEEecCccccCccEEEEEcC
Confidence 77775543 34678889999999999999999999999999999998865 788888777 78889999999
Q ss_pred CCc-chhHHHHHHHhccccccHHHHHHhhccc
Q 002371 772 DSP-LAIDMSTAILTLSENGELQRIHDKWLRK 802 (930)
Q Consensus 772 ~sp-l~~~~n~~i~~l~e~G~~~~~~~~~~~~ 802 (930)
++| +++.||++|.++.++|.+++|.+||+..
T Consensus 200 ~~~~l~~~l~~~l~~l~~~G~~~~i~~k~~~~ 231 (237)
T 3kzg_A 200 DQFVLIKKINKILLEMEADGTYLRLYSEYFEG 231 (237)
T ss_dssp GGHHHHHHHHHHHHHHHHSSHHHHHHHHHC--
T ss_pred CCHHHHHHHHHHHHHHHHCCcHHHHHHHHhCc
Confidence 987 9999999999999999999999999983
No 46
>2v3u_A Glutamate receptor delta-2 subunit; postsynaptic membrane, ionotropic glutamate receptors, transmembrane, membrane protein; 1.74A {Rattus norvegicus} PDB: 2v3t_A
Probab=99.89 E-value=1.1e-22 Score=215.49 Aligned_cols=235 Identities=20% Similarity=0.336 Sum_probs=185.3
Q ss_pred CCcceEEEecCcccccccEEeecC----cceEEEEeHHHHHHHHHHCCCcccEEEEe---CCCCCCCCCHHHHHHHHHcC
Q 002371 460 NGRQLRIGVPNRVSYRDFVFKVNG----TDIVHGYCIDVFLAAVRLLPYAVPYKFIP---YGDGHKNPTYSELINQITTG 532 (930)
Q Consensus 460 ~g~~lrv~v~~~~~~~p~~~~~~~----~~~~~G~~~dll~~l~~~ln~~~~~~~~~---~~~~~~n~~~~~l~~~l~~g 532 (930)
+|++|||++.. ++||.+.+.+ .+++.|+++|+++++++++|++++++..+ +|....+.+|++++.+|.+|
T Consensus 1 ~~~~l~v~~~~---~pP~~~~~~~~~g~~g~~~G~~~dl~~~i~~~lg~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~g 77 (265)
T 2v3u_A 1 GGVVLRVVTVL---EEPFVMVSENVLGKPKKYQGFSIDVLDALSNYLGFNYEIYVAPDHKYGSPQEDGTWNGLVGELVFK 77 (265)
T ss_dssp CCCEEEEEECC---BTTTBEEECCSTTCCCEEESHHHHHHHHHHHHHTCEEEEEECTTCCCCCBCTTSCBCHHHHHHHTT
T ss_pred CCeEEEEEEec---cCCeEEEecCCCCCcceEeEEEHHHHHHHHHHcCCcEEEEEccCCcccccCCCCCcchHHHHHHcC
Confidence 57899999996 4889887642 17899999999999999999886666543 22222457899999999999
Q ss_pred cccEEEecEEEecCccceeeecccccccceEEEEeccCCCcCcceecccCchhHHHHHHHHHHHHHHhhhheeeccCCCC
Q 002371 533 VFDAAVGDIAIVTNRTKAVDFTQPYIESGLVVVAPVRKLNSSAWAFLRPFTPLMWAVTGVFFLVVGTVVWILEHRLNDEF 612 (930)
Q Consensus 533 ~~D~~~~~~~~t~~R~~~vdfs~p~~~~~~~~~v~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~~~~~~~~~~~~~~ 612 (930)
++|+++++++++++|.+.++||.||+..+.++++++..
T Consensus 78 ~~D~~~~~~~~t~~R~~~~~fs~p~~~~~~~~~~~~~~------------------------------------------ 115 (265)
T 2v3u_A 78 RADIGISALTITPDRENVVDFTTRYMDYSVGVLLRRGT------------------------------------------ 115 (265)
T ss_dssp SCSEECSSCBCCHHHHTTEEECSCSEEECEEEEEETTC------------------------------------------
T ss_pred CcCeEEeeeEeehhhhccccccceeeeccEEEEEECCC------------------------------------------
Confidence 99999988999999999999999999999999998654
Q ss_pred CCCCcccchhhHHHHHHHhhccccCCcccchhHHHHHHHHHHHHHhhhhhhhhhheeeeeccccCCCCChHHhhhC-CCe
Q 002371 613 RGPPRKQIVTVLWFSFSTMFFAHRENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIDTLMTS-NDR 691 (930)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~s-~~~ 691 (930)
+|++++||.+. +..
T Consensus 116 -----------------------------------------------------------------~i~~~~dL~~~v~v~ 130 (265)
T 2v3u_A 116 -----------------------------------------------------------------SIQSLQDLSKQTDIP 130 (265)
T ss_dssp -----------------------------------------------------------------CCCSHHHHHTCSSSC
T ss_pred -----------------------------------------------------------------CccchhhhhhhhcEE
Confidence 58899999711 223
Q ss_pred EEEEeCchhHHHHHHhcCCCc------------------cceEeCCCHHHHHHHHHcCCcEEEEccchhhHHHHhc--Cc
Q 002371 692 VGYQVGSFAENYLIEELSIPK------------------SRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSD--HC 751 (930)
Q Consensus 692 i~~~~~s~~~~~l~~~~~~~~------------------~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~--~~ 751 (930)
.|...++....++.+. +... .+++.+++.++++++|.+|++ +++.+...+.|++.+ .|
T Consensus 131 ~g~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~G~~-a~~~~~~~~~~~~~~~~~~ 208 (265)
T 2v3u_A 131 YGTVLDSAVYQHVRMK-GLNPFERDSMYSQMWRMINRSNGSENNVLESQAGIQKVKYGNY-AFVWDAAVLEYVAINDPDC 208 (265)
T ss_dssp EECBTTSHHHHHHHHH-HTCTTCSCTHHHHHHHHHCC-----CCBSSHHHHHHHHHHSSC-EEEEEHHHHHHHHHHCTTC
T ss_pred EEEeccHHHHHHHHhc-CCCcccccHHHHHHHHHHHhhcCcccccCCHHHHHHHHHcCCE-EEEEcchHHHHHHhcCCCc
Confidence 3444445555666432 1111 123567899999999999999 888888888888765 46
Q ss_pred ceEEeCCccccCccEEEecCCCcchhHHHHHHHhccccccHHHHHHhhcc-cCCCC
Q 002371 752 QFSVRGQEFTKSGWGFAFPRDSPLAIDMSTAILTLSENGELQRIHDKWLR-KKACS 806 (930)
Q Consensus 752 ~l~~~~~~~~~~~~~~~~~k~spl~~~~n~~i~~l~e~G~~~~~~~~~~~-~~~~~ 806 (930)
++.++++.+...+++++++|++||++.||++|.+|.++|.+++|.++|+. ...|.
T Consensus 209 ~l~~~~~~~~~~~~~~~~~k~~~l~~~in~~l~~l~~~g~~~~i~~kw~~~~~~c~ 264 (265)
T 2v3u_A 209 SFYTVGNTVADRGYGIALQHGSPYRDVFSQRILELQQSGDMDILKHKWWPKNGQCD 264 (265)
T ss_dssp CEEEEC---CCEEECCEEETTCTTHHHHHHHHHHHHHHTHHHHHHHHHCCCCCC--
T ss_pred cEEEeccccCCcceEEEEeCCCccHHHHHHHHHHHhhCChHHHHHhhcCCCcCcCC
Confidence 79999888878889999999999999999999999999999999999998 66774
No 47
>4f3p_A Glutamine-binding periplasmic protein; ssgcid, structural genomics, GLUT seattle structural genomics center for infectious disease; 2.40A {Burkholderia pseudomallei}
Probab=99.89 E-value=2.8e-22 Score=210.20 Aligned_cols=221 Identities=23% Similarity=0.467 Sum_probs=196.6
Q ss_pred CCCcceEEEecCcccccccEEeecCcceEEEEeHHHHHHHHHHCCCcccEEEEeCCCCCCCCCHHHHHHHHHcCcccEEE
Q 002371 459 NNGRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAV 538 (930)
Q Consensus 459 ~~g~~lrv~v~~~~~~~p~~~~~~~~~~~~G~~~dll~~l~~~ln~~~~~~~~~~~~~~~n~~~~~l~~~l~~g~~D~~~ 538 (930)
...++|+||+.. .|+||.+.+ ++.+.|+++|+++.+++++|++++++.. +|.+++.++.+|++|+++
T Consensus 21 ~~~~~l~v~~~~--~~~P~~~~~--~g~~~G~~~dl~~~i~~~~g~~~~~~~~---------~~~~~~~~l~~g~~D~~~ 87 (249)
T 4f3p_A 21 SMAKELVVGTDT--SFMPFEFKQ--GDKYVGFDLDLWAEIAKGAGWTYKIQPM---------DFAGLIPALQTQNIDVAL 87 (249)
T ss_dssp ---CCEEEEEES--CBTTTBEEE--TTEEESHHHHHHHHHHHHHTCCEEEEEE---------CGGGHHHHHHTTSCSEEE
T ss_pred ccCceEEEEeCC--CCCCeEEec--CCeEEEEhHHHHHHHHHHcCCceEEEec---------CHHHHHHHHHCCCCCEEE
Confidence 457899999985 789999874 6789999999999999999988766664 399999999999999998
Q ss_pred ecEEEecCccceeeecccccccceEEEEeccCCCcCcceecccCchhHHHHHHHHHHHHHHhhhheeeccCCCCCCCCcc
Q 002371 539 GDIAIVTNRTKAVDFTQPYIESGLVVVAPVRKLNSSAWAFLRPFTPLMWAVTGVFFLVVGTVVWILEHRLNDEFRGPPRK 618 (930)
Q Consensus 539 ~~~~~t~~R~~~vdfs~p~~~~~~~~~v~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 618 (930)
+++..+++|.+.++||.||.....++++++..
T Consensus 88 ~~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~------------------------------------------------ 119 (249)
T 4f3p_A 88 SGMTIKEERRKAIDFSDPYYDSGLAAMVQANN------------------------------------------------ 119 (249)
T ss_dssp EEEECCHHHHTTEEECSCCEEEEEEEEEETTC------------------------------------------------
T ss_pred eccccCHHHHcCcceecceeeccEEEEEECCC------------------------------------------------
Confidence 88999999999999999999999999998776
Q ss_pred cchhhHHHHHHHhhccccCCcccchhHHHHHHHHHHHHHhhhhhhhhhheeeeeccccCCCCChHHhhhCCCeEEEEeCc
Q 002371 619 QIVTVLWFSFSTMFFAHRENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIDTLMTSNDRVGYQVGS 698 (930)
Q Consensus 619 ~~~~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~s~~~i~~~~~s 698 (930)
+.+++++||. |++||+..|+
T Consensus 120 ----------------------------------------------------------~~i~~~~dL~--g~~i~v~~g~ 139 (249)
T 4f3p_A 120 ----------------------------------------------------------TTIKSIDDLN--GKVIAAKTGT 139 (249)
T ss_dssp ----------------------------------------------------------CSCCSSGGGT--TSEEEEETTS
T ss_pred ----------------------------------------------------------CCcCChHHhC--CCEEEEeCCC
Confidence 5789999995 8899999999
Q ss_pred hhHHHHHHhcCCCccceEeCCCHHHHHHHHHcCCcEEEEccchhhHHHHhcCc--ceEEeCCccccCccEEEecCCCcch
Q 002371 699 FAENYLIEELSIPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSDHC--QFSVRGQEFTKSGWGFAFPRDSPLA 776 (930)
Q Consensus 699 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~~k~spl~ 776 (930)
....++.+.. +..+++.+++.++++++|.+|++|+++.+...+.+++++.. ++.++...+...+++++++|++|+.
T Consensus 140 ~~~~~l~~~~--~~~~~~~~~~~~~~~~~L~~GrvDa~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~k~~~l~ 217 (249)
T 4f3p_A 140 ATIDWIKAHL--KPKEIRQFPNIDQAYLALEAGRVDAAMHDTPNVLFFVNNEGKGRVKVAGAPVSGDKYGIGFPKGSPLV 217 (249)
T ss_dssp HHHHHHHHHC--CCSEEEEESSHHHHHHHHHTTSSSEEEEEHHHHHHHHHTTTTTTEEEEEEEEEEEEEEEEEETTCTHH
T ss_pred hHHHHHHhcC--CCceEEEcCCHHHHHHHHHcCCeeEEEeCcHHHHHHHHhCCCCceEEecCCCCCccEEEEEcCCchHH
Confidence 9888886654 45678889999999999999999999999999999988754 5888888888888999999999999
Q ss_pred hHHHHHHHhccccccHHHHHHhhccc
Q 002371 777 IDMSTAILTLSENGELQRIHDKWLRK 802 (930)
Q Consensus 777 ~~~n~~i~~l~e~G~~~~~~~~~~~~ 802 (930)
+.||++|.++.++|.+++|.++|+..
T Consensus 218 ~~l~~~l~~l~~~g~~~~i~~k~~~~ 243 (249)
T 4f3p_A 218 AKVNAELARMKADGRYAKIYKKWFGS 243 (249)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHcCC
Confidence 99999999999999999999999983
No 48
>3i6v_A Periplasmic His/Glu/Gln/Arg/opine family-binding; structural genomics, transporter, PSI-2, protein structure initiative; HET: LYS; 2.00A {Silicibacter pomeroyi} SCOP: c.94.1.0
Probab=99.89 E-value=1e-22 Score=211.13 Aligned_cols=221 Identities=21% Similarity=0.357 Sum_probs=188.9
Q ss_pred CCcceEEEecCcccccccEEeecCcceEEEEeHHHHHHHHHHCCCcccEEEEeCCCCCCCCCHHHHHHHHHcCcccEEEe
Q 002371 460 NGRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVG 539 (930)
Q Consensus 460 ~g~~lrv~v~~~~~~~p~~~~~~~~~~~~G~~~dll~~l~~~ln~~~~~~~~~~~~~~~n~~~~~l~~~l~~g~~D~~~~ 539 (930)
..++||||+.. .|+||.+.+. ++.+.|+++|+++++++++|++++++. .+|.+++.++.+|++|++++
T Consensus 3 ~a~~l~v~~~~--~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~g~~~~~~~---------~~~~~~~~~l~~g~~D~~~~ 70 (232)
T 3i6v_A 3 LADTVRMGTEG--AYPPYNFIND-AGEVDGFERELGDELCKRAGLTCEWVK---------NDWDSIIPNLVSGNYDTIIA 70 (232)
T ss_dssp ---CEEEEECS--EETTTEEECT-TSCEESHHHHHHHHHHHHHTCCEEEEE---------CCGGGHHHHHHTTSCSEECS
T ss_pred CCCEEEEEECC--CCCCeeEECC-CCCEeeehHHHHHHHHHHcCCceEEEE---------CCHHHHHHHHHCCCCCEEEe
Confidence 35789999985 7999999875 789999999999999999997765554 35999999999999999998
Q ss_pred cEEEecCccceeeecccccccceEEEEeccCCCcCcceecccCchhHHHHHHHHHHHHHHhhhheeeccCCCCCCCCccc
Q 002371 540 DIAIVTNRTKAVDFTQPYIESGLVVVAPVRKLNSSAWAFLRPFTPLMWAVTGVFFLVVGTVVWILEHRLNDEFRGPPRKQ 619 (930)
Q Consensus 540 ~~~~t~~R~~~vdfs~p~~~~~~~~~v~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 619 (930)
+++.+++|.+.++||.||+..+.++++++..
T Consensus 71 ~~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~------------------------------------------------- 101 (232)
T 3i6v_A 71 GMSITDERDEVIDFTQNYIPPTASSYVATSD------------------------------------------------- 101 (232)
T ss_dssp SCBCCHHHHTTSEEEEEEECCCEEEEEESST-------------------------------------------------
T ss_pred CCcCCHHHHhhcCcccccccCCeEEEEECCC-------------------------------------------------
Confidence 8999999999999999999999999987543
Q ss_pred chhhHHHHHHHhhccccCCcccchhHHHHHHHHHHHHHhhhhhhhhhheeeeeccccCCCCChHHhhhCCCeEEEEeCch
Q 002371 620 IVTVLWFSFSTMFFAHRENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIDTLMTSNDRVGYQVGSF 699 (930)
Q Consensus 620 ~~~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~s~~~i~~~~~s~ 699 (930)
++||. | +||+..|+.
T Consensus 102 --------------------------------------------------------------~~dL~--g-~igv~~g~~ 116 (232)
T 3i6v_A 102 --------------------------------------------------------------GADLS--G-IVAAQTATI 116 (232)
T ss_dssp --------------------------------------------------------------TCCTT--S-EEEEETTSH
T ss_pred --------------------------------------------------------------hHHhC--C-CEEEecCch
Confidence 35664 7 999999999
Q ss_pred hHHHHHHhcCCCccceEeCCCHHHHHHHHHcCCcEEEEccchhhHHHHhcC-cceEEeCC-ccccCccEEEecCCCc-ch
Q 002371 700 AENYLIEELSIPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSDH-CQFSVRGQ-EFTKSGWGFAFPRDSP-LA 776 (930)
Q Consensus 700 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~-~~l~~~~~-~~~~~~~~~~~~k~sp-l~ 776 (930)
...++.+. ..+++.+++.++++++|.+|++|+++.+...+.+++++. .++.++.. .+...+++++++|++| ++
T Consensus 117 ~~~~l~~~----~~~~~~~~~~~~~~~~L~~GrvDa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~ 192 (232)
T 3i6v_A 117 QAGYIAES----GATLVEFATPEETIAAVRNGEADAVFADRDYLVPIVAESGGELMFVGDDVPLGGGVGMGLRESDGELR 192 (232)
T ss_dssp HHHHHHHS----SSEEEEESSHHHHHHHHHTTSSSEEEEEHHHHHHHHHHTTTSSEEEEEEEECSSCEEEEECTTCHHHH
T ss_pred HHHHHHhc----CCeEEEeCCHHHHHHHHHcCCcCEEEEChHHHHHHHHhCCCCeEEecCCCCCCCcEEEEEeCCCHHHH
Confidence 99988654 467888999999999999999999999999999998876 67777765 4556789999999998 99
Q ss_pred hHHHHHHHhccccccHHHHHHhhcccCCCCCCCC
Q 002371 777 IDMSTAILTLSENGELQRIHDKWLRKKACSSESS 810 (930)
Q Consensus 777 ~~~n~~i~~l~e~G~~~~~~~~~~~~~~~~~~~~ 810 (930)
+.||++|.++.++|.+++|.+||+....|.....
T Consensus 193 ~~ln~~l~~l~~~G~~~~i~~k~~~~~~~~~~~~ 226 (232)
T 3i6v_A 193 GKFDAAITSMKEDGTLNTMIKKWFGEDAAVYEEG 226 (232)
T ss_dssp HHHHHHHHHHHHTSHHHHHHHHHHCTTSCCC---
T ss_pred HHHHHHHHHHHHCChHHHHHHHHcCCCCCccccc
Confidence 9999999999999999999999999666555443
No 49
>3k4u_A Binding component of ABC transporter; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; HET: LYS; 2.62A {Wolinella succinogenes} SCOP: c.94.1.0
Probab=99.88 E-value=2.4e-22 Score=210.13 Aligned_cols=223 Identities=17% Similarity=0.271 Sum_probs=198.5
Q ss_pred CCcceEEEecCcccccccEEeecCcceEEEEeHHHHHHHHHHCCCcccEEEEeCCCCCCCCCHHHHHHHHHcCcccEEEe
Q 002371 460 NGRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVG 539 (930)
Q Consensus 460 ~g~~lrv~v~~~~~~~p~~~~~~~~~~~~G~~~dll~~l~~~ln~~~~~~~~~~~~~~~n~~~~~l~~~l~~g~~D~~~~ 539 (930)
+.++||||+.. +|+||.+.+. ++.+.|+++|+++.+++++|++++++.. +|.+++.++.+|++|++++
T Consensus 3 ~~~~l~v~~~~--~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~g~~~~~~~~---------~~~~~~~~l~~g~~D~~~~ 70 (245)
T 3k4u_A 3 LRGELRVGLEP--GYLPFEMKDK-KGNVIGFDVDLAREMAKAMGVKLKLVPT---------SWDGLIPGLVTEKFDIIIS 70 (245)
T ss_dssp CCSEEEEEECT--TSTTTCEEET-TTEEESHHHHHHHHHHHHHTCEEEEEEC---------CGGGHHHHHHTTSCSEECS
T ss_pred cCCeEEEEECC--CcCCeeEECC-CCCCccchHHHHHHHHHHhCCeEEEEEc---------cHHHHHHHHhCCCcCEEEe
Confidence 35789999985 7999999875 7899999999999999999977655543 4999999999999999988
Q ss_pred cEEEecCccceeeecccccccceEEEEeccCCCcCcceecccCchhHHHHHHHHHHHHHHhhhheeeccCCCCCCCCccc
Q 002371 540 DIAIVTNRTKAVDFTQPYIESGLVVVAPVRKLNSSAWAFLRPFTPLMWAVTGVFFLVVGTVVWILEHRLNDEFRGPPRKQ 619 (930)
Q Consensus 540 ~~~~t~~R~~~vdfs~p~~~~~~~~~v~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 619 (930)
++..+++|.+.+.||.||...+.++++++...
T Consensus 71 ~~~~t~~r~~~~~~s~p~~~~~~~~~~~~~~~------------------------------------------------ 102 (245)
T 3k4u_A 71 GMTISQERNLRVNFVEPYIVVGQSLLVKKGLE------------------------------------------------ 102 (245)
T ss_dssp SCBCCHHHHTTSEECSCSEEECEEEEEETTTT------------------------------------------------
T ss_pred cCcCCHHHHhhcCcchhhheeceEEEEECCcc------------------------------------------------
Confidence 89999999999999999999999999988751
Q ss_pred chhhHHHHHHHhhccccCCcccchhHHHHHHHHHHHHHhhhhhhhhhheeeeeccccCCCCChHHhhhCCCeEEEEeCch
Q 002371 620 IVTVLWFSFSTMFFAHRENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIDTLMTSNDRVGYQVGSF 699 (930)
Q Consensus 620 ~~~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~s~~~i~~~~~s~ 699 (930)
..|++++||...|++||+..|+.
T Consensus 103 ---------------------------------------------------------~~i~~~~dL~~~g~~i~v~~g~~ 125 (245)
T 3k4u_A 103 ---------------------------------------------------------KGVKSYKDLDKPELTLVTKFGVS 125 (245)
T ss_dssp ---------------------------------------------------------TTCCSGGGGCCSSCEEEEETTSH
T ss_pred ---------------------------------------------------------cccCCHHHhccCCcEEEEeCCcH
Confidence 47889999976689999999999
Q ss_pred hHHHHHHhcCCCccceEeCCCHHHHHHHHHcCCcEEEEccchhhHHHHhcC--cceEEeCCccccCccEEEecCCCc-ch
Q 002371 700 AENYLIEELSIPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSDH--CQFSVRGQEFTKSGWGFAFPRDSP-LA 776 (930)
Q Consensus 700 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~~~k~sp-l~ 776 (930)
...++.+.. +..+++.+++.++++++|.+|++|+++.+...+.+++.+. ..+..+...+...+++++++|++| ++
T Consensus 126 ~~~~l~~~~--~~~~~~~~~~~~~~~~~L~~GrvDa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~ 203 (245)
T 3k4u_A 126 AEYAAKRLF--KNAKLKTYDTEAEAVQEVLNGKADMFIFDLPFNVAFMAQKGQGYLVHLDTSLTYEPLGWAIKKGDPDFL 203 (245)
T ss_dssp HHHHHHHHC--SSSEEEEESSHHHHHHHHHSSSSEEEEEEHHHHHHHHHHTTTTTEEEECCCCSCEEECCEECTTCHHHH
T ss_pred HHHHHHhhC--CcCCEEEeCCHHHHHHHHHcCCCcEEEEcHHHHHHHHhcCCccceeecCCCcccccEEEEEcCCCHHHH
Confidence 988886543 4567888999999999999999999999999998887764 368888888888889999999999 99
Q ss_pred hHHHHHHHhccccccHHHHHHhhcc
Q 002371 777 IDMSTAILTLSENGELQRIHDKWLR 801 (930)
Q Consensus 777 ~~~n~~i~~l~e~G~~~~~~~~~~~ 801 (930)
+.||++|.++.++|.+++|.++|+.
T Consensus 204 ~~ln~~l~~l~~~g~~~~i~~k~~~ 228 (245)
T 3k4u_A 204 NWLNHFLAQIKHDGSYDELYERWFV 228 (245)
T ss_dssp HHHHHHHHHHHHHSHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCcHHHHHHHHhcC
Confidence 9999999999999999999999998
No 50
>1mqi_A Glutamate receptor 2; GLUR2, ligand binding core, S1S2, partial agonist, WILLARDIINES, fluoro-WILLARDIINE, membrane protein; HET: FWD; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1ftj_A* 1ftl_A* 1fto_A 1fw0_A* 1m5b_A* 1ftm_A* 1m5c_A* 1mm6_A* 1mm7_A* 1mqg_A* 1m5e_A* 1mqj_A* 1ms7_A* 1mxu_A* 1mxv_A 1mxw_A 1mxx_A 1mxy_A 1mxz_A 1my0_A ...
Probab=99.88 E-value=1.8e-22 Score=213.57 Aligned_cols=233 Identities=18% Similarity=0.387 Sum_probs=189.5
Q ss_pred CCcceEEEecCcccccccEEeecC------cceEEEEeHHHHHHHHHHCCCcccEEEEe---CCCCCCCC-CHHHHHHHH
Q 002371 460 NGRQLRIGVPNRVSYRDFVFKVNG------TDIVHGYCIDVFLAAVRLLPYAVPYKFIP---YGDGHKNP-TYSELINQI 529 (930)
Q Consensus 460 ~g~~lrv~v~~~~~~~p~~~~~~~------~~~~~G~~~dll~~l~~~ln~~~~~~~~~---~~~~~~n~-~~~~l~~~l 529 (930)
++++|+|++. .|+||.+.+.. ++.+.|+++|+++++++++|++++++..+ +|....++ +|++++.+|
T Consensus 2 ~~~~l~v~~~---~~pP~~~~~~~~~~~~~~g~~~G~~~dl~~~ia~~lg~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l 78 (263)
T 1mqi_A 2 ANKTVVVTTI---LESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGEL 78 (263)
T ss_dssp -CCCEEEEEC---CBTTTBEECTTGGGCCGGGGEESHHHHHHHHHHHHHTCCEEEEECTTCCCCCBCTTTCCBCHHHHHH
T ss_pred CCeEEEEEEe---cCCCcEEEecCcccccCCCceeeeHHHHHHHHHHHcCceEEEEEccccccCccCCCCCCcHHHHHHH
Confidence 3578999998 47999988753 47899999999999999999886666553 23333333 799999999
Q ss_pred HcCcccEEEecEEEecCccceeeecccccccceEEEEeccCCCcCcceecccCchhHHHHHHHHHHHHHHhhhheeeccC
Q 002371 530 TTGVFDAAVGDIAIVTNRTKAVDFTQPYIESGLVVVAPVRKLNSSAWAFLRPFTPLMWAVTGVFFLVVGTVVWILEHRLN 609 (930)
Q Consensus 530 ~~g~~D~~~~~~~~t~~R~~~vdfs~p~~~~~~~~~v~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~~~~~~~~~~~ 609 (930)
.+|++|+++++++++++|.+.++||.||+..+.++++++..
T Consensus 79 ~~g~~D~~~~~~~~t~~R~~~~~fs~p~~~~~~~~~~~~~~--------------------------------------- 119 (263)
T 1mqi_A 79 VYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGT--------------------------------------- 119 (263)
T ss_dssp HTTSCSEECSSCBCCHHHHTTEEECSCSEEECEEEEEETTC---------------------------------------
T ss_pred HcCCcCEEEEeeEecHHHHhhcccccceecccEEEEEcCcc---------------------------------------
Confidence 99999999988999999999999999999999999998755
Q ss_pred CCCCCCCcccchhhHHHHHHHhhccccCCcccchhHHHHHHHHHHHHHhhhhhhhhhheeeeeccccCCCCChHHhhhCC
Q 002371 610 DEFRGPPRKQIVTVLWFSFSTMFFAHRENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIDTLMTSN 689 (930)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~s~ 689 (930)
+|++++||. |
T Consensus 120 --------------------------------------------------------------------~i~~~~dL~--g 129 (263)
T 1mqi_A 120 --------------------------------------------------------------------PIESAEDLS--K 129 (263)
T ss_dssp --------------------------------------------------------------------SCCSHHHHH--T
T ss_pred --------------------------------------------------------------------ccCCHHHHh--c
Confidence 578999997 5
Q ss_pred Ce---EEEEeCchhHHHHHHhcCCC-----------ccceEeCCCHHHHHHHH--HcCCcEEEEccchhhHHHHhcC-cc
Q 002371 690 DR---VGYQVGSFAENYLIEELSIP-----------KSRLVALGSPEEYAIAL--ENRTVAAVVDERPYIDLFLSDH-CQ 752 (930)
Q Consensus 690 ~~---i~~~~~s~~~~~l~~~~~~~-----------~~~~~~~~~~~~~~~~l--~~g~~~a~~~~~~~~~~~~~~~-~~ 752 (930)
++ +|+..++....++.+. ... ...++.+++.++++++| .+|+ +|++.+...+.|++++. ++
T Consensus 130 ~~~~~ig~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~-da~~~~~~~~~~~~~~~~~~ 207 (263)
T 1mqi_A 130 QTEIAYGTLDSGSTKEFFRRS-KIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSKGK-YAYLLESTMNEYIEQRKPCD 207 (263)
T ss_dssp CSSSEEECBSSSHHHHHHHHC-CSHHHHHHHHHHHHCSSCCCBSSHHHHHHHHHHTTTS-EEEEEEHHHHHHHTTSTTCC
T ss_pred ccCeeEEEEeccHHHHHHHhc-cchhHHHHHHHHhhCCCceecCCHHHHHHHHhhcCCc-EEEEechHHHHHHHhcCCCc
Confidence 55 5644433334444332 111 12466788999999999 8888 89999988888888765 57
Q ss_pred eEEeCCccccCccEEEecCCCcchhHHHHHHHhccccccHHHHHHhhcc-cCCCC
Q 002371 753 FSVRGQEFTKSGWGFAFPRDSPLAIDMSTAILTLSENGELQRIHDKWLR-KKACS 806 (930)
Q Consensus 753 l~~~~~~~~~~~~~~~~~k~spl~~~~n~~i~~l~e~G~~~~~~~~~~~-~~~~~ 806 (930)
+.++++.+...+++++++|+++|++.||++|.+|.++|.+++|.++|+. ...|+
T Consensus 208 ~~~~~~~~~~~~~~~~~~k~~~l~~~in~~l~~l~~~g~~~~i~~k~~~~~~~C~ 262 (263)
T 1mqi_A 208 TMKVGGNLDSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWWYDKGECG 262 (263)
T ss_dssp EEEESCCSCCEEECCEEETTCTTHHHHHHHHHHHHHTTHHHHHHHHHHTTTCSCC
T ss_pred eEEcCCcccccceEEEEeCCCccHHHHHHHHHHHHhcccHHHHHHHHcCCCCCCC
Confidence 8888888777889999999999999999999999999999999999998 67786
No 51
>3del_B Arginine binding protein; alpha and beta protein (A/B), periplasmic protein, arginine protein binding, transport protein; 1.92A {Chlamydia trachomatis} SCOP: c.94.1.0
Probab=99.88 E-value=4.9e-22 Score=207.29 Aligned_cols=223 Identities=20% Similarity=0.308 Sum_probs=195.2
Q ss_pred CCcceEEEecCcccccccEEeecCcceEEEEeHHHHHHHHHHCCCcccEEEEeCCCCCCCCCHHHHHHHHHcCcccEEEe
Q 002371 460 NGRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVG 539 (930)
Q Consensus 460 ~g~~lrv~v~~~~~~~p~~~~~~~~~~~~G~~~dll~~l~~~ln~~~~~~~~~~~~~~~n~~~~~l~~~l~~g~~D~~~~ 539 (930)
+.++|+||+.. .|+||.+.+. ++.+.|+++|+++.+++++|++++++. .+|.+++..+.+|++|++++
T Consensus 9 ~~~~l~v~~~~--~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~g~~~~~~~---------~~~~~~~~~l~~g~~D~~~~ 76 (242)
T 3del_B 9 NSEKFIVGTNA--TYPPFEFVDK-RGEVVGFDIDLAREISNKLGKTLDVRE---------FSFDALILNLKQHRIDAVIT 76 (242)
T ss_dssp --CEEEEEECS--CBTTTBEECT-TSCEESHHHHHHHHHHHHHTCEEEEEE---------CCGGGHHHHHHTTSSSEECS
T ss_pred cCCcEEEEeCC--CCCCeeEECC-CCCEEEeeHHHHHHHHHHcCCceEEEE---------cCHHHHHHHHhCCCcCEEEe
Confidence 35789999965 7999999875 789999999999999999997755544 35999999999999999998
Q ss_pred cEEEecCccceeeeccccc--ccceEEEEeccCCCcCcceecccCchhHHHHHHHHHHHHHHhhhheeeccCCCCCCCCc
Q 002371 540 DIAIVTNRTKAVDFTQPYI--ESGLVVVAPVRKLNSSAWAFLRPFTPLMWAVTGVFFLVVGTVVWILEHRLNDEFRGPPR 617 (930)
Q Consensus 540 ~~~~t~~R~~~vdfs~p~~--~~~~~~~v~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 617 (930)
++..+++|.+.++| .||+ ..+.++++++..
T Consensus 77 ~~~~~~~r~~~~~~-~p~~~~~~~~~~~~~~~~----------------------------------------------- 108 (242)
T 3del_B 77 GMSITPSRLKEILM-IPYYGEEIKHLVLVFKGE----------------------------------------------- 108 (242)
T ss_dssp SBBCCHHHHTTEEE-EEEEEEEESEEEEEEESC-----------------------------------------------
T ss_pred cCcCCHHHHhcccc-eeeeecCCceEEEEeCCC-----------------------------------------------
Confidence 89999999999999 9999 888999887654
Q ss_pred ccchhhHHHHHHHhhccccCCcccchhHHHHHHHHHHHHHhhhhhhhhhheeeeeccccCCCCChHHhhhCCCeEEEEeC
Q 002371 618 KQIVTVLWFSFSTMFFAHRENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIDTLMTSNDRVGYQVG 697 (930)
Q Consensus 618 ~~~~~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~s~~~i~~~~~ 697 (930)
++++++||. |++||+..|
T Consensus 109 ------------------------------------------------------------~i~~~~dL~--g~~i~v~~g 126 (242)
T 3del_B 109 ------------------------------------------------------------NKHPLPLTQ--YRSVAVQTG 126 (242)
T ss_dssp ------------------------------------------------------------CSCCCCGGG--SSCEEEETT
T ss_pred ------------------------------------------------------------CCCCHHHhC--CCEEEEEcC
Confidence 678899996 889999999
Q ss_pred chhHHHHHHhcCCCccceEeCCCHHHHHHHHHcCCcEEEEccchhhHHHHhcCcceEEeCCccccCc----cEEEecCCC
Q 002371 698 SFAENYLIEELSIPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSDHCQFSVRGQEFTKSG----WGFAFPRDS 773 (930)
Q Consensus 698 s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----~~~~~~k~s 773 (930)
+....++.+ .+..+++.+++.++++++|.+|++|+++.+...+.+++++...+.++...+.... ++++++|++
T Consensus 127 ~~~~~~l~~---~~~~~~~~~~~~~~~~~~L~~g~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~ 203 (242)
T 3del_B 127 TYQEAYLQS---LSEVHIRSFDSTLEVLMEVMHGKSPVAVLEPSIAQVVLKDFPALSTATIDLPEDQWVLGYGIGVASDR 203 (242)
T ss_dssp SHHHHHHHH---STTCCEEEESSHHHHHHHHHTTSSSEEEECHHHHHHHGGGCTTEEEEEEECCGGGCEEEEEEEEETTC
T ss_pred cHHHHHHHh---CCCceEEEECCHHHHHHHHHcCCCCEEEecHHHHHHHHHhCCCeEEecCccCcccccceEEEEEeCCC
Confidence 999988865 3556788899999999999999999999999999999998877888877776667 899999999
Q ss_pred c-chhHHHHHHHhccccccHHHHHHhhcccCCCCC
Q 002371 774 P-LAIDMSTAILTLSENGELQRIHDKWLRKKACSS 807 (930)
Q Consensus 774 p-l~~~~n~~i~~l~e~G~~~~~~~~~~~~~~~~~ 807 (930)
| +++.||++|.++.++|.+++|.+||+....+..
T Consensus 204 ~~l~~~l~~~l~~l~~~g~~~~i~~k~~~~~~~~~ 238 (242)
T 3del_B 204 PALALKIEAAVQEIRKEGVLAELEQKWGLNNLEHH 238 (242)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHTTGGGCSST
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHCCCCCccc
Confidence 8 999999999999999999999999998544443
No 52
>3hv1_A Polar amino acid ABC uptake transporter substrate binding protein; protein structure initiative II(PSI II), nysgxrc; 1.90A {Streptococcus thermophilus lmg 18311}
Probab=99.87 E-value=7.1e-22 Score=209.65 Aligned_cols=225 Identities=19% Similarity=0.361 Sum_probs=196.5
Q ss_pred CCcceEEEecCcccccccEEeecCcceEEEEeHHHHHHHHHHCCCcccEEEEeCCCCCCCCCHHHHHHHHHcCcccEEEe
Q 002371 460 NGRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVG 539 (930)
Q Consensus 460 ~g~~lrv~v~~~~~~~p~~~~~~~~~~~~G~~~dll~~l~~~ln~~~~~~~~~~~~~~~n~~~~~l~~~l~~g~~D~~~~ 539 (930)
+.++||||+.. .|+||.+.+. ++.+.|+++|+++.+++++|++++++.. +|.+++.++.+|++|++++
T Consensus 19 ~~~~l~v~~~~--~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~g~~~~~~~~---------~~~~~~~~l~~g~~D~~~~ 86 (268)
T 3hv1_A 19 KEKKIKIGFDA--TFVPMGYEEK-DGSYIGFDIDLANAVFKLYGIDVEWQAI---------DWDMKETELKNGTIDLIWN 86 (268)
T ss_dssp HHTEEEEEECT--EETTTEEECT-TSCEECHHHHHHHHHHHTTTCEEEEEEC---------CGGGHHHHHHHTSCSEECS
T ss_pred cCCcEEEEECC--CCCCceEECC-CCCEEEehHHHHHHHHHHhCCcEEEEEC---------CHHHHHHHHHCCCCCEEEe
Confidence 45789999986 7999999875 7899999999999999999977555543 4999999999999999998
Q ss_pred cEEEecCccceeeecccccccceEEEEeccCCCcCcceecccCchhHHHHHHHHHHHHHHhhhheeeccCCCCCCCCccc
Q 002371 540 DIAIVTNRTKAVDFTQPYIESGLVVVAPVRKLNSSAWAFLRPFTPLMWAVTGVFFLVVGTVVWILEHRLNDEFRGPPRKQ 619 (930)
Q Consensus 540 ~~~~t~~R~~~vdfs~p~~~~~~~~~v~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 619 (930)
++..+++|.+.++||.||.....++++++..
T Consensus 87 ~~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~------------------------------------------------- 117 (268)
T 3hv1_A 87 GYSVTDERKQSADFTEPYMVNEQVLVTKKSS------------------------------------------------- 117 (268)
T ss_dssp SCBCCHHHHTTCEECCCCEEECEEEEEEGGG-------------------------------------------------
T ss_pred cCccCHHHHhcCcCcHHHeeCceEEEEECCC-------------------------------------------------
Confidence 8999999999999999999999999998654
Q ss_pred chhhHHHHHHHhhccccCCcccchhHHHHHHHHHHHHHhhhhhhhhhheeeeeccccCCCCChHHhhhCCCeEEEEeCch
Q 002371 620 IVTVLWFSFSTMFFAHRENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIDTLMTSNDRVGYQVGSF 699 (930)
Q Consensus 620 ~~~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~s~~~i~~~~~s~ 699 (930)
.|++++||. |++||+..|+.
T Consensus 118 ----------------------------------------------------------~i~~~~dL~--g~~i~v~~g~~ 137 (268)
T 3hv1_A 118 ----------------------------------------------------------GIDSVAGMA--GKTLGAQAGSS 137 (268)
T ss_dssp ----------------------------------------------------------CCCSSGGGT--TCCEEEETTCH
T ss_pred ----------------------------------------------------------CCCCHHHhC--CCEEEEEeCCc
Confidence 678999995 89999999999
Q ss_pred hHHHHHHhcC-----CCccceEeCCCHHHHHHHHHcCCcEEEEccchhhHHHHhcC---cceEEeCCccccCccEEEecC
Q 002371 700 AENYLIEELS-----IPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSDH---CQFSVRGQEFTKSGWGFAFPR 771 (930)
Q Consensus 700 ~~~~l~~~~~-----~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~~~~~~k 771 (930)
...++.+... .+..+++.+++.++++++|.+|++|+++.+...+.+++++. +++.++...+...+++++++|
T Consensus 138 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~GrvDa~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~k 217 (268)
T 3hv1_A 138 GYDAFNASPKILKDVVANQKVVQYSTFTQALIDLNSGRIDGLLIDRVYANYYLEKSGVLDQYNVMPAGYEGESFAVGARK 217 (268)
T ss_dssp HHHHHHHCTTTTTTTSGGGCEEEESSHHHHHHHHHHTSCSEEEEEHHHHHHHHHHTTCGGGEEEEECSSCCEEECCEECT
T ss_pred hHHHHHHhhHHHhhhcccceEEEeCCHHHHHHHHHcCCCCEEEeCHHHHHHHHHhCCCCCceEECCCCCCCCcEEEEEcC
Confidence 8888854321 22357788999999999999999999999999999988874 468888887778889999999
Q ss_pred CCc-chhHHHHHHHhccccccHHHHHHhhcccCCC
Q 002371 772 DSP-LAIDMSTAILTLSENGELQRIHDKWLRKKAC 805 (930)
Q Consensus 772 ~sp-l~~~~n~~i~~l~e~G~~~~~~~~~~~~~~~ 805 (930)
++| +++.||++|.++.++|.+++|.++|+....+
T Consensus 218 ~~~~l~~~ln~~l~~l~~~g~~~~i~~k~~~~~~~ 252 (268)
T 3hv1_A 218 VDKTLIKKINQGFETLYKNGEFQKISNKWFGEDVA 252 (268)
T ss_dssp TCHHHHHHHHHHHHHHHHHTHHHHHHHHHHSSCCC
T ss_pred CCHHHHHHHHHHHHHHHhCCHHHHHHHHhcCCCCC
Confidence 998 9999999999999999999999999984333
No 53
>3kbr_A Cyclohexadienyl dehydratase; pseudomonas aeruginos structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Pseudomonas aeruginosa}
Probab=99.87 E-value=3.5e-22 Score=207.93 Aligned_cols=222 Identities=15% Similarity=0.246 Sum_probs=194.2
Q ss_pred CCcceEEEecCcccccccEEeecCcceEEEEeHHHHHHHHHHCCCcccEEEEeCCCCCCCCCHHHHHHHHHcCcccEEEe
Q 002371 460 NGRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVG 539 (930)
Q Consensus 460 ~g~~lrv~v~~~~~~~p~~~~~~~~~~~~G~~~dll~~l~~~ln~~~~~~~~~~~~~~~n~~~~~l~~~l~~g~~D~~~~ 539 (930)
+.++|+||+.. .|+||.+.+. ++.+.|+++|+++.+++++|++++++.. +|.+++.++.+|++|++++
T Consensus 13 ~~~~l~v~~~~--~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~g~~~~~~~~---------~~~~~~~~l~~g~~D~~~~ 80 (239)
T 3kbr_A 13 ESGVLRVATTG--DYKPFSYRTE-EGGYAGFDVDMAQRLAESLGAKLVVVPT---------SWPNLMRDFADDRFDIAMS 80 (239)
T ss_dssp HHTEEEEEECS--EETTTEEECT-TSCEESHHHHHHHHHHHHTTCEEEEEEC---------CTTTHHHHHHTTCCSEECS
T ss_pred hCCeEEEEECC--CCCCeeEECC-CCCEEeehHHHHHHHHHHHCCceEEEEe---------CHHHHHHHHHCCCcCEEEe
Confidence 35789999975 7999999875 7899999999999999999977555543 5999999999999999988
Q ss_pred cEEEecCccceeeecccccccceEEEEeccCCCcCcceecccCchhHHHHHHHHHHHHHHhhhheeeccCCCCCCCCccc
Q 002371 540 DIAIVTNRTKAVDFTQPYIESGLVVVAPVRKLNSSAWAFLRPFTPLMWAVTGVFFLVVGTVVWILEHRLNDEFRGPPRKQ 619 (930)
Q Consensus 540 ~~~~t~~R~~~vdfs~p~~~~~~~~~v~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 619 (930)
++..+++|.+.++||.||...+.++++++...
T Consensus 81 ~~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~~------------------------------------------------ 112 (239)
T 3kbr_A 81 GISINLERQRQAYFSIPYLRDGKTPITLCSEE------------------------------------------------ 112 (239)
T ss_dssp SCBCCHHHHTTCEECSCSEEECEEEEEEGGGG------------------------------------------------
T ss_pred CCcCCHHHcCccccchHHhccCcEEEEECCcc------------------------------------------------
Confidence 89999999999999999999999999987651
Q ss_pred chhhHHHHHHHhhccccCCcccchhHHHHHHHHHHHHHhhhhhhhhhheeeeeccccCCCCChHHhhhCCCeEEEEeCch
Q 002371 620 IVTVLWFSFSTMFFAHRENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIDTLMTSNDRVGYQVGSF 699 (930)
Q Consensus 620 ~~~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~s~~~i~~~~~s~ 699 (930)
..|++++||...|++||+..|+.
T Consensus 113 ---------------------------------------------------------~~i~~~~dL~~~g~~v~~~~g~~ 135 (239)
T 3kbr_A 113 ---------------------------------------------------------ARFQTLEQIDQPGVTAIVNPGGT 135 (239)
T ss_dssp ---------------------------------------------------------GGGSSHHHHSSTTCEEEECTTSH
T ss_pred ---------------------------------------------------------cccCCHHHhcCCCcEEEEcCCCc
Confidence 46889999976688999999999
Q ss_pred hHHHHHHhcCCCccceEeCCCHHHHHHHHHcCCcEEEEccchhhHHHHhcCcceEEeC--CccccCccEEEecCCCc-ch
Q 002371 700 AENYLIEELSIPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSDHCQFSVRG--QEFTKSGWGFAFPRDSP-LA 776 (930)
Q Consensus 700 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~k~sp-l~ 776 (930)
...++.+.. +..+++.+++.++++++|.+|++|+++.+...+.+++++++++.++. .++...+++++++| .| +.
T Consensus 136 ~~~~l~~~~--~~~~~~~~~~~~~~~~~l~~grvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k-~~~l~ 212 (239)
T 3kbr_A 136 NEKFARANL--KKARILVHPDNVTIFQQIVDGKADLMMTDAIEARLQSRLHPELCAVHPQQPFDFAEKAYLLPR-DEAFK 212 (239)
T ss_dssp HHHHHHHHC--SSSEEEECCCTTTHHHHHHTTSCSEEEEEHHHHHHHHHHCTTEEECCCC-CCCCEEECCEECS-CHHHH
T ss_pred HHHHHHHhC--CCCceEEeCCHHHHHHHHHcCCcCEEEEchHHHHHHHHhCCCcEEecCCCCccccceEEEEcC-CHHHH
Confidence 988886543 45678889999999999999999999999999999998877777765 34667788999999 66 99
Q ss_pred hHHHHHHHhccccccHHHHHHhhcc
Q 002371 777 IDMSTAILTLSENGELQRIHDKWLR 801 (930)
Q Consensus 777 ~~~n~~i~~l~e~G~~~~~~~~~~~ 801 (930)
+.||++|.++.++|.+++|.++|+.
T Consensus 213 ~~ln~~l~~l~~~g~~~~i~~k~~~ 237 (239)
T 3kbr_A 213 RYVDQWLHIAEQSGLLRQRMEHWLE 237 (239)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHCCcHHHHHHHHhc
Confidence 9999999999999999999999986
No 54
>3tql_A Arginine-binding protein; transport and binding proteins, transport protein; HET: MSE ARG; 1.59A {Coxiella burnetii} SCOP: c.94.1.0
Probab=99.87 E-value=1.4e-21 Score=201.39 Aligned_cols=218 Identities=23% Similarity=0.404 Sum_probs=187.5
Q ss_pred cceEEEecCcccccccEEeecCcceEEEEeHHHHHHHHHHCCCcccEEEEeCCCCCCCCCHHHHHHHHHcCcccEEEecE
Q 002371 462 RQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGDI 541 (930)
Q Consensus 462 ~~lrv~v~~~~~~~p~~~~~~~~~~~~G~~~dll~~l~~~ln~~~~~~~~~~~~~~~n~~~~~l~~~l~~g~~D~~~~~~ 541 (930)
++||||+.. .|+||.+.+. ++.+.|+++|+++.+++++|++++++. .+|.+++.++.+|++|++++++
T Consensus 2 ~~l~v~~~~--~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~g~~~~~~~---------~~~~~~~~~l~~g~~D~~~~~~ 69 (227)
T 3tql_A 2 DTIKFATEA--TYPPYVYMGP-SGQVEGFGADIVKAVCKQMQAVCTISN---------QPWDSLIPSLKLGKFDALFGGM 69 (227)
T ss_dssp CEEEEEECS--CBTTTBEEC---CCEESHHHHHHHHHHHHTTCEEEEEE---------CCHHHHHHHHHHTSCSEECSSC
T ss_pred ceEEEEEcC--CCCCeeEECC-CCCcccchHHHHHHHHHHhCCeEEEEe---------CCHHHHHHHHhCCCCCEEEecC
Confidence 679999986 7999999875 788999999999999999997766554 3599999999999999998889
Q ss_pred EEecCccceeeecccccccceEEEEeccCCCcCcceecccCchhHHHHHHHHHHHHHHhhhheeeccCCCCCCCCcccch
Q 002371 542 AIVTNRTKAVDFTQPYIESGLVVVAPVRKLNSSAWAFLRPFTPLMWAVTGVFFLVVGTVVWILEHRLNDEFRGPPRKQIV 621 (930)
Q Consensus 542 ~~t~~R~~~vdfs~p~~~~~~~~~v~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (930)
..+++|.+.+.||.||.....++++++..
T Consensus 70 ~~~~~r~~~~~~s~p~~~~~~~l~~~~~~--------------------------------------------------- 98 (227)
T 3tql_A 70 NITTARQKEVDFTDPYYTNSVSFIADKNT--------------------------------------------------- 98 (227)
T ss_dssp BCCTTGGGTEEECSCSBCCEEEEEEETTS---------------------------------------------------
T ss_pred cCCHhHHhheecccceeccceEEEEeCCC---------------------------------------------------
Confidence 99999999999999999999999998776
Q ss_pred hhHHHHHHHhhccccCCcccchhHHHHHHHHHHHHHhhhhhhhhhheeeeeccccCCCCChHHhhhCCCeEEEEeCchhH
Q 002371 622 TVLWFSFSTMFFAHRENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIDTLMTSNDRVGYQVGSFAE 701 (930)
Q Consensus 622 ~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~s~~~i~~~~~s~~~ 701 (930)
+.+++++||. |++||+..|+...
T Consensus 99 -------------------------------------------------------~~~~~~~dL~--g~~v~~~~g~~~~ 121 (227)
T 3tql_A 99 -------------------------------------------------------PLTLSKQGLK--GKIIGVQGGTTFD 121 (227)
T ss_dssp -------------------------------------------------------CCCCSTTTTT--TCEEEEETTSHHH
T ss_pred -------------------------------------------------------CCCCCHHHhC--CCEEEEEecccHH
Confidence 3347889995 8999999999988
Q ss_pred HHHHHhcCCCccceEeCCCHHHHHHHHHcCCcEEEEccchhhHHHHhcCcc--eEEeCCccc-----cCccEEEecCCCc
Q 002371 702 NYLIEELSIPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSDHCQ--FSVRGQEFT-----KSGWGFAFPRDSP 774 (930)
Q Consensus 702 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~~~--l~~~~~~~~-----~~~~~~~~~k~sp 774 (930)
.++.+..... .+++.+++.++++++|.+|++|+++.+...+.+++++... +.+++..+. ..+++++++|++|
T Consensus 122 ~~l~~~~~~~-~~~~~~~~~~~~~~~l~~grvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (227)
T 3tql_A 122 SYLQDSFGNS-ITIQRYPSEEDALMDLTSGRVDAVVGDTPLIKQWLKQNGRREYVLIGKPVNDPNYFGKGVGIAVKKGNQ 200 (227)
T ss_dssp HHHHHHHGGG-SEEEEESSHHHHHHHHTTTSSSEEESCHHHHHHHHHHTTCCSEEEEEEECCCGGGCCSCBCCEEETTCH
T ss_pred HHHHHhcccc-ceEEEcCCHHHHHHHHHcCCcCEEEeChHHHHHHHHhCCCCCEEEecCcccCccccccceEEEEcCCCH
Confidence 8886654211 5778899999999999999999999999999998887553 777654433 3356899999998
Q ss_pred -chhHHHHHHHhccccccHHHHHHhhc
Q 002371 775 -LAIDMSTAILTLSENGELQRIHDKWL 800 (930)
Q Consensus 775 -l~~~~n~~i~~l~e~G~~~~~~~~~~ 800 (930)
+.+.||++|.++.++|.++++.++|+
T Consensus 201 ~l~~~l~~~l~~l~~~g~~~~i~~k~~ 227 (227)
T 3tql_A 201 ALLLKLNKALAAIKANGVYAAIVQKYF 227 (227)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhCChHHHHHHhhC
Confidence 99999999999999999999999996
No 55
>1ii5_A SLR1257 protein; membrane protein; HET: GLU; 1.60A {Synechocystis SP} SCOP: c.94.1.1 PDB: 1iit_A 1iiw_A
Probab=99.86 E-value=3.4e-21 Score=199.45 Aligned_cols=218 Identities=21% Similarity=0.358 Sum_probs=189.9
Q ss_pred CcceEEEecCcccccccEEe--ecCcceEEEEeHHHHHHHHHHCCCcccEEEEeCCCCCCCCCHHHHHHHHHcCcccEEE
Q 002371 461 GRQLRIGVPNRVSYRDFVFK--VNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAV 538 (930)
Q Consensus 461 g~~lrv~v~~~~~~~p~~~~--~~~~~~~~G~~~dll~~l~~~ln~~~~~~~~~~~~~~~n~~~~~l~~~l~~g~~D~~~ 538 (930)
.++|+||+. +|+||.+. +. ++.+.|+++|+++.+++++|++++++.. ++|.+++.++.+|++|+++
T Consensus 3 ~~~l~v~~~---~~~P~~~~~~~~-~g~~~G~~~dl~~~i~~~~g~~~~~~~~--------~~~~~~~~~l~~g~~D~~~ 70 (233)
T 1ii5_A 3 AMALKVGVV---GNPPFVFYGEGK-NAAFTGISLDVWRAVAESQKWNSEYVRQ--------NSISAGITAVAEGELDILI 70 (233)
T ss_dssp SCCEEEEEC---CCTTTCEEC------CEESHHHHHHHHHHHHHTCCEEEEEC--------SCHHHHHHHHHTTSCSEEE
T ss_pred CceEEEEec---CCCCeEEEecCC-CCCEEEEeHHHHHHHHHHcCCcEEEEEe--------CCHHHHHHHHHCCCcCEEE
Confidence 468999997 48999987 43 6889999999999999999977655543 3699999999999999999
Q ss_pred ecEEEecCcc--ceeeecccccccceEEEEeccCCCcCcceecccCchhHHHHHHHHHHHHHHhhhheeeccCCCCCCCC
Q 002371 539 GDIAIVTNRT--KAVDFTQPYIESGLVVVAPVRKLNSSAWAFLRPFTPLMWAVTGVFFLVVGTVVWILEHRLNDEFRGPP 616 (930)
Q Consensus 539 ~~~~~t~~R~--~~vdfs~p~~~~~~~~~v~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 616 (930)
+++..+++|. +.++||.||.....++++++...
T Consensus 71 ~~~~~~~~r~~~~~~~~s~p~~~~~~~~~~~~~~~--------------------------------------------- 105 (233)
T 1ii5_A 71 GPISVTPERAAIEGITFTQPYFSSGIGLLIPGTAT--------------------------------------------- 105 (233)
T ss_dssp EEEECCHHHHTSTTEEECCCCEEEEEEEEEEGGGT---------------------------------------------
T ss_pred eeeecCccccccceeEEccceeecCeEEEEECCCC---------------------------------------------
Confidence 8889999998 99999999999999999987761
Q ss_pred cccchhhHHHHHHHhhccccCCcccchhHHHHHHHHHHHHHhhhhhhhhhheeeeeccccCCCCChHHhhhCCCeEEEEe
Q 002371 617 RKQIVTVLWFSFSTMFFAHRENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIDTLMTSNDRVGYQV 696 (930)
Q Consensus 617 ~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~s~~~i~~~~ 696 (930)
..|++++||. |++||+..
T Consensus 106 ------------------------------------------------------------~~i~~~~dL~--g~~v~~~~ 123 (233)
T 1ii5_A 106 ------------------------------------------------------------PLFRSVGDLK--NKEVAVVR 123 (233)
T ss_dssp ------------------------------------------------------------TTCSSGGGGT--TCEEEEET
T ss_pred ------------------------------------------------------------CCCCCHHHhC--CCeEEEEC
Confidence 2788999995 89999999
Q ss_pred CchhHHHHHHhcCCCccceEeCCCHHHHHHHHHcCCcEEEEccchhhHHHHhcCc--ceEEeCCccccCccEEEecCCCc
Q 002371 697 GSFAENYLIEELSIPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSDHC--QFSVRGQEFTKSGWGFAFPRDSP 774 (930)
Q Consensus 697 ~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~~k~sp 774 (930)
|+....++.+. ..+++.+.+.++++++|.+|++|+++.+...+.+++++.. ++.+++..+...+++++++|++|
T Consensus 124 g~~~~~~l~~~----~~~~~~~~~~~~~~~~l~~g~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 199 (233)
T 1ii5_A 124 DTTAVDWANFY----QADVRETNNLTAAITLLQKKQVEAVMFDRPALIYYTRQNPNLNLEVTEIRVSLEPYGFVLKENSP 199 (233)
T ss_dssp TSHHHHHHHHT----TCEEEEESSHHHHHHHHHTTSCSEEEEEHHHHHHHHHHCGGGCEEECSCCSEEEEEEEEEETTCT
T ss_pred CccHHHHHHHc----CCCeEEcCCHHHHHHHHHcCCccEEEeCHHHHHHHHHhCCCCcEEEeCccccccceEEEEcCCch
Confidence 99988888553 3467788999999999999999999999999999888764 68888877777789999999999
Q ss_pred chhHHHHHHHhccccccHHHHHHhhcc
Q 002371 775 LAIDMSTAILTLSENGELQRIHDKWLR 801 (930)
Q Consensus 775 l~~~~n~~i~~l~e~G~~~~~~~~~~~ 801 (930)
+.+.+|++|.+|.++|.++++.++|+.
T Consensus 200 l~~~~~~~l~~l~~~g~~~~i~~k~~~ 226 (233)
T 1ii5_A 200 LQKTINVEMLNLLYSRVIAEFTERWLG 226 (233)
T ss_dssp THHHHHHHHHHHHHTTHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCCcHHHHHHHHcC
Confidence 999999999999999999999999997
No 56
>4eq9_A ABC transporter substrate-binding protein-amino A transport; structural genomics, niaid; HET: GSH; 1.40A {Streptococcus pneumoniae}
Probab=99.86 E-value=2e-21 Score=203.12 Aligned_cols=224 Identities=14% Similarity=0.212 Sum_probs=191.5
Q ss_pred CCcceEEEecCcccccccEEeecCcceEEEEeHHHHHHHHHHCC-CcccEEEEeCCCCCCCCCHHHHHHHHHcCcccEEE
Q 002371 460 NGRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLP-YAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAV 538 (930)
Q Consensus 460 ~g~~lrv~v~~~~~~~p~~~~~~~~~~~~G~~~dll~~l~~~ln-~~~~~~~~~~~~~~~n~~~~~l~~~l~~g~~D~~~ 538 (930)
..++|+||+.. .|+||.+. . ++.+.|+++|+++.+++++| ++++++.. +|.+++.++.+|++|+++
T Consensus 6 ~~~~l~v~~~~--~~~P~~~~-~-~g~~~G~~~dl~~~i~~~~g~~~~~~~~~---------~~~~~~~~l~~g~~D~~~ 72 (246)
T 4eq9_A 6 SKKEIIVATNG--SPRPFIYE-E-NGELTGYEIEVVRAIFKDSDKYDVKFEKT---------EWSGVFAGLDADRYNMAV 72 (246)
T ss_dssp -CEEEEEEECC--CSTTTSEE-E-TTEEESHHHHHHHHHHTTCSSEEEEEEEC---------CHHHHHHHHHTTSCSEEC
T ss_pred CCCEEEEEeCC--CcCCeEEc-C-CCCCcccHHHHHHHHHHHcCCceEEEEeC---------CHHHHHHHHhCCCcCEEe
Confidence 35789999986 78999994 3 78999999999999999999 88666554 499999999999999999
Q ss_pred ecEEEecCccceeeecccccccceEEEEeccCCCcCcceecccCchhHHHHHHHHHHHHHHhhhheeeccCCCCCCCCcc
Q 002371 539 GDIAIVTNRTKAVDFTQPYIESGLVVVAPVRKLNSSAWAFLRPFTPLMWAVTGVFFLVVGTVVWILEHRLNDEFRGPPRK 618 (930)
Q Consensus 539 ~~~~~t~~R~~~vdfs~p~~~~~~~~~v~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 618 (930)
+++..+++|.+.+.||.||.....++++++..
T Consensus 73 ~~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~------------------------------------------------ 104 (246)
T 4eq9_A 73 NNLSYTKERAEKYLYAAPIAQNPNVLVVKKDD------------------------------------------------ 104 (246)
T ss_dssp SSCCCCHHHHHHEEECCCCEECCEEEEEETTC------------------------------------------------
T ss_pred cccccChhhhhceeeccceecCceEEEEECCC------------------------------------------------
Confidence 88999999999999999999999999998755
Q ss_pred cchhhHHHHHHHhhccccCCcccchhHHHHHHHHHHHHHhhhhhhhhhheeeeeccccCCCCChHHhhhCCCeEEEEeCc
Q 002371 619 QIVTVLWFSFSTMFFAHRENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIDTLMTSNDRVGYQVGS 698 (930)
Q Consensus 619 ~~~~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~s~~~i~~~~~s 698 (930)
.+|++++||. |++||+..|+
T Consensus 105 ----------------------------------------------------------~~i~~~~dL~--g~~i~~~~g~ 124 (246)
T 4eq9_A 105 ----------------------------------------------------------SSIKSLDDIG--GKSTEVVQAT 124 (246)
T ss_dssp ----------------------------------------------------------CSCSSGGGCT--TCEEEECTTC
T ss_pred ----------------------------------------------------------CCCCCHHHhC--CCEEEEecCc
Confidence 5788999996 8999999999
Q ss_pred hhHHHHHH---hcCCCccceE-eCCCHHHHHHHHHcCCcEEEEccchhhHHHHhcCc--ceEEeCCccccCc-cEEEecC
Q 002371 699 FAENYLIE---ELSIPKSRLV-ALGSPEEYAIALENRTVAAVVDERPYIDLFLSDHC--QFSVRGQEFTKSG-WGFAFPR 771 (930)
Q Consensus 699 ~~~~~l~~---~~~~~~~~~~-~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~-~~~~~~k 771 (930)
....++.+ ........+. ...+.++++++|.+|++|+++.+...+.+++++.. ++.++.......+ ++++++|
T Consensus 125 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~g~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 204 (246)
T 4eq9_A 125 TSAKQLEAYNAEHTDNPTILNYTKADFQQIMVRLSDGQFDYKIFDKIGVETVIKNQGLDNLKVIELPSDQQPYVYPLLAQ 204 (246)
T ss_dssp HHHHHHHHHHHHCTTSCCEEEECCCCHHHHHHHHHTTSSSEEEEEHHHHHHHHHHHTCTTEEEEECCCSSCCEECCEEET
T ss_pred cHHHHHHHHHhhCCCcceEEEecCCCHHHHHHHHHcCCceEEEecHHHHHHHHHhCCCCCceEecCcCCCCCcEEEEEcC
Confidence 88888865 3322223344 23589999999999999999999999999887744 6888877666555 8899999
Q ss_pred CCc-chhHHHHHHHhccccccHHHHHHhhcccCC
Q 002371 772 DSP-LAIDMSTAILTLSENGELQRIHDKWLRKKA 804 (930)
Q Consensus 772 ~sp-l~~~~n~~i~~l~e~G~~~~~~~~~~~~~~ 804 (930)
++| +++.||++|.++.++|.+++|.++|+....
T Consensus 205 ~~~~l~~~ln~~l~~l~~~g~~~~i~~k~~~~~~ 238 (246)
T 4eq9_A 205 GQDELKSFVDKRIKELYKDGTLEKLSKQFFGDTY 238 (246)
T ss_dssp TCHHHHHHHHHHHHHHHHTTHHHHHHHHHHSSCC
T ss_pred CCHHHHHHHHHHHHHHHhCCcHHHHHHHhcCCCC
Confidence 998 999999999999999999999999998433
No 57
>3h7m_A Sensor protein; histidine kinase sensor domain, kinase, phosphoprotein, transferase; 2.40A {Geobacter sulfurreducens} SCOP: c.94.1.0
Probab=99.86 E-value=3.9e-21 Score=199.14 Aligned_cols=219 Identities=19% Similarity=0.312 Sum_probs=193.9
Q ss_pred CCcceEEEecCcccccccEEeecCcceEEEEeHHHHHHHHHHCCCcccEEEEeCCCCCCCCCHHHHHHHHHcCcccEEEe
Q 002371 460 NGRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVG 539 (930)
Q Consensus 460 ~g~~lrv~v~~~~~~~p~~~~~~~~~~~~G~~~dll~~l~~~ln~~~~~~~~~~~~~~~n~~~~~l~~~l~~g~~D~~~~ 539 (930)
+.++|+||+.. .|+||.+.+. ++.+.|+++|+++.+++++|++++++.. +|.+++.++.+|++|++ .
T Consensus 9 ~~~~l~v~~~~--~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~g~~~~~~~~---------~~~~~~~~l~~g~~D~~-~ 75 (234)
T 3h7m_A 9 RHRTIVVGGDR--DYPPYEFIDQ-NGKPAGYNVELTRAIAEVMGMTVEFRLG---------AWSEMFSALKSGRVDVL-Q 75 (234)
T ss_dssp SSSCEEEEEET--EETTTEEECT-TSCEESHHHHHHHHHHHHHTCCEEEEEE---------CGGGHHHHHHTTSSSEE-E
T ss_pred CCCEEEEEecC--CCCCeEEECC-CCCEeeeEHHHHHHHHHHcCCceEEEeC---------CHHHHHHHHhCCCeeEE-E
Confidence 46789999965 7999999875 7889999999999999999988777654 49999999999999996 5
Q ss_pred cEEEecCccceeeecccccccceEEEEeccCCCcCcceecccCchhHHHHHHHHHHHHHHhhhheeeccCCCCCCCCccc
Q 002371 540 DIAIVTNRTKAVDFTQPYIESGLVVVAPVRKLNSSAWAFLRPFTPLMWAVTGVFFLVVGTVVWILEHRLNDEFRGPPRKQ 619 (930)
Q Consensus 540 ~~~~t~~R~~~vdfs~p~~~~~~~~~v~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 619 (930)
++..+++|.+.+.||.||.....++++++..
T Consensus 76 ~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~------------------------------------------------- 106 (234)
T 3h7m_A 76 GISWSEKRARQIDFTPPHTIVYHAIFARRDS------------------------------------------------- 106 (234)
T ss_dssp EEECCHHHHTTEEEEEEEEEEEEEEEEESSS-------------------------------------------------
T ss_pred eccCCHhHHhhcCCCccccccceEEEEECCC-------------------------------------------------
Confidence 6899999999999999999999999998777
Q ss_pred chhhHHHHHHHhhccccCCcccchhHHHHHHHHHHHHHhhhhhhhhhheeeeeccccCCCCChHHhhhCCCeEEEEeCch
Q 002371 620 IVTVLWFSFSTMFFAHRENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIDTLMTSNDRVGYQVGSF 699 (930)
Q Consensus 620 ~~~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~s~~~i~~~~~s~ 699 (930)
+.+++++||. |++||+..|+.
T Consensus 107 ---------------------------------------------------------~~~~~~~dL~--g~~i~~~~g~~ 127 (234)
T 3h7m_A 107 ---------------------------------------------------------PPAAGLEDLR--GRKVALHRDGI 127 (234)
T ss_dssp ---------------------------------------------------------CCCSSGGGGT--TSCEEEETTSH
T ss_pred ---------------------------------------------------------CCCCCHHHhC--CCEEEEEeCch
Confidence 4589999995 88999999999
Q ss_pred hHHHHHHhcCCCccceEeCCCHHHHHHHHHcCCcEEEEccchhhHHHHhcC--cceEEeCCccccCccEEEecCCCc-ch
Q 002371 700 AENYLIEELSIPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSDH--CQFSVRGQEFTKSGWGFAFPRDSP-LA 776 (930)
Q Consensus 700 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~~~k~sp-l~ 776 (930)
...++.+.. ...+++.+++.++++++|.+|++|+++.+...+.+++++. .++.++...+...+++++++|++| ++
T Consensus 128 ~~~~l~~~~--~~~~~~~~~~~~~~~~~l~~g~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 205 (234)
T 3h7m_A 128 MHEYLAERG--YGKDLVLTPTPADALRLLAAGGCDYAVVAMVPGMYIIRENRLTNLVPVARSIAAQRYGYAVRQGDAELL 205 (234)
T ss_dssp HHHHHHTTT--CGGGEEEESSHHHHHHHHHTTSSSEEEEEHHHHHHHHHHTTCTTEEEEEEEEEEEEEEEEEETTCHHHH
T ss_pred HHHHHHhcC--CCceEEEeCCHHHHHHHHHcCCceEEEeccHHHHHHHHhcCCCceEEeccccCCCceEEEEeCCCHHHH
Confidence 888885432 3467888999999999999999999999999999888764 368888777778889999999998 99
Q ss_pred hHHHHHHHhccccccHHHHHHhhcc
Q 002371 777 IDMSTAILTLSENGELQRIHDKWLR 801 (930)
Q Consensus 777 ~~~n~~i~~l~e~G~~~~~~~~~~~ 801 (930)
+.||++|.++.++|.++++.++|+.
T Consensus 206 ~~l~~~l~~l~~~g~~~~i~~k~~~ 230 (234)
T 3h7m_A 206 ARFSEGLAILRKTGQYEAIRAKWLG 230 (234)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHcCcHHHHHHHhcc
Confidence 9999999999999999999999997
No 58
>3mpk_A Virulence sensor protein BVGS; venus flytrap, sensor domain, signaling protein; 2.04A {Bordetella pertussis} PDB: 3mpl_A
Probab=99.85 E-value=5.5e-21 Score=202.66 Aligned_cols=219 Identities=19% Similarity=0.266 Sum_probs=191.8
Q ss_pred CCcceEEEecCcccccccEEeecCcceEEEEeHHHHHHHHHHCCCcccEEEEeCCCCCCCCCHHHHHHHHHcCcccEEEe
Q 002371 460 NGRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVG 539 (930)
Q Consensus 460 ~g~~lrv~v~~~~~~~p~~~~~~~~~~~~G~~~dll~~l~~~ln~~~~~~~~~~~~~~~n~~~~~l~~~l~~g~~D~~~~ 539 (930)
+.++||||+.. +|+||.+.+. ++.+.|+++|+++.+++++|++++++.. .+|.+++.++.+|++|++.
T Consensus 30 ~~~~l~v~~~~--~~~P~~~~~~-~g~~~G~~~dl~~~i~~~lg~~~~~~~~--------~~~~~~~~~l~~G~~D~~~- 97 (267)
T 3mpk_A 30 DHPVVKVAVLN--LFAPFTLFRT-DEQFGGISAAVLQLLQLRTGLDFEIIGV--------DTVEELIAKLRSGEADMAG- 97 (267)
T ss_dssp HCSEEEEEEET--EETTTEECCT-TCCCBSHHHHHHHHHHHHHCCEEEEEEE--------SSHHHHHHHHHHTSCSEEE-
T ss_pred hCCcEEEEeCC--CCCCeEEECC-CCcEeeeHHHHHHHHHHHHCCeEEEEec--------CCHHHHHHHHHCCCccEEe-
Confidence 45789999975 7999999875 6889999999999999999977666543 4699999999999999976
Q ss_pred cEEEecCccceeeecccccccceEEEEeccCCCcCcceecccCchhHHHHHHHHHHHHHHhhhheeeccCCCCCCCCccc
Q 002371 540 DIAIVTNRTKAVDFTQPYIESGLVVVAPVRKLNSSAWAFLRPFTPLMWAVTGVFFLVVGTVVWILEHRLNDEFRGPPRKQ 619 (930)
Q Consensus 540 ~~~~t~~R~~~vdfs~p~~~~~~~~~v~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 619 (930)
++..+++|.+.+.||.||...+.++++++..
T Consensus 98 ~~~~t~~r~~~~~fs~p~~~~~~~l~~~~~~------------------------------------------------- 128 (267)
T 3mpk_A 98 ALFVNSARESFLSFSRPYVRNGMVIVTRQDP------------------------------------------------- 128 (267)
T ss_dssp EEECCGGGTTTEEECSCSEEECEEEEEESST-------------------------------------------------
T ss_pred cccCChhhhcceEechhhccCceEEEEECCC-------------------------------------------------
Confidence 6999999999999999999999999998876
Q ss_pred chhhHHHHHHHhhccccCCcccchhHHHHHHHHHHHHHhhhhhhhhhheeeeeccccCCCCChHHhhhCCCeEEEEeCch
Q 002371 620 IVTVLWFSFSTMFFAHRENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIDTLMTSNDRVGYQVGSF 699 (930)
Q Consensus 620 ~~~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~s~~~i~~~~~s~ 699 (930)
+.|++++||. |++||+..|+.
T Consensus 129 ---------------------------------------------------------~~i~~~~dL~--g~~i~v~~g~~ 149 (267)
T 3mpk_A 129 ---------------------------------------------------------DAPVDADHLD--GRTVALVRNSA 149 (267)
T ss_dssp ---------------------------------------------------------TSCSSGGGCT--TCEEEEETTCT
T ss_pred ---------------------------------------------------------CCCCCHHHHC--CCEEEEeCCch
Confidence 5689999996 89999999999
Q ss_pred hHHHHHHhcCCCccceEeCCCHHHHHHHHHcCCcEEEEccchhhHHHHhc--CcceEEeCCcc-ccCccEEEecCCCc-c
Q 002371 700 AENYLIEELSIPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSD--HCQFSVRGQEF-TKSGWGFAFPRDSP-L 775 (930)
Q Consensus 700 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~--~~~l~~~~~~~-~~~~~~~~~~k~sp-l 775 (930)
...++.+.. +..+++.+++.++++++|.+|++||++.+...+.+++++ ..++.+..... ...+++++++|++| +
T Consensus 150 ~~~~l~~~~--~~~~~~~~~~~~~~l~~L~~GrvDa~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~~~~l 227 (267)
T 3mpk_A 150 AIPLLQRRY--PQAKVVTADNPSEAMLMVANGQADAVVQTQISASYYVNRYFAGKLRIASALDLPPAEIALATTRGQTEL 227 (267)
T ss_dssp HHHHHHHHC--TTSEEEEESSHHHHHHHHHHTSCSEEEEEHHHHHHHHHHHCTTTEEEEEECSSCCEEEEEEEETTCHHH
T ss_pred hHHHHHHhC--CCcEEEEeCCHHHHHHHHHcCCCCEEEecHHHHHHHHHhcCCCceEEEeccCCCceeEEEEEcCCCHHH
Confidence 999886644 456788899999999999999999999999999998887 44677776533 36678999999999 9
Q ss_pred hhHHHHHHHhccccccHHHHHHhhcc
Q 002371 776 AIDMSTAILTLSENGELQRIHDKWLR 801 (930)
Q Consensus 776 ~~~~n~~i~~l~e~G~~~~~~~~~~~ 801 (930)
.+.||++|.++.++| ++++.++|+.
T Consensus 228 ~~~ln~~l~~l~~~~-~~~i~~kw~~ 252 (267)
T 3mpk_A 228 MSILNKALYSISNDE-LASIISRWRG 252 (267)
T ss_dssp HHHHHHHHHTSCHHH-HHHHHHTTC-
T ss_pred HHHHHHHHHhCCHHH-HHHHHHhhcc
Confidence 999999999999997 9999999998
No 59
>1lst_A Lysine, arginine, ornithine-binding protein; amino-acid binding protein; HET: LYS; 1.80A {Salmonella typhimurium} SCOP: c.94.1.1 PDB: 2lao_A 1lag_E* 1lah_E 1laf_E 1hsl_A* 1hpb_P*
Probab=99.85 E-value=6.5e-21 Score=198.28 Aligned_cols=221 Identities=18% Similarity=0.305 Sum_probs=187.2
Q ss_pred CcceEEEecCcccccccEEeecCcceEEEEeHHHHHHHHHHCCCcccEEEEeCCCCCCCCCHHHHHHHHHcCcccEEEec
Q 002371 461 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGD 540 (930)
Q Consensus 461 g~~lrv~v~~~~~~~p~~~~~~~~~~~~G~~~dll~~l~~~ln~~~~~~~~~~~~~~~n~~~~~l~~~l~~g~~D~~~~~ 540 (930)
.++|+||+.. .|+||.+.+. ++.+.|+++|+++.+++++|++++++. .+|.+++..+.+|++|+++++
T Consensus 3 ~~~l~v~~~~--~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~g~~~~~~~---------~~~~~~~~~l~~g~~D~~~~~ 70 (239)
T 1lst_A 3 PQTVRIGTDT--TYAPFSSKDA-KGEFIGFDIDLGNEMCKRMQVKCTWVA---------SDFDALIPSLKAKKIDAIISS 70 (239)
T ss_dssp CSEEEEEECS--CBTTTBEECT-TCCEESHHHHHHHHHHHHHTCEEEEEE---------CCGGGHHHHHHTTSCSEECSS
T ss_pred cceEEEEECC--CcCCeeEECC-CCCEeeEHHHHHHHHHHHHCCeEEEEe---------CCHHHHHHHHhCCCCCEEEEC
Confidence 4689999964 7999999875 688999999999999999997755554 359999999999999999988
Q ss_pred EEEecCccceeeecccccccceEEEEeccCCCcCcceecccCchhHHHHHHHHHHHHHHhhhheeeccCCCCCCCCcccc
Q 002371 541 IAIVTNRTKAVDFTQPYIESGLVVVAPVRKLNSSAWAFLRPFTPLMWAVTGVFFLVVGTVVWILEHRLNDEFRGPPRKQI 620 (930)
Q Consensus 541 ~~~t~~R~~~vdfs~p~~~~~~~~~v~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (930)
+..+++|.+.++||.||.....++++++..
T Consensus 71 ~~~t~~r~~~~~~s~p~~~~~~~l~~~~~~-------------------------------------------------- 100 (239)
T 1lst_A 71 LSITDKRQQEIAFSDKLYAADSRLIAAKGS-------------------------------------------------- 100 (239)
T ss_dssp CBCCHHHHHHCEECSCSBCCCEEEEEETTC--------------------------------------------------
T ss_pred cCcCHHHhhceeecccceeCceEEEEeCCC--------------------------------------------------
Confidence 999999999999999999999999998766
Q ss_pred hhhHHHHHHHhhccccCCcccchhHHHHHHHHHHHHHhhhhhhhhhheeeeeccccCCCCChHHhhhCCCeEEEEeCchh
Q 002371 621 VTVLWFSFSTMFFAHRENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIDTLMTSNDRVGYQVGSFA 700 (930)
Q Consensus 621 ~~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~s~~~i~~~~~s~~ 700 (930)
+...+++||. |++||+..|+..
T Consensus 101 --------------------------------------------------------~~~~~~~dL~--g~~v~~~~g~~~ 122 (239)
T 1lst_A 101 --------------------------------------------------------PIQPTLESLK--GKHVGVLQGSTQ 122 (239)
T ss_dssp --------------------------------------------------------CCCSSHHHHT--TCEEEEETTSHH
T ss_pred --------------------------------------------------------CCCCCHHHhC--CCEEEEEcCccH
Confidence 2225899995 889999999998
Q ss_pred HHHHHHhcCCCccceEeCCCHHHHHHHHHcCCcEEEEccchhhHH-HHhcC--cceEEeCCcccc-----CccEEEecCC
Q 002371 701 ENYLIEELSIPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDL-FLSDH--CQFSVRGQEFTK-----SGWGFAFPRD 772 (930)
Q Consensus 701 ~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~-~~~~~--~~l~~~~~~~~~-----~~~~~~~~k~ 772 (930)
..++.+.......+++.+++.++++++|.+|++|+++.+...+.+ ++.+. .++.+++..+.. .+++++++|+
T Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~G~vDa~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~k~ 202 (239)
T 1lst_A 123 EAYANDNWRTKGVDVVAYANQDLIYSDLTAGRLDAALQDEVAASEGFLKQPAGKEYAFAGPSVKDKKYFGDGTGVGLRKD 202 (239)
T ss_dssp HHHHHHHTGGGTCEEEEESSHHHHHHHHHTTSCSEEEEEHHHHHHHTTTSGGGTTEEECSSCBCCHHHHCSSBCCEECTT
T ss_pred HHHHHHhcccCCCeEEEcCCHHHHHHHHHcCCCCEEEeCcHHHHHHHHhccCCCceEEeccccccccccCcceEEEEeCC
Confidence 888866542234567888999999999999999999999888754 45443 358777765543 3688999999
Q ss_pred Cc-chhHHHHHHHhccccccHHHHHHhhcc
Q 002371 773 SP-LAIDMSTAILTLSENGELQRIHDKWLR 801 (930)
Q Consensus 773 sp-l~~~~n~~i~~l~e~G~~~~~~~~~~~ 801 (930)
+| +.+.||++|.++.++|.++++.++|+.
T Consensus 203 ~~~l~~~~~~~l~~l~~~G~~~~i~~k~~~ 232 (239)
T 1lst_A 203 DTELKAAFDKALTELRQDGTYDKMAKKYFD 232 (239)
T ss_dssp CHHHHHHHHHHHHHHHHTTHHHHHHHTTCS
T ss_pred CHHHHHHHHHHHHHHHHCccHHHHHHHHcC
Confidence 98 999999999999999999999999998
No 60
>1wdn_A GLNBP, glutamine binding protein; closed form, complex, peptide, complex (binding protein/peptide); 1.94A {Escherichia coli} SCOP: c.94.1.1 PDB: 1ggg_A
Probab=99.85 E-value=1e-20 Score=194.70 Aligned_cols=217 Identities=26% Similarity=0.454 Sum_probs=190.8
Q ss_pred cceEEEecCcccccccEEeecCcceEEEEeHHHHHHHHHHCCCcccEEEEeCCCCCCCCCHHHHHHHHHcCcccEEEecE
Q 002371 462 RQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGDI 541 (930)
Q Consensus 462 ~~lrv~v~~~~~~~p~~~~~~~~~~~~G~~~dll~~l~~~ln~~~~~~~~~~~~~~~n~~~~~l~~~l~~g~~D~~~~~~ 541 (930)
++|+||+.. +|+||.+.++ +++.|+++|+++.+++++|++++++.. +|.+++.++.+|++|++++++
T Consensus 3 ~~l~v~~~~--~~~P~~~~~~--g~~~G~~~dl~~~~~~~~g~~~~~~~~---------~~~~~~~~l~~g~~D~~~~~~ 69 (226)
T 1wdn_A 3 KKLVVATDT--AFVPFEFKQG--DLYVGFDVDLWAAIAKELKLDYELKPM---------DFSGIIPALQTKNVDLALAGI 69 (226)
T ss_dssp -CEEEEEES--SBTTTBEEET--TEEESHHHHHHHHHHHHHTCCEEEEEE---------CGGGHHHHHHTTSSSEEEEEE
T ss_pred ceEEEEECC--CCCCeeEecC--CcEEEeeHHHHHHHHHHhCCEEEEEEC---------CHHHHHHHHhCCCCCEEEEcC
Confidence 579999985 7999999873 799999999999999999987666643 499999999999999999888
Q ss_pred EEecCccceeeecccccccceEEEEeccCCCcCcceecccCchhHHHHHHHHHHHHHHhhhheeeccCCCCCCCCcccch
Q 002371 542 AIVTNRTKAVDFTQPYIESGLVVVAPVRKLNSSAWAFLRPFTPLMWAVTGVFFLVVGTVVWILEHRLNDEFRGPPRKQIV 621 (930)
Q Consensus 542 ~~t~~R~~~vdfs~p~~~~~~~~~v~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (930)
..+++|.+.+.|+.||.....++++++..
T Consensus 70 ~~~~~r~~~~~~~~p~~~~~~~~~~~~~~--------------------------------------------------- 98 (226)
T 1wdn_A 70 TITDERKKAIDFSDGYYKSGLLVMVKANN--------------------------------------------------- 98 (226)
T ss_dssp ECCHHHHTTSEECSCCEEEEEEEEEETTC---------------------------------------------------
T ss_pred cCCHHHhCccccccchhcCceEEEEeCCC---------------------------------------------------
Confidence 88999999999999999999999998766
Q ss_pred hhHHHHHHHhhccccCCcccchhHHHHHHHHHHHHHhhhhhhhhhheeeeeccccCCCCChHHhhhCCCeEEEEeCchhH
Q 002371 622 TVLWFSFSTMFFAHRENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIDTLMTSNDRVGYQVGSFAE 701 (930)
Q Consensus 622 ~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~s~~~i~~~~~s~~~ 701 (930)
+.+++++||. |++||+..|+...
T Consensus 99 -------------------------------------------------------~~i~~~~dL~--g~~i~~~~g~~~~ 121 (226)
T 1wdn_A 99 -------------------------------------------------------NDVKSVKDLD--GKVVAVKSGTGSV 121 (226)
T ss_dssp -------------------------------------------------------CSCSSSTTTT--TCEEEEETTSHHH
T ss_pred -------------------------------------------------------CCCCCHHHhC--CCEEEEEcCCcHH
Confidence 4688999995 8899999999988
Q ss_pred HHHHHhcCCCccceEeCCCHHHHHHHHHcCCcEEEEccchhhHHHHhcC--cceEEeCCccccCccEEEecCCCc-chhH
Q 002371 702 NYLIEELSIPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSDH--CQFSVRGQEFTKSGWGFAFPRDSP-LAID 778 (930)
Q Consensus 702 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~~~k~sp-l~~~ 778 (930)
.++.+.. +..+++.+++.++++++|.+|++|+++.+...+.+++++. .++.+++..+....++++++|++| +.+.
T Consensus 122 ~~l~~~~--~~~~~~~~~~~~~~~~~l~~g~vDa~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~k~~~~l~~~ 199 (226)
T 1wdn_A 122 DYAKANI--KTKDLRQFPNIDNAYMELGTNRADAVLHDTPNILYFIKTAGNGQFKAVGDSLEAQQYGIAFPKGSDELRDK 199 (226)
T ss_dssp HHHHHHC--CCSEEEEESSHHHHHHHHHTTSCSEEEEEHHHHHHHHHTTTTTTEEEEEEEEEEEEEEEEECTTCHHHHHH
T ss_pred HHHHHhC--CCceEEEeCCHHHHHHHHHcCCcCEEEeCcHHHHHHHHhCCCCceEEecCCcccCceEEEEeCCCHHHHHH
Confidence 8886543 3456778899999999999999999999999999888775 368887766667788999999986 9999
Q ss_pred HHHHHHhccccccHHHHHHhhcc
Q 002371 779 MSTAILTLSENGELQRIHDKWLR 801 (930)
Q Consensus 779 ~n~~i~~l~e~G~~~~~~~~~~~ 801 (930)
+|++|.++.++|.++++.++|+.
T Consensus 200 ~~~~l~~l~~~g~~~~i~~k~~~ 222 (226)
T 1wdn_A 200 VNGALKTLRENGTYNEIYKKWFG 222 (226)
T ss_dssp HHHHHHHHHHTSHHHHHHHHHHS
T ss_pred HHHHHHHHHhCChHHHHHHHHcC
Confidence 99999999999999999999987
No 61
>4dz1_A DALS D-alanine transporter; D-alanine binding, periplasmic, transport protein; 1.90A {Salmonella enterica} PDB: 3r39_A 4f3s_A
Probab=99.85 E-value=1.2e-20 Score=198.93 Aligned_cols=222 Identities=19% Similarity=0.311 Sum_probs=191.3
Q ss_pred CCcceEEEecCcccccccEEeecCcceEEEEeHHHHHHHHHHCCCcccEEEEeCCCCCCCCCHHHHHHHHHcCcccEEEe
Q 002371 460 NGRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVG 539 (930)
Q Consensus 460 ~g~~lrv~v~~~~~~~p~~~~~~~~~~~~G~~~dll~~l~~~ln~~~~~~~~~~~~~~~n~~~~~l~~~l~~g~~D~~~~ 539 (930)
..++|+||+.. .|+||.+.+. ++.+.|+++|+++.+++++|++++++. .+|.+++..+.+|++|++++
T Consensus 27 ~~~~l~v~~~~--~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~g~~~~~~~---------~~~~~~~~~l~~g~~D~~~~ 94 (259)
T 4dz1_A 27 EGRTLNVAVSP--ASPPMLFKSA-DGKLQGIDLELFSSYCQSRHCKLNITE---------YAWDGMLGAVASGQADVAFS 94 (259)
T ss_dssp TTCEEEEEECC--CBTTTBEECT-TCCEESHHHHHHHHHHHHHTCEEEEEE---------CCHHHHHHHHHHTSSSEEEE
T ss_pred cCCeEEEEECC--CCCCeEEECC-CCCEEEeHHHHHHHHHHHhCCeEEEEE---------cCHHHHHHHHhCCCCCEEEE
Confidence 45789999975 7899999874 789999999999999999997755544 35999999999999999998
Q ss_pred cEEEecCccceeeecccccccceEEEEeccCCCcCcceecccCchhHHHHHHHHHHHHHHhhhheeeccCCCCCCCCccc
Q 002371 540 DIAIVTNRTKAVDFTQPYIESGLVVVAPVRKLNSSAWAFLRPFTPLMWAVTGVFFLVVGTVVWILEHRLNDEFRGPPRKQ 619 (930)
Q Consensus 540 ~~~~t~~R~~~vdfs~p~~~~~~~~~v~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 619 (930)
+++.+++|.+.++||.||...+.+++++++..
T Consensus 95 ~~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~~------------------------------------------------ 126 (259)
T 4dz1_A 95 GISITDKRKKVIDFSEPYYINSFYLVSMANHK------------------------------------------------ 126 (259)
T ss_dssp EEECCHHHHTTEEECCCSEEEEEEEEEETTSC------------------------------------------------
T ss_pred CCcCCHHHhhccccccchhhCceEEEEEcCCC------------------------------------------------
Confidence 89999999999999999999999999987661
Q ss_pred chhhHHHHHHHhhccccCCcccchhHHHHHHHHHHHHHhhhhhhhhhheeeeeccccCCCCChHHhhhCCCeEEEEeCch
Q 002371 620 IVTVLWFSFSTMFFAHRENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIDTLMTSNDRVGYQVGSF 699 (930)
Q Consensus 620 ~~~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~s~~~i~~~~~s~ 699 (930)
..|++++||. |++||+..|+.
T Consensus 127 ---------------------------------------------------------~~i~~~~dL~--g~~v~v~~g~~ 147 (259)
T 4dz1_A 127 ---------------------------------------------------------ITLNNLNELN--KYSIGYPRGMA 147 (259)
T ss_dssp ---------------------------------------------------------CCCCSGGGGG--GSCEEEETTST
T ss_pred ---------------------------------------------------------CCCCCHHHhC--CCEEEEeCCcH
Confidence 4789999996 88999999999
Q ss_pred hHHHHHHhcCC---Cc-cceEeCCCHHHHHHHHHcCCcEEEEccchhhHHHHhc-CcceEEeCCccccCccEEEecCCCc
Q 002371 700 AENYLIEELSI---PK-SRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSD-HCQFSVRGQEFTKSGWGFAFPRDSP 774 (930)
Q Consensus 700 ~~~~l~~~~~~---~~-~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~k~sp 774 (930)
...++.+.... .. .+++.+++.++++++|.+|++||++.+...+.+++++ ..++..........+++++++|+++
T Consensus 148 ~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~G~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 227 (259)
T 4dz1_A 148 YSDLIKNDLEPKGYYSLSKVKLYPTYNETMADLKNGNLDLAFIEEPVYFTFKNKKKMPIESRYVFKNVDQLGIAFKKGSP 227 (259)
T ss_dssp HHHHHHHHTGGGTSCCGGGCEEESSHHHHHHHHHHTSCSEEEEEHHHHHHHHHTSCCCEEEEEEEEEEEEEEEEEETTCH
T ss_pred HHHHHHHhcccccccccceeEecCCHHHHHHHHHcCCCCEEEecHHHHHHHhccCCCceEeecccCCCceEEEEEeCChH
Confidence 88888654321 11 5778889999999999999999999999888777765 3466666655567789999999999
Q ss_pred chhHHHHHHHhccccccHHHHHHhhcc
Q 002371 775 LAIDMSTAILTLSENGELQRIHDKWLR 801 (930)
Q Consensus 775 l~~~~n~~i~~l~e~G~~~~~~~~~~~ 801 (930)
+++.||++|.+ ..++.++++.++|..
T Consensus 228 l~~~ln~~l~~-~g~~~l~~~~~~~~~ 253 (259)
T 4dz1_A 228 VRDDFNLWLKE-QGPQKISGIVDSWMK 253 (259)
T ss_dssp HHHHHHHHHHH-HCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHh-CCCeehHHHHHHHHh
Confidence 99999999999 888999999999987
No 62
>2y7i_A STM4351; arginine-binding protein; HET: ARG; 1.90A {Salmonella enterica subsp}
Probab=99.84 E-value=2.4e-20 Score=192.47 Aligned_cols=218 Identities=22% Similarity=0.398 Sum_probs=189.0
Q ss_pred CCcceEEEecCcccccccEEeecCcceEEEEeHHHHHHHHHHCCCcccEEEEeCCCCCCCCCHHHHHHHHHcCcccEEEe
Q 002371 460 NGRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVG 539 (930)
Q Consensus 460 ~g~~lrv~v~~~~~~~p~~~~~~~~~~~~G~~~dll~~l~~~ln~~~~~~~~~~~~~~~n~~~~~l~~~l~~g~~D~~~~ 539 (930)
..++|+||+.. .|+||.+.+. ++.+.|+++|+++.+++++|++++++. .+|.+++..+.+|++|++++
T Consensus 4 ~a~~l~v~~~~--~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~g~~~~~~~---------~~~~~~~~~l~~g~~D~~~~ 71 (229)
T 2y7i_A 4 SARTLHFGTSA--TYAPYEFVDA-DNKIVGFDIDVANAVCKEMQAECSFTN---------QSFDSLIPSLRFKKFDAVIA 71 (229)
T ss_dssp SCCEEEEEECC--CBTTTBEECT-TSCEESHHHHHHHHHHHHTTCEEEEEE---------CCGGGHHHHHHTTSCSEECS
T ss_pred cCCcEEEEeCC--CcCCceEECC-CCCCcceeHHHHHHHHHHhCCeEEEEE---------cCHHHHHHHHhCCCceEEEe
Confidence 45789999974 7999998875 688999999999999999997765554 35999999999999999987
Q ss_pred cEEEecCccceeeeccccccc-ceEEEEeccCCCcCcceecccCchhHHHHHHHHHHHHHHhhhheeeccCCCCCCCCcc
Q 002371 540 DIAIVTNRTKAVDFTQPYIES-GLVVVAPVRKLNSSAWAFLRPFTPLMWAVTGVFFLVVGTVVWILEHRLNDEFRGPPRK 618 (930)
Q Consensus 540 ~~~~t~~R~~~vdfs~p~~~~-~~~~~v~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 618 (930)
++..+++|.+.+.|+.||... ..++++++.
T Consensus 72 ~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~------------------------------------------------- 102 (229)
T 2y7i_A 72 GMDMTPKREQQVSFSQPYYEGLSAVVVTRKG------------------------------------------------- 102 (229)
T ss_dssp SCBCCHHHHTTSEECSCSBCCCCEEEEEETT-------------------------------------------------
T ss_pred cCccCHHHhcceeeccccccCCcEEEEEeCC-------------------------------------------------
Confidence 788999999999999999999 888888643
Q ss_pred cchhhHHHHHHHhhccccCCcccchhHHHHHHHHHHHHHhhhhhhhhhheeeeeccccCCCCChHHhhhCCCeEEEEeCc
Q 002371 619 QIVTVLWFSFSTMFFAHRENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIDTLMTSNDRVGYQVGS 698 (930)
Q Consensus 619 ~~~~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~s~~~i~~~~~s 698 (930)
. +++++||. |++||+..|+
T Consensus 103 ----------------------------------------------------------~-~~~~~dL~--g~~v~~~~g~ 121 (229)
T 2y7i_A 103 ----------------------------------------------------------A-YHTFADLK--GKKVGLENGT 121 (229)
T ss_dssp ----------------------------------------------------------S-CCSTGGGT--TCEEEEETTS
T ss_pred ----------------------------------------------------------C-CCCHHHHC--CCEEEEecCC
Confidence 2 67889995 8899999999
Q ss_pred hhHHHHHHhcCCCccceEeCCCHHHHHHHHHcCCcEEEEccchhhHHHHhcCcceEEeCCccc-----cCccEEEecCCC
Q 002371 699 FAENYLIEELSIPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSDHCQFSVRGQEFT-----KSGWGFAFPRDS 773 (930)
Q Consensus 699 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~~~~~~k~s 773 (930)
....++.+.. +..+++.+++.++++++|.+|++|+++.+...+.+++++..++.++...+. ..+++++++|++
T Consensus 122 ~~~~~l~~~~--~~~~~~~~~~~~~~~~~l~~grvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (229)
T 2y7i_A 122 THQRYLQDKQ--QAITPVAYDSYLNAFTDLKNNRLEGVFGDVAAIGKWLKNNPDYAIMDERASDPDYYGKGLGIAVRKDN 199 (229)
T ss_dssp HHHHHHHHHC--TTSEEEEESCHHHHHHHHHTTSCSEEEEEHHHHHHHHTTCTTEEECSCCBCCTTTSCCCBCCEECTTC
T ss_pred cHHHHHHHhC--CCCeEEecCCHHHHHHHHHcCCcCEEEechHHHHHHHHhCCCeEEeccccccccccccceEEEEeCCC
Confidence 9888886543 345778889999999999999999999999999999888778888876543 237889999999
Q ss_pred c-chhHHHHHHHhccccccHHHHHHhhcc
Q 002371 774 P-LAIDMSTAILTLSENGELQRIHDKWLR 801 (930)
Q Consensus 774 p-l~~~~n~~i~~l~e~G~~~~~~~~~~~ 801 (930)
| +.+.||++|.++.++|.++++.++|+.
T Consensus 200 ~~l~~~l~~~l~~l~~~g~~~~i~~k~~~ 228 (229)
T 2y7i_A 200 DALLQEINAALDKVKASPEYAQMQEKWFT 228 (229)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhCChHHHHHHHHcC
Confidence 8 999999999999999999999999985
No 63
>2iee_A ORF2, probable ABC transporter extracellular-binding protein YCKB; SR574, NESG, X-RAY, structural genomics, PSI-2; 2.20A {Bacillus subtilis}
Probab=99.83 E-value=8.5e-21 Score=201.68 Aligned_cols=219 Identities=16% Similarity=0.274 Sum_probs=185.5
Q ss_pred CCcceEEEecCcccccccEEeecCc--ceEEEEeHHHHHHHHHHCCCcccEEEEeCCCCCCCCCHHHHHHHHHcCcccEE
Q 002371 460 NGRQLRIGVPNRVSYRDFVFKVNGT--DIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAA 537 (930)
Q Consensus 460 ~g~~lrv~v~~~~~~~p~~~~~~~~--~~~~G~~~dll~~l~~~ln~~~~~~~~~~~~~~~n~~~~~l~~~l~~g~~D~~ 537 (930)
+.++|+||+.. .|+||.+.+.++ +.+.|+++|+++.+++++|++++++.. +|.+++.++.+|++|++
T Consensus 19 ~~~~l~v~~~~--~~pP~~~~~~~~~~g~~~G~~~dl~~~i~~~~g~~v~~~~~---------~~~~~~~~l~~G~~D~~ 87 (271)
T 2iee_A 19 DKGKIVVATSG--TLYPTSYHDTDSGSDKLTGYEVEVVREAAKRLGLKVEFKEM---------GIDGMLTAVNSGQVDAA 87 (271)
T ss_dssp HHTEEEEEECS--CBTTTBEEETTTTCCEEECHHHHHHHHHHHHTTCEEEEEEC---------CSTTHHHHHHHTSSSEE
T ss_pred cCCeEEEEECC--CCCCeeEeCCCCCCCCceeeHHHHHHHHHHHcCCeEEEEEC---------CHHHHHHHHHCCCcCEE
Confidence 35789999975 799999986522 899999999999999999977655543 49999999999999999
Q ss_pred EecEEEecCccceeeecccccccceEEEEeccCCCcCcceecccCchhHHHHHHHHHHHHHHhhhheeeccCCCCCCCCc
Q 002371 538 VGDIAIVTNRTKAVDFTQPYIESGLVVVAPVRKLNSSAWAFLRPFTPLMWAVTGVFFLVVGTVVWILEHRLNDEFRGPPR 617 (930)
Q Consensus 538 ~~~~~~t~~R~~~vdfs~p~~~~~~~~~v~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 617 (930)
++++..+++|.+.++||.||.....++++++...
T Consensus 88 ~~~~~~t~~r~~~~~fs~p~~~~~~~l~~~~~~~---------------------------------------------- 121 (271)
T 2iee_A 88 ANDIDVTKDREEKFAFSTPYKYSYGTAIVRKDDL---------------------------------------------- 121 (271)
T ss_dssp CSSCBCCHHHHTTEEECCCSEEEEEEEEECTTTG----------------------------------------------
T ss_pred EeCCcCChhhccceEEeecceeCCeEEEEECCCC----------------------------------------------
Confidence 9888899999999999999999999999987661
Q ss_pred ccchhhHHHHHHHhhccccCCcccchhHHHHHHHHHHHHHhhhhhhhhhheeeeeccccCCCCChHHhhhCCCeEEEEeC
Q 002371 618 KQIVTVLWFSFSTMFFAHRENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIDTLMTSNDRVGYQVG 697 (930)
Q Consensus 618 ~~~~~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~s~~~i~~~~~ 697 (930)
..|++++||. |++||+..|
T Consensus 122 -----------------------------------------------------------~~i~~~~dL~--g~~i~v~~g 140 (271)
T 2iee_A 122 -----------------------------------------------------------SGIKTLKDLK--GKKAAGAAT 140 (271)
T ss_dssp -----------------------------------------------------------GGCSSGGGGT--TCEEESCTT
T ss_pred -----------------------------------------------------------CCCCCHHHhC--CCEEEEeCC
Confidence 2688999995 899999999
Q ss_pred chhHHHHHHhcCCCccceEeCCCHHHH--HHHHHcCCcEEEEccchhhHHHHh-cC--cceEEe-CCccccCccEEEecC
Q 002371 698 SFAENYLIEELSIPKSRLVALGSPEEY--AIALENRTVAAVVDERPYIDLFLS-DH--CQFSVR-GQEFTKSGWGFAFPR 771 (930)
Q Consensus 698 s~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~l~~g~~~a~~~~~~~~~~~~~-~~--~~l~~~-~~~~~~~~~~~~~~k 771 (930)
+....++.+ .+. +++.+++.+++ +++|.+|++| ++.+...+.+++. +. .++.++ ...+...+++++++|
T Consensus 141 ~~~~~~l~~-~~~---~~~~~~~~~~~~l~~~L~~GrvD-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 215 (271)
T 2iee_A 141 TVYMEVARK-YGA---KEVIYDNATNEQYLKDVANGRTD-VILNDYYLQTLALAAFPDLNITIHPDIKYMPNKQALVMKK 215 (271)
T ss_dssp SHHHHHHHH-TTC---EEEECSSCCHHHHHHHHHHTSSC-EEEEEHHHHHHHHHHCTTSSCEECSSCCEEEEEECCEEET
T ss_pred ccHHHHHHH-cCC---ceEEeCChhhHHHHHHHHcCCcc-EEeccHHHHHHHHHhCCCCceEEecCCCcccceEEEEEcC
Confidence 988888843 332 77888888888 9999999999 6666666655554 43 368887 666777788999999
Q ss_pred CCc-chhHHHHHHHhccccccHHHHHHhhcc
Q 002371 772 DSP-LAIDMSTAILTLSENGELQRIHDKWLR 801 (930)
Q Consensus 772 ~sp-l~~~~n~~i~~l~e~G~~~~~~~~~~~ 801 (930)
++| ++..||++|.+|.++|.+++|.++|+.
T Consensus 216 ~~~~l~~~ln~al~~l~~~G~~~~i~~k~~~ 246 (271)
T 2iee_A 216 SNAALQKKMNEALKEMSKDGSLTKLSKQFFN 246 (271)
T ss_dssp TCHHHHHHHHHHHHHHHHHTHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHhCC
Confidence 998 999999999999999999999999998
No 64
>2q88_A EHUB, putative ABC transporter amino acid-binding prote; substrate-binding protein, compatible solues, ABC-transporte osmoprotection; HET: 4CS; 1.90A {Sinorhizobium meliloti} PDB: 2q89_A*
Probab=99.82 E-value=5e-20 Score=193.96 Aligned_cols=221 Identities=18% Similarity=0.209 Sum_probs=187.5
Q ss_pred CcceEEEecCcccccccEEeecCcceEEEEeHHHHHHHHHHCCCc-ccEEEEeCCCCCCCCCHHHHHHHHHcCcccEEEe
Q 002371 461 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYA-VPYKFIPYGDGHKNPTYSELINQITTGVFDAAVG 539 (930)
Q Consensus 461 g~~lrv~v~~~~~~~p~~~~~~~~~~~~G~~~dll~~l~~~ln~~-~~~~~~~~~~~~~n~~~~~l~~~l~~g~~D~~~~ 539 (930)
.++|+||+. +|+||.+.+. ++.+.|+++|+++.+++++|++ +++... +|.+++..+.+|++|++++
T Consensus 12 ~~~l~v~~~---~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~g~~~~~~~~~---------~~~~~~~~l~~g~~D~~~~ 78 (257)
T 2q88_A 12 QGFARIAIA---NEPPFTAVGA-DGKVSGAAPDVAREIFKRLGVADVVASIS---------EYGAMIPGLQAGRHDAITA 78 (257)
T ss_dssp HTEEEEEEC---CCTTTCEECT-TCCEESHHHHHHHHHHHHTTCCEEEEEEC---------CGGGHHHHHHTTSCSEECS
T ss_pred CCeEEEEcC---CCCCeeEECC-CCCcccccHHHHHHHHHHcCCCeeeEEeC---------CHHHHHHHHHCCCcCEEEe
Confidence 468999996 6899998775 6889999999999999999977 555543 4999999999999999987
Q ss_pred cEEEecCccceeeecccccccceEEEEeccCCCcCcceecccCchhHHHHHHHHHHHHHHhhhheeeccCCCCCCCCccc
Q 002371 540 DIAIVTNRTKAVDFTQPYIESGLVVVAPVRKLNSSAWAFLRPFTPLMWAVTGVFFLVVGTVVWILEHRLNDEFRGPPRKQ 619 (930)
Q Consensus 540 ~~~~t~~R~~~vdfs~p~~~~~~~~~v~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 619 (930)
++..+++|.+.++||.||...+.++++++...
T Consensus 79 ~~~~t~~r~~~~~~s~p~~~~~~~~~~~~~~~------------------------------------------------ 110 (257)
T 2q88_A 79 GLFMKPERCAAVAYSQPILCDAEAFALKKGNP------------------------------------------------ 110 (257)
T ss_dssp CCBCCHHHHTTSEECSCCCEECEEEEEETTCT------------------------------------------------
T ss_pred cccCCHHHHhccccccchhcCceEEEEECCCc------------------------------------------------
Confidence 78999999999999999999999999987761
Q ss_pred chhhHHHHHHHhhccccCCcccchhHHHHHHHHHHHHHhhhhhhhhhheeeeeccccCCCCChHHhhhC-CCeEEEEeCc
Q 002371 620 IVTVLWFSFSTMFFAHRENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIDTLMTS-NDRVGYQVGS 698 (930)
Q Consensus 620 ~~~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~s-~~~i~~~~~s 698 (930)
..+++++||..+ |++||+..|+
T Consensus 111 ---------------------------------------------------------~~i~~~~dL~~~~g~~i~~~~g~ 133 (257)
T 2q88_A 111 ---------------------------------------------------------LGLKSYKDIADNPDAKIGAPGGG 133 (257)
T ss_dssp ---------------------------------------------------------TCCCBHHHHHHCTTCCEEECTTS
T ss_pred ---------------------------------------------------------cCCCCHHHHhccCCceEEEECCc
Confidence 268899999754 7899999999
Q ss_pred hhHHHHHHhcCCCccceEeCCCHHHHHHHHHcCCcEEEEccchhhHHHHhcCc--ceEEeCCccc--cCccEEEecCCCc
Q 002371 699 FAENYLIEELSIPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSDHC--QFSVRGQEFT--KSGWGFAFPRDSP 774 (930)
Q Consensus 699 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~~--~l~~~~~~~~--~~~~~~~~~k~sp 774 (930)
....++.+ .+.+..+++.+++.++++++|.+|++|+++.+...+.+++++.. .+..+.+... ..+++++++|++|
T Consensus 134 ~~~~~l~~-~~~~~~~~~~~~~~~~~~~~l~~grvDa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 212 (257)
T 2q88_A 134 TEEKLALE-AGVPRDRVIVVPDGQSGLKMLQDGRIDVYSLPVLSINDLVSKANDPNVEVLAPVEGAPVYCDGAAFRKGDE 212 (257)
T ss_dssp HHHHHHHH-TTCCGGGEEECSSHHHHHHHHHHTSCSEEEEEHHHHHHHHHHHCCTTEEEECSCBTCCCEEBCCEECGGGH
T ss_pred ccHHHHHh-cCCCCceEEEcCCHHHHHHHHHcCCCcEEEcCHHHHHHHHHhCCCcceeeecccCCccccceEEEEcCCCH
Confidence 98888854 44555678889999999999999999999999999999887643 4555543211 2357789999977
Q ss_pred -chhHHHHHHHhccccccHHHHHHhhc
Q 002371 775 -LAIDMSTAILTLSENGELQRIHDKWL 800 (930)
Q Consensus 775 -l~~~~n~~i~~l~e~G~~~~~~~~~~ 800 (930)
+.+.||++|.++.++|.++++.++|.
T Consensus 213 ~l~~~l~~~l~~~~~~g~~~~i~~k~~ 239 (257)
T 2q88_A 213 ALRDAFDVELAKLKESGEFAKIIEPYG 239 (257)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHGGGT
T ss_pred HHHHHHHHHHHHHHhCCcHHHHHHHhC
Confidence 99999999999999999999999994
No 65
>3qax_A Probable ABC transporter arginine-binding protein; periplasmic, transport PR; HET: ARG; 2.00A {Chlamydophila pneumoniae} PDB: 3g41_A* 3n26_A*
Probab=99.82 E-value=1e-19 Score=192.74 Aligned_cols=218 Identities=21% Similarity=0.297 Sum_probs=192.8
Q ss_pred CCcceEEEecCcccccccEEeecCcceEEEEeHHHHHHHHHHCCCcccEEEEeCCCCCCCCCHHHHHHHHHcCcccEEEe
Q 002371 460 NGRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVG 539 (930)
Q Consensus 460 ~g~~lrv~v~~~~~~~p~~~~~~~~~~~~G~~~dll~~l~~~ln~~~~~~~~~~~~~~~n~~~~~l~~~l~~g~~D~~~~ 539 (930)
..++|+|++.. .|+||.+.+. ++.+.|+++|+++.+++++|++++++. .+|.+++..+.+|++|++++
T Consensus 29 ~~~~l~v~~~~--~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~g~~~~~~~---------~~~~~~~~~l~~g~~D~~~~ 96 (268)
T 3qax_A 29 RNRIWIVGTNA--TYPPFEYVDA-QGEVVGFDIDLAKAISEKLGKQLEVRE---------FAFDALILNLKKHRIDAILA 96 (268)
T ss_dssp --CEEEEEECS--CBTTTBEECT-TSCEESHHHHHHHHHHHHHTCEEEEEE---------CCGGGHHHHHHHTSSSEECS
T ss_pred cCCeEEEEECC--CCCCceEECC-CCCEEEEEHHHHHHHHHHhCCeEEEEe---------cCHHHHHHHHhCCCccEEee
Confidence 35689999976 7899998875 789999999999999999997755544 35999999999999999988
Q ss_pred cEEEecCccceeeeccccc--ccceEEEEeccCCCcCcceecccCchhHHHHHHHHHHHHHHhhhheeeccCCCCCCCCc
Q 002371 540 DIAIVTNRTKAVDFTQPYI--ESGLVVVAPVRKLNSSAWAFLRPFTPLMWAVTGVFFLVVGTVVWILEHRLNDEFRGPPR 617 (930)
Q Consensus 540 ~~~~t~~R~~~vdfs~p~~--~~~~~~~v~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 617 (930)
++..+++|.+.++| .||. ..+.++++++..
T Consensus 97 ~~~~~~~r~~~~~~-~p~~~~~~~~~~~~~~~~----------------------------------------------- 128 (268)
T 3qax_A 97 GMSITPSRQKEIAL-LPYYGDEVQELMVVSKRS----------------------------------------------- 128 (268)
T ss_dssp CCBCCHHHHTTSEE-EEEECCCBCEEEEEEETT-----------------------------------------------
T ss_pred cCccCHhHhcceee-ecceecccceEEEEECCC-----------------------------------------------
Confidence 89999999999999 9999 889999998875
Q ss_pred ccchhhHHHHHHHhhccccCCcccchhHHHHHHHHHHHHHhhhhhhhhhheeeeeccccCCCCChHHhhhCCCeEEEEeC
Q 002371 618 KQIVTVLWFSFSTMFFAHRENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIDTLMTSNDRVGYQVG 697 (930)
Q Consensus 618 ~~~~~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~s~~~i~~~~~ 697 (930)
++|++++||. |++||+..|
T Consensus 129 -----------------------------------------------------------~~i~~~~dL~--g~~i~~~~g 147 (268)
T 3qax_A 129 -----------------------------------------------------------LETPVLPLTQ--YSSVAVQTG 147 (268)
T ss_dssp -----------------------------------------------------------SCSCCCCGGG--SSCEEEETT
T ss_pred -----------------------------------------------------------CCCCCHHHhC--CCEEEEecC
Confidence 5788999996 889999999
Q ss_pred chhHHHHHHhcCCCccceEeCCCHHHHHHHHHcCCcEEEEccchhhHHHHhcCcceEEeCCccccCc----cEEEecCCC
Q 002371 698 SFAENYLIEELSIPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSDHCQFSVRGQEFTKSG----WGFAFPRDS 773 (930)
Q Consensus 698 s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----~~~~~~k~s 773 (930)
+....++.+ .+..+++.+++.++++++|.+|++|+++.+...+.+++++..++.++...+.... ++++++|++
T Consensus 148 ~~~~~~l~~---~~~~~~~~~~~~~~~~~~l~~G~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~ 224 (268)
T 3qax_A 148 TYQEHYLLS---QPGICVRSFDSTLEVIMEVRYGKSPVAVLEPSVGRVVLKDFPNLVATRLELPPECWVLGCGLGVAKDR 224 (268)
T ss_dssp SHHHHHHHT---STTCCEEEESCHHHHHHHHHTTSSSEEEECHHHHHHHGGGCTTEEEEEEECCGGGCBCCEEEEECTTC
T ss_pred cHHHHHHHh---CCCceEEecCCHHHHHHHHHcCCCCEEEecHHHHHHHHHhCCCcEEecCccCcccccccEEEEEeCCC
Confidence 998888854 3456778889999999999999999999999999999988877888877766666 899999999
Q ss_pred c-chhHHHHHHHhccccccHHHHHHhhcc
Q 002371 774 P-LAIDMSTAILTLSENGELQRIHDKWLR 801 (930)
Q Consensus 774 p-l~~~~n~~i~~l~e~G~~~~~~~~~~~ 801 (930)
| +++.+|++|.++.++|.++++.++|+.
T Consensus 225 ~~l~~~l~~~l~~l~~~g~~~~i~~k~~~ 253 (268)
T 3qax_A 225 PEEIQTIQQAITDLKSEGVIQSLTKKWQL 253 (268)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHCCcHHHHHHHHcC
Confidence 8 999999999999999999999999997
No 66
>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme}
Probab=99.82 E-value=5.7e-20 Score=189.36 Aligned_cols=218 Identities=25% Similarity=0.413 Sum_probs=184.0
Q ss_pred cceEEEecCcccccccEEeecCcceEEEEeHHHHHHHHHHCCCcccEEEEeCCCCCCCCCHHHHHHHHHcCcccEEEecE
Q 002371 462 RQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGDI 541 (930)
Q Consensus 462 ~~lrv~v~~~~~~~p~~~~~~~~~~~~G~~~dll~~l~~~ln~~~~~~~~~~~~~~~n~~~~~l~~~l~~g~~D~~~~~~ 541 (930)
++|+||+. +|+||.+. . ++.+.|+++|+++.+++++|++++++.. ++|.+++.++.+|++|++++++
T Consensus 3 ~~l~v~~~---~~~P~~~~-~-~g~~~G~~~dl~~~~~~~~g~~~~~~~~--------~~~~~~~~~l~~g~~D~~~~~~ 69 (228)
T 2pyy_A 3 QPLLVATR---VIPPFVLS-N-KGELSGFSIDLWRSIATQIGIESKLIEY--------SSVPELISAIKDNKVNLGIAAI 69 (228)
T ss_dssp -CEEEEEC---CBTTTBBC-C----CBSHHHHHHHHHHHHHTCCEEEEEC--------SSHHHHHHHHHTTSCSEECSSC
T ss_pred ceEEEEec---CCCCeEEe-c-CCceEEEeHHHHHHHHHHhCCcEEEEEc--------CCHHHHHHHHHCCCcCEEEecc
Confidence 67999997 47888887 3 6789999999999999999977666544 3599999999999999998888
Q ss_pred EEecCccceeeecccccccceEEEEeccCCCcCcceecccCchhHHHHHHHHHHHHHHhhhheeeccCCCCCCCCcccch
Q 002371 542 AIVTNRTKAVDFTQPYIESGLVVVAPVRKLNSSAWAFLRPFTPLMWAVTGVFFLVVGTVVWILEHRLNDEFRGPPRKQIV 621 (930)
Q Consensus 542 ~~t~~R~~~vdfs~p~~~~~~~~~v~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (930)
..+++|.+.+.|+.||.....++++++..+.
T Consensus 70 ~~~~~r~~~~~~~~p~~~~~~~~~~~~~~~~------------------------------------------------- 100 (228)
T 2pyy_A 70 SITAEREQNFDFSLPIFASGLQIMVRNLESG------------------------------------------------- 100 (228)
T ss_dssp BCCHHHHHHSEECSCSEEEEEEEEEEC-----------------------------------------------------
T ss_pred ccCHHHHccceecccchhcceEEEEECCccc-------------------------------------------------
Confidence 8899999999999999999999999877510
Q ss_pred hhHHHHHHHhhccccCCcccchhHHHHHHHHHHHHHhhhhhhhhhheeeeeccccCCCCChHHhhhCCCeEEEEeCchhH
Q 002371 622 TVLWFSFSTMFFAHRENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIDTLMTSNDRVGYQVGSFAE 701 (930)
Q Consensus 622 ~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~s~~~i~~~~~s~~~ 701 (930)
...+++++||. |++||+..|+...
T Consensus 101 ------------------------------------------------------~~~~~~~~dL~--g~~i~~~~g~~~~ 124 (228)
T 2pyy_A 101 ------------------------------------------------------TGDIRSIDDLP--GKVVATTAGSTAA 124 (228)
T ss_dssp -------------------------------------------------------CCCCSGGGCT--TCEEEEETTSHHH
T ss_pred ------------------------------------------------------cCCcCCHHHcC--CCeEEEEcCcHHH
Confidence 03788999995 8999999999888
Q ss_pred HHHHHhcCCCccceEeCCCHHHHHHHHHcCCcEEEEccchhhHHHHhcCc--ceEEeCCccccCccEEEecCCCcchhHH
Q 002371 702 NYLIEELSIPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSDHC--QFSVRGQEFTKSGWGFAFPRDSPLAIDM 779 (930)
Q Consensus 702 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~~k~spl~~~~ 779 (930)
.++.+ . ..+++.+.+.++++++|.+|++|+++.+...+.+++.+.. ++.+++..+...+++++++|++++.+.+
T Consensus 125 ~~l~~-~---~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 200 (228)
T 2pyy_A 125 TYLRE-H---HISVLEVPKIEEAYKALQTKKADAVVFDAPVLLFYAANEGKGKVEIVGSILREESYGIILPNNSPYRKPI 200 (228)
T ss_dssp HHHHH-T---TCEEEEESSHHHHHHHHHTTSSSEEEEEHHHHHHHHHTTTTTTEEEEEEEEEEEEECCEECTTCTTHHHH
T ss_pred HHHHH-c---CCceEecCCHHHHHHHHHcCCCCEEEecHHHHHHHHHhCCCCcEEEecccccceeEEEEEeCChHHHHHH
Confidence 88854 2 2367788999999999999999999999999988887754 6877776666678899999999999999
Q ss_pred HHHHHhccccccHHHHHHhhcc
Q 002371 780 STAILTLSENGELQRIHDKWLR 801 (930)
Q Consensus 780 n~~i~~l~e~G~~~~~~~~~~~ 801 (930)
|++|.++.++|.++++.++|+.
T Consensus 201 ~~~l~~l~~~g~~~~i~~k~~~ 222 (228)
T 2pyy_A 201 NQALLNLKENGTYQSLYDKWFD 222 (228)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHC
T ss_pred HHHHHHHHhCCcHHHHHHHHcC
Confidence 9999999999999999999987
No 67
>2pvu_A ARTJ; basic amino acid binding protein, ABC transport system, THER bacterium, transport protein; HET: LYS; 1.79A {Geobacillus stearothermophilus} PDB: 2q2a_A* 2q2c_A*
Probab=99.82 E-value=1.6e-19 Score=191.85 Aligned_cols=219 Identities=18% Similarity=0.347 Sum_probs=190.6
Q ss_pred CCcceEEEecCcccccccEEeecCcceEEEEeHHHHHHHHHHCCCcccEEEEeCCCCCCCCCHHHHHHHHHcCcccEEEe
Q 002371 460 NGRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVG 539 (930)
Q Consensus 460 ~g~~lrv~v~~~~~~~p~~~~~~~~~~~~G~~~dll~~l~~~ln~~~~~~~~~~~~~~~n~~~~~l~~~l~~g~~D~~~~ 539 (930)
+.++|+||+.. .|+||.+.+ ++.+.|+++|+++.+++++|++++++.. .|.+++.++.+|++|++++
T Consensus 40 ~~~~l~v~~~~--~~~P~~~~~--~g~~~G~~~dl~~~i~~~~g~~v~~~~~---------~~~~~~~~l~~G~~D~~~~ 106 (272)
T 2pvu_A 40 TKKKVVVGTDA--AFAPFEYMQ--KGKIVGFDVDLLDAVMKAAGLDYELKNI---------GWDPLFASLQSKEVDMGIS 106 (272)
T ss_dssp CCCCEEEEECC--CBTTTBEEE--TTEEESHHHHHHHHHHHHHTCCEEEEEC---------CHHHHHHHHHHTSSSEECS
T ss_pred cCCeEEEEECC--CCCCeEEec--CCeEEEEHHHHHHHHHHHhCCceEEEEC---------CHHHHHHHHhCCCCCEEEe
Confidence 45789999975 789999875 5789999999999999999977655443 4999999999999999988
Q ss_pred cEEEecCccceeeecccccccceEEEEeccCCCcCcceecccCchhHHHHHHHHHHHHHHhhhheeeccCCCCCCCCccc
Q 002371 540 DIAIVTNRTKAVDFTQPYIESGLVVVAPVRKLNSSAWAFLRPFTPLMWAVTGVFFLVVGTVVWILEHRLNDEFRGPPRKQ 619 (930)
Q Consensus 540 ~~~~t~~R~~~vdfs~p~~~~~~~~~v~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 619 (930)
++..+++|.+.+.|+.||.....++++++..
T Consensus 107 ~~~~~~~r~~~~~~s~p~~~~~~~l~~~~~~------------------------------------------------- 137 (272)
T 2pvu_A 107 GITITDERKQSYDFSDPYFEATQVILVKQGS------------------------------------------------- 137 (272)
T ss_dssp SCBCCHHHHTTEEECSCCEEECEEEEEETTC-------------------------------------------------
T ss_pred CCcCCHHHHhcCccchhhhccceEEEEECCC-------------------------------------------------
Confidence 7888999999999999999999999998765
Q ss_pred chhhHHHHHHHhhccccCCcccchhHHHHHHHHHHHHHhhhhhhhhhheeeeeccccCCCCChHHhhhCCCeEEEEeCch
Q 002371 620 IVTVLWFSFSTMFFAHRENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIDTLMTSNDRVGYQVGSF 699 (930)
Q Consensus 620 ~~~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~s~~~i~~~~~s~ 699 (930)
+|++++||. |++||+..|+.
T Consensus 138 ----------------------------------------------------------~i~~~~dL~--g~~i~~~~g~~ 157 (272)
T 2pvu_A 138 ----------------------------------------------------------PVKNALDLK--GKTIGVQNATT 157 (272)
T ss_dssp ----------------------------------------------------------CCCSGGGGT--TSCEEEETTSH
T ss_pred ----------------------------------------------------------CCCCHHHhC--CCeEEEEcCch
Confidence 488999995 88999999999
Q ss_pred hHHHHHHhcCCCccceEeCCCHHHHHHHHHcCCcEEEEccchhhHHHHhcCc--ceEEeCCcc--ccCccEEEecCCCcc
Q 002371 700 AENYLIEELSIPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSDHC--QFSVRGQEF--TKSGWGFAFPRDSPL 775 (930)
Q Consensus 700 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~~--~l~~~~~~~--~~~~~~~~~~k~spl 775 (930)
...++.+..+ ...+++.+++.++++++|.+|++|+++.+...+.+++++.. ++.++.... ...+++++++|+..+
T Consensus 158 ~~~~l~~~~~-~~~~i~~~~~~~~~~~~l~~G~vDa~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~k~~~l 236 (272)
T 2pvu_A 158 GQEAAEKLFG-KGPHIKKFETTVVAIMELLNGGVDAVITDNAVANEYVKNNPNKKLQVIEDPKNFASEYYGMIFPKNSEL 236 (272)
T ss_dssp HHHHHHHHHC-SSTTEEEESSHHHHHHHHHTTSCSEEEEEHHHHHHHHHHCGGGCEEEECCTTTSCCEEECCEEETTCTT
T ss_pred HHHHHHHhcC-CCCeEEEcCCHHHHHHHHHcCCccEEEeCHHHHHHHHHhCCCCceEEeccccccCCceEEEEEeCCHHH
Confidence 8888876554 45677888999999999999999999999999999888765 388887653 556789999999449
Q ss_pred hhHHHHHHHhccccccHHHHHHhhcc
Q 002371 776 AIDMSTAILTLSENGELQRIHDKWLR 801 (930)
Q Consensus 776 ~~~~n~~i~~l~e~G~~~~~~~~~~~ 801 (930)
.+.+|++|.++.++|.++++.++|+.
T Consensus 237 ~~~l~~~l~~l~~~g~~~~i~~k~~~ 262 (272)
T 2pvu_A 237 KAKVDEALKNVINSGKYTEIYKKWFG 262 (272)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHcC
Confidence 99999999999999999999999997
No 68
>4i62_A Amino acid ABC transporter, periplasmic amino ACI protein, putative; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases (NIAI niaid; HET: ARG; 1.05A {Streptococcus pneumoniae}
Probab=99.82 E-value=1.2e-19 Score=192.25 Aligned_cols=220 Identities=21% Similarity=0.366 Sum_probs=191.9
Q ss_pred CcceEEEecCcccccccEE---eecCcceEEEEeHHHHHHHHHHCCCcccEEEEeCCCCCCCCCHHHHHHHHHcCcccEE
Q 002371 461 GRQLRIGVPNRVSYRDFVF---KVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAA 537 (930)
Q Consensus 461 g~~lrv~v~~~~~~~p~~~---~~~~~~~~~G~~~dll~~l~~~ln~~~~~~~~~~~~~~~n~~~~~l~~~l~~g~~D~~ 537 (930)
.++|+|++.. .|+||.+ .+ +++.+.|+++|+++.+++++|++++++. .+|.+++..+.+|++|++
T Consensus 38 ~~~l~v~~~~--~~~P~~~~~~~~-~~g~~~G~~~dl~~~~~~~~g~~~~~~~---------~~~~~~~~~l~~g~~D~~ 105 (269)
T 4i62_A 38 KGKLVVALNP--DFAPFEYQKVVD-GKNQIVGSDIELAKAIATELGVELELSP---------MSFDNVLASVQSGKADLA 105 (269)
T ss_dssp HTEEEEEECS--CBTTTBEEEEET-TEEEEESHHHHHHHHHHHHHTCEEEEEE---------CCHHHHHHHHHTTSCSEE
T ss_pred CCeEEEEecC--CCCCceeecccC-CCCcEeeecHHHHHHHHHHHCCceEEEE---------cCHHHHHHHHhCCCccEE
Confidence 4589999975 7899988 54 4789999999999999999997755544 359999999999999999
Q ss_pred EecEEEecCccceeeecccccccceEEEEeccCCCcCcceecccCchhHHHHHHHHHHHHHHhhhheeeccCCCCCCCCc
Q 002371 538 VGDIAIVTNRTKAVDFTQPYIESGLVVVAPVRKLNSSAWAFLRPFTPLMWAVTGVFFLVVGTVVWILEHRLNDEFRGPPR 617 (930)
Q Consensus 538 ~~~~~~t~~R~~~vdfs~p~~~~~~~~~v~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 617 (930)
++++..+++|.+.+.|+.||.....++++++...
T Consensus 106 ~~~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~~---------------------------------------------- 139 (269)
T 4i62_A 106 ISGVSKTDERSKVFDFSTPYYTAKNKLIVKKSDL---------------------------------------------- 139 (269)
T ss_dssp CSSCBCCHHHHTTEEECSCCEECCEEEEEEGGGT----------------------------------------------
T ss_pred ecCCcCCHhHhhceecccchhhcceEEEEECCcc----------------------------------------------
Confidence 9889999999999999999999999999988751
Q ss_pred ccchhhHHHHHHHhhccccCCcccchhHHHHHHHHHHHHHhhhhhhhhhheeeeeccccCCCCChHHhhhCCCeEEEEeC
Q 002371 618 KQIVTVLWFSFSTMFFAHRENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIDTLMTSNDRVGYQVG 697 (930)
Q Consensus 618 ~~~~~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~s~~~i~~~~~ 697 (930)
.+|++++||. |++||+..|
T Consensus 140 -----------------------------------------------------------~~i~~~~dL~--g~~i~~~~g 158 (269)
T 4i62_A 140 -----------------------------------------------------------ATYQSVNDLA--QKKVGAQKG 158 (269)
T ss_dssp -----------------------------------------------------------TTCSSGGGGC---CEEEEETT
T ss_pred -----------------------------------------------------------ccccCHHHhC--CCeEEEecC
Confidence 4789999995 899999999
Q ss_pred chhHHHHHHhcCCCccceEeCCCHHHHHHHHHcCCcEEEEccchhhHHHHhcCcceEEeCCccc---cCccEEEecCCCc
Q 002371 698 SFAENYLIEELSIPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSDHCQFSVRGQEFT---KSGWGFAFPRDSP 774 (930)
Q Consensus 698 s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~k~sp 774 (930)
+....++.+.. +..+++.+++.++++++|.+|++|+++.+.+.+.+++.++..+.+....+. ..+++++++|++|
T Consensus 159 ~~~~~~l~~~~--~~~~~~~~~~~~~~~~~l~~g~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (269)
T 4i62_A 159 SIQETMAKDLL--QNSSLVSLPKNGNLITDLKSGQVDAVIFEEPVAKGFVENNPDLAIADLNFEKEQDDSYAVAMKKDSK 236 (269)
T ss_dssp SHHHHHHHHHC--TTSEEEEESCHHHHHHHHHTTSSSEEEEEHHHHHHHHHHCTTEEECSCCCCC-CCCEECCEEESSCH
T ss_pred chHHHHHHHhC--CCCcEEecCCHHHHHHHHHcCCCCEEEeChHHHHHHHHhCCCCeEEeeccCCCcccceEEEEeCCCH
Confidence 99888886544 346788899999999999999999999999999999888777777655443 5678999999998
Q ss_pred -chhHHHHHHHhccccccHHHHHHhhcc
Q 002371 775 -LAIDMSTAILTLSENGELQRIHDKWLR 801 (930)
Q Consensus 775 -l~~~~n~~i~~l~e~G~~~~~~~~~~~ 801 (930)
+.+.||++|.++.++|.++++.++|+.
T Consensus 237 ~l~~~l~~~l~~l~~~g~~~~i~~k~~~ 264 (269)
T 4i62_A 237 ELKEAVDKTIQKLKESGELDKLIEDAFK 264 (269)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCChHHHHHHHHhC
Confidence 999999999999999999999999997
No 69
>1xt8_A Putative amino-acid transporter periplasmic solut protein; ABC transport, cysteine uptake; 2.00A {Campylobacter jejuni} SCOP: c.94.1.1
Probab=99.81 E-value=1.9e-19 Score=193.55 Aligned_cols=218 Identities=18% Similarity=0.292 Sum_probs=191.3
Q ss_pred CcceEEEecCcccccccEEeecCcceEEEEeHHHHHHHHHHC---CCcccEEEEeCCCCCCCCCHHHHHHHHHcCcccEE
Q 002371 461 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLL---PYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAA 537 (930)
Q Consensus 461 g~~lrv~v~~~~~~~p~~~~~~~~~~~~G~~~dll~~l~~~l---n~~~~~~~~~~~~~~~n~~~~~l~~~l~~g~~D~~ 537 (930)
.++|+||+.. +|+||.+.+. ++.+.|+++|+++.+++++ |++++++.. +|.+++..+.+|++|++
T Consensus 43 ~~~l~v~~~~--~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~~~~g~~~~~~~~---------~~~~~~~~l~~G~~D~~ 110 (292)
T 1xt8_A 43 NGVVRIGVFG--DKPPFGYVDE-KGNNQGYDIALAKRIAKELFGDENKVQFVLV---------EAANRVEFLKSNKVDII 110 (292)
T ss_dssp HSSEEEEECS--EETTTEEECT-TSCEESHHHHHHHHHHHHHHSCTTCEEEEEC---------CGGGHHHHHHTTSCSEE
T ss_pred CCeEEEEECC--CCCCeeEECC-CCCEeeEhHHHHHHHHHHhccCCceEEEEEc---------CHHHHHHHHhCCCeeEE
Confidence 4679999975 7999999874 6889999999999999999 977655543 48999999999999999
Q ss_pred EecEEEecCccceeeecccccccceEEEEeccCCCcCcceecccCchhHHHHHHHHHHHHHHhhhheeeccCCCCCCCCc
Q 002371 538 VGDIAIVTNRTKAVDFTQPYIESGLVVVAPVRKLNSSAWAFLRPFTPLMWAVTGVFFLVVGTVVWILEHRLNDEFRGPPR 617 (930)
Q Consensus 538 ~~~~~~t~~R~~~vdfs~p~~~~~~~~~v~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 617 (930)
++++..+++|.+.++|+.||...+.++++++..
T Consensus 111 ~~~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~----------------------------------------------- 143 (292)
T 1xt8_A 111 LANFTQTPQRAEQVDFCSPYMKVALGVAVPKDS----------------------------------------------- 143 (292)
T ss_dssp CSSCBCCHHHHTTEEECCCCEEEEEEEEEETTC-----------------------------------------------
T ss_pred eecCCCCcchhcceeeeccceecceEEEEECCC-----------------------------------------------
Confidence 887888999999999999999999999988654
Q ss_pred ccchhhHHHHHHHhhccccCCcccchhHHHHHHHHHHHHHhhhhhhhhhheeeeeccccCCCCChHHhhhCCCeEEEEeC
Q 002371 618 KQIVTVLWFSFSTMFFAHRENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIDTLMTSNDRVGYQVG 697 (930)
Q Consensus 618 ~~~~~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~s~~~i~~~~~ 697 (930)
++++++||. |++||+..|
T Consensus 144 ------------------------------------------------------------~i~~~~dL~--g~~i~~~~g 161 (292)
T 1xt8_A 144 ------------------------------------------------------------NITSVEDLK--DKTLLLNKG 161 (292)
T ss_dssp ------------------------------------------------------------CCCSSGGGT--TSEEEEETT
T ss_pred ------------------------------------------------------------CCCCHHHhC--CCEEEEeCC
Confidence 678899996 899999999
Q ss_pred chhHHHHHHhcCCCccceEeCCCHHHHHHHHHcCCcEEEEccchhhHHHHhcCcceEEeCCccccCcc-EEEecCCCc-c
Q 002371 698 SFAENYLIEELSIPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSDHCQFSVRGQEFTKSGW-GFAFPRDSP-L 775 (930)
Q Consensus 698 s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~k~sp-l 775 (930)
+....++.+.. +..+++.+++.++++++|.+|++|+++.+...+.+++++..++.++...+...++ +++++|++| +
T Consensus 162 ~~~~~~l~~~~--~~~~~~~~~~~~~~~~~L~~G~vDa~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~~~~l 239 (292)
T 1xt8_A 162 TTADAYFTQNY--PNIKTLKYDQNTETFAALMDKRGDALSHDNTLLFAWVKDHPDFKMGIKELGNKDVIAPAVKKGDKEL 239 (292)
T ss_dssp SHHHHHHHHHC--TTSEEEEESSHHHHHHHHHTTSSSEEEEEHHHHHHHHHHCTTEEEEEEEEEEEEEECCEEETTCHHH
T ss_pred CcHHHHHHHhC--CCceEEEcCCHHHHHHHHHcCCccEEEecHHHHHHHHHhCCCeEEcccccccCceeEEEEeCCCHHH
Confidence 98888886543 3456788899999999999999999999999999998887778887766666677 999999998 9
Q ss_pred hhHHHHHHHhccccccHHHHHHhhcc
Q 002371 776 AIDMSTAILTLSENGELQRIHDKWLR 801 (930)
Q Consensus 776 ~~~~n~~i~~l~e~G~~~~~~~~~~~ 801 (930)
.+.+|++|.++.++|.++++.++|+.
T Consensus 240 ~~~l~~~l~~l~~~g~~~~i~~k~~~ 265 (292)
T 1xt8_A 240 KEFIDNLIIKLGQEQFFHKAYDETLK 265 (292)
T ss_dssp HHHHHHHHHHHHTTTHHHHHHHHHTG
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHhcC
Confidence 99999999999999999999999998
No 70
>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-binding protein; 2.26A {Neisseria gonorrhoeae}
Probab=99.81 E-value=2.3e-19 Score=192.63 Aligned_cols=218 Identities=20% Similarity=0.320 Sum_probs=191.8
Q ss_pred CcceEEEecCcccccccEEeecCcceEEEEeHHHHHHHHHHC---CCcccEEEEeCCCCCCCCCHHHHHHHHHcCcccEE
Q 002371 461 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLL---PYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAA 537 (930)
Q Consensus 461 g~~lrv~v~~~~~~~p~~~~~~~~~~~~G~~~dll~~l~~~l---n~~~~~~~~~~~~~~~n~~~~~l~~~l~~g~~D~~ 537 (930)
.++||||+.. +|+||.+.+. ++.+.|+++|+++.+++++ |++++++.. .|.+++..|.+|++|++
T Consensus 54 ~~~l~vg~~~--~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~~~~g~~v~~~~~---------~~~~~~~~l~~G~~D~~ 121 (291)
T 2yjp_A 54 KGVIRIGVFG--DKPPFGYVDA-NGKNQGFDVEIAKDLAKDLLGSPDKVEFVLT---------EAANRVEYVRSGKVDLI 121 (291)
T ss_dssp HTCEEEEECS--EETTTEEECT-TSCEESHHHHHHHHHHHHHHSCGGGEEEEEC---------CGGGHHHHHHTTSCSEE
T ss_pred CCeEEEEEcC--CCCCceEECC-CCCEeehHHHHHHHHHHHhccCCceEEEEEc---------cHHHHHHHHhCCCeeEE
Confidence 3579999975 7999998874 7899999999999999999 977555443 38999999999999999
Q ss_pred EecEEEecCccceeeecccccccceEEEEeccCCCcCcceecccCchhHHHHHHHHHHHHHHhhhheeeccCCCCCCCCc
Q 002371 538 VGDIAIVTNRTKAVDFTQPYIESGLVVVAPVRKLNSSAWAFLRPFTPLMWAVTGVFFLVVGTVVWILEHRLNDEFRGPPR 617 (930)
Q Consensus 538 ~~~~~~t~~R~~~vdfs~p~~~~~~~~~v~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 617 (930)
++++..+.+|.+.++|+.||...+.++++++..
T Consensus 122 ~~~~~~~~~r~~~~~~~~p~~~~~~~l~~~~~~----------------------------------------------- 154 (291)
T 2yjp_A 122 LANFTQTPERAEAVDFADPYMKVALGVVSPKNK----------------------------------------------- 154 (291)
T ss_dssp CSSCBCCHHHHTTEEECCCCEEECEEEEEETTS-----------------------------------------------
T ss_pred EeCCCCChHHHccceeccCeeecceEEEEeCCC-----------------------------------------------
Confidence 988888999999999999999999999988654
Q ss_pred ccchhhHHHHHHHhhccccCCcccchhHHHHHHHHHHHHHhhhhhhhhhheeeeeccccCCCCChHHhhhCCCeEEEEeC
Q 002371 618 KQIVTVLWFSFSTMFFAHRENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIDTLMTSNDRVGYQVG 697 (930)
Q Consensus 618 ~~~~~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~s~~~i~~~~~ 697 (930)
+|++++||. |++||+..|
T Consensus 155 ------------------------------------------------------------~i~sl~dL~--gk~v~~~~g 172 (291)
T 2yjp_A 155 ------------------------------------------------------------PITDMAQLK--DQTLLVNKG 172 (291)
T ss_dssp ------------------------------------------------------------CCCSGGGGT--TSEEEEETT
T ss_pred ------------------------------------------------------------CCCCHHHhC--CCEEEEecC
Confidence 688999996 899999999
Q ss_pred chhHHHHHHhcCCCccceEeCCCHHHHHHHHHcCCcEEEEccchhhHHHHhcCcceEEeCCccccCcc-EEEecCCCc-c
Q 002371 698 SFAENYLIEELSIPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSDHCQFSVRGQEFTKSGW-GFAFPRDSP-L 775 (930)
Q Consensus 698 s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~k~sp-l 775 (930)
+....++.+.. +..+++.+++.++++++|.+|++|+++.+.+.+.+++.+..++.++...+...++ +++++|++| +
T Consensus 173 ~~~~~~l~~~~--~~~~~~~~~~~~~~~~~l~~G~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l 250 (291)
T 2yjp_A 173 TTADAFFTKSH--PEVKLLKFDQNTETFDALKDGRGVALAHDNALLWAWAKENPNFEVAIGNLGPAEFIAPAVQKGNADL 250 (291)
T ss_dssp SHHHHHHHHHC--TTSEEEEESSHHHHHHHHHTTSSSEEEEEHHHHHHHHHHCTTEEEEECCSSSCEEECCEEETTCHHH
T ss_pred CcHHHHHHHhC--CCceEEEeCCHHHHHHHHHcCCccEEEecHHHHHHHHHhCCCeEEcCCcccCCcceEEEEeCCCHHH
Confidence 98888886544 3457788899999999999999999999999999988887778888777777777 999999998 9
Q ss_pred hhHHHHHHHhccccccHHHHHHhhcc
Q 002371 776 AIDMSTAILTLSENGELQRIHDKWLR 801 (930)
Q Consensus 776 ~~~~n~~i~~l~e~G~~~~~~~~~~~ 801 (930)
.+.||++|.++.++|.++++.++|+.
T Consensus 251 ~~~l~~al~~l~~~g~~~~i~~k~~~ 276 (291)
T 2yjp_A 251 LNWVNGEIAAMKKDGRLKAAYEKTLL 276 (291)
T ss_dssp HHHHHHHHHHHHHHSHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHhcc
Confidence 99999999999999999999999987
No 71
>2vha_A Periplasmic binding transport protein; periplasmic binding protein, ligand binding, ultrahigh resolution; HET: GLU; 1.00A {Shigella flexneri} PDB: 2ia4_A*
Probab=99.80 E-value=2.9e-19 Score=191.58 Aligned_cols=221 Identities=21% Similarity=0.281 Sum_probs=189.7
Q ss_pred CcceEEEecCcccccccEEeecCcceEEEEeHHHHHHHHHH----CC---CcccEEEEeCCCCCCCCCHHHHHHHHHcCc
Q 002371 461 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRL----LP---YAVPYKFIPYGDGHKNPTYSELINQITTGV 533 (930)
Q Consensus 461 g~~lrv~v~~~~~~~p~~~~~~~~~~~~G~~~dll~~l~~~----ln---~~~~~~~~~~~~~~~n~~~~~l~~~l~~g~ 533 (930)
.++|+||+.. .|+||.+.+. ++.+.|+++|+++.+++. +| ++ +++.+ .+|.+++..+.+|+
T Consensus 16 ~~~l~v~~~~--~~~P~~~~~~-~g~~~G~~~dl~~~ia~~l~~~~G~~~~~--v~~~~-------~~~~~~~~~l~~g~ 83 (287)
T 2vha_A 16 NGVIVVGHRE--SSVPFSYYDN-QQKVVGYSQDYSNAIVEAVKKKLNKPDLQ--VKLIP-------ITSQNRIPLLQNGT 83 (287)
T ss_dssp HTEEEEEECS--EETTTEEECS-SSCEESHHHHHHHHHHHHHHHHTTCTTCE--EEEEE-------CCTTTHHHHHHTTS
T ss_pred CCeEEEEEcC--CCCCceEECC-CCCcccccHHHHHHHHHHHHHhcCCCCce--EEEEE-------CCHHHHHHHHHCCC
Confidence 4689999975 7999999875 688999999999999976 56 55 44444 34889999999999
Q ss_pred ccEEEecEEEecCccceeeecccccccceEEEEeccCCCcCcceecccCchhHHHHHHHHHHHHHHhhhheeeccCCCCC
Q 002371 534 FDAAVGDIAIVTNRTKAVDFTQPYIESGLVVVAPVRKLNSSAWAFLRPFTPLMWAVTGVFFLVVGTVVWILEHRLNDEFR 613 (930)
Q Consensus 534 ~D~~~~~~~~t~~R~~~vdfs~p~~~~~~~~~v~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~~~~~~~~~~~~~~~ 613 (930)
+|++++++..+++|.+.++||.||...+.++++++..
T Consensus 84 ~D~~~~~~~~t~~r~~~~~~s~p~~~~~~~l~~~~~~------------------------------------------- 120 (287)
T 2vha_A 84 FDFECGSTTNNVERQKQAAFSDTIFVVGTRLLTKKGG------------------------------------------- 120 (287)
T ss_dssp CSEECSSCBCCHHHHTTCEEEEEEEEEEEEEEEETTS-------------------------------------------
T ss_pred eeEEeccccCCcchhhcccccceeeecceEEEEECCC-------------------------------------------
Confidence 9999888889999999999999999999999998655
Q ss_pred CCCcccchhhHHHHHHHhhccccCCcccchhHHHHHHHHHHHHHhhhhhhhhhheeeeeccccCCCCChHHhhhCCCeEE
Q 002371 614 GPPRKQIVTVLWFSFSTMFFAHRENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIDTLMTSNDRVG 693 (930)
Q Consensus 614 ~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~s~~~i~ 693 (930)
+|++++||. |++||
T Consensus 121 ----------------------------------------------------------------~i~sl~dL~--g~~v~ 134 (287)
T 2vha_A 121 ----------------------------------------------------------------DIKDFADLK--GKAVV 134 (287)
T ss_dssp ----------------------------------------------------------------SCCSGGGGT--TCEEE
T ss_pred ----------------------------------------------------------------CCCCHHHcC--CCEEE
Confidence 578999996 88999
Q ss_pred EEeCchhHHHHHHhcC--CCccceEeCCCHHHHHHHHHcCCcEEEEccchhhHHHHhcC---cceEEeCCccccCccEEE
Q 002371 694 YQVGSFAENYLIEELS--IPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSDH---CQFSVRGQEFTKSGWGFA 768 (930)
Q Consensus 694 ~~~~s~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~~~~ 768 (930)
+..|+....++.+... ....+++.+.+.++++++|.+|++|+++.+...+.+++++. ..+.+++..+...+++++
T Consensus 135 ~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~G~vDa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (287)
T 2vha_A 135 VTSGTTSEVLLNKLNEEQKMNMRIISAKDHGDSFRTLESGRAVAFMMDDALLAGERAKAKKPDNWDIVGKPQSQEAYGCM 214 (287)
T ss_dssp EETTSHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHTTSCSEEEEEHHHHHHHHTTSSSGGGEEEESCCSCEEEEEEE
T ss_pred EeCCCcHHHHHHHHhhccCCCceEEEcCCHHHHHHHHHcCCeeEEEeChHHHHHHHHhCCCCCceEecCCccccCceEEE
Confidence 9999988887754321 12356788899999999999999999999999998888763 368888877777789999
Q ss_pred ecCCCc-chhHHHHHHHhccccccHHHHHHhhccc
Q 002371 769 FPRDSP-LAIDMSTAILTLSENGELQRIHDKWLRK 802 (930)
Q Consensus 769 ~~k~sp-l~~~~n~~i~~l~e~G~~~~~~~~~~~~ 802 (930)
++|++| +...||++|.++.++|.++++.++|+..
T Consensus 215 ~~k~~~~l~~~l~~~l~~l~~~g~~~~i~~k~~~~ 249 (287)
T 2vha_A 215 LRKDDPQFKKLMDDTIAQVQTSGEAEKWFDKWFKN 249 (287)
T ss_dssp ECTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHS
T ss_pred EeCCCHHHHHHHHHHHHHHHhCchHHHHHHHHcCC
Confidence 999988 9999999999999999999999999983
No 72
>2yln_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-BIND protein; HET: CYS GOL; 1.12A {Neisseria gonorrhoeae} PDB: 3zsf_A
Probab=99.80 E-value=3e-19 Score=190.86 Aligned_cols=216 Identities=19% Similarity=0.304 Sum_probs=189.2
Q ss_pred CcceEEEecCcccccccEEeecCcceEEEEeHHHHHHHHHHCCCcccEEEEeCCCCCCCCCHHHHHHHHHcCcccEEEec
Q 002371 461 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGD 540 (930)
Q Consensus 461 g~~lrv~v~~~~~~~p~~~~~~~~~~~~G~~~dll~~l~~~ln~~~~~~~~~~~~~~~n~~~~~l~~~l~~g~~D~~~~~ 540 (930)
.++|+||+.. +|+||.+.+. ++.+.|+.+|+++.+++++|++++++.. +|.+++..|.+|++|+++++
T Consensus 56 ~~~l~v~~~~--~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~G~~v~~~~~---------~~~~~~~~l~~G~~D~~~~~ 123 (283)
T 2yln_A 56 KGTVTVGTEG--TYAPFTYHDK-DGKLTGYDVEVTRAVAEKLGVKVEFKET---------QWDSMMAGLKAGRFDVVANQ 123 (283)
T ss_dssp TCEEEEEECS--EETTTEEECT-TSCEESHHHHHHHHHHHHHTCEEEEEEC---------CGGGHHHHHHHTSCSEECSS
T ss_pred CCeEEEEECC--CCCCeeEECC-CCCEeeehHHHHHHHHHHcCCceEEEEC---------CHHHHHHHHHCCCcCEEEec
Confidence 4689999975 6999999874 6789999999999999999977555443 39999999999999999987
Q ss_pred EEE-ecCccceeeecccccccceEEEEeccCCCcCcceecccCchhHHHHHHHHHHHHHHhhhheeeccCCCCCCCCccc
Q 002371 541 IAI-VTNRTKAVDFTQPYIESGLVVVAPVRKLNSSAWAFLRPFTPLMWAVTGVFFLVVGTVVWILEHRLNDEFRGPPRKQ 619 (930)
Q Consensus 541 ~~~-t~~R~~~vdfs~p~~~~~~~~~v~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 619 (930)
+.. +.+|.+.++|+.||...+..+++++..
T Consensus 124 ~~~~t~~r~~~~~~~~p~~~~~~~l~~~~~~------------------------------------------------- 154 (283)
T 2yln_A 124 VGLTSPERQATFDKSEPYSWSGAVLVAHNDS------------------------------------------------- 154 (283)
T ss_dssp CCCCSHHHHHHEEECSCSEEECEEEEEETTC-------------------------------------------------
T ss_pred CccCChhhhcceEeccCeeeecEEEEEECCC-------------------------------------------------
Confidence 887 899999999999999999999998765
Q ss_pred chhhHHHHHHHhhccccCCcccchhHHHHHHHHHHHHHhhhhhhhhhheeeeeccccCCCCChHHhhhCCCeEEEEeCch
Q 002371 620 IVTVLWFSFSTMFFAHRENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIDTLMTSNDRVGYQVGSF 699 (930)
Q Consensus 620 ~~~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~s~~~i~~~~~s~ 699 (930)
+|++++||. |++||+..|+.
T Consensus 155 ----------------------------------------------------------~i~s~~dL~--G~~v~v~~g~~ 174 (283)
T 2yln_A 155 ----------------------------------------------------------NIKSIADIK--GVKTAQSLTSN 174 (283)
T ss_dssp ----------------------------------------------------------SCCSGGGCT--TSEEEECTTSH
T ss_pred ----------------------------------------------------------CCCCHHHhC--CCEEEEecCch
Confidence 488999994 89999999998
Q ss_pred hHHHHHHhcCCCccceEeCCCHHHHHHHHHcCCcEEEEccchhhHHHHhcCc--ceEEeC-Cccc-cCccEEEecCCCc-
Q 002371 700 AENYLIEELSIPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSDHC--QFSVRG-QEFT-KSGWGFAFPRDSP- 774 (930)
Q Consensus 700 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~~--~l~~~~-~~~~-~~~~~~~~~k~sp- 774 (930)
...++.+ . ..+++.+.+.++++++|.+|++|+++.+...+.+++.+.. ++.++. ..+. ...++++++|++|
T Consensus 175 ~~~~l~~-~---~~~~~~~~~~~~~~~~l~~g~vDa~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~k~~~~ 250 (283)
T 2yln_A 175 YGEKAKA-A---GAQLVPVDGLAQSLTLIEQKRADATLNDELAVLDYLKKNPNAGVKIVWSAPADEKVGSGLIVNKGNDE 250 (283)
T ss_dssp HHHHHHH-T---TCEEEECSSHHHHHHHHHTTSCCEEEEEHHHHHHHHHHSTTSSEEEEEECCGGGCEEECCEEESSCHH
T ss_pred HHHHHHH-c---CCeEEEeCCHHHHHHHHHcCCCCEEEecHHHHHHHHHhCCCCcEEEccCcccCCcccEEEEEeCCCHH
Confidence 8888854 3 3467788899999999999999999999999998877754 488887 6766 6788999999988
Q ss_pred chhHHHHHHHhccccccHHHHHHhhcc
Q 002371 775 LAIDMSTAILTLSENGELQRIHDKWLR 801 (930)
Q Consensus 775 l~~~~n~~i~~l~e~G~~~~~~~~~~~ 801 (930)
+.+.||++|.++.++|.++++.++|+.
T Consensus 251 l~~~i~~al~~l~~~g~~~~i~~k~~~ 277 (283)
T 2yln_A 251 AVAKFSTAINELKADGTLKKLGEQFFG 277 (283)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHCCcHHHHHHHHcC
Confidence 999999999999999999999999997
No 73
>2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate, transport, ABC transport, virulence factor, receptor; 1.49A {Campylobacter jejuni}
Probab=99.72 E-value=1.5e-17 Score=175.01 Aligned_cols=215 Identities=16% Similarity=0.283 Sum_probs=181.1
Q ss_pred CcceEEEecCcccccccEEeecCcceEEEEeHHHHHHHHHHC---CCcccEEEEeCCCCCCCCCHHHHHHHHHcCcccEE
Q 002371 461 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLL---PYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAA 537 (930)
Q Consensus 461 g~~lrv~v~~~~~~~p~~~~~~~~~~~~G~~~dll~~l~~~l---n~~~~~~~~~~~~~~~n~~~~~l~~~l~~g~~D~~ 537 (930)
.++|+||+.. +++||.+.+..++.+.|+++|+++.+++++ |++++++. .+|.+++..+.+|++|++
T Consensus 37 ~~~l~vg~~~--~~~p~~~~~~~~g~~~G~~~~l~~~~~~~~~~pg~~v~~~~---------~~~~~~~~~l~~g~~D~~ 105 (259)
T 2v25_A 37 KGQLIVGVKN--DVPHYALLDQATGEIKGFEVDVAKLLAKSILGDDKKIKLVA---------VNAKTRGPLLDNGSVDAV 105 (259)
T ss_dssp HTCEEEEECS--EETTTEEEETTTTEEESHHHHHHHHHHHHHHSCTTSEEEEE---------CCTTTHHHHHHTTSCSEE
T ss_pred CCeEEEEECC--CCCCeEEEECCCCeEEEeeHHHHHHHHHHhcCCCcceEEEE---------cCHHHHHHHHhCCCCCEE
Confidence 4679999975 789999987446899999999999999999 97755544 348899999999999999
Q ss_pred EecEEEecCccceeeecccccccceEEEEeccCCCcCcceecccCchhHHHHHHHHHHHHHHhhhheeeccCCCCCCCCc
Q 002371 538 VGDIAIVTNRTKAVDFTQPYIESGLVVVAPVRKLNSSAWAFLRPFTPLMWAVTGVFFLVVGTVVWILEHRLNDEFRGPPR 617 (930)
Q Consensus 538 ~~~~~~t~~R~~~vdfs~p~~~~~~~~~v~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 617 (930)
++++..+++|.+.++|+.||.....++++++..
T Consensus 106 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~----------------------------------------------- 138 (259)
T 2v25_A 106 IATFTITPERKRIYNFSEPYYQDAIGLLVLKEK----------------------------------------------- 138 (259)
T ss_dssp CSSCBCCHHHHTTEEECSCSEEEEEEEEEEGGG-----------------------------------------------
T ss_pred EecCccCHHHHhcCcccccceeCceEEEEeCCC-----------------------------------------------
Confidence 887888889999999999999999999998654
Q ss_pred ccchhhHHHHHHHhhccccCCcccchhHHHHHHHHHHHHHhhhhhhhhhheeeeeccccCCCCChHHhhhCCCeEEEEeC
Q 002371 618 KQIVTVLWFSFSTMFFAHRENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIDTLMTSNDRVGYQVG 697 (930)
Q Consensus 618 ~~~~~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~s~~~i~~~~~ 697 (930)
++++++||. |++|++..|
T Consensus 139 ------------------------------------------------------------~i~~~~dL~--g~~i~~~~g 156 (259)
T 2v25_A 139 ------------------------------------------------------------KYKSLADMK--GANIGVAQA 156 (259)
T ss_dssp ------------------------------------------------------------CCCSGGGCT--TCEEEEETT
T ss_pred ------------------------------------------------------------CCCCHHHhC--CCEEEEecC
Confidence 577899996 889999998
Q ss_pred chhHHHHHHhc---CCCccceEeCCCHHHHHHHHHcCCcEEEEccchhhHHHHhcCcceEEeCCccccCccEEEecCCCc
Q 002371 698 SFAENYLIEEL---SIPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSDHCQFSVRGQEFTKSGWGFAFPRDSP 774 (930)
Q Consensus 698 s~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~k~sp 774 (930)
+....++.+.. +.. .+++.+++.++.+++|.+|++|+++.+...+.+++++..+ +++..+...+++++++|++|
T Consensus 157 ~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~l~~g~vDa~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~k~~~ 233 (259)
T 2v25_A 157 ATTKKAIGEAAKKIGID-VKFSEFPDYPSIKAALDAKRVDAFSVDKSILLGYVDDKSE--ILPDSFEPQSYGIVTKKDDP 233 (259)
T ss_dssp CSHHHHHHHHHHHTTCC-CEEEEESSHHHHHHHHHTTSSSEEEEEHHHHTTTCCTTEE--ECSCCCSEEEECCEEETTCH
T ss_pred CchHHHHHHHHHhcCCc-eeEEEeCCHHHHHHHHHcCCCcEEEecHHHHHHHHHhCCC--ccccccccceeEEEEcCCCH
Confidence 87777664422 321 2567889999999999999999999999888888777655 55666666678999999997
Q ss_pred -chhHHHHHHHhccccccHHHHHHhhc
Q 002371 775 -LAIDMSTAILTLSENGELQRIHDKWL 800 (930)
Q Consensus 775 -l~~~~n~~i~~l~e~G~~~~~~~~~~ 800 (930)
+.+.+|++|.++.++ ++++.++|.
T Consensus 234 ~l~~~~~~~l~~~~~~--~~~i~~k~~ 258 (259)
T 2v25_A 234 AFAKYVDDFVKEHKNE--IDALAKKWG 258 (259)
T ss_dssp HHHHHHHHHHHHTHHH--HHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHhC
Confidence 999999999999999 999999984
No 74
>3n5l_A Binding protein component of ABC phosphonate TRAN; structural genomics, joint center for structural genomics; HET: UNL; 1.97A {Pseudomonas aeruginosa}
Probab=98.81 E-value=1.3e-08 Score=109.07 Aligned_cols=215 Identities=14% Similarity=0.114 Sum_probs=145.7
Q ss_pred CcceEEEecCcccccccEEeecCcceEEEEeHHHHHHHHHHCCCcccEEEEeCCCCCCCCCHHHHHHHHHcCcccEEEec
Q 002371 461 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGD 540 (930)
Q Consensus 461 g~~lrv~v~~~~~~~p~~~~~~~~~~~~G~~~dll~~l~~~ln~~~~~~~~~~~~~~~n~~~~~l~~~l~~g~~D~~~~~ 540 (930)
.++|+||+.. .++|+..... ..++++.+++++|.++++. .. .+|++++..|..|++|+++.+
T Consensus 3 ~~~l~iG~~p--~~~p~~~~~~--------~~~l~~~l~k~lG~~ve~~--~~------~~~~~~i~al~~G~vDi~~~~ 64 (310)
T 3n5l_A 3 QPVINFGIIS--TESSQNLKSI--------WEPFLKDMSQQTGYQVKAF--FA------PDYAGIIQGMRFDKVDIAWYG 64 (310)
T ss_dssp CCEEEEEECC--SSCHHHHHHH--------HHHHHHHHHHHHSSEEEEE--CC------SSHHHHHHHHHTTSCSEEECC
T ss_pred CcEEEEEEec--CCCHHHHHHH--------HHHHHHHHHHHhCCCEEEE--eC------CCHHHHHHHHHcCCCCEEEEC
Confidence 3689999986 5666655432 2489999999999765544 32 569999999999999999744
Q ss_pred -EEEec--Cccceeeecccccc-----cceEEEEeccCCCcCcceecccCchhHHHHHHHHHHHHHHhhhheeeccCCCC
Q 002371 541 -IAIVT--NRTKAVDFTQPYIE-----SGLVVVAPVRKLNSSAWAFLRPFTPLMWAVTGVFFLVVGTVVWILEHRLNDEF 612 (930)
Q Consensus 541 -~~~t~--~R~~~vdfs~p~~~-----~~~~~~v~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~~~~~~~~~~~~~~ 612 (930)
..... +|.....|..++.. ...+++|++.
T Consensus 65 ~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~~lvv~~d------------------------------------------- 101 (310)
T 3n5l_A 65 NKAAMEAVDRAHGEIFAQTVAASGAPGYWSLLIANKD------------------------------------------- 101 (310)
T ss_dssp HHHHHHHHHHSCEEEEEEEEETTCCSEEEEEEEEETT-------------------------------------------
T ss_pred cHHHHHHHHhcCCeEEEEEeccCCCcceEEEEEEECC-------------------------------------------
Confidence 33322 23333344433210 1234555543
Q ss_pred CCCCcccchhhHHHHHHHhhccccCCcccchhHHHHHHHHHHHHHhhhhhhhhhheeeeeccccCCCCChHHhhh--CCC
Q 002371 613 RGPPRKQIVTVLWFSFSTMFFAHRENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIDTLMT--SND 690 (930)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~--s~~ 690 (930)
.+|++++||++ .|+
T Consensus 102 ----------------------------------------------------------------s~i~sl~DL~~~~kgk 117 (310)
T 3n5l_A 102 ----------------------------------------------------------------SKIDSLEDMLANAKSL 117 (310)
T ss_dssp ----------------------------------------------------------------CSCCSHHHHHHTGGGC
T ss_pred ----------------------------------------------------------------CCCCCHHHHhhhcCCC
Confidence 47999999943 367
Q ss_pred eEEEE-eCchh----HHH-HHHhcCCCc---cceEeCCCHHHHHHHHHcCCcEEEEccchhhHHHHhcC----cceEEeC
Q 002371 691 RVGYQ-VGSFA----ENY-LIEELSIPK---SRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSDH----CQFSVRG 757 (930)
Q Consensus 691 ~i~~~-~~s~~----~~~-l~~~~~~~~---~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~----~~l~~~~ 757 (930)
+|++. .++.. ..+ +.+..+... ...+...+.++.+.+|.+|++|+.+.+...+..+.++. .+++++.
T Consensus 118 ~ia~~~~gs~~~~l~~~~~l~~~~Gi~~~~~~~~v~~g~~~~~~~al~~G~vDa~~~~~~~~~~~~~~~~~~~~~lrvl~ 197 (310)
T 3n5l_A 118 TFGNGDPNSTSGYLVPGYYVFAKNNVDPVKAFKRTLNSSHEVNALAVANKQVDVATFNTEGMERLELTQPEKARQLKVIW 197 (310)
T ss_dssp EEEECCTTCTTTTHHHHHHTTTTTTCCHHHHSSEEEECCHHHHHHHHHTTSSSEEEEEHHHHHHHHHHCHHHHTTEEEEE
T ss_pred EEEecCCCccHhHHHHHHHHHHHcCCChHHhccccccCCHHHHHHHHHcCCccEEEecchhHHHHHHhCccchhCEEEEE
Confidence 88864 33322 121 212333332 12344567788999999999999999988888887764 3577765
Q ss_pred CccccCccEEEecCCCc--chhHHHHHHHhccccccHHHHHHhhc
Q 002371 758 QEFTKSGWGFAFPRDSP--LAIDMSTAILTLSENGELQRIHDKWL 800 (930)
Q Consensus 758 ~~~~~~~~~~~~~k~sp--l~~~~n~~i~~l~e~G~~~~~~~~~~ 800 (930)
.......++++++|+.| +++.++.+|.++.++|..+++.+++-
T Consensus 198 ~s~~~p~~~i~~~~~~~~~l~~~l~~al~~~~~d~~~~~~l~~~g 242 (310)
T 3n5l_A 198 KSPLIPGDPLVWRNNLSDEQKNKLRDFFFKYGANAEQKKVLADLQ 242 (310)
T ss_dssp EEEEEECCEEEEETTSCHHHHHHHHHHHHHCCCSHHHHHHHHHTT
T ss_pred ECCCCCCCcEEEECCCCHHHHHHHHHHHHhcCCChhHHHHHHhcC
Confidence 44334457899999954 99999999999999999988888763
No 75
>3p7i_A PHND, subunit of alkylphosphonate ABC transporter; phosphonate binding protein, transport protein; 1.71A {Escherichia coli UTI89} PDB: 3qk6_A 3quj_A* 3s4u_A
Probab=98.72 E-value=7.1e-08 Score=103.65 Aligned_cols=216 Identities=15% Similarity=0.186 Sum_probs=143.5
Q ss_pred CCcceEEEecCcccccccEEeecCcceEEEEeHHHHHHHHHHCCCcccEEEEeCCCCCCCCCHHHHHHHHHcCcccEEEe
Q 002371 460 NGRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVG 539 (930)
Q Consensus 460 ~g~~lrv~v~~~~~~~p~~~~~~~~~~~~G~~~dll~~l~~~ln~~~~~~~~~~~~~~~n~~~~~l~~~l~~g~~D~~~~ 539 (930)
..++|++|+.. .+.|..... ...++++.+++++|.++++... .+|++++..|..|++|+++.
T Consensus 12 ~~~~l~~Gv~p--~~~~~~~~~--------~~~~l~~~L~k~lG~~ve~~~~--------~~~~~~i~aL~~G~vDia~~ 73 (321)
T 3p7i_A 12 QEKALNFGIIS--TESQQNLKP--------QWTPFLQDMEKKLGVKVNAFFA--------PDYAGIIQGMRFNKVDIAWY 73 (321)
T ss_dssp --CCEEEEECC--SSCHHHHHH--------HHHHHHHHHHHHHTSCEEEECC--------SSHHHHHHHHHTTSCSEEEC
T ss_pred cCCcEEEEEec--CCCHHHHHH--------HHHHHHHHHHHHHCCCEEEEec--------CCHHHHHHHHHcCCCcEEEE
Confidence 45789999985 344443322 1247999999999976554422 56999999999999999974
Q ss_pred -cEEEecC--ccceeeeccccc-----ccceEEEEeccCCCcCcceecccCchhHHHHHHHHHHHHHHhhhheeeccCCC
Q 002371 540 -DIAIVTN--RTKAVDFTQPYI-----ESGLVVVAPVRKLNSSAWAFLRPFTPLMWAVTGVFFLVVGTVVWILEHRLNDE 611 (930)
Q Consensus 540 -~~~~t~~--R~~~vdfs~p~~-----~~~~~~~v~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~~~~~~~~~~~~~ 611 (930)
+..++.. |.....|..|+. ....+++|++.
T Consensus 74 ~~~~~~~~~~~~~~~~~a~~~~~~g~~~y~~~lvv~~d------------------------------------------ 111 (321)
T 3p7i_A 74 GNLSAMEAVDRANGQVFAQTVAADGSPGYWSVLIVNKD------------------------------------------ 111 (321)
T ss_dssp CHHHHHHHHHHSCEEEEEEEEETTCCSSBCEEEEEETT------------------------------------------
T ss_pred ChHHHHHHHHhcCCEEEEEEeccCCCcceEEEEEEECC------------------------------------------
Confidence 3444433 223333433221 01134555543
Q ss_pred CCCCCcccchhhHHHHHHHhhccccCCcccchhHHHHHHHHHHHHHhhhhhhhhhheeeeeccccCCCCChHHhhh--CC
Q 002371 612 FRGPPRKQIVTVLWFSFSTMFFAHRENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIDTLMT--SN 689 (930)
Q Consensus 612 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~--s~ 689 (930)
.+|++++||++ .|
T Consensus 112 -----------------------------------------------------------------s~i~sl~DL~~~~kg 126 (321)
T 3p7i_A 112 -----------------------------------------------------------------SPINNLNDLLAKRKD 126 (321)
T ss_dssp -----------------------------------------------------------------CSCCSHHHHHHTGGG
T ss_pred -----------------------------------------------------------------CCCCCHHHHHhhcCC
Confidence 47999999932 25
Q ss_pred CeEEEE-eCchh----HHH-HHHhcCCCcc--ceEeCCCHHHHHHHHHcCCcEEEEccchhhHHHHhcC----cceEEeC
Q 002371 690 DRVGYQ-VGSFA----ENY-LIEELSIPKS--RLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSDH----CQFSVRG 757 (930)
Q Consensus 690 ~~i~~~-~~s~~----~~~-l~~~~~~~~~--~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~----~~l~~~~ 757 (930)
.++++. .++.. ..+ +....+.... +.+.+.+.++.+.+|.+|++|+.+.+...+..+.++. .+++++.
T Consensus 127 k~va~~~~gsts~~l~~~~~l~~~~Gi~~~~~~~v~~~~~~~a~~al~~G~vDa~~~~~~~~~~~~~~~p~~~~~lrvl~ 206 (321)
T 3p7i_A 127 LTFGNGDPNSTSGFLVPGYYVFAKNNISASDFKRTVNAGHETNALAVANKQVDVATNNTENLDKLKTSAPEKLKELKVIW 206 (321)
T ss_dssp CEEEECCTTCTTTTHHHHHHTTGGGTCCGGGSSEEEECCHHHHHHHHHTTSSSEEEEEHHHHHTHHHHCHHHHTTEEEEE
T ss_pred CEEEeCCCCccHHHHHHHHHHHHHcCCChhHceeeecCCHHHHHHHHHCCCceEEEechHHHHHHHHhCcchhccEEEEE
Confidence 678863 33322 222 2233344332 2345667889999999999999999988888777653 3677776
Q ss_pred CccccCccEEEecCCCc--chhHHHHHHHhccccccHHHHHHhhc
Q 002371 758 QEFTKSGWGFAFPRDSP--LAIDMSTAILTLSENGELQRIHDKWL 800 (930)
Q Consensus 758 ~~~~~~~~~~~~~k~sp--l~~~~n~~i~~l~e~G~~~~~~~~~~ 800 (930)
.......++++++|+.| +++.++.+|.++.++|..+.+.+++-
T Consensus 207 ~s~~~p~~~i~~~k~~~~~l~~~l~~aL~~~~~d~~~~~~l~~~g 251 (321)
T 3p7i_A 207 KSPLIPGDPIVWRKNLSETTKDKIYDFFMNYGKTPEEKAVLERLG 251 (321)
T ss_dssp ECSCBCCCEEEEETTSCHHHHHHHHHHHHHTTCSHHHHHHHHHHT
T ss_pred EcCCCCCCceeeeCCCCHHHHHHHHHHHHhcCCCHHHHHHHHhcC
Confidence 54344467899999954 99999999999999998888877663
No 76
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=98.64 E-value=1.7e-06 Score=92.99 Aligned_cols=208 Identities=12% Similarity=0.046 Sum_probs=141.2
Q ss_pred EEEeEEeecCCCcchHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEc-cCChhhHH
Q 002371 27 LNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVG-PQSAVMAH 105 (930)
Q Consensus 27 I~IG~~~~l~~~~G~~~~~a~~lAve~iN~~ggil~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiG-p~~S~~~~ 105 (930)
++||++.|....+......|++.++++. |+++.+.. .+..++....+...+++.++|++||. |..+....
T Consensus 2 ~~Ig~i~~~~~~~~~~~~~gi~~~~~~~--------g~~~~~~~-~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~ 72 (313)
T 2h3h_A 2 LTIGVIGKSVHPYWSQVEQGVKAAGKAL--------GVDTKFFV-PQKEDINAQLQMLESFIAEGVNGIAIAPSDPTAVI 72 (313)
T ss_dssp CEEEEECSCSSHHHHHHHHHHHHHHHHH--------TCEEEEEC-CSSSCHHHHHHHHHHHHHTTCSEEEECCSSTTTTH
T ss_pred eEEEEEeCCCcHHHHHHHHHHHHHHHHc--------CCEEEEEC-CCCCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHH
Confidence 6899999874336566788888888874 56655432 24668888888888999889988885 44444333
Q ss_pred HHHHhhhcCCCcEEEeecCCCCCCCCCCCeEEEccCChHHHHHHHHHHHHHc--CCcEEEEEEec--CCcCcchHHHHHH
Q 002371 106 VLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYF--GWGEVIAIFND--DDQGRNGVTALGD 181 (930)
Q Consensus 106 av~~~~~~~~vp~is~~a~~~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~~--~w~~vaii~~d--~~~g~~~~~~~~~ 181 (930)
.....+.+.++|+|......+. .+.+..+..++...+..+++++... |.++|+++..+ ........+.|.+
T Consensus 73 ~~~~~~~~~~iPvV~~~~~~~~-----~~~~~~V~~d~~~~g~~a~~~L~~~~~G~~~I~~i~~~~~~~~~~~R~~gf~~ 147 (313)
T 2h3h_A 73 PTIKKALEMGIPVVTLDTDSPD-----SGRYVYIGTDNYQAGYTAGLIMKELLGGKGKVVIGTGSLTAMNSLQRIQGFKD 147 (313)
T ss_dssp HHHHHHHHTTCCEEEESSCCTT-----SCCSCEEECCHHHHHHHHHHHHHHHHTSCSEEEEEESCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCeEEEeCCCCCC-----cceeEEECcCHHHHHHHHHHHHHHHcCCCCEEEEEECCCCCccHHHHHHHHHH
Confidence 4455566789999987554321 1223345577777888888988877 99999999864 3445567789999
Q ss_pred HHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcC--CceEEEEEcchhhHHHHHHHHHHcCCCCCceEEEEeC
Q 002371 182 KLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATT 254 (930)
Q Consensus 182 ~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~--~~~viv~~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~ 254 (930)
++++.|+++........ +..+....+.++.+. ++++|+. .+...+..+++++++.|. ..+...++.+
T Consensus 148 ~l~~~g~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~a~g~~~al~~~G~-p~dv~vvg~d 216 (313)
T 2h3h_A 148 AIKDSEIEIVDILNDEE----DGARAVSLAEAALNAHPDLDAFFG-VYAYNGPAQALVVKNAGK-VGKVKIVCFD 216 (313)
T ss_dssp HHTTSSCEEEEEEECSS----CHHHHHHHHHHHHHHCTTCCEEEE-CSTTHHHHHHHHHHHTTC-TTTSEEEEEC
T ss_pred HhcCCCCEEEEeecCCC----CHHHHHHHHHHHHHHCcCceEEEE-cCCCccHHHHHHHHHcCC-CCCeEEEEeC
Confidence 99999998765332222 245555666666554 4577665 455678889999999994 3344444444
No 77
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=98.63 E-value=1.2e-06 Score=92.22 Aligned_cols=209 Identities=10% Similarity=-0.030 Sum_probs=146.1
Q ss_pred EEEeEEeec-CCCcchHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcC-cEEEEccC-Chhh
Q 002371 27 LNVGAIFSF-GTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETD-TLAIVGPQ-SAVM 103 (930)
Q Consensus 27 I~IG~~~~l-~~~~G~~~~~a~~lAve~iN~~ggil~g~~l~l~~~D~~~~~~~a~~~a~~li~~~-v~aiiGp~-~S~~ 103 (930)
++||++.|- +..+-.....+++-++++. |+++.+...|+..++....+....+++++ +++||-.. .+..
T Consensus 1 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~--------g~~~~~~~~~~~~~~~~~~~~i~~l~~~~~vdgii~~~~~~~~ 72 (276)
T 3ksm_A 1 PKLLLVLKGDSNAYWRQVYLGAQKAADEA--------GVTLLHRSTKDDGDIAGQIQILSYHLSQAPPDALILAPNSAED 72 (276)
T ss_dssp CEEEEECSCSSSTHHHHHHHHHHHHHHHH--------TCEEEECCCSSTTCHHHHHHHHHHHHHHSCCSEEEECCSSTTT
T ss_pred CeEEEEeCCCCChHHHHHHHHHHHHHHHc--------CCEEEEECCCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCHHH
Confidence 589999985 4555667788888888874 67777666667788888888899999988 99998544 3344
Q ss_pred HHHHHHhhhcCCCcEEEeecCCCCCCCCCCCeEEEccCChHHHHHHHHHHHHHc----CCcEEEEEEec--CCcCcchHH
Q 002371 104 AHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYF----GWGEVIAIFND--DDQGRNGVT 177 (930)
Q Consensus 104 ~~av~~~~~~~~vp~is~~a~~~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~~----~w~~vaii~~d--~~~g~~~~~ 177 (930)
.......+.+.++|++......+ .. +++.....++...+..+++++... |.++++++..+ ....+...+
T Consensus 73 ~~~~~~~~~~~~ipvV~~~~~~~---~~--~~~~~V~~d~~~~g~~~~~~l~~~~~~~G~~~i~~i~~~~~~~~~~~R~~ 147 (276)
T 3ksm_A 73 LTPSVAQYRARNIPVLVVDSDLA---GD--AHQGLVATDNYAAGQLAARALLATLDLSKERNIALLRLRAGNASTDQREQ 147 (276)
T ss_dssp THHHHHHHHHTTCCEEEESSCCS---SS--CSSEEEECCHHHHHHHHHHHHHHHSCTTSCEEEEECBCCTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCcEEEEecCCC---CC--CcceEEccCHHHHHHHHHHHHHHhcCcCCCceEEEEEcCCCchhHHHHHH
Confidence 45556677888999998754432 11 223345577888888899998887 99999999854 334556788
Q ss_pred HHHHHHHhc-CcEEEEEEecCCCCCCChhHHHHHHHHHhcC--CceEEEEEcchhhHHHHHHHHHHcCCCCCceEEEEeC
Q 002371 178 ALGDKLAEI-RCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATT 254 (930)
Q Consensus 178 ~~~~~l~~~-g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~--~~~viv~~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~ 254 (930)
.|.+++++. |+++... .... .+..+....+.++.+. ++++|+ +.+...+..+++++++.|+ ..+...++.+
T Consensus 148 gf~~~l~~~~~~~~~~~--~~~~--~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~-p~di~vig~d 221 (276)
T 3ksm_A 148 GFLDVLRKHDKIRIIAA--PYAG--DDRGAARSEMLRLLKETPTIDGLF-TPNESTTIGALVAIRQSGM-SKQFGFIGFD 221 (276)
T ss_dssp HHHHHHTTCTTEEEEEC--CBCC--SSHHHHHHHHHHHHHHCSCCCEEE-CCSHHHHHHHHHHHHHTTC-TTSSEEEEES
T ss_pred HHHHHHHhCCCcEEEEE--ecCC--CcHHHHHHHHHHHHHhCCCceEEE-ECCchhhhHHHHHHHHcCC-CCCeEEEEeC
Confidence 999999998 8887632 2222 2345555566666544 456554 4456677889999999997 4444444444
No 78
>2ozz_A Hypothetical protein YHFZ; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; 2.30A {Shigella flexneri 2A} SCOP: c.94.1.1
Probab=98.62 E-value=1.9e-07 Score=93.16 Aligned_cols=181 Identities=11% Similarity=0.019 Sum_probs=130.0
Q ss_pred ceEEEEeHHHHHHHHHHCCCcccEEEEeCCCCCCCCCHHHHHHHHHcCcccEEEecEEEecC------ccceeeeccccc
Q 002371 485 DIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGDIAIVTN------RTKAVDFTQPYI 558 (930)
Q Consensus 485 ~~~~G~~~dll~~l~~~ln~~~~~~~~~~~~~~~n~~~~~l~~~l~~g~~D~~~~~~~~t~~------R~~~vdfs~p~~ 558 (930)
.++.|+.--|.+.+. |+++.+.++. .+++.+..|++|++|+++.++..+++ |...+||+.||+
T Consensus 28 ~~yeGlatgl~~~f~---gi~~~i~~mr--------g~~~RI~aL~~gk~D~aI~S~~aa~e~~~~~~r~~~vdFg~~yY 96 (231)
T 2ozz_A 28 RLYEGLASGLKAQFD---GIPFYYAHMR--------GADIRVECLLNGVYDMAVVSRLAAESYLSQNNLCIALELGPHTY 96 (231)
T ss_dssp HHHHHHHHHHHHTTT---TSCEEEEECS--------CHHHHHHHHHTTSCSEEEEEHHHHHHHHHHSCEEEEEECCTTSS
T ss_pred hhhhHHHHHHHHHhc---CCcEEEEEcc--------ChHHHHHHHHcCCCCEEEEecccchhhhcccCeEEEEEcCCCcc
Confidence 456677766666663 7665555542 59999999999999999999999999 999999999999
Q ss_pred ccceEEEEeccCCCcCcceecccCchhHHHHHHHHHHHHHHhhhheeeccCCCCCCCCcccchhhHHHHHHHhhccccCC
Q 002371 559 ESGLVVVAPVRKLNSSAWAFLRPFTPLMWAVTGVFFLVVGTVVWILEHRLNDEFRGPPRKQIVTVLWFSFSTMFFAHREN 638 (930)
Q Consensus 559 ~~~~~~~v~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 638 (930)
.+.-.++++.+..
T Consensus 97 v~~h~li~~~~~~------------------------------------------------------------------- 109 (231)
T 2ozz_A 97 VGEHQLICRKGES------------------------------------------------------------------- 109 (231)
T ss_dssp SCCEEEEEETTCG-------------------------------------------------------------------
T ss_pred ccCeEEEEeCCCc-------------------------------------------------------------------
Confidence 8777788776651
Q ss_pred cccchhHHHHHHHHHHHHHhhhhhhhhhheeeeeccccCCCCChHHhhhCCCeEEEEeCchhHHHHHHhcCCCccceEeC
Q 002371 639 TVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIDTLMTSNDRVGYQVGSFAENYLIEELSIPKSRLVAL 718 (930)
Q Consensus 639 ~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~s~~~i~~~~~s~~~~~l~~~~~~~~~~~~~~ 718 (930)
..| ++||++.||.-+.++.+..- ....+..+
T Consensus 110 --------------------------------------~~i----------krVGvd~gS~dq~~lt~~~~-~g~~Ve~v 140 (231)
T 2ozz_A 110 --------------------------------------GNV----------KRVGLDSRSADQKIMTDVFF-GDSDVERV 140 (231)
T ss_dssp --------------------------------------GGC----------CEEEECTTCHHHHHHHHHHH-TTSCCEEE
T ss_pred --------------------------------------ccc----------EEEEecCCChhHHHHHhhhc-CCCeEEEE
Confidence 122 68999999998888866442 44555567
Q ss_pred -CCHHHHHHHHHcCCcEEEEc--cchhhHHHHhcCcceEE--eCC---ccccCccEEEecCCCc-chhHHHHHHHhcccc
Q 002371 719 -GSPEEYAIALENRTVAAVVD--ERPYIDLFLSDHCQFSV--RGQ---EFTKSGWGFAFPRDSP-LAIDMSTAILTLSEN 789 (930)
Q Consensus 719 -~~~~~~~~~l~~g~~~a~~~--~~~~~~~~~~~~~~l~~--~~~---~~~~~~~~~~~~k~sp-l~~~~n~~i~~l~e~ 789 (930)
.+..+++.+|.+|++||++. +.+... ...++.. +.. ........++++||.+ +.+.+|+.|. .
T Consensus 141 e~~y~~~i~~L~~G~IDA~Iwn~d~~~a~----~~~~l~~~~l~~~~~~~~~~eavI~v~k~n~~L~~~ln~~I~----~ 212 (231)
T 2ozz_A 141 DLSYHESLQRIVKGDVDAVIWNVVAENEL----TMLGLEATPLTDDPRFLQATEAVVLTRVDDYPMQQLLRAVVD----K 212 (231)
T ss_dssp ECCHHHHHHHHHHTSCCEEEEEC-CHHHH----HHTTEEEEECCSCHHHHHTTCEEEEEETTCHHHHHHHHHHCC----H
T ss_pred ECCHHHHHHHHHcCCccEEEEcCcchhhh----cCCCcceeccccccccccCCceEEEEECCCHHHHHHHHHHhH----H
Confidence 78999999999999999999 555554 2223332 222 2234455688999975 8888887763 2
Q ss_pred ccHHHHHHhhc
Q 002371 790 GELQRIHDKWL 800 (930)
Q Consensus 790 G~~~~~~~~~~ 800 (930)
..+-.+.++-+
T Consensus 213 ~~v~~~Q~~V~ 223 (231)
T 2ozz_A 213 HALLAHQQRVV 223 (231)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33444444443
No 79
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=98.56 E-value=2e-06 Score=91.98 Aligned_cols=203 Identities=15% Similarity=0.119 Sum_probs=132.6
Q ss_pred CCceEEEeEEeecCCCcchHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccCChh
Q 002371 23 KPEVLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAV 102 (930)
Q Consensus 23 ~~~~I~IG~~~~l~~~~G~~~~~a~~lAve~iN~~ggil~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~S~ 102 (930)
++.+.+||++.+++.++-.....|++ +.+++.|.+. |+++.+.+.|++.++........+|.+++|++||.....
T Consensus 5 ~~~t~~IGvi~~~~~p~~~~~~~gi~---~~l~~~Gy~~-g~~v~l~~~~~~~~~~~~~~~~~~l~~~~vDgII~~~~~- 79 (302)
T 2qh8_A 5 MAKTAKVAVSQIVEHPALDATRQGLL---DGLKAKGYEE-GKNLEFDYKTAQGNPAIAVQIARQFVGENPDVLVGIATP- 79 (302)
T ss_dssp --CCEEEEEEESSCCHHHHHHHHHHH---HHHHHTTCCB-TTTEEEEEEECTTCHHHHHHHHHHHHHTCCSEEEEESHH-
T ss_pred ccCCcEEEEEEeccChhHHHHHHHHH---HHHHHcCCCC-CCceEEEEecCCCCHHHHHHHHHHHHhCCCCEEEECChH-
Confidence 34678999985444444344455554 4455566553 789999999999999999999999998899999875432
Q ss_pred hHHHHHHhhhcCCCcEEEeecCCCCCCC------CCCCeEEEccCChHHHHHHHHHHHHHc--CCcEEEEEEecCC-cCc
Q 002371 103 MAHVLSHLANELQVPLLSFTALDPTLSP------LQYPFFVQTAPNDLYLMSAIAEMVSYF--GWGEVIAIFNDDD-QGR 173 (930)
Q Consensus 103 ~~~av~~~~~~~~vp~is~~a~~~~ls~------~~~~~~fr~~p~~~~~~~ai~~~l~~~--~w~~vaii~~d~~-~g~ 173 (930)
....+.. ...++|+|..+..++.... ...+++.... +...+...++++... |.|++++|+.... .++
T Consensus 80 ~~~~~~~--~~~~iPvV~~~~~~~~~~~~v~~~~~~~~~~~gv~--~~~~~~~~~~~l~~~~Pg~~~I~~i~~~~~~~~~ 155 (302)
T 2qh8_A 80 TAQALVS--ATKTIPIVFTAVTDPVGAKLVKQLEQPGKNVTGLS--DLSPVEQHVELIKEILPNVKSIGVVYNPGEANAV 155 (302)
T ss_dssp HHHHHHH--HCSSSCEEEEEESCTTTTTSCSCSSSCCSSEEEEE--CCCCHHHHHHHHHHHSTTCCEEEEEECTTCHHHH
T ss_pred HHHHHHh--cCCCcCEEEEecCCHhhcCccccccCCCCCEEEEE--CCcCHHHHHHHHHHhCCCCcEEEEEecCCCcchH
Confidence 2333333 2679999987665543211 1123444433 222345666787776 9999999996543 356
Q ss_pred chHHHHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchhhHHHHHHHHHHcC
Q 002371 174 NGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLG 242 (930)
Q Consensus 174 ~~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~~~~~~~~~a~~~g 242 (930)
...+.+++++++.|+++...... . ..+....+.++.. ++++|+...+. .+...++++.+.|
T Consensus 156 ~r~~g~~~al~~~gi~~~~~~~~--~----~~~~~~~~~~l~~-~~dai~~~~D~-~a~g~~~~l~~~~ 216 (302)
T 2qh8_A 156 SLMELLKLSAAKHGIKLVEATAL--K----SADVQSATQAIAE-KSDVIYALIDN-TVASAIEGMIVAA 216 (302)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECS--S----GGGHHHHHHHHGG-GCSEEEECSCH-HHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCEEEEEecC--C----hHHHHHHHHHHhc-cCCEEEECCcH-hHHHHHHHHHHHH
Confidence 67789999999999988754322 2 4567777888864 78988775433 3333344444443
No 80
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=98.54 E-value=6.3e-06 Score=89.37 Aligned_cols=205 Identities=9% Similarity=0.016 Sum_probs=138.9
Q ss_pred ceEEEeEEeec-CCCcchHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcC--cEEEEccCCh
Q 002371 25 EVLNVGAIFSF-GTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETD--TLAIVGPQSA 101 (930)
Q Consensus 25 ~~I~IG~~~~l-~~~~G~~~~~a~~lAve~iN~~ggil~g~~l~l~~~D~~~~~~~a~~~a~~li~~~--v~aiiGp~~S 101 (930)
...+||++.|- +..+-.....|++-++++. |+++ .+.++..++.........+++++ |++||.....
T Consensus 4 ~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~l--~~~~~~~~~~~~~~~i~~l~~~~~~vdgiIi~~~~ 73 (332)
T 2rjo_A 4 GQTTLACSFRSLTNPYYTAFNKGAQSFAKSV--------GLPY--VPLTTEGSSEKGIADIRALLQKTGGNLVLNVDPND 73 (332)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHHHHHHHHH--------TCCE--EEEECTTCHHHHHHHHHHHHHHTTTCEEEEECCSS
T ss_pred CccEEEEEecCCCcHHHHHHHHHHHHHHHHc--------CCEE--EEecCCCCHHHHHHHHHHHHHCCCCCCEEEEeCCC
Confidence 35689999985 3444456677777777763 4544 44577778887777888888888 9998864433
Q ss_pred h-hHHHHHHhhhcCCCcEEEeecCCCCCCCCCC--CeEEEccCChHHHHHHHHHHHHH--cCCcEEEEEEec--CCcCcc
Q 002371 102 V-MAHVLSHLANELQVPLLSFTALDPTLSPLQY--PFFVQTAPNDLYLMSAIAEMVSY--FGWGEVIAIFND--DDQGRN 174 (930)
Q Consensus 102 ~-~~~av~~~~~~~~vp~is~~a~~~~ls~~~~--~~~fr~~p~~~~~~~ai~~~l~~--~~w~~vaii~~d--~~~g~~ 174 (930)
. ........+.+.++|+|......+..+...+ +.+..+..++...+..+++++.. .|.++|+++... ......
T Consensus 74 ~~~~~~~~~~~~~~~iPvV~~~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~~~G~~~I~~i~g~~~~~~~~~ 153 (332)
T 2rjo_A 74 SADARVIVEACSKAGAYVTTIWNKPKDLHPWDYNPNYVAHLSYDGVAYGEETATQLFKSMGGKGGVVALGGIFSNVPAIE 153 (332)
T ss_dssp HHHHHHHHHHHHHHTCEEEEESCCCTTCCGGGGTTTEEEEEECCHHHHHHHHHHHHHHHTTTCEEEEEEECCTTCHHHHH
T ss_pred HHHHHHHHHHHHHCCCeEEEECCCCCcccchhcccceeEEEccChHHHHHHHHHHHHHHcCCCCeEEEEECCCCCccHHH
Confidence 3 2234455566679999987654332111111 35666778888888889999877 699999999854 334556
Q ss_pred hHHHHHHHHHhc-CcEEEEEEecCCCCCCChhHHHHHHHHHhcC---CceEEEEEcchhhHHHHHHHHHHcCCC
Q 002371 175 GVTALGDKLAEI-RCKISYKSALPPDQSVTETDVRNELVKVRMM---EARVIVVHGYSRTGLMVFDVAQRLGMM 244 (930)
Q Consensus 175 ~~~~~~~~l~~~-g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~---~~~viv~~~~~~~~~~~~~~a~~~g~~ 244 (930)
..+.|.+++++. |+++.....-. .+..+....+.++.+. ++++|+ +.+...+..+++++++.|+.
T Consensus 154 R~~Gf~~al~~~pgi~~~~~~~~~----~~~~~~~~~~~~ll~~~~~~~~aI~-~~nd~~A~g~~~al~~~G~~ 222 (332)
T 2rjo_A 154 RKAGLDAALKKFPGIQLLDFQVAD----WNSQKAFPIMQAWMTRFNSKIKGVW-AANDDMALGAIEALRAEGLA 222 (332)
T ss_dssp HHHHHHHHHHTCTTEEEEEEEECT----TCHHHHHHHHHHHHHHHGGGEEEEE-ESSHHHHHHHHHHHHHTTCB
T ss_pred HHHHHHHHHHhCCCcEEEeeccCC----CCHHHHHHHHHHHHHhcCCCeeEEE-ECCCchHHHHHHHHHHcCCC
Confidence 778899999999 98876432222 2244555556665544 466655 45566788899999999986
No 81
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=98.54 E-value=1.7e-06 Score=92.03 Aligned_cols=212 Identities=9% Similarity=-0.020 Sum_probs=139.5
Q ss_pred CCceEEEeEEeec---CCCcchHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccC
Q 002371 23 KPEVLNVGAIFSF---GTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQ 99 (930)
Q Consensus 23 ~~~~I~IG~~~~l---~~~~G~~~~~a~~lAve~iN~~ggil~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~ 99 (930)
.....+||+++|. +..+......|++.++++. |+++ .+.++..++.........+++++|++||...
T Consensus 16 ~~~~~~Ig~i~~~~~~~~~~~~~~~~gi~~~~~~~--------g~~~--~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~ 85 (296)
T 3brq_A 16 AKSTQTLGLVVTNTLYHGIYFSELLFHAARMAEEK--------GRQL--LLADGKHSAEEERQAIQYLLDLRCDAIMIYP 85 (296)
T ss_dssp ---CCEEEEEECGGGCC--CHHHHHHHHHHHHHHT--------TCEE--EEECCTTSHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred cCCCceEEEEeCCcccCCchHHHHHHHHHHHHHHC--------CCEE--EEEeCCCCHHHHHHHHHHHHhcCCCEEEEec
Confidence 3456899999996 4566677888888888762 5554 4567777888877888888888999888644
Q ss_pred ChhhHHHHHHhhhc-CCCcEEEeecCCCCCCCCCCCeEEEccCChHHHHHHHHHHHHHcCCcEEEEEEecC--CcCcchH
Q 002371 100 SAVMAHVLSHLANE-LQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDD--DQGRNGV 176 (930)
Q Consensus 100 ~S~~~~av~~~~~~-~~vp~is~~a~~~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~~~w~~vaii~~d~--~~g~~~~ 176 (930)
.+..... ...+.+ .++|+|......+ + +.+..+..++...+..+++++...|.++++++..+. ..+....
T Consensus 86 ~~~~~~~-~~~l~~~~~iPvV~~~~~~~---~---~~~~~V~~d~~~~~~~a~~~l~~~G~~~I~~i~~~~~~~~~~~R~ 158 (296)
T 3brq_A 86 RFLSVDE-IDDIIDAHSQPIMVLNRRLR---K---NSSHSVWCDHKQTSFNAVAELINAGHQEIAFLTGSMDSPTSIERL 158 (296)
T ss_dssp SSSCHHH-HHHHHHTCSSCEEEESCCCS---S---SGGGEECCCHHHHHHHHHHHHHHTTCCSEEEECCCTTCHHHHHHH
T ss_pred CCCChHH-HHHHHhcCCCCEEEEccccC---C---CCCCEEEEchHHHHHHHHHHHHHCCCceEEEEcCCCCCccHHHHH
Confidence 3322222 344555 7999998754322 1 123345567777778888998888999999998653 3456677
Q ss_pred HHHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhc--CCceEEEEEcchhhHHHHHHHHHHcCCCCCc-eEEEEe
Q 002371 177 TALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRM--MEARVIVVHGYSRTGLMVFDVAQRLGMMDSG-YVWIAT 253 (930)
Q Consensus 177 ~~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~--~~~~viv~~~~~~~~~~~~~~a~~~g~~~~~-~~~i~~ 253 (930)
+.|.+++++.|+++.....+... .+..+....+.++.+ .++++|+. .+...+..+++++++.|+..++ ...++.
T Consensus 159 ~gf~~~l~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~a~g~~~al~~~g~~vP~di~vvg~ 235 (296)
T 3brq_A 159 AGYKDALAQHGIALNEKLIANGK--WTPASGAEGVEMLLERGAKFSALVA-SNDDMAIGAMKALHERGVAVPEQVSVIGF 235 (296)
T ss_dssp HHHHHHHHTTTCCCCGGGEECCC--SSHHHHHHHHHHHHTC--CCSEEEE-SSHHHHHHHHHHHHHHTCCTTTTCEEEEE
T ss_pred HHHHHHHHHcCCCCChhhEEeCC--CChhHHHHHHHHHHhCCCCCCEEEE-CChHHHHHHHHHHHHcCCCCCCceEEEee
Confidence 88999999999865422112222 224444555666654 35777664 4566788899999999986543 334444
Q ss_pred C
Q 002371 254 T 254 (930)
Q Consensus 254 ~ 254 (930)
+
T Consensus 236 d 236 (296)
T 3brq_A 236 D 236 (296)
T ss_dssp S
T ss_pred c
Confidence 4
No 82
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=98.53 E-value=5.9e-06 Score=88.18 Aligned_cols=211 Identities=9% Similarity=-0.045 Sum_probs=138.9
Q ss_pred ceEEEeEEeecC-CCcchHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEE-ccCChh
Q 002371 25 EVLNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIV-GPQSAV 102 (930)
Q Consensus 25 ~~I~IG~~~~l~-~~~G~~~~~a~~lAve~iN~~ggil~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aii-Gp~~S~ 102 (930)
++.+||++.|.. ..+......|++.++++. |+++.+ +.++..++........+++.+++++|| .|..+.
T Consensus 3 ~~~~Ig~i~~~~~~~~~~~~~~g~~~~~~~~--------g~~~~~-~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~ 73 (303)
T 3d02_A 3 AEKTVVNISKVDGMPWFNRMGEGVVQAGKEF--------NLNASQ-VGPSSTDAPQQVKIIEDLIARKVDAITIVPNDAN 73 (303)
T ss_dssp -CEEEEEECSCSSCHHHHHHHHHHHHHHHHT--------TEEEEE-ECCSSSCHHHHHHHHHHHHHTTCSEEEECCSCHH
T ss_pred CceEEEEEeccCCChHHHHHHHHHHHHHHHc--------CCEEEE-ECCCCCCHHHHHHHHHHHHHcCCCEEEEecCChH
Confidence 468999999864 455667788888888874 444432 234677888888888889988998876 455544
Q ss_pred hHHHHHHhhhcCCCcEEEeecCCCCCCCCCCCeEEEccCChHHHHHHHHHHHHH-cCCc-EEEEEEec--CCcCcchHHH
Q 002371 103 MAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSY-FGWG-EVIAIFND--DDQGRNGVTA 178 (930)
Q Consensus 103 ~~~av~~~~~~~~vp~is~~a~~~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~-~~w~-~vaii~~d--~~~g~~~~~~ 178 (930)
........+...++|+|...... ... +.+.....++...+..+++++.. .|.+ +++++..+ ........+.
T Consensus 74 ~~~~~~~~~~~~~ipvV~~~~~~--~~~---~~~~~v~~d~~~~g~~a~~~l~~~~g~~~~i~~i~g~~~~~~~~~R~~g 148 (303)
T 3d02_A 74 VLEPVFKKARDAGIVVLTNESPG--QPS---ANWDVEIIDNEKFAAEYVEHMAKRMGGKGGYVIYVGSLTVPQHNLWADL 148 (303)
T ss_dssp HHHHHHHHHHHTTCEEEEESCTT--CTT---CSEEEESSCHHHHHHHHHHHHHHHTTTCEEEEEECSCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCeEEEEecCC--CCC---CceEEEecCHHHHHHHHHHHHHHHhCcCceEEEEecCCCCccHHHHHHH
Confidence 44445566777899999875431 111 23455667777888888898777 8887 99988743 3334556788
Q ss_pred HHHHHHhcC--cEEEEEEecCCCCCCChhHHHHHHHHHhcCC--ceEEEEEcchhhHHHHHHHHHHcCCCCCceEEEEeC
Q 002371 179 LGDKLAEIR--CKISYKSALPPDQSVTETDVRNELVKVRMME--ARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATT 254 (930)
Q Consensus 179 ~~~~l~~~g--~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~--~~viv~~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~ 254 (930)
|.+++++.+ +++... .+... .+..+....+.++.+.. +++|+ +.+...+..+++++++.|+. .+...++.+
T Consensus 149 f~~~l~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~-~dv~vig~d 223 (303)
T 3d02_A 149 LVKYQKEHYPDMHEVTR-RMPVA--ESVDDSRRTTLDLMKTYPDLKAVV-SFGSNGPIGAGRAVKEKRAK-NKVAVYGMM 223 (303)
T ss_dssp HHHHHHHHCTTEEESSS-CBSCT--TCHHHHHHHHHHHHHHCTTEEEEE-ESSTTHHHHHHHHHHHTTCT-TTCEEEECC
T ss_pred HHHHHHhhCCCCEEEEe-ecCCC--CCHHHHHHHHHHHHHhCCCCCEEE-EeCCcchhHHHHHHHhcCCC-CCeEEEEeC
Confidence 999998765 443321 11212 23455556667665544 45554 44556788899999999986 343444433
No 83
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=98.52 E-value=4.5e-06 Score=88.45 Aligned_cols=210 Identities=9% Similarity=-0.059 Sum_probs=140.6
Q ss_pred eEEEeEEeecC---CCcchHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccCChh
Q 002371 26 VLNVGAIFSFG---TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAV 102 (930)
Q Consensus 26 ~I~IG~~~~l~---~~~G~~~~~a~~lAve~iN~~ggil~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~S~ 102 (930)
..+||++.|.. ..+......|++.++++. |+++.+...|+..++....+....++.++|++||....+.
T Consensus 5 ~~~Ig~v~~~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~ 76 (289)
T 3brs_A 5 QYYMICIPKVLDDSSDFWSVLVEGAQMAAKEY--------EIKLEFMAPEKEEDYLVQNELIEEAIKRKPDVILLAAADY 76 (289)
T ss_dssp CCEEEEECSCCCSSSHHHHHHHHHHHHHHHHH--------TCEEEECCCSSTTCHHHHHHHHHHHHHTCCSEEEECCSCT
T ss_pred CcEEEEEeCCCCCCchHHHHHHHHHHHHHHHc--------CCEEEEecCCCCCCHHHHHHHHHHHHHhCCCEEEEeCCCh
Confidence 46799999853 455556778888888775 5666665555567888888888888888999888643332
Q ss_pred hH-HHHHHhhhcCCCcEEEeecCCCCCCCCCCCeEEEccCChHHHHHHHHHHHHHc-C-CcEEEEEEec--CCcCcchHH
Q 002371 103 MA-HVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYF-G-WGEVIAIFND--DDQGRNGVT 177 (930)
Q Consensus 103 ~~-~av~~~~~~~~vp~is~~a~~~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~~-~-w~~vaii~~d--~~~g~~~~~ 177 (930)
.. ......+.+.++|+|......+ + .+.+..+.+++...+..+++++... | .++++++..+ ........+
T Consensus 77 ~~~~~~~~~~~~~~iPvV~~~~~~~---~--~~~~~~V~~D~~~~g~~~~~~L~~~~G~~~~i~~i~~~~~~~~~~~R~~ 151 (289)
T 3brs_A 77 EKTYDAAKEIKDAGIKLIVIDSGMK---Q--DIADITVATDNIQAGIRIGAVTKNLVRKSGKIGVISFVKNSKTAMDREE 151 (289)
T ss_dssp TTTHHHHTTTGGGTCEEEEESSCCS---S--CCCSEEEECCHHHHHHHHHHHHHHHTSSSCEEEEEESCTTSHHHHHHHH
T ss_pred HHhHHHHHHHHHCCCcEEEECCCCC---C--CcceEEEeeChHHHHHHHHHHHHHHcCCCceEEEEECCCCCccHHHHHH
Confidence 22 2344556678999998754322 1 1234556778888888888988775 6 9999999854 334456678
Q ss_pred HHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcC--CceEEEEEcchhhHHHHHHHHHHcCCCCCceEEEEeC
Q 002371 178 ALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATT 254 (930)
Q Consensus 178 ~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~--~~~viv~~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~ 254 (930)
.|.+++++.|..+....... .+..+....+.++.+. ++++|+ +.+...+..+++++++.|+. .+...++.+
T Consensus 152 gf~~~l~~~g~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~G~~-~di~vvg~d 224 (289)
T 3brs_A 152 GLKIGLSDDSNKIEAIYYCD----SNYDKAYDGTVELLTKYPDISVMV-GLNQYSATGAARAIKDMSLE-AKVKLVCID 224 (289)
T ss_dssp HHHHHHGGGGGGEEEEEECT----TCHHHHHHHHHHHHHHCTTEEEEE-ESSHHHHHHHHHHHHHTTCT-TTSEEEEEE
T ss_pred HHHHHHHhCCCcEEeeecCC----CCHHHHHHHHHHHHHhCCCceEEE-ECCCcchHHHHHHHHhcCCC-CCEEEEEEC
Confidence 89999999987644322212 2245555556665543 366655 45666788899999999986 444444444
No 84
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=98.47 E-value=1.1e-05 Score=86.66 Aligned_cols=206 Identities=12% Similarity=-0.006 Sum_probs=136.0
Q ss_pred EEeEEeecC-CCcchHHHHHHHHHHHHHhcCCCCCCCcEEEEEEe-cCCCChHHHHHHHHHHHhcCcEEEE-ccCChhhH
Q 002371 28 NVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMH-DAKFNGFLSIMGALQFMETDTLAIV-GPQSAVMA 104 (930)
Q Consensus 28 ~IG~~~~l~-~~~G~~~~~a~~lAve~iN~~ggil~g~~l~l~~~-D~~~~~~~a~~~a~~li~~~v~aii-Gp~~S~~~ 104 (930)
+||++.|.. ..+......+++.++++. |+ ++.+. ++..++....+....|+.++|++|| .|..+...
T Consensus 5 ~Igvi~~~~~~~~~~~~~~g~~~~~~~~--------g~--~~~~~~~~~~d~~~q~~~i~~li~~~vdgiii~~~~~~~~ 74 (316)
T 1tjy_A 5 RIAFIPKLVGVGFFTSGGNGAQEAGKAL--------GI--DVTYDGPTEPSVSGQVQLVNNFVNQGYDAIIVSAVSPDGL 74 (316)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHHHHHH--------TC--EEEECCCSSCCHHHHHHHHHHHHHTTCSEEEECCSSSSTT
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHHHh--------CC--EEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCHHHH
Confidence 799999864 445556778888888875 34 44455 4678888888889999999998865 56655544
Q ss_pred HHHHHhhhcCCCcEEEeecCCCCCCCCCCCeEEEccCChHHHHHHHHHHHHH---cCCcEEEEEEec--CCcCcchHHHH
Q 002371 105 HVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSY---FGWGEVIAIFND--DDQGRNGVTAL 179 (930)
Q Consensus 105 ~av~~~~~~~~vp~is~~a~~~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~---~~w~~vaii~~d--~~~g~~~~~~~ 179 (930)
..+...+.+.+||+|.+....+ .. ....+....++...+..+++++.. .|.++++++... +...+...+.+
T Consensus 75 ~~~~~~a~~~gipvV~~d~~~~---~~-~~~~~v~~~D~~~~g~~~~~~L~~~~~~g~~~i~~i~g~~~~~~~~~r~~g~ 150 (316)
T 1tjy_A 75 CPALKRAMQRGVKILTWDSDTK---PE-CRSYYINQGTPKQLGSMLVEMAAHQVDKEKAKVAFFYSSPTVTDQNQWVKEA 150 (316)
T ss_dssp HHHHHHHHHTTCEEEEESSCCC---GG-GCSEEEESCCHHHHHHHHHHHHHHHHCSSSEEEEEEESCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHCcCEEEEecCCCC---CC-CceEEEecCCHHHHHHHHHHHHHHHcCCCCCEEEEEEcCCCChhHHHHHHHH
Confidence 5556667788999998754321 11 112233356667778888888766 578999999843 33445667888
Q ss_pred HHHHHhc--CcEEEEEEecCCCCCCChhHHHHHHHHHhcC--CceEEEEEcchhhHHHHHHHHHHcCCCCCceEEEEeC
Q 002371 180 GDKLAEI--RCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATT 254 (930)
Q Consensus 180 ~~~l~~~--g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~--~~~viv~~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~ 254 (930)
.+.+++. +++++....-.. +..+....++++.+. ++++|+ +.+...+..+++++++.| . .+...++.+
T Consensus 151 ~~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ll~~~~~~~aI~-~~nD~~A~g~~~al~~~G-~-~dv~VvG~D 222 (316)
T 1tjy_A 151 KAKISQEHPGWEIVTTQFGYN----DATKSLQTAEGIIKAYPDLDAII-APDANALPAAAQAAENLK-R-NNLAIVGFS 222 (316)
T ss_dssp HHHHHHHCTTEEEEEEEECTT----CHHHHHHHHHHHHHHCSSCCEEE-ECSTTHHHHHHHHHHHTT-C-CSCEEEEBC
T ss_pred HHHHHhhCCCcEEEEeccCCC----CHHHHHHHHHHHHHhCCCCCEEE-ECCCccHHHHHHHHHHcC-C-CCEEEEEeC
Confidence 8999876 566654322222 245555566666544 456554 445667888899999998 5 444444443
No 85
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=98.47 E-value=4e-06 Score=89.34 Aligned_cols=203 Identities=10% Similarity=-0.025 Sum_probs=143.4
Q ss_pred eEEEeEEeecC-CCcchHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCC--CChHHHHHHHHHHHhcCcEEEE-ccCCh
Q 002371 26 VLNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAK--FNGFLSIMGALQFMETDTLAIV-GPQSA 101 (930)
Q Consensus 26 ~I~IG~~~~l~-~~~G~~~~~a~~lAve~iN~~ggil~g~~l~l~~~D~~--~~~~~a~~~a~~li~~~v~aii-Gp~~S 101 (930)
.++||++.|-. ..+-.....|++-++++. |+++. +.++. .++..-.+....++.+++++|| .|..+
T Consensus 3 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~--~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~ 72 (297)
T 3rot_A 3 RDKYYLITHGSQDPYWTSLFQGAKKAAEEL--------KVDLQ--ILAPPGANDVPKQVQFIESALATYPSGIATTIPSD 72 (297)
T ss_dssp CCEEEEECSCCCSHHHHHHHHHHHHHHHHH--------TCEEE--EECCSSSCCHHHHHHHHHHHHHTCCSEEEECCCCS
T ss_pred eEEEEEEecCCCCchHHHHHHHHHHHHHHh--------CcEEE--EECCCCcCCHHHHHHHHHHHHHcCCCEEEEeCCCH
Confidence 47899999875 555667788888888874 45555 44544 6888888888899999998877 55555
Q ss_pred hhHHHHHHhhhcCCCcEEEeecCCCCCCCCCCCeEEEccCChHHHHHHHHHHHHHcC--CcEEEEEEec--CCcCcchHH
Q 002371 102 VMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFG--WGEVIAIFND--DDQGRNGVT 177 (930)
Q Consensus 102 ~~~~av~~~~~~~~vp~is~~a~~~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~~~--w~~vaii~~d--~~~g~~~~~ 177 (930)
.........+.+.++|+|......+... ..+.+.....++...+..+++++...| .++++++..+ ....+...+
T Consensus 73 ~~~~~~~~~~~~~giPvV~~~~~~~~~~--~~~~~~~V~~D~~~~g~~a~~~l~~~g~~~~~i~~i~g~~~~~~~~~R~~ 150 (297)
T 3rot_A 73 TAFSKSLQRANKLNIPVIAVDTRPKDKT--KNPYLVFLGSDNLLAGKKLGEKALELTPSAKRALVLNPQPGHIGLEKRAY 150 (297)
T ss_dssp STTHHHHHHHHHHTCCEEEESCCCSCTT--TSCCSCEEECCHHHHHHHHHHHHHHHCTTCCEEEEEESCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCEEEEcCCCcccc--ccCcceEEccChHHHHHHHHHHHHHhcCCCceEEEEeCCCCcHHHHHHHH
Confidence 5445566677788999998765443211 123445566788888899999988888 8999999754 333445678
Q ss_pred HHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcC--CceEEEEEcchhhHHHHHHHHHHcCCCCC
Q 002371 178 ALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGMMDS 246 (930)
Q Consensus 178 ~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~--~~~viv~~~~~~~~~~~~~~a~~~g~~~~ 246 (930)
.|.+++++.|+++.... . . .........+.++.+. ++++|+ +.+...+..+++++++.|+..+
T Consensus 151 Gf~~~l~~~g~~~~~~~--~-~--~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~A~g~~~al~~~g~~vP 215 (297)
T 3rot_A 151 GIKTILQDKGIFFEELD--V-G--TDPNQVQSRVKSYFKIHPETNIIF-CLTSQALDPLGQMLLHPDRYDF 215 (297)
T ss_dssp HHHHHHHHTTCEEEEEE--C-C--SCHHHHHHHHHHHHHHCTTCCEEE-ESSHHHHHHHHHHHHSHHHHTC
T ss_pred HHHHHHHhcCCeEEEee--c-C--CChHHHHHHHHHHHHhCCCCCEEE-EcCCcchHHHHHHHHhcCCccC
Confidence 99999999999987643 1 2 2245555566665443 456654 5566778889999999887533
No 86
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=98.46 E-value=8.4e-06 Score=86.38 Aligned_cols=197 Identities=12% Similarity=0.038 Sum_probs=131.1
Q ss_pred EEEeEEeec-CCCcchHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccCC-hhhH
Q 002371 27 LNVGAIFSF-GTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQS-AVMA 104 (930)
Q Consensus 27 I~IG~~~~l-~~~~G~~~~~a~~lAve~iN~~ggil~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~-S~~~ 104 (930)
.+||++.|. +..+......|++.++++. |+++ .+.|+..++....+....++.++|++||.... ....
T Consensus 3 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~--------g~~~--~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~ 72 (290)
T 2fn9_A 3 GKMAIVISTLNNPWFVVLAETAKQRAEQL--------GYEA--TIFDSQNDTAKESAHFDAIIAAGYDAIIFNPTDADGS 72 (290)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHT--------TCEE--EEEECTTCHHHHHHHHHHHHHTTCSEEEECCSCTTTT
T ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHHc--------CCEE--EEeCCCCCHHHHHHHHHHHHHcCCCEEEEecCChHHH
Confidence 579999986 3555566778888887762 5554 45677778888888888888889998886433 2222
Q ss_pred HHHHHhhhcCCCcEEEeecCCCCCCCCCCCeEEE-ccCChHHHHHHHHHHHHHc------CCcE--EEEEEec--CCcCc
Q 002371 105 HVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQ-TAPNDLYLMSAIAEMVSYF------GWGE--VIAIFND--DDQGR 173 (930)
Q Consensus 105 ~av~~~~~~~~vp~is~~a~~~~ls~~~~~~~fr-~~p~~~~~~~ai~~~l~~~------~w~~--vaii~~d--~~~g~ 173 (930)
......+.+.++|+|......+. . +++.. +..++...+..+++++... |.++ ++++... .....
T Consensus 73 ~~~~~~~~~~~iPvV~~~~~~~~---~--~~~~~~V~~D~~~~~~~~~~~L~~~~g~~~~G~r~i~i~~l~g~~~~~~~~ 147 (290)
T 2fn9_A 73 IANVKRAKEAGIPVFCVDRGINA---R--GLAVAQIYSDNYYGGVLAGEYFVKFLKEKYPDAKEIPYAELLGILSAQPTW 147 (290)
T ss_dssp HHHHHHHHHTTCCEEEESSCCSC---S--SSSSEEEEECHHHHHHHHHHHHHHHHHHHCSSCSCEEEEEEECCTTCHHHH
T ss_pred HHHHHHHHHCCCeEEEEecCCCC---C--CceEEEEeCCHHHHHHHHHHHHHHHhcccCCcccceeEEEEEcCCCCchHH
Confidence 23445566789999987543321 1 11222 5567777788888888776 8899 6666643 23445
Q ss_pred chHHHHHHHHHhc-CcEEEEEEecCCCCCCChhHHHHHHHHHhc--CCceEEEEEcchhhHHHHHHHHHHcCC
Q 002371 174 NGVTALGDKLAEI-RCKISYKSALPPDQSVTETDVRNELVKVRM--MEARVIVVHGYSRTGLMVFDVAQRLGM 243 (930)
Q Consensus 174 ~~~~~~~~~l~~~-g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~--~~~~viv~~~~~~~~~~~~~~a~~~g~ 243 (930)
...+.|.+++++. |+++.....-. .+..+....+.++.+ .++++|+ +.+...+..+++++++.|+
T Consensus 148 ~R~~gf~~~l~~~~g~~~~~~~~~~----~~~~~~~~~~~~ll~~~~~~~ai~-~~~d~~a~g~~~al~~~g~ 215 (290)
T 2fn9_A 148 DRSNGFHSVVDQYPEFKMVAQQSAE----FDRDTAYKVTEQILQAHPEIKAIW-CGNDAMALGAMKACEAAGR 215 (290)
T ss_dssp HHHHHHHHHHTTSTTEEEEEEEECT----TCHHHHHHHHHHHHHHCTTCCEEE-ESSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCCCEEEEeccCC----CCHHHHHHHHHHHHHhCCCCcEEE-ECCchHHHHHHHHHHHCCC
Confidence 6678899999998 88765422111 123444455555543 3577766 4566678889999999997
No 87
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=98.46 E-value=6.2e-06 Score=87.33 Aligned_cols=211 Identities=11% Similarity=0.007 Sum_probs=136.8
Q ss_pred ceEEEeEEeec-CCCcchHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccCChhh
Q 002371 25 EVLNVGAIFSF-GTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVM 103 (930)
Q Consensus 25 ~~I~IG~~~~l-~~~~G~~~~~a~~lAve~iN~~ggil~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~S~~ 103 (930)
...+||++.|- +..+......|++.++++. |+++.+ .++..++....+....++++++++||.......
T Consensus 6 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~--------g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~ 75 (289)
T 1dbq_A 6 HTKSIGLLATSSEAAYFAEIIEAVEKNCFQK--------GYTLIL--GNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEYP 75 (289)
T ss_dssp --CEEEEEESCTTSHHHHHHHHHHHHHHHHH--------TCEEEE--EECTTCHHHHHHHHHHHHHTTCSEEEEECSCCC
T ss_pred CCCEEEEEeCCCCChHHHHHHHHHHHHHHHc--------CCeEEE--EcCCCChHHHHHHHHHHHhCCCCEEEEEeccCC
Confidence 45689999985 3445566778888888774 565554 577778887777888888889988885332221
Q ss_pred HHHHHHhhhc-CCCcEEEeecCCCCCCCCCCCeEEEccCChHHHHHHHHHHHHHcCCcEEEEEEec--CCcCcchHHHHH
Q 002371 104 AHVLSHLANE-LQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFND--DDQGRNGVTALG 180 (930)
Q Consensus 104 ~~av~~~~~~-~~vp~is~~a~~~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~~~w~~vaii~~d--~~~g~~~~~~~~ 180 (930)
. .+.+.+.+ .++|+|......+. . ++...+..++...+..+++++...|.++++++..+ ....+...+.|.
T Consensus 76 ~-~~~~~l~~~~~iPvV~~~~~~~~---~--~~~~~V~~d~~~~~~~~~~~L~~~G~~~i~~i~~~~~~~~~~~R~~g~~ 149 (289)
T 1dbq_A 76 E-PLLAMLEEYRHIPMVVMDWGEAK---A--DFTDAVIDNAFEGGYMAGRYLIERGHREIGVIPGPLERNTGAGRLAGFM 149 (289)
T ss_dssp H-HHHHHHHHTTTSCEEEEECSSCC---S--SSCEEEEECHHHHHHHHHHHHHHTTCCSEEEECCC------CHHHHHHH
T ss_pred H-HHHHHHHhccCCCEEEEccCCCc---c--CcCCEEEeCcHHHHHHHHHHHHHCCCCeEEEEecCCccccHHHHHHHHH
Confidence 1 23334444 79999987654321 1 22334556777778889999888899999999754 345677889999
Q ss_pred HHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhc--CCceEEEEEcchhhHHHHHHHHHHcCCCCCc-eEEEEeC
Q 002371 181 DKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRM--MEARVIVVHGYSRTGLMVFDVAQRLGMMDSG-YVWIATT 254 (930)
Q Consensus 181 ~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~--~~~~viv~~~~~~~~~~~~~~a~~~g~~~~~-~~~i~~~ 254 (930)
+++++.|+++.....+... .+..+....+.++.+ .++++|+. .+...+..+++++++.|+..++ ...++.+
T Consensus 150 ~~l~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~a~g~~~al~~~G~~vP~di~vvg~d 223 (289)
T 1dbq_A 150 KAMEEAMIKVPESWIVQGD--FEPESGYRAMQQILSQPHRPTAVFC-GGDIMAMGALCAADEMGLRVPQDVSLIGYD 223 (289)
T ss_dssp HHHHHTTCCCCGGGBCCCC--SSHHHHHHHHHHHHTSSSCCSEEEE-SCHHHHHHHHHHHHHTTCCTTTTCEEEEEE
T ss_pred HHHHHCCCCCChHHeEeCC--CCHHHHHHHHHHHHhCCCCCCEEEE-CCcHHHHHHHHHHHHcCCCCCCceEEEeeC
Confidence 9999999765321112211 224444555666655 35777664 4567788899999999986443 3334433
No 88
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=98.44 E-value=1.2e-06 Score=93.06 Aligned_cols=202 Identities=7% Similarity=-0.087 Sum_probs=131.4
Q ss_pred CceEEEeEEeecCCCcchHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccCChhh
Q 002371 24 PEVLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVM 103 (930)
Q Consensus 24 ~~~I~IG~~~~l~~~~G~~~~~a~~lAve~iN~~ggil~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~S~~ 103 (930)
....+||++.|.+..+......|++.++++. |+++. +.++..++.........+++++|++||....+..
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~~~gi~~~~~~~--------g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~ 75 (288)
T 2qu7_A 6 GRSNIIAFIVPDQNPFFTEVLTEISHECQKH--------HLHVA--VASSEENEDKQQDLIETFVSQNVSAIILVPVKSK 75 (288)
T ss_dssp -CEEEEEEEESSCCHHHHHHHHHHHHHHGGG--------TCEEE--EEECTTCHHHHHHHHHHHHHTTEEEEEECCSSSC
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHHHHHHC--------CCEEE--EEeCCCCHHHHHHHHHHHHHcCccEEEEecCCCC
Confidence 4567899999873333445566666666542 56554 4577778887777888888889999987544322
Q ss_pred HHHHHHhhhcCCCcEEEeecCCCCCCCCCCCeEEEccCChHHHHHHHHHHHHHcCCcEEEEEEec--CCcCcchHHHHHH
Q 002371 104 AHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFND--DDQGRNGVTALGD 181 (930)
Q Consensus 104 ~~av~~~~~~~~vp~is~~a~~~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~~~w~~vaii~~d--~~~g~~~~~~~~~ 181 (930)
...+..+ .++|+|......+. +.+..+..++...+..+++++...|.++++++... ........+.|.+
T Consensus 76 ~~~~~~l---~~iPvV~~~~~~~~------~~~~~V~~d~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~gf~~ 146 (288)
T 2qu7_A 76 FQMKREW---LKIPIMTLDRELES------TSLPSITVDNEEAAYIATKRVLESTCKEVGLLLANPNISTTIGRKNGYNK 146 (288)
T ss_dssp CCCCGGG---GGSCEEEESCCCSS------CCCCEEEECHHHHHHHHHHHHHTSSCCCEEEEECCTTSHHHHHHHHHHHH
T ss_pred hHHHHHh---cCCCEEEEecccCC------CCCCEEEECcHHHHHHHHHHHHHcCCCcEEEEecCCCCCCHHHHHHHHHH
Confidence 2222222 78999987543321 22345566777788889999888999999999854 3345566789999
Q ss_pred HHHhcCcEEEEEEec--CCCCCC----ChhHHHHHHHHHhcCCceEEEEEcchhhHHHHHHHHHHcCCCCCc
Q 002371 182 KLAEIRCKISYKSAL--PPDQSV----TETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSG 247 (930)
Q Consensus 182 ~l~~~g~~i~~~~~~--~~~~~~----~~~d~~~~l~~l~~~~~~viv~~~~~~~~~~~~~~a~~~g~~~~~ 247 (930)
++++.|+++.....+ ... . +..+-...+.++.+.++++|+. .+...+..+++++++.|+..++
T Consensus 147 ~l~~~g~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~ai~~-~~d~~a~g~~~al~~~g~~vP~ 215 (288)
T 2qu7_A 147 AISEFDLNVNPSLIHYSDQQ--LGTNAQIYSGYEATKTLLSKGIKGIVA-TNHLLLLGALQAIKESEKEIKK 215 (288)
T ss_dssp HHHHTTCCCCGGGEEECCSS--CSHHHHHHHHHHHHHHHHHTTCCEEEE-CSHHHHHHHHHHHHHSSCCBTT
T ss_pred HHHHcCCCCCcceEEeccCC--ccccCCHHHHHHHHHHHHhcCCCEEEE-CCcHHHHHHHHHHHHhCCCCCC
Confidence 999999765321111 111 1 1233334445544448888765 4566778889999999986443
No 89
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=98.37 E-value=1.5e-05 Score=86.04 Aligned_cols=210 Identities=7% Similarity=0.047 Sum_probs=133.8
Q ss_pred ceEEEeEEeecCCCcchHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccCChhhH
Q 002371 25 EVLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVMA 104 (930)
Q Consensus 25 ~~I~IG~~~~l~~~~G~~~~~a~~lAve~iN~~ggil~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~S~~~ 104 (930)
...+||++.|.+..+-.....|++.++++ .+ |+++ .+.++..++.........+++++|++||....+...
T Consensus 5 ~~~~Igvi~~~~~~~~~~~~~gi~~~a~~---~~----g~~l--~i~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~ 75 (325)
T 2x7x_A 5 PHFRIGVAQCSDDSWRHKMNDEILREAMF---YN----GVSV--EIRSAGDDNSKQAEDVHYFMDEGVDLLIISANEAAP 75 (325)
T ss_dssp -CCEEEEEESCCSHHHHHHHHHHHHHHTT---SS----SCEE--EEEECTTCHHHHHHHHHHHHHTTCSEEEECCSSHHH
T ss_pred CCeEEEEEecCCCHHHHHHHHHHHHHHHH---cC----CcEE--EEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCHHH
Confidence 46789999987332333344555554432 21 4544 456777788887888888888899998875444322
Q ss_pred -HHHHHhhhcCCCcEEEeecCCCCCCCCCCCeEEEccCChHHHHHHHHHHHHHc--CCcEEEEEEecC--CcCcchHHHH
Q 002371 105 -HVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYF--GWGEVIAIFNDD--DQGRNGVTAL 179 (930)
Q Consensus 105 -~av~~~~~~~~vp~is~~a~~~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~~--~w~~vaii~~d~--~~g~~~~~~~ 179 (930)
......+...++|+|......+ +. +.+.....++...+..+++++... |.++++++..+. .......+.|
T Consensus 76 ~~~~~~~~~~~~iPvV~~~~~~~---~~--~~~~~V~~D~~~~g~~a~~~L~~~~~G~~~I~~i~~~~~~~~~~~R~~Gf 150 (325)
T 2x7x_A 76 MTPIVEEAYQKGIPVILVDRKIL---SD--KYTAYIGADNYEIGRSVGNYIASSLKGKGNIVELTGLSGSTPAMERHQGF 150 (325)
T ss_dssp HHHHHHHHHHTTCCEEEESSCCS---SS--CSSEEEEECHHHHHHHHHHHHHHHTTTEEEEEEEESCTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCeEEEeCCCCC---Cc--ceeEEEecCHHHHHHHHHHHHHHHcCCCceEEEEECCCCCccHHHHHHHH
Confidence 3344556678999998754322 11 223445567777788888887775 999999998542 3345567889
Q ss_pred HHHHHhc-CcEEEEEEecCCCCCCChhHHHHHHHHHhc--CCceEEEEEcchhhHHHHHHHHHHcCCCCCceEEEEeC
Q 002371 180 GDKLAEI-RCKISYKSALPPDQSVTETDVRNELVKVRM--MEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATT 254 (930)
Q Consensus 180 ~~~l~~~-g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~--~~~~viv~~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~ 254 (930)
.+++++. |+++..... .. .+..+....+.++.+ .++++|+ +.+...+..+++++++.|+ +.+...++.|
T Consensus 151 ~~al~~~pg~~~~~~~~--~~--~~~~~~~~~~~~ll~~~~~~~aI~-~~nd~~A~g~~~al~~~Gi-p~dv~vig~D 222 (325)
T 2x7x_A 151 MAAISKFPDIKLIDKAD--AA--WERGPAEIEMDSMLRRHPKIDAVY-AHNDRIAPGAYQAAKMAGR-EKEMIFVGID 222 (325)
T ss_dssp HHHHHTCTEEEEEEEEE--CT--TSHHHHHHHHHHHHHHCSCCCEEE-ESSTTHHHHHHHHHHHTTC-TTSSEEEEEE
T ss_pred HHHHHhCCCCEEEeeec--CC--CCHHHHHHHHHHHHHhCCCCCEEE-ECCCchHHHHHHHHHHcCC-CCCeEEEEEC
Confidence 9999998 887754221 11 123444445555543 3577766 4556678888999999996 3344445544
No 90
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=98.36 E-value=1.1e-05 Score=85.43 Aligned_cols=209 Identities=13% Similarity=0.014 Sum_probs=141.6
Q ss_pred ceEEEeEEeecC-CCcchHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEE-ccCChh
Q 002371 25 EVLNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIV-GPQSAV 102 (930)
Q Consensus 25 ~~I~IG~~~~l~-~~~G~~~~~a~~lAve~iN~~ggil~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aii-Gp~~S~ 102 (930)
..-+||++.|-. ..+-.....+++-++++. |+++ .+.++..++..-......++.+++++|| .|..+.
T Consensus 4 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~--------g~~~--~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~ 73 (291)
T 3l49_A 4 EGKTIGITAIGTDHDWDLKAYQAQIAEIERL--------GGTA--IALDAGRNDQTQVSQIQTLIAQKPDAIIEQLGNLD 73 (291)
T ss_dssp TTCEEEEEESCCSSHHHHHHHHHHHHHHHHT--------TCEE--EEEECTTCHHHHHHHHHHHHHHCCSEEEEESSCHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHHHc--------CCEE--EEEcCCCCHHHHHHHHHHHHHcCCCEEEEeCCChh
Confidence 356899999964 334445677777777763 4544 4557777888888888888888998888 566655
Q ss_pred hHHHHHHhhhcCCCcEEEeecCCCCCCCCCCCeEEEccCChHHHHHHHHHHHHH--cCCcEEEEEEecC--CcCcchHHH
Q 002371 103 MAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSY--FGWGEVIAIFNDD--DQGRNGVTA 178 (930)
Q Consensus 103 ~~~av~~~~~~~~vp~is~~a~~~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~--~~w~~vaii~~d~--~~g~~~~~~ 178 (930)
........+.+.++|+|......+ . .+.....++...+..+++++.. .|.++++++..+. .......+.
T Consensus 74 ~~~~~~~~~~~~~iPvV~~~~~~~----~---~~~~V~~D~~~~g~~~~~~l~~~~~g~~~i~~i~~~~~~~~~~~R~~g 146 (291)
T 3l49_A 74 VLNPWLQKINDAGIPLFTVDTATP----H---AINNTTSNNYSIGAELALQMVADLGGKGNVLVFNGFYSVPVCKIRYDQ 146 (291)
T ss_dssp HHHHHHHHHHHTTCCEEEESCCCT----T---CSEEEEECHHHHHHHHHHHHHHHHTTCEEEEEECSCTTSHHHHHHHHH
T ss_pred hhHHHHHHHHHCCCcEEEecCCCC----C---cCceEecChHHHHHHHHHHHHHHcCCCceEEEEeCCCCCchHHHHHHH
Confidence 566667778888999998755432 1 2334556777778889999888 8999999997432 233445788
Q ss_pred HHHHHHhc-CcEEEEEEecCCCCCCChhHHHHHHHHHhcC-----CceEEEEEcchhhHHHHHHHHHHcCCCCCceEEEE
Q 002371 179 LGDKLAEI-RCKISYKSALPPDQSVTETDVRNELVKVRMM-----EARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIA 252 (930)
Q Consensus 179 ~~~~l~~~-g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~-----~~~viv~~~~~~~~~~~~~~a~~~g~~~~~~~~i~ 252 (930)
|.+++++. |++++....+..+ ..+.+.....+.++.+. ++++| ++.+...+..+++++++.|+. +...++
T Consensus 147 f~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~ai-~~~~d~~a~g~~~al~~~g~~--di~vvg 222 (291)
T 3l49_A 147 MKYVLEAFPDVKIIEPELRDVI-PNTIQSAYSNVTDMLTKYPNEGDVGAI-WACWDVPMIGATQALQAAGRT--DIRTYG 222 (291)
T ss_dssp HHHHHHTCTTEEECSSCBCCCS-SSHHHHHHHHHHHHHHHCCSTTSCCEE-EESSHHHHHHHHHHHHHTTCC--SCEEEE
T ss_pred HHHHHHHCCCCEEEeeeccCCC-CCCHHHHHHHHHHHHHhCCCcCCcCEE-EECCCchHHHHHHHHHHcCCC--CeEEEE
Confidence 99999998 6776543333222 01233344455555443 56776 456777888899999999985 434444
Q ss_pred eC
Q 002371 253 TT 254 (930)
Q Consensus 253 ~~ 254 (930)
.|
T Consensus 223 ~d 224 (291)
T 3l49_A 223 VD 224 (291)
T ss_dssp EE
T ss_pred ec
Confidence 43
No 91
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=98.35 E-value=7.9e-06 Score=87.21 Aligned_cols=205 Identities=9% Similarity=-0.066 Sum_probs=136.8
Q ss_pred ceEEEeEEeecC-CCcchHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEE-ccCChh
Q 002371 25 EVLNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIV-GPQSAV 102 (930)
Q Consensus 25 ~~I~IG~~~~l~-~~~G~~~~~a~~lAve~iN~~ggil~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aii-Gp~~S~ 102 (930)
.+.+||+++|-. ..+-.....+++-+.++. |+++.+...+...++....+....++++++++|| .|..+.
T Consensus 4 ~~~~Igvi~~~~~~~~~~~~~~g~~~~a~~~--------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~ 75 (304)
T 3o1i_D 4 SDEKICAIYPHLKDSYWLSVNYGMVSEAEKQ--------GVNLRVLEAGGYPNKSRQEQQLALCTQWGANAIILGTVDPH 75 (304)
T ss_dssp -CCEEEEEESCSCSHHHHHHHHHHHHHHHHH--------TCEEEEEECSSTTCHHHHHHHHHHHHHHTCSEEEECCSSTT
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHHc--------CCeEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChh
Confidence 467899999864 444456677777777764 5665554444333888888888899988888887 444443
Q ss_pred hHHHHHHhhhcCCCcEEEeecCCCCCCCCCCCeEEEccCChHHHHHHHHHHHHHcC-----CcEEEEEEec--CCcCcch
Q 002371 103 MAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFG-----WGEVIAIFND--DDQGRNG 175 (930)
Q Consensus 103 ~~~av~~~~~~~~vp~is~~a~~~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~~~-----w~~vaii~~d--~~~g~~~ 175 (930)
........+. .++|+|......+.......+.+.....++...+..+++++...| .++++++... .......
T Consensus 76 ~~~~~~~~~~-~~iPvV~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~l~~~g~~~~~~~~i~~i~~~~~~~~~~~R 154 (304)
T 3o1i_D 76 AYEHNLKSWV-GNTPVFATVNQLDLDEEQSTLLKGEVGVDWYWMGYEAGKYLAERHPKGSGKTNIALLLGPRTRGGTKPV 154 (304)
T ss_dssp SSTTTHHHHT-TTSCEEECSSCCCCCTTTGGGEEEECCCCHHHHHHHHHHHHHTTSBTTTCCEEEEEECCCC-----CHH
T ss_pred HHHHHHHHHc-CCCCEEEecCCCcccccCCCceEEEEecCHHHHHHHHHHHHHHhcccCCCCCEEEEEECCCCcchHHHH
Confidence 2223344455 899999875443222222335667778888888899999999988 8999999754 3345667
Q ss_pred HHHHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHh-cCCceEEEEEcchhhHHHHHHHHHHcCCC
Q 002371 176 VTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVR-MMEARVIVVHGYSRTGLMVFDVAQRLGMM 244 (930)
Q Consensus 176 ~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~-~~~~~viv~~~~~~~~~~~~~~a~~~g~~ 244 (930)
.+.|.+++++.|+++.... ... .+.......+.++. ..++++ | +++...+..+++++++.|+.
T Consensus 155 ~~gf~~~l~~~~~~~~~~~--~~~--~~~~~~~~~~~~~l~~~~~~a-i-~~~d~~a~g~~~al~~~g~~ 218 (304)
T 3o1i_D 155 TTGFYEAIKNSDIHIVDSF--WAD--NDKELQRNLVQRVIDMGNIDY-I-VGSAVAIEAAISELRSADKT 218 (304)
T ss_dssp HHHHHHTTTTBTEEEEECC--CCC--SCHHHHHHHHHHHHHHSCCSE-E-EECHHHHHHHHHHHTTTTCG
T ss_pred HHHHHHHHhcCCCEEEEee--cCC--CcHHHHHHHHHHHHcCCCCCE-E-EecCcchHHHHHHHHhcCCC
Confidence 8999999999998877532 222 22344334444433 346788 4 55777888999999999975
No 92
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=98.34 E-value=2.4e-05 Score=83.60 Aligned_cols=212 Identities=9% Similarity=0.026 Sum_probs=136.0
Q ss_pred eEEEeEEeecC-CCcchHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccCChhh-
Q 002371 26 VLNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVM- 103 (930)
Q Consensus 26 ~I~IG~~~~l~-~~~G~~~~~a~~lAve~iN~~ggil~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~S~~- 103 (930)
+++||++.|.. ..+......|++-++++. |+++. +.++..++....+....+++++|++||-...+..
T Consensus 2 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~--------g~~l~--~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~ 71 (306)
T 2vk2_A 2 PLTVGFSQVGSESGWRAAETNVAKSEAEKR--------GITLK--IADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATG 71 (306)
T ss_dssp CCEEEEEECCCCSHHHHHHHHHHHHHHHHH--------TCEEE--EEECTTCHHHHHHHHHHHHHHTCSEEEECCSSSSS
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHHHc--------CCEEE--EeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhh
Confidence 57999999974 445556677888777764 45554 4577778877777788888889998886433322
Q ss_pred HHHHHHhhhcCCCcEEEeecCCCCCCCCCCCeEEEccCChHHHHHHHHHHHHHcC---CcEEEEEEecC--CcCcchHHH
Q 002371 104 AHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFG---WGEVIAIFNDD--DQGRNGVTA 178 (930)
Q Consensus 104 ~~av~~~~~~~~vp~is~~a~~~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~~~---w~~vaii~~d~--~~g~~~~~~ 178 (930)
.......+...++|+|......+.. ...+++.....++...+..+++++...| .++++++.... .......+.
T Consensus 72 ~~~~~~~~~~~~iPvV~~~~~~~~~--~~~~~~~~V~~D~~~~g~~a~~~L~~~g~g~~~~I~~i~~~~~~~~~~~R~~G 149 (306)
T 2vk2_A 72 WEPVLKEAKDAEIPVFLLDRSIDVK--DKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKG 149 (306)
T ss_dssp CHHHHHHHHHTTCCEEEESSCCCCS--CGGGSSEEEECCHHHHHHHHHHHHHHHHTTSCEEEEEEECSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCEEEecCCCCCC--CccceEEEEecCHHHHHHHHHHHHHHhcCCCCCeEEEEEcCCCChhHHHHHHH
Confidence 1233445567899999875433211 1111344566777777888888887776 79999998542 334556788
Q ss_pred HHHHHHhcCc-EEEEEEecCCCCCCChhHHHHHHHHHhc-----CCceEEEEEcchhhHHHHHHHHHHcCCCCCc-eEEE
Q 002371 179 LGDKLAEIRC-KISYKSALPPDQSVTETDVRNELVKVRM-----MEARVIVVHGYSRTGLMVFDVAQRLGMMDSG-YVWI 251 (930)
Q Consensus 179 ~~~~l~~~g~-~i~~~~~~~~~~~~~~~d~~~~l~~l~~-----~~~~viv~~~~~~~~~~~~~~a~~~g~~~~~-~~~i 251 (930)
|.+++++.|. ++.... ... .+..+....+.++.+ .++++|+. .+...+..+++++++.|+..++ ...+
T Consensus 150 f~~al~~~g~~~~~~~~--~~~--~~~~~~~~~~~~ll~~~~~~~~~~ai~~-~nd~~A~g~~~al~~~G~~vP~di~vi 224 (306)
T 2vk2_A 150 FAEAIKNAPNIKIIRSQ--SGD--FTRSKGKEVMESFIKAENNGKNICMVYA-HNDDMVIGAIQAIKEAGLKPGKDILTG 224 (306)
T ss_dssp HHHHTTTCTTEEEEEEE--ECT--TCHHHHHHHHHHHHHHTTTTTTCCEEEE-SSHHHHHHHHHHHHHTTCCBTTTBEEE
T ss_pred HHHHHhhCCCeEEEEec--cCC--CcHHHHHHHHHHHHHhCCCCCCeeEEEE-CCchHHHHHHHHHHHcCCCCCCCeEEE
Confidence 9999999885 433221 111 123443444555543 35777654 5566788899999999986543 3344
Q ss_pred EeC
Q 002371 252 ATT 254 (930)
Q Consensus 252 ~~~ 254 (930)
+.|
T Consensus 225 g~D 227 (306)
T 2vk2_A 225 SID 227 (306)
T ss_dssp EEE
T ss_pred eec
Confidence 433
No 93
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=98.34 E-value=2.2e-05 Score=84.00 Aligned_cols=204 Identities=9% Similarity=0.010 Sum_probs=134.3
Q ss_pred EEEeEEeec-CCCcchHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccC-ChhhH
Q 002371 27 LNVGAIFSF-GTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQ-SAVMA 104 (930)
Q Consensus 27 I~IG~~~~l-~~~~G~~~~~a~~lAve~iN~~ggil~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~-~S~~~ 104 (930)
-+||++.|- +..+......|++.++++. |+ +++.+.++..++.........++++++++||-.. .....
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~-~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~ 73 (309)
T 2fvy_A 3 TRIGVTIYKYDDNFMSVVRKAIEQDAKAA--------PD-VQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAA 73 (309)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHHHHTC--------TT-EEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSSGGGH
T ss_pred cEEEEEeccCCcHHHHHHHHHHHHHHHhc--------CC-eEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeCCCcchh
Confidence 479999985 3444445566666666652 44 3455667777888878888888888998888643 33333
Q ss_pred HHHHHhhhcCCCcEEEeecCCCCCCCCCCCeEEEccCChHHHHHHHHHHHHH------------cCCcEEEEEEec--CC
Q 002371 105 HVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSY------------FGWGEVIAIFND--DD 170 (930)
Q Consensus 105 ~av~~~~~~~~vp~is~~a~~~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~------------~~w~~vaii~~d--~~ 170 (930)
......+.+.++|+|......+...-..++.+.....++...+..+++++.. .|.++++++... ..
T Consensus 74 ~~~~~~~~~~~iPvV~~~~~~~~~~~~~~~~~~~V~~d~~~~g~~~~~~L~~~~~~~~~~~~~g~g~~~i~~i~~~~~~~ 153 (309)
T 2fvy_A 74 GTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHP 153 (309)
T ss_dssp HHHHHHHHTTTCCEEEESSCCCHHHHHTCTTEEEEECCHHHHHHHHHHHHHHHHHHCGGGCTTCSSSEEEEEEECSTTCH
T ss_pred HHHHHHHHHCCCcEEEecCCCCcccccccCccEEEecCHHHHHHHHHHHHHHHHhhcccccccCCCceEEEEEEcCCCCc
Confidence 3445566778999998754321100011345666778888888888888776 688899999854 33
Q ss_pred cCcchHHHHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcC----CceEEEEEcchhhHHHHHHHHHHcC
Q 002371 171 QGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMM----EARVIVVHGYSRTGLMVFDVAQRLG 242 (930)
Q Consensus 171 ~g~~~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~----~~~viv~~~~~~~~~~~~~~a~~~g 242 (930)
......+.|.+++++.|+.+.....+... .+..+....+.++.+. ++++|+. .+...+..+++++++.|
T Consensus 154 ~~~~R~~gf~~~l~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~ai~~-~~d~~a~g~~~al~~~g 226 (309)
T 2fvy_A 154 DAEARTTYVIKELNDKGIKTEQLQLDTAM--WDTAQAKDKMDAWLSGPNANKIEVVIA-NNDAMAMGAVEALKAHN 226 (309)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEEEEECT--TCHHHHHHHHHHHHTSTTGGGCCEEEE-SSHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHhcCCceEEEEEecCC--CCHHHHHHHHHHHHHhCCCCCccEEEE-CCchhHHHHHHHHHHcC
Confidence 44566788999999999876433222222 2244445556666544 5677654 55667888999999988
No 94
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=98.33 E-value=2e-05 Score=83.28 Aligned_cols=202 Identities=9% Similarity=-0.028 Sum_probs=132.2
Q ss_pred ceEEEeEEeec-CCCcchHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccCChhh
Q 002371 25 EVLNVGAIFSF-GTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVM 103 (930)
Q Consensus 25 ~~I~IG~~~~l-~~~~G~~~~~a~~lAve~iN~~ggil~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~S~~ 103 (930)
..-+||++.|- +..+......|++-++++. |+++.+ .++..++.........+++++|++||.......
T Consensus 7 ~~~~Igvi~~~~~~~~~~~~~~gi~~~~~~~--------g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~ 76 (285)
T 3c3k_A 7 KTGMLLVMVSNIANPFCAAVVKGIEKTAEKN--------GYRILL--CNTESDLARSRSCLTLLSGKMVDGVITMDALSE 76 (285)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHHHHHHHHT--------TCEEEE--EECTTCHHHHHHHTHHHHTTCCSEEEECCCGGG
T ss_pred CCCEEEEEeCCCCCchHHHHHHHHHHHHHHc--------CCEEEE--EeCCCCHHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence 45689999985 3445556677777777662 566554 566667777677777888889999886443322
Q ss_pred HHHHHHhhhcCCCcEEEeecCCCCCCCCCCCeEEEccCChHHHHHHHHHHHHHcCCcEEEEEEecC--CcCcchHHHHHH
Q 002371 104 AHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDD--DQGRNGVTALGD 181 (930)
Q Consensus 104 ~~av~~~~~~~~vp~is~~a~~~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~~~w~~vaii~~d~--~~g~~~~~~~~~ 181 (930)
...+ ..+. .++|+|......+ +.. +..+..++...+..+++++...|.++++++.... .......+.|.+
T Consensus 77 ~~~~-~~l~-~~iPvV~~~~~~~---~~~---~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~gf~~ 148 (285)
T 3c3k_A 77 LPEL-QNII-GAFPWVQCAEYDP---LST---VSSVSIDDVAASEYVVDQLVKSGKKRIALINHDLAYQYAQHRESGYLN 148 (285)
T ss_dssp HHHH-HHHH-TTSSEEEESSCCT---TSS---SCEEECCHHHHHHHHHHHHHHTTCCCEEEEECCTTSHHHHHHHHHHHH
T ss_pred hHHH-HHHh-cCCCEEEEccccC---CCC---CCEEEEChHHHHHHHHHHHHHcCCCeEEEEeCCCccccHHHHHHHHHH
Confidence 2223 3345 8999998754322 122 2334567777778888988888999999998653 334556788999
Q ss_pred HHHhcCcEEE-EEEecCCCCCCChhHHHHHHHH--HhcC--CceEEEEEcchhhHHHHHHHHHHcCCCCCceEEE
Q 002371 182 KLAEIRCKIS-YKSALPPDQSVTETDVRNELVK--VRMM--EARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWI 251 (930)
Q Consensus 182 ~l~~~g~~i~-~~~~~~~~~~~~~~d~~~~l~~--l~~~--~~~viv~~~~~~~~~~~~~~a~~~g~~~~~~~~i 251 (930)
++++.|+++. ....+ . ..+....+.+ +.+. ++++|+ +.+...+..+++++++.|+..++-+-+
T Consensus 149 ~l~~~g~~~~~~~~~~--~----~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~A~g~~~al~~~g~~vP~di~v 216 (285)
T 3c3k_A 149 RLKFHGLDYSRISYAE--N----LDYMAGKLATFSLLKSAVKPDAIF-AISDVLAAGAIQALTESGLSIPQDVAV 216 (285)
T ss_dssp HHHHHTCCCCEEEECS--S----SSHHHHHHHHHHHHSSSSCCSEEE-ESSHHHHHHHHHHHHHTTCCTTTTCEE
T ss_pred HHHHcCCCceEeecCC--C----hHHHHHHHHHHHHHcCCCCCeEEE-ECCHHHHHHHHHHHHHcCCCCCCceEE
Confidence 9999998654 11111 1 2333445566 5443 577766 456667888999999999865443333
No 95
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=98.32 E-value=2e-05 Score=83.92 Aligned_cols=191 Identities=16% Similarity=0.154 Sum_probs=127.6
Q ss_pred CCCceEEEeEEeecCCCcchHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccCCh
Q 002371 22 LKPEVLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSA 101 (930)
Q Consensus 22 ~~~~~I~IG~~~~l~~~~G~~~~~a~~lAve~iN~~ggil~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~S 101 (930)
..+.++|||++.-..-+.-...+.|++ +++++.|.. .|..+++.+.|.++|+..+...+++|+++++++||+- .+
T Consensus 4 ~~~~~~~igi~q~~~hp~ld~~~~G~~---~~L~~~G~~-~g~nv~~~~~~a~gd~~~~~~~~~~l~~~~~DlIiai-~t 78 (302)
T 3lkv_A 4 IMAKTAKVAVSQIVEHPALDATRQGLL---DGLKAKGYE-EGKNLEFDYKTAQGNPAIAVQIARQFVGENPDVLVGI-AT 78 (302)
T ss_dssp ---CCEEEEEEESCCCHHHHHHHHHHH---HHHHHTTCC-BTTTEEEEEEECTTCHHHHHHHHHHHHTTCCSEEEEE-SH
T ss_pred hhcCCceEEEEEeecChhHHHHHHHHH---HHHHhhCcc-cCCcEEEEEEeCCCCHHHHHHHHHHHHhcCCcEEEEc-CC
Confidence 345789999987554222234455554 456667766 4899999999999999999999999999999999973 34
Q ss_pred hhHHHHHHhhhcCCCcEEEeecCCCCCCC----C--CCCeEEEccCChHHHHHHHHHHHHHc--CCcEEEEEEecCCc-C
Q 002371 102 VMAHVLSHLANELQVPLLSFTALDPTLSP----L--QYPFFVQTAPNDLYLMSAIAEMVSYF--GWGEVIAIFNDDDQ-G 172 (930)
Q Consensus 102 ~~~~av~~~~~~~~vp~is~~a~~~~ls~----~--~~~~~fr~~p~~~~~~~ai~~~l~~~--~w~~vaii~~d~~~-g 172 (930)
..+.+++. ...++|++-.+.++|.-.. . .-+++..+. +........++++++ +.++|+++|...+- .
T Consensus 79 ~aa~a~~~--~~~~iPVVf~~v~dp~~~~l~~~~~~~g~nvtGv~--~~~~~~~~l~l~~~l~P~~k~vgvi~~~~~~~s 154 (302)
T 3lkv_A 79 PTAQALVS--ATKTIPIVFTAVTDPVGAKLVKQLEQPGKNVTGLS--DLSPVEQHVELIKEILPNVKSIGVVYNPGEANA 154 (302)
T ss_dssp HHHHHHHH--HCSSSCEEEEEESCTTTTTSCSCSSSCCSSEEEEE--CCCCHHHHHHHHHHHSTTCCEEEEEECTTCHHH
T ss_pred HHHHHHHh--hcCCCCeEEEecCCcchhhhcccccCCCCcEEEEE--CCcCHHHHHHHHHHhCCCCCEEEEEeCCCcccH
Confidence 44555544 3457999977777775432 1 124454443 222234455666553 68999999975433 3
Q ss_pred cchHHHHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCCceEEEEEcch
Q 002371 173 RNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS 228 (930)
Q Consensus 173 ~~~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~ 228 (930)
....+.+++.+++.|++++..... +..++...++.+. .+.|++++....
T Consensus 155 ~~~~~~~~~~~~~~g~~~v~~~~~------~~~~~~~~~~~l~-~~~d~i~~~~d~ 203 (302)
T 3lkv_A 155 VSLMELLKLSAAKHGIKLVEATAL------KSADVQSATQAIA-EKSDVIYALIDN 203 (302)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECS------SGGGHHHHHHHHH-TTCSEEEECSCH
T ss_pred HHHHHHHHHHHHHcCCEEEEEecC------ChHHHHHHHHhcc-CCeeEEEEeCCc
Confidence 456788899999999998754322 2456777777665 568888887654
No 96
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=98.32 E-value=1.9e-05 Score=84.16 Aligned_cols=212 Identities=9% Similarity=0.010 Sum_probs=137.6
Q ss_pred CCceEEEeEEeecC--CCcchHHHHHHHHHHHHHhcCCCCCCCcEEEEEEe-cCCCChHHHHHHHHHHHhcCcEEEEc-c
Q 002371 23 KPEVLNVGAIFSFG--TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMH-DAKFNGFLSIMGALQFMETDTLAIVG-P 98 (930)
Q Consensus 23 ~~~~I~IG~~~~l~--~~~G~~~~~a~~lAve~iN~~ggil~g~~l~l~~~-D~~~~~~~a~~~a~~li~~~v~aiiG-p 98 (930)
....-+||+++|-. ..+-.....+++-++++. +|+.+.+... ++..++..-......++++++++||- |
T Consensus 5 ~~~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~-------~g~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~ 77 (304)
T 3gbv_A 5 SNKKYTFACLLPKHLEGEYWTDVQKGIREAVTTY-------SDFNISANITHYDPYDYNSFVATSQAVIEEQPDGVMFAP 77 (304)
T ss_dssp --CCEEEEEEEECCCTTSHHHHHHHHHHHHHHHT-------GGGCEEEEEEEECSSCHHHHHHHHHHHHTTCCSEEEECC
T ss_pred cCCcceEEEEecCCCCchHHHHHHHHHHHHHHHH-------HhCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEECC
Confidence 34578999999984 555556677777777763 1566777665 45567777777788888888888874 4
Q ss_pred CChhhHHHHHHhhhcCCCcEEEeecCCCCCCCCCCCeEEEccCChHHHHHHHHHHHHHcCC--cEEEEEEec------CC
Q 002371 99 QSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGW--GEVIAIFND------DD 170 (930)
Q Consensus 99 ~~S~~~~av~~~~~~~~vp~is~~a~~~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~~~w--~~vaii~~d------~~ 170 (930)
..+.........+.+.++|+|......+.. +.+-....++...+..+++++...|. ++++++..+ ..
T Consensus 78 ~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~-----~~~~~V~~D~~~~g~~a~~~l~~~g~~~~~i~~i~~~~~g~~~~~ 152 (304)
T 3gbv_A 78 TVPQYTKGFTDALNELGIPYIYIDSQIKDA-----PPLAFFGQNSHQSGYFAARMLMLLAVNDREIVIFRKIHEGVIGSN 152 (304)
T ss_dssp SSGGGTHHHHHHHHHHTCCEEEESSCCTTS-----CCSEEEECCHHHHHHHHHHHHHHHSTTCSEEEEEEEEBTTBCCCH
T ss_pred CChHHHHHHHHHHHHCCCeEEEEeCCCCCC-----CceEEEecChHHHHHHHHHHHHHHhCCCCeEEEEEecccCCccch
Confidence 434334445566677799999876543211 12344557778888889999988888 999999832 23
Q ss_pred cCcchHHHHHHHHHhcCcEE--EEEEecCCCCCCChhHHHHHHHHHhc--CCceEEEEEcchhhHHHHHHHHHHcCCCCC
Q 002371 171 QGRNGVTALGDKLAEIRCKI--SYKSALPPDQSVTETDVRNELVKVRM--MEARVIVVHGYSRTGLMVFDVAQRLGMMDS 246 (930)
Q Consensus 171 ~g~~~~~~~~~~l~~~g~~i--~~~~~~~~~~~~~~~d~~~~l~~l~~--~~~~viv~~~~~~~~~~~~~~a~~~g~~~~ 246 (930)
......+.|.+++++.|..+ .....-... .+.....+.++.+ .++++|+..... +..+++++++.|+ .
T Consensus 153 ~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~ai~~~~d~--a~g~~~al~~~g~--~ 224 (304)
T 3gbv_A 153 QQESREIGFRQYMQEHHPACNILELNLHADL----NIEDSRMLDDFFREHPDVKHGITFNSK--VYIIGEYLQQRRK--S 224 (304)
T ss_dssp HHHHHHHHHHHHHHHHCTTSEEEEEEEESSC----SSCHHHHHHHHHHHCTTCCEEEESSSC--THHHHHHHHHTTC--C
T ss_pred hHHHHHHHHHHHHHhhCCCcEEEEeeecCCC----HHHHHHHHHHHHHhCCCeEEEEEcCcc--hHHHHHHHHHcCC--C
Confidence 34566789999999987643 322111111 1222333444433 357887765544 7789999999998 4
Q ss_pred ceEEEEeC
Q 002371 247 GYVWIATT 254 (930)
Q Consensus 247 ~~~~i~~~ 254 (930)
+...++.|
T Consensus 225 di~vig~d 232 (304)
T 3gbv_A 225 DFSLIGYD 232 (304)
T ss_dssp SCEEEEES
T ss_pred CcEEEEeC
Confidence 44455544
No 97
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=98.32 E-value=3.6e-05 Score=81.78 Aligned_cols=200 Identities=9% Similarity=0.054 Sum_probs=131.9
Q ss_pred eEEEeEEeecCCCcchHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccCChhhHH
Q 002371 26 VLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVMAH 105 (930)
Q Consensus 26 ~I~IG~~~~l~~~~G~~~~~a~~lAve~iN~~ggil~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~S~~~~ 105 (930)
..+||++-.++.++-.....|++-++++ .|- .|+++.+.+.|++.++........+|.+++|++||...+ ....
T Consensus 2 ~~~Igvi~~~~~p~~~~i~~gi~~~l~~---~gy--~g~~v~l~~~~~~~~~~~~~~~~~~l~~~~vDgII~~~~-~~~~ 75 (295)
T 3lft_A 2 NAKIGVLQFVSHPSLDLIYKGIQDGLAE---EGY--KDDQVKIDFMNSEGDQSKVATMSKQLVANGNDLVVGIAT-PAAQ 75 (295)
T ss_dssp CEEEEEEECSCCHHHHHHHHHHHHHHHH---TTC--CGGGEEEEEEECTTCHHHHHHHHHHHTTSSCSEEEEESH-HHHH
T ss_pred ceEEEEEEccCChhHHHHHHHHHHHHHH---cCC--CCCceEEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCc-HHHH
Confidence 4679988333443333445565555444 443 367999999999999999988889998889999987543 2233
Q ss_pred HHHHhhhcCCCcEEEeecCCCCCCC------CCCCeEEEccCChHHHHHHHHHHHHHc--CCcEEEEEEecCC-cCcchH
Q 002371 106 VLSHLANELQVPLLSFTALDPTLSP------LQYPFFVQTAPNDLYLMSAIAEMVSYF--GWGEVIAIFNDDD-QGRNGV 176 (930)
Q Consensus 106 av~~~~~~~~vp~is~~a~~~~ls~------~~~~~~fr~~p~~~~~~~ai~~~l~~~--~w~~vaii~~d~~-~g~~~~ 176 (930)
.+.. ...++|+|..+..++.... ...+++.... +...+...++++... |.+++++|+.+.. .++...
T Consensus 76 ~~~~--~~~~iPvV~~~~~~~~~~~~v~~~~~~~~~~~gv~--~~~~~~~~~~~l~~~~pg~~~I~~i~~~~~~~~~~r~ 151 (295)
T 3lft_A 76 GLAS--ATKDLPVIMAAITDPIGANLVKDLKKPGGNVTGVS--DHNPAQQQVELIKALTPNVKTIGALYSSSEDNSKTQV 151 (295)
T ss_dssp HHHH--HCSSSCEEEESCSCTTTTTSCSCSSCCCSSEEEEE--ECCCHHHHHHHHHHHCTTCCEEEEEEETTCHHHHHHH
T ss_pred HHHH--cCCCCCEEEEeccChhhcCccccccCCCCcEEEEE--CCccHHHHHHHHHHhCCCCcEEEEEeCCCCcchHHHH
Confidence 3332 2479999987655543211 0112333332 233356677888777 9999999997644 345667
Q ss_pred HHHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchhhHHHHHHHHHHcCC
Q 002371 177 TALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGM 243 (930)
Q Consensus 177 ~~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~~~~~~~~~a~~~g~ 243 (930)
+.+++++++.|+++...... . ..+....+.++. .++|+|+...+ ..+...++++.+.|.
T Consensus 152 ~g~~~al~~~gi~~~~~~~~--~----~~~~~~~~~~l~-~~~dai~~~~D-~~a~g~~~~l~~~~~ 210 (295)
T 3lft_A 152 EEFKAYAEKAGLTVETFAVP--S----TNEIASTVTVMT-SKVDAIWVPID-NTIASGFPTVVSSNQ 210 (295)
T ss_dssp HHHHHHHHHTTCEEEEEEES--S----GGGHHHHHHHHT-TTCSEEEECSC-HHHHHTHHHHHHHTT
T ss_pred HHHHHHHHHcCCEEEEEecC--C----HHHHHHHHHHHH-hcCCEEEECCc-hhHHHHHHHHHHHHH
Confidence 89999999999988754332 2 346677788876 47898877543 445556777777774
No 98
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=98.30 E-value=3e-05 Score=82.26 Aligned_cols=211 Identities=9% Similarity=-0.045 Sum_probs=137.0
Q ss_pred CCceEEEeEEeec-CCCcchHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccCCh
Q 002371 23 KPEVLNVGAIFSF-GTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSA 101 (930)
Q Consensus 23 ~~~~I~IG~~~~l-~~~~G~~~~~a~~lAve~iN~~ggil~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~S 101 (930)
....-+||++.|- +..+-.....|++-++++. |+++. +.++..++.........++.++|++||-....
T Consensus 17 ~~~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~--------g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~ 86 (293)
T 2iks_A 17 AGRTRSIGLVIPDLENTSYTRIANYLERQARQR--------GYQLL--IACSEDQPDNEMRCIEHLLQRQVDAIIVSTSL 86 (293)
T ss_dssp -CCCCEEEEEESCSCSHHHHHHHHHHHHHHHHT--------TCEEE--EEECTTCHHHHHHHHHHHHHTTCSEEEECCSS
T ss_pred cCCCcEEEEEeCCCcCcHHHHHHHHHHHHHHHC--------CCEEE--EEcCCCCHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 3456789999985 3444455667777776652 55554 45666777777777788888899988854333
Q ss_pred hhHHHHHHhhhcCCCcEEEeecCCCCCCCCCCCeEEEccCChHHHHHHHHHHHHHcCCcEEEEEEecC--CcCcchHHHH
Q 002371 102 VMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDD--DQGRNGVTAL 179 (930)
Q Consensus 102 ~~~~av~~~~~~~~vp~is~~a~~~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~~~w~~vaii~~d~--~~g~~~~~~~ 179 (930)
.....+...+...++|+|......+ +.. +.....++...+..+++++...|.++|+++.... .......+.|
T Consensus 87 ~~~~~~~~~~~~~~iPvV~~~~~~~---~~~---~~~V~~d~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf 160 (293)
T 2iks_A 87 PPEHPFYQRWANDPFPIVALDRALD---REH---FTSVVGADQDDAEMLAEELRKFPAETVLYLGALPELSVSFLREQGF 160 (293)
T ss_dssp CTTCHHHHTTTTSSSCEEEEESCCC---TTT---CEEEEECHHHHHHHHHHHHHTSCCSSEEEEEECTTSHHHHHHHHHH
T ss_pred CCcHHHHHHHHhCCCCEEEECCccC---cCC---CCEEEecCHHHHHHHHHHHHHCCCCEEEEEecCcccccHHHHHHHH
Confidence 2222344556678999998765322 112 2345567777788888998888999999998643 3345667889
Q ss_pred HHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcC--CceEEEEEcchhhHHHHHHHHHHcCCCCCc-eEEEEeC
Q 002371 180 GDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGMMDSG-YVWIATT 254 (930)
Q Consensus 180 ~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~--~~~viv~~~~~~~~~~~~~~a~~~g~~~~~-~~~i~~~ 254 (930)
.+++++.|++..... ... .+..+-...+.++.+. ++++|+ +.+...+..+++++++.|+..++ ...++.|
T Consensus 161 ~~~l~~~g~~~~~~~--~~~--~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di~vvg~d 233 (293)
T 2iks_A 161 RTAWKDDPREVHFLY--ANS--YEREAAAQLFEKWLETHPMPQALF-TTSFALLQGVMDVTLRRDGKLPSDLAIATFG 233 (293)
T ss_dssp HHHHTTCCCCEEEEE--ESS--SCHHHHHHHHHHHTTTSCCCSEEE-ESSHHHHHHHHHHHHHHHSSCCSSCEEEEES
T ss_pred HHHHHHcCCCccEEE--cCC--CChhhHHHHHHHHHhcCCCCCEEE-ECChHHHHHHHHHHHHcCCCCCCceEEEEEC
Confidence 999999997443222 111 1244444556666544 467755 45566788899999999986443 3444444
No 99
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=98.28 E-value=7.2e-05 Score=81.59 Aligned_cols=214 Identities=12% Similarity=0.017 Sum_probs=142.9
Q ss_pred eEEEeEEeecCC--CcchHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHh--cCcEEEEccCCh
Q 002371 26 VLNVGAIFSFGT--VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFME--TDTLAIVGPQSA 101 (930)
Q Consensus 26 ~I~IG~~~~l~~--~~G~~~~~a~~lAve~iN~~ggil~g~~l~l~~~D~~~~~~~a~~~a~~li~--~~v~aiiGp~~S 101 (930)
..+||++.|-.. .+-.....|++-++++. |+++.+ .++..++..-.+...+++. +++++||-....
T Consensus 3 ~~~Ig~i~p~~~~~~f~~~~~~g~~~~a~~~--------g~~~~~--~~~~~~~~~~~~~i~~~i~~~~~vDgiIi~~~~ 72 (350)
T 3h75_A 3 LTSVVFLNPGNSTETFWVSYSQFMQAAARDL--------GLDLRI--LYAERDPQNTLQQARELFQGRDKPDYLMLVNEQ 72 (350)
T ss_dssp CCEEEEEECSCTTCHHHHHHHHHHHHHHHHH--------TCEEEE--EECTTCHHHHHHHHHHHHHSSSCCSEEEEECCS
T ss_pred CCEEEEECCCCCCChHHHHHHHHHHHHHHHc--------CCeEEE--EECCCCHHHHHHHHHHHHhcCCCCCEEEEeCch
Confidence 468999999743 45567788888888875 455554 4777888888888999999 588887754344
Q ss_pred hhHHHHHHhhhcCCCcEEEeecCCCCCCC-------CCCC-eEEEccCChHHHHHHHHHHHHHcC------C-cEEEEEE
Q 002371 102 VMAHVLSHLANELQVPLLSFTALDPTLSP-------LQYP-FFVQTAPNDLYLMSAIAEMVSYFG------W-GEVIAIF 166 (930)
Q Consensus 102 ~~~~av~~~~~~~~vp~is~~a~~~~ls~-------~~~~-~~fr~~p~~~~~~~ai~~~l~~~~------w-~~vaii~ 166 (930)
.....+...+...++|+|......+.... ..|+ ++.....++...+..+++++...| . ++++++.
T Consensus 73 ~~~~~~~~~~~~~giPvV~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~g~~~~~g~~~~i~~i~ 152 (350)
T 3h75_A 73 YVAPQILRLSQGSGIKLFIVNSPLTLDQRELIGQSRQNYSDWIGSMVGDDEEAGYRMLKELLHKLGPVPAGHGIELLAFS 152 (350)
T ss_dssp SHHHHHHHHHTTSCCEEEEEESCCCTTTC------------CEEEEECCHHHHHHHHHHHHHHHHCCCCSSCCEEEEEEE
T ss_pred hhHHHHHHHHHhCCCcEEEEcCCCChHHHhhhcCCchhccceeeeecCChHHHHHHHHHHHHHHhhhhcCCCCceEEEEe
Confidence 44556667788899999998765443321 1122 256677788888888999887766 4 8999997
Q ss_pred ec--CCcCcchHHHHHHHHHhcCc-EEEEEEecCCCCCCChhHHHHHHHHHhcCC--ceEEEEEcchhhHHHHHHHHHHc
Q 002371 167 ND--DDQGRNGVTALGDKLAEIRC-KISYKSALPPDQSVTETDVRNELVKVRMME--ARVIVVHGYSRTGLMVFDVAQRL 241 (930)
Q Consensus 167 ~d--~~~g~~~~~~~~~~l~~~g~-~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~--~~viv~~~~~~~~~~~~~~a~~~ 241 (930)
.+ ........+.|.+++++.|. ++... +... .+.+.....+.++.+.. +++| ++.+...+..+++++++.
T Consensus 153 g~~~~~~~~~R~~Gf~~~l~~~~~~~~~~~--~~~~--~~~~~~~~~~~~~L~~~~~~~aI-~~~~d~~a~g~~~al~~~ 227 (350)
T 3h75_A 153 GLKVTPAAQLRERGLRRALAEHPQVHLRQL--VYGE--WNRERAYRQAQQLLKRYPKTQLV-WSANDEMALGAMQAAREL 227 (350)
T ss_dssp SCTTSHHHHHHHHHHHHHHHHCTTEEEEEE--EECT--TCHHHHHHHHHHHHHHCTTEEEE-EESSHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCeEEEEE--eeCC--CcHHHHHHHHHHHHHhCCCcCEE-EECChHHHHHHHHHHHHc
Confidence 54 23344567899999999986 22222 2222 22455555566665444 4544 455667788899999999
Q ss_pred CCCCCc-eEEEEeC
Q 002371 242 GMMDSG-YVWIATT 254 (930)
Q Consensus 242 g~~~~~-~~~i~~~ 254 (930)
|+..++ ...++.+
T Consensus 228 G~~vP~di~vvg~d 241 (350)
T 3h75_A 228 GRKPGTDLLFSGVN 241 (350)
T ss_dssp TCCBTTTBEEEEES
T ss_pred CCCCCCCeEEEecC
Confidence 987443 3444444
No 100
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=98.28 E-value=6.8e-05 Score=79.96 Aligned_cols=212 Identities=13% Similarity=-0.027 Sum_probs=141.3
Q ss_pred eEEEeEEeecC-CCcchHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEc-cCChhh
Q 002371 26 VLNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVG-PQSAVM 103 (930)
Q Consensus 26 ~I~IG~~~~l~-~~~G~~~~~a~~lAve~iN~~ggil~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiG-p~~S~~ 103 (930)
.-+||++.|-. ..+-.....+++-++++. |+++.+. .++..++..-.+....++++++++||- |..+..
T Consensus 4 ~~~I~~i~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~~-~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~ 74 (305)
T 3g1w_A 4 NETYMMITFQSGMDYWKRCLKGFEDAAQAL--------NVTVEYR-GAAQYDIQEQITVLEQAIAKNPAGIAISAIDPVE 74 (305)
T ss_dssp -CEEEEEESSTTSTHHHHHHHHHHHHHHHH--------TCEEEEE-ECSSSCHHHHHHHHHHHHHHCCSEEEECCSSTTT
T ss_pred CceEEEEEccCCChHHHHHHHHHHHHHHHc--------CCEEEEe-CCCcCCHHHHHHHHHHHHHhCCCEEEEcCCCHHH
Confidence 35789998874 445556778888888874 5666542 477788888888888899889988874 444433
Q ss_pred HHHHHHhhhcCCCcEEEeecCCCCCCCCCCCeEEEccCChHHHHHHHHHHHHHc--CCcEEEEEEecC-CcCcchHHHHH
Q 002371 104 AHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYF--GWGEVIAIFNDD-DQGRNGVTALG 180 (930)
Q Consensus 104 ~~av~~~~~~~~vp~is~~a~~~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~~--~w~~vaii~~d~-~~g~~~~~~~~ 180 (930)
.......+.+.++|+|......+. . +.+..+..++...+..+++++... |.++++++.... .......+.|.
T Consensus 75 ~~~~~~~~~~~~iPvV~~~~~~~~---~--~~~~~V~~d~~~~g~~~~~~l~~~~~g~~~i~~i~~~~~~~~~~R~~gf~ 149 (305)
T 3g1w_A 75 LTDTINKAVDAGIPIVLFDSGAPD---S--HAHSFLGTNNYNAGMNAAYKMAELLDGEGEVAVITLPNQLNHQERTTGFK 149 (305)
T ss_dssp THHHHHHHHHTTCCEEEESSCCTT---S--CCSCEEECCHHHHHHHHHHHHHHHTTTCEEEEEEECTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCcEEEECCCCCC---C--ceeEEECcCHHHHHHHHHHHHHHHhCCCcEEEEEeCCCcccHHHHHHHHH
Confidence 344556667789999987654321 1 123345577788888899998888 999999998542 23334567899
Q ss_pred HHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcC--CceEEEEEcchhhHHHHHHHHHHcCCCCCceEEEEeCc
Q 002371 181 DKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTW 255 (930)
Q Consensus 181 ~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~--~~~viv~~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~ 255 (930)
+++++.|..+.....+... .+.......+.++.+. ++++|+ +.+...+..+++++++.|+. .+...++.|.
T Consensus 150 ~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~-~di~vig~d~ 222 (305)
T 3g1w_A 150 ETLEAEFPAIEVIAVEDGR--GDSLHSRRVAHQLLEDYPNLAGIF-ATEANGGVGVGDAVRLESRA-GEIQIISFDT 222 (305)
T ss_dssp HHHHHHCTTEEEEEEEECT--TCHHHHHHHHHHHHHHCTTEEEEE-ESSHHHHHHHHHHHHHTTCT-TTSEEEEESC
T ss_pred HHHHhhCCCCEEEEEecCC--CCHHHHHHHHHHHHHhCCCceEEE-ECCCcchhhHHHHHHhcCCC-CCeEEEEeCC
Confidence 9999887655433322222 2344555555655443 456544 56667788999999999986 4445555543
No 101
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=98.27 E-value=3.2e-06 Score=88.88 Aligned_cols=202 Identities=12% Similarity=0.030 Sum_probs=120.3
Q ss_pred EEeEEeec-CCCcchHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccCChhhHHH
Q 002371 28 NVGAIFSF-GTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVMAHV 106 (930)
Q Consensus 28 ~IG~~~~l-~~~~G~~~~~a~~lAve~iN~~ggil~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~S~~~~a 106 (930)
+||+++|- +..+-.....+++-++++. |+++. +.++..++.........++.+++++||....+... .
T Consensus 1 ~Igvi~~~~~~~~~~~~~~gi~~~~~~~--------g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~-~ 69 (276)
T 2h0a_A 1 TVSVLLPFVATEFYRRLVEGIEGVLLEQ--------RYDLA--LFPILSLARLKRYLENTTLAYLTDGLILASYDLTE-R 69 (276)
T ss_dssp CEEEEECCSCCHHHHHHHHHHHHHHGGG--------TCEEE--ECCCCSCCCCC---------CCCSEEEEESCCCC---
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHHC--------CCEEE--EEeCCCchhhHHHHHHHHHhCCCCEEEEecCCCCH-H
Confidence 48999885 3444445556666655542 45544 45666665555556667777888888753332222 3
Q ss_pred HHHhhhcCCCcEEEeecCCCCCCCCCCCeEEEccCChHHHHHHHHHHHHHcCCcEEEEEEecC-C-----cCc-chHHHH
Q 002371 107 LSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDD-D-----QGR-NGVTAL 179 (930)
Q Consensus 107 v~~~~~~~~vp~is~~a~~~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~~~w~~vaii~~d~-~-----~g~-~~~~~~ 179 (930)
....+.+.++|++......+ . +.....++...+..+++++...|.++++++..+. . ..+ ...+.|
T Consensus 70 ~~~~~~~~~iPvV~~~~~~~----~----~~~V~~d~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~~~~~~R~~gf 141 (276)
T 2h0a_A 70 FEEGRLPTERPVVLVDAQNP----R----YDSVYLDNRLGGRLAGAYLARFPGPIFAIAVEEEPDRAFRRTVFAERMAGF 141 (276)
T ss_dssp ----CCSCSSCEEEESSCCT----T----SEEEEECSHHHHHHHHHHHTTSSSCEEEEEECCSCCC---CCHHHHHHHHH
T ss_pred HHHHHhhcCCCEEEEeccCC----C----CCEEEEccHHHHHHHHHHHHHcCCCeEEEEecCcccccccchhHHHHHHHH
Confidence 34456678999998754332 1 3445567777788889998888999999998654 3 445 667899
Q ss_pred HHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcC--CceEEEEEcchhhHHHHHHHHHHcCCCCCceEEE
Q 002371 180 GDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWI 251 (930)
Q Consensus 180 ~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~--~~~viv~~~~~~~~~~~~~~a~~~g~~~~~~~~i 251 (930)
.+++++.|+++.....+... .+..+....+.++.+. ++++|+ +.+...+..+++++++.|+..++-+.+
T Consensus 142 ~~~l~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di~v 212 (276)
T 2h0a_A 142 QEALKEAGRPFSPDRLYITR--HSQEGGRLALRHFLEKASPPLNVF-AGADQVALGVLEEAVRLGLTPGRDVRV 212 (276)
T ss_dssp HHHHHHTTCCCCGGGEEEEC--SSHHHHHHHHHHHHTTCCSSEEEE-CSSHHHHHHHHHHHHTTSCTTTTSEEE
T ss_pred HHHHHHcCCCCChHHeeecC--CChHHHHHHHHHHHhCCCCCCEEE-ECCcHHHHHHHHHHHHcCCCCCCCeEE
Confidence 99999998764311011111 1244444556666554 477766 667777889999999999865444433
No 102
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=98.27 E-value=6.9e-05 Score=78.99 Aligned_cols=205 Identities=11% Similarity=0.108 Sum_probs=131.8
Q ss_pred EEeEEeec-CCCcchHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEc-cCChhhHH
Q 002371 28 NVGAIFSF-GTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVG-PQSAVMAH 105 (930)
Q Consensus 28 ~IG~~~~l-~~~~G~~~~~a~~lAve~iN~~ggil~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiG-p~~S~~~~ 105 (930)
+||++.|- +..+......|++.++++. |+++ .+.++..++.........+++++|++||- |..+....
T Consensus 3 ~Igvi~~~~~~~f~~~~~~gi~~~~~~~--------g~~~--~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~ 72 (283)
T 2ioy_A 3 TIGLVISTLNNPFFVTLKNGAEEKAKEL--------GYKI--IVEDSQNDSSKELSNVEDLIQQKVDVLLINPVDSDAVV 72 (283)
T ss_dssp EEEEEESCSSSHHHHHHHHHHHHHHHHH--------TCEE--EEEECTTCHHHHHHHHHHHHHTTCSEEEECCSSTTTTH
T ss_pred EEEEEecCCCCHHHHHHHHHHHHHHHhc--------CcEE--EEecCCCCHHHHHHHHHHHHHcCCCEEEEeCCchhhhH
Confidence 68999885 3444556677888877764 4554 45677778877777788888889988774 44333322
Q ss_pred HHHHhhhcCCCcEEEeecCCCCCCCCCCCeEEEccCChHHHHHHHHHHHHHc-C-CcEEEEEEecCC--cCcchHHHHHH
Q 002371 106 VLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYF-G-WGEVIAIFNDDD--QGRNGVTALGD 181 (930)
Q Consensus 106 av~~~~~~~~vp~is~~a~~~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~~-~-w~~vaii~~d~~--~g~~~~~~~~~ 181 (930)
.....+.+.++|+|......+ +. +.+.....++...+..++++|... | .++++++..... ......+.|.+
T Consensus 73 ~~~~~~~~~~iPvV~~~~~~~---~~--~~~~~V~~D~~~~g~~a~~~L~~~~gg~~~I~~i~g~~~~~~~~~R~~Gf~~ 147 (283)
T 2ioy_A 73 TAIKEANSKNIPVITIDRSAN---GG--DVVCHIASDNVKGGEMAAEFIAKALKGKGNVVELEGIPGASAARDRGKGFDE 147 (283)
T ss_dssp HHHHHHHHTTCCEEEESSCCS---SS--CCSEEEEECHHHHHHHHHHHHHHHTTTCEEEEEEECCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCeEEEecCCCC---Cc--ceeEEEecChHHHHHHHHHHHHHHcCCCceEEEEECCCCCccHHHHHHHHHH
Confidence 334556678999998754321 11 122234456666778888887776 5 899999985432 23455788999
Q ss_pred HHHhc-CcEEEEEEecCCCCCCChhHHHHHHHHHhcC--CceEEEEEcchhhHHHHHHHHHHcCCCCCceEEEEeC
Q 002371 182 KLAEI-RCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATT 254 (930)
Q Consensus 182 ~l~~~-g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~--~~~viv~~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~ 254 (930)
++++. |+++.....-.. +.++-...+.++.+. ++++| ++.+...+..+++++++.|+ .+...++.|
T Consensus 148 al~~~~~~~~~~~~~~~~----~~~~~~~~~~~ll~~~~~~~ai-~~~nD~~A~g~~~al~~~G~--~di~viG~D 216 (283)
T 2ioy_A 148 AIAKYPDIKIVAKQAADF----DRSKGLSVMENILQAQPKIDAV-FAQNDEMALGAIKAIEAANR--QGIIVVGFD 216 (283)
T ss_dssp HHTTCTTEEEEEEEECTT----CHHHHHHHHHHHHHHCSCCCEE-EESSHHHHHHHHHHHHHTTC--CCCEEEEEE
T ss_pred HHHhCCCCEEEeeccCCC----CHHHHHHHHHHHHHhCCCccEE-EECCchHHHHHHHHHHHCCC--CCcEEEEeC
Confidence 99998 887654322221 244444455555443 45654 45666778889999999997 344444443
No 103
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=98.26 E-value=5.8e-05 Score=79.95 Aligned_cols=209 Identities=10% Similarity=0.025 Sum_probs=139.0
Q ss_pred CceEEEeEEeecC-CCcchHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEc-cCCh
Q 002371 24 PEVLNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVG-PQSA 101 (930)
Q Consensus 24 ~~~I~IG~~~~l~-~~~G~~~~~a~~lAve~iN~~ggil~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiG-p~~S 101 (930)
...-+||+++|-. ..+-.....|++-++++. |+++. +.++..++.........++++++++||- |...
T Consensus 6 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~ 75 (293)
T 3l6u_A 6 PKRNIVGFTIVNDKHEFAQRLINAFKAEAKAN--------KYEAL--VATSQNSRISEREQILEFVHLKVDAIFITTLDD 75 (293)
T ss_dssp ---CEEEEEESCSCSHHHHHHHHHHHHHHHHT--------TCEEE--EEECSSCHHHHHHHHHHHHHTTCSEEEEECSCT
T ss_pred CCCcEEEEEEecCCcHHHHHHHHHHHHHHHHc--------CCEEE--EECCCCCHHHHHHHHHHHHHcCCCEEEEecCCh
Confidence 3467899999863 444455667777777663 45544 5677778888888888899888888774 3333
Q ss_pred hhHHHHHHhhhcCCCcEEEeecCCCCCCCCCCCeEEEccCChHHHHHHHHHHHHH-c-CCc-----EEEEEEec--CCcC
Q 002371 102 VMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSY-F-GWG-----EVIAIFND--DDQG 172 (930)
Q Consensus 102 ~~~~av~~~~~~~~vp~is~~a~~~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~-~-~w~-----~vaii~~d--~~~g 172 (930)
.........+.+.++|+|......+. .+.+.....++...+..+++++.. + |.+ +++++... ....
T Consensus 76 ~~~~~~~~~~~~~~iPvV~~~~~~~~-----~~~~~~V~~D~~~~g~~~~~~l~~~~~g~~~~~~~~i~~i~g~~~~~~~ 150 (293)
T 3l6u_A 76 VYIGSAIEEAKKAGIPVFAIDRMIRS-----DAVVSSITSNNQMIGEQLASYIKNELIKQTGRSTGRIVEITGTANVYTT 150 (293)
T ss_dssp TTTHHHHHHHHHTTCCEEEESSCCCC-----TTCSEEEEECHHHHHHHHHHHHHHHHHHHHSCSCEEEEEEECSTTCHHH
T ss_pred HHHHHHHHHHHHcCCCEEEecCCCCC-----CcceeEEecCHHHHHHHHHHHHHHHhccCCCCCCceEEEEECCCCCchH
Confidence 33334556667789999987554332 123345567777888888888777 5 777 99999843 3344
Q ss_pred cchHHHHHHHHHhc-CcEEEEEEecCCCCCCChhHHHHHHHHHhcC--CceEEEEEcchhhHHHHHHHHHHcCCCCCceE
Q 002371 173 RNGVTALGDKLAEI-RCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGMMDSGYV 249 (930)
Q Consensus 173 ~~~~~~~~~~l~~~-g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~--~~~viv~~~~~~~~~~~~~~a~~~g~~~~~~~ 249 (930)
....+.|.+++++. |+++.....-.. +..+....+.++.+. ++++| ++.+...+..+++++++.|+. +..
T Consensus 151 ~~R~~gf~~~l~~~~g~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~ai-~~~~d~~a~g~~~al~~~g~~--di~ 223 (293)
T 3l6u_A 151 NERHRGFLKGIENEPTLSIVDSVSGNY----DPVTSERVMRQVIDSGIPFDAV-YCHNDDIAMGVLEALKKAKIS--GKI 223 (293)
T ss_dssp HHHHHHHHHHHTTCTTEEEEEEEECTT----CHHHHHHHHHHHHHTTCCCSEE-EESSHHHHHHHHHHHHHTTCC--CCE
T ss_pred HHHHHHHHHHHHhCCCcEEeeeccCCC----CHHHHHHHHHHHHHhCCCCCEE-EECCchHHHHHHHHHHhCCCC--CeE
Confidence 55678999999999 998875432222 255555566666554 45665 455667788899999999985 433
Q ss_pred EEEeC
Q 002371 250 WIATT 254 (930)
Q Consensus 250 ~i~~~ 254 (930)
.++.|
T Consensus 224 vig~d 228 (293)
T 3l6u_A 224 VVGID 228 (293)
T ss_dssp EEEEE
T ss_pred EEEec
Confidence 44433
No 104
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=98.26 E-value=2.3e-05 Score=82.96 Aligned_cols=211 Identities=10% Similarity=0.014 Sum_probs=136.2
Q ss_pred CceEEEeEEeec-CCCcchHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccCChh
Q 002371 24 PEVLNVGAIFSF-GTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAV 102 (930)
Q Consensus 24 ~~~I~IG~~~~l-~~~~G~~~~~a~~lAve~iN~~ggil~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~S~ 102 (930)
...-+||+++|- +..+-.....|++-++++. |+++. +.++..++....+....+++++|++||-.....
T Consensus 14 ~~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~ 83 (289)
T 2fep_A 14 KKTTTVGVIIPDISSIFYSELARGIEDIATMY--------KYNII--LSNSDQNMEKELHLLNTMLGKQVDGIVFMGGNI 83 (289)
T ss_dssp --CCEEEEEESCTTSHHHHHHHHHHHHHHHHT--------TCEEE--EEECTTCHHHHHHHHHHHHHTTCSEEEECCSCC
T ss_pred CCCCeEEEEeCCCCCchHHHHHHHHHHHHHHc--------CCEEE--EEeCCCCHHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 346789999985 3444455677777777652 56654 456777887777778888888999888533222
Q ss_pred hHHHHHHhhhcCCCcEEEeecCCCCCCCCCCCeEEEccCChHHHHHHHHHHHHHcCCcEEEEEEecC---CcCcchHHHH
Q 002371 103 MAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDD---DQGRNGVTAL 179 (930)
Q Consensus 103 ~~~av~~~~~~~~vp~is~~a~~~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~~~w~~vaii~~d~---~~g~~~~~~~ 179 (930)
... ....+...++|+|......+ +.. +.....++...+..+++++...|.++++++.... .......+.|
T Consensus 84 ~~~-~~~~l~~~~iPvV~~~~~~~---~~~---~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~Gf 156 (289)
T 2fep_A 84 TDE-HVAEFKRSPVPIVLAASVEE---QEE---TPSVAIDYEQAIYDAVKLLVDKGHTDIAFVSGPMAEPINRSKKLQGY 156 (289)
T ss_dssp CHH-HHHHHHHSSSCEEEESCCCT---TCC---SCEEECCHHHHHHHHHHHHHHTTCSSEEEEESCTTSHHHHTTHHHHH
T ss_pred CHH-HHHHHHhcCCCEEEEccccC---CCC---CCEEEECcHHHHHHHHHHHHHCCCCeEEEEeCCccccccHHHHHHHH
Confidence 222 23344578999998754322 122 2345567777788888998889999999998643 3356678899
Q ss_pred HHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcC--CceEEEEEcchhhHHHHHHHHHHcCCCCCc-eEEEEeC
Q 002371 180 GDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGMMDSG-YVWIATT 254 (930)
Q Consensus 180 ~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~--~~~viv~~~~~~~~~~~~~~a~~~g~~~~~-~~~i~~~ 254 (930)
.+++++.|+++.....+... .+..+-...+.++.+. ++++|+ +.+...+..+++++++.|+..++ ...++.|
T Consensus 157 ~~al~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~A~g~~~al~~~G~~vP~di~vvg~D 231 (289)
T 2fep_A 157 KRALEEANLPFNEQFVAEGD--YTYDSGLEALQHLMSLDKKPTAIL-SATDEMALGIIHAAQDQGLSIPEDLDIIGFD 231 (289)
T ss_dssp HHHHHHTTCCCCGGGEEECC--SCHHHHHHHHHHHTTSSSCCSEEE-ESSHHHHHHHHHHHHHTTCCTTTTCEEEEEE
T ss_pred HHHHHHcCCCCChheEeeCC--CCHHHHHHHHHHHHcCCCCCCEEE-ECCHHHHHHHHHHHHHcCCCCCCCeEEEEEC
Confidence 99999999765321111111 1244445556666553 567765 45666788899999999986443 3344433
No 105
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=98.25 E-value=2.6e-05 Score=81.77 Aligned_cols=204 Identities=10% Similarity=0.005 Sum_probs=131.6
Q ss_pred eEEEeEEeec-CCCcchHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccCChhhH
Q 002371 26 VLNVGAIFSF-GTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVMA 104 (930)
Q Consensus 26 ~I~IG~~~~l-~~~~G~~~~~a~~lAve~iN~~ggil~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~S~~~ 104 (930)
.-+||++.|- +..+-.....|++-++++. |+++.+ .++..++.........++.++|++||-.......
T Consensus 3 s~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~--------g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~~ 72 (275)
T 3d8u_A 3 AYSIALIIPSLFEKACAHFLPSFQQALNKA--------GYQLLL--GYSDYSIEQEEKLLSTFLESRPAGVVLFGSEHSQ 72 (275)
T ss_dssp -CEEEEEESCSSCHHHHHHHHHHHHHHHHT--------SCEECC--EECTTCHHHHHHHHHHHHTSCCCCEEEESSCCCH
T ss_pred ceEEEEEeCCCccccHHHHHHHHHHHHHHC--------CCEEEE--EcCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCH
Confidence 3479999985 3444445667777776652 565544 4666677777777778888888776632221112
Q ss_pred HHHHHhhhcCCCcEEEeecCCCCCCCCCCCeEEEccCChHHHHHHHHHHHHHcCCcEEEEEEecC--CcCcchHHHHHHH
Q 002371 105 HVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDD--DQGRNGVTALGDK 182 (930)
Q Consensus 105 ~av~~~~~~~~vp~is~~a~~~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~~~w~~vaii~~d~--~~g~~~~~~~~~~ 182 (930)
.....+.+.++|+|......+ + +.+..+..++...+..+++++...|.++++++..+. .......+.|.++
T Consensus 73 -~~~~~l~~~~iPvV~~~~~~~---~---~~~~~V~~d~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~ 145 (275)
T 3d8u_A 73 -RTHQLLEASNTPVLEIAELSS---K---ASYLNIGVDHFEVGKACTRHLIEQGFKNVGFIGARGNHSTLQRQLHGWQSA 145 (275)
T ss_dssp -HHHHHHHHHTCCEEEESSSCS---S---SSSEEECBCHHHHHHHHHHHHHTTTCCCEEEEECSCSSHHHHHHHHHHHHH
T ss_pred -HHHHHHHhCCCCEEEEeeccC---C---CCCCEEEEChHHHHHHHHHHHHHCCCCeEEEEcCCCCCchHHHHHHHHHHH
Confidence 334445567999998754322 1 223456677777788889998888999999998653 3345667889999
Q ss_pred HHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcC--CceEEEEEcchhhHHHHHHHHHHcCCCCCceE
Q 002371 183 LAEIRCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGMMDSGYV 249 (930)
Q Consensus 183 l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~--~~~viv~~~~~~~~~~~~~~a~~~g~~~~~~~ 249 (930)
+++.|+.+.....+... .+..+....+.++.+. ++++|+ +.+...+..+++++++.|+..++-+
T Consensus 146 l~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di 211 (275)
T 3d8u_A 146 MIENYLTPDHFLTTHEA--PSSQLGAEGLAKLLLRDSSLNALV-CSHEEIAIGALFECHRRVLKVPTDI 211 (275)
T ss_dssp HHHTTCCCCCEEECSSC--CCHHHHHHHHHHHHTTCTTCCEEE-ESSHHHHHHHHHHHHHTTCCTTTTC
T ss_pred HHHcCCCCCccEEEeCC--CChhHHHHHHHHHHhCCCCCCEEE-EcCcHHHHHHHHHHHHcCCCCCCce
Confidence 99999765322222222 2344445556666544 477766 4556678889999999998654433
No 106
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=98.24 E-value=1.9e-05 Score=85.60 Aligned_cols=211 Identities=9% Similarity=0.019 Sum_probs=134.9
Q ss_pred CceEEEeEEeec-CCCcchHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccCChh
Q 002371 24 PEVLNVGAIFSF-GTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAV 102 (930)
Q Consensus 24 ~~~I~IG~~~~l-~~~~G~~~~~a~~lAve~iN~~ggil~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~S~ 102 (930)
....+||++.|- +..+......|++-++++. |+++.+ .++..++.........++.++|++||-.....
T Consensus 61 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~--------g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~ 130 (332)
T 2o20_A 61 KRTTTVGVILPTITSTYFAAITRGVDDIASMY--------KYNMIL--ANSDNDVEKEEKVLETFLSKQVDGIVYMGSSL 130 (332)
T ss_dssp -CCCEEEEEESCTTCHHHHHHHHHHHHHHHHT--------TCEEEE--EECTTCHHHHHHHHHHHHHTTCSEEEECSSCC
T ss_pred CCCCEEEEEeCCCCCcHHHHHHHHHHHHHHHc--------CCEEEE--EECCCChHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence 346789999985 3444556677777777662 566554 46667777777777788888999888533222
Q ss_pred hHHHHHHhhhcCCCcEEEeecCCCCCCCCCCCeEEEccCChHHHHHHHHHHHHHcCCcEEEEEEecC--CcCcchHHHHH
Q 002371 103 MAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDD--DQGRNGVTALG 180 (930)
Q Consensus 103 ~~~av~~~~~~~~vp~is~~a~~~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~~~w~~vaii~~d~--~~g~~~~~~~~ 180 (930)
.... ...+...++|++......+ +...+ ....++...+..+++++...|.++++++..+. ..+....+.|.
T Consensus 131 ~~~~-~~~l~~~~iPvV~~~~~~~---~~~~~---~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~ 203 (332)
T 2o20_A 131 DEKI-RTSLKNSRTPVVLVGTIDG---DKEIP---SVNIDYHLAAYQSTKKLIDSGNKKIAYIMGSLKDVENTERMVGYQ 203 (332)
T ss_dssp CHHH-HHHHHHHCCCEEEESCCCT---TSCSC---EEECCHHHHHHHHHHHHHHTTCSSEEEECSCTTSHHHHHHHHHHH
T ss_pred CHHH-HHHHHhCCCCEEEEccccC---CCCCC---EEEeChHHHHHHHHHHHHHCCCCeEEEEeCCcccccHHHHHHHHH
Confidence 2222 3334467999998754322 12222 34566777778888998889999999998653 23455678899
Q ss_pred HHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchhhHHHHHHHHHHcCCCCCceE-EEEeC
Q 002371 181 DKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYV-WIATT 254 (930)
Q Consensus 181 ~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~~~~~~~~~a~~~g~~~~~~~-~i~~~ 254 (930)
+++++.|+++.....+... .+..+-...+.++.+.++++|+. .+...+..+++++++.|+..++-+ .++.|
T Consensus 204 ~al~~~g~~~~~~~~~~~~--~~~~~~~~~~~~ll~~~~~ai~~-~~d~~A~g~~~al~~~G~~vP~disvig~D 275 (332)
T 2o20_A 204 EALLEANIEFDENLVFEGN--YSYEQGKALAERLLERGATSAVV-SHDTVAVGLLSAMMDKGVKVPEDFEIISGA 275 (332)
T ss_dssp HHHHHTTCCCCGGGEECSC--CSHHHHHHHHHHHHHTTCCEEEE-SCHHHHHHHHHHHHHTTCCTTTTCEEEESS
T ss_pred HHHHHcCCCCChhhEEeCC--CCHHHHHHHHHHHhccCCCEEEE-CChHHHHHHHHHHHHcCCCCccCEEEEEeC
Confidence 9999999765321112211 12333334455544338888775 566678889999999998754433 34433
No 107
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=98.24 E-value=4.4e-05 Score=81.44 Aligned_cols=216 Identities=10% Similarity=-0.003 Sum_probs=138.1
Q ss_pred ceEEEeEEeecC-CCcchHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEc-cCChh
Q 002371 25 EVLNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVG-PQSAV 102 (930)
Q Consensus 25 ~~I~IG~~~~l~-~~~G~~~~~a~~lAve~iN~~ggil~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiG-p~~S~ 102 (930)
++++||++.|-. ..+-.....+++-++++. |+++ .+.++ .++..-.+....+++++|++||- |..+.
T Consensus 1 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~--------g~~~--~~~~~-~~~~~~~~~i~~l~~~~vdgiii~~~~~~ 69 (306)
T 8abp_A 1 ENLKLGFLVKQPEEPWFQTEWKFADKAGKDL--------GFEV--IKIAV-PDGEKTLNAIDSLAASGAKGFVICTPDPK 69 (306)
T ss_dssp -CEEEEEEESCTTSHHHHHHHHHHHHHHHHH--------TEEE--EEEEC-CSHHHHHHHHHHHHHTTCCEEEEECSCGG
T ss_pred CCeEEEEEeCCCCchHHHHHHHHHHHHHHHc--------CCEE--EEeCC-CCHHHHHHHHHHHHHcCCCEEEEeCCCch
Confidence 368999999864 445556778888888875 4555 45566 48888888888999999888774 44444
Q ss_pred hHHHHHHhhhcCCCcEEEeecCCCCCCCCCCCeEEEccCChHHHHHHHHHHHH-HcCCc-----EEEEEE-ecC--CcCc
Q 002371 103 MAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVS-YFGWG-----EVIAIF-NDD--DQGR 173 (930)
Q Consensus 103 ~~~av~~~~~~~~vp~is~~a~~~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~-~~~w~-----~vaii~-~d~--~~g~ 173 (930)
........+.+.++|+|......+.......+.+.....++...+..+++++. .+|.+ +++++. ... ...+
T Consensus 70 ~~~~~~~~~~~~~iPvV~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~l~~~~g~~~~~~~~i~~~~~~~~~~~~~~ 149 (306)
T 8abp_A 70 LGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMLAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTAR 149 (306)
T ss_dssp GHHHHHHHHHHTTCEEEEESSCCBCTTSCBCTTSCEEEECHHHHHHHHHHHHHHHHHHHTCCGGGEEEEEEECTTSHHHH
T ss_pred hhHHHHHHHHHCCCcEEEeCCCCCCccccccccccEEecChhHHHHHHHHHHHHHHHhcCCCccceEEEEecCCCChHHH
Confidence 55555667778899999876432222111111233344566666777777754 33444 888886 332 3344
Q ss_pred chHHHHHHHHHhcCc---EEEEEEecCCCCCCChhHHHHHHHHHhcCCc--eE-EEEEcchhhHHHHHHHHHHcCCCCCc
Q 002371 174 NGVTALGDKLAEIRC---KISYKSALPPDQSVTETDVRNELVKVRMMEA--RV-IVVHGYSRTGLMVFDVAQRLGMMDSG 247 (930)
Q Consensus 174 ~~~~~~~~~l~~~g~---~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~--~v-iv~~~~~~~~~~~~~~a~~~g~~~~~ 247 (930)
...+.|.+++++.|. +++....-. .+.+.....+.++.+..+ ++ +|++.+...+..+++++++.|+...+
T Consensus 150 ~R~~Gf~~~l~~~g~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~a~~i~~~nD~~A~g~~~al~~~g~~v~d 225 (306)
T 8abp_A 150 RRTTGSMDALKAAGFPEKQIYQVPTKS----NDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAAD 225 (306)
T ss_dssp HHHHHHHHHHHHHTCCGGGEEEEECSS----SSHHHHHHHHHHHHTTCTTCSEEEEECSSHHHHHHHHHHHHHTTCCGGG
T ss_pred HHHHHHHHHHHhcCCCCcEEEeeccCC----CChHHHHHHHHHHHHhCCCCceEEEEeCCcHHHHHHHHHHHHcCCCCCc
Confidence 567889999999874 344332222 225555566666666544 55 46677778888999999999986423
Q ss_pred eEEEEeCc
Q 002371 248 YVWIATTW 255 (930)
Q Consensus 248 ~~~i~~~~ 255 (930)
...++.|.
T Consensus 226 i~vvG~D~ 233 (306)
T 8abp_A 226 IIGIGING 233 (306)
T ss_dssp EEEEEESS
T ss_pred eEEEEeCc
Confidence 34444443
No 108
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=98.23 E-value=8.7e-06 Score=86.32 Aligned_cols=203 Identities=14% Similarity=0.049 Sum_probs=121.1
Q ss_pred ceEEEeEEeec-CCCcchHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccCChhh
Q 002371 25 EVLNVGAIFSF-GTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVM 103 (930)
Q Consensus 25 ~~I~IG~~~~l-~~~~G~~~~~a~~lAve~iN~~ggil~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~S~~ 103 (930)
...+||++.|- +..+-.....+++.++++. |+++.+. .++..++.........++.++|++||.......
T Consensus 7 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~~-~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~ 77 (290)
T 3clk_A 7 SSNVIAAVVSSVRTNFAQQILDGIQEEAHKN--------GYNLIIV-YSGSADPEEQKHALLTAIERPVMGILLLSIALT 77 (290)
T ss_dssp -CCEEEEECCCCSSSHHHHHHHHHHHHHHTT--------TCEEEEE-C----------CHHHHHHSSCCSEEEEESCC--
T ss_pred cCCEEEEEeCCCCChHHHHHHHHHHHHHHHc--------CCeEEEE-eCCCCCHHHHHHHHHHHHhcCCCEEEEecccCC
Confidence 45689999985 4455556667777666641 5655443 166566666566677777788888875333222
Q ss_pred HHHHHHhhhcCCCcEEEeecCCCCCCCCCCCeEEEccCChHHHHHHHHHHHHHcCCcEEEEEEec--CCcCcchHHHHHH
Q 002371 104 AHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFND--DDQGRNGVTALGD 181 (930)
Q Consensus 104 ~~av~~~~~~~~vp~is~~a~~~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~~~w~~vaii~~d--~~~g~~~~~~~~~ 181 (930)
. .....+.+.++|+|......+. + +.....++...+..+++++...|.++++++..+ ........+.|.+
T Consensus 78 ~-~~~~~l~~~~iPvV~~~~~~~~------~-~~~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~ 149 (290)
T 3clk_A 78 D-DNLQLLQSSDVPYCFLSMGFDD------D-RPFISSDDEDIGYQATNLLINEGHRQIGIAGIDQYPYTGRKRLAGYKK 149 (290)
T ss_dssp ---CHHHHHCC--CEEEESCC--C------C-SCEEECCHHHHHHHHHHHHHTTTCCSEEEESCCCCTTTHHHHHHHHHH
T ss_pred H-HHHHHHHhCCCCEEEEcCCCCC------C-CCEEEeChHHHHHHHHHHHHHcCCCEEEEEeCCCCCcchHHHHHHHHH
Confidence 2 3334456689999987543221 1 334556777778888999888899999999854 3345567889999
Q ss_pred HHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhc-CCceEEEEEcchhhHHHHHHHHHHcCCCCCc
Q 002371 182 KLAEIRCKISYKSALPPDQSVTETDVRNELVKVRM-MEARVIVVHGYSRTGLMVFDVAQRLGMMDSG 247 (930)
Q Consensus 182 ~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~-~~~~viv~~~~~~~~~~~~~~a~~~g~~~~~ 247 (930)
++++.|+++.....+... .+..+-...+.++.+ .++++|+. .+...+..+++++++.|+..++
T Consensus 150 ~l~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~ai~~-~~d~~a~g~~~al~~~g~~vP~ 213 (290)
T 3clk_A 150 ALKEANIAINQEWIKPGD--YSYTSGEQAMKAFGKNTDLTGIIA-ASDMTAIGILNQASSFGIEVPK 213 (290)
T ss_dssp HHHHTTCCCCGGGEECCC--SSHHHHHHHHHHHCTTCCCSEEEE-SSHHHHHHHHHHHHHTTCCTTT
T ss_pred HHHHcCCCCCcceEEcCC--CChhhHHHHHHHHhccCCCcEEEE-CCcHHHHHHHHHHHHcCCCCCC
Confidence 999999765311111211 224444455566653 45777664 5566788899999999986443
No 109
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=98.21 E-value=1.5e-05 Score=84.46 Aligned_cols=210 Identities=9% Similarity=-0.047 Sum_probs=131.7
Q ss_pred ceEEEeEEeecC-CCcchHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHH---HHHHHHhcCcEEEEccCC
Q 002371 25 EVLNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIM---GALQFMETDTLAIVGPQS 100 (930)
Q Consensus 25 ~~I~IG~~~~l~-~~~G~~~~~a~~lAve~iN~~ggil~g~~l~l~~~D~~~~~~~a~~---~a~~li~~~v~aiiGp~~ 100 (930)
...+||++.|-. ..+......|++-++++. |+++. +.++..++..... ....+++++|++||-...
T Consensus 7 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 76 (290)
T 2rgy_A 7 QLGIIGLFVPTFFGSYYGTILKQTDLELRAV--------HRHVV--VATGCGESTPREQALEAVRFLIGRDCDGVVVISH 76 (290)
T ss_dssp -CCEEEEECSCSCSHHHHHHHHHHHHHHHHT--------TCEEE--EECCCSSSCHHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred CCCeEEEEeCCCCCchHHHHHHHHHHHHHHC--------CCEEE--EEeCCCchhhhhhHHHHHHHHHhcCccEEEEecC
Confidence 456899999853 444456677777777662 56654 4555556555555 667778888988885333
Q ss_pred hhhHHHHHHhhhcCCCcEEEeecCCCCCCCCCCCeEEEccCChHHHHHHHHHHHHHcCCcEEEEEEecC--CcCcchHHH
Q 002371 101 AVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDD--DQGRNGVTA 178 (930)
Q Consensus 101 S~~~~av~~~~~~~~vp~is~~a~~~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~~~w~~vaii~~d~--~~g~~~~~~ 178 (930)
.... .....+.+.++|+|......+ +. .+.....++...+..+++++...|.++++++..+. .......+.
T Consensus 77 ~~~~-~~~~~l~~~~iPvV~~~~~~~---~~---~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~G 149 (290)
T 2rgy_A 77 DLHD-EDLDELHRMHPKMVFLNRAFD---AL---PDASFCPDHRRGGELAAATLIEHGHRKLAVISGPFTASDNVERLDG 149 (290)
T ss_dssp SSCH-HHHHHHHHHCSSEEEESSCCT---TS---GGGEECCCHHHHHHHHHHHHHHTTCCSEEEEESCTTCHHHHHHHHH
T ss_pred CCCH-HHHHHHhhcCCCEEEEccccC---CC---CCCEEEeCcHHHHHHHHHHHHHCCCceEEEEeCCCCCccHHHHHHH
Confidence 2222 233444567999998754322 11 22345567777788888998888999999998653 334556788
Q ss_pred HHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhc--CCceEEEEEcchhhHHHHHHHHHHcCCCCCc-eEEEEeC
Q 002371 179 LGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRM--MEARVIVVHGYSRTGLMVFDVAQRLGMMDSG-YVWIATT 254 (930)
Q Consensus 179 ~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~--~~~~viv~~~~~~~~~~~~~~a~~~g~~~~~-~~~i~~~ 254 (930)
|.+++++.|+++.....+... .+..+-...+.++.+ .++++|+ +.+...+..+++++++.|+..++ ...++.|
T Consensus 150 f~~al~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~A~g~~~al~~~G~~vP~di~vvg~D 225 (290)
T 2rgy_A 150 FFDELARHGIARDSVPLIESD--FSPEGGYAATCQLLESKAPFTGLF-CANDTMAVSALARFQQLGISVPGDVSVIGYD 225 (290)
T ss_dssp HHHHHHTTTCCGGGSCEEECC--SSHHHHHHHHHHHHHHTCCCSEEE-ESSHHHHHHHHHHHHHTTCCTTTTCEEEEEE
T ss_pred HHHHHHHcCCCCCcccEEecC--CChhHHHHHHHHHHhCCCCCcEEE-ECCcHHHHHHHHHHHHcCCCCCCceEEEEeC
Confidence 999999998754211111111 123333444555443 4578776 56667788899999999986543 3344433
No 110
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=98.21 E-value=1.3e-05 Score=86.72 Aligned_cols=212 Identities=12% Similarity=0.016 Sum_probs=135.9
Q ss_pred CCceEEEeEEeec-CCCcchHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccCCh
Q 002371 23 KPEVLNVGAIFSF-GTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSA 101 (930)
Q Consensus 23 ~~~~I~IG~~~~l-~~~~G~~~~~a~~lAve~iN~~ggil~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~S 101 (930)
.....+||++.|. +..+......|++-++++. |+++.+ .++..++.........++.++|++||-....
T Consensus 57 ~~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~ 126 (332)
T 2hsg_A 57 SKKTTTVGVIIPDISNIFYAELARGIEDIATMY--------KYNIIL--SNSDQNQDKELHLLNNMLGKQVDGIIFMSGN 126 (332)
T ss_dssp TC-CCEEEEEEC--CCSHHHHHHHHHHHHHHHH--------TCEEEE--EECCSHHHHHHHHHHHTSCCSSCCEEECCSS
T ss_pred hCCCCEEEEEeCCCCCcHHHHHHHHHHHHHHHc--------CCEEEE--EeCCCChHHHHHHHHHHHhCCCcEEEEecCC
Confidence 3456789999985 4556667788888888773 566554 4666666666666677777788888753332
Q ss_pred hhHHHHHHhhhcCCCcEEEeecCCCCCCCCCCCeEEEccCChHHHHHHHHHHHHHcCCcEEEEEEecC---CcCcchHHH
Q 002371 102 VMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDD---DQGRNGVTA 178 (930)
Q Consensus 102 ~~~~av~~~~~~~~vp~is~~a~~~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~~~w~~vaii~~d~---~~g~~~~~~ 178 (930)
... .....+...++|++......+ +...+ ....++...+..+++++...|.++++++..+. .......+.
T Consensus 127 ~~~-~~~~~l~~~~iPvV~~~~~~~---~~~~~---~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~G 199 (332)
T 2hsg_A 127 VTE-EHVEELKKSPVPVVLAASIES---TNQIP---SVTIDYEQAAFDAVQSLIDSGHKNIAFVSGTLEEPINHAKKVKG 199 (332)
T ss_dssp CCH-HHHHHHTTSSSCEEEESCCCS---CTTSC---EEEECHHHHHHHHHHHHHTTTCSCEEEEESCTTSHHHHTTHHHH
T ss_pred CCH-HHHHHHHhCCCCEEEEccccC---CCCCC---EEEEChHHHHHHHHHHHHHCCCCEEEEEeCCcccCccHHHHHHH
Confidence 222 233445668999998754322 12223 34456667778888898889999999998653 335667889
Q ss_pred HHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcC--CceEEEEEcchhhHHHHHHHHHHcCCCCCc-eEEEEeC
Q 002371 179 LGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGMMDSG-YVWIATT 254 (930)
Q Consensus 179 ~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~--~~~viv~~~~~~~~~~~~~~a~~~g~~~~~-~~~i~~~ 254 (930)
|.+++++.|+++.....+... .+..+-...+.++.+. ++++|+ +.+...+..+++++++.|+..++ ...++.|
T Consensus 200 f~~al~~~g~~~~~~~~~~~~--~~~~~~~~~~~~ll~~~~~~~ai~-~~nd~~A~g~~~al~~~G~~vP~disvvg~D 275 (332)
T 2hsg_A 200 YKRALTESGLPVRDSYIVEGD--YTYDSGIEAVEKLLEEDEKPTAIF-VGTDEMALGVIHGAQDRGLNVPNDLEIIGFD 275 (332)
T ss_dssp HHHHHHTTTCCCCGGGEEECC--SSHHHHHHHHHHHHHSSSCCSEEE-ESSHHHHHHHHHHHHHTTCCHHHHCEEEEES
T ss_pred HHHHHHHcCCCCChheEEeCC--CCHHHHHHHHHHHHcCCCCCeEEE-ECChHHHHHHHHHHHHcCCCCCCCeEEEEEC
Confidence 999999999764311111111 1234444556666544 577766 55677788899999999986433 3344443
No 111
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*
Probab=98.20 E-value=8.1e-05 Score=80.88 Aligned_cols=208 Identities=5% Similarity=-0.037 Sum_probs=133.5
Q ss_pred CCceEEEeEEeec--CCCcchHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCC--CChHHHHHHHHHHHhcCcEEEEcc
Q 002371 23 KPEVLNVGAIFSF--GTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAK--FNGFLSIMGALQFMETDTLAIVGP 98 (930)
Q Consensus 23 ~~~~I~IG~~~~l--~~~~G~~~~~a~~lAve~iN~~ggil~g~~l~l~~~D~~--~~~~~a~~~a~~li~~~v~aiiGp 98 (930)
.....+||++.|- +..+-.....+++-++++. |+++.+...++. .++..-......++.++|++||-+
T Consensus 40 ~~~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~ 111 (342)
T 1jx6_A 40 TQRPIKISVVYPGQQVSDYWVRNIASFEKRLYKL--------NINYQLNQVFTRPNADIKQQSLSLMEALKSKSDYLIFT 111 (342)
T ss_dssp CSSCEEEEEEECCCSSCCHHHHHHHHHHHHHHHT--------TCCEEEEEEECCTTCCHHHHHHHHHHHHHTTCSEEEEC
T ss_pred cCCceEEEEEecCCcccHHHHHHHHHHHHHHHHc--------CCeEEEEecCCCCccCHHHHHHHHHHHHhcCCCEEEEe
Confidence 4557899999985 4555556677777776652 567777765665 677777777888888899998875
Q ss_pred CChhhHHHHHHhhhcCCCcEEEeecC-CCCCCCCCCCeEEEccCChHHHHHHHHHHHHHc-C-CcEEEEEEecCC-cCcc
Q 002371 99 QSAVMAHVLSHLANELQVPLLSFTAL-DPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYF-G-WGEVIAIFNDDD-QGRN 174 (930)
Q Consensus 99 ~~S~~~~av~~~~~~~~vp~is~~a~-~~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~~-~-w~~vaii~~d~~-~g~~ 174 (930)
..+.........+.+.++|+|..... .|.......+.+.....++...+..+++++... | .++++++..... ....
T Consensus 112 ~~~~~~~~~~~~~~~~~ip~V~~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~~Gg~~~I~~i~~~~~~~~~~ 191 (342)
T 1jx6_A 112 LDTTRHRKFVEHVLDSTNTKLILQNITTPVREWDKHQPFLYVGFDHAEGSRELATEFGKFFPKHTYYSVLYFSEGYISDV 191 (342)
T ss_dssp CSSSTTHHHHHHHHHHCSCEEEEETCCSCBGGGTTSCCSEEEECCHHHHHHHHHHHHHHHSCTTCEEEEECCSTTHHHHH
T ss_pred CChHhHHHHHHHHHHcCCCEEEEecCCCcccccccCCCceEEecCcHHHHHHHHHHHHHHcCCCceEEEEEcCCcchhhH
Confidence 54432233344455678999876332 221100112233445677777788888987775 7 999999975432 3345
Q ss_pred hHHHHHHHHHhcCc-EEEEEEecCCCCCCChhHHHHHHHHHhc--CCceEEEEEcchhhHHHHHHHHHHcCC
Q 002371 175 GVTALGDKLAEIRC-KISYKSALPPDQSVTETDVRNELVKVRM--MEARVIVVHGYSRTGLMVFDVAQRLGM 243 (930)
Q Consensus 175 ~~~~~~~~l~~~g~-~i~~~~~~~~~~~~~~~d~~~~l~~l~~--~~~~viv~~~~~~~~~~~~~~a~~~g~ 243 (930)
..+.|.+++++.|. +.... +... .+..+....+.++.+ .++++|+ +.+...+..+++++++.|+
T Consensus 192 R~~Gf~~~l~~~~~~~~~~~--~~~~--~~~~~~~~~~~~~l~~~~~~~ai~-~~nd~~A~g~~~al~~~g~ 258 (342)
T 1jx6_A 192 RGDTFIHQVNRDNNFELQSA--YYTK--ATKQSGYDAAKASLAKHPDVDFIY-ACSTDVALGAVDALAELGR 258 (342)
T ss_dssp HHHHHHHHHHHHHCCEEEEE--ECCC--SSHHHHHHHHHHHHHHCCCCSEEE-ESSHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhCCCcEEEEE--ecCC--CCHHHHHHHHHHHHHhCCCccEEE-ECCChhHHHHHHHHHHcCC
Confidence 57889999999886 33322 2222 224444445555544 3467765 4566678889999999997
No 112
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=98.19 E-value=1.6e-05 Score=84.13 Aligned_cols=209 Identities=8% Similarity=-0.036 Sum_probs=133.4
Q ss_pred eEEEeEEeec-----CCCcchHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccCC
Q 002371 26 VLNVGAIFSF-----GTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQS 100 (930)
Q Consensus 26 ~I~IG~~~~l-----~~~~G~~~~~a~~lAve~iN~~ggil~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~ 100 (930)
.-+||++.|- +..+-.....|++-++++. |+++. +.++..++.........+++++|++||-...
T Consensus 4 s~~Ig~i~~~~~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 73 (287)
T 3bbl_A 4 SFMIGYSWTQTEPGQVNHILDQFLSSMVREAGAV--------NYFVL--PFPFSEDRSQIDIYRDLIRSGNVDGFVLSSI 73 (287)
T ss_dssp CCEEEECCCCCCTTCSCCTHHHHHHHHHHHHHHT--------TCEEE--ECCCCSSTTCCHHHHHHHHTTCCSEEEECSC
T ss_pred eeEEEEEecccccccCChhHHHHHHHHHHHHHHc--------CCEEE--EEeCCCchHHHHHHHHHHHcCCCCEEEEeec
Confidence 4579999985 4555567778888877762 56654 4555555555555666777788998885332
Q ss_pred hhhHHHHHHhhhcCCCcEEEeecCCCCCCCCCCCeEEEccCChHHHHHHHHHHHHHcCCcEEEEEEecC--CcCcchHHH
Q 002371 101 AVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDD--DQGRNGVTA 178 (930)
Q Consensus 101 S~~~~av~~~~~~~~vp~is~~a~~~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~~~w~~vaii~~d~--~~g~~~~~~ 178 (930)
.... .....+...++|+|......+ +...+ ....++...+..+++++...|.++++++.... .......+.
T Consensus 74 ~~~~-~~~~~l~~~~iPvV~~~~~~~---~~~~~---~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~G 146 (287)
T 3bbl_A 74 NYND-PRVQFLLKQKFPFVAFGRSNP---DWDFA---WVDIDGTAGTRQAVEYLIGRGHRRIAILAWPEDSRVGNDRLQG 146 (287)
T ss_dssp CTTC-HHHHHHHHTTCCEEEESCCST---TCCCC---EEEECHHHHHHHHHHHHHHHTCCCEEEEECCTTCHHHHHHHHH
T ss_pred CCCc-HHHHHHHhcCCCEEEECCcCC---CCCCC---EEEeccHHHHHHHHHHHHHCCCCeEEEEeCCcccccHHHHHHH
Confidence 2222 233445568999998754322 12222 34466777788888988888999999998543 234566788
Q ss_pred HHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhc-C---CceEEEEEcchhhHHHHHHHHHHcCCCCCc-eEEEEe
Q 002371 179 LGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRM-M---EARVIVVHGYSRTGLMVFDVAQRLGMMDSG-YVWIAT 253 (930)
Q Consensus 179 ~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~-~---~~~viv~~~~~~~~~~~~~~a~~~g~~~~~-~~~i~~ 253 (930)
|.+++++.|+++.....+... .+..+-...+.++.+ . ++++|+. .+...+..+++++++.|+..++ ...++.
T Consensus 147 f~~~l~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~ai~~-~~d~~a~g~~~al~~~G~~vP~di~vig~ 223 (287)
T 3bbl_A 147 YLEAMQTAQLPIETGYILRGE--GTFEVGRAMTLHLLDLSPERRPTAIMT-LNDTMAIGAMAAARERGLTIGTDLAIIGF 223 (287)
T ss_dssp HHHHHHHTTCCCCGGGEEECC--SSHHHHHHHHHHHHTSCTTTSCSEEEE-SSHHHHHHHHHHHHHTTCCBTTTBEEEEE
T ss_pred HHHHHHHcCCCCChhhEEeCC--CCHHHHHHHHHHHHhhCCCCCCcEEEE-CCcHHHHHHHHHHHHcCCCCCCCEEEEEE
Confidence 999999999765321111111 124444455666654 3 5677664 5667788899999999986443 344444
Q ss_pred C
Q 002371 254 T 254 (930)
Q Consensus 254 ~ 254 (930)
|
T Consensus 224 d 224 (287)
T 3bbl_A 224 D 224 (287)
T ss_dssp S
T ss_pred C
Confidence 4
No 113
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=98.17 E-value=4.4e-05 Score=82.89 Aligned_cols=212 Identities=9% Similarity=0.011 Sum_probs=141.4
Q ss_pred CceEEEeEEeec---CCCcchHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccCC
Q 002371 24 PEVLNVGAIFSF---GTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQS 100 (930)
Q Consensus 24 ~~~I~IG~~~~l---~~~~G~~~~~a~~lAve~iN~~ggil~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~ 100 (930)
...-+||+++|- +..+-.....+++-++++. |+++ .+.++..++..-.+....++.++|++||-...
T Consensus 59 ~~~~~Igvi~~~~~~~~~~~~~~~~gi~~~a~~~--------g~~~--~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 128 (338)
T 3dbi_A 59 KSTQTLGLVVTNTLYHGIYFSELLFHAARMAEEK--------GRQL--LLADGKHSAEEERQAIQYLLDLRCDAIMIYPR 128 (338)
T ss_dssp -CCSEEEEEECTTTTSTTHHHHHHHHHHHHHHHT--------TCEE--EEEECTTSHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred CCCCEEEEEecCCcccChhHHHHHHHHHHHHHHC--------CCEE--EEEeCCCChHHHHHHHHHHHhCCCCEEEEeCC
Confidence 345789999996 3445556677777777662 5655 45567778887777788888889998885443
Q ss_pred hhhHHHHHHhhhcCCCcEEEeecCCCCCCCCCCCeEEEccCChHHHHHHHHHHHHHcCCcEEEEEEec--CCcCcchHHH
Q 002371 101 AVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFND--DDQGRNGVTA 178 (930)
Q Consensus 101 S~~~~av~~~~~~~~vp~is~~a~~~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~~~w~~vaii~~d--~~~g~~~~~~ 178 (930)
......+...+...++|++......+ +...+ ....++...+..+++++...|.++++++... ........+.
T Consensus 129 ~~~~~~~~~~~~~~~iPvV~~~~~~~---~~~~~---~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~G 202 (338)
T 3dbi_A 129 FLSVDEIDDIIDAHSQPIMVLNRRLR---KNSSH---SVWCDHKQTSFNAVAELINAGHQEIAFLTGSMDSPTSIERLAG 202 (338)
T ss_dssp SSCHHHHHHHHHHCSSCEEEESSCCS---SSGGG---EECBCHHHHHHHHHHHHHHTTCCSEEEECCCTTCHHHHHHHHH
T ss_pred CCChHHHHHHHHcCCCCEEEEcCCCC---CCCCC---EEEEChHHHHHHHHHHHHHCCCCEEEEEeCCCCCccHHHHHHH
Confidence 33345567788888999998754332 12222 3556777778888899989999999999754 3334556788
Q ss_pred HHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhc--CCceEEEEEcchhhHHHHHHHHHHcCCCCCc-eEEEEeC
Q 002371 179 LGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRM--MEARVIVVHGYSRTGLMVFDVAQRLGMMDSG-YVWIATT 254 (930)
Q Consensus 179 ~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~--~~~~viv~~~~~~~~~~~~~~a~~~g~~~~~-~~~i~~~ 254 (930)
|.+++++.|+.+.....+... .+..+-...+.++.+ .++++|+ +.+...+..+++++++.|+..++ ...++.|
T Consensus 203 f~~al~~~g~~~~~~~~~~~~--~~~~~~~~~~~~ll~~~~~~~ai~-~~nd~~A~g~~~al~~~G~~vP~di~vvg~D 278 (338)
T 3dbi_A 203 YKDALAQHGIALNEKLIANGK--WTPASGAEGVEMLLERGAKFSALV-ASNDDMAIGAMKALHERGVAVPEQVSVIGFD 278 (338)
T ss_dssp HHHHHHHTTCCCCGGGEECCC--SSHHHHHHHHHHHHHTTCCCSEEE-ESSHHHHHHHHHHHHHTTCCTTTTCEEEEES
T ss_pred HHHHHHHCCCCCCcceEEeCC--CCHHHHHHHHHHHHcCCCCCeEEE-ECChHHHHHHHHHHHHcCCCCCCCeEEEEEC
Confidence 999999999865322112222 224444455555543 4567765 45667788899999999987544 3344444
No 114
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=98.17 E-value=0.00011 Score=78.52 Aligned_cols=200 Identities=9% Similarity=0.007 Sum_probs=134.5
Q ss_pred eEEEeEEeec-CCCcchHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEc-cCChhh
Q 002371 26 VLNVGAIFSF-GTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVG-PQSAVM 103 (930)
Q Consensus 26 ~I~IG~~~~l-~~~~G~~~~~a~~lAve~iN~~ggil~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiG-p~~S~~ 103 (930)
..+||+++|- +..+-.....+++-++++. |+++. +.++..++..-......++.+++++||- |.....
T Consensus 2 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~--~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~ 71 (313)
T 3m9w_A 2 EVKIGMAIDDLRLERWQKDRDIFVKKAESL--------GAKVF--VQSANGNEETQMSQIENMINRGVDVLVIIPYNGQV 71 (313)
T ss_dssp -CEEEEEESCCSSSTTHHHHHHHHHHHHHT--------SCEEE--EEECTTCHHHHHHHHHHHHHTTCSEEEEECSSTTS
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHHHc--------CCEEE--EECCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhh
Confidence 3579999995 4556667788888888873 55544 5567778888888888899888888874 333333
Q ss_pred HHHHHHhhhcCCCcEEEeecCCCCCCCCCCCeEEEccCChHHHHHHHHHHHH-HcCCcEEEEEEecC--CcCcchHHHHH
Q 002371 104 AHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVS-YFGWGEVIAIFNDD--DQGRNGVTALG 180 (930)
Q Consensus 104 ~~av~~~~~~~~vp~is~~a~~~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~-~~~w~~vaii~~d~--~~g~~~~~~~~ 180 (930)
.......+.+.++|+|......+. ... ......++...+..+++++. ..|.++++++..+. .......+.|.
T Consensus 72 ~~~~~~~~~~~~iPvV~~~~~~~~---~~~--~~~V~~D~~~~g~~a~~~L~~~~G~~~i~~i~g~~~~~~~~~R~~Gf~ 146 (313)
T 3m9w_A 72 LSNVVKEAKQEGIKVLAYDRMIND---ADI--DFYISFDNEKVGELQAKALVDIVPQGNYFLMGGSPVDNNAKLFRAGQM 146 (313)
T ss_dssp CHHHHHHHHTTTCEEEEESSCCTT---SCC--SEEEEECHHHHHHHHHHHHHHHCSSEEEEEEESCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHCCCeEEEECCcCCC---CCc--eEEEecCHHHHHHHHHHHHHHhCCCCcEEEEECCCCCccHHHHHHHHH
Confidence 344566677889999987654322 222 13345577777888888877 89999999997543 33444578889
Q ss_pred HHHHhc----CcEEEEEEecCCCCCCChhHHHHHHHHHhc---CCceEEEEEcchhhHHHHHHHHHHcCCC
Q 002371 181 DKLAEI----RCKISYKSALPPDQSVTETDVRNELVKVRM---MEARVIVVHGYSRTGLMVFDVAQRLGMM 244 (930)
Q Consensus 181 ~~l~~~----g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~---~~~~viv~~~~~~~~~~~~~~a~~~g~~ 244 (930)
+++++. +++++.... ... .+.......+.++.+ .++++|+ +.+...+..+++++++.|+.
T Consensus 147 ~~l~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~l~~~~~~~~ai~-~~~d~~a~g~~~al~~~G~~ 213 (313)
T 3m9w_A 147 KVLKPYVDSGKIKVVGDQW-VDG--WLPENALKIMENALTANNNKIDAVV-ASNDATAGGAIQALSAQGLS 213 (313)
T ss_dssp HHHHHHHHTTSEEEEEEEE-CGG--GCHHHHHHHHHHHHHHTTTCCCEEE-ESSHHHHHHHHHHHHTTTCT
T ss_pred HHHHhhccCCCEEEEeecc-CCC--cCHHHHHHHHHHHHHhCCCCeeEEE-ECCCchHHHHHHHHHHcCCC
Confidence 999887 677654432 211 123444444555543 3567654 45666788899999999985
No 115
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=98.16 E-value=6.8e-05 Score=78.38 Aligned_cols=207 Identities=9% Similarity=-0.067 Sum_probs=137.8
Q ss_pred EEEeEEeecC-CCcchHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccCChhhHH
Q 002371 27 LNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVMAH 105 (930)
Q Consensus 27 I~IG~~~~l~-~~~G~~~~~a~~lAve~iN~~ggil~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~S~~~~ 105 (930)
-+||+++|-. ..+-.....+++-++++. |+++.+ .++..++..-......++++++++||-........
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~ 72 (272)
T 3o74_A 3 RTLGFILPDLENPSYARIAKQLEQGARAR--------GYQLLI--ASSDDQPDSERQLQQLFRARRCDALFVASCLPPED 72 (272)
T ss_dssp CEEEEEESCTTCHHHHHHHHHHHHHHHHT--------TCEEEE--EECTTCHHHHHHHHHHHHHTTCSEEEECCCCCSSC
T ss_pred eEEEEEeCCCcChhHHHHHHHHHHHHHHC--------CCEEEE--EeCCCCHHHHHHHHHHHHHcCCCEEEEecCccccH
Confidence 3699999874 444456677777777662 565554 56666888777788888888888887533321123
Q ss_pred HHHHhhhcCCCcEEEeecCCCCCCCCCCCeEEEccCChHHHHHHHHHHHHHcCCcEEEEEEecC--CcCcchHHHHHHHH
Q 002371 106 VLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDD--DQGRNGVTALGDKL 183 (930)
Q Consensus 106 av~~~~~~~~vp~is~~a~~~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~~~w~~vaii~~d~--~~g~~~~~~~~~~l 183 (930)
.....+.+.++|+|......+ +... .....++...+..+++++...|.++++++..+. ...+...+.|.+++
T Consensus 73 ~~~~~~~~~~iPvV~~~~~~~---~~~~---~~V~~d~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l 146 (272)
T 3o74_A 73 DSYRELQDKGLPVIAIDRRLD---PAHF---CSVISDDRDASRQLAASLLSSAPRSIALIGARPELSVSQARAGGFDEAL 146 (272)
T ss_dssp CHHHHHHHTTCCEEEESSCCC---TTTC---EEEEECHHHHHHHHHHHHHTTCCSEEEEEEECTTSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCEEEEccCCC---cccc---CEEEEchHHHHHHHHHHHHHCCCcEEEEEecCCCCccHHHHHHHHHHHH
Confidence 344566778999998754332 1222 334567777788889999999999999998653 34456678999999
Q ss_pred HhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcC---CceEEEEEcchhhHHHHHHHHHHcCCCCCceEEEEeC
Q 002371 184 AEIRCKISYKSALPPDQSVTETDVRNELVKVRMM---EARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATT 254 (930)
Q Consensus 184 ~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~---~~~viv~~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~ 254 (930)
++.|+++.....-... .++....+.++.+. ++++|+. .+...+..+++++++.|+.+.+...++.|
T Consensus 147 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~ai~~-~~d~~a~g~~~al~~~g~vp~di~vvg~d 215 (272)
T 3o74_A 147 QGYTGEVRRYQGEAFS----RECGQRLMQQLIDDLGGLPDALVT-TSYVLLQGVFDTLQARPVDSRQLQLGTFG 215 (272)
T ss_dssp TTCCSEEEEEEESSSS----HHHHHHHHHHHHHHHTSCCSEEEE-SSHHHHHHHHHHHHTSCGGGCCCEEEEES
T ss_pred HHcCCChheeecCCCC----HHHHHHHHHHHHhcCCCCCcEEEE-eCchHHHHHHHHHHHcCCCccceEEEEeC
Confidence 9999886544332222 44444555555432 4777654 56677888999999999833344455544
No 116
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=98.14 E-value=4e-05 Score=81.16 Aligned_cols=212 Identities=11% Similarity=0.028 Sum_probs=137.3
Q ss_pred CceEEEeEEeec------CCCcchHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEc
Q 002371 24 PEVLNVGAIFSF------GTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVG 97 (930)
Q Consensus 24 ~~~I~IG~~~~l------~~~~G~~~~~a~~lAve~iN~~ggil~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiG 97 (930)
...-+||+++|- +..+-.....+++-++++. |+++. +.++..++..-......+.++++++||-
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~--~~~~~~~~~~~~~~~~~~~~~~vdgiIi 75 (292)
T 3k4h_A 6 QTTKTLGLVMPSSASKAFQNPFFPEVIRGISSFAHVE--------GYALY--MSTGETEEEIFNGVVKMVQGRQIGGIIL 75 (292)
T ss_dssp -CCCEEEEECSSCHHHHTTSTHHHHHHHHHHHHHHHT--------TCEEE--ECCCCSHHHHHHHHHHHHHTTCCCEEEE
T ss_pred CCCCEEEEEecCCccccccCHHHHHHHHHHHHHHHHc--------CCEEE--EEeCCCCHHHHHHHHHHHHcCCCCEEEE
Confidence 345789999997 3445556677777777662 55554 5666666666566666677778988874
Q ss_pred cCChhhHHHHHHhhhcCCCcEEEeecCCCCCCCCCCCeEEEccCChHHHHHHHHHHHHHcCCcEEEEEEecCC--cCcch
Q 002371 98 PQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD--QGRNG 175 (930)
Q Consensus 98 p~~S~~~~av~~~~~~~~vp~is~~a~~~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~~~w~~vaii~~d~~--~g~~~ 175 (930)
...... ......+.+.++|+|......+.. . .+.....++...+..+++++...|.++++++..... .....
T Consensus 76 ~~~~~~-~~~~~~l~~~~iPvV~~~~~~~~~--~---~~~~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R 149 (292)
T 3k4h_A 76 LYSREN-DRIIQYLHEQNFPFVLIGKPYDRK--D---EITYVDNDNYTAAREVAEYLISLGHKQIAFIGGGSDLLVTRDR 149 (292)
T ss_dssp SCCBTT-CHHHHHHHHTTCCEEEESCCSSCT--T---TSCEEECCHHHHHHHHHHHHHHTTCCCEEEEESCTTBHHHHHH
T ss_pred eCCCCC-hHHHHHHHHCCCCEEEECCCCCCC--C---CCCEEEECcHHHHHHHHHHHHHCCCceEEEEeCcccchhHHHH
Confidence 322222 244566777899999875443221 1 133455677777888999998899999999985432 34556
Q ss_pred HHHHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcC--CceEEEEEcchhhHHHHHHHHHHcCCCCCc-eEEEE
Q 002371 176 VTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGMMDSG-YVWIA 252 (930)
Q Consensus 176 ~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~--~~~viv~~~~~~~~~~~~~~a~~~g~~~~~-~~~i~ 252 (930)
.+.|.+++++.|+.+.....+... .+..+....+.++.+. ++++|+ +.+...+..+++++++.|+..++ ...++
T Consensus 150 ~~gf~~~l~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di~vig 226 (292)
T 3k4h_A 150 LAGMSDALKLADIVLPKEYILHFD--FSRESGQQAVEELMGLQQPPTAIM-ATDDLIGLGVLSALSKKGFVVPKDVSIVS 226 (292)
T ss_dssp HHHHHHHHHHTTCCCCGGGEEECC--SSHHHHHHHHHHHHTSSSCCSEEE-ESSHHHHHHHHHHHHHTTCCTTTTCEEEE
T ss_pred HHHHHHHHHHcCCCCChheEEecC--CCHHHHHHHHHHHHcCCCCCcEEE-EcChHHHHHHHHHHHHhCCCCCCeEEEEE
Confidence 789999999999864321111111 2245555666666654 566665 55667788899999999986443 33444
Q ss_pred eC
Q 002371 253 TT 254 (930)
Q Consensus 253 ~~ 254 (930)
.|
T Consensus 227 ~d 228 (292)
T 3k4h_A 227 FN 228 (292)
T ss_dssp ES
T ss_pred ec
Confidence 33
No 117
>3ctp_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens}
Probab=98.13 E-value=1.6e-05 Score=86.04 Aligned_cols=201 Identities=8% Similarity=0.005 Sum_probs=130.7
Q ss_pred CceEEEeEEeecC-CCcchHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccCChh
Q 002371 24 PEVLNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAV 102 (930)
Q Consensus 24 ~~~I~IG~~~~l~-~~~G~~~~~a~~lAve~iN~~ggil~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~S~ 102 (930)
....+||++.|.. ..+......|++.++++ .|+++. +.++..++.........++.++|++|| .....
T Consensus 58 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~~~~--------~g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdgiI-~~~~~ 126 (330)
T 3ctp_A 58 KNSKTIGLMVPNISNPFFNQMASVIEEYAKN--------KGYTLF--LCNTDDDKEKEKTYLEVLQSHRVAGII-ASRSQ 126 (330)
T ss_dssp --CCEEEEEESCTTSHHHHHHHHHHHHHHHH--------TTCEEE--EEECTTCHHHHHHHHHHHHHTTCSEEE-EETCC
T ss_pred CCCCEEEEEeCCCCCcHHHHHHHHHHHHHHH--------CCCEEE--EEeCCCChHHHHHHHHHHHhCCCCEEE-ECCCC
Confidence 3467899999863 44445667777777765 256655 456667887777778888888999998 43322
Q ss_pred hHHHHHHhhhcCCCcEEEeecCCCCCCCCCCCeEEEccCChHHHHHHHHHHHHHcCCcEEEEEEecC--CcCcchHHHHH
Q 002371 103 MAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDD--DQGRNGVTALG 180 (930)
Q Consensus 103 ~~~av~~~~~~~~vp~is~~a~~~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~~~w~~vaii~~d~--~~g~~~~~~~~ 180 (930)
.. +.+...++|++......+. ..+ ....++...+..+++++...|.+++++|..+. ..+....+.|.
T Consensus 127 ~~----~~l~~~~iPvV~~~~~~~~----~~~---~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~ 195 (330)
T 3ctp_A 127 CE----DEYANIDIPVVAFENHILD----NII---TISSDNYNGGRMAFDHLYEKGCRKILHIKGPEVFEATELRYKGFL 195 (330)
T ss_dssp CS----GGGTTCCSCEEEESSCCCT----TSC---EEEECHHHHHHHHHHHHHHTTCCSEEEEECCTTCHHHHHHHHHHH
T ss_pred CH----HHHHhcCCCEEEEeccCCC----CCC---EEEeCHHHHHHHHHHHHHHCCCCeEEEEeCCccCccHHHHHHHHH
Confidence 21 2345779999987554321 233 34456666778888988888999999998653 24556678999
Q ss_pred HHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhc-CCceEEEEEcchhhHHHHHHHHHHcCCCCCceEE
Q 002371 181 DKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRM-MEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVW 250 (930)
Q Consensus 181 ~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~-~~~~viv~~~~~~~~~~~~~~a~~~g~~~~~~~~ 250 (930)
+++++.|+.+. ...+... .+..+-...+.++.+ .++++|+. .+...+..+++++++.|+..++-+-
T Consensus 196 ~al~~~g~~~~-~~~~~~~--~~~~~~~~~~~~ll~~~~~~ai~~-~~d~~A~g~~~al~~~G~~vP~dis 262 (330)
T 3ctp_A 196 DGARAKDLEID-FIEFQHD--FQVKMLEEDINSMKDIVNYDGIFV-FNDIAAATVMRALKKRGVSIPQEVQ 262 (330)
T ss_dssp HHHHHTTCCCE-EEECSSS--CCGGGGGCCCTTGGGGGGSSEEEE-SSHHHHHHHHHHHHHTTCCTTTTCE
T ss_pred HHHHHcCCCcc-eeEEcCC--CCHHHHHHHHHHHhcCCCCcEEEE-CCHHHHHHHHHHHHHcCCCCCCCeE
Confidence 99999998765 3333222 112222222333333 35788665 4566788899999999987544333
No 118
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=98.07 E-value=0.00012 Score=79.55 Aligned_cols=211 Identities=11% Similarity=0.001 Sum_probs=134.4
Q ss_pred ceEEEeEEeecC-CCcchHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccCChhh
Q 002371 25 EVLNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVM 103 (930)
Q Consensus 25 ~~I~IG~~~~l~-~~~G~~~~~a~~lAve~iN~~ggil~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~S~~ 103 (930)
..-+||++.|.. ..+......|++-++++. |+++.+ .++..++.........++.++|++||-......
T Consensus 57 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~ 126 (340)
T 1qpz_A 57 HTKSIGLLATSSEAAYFAEIIEAVEKNCFQK--------GYTLIL--GNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEYP 126 (340)
T ss_dssp CCSEEEEEESCSCSHHHHHHHHHHHHHHHHT--------TCEEEE--EECTTCHHHHHHHHHHHHHTTCSEEEECCSCCC
T ss_pred CCCEEEEEeCCCCChHHHHHHHHHHHHHHHc--------CCEEEE--EeCCCCHHHHHHHHHHHHcCCCCEEEEeCCCCC
Confidence 456899999863 444456677777777662 566654 567777777777777888889998885322211
Q ss_pred HHHHHHhhhc-CCCcEEEeecCCCCCCCCCCCeEEEccCChHHHHHHHHHHHHHcCCcEEEEEEecC--CcCcchHHHHH
Q 002371 104 AHVLSHLANE-LQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDD--DQGRNGVTALG 180 (930)
Q Consensus 104 ~~av~~~~~~-~~vp~is~~a~~~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~~~w~~vaii~~d~--~~g~~~~~~~~ 180 (930)
. .......+ .++|++......+. . ++......++...+..++++|...|.++++++.... ..+....+.|.
T Consensus 127 ~-~~~~~l~~~~~iPvV~~~~~~~~---~--~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~g~~~~~~~~~R~~Gf~ 200 (340)
T 1qpz_A 127 E-PLLAMLEEYRHIPMVVMDWGEAK---A--DFTDAVIDNAFEGGYMAGRYLIERGHREIGVIPGPLERNTGAGRLAGFM 200 (340)
T ss_dssp H-HHHHHHHTTTTSCEEEEEESSCC---C--SSSEEEECCHHHHHHHHHHHHHHHTCCCEEEECCCTTSHHHHHHHHHHH
T ss_pred h-HHHHHHHhhCCCCEEEEecccCC---C--CCCCEEEECHHHHHHHHHHHHHHCCCCEEEEEeCCCccccHHHHHHHHH
Confidence 1 22333333 69999987654321 1 122345567777778888888888999999997542 23456678899
Q ss_pred HHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhc--CCceEEEEEcchhhHHHHHHHHHHcCCCCCce-EEEEeC
Q 002371 181 DKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRM--MEARVIVVHGYSRTGLMVFDVAQRLGMMDSGY-VWIATT 254 (930)
Q Consensus 181 ~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~--~~~~viv~~~~~~~~~~~~~~a~~~g~~~~~~-~~i~~~ 254 (930)
+++++.|+.+.....+... .+..+-...+.++.+ .++++|+. .+...+..+++++++.|+..++- ..++.|
T Consensus 201 ~al~~~g~~~~~~~~~~~~--~~~~~~~~~~~~ll~~~~~~~ai~~-~nd~~A~g~~~al~~~G~~vP~disvig~D 274 (340)
T 1qpz_A 201 KAMEEAMIKVPESWIVQGD--FEPESGYRAMQQILSQPHRPTAVFC-GGDIMAMGALCAADEMGLRVPQDVSLIGYD 274 (340)
T ss_dssp HHHHHTTCCCCGGGBCCCC--SSHHHHHHHHHHHHTSSSCCSEEEE-SSHHHHHHHHHHHHHTTCCTTTTCEEEEEE
T ss_pred HHHHHCCCCCChhheEeCC--CCHHHHHHHHHHHHcCCCCCcEEEE-CCHHHHHHHHHHHHHcCCCCCCCeEEEeEC
Confidence 9999999765321112211 223444455666654 35777664 56667888999999999875443 334433
No 119
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=98.00 E-value=2.2e-05 Score=82.62 Aligned_cols=205 Identities=9% Similarity=0.004 Sum_probs=130.7
Q ss_pred ceEEEeEEeec-CCCcchHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccCChhh
Q 002371 25 EVLNVGAIFSF-GTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVM 103 (930)
Q Consensus 25 ~~I~IG~~~~l-~~~~G~~~~~a~~lAve~iN~~ggil~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~S~~ 103 (930)
..-+||+++|- +..+-.....+++-++++. |+++.+. ++. ++..-......++++++++|| -.....
T Consensus 4 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~~--~~~-~~~~~~~~~~~l~~~~vdgiI-~~~~~~ 71 (280)
T 3gyb_A 4 RTQLIAVLIDDYSNPWFIDLIQSLSDVLTPK--------GYRLSVI--DSL-TSQAGTDPITSALSMRPDGII-IAQDIP 71 (280)
T ss_dssp CCCEEEEEESCTTSGGGHHHHHHHHHHHGGG--------TCEEEEE--CSS-SSCSSSCHHHHHHTTCCSEEE-EESCC-
T ss_pred ccCEEEEEeCCCCChHHHHHHHHHHHHHHHC--------CCEEEEE--eCC-CchHHHHHHHHHHhCCCCEEE-ecCCCC
Confidence 35689999986 3455566777877776663 5655544 444 444445566677778999988 332222
Q ss_pred HHHHHHhhhcCCCcEEEeecCCCCCCCCCCCeEEEccCChHHHHHHHHHHHHHcCCcEEEEEEecCCcCcchHHHHHHHH
Q 002371 104 AHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKL 183 (930)
Q Consensus 104 ~~av~~~~~~~~vp~is~~a~~~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~~~w~~vaii~~d~~~g~~~~~~~~~~l 183 (930)
...+.. .++|+|......+ .+...++ ...++...+..+++++...|.++++++...........+.|.+++
T Consensus 72 ~~~~~~----~~iPvV~~~~~~~--~~~~~~~---V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~R~~gf~~~l 142 (280)
T 3gyb_A 72 DFTVPD----SLPPFVIAGTRIT--QASTHDS---VANDDFRGAEIATKHLIDLGHTHIAHLRVGSGAGLRRFESFEATM 142 (280)
T ss_dssp -----------CCCEEEESCCCS--SSCSTTE---EEECHHHHHHHHHHHHHHTTCCSEEEECCSSHHHHHHHHHHHHHH
T ss_pred hhhHhh----cCCCEEEECCCCC--CCCCCCE---EEechHHHHHHHHHHHHHCCCCeEEEEeCCCchHHHHHHHHHHHH
Confidence 222222 8999998765432 1222333 456677778889999988999999999876544566678999999
Q ss_pred HhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcC--CceEEEEEcchhhHHHHHHHHHHcCCCCCc-eEEEEeC
Q 002371 184 AEIRCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGMMDSG-YVWIATT 254 (930)
Q Consensus 184 ~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~--~~~viv~~~~~~~~~~~~~~a~~~g~~~~~-~~~i~~~ 254 (930)
++.|+.+.... +... .+..+....+.++.+. ++++|+ +.+...+..+++++++.|+..++ ...++.+
T Consensus 143 ~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di~vvg~d 212 (280)
T 3gyb_A 143 RAHGLEPLSND-YLGP--AVEHAGYTETLALLKEHPEVTAIF-SSNDITAIGALGAARELGLRVPEDLSIIGYD 212 (280)
T ss_dssp HHTTCCCEECC-CCSC--CCHHHHHHHHHHHHHHCTTCCEEE-ESSHHHHHHHHHHHHHHTCCTTTTCEEEEES
T ss_pred HHcCcCCCccc-ccCC--CCHHHHHHHHHHHHhCCCCCCEEE-ECChHHHHHHHHHHHHcCCCCCCeeEEEEEC
Confidence 99998766433 3222 2344445555555443 467765 45667788999999999987443 3344444
No 120
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=97.98 E-value=0.00026 Score=74.71 Aligned_cols=209 Identities=12% Similarity=0.060 Sum_probs=131.7
Q ss_pred CCceEEEeEEeecCCCcchHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccCChh
Q 002371 23 KPEVLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAV 102 (930)
Q Consensus 23 ~~~~I~IG~~~~l~~~~G~~~~~a~~lAve~iN~~ggil~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~S~ 102 (930)
....-+||++++++..+-.....+++-++++. |+++.+...+...+ -......+++++|++||-.....
T Consensus 9 ~~~~~~Igvi~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~~~~~~~~~---~~~~~~~l~~~~vdgiIi~~~~~ 77 (289)
T 3k9c_A 9 QASSRLLGVVFELQQPFHGDLVEQIYAAATRR--------GYDVMLSAVAPSRA---EKVAVQALMRERCEAAILLGTRF 77 (289)
T ss_dssp ----CEEEEEEETTCHHHHHHHHHHHHHHHHT--------TCEEEEEEEBTTBC---HHHHHHHHTTTTEEEEEEETCCC
T ss_pred cCCCCEEEEEEecCCchHHHHHHHHHHHHHHC--------CCEEEEEeCCCCHH---HHHHHHHHHhCCCCEEEEECCCC
Confidence 44567899999555555556677777777662 57776655554333 34556677777898888433222
Q ss_pred hHHHHHHhhhcCCCcEEEeecCCCCCCCCCCCeEEEccCChHHHHHHHHHHHHHcCCcEEEEEEecCC-cCcchHHHHHH
Q 002371 103 MAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD-QGRNGVTALGD 181 (930)
Q Consensus 103 ~~~av~~~~~~~~vp~is~~a~~~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~~~w~~vaii~~d~~-~g~~~~~~~~~ 181 (930)
.... ...+.+ ++|+|......+ +.. +-....++...+..+++++...|.++++++..... ......+.|.+
T Consensus 78 ~~~~-~~~~~~-~iPvV~i~~~~~---~~~---~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~R~~Gf~~ 149 (289)
T 3k9c_A 78 DTDE-LGALAD-RVPALVVARASG---LPG---VGAVRGDDVAGITLAVDHLTELGHRNIAHIDGADAPGGADRRAGFLA 149 (289)
T ss_dssp CHHH-HHHHHT-TSCEEEESSCCS---STT---SEEEEECHHHHHHHHHHHHHHTTCCSEEEECCTTSTTHHHHHHHHHH
T ss_pred CHHH-HHHHHc-CCCEEEEcCCCC---CCC---CCEEEeChHHHHHHHHHHHHHCCCCcEEEEeCCCCccHHHHHHHHHH
Confidence 2233 334445 999998754332 122 23455677777888899998899999999986543 33456789999
Q ss_pred HHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcC--CceEEEEEcchhhHHHHHHHHHHcCCCCCc-eEEEEeC
Q 002371 182 KLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGMMDSG-YVWIATT 254 (930)
Q Consensus 182 ~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~--~~~viv~~~~~~~~~~~~~~a~~~g~~~~~-~~~i~~~ 254 (930)
++++.|+.+... .+... .+..+-...+.++.+. ++++|+ +.+...+..+++++++.|+..++ ...++.|
T Consensus 150 al~~~g~~~~~~-~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~A~g~~~al~~~g~~vP~di~vig~D 221 (289)
T 3k9c_A 150 AMDRHGLSASAT-VVTGG--TTETEGAEGMHTLLEMPTPPTAVV-AFNDRCATGVLDLLVRSGRDVPADISVVGYD 221 (289)
T ss_dssp HHHHTTCGGGEE-EECCC--SSHHHHHHHHHHHHTSSSCCSEEE-ESSHHHHHHHHHHHHHTTCCTTTTCEEEEEE
T ss_pred HHHHCCCCCCcc-EEECC--CCHHHHHHHHHHHHcCCCCCCEEE-ECChHHHHHHHHHHHHcCCCCCCceEEEEEC
Confidence 999999864222 12222 2345555566666553 567654 55667788899999999987544 3344433
No 121
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=97.98 E-value=4.5e-05 Score=80.74 Aligned_cols=211 Identities=11% Similarity=0.016 Sum_probs=135.3
Q ss_pred CceEEEeEEeecC-CCcchHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccCChh
Q 002371 24 PEVLNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAV 102 (930)
Q Consensus 24 ~~~I~IG~~~~l~-~~~G~~~~~a~~lAve~iN~~ggil~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~S~ 102 (930)
...-+||+++|-. ..+-.....+++-++++. |+++. +.++..++.........++++++++||-.....
T Consensus 6 ~~~~~Igvv~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~ 75 (291)
T 3egc_A 6 KRSNVVGLIVSDIENVFFAEVASGVESEARHK--------GYSVL--LANTAEDIVREREAVGQFFERRVDGLILAPSEG 75 (291)
T ss_dssp -CCCEEEEEESCTTSHHHHHHHHHHHHHHHHT--------TCEEE--EEECTTCHHHHHHHHHHHHHTTCSEEEECCCSS
T ss_pred CCCcEEEEEECCCcchHHHHHHHHHHHHHHHC--------CCEEE--EEeCCCCHHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence 3457899999864 334455677777777662 55554 556777888777788888888998888533332
Q ss_pred hHHHHHHhhhcCCCcEEEeecCCCCCCCCCCCeEEEccCChHHHHHHHHHHHHHcCCcEEEEEEecC--CcCcchHHHHH
Q 002371 103 MAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDD--DQGRNGVTALG 180 (930)
Q Consensus 103 ~~~av~~~~~~~~vp~is~~a~~~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~~~w~~vaii~~d~--~~g~~~~~~~~ 180 (930)
.......+.+.++|+|......+ +.. +.....++...+..+++++...|.++++++.... .......+.|.
T Consensus 76 -~~~~~~~~~~~~iPvV~~~~~~~---~~~---~~~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~ 148 (291)
T 3egc_A 76 -EHDYLRTELPKTFPIVAVNRELR---IPG---CGAVLSENVRGARTAVEYLIARGHTRIGAIVGSAGLMTSRERLKGFR 148 (291)
T ss_dssp -CCHHHHHSSCTTSCEEEESSCCC---CTT---CEEEEECHHHHHHHHHHHHHHTTCCSEEEECSCTTSHHHHHHHHHHH
T ss_pred -ChHHHHHhhccCCCEEEEecccC---CCC---CCEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCCCCcCHHHHHHHHH
Confidence 33445567778999998755432 122 3345567777888899999889999999998543 34456678899
Q ss_pred HHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhc--CCceEEEEEcchhhHHHHHHHHHHcCCCCCc-eEEEEeC
Q 002371 181 DKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRM--MEARVIVVHGYSRTGLMVFDVAQRLGMMDSG-YVWIATT 254 (930)
Q Consensus 181 ~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~--~~~~viv~~~~~~~~~~~~~~a~~~g~~~~~-~~~i~~~ 254 (930)
+++++.|+.+......... .+..+....+.++.+ .++++|+ +.+...+..+++++++.|+..++ ...++.|
T Consensus 149 ~~l~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di~vvg~d 222 (291)
T 3egc_A 149 AAMSAAGLPVRQEWIAAGG--VRADNGRDGAIKVLTGADRPTALL-TSSHRITEGAMQALNVLGLRYGPDVEIVSFD 222 (291)
T ss_dssp HHHHHTTCCCCGGGEEC--------CCHHHHHHHHTC-CCCSEEE-ESSHHHHHHHHHHHHHHTCCBTTTBEEEEES
T ss_pred HHHHHcCCCCCHHHeEeCC--CChhHHHHHHHHHHhCCCCCcEEE-ECCcHHHHHHHHHHHHcCCCCCCceEEEEec
Confidence 9999998764211111111 011122233444432 4577766 56677788899999999987443 3344444
No 122
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=97.97 E-value=0.0004 Score=73.52 Aligned_cols=210 Identities=9% Similarity=0.017 Sum_probs=131.6
Q ss_pred CceEEEeEEeec------CCCcchHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEc
Q 002371 24 PEVLNVGAIFSF------GTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVG 97 (930)
Q Consensus 24 ~~~I~IG~~~~l------~~~~G~~~~~a~~lAve~iN~~ggil~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiG 97 (930)
...-+||+++|. +..+-.....|++-++++. |+++ .+.++..++.........+.+++|++||-
T Consensus 5 ~~s~~Igvi~~~~~~~~~~~~f~~~~~~gi~~~a~~~--------g~~~--~~~~~~~~~~~~~~~~~~l~~~~vdGiI~ 74 (295)
T 3hcw_A 5 NQTYKIGLVLKGSEEPIRLNPFYINVLLGISETCNQH--------GYGT--QTTVSNNMNDLMDEVYKMIKQRMVDAFIL 74 (295)
T ss_dssp CCSCEEEEECSCCCHHHHSCHHHHHHHHHHHHHHHTT--------TCEE--EECCCCSHHHHHHHHHHHHHTTCCSEEEE
T ss_pred CCCcEEEEEeecCCcccccChHHHHHHHHHHHHHHHC--------CCEE--EEEcCCCChHHHHHHHHHHHhCCcCEEEE
Confidence 345689999954 2333344556666555541 5655 45566666666666666777778888874
Q ss_pred cCChhhHHHHHHhhhcCCCcEEEeecCCCCCCCCCCCeEEEccCChHHHHHHHHHHHHHcCCcEEEEEEecCC--cCcch
Q 002371 98 PQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD--QGRNG 175 (930)
Q Consensus 98 p~~S~~~~av~~~~~~~~vp~is~~a~~~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~~~w~~vaii~~d~~--~g~~~ 175 (930)
...... ......+...++|+|......+... ... ..+..++...+..++++|...|.++++++..... .....
T Consensus 75 ~~~~~~-~~~~~~l~~~~iPvV~i~~~~~~~~-~~~---~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R 149 (295)
T 3hcw_A 75 LYSKEN-DPIKQMLIDESMPFIVIGKPTSDID-HQF---THIDNDNILASENLTRHVIEQGVDELIFITEKGNFEVSKDR 149 (295)
T ss_dssp SCCCTT-CHHHHHHHHTTCCEEEESCCCSSGG-GGS---CEEEECHHHHHHHHHHHHHHHCCSEEEEEEESSCCHHHHHH
T ss_pred cCcccC-hHHHHHHHhCCCCEEEECCCCcccc-CCc---eEEecCcHHHHHHHHHHHHHcCCccEEEEcCCccchhHHHH
Confidence 322221 2345556778999998754322110 022 2344566777888888888899999999986433 34556
Q ss_pred HHHHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhc-----CCceEEEEEcchhhHHHHHHHHHHcCCCCCceE-
Q 002371 176 VTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRM-----MEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYV- 249 (930)
Q Consensus 176 ~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~-----~~~~viv~~~~~~~~~~~~~~a~~~g~~~~~~~- 249 (930)
.+.|.+++++.|+.+... .... +..+....+.++.+ ..+++|+ +.+...+..+++++++.|+..++-+
T Consensus 150 ~~Gf~~al~~~g~~~~~~-~~~~----~~~~~~~~~~~~l~~~~~~~~~~ai~-~~~d~~A~g~~~al~~~g~~vP~di~ 223 (295)
T 3hcw_A 150 IQGFETVASQFNLDYQII-ETSN----EREVILNYMQNLHTRLKDPNIKQAII-SLDAMLHLAILSVLYELNIEIPKDVM 223 (295)
T ss_dssp HHHHHHHHHHTTCEEEEE-EECS----CHHHHHHHHHHHHHHHTCTTSCEEEE-ESSHHHHHHHHHHHHHTTCCTTTTEE
T ss_pred HHHHHHHHHHcCCCeeEE-eccC----CHHHHHHHHHHHHhhcccCCCCcEEE-ECChHHHHHHHHHHHHcCCCCCCceE
Confidence 789999999999887522 2222 24444444444433 2578765 5667778899999999998755433
Q ss_pred EEEeC
Q 002371 250 WIATT 254 (930)
Q Consensus 250 ~i~~~ 254 (930)
.++.|
T Consensus 224 vig~D 228 (295)
T 3hcw_A 224 TATFN 228 (295)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 44433
No 123
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=97.97 E-value=0.00018 Score=75.98 Aligned_cols=204 Identities=7% Similarity=-0.028 Sum_probs=127.1
Q ss_pred CceEEEeEEeecCC---CcchHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccCC
Q 002371 24 PEVLNVGAIFSFGT---VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQS 100 (930)
Q Consensus 24 ~~~I~IG~~~~l~~---~~G~~~~~a~~lAve~iN~~ggil~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~ 100 (930)
...-+||+++|-.. .+-.....+++-++++ .|+++.+. ++..++.........+.+++|++||-...
T Consensus 6 ~~s~~Igvv~~~~~~~~~~~~~~~~gi~~~a~~--------~g~~~~~~--~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 75 (288)
T 3gv0_A 6 GKTNVIALVLSVDEELMGFTSQMVFGITEVLST--------TQYHLVVT--PHIHAKDSMVPIRYILETGSADGVIISKI 75 (288)
T ss_dssp -CCCEEEEECBCCCCSSCHHHHHHHHHHHHHTT--------SSCEEEEC--CBSSGGGTTHHHHHHHHHTCCSEEEEESC
T ss_pred CCCCEEEEEecCCccccHHHHHHHHHHHHHHHH--------cCCEEEEe--cCCcchhHHHHHHHHHHcCCccEEEEecC
Confidence 34578999999643 3444455555555444 25666554 44433333323333344567777763222
Q ss_pred hhhHHHHHHhhhcCCCcEEEeecCCCCCCCCCCCeEEEccCChHHHHHHHHHHHHHcCCcEEEEEEecCC--cCcchHHH
Q 002371 101 AVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD--QGRNGVTA 178 (930)
Q Consensus 101 S~~~~av~~~~~~~~vp~is~~a~~~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~~~w~~vaii~~d~~--~g~~~~~~ 178 (930)
.... .....+.+.++|+|..+...+ +... -.+..++...+..+++++...|.++++++..+.. ......+.
T Consensus 76 ~~~~-~~~~~l~~~~iPvV~i~~~~~---~~~~---~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~g 148 (288)
T 3gv0_A 76 EPND-PRVRFMTERNMPFVTHGRSDM---GIEH---AFHDFDNEAYAYEAVERLAQCGRKRIAVIVPPSRFSFHDHARKG 148 (288)
T ss_dssp CTTC-HHHHHHHHTTCCEEEESCCCS---SCCC---EEEEECHHHHHHHHHHHHHHTTCCEEEEECCCTTSHHHHHHHHH
T ss_pred CCCc-HHHHHHhhCCCCEEEECCcCC---CCCC---cEEEeCcHHHHHHHHHHHHHCCCCeEEEEcCCcccchHHHHHHH
Confidence 2111 334556678999998754322 1222 2345677777888999999999999999975432 34566789
Q ss_pred HHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcC--CceEEEEEcchhhHHHHHHHHHHcCCCCCc
Q 002371 179 LGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGMMDSG 247 (930)
Q Consensus 179 ~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~--~~~viv~~~~~~~~~~~~~~a~~~g~~~~~ 247 (930)
|.+++++.|+.+.....+... .+..+....+.++.+. ++++|+ +.+...+..+++++++.|+..++
T Consensus 149 f~~~l~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~A~g~~~al~~~g~~vP~ 216 (288)
T 3gv0_A 149 FNRGIRDFGLTEFPIDAVTIE--TPLEKIRDFGQRLMQSSDRPDGIV-SISGSSTIALVAGFEAAGVKIGE 216 (288)
T ss_dssp HHHHHHHTTCEECCCCSCCTT--SCHHHHHHHHHHHTTSSSCCSEEE-ESCHHHHHHHHHHHHTTTCCTTT
T ss_pred HHHHHHHcCCCcchhheeccc--cchHHHHHHHHHHHhCCCCCcEEE-EcCcHHHHHHHHHHHHcCCCCCC
Confidence 999999999876533223322 3345555667777654 467765 56667788899999999987544
No 124
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=97.93 E-value=0.00087 Score=69.85 Aligned_cols=205 Identities=11% Similarity=0.101 Sum_probs=126.1
Q ss_pred EEeEEeec-CCCcchHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEc-cCChhhHH
Q 002371 28 NVGAIFSF-GTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVG-PQSAVMAH 105 (930)
Q Consensus 28 ~IG~~~~l-~~~~G~~~~~a~~lAve~iN~~ggil~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiG-p~~S~~~~ 105 (930)
+||++.|- +..+-.....+++-++++. |+++. +.++..++..-......++.++|++||= |..+....
T Consensus 3 ~Igvi~~~~~~~f~~~~~~gi~~~~~~~--------g~~~~--~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~ 72 (271)
T 2dri_A 3 TIALVVSTLNNPFFVSLKDGAQKEADKL--------GYNLV--VLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVG 72 (271)
T ss_dssp EEEEEESCSSSHHHHHHHHHHHHHHHHH--------TCEEE--EEECTTCHHHHHHHHHHHTTTTEEEEEECCSSTTTTH
T ss_pred EEEEEecCCCCHHHHHHHHHHHHHHHHc--------CcEEE--EeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHH
Confidence 58998875 3444445667777777663 45554 4566667766666677777778998773 33333222
Q ss_pred HHHHhhhcCCCcEEEeecCCCCCCCCCCCeEEEccCChHHHHHHHHHHHHHc--CCcEEEEEEecC--CcCcchHHHHHH
Q 002371 106 VLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYF--GWGEVIAIFNDD--DQGRNGVTALGD 181 (930)
Q Consensus 106 av~~~~~~~~vp~is~~a~~~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~~--~w~~vaii~~d~--~~g~~~~~~~~~ 181 (930)
.....+.+.++|++......+ ... ..-....++..-+..+++++... |.++++++.... .......+.|.+
T Consensus 73 ~~~~~~~~~~iPvV~i~~~~~---~~~--~~~~V~~D~~~~g~~a~~~L~~~g~g~~~I~~i~g~~~~~~~~~R~~Gf~~ 147 (271)
T 2dri_A 73 NAVKMANQANIPVITLDRQAT---KGE--VVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQ 147 (271)
T ss_dssp HHHHHHHHTTCCEEEESSCCS---SSC--CSEEEEECHHHHHHHHHHHHHHHHCTTCEEEEEECCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCcEEEecCCCC---CCc--eeEEEecChHHHHHHHHHHHHHHcCCCCeEEEEECCCCCccHhHHHHHHHH
Confidence 334455667999998754321 111 11234456666677788887776 568999998542 223456788999
Q ss_pred HHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhc--CCceEEEEEcchhhHHHHHHHHHHcCCCCCceEEEEeC
Q 002371 182 KLAEIRCKISYKSALPPDQSVTETDVRNELVKVRM--MEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATT 254 (930)
Q Consensus 182 ~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~--~~~~viv~~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~ 254 (930)
++++.|+++..... .. .+...-...+.++.+ ..+++ |++.+...+..+++++++.|+ .+...++-|
T Consensus 148 al~~~g~~~~~~~~--~~--~~~~~~~~~~~~ll~~~~~~~a-i~~~nD~~A~g~~~al~~~g~--~dv~vvGfD 215 (271)
T 2dri_A 148 AVAAHKFNVLASQP--AD--FDRIKGLNVMQNLLTAHPDVQA-VFAQNDEMALGALRALQTAGK--SDVMVVGFD 215 (271)
T ss_dssp HHHHHTCEEEEEEE--CT--TCHHHHHHHHHHHHHHCTTCCE-EEESSHHHHHHHHHHHHHHTC--CSCEEEEEE
T ss_pred HHhcCCCEEEEecC--CC--CCHHHHHHHHHHHHHhCCCccE-EEECCCcHHHHHHHHHHHcCC--CCcEEEEec
Confidence 99999988754321 11 123333344455433 34666 445666778899999999997 344444433
No 125
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=97.93 E-value=0.00023 Score=77.36 Aligned_cols=209 Identities=8% Similarity=-0.027 Sum_probs=135.1
Q ss_pred CceEEEeEEeecC-CCcchHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccCChh
Q 002371 24 PEVLNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAV 102 (930)
Q Consensus 24 ~~~I~IG~~~~l~-~~~G~~~~~a~~lAve~iN~~ggil~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~S~ 102 (930)
...-+||+++|-. ..+-.....+++-++++ .|+++. +.++..++..-......+++++|++||=.....
T Consensus 66 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~--------~g~~~~--~~~~~~~~~~~~~~i~~l~~~~vdGiIi~~~~~ 135 (344)
T 3kjx_A 66 NRVNLVAVIIPSLSNMVFPEVLTGINQVLED--------TELQPV--VGVTDYLPEKEEKVLYEMLSWRPSGVIIAGLEH 135 (344)
T ss_dssp SCCSEEEEEESCSSSSSHHHHHHHHHHHHTS--------SSSEEE--EEECTTCHHHHHHHHHHHHTTCCSEEEEECSCC
T ss_pred CCCCEEEEEeCCCCcHHHHHHHHHHHHHHHH--------CCCEEE--EEeCCCCHHHHHHHHHHHHhCCCCEEEEECCCC
Confidence 3467899999863 44444556666655544 256654 556667787777777888888888777322221
Q ss_pred hHHHHHHhhhcCCCcEEEeecCCCCCCCCCCCeEEEccCChHHHHHHHHHHHHHcCCcEEEEEEecC---CcCcchHHHH
Q 002371 103 MAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDD---DQGRNGVTAL 179 (930)
Q Consensus 103 ~~~av~~~~~~~~vp~is~~a~~~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~~~w~~vaii~~d~---~~g~~~~~~~ 179 (930)
.. .....+...++|++...... .. +.......++..-+..+++++...|.++++++.... .......+.|
T Consensus 136 ~~-~~~~~l~~~~iPvV~i~~~~---~~---~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~Gf 208 (344)
T 3kjx_A 136 SE-AARAMLDAAGIPVVEIMDSD---GK---PVDAMVGISHRRAGREMAQAILKAGYRRIGFMGTKMPLDYRARKRFEGF 208 (344)
T ss_dssp CH-HHHHHHHHCSSCEEEEEECS---SC---CSSEEEEECHHHHHHHHHHHHHHHTCCSCCEEESSTTTCHHHHHHHHHH
T ss_pred CH-HHHHHHHhCCCCEEEEeCCC---CC---CCCCEEEECcHHHHHHHHHHHHHCCCCeEEEEecCcccCccHHHHHHHH
Confidence 12 34556677899999874321 11 222345567777788888998889999999998653 2344567889
Q ss_pred HHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhc--CCceEEEEEcchhhHHHHHHHHHHcCCCCCceEEEE
Q 002371 180 GDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRM--MEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIA 252 (930)
Q Consensus 180 ~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~--~~~~viv~~~~~~~~~~~~~~a~~~g~~~~~~~~i~ 252 (930)
.+++++.|+.+.....+... .+..+-...+.++.+ .++++|| +.+...+..+++++++.|+..++-+-+.
T Consensus 209 ~~al~~~g~~~~~~~~~~~~--~~~~~~~~~~~~ll~~~~~~~ai~-~~nd~~A~g~~~al~~~g~~vP~disvv 280 (344)
T 3kjx_A 209 TEVLGKNGVEIEDREFYSGG--SALAKGREMTQAMLERSPDLDFLY-YSNDMIAAGGLLYLLEQGIDIPGQIGLA 280 (344)
T ss_dssp HHHHHHTTCCCSCEEECSSC--CCHHHHHHHHHHHHHHSTTCCEEE-ESSHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred HHHHHHcCCCCChheEEeCC--CCHHHHHHHHHHHHhcCCCCCEEE-ECCHHHHHHHHHHHHHcCCCCCCceEEE
Confidence 99999999876433333222 223333444444433 3577766 5667778889999999998765444333
No 126
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=97.89 E-value=0.00016 Score=76.70 Aligned_cols=208 Identities=12% Similarity=0.064 Sum_probs=134.1
Q ss_pred eEEEeEEeecC-CCcchHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccC-Chh-
Q 002371 26 VLNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQ-SAV- 102 (930)
Q Consensus 26 ~I~IG~~~~l~-~~~G~~~~~a~~lAve~iN~~ggil~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~-~S~- 102 (930)
.-+||+++|-. ..+-.....+++-++++. |+++. +.++..++..-......++++++++||-.. .+.
T Consensus 15 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~ 84 (298)
T 3tb6_A 15 NKTIGVLTTYISDYIFPSIIRGIESYLSEQ--------GYSML--LTSTNNNPDNERRGLENLLSQHIDGLIVEPTKSAL 84 (298)
T ss_dssp CCEEEEEESCSSSTTHHHHHHHHHHHHHHT--------TCEEE--EEECTTCHHHHHHHHHHHHHTCCSEEEECCSSTTS
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHHHC--------CCEEE--EEeCCCChHHHHHHHHHHHHCCCCEEEEecccccc
Confidence 36899999974 445556777888777762 56554 456667888888888888888888887433 221
Q ss_pred --hHHHHHHhhhcCCCcEEEeecCCCCCCCCCCCeEEEccCChHHHHHHHHHHHHHcCCcEEEEEEecC-CcCcchHHHH
Q 002371 103 --MAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDD-DQGRNGVTAL 179 (930)
Q Consensus 103 --~~~av~~~~~~~~vp~is~~a~~~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~~~w~~vaii~~d~-~~g~~~~~~~ 179 (930)
........+...++|+|......+. ...++ ...++...+..+++++...|.++++++.... .......+.|
T Consensus 85 ~~~~~~~~~~~~~~~iPvV~~~~~~~~---~~~~~---V~~d~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~R~~gf 158 (298)
T 3tb6_A 85 QTPNIGYYLNLEKNGIPFAMINASYAE---LAAPS---FTLDDVKGGMMAAEHLLSLGHTHMMGIFKADDTQGVKRMNGF 158 (298)
T ss_dssp CCTTHHHHHHHHHTTCCEEEESSCCTT---CSSCE---EEECHHHHHHHHHHHHHHTTCCSEEEEEESSSHHHHHHHHHH
T ss_pred cCCcHHHHHHHHhcCCCEEEEecCcCC---CCCCE---EEeCcHHHHHHHHHHHHHCCCCcEEEEcCCCCccHHHHHHHH
Confidence 3344556677789999987554322 22233 4557777788899999999999999998543 3344567889
Q ss_pred HHHHHhcCcEEEEEE--ecCCCCCCChhHHHHHHHHHhcC--C--ceEEEEEcchhhHHHHHHHHHHcCCCCCceEEEE
Q 002371 180 GDKLAEIRCKISYKS--ALPPDQSVTETDVRNELVKVRMM--E--ARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIA 252 (930)
Q Consensus 180 ~~~l~~~g~~i~~~~--~~~~~~~~~~~d~~~~l~~l~~~--~--~~viv~~~~~~~~~~~~~~a~~~g~~~~~~~~i~ 252 (930)
.+++++.|+.+.... ..... .........+.++.+. + +++|+ +.+...+..+++++++.|+..++-+-+.
T Consensus 159 ~~~l~~~g~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di~vv 234 (298)
T 3tb6_A 159 IQAHRERELFPSPDMIVTFTTE--EKESKLLEKVKATLEKNSKHMPTAIL-CYNDEIALKVIDMLREMDLKVPEDMSIV 234 (298)
T ss_dssp HHHHHHTTCCCCGGGEEEECHH--HHTTHHHHHHHHHHHHTTTSCCSEEE-CSSHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred HHHHHHcCCCCCcceEEEeccc--chhhhHHHHHHHHHhcCCCCCCeEEE-EeCcHHHHHHHHHHHHcCCCCCCceEEE
Confidence 999999987643111 11111 0001112334444332 2 66755 4566778889999999998755434333
No 127
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=97.87 E-value=0.00051 Score=71.86 Aligned_cols=205 Identities=9% Similarity=-0.015 Sum_probs=131.5
Q ss_pred CceEEEeEEeecC-CCcchHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccCChh
Q 002371 24 PEVLNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAV 102 (930)
Q Consensus 24 ~~~I~IG~~~~l~-~~~G~~~~~a~~lAve~iN~~ggil~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~S~ 102 (930)
...-+||+++|-. ..+-.....+++-++++. |+++. +.++..++..-......++++++++||-.....
T Consensus 5 ~~s~~Igvi~~~~~~~~~~~~~~gi~~~~~~~--------g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~ 74 (276)
T 3jy6_A 5 QSSKLIAVIVANIDDYFSTELFKGISSILESR--------GYIGV--LFDANADIEREKTLLRAIGSRGFDGLILQSFSN 74 (276)
T ss_dssp CCCCEEEEEESCTTSHHHHHHHHHHHHHHHTT--------TCEEE--EEECTTCHHHHHHHHHHHHTTTCSEEEEESSCC
T ss_pred CCCcEEEEEeCCCCchHHHHHHHHHHHHHHHC--------CCEEE--EEeCCCCHHHHHHHHHHHHhCCCCEEEEecCCc
Confidence 3457899999864 333445566666655542 55554 456666777777777788888888887433333
Q ss_pred hHHHHHHhhhcCCCcEEEeecCCCCCCCCCCCeEEEccCChHHHHHHHHHHHHHcCCcEEEEEEecCC-c--CcchHHHH
Q 002371 103 MAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD-Q--GRNGVTAL 179 (930)
Q Consensus 103 ~~~av~~~~~~~~vp~is~~a~~~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~~~w~~vaii~~d~~-~--g~~~~~~~ 179 (930)
......+.+.++|+|......+ +...+ ....++...+..+++++...|.++++++..+.. + .....+.|
T Consensus 75 --~~~~~~l~~~~iPvV~i~~~~~---~~~~~---~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~gf 146 (276)
T 3jy6_A 75 --PQTVQEILHQQMPVVSVDREMD---ACPWP---QVVTDNFEAAKAATTAFRQQGYQHVVVLTSELELSRTRQERYRGI 146 (276)
T ss_dssp --HHHHHHHHTTSSCEEEESCCCT---TCSSC---EEECCHHHHHHHHHHHHHTTTCCEEEEEEECSTTCHHHHHHHHHH
T ss_pred --HHHHHHHHHCCCCEEEEecccC---CCCCC---EEEEChHHHHHHHHHHHHHcCCCeEEEEecCCCCCchHHHHHHHH
Confidence 4555667778999998754332 22233 345677778888999999999999999987543 2 24566788
Q ss_pred HHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhc-CCceEEEEEcchhhHHHHHHHHHHcCCCCCceEEEE
Q 002371 180 GDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRM-MEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIA 252 (930)
Q Consensus 180 ~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~-~~~~viv~~~~~~~~~~~~~~a~~~g~~~~~~~~i~ 252 (930)
.+++++.+. +. +...............+.++. .++++|+ +.+...+..+++++++.|+..++-+-+.
T Consensus 147 ~~~l~~~~~-~~----~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di~vi 214 (276)
T 3jy6_A 147 LAAAQDVDV-LE----VSESSYNHSEVHQRLTQLITQNDQKTVAF-ALKERWLLEFFPNLIISGLIDNQTVTAT 214 (276)
T ss_dssp HTTCSEEEE-EE----ECSSSCCHHHHHHHHHHHHHSSSSCEEEE-ESSHHHHHHHSHHHHHSSSCCSSSEEEE
T ss_pred HHHHHhCCc-EE----EeccccCCcHHHHHHHHHHhcCCCCcEEE-EeCcHHHHHHHHHHHHcCCCCCCcEEEE
Confidence 888887754 22 121100112344444444543 4567655 4667788889999999998755444433
No 128
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=97.86 E-value=0.00034 Score=76.08 Aligned_cols=208 Identities=10% Similarity=-0.003 Sum_probs=128.2
Q ss_pred ceEEEeEEeec-CCCcchHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccCChhh
Q 002371 25 EVLNVGAIFSF-GTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVM 103 (930)
Q Consensus 25 ~~I~IG~~~~l-~~~~G~~~~~a~~lAve~iN~~ggil~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~S~~ 103 (930)
..-+||++.|- +..+-.....|++-++++. |+++.+ .++..++.........++.++|++||-......
T Consensus 65 ~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~ 134 (348)
T 3bil_A 65 RSNTIGVIVPSLINHYFAAMVTEIQSTASKA--------GLATII--TNSNEDATTMSGSLEFLTSHGVDGIICVPNEEC 134 (348)
T ss_dssp ---CEEEEESCSSSHHHHHHHHHHHHHHHHT--------TCCEEE--EECTTCHHHHHHHHHHHHHTTCSCEEECCCGGG
T ss_pred CCCEEEEEeCCCCCcHHHHHHHHHHHHHHHc--------CCEEEE--EeCCCCHHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence 45689999985 3444445667777766652 565544 456667777667777788888888875433332
Q ss_pred HHHHHHhhhcCCCcEEEeecCCCCCCCCCCCeEEEccCChHHHHHHHHHHHHHcCCcEEEEEEecC--CcCcchHHHHHH
Q 002371 104 AHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDD--DQGRNGVTALGD 181 (930)
Q Consensus 104 ~~av~~~~~~~~vp~is~~a~~~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~~~w~~vaii~~d~--~~g~~~~~~~~~ 181 (930)
. .....+...++|+|......+. ....+ ....++...+..++++|...|.+++++|..+. .......+.|.+
T Consensus 135 ~-~~~~~l~~~~iPvV~i~~~~~~--~~~~~---~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~ 208 (348)
T 3bil_A 135 A-NQLEDLQKQGMPVVLVDRELPG--DSTIP---TATSNPQPGIAAAVELLAHNNALPIGYLSGPMDTSTGRERLEDFKA 208 (348)
T ss_dssp H-HHHHHHHHC-CCEEEESSCCSC--C-CCC---EEEEECHHHHHHHHHHHHHTTCCSEEEECCCTTSHHHHHHHHHHHH
T ss_pred h-HHHHHHHhCCCCEEEEcccCCC--CCCCC---EEEeChHHHHHHHHHHHHHCCCCeEEEEeCCCCCccHHHHHHHHHH
Confidence 2 3344456679999987543221 01223 33455666678888888888999999997543 234556788999
Q ss_pred HHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCC-ceEEEEEcchhhHHHHHHHHHHcCCCCCc-eEEEEeC
Q 002371 182 KLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMME-ARVIVVHGYSRTGLMVFDVAQRLGMMDSG-YVWIATT 254 (930)
Q Consensus 182 ~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~-~~viv~~~~~~~~~~~~~~a~~~g~~~~~-~~~i~~~ 254 (930)
++++.|+..... +... .+..+-...+.++.+.. + .|++.+...+..+++++++.|+..++ ...++.|
T Consensus 209 al~~~g~~~~~v--~~~~--~~~~~~~~~~~~ll~~~~~--ai~~~nD~~A~g~~~al~~~G~~vP~disvvG~D 277 (348)
T 3bil_A 209 ACANSKIGEQLV--FLGG--YEQSVGFEGATKLLDQGAK--TLFAGDSMMTIGVIEACHKAGLVIGKDVSVIGFD 277 (348)
T ss_dssp HHHHTTCCCCEE--ECCC--SSHHHHHHHHHHHHHTTCS--EEEESSHHHHHHHHHHHHHTTCCBTTTBEEEEES
T ss_pred HHHHcCcCccEE--EcCC--CCHHHHHHHHHHHHcCCCC--EEEEcChHHHHHHHHHHHHcCCCCCCCeEEEEeC
Confidence 999998732111 1111 12344444555555443 5 45567777788999999999986543 3344433
No 129
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=97.84 E-value=0.00016 Score=76.51 Aligned_cols=209 Identities=9% Similarity=-0.029 Sum_probs=129.3
Q ss_pred ceEEEeEEeec-----CCCcchHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccC
Q 002371 25 EVLNVGAIFSF-----GTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQ 99 (930)
Q Consensus 25 ~~I~IG~~~~l-----~~~~G~~~~~a~~lAve~iN~~ggil~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~ 99 (930)
..-+||+++|. +..+-.....|++-++++. |+++.+...++ . .........+..++|++||-..
T Consensus 5 ~s~~Igvi~~~~~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~~~~~~-~--~~~~~~~~~l~~~~vdGiIi~~ 73 (294)
T 3qk7_A 5 RTDAIALAYPSRPRVLNNSTFLEMISWIGIELGKR--------GLDLLLIPDEP-G--EKYQSLIHLVETRRVDALIVAH 73 (294)
T ss_dssp CCCEEEEEEESCSGGGSCHHHHHHHHHHHHHHHHT--------TCEEEEEEECT-T--CCCHHHHHHHHHTCCSEEEECS
T ss_pred ccceEEEEecCCCccccChhHHHHHHHHHHHHHHC--------CCEEEEEeCCC-h--hhHHHHHHHHHcCCCCEEEEeC
Confidence 35689999983 3444445667777666652 67777766654 2 1222233445556888877422
Q ss_pred ChhhHHHHHHhhhcCCCcEEEeecCCCCCCCCCCCeEEEccCChHHHHHHHHHHHHHcCCcEEEEEEecCC--cCcchHH
Q 002371 100 SAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD--QGRNGVT 177 (930)
Q Consensus 100 ~S~~~~av~~~~~~~~vp~is~~a~~~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~~~w~~vaii~~d~~--~g~~~~~ 177 (930)
..... .....+...++|+|......+ ... +-....++...+..+++++...|.++++++..... ..+...+
T Consensus 74 ~~~~~-~~~~~l~~~~iPvV~~~~~~~---~~~---~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~ 146 (294)
T 3qk7_A 74 TQPED-FRLQYLQKQNFPFLALGRSHL---PKP---YAWFDFDNHAGASLAVKRLLELGHQRIAFVSTDARISYVDQRLQ 146 (294)
T ss_dssp CCSSC-HHHHHHHHTTCCEEEESCCCC---SSC---CEEEEECHHHHHHHHHHHHHHTTCCCEEEEEESSCCHHHHHHHH
T ss_pred CCCCh-HHHHHHHhCCCCEEEECCCCC---CCC---CCEEEcChHHHHHHHHHHHHHCCCceEEEEeCCcccchHHHHHH
Confidence 22112 344566778999998755321 222 23455677777888899999999999999986532 3445678
Q ss_pred HHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcC--CceEEEEEcchhhHHHHHHHHHHcCCCCCc-eEEEEeC
Q 002371 178 ALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGMMDSG-YVWIATT 254 (930)
Q Consensus 178 ~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~--~~~viv~~~~~~~~~~~~~~a~~~g~~~~~-~~~i~~~ 254 (930)
.|.+++++.|+.+.....+... .+..+-...+.++.+. ++++|+ +.+...+..+++++++.|+..++ ...++-|
T Consensus 147 Gf~~al~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~-~~nd~~A~g~~~al~~~G~~vP~di~vig~D 223 (294)
T 3qk7_A 147 GYVQTMSEAGLMPLAGYLQKAD--PTRPGGYLAASRLLALEVPPTAII-TDCNMLGDGVASALDKAGLLGGEGISLIAYD 223 (294)
T ss_dssp HHHHHHHTTTCCCCTTCEEEEC--SSHHHHHHHHHHHHHSSSCCSEEE-ESSHHHHHHHHHHHHHTTCSSTTSCEEEEET
T ss_pred HHHHHHHHCCCCCChhHeecCC--CCHHHHHHHHHHHHcCCCCCcEEE-ECCHHHHHHHHHHHHHcCCCCCCceEEEeec
Confidence 9999999998764211011111 1234444455555543 567755 56677788899999999987554 3344444
No 130
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=97.84 E-value=0.00029 Score=74.97 Aligned_cols=210 Identities=10% Similarity=0.008 Sum_probs=133.0
Q ss_pred CCceEEEeEEeecC-CCcchHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccCCh
Q 002371 23 KPEVLNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSA 101 (930)
Q Consensus 23 ~~~~I~IG~~~~l~-~~~G~~~~~a~~lAve~iN~~ggil~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~S 101 (930)
....-+||+++|-. ..+-.....|++-++++. |+++. +.++..++..-......+++++|++||-....
T Consensus 12 ~~~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~ 81 (303)
T 3kke_A 12 HSRSGTIGLIVPDVNNAVFADMFSGVQMAASGH--------STDVL--LGQIDAPPRGTQQLSRLVSEGRVDGVLLQRRE 81 (303)
T ss_dssp -----CEEEEESCTTSTTHHHHHHHHHHHHHHT--------TCCEE--EEECCSTTHHHHHHHHHHHSCSSSEEEECCCT
T ss_pred hCCCCEEEEEeCCCcChHHHHHHHHHHHHHHHC--------CCEEE--EEeCCCChHHHHHHHHHHHhCCCcEEEEecCC
Confidence 34467899999863 455566778888777763 55554 45666677776777777888888888743332
Q ss_pred hhHH-HHHHhhhcCCCcEEEeecCCCCCCCCCCCeEEEccCChHHHHHHHHHHHHHcCCcEEEEEEecC--CcCcchHHH
Q 002371 102 VMAH-VLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDD--DQGRNGVTA 178 (930)
Q Consensus 102 ~~~~-av~~~~~~~~vp~is~~a~~~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~~~w~~vaii~~d~--~~g~~~~~~ 178 (930)
.... .+.. +.+ ++|+|......+. ..+ ....++...+..+++++...|.++++++.... .......+.
T Consensus 82 ~~~~~~~~~-l~~-~iPvV~i~~~~~~----~~~---~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~G 152 (303)
T 3kke_A 82 DFDDDMLAA-VLE-GVPAVTINSRVPG----RVG---SVILDDQKGGGIATEHLITLGHSRIAFISGTAIHDTAQRRKEG 152 (303)
T ss_dssp TCCHHHHHH-HHT-TSCEEEESCCCTT----CCC---EEEECHHHHHHHHHHHHHHTTCCSEEEEESCSSCHHHHHHHHH
T ss_pred CCcHHHHHH-HhC-CCCEEEECCcCCC----CCC---EEEECcHHHHHHHHHHHHHCCCCeEEEEeCCCcCccHHHHHHH
Confidence 2222 3334 444 9999987654432 233 34466777788888999889999999998543 334556789
Q ss_pred HHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHH-----hcC--CceEEEEEcchhhHHHHHHHHHHcCCCCCc-eEE
Q 002371 179 LGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKV-----RMM--EARVIVVHGYSRTGLMVFDVAQRLGMMDSG-YVW 250 (930)
Q Consensus 179 ~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l-----~~~--~~~viv~~~~~~~~~~~~~~a~~~g~~~~~-~~~ 250 (930)
|.+++++.|+.+......... .+.++-...+.++ .+. ++++|+ +.+...+..+++++++.|+..++ ...
T Consensus 153 f~~al~~~g~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~l~~~~~~~ai~-~~nd~~A~g~~~al~~~G~~vP~di~v 229 (303)
T 3kke_A 153 YLETLASAGLRSEAAWVVDAG--WEADAGSAALNTLYRGANLGKPDGPTAVV-VASVNAAVGALSTALRLGLRVPEDLSI 229 (303)
T ss_dssp HHHHHHHTTCCCCGGGEEECC--SSHHHHHHHHHHHHHHHCTTSTTSCSEEE-ESSHHHHHHHHHHHHHTTCCTTTTCEE
T ss_pred HHHHHHHcCCCCCcceEEecC--CChHHHHHHHHHhcchhhhcCCCCCcEEE-ECCHHHHHHHHHHHHHcCCCCCCceEE
Confidence 999999999865311111111 1244445556666 443 467655 45667788899999999987543 334
Q ss_pred EEeC
Q 002371 251 IATT 254 (930)
Q Consensus 251 i~~~ 254 (930)
++.|
T Consensus 230 ig~D 233 (303)
T 3kke_A 230 VGIN 233 (303)
T ss_dssp EEES
T ss_pred EEEc
Confidence 4433
No 131
>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1
Probab=97.84 E-value=0.00068 Score=69.90 Aligned_cols=198 Identities=11% Similarity=0.005 Sum_probs=127.6
Q ss_pred EEeEEeec-CCCcchHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccCChhhHHH
Q 002371 28 NVGAIFSF-GTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVMAHV 106 (930)
Q Consensus 28 ~IG~~~~l-~~~~G~~~~~a~~lAve~iN~~ggil~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~S~~~~a 106 (930)
+||++.|- +..+-.....|++-++++. |+++.+ .++..++..-......++.++|++||-.......
T Consensus 4 ~Igvi~~~~~~~~~~~~~~gi~~~~~~~--------g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~-- 71 (255)
T 1byk_A 4 VVAIIVTRLDSLSENLAVQTMLPAFYEQ--------GYDPIM--MESQFSPQLVAEHLGVLKRRNIDGVVLFGFTGIT-- 71 (255)
T ss_dssp EEEEEESCTTCHHHHHHHHHHHHHHHHH--------TCEEEE--EECTTCHHHHHHHHHHHHTTTCCEEEEECCTTCC--
T ss_pred EEEEEeCCCCCccHHHHHHHHHHHHHHc--------CCEEEE--EeCCCcHHHHHHHHHHHHhcCCCEEEEecCcccc--
Confidence 68999985 3444445677777777664 565544 4566677666666677777788887743222111
Q ss_pred HHHhhhcCCCcEEEeecCCCCCCCCCCCeEEEccCChHHHHHHHHHHHHHcCCcEEEEEEec---CCcCcchHHHHHHHH
Q 002371 107 LSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFND---DDQGRNGVTALGDKL 183 (930)
Q Consensus 107 v~~~~~~~~vp~is~~a~~~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~~~w~~vaii~~d---~~~g~~~~~~~~~~l 183 (930)
.+...+.++|++...... +.+-....++...+..+++++...|.++++++..+ ........+.|.+++
T Consensus 72 -~~~l~~~~~pvV~~~~~~--------~~~~~V~~d~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~gf~~al 142 (255)
T 1byk_A 72 -EEMLAHWQSSLVLLARDA--------KGFASVCYDDEGAIKILMQRLYDQGHRNISYLGVPHSDVTTGKRRHEAYLAFC 142 (255)
T ss_dssp -TTTSGGGSSSEEEESSCC--------SSCEEEEECHHHHHHHHHHHHHHTTCCCEEEECCCTTSTTTTHHHHHHHHHHH
T ss_pred -HHHHHhcCCCEEEEcccc--------CCCCEEEEccHHHHHHHHHHHHHcCCCeEEEEecCCCCcccHHHHHHHHHHHH
Confidence 123456689999875421 12234556777778888899888999999999854 234556788999999
Q ss_pred HhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchhhHHHHHHHHHHcCCCCCceEEEEeC
Q 002371 184 AEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATT 254 (930)
Q Consensus 184 ~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~ 254 (930)
++.|+.+.. +... .+..+-...+.++.+.++++|+ +.+...+..+++++++.|+ .+...++.|
T Consensus 143 ~~~g~~~~~---~~~~--~~~~~~~~~~~~~l~~~~~ai~-~~~d~~A~g~~~al~~~g~--~di~vig~d 205 (255)
T 1byk_A 143 KAHKLHPVA---ALPG--LAMKQGYENVAKVITPETTALL-CATDTLALGASKYLQEQRI--DTLQLASVG 205 (255)
T ss_dssp HHTTCCCEE---ECCC--SCHHHHHHHSGGGCCTTCCEEE-ESSHHHHHHHHHHHHHTTC--CSCEEEEEC
T ss_pred HHcCCCcce---eecC--CccchHHHHHHHHhcCCCCEEE-EeChHHHHHHHHHHHHcCC--CcEEEEEeC
Confidence 999986432 2222 2234444445555555688765 4566678889999999997 344444443
No 132
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=97.83 E-value=0.0012 Score=71.86 Aligned_cols=208 Identities=9% Similarity=0.036 Sum_probs=131.9
Q ss_pred ceEEEeEEeecC-CCcchHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccCChhh
Q 002371 25 EVLNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVM 103 (930)
Q Consensus 25 ~~I~IG~~~~l~-~~~G~~~~~a~~lAve~iN~~ggil~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~S~~ 103 (930)
..-.||+++|-. ..+-.....+++-++++. |+.+. +.++..++..-......++.+++++||-......
T Consensus 69 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~~~~ 138 (355)
T 3e3m_A 69 RSGFVGLLLPSLNNLHFAQTAQSLTDVLEQG--------GLQLL--LGYTAYSPEREEQLVETMLRRRPEAMVLSYDGHT 138 (355)
T ss_dssp --CEEEEEESCSBCHHHHHHHHHHHHHHHHT--------TCEEE--EEECTTCHHHHHHHHHHHHHTCCSEEEEECSCCC
T ss_pred CCCEEEEEeCCCCchHHHHHHHHHHHHHHHC--------CCEEE--EEeCCCChHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence 356799999863 333344566666666652 56654 4566677777777777888888887774222222
Q ss_pred HHHHHHhhhcCCCcEEEeecCCCCCCCCCCCeEEEccCChHHHHHHHHHHHHHcCCcEEEEEEecCCc---CcchHHHHH
Q 002371 104 AHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQ---GRNGVTALG 180 (930)
Q Consensus 104 ~~av~~~~~~~~vp~is~~a~~~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~~~w~~vaii~~d~~~---g~~~~~~~~ 180 (930)
. .....+...++|+|...... .. +.......++..-+..++++|...|.++++++..+... .....+.|.
T Consensus 139 ~-~~~~~l~~~~iPvV~i~~~~---~~---~~~~~V~~D~~~~~~~a~~~L~~~G~r~I~~i~~~~~~~~~~~~R~~Gf~ 211 (355)
T 3e3m_A 139 E-QTIRLLQRASIPIVEIWEKP---AH---PIGHTVGFSNERAAYDMTNALLARGFRKIVFLGEKDDDWTRGAARRAGFK 211 (355)
T ss_dssp H-HHHHHHHHCCSCEEEESSCC---SS---CSSEEEECCHHHHHHHHHHHHHHTTCCSEEEEEESSCTTSHHHHHHHHHH
T ss_pred H-HHHHHHHhCCCCEEEECCcc---CC---CCCCEEEeChHHHHHHHHHHHHHCCCCeEEEEccCcccChhHHHHHHHHH
Confidence 2 34455677899999863221 11 22235566777778888899999999999999875432 346688999
Q ss_pred HHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhc--CCceEEEEEcchhhHHHHHHHHHHcCCCCCceEEE
Q 002371 181 DKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRM--MEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWI 251 (930)
Q Consensus 181 ~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~--~~~~viv~~~~~~~~~~~~~~a~~~g~~~~~~~~i 251 (930)
+++++.|+.+.....+..+. .+.++-...+.++.+ .++++|| +.+...+..+++++++.|+..++-+-|
T Consensus 212 ~al~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~ll~~~~~~~ai~-~~nD~~A~g~~~al~~~G~~vP~disv 282 (355)
T 3e3m_A 212 RAMREAGLNPDQEIRLGAPP-LSIEDGVAAAELILQEYPDTDCIF-CVSDMPAFGLLSRLKSIGVAVPEQVSV 282 (355)
T ss_dssp HHHHHTTSCSCCEEEESCSS-CCHHHHHHHHHHHHHHCTTCCEEE-ESSHHHHHHHHHHHHHHTCCTTTTCEE
T ss_pred HHHHHCCcCCCccEEEecCC-CCHHHHHHHHHHHHcCCCCCcEEE-ECChHHHHHHHHHHHHcCCCCCCceEE
Confidence 99999998754212221110 123333444455443 3577755 566777888999999999875543333
No 133
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=97.82 E-value=0.002 Score=67.84 Aligned_cols=209 Identities=10% Similarity=0.009 Sum_probs=128.3
Q ss_pred EEeEEeec-CCCcchHHHHHHHHHHHHHhcCCCCCCCcEEEEEEec--CCCChHHHHHHHHHHHhcCcEEEEc-cCChhh
Q 002371 28 NVGAIFSF-GTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHD--AKFNGFLSIMGALQFMETDTLAIVG-PQSAVM 103 (930)
Q Consensus 28 ~IG~~~~l-~~~~G~~~~~a~~lAve~iN~~ggil~g~~l~l~~~D--~~~~~~~a~~~a~~li~~~v~aiiG-p~~S~~ 103 (930)
+||++.|- +..+-.....|++-+.++. |+++.+ .+ +..++..-......++.++|++||= |..+..
T Consensus 3 ~Igvi~~~~~~~f~~~~~~gi~~~a~~~--------g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~~~~ 72 (288)
T 1gud_A 3 EYAVVLKTLSNPFWVDMKKGIEDEAKTL--------GVSVDI--FASPSEGDFQSQLQLFEDLSNKNYKGIAFAPLSSVN 72 (288)
T ss_dssp EEEEEESCSSSHHHHHHHHHHHHHHHHH--------TCCEEE--EECSSTTCHHHHHHHHHHHHTSSEEEEEECCSSSST
T ss_pred EEEEEeCCCCchHHHHHHHHHHHHHHHc--------CCEEEE--eCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChHH
Confidence 68999875 3444445667777777764 455544 45 6667776666777788889998773 333322
Q ss_pred HHHHHHhhhcCCCcEEEeecCCCCCC----CCCCCeEEEccCChHHHHHHHHHHHHHc-C--CcEEEEEEecCCc--Ccc
Q 002371 104 AHVLSHLANELQVPLLSFTALDPTLS----PLQYPFFVQTAPNDLYLMSAIAEMVSYF-G--WGEVIAIFNDDDQ--GRN 174 (930)
Q Consensus 104 ~~av~~~~~~~~vp~is~~a~~~~ls----~~~~~~~fr~~p~~~~~~~ai~~~l~~~-~--w~~vaii~~d~~~--g~~ 174 (930)
.......+.+.++|+|......+... ...+ .-....++...+..++++|... | .+++++|...... ...
T Consensus 73 ~~~~~~~~~~~~iPvV~~~~~~~~~~~~~~~~~~--~~~V~~D~~~~g~~a~~~L~~~~G~~~~~I~~i~g~~~~~~~~~ 150 (288)
T 1gud_A 73 LVMPVARAWKKGIYLVNLDEKIDMDNLKKAGGNV--EAFVTTDNVAVGAKGASFIIDKLGAEGGEVAIIEGKAGNASGEA 150 (288)
T ss_dssp THHHHHHHHHTTCEEEEESSCCCHHHHHHTTCCC--SEEEECCHHHHHHHHHHHHHHHHGGGCEEEEEEECSTTCHHHHH
T ss_pred HHHHHHHHHHCCCeEEEECCCCCcccccccCCce--eEEECCChHHHHHHHHHHHHHHhCCCCCEEEEEeCCCCCchHhH
Confidence 22233445567999998754321100 0012 0234566777778888887776 8 8999999854322 334
Q ss_pred hHHHHHHHHHhc-CcEEEEEEecCCCCCCChhHHHHHHHHHhc--CCceEEEEEcchhhHHHHHHHHHHcCCCCCceEEE
Q 002371 175 GVTALGDKLAEI-RCKISYKSALPPDQSVTETDVRNELVKVRM--MEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWI 251 (930)
Q Consensus 175 ~~~~~~~~l~~~-g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~--~~~~viv~~~~~~~~~~~~~~a~~~g~~~~~~~~i 251 (930)
..+.|.+++++. |+++.....-. .+.+.-...+.++.+ ..+++|+ +.+...+..+++++++.|+. .+...+
T Consensus 151 R~~Gf~~al~~~~g~~~~~~~~~~----~~~~~~~~~~~~ll~~~~~~~ai~-~~nD~~A~g~~~al~~~G~~-~dv~vv 224 (288)
T 1gud_A 151 RRNGATEAFKKASQIKLVASQPAD----WDRIKALDVATNVLQRNPNIKAIY-CANDTMAMGVAQAVANAGKT-GKVLVV 224 (288)
T ss_dssp HHHHHHHHHHTCTTEEEEEEEECT----TCHHHHHHHHHHHHHHCTTCCEEE-ESSHHHHHHHHHHHHHTTCT-TTSEEE
T ss_pred HHHHHHHHHHhCCCcEEEEeecCC----ccHHHHHHHHHHHHHhCCCceEEE-ECCCchHHHHHHHHHhcCCC-CCeEEE
Confidence 577899999988 88765432211 123444444555543 3466644 55667788899999999984 444455
Q ss_pred EeC
Q 002371 252 ATT 254 (930)
Q Consensus 252 ~~~ 254 (930)
+-|
T Consensus 225 GfD 227 (288)
T 1gud_A 225 GTD 227 (288)
T ss_dssp EES
T ss_pred EeC
Confidence 544
No 134
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=97.81 E-value=0.0001 Score=77.85 Aligned_cols=206 Identities=9% Similarity=0.035 Sum_probs=128.6
Q ss_pred CCCceEEEeEEee--cCCCcchHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccC
Q 002371 22 LKPEVLNVGAIFS--FGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQ 99 (930)
Q Consensus 22 ~~~~~I~IG~~~~--l~~~~G~~~~~a~~lAve~iN~~ggil~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~ 99 (930)
+....-+||+++| ++..+-.....+++-++++. |+++.+...+...+. -......+.+++|++||-..
T Consensus 7 ~~~~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~~~~~~~~~~--~~~~~~~l~~~~vdgiIi~~ 76 (289)
T 3g85_A 7 NSQSKPTIALYWSSDISVNIISRFLRGLQSKLAKQ--------NYNYNVVICPYKTDC--LHLEKGISKENSFDAAIIAN 76 (289)
T ss_dssp ----CCEEEEEEETTSCGGGHHHHHHHHHHHHHHT--------TTCSEEEEEEECTTC--GGGCGGGSTTTCCSEEEESS
T ss_pred ccCCCceEEEEeccccchHHHHHHHHHHHHHHHHc--------CCeEEEEecCCCchh--HHHHHHHHhccCCCEEEEec
Confidence 3445688999999 34555556677777777662 455555443322221 12233445556888888544
Q ss_pred ChhhHHHHHHhhhcCCCcEEEeecCCCCCCCCCCCeEEEccCChHHHHHHHHHHHHHcCCcEEEEEEecC--CcCcchHH
Q 002371 100 SAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDD--DQGRNGVT 177 (930)
Q Consensus 100 ~S~~~~av~~~~~~~~vp~is~~a~~~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~~~w~~vaii~~d~--~~g~~~~~ 177 (930)
.......+... ...++|+|......+ . +.....++...+..+++++...|.++++++..+. ...+...+
T Consensus 77 ~~~~~~~~~~~-~~~~iPvV~~~~~~~-----~---~~~V~~D~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~ 147 (289)
T 3g85_A 77 ISNYDLEYLNK-ASLTLPIILFNRLSN-----K---YSSVNVDNYKMGEKASLLFAKKRYKSAAAILTESLNDAMDNRNK 147 (289)
T ss_dssp CCHHHHHHHHH-CCCSSCEEEESCCCS-----S---SEEEEECHHHHHHHHHHHHHHTTCCBCEEEECCCSSHHHHHHHH
T ss_pred CCcccHHHHHh-ccCCCCEEEECCCCC-----C---CCEEEeCHHHHHHHHHHHHHHcCCCEEEEEeCCcccccHHHHHH
Confidence 43333333333 367999998765322 2 2345667777888899999999999999998653 23455678
Q ss_pred HHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcC--CceEEEEEcchhhHHHHHHHHHHcCCCCCceE
Q 002371 178 ALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGMMDSGYV 249 (930)
Q Consensus 178 ~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~--~~~viv~~~~~~~~~~~~~~a~~~g~~~~~~~ 249 (930)
.|.+++++.|+.+.....+... .+.++....+.++.+. ++++|+ +.+...+..+++++++.|+..++-+
T Consensus 148 gf~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di 218 (289)
T 3g85_A 148 GFIETCHKNGIKISENHIIAAE--NSIHGGVDAAKKLMKLKNTPKALF-CNSDSIALGVISVLNKRQISIPDDI 218 (289)
T ss_dssp HHHHHHHHTTCBCCGGGEEECC--SSHHHHHHHHHHHTTSSSCCSEEE-ESSHHHHHHHHHHHHHTTCCTTTTC
T ss_pred HHHHHHHHcCCCCChhheeccC--CCHHHHHHHHHHHHcCCCCCcEEE-EcCCHHHHHHHHHHHHcCCCCCCce
Confidence 9999999999864311111111 2245555566666554 467665 5667778889999999998755433
No 135
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=97.81 E-value=0.00073 Score=70.70 Aligned_cols=199 Identities=9% Similarity=-0.058 Sum_probs=122.8
Q ss_pred CceEEEeEEeec-CCCcchHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccCChh
Q 002371 24 PEVLNVGAIFSF-GTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAV 102 (930)
Q Consensus 24 ~~~I~IG~~~~l-~~~~G~~~~~a~~lAve~iN~~ggil~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~S~ 102 (930)
....+||++.|- +..+-.....+++-++++ .|+++.+.. +..++..-. ++ +|++||-.....
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~--------~g~~~~~~~--~~~~~~~~~----~~---~vdgiI~~~~~~ 68 (277)
T 3cs3_A 6 RQTNIIGVYLADYGGSFYGELLEGIKKGLAL--------FDYEMIVCS--GKKSHLFIP----EK---MVDGAIILDWTF 68 (277)
T ss_dssp CCCCEEEEEECSSCTTTHHHHHHHHHHHHHT--------TTCEEEEEE--STTTTTCCC----TT---TCSEEEEECTTS
T ss_pred cCCcEEEEEecCCCChhHHHHHHHHHHHHHH--------CCCeEEEEe--CCCCHHHHh----hc---cccEEEEecCCC
Confidence 345789999986 344545666777766654 256666543 333322111 11 677766422221
Q ss_pred hHHHHHHhhhcCCCcEEEeecCCCCCCCCCCCeEEEccCChHHHHHHHHHHHHHcCCcEEEEEEecC--CcCcchHHHHH
Q 002371 103 MAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDD--DQGRNGVTALG 180 (930)
Q Consensus 103 ~~~av~~~~~~~~vp~is~~a~~~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~~~w~~vaii~~d~--~~g~~~~~~~~ 180 (930)
.... ...+.+.++|+|......+ + +.+..+..++...+..+++++...|.++++++..+. .......+.|.
T Consensus 69 ~~~~-~~~l~~~~iPvV~~~~~~~---~---~~~~~V~~D~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~ 141 (277)
T 3cs3_A 69 PTKE-IEKFAERGHSIVVLDRTTE---H---RNIRQVLLDNRGGATQAIEQFVNVGSKKVLLLSGPEKGYDSQERLAVST 141 (277)
T ss_dssp CHHH-HHHHHHTTCEEEESSSCCC---S---TTEEEEEECHHHHHHHHHHHHHHTTCSCEEEEECCTTSHHHHHHHHHHH
T ss_pred CHHH-HHHHHhcCCCEEEEecCCC---C---CCCCEEEeCcHHHHHHHHHHHHHcCCceEEEEeCCccCccHHHHHHHHH
Confidence 2222 3345568999998754322 1 124455567777788888998888999999998653 23455678899
Q ss_pred HHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcC---CceEEEEEcchhhHHHHHHHHHHcCCCCCceEEEE
Q 002371 181 DKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMM---EARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIA 252 (930)
Q Consensus 181 ~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~---~~~viv~~~~~~~~~~~~~~a~~~g~~~~~~~~i~ 252 (930)
+++++.|+++. .. ... .+..+-...+.++.+. ++++|+ +.+...+..+++++++.|+..++-+.+.
T Consensus 142 ~~l~~~g~~~~-~~--~~~--~~~~~~~~~~~~~l~~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di~vv 210 (277)
T 3cs3_A 142 RELTRFGIPYE-II--QGD--FTEPSGYAAAKKILSQPQTEPVDVF-AFNDEMAIGVYKYVAETNYQMGKDIRII 210 (277)
T ss_dssp HHHHHTTCCEE-EE--ECC--SSHHHHHHHHHHHTTSCCCSSEEEE-ESSHHHHHHHHHHHTTSSCCBTTTEEEE
T ss_pred HHHHHcCCCee-EE--eCC--CChhHHHHHHHHHHhcCCCCCcEEE-EcChHHHHHHHHHHHHcCCCCCCcEEEE
Confidence 99999998765 21 111 2244455566666554 567755 4566678889999999998654444443
No 136
>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A*
Probab=97.78 E-value=0.0013 Score=70.44 Aligned_cols=207 Identities=12% Similarity=-0.004 Sum_probs=119.6
Q ss_pred ceEEEeEEee---cCC-CcchHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccCC
Q 002371 25 EVLNVGAIFS---FGT-VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQS 100 (930)
Q Consensus 25 ~~I~IG~~~~---l~~-~~G~~~~~a~~lAve~iN~~ggil~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~ 100 (930)
++.+||+++| ++. .+-.....|++-+.++. |+++.+. ++..+.. .......|+++++++||....
T Consensus 3 ~~~~Ig~v~~~g~~~d~~f~~~~~~Gi~~~~~~~--------g~~~~~~--~~~~~~~-~~~~l~~l~~~~~dgIi~~~~ 71 (318)
T 2fqx_A 3 GDFVVGMVTDSGDIDDKSFNQQVWEGISRFAQEN--------NAKCKYV--TASTDAE-YVPSLSAFADENMGLVVACGS 71 (318)
T ss_dssp CCCEEEEEESSSCTTSSSHHHHHHHHHHHHHHHT--------TCEEEEE--ECCSGGG-HHHHHHHHHHTTCSEEEEEST
T ss_pred CCcEEEEEEcCCCCCCccHHHHHHHHHHHHHHHh--------CCeEEEE--eCCCHHH-HHHHHHHHHHcCCCEEEECCh
Confidence 4578999997 333 34445566777766663 5555443 3332222 345567788888888886432
Q ss_pred hhhHHHHHHhhhcC-CCcEEEeecCCCCCCCCCCCeEEEccCChHHHHHHH----HHHHHHcCC-cEEEEEEec-CCcCc
Q 002371 101 AVMAHVLSHLANEL-QVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAI----AEMVSYFGW-GEVIAIFND-DDQGR 173 (930)
Q Consensus 101 S~~~~av~~~~~~~-~vp~is~~a~~~~ls~~~~~~~fr~~p~~~~~~~ai----~~~l~~~~w-~~vaii~~d-~~~g~ 173 (930)
.. ..++..++.++ ++|++......+. . +.+-.... +..++..+ +.++...|. ++|++|... .+...
T Consensus 72 ~~-~~~~~~~a~~~p~~p~v~id~~~~~--~---~~~~~v~~-d~~~~~~lag~~a~~l~~~Gh~r~Ig~i~g~~~~~~~ 144 (318)
T 2fqx_A 72 FL-VEAVIETSARFPKQKFLVIDAVVQD--R---DNVVSAVF-GQNEGSFLVGVAAALKAKEAGKSAVGFIVGMELGMMP 144 (318)
T ss_dssp TT-HHHHHHHHHHCTTSCEEEESSCCCS--C---TTEEEEEE-CHHHHHHHHHHHHHHHHHHTTCCEEEEEESCCSTTTH
T ss_pred hH-HHHHHHHHHHCCCCEEEEEcCccCC--C---CCEEEEEe-chHHHHHHHHHHHHHHhccCCCcEEEEEeCcccHHHH
Confidence 22 22355555554 8999876543210 1 12222222 33344333 467777787 899999753 33345
Q ss_pred chHHHHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchhhHHHHHHHHHHcCCCCCceEEEE
Q 002371 174 NGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIA 252 (930)
Q Consensus 174 ~~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~~~~~~~~~a~~~g~~~~~~~~i~ 252 (930)
.....|.+.+++.|..+.....+... -.+...-.....++.+.++|+|+.. ....+..+++++++.|+. +.-+++.
T Consensus 145 ~r~~Gf~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~a~~ll~~~~daI~~~-~d~~a~Gv~~a~~e~g~~-P~dv~vi 220 (318)
T 2fqx_A 145 LFEAGFEAGVKAVDPDIQVVVEVANT-FSDPQKGQALAAKLYDSGVNVIFQV-AGGTGNGVIKEARDRRLN-GQDVWVI 220 (318)
T ss_dssp HHHHHHHHHHHHHCTTCEEEEEECSC-SSCHHHHHHHHHHHHHTTCCEEEEE-CGGGHHHHHHHHHHHHHT-TCCCEEE
T ss_pred HHHHHHHHHHHHHCCCCEEEEEEccC-ccCHHHHHHHHHHHHHCCCcEEEEC-CCCCchHHHHHHHhhhhc-cCCcEEE
Confidence 56788999999888654332223211 0112333344556656689986654 455677888999998877 4434433
No 137
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=97.78 E-value=0.0007 Score=72.89 Aligned_cols=206 Identities=7% Similarity=-0.030 Sum_probs=133.8
Q ss_pred ceEEEeEEeecC-CCcchHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEE-ccCChh
Q 002371 25 EVLNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIV-GPQSAV 102 (930)
Q Consensus 25 ~~I~IG~~~~l~-~~~G~~~~~a~~lAve~iN~~ggil~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aii-Gp~~S~ 102 (930)
+..+||+++|-. ..+-.....|++-++++. |+++. +.++..++..-......+++++|++|| -|..+.
T Consensus 2 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~--~~~~~~~~~~~~~~i~~~~~~~vdgiIi~~~~~~ 71 (330)
T 3uug_A 2 DKGSVGIAMPTKSSARWIDDGNNIVKQLQEA--------GYKTD--LQYADDDIPNQLSQIENMVTKGVKVLVIASIDGT 71 (330)
T ss_dssp CCCEEEEEECCSSSTHHHHHHHHHHHHHHHT--------TCEEE--EEECTTCHHHHHHHHHHHHHHTCSEEEECCSSGG
T ss_pred CCcEEEEEeCCCcchHHHHHHHHHHHHHHHc--------CCEEE--EeeCCCCHHHHHHHHHHHHHcCCCEEEEEcCCch
Confidence 356899999964 455556777888777772 55544 556778888888888999999988887 444444
Q ss_pred hHHHHHHhhhcCCCcEEEeecCCCCCCCCCCCeEEEccCChHHHHHHHHHHHHH-------cCCcEEEEEEecC--CcCc
Q 002371 103 MAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSY-------FGWGEVIAIFNDD--DQGR 173 (930)
Q Consensus 103 ~~~av~~~~~~~~vp~is~~a~~~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~-------~~w~~vaii~~d~--~~g~ 173 (930)
........+...++|+|......+.. .... .....++...+..+++++.. .|.++++++.... ...+
T Consensus 72 ~~~~~~~~~~~~giPvV~~~~~~~~~--~~~~--~~V~~D~~~~g~~a~~~l~~~~~~~~~~G~~~i~~i~g~~~~~~~~ 147 (330)
T 3uug_A 72 TLSDVLKQAGEQGIKVIAYDRLIRNS--GDVS--YYATFDNFQVGVLQATSITDKLGLKDGKGPFNIELFGGSPDDNNAF 147 (330)
T ss_dssp GGHHHHHHHHHTTCEEEEESSCCCSC--TTCC--EEEEECHHHHHHHHHHHHHHHHTGGGTCCCEEEEECBCCTTCHHHH
T ss_pred hHHHHHHHHHHCCCCEEEECCCCCCC--Ccee--EEEEeCHHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCCchHH
Confidence 44555667778899999876543321 1122 33445777778888888777 6889999996432 2334
Q ss_pred chHHHHHHHHHhc---C-cEEEEEE-----ecCCCCCCChhHHHHHHHHHhc-----CCceEEEEEcchhhHHHHHHHHH
Q 002371 174 NGVTALGDKLAEI---R-CKISYKS-----ALPPDQSVTETDVRNELVKVRM-----MEARVIVVHGYSRTGLMVFDVAQ 239 (930)
Q Consensus 174 ~~~~~~~~~l~~~---g-~~i~~~~-----~~~~~~~~~~~d~~~~l~~l~~-----~~~~viv~~~~~~~~~~~~~~a~ 239 (930)
...+.|.+++++. | +++.... ..... .+...-...+.++.+ .++++|+ +.+...+..++++++
T Consensus 148 ~R~~Gf~~al~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~ai~-~~nd~~A~g~~~al~ 224 (330)
T 3uug_A 148 FFYDGAMSVLKPYIDSGKLVVKSGQMGMDKVGTLR--WDPATAQARMDNLLSAYYTDAKVDAVL-SPYDGLSIGIISSLK 224 (330)
T ss_dssp HHHHHHHHHHHHHHHHTSEECTTCCCSHHHHBCGG--GCHHHHHHHHHHHHHHHCSSSCCCEEE-CSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCceEEeecccccccccCCC--CCHHHHHHHHHHHHHhcCCCCCeEEEE-ECCCchHHHHHHHHH
Confidence 5568888888886 3 5443211 00111 112333334444443 4567654 556677889999999
Q ss_pred HcCCCCCc
Q 002371 240 RLGMMDSG 247 (930)
Q Consensus 240 ~~g~~~~~ 247 (930)
+.|+..++
T Consensus 225 ~~g~~vP~ 232 (330)
T 3uug_A 225 GVGYGTKD 232 (330)
T ss_dssp HTTCSSSS
T ss_pred HcCCCCCC
Confidence 99986543
No 138
>3ksx_A Nitrate transport protein; SSUA, alkanesulfonate-binding protein, periplasmic-binding P transport protein; HET: MPO; 1.70A {Xanthomonas axonopodis PV} PDB: 3e4r_A* 3ksj_A*
Probab=97.74 E-value=0.00028 Score=75.91 Aligned_cols=93 Identities=23% Similarity=0.292 Sum_probs=60.1
Q ss_pred CCCCChHHhhhCCCeEEEEeCchhHHHHH---HhcCCCccc--eEeCCCHHHHHHHHHcCCcEEEEccchhhHHHHhcCc
Q 002371 677 SPIKGIDTLMTSNDRVGYQVGSFAENYLI---EELSIPKSR--LVALGSPEEYAIALENRTVAAVVDERPYIDLFLSDHC 751 (930)
Q Consensus 677 ~~i~sl~dL~~s~~~i~~~~~s~~~~~l~---~~~~~~~~~--~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~~ 751 (930)
++|++++||. |++|++..|+....++. +..+..... ++.. +..+...+|.+|++||++...++......+..
T Consensus 121 s~I~s~~DLk--Gk~i~v~~gs~~~~~~~~~l~~~Gl~~~~v~~v~~-~~~~~~~al~~G~vDa~~~~~p~~~~~~~~~~ 197 (324)
T 3ksx_A 121 SALRTVADLK--GKRIAFQKGSSAHNLLLRVLAKSGLSMRDITPLYL-SPANARAAFAAGQVDAWAIWDPWYSALTLDGS 197 (324)
T ss_dssp CSCCSGGGGT--TCEEEECTTSHHHHHHHHHHHHTTCCGGGSEEEEC-CHHHHHHHHHTTCCSEEEEETTHHHHHHHTTS
T ss_pred CCCCCHHHhC--CCEEEecCCChHHHHHHHHHHHcCCCHHHeEEEeC-CHHHHHHHHHcCCCCEEEEccHHHHHHHhcCC
Confidence 4799999996 99999998775544332 234444333 3444 78899999999999999988888776655432
Q ss_pred -ceEEeCCccccCccEEEecCC
Q 002371 752 -QFSVRGQEFTKSGWGFAFPRD 772 (930)
Q Consensus 752 -~l~~~~~~~~~~~~~~~~~k~ 772 (930)
+.......+......++++++
T Consensus 198 ~~~l~~~~~~~~~~~~~~~~~~ 219 (324)
T 3ksx_A 198 ARLLANGEGLGLTGGFFLSSRR 219 (324)
T ss_dssp EEEEEESTTSCCCCEEEEEEHH
T ss_pred cEEEecccccCCCccEEEECHH
Confidence 333333333333344555554
No 139
>3uif_A Sulfonate ABC transporter, periplasmic sulfonate- protein SSUA; structural genomics; 2.60A {Methylobacillus flagellatus}
Probab=97.72 E-value=0.00018 Score=78.24 Aligned_cols=108 Identities=19% Similarity=0.047 Sum_probs=64.5
Q ss_pred CCCCChHHhhhCCCeEEEEeCchhHHHHH---HhcCCCccceEe-CCCHHHHHHHHHcCCcEEEEccchhhHHHHhcCcc
Q 002371 677 SPIKGIDTLMTSNDRVGYQVGSFAENYLI---EELSIPKSRLVA-LGSPEEYAIALENRTVAAVVDERPYIDLFLSDHCQ 752 (930)
Q Consensus 677 ~~i~sl~dL~~s~~~i~~~~~s~~~~~l~---~~~~~~~~~~~~-~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~~~ 752 (930)
++|++++||. |++|++..|+.....+. +..++....+.. .-+..+...+|.+|++||++...+..........+
T Consensus 109 s~i~s~~DLk--Gk~I~v~~gs~~~~~~~~~l~~~Gl~~~~v~~v~~~~~~~~~al~~G~vDa~~~~~~~~~~~~~g~~~ 186 (348)
T 3uif_A 109 STAKSIKDLK--GKKIALHRGRPWELAFSNLLQSEGLTFKDFKIVNVNPQVGAAALASGTVDGFFSLFDSYILEDRGVGK 186 (348)
T ss_dssp CCCCSGGGGT--TSEEEECTTSTHHHHHHHHHHHTTCCGGGSEEECCCHHHHHHHHHHTSSSEEEESTTHHHHHHTTSEE
T ss_pred CCCCCHHHcC--CCEEEecCCChHHHHHHHHHHHcCCCHHHeEEEECCHHHHHHHHHcCCCCEEEechHHHHHHhcCCcE
Confidence 3799999996 99999987776544332 334444333322 22677899999999999998877765433222212
Q ss_pred eEEeCCcc---ccCccEEEecCC----Cc-chhHHHHHHHhc
Q 002371 753 FSVRGQEF---TKSGWGFAFPRD----SP-LAIDMSTAILTL 786 (930)
Q Consensus 753 l~~~~~~~---~~~~~~~~~~k~----sp-l~~~~n~~i~~l 786 (930)
.......+ ......++++++ .| ....|.+++.+.
T Consensus 187 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~a~~~a 228 (348)
T 3uif_A 187 IIWSTKTAPVDWKLMGGVWARNDFVKQNPEITQAIVTAYLKS 228 (348)
T ss_dssp EEEEGGGSCGGGSCCEEEEEEHHHHHHCHHHHHHHHHHHHHH
T ss_pred EEEeccccCCCCcceeEEEECHHHHHHCHHHHHHHHHHHHHH
Confidence 22211111 122346667765 45 666666655443
No 140
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=97.70 E-value=0.00042 Score=72.51 Aligned_cols=200 Identities=10% Similarity=0.041 Sum_probs=122.1
Q ss_pred ceEEEeEEeecC-CCcchHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccCChhh
Q 002371 25 EVLNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVM 103 (930)
Q Consensus 25 ~~I~IG~~~~l~-~~~G~~~~~a~~lAve~iN~~ggil~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~S~~ 103 (930)
..-+||+++|-. ..+-.....+++-++++. |+++. +.++..++..-......++++++++||-...+
T Consensus 7 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~--------g~~~~--~~~~~~~~~~~~~~~~~l~~~~~dgiIi~~~~-- 74 (277)
T 3e61_A 7 KSKLIGLLLPDMSNPFFTLIARGVEDVALAH--------GYQVL--IGNSDNDIKKAQGYLATFVSHNCTGMISTAFN-- 74 (277)
T ss_dssp ---CEEEEESCTTSHHHHHHHHHHHHHHHHT--------TCCEE--EEECTTCHHHHHHHHHHHHHTTCSEEEECGGG--
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHHHC--------CCEEE--EEeCCCCHHHHHHHHHHHHhCCCCEEEEecCC--
Confidence 456799999863 444455667777666652 45554 46666677777777788888888888853322
Q ss_pred HHHHHH-hhhcCCCcEEEeecCCCCCCCCCCCeEEEccCChHHHHHHHHHHHHHcCCcEEEEEEec--CCcCcchHHHHH
Q 002371 104 AHVLSH-LANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFND--DDQGRNGVTALG 180 (930)
Q Consensus 104 ~~av~~-~~~~~~vp~is~~a~~~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~~~w~~vaii~~d--~~~g~~~~~~~~ 180 (930)
. .... .+...++|+|......+.. . ....++...+..+++++...|.++++++..+ ........+.|.
T Consensus 75 ~-~~~~~~l~~~~iPvV~~~~~~~~~-----~---~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~ 145 (277)
T 3e61_A 75 E-NIIENTLTDHHIPFVFIDRINNEH-----N---GISTNHFKGGQLQAEVVRKGKGKNVLIVHENLLIDAFHQRVQGIK 145 (277)
T ss_dssp H-HHHHHHHHHC-CCEEEGGGCC-----------------HHHHHHHHHHHHHHTTCCSEEEEESCTTSHHHHHHHHHHH
T ss_pred h-HHHHHHHHcCCCCEEEEeccCCCC-----C---eEEechHHHHHHHHHHHHHCCCCeEEEEeCCCCCccHHHHHHHHH
Confidence 2 2244 6667799999876543211 1 5566777778889999988999999999854 334455678999
Q ss_pred HHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchhhHHHHHHHHHHcCCCCCceEEEE
Q 002371 181 DKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIA 252 (930)
Q Consensus 181 ~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~~~~~~~~~a~~~g~~~~~~~~i~ 252 (930)
+++++.|+.+.. ...... .....+.. +.+ ..++++|+. .+...+..+++++++.|+..++-+-+.
T Consensus 146 ~~l~~~~~~~~~-~~~~~~--~~~~~~~~-l~~--~~~~~ai~~-~~d~~a~g~~~al~~~g~~vP~di~vi 210 (277)
T 3e61_A 146 YILDQQRIDYKM-LEATLL--DNDKKFID-LIK--ELSIDSIIC-SNDLLAINVLGIVQRYHFKVPAEIQII 210 (277)
T ss_dssp HHHHC---CEEE-EEGGGG--GSHHHHHH-HHH--HHTCCEEEE-SSHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred HHHHHcCCCccc-eecCCC--CHHHHHHH-hhc--CCCCCEEEE-CCcHHHHHHHHHHHHcCCCCCCceEEE
Confidence 999999987764 222111 11222222 222 246777654 566778889999999998755434333
No 141
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=97.69 E-value=0.0016 Score=70.44 Aligned_cols=206 Identities=9% Similarity=0.016 Sum_probs=133.2
Q ss_pred ceEEEeEEeecC-CCcchHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEc-cCChh
Q 002371 25 EVLNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVG-PQSAV 102 (930)
Q Consensus 25 ~~I~IG~~~~l~-~~~G~~~~~a~~lAve~iN~~ggil~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiG-p~~S~ 102 (930)
..-.||++.|-. ..+-.....|++-++++. |+++. +.++..++..-......++.++|++||= |....
T Consensus 61 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~ 130 (339)
T 3h5o_A 61 KSRTVLVLIPSLANTVFLETLTGIETVLDAA--------GYQML--IGNSHYDAGQELQLLRAYLQHRPDGVLITGLSHA 130 (339)
T ss_dssp --CEEEEEESCSTTCTTHHHHHHHHHHHHHT--------TCEEE--EEECTTCHHHHHHHHHHHHTTCCSEEEEECSCCC
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHHHHC--------CCEEE--EEeCCCChHHHHHHHHHHHcCCCCEEEEeCCCCC
Confidence 456899999863 445556778888777762 56654 5677778877777788888888887763 22222
Q ss_pred hHHHHHHhhhcCCCcEEEeecCCCCCCCCCCCeEEEccCChHHHHHHHHHHHHHcCCcEEEEEEecC-CcCcchHHHHHH
Q 002371 103 MAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDD-DQGRNGVTALGD 181 (930)
Q Consensus 103 ~~~av~~~~~~~~vp~is~~a~~~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~~~w~~vaii~~d~-~~g~~~~~~~~~ 181 (930)
. .....+...++|++...... .. +.. ....++...+..+++++...|.++++++.... .......+.|.+
T Consensus 131 ~--~~~~~l~~~~iPvV~~~~~~----~~--~~~-~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~R~~Gf~~ 201 (339)
T 3h5o_A 131 E--PFERILSQHALPVVYMMDLA----DD--GRC-CVGFSQEDAGAAITRHLLSRGKRRIGFLGAQLDERVMKRLDGYRA 201 (339)
T ss_dssp T--THHHHHHHTTCCEEEEESCC----SS--SCC-EEECCHHHHHHHHHHHHHHTTCCSEEEEEESCCHHHHHHHHHHHH
T ss_pred H--HHHHHHhcCCCCEEEEeecC----CC--CCe-EEEECHHHHHHHHHHHHHHCCCCeEEEEeCCCCccHHHHHHHHHH
Confidence 1 34455677899999874321 11 122 55667777788888999999999999998653 334456788999
Q ss_pred HHHhcCcEEE-EEEecCCCCCCChhHHHHHHHHHhc--CCceEEEEEcchhhHHHHHHHHHHcCCCCCceEEEE
Q 002371 182 KLAEIRCKIS-YKSALPPDQSVTETDVRNELVKVRM--MEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIA 252 (930)
Q Consensus 182 ~l~~~g~~i~-~~~~~~~~~~~~~~d~~~~l~~l~~--~~~~viv~~~~~~~~~~~~~~a~~~g~~~~~~~~i~ 252 (930)
++++.|+... ........ .+..+-...+.++.+ .++++|| +.+...+..+++++++.|+..++-+-+.
T Consensus 202 al~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~ll~~~~~~~ai~-~~nD~~A~g~~~al~~~G~~vP~disvv 272 (339)
T 3h5o_A 202 ALDAADCRDAGLEWLDPQP--SSMQMGADMLDRALAERPDCDALF-CCNDDLAIGALARSQQLGIAVPERLAIA 272 (339)
T ss_dssp HHHHTTCCCGGGEEEECSC--CCHHHHHHHHHHHHHHCTTCCEEE-ESSHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred HHHHCCCCCCChheEecCC--CCHHHHHHHHHHHHcCCCCCcEEE-ECChHHHHHHHHHHHHcCCCCCCCEEEE
Confidence 9999987211 01111111 223444445555543 3577765 5667788889999999998755434333
No 142
>2x26_A Periplasmic aliphatic sulphonates-binding protein; transport protein; 1.75A {Escherichia coli}
Probab=97.68 E-value=0.00035 Score=74.48 Aligned_cols=121 Identities=17% Similarity=0.213 Sum_probs=74.3
Q ss_pred CCCChHHhhhCCCeEEEEeCchhHHHHH---HhcCCCccceE-eCCCHHHHHHHHHcCCcEEEEccchhhHHHHhcCcce
Q 002371 678 PIKGIDTLMTSNDRVGYQVGSFAENYLI---EELSIPKSRLV-ALGSPEEYAIALENRTVAAVVDERPYIDLFLSDHCQF 753 (930)
Q Consensus 678 ~i~sl~dL~~s~~~i~~~~~s~~~~~l~---~~~~~~~~~~~-~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~~~l 753 (930)
+|++++||. |++|++..|+....++. +..+.....+. .+.+..+.+.++.+|++||++...++..+...+. .+
T Consensus 96 ~i~s~~dL~--Gk~i~~~~gs~~~~~l~~~l~~~Gl~~~~v~~~~~~~~~~~~al~~G~vDa~~~~~~~~~~~~~~~-~~ 172 (308)
T 2x26_A 96 PIKTVADLK--GHKVAFQKGSSSHNLLLRALRQAGLKFTDIQPTYLTPADARAAFQQGNVDAWAIWDPYYSAALLQG-GV 172 (308)
T ss_dssp SCCSGGGGT--TSEEEECTTSHHHHHHHHHHHHTTCCGGGSEEEECCHHHHHHHHHTTSSSEEEEETTHHHHHHHHS-SE
T ss_pred CCCCHHHcC--CCEEeeeCCCcHHHHHHHHHHHcCCCHHHeEEEecChHHHHHHHHcCCCCEEEecchhHHHHHhcC-Cc
Confidence 688999996 88999987776554432 23444433332 3456888999999999999998888877765543 34
Q ss_pred EEeCC--ccccCccEEEec----CCCc-chhHHHHHHHhc----cccc-cHHHHHHhhcc
Q 002371 754 SVRGQ--EFTKSGWGFAFP----RDSP-LAIDMSTAILTL----SENG-ELQRIHDKWLR 801 (930)
Q Consensus 754 ~~~~~--~~~~~~~~~~~~----k~sp-l~~~~n~~i~~l----~e~G-~~~~~~~~~~~ 801 (930)
+++.. .+......+++. +..| +...|++++.+. .+++ ...++..+|+.
T Consensus 173 ~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~al~~a~~~~~~~~~~~~~~~~~~~~ 232 (308)
T 2x26_A 173 RVLKDGTDLNQTGSFYLAARPYAEKNGAFIQGVLATFSEADALTRSQREQSIALLAKTMG 232 (308)
T ss_dssp EEEEESTTSCCCCEEEEEEHHHHHHTHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHT
T ss_pred EEEecCCCcCCcceEEEEcHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHhC
Confidence 44422 221222223333 3345 788888877763 3333 34455555543
No 143
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=97.66 E-value=0.00087 Score=71.28 Aligned_cols=207 Identities=10% Similarity=0.034 Sum_probs=130.9
Q ss_pred CCceEEEeEEeec------CCCcchHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEE
Q 002371 23 KPEVLNVGAIFSF------GTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIV 96 (930)
Q Consensus 23 ~~~~I~IG~~~~l------~~~~G~~~~~a~~lAve~iN~~ggil~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aii 96 (930)
....-+||+++|- +..+-.....|++-++++. |+++. +.++..++..-......+.+++|++||
T Consensus 19 ~~~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdgiI 88 (305)
T 3huu_A 19 TNKTLTIGLIQKSSAPEIRQNPFNSDVLNGINQACNVR--------GYSTR--MTVSENSGDLYHEVKTMIQSKSVDGFI 88 (305)
T ss_dssp --CCCEEEEECSCCSHHHHTSHHHHHHHHHHHHHHHHH--------TCEEE--ECCCSSHHHHHHHHHHHHHTTCCSEEE
T ss_pred hCCCCEEEEEeCCCccccccCcHHHHHHHHHHHHHHHC--------CCEEE--EEeCCCChHHHHHHHHHHHhCCCCEEE
Confidence 3446789999986 3334455677777777764 45554 466666666666666677777888877
Q ss_pred c-cCChhhHHHHHHhhhcCCCcEEEeecCCCCCCCCCCCeEEEccCChHHHHHHHHHHHHHcCCcEEEEEEecCC--cCc
Q 002371 97 G-PQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD--QGR 173 (930)
Q Consensus 97 G-p~~S~~~~av~~~~~~~~vp~is~~a~~~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~~~w~~vaii~~d~~--~g~ 173 (930)
= |..... .....+...++|+|...... .....+ ....++...+..+++++...|.++++++..+.. ..+
T Consensus 89 i~~~~~~~--~~~~~l~~~~iPvV~i~~~~---~~~~~~---~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~ 160 (305)
T 3huu_A 89 LLYSLKDD--PIEHLLNEFKVPYLIVGKSL---NYENII---HIDNDNIDAAYQLTQYLYHLGHRHILFLQESGHYAVTE 160 (305)
T ss_dssp ESSCBTTC--HHHHHHHHTTCCEEEESCCC---SSTTCC---EEECCHHHHHHHHHHHHHHTTCCSEEEEEESSCBHHHH
T ss_pred EeCCcCCc--HHHHHHHHcCCCEEEECCCC---cccCCc---EEEeCHHHHHHHHHHHHHHCCCCeEEEEcCCcccchhH
Confidence 3 222222 34556677899999875432 112223 355677777888889999999999999986543 344
Q ss_pred chHHHHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHH-hc--CCceEEEEEcchhhHHHHHHHHHHcCCCCCc-eE
Q 002371 174 NGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKV-RM--MEARVIVVHGYSRTGLMVFDVAQRLGMMDSG-YV 249 (930)
Q Consensus 174 ~~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l-~~--~~~~viv~~~~~~~~~~~~~~a~~~g~~~~~-~~ 249 (930)
...+.|.+++++.|+.+.. .+... .+.-...+.++ .+ .++++|+ +.+...+..+++++++.|+..++ ..
T Consensus 161 ~R~~Gf~~~l~~~g~~~~~--~~~~~----~~~~~~~~~~~~l~~~~~~~ai~-~~nd~~A~g~~~al~~~g~~vP~di~ 233 (305)
T 3huu_A 161 DRSVGFKQYCDDVKISNDC--VVIKS----MNDLRDFIKQYCIDASHMPSVII-TSDVMLNMQLLNVLYEYQLRIPEDIQ 233 (305)
T ss_dssp HHHHHHHHHHHHTTCCCCE--EEECS----HHHHHHHC--------CCCSEEE-ESSHHHHHHHHHHHHHTTCCTTTTCE
T ss_pred HHHHHHHHHHHHcCCCccc--EEecC----cHHHHHHHHHhhhcCCCCCCEEE-ECChHHHHHHHHHHHHcCCCCCcceE
Confidence 5678999999999987653 12211 11133344454 33 4567765 56677888899999999987543 33
Q ss_pred EEEeC
Q 002371 250 WIATT 254 (930)
Q Consensus 250 ~i~~~ 254 (930)
.++.|
T Consensus 234 vig~D 238 (305)
T 3huu_A 234 TATFN 238 (305)
T ss_dssp EEEES
T ss_pred EEEEC
Confidence 44444
No 144
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=97.64 E-value=0.00069 Score=70.92 Aligned_cols=199 Identities=9% Similarity=-0.005 Sum_probs=133.1
Q ss_pred CCceEEEeEEeecC-CCcchHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccCCh
Q 002371 23 KPEVLNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSA 101 (930)
Q Consensus 23 ~~~~I~IG~~~~l~-~~~G~~~~~a~~lAve~iN~~ggil~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~S 101 (930)
....-+||+++|-. ..+-.....|++-++++. |+++ +.+.++..++..-......+++++|++||-..
T Consensus 7 ~~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~~-~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~-- 75 (277)
T 3hs3_A 7 QKKSKMIGIIIPDLNNRFYAQIIDGIQEVIQKE--------GYTA-LISFSTNSDVKKYQNAIINFENNNVDGIITSA-- 75 (277)
T ss_dssp -CCCCEEEEEESCTTSHHHHHHHHHHHHHHHHT--------TCEE-EEEECSSCCHHHHHHHHHHHHHTTCSEEEEEC--
T ss_pred cCCCCEEEEEeCCCCChhHHHHHHHHHHHHHHC--------CCCE-EEEEeCCCChHHHHHHHHHHHhCCCCEEEEcc--
Confidence 34567899999863 444455667777766662 5551 44567777888777778888888888877432
Q ss_pred hhHHHHHHhhhcCCCcEEEeecC-CCCCCCCCCCeEEEccCChHHHHHHHHHHHHHcCCcEEEEEEec--CCcCcchHHH
Q 002371 102 VMAHVLSHLANELQVPLLSFTAL-DPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFND--DDQGRNGVTA 178 (930)
Q Consensus 102 ~~~~av~~~~~~~~vp~is~~a~-~~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~~~w~~vaii~~d--~~~g~~~~~~ 178 (930)
.....+...++|+|..... .+ + +.+ ....++...+..+++++. .|.++++++... ........+.
T Consensus 76 ----~~~~~~~~~~iPvV~~~~~~~~---~---~~~-~V~~D~~~~g~~a~~~L~-~G~~~I~~i~~~~~~~~~~~R~~G 143 (277)
T 3hs3_A 76 ----FTIPPNFHLNTPLVMYDSANIN---D---DIV-RIVSNNTKGGKESIKLLS-KKIEKVLIQHWPLSLPTIRERIEA 143 (277)
T ss_dssp ----CCCCTTCCCSSCEEEESCCCCC---S---SSE-EEEECHHHHHHHHHHTSC-TTCCEEEEEESCTTSHHHHHHHHH
T ss_pred ----hHHHHHHhCCCCEEEEcccccC---C---CCE-EEEEChHHHHHHHHHHHH-hCCCEEEEEeCCCcCccHHHHHHH
Confidence 1123456779999987554 22 1 223 666777777888888888 999999999854 3334556789
Q ss_pred HHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhc--CCceEEEEEcchhhHHHHHHHHHHcCCCCCceEEEE
Q 002371 179 LGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRM--MEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIA 252 (930)
Q Consensus 179 ~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~--~~~~viv~~~~~~~~~~~~~~a~~~g~~~~~~~~i~ 252 (930)
|.+++++.|+++... ..... .+ ...+.++.+ .++++|+ +.+...+..+++++++.|+..++-+-+.
T Consensus 144 f~~~l~~~g~~~~~~-~~~~~---~~---~~~~~~~l~~~~~~~ai~-~~~d~~A~g~~~al~~~g~~vP~di~vi 211 (277)
T 3hs3_A 144 MTAEASKLKIDYLLE-ETPEN---NP---YISAQSALNKSNQFDAII-TVNDLYAAEIIKEAKRRNLKIPDDFQLV 211 (277)
T ss_dssp HHHHHHHTTCEEEEE-ECCSS---CH---HHHHHHHHHTGGGCSEEE-CSSHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred HHHHHHHCCCCCCCC-CccCC---ch---HHHHHHHHcCCCCCCEEE-ECCHHHHHHHHHHHHHcCCCCCCceEEE
Confidence 999999999988755 33322 12 344444443 3567654 4566778889999999998755434333
No 145
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=97.60 E-value=0.0015 Score=72.75 Aligned_cols=212 Identities=9% Similarity=0.018 Sum_probs=130.4
Q ss_pred CCCceEEEeEEeecCCCcchHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccCCh
Q 002371 22 LKPEVLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSA 101 (930)
Q Consensus 22 ~~~~~I~IG~~~~l~~~~G~~~~~a~~lAve~iN~~ggil~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~S 101 (930)
.....-+||+++|.+..+-.....|++-++++. |+.+.+...++.. .....+.+++|++||-...
T Consensus 21 ~~~~s~~Igvv~~~~~~f~~~l~~gi~~~a~~~--------g~~~~i~~~~~~~------~~i~~l~~~~vDGiIi~~~- 85 (412)
T 4fe7_A 21 MFTKRHRITLLFNANKAYDRQVVEGVGEYLQAS--------QSEWDIFIEEDFR------ARIDKIKDWLGDGVIADFD- 85 (412)
T ss_dssp CCCCCEEEEEECCTTSHHHHHHHHHHHHHHHHH--------TCCEEEEECC-CC--------------CCCSEEEEETT-
T ss_pred CCCCCceEEEEeCCcchhhHHHHHHHHHHHHhc--------CCCeEEEecCCcc------chhhhHhcCCCCEEEEecC-
Confidence 345578999999976666667788888877774 4566655543321 1245566678888886322
Q ss_pred hhHHHHHHhhhcCCCcEEEeecCCCCCCCCCCCeEEEccCChHHHHHHHHHHHHHcCCcEEEEEEecCCc----CcchHH
Q 002371 102 VMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQ----GRNGVT 177 (930)
Q Consensus 102 ~~~~av~~~~~~~~vp~is~~a~~~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~~~w~~vaii~~d~~~----g~~~~~ 177 (930)
.......+.+.++|+|..+...+... ..+.+-.+..++..-+..+++++...|.++++++...... .....+
T Consensus 86 --~~~~~~~l~~~~iPvV~i~~~~~~~~--~~~~~~~V~~D~~~~g~~a~~~L~~~G~r~I~~i~~~~~~~~~~~~~R~~ 161 (412)
T 4fe7_A 86 --DKQIEQALADVDVPIVGVGGSYHLAE--SYPPVHYIATDNYALVESAFLHLKEKGVNRFAFYGLPESSGKRWATEREY 161 (412)
T ss_dssp --CHHHHHHHTTCCSCEEEEEECCSSGG--GSCSSEEEEECHHHHHHHHHHHHHHTTCCEEEEECCCTTSCCHHHHHHHH
T ss_pred --ChHHHHHHhhCCCCEEEecCCccccc--cCCCCCEEEeCHHHHHHHHHHHHHHcCCceEEEecccccccccHHHHHHH
Confidence 23345667778999998765433211 1123344566777778888999999999999999865433 456678
Q ss_pred HHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhc--CCceEEEEEcchhhHHHHHHHHHHcCCCCCc-eEEEEeC
Q 002371 178 ALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRM--MEARVIVVHGYSRTGLMVFDVAQRLGMMDSG-YVWIATT 254 (930)
Q Consensus 178 ~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~--~~~~viv~~~~~~~~~~~~~~a~~~g~~~~~-~~~i~~~ 254 (930)
.|.+++++.|+........... ..+..+....+.++.+ .++++|+ +.+...+..+++++++.|+..++ ...++.|
T Consensus 162 Gf~~al~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~aI~-~~nD~~A~g~~~al~~~G~~vP~disvig~D 239 (412)
T 4fe7_A 162 AFRQLVAEEKYRGVVYQGLETA-PENWQHAQNRLADWLQTLPPQTGII-AVTDARARHILQVCEHLHIPVPEKLCVIGID 239 (412)
T ss_dssp HHHHHHTTSSSCCEEECCSCSS-CSSHHHHHHHHHHHHHHSCTTEEEE-ESSHHHHHHHHHHHHHHTCCTTTTSEEEESS
T ss_pred HHHHHHHHcCCCcccccccccc-ccchhhHHHHHHHHHHhCCCCeEEE-EEecHHHHHHHHHHHHcCCCCCceEEEEeec
Confidence 9999999999764322211111 0112233334444332 4567755 55677788899999999987544 4444444
No 146
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=97.57 E-value=0.0024 Score=68.80 Aligned_cols=201 Identities=10% Similarity=0.002 Sum_probs=130.0
Q ss_pred CceEEEeEEeecC-CCcchHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccCChh
Q 002371 24 PEVLNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAV 102 (930)
Q Consensus 24 ~~~I~IG~~~~l~-~~~G~~~~~a~~lAve~iN~~ggil~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~S~ 102 (930)
...-+||++.|-. ..+-.....+++-++++. |+.+.+. ++.. +..-......++.+++++||-...
T Consensus 62 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~~--~~~~-~~~~~~~~~~l~~~~vdGiIi~~~-- 128 (333)
T 3jvd_A 62 HRSALVGVIVPDLSNEYYSESLQTIQQDLKAA--------GYQMLVA--EANS-VQAQDVVMESLISIQAAGIIHVPV-- 128 (333)
T ss_dssp --CCEEEEEESCSSSHHHHHHHHHHHHHHHHH--------TCEEEEE--ECCS-HHHHHHHHHHHHHHTCSEEEECCC--
T ss_pred CCCCEEEEEeCCCcChHHHHHHHHHHHHHHHC--------CCEEEEE--CCCC-hHHHHHHHHHHHhCCCCEEEEcch--
Confidence 3456899999863 444456677887777764 5666554 4444 666666677777788988885433
Q ss_pred hHHHHHHhhhcCCCcEEEeecCCCCCCCCCCCeEEEccCChHHHHHHHHHHHHHcCCcEEEEEEecCC--cCcchHHHHH
Q 002371 103 MAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD--QGRNGVTALG 180 (930)
Q Consensus 103 ~~~av~~~~~~~~vp~is~~a~~~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~~~w~~vaii~~d~~--~g~~~~~~~~ 180 (930)
...+...++|+|......+. ...+ ....++...+..+++++...|.++++++..... ......+.|.
T Consensus 129 -----~~~~~~~~iPvV~~~~~~~~---~~~~---~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~ 197 (333)
T 3jvd_A 129 -----VGSIAPEGIPMVQLTRGELG---PGFP---RVLCDDEAGFFQLTESVLGGSGMNIAALVGEESLSTTQERMRGIS 197 (333)
T ss_dssp -----TTCCC-CCSCEEEECC-------CCSC---EEEECHHHHHHHHHHHHCCSSSCEEEEEESCTTSHHHHHHHHHHH
T ss_pred -----HHHHhhCCCCEEEECccCCC---CCCC---EEEEChHHHHHHHHHHHHHCCCCeEEEEeCCCCCccHHHHHHHHH
Confidence 34456779999987554321 2233 345567777888888998899999999986532 3455678999
Q ss_pred HHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCC-ceEEEEEcchhhHHHHHHHHHHcCCCCCc-eEEEEeC
Q 002371 181 DKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMME-ARVIVVHGYSRTGLMVFDVAQRLGMMDSG-YVWIATT 254 (930)
Q Consensus 181 ~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~-~~viv~~~~~~~~~~~~~~a~~~g~~~~~-~~~i~~~ 254 (930)
+++++.|+... .... . .+.++....+.++.+.. +++|+ +.+...+..+++++++.|+..++ ...++-|
T Consensus 198 ~al~~~g~~~~--~~~~-~--~~~~~~~~~~~~ll~~~~~~ai~-~~nd~~A~g~~~al~~~G~~vP~disvig~D 267 (333)
T 3jvd_A 198 HAASIYGAEVT--FHFG-H--YSVESGEEMAQVVFNNGLPDALI-VASPRLMAGVMRAFTRLNVRVPHDVVIGGYD 267 (333)
T ss_dssp HHHHHTTCEEE--EEEC-C--SSHHHHHHHHHHHHHTCCCSEEE-ECCHHHHHHHHHHHHHTTCCTTTTCEEEEES
T ss_pred HHHHHCCCCEE--EecC-C--CCHHHHHHHHHHHhcCCCCcEEE-ECCHHHHHHHHHHHHHcCCCCCCceEEEEEC
Confidence 99999998822 1111 1 12444455556555443 77765 55667788899999999987544 3344433
No 147
>3un6_A Hypothetical protein saouhsc_00137; structural genomics, center for structural genomics of infec diseases, csgid; 2.01A {Staphylococcus aureus subsp}
Probab=97.56 E-value=0.00013 Score=79.08 Aligned_cols=122 Identities=11% Similarity=0.123 Sum_probs=75.5
Q ss_pred CCCCChHHh-hhCCCeEEEEeCchhHHHH----HHhcCCCcc--ceEeCCCHHHHHHHHHcCCcEEEEccchhhHHHHhc
Q 002371 677 SPIKGIDTL-MTSNDRVGYQVGSFAENYL----IEELSIPKS--RLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSD 749 (930)
Q Consensus 677 ~~i~sl~dL-~~s~~~i~~~~~s~~~~~l----~~~~~~~~~--~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~ 749 (930)
++|++++|| . |++||+..++....++ .+..+.... +++.+ +..+...+|.+|++||++...++......+
T Consensus 143 s~I~s~~DL~k--Gk~i~v~~~~s~~~~~~~~~l~~~Gl~~~dv~~~~~-~~~~~~~al~~G~vDa~~~~~p~~~~~~~~ 219 (341)
T 3un6_A 143 MHLNEFNNNGD--DYHFGIPHRYSTHYLLLEELRKQLKIKPGHFSYHEM-SPAEMPAALSEHRITGYSVAEPFGALGEKL 219 (341)
T ss_dssp CCGGGCCSSSS--CEEEEESCSSSHHHHHHHHHHHHTTCCTTSEEEEEC-CGGGHHHHHHTTSCSEEEEETTHHHHHHHS
T ss_pred CCCCCHHHhCC--CCEEEECCCCCHHHHHHHHHHHHcCCCHHHeEEEEc-ChHHHHHHHHcCCCCEEEecCCHHHHHHhc
Confidence 468899999 5 8899998754333321 234454433 44455 567889999999999999988887776655
Q ss_pred Cc-ceEEeCCcc-ccC-ccEEEecCC----Cc-----chhHHHHHHHhccccccHHHHHHhhcc
Q 002371 750 HC-QFSVRGQEF-TKS-GWGFAFPRD----SP-----LAIDMSTAILTLSENGELQRIHDKWLR 801 (930)
Q Consensus 750 ~~-~l~~~~~~~-~~~-~~~~~~~k~----sp-----l~~~~n~~i~~l~e~G~~~~~~~~~~~ 801 (930)
.. +.......+ ... ...++++++ .| +...+++++..+.+++.-.++..+|+.
T Consensus 220 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~~~a~~~a~~~~~~~~~~~~~~~~~~~ 283 (341)
T 3un6_A 220 GKGKTLKHGDDVIPDAYCCVLVLRGELLDQHKDVAQAFVQDYKKSGFKMNDRKQSVDIMTHHFK 283 (341)
T ss_dssp SCCEEEEEGGGTSTTCCCEEEEECHHHHHHCHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHSS
T ss_pred CCeEEEEeccccCCCCceEEEEECHHHHHHCHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHhC
Confidence 43 222222222 222 245666654 44 555666666667776543366666665
No 148
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=97.56 E-value=0.003 Score=68.51 Aligned_cols=204 Identities=9% Similarity=-0.021 Sum_probs=121.7
Q ss_pred ceEEEeEEeecC-CCcchHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCC-ChHHHHHHHHHHHhcCcEEEE--ccCC
Q 002371 25 EVLNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKF-NGFLSIMGALQFMETDTLAIV--GPQS 100 (930)
Q Consensus 25 ~~I~IG~~~~l~-~~~G~~~~~a~~lAve~iN~~ggil~g~~l~l~~~D~~~-~~~~a~~~a~~li~~~v~aii--Gp~~ 100 (930)
..-+||++.|-- ..+-.....|++-++++ .|+++.+. ++.. ++..-......++.++|++|| +|..
T Consensus 60 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~--------~g~~~~~~--~~~~~~~~~~~~~l~~l~~~~vdGiIi~~~~~ 129 (349)
T 1jye_A 60 QSLLIGVATSSLALHAPSQIVAAILSRADQ--------LGASVVVS--MVERSGVEACKTAVHNLLAQRVSGLIINYPLD 129 (349)
T ss_dssp --CEEEEEESCTTSHHHHHHHHHHHHHHHH--------TTCEEEEE--ECCSSSHHHHHHHHHHHHTTTCSCEEEESCCC
T ss_pred CCCEEEEEeCCCCcccHHHHHHHHHHHHHH--------cCCEEEEE--eCCCCcHHHHHHHHHHHHHCCCCEEEEecCCC
Confidence 457899999853 33333455666666654 25666553 4433 344445556677777777766 4544
Q ss_pred hhhHHHHHHhhhcCCCcEEEeecCCCCCCCCCCCeEEEccCChHHHHHHHHHHHHHcCCcEEEEEEecCC--cCcchHHH
Q 002371 101 AVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD--QGRNGVTA 178 (930)
Q Consensus 101 S~~~~av~~~~~~~~vp~is~~a~~~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~~~w~~vaii~~d~~--~g~~~~~~ 178 (930)
... .+...+...++|++...... ....++ ...++...+..+++++...|.+++++|..+.. ......+.
T Consensus 130 ~~~--~~~~~~~~~~iPvV~i~~~~----~~~~~~---V~~d~~~~~~~a~~~L~~~G~~~I~~i~g~~~~~~~~~R~~G 200 (349)
T 1jye_A 130 DQD--AIAVEAACTNVPALFLDVSD----QTPINS---IIFSHEDGTRLGVEHLVALGHQQIALLAGPLSSVSARLRLAG 200 (349)
T ss_dssp HHH--HHHHHHHTTTSCEEESSSCT----TSSSCE---EEECHHHHHHHHHHHHHHHTCCSEEEEECCTTSHHHHHHHHH
T ss_pred Chh--HHHHHHhhCCCCEEEEcccC----CCCCCE---EEEchHHHHHHHHHHHHHCCCCEEEEEeCCCCCccHHHHHHH
Confidence 322 22333456799999865321 122333 34556666777788888889999999986432 23455788
Q ss_pred HHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcC--CceEEEEEcchhhHHHHHHHHHHcCCCCCceEEEE
Q 002371 179 LGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIA 252 (930)
Q Consensus 179 ~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~--~~~viv~~~~~~~~~~~~~~a~~~g~~~~~~~~i~ 252 (930)
|.+++++.|+++.....-. .+..+-...+.++.+. .+++|| +.+...+..+++++++.|+..++-+-+.
T Consensus 201 f~~al~~~gi~~~~~~~~~----~~~~~~~~~~~~ll~~~~~~~ai~-~~nD~~A~g~~~al~~~G~~vP~disvv 271 (349)
T 1jye_A 201 WHKYLTRNQIQPIAEREGD----WSAMSGFQQTMQMLNEGIVPTAML-VANDQMALGAMRAITESGLRVGADISVV 271 (349)
T ss_dssp HHHHHHHTTCCCSEEEECC----SSHHHHHHHHHHHHHTTCCCSEEE-ESSHHHHHHHHHHHHHTTCCBTTTBEEE
T ss_pred HHHHHHHcCCCccccccCC----CChHHHHHHHHHHHhCCCCCCEEE-ECChHHHHHHHHHHHHcCCCCCCcEEEE
Confidence 9999999998643221111 1133333344444433 467765 4566678889999999998754433333
No 149
>3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, adenine; HET: ADE; 2.05A {Brucella melitensis biovar abortus}
Probab=97.55 E-value=0.005 Score=66.49 Aligned_cols=201 Identities=13% Similarity=0.031 Sum_probs=123.4
Q ss_pred CCCceEEEeEEeecC---CCcchHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcc
Q 002371 22 LKPEVLNVGAIFSFG---TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGP 98 (930)
Q Consensus 22 ~~~~~I~IG~~~~l~---~~~G~~~~~a~~lAve~iN~~ggil~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp 98 (930)
+...+.+||+++|=. ..+-.....|++.+.++. |-++++.+.++..+.....+..++|+++++.+||+.
T Consensus 22 ~~~~~~kIglv~~g~i~D~~f~~~~~~G~~~~~~~~--------G~~~~~~~~e~~~~~~d~~~~l~~l~~~g~d~Ii~~ 93 (356)
T 3s99_A 22 MAEEKLKVGFIYIGPPGDFGWTYQHDQARKELVEAL--------GDKVETTFLENVAEGADAERSIKRIARAGNKLIFTT 93 (356)
T ss_dssp ----CEEEEEECSSCGGGSSHHHHHHHHHHHHHHHH--------TTTEEEEEECSCCTTHHHHHHHHHHHHTTCSEEEEC
T ss_pred ccCCCCEEEEEEccCCCchhHHHHHHHHHHHHHHHh--------CCceEEEEEecCCCHHHHHHHHHHHHHCCCCEEEEC
Confidence 566789999999631 234455677777777775 223677777776666666778888999999999986
Q ss_pred CChhhHHHHHHhhhcC-CCcEEEeecCCCCCCCCC-CCeEEEccCChHHHHHHHHHHHHH--cCCcEEEEEEec-CCcCc
Q 002371 99 QSAVMAHVLSHLANEL-QVPLLSFTALDPTLSPLQ-YPFFVQTAPNDLYLMSAIAEMVSY--FGWGEVIAIFND-DDQGR 173 (930)
Q Consensus 99 ~~S~~~~av~~~~~~~-~vp~is~~a~~~~ls~~~-~~~~fr~~p~~~~~~~ai~~~l~~--~~w~~vaii~~d-~~~g~ 173 (930)
. .....++..++.++ ++|++...... .... ..++|+. .++..++-.+.. -+-++|++|... .+...
T Consensus 94 g-~~~~~~~~~vA~~~Pdv~fv~id~~~---~~~Nv~sv~~~~-----~eg~ylaG~~A~~~tk~~kIGfVgg~~~p~v~ 164 (356)
T 3s99_A 94 S-FGYMDPTVKVAKKFPDVKFEHATGYK---TADNMSAYNARF-----YEGRYVQGVIAAKMSKKGIAGYIGSVPVPEVV 164 (356)
T ss_dssp S-GGGHHHHHHHHTTCTTSEEEEESCCC---CBTTEEEEEECH-----HHHHHHHHHHHHHHCSSCEEEEEECCCCHHHH
T ss_pred C-HHHHHHHHHHHHHCCCCEEEEEeccc---cCCcEEEEEech-----hHHHHHHHHHHHHhcCCCEEEEECCCccHHHH
Confidence 4 44566778888876 78888654321 1111 1233433 344444443211 235799999853 33333
Q ss_pred chHHHHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchhhHHHHHHHHHHcCC
Q 002371 174 NGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGM 243 (930)
Q Consensus 174 ~~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~~~~~~~~~a~~~g~ 243 (930)
.....|.+.++..+..+.....+... -.+...-.....++.+.++|+|+.+.... .++++|++.|.
T Consensus 165 ~~~~GF~~G~k~~np~i~v~~~~~g~-~~d~~kg~~~a~~l~~~G~DvIf~~~d~~---Gv~~aa~e~Gv 230 (356)
T 3s99_A 165 QGINSFMLGAQSVNPDFRVKVIWVNS-WFDPGKEADAAKALIDQGVDIITQHTDST---AAIQVAHDRGI 230 (356)
T ss_dssp HHHHHHHHHHHTTCTTCEEEEEECSS-SCCHHHHHHHHHHHHHTTCSEEEESSSSS---HHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHCCCCEEEEEECCC-CCChHHHHHHHHHHHhCCCcEEEECCCch---HHHHHHHHcCC
Confidence 45678888888876654433333321 01233344556666678999988876654 57899999774
No 150
>2hqb_A Transcriptional activator of COMK gene; berkeley structure genomics center target 1957B, structural genomics, PSI; 2.70A {Bacillus halodurans}
Probab=97.46 E-value=0.016 Score=61.09 Aligned_cols=195 Identities=11% Similarity=0.014 Sum_probs=113.7
Q ss_pred ceEEEeEEee--cCC-CcchHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccCCh
Q 002371 25 EVLNVGAIFS--FGT-VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSA 101 (930)
Q Consensus 25 ~~I~IG~~~~--l~~-~~G~~~~~a~~lAve~iN~~ggil~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~S 101 (930)
.+.+||+++| ++. .+-.....|++-+.++. |+++. +.++..++.........|+++++++||.....
T Consensus 4 ~~~~Ig~v~~~~~~d~~f~~~~~~gi~~~~~~~--------g~~~~--~~~~~~~~~~~~~~l~~l~~~~vdgIi~~~~~ 73 (296)
T 2hqb_A 4 GGGMVGLLVEDTIDDQGWNRKAYEGLLNIHSNL--------DVDVV--LEEGVNSEQKAHRRIKELVDGGVNLIFGHGHA 73 (296)
T ss_dssp --CEEEEECCCC----CCTHHHHHHHHHHHHHS--------CCEEE--EECCCCSHHHHHHHHHHHHHTTCCEEEECSTH
T ss_pred CCcEEEEEECCCCCCCcHHHHHHHHHHHHHHHh--------CCeEE--EEeCCCCHHHHHHHHHHHHHCCCCEEEEcCHh
Confidence 3578999997 333 55556677777777662 55544 45555555555566777888899999985433
Q ss_pred hhHHHHHHhhhcC-CCcEEEeecCCCCCCCCCCCeEEEccCChHHHHHHHH-HHHHH-cCCcEEEEEEecCCcCcchHHH
Q 002371 102 VMAHVLSHLANEL-QVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIA-EMVSY-FGWGEVIAIFNDDDQGRNGVTA 178 (930)
Q Consensus 102 ~~~~av~~~~~~~-~vp~is~~a~~~~ls~~~~~~~fr~~p~~~~~~~ai~-~~l~~-~~w~~vaii~~d~~~g~~~~~~ 178 (930)
...++..++.++ ++|++...... .. +.+-.... |..++..++ .++.+ .+-++|++|...... . ....
T Consensus 74 -~~~~~~~~~~~~p~~p~v~id~~~---~~---~~~~~v~~-d~~~g~~lag~la~~l~~~~~Ig~i~g~~~~-~-r~~G 143 (296)
T 2hqb_A 74 -FAEYFSTIHNQYPDVHFVSFNGEV---KG---ENITSLHF-EGYAMGYFGGMVAASMSETHKVGVIAAFPWQ-P-EVEG 143 (296)
T ss_dssp -HHHHHHTTTTSCTTSEEEEESCCC---CS---SSEEEEEE-CCHHHHHHHHHHHHHTCSSSEEEEEESCTTC-H-HHHH
T ss_pred -HHHHHHHHHHHCCCCEEEEEecCc---CC---CCEEEEEe-chHHHHHHHHHHHHhhccCCeEEEEcCcCch-h-hHHH
Confidence 233455566554 79998764321 11 22222222 333443333 33333 356999999854322 2 7888
Q ss_pred HHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchhhHHHHHHHHHHcC
Q 002371 179 LGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLG 242 (930)
Q Consensus 179 ~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~~~~~~~~~a~~~g 242 (930)
|.+.+++.|.. .....+... ..+...-.....++.+.++|+|+ +.....+..+++++++.|
T Consensus 144 f~~~~~~~~~~-~~~~~~~~~-~~~~~~g~~~a~~ll~~~~daI~-~~~D~~a~Gv~~a~~e~G 204 (296)
T 2hqb_A 144 FVDGAKYMNES-EAFVRYVGE-WTDADKALELFQELQKEQVDVFY-PAGDGYHVPVVEAIKDQG 204 (296)
T ss_dssp HHHHHHHTTCC-EEEEEECSS-SSCHHHHHHHHHHHHTTTCCEEE-CCCTTTHHHHHHHHHHHT
T ss_pred HHHHHHHhCCC-eEEEEeecc-ccCHHHHHHHHHHHHHCCCcEEE-ECCCCCCHHHHHHHHHcC
Confidence 99999998875 322222211 01123334455666666799866 455556778899999988
No 151
>3qsl_A Putative exported protein; unknown, structural genomics, PSI-biology, midwest center FO structural genomics, MCSG, unknown function; HET: MSE CIT; 2.00A {Bordetella bronchiseptica}
Probab=97.39 E-value=0.00085 Score=72.70 Aligned_cols=137 Identities=13% Similarity=0.158 Sum_probs=96.4
Q ss_pred HHHCCCcccEEEEeCCCCCCCCCHHHHHHHHHcCcccEEEecEEEe----cCccceeeecccccccceEEEEeccCCCcC
Q 002371 499 VRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGDIAIV----TNRTKAVDFTQPYIESGLVVVAPVRKLNSS 574 (930)
Q Consensus 499 ~~~ln~~~~~~~~~~~~~~~n~~~~~l~~~l~~g~~D~~~~~~~~t----~~R~~~vdfs~p~~~~~~~~~v~~~~~~~~ 574 (930)
.++.|+++++. ++ +++..++..|.+|++|+++++.... .++.....+..++...+..+++++..
T Consensus 59 ~~~~g~~v~~~--~~------~~~~~~~~~l~~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~---- 126 (346)
T 3qsl_A 59 FKDEGLDVSIA--DF------AGGSKALQAVVGGSADVVSGAFEHTLSLQAKGQFYRAFALQGRAPMIGVGVSKKN---- 126 (346)
T ss_dssp HHHTTCEEEEE--EC------SSHHHHHHHHHTTSCSEEEEETHHHHHHHHTTCCEEEEEESBSSCCEEEEEETTT----
T ss_pred hHhhCCeEEEE--ec------CChHHHHHHHHCCCCCEEccchHHHHHHHhCCCCeEEEEecccCCCcEEEEecCc----
Confidence 45678665544 42 5689999999999999988755433 45556666666666666777776543
Q ss_pred cceecccCchhHHHHHHHHHHHHHHhhhheeeccCCCCCCCCcccchhhHHHHHHHhhccccCCcccchhHHHHHHHHHH
Q 002371 575 AWAFLRPFTPLMWAVTGVFFLVVGTVVWILEHRLNDEFRGPPRKQIVTVLWFSFSTMFFAHRENTVSTLGRVVLIIWLFV 654 (930)
Q Consensus 575 ~~~~l~PF~~~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~ 654 (930)
T Consensus 127 -------------------------------------------------------------------------------- 126 (346)
T 3qsl_A 127 -------------------------------------------------------------------------------- 126 (346)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhhhhhhhhhheeeeeccccCCCCChHHhhhCCCeEEEE-eCchhHHHHH---HhcCCCc--cceEeCCCHHHHHHHH
Q 002371 655 VLIITSSYTASLTSILTVQQLSSPIKGIDTLMTSNDRVGYQ-VGSFAENYLI---EELSIPK--SRLVALGSPEEYAIAL 728 (930)
Q Consensus 655 ~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~s~~~i~~~-~~s~~~~~l~---~~~~~~~--~~~~~~~~~~~~~~~l 728 (930)
.++|++++||. |++|++. .|+....++. +..+... .+++.+++..+...+|
T Consensus 127 ---------------------~~~i~s~~DL~--Gk~i~~~~~gs~~~~~~~~~l~~~G~~~~~v~~~~~~~~~~~~~al 183 (346)
T 3qsl_A 127 ---------------------LPGYKGPADLK--GRKIGVTAPGSSTNMVVNFFLAKHGLKASDVSFIGVGAGAGAVTAL 183 (346)
T ss_dssp ---------------------CTTCCSGGGGT--TCEEEESSTTSHHHHHHHHHHHHTTCCGGGSEEEECCSSHHHHHHH
T ss_pred ---------------------ccCCCChHHcC--CCEEEECCCCcHHHHHHHHHHHHcCCCHHHeEEEecCCcHHHHHHH
Confidence 13799999996 8999998 5764433332 3444432 3556777778999999
Q ss_pred HcCCcEEEEccchhhHHHHhcC
Q 002371 729 ENRTVAAVVDERPYIDLFLSDH 750 (930)
Q Consensus 729 ~~g~~~a~~~~~~~~~~~~~~~ 750 (930)
.+|++|+++...++......+.
T Consensus 184 ~~G~vDa~~~~~p~~~~~~~~g 205 (346)
T 3qsl_A 184 RSGQIDAISNTDPVVSMLETSG 205 (346)
T ss_dssp HHTSCSEEEEETTHHHHHHHTT
T ss_pred HcCCccEEEecchhHHHHHhCC
Confidence 9999999998888876655443
No 152
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=97.36 E-value=0.00034 Score=74.29 Aligned_cols=203 Identities=10% Similarity=0.036 Sum_probs=129.5
Q ss_pred CCceEEEeEEeecC-CCcch-HHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccCC
Q 002371 23 KPEVLNVGAIFSFG-TVNGQ-VSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQS 100 (930)
Q Consensus 23 ~~~~I~IG~~~~l~-~~~G~-~~~~a~~lAve~iN~~ggil~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~ 100 (930)
....-+||+++|-. ..+-. ....|++-++++. |+++. +.++..++.........++.++|++||-...
T Consensus 10 ~~~s~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~ 79 (301)
T 3miz_A 10 SSRSNTFGIITDYVSTTPYSVDIVRGIQDWANAN--------GKTIL--IANTGGSSEREVEIWKMFQSHRIDGVLYVTM 79 (301)
T ss_dssp --CCCEEEEEESSTTTCCSCHHHHHHHHHHHHHT--------TCEEE--EEECTTCHHHHHHHHHHHHHTTCSEEEEEEE
T ss_pred hCCCCEEEEEeCCCcCcccHHHHHHHHHHHHHHC--------CCEEE--EEeCCCChHHHHHHHHHHHhCCCCEEEEecC
Confidence 34467899999974 23333 7788888877773 56554 4566677777777778888888888773222
Q ss_pred hhhHHHHHHhhhcCCCcEEEeecCCCCCCCCCCCeEEEccCChHHHHHHHHHHHHHcCCcEEEEEEecCC--cCcchHHH
Q 002371 101 AVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD--QGRNGVTA 178 (930)
Q Consensus 101 S~~~~av~~~~~~~~vp~is~~a~~~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~~~w~~vaii~~d~~--~g~~~~~~ 178 (930)
.... ....+...++|+|......+.. ...+ ....++...+..+++++...|.++++++..... ......+.
T Consensus 80 ~~~~--~~~~~~~~~iPvV~~~~~~~~~--~~~~---~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~G 152 (301)
T 3miz_A 80 YRRI--VDPESGDVSIPTVMINCRPQTR--ELLP---SIEPDDYQGARDLTRYLLERGHRRIGYIRLNPILLGAELRLDA 152 (301)
T ss_dssp EEEE--CCCCCTTCCCCEEEEEEECSST--TSSC---EEEECHHHHHHHHHHHHHTTTCCSEEEEECCTTSHHHHHHHHH
T ss_pred CccH--HHHHHHhCCCCEEEECCCCCCC--CCCC---EEeeChHHHHHHHHHHHHHcCCCeEEEEecCccchhHHHHHHH
Confidence 2111 3445667799999876543211 0223 345677777888899999999999999985433 34456788
Q ss_pred HHHHHHhcCcEEE----EEE---ecCCCCCCChhHHHHHHHHHhc--CCceEEEEEcchhhHHHHHHHHHHcCCCCCc
Q 002371 179 LGDKLAEIRCKIS----YKS---ALPPDQSVTETDVRNELVKVRM--MEARVIVVHGYSRTGLMVFDVAQRLGMMDSG 247 (930)
Q Consensus 179 ~~~~l~~~g~~i~----~~~---~~~~~~~~~~~d~~~~l~~l~~--~~~~viv~~~~~~~~~~~~~~a~~~g~~~~~ 247 (930)
|.+++++.|+.+. ... .+... .......+.++.+ .++++|+ +.+...+..+++++++.|+..++
T Consensus 153 f~~al~~~g~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~ai~-~~~d~~A~g~~~al~~~g~~vP~ 225 (301)
T 3miz_A 153 FRRTTSEFGLTENDLSISLGMDGPVGAE----NNYVFAAATEMLKQDDRPTAIM-SGNDEMAIQIYIAAMALGLRIPQ 225 (301)
T ss_dssp HHHHHHHHTCCGGGEEEEECEESSTTSC----EECHHHHHHHHHTSTTCCSEEE-ESSHHHHHHHHHHHHTTTCCHHH
T ss_pred HHHHHHHcCCCCCcceEEEcCCCCcCcc----ccHHHHHHHHHHcCCCCCcEEE-ECCHHHHHHHHHHHHHcCCCCCC
Confidence 9999999987532 221 11111 1111133444433 3567765 45666788899999999986443
No 153
>2f5x_A BUGD; periplasmic binding protein, transport protein; 1.72A {Bordetella pertussis tohama I}
Probab=97.26 E-value=0.003 Score=66.88 Aligned_cols=121 Identities=12% Similarity=0.150 Sum_probs=83.1
Q ss_pred CCCCChHHhhh------CCCeEEEE-eCchhH---HHHHHhcCCCccceEeCCCHHHHHHHHHcCCcEEEEccchhhHHH
Q 002371 677 SPIKGIDTLMT------SNDRVGYQ-VGSFAE---NYLIEELSIPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLF 746 (930)
Q Consensus 677 ~~i~sl~dL~~------s~~~i~~~-~~s~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~ 746 (930)
.+++|++||+. ....+|.. .|+..+ ..+.+..+.. ...++|....+.+.+|..|++|+.+.....+..+
T Consensus 121 s~~~sl~dL~~~ak~~p~~~~~g~~g~Gs~~hl~~~~l~~~~Gi~-~~~Vpy~G~~~a~~aL~~G~VD~~~~~~~~~~~~ 199 (312)
T 2f5x_A 121 FPPNNIKELAEYVKKNADKISLANAGIGAASHLCGTMLVEALGVN-LLTIPYKGTAPAMNDLLGKQVDLMCDQTTNTTQQ 199 (312)
T ss_dssp CSCCSHHHHHHHHHHHGGGCEEEESSTTSHHHHHHHHHHHHHTCC-CEEEECSSHHHHHHHHHTTSSCEEEEEHHHHHHH
T ss_pred CCCCCHHHHHHHHHhCCCceEEeCCCCCcHHHHHHHHHHHHHCCC-eEEeccCChHHHHHHHHcCCccEEEechHHHHHH
Confidence 58999999985 34567765 344322 2333445554 3357899999999999999999999887766555
Q ss_pred HhcCcceEEe---CC----------ccc---------cCccEEEecCCCc--chhHHHHHHHhccccccHHHHHHhh
Q 002371 747 LSDHCQFSVR---GQ----------EFT---------KSGWGFAFPRDSP--LAIDMSTAILTLSENGELQRIHDKW 799 (930)
Q Consensus 747 ~~~~~~l~~~---~~----------~~~---------~~~~~~~~~k~sp--l~~~~n~~i~~l~e~G~~~~~~~~~ 799 (930)
++. .+++.+ .+ .+. ...++++.||+-| +...+++++.++.+++.+++..+++
T Consensus 200 i~~-g~lr~Lav~~~~r~~~~pdvPt~~E~G~~~~~~~~w~gl~ap~g~p~~vv~~l~~al~~~~~~p~~~~~~~~~ 275 (312)
T 2f5x_A 200 ITS-GKVKAYAVTSLKRVPTLPDLPTMDESGYKGFEVGIWHGMWAPKGTPKPVVDKLVKSLQAGLADPKFQERMKQL 275 (312)
T ss_dssp HHT-TSSEEEEECSSSCCTTSTTSCBTTTTTCTTCCCEEEEEEEEETTCCHHHHHHHHHHHHHHHTCHHHHHHHHHT
T ss_pred HHc-CCeEEEEEcCccchhhcCCCCCHhhcCCCCeeEEEEEEEEEcCCCCHHHHHHHHHHHHHHHcCHHHHHHHHHC
Confidence 543 223222 11 011 1125788999976 9999999999999999887766655
No 154
>3ix1_A N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine protein; periplasmic N-formyl-4-amino-5-aminomethyl-2-methylpyrimidin protein; HET: NFM; 2.40A {Bacillus halodurans c-125}
Probab=97.24 E-value=0.00053 Score=72.88 Aligned_cols=78 Identities=8% Similarity=-0.050 Sum_probs=51.4
Q ss_pred ceEEEEeHHHHHHHHHHCCCcccEEEEeCCCCCCCCCHHHHHHHHHcCcccEEEec-EEEec---Cccceeeeccccccc
Q 002371 485 DIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGD-IAIVT---NRTKAVDFTQPYIES 560 (930)
Q Consensus 485 ~~~~G~~~dll~~l~~~ln~~~~~~~~~~~~~~~n~~~~~l~~~l~~g~~D~~~~~-~~~t~---~R~~~vdfs~p~~~~ 560 (930)
..+.|+.+.+-+-+.++.|+++++ .++ +....++..|..|++|+++++ ..... +......+..++...
T Consensus 15 ~~~~~~~va~~~g~~~~~Gl~v~~--~~~------~~~~~~~~~l~~G~~D~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 86 (302)
T 3ix1_A 15 AVHTFLYVAIENGYFAEEGLDVDI--VFP------TNPTDPIQLTASGAIPLALSYQPDVILARSKDLPVVSVASVVRSP 86 (302)
T ss_dssp GGGHHHHHHHHTTHHHHTTEEEEE--ECC------SSTTHHHHHHHHTSCSEEEECHHHHHHHHHTTCCEEEEEEEECSC
T ss_pred cccHHHHHHHHcChHHHcCCcEEE--ecC------CCCchHHHHHHCCCCCEEecCHHHHHHHHHCCCCEEEEEEEeccC
Confidence 345677777778888899966544 442 334589999999999999876 22222 333455566666666
Q ss_pred ceEEEEeccC
Q 002371 561 GLVVVAPVRK 570 (930)
Q Consensus 561 ~~~~~v~~~~ 570 (930)
+..+++++..
T Consensus 87 ~~~l~~~~~s 96 (302)
T 3ix1_A 87 LNHVMFLAEQ 96 (302)
T ss_dssp CEEEEEEGGG
T ss_pred CEEEEEECCC
Confidence 6777776543
No 155
>2qpq_A Protein BUG27; alpha/beta domain, venus flytrap, transport protein; HET: CIT; 1.92A {Bordetella pertussis}
Probab=97.13 E-value=0.0046 Score=65.17 Aligned_cols=121 Identities=12% Similarity=0.101 Sum_probs=83.2
Q ss_pred CCCCChHHhhh------CCCeEEEEe-CchhH---HHHHHhcCCCccceEeCCCHHHHHHHHHcCCcEEEEccchhhHHH
Q 002371 677 SPIKGIDTLMT------SNDRVGYQV-GSFAE---NYLIEELSIPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLF 746 (930)
Q Consensus 677 ~~i~sl~dL~~------s~~~i~~~~-~s~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~ 746 (930)
.+++|++||+. ....+|... |+..+ ..+.+..+.. ...++|....+.+.+|..|++|+.+.....+..+
T Consensus 112 s~~~sl~dL~~~ak~~p~~~~~g~~g~Gs~~hl~~~~l~~~~G~~-~~~Vpy~g~~~a~~al~~G~vD~~~~~~~~~~~~ 190 (301)
T 2qpq_A 112 SKYKTLGELMAAAKQTNTQVTYGSCGNGTPQHLAGELLNVSAKTH-MVHVPYKGCGPALNDVLGSQIGLAVVTASSAIPF 190 (301)
T ss_dssp CSCCSHHHHHHHTCSSSCCCEEEESSTTSHHHHHHHHHHHHHTCC-CEEEECSSHHHHHHHHHTTSSSCEEEEHHHHHHH
T ss_pred CCCCCHHHHHHHHHhCCCceEEecCCCCcHHHHHHHHHHHHhCCC-eEEeccCChHHHHHHHHCCCccEEEEcHHHHHHH
Confidence 58999999985 234566652 44322 2333445554 3356899999999999999999999887766555
Q ss_pred HhcCcceEEe---CC----------cc--------c-cCccEEEecCCCc--chhHHHHHHHhccccccHHHHHHhh
Q 002371 747 LSDHCQFSVR---GQ----------EF--------T-KSGWGFAFPRDSP--LAIDMSTAILTLSENGELQRIHDKW 799 (930)
Q Consensus 747 ~~~~~~l~~~---~~----------~~--------~-~~~~~~~~~k~sp--l~~~~n~~i~~l~e~G~~~~~~~~~ 799 (930)
++. .+++.+ .+ .+ . ...++++.|++-| +...+++++.++.+++.+++..+++
T Consensus 191 i~~-g~lr~Lav~~~~r~~~~pdvPt~~e~G~~~~~~~~w~gl~ap~g~p~~vv~~l~~al~~~~~~~~~~~~~~~~ 266 (301)
T 2qpq_A 191 IKA-GKLQALAVTSKERSALLPEVPTVAEQGVAGYELNQWHGLLVPGATPMAVRQKLYDGIAKVMQRDDVQKKLADL 266 (301)
T ss_dssp HHT-TSEEEEEECSSSCCTTCTTSCBSGGGTCTTCCCEEEEEEEEETTCCHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred Hhc-CCeEEEEEcCCccccccCCCCChHHhCCCceEEEeEEEEEecCCCCHHHHHHHHHHHHHHHcCHHHHHHHHHC
Confidence 443 333332 11 01 0 1135788999976 9999999999999999888777666
No 156
>2dvz_A BUGE, putative exported protein; periplamsic binding proteins, carboxylate binding, glutamate, transport protein; HET: GLU; 2.30A {Bordetella pertussis}
Probab=97.09 E-value=0.0043 Score=65.67 Aligned_cols=122 Identities=10% Similarity=0.117 Sum_probs=82.7
Q ss_pred CCCCChHHhhh------CCCeEEEE-eCchh---HHHHHHhcCCCccceEeCCCHHHHHHHHHcCCcEEEEccchhhHHH
Q 002371 677 SPIKGIDTLMT------SNDRVGYQ-VGSFA---ENYLIEELSIPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLF 746 (930)
Q Consensus 677 ~~i~sl~dL~~------s~~~i~~~-~~s~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~ 746 (930)
.+++|++||+. ....+|.. .|+.. ...+.+..+.. ...++|....+.+.+|..|++|+.+.....+..+
T Consensus 125 s~~~tl~dL~~~ak~~p~~~~~g~~g~Gs~~hl~~~~l~~~~Gi~-~~~Vpy~G~~~a~~al~~G~vD~~~~~~~~~~~~ 203 (314)
T 2dvz_A 125 FPAKDFKGFLEELKKNPGKYSYGSSGTCGVLHLMGESFKMATGTD-IVHVPYKGSGPAVADAVGGQIELIFDNLPSSMPQ 203 (314)
T ss_dssp SSCSSHHHHHHHHHTSTTTCEEEESCTTSHHHHHHHHHHHHHTCC-CEEEECSSHHHHHHHHHHTSSSEEEEEHHHHHHH
T ss_pred CCCCCHHHHHHHHHhCCCcEEEeCCCCCcHHHHHHHHHHHHhCCC-eEEcccCCHHHHHHHHHcCCceEEEEcHHHHHHH
Confidence 58999999975 23467765 25432 23343445554 3357899999999999999999999887766555
Q ss_pred Hhc-Ccc-eEEeCC----------cc--------c-cCccEEEecCCCc--chhHHHHHHHhccccccHHHHHHhh
Q 002371 747 LSD-HCQ-FSVRGQ----------EF--------T-KSGWGFAFPRDSP--LAIDMSTAILTLSENGELQRIHDKW 799 (930)
Q Consensus 747 ~~~-~~~-l~~~~~----------~~--------~-~~~~~~~~~k~sp--l~~~~n~~i~~l~e~G~~~~~~~~~ 799 (930)
++. .-+ +.+.++ .+ . ...++++.|++-| ....+++++.++.+++.+++..+++
T Consensus 204 i~~g~lr~Lav~~~~r~~~~pdvPt~~e~G~~~~~~~~w~gl~ap~g~p~~vv~~l~~al~~~~~~p~~~~~~~~~ 279 (314)
T 2dvz_A 204 IQAGKLRAMAIAWPTRIDAIKDVPTFADAGFPVLNQPVWYGLLAPKGTPMDVVNKLRDAAVVALKDPKVIKALDDQ 279 (314)
T ss_dssp HHTTSSEEEEEESSSCCGGGTTSCBTTTTTCGGGCCCEEEEEEEETTCCHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHcCCEEEEEecCccccccCCCCCCHHhcCCCceEEeEEEEEEEcCCCCHHHHHHHHHHHHHHHcCHHHHHHHHHC
Confidence 443 212 222211 01 0 1125788999976 9999999999999999888776665
No 157
>3qi7_A Putative transcriptional regulator; periplasmic binding protein-like, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.86A {Clostridium difficile}
Probab=97.07 E-value=0.016 Score=61.67 Aligned_cols=217 Identities=12% Similarity=0.044 Sum_probs=129.9
Q ss_pred CceEEEeEEeecCCCcchHHHHHHHHHHHHHhcCCCCC--C-C--cEEEEEEecCCCCh-----HHHHHHHHHHHhc-Cc
Q 002371 24 PEVLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVL--G-G--RKLSITMHDAKFNG-----FLSIMGALQFMET-DT 92 (930)
Q Consensus 24 ~~~I~IG~~~~l~~~~G~~~~~a~~lAve~iN~~ggil--~-g--~~l~l~~~D~~~~~-----~~a~~~a~~li~~-~v 92 (930)
.++.+||++.+--+ ......++++-.+++.|..+..- . | ..+.+++.++-.|+ ..+++...++... ++
T Consensus 10 ~~~~~igi~t~t~s-~se~t~~~a~~~i~~yg~~pn~~~l~~~~s~~iG~I~~~~~pd~F~se~~ttI~~I~~~a~~~gy 88 (371)
T 3qi7_A 10 IDDFKVAVVTQPLS-ENKVQYNMVEEMAKEYEEENKIDKDKDGQTKVKQTIKHVVLPENFTSNIDSAINKIVKLADDKEV 88 (371)
T ss_dssp CCCEEEEEEECCTT-TCHHHHHHHHHHHHHHHHHTTCCC-----CCCCEEEEEEECCTTGGGGHHHHHHHHHGGGGCTTE
T ss_pred CCCeEEEEEcCCcC-CCHHHHHHHHHHHHHhCCCcccchhcccccccceEEEEeccCCCchHHHHHHHHHHHHHhhcCCC
Confidence 35799999876433 34778899999999999744211 0 1 22334444433333 3456666666666 78
Q ss_pred EEEEccCChhhHHHHHHhhhcCCCcEEEeecCCCCCCC--CCCCeEEEccCChHHHHHHHHHHHHHcCCcEEEEEEecCC
Q 002371 93 LAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSP--LQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD 170 (930)
Q Consensus 93 ~aiiGp~~S~~~~av~~~~~~~~vp~is~~a~~~~ls~--~~~~~~fr~~p~~~~~~~ai~~~l~~~~w~~vaii~~d~~ 170 (930)
.+||.-..........+...+.+++.|-+.+....-.. ..... ..+..++..-+..+++++...|.|+++.|.....
T Consensus 89 k~II~n~~~~~~~~~i~~lkekrvDgIIi~~~~~ed~~~i~~~~d-i~V~~Dn~~Ggy~A~~~Li~~Ghk~Ia~Isgp~~ 167 (371)
T 3qi7_A 89 QAIVVSTDQAGLLPALQKVKEKRPEIITISAPMGDDKNQLSQFVD-VNLGVSAEERGKVLAERSKEMGAKAFIHYASTDD 167 (371)
T ss_dssp EEEEEECSSCCCHHHHHHHHHHCTTSEEEESSCCSCHHHHHHHSS-EEEECCHHHHHHHHHHHHHHTTCSCEEEEEETTG
T ss_pred eEEEEECCCcchHHHHHHHHhcCCCEEEEeccccccchhhcccCc-eEEEeChHHHHHHHHHHHHHCCCCEEEEEecccc
Confidence 88886544332344456666667776554443211000 00111 2455555666667778999999999999986443
Q ss_pred c----CcchHHHHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHH---------hcCCceEEEEEcchhhHHHHHHH
Q 002371 171 Q----GRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKV---------RMMEARVIVVHGYSRTGLMVFDV 237 (930)
Q Consensus 171 ~----g~~~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l---------~~~~~~viv~~~~~~~~~~~~~~ 237 (930)
. .....+.+++++++.|+.+.....-.+. ....+ ...+++ +..+..--|++++...+..++++
T Consensus 168 ~~~~~~~~R~~Gyk~Al~e~Gi~~~~~~~~d~t---~e~G~-~~a~~lL~~~~~~~~~~~~~~TAIFatND~mAiG~ika 243 (371)
T 3qi7_A 168 LKDVNIAKRLEMIKETCKNIGLPFVQVNTPNIN---TEEDK-NKVKQFLNEDIEKQVKKYGKDINVFGVNEYMDEVILTK 243 (371)
T ss_dssp GGSHHHHHHHHHHHHHHHHTTCCEEEEEECCCS---STHHH-HHHHHHHHHHHHHHHHHHCSCCEEEESSHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHcCCCceeecCCCCc---hHHHH-HHHHHHHhccccchhhccCCCcEEEECCHHHHHHHHHH
Confidence 2 2235778999999999987655322222 12222 222222 22233235667788889999999
Q ss_pred HHHcCCCCC
Q 002371 238 AQRLGMMDS 246 (930)
Q Consensus 238 a~~~g~~~~ 246 (930)
+++.|...+
T Consensus 244 l~e~Gi~VP 252 (371)
T 3qi7_A 244 ALELKYIVA 252 (371)
T ss_dssp HHHHCCBBC
T ss_pred HHHcCCccC
Confidence 999997543
No 158
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=96.95 E-value=0.007 Score=66.07 Aligned_cols=205 Identities=9% Similarity=0.018 Sum_probs=118.4
Q ss_pred CceEEEeEEeecCCC--cchHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccCCh
Q 002371 24 PEVLNVGAIFSFGTV--NGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSA 101 (930)
Q Consensus 24 ~~~I~IG~~~~l~~~--~G~~~~~a~~lAve~iN~~ggil~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~S 101 (930)
...-.||+++|-... ........+.-++++.= . |+.+.+...+...+. .-......+..++|++||=....
T Consensus 66 ~~s~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a-~-----g~~~~~~~~~~~~~~-~~~~~~~~l~~~~vdGiIi~~~~ 138 (366)
T 3h5t_A 66 RRAGAIGVLLTEDLTYAFEDMASVDFLAGVAQAA-G-----DTQLTLIPASPASSV-DHVSAQQLVNNAAVDGVVIYSVA 138 (366)
T ss_dssp --CCEEEEEESSCTTHHHHSHHHHHHHHHHHHHS-S-----SCEEEEEECCCCTTC-CHHHHHHHHHTCCCSCEEEESCC
T ss_pred CCCCEEEEEecCCccccccCHHHHHHHHHHHHHH-h-----hCCEEEEEcCCCccH-HHHHHHHHHHhCCCCEEEEecCC
Confidence 345789999986422 12223333333344321 1 567777666543321 12334555666677776632112
Q ss_pred hhHHHHHHhhhcCCCcEEEeecCCCCCCCCCCCeEEEccCChHHHHHHHHHHHHHcCCcEEEEEEec-------------
Q 002371 102 VMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFND------------- 168 (930)
Q Consensus 102 ~~~~av~~~~~~~~vp~is~~a~~~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~~~w~~vaii~~d------------- 168 (930)
... .....+...++|+|...... .....++ ...++...+..++++|...|.+++++|...
T Consensus 139 ~~~-~~~~~l~~~~iPvV~i~~~~---~~~~~~~---V~~D~~~~~~~a~~~L~~~G~r~I~~i~~~~~~~~~~g~~~~~ 211 (366)
T 3h5t_A 139 KGD-PHIDAIRARGLPAVIADQPA---REEGMPF---IAPNNRKAIAPAAQALIDAGHRKIGILSIRLDRANNDGEVTRE 211 (366)
T ss_dssp TTC-HHHHHHHHHTCCEEEESSCC---SCTTCCE---EEECHHHHTHHHHHHHHHTTCCSEEEEEECCSSSCCCEECCHH
T ss_pred CCh-HHHHHHHHCCCCEEEECCcc---CCCCCCE---EEeChHHHHHHHHHHHHHCCCCcEEEEecccccccccCccccc
Confidence 111 23345566799999875422 1223343 456677778888899999999999999832
Q ss_pred ------CCcCcchHHHHHHHHHhcCcEEE---EEEecCCCCCCChhHHHHHHHHHhc--CCceEEEEEcchhhHHHHHHH
Q 002371 169 ------DDQGRNGVTALGDKLAEIRCKIS---YKSALPPDQSVTETDVRNELVKVRM--MEARVIVVHGYSRTGLMVFDV 237 (930)
Q Consensus 169 ------~~~g~~~~~~~~~~l~~~g~~i~---~~~~~~~~~~~~~~d~~~~l~~l~~--~~~~viv~~~~~~~~~~~~~~ 237 (930)
........+.|.+++++.|+.+. ....-.. +..+-...+.++.+ ..+++||. .+...+..++++
T Consensus 212 ~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~----~~~~~~~~~~~ll~~~~~~~ai~~-~nD~~A~g~~~a 286 (366)
T 3h5t_A 212 RLENAQYQVQRDRVRGAMEVFIEAGIDPGTVPIMECWIN----NRQHNFEVAKELLETHPDLTAVLC-TVDALAFGVLEY 286 (366)
T ss_dssp HHHTCCCTTHHHHHHHHHHHHHHHTCCGGGSCEEEESSC----CHHHHHHHHHHHHHHCTTCCEEEE-SSHHHHHHHHHH
T ss_pred cccccccchHHHHHHHHHHHHHHCCCCCCcceEEEcCCC----CHHHHHHHHHHHHcCCCCCcEEEE-CCcHHHHHHHHH
Confidence 22334567899999999987631 1111111 13333344455433 35777654 556778889999
Q ss_pred HHHcCCCCCc
Q 002371 238 AQRLGMMDSG 247 (930)
Q Consensus 238 a~~~g~~~~~ 247 (930)
+++.|+..++
T Consensus 287 l~~~G~~vP~ 296 (366)
T 3h5t_A 287 LKSVGKSAPA 296 (366)
T ss_dssp HHHTTCCTTT
T ss_pred HHHcCCCCCC
Confidence 9999987544
No 159
>4ddd_A Immunogenic protein; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, immune system; 1.90A {Ehrlichia chaffeensis}
Probab=96.63 E-value=0.0034 Score=67.32 Aligned_cols=62 Identities=27% Similarity=0.230 Sum_probs=44.4
Q ss_pred CCCCChHHhhhCCCeEEEE-eCchhHH---HHHHhcCCCccc--eEeCCCHHHHHHHHHcCCcEEEEccc
Q 002371 677 SPIKGIDTLMTSNDRVGYQ-VGSFAEN---YLIEELSIPKSR--LVALGSPEEYAIALENRTVAAVVDER 740 (930)
Q Consensus 677 ~~i~sl~dL~~s~~~i~~~-~~s~~~~---~l~~~~~~~~~~--~~~~~~~~~~~~~l~~g~~~a~~~~~ 740 (930)
.+|++++||. +++|++. .|+..+. .+.+..+..... .+.+.+..+.+.+|..|++|+++...
T Consensus 136 s~i~sl~DL~--gk~v~~~~~Gs~~~~~~~~~l~~~Gi~~~~v~~v~~~g~~~a~~aL~~G~vDa~~~~~ 203 (327)
T 4ddd_A 136 SNISVIDDIK--GKRVNIGSPGTGVRVAMLKLLGEKGWTKKDFSVMAELKSSEQAQALCDNKIDVMVDVI 203 (327)
T ss_dssp SSCCSGGGGT--TSEEECCSTTSHHHHHHHHHHHHHTCCGGGCSEEECCCHHHHHHHHHTTSCSBEEEEE
T ss_pred CCCCCHHHhC--CCEEecCCCCccHHHHHHHHHHHcCCChHhcchhhcCCHHHHHHHHHcCCCCEEEEcc
Confidence 3789999996 7788884 4553322 222445555433 46788999999999999999998743
No 160
>3ixl_A Amdase, arylmalonate decarboxylase; enantioselective decarboxylation, lyase; HET: CME PAC; 1.45A {Bordetella bronchiseptica} PDB: 3ixm_A 2vlb_A 3dg9_A 3ip8_A* 3dtv_A* 3eis_A*
Probab=96.61 E-value=0.03 Score=56.59 Aligned_cols=129 Identities=11% Similarity=-0.002 Sum_probs=91.5
Q ss_pred HHHHHHHHhcCcEEEEccCChhhH--------HHHHHhhhcCCCcEEEeecCCCCCCCCCCCeEEEccCChHHHHHHHHH
Q 002371 81 IMGALQFMETDTLAIVGPQSAVMA--------HVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAE 152 (930)
Q Consensus 81 ~~~a~~li~~~v~aiiGp~~S~~~--------~av~~~~~~~~vp~is~~a~~~~ls~~~~~~~fr~~p~~~~~~~ai~~ 152 (930)
..++.+|...++++|+=+-+|+.. .....+.+..++|+++. +.++++
T Consensus 56 ~~aa~~L~~ag~d~i~~aCtsas~~~G~~~~~~~~~~l~~~~~iPv~~~-------------------------~~A~~~ 110 (240)
T 3ixl_A 56 VDHARRLQKQGAAVVSLMCTSLSFYRGAAFNAALTVAMREATGLPCTTM-------------------------STAVLN 110 (240)
T ss_dssp HHHHHHHHHTTEEEEEECCHHHHHTTCHHHHHHHHHHHHHHHSSCEEEH-------------------------HHHHHH
T ss_pred HHHHHHhccCCCCEEEECCcHHHHhcccchHHHHHHHHHhccCCCEECH-------------------------HHHHHH
Confidence 344556666699999986666444 34456666778999862 467888
Q ss_pred HHHHcCCcEEEEEEecCCcCcchHHHHHHHHHhcCcEEEEEEecCCCC-----CCChhHHHHHHHH-H-hcCCceEEEEE
Q 002371 153 MVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQ-----SVTETDVRNELVK-V-RMMEARVIVVH 225 (930)
Q Consensus 153 ~l~~~~w~~vaii~~d~~~g~~~~~~~~~~l~~~g~~i~~~~~~~~~~-----~~~~~d~~~~l~~-l-~~~~~~viv~~ 225 (930)
.++..|.++|+++.. |.....+.+++.+++.|++++......... ..+...+...+.+ + ...++|+||+.
T Consensus 111 al~~~g~~rvglltp---y~~~~~~~~~~~l~~~Giev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~adaivL~ 187 (240)
T 3ixl_A 111 GLRALGVRRVALATA---YIDDVNERLAAFLAEESLVPTGCRSLGITGVEAMARVDTATLVDLCVRAFEAAPDSDGILLS 187 (240)
T ss_dssp HHHHTTCSEEEEEES---SCHHHHHHHHHHHHHTTCEEEEEEECCCCCHHHHHTCCHHHHHHHHHHHHHTSTTCSEEEEE
T ss_pred HHHHhCCCEEEEEeC---ChHHHHHHHHHHHHHCCCEEeccccCCCCCcchhhcCCHHHHHHHHHHHhhcCCCCCEEEEe
Confidence 888999999999974 777888999999999999987655443221 1235567777788 7 67789999998
Q ss_pred cchhhHHHHHHH
Q 002371 226 GYSRTGLMVFDV 237 (930)
Q Consensus 226 ~~~~~~~~~~~~ 237 (930)
|..-....++.+
T Consensus 188 CT~l~~l~~i~~ 199 (240)
T 3ixl_A 188 SGGLLTLDAIPE 199 (240)
T ss_dssp CTTSCCTTHHHH
T ss_pred CCCCchhhhHHH
Confidence 766443334443
No 161
>2x7q_A Ca3427, possible thiamine biosynthesis enzyme; unknown function; 2.00A {Candida albicans} PDB: 2x7p_A
Probab=96.49 E-value=0.0097 Score=63.59 Aligned_cols=91 Identities=19% Similarity=0.227 Sum_probs=55.0
Q ss_pred CCCCChHHhhhCCCeEEEEe-CchhHH---HHHHhcCCCc-cceEeCCCHHHHHHHHHcC----CcEEEEccchhhHHHH
Q 002371 677 SPIKGIDTLMTSNDRVGYQV-GSFAEN---YLIEELSIPK-SRLVALGSPEEYAIALENR----TVAAVVDERPYIDLFL 747 (930)
Q Consensus 677 ~~i~sl~dL~~s~~~i~~~~-~s~~~~---~l~~~~~~~~-~~~~~~~~~~~~~~~l~~g----~~~a~~~~~~~~~~~~ 747 (930)
++|++++|| ++||+.. |+.... .+.+..++.. .+++.+++..+...+|.+| ++||++.+........
T Consensus 110 ~~i~s~~DL----K~i~~~~~gs~~~~~~~~l~~~~Gl~~dv~~v~~~~~~~~~~al~~G~~~~~vDa~~~ep~~~~~~~ 185 (321)
T 2x7q_A 110 DDVTDAKQL----KRIGVSRIGSGSYVMSFVLAHQLGVPSFDQFQVLSNFKNLRDSVNLKDGVEGSDAFMWEYFTSKKYY 185 (321)
T ss_dssp TTCSSGGGC----CEEEESSTTSHHHHHHHHHHHHHTSCCCCEEEECCSHHHHHHHHTTCTTSCCCSEEEEEHHHHHHHH
T ss_pred CCCCChHHc----ceEEeeCCCcHHHHHHHHHHHhcCCCcceEEEEcCChHHHHHHHHcCCCccceEEEEecCccchhhc
Confidence 479999999 5899986 654332 2223344442 4667777888999999999 9999865433333222
Q ss_pred hcCcceEEeCCccccCc-cEEEecCC
Q 002371 748 SDHCQFSVRGQEFTKSG-WGFAFPRD 772 (930)
Q Consensus 748 ~~~~~l~~~~~~~~~~~-~~~~~~k~ 772 (930)
+...+..+.+.....+ .+++++++
T Consensus 186 -~~g~~~~~~d~~~~~~~~~l~~~~~ 210 (321)
T 2x7q_A 186 -DNHEIKQIDQIYTPWSSWVVATSSD 210 (321)
T ss_dssp -HTTSEEEEEEEECSSCSEEEEEEHH
T ss_pred -cCCceEEccccCCCCceEEEEEcHH
Confidence 2334555443332222 35666654
No 162
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=96.45 E-value=0.0024 Score=55.19 Aligned_cols=79 Identities=15% Similarity=0.087 Sum_probs=62.8
Q ss_pred HHHHHHHhhhheeeccCCCCCCCCcccchhhHHHHHHHhhccc--cCCcccchhHHHHHHHHHHHHHhhhhhhhhhheee
Q 002371 593 FFLVVGTVVWILEHRLNDEFRGPPRKQIVTVLWFSFSTMFFAH--RENTVSTLGRVVLIIWLFVVLIITSSYTASLTSIL 670 (930)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~L 670 (930)
.+++.+++++.+|+..+ +.+..++.+++|+++.++...| .-.|.+..+|++.++|.++++.+.+...+.+.+.+
T Consensus 18 ~~~~~a~~~~~~E~~~~----~~~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~l~G~~~~~~~~~~i~~~~ 93 (103)
T 2k1e_A 18 VLEEASKKAVEAERGAP----GAALISYPDAIWWSVETATTVGYGDRYPVTEEGRKVAEQVMKAGIEVFALVTAALATDF 93 (103)
T ss_dssp HHHHHHHHHHHHHTTST----TCCCCCGGGTTTTTTGGGGCCSCCSSCCCSSSCTHHHHHHHHHHHHHHHHTHHHHHTTG
T ss_pred HHHHHHHhhhhhccCCC----CcccccHHHHHHHHHHHHhcccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33345666777776542 3344578999999999999776 33799999999999999999999999999999998
Q ss_pred eeccc
Q 002371 671 TVQQL 675 (930)
Q Consensus 671 t~~~~ 675 (930)
+....
T Consensus 94 ~~~~~ 98 (103)
T 2k1e_A 94 VRREE 98 (103)
T ss_dssp GGHHH
T ss_pred HHHHH
Confidence 87543
No 163
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=95.96 E-value=0.0081 Score=53.60 Aligned_cols=76 Identities=17% Similarity=0.198 Sum_probs=60.7
Q ss_pred HHHHHhhhheeeccCCCCCCCCcccchhhHHHHHHHhhccc--cCCcccchhHHHHHHHHHHHHHhhhhhhhhhheeeee
Q 002371 595 LVVGTVVWILEHRLNDEFRGPPRKQIVTVLWFSFSTMFFAH--RENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTV 672 (930)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~ 672 (930)
++.+.+.|.+|+.. .++...++.+++|+++.++...| .-.|.+..+|++.++|.++++.+.+...+.+++.++.
T Consensus 41 ~~~a~~~~~~E~~~----~~~~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~Gi~~~~~~~~~i~~~~~~ 116 (122)
T 2ih3_C 41 LAGSYLAVLAERGA----PGAQLITYPRALWWACETATTVAYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVG 116 (122)
T ss_dssp HHHHHHHHHHHTTS----TTCCCCSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhheeeecC----CCCccCccccchhheeeeeeeeecCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667777643 23344579999999999998776 3379999999999999999999999999999998876
Q ss_pred cc
Q 002371 673 QQ 674 (930)
Q Consensus 673 ~~ 674 (930)
..
T Consensus 117 ~~ 118 (122)
T 2ih3_C 117 RE 118 (122)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 164
>2g29_A Nitrate transport protein NRTA; solute-binding protein, alpha-beta protein; 1.50A {Synechocystis SP}
Probab=95.82 E-value=0.033 Score=61.78 Aligned_cols=103 Identities=11% Similarity=0.170 Sum_probs=61.3
Q ss_pred HHhhhCCCeEEEE-eCchhHHHHH---HhcCCCc---cceEeCCCHHHHHHHHHcCCcEEEEccchhhHHHHhcCc-ceE
Q 002371 683 DTLMTSNDRVGYQ-VGSFAENYLI---EELSIPK---SRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSDHC-QFS 754 (930)
Q Consensus 683 ~dL~~s~~~i~~~-~~s~~~~~l~---~~~~~~~---~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~~-~l~ 754 (930)
+||. |++|++. .++....++. +..++.. .+++.+ ...+...+|.+|++|+++...++......+.. ...
T Consensus 151 ~dLk--Gk~iav~~~gs~~~~~l~~~L~~~Gl~~~~dv~~v~~-~~~~~~~aL~~G~vDa~~~~eP~~~~~~~~g~~~~~ 227 (417)
T 2g29_A 151 AKVT--DPKVAMTFPGGTHDMWIRYWLAAGGMEPGKDFSTIVV-PPAQMVANVKVNAMESFCVGEPWPLQTVNQGVGYQA 227 (417)
T ss_dssp HTSS--SCEEEESSTTSHHHHHHHHHHHHTTCCBTTTBEEEEC-CGGGHHHHHHTTSCSEEEEETTHHHHHHHHTSCEEE
T ss_pred HhcC--CCEEEEeCCCCHHHHHHHHHHHHcCCCCCCceEEEEC-CHHHHHHHHHcCCCCEEEeCCCHHHHHHHcCCCEEE
Confidence 6775 8999997 4664433332 2345443 355666 45789999999999999988887766655533 222
Q ss_pred -EeCCccccCc-cEEEecCC----Cc-----chhHHHHHHHhccc
Q 002371 755 -VRGQEFTKSG-WGFAFPRD----SP-----LAIDMSTAILTLSE 788 (930)
Q Consensus 755 -~~~~~~~~~~-~~~~~~k~----sp-----l~~~~n~~i~~l~e 788 (930)
...+.....+ ..++++++ .| +...+.++...+.+
T Consensus 228 ~~~~~~~~~~p~~~l~~~~~~~~~~p~~~~~~~~A~~~A~~~~~~ 272 (417)
T 2g29_A 228 LTTGQLWKDHPEKAFGMRADWVDQNPKAAKALLMAVMEAQQWCDQ 272 (417)
T ss_dssp EEGGGTBTTCBCEEEEEEHHHHHHCHHHHHHHHHHHHHHHHHHHC
T ss_pred EechhhcCCCceEEEEECHHHHHHCHHHHHHHHHHHHHHHHHHhC
Confidence 2223222222 46677755 45 33445555555654
No 165
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=95.48 E-value=0.021 Score=53.07 Aligned_cols=77 Identities=16% Similarity=0.163 Sum_probs=61.3
Q ss_pred HHHHHhhhheeeccCCCCCCCCcccchhhHHHHHHHhhccc--cCCcccchhHHHHHHHHHHHHHhhhhhhhhhheeeee
Q 002371 595 LVVGTVVWILEHRLNDEFRGPPRKQIVTVLWFSFSTMFFAH--RENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTV 672 (930)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~ 672 (930)
++.+++++.+|+..+ ++...++.+++|+++.++...| .-.|.+..+|++.++|.++++.+.+..++.+++.++.
T Consensus 64 ~~~a~~~~~~E~~~~----~~~~~s~~~a~y~s~vTltTVGYGDi~P~t~~gr~~~~~~~l~Gv~~~a~~~~~i~~~~~~ 139 (155)
T 2a9h_A 64 LAGSYLAVLAERGAP----GAALISYPDALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSYGLVFAAVATWFVG 139 (155)
T ss_dssp HHHHHHHHHHHTTSS----CSSTTSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhccCC----CCccCcccceeheeeeeeecccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555677775432 3334568999999999998776 3379999999999999999999999999999999987
Q ss_pred ccc
Q 002371 673 QQL 675 (930)
Q Consensus 673 ~~~ 675 (930)
...
T Consensus 140 ~~~ 142 (155)
T 2a9h_A 140 REQ 142 (155)
T ss_dssp CCC
T ss_pred HHH
Confidence 653
No 166
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=95.44 E-value=0.026 Score=51.64 Aligned_cols=75 Identities=17% Similarity=0.189 Sum_probs=58.8
Q ss_pred HHHHhhhheeeccCCCCCCCCcccchhhHHHHHHHhhccc--cCCcccchhHHHHHHHHHHHHHhhhhhhhhhheeeeec
Q 002371 596 VVGTVVWILEHRLNDEFRGPPRKQIVTVLWFSFSTMFFAH--RENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQ 673 (930)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~ 673 (930)
+.+++++.+++.. .++....+.+++||++.++..-| .-.|.+..+|++.++|.++++.+.+...+.+.+.+...
T Consensus 21 ~~a~~~~~~e~~~----~~~~~~~~~~a~yf~~~T~tTvGyGd~~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~~~~~ 96 (139)
T 3eff_K 21 AGSYLAVLAERGA----PGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGR 96 (139)
T ss_dssp HHHHHHHHTTSSC----TTCCCCCHHHHHHHHHHHHTTCCCSSSCCCSSHHHHHHHHHHHHHHHHHHHHHHHHTTTTTHH
T ss_pred HHHHHHHHHhcCC----CCcccCCHHHHHHHHheeeecccCCCCcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666543 23344568999999999998776 34799999999999999999999999999999988554
Q ss_pred c
Q 002371 674 Q 674 (930)
Q Consensus 674 ~ 674 (930)
.
T Consensus 97 ~ 97 (139)
T 3eff_K 97 E 97 (139)
T ss_dssp H
T ss_pred H
Confidence 3
No 167
>3jv9_A OXYR, transcriptional regulator, LYSR family; LYSR-type transcriptional regulator, LTTR, redox, structural genomics, OPPF; 2.39A {Neisseria meningitidis}
Probab=95.24 E-value=0.21 Score=48.88 Aligned_cols=192 Identities=13% Similarity=0.117 Sum_probs=115.9
Q ss_pred cceEEEecCcccccccEEeecCcceEEEEeHHHHHHHHHHCCCcccEEEEeCCCCCCCCCHHHHHHHHHcCcccEEEecE
Q 002371 462 RQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGDI 541 (930)
Q Consensus 462 ~~lrv~v~~~~~~~p~~~~~~~~~~~~G~~~dll~~l~~~ln~~~~~~~~~~~~~~~n~~~~~l~~~l~~g~~D~~~~~~ 541 (930)
.+||||+.. .+. ..+-.+++..+.++.+ .++++... ++..++..+|.+|++|+++...
T Consensus 4 g~l~Ig~~~--~~~------------~~~l~~~l~~~~~~~P-~i~i~i~~-------~~~~~~~~~l~~g~~Dl~i~~~ 61 (219)
T 3jv9_A 4 GAFKLGLIF--TVA------------PYLLPKLIVSLRRTAP-KMPLMLEE-------NYTHTLTESLKRGDVDAIIVAE 61 (219)
T ss_dssp CCEEEEEET--TTH------------HHHHHHHHHHHHHHST-TCCEEEEE-------ECHHHHHHHHHHTSSSEEEEES
T ss_pred CcEEEEEcc--hhh------------HHHHHHHHHHHHHHCC-CcEEEEEe-------CCcHHHHHHHHcCCCCEEEEcC
Confidence 568888875 111 1244677888888764 35565554 5578999999999999998743
Q ss_pred EEecCccceeeecccccccceEEEEeccCCCcCcceecccCchhHHHHHHHHHHHHHHhhhheeeccCCCCCCCCcccch
Q 002371 542 AIVTNRTKAVDFTQPYIESGLVVVAPVRKLNSSAWAFLRPFTPLMWAVTGVFFLVVGTVVWILEHRLNDEFRGPPRKQIV 621 (930)
Q Consensus 542 ~~t~~R~~~vdfs~p~~~~~~~~~v~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (930)
.. ....+. ..++....+++++++..+..
T Consensus 62 ~~---~~~~~~-~~~l~~~~~~~v~~~~~pl~------------------------------------------------ 89 (219)
T 3jv9_A 62 PF---QEPGIV-TEPLYDEPFFVIVPKGHSFE------------------------------------------------ 89 (219)
T ss_dssp SC---CCTTEE-EEEEEEEEEEEEEETTCGGG------------------------------------------------
T ss_pred CC---CCCCee-EEEeeeceEEEEEeCCCCcc------------------------------------------------
Confidence 22 122232 46677888888888765211
Q ss_pred hhHHHHHHHhhccccCCcccchhHHHHHHHHHHHHHhhhhhhhhhheeeeeccccCCCCChHHhhhCCCeE-EEEeCchh
Q 002371 622 TVLWFSFSTMFFAHRENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIDTLMTSNDRV-GYQVGSFA 700 (930)
Q Consensus 622 ~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~s~~~i-~~~~~s~~ 700 (930)
....-+++||. +.++ ....++..
T Consensus 90 ------------------------------------------------------~~~~~~~~~L~--~~~~i~~~~~~~~ 113 (219)
T 3jv9_A 90 ------------------------------------------------------ELDAVSPRMLG--EEQVLLLTEGNCM 113 (219)
T ss_dssp ------------------------------------------------------TSSSCCSSTTS--SSCEEEECTTCHH
T ss_pred ------------------------------------------------------cCCCCCHHHhc--CCcEEEecCCccH
Confidence 02334677885 4443 44445544
Q ss_pred HHHHHHhcCC--------CccceEeCCCHHHHHHHHHcCCcEEEEccchhhHHHHhcCcceEEeCC--ccccCccEEEec
Q 002371 701 ENYLIEELSI--------PKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSDHCQFSVRGQ--EFTKSGWGFAFP 770 (930)
Q Consensus 701 ~~~l~~~~~~--------~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~ 770 (930)
...+.+.... ........++.+...+.+..|..-+++-+..... + +..++..+.. ......++++.+
T Consensus 114 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~g~gi~~~p~~~~~~-~--~~~~l~~~~~~~~~~~~~~~l~~~ 190 (219)
T 3jv9_A 114 RDQVLSSCSELAAKQRIQGLTNTLQGSSINTIRHMVASGLAISVLPATALTE-N--DHMLFSIIPFEGTPPSRRVVLAYR 190 (219)
T ss_dssp HHHHHHHCSTTHHHHHHHTTTSSCEESSHHHHHHHHHHTSCEEEEEGGGCCT-T--CTTTEEEECCSSSCCEEEEEEEEE
T ss_pred HHHHHHHHHhhhhhhccCCCCceEEeCCHHHHHHHHHcCCcEEehhHHHHHh-c--cCCcEEEEecCCCCcceeEEEEEe
Confidence 5555443322 2334456789999999999988777776554444 2 3345555543 333446778888
Q ss_pred CCCcchhHHHHHHHhc
Q 002371 771 RDSPLAIDMSTAILTL 786 (930)
Q Consensus 771 k~spl~~~~n~~i~~l 786 (930)
++.+....+...+..+
T Consensus 191 ~~~~~~~~~~~~~~~l 206 (219)
T 3jv9_A 191 RNFVRPKALSAMKAAI 206 (219)
T ss_dssp TTCSCHHHHHHHHHHH
T ss_pred cCccccHHHHHHHHHH
Confidence 8866555444444333
No 168
>3ho7_A OXYR; beta-alpha-barrels, DNA-binding, transcription, transcriptio regulation; 1.58A {Porphyromonas gingivalis}
Probab=95.06 E-value=0.19 Score=49.95 Aligned_cols=84 Identities=13% Similarity=0.054 Sum_probs=58.1
Q ss_pred CcceEEEecCcccccccEEeecCcceEEEEeHHHHHHHHHHCCCcccEEEEeCCCCCCCCCHHHHHHHHHcCcccEEEec
Q 002371 461 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGD 540 (930)
Q Consensus 461 g~~lrv~v~~~~~~~p~~~~~~~~~~~~G~~~dll~~l~~~ln~~~~~~~~~~~~~~~n~~~~~l~~~l~~g~~D~~~~~ 540 (930)
..+||||+.. .+. ..+..+++..+.++.+ .++++... ++..+++.+|.+|++|+++..
T Consensus 10 ~g~l~Ig~~~--~~~------------~~~l~~~l~~~~~~~P-~v~i~~~~-------~~~~~~~~~l~~g~~Dl~i~~ 67 (232)
T 3ho7_A 10 TGRLNIAVLP--TIA------------PYLLPRVFPIWKKELA-GLEIHVSE-------MQTSRCLASLLSGEIDMAIIA 67 (232)
T ss_dssp CEEEEEEECT--TTH------------HHHHHHHHHHHHHHST-TEEEEEEE-------CCHHHHHHHHHHTSCSEEEES
T ss_pred ceeEEEEecc--ccc------------hhhhHHHHHHHHHHCC-CcEEEEEe-------CCHHHHHHHHHcCCCCEEEEc
Confidence 3578998875 211 1245677888888875 45666665 568899999999999999874
Q ss_pred EEEecCccceeeecccccccceEEEEeccC
Q 002371 541 IAIVTNRTKAVDFTQPYIESGLVVVAPVRK 570 (930)
Q Consensus 541 ~~~t~~R~~~vdfs~p~~~~~~~~~v~~~~ 570 (930)
..... ..+. +.++....+++++++..
T Consensus 68 ~~~~~---~~l~-~~~l~~~~~~~v~~~~h 93 (232)
T 3ho7_A 68 SKAET---EGLE-DDLLYYEEFLGYVSRCE 93 (232)
T ss_dssp SCCCC---TTEE-EEEEEEEEEEEEECTTS
T ss_pred CCCCC---CCeE-EEEecccCEEEEEcCCC
Confidence 43222 2222 46777888888888765
No 169
>1zbm_A Hypothetical protein AF1704; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.30A {Archaeoglobus fulgidus} SCOP: c.94.1.1
Probab=94.72 E-value=0.14 Score=53.16 Aligned_cols=99 Identities=14% Similarity=-0.052 Sum_probs=57.7
Q ss_pred HHhhhCCCeEEEE-eCchhHHHHHHhcCCCccceEeCCCHHHHHHHHHcCCcEEEEccc-hhhHHHHhcCcceEEeCC--
Q 002371 683 DTLMTSNDRVGYQ-VGSFAENYLIEELSIPKSRLVALGSPEEYAIALENRTVAAVVDER-PYIDLFLSDHCQFSVRGQ-- 758 (930)
Q Consensus 683 ~dL~~s~~~i~~~-~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~-~~~~~~~~~~~~l~~~~~-- 758 (930)
+||. |++||+. .++....++...+. ..+++ +.+..+...++.+|++||.+... +... +... .+..+..
T Consensus 99 ~DLk--GK~Iav~~~~s~~~~ll~~~l~--~~~~~-~~~~~~~~~al~~G~vDa~~~~~~~~~~-~~~~--g~~~~~~~~ 170 (280)
T 1zbm_A 99 ISLD--GKRIAVPGRYTTANLLLKLAVE--DFEPV-EMPFDRIIQAVLDEEVDAGLLIHEGQIT-YADY--GLKCVLDLW 170 (280)
T ss_dssp CCCT--TCEEEESCTTSHHHHHHHHHCS--SCEEE-ECCGGGHHHHHHTTSSSEEEECSGGGGT-GGGG--TCEEEEEHH
T ss_pred hhcC--CCEEEecCCCcHHHHHHHHHhc--cCceE-ecCHHHHHHHHHcCCCCEEEEechHHhH-HHhc--CCeEeccHH
Confidence 6775 8999996 44544433433222 22444 34667899999999999987543 4444 2222 2222211
Q ss_pred -----cc-ccCc-cEEEecCC-Cc-chhHHHHHHHhcccc
Q 002371 759 -----EF-TKSG-WGFAFPRD-SP-LAIDMSTAILTLSEN 789 (930)
Q Consensus 759 -----~~-~~~~-~~~~~~k~-sp-l~~~~n~~i~~l~e~ 789 (930)
.. .+.+ ..++++++ .| +...|.+++.+..+.
T Consensus 171 ~~~~~~~g~~~~~~~~~~~~~~~p~~v~~~~~a~~~a~~~ 210 (280)
T 1zbm_A 171 DWWSEQVKLPLPLGLNAIRRDLSVEVQEEFLRAMRESIAF 210 (280)
T ss_dssp HHHHTTCSSCEEEEEEEEETTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhCCCCCeeEEEEcccCCHHHHHHHHHHHHHHHHH
Confidence 00 1112 35778888 66 778888888776554
No 170
>4ab5_A Transcriptional regulator, LYSR family; transcription factors; 2.51A {Neisseria meningitidis serogroup B} PDB: 4ab6_A
Probab=94.64 E-value=0.28 Score=48.18 Aligned_cols=195 Identities=9% Similarity=-0.002 Sum_probs=114.9
Q ss_pred CcceEEEecCcccccccEEeecCcceEEEEeHHHHHHHHHHCCCcccEEEEeCCCCCCCCCHHHHHHHHHcCcccEEEec
Q 002371 461 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGD 540 (930)
Q Consensus 461 g~~lrv~v~~~~~~~p~~~~~~~~~~~~G~~~dll~~l~~~ln~~~~~~~~~~~~~~~n~~~~~l~~~l~~g~~D~~~~~ 540 (930)
..+||||+.. ... ..+-.+++..+.++.+ .++++... ++..+++.+|.+|++|+++..
T Consensus 7 ~g~l~Ig~~~--~~~------------~~~l~~~l~~f~~~~P-~i~i~i~~-------~~~~~~~~~l~~g~~Di~i~~ 64 (222)
T 4ab5_A 7 AGELRIAVEC--HTC------------FDWLMPAMGEFRPMWP-QVELDIVS-------GFQADPVGLLLQHRADLAIVS 64 (222)
T ss_dssp TEEEEEECCC--TTT------------HHHHHHHHHHHHHHST-TEEEEEEC-------CCCSCTHHHHHTTSCSEEEES
T ss_pred cceEEEEEeh--HHH------------HHHHHHHHHHHHHHCC-CcEEEEec-------CCHHHHHHHHHcCCcCEEEec
Confidence 3578998875 111 1344678888888875 35566654 456788999999999999874
Q ss_pred EEEecCccceeeecccccccceEEEEeccCCCcCcceecccCchhHHHHHHHHHHHHHHhhhheeeccCCCCCCCCcccc
Q 002371 541 IAIVTNRTKAVDFTQPYIESGLVVVAPVRKLNSSAWAFLRPFTPLMWAVTGVFFLVVGTVVWILEHRLNDEFRGPPRKQI 620 (930)
Q Consensus 541 ~~~t~~R~~~vdfs~p~~~~~~~~~v~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (930)
.... ...+. ..++....+++++++..+...
T Consensus 65 ~~~~---~~~~~-~~~l~~~~~~~v~~~~~pl~~---------------------------------------------- 94 (222)
T 4ab5_A 65 EAEK---QNGIS-FQPLFAYEMVGICAPDHPLAA---------------------------------------------- 94 (222)
T ss_dssp CCCC---CTTEE-EEEEEEEEEEEEECTTSGGGG----------------------------------------------
T ss_pred CCCC---cCCeE-EEEeecCcEEEEecCCChhhc----------------------------------------------
Confidence 3221 22232 467778888888876652110
Q ss_pred hhhHHHHHHHhhccccCCcccchhHHHHHHHHHHHHHhhhhhhhhhheeeeeccccCCCCChHHhhhCCCeEEE-EeCch
Q 002371 621 VTVLWFSFSTMFFAHRENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIDTLMTSNDRVGY-QVGSF 699 (930)
Q Consensus 621 ~~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~s~~~i~~-~~~s~ 699 (930)
...-+++||. +.++.. ..++.
T Consensus 95 --------------------------------------------------------~~~i~~~dL~--~~~~i~~~~~~~ 116 (222)
T 4ab5_A 95 --------------------------------------------------------KNVWTAEDFI--GETLITYPVPDE 116 (222)
T ss_dssp --------------------------------------------------------CSEECGGGGS--SSCEEECSSCGG
T ss_pred --------------------------------------------------------cCCcCHHHHc--CCCEEecCCCcH
Confidence 1223678886 444433 33433
Q ss_pred hHHHHHH---hcCCCccceEeCCCHHHHHHHHHcCCcEEEEccchhhHHHHhcCcceEEeCCccccCccEEEecCCCcch
Q 002371 700 AENYLIE---ELSIPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSDHCQFSVRGQEFTKSGWGFAFPRDSPLA 776 (930)
Q Consensus 700 ~~~~l~~---~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~k~spl~ 776 (930)
....+.+ ..+.... ....++.+.....+..|..-+++.......+..........+........++++.+++.+..
T Consensus 117 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~g~gi~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~ 195 (222)
T 4ab5_A 117 MLDLPKKILIPKNINPP-RRHSELTIAIIQLVASRRGIAALPYWTVMPYLEKGYVVHRQITADGLQSKLYAAIRTEDTDK 195 (222)
T ss_dssp GCHHHHHTTGGGTCCCC-EEECSCHHHHHHHHHTTSCBEEEEHHHHHHHHHTTSCEEEEESTTCCEEEEEEEEEGGGTTC
T ss_pred HHHHHHHHHHHcCCCCC-eEecCCHHHHHHHHHcCCeEEEcchHHhHHHhhcCcEEEEecCCCccceEEEEEEeCCcccC
Confidence 3333322 3344444 67788999999999988766666544333333222222323343333556788888876655
Q ss_pred hHHHHHHHhc
Q 002371 777 IDMSTAILTL 786 (930)
Q Consensus 777 ~~~n~~i~~l 786 (930)
..+...+..+
T Consensus 196 ~~~~~f~~~l 205 (222)
T 4ab5_A 196 SYLNNFCQII 205 (222)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555443
No 171
>3oxn_A Putative transcriptional regulator, LYSR family; structural genomics, PSI-2, protein structure initiative; 2.70A {Vibrio parahaemolyticus}
Probab=94.34 E-value=0.62 Score=46.49 Aligned_cols=84 Identities=14% Similarity=0.165 Sum_probs=58.0
Q ss_pred CcceEEEecCcccccccEEeecCcceEEEEeHHHHHHHHHHCCCcccEEEEeCCCCCCCCCHHHHHHHHHcCcccEEEec
Q 002371 461 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGD 540 (930)
Q Consensus 461 g~~lrv~v~~~~~~~p~~~~~~~~~~~~G~~~dll~~l~~~ln~~~~~~~~~~~~~~~n~~~~~l~~~l~~g~~D~~~~~ 540 (930)
..+||||+.. .+. ..+...++..+.++.+ .+++.... ++...++.+|.+|++|+++..
T Consensus 18 ~g~l~Ig~~~--~~~------------~~~l~~~l~~f~~~~P-~i~l~~~~-------~~~~~~~~~l~~g~~Dl~i~~ 75 (241)
T 3oxn_A 18 DQTFTIATTD--YAM------------QTILPFALPRIYQEAP-NVSFNFLP-------LQHDRLSDQLTYEGADLAICR 75 (241)
T ss_dssp CCEEEEEECS--HHH------------HHTHHHHHHHHHHHCT-TCEEEEEE-------CCGGGHHHHHHTSCCSEEEEC
T ss_pred CceEEEEech--HHH------------HHHHHHHHHHHHHHCC-CCEEEEEE-------CCcccHHHHHHcCCCCEEEec
Confidence 4689999985 111 2345678888888865 35566655 567899999999999999873
Q ss_pred EEEecCccceeeecccccccceEEEEeccC
Q 002371 541 IAIVTNRTKAVDFTQPYIESGLVVVAPVRK 570 (930)
Q Consensus 541 ~~~t~~R~~~vdfs~p~~~~~~~~~v~~~~ 570 (930)
. ......+. ..++....+++++++..
T Consensus 76 ~---~~~~~~~~-~~~l~~~~~~~v~~~~h 101 (241)
T 3oxn_A 76 P---TGPVEPLR-SEILGRVGVLCLLSKQH 101 (241)
T ss_dssp C---SSCCTTEE-EEEEECCCEEEEEETTS
T ss_pred C---CCCCccce-eEEeecccEEEEEeCCC
Confidence 2 22222333 46677888999988766
No 172
>2xed_A Putative maleate isomerase; nicotinic acid catabolism, cofactor-independent CIS-trans isomerase; 1.95A {Nocardia farcinica} PDB: 2xec_A
Probab=94.29 E-value=0.48 Score=48.72 Aligned_cols=127 Identities=17% Similarity=0.089 Sum_probs=83.7
Q ss_pred HHHHHHhcCcEEEEccCChhhHH--------HHHHhhhcC-----CCcEEEeecCCCCCCCCCCCeEEEccCChHHHHHH
Q 002371 83 GALQFMETDTLAIVGPQSAVMAH--------VLSHLANEL-----QVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSA 149 (930)
Q Consensus 83 ~a~~li~~~v~aiiGp~~S~~~~--------av~~~~~~~-----~vp~is~~a~~~~ls~~~~~~~fr~~p~~~~~~~a 149 (930)
++++|.+.++++|+-+-++.... ....+.+.. ++|+++. +.+
T Consensus 82 aa~~L~~~g~d~IviaCnta~~~~G~~~~~~~~~~l~~~~~~~~~~iPv~~~-------------------------~~A 136 (273)
T 2xed_A 82 CVLEIADAAPEVILYACLVAVMVGGPGEHHRVESAVAEQLATGGSQALVRSS-------------------------AGA 136 (273)
T ss_dssp HHHHHHTTCCSEEEECCHHHHHTTCTTHHHHHHHHHHHHHHHTTCCCEEEEH-------------------------HHH
T ss_pred HHHHHhhcCCCEEEECCChHHHhcccchhHHHHHHHHHHhhccCCCCCEecH-------------------------HHH
Confidence 44555555899988766654322 123444445 8898862 255
Q ss_pred HHHHHHHcCCcEEEEEEecCCcCcchHHHHHHHHHhcCcEEEEEEecCCCC-----CCChhHHHHHHHHHhcCCceEEEE
Q 002371 150 IAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQ-----SVTETDVRNELVKVRMMEARVIVV 224 (930)
Q Consensus 150 i~~~l~~~~w~~vaii~~d~~~g~~~~~~~~~~l~~~g~~i~~~~~~~~~~-----~~~~~d~~~~l~~l~~~~~~viv~ 224 (930)
+++.++..|.++|+++. .|.....+.+.+.+++.|++++......... ......+...+.++...++|+||+
T Consensus 137 ~~~al~~~g~~rvgvlt---p~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~g~~~~~~l~~~~~~l~~~gadaIvL 213 (273)
T 2xed_A 137 LVEGLRALDAQRVALVT---PYMRPLAEKVVAYLEAEGFTISDWRALEVADNTEVGCIPGEQVMAAARSLDLSEVDALVI 213 (273)
T ss_dssp HHHHHHHTTCCEEEEEE---CSCHHHHHHHHHHHHHTTCEEEEEEECCCCBHHHHHTCCHHHHHHHHHHSCCTTCSEEEE
T ss_pred HHHHHHHcCCCeEEEEc---CChhhhHHHHHHHHHHCCCEEeccccCCCccchhhcccCHHHHHHHHHHHhhCCCCEEEE
Confidence 66666778889999996 5666667789999999999987655443210 123456777777887778999999
Q ss_pred E-cchhhHHHHHHH
Q 002371 225 H-GYSRTGLMVFDV 237 (930)
Q Consensus 225 ~-~~~~~~~~~~~~ 237 (930)
. |..-....+..+
T Consensus 214 g~CT~l~~~~~~~~ 227 (273)
T 2xed_A 214 SCAVQMPSLPLVET 227 (273)
T ss_dssp ESSSSSCCTTHHHH
T ss_pred cCCCCcchHHhHHH
Confidence 8 776443333333
No 173
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=93.93 E-value=0.097 Score=47.59 Aligned_cols=57 Identities=16% Similarity=0.331 Sum_probs=50.0
Q ss_pred ccchhhHHHHHHHhhccc--cCCcccchhHHHHHHHHHHHHHhhhhhhhhhheeeeecc
Q 002371 618 KQIVTVLWFSFSTMFFAH--RENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQ 674 (930)
Q Consensus 618 ~~~~~~~~~~~~~l~~~~--~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~ 674 (930)
.++.+++|+++.++..-| .-.|.+..+|++.++|+++++.+.+...+.+++.+....
T Consensus 42 ~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~g~~~~~~~~~~i~~~~~~~~ 100 (137)
T 4h33_A 42 NNYPDALWWAIVTATTVGYGDIVPVTPIGRILASIMMLFGIAFIGMITSTITNFFRCKK 100 (137)
T ss_dssp CSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTT
T ss_pred CCHHHHHHHHHHHHHcccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 358899999999998776 338999999999999999999999999999999886543
No 174
>1us5_A Putative GLUR0 ligand binding core; receptor, membrane protein, glutamate receptor, L-glutamate; HET: GLU; 1.5A {Thermus thermophilus} SCOP: c.94.1.1 PDB: 1us4_A*
Probab=93.52 E-value=0.25 Score=52.13 Aligned_cols=61 Identities=20% Similarity=0.202 Sum_probs=41.9
Q ss_pred CCCCChHHhhhCCCeEEE-EeCchhHHHH---HHhcCCCccce--EeCCCHHHHHHHHHcCCcEEEEcc
Q 002371 677 SPIKGIDTLMTSNDRVGY-QVGSFAENYL---IEELSIPKSRL--VALGSPEEYAIALENRTVAAVVDE 739 (930)
Q Consensus 677 ~~i~sl~dL~~s~~~i~~-~~~s~~~~~l---~~~~~~~~~~~--~~~~~~~~~~~~l~~g~~~a~~~~ 739 (930)
.++++++||. ++++++ ..|+..+..+ .+..+.....+ +.+.+..+.+.++..|++|+.+..
T Consensus 121 ~~i~sl~dL~--g~~i~~~~~gs~~~~~~~~~l~~~G~~~~~v~~~~~~~~~~~~~al~~G~vda~~~~ 187 (314)
T 1us5_A 121 AGIRTVADLK--GKRVVVGDVGSGTEQNARQILEAYGLTFDDLGQAIRVSASQGIQLMQDKRADALFYT 187 (314)
T ss_dssp SSCSSGGGGT--TSEEECCCTTCHHHHHHHHHHHHTTCCGGGSSEEECCCHHHHHHHHHTTSCSEEEEE
T ss_pred CCCCcHHHhC--CCEeecCCCCchHHHHHHHHHHHcCCCHHHcCceecCCHHHHHHHHHcCCccEEEEc
Confidence 3688999997 778887 4566433322 23445543333 356688899999999999998865
No 175
>3fzv_A Probable transcriptional regulator; LYSR, structural genomics, PSI-2, structure initiative; 2.71A {Pseudomonas aeruginosa PA01}
Probab=93.20 E-value=1.8 Score=44.94 Aligned_cols=194 Identities=15% Similarity=0.117 Sum_probs=114.2
Q ss_pred CcceEEEecCcccccccEEeecCcceEEEEeHHHHHHHHHHCCCcccEEEEeCCCCCCCCCHHHHHHHHHcCcccEEEec
Q 002371 461 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGD 540 (930)
Q Consensus 461 g~~lrv~v~~~~~~~p~~~~~~~~~~~~G~~~dll~~l~~~ln~~~~~~~~~~~~~~~n~~~~~l~~~l~~g~~D~~~~~ 540 (930)
..+|+||+.. .+. ..+..+++..+.++.+ .+++.... ++..+++..|.+|++|+++..
T Consensus 94 ~g~l~i~~~~--~~~------------~~~l~~~l~~f~~~~P-~i~i~l~~-------~~~~~~~~~l~~g~~Dl~i~~ 151 (306)
T 3fzv_A 94 AGQIDIGCFE--TVA------------PLYLPGLIAGFRQAYP-GVEIRIRD-------GEQQELVQGLTSGRFDLAFLY 151 (306)
T ss_dssp CEEEEEEEEG--GGH------------HHHHHHHHHHHHHHCT-TEEEEEEE-------ECHHHHHHHHHHTSCSEEEEC
T ss_pred CceEEEEech--hhh------------HHHHHHHHHHHHHHCC-CeEEEEEe-------CCHHHHHHHHHCCCccEEEEe
Confidence 3679999985 211 2344678888888875 35566554 568899999999999999863
Q ss_pred EEEecCccceeeeccccc-ccceEEEEeccCCCcCcceecccCchhHHHHHHHHHHHHHHhhhheeeccCCCCCCCCccc
Q 002371 541 IAIVTNRTKAVDFTQPYI-ESGLVVVAPVRKLNSSAWAFLRPFTPLMWAVTGVFFLVVGTVVWILEHRLNDEFRGPPRKQ 619 (930)
Q Consensus 541 ~~~t~~R~~~vdfs~p~~-~~~~~~~v~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 619 (930)
.. .....+. ..++. ...++++++...+...
T Consensus 152 ~~---~~~~~l~-~~~l~~~~~~~~v~~~~~pl~~--------------------------------------------- 182 (306)
T 3fzv_A 152 EH---DLDSTIE-TEPLMPPQRPHALLPEGHRFAG--------------------------------------------- 182 (306)
T ss_dssp SS---SCCTTEE-EEESSCCBCCEEEEETTCTTTT---------------------------------------------
T ss_pred cc---ccccccc-eeeeeeccccEEEecCCCcccC---------------------------------------------
Confidence 21 2222233 34555 6777777776552110
Q ss_pred chhhHHHHHHHhhccccCCcccchhHHHHHHHHHHHHHhhhhhhhhhheeeeeccccCCCCChHHhhhCCCeEEEE-eCc
Q 002371 620 IVTVLWFSFSTMFFAHRENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIDTLMTSNDRVGYQ-VGS 698 (930)
Q Consensus 620 ~~~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~s~~~i~~~-~~s 698 (930)
...-+++||. +.++... .+.
T Consensus 183 ---------------------------------------------------------~~~~~~~dL~--~~~~i~~~~~~ 203 (306)
T 3fzv_A 183 ---------------------------------------------------------QAQVSLRDLC--LEPMILLDVQP 203 (306)
T ss_dssp ---------------------------------------------------------SSEECHHHHT--TSCEEEECCTT
T ss_pred ---------------------------------------------------------CCCCCHHHHc--CCCEEEecCCc
Confidence 2234788996 4444433 332
Q ss_pred h---hHHHHHHhcCCCccceEeCCCHHHHHHHHHcCCcEEEEccchhhHHHHhcCcceEEe--CCccccCccEEEecCCC
Q 002371 699 F---AENYLIEELSIPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSDHCQFSVR--GQEFTKSGWGFAFPRDS 773 (930)
Q Consensus 699 ~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~k~s 773 (930)
. ...++ +..+.........++.+.....+..|.--+++-......+. .....+..+ ........++++.+++.
T Consensus 204 ~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~v~~g~Gia~lp~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~l~~~~~~ 281 (306)
T 3fzv_A 204 SRTYFVSLF-EELGLTPNIAFSSPSIEMVRGMVGQGFGFSLLVTRPHSECT-YDGKKVVMVDLAEPVSTSGLAAAWLKRA 281 (306)
T ss_dssp HHHHHHHHH-HHTTCCCCEEEEESCHHHHHHHHHTTSCBEEECCCCSCSBC-TTSCBEEEEEESSCCCBCCCEEEEETTS
T ss_pred chHHHHHHH-HHcCCCCCeEEEeCCHHHHHHHHHcCCCEEEEecccccccc-cCCCceEEEECCCCCccceEEEEEeCCc
Confidence 2 22333 33455545556778999999999987665666544333222 112224444 33444567888888886
Q ss_pred cchhHHHHHHHhc
Q 002371 774 PLAIDMSTAILTL 786 (930)
Q Consensus 774 pl~~~~n~~i~~l 786 (930)
+....+...+..+
T Consensus 282 ~~~~~~~~f~~~l 294 (306)
T 3fzv_A 282 QLTKPARLFVDYC 294 (306)
T ss_dssp CCCHHHHHHHHHH
T ss_pred ccCHHHHHHHHHH
Confidence 6555555444433
No 176
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A
Probab=93.16 E-value=0.19 Score=40.93 Aligned_cols=52 Identities=13% Similarity=0.131 Sum_probs=45.8
Q ss_pred cchhhHHHHHHHhhccc--cCCcccchhHHHHHHHHHHHHHhhhhhhhhhheee
Q 002371 619 QIVTVLWFSFSTMFFAH--RENTVSTLGRVVLIIWLFVVLIITSSYTASLTSIL 670 (930)
Q Consensus 619 ~~~~~~~~~~~~l~~~~--~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~L 670 (930)
++.+++|+++.++...| .-.|.+..+|++.+.|.++++.+.+...+.+.+.+
T Consensus 28 ~~~~a~yf~~~T~tTvGyGdi~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~l 81 (82)
T 3ldc_A 28 SWTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVAVERLLEFL 81 (82)
T ss_dssp CHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58899999999998776 34789999999999999999999999998887754
No 177
>1atg_A MODA, periplasmic molybdate-binding protein; tungstate, ABC transporter; 1.20A {Azotobacter vinelandii} SCOP: c.94.1.1
Probab=92.99 E-value=0.39 Score=47.50 Aligned_cols=70 Identities=11% Similarity=-0.022 Sum_probs=44.2
Q ss_pred HHHHHHHHHHCCCcccEEEEeCCCCCCCCCHHHHHHHHHcCc-ccEEEecEEEecC---ccceee--ecccccccceEEE
Q 002371 492 IDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGV-FDAAVGDIAIVTN---RTKAVD--FTQPYIESGLVVV 565 (930)
Q Consensus 492 ~dll~~l~~~ln~~~~~~~~~~~~~~~n~~~~~l~~~l~~g~-~D~~~~~~~~t~~---R~~~vd--fs~p~~~~~~~~~ 565 (930)
-++++.+.++-|.++++.. ++...++.+|.+|+ +|+++..-....+ ....+. -..|+....++++
T Consensus 15 ~~~~~~F~~~p~i~v~~~~---------~~s~~l~~~l~~g~~~Dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlv 85 (231)
T 1atg_A 15 EQLAGQFAKQTGHAVVISS---------GSSGPVYAQIVNGAPYNVFFSADEKSPEKLDNQGFALPGSRFTYAIGKLVLW 85 (231)
T ss_dssp HHHHHHHHHHHCCCEEEEE---------ECHHHHHHHHHTTCCCSEEECSSSHHHHHHHHTTCBCTTCCEEEEECCEEEE
T ss_pred HHHHHHHHhccCCeEEEEE---------CCcHHHHHHHHcCCCCCEEEeCChhHHHHHHhcCCCcCCceeEeeeeeEEEE
Confidence 4677777777776655543 44678999999998 9998763211111 111111 2467888888888
Q ss_pred EeccC
Q 002371 566 APVRK 570 (930)
Q Consensus 566 v~~~~ 570 (930)
+++..
T Consensus 86 ~~~~~ 90 (231)
T 1atg_A 86 SAKPG 90 (231)
T ss_dssp ESSTT
T ss_pred EcCCC
Confidence 87655
No 178
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=92.67 E-value=0.33 Score=56.14 Aligned_cols=123 Identities=11% Similarity=0.115 Sum_probs=78.6
Q ss_pred cchhhHHHHHHHhhccccC--CcccchhHHHHHHHHHHHHHhhhhhhhh-hheeeeeccccCCC-----CCh-HHhhhCC
Q 002371 619 QIVTVLWFSFSTMFFAHRE--NTVSTLGRVVLIIWLFVVLIITSSYTAS-LTSILTVQQLSSPI-----KGI-DTLMTSN 689 (930)
Q Consensus 619 ~~~~~~~~~~~~l~~~~~~--~~~s~~~R~l~~~w~~~~lil~~~Yta~-L~s~Lt~~~~~~~i-----~sl-~dL~~s~ 689 (930)
.+.+++||++.++...|.. .|.+..+|++.++|.++++.+.....+. ++++++.+..+... ... +.+ .
T Consensus 51 ~~~~~~y~~~~t~tTvGygd~~p~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 127 (565)
T 4gx0_A 51 SFMAGIYWTITVMTTLGFGDITFESDAGYLFASIVTVSGVIFLDIILPFGFVSMFLAPWIERRLRYHPTIELPDDT---R 127 (565)
T ss_dssp CHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTSCCCBCCCCTTC---C
T ss_pred chhhhhheeeeeeeeecCCCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccc---C
Confidence 6899999999999877633 7889999999999999999888877776 55555433222111 111 222 2
Q ss_pred CeEEEE-eCchhHHHHHHhcCCCccceEeCCCHHHHHHHHHcC-CcEEEEccchhhHH
Q 002371 690 DRVGYQ-VGSFAENYLIEELSIPKSRLVALGSPEEYAIALENR-TVAAVVDERPYIDL 745 (930)
Q Consensus 690 ~~i~~~-~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g-~~~a~~~~~~~~~~ 745 (930)
.++.+. .|.+..... +.+......++..+..++..+.+.+. ++.++..+...-+.
T Consensus 128 ~hviI~G~g~~g~~la-~~L~~~~~~vvvid~~~~~~~~~~~~~~~~~i~Gd~~~~~~ 184 (565)
T 4gx0_A 128 GHILIFGIDPITRTLI-RKLESRNHLFVVVTDNYDQALHLEEQEGFKVVYGSPTDAHV 184 (565)
T ss_dssp SCEEEESCCHHHHHHH-HHTTTTTCCEEEEESCHHHHHHHHHSCSSEEEESCTTCHHH
T ss_pred CeEEEECCChHHHHHH-HHHHHCCCCEEEEECCHHHHHHHHHhcCCeEEEeCCCCHHH
Confidence 234443 344444433 44444445566667777777777777 78888777544433
No 179
>2fyi_A HTH-type transcriptional regulator CBL; Lys-R family, cofactor-binding DO cysteine biosynthesis; 2.80A {Escherichia coli K12} SCOP: c.94.1.1
Probab=92.64 E-value=2.7 Score=41.27 Aligned_cols=196 Identities=10% Similarity=0.059 Sum_probs=117.4
Q ss_pred CcceEEEecCcccccccEEeecCcceEEEEeHHHHHHHHHHCCCcccEEEEeCCCCCCCCCHHHHHHHHHcCcccEEEec
Q 002371 461 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGD 540 (930)
Q Consensus 461 g~~lrv~v~~~~~~~p~~~~~~~~~~~~G~~~dll~~l~~~ln~~~~~~~~~~~~~~~n~~~~~l~~~l~~g~~D~~~~~ 540 (930)
..+||||+.. .+ ...+-.+++..+.++.+ .++++... ++..+++.+|.+|++|++++.
T Consensus 13 ~g~lrIg~~~--~~------------~~~~l~~~l~~f~~~~P-~v~l~l~~-------~~~~~~~~~l~~g~~Dl~i~~ 70 (228)
T 2fyi_A 13 SGVLTIATTH--TQ------------ARYSLPEVIKAFRELFP-EVRLELIQ-------GTPQEIATLLQNGEADIGIAS 70 (228)
T ss_dssp CEEEEEEECH--HH------------HHHTHHHHHHHHHHHCT-TEEEEEEE-------CCHHHHHHHHHHTSCSEEEES
T ss_pred cceEEEeecc--ch------------HHHHHHHHHHHHHHHCC-CcEEEEEe-------CCHHHHHHHHHcCCccEEEEe
Confidence 3579999874 11 12345678888988886 46676665 568899999999999999863
Q ss_pred EEEecCccceeeecccccccceEEEEeccCCCcCcceecccCchhHHHHHHHHHHHHHHhhhheeeccCCCCCCCCcccc
Q 002371 541 IAIVTNRTKAVDFTQPYIESGLVVVAPVRKLNSSAWAFLRPFTPLMWAVTGVFFLVVGTVVWILEHRLNDEFRGPPRKQI 620 (930)
Q Consensus 541 ~~~t~~R~~~vdfs~p~~~~~~~~~v~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (930)
.. ......+. ..++....++++++...+..
T Consensus 71 ~~--~~~~~~l~-~~~l~~~~~~~v~~~~hpla----------------------------------------------- 100 (228)
T 2fyi_A 71 ER--LSNDPQLV-AFPWFRWHHSLLVPHDHPLT----------------------------------------------- 100 (228)
T ss_dssp SS--STTCTTEE-EEEEEEECEEEEEETTCGGG-----------------------------------------------
T ss_pred cc--cCCCCCce-EEEeeecceEEEecCCCCcc-----------------------------------------------
Confidence 11 11112232 35777888888888655210
Q ss_pred hhhHHHHHHHhhccccCCcccchhHHHHHHHHHHHHHhhhhhhhhhheeeeeccccCCCCChHHhhhCCCe-EEEEeCch
Q 002371 621 VTVLWFSFSTMFFAHRENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIDTLMTSNDR-VGYQVGSF 699 (930)
Q Consensus 621 ~~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~s~~~-i~~~~~s~ 699 (930)
....-+++||. +.+ |....++.
T Consensus 101 -------------------------------------------------------~~~~i~~~dL~--~~~~i~~~~~~~ 123 (228)
T 2fyi_A 101 -------------------------------------------------------QISPLTLESIA--KWPLITYRQGIT 123 (228)
T ss_dssp -------------------------------------------------------TSSSCCHHHHT--TSCEEEECTTST
T ss_pred -------------------------------------------------------ccCccCHHHHc--CCCeEEecCCcc
Confidence 02335788996 444 43443433
Q ss_pred hHHHHH---HhcCCCccceEeCCCHHHHHHHHHcCCcEEEEccchhhHHHHhcCcceEEeCC--ccccCccEEEecCCCc
Q 002371 700 AENYLI---EELSIPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSDHCQFSVRGQ--EFTKSGWGFAFPRDSP 774 (930)
Q Consensus 700 ~~~~l~---~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~k~sp 774 (930)
....+. ...+.........++.+.....+..|.--+++-+... ... ...++..+.- ......++++.+++.+
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~G~Gia~lp~~~~-~~~--~~~~l~~~~~~~~~~~~~~~l~~~~~~~ 200 (228)
T 2fyi_A 124 GRSRIDDAFARKGLLADIVLSAQDSDVIKTYVALGLGIGLVAEQSS-GEQ--EEENLIRLDTRHLFDANTVWLGLKRGQL 200 (228)
T ss_dssp THHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTSCEEEEEGGGG-STT--CCTTEEEECCTTTSCCEEEEEEEETTCC
T ss_pred HHHHHHHHHHHcCCCcceEEEeCCHHHHHHHHHhCCCEEEeehHhh-hhc--ccCCeEEEECCCcccceEEEEEEeCCCc
Confidence 233221 2334443444667888999999988777677654322 111 1234555532 2223456788888877
Q ss_pred chhHHHHHHHhccc
Q 002371 775 LAIDMSTAILTLSE 788 (930)
Q Consensus 775 l~~~~n~~i~~l~e 788 (930)
+...+...+..+.+
T Consensus 201 ~~~~~~~f~~~l~~ 214 (228)
T 2fyi_A 201 QRNYVWRFLELCNA 214 (228)
T ss_dssp BCHHHHHHHHHHCS
T ss_pred CCHHHHHHHHHHHH
Confidence 76666666655544
No 180
>2esn_A Probable transcriptional regulator; PA0477, APC5828,transcription, PSI, protein struc initiative, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.37 c.94.1.1
Probab=92.63 E-value=2 Score=44.77 Aligned_cols=84 Identities=13% Similarity=0.175 Sum_probs=54.5
Q ss_pred CcceEEEecCcccccccEEeecCcceEEEEeHHHHHHHHHHCCCcccEEEEeCCCCCCCCCHHHHHHHHHcCcccEEEec
Q 002371 461 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGD 540 (930)
Q Consensus 461 g~~lrv~v~~~~~~~p~~~~~~~~~~~~G~~~dll~~l~~~ln~~~~~~~~~~~~~~~n~~~~~l~~~l~~g~~D~~~~~ 540 (930)
..+||||+.. ... ..+-.+++..+.++.+ .+++.... ++..+++..|.+|++|+++..
T Consensus 100 ~~~l~Ig~~~--~~~------------~~~l~~~l~~f~~~~P-~i~i~l~~-------~~~~~~~~~l~~g~~Dl~i~~ 157 (310)
T 2esn_A 100 QRTFVFAATD--YTA------------FALLPPLMNRLQHSAP-GVRLRLVN-------AERKLSVEALASGRIDFALGY 157 (310)
T ss_dssp CCEEEEECCH--HHH------------HHHHHHHHHHHHHHST-TCEEEEEC-------CSSSCCHHHHHHTSSSEEEEC
T ss_pred CceEEEEeCh--HHH------------HHHHHHHHHHHHHHCC-CeEEEEEe-------CCcccHHHHHHcCCCCEEEec
Confidence 3579999874 111 1344677888888875 35666654 345578889999999999863
Q ss_pred ---EEEecCccceeeecccccccceEEEEeccC
Q 002371 541 ---IAIVTNRTKAVDFTQPYIESGLVVVAPVRK 570 (930)
Q Consensus 541 ---~~~t~~R~~~vdfs~p~~~~~~~~~v~~~~ 570 (930)
... ....+. ..++....++++++...
T Consensus 158 ~~~~~~---~~~~l~-~~~l~~~~~~~v~~~~~ 186 (310)
T 2esn_A 158 DEEHER---LPEGIQ-AHDWFADRYVVVARRDH 186 (310)
T ss_dssp CSTTCC---CCTTEE-EEEEEEECEEEEEESSC
T ss_pred Cccccc---CCcCcc-eeeeeccceEEEEeCCC
Confidence 211 112222 35677788888887655
No 181
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Probab=92.62 E-value=0.13 Score=43.46 Aligned_cols=58 Identities=14% Similarity=0.324 Sum_probs=51.2
Q ss_pred cchhhHHHHHHHhhccc--cCCcccchhHHHHHHHHHHHHHhhhhhhhhhheeeeecccc
Q 002371 619 QIVTVLWFSFSTMFFAH--RENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQLS 676 (930)
Q Consensus 619 ~~~~~~~~~~~~l~~~~--~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~ 676 (930)
.+.+++|+++.++...| .-.|.+..+|++.++|.++++.+.+...+.+.+.++.+...
T Consensus 32 ~~~~a~yf~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~i~~i~~~~~~~~~~ 91 (97)
T 3ouf_A 32 RPIDALYFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPSIL 91 (97)
T ss_dssp CHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred CHHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 58899999999998776 33789999999999999999999999999999988876654
No 182
>2zzv_A ABC transporter, solute-binding protein; periplasmic substrate binding protein, calcium, lactate, trap transporter, transport protein; 1.40A {Thermus thermophilus} PDB: 2zzw_A 2zzx_A
Probab=92.51 E-value=0.46 Score=51.26 Aligned_cols=59 Identities=19% Similarity=0.220 Sum_probs=44.7
Q ss_pred CCCCChHHhhhCCCeEEEEeCchhHHHHHHhcCCCccceEeCCCHHHHHHHHHcCCcEEEEccchhh
Q 002371 677 SPIKGIDTLMTSNDRVGYQVGSFAENYLIEELSIPKSRLVALGSPEEYAIALENRTVAAVVDERPYI 743 (930)
Q Consensus 677 ~~i~sl~dL~~s~~~i~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~ 743 (930)
.+|++++||. |++|.+. +......+ +.++. ..+++ ...|...+|++|.+|+.....+..
T Consensus 164 ~pI~s~~DLk--G~kirv~-~~~~~~~~-~~lGa---~pv~~-~~~e~~~ALq~G~VDg~~~~~~~~ 222 (361)
T 2zzv_A 164 KPIRRFEDFK--GVKLRVP-GGMIAEVF-AAAGA---STVLL-PGGEVYPALERGVIDAADFVGPAV 222 (361)
T ss_dssp SCCCSGGGGT--TCEEECC-SHHHHHHH-HHTTC---EEECC-CGGGHHHHHHTTSCSEEECSCHHH
T ss_pred CCcCChHHhC--CCEEeec-CHHHHHHH-HHcCC---eeeec-ChHHHHHHHHcCCcceeecCCcch
Confidence 6899999996 9999888 55555555 45553 23333 677899999999999998776665
No 183
>2hxr_A HTH-type transcriptional regulator CYNR; CYNR transcriptional regulator LYSR struc genomics, PSI-2, protein structure initiative; 2.05A {Escherichia coli} PDB: 3hfu_A
Probab=92.42 E-value=3.1 Score=41.08 Aligned_cols=83 Identities=11% Similarity=0.218 Sum_probs=56.0
Q ss_pred cceEEEecCcccccccEEeecCcceEEEEeHHHHHHHHHHCCCcccEEEEeCCCCCCCCCHHHHHHHHHcCcccEEEecE
Q 002371 462 RQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGDI 541 (930)
Q Consensus 462 ~~lrv~v~~~~~~~p~~~~~~~~~~~~G~~~dll~~l~~~ln~~~~~~~~~~~~~~~n~~~~~l~~~l~~g~~D~~~~~~ 541 (930)
.+||||+.. .+ ...+-..++..+.++.+ .++++... ++..+++.+|.+|++|+++...
T Consensus 30 g~l~Ig~~~--~~------------~~~~l~~~l~~f~~~~P-~v~l~~~~-------~~~~~~~~~l~~g~~Dl~i~~~ 87 (238)
T 2hxr_A 30 GSLRIAVTP--TF------------TSYFIGPLMADFYARYP-SITLQLQE-------MSQEKIEDMLCRDELDVGIAFA 87 (238)
T ss_dssp -CEEEEECH--HH------------HTTTHHHHHHHHHHHCT-TSCEEEEE-------CCHHHHHHHHHTTSCSEEEEES
T ss_pred CeEEEeech--hh------------HHHHHHHHHHHHHHhCC-CcEEEEEE-------CCHHHHHHHHHcCCCcEEEEcC
Confidence 579999874 11 12344677888888876 46666665 5678999999999999998632
Q ss_pred EEecCccceeeecccccccceEEEEeccC
Q 002371 542 AIVTNRTKAVDFTQPYIESGLVVVAPVRK 570 (930)
Q Consensus 542 ~~t~~R~~~vdfs~p~~~~~~~~~v~~~~ 570 (930)
+.....+. +.++....++++++...
T Consensus 88 ---~~~~~~l~-~~~l~~~~~~~v~~~~h 112 (238)
T 2hxr_A 88 ---PVHSPELE-AIPLLTESLALVVAQHH 112 (238)
T ss_dssp ---SCCCTTEE-EEEEEEEEEEEEEETTS
T ss_pred ---CCCcccce-eeeeccCcEEEEEcCCC
Confidence 11122233 35778888888888655
No 184
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*
Probab=92.00 E-value=0.24 Score=52.13 Aligned_cols=62 Identities=11% Similarity=0.096 Sum_probs=52.9
Q ss_pred CCCcccchhhHHHHHHHhhcccc--CCcccchhHHHHHHHHHHHHHhhhhhhhhhheeeeeccc
Q 002371 614 GPPRKQIVTVLWFSFSTMFFAHR--ENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQL 675 (930)
Q Consensus 614 ~~~~~~~~~~~~~~~~~l~~~~~--~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~ 675 (930)
+....++.+++||++.++...|. -.|.+..+|++.+++.++++++.+.-++.+.+.++.+..
T Consensus 91 ~~~~~s~~~a~yfs~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~ig~i~~~~~~~~~ 154 (333)
T 1p7b_A 91 NQSPPGFVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALSTGLVFARFARPRA 154 (333)
T ss_dssp CSSSSSTHHHHHHHTTTTTTCCCSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCC
T ss_pred CCCCCcHHHhHhhhheeeeecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33345789999999999987763 378999999999999999999999999999999987653
No 185
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=91.94 E-value=0.16 Score=54.38 Aligned_cols=124 Identities=10% Similarity=0.010 Sum_probs=75.7
Q ss_pred cchhhHHHHHHHhhcccc--CCcccchhHHHHHHHHHHHHHhhhhhhhhhheeeeeccccCCCCChHHhhhCCCeEEEEe
Q 002371 619 QIVTVLWFSFSTMFFAHR--ENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIDTLMTSNDRVGYQV 696 (930)
Q Consensus 619 ~~~~~~~~~~~~l~~~~~--~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~s~~~i~~~~ 696 (930)
++.+++||++.++...|. -.|.+..+|++.++|.++++++.+...+.+++.++.......... ....+ ..++.+..
T Consensus 45 ~~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~viI~G 122 (336)
T 1lnq_A 45 SWTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFLINREQMKLMGL-IDVAK-SRHVVICG 122 (336)
T ss_dssp CSSTTHHHHHHHHTTCCCSSCCCCCSSHHHHHTHHHHTTSTTTTTHHHHHTTTC-------------------CEEEEES
T ss_pred CHHHHHHHHHHHhhcccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhcc-cCCEEEEC
Confidence 578899999999987763 378899999999999999999999999999999988765432221 11111 22444433
Q ss_pred -CchhHHHHHHhcCCCccceEeCCCHHHHHHHHHcCCcEEEEccchhhHHHH
Q 002371 697 -GSFAENYLIEELSIPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLFL 747 (930)
Q Consensus 697 -~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~ 747 (930)
|..... +.+.+..... ++..+..++..+ +.+.+..++..+....+.+.
T Consensus 123 ~G~~g~~-l~~~L~~~g~-v~vid~~~~~~~-~~~~~~~~i~gd~~~~~~L~ 171 (336)
T 1lnq_A 123 WSESTLE-CLRELRGSEV-FVLAEDENVRKK-VLRSGANFVHGDPTRVSDLE 171 (336)
T ss_dssp CCHHHHH-HHTTGGGSCE-EEEESCGGGHHH-HHHTTCEEEESCTTSHHHHH
T ss_pred CcHHHHH-HHHHHHhCCc-EEEEeCChhhhh-HHhCCcEEEEeCCCCHHHHH
Confidence 333333 3344432333 555666666666 66667777777755544443
No 186
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=91.73 E-value=0.018 Score=54.53 Aligned_cols=60 Identities=20% Similarity=0.221 Sum_probs=52.1
Q ss_pred CCcccchhhHHHHHHHhhccc--cCCcccchhHHHHHHHHHHHHHhhhhhhhhhheeeeecc
Q 002371 615 PPRKQIVTVLWFSFSTMFFAH--RENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQ 674 (930)
Q Consensus 615 ~~~~~~~~~~~~~~~~l~~~~--~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~ 674 (930)
+...++.+++||++.++...| .-.|.+..+|++.++|.++++++.+...+.+++.++...
T Consensus 63 ~~~~~~~~a~yf~~~T~tTvGyGDi~P~t~~~r~~~~~~~l~G~~~~~~~~~~i~~~~~~~~ 124 (166)
T 3pjs_K 63 AQLITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGQE 124 (166)
T ss_dssp CCCCSTTTTTTTTHHHHSCCCCSSSCCCSSTTTTTTHHHHHHHHHHHHHHHTTSSSSSSSSH
T ss_pred cccCCHHHHHHHHHHHhccccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344568899999999998776 337999999999999999999999999999999998644
No 187
>2y7p_A LYSR-type regulatory protein; transcription regulator, DNA-binding, transcription, transcr factor, transcription regulation; HET: SAL PEU; 1.85A {Burkholderia SP} PDB: 2y7k_A* 2y84_A 2y7w_A 2y7r_A
Probab=91.49 E-value=2.3 Score=41.63 Aligned_cols=84 Identities=12% Similarity=0.153 Sum_probs=58.1
Q ss_pred CcceEEEecCcccccccEEeecCcceEEEEeHHHHHHHHHHCCCcccEEEEeCCCCCCCCCHHHHHHHHHcCcccEEEec
Q 002371 461 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGD 540 (930)
Q Consensus 461 g~~lrv~v~~~~~~~p~~~~~~~~~~~~G~~~dll~~l~~~ln~~~~~~~~~~~~~~~n~~~~~l~~~l~~g~~D~~~~~ 540 (930)
.++||||+.. .. ...+-..++..+.++.+ .++++... ++..+++.+|.+|++|++++.
T Consensus 7 ~g~l~Ig~~~--~~------------~~~~lp~~l~~f~~~~P-~v~l~l~~-------~~~~~l~~~L~~g~iDl~i~~ 64 (218)
T 2y7p_A 7 TRTFNLAMTD--IG------------EMYFMPPLMEALAQRAP-HIQISTLR-------PNAGNLKEDMESGAVDLALGL 64 (218)
T ss_dssp CCEEEEECCH--HH------------HHHHHHHHHHHHHHHCT-TCEEEEEC-------CCTTTHHHHHHHTSSCEEEEC
T ss_pred ceEEEEEecH--HH------------HHHHHHHHHHHHHHHCC-CCEEEEEe-------CCcccHHHHHhCCCceEEEec
Confidence 4678888863 11 12345678888888876 46666664 567889999999999999863
Q ss_pred EEEecCccceeeecccccccceEEEEeccC
Q 002371 541 IAIVTNRTKAVDFTQPYIESGLVVVAPVRK 570 (930)
Q Consensus 541 ~~~t~~R~~~vdfs~p~~~~~~~~~v~~~~ 570 (930)
. +.....+.+ .|+....++++++...
T Consensus 65 ~---~~~~~~l~~-~~l~~~~~~~v~~~~h 90 (218)
T 2y7p_A 65 L---PELQTGFFQ-RRLFRHRYVCMFRKDH 90 (218)
T ss_dssp C---TTCCTTEEE-EEEEEECEEEEEETTC
T ss_pred C---CCCCcceeE-EEeeeccEEEEEcCCC
Confidence 2 222223443 5788889999998766
No 188
>3gzg_A Molybdate-binding periplasmic protein; permease; molybdate complex, mutant K127S, metal binding protein; 1.55A {Xanthomonas axonopodis PV} PDB: 2h5y_A
Probab=91.45 E-value=1 Score=45.63 Aligned_cols=70 Identities=20% Similarity=0.124 Sum_probs=44.9
Q ss_pred HHHHHHHHHHCCCcccEEEEeCCCCCCCCCHHHHHHHHHcCc-ccEEEecEEEecCc---cceee--ecccccccceEEE
Q 002371 492 IDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGV-FDAAVGDIAIVTNR---TKAVD--FTQPYIESGLVVV 565 (930)
Q Consensus 492 ~dll~~l~~~ln~~~~~~~~~~~~~~~n~~~~~l~~~l~~g~-~D~~~~~~~~t~~R---~~~vd--fs~p~~~~~~~~~ 565 (930)
-++.+.+.++.|.++++.+ ++-..++.++.+|. +|+.++.-.-..++ ...++ -..+|....++++
T Consensus 38 ~~l~~~Fe~~~gi~V~~~~---------~~Sg~l~~qi~~g~~~DV~~sa~~~~~~~l~~~gl~~~~~~~~~a~~~lvl~ 108 (253)
T 3gzg_A 38 DEAATAYEKATGTPVRVSY---------AASSALARQIEQGAPADVFLSADLEWMDYLQQHGLVLPAQRHNLLGNTLVLV 108 (253)
T ss_dssp HHHHHHHHHHHSCCEEEEE---------ECHHHHHHHHHTTCCCSEEECSSHHHHHHHHHTTSSCGGGEEEEEEECEEEE
T ss_pred HHHHHHHHHHhCCeEEEEE---------CChHHHHHHHHcCCCceEEEECCHHHHHHHHHCCCcCCCcceeEEeeEEEEE
Confidence 4677888888887766654 44678889999887 99988732111111 11221 1245777788999
Q ss_pred EeccC
Q 002371 566 APVRK 570 (930)
Q Consensus 566 v~~~~ 570 (930)
+++..
T Consensus 109 ~~~~~ 113 (253)
T 3gzg_A 109 APASS 113 (253)
T ss_dssp EETTC
T ss_pred EECCC
Confidence 88765
No 189
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=91.41 E-value=0.32 Score=42.46 Aligned_cols=56 Identities=14% Similarity=0.335 Sum_probs=48.0
Q ss_pred cchhhHHHHHHHhhccc--cCCcccchhHHHHHHHHHHHHHhhhhhhhhhheeeeecc
Q 002371 619 QIVTVLWFSFSTMFFAH--RENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQ 674 (930)
Q Consensus 619 ~~~~~~~~~~~~l~~~~--~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~ 674 (930)
++.+++|+++.++...| .-.|.+..+|++.++|.++++.+.....+.+.+.++..+
T Consensus 49 ~~~~a~y~~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~~~~l~~~~~~~~ 106 (114)
T 2q67_A 49 RPIDALYFSVVTLTTVGAGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPS 106 (114)
T ss_dssp CHHHHHHHHHHHHTSCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--
T ss_pred CHHHHHHHHHHHhcceeCCCCccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999998776 337899999999999999999999999999998875543
No 190
>3r26_A Molybdate-binding periplasmic protein; protein binding; 1.70A {Escherichia coli} SCOP: c.94.1.1 PDB: 3axf_A 1amf_A 1wod_A
Probab=91.33 E-value=1.4 Score=44.09 Aligned_cols=114 Identities=11% Similarity=0.036 Sum_probs=63.2
Q ss_pred CCCChHHhhhCCCeEEEEeC------chhHHHHHHhcCCC---ccceEeCCCHHHHHHHHHcCCcEEEEccchhhHHHHh
Q 002371 678 PIKGIDTLMTSNDRVGYQVG------SFAENYLIEELSIP---KSRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLS 748 (930)
Q Consensus 678 ~i~sl~dL~~s~~~i~~~~~------s~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~ 748 (930)
.++++.+|.+ +.+|++.+. .+....|. ..+.. ..+++...+..+....+.+|++|+.+.....+..
T Consensus 106 ~~~~l~~l~~-~~~iai~~p~~~p~G~~a~~~l~-~~g~~~~l~~~~~~~~~~~~~~~~v~~Ge~d~gi~~~s~a~~--- 180 (237)
T 3r26_A 106 SKTNWTSLLN-GGRLAVGDPEHVPAGIYAKEALQ-KLGAWDTLSPKLAPAEDVRGALALVERNEAPLGIVYGSDAVA--- 180 (237)
T ss_dssp TTCCHHHHHT-TCCEEEECTTTCHHHHHHHHHHH-HTTCHHHHGGGEEEESSHHHHHHHHHTTSSSEEEEEHHHHHH---
T ss_pred chHhHHHhcC-CCeEEEeCCCCCChHHHHHHHHH-HcCCHHHhhhcEEecCCHHHHHHHHHcCCCCEEEEEeccccc---
Confidence 3466777764 457877643 34445553 33321 2356666788899999999999988875443321
Q ss_pred cCcceEE---eCCc-cccCccEEEecCCCcchhHHHHHHHhccccccHHHHHHhh
Q 002371 749 DHCQFSV---RGQE-FTKSGWGFAFPRDSPLAIDMSTAILTLSENGELQRIHDKW 799 (930)
Q Consensus 749 ~~~~l~~---~~~~-~~~~~~~~~~~k~spl~~~~n~~i~~l~e~G~~~~~~~~~ 799 (930)
..++.+ +++. .....+.+++.|+++- +.-..++.-|. +..-+.+..+|
T Consensus 181 -~~~~~~v~~~P~~~~~~~~~~~ai~k~~~~-~~A~~Fi~fl~-S~eaq~i~~~~ 232 (237)
T 3r26_A 181 -SKGVKVVATFPEDSHKKVEYPVAVVEGHNN-ATVKAFYDYLK-GPQAAEIFKRY 232 (237)
T ss_dssp -CSSEEEEEECCGGGSCCEEEEEEEBTTCCS-HHHHHHHHHHT-SHHHHHHHHHT
T ss_pred -CCCCeEEEECCcccCCeeeeeEEEEcCCCC-HHHHHHHHHHc-CHHHHHHHHHc
Confidence 223333 3332 2233456788888864 33334443333 33345555544
No 191
>2ql3_A Probable transcriptional regulator, LYSR family P; APC7314, rhodococcus RHA1, structural genomics, PSI-2; HET: MSE; 2.05A {Rhodococcus SP}
Probab=91.31 E-value=5.3 Score=38.23 Aligned_cols=84 Identities=17% Similarity=0.161 Sum_probs=56.2
Q ss_pred CcceEEEecCcccccccEEeecCcceEEEEeHHHHHHHHHHCCCcccEEEEeCCCCCCCCCHHHHHHHHHcCcccEEEec
Q 002371 461 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGD 540 (930)
Q Consensus 461 g~~lrv~v~~~~~~~p~~~~~~~~~~~~G~~~dll~~l~~~ln~~~~~~~~~~~~~~~n~~~~~l~~~l~~g~~D~~~~~ 540 (930)
..+||||+.. ... ..+-.+++..+.++.+ .++++... ++..++..+|.+|++|+++..
T Consensus 4 ~g~l~Ig~~~--~~~------------~~~l~~~l~~f~~~~P-~i~i~l~~-------~~~~~l~~~l~~g~~Dl~i~~ 61 (209)
T 2ql3_A 4 AGPIAVGCYP--ALG------------PTILPSMLYAFTAEYP-RASVEFRE-------DTQNRLRTQLEGGELDVAIVY 61 (209)
T ss_dssp CEEEEEEECG--GGT------------TTTHHHHHHHHHHHCT-TEEEEEEE-------CCHHHHHHHHHTTSCSEEEEE
T ss_pred ceeEEEeech--hhh------------hhhHHHHHHHHHHHCC-CceEEEEE-------CcHHHHHHHHHcCCccEEEEe
Confidence 3578998875 111 1344678888888886 46666665 568899999999999999853
Q ss_pred EEEecCccceeeecccccccceEEEEeccC
Q 002371 541 IAIVTNRTKAVDFTQPYIESGLVVVAPVRK 570 (930)
Q Consensus 541 ~~~t~~R~~~vdfs~p~~~~~~~~~v~~~~ 570 (930)
. ......+. +.++....++++++...
T Consensus 62 ~---~~~~~~l~-~~~l~~~~~~~v~~~~h 87 (209)
T 2ql3_A 62 D---LDLSPEWQ-TVPLMTREPMVVLGAEH 87 (209)
T ss_dssp S---SSCCTTEE-EEEEEEECCEEEEETTC
T ss_pred c---CCCCCCce-EEEeecCceEEEEeCCC
Confidence 2 11112232 35677788888887654
No 192
>3fxq_A LYSR type regulator of TSAMBCD; transcriptional regulator, LTTR, TSAR, WHTH, DNA- transcription, transcription regulation; 1.85A {Comamonas testosteroni} PDB: 3fxr_A* 3fxu_A* 3fzj_A 3n6t_A 3n6u_A*
Probab=91.25 E-value=2.2 Score=44.36 Aligned_cols=85 Identities=15% Similarity=0.158 Sum_probs=56.1
Q ss_pred cceEEEecCcccccccEEeecCcceEEEEeHHHHHHHHHHCCCcccEEEEeCCCCCCCCCHHHHHHHHHcCcccEEEecE
Q 002371 462 RQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGDI 541 (930)
Q Consensus 462 ~~lrv~v~~~~~~~p~~~~~~~~~~~~G~~~dll~~l~~~ln~~~~~~~~~~~~~~~n~~~~~l~~~l~~g~~D~~~~~~ 541 (930)
.+||||+.. .+. ..+...++..+.++.+ .++++... ++.++++..|.+|++|+++...
T Consensus 92 g~l~I~~~~--~~~------------~~~l~~~l~~f~~~~P-~i~i~l~~-------~~~~~~~~~l~~g~~Dlai~~~ 149 (305)
T 3fxq_A 92 GHITFAASP--AIA------------LAALPLALASFAREFP-DVTVNVRD-------GMYPAVSPQLRDGTLDFALTAA 149 (305)
T ss_dssp TEEEEEECH--HHH------------HTHHHHHHHHHHHHCT-TCEEEEEE-------CCTTTTHHHHHHTSSSEEEEEC
T ss_pred ceEEEEech--HHH------------HHHHHHHHHHHHHHCC-CCEEEEEE-------CCHHHHHHHHHcCCCCEEEecC
Confidence 579999874 111 2345677888888876 35666665 4567889999999999998632
Q ss_pred EEecCccceeeecccccccceEEEEeccC
Q 002371 542 AIVTNRTKAVDFTQPYIESGLVVVAPVRK 570 (930)
Q Consensus 542 ~~t~~R~~~vdfs~p~~~~~~~~~v~~~~ 570 (930)
.... ....+ -..++....++++++...
T Consensus 150 ~~~~-~~~~l-~~~~L~~~~~~~v~~~~h 176 (305)
T 3fxq_A 150 HKHD-IDTDL-EAQPLYVSDVVIVGQRQH 176 (305)
T ss_dssp CGGG-SCTTE-EEEEEEECCEEEEEETTC
T ss_pred CCCC-CccCe-eEEEeecCcEEEEEcCCC
Confidence 2111 01122 246777888899888665
No 193
>1sw5_A Osmoprotection protein (PROX); binding-protein, compatible solutes, cation-PI interactions, classical hydrogen bonds, protein binding; 1.80A {Archaeoglobus fulgidus} SCOP: c.94.1.1 PDB: 1sw4_A 1sw1_A 1sw2_A 3mam_A*
Probab=91.24 E-value=0.62 Score=48.05 Aligned_cols=104 Identities=8% Similarity=-0.004 Sum_probs=58.2
Q ss_pred CCCChHHhhhCC--CeEEEEeCch-----hHHHHHHhcCCCccceEeCCCHHHHHHHHHcCCcEEEEccchhhHHHHhcC
Q 002371 678 PIKGIDTLMTSN--DRVGYQVGSF-----AENYLIEELSIPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSDH 750 (930)
Q Consensus 678 ~i~sl~dL~~s~--~~i~~~~~s~-----~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~ 750 (930)
.|+|++||.... ..+|...+.. ...++ +.+++....+... +..+...++.+|++|++....+....- +
T Consensus 124 ~i~si~DL~g~~~~~~~g~~~~~~~~~~g~~~~~-~~yGl~~~~~~~~-~~~~~~~Al~~g~vd~~~~~~p~~~~~--~- 198 (275)
T 1sw5_A 124 GVEKISDLAEFADQLVFGSDPEFASRPDGLPQIK-KVYGFEFKEVKQM-EPTLMYEAIKNKQVDVIPAYTTDSRVD--L- 198 (275)
T ss_dssp TCCBGGGGTTTGGGCEEEECHHHHHSTTSHHHHH-HHHTCCCSEEEEC-CGGGHHHHHHTTSCSEEEEETTCHHHH--H-
T ss_pred CCCcHHHHHhhhcceEeccCcccccccchHHHHH-HhcCCCcccccCC-CHHHHHHHHHcCCCeEEEEeCCCcchh--c-
Confidence 799999997331 1444332211 11133 5566655555555 567889999999999999877765532 2
Q ss_pred cceEEeCCc---cccCccEEEecCCCcchhHHHHHHHhc
Q 002371 751 CQFSVRGQE---FTKSGWGFAFPRDSPLAIDMSTAILTL 786 (930)
Q Consensus 751 ~~l~~~~~~---~~~~~~~~~~~k~spl~~~~n~~i~~l 786 (930)
.+++++..+ +..+....+++++..=.+.+-..+.++
T Consensus 199 ~~l~~L~d~~~~~~~~~~~~v~~~~~~~~P~~~~~l~~l 237 (275)
T 1sw5_A 199 FNLKILEDDKGALPPYDAIIIVNGNTAKDEKLISVLKLL 237 (275)
T ss_dssp TTEEECBCTTCCSCCCEEEEEECTTGGGCHHHHHHHHTT
T ss_pred CCeEEccCCcccCCccceeeeeehhhccChHHHHHHHHH
Confidence 246666432 223334556666532003344455444
No 194
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*
Probab=91.03 E-value=0.35 Score=50.30 Aligned_cols=61 Identities=10% Similarity=0.077 Sum_probs=52.0
Q ss_pred CCCcccchhhHHHHHHHhhcccc--CCcccchhHHHHHHHHHHHHHhhhhhhhhhheeeeecc
Q 002371 614 GPPRKQIVTVLWFSFSTMFFAHR--ENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQ 674 (930)
Q Consensus 614 ~~~~~~~~~~~~~~~~~l~~~~~--~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~ 674 (930)
+.....+.+++||++.++..-|. -.|.+..+|++.+++.++++++.+..++.+.+.++.+.
T Consensus 77 ~~~~~s~~~a~yfs~vT~tTvGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~v~~~~~~~~ 139 (301)
T 1xl4_A 77 NARPGSFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYARFTRPT 139 (301)
T ss_dssp TSCTTCHHHHHHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred CCCcCCHHHHHHHhhhheeccCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 34456789999999999987763 37899999999999999999999999999999887654
No 195
>1al3_A Cys regulon transcriptional activator CYSB; LYSR family, cysteine biosynthesis, transcription regulation; 1.80A {Klebsiella aerogenes} SCOP: c.94.1.1
Probab=91.02 E-value=7.9 Score=40.44 Aligned_cols=205 Identities=12% Similarity=0.077 Sum_probs=120.1
Q ss_pred cceEEEecCcccccccEEeecCcceEEEEeHHHHHHHHHHCCCcccEEEEeCCCCCCCCCHHHHHHHHHcCcccEEEecE
Q 002371 462 RQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGDI 541 (930)
Q Consensus 462 ~~lrv~v~~~~~~~p~~~~~~~~~~~~G~~~dll~~l~~~ln~~~~~~~~~~~~~~~n~~~~~l~~~l~~g~~D~~~~~~ 541 (930)
.+||||+.. .+. ..+...++..+.++.+ .+++.... ++..+++..|.+|++|+++...
T Consensus 93 g~l~I~~~~--~~~------------~~~l~~~l~~f~~~~P-~v~i~l~~-------~~~~~~~~~l~~g~~Dlai~~~ 150 (324)
T 1al3_A 93 GSLYVATTH--TQA------------RYALPGVIKGFIERYP-RVSLHMHQ-------GSPTQIAEAVSKGNADFAIATE 150 (324)
T ss_dssp EEEEEEECH--HHH------------HHTSHHHHHHHHHHCT-EEEEEEEE-------CCHHHHHHHHHTTCCSEEEESS
T ss_pred CeEEEEech--hhh------------hhHHHHHHHHHHHHCC-CCEEEEEE-------CCHHHHHHHHHCCCceEEEEec
Confidence 579999874 111 2344678888888876 35566655 5678999999999999998632
Q ss_pred EEecCccceeeecccccccceEEEEeccCCCcCcceecccCchhHHHHHHHHHHHHHHhhhheeeccCCCCCCCCcccch
Q 002371 542 AIVTNRTKAVDFTQPYIESGLVVVAPVRKLNSSAWAFLRPFTPLMWAVTGVFFLVVGTVVWILEHRLNDEFRGPPRKQIV 621 (930)
Q Consensus 542 ~~t~~R~~~vdfs~p~~~~~~~~~v~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (930)
.. .....+. +.++....++++++...+..
T Consensus 151 ~~--~~~~~l~-~~~L~~~~~~~v~~~~~pl~------------------------------------------------ 179 (324)
T 1al3_A 151 AL--HLYDDLV-MLPCYHWNRSIVVTPEHPLA------------------------------------------------ 179 (324)
T ss_dssp CC--CTTSCEE-EEEEEEECEEEEECTTSTTT------------------------------------------------
T ss_pred CC--CCCCCee-EEEecCCceEEEEcCCCccc------------------------------------------------
Confidence 21 1112222 35667778888887655211
Q ss_pred hhHHHHHHHhhccccCCcccchhHHHHHHHHHHHHHhhhhhhhhhheeeeeccccCCCCChHHhhhCCCeEE-EEeCchh
Q 002371 622 TVLWFSFSTMFFAHRENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIDTLMTSNDRVG-YQVGSFA 700 (930)
Q Consensus 622 ~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~s~~~i~-~~~~s~~ 700 (930)
....-+++||. +.++. +..+...
T Consensus 180 ------------------------------------------------------~~~~~~~~dL~--~~~~i~~~~~~~~ 203 (324)
T 1al3_A 180 ------------------------------------------------------TKGSVSIEELA--QYPLVTYTFGFTG 203 (324)
T ss_dssp ------------------------------------------------------TTSCCCHHHHH--TSEEEEECTTSTT
T ss_pred ------------------------------------------------------cCCCCCHHHHh--CCCeEEecCCCcH
Confidence 02345789997 45543 3333322
Q ss_pred ----HHHHHHhcCCCccceEeCCCHHHHHHHHHcCCcEEEEccchhhHHHHhcCcceEEe--CCccccCccEEEecCCCc
Q 002371 701 ----ENYLIEELSIPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSDHCQFSVR--GQEFTKSGWGFAFPRDSP 774 (930)
Q Consensus 701 ----~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~k~sp 774 (930)
..++. ..+.........++.+.....+..|.--+++..... .... ..++..+ ........++++.+++.+
T Consensus 204 ~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~lv~~G~Giailp~~~~-~~~~--~~~L~~~~~~~~~~~~~~~l~~~~~~~ 279 (324)
T 1al3_A 204 RSELDTAFN-RAGLTPRIVFTATDADVIKTYVRLGLGVGVIASMAV-DPVS--DPDLVKLDANGIFSHSTTKIGFRRSTF 279 (324)
T ss_dssp HHHHHHHHH-HHTCCCEEEEEESSHHHHHHHHHHTSCEEEEEGGGC-CTTT--CTTSEEEECBTTBCCEEEEEEEETTCC
T ss_pred HHHHHHHHH-HcCCCCceEEEeCCHHHHHHHHHhCCCeEEechhhh-hhhc--cCCeEEEECCCCCcceEEEEEEeCCCC
Confidence 23342 334444445667889999999998776666654322 2211 2334444 323334457788888877
Q ss_pred chhHHHHHHHhccccccHHHHHHhhc
Q 002371 775 LAIDMSTAILTLSENGELQRIHDKWL 800 (930)
Q Consensus 775 l~~~~n~~i~~l~e~G~~~~~~~~~~ 800 (930)
....+...+..+.+.- -+.+.++++
T Consensus 280 ~~~~~~~fi~~l~~~~-~~~~~~~~~ 304 (324)
T 1al3_A 280 LRSYMYDFIQRFAPHL-TRDVVDTAV 304 (324)
T ss_dssp CCHHHHHHHHHHCTTC-CHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh-ccchhhhhh
Confidence 6666666666555432 233444443
No 196
>4esw_A Pyrimidine biosynthesis enzyme THI13; thiamin pyrimidine biosynthesis, transferase; HET: CIT; 1.60A {Candida albicans} PDB: 4esx_A*
Probab=90.85 E-value=0.74 Score=49.21 Aligned_cols=67 Identities=15% Similarity=0.195 Sum_probs=43.2
Q ss_pred CCCCChHHhhhCCCeEEEEeCchhHHHH---HHhcCCCccceEeCCCHHHHHHHHHcCCcEEEEccchhhHHH
Q 002371 677 SPIKGIDTLMTSNDRVGYQVGSFAENYL---IEELSIPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLF 746 (930)
Q Consensus 677 ~~i~sl~dL~~s~~~i~~~~~s~~~~~l---~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~ 746 (930)
+.+++++||. |++||+. ++....++ .+..++....+...+...+...++.+|.+||.+...++....
T Consensus 101 ~~~~~~~dLk--GK~ig~~-~~~~~~~l~~~L~~~Gl~~~dv~~v~~~~~~~~al~~G~vDa~~~~~p~~~~~ 170 (342)
T 4esw_A 101 GITSDFQSLK--GKRIGYV-GEFGKIQVDELTKHYGMTPDDYVAVRCGMNVAKYILEGTIDCGIGIECIQQVE 170 (342)
T ss_dssp SCCSSGGGGT--TCEEEES-SSHHHHHHHHHHGGGTCCGGGSEEEECGGGHHHHHHHTSSSEEEEETTTHHHH
T ss_pred cccCCHHHhC--CCEEEec-CCchHHHHHHHHHHcCCChhheEEecCCHHHHHHHHcCCCCEEEEeccchHHH
Confidence 5677899996 9999985 44333332 234455555444443344566789999999998876665443
No 197
>2i49_A Bicarbonate transporter; alpha-beta protein, C-clamp, ABC transporter, periplasmic SO binding protein, bicarbonate-binding protein; 1.35A {Synechocystis SP} PDB: 2i48_A 2i4b_A 2i4c_A
Probab=90.74 E-value=0.81 Score=50.58 Aligned_cols=90 Identities=14% Similarity=0.184 Sum_probs=54.6
Q ss_pred hHHh-hhCCC--eEEEE-eCchhHHHH---HHhcCCCc---cceEeCCCHHHHHHHHHcCCcEEEEccchhhHHHHhcCc
Q 002371 682 IDTL-MTSND--RVGYQ-VGSFAENYL---IEELSIPK---SRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSDHC 751 (930)
Q Consensus 682 l~dL-~~s~~--~i~~~-~~s~~~~~l---~~~~~~~~---~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~~ 751 (930)
++|| .+.|+ +||+. .++....++ ....++.. -+++.+ ...+...+|.+|.+||++...++......+..
T Consensus 153 i~dL~k~~GK~~~Iav~~~gs~~~~~l~~~L~~~Gl~p~~DV~~v~~-~~~~~~~aL~~G~iDa~~~~eP~~~~a~~~g~ 231 (429)
T 2i49_A 153 IKGFNKTNGRKFKAAHTFPNVNQDFWIRYWFAAGGVDPDTDIDLLAV-PPAETVQGMRNGTMDAFSTGDPWPYRIVTENI 231 (429)
T ss_dssp HHTHHHHHSSCCEEEESSTTSHHHHHHHHHHHHTTCCTTTTSEEEEC-CHHHHHHHHHHTCCCEEEEETTHHHHHHHTTS
T ss_pred HHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHhcCCCCCCcEEEEEC-ChHHHHHHHHcCCccEEEeccchHHHHHHCCC
Confidence 6888 65577 89997 566443322 13345543 345555 67889999999999999988887766555433
Q ss_pred ceEEe--CCccccC-ccEEEecCC
Q 002371 752 QFSVR--GQEFTKS-GWGFAFPRD 772 (930)
Q Consensus 752 ~l~~~--~~~~~~~-~~~~~~~k~ 772 (930)
...+. ++..... ...++++++
T Consensus 232 g~~~~~~~~~~~~~~~~vl~~~~~ 255 (429)
T 2i49_A 232 GYMAGLTAQIWPYHPEEYLAIRAD 255 (429)
T ss_dssp CEEEEEHHHHSTTCCCCEEEEEHH
T ss_pred CEEEEechHhcCCCceEEEEECHH
Confidence 22222 2222222 245666654
No 198
>2pfz_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.80A {Bordetella pertussis tohama I}
Probab=90.28 E-value=1.7 Score=45.33 Aligned_cols=57 Identities=12% Similarity=0.135 Sum_probs=41.9
Q ss_pred CCCCChHHhhhCCCeEEEEeCchhHHHHHHhcCCCccceEeCCCHHHHHHHHHcCCcEEEEccch
Q 002371 677 SPIKGIDTLMTSNDRVGYQVGSFAENYLIEELSIPKSRLVALGSPEEYAIALENRTVAAVVDERP 741 (930)
Q Consensus 677 ~~i~sl~dL~~s~~~i~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~ 741 (930)
.+|++++||. |++|.+. ++.....+ +.++. ..++. ...|...+|++|.+|+......
T Consensus 128 ~pI~s~~Dlk--G~KiR~~-~~~~~~~~-~~lGa---~pv~~-~~~E~y~ALq~G~vDg~~~~~~ 184 (301)
T 2pfz_A 128 RDIKQVSDMK--GLKWRAY-SPVTAKIA-ELVGA---QPVTV-QQAELAQAMATGVIDSYMSSGS 184 (301)
T ss_dssp SCCSSGGGGT--TCEEEES-SHHHHHHH-HHHTC---EEEEC-CGGGHHHHHHTTSCSEEEECHH
T ss_pred CCCCChHHhc--CCEEecC-ChhHHHHH-HHcCC---cceec-CHHHHHHHHhcCeeeEEecCcc
Confidence 6899999996 9999886 65545555 45553 33333 6788999999999999965433
No 199
>2dgd_A 223AA long hypothetical arylmalonate decarboxylas; octamer, alpha/beta structure, lyase; 2.90A {Sulfolobus tokodaii}
Probab=90.24 E-value=1.9 Score=42.66 Aligned_cols=81 Identities=5% Similarity=-0.103 Sum_probs=55.4
Q ss_pred HHHHHHHHHHcCCcEEEEEEecCCcCcchHHHHHHHHHhcCcEEEEEEecCCCC-----CCChhHHHHHHHHHhcC--Cc
Q 002371 147 MSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQ-----SVTETDVRNELVKVRMM--EA 219 (930)
Q Consensus 147 ~~ai~~~l~~~~w~~vaii~~d~~~g~~~~~~~~~~l~~~g~~i~~~~~~~~~~-----~~~~~d~~~~l~~l~~~--~~ 219 (930)
..++++.++..|.++|+++. .|+....+.+.+.+++.|+++.......... ......+...+.++... ++
T Consensus 96 ~~a~~~a~~~~g~~rvgvlt---~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ga 172 (223)
T 2dgd_A 96 EESVYELLKKLNVRKLWIGT---PYIKERTLEEVEWWRNKGFEIVGYDGLGKIRGIDISNTPIFTIYRLVKRHLNEVLKA 172 (223)
T ss_dssp HHHHHHHHHHTTCCEEEEEE---SSCHHHHHHHHHHHHTTTCEEEEEEECCCCSHHHHHTCCHHHHHHHHHTTHHHHTTS
T ss_pred HHHHHHHHHHcCCCeEEEEe---CCchHHHHHHHHHHHhCCcEEecccCCCCCCcchhhccCHHHHHHHHHHHhcccCCC
Confidence 45666667778889999996 5666667788899999999986554433210 01234566666666666 78
Q ss_pred eEEEEEcchhh
Q 002371 220 RVIVVHGYSRT 230 (930)
Q Consensus 220 ~viv~~~~~~~ 230 (930)
|+||+.|..-.
T Consensus 173 daIvLgCT~l~ 183 (223)
T 2dgd_A 173 DAVYIACTALS 183 (223)
T ss_dssp SEEEECCTTSC
T ss_pred CEEEEeCCccc
Confidence 88888766543
No 200
>3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, adenine; HET: ADE; 2.05A {Brucella melitensis biovar abortus}
Probab=90.04 E-value=2.5 Score=45.14 Aligned_cols=91 Identities=9% Similarity=-0.022 Sum_probs=70.7
Q ss_pred eEEEeEEeecCCCcchHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccCChhhHH
Q 002371 26 VLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVMAH 105 (930)
Q Consensus 26 ~I~IG~~~~l~~~~G~~~~~a~~lAve~iN~~ggil~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~S~~~~ 105 (930)
.=+||.+.....+.-.....|+..+++++| +..++.+.+..+-.|+..+.+++..|+++++++|+....+.
T Consensus 149 ~~kIGfVgg~~~p~v~~~~~GF~~G~k~~n------p~i~v~~~~~g~~~d~~kg~~~a~~l~~~G~DvIf~~~d~~--- 219 (356)
T 3s99_A 149 KGIAGYIGSVPVPEVVQGINSFMLGAQSVN------PDFRVKVIWVNSWFDPGKEADAAKALIDQGVDIITQHTDST--- 219 (356)
T ss_dssp SCEEEEEECCCCHHHHHHHHHHHHHHHTTC------TTCEEEEEECSSSCCHHHHHHHHHHHHHTTCSEEEESSSSS---
T ss_pred CCEEEEECCCccHHHHHHHHHHHHHHHHHC------CCCEEEEEECCCCCChHHHHHHHHHHHhCCCcEEEECCCch---
Confidence 347899988765444456889999999876 45677777776667999999999999999999998765553
Q ss_pred HHHHhhhcCCCcEEEeecCC
Q 002371 106 VLSHLANELQVPLLSFTALD 125 (930)
Q Consensus 106 av~~~~~~~~vp~is~~a~~ 125 (930)
.+...+.+.++..|.+....
T Consensus 220 Gv~~aa~e~Gv~vIG~D~dq 239 (356)
T 3s99_A 220 AAIQVAHDRGIKAFGQASDM 239 (356)
T ss_dssp HHHHHHHHTTCEEEEEESCC
T ss_pred HHHHHHHHcCCEEEEEcCch
Confidence 45677788899999876553
No 201
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=89.85 E-value=0.45 Score=47.32 Aligned_cols=73 Identities=12% Similarity=0.215 Sum_probs=57.1
Q ss_pred HHHHhhhheeeccCCCCCCCCcccchhhHHHHHHHhhccc--cCCcccchhHHHHHHHHHHHHHhhhhhhhhhheeeee
Q 002371 596 VVGTVVWILEHRLNDEFRGPPRKQIVTVLWFSFSTMFFAH--RENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTV 672 (930)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~ 672 (930)
+.+++.+.+|+.. .++...++.+++|+++.++..-| .-.|.+..+|++.+++.++++.+.+...+.+++.++.
T Consensus 146 ~~~~~~~~~e~~~----~~~~~~~~~~s~y~~~~t~tTvGyGdi~P~t~~~~~~~~~~~~~G~~~~~~~i~~i~~~~~~ 220 (223)
T 1orq_C 146 YGAFAIYIVEYPD----PNSSIKSVFDALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGISALTLLIGTVSNMFQK 220 (223)
T ss_dssp HHHHHHHHTTSSS----TTCSCCSHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC----cCCCcCcchhHHHhHHhHHhccCCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666532 22334578999999999998776 3379999999999999999999999999999887764
No 202
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=89.60 E-value=0.7 Score=42.50 Aligned_cols=55 Identities=16% Similarity=0.330 Sum_probs=47.8
Q ss_pred cchhhHHHHHHHhhcccc--CCcccchhHHHHHHHHHHHHHhhhhhhhhhheeeeec
Q 002371 619 QIVTVLWFSFSTMFFAHR--ENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQ 673 (930)
Q Consensus 619 ~~~~~~~~~~~~l~~~~~--~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~ 673 (930)
.+.+++||++.++...|- -.|.+..+|++.++|.++++.+.+...+.+.+.+..+
T Consensus 52 ~~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 108 (148)
T 3vou_A 52 RPLDALYFSVVTLTTVGDGNFSPQTDFGKVFTILYIFIGIGLVFGFIHKLAVNVQLP 108 (148)
T ss_dssp CHHHHHHHHHHHHTTCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
T ss_pred CHHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 588999999999987763 3788999999999999999999999999988776543
No 203
>2hzl_A Trap-T family sorbitol/mannitol transporter, periplasmic binding protein, SMOM; trap transporter, periplasmic subunit, ligand binding; 1.40A {Rhodobacter sphaeroides 2} PDB: 2hzk_A
Probab=89.50 E-value=1.2 Score=48.12 Aligned_cols=87 Identities=18% Similarity=0.160 Sum_probs=52.7
Q ss_pred CCCCChHHhhhCCCeEEEEeCchhHHHHHHhcCCCccceEeCCCHHHHHHHHHcCCcEEEEccchhhHHH--HhcCcceE
Q 002371 677 SPIKGIDTLMTSNDRVGYQVGSFAENYLIEELSIPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLF--LSDHCQFS 754 (930)
Q Consensus 677 ~~i~sl~dL~~s~~~i~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~--~~~~~~l~ 754 (930)
.+|++++||. |++|.+. + .....+ +.++.. .++. ...|...+|++|.+|+.....+...+- ..+-.++.
T Consensus 163 ~pI~s~~DLk--G~KiR~~-~-~~~~~~-~~lGa~---pv~~-~~~e~y~ALq~G~VDg~~~~~p~~~~~~~~~ev~k~~ 233 (365)
T 2hzl_A 163 REINTVADMQ--GLKMRVG-G-FAGKVM-ERLGVV---PQQI-AGGDIYPALEKGTIDATEWVGPYDDEKLGFFKVAPYY 233 (365)
T ss_dssp SCCCSTGGGT--TCEEECC-T-THHHHH-HTTTCE---EECC-CTTSHHHHHHHTSCSEECCSCHHHHHHHTGGGTCCEE
T ss_pred CCCCChHHhC--CCEEecC-C-cHHHHH-HHcCCc---ceec-CHHHHHHHHhCCCcceeeccCccchhhcChHHhhhee
Confidence 6899999996 9999887 5 344555 455532 2222 556788999999999988655554321 12223444
Q ss_pred EeCC-ccccCccEEEecCC
Q 002371 755 VRGQ-EFTKSGWGFAFPRD 772 (930)
Q Consensus 755 ~~~~-~~~~~~~~~~~~k~ 772 (930)
.... ........+++.++
T Consensus 234 ~~~~~~~~~~~~~~v~n~~ 252 (365)
T 2hzl_A 234 YYPGWWEGGPTVHFMFNKS 252 (365)
T ss_dssp EECBTTCSSCEEEEEEEHH
T ss_pred eccCccccccceEEEEcHH
Confidence 4333 22223345667765
No 204
>1i6a_A OXYR, hydrogen peroxide-inducible genes activator; OXYR regulatory domain, oxidized form, transcription; 2.30A {Escherichia coli} SCOP: c.94.1.1 PDB: 1i69_A
Probab=89.42 E-value=0.61 Score=45.79 Aligned_cols=84 Identities=13% Similarity=0.189 Sum_probs=57.6
Q ss_pred CcceEEEecCcccccccEEeecCcceEEEEeHHHHHHHHHHCCCcccEEEEeCCCCCCCCCHHHHHHHHHcCcccEEEec
Q 002371 461 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGD 540 (930)
Q Consensus 461 g~~lrv~v~~~~~~~p~~~~~~~~~~~~G~~~dll~~l~~~ln~~~~~~~~~~~~~~~n~~~~~l~~~l~~g~~D~~~~~ 540 (930)
..+||||+.. .. ...+-.+++..+.++.+ .++++... ++..+++.+|.+|++|+++..
T Consensus 4 ~g~lrIg~~~--~~------------~~~~l~~~l~~f~~~~P-~v~l~l~~-------~~~~~~~~~l~~g~~Dl~i~~ 61 (219)
T 1i6a_A 4 SGPLHIGLIP--TV------------GPYLLPHIIPMLHQTFP-KLEMYLHE-------AQTHQLLAQLDSGKLDAVILA 61 (219)
T ss_dssp CEEEEEEECT--TT------------HHHHHHHHHHHHHHHCT-TEEEEEEE-------CCHHHHHHHHHHTSCSEEEEE
T ss_pred ceEEEEEecc--ch------------hhhhhhHHHHHHHHHCC-CeEEEEEE-------CChHHHHHHHHcCCeeEEEec
Confidence 3578998874 11 12345678888888886 46676665 568899999999999999863
Q ss_pred EEEecCccceeeecccccccceEEEEeccC
Q 002371 541 IAIVTNRTKAVDFTQPYIESGLVVVAPVRK 570 (930)
Q Consensus 541 ~~~t~~R~~~vdfs~p~~~~~~~~~v~~~~ 570 (930)
. +.....+. +.|+....++++++...
T Consensus 62 ~---~~~~~~l~-~~~l~~~~~~~v~~~~h 87 (219)
T 1i6a_A 62 L---VKESEAFI-EVPLFDEPMLLAIYEDH 87 (219)
T ss_dssp C---CGGGTTSE-EEEEEEEEEEEEEETTS
T ss_pred C---CCCCCCcc-eeeeecccEEEEEcCCC
Confidence 2 11112233 35777888899888765
No 205
>2pfy_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.95A {Bordetella pertussis tohama I}
Probab=89.36 E-value=1.6 Score=45.66 Aligned_cols=57 Identities=11% Similarity=0.156 Sum_probs=41.8
Q ss_pred CCCCChHHhhhCCCeEEEEeCchhHHHHHHhcCCCccceEeCCCHHHHHHHHHcCCcEEEEccch
Q 002371 677 SPIKGIDTLMTSNDRVGYQVGSFAENYLIEELSIPKSRLVALGSPEEYAIALENRTVAAVVDERP 741 (930)
Q Consensus 677 ~~i~sl~dL~~s~~~i~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~ 741 (930)
.+|++++||. |++|.+. ++.....+ +.++. ..++. ...|...+|++|.+|+......
T Consensus 129 ~pI~s~~Dlk--G~KiR~~-~~~~~~~~-~~lGa---~pv~~-~~~E~y~ALq~G~vDg~~~~~~ 185 (301)
T 2pfy_A 129 KPVAALADLK--GTRFRAY-SASTSHMA-ALMGA---VPTTV-QTPEVPQAFSTGVIDAMLTSPA 185 (301)
T ss_dssp SCCSSGGGGT--TCEEEEC-SHHHHHHH-HHTTS---EEEEC-CGGGHHHHHHTTSCSBEEECHH
T ss_pred CCCCCHHHhC--CCEEeec-ChhHHHHH-HHcCC---cceec-cHHHHHHHHhcceeeeEecCcc
Confidence 6899999996 9999887 65545555 45543 33443 6788999999999999965433
No 206
>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A*
Probab=89.07 E-value=6.4 Score=41.27 Aligned_cols=126 Identities=8% Similarity=-0.016 Sum_probs=80.7
Q ss_pred EEeEEeecCCCcchHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccCChhhHHHH
Q 002371 28 NVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVMAHVL 107 (930)
Q Consensus 28 ~IG~~~~l~~~~G~~~~~a~~lAve~iN~~ggil~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~S~~~~av 107 (930)
+||.+.............|++.++++.| +..++.+++..+-.++..+.+++.+|+++++.+|+..... .+..+
T Consensus 131 ~Ig~i~g~~~~~~~~r~~Gf~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~~a~~ll~~~~daI~~~~d~-~a~Gv 203 (318)
T 2fqx_A 131 AVGFIVGMELGMMPLFEAGFEAGVKAVD------PDIQVVVEVANTFSDPQKGQALAAKLYDSGVNVIFQVAGG-TGNGV 203 (318)
T ss_dssp EEEEEESCCSTTTHHHHHHHHHHHHHHC------TTCEEEEEECSCSSCHHHHHHHHHHHHHTTCCEEEEECGG-GHHHH
T ss_pred EEEEEeCcccHHHHHHHHHHHHHHHHHC------CCCEEEEEEccCccCHHHHHHHHHHHHHCCCcEEEECCCC-CchHH
Confidence 7898876654445667899999999876 2345555554444578889999999999999999875443 34444
Q ss_pred HHhhhc-----CCCcEEEeecCCCCCCCC---CCCeEEEccCChHHHHHHHHHHHHHcCCc
Q 002371 108 SHLANE-----LQVPLLSFTALDPTLSPL---QYPFFVQTAPNDLYLMSAIAEMVSYFGWG 160 (930)
Q Consensus 108 ~~~~~~-----~~vp~is~~a~~~~ls~~---~~~~~fr~~p~~~~~~~ai~~~l~~~~w~ 160 (930)
...+.+ .++-+|.+.........- ..|.+-.+..+-...+...++.+..-.|+
T Consensus 204 ~~a~~e~g~~P~dv~viG~D~~~~~~~~~~~~~~~~LTsv~~~~~~~~~~a~~~~~~g~~~ 264 (318)
T 2fqx_A 204 IKEARDRRLNGQDVWVIGVDRDQYMDGVYDGSKSVVLTSMVKRADVAAERISKMAYDGSFP 264 (318)
T ss_dssp HHHHHHHHHTTCCCEEEEEESCCGGGGBCSSSCBSEEEEEEECHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHhhhhccCCcEEEEEecchhhhccccCCCCeEEEEEEEEHHHHHHHHHHHHHcCCCC
Confidence 455555 678899886633211100 23445555555555666666666554453
No 207
>2eq5_A 228AA long hypothetical hydantoin racemase; structural genomics, NPPSFA, national project on P structural and functional analyses; 2.20A {Pyrococcus horikoshii}
Probab=87.37 E-value=3.4 Score=40.94 Aligned_cols=116 Identities=13% Similarity=0.105 Sum_probs=67.4
Q ss_pred HHHHHHhcCcEEEEccCChhhHHHHHHhhhcCCCcEEEeecCCCCCCCCCCCeEEEccCChHHHHHHHHHHHHHcCCcEE
Q 002371 83 GALQFMETDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEV 162 (930)
Q Consensus 83 ~a~~li~~~v~aiiGp~~S~~~~av~~~~~~~~vp~is~~a~~~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~~~w~~v 162 (930)
.+..|.+.++++|+-+-++. .++..+-+..++|+++. .++.++.....| ++|
T Consensus 67 ~~~~l~~~g~d~iviaCnta--~~~~~l~~~~~iPvi~i-------------------------~~~~~~~a~~~~-~ri 118 (228)
T 2eq5_A 67 LAKEFEREGVDAIIISCAAD--PAVEKVRKLLSIPVIGA-------------------------GSSVSALALAYG-RRV 118 (228)
T ss_dssp HHHHHHHTTCSEEEECSTTC--TTHHHHHHHCSSCEEEH-------------------------HHHHHHHHHTTC-SSE
T ss_pred HHHHHHHCCCCEEEEeCCch--HHHHHHHHhCCCCEeCc-------------------------cHHHHHHHHHhC-CeE
Confidence 34455556899998766655 55556667778998863 122222223456 899
Q ss_pred EEEEecCCcCcchHHHHHHHH-HhcCcEEEEEEe--c-CCCCCCChhHHHHHHHHHhcCCceEEEEEcchhh
Q 002371 163 IAIFNDDDQGRNGVTALGDKL-AEIRCKISYKSA--L-PPDQSVTETDVRNELVKVRMMEARVIVVHGYSRT 230 (930)
Q Consensus 163 aii~~d~~~g~~~~~~~~~~l-~~~g~~i~~~~~--~-~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~~ 230 (930)
+++...... . ..+.+.+ ++.|.++..... + ..........+...+.++...++|+||+.|..-.
T Consensus 119 gVlat~~t~---~-~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~~~l~~~~~~l~~~~~d~IvLgCT~~~ 186 (228)
T 2eq5_A 119 GVLNLTEET---P-KVIRSILGNNLIAEDHPSGVSNTLDLLTDWGRREVINAAKRLKEKGVEVIALGCTGMS 186 (228)
T ss_dssp EEECSSSCC---C-HHHHHHHGGGEEEEECCTTCCSGGGGGSHHHHHHHHHHHHHHHHTTCSEEEECCTHHH
T ss_pred EEEecCccc---H-HHHHHHHHHHhCccccCCceeeHHHhcChHHHHHHHHHHHHHHHcCCCEEEECCCCcc
Confidence 999875332 2 3577888 777776421000 0 0000001233556666776678999999877643
No 208
>1ixc_A CBNR, LYSR-type regulatory protein; long alpha helix connecting DNA binding and regulatory domai binding protein; 2.20A {Cupriavidus necator} SCOP: a.4.5.37 c.94.1.1 PDB: 1iz1_A
Probab=87.00 E-value=8.2 Score=39.40 Aligned_cols=84 Identities=8% Similarity=0.023 Sum_probs=56.7
Q ss_pred CcceEEEecCcccccccEEeecCcceEEEEeHHHHHHHHHHCCCcccEEEEeCCCCCCCCCHHHHHHHHHcCcccEEEec
Q 002371 461 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGD 540 (930)
Q Consensus 461 g~~lrv~v~~~~~~~p~~~~~~~~~~~~G~~~dll~~l~~~ln~~~~~~~~~~~~~~~n~~~~~l~~~l~~g~~D~~~~~ 540 (930)
..+||||+.. .+. ..+..+++..+.++.+ .++++... ++..+++.+|.+|++|+++..
T Consensus 90 ~g~l~Ig~~~--~~~------------~~~l~~~l~~f~~~~P-~i~l~~~~-------~~~~~~~~~l~~g~~Dl~i~~ 147 (294)
T 1ixc_A 90 VGELSVAYFG--TPI------------YRSLPLLLRAFLTSTP-TATVSLTH-------MTKDEQVEGLLAGTIHVGFSR 147 (294)
T ss_dssp CEEEEEEECS--GGG------------GTHHHHHHHHHHHHCT-TEEEEEEE-------CCHHHHHHHHHHTSCSEEEES
T ss_pred CceEEEEEcc--chh------------HHHHHHHHHHHHHHCC-CcEEEEEe-------CCHHHHHHHHHCCCccEEEEe
Confidence 3578999885 221 1334677888888875 45666655 557789999999999999864
Q ss_pred EEEecCccceeeecccccccceEEEEeccC
Q 002371 541 IAIVTNRTKAVDFTQPYIESGLVVVAPVRK 570 (930)
Q Consensus 541 ~~~t~~R~~~vdfs~p~~~~~~~~~v~~~~ 570 (930)
.... ...+. ..++....++++++...
T Consensus 148 ~~~~---~~~l~-~~~l~~~~~~~v~~~~~ 173 (294)
T 1ixc_A 148 FFPR---HPGIE-IVNIAQEDLYLAVHRSQ 173 (294)
T ss_dssp CCCC---CTTEE-EEEEEEEEEEEEEEGGG
T ss_pred cCCC---CCCce-EEEEeeccEEEEEeCCC
Confidence 3221 12222 35677888888888665
No 209
>1uth_A LYSR-type regulatory protein; transcription regulation, transcriptional regulator; 2.2A {Burkholderia SP} SCOP: c.94.1.1 PDB: 1utb_A 1utb_B 1uth_B 2uyf_A 2uye_A
Probab=86.75 E-value=5.3 Score=41.64 Aligned_cols=84 Identities=12% Similarity=0.173 Sum_probs=53.9
Q ss_pred CcceEEEecCcccccccEEeecCcceEEEEeHHHHHHHHHHCCCcccEEEEeCCCCCCCCCHHHHHHHHHcCcccEEEec
Q 002371 461 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGD 540 (930)
Q Consensus 461 g~~lrv~v~~~~~~~p~~~~~~~~~~~~G~~~dll~~l~~~ln~~~~~~~~~~~~~~~n~~~~~l~~~l~~g~~D~~~~~ 540 (930)
..+||||+.. ... ..+...++..+.++.+ .+.+.... ++..+++.+|.+|++|+++..
T Consensus 104 ~~~l~Ig~~~--~~~------------~~~l~~~l~~f~~~~P-~v~l~l~~-------~~~~~~~~~l~~g~~Dl~i~~ 161 (315)
T 1uth_A 104 TRTFNLAMTD--IGE------------MYFMPPLMEALAQRAP-HIQISTLR-------PNAGNLKEDMESGAVDLALGL 161 (315)
T ss_dssp CCEEEEECCH--HHH------------HHHHHHHHHHHHHHCT-TCEEEEEC-------TTSSCHHHHHHHTSCCEEEEC
T ss_pred ceEEEEEech--HHH------------HHHHHHHHHHHHHHCC-CcEEEEEe-------CCcccHHHHHHCCCCCEEEec
Confidence 3579999863 110 1234567788888875 35566554 456788999999999999863
Q ss_pred EEEecCccceeeecccccccceEEEEeccC
Q 002371 541 IAIVTNRTKAVDFTQPYIESGLVVVAPVRK 570 (930)
Q Consensus 541 ~~~t~~R~~~vdfs~p~~~~~~~~~v~~~~ 570 (930)
.. .....+. ..|+....++++++...
T Consensus 162 ~~---~~~~~l~-~~~l~~~~~~~v~~~~h 187 (315)
T 1uth_A 162 LP---ELQTGFF-QRRLFRHRYVCMFRKDH 187 (315)
T ss_dssp CT---TCCTTEE-EEEEEEECEEEEEETTC
T ss_pred CC---CCCCCce-EEEeeccceEEEEeCCC
Confidence 21 1112222 35677788888887654
No 210
>1twy_A ABC transporter, periplasmic substrate-binding PR; nysgxrc target, structural genomics, protei structure initiative, PSI; 1.65A {Vibrio cholerae o1 biovar eltor} SCOP: c.94.1.1
Probab=86.11 E-value=18 Score=36.57 Aligned_cols=71 Identities=14% Similarity=0.049 Sum_probs=46.4
Q ss_pred eHHHHHHHHHHCCCcccEEEEeCCCCCCCCCHHHHHHHHHcCcccEEEecEEEecCcc-ceeeecccccccceEEEEecc
Q 002371 491 CIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGDIAIVTNRT-KAVDFTQPYIESGLVVVAPVR 569 (930)
Q Consensus 491 ~~dll~~l~~~ln~~~~~~~~~~~~~~~n~~~~~l~~~l~~g~~D~~~~~~~~t~~R~-~~vdfs~p~~~~~~~~~v~~~ 569 (930)
-.+++..+.++.+ .++++... ++..+++.+|.+|++|+++.......++. ..+. ..|+....++++++..
T Consensus 42 l~~~l~~f~~~~P-~i~v~i~~-------~~~~~~~~~l~~g~~Di~i~~~~~~~~~~~~~~~-~~~l~~~~~~~v~~~~ 112 (290)
T 1twy_A 42 MDVLAEKYNQQHP-ETYVAVQG-------VGSTAGISLLKKGVADIAMTSRYLTESEAQNTLH-TFTLAFDGLAIVVNQA 112 (290)
T ss_dssp HHHHHHHHHHHCT-TCEEEEEE-------SCHHHHHHHHHTTSCSEEEESSCCCTTTCCTTCE-EEEEEEEEEEEEECTT
T ss_pred HHHHHHHHHhhCC-CceEEEEe-------cCcHHHHHHHhcCCCcEEEecCCCchhhhhcCce-EEEEEeeeEEEEECCC
Confidence 3567888888873 24455544 56789999999999999986432222110 1222 3567788888888765
Q ss_pred C
Q 002371 570 K 570 (930)
Q Consensus 570 ~ 570 (930)
.
T Consensus 113 ~ 113 (290)
T 1twy_A 113 N 113 (290)
T ss_dssp C
T ss_pred C
Confidence 5
No 211
>2h9b_A HTH-type transcriptional regulator BENM; LTTR, transcriptional activator, LYSR-type transcripti regulator; 1.80A {Acinetobacter SP} PDB: 2h99_A 3k1m_A 3k1n_A 3k1p_A 2f7a_A* 2f6p_A 2f78_A 2f6g_A* 2f8d_A 2f97_A*
Probab=86.04 E-value=20 Score=36.98 Aligned_cols=82 Identities=17% Similarity=0.221 Sum_probs=55.5
Q ss_pred ceEEEecCcccccccEEeecCcceEEEEeHHHHHHHHHHCCCcccEEEEeCCCCCCCCCHHHHHHHHHcCcccEEEecEE
Q 002371 463 QLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGDIA 542 (930)
Q Consensus 463 ~lrv~v~~~~~~~p~~~~~~~~~~~~G~~~dll~~l~~~ln~~~~~~~~~~~~~~~n~~~~~l~~~l~~g~~D~~~~~~~ 542 (930)
+||||+.. .+. ..+-.+++..+.++.+ .++++... ++..+++.+|.+|++|+++....
T Consensus 91 ~l~Ig~~~--~~~------------~~~l~~~l~~f~~~~P-~v~i~l~~-------~~~~~~~~~l~~g~~Dlai~~~~ 148 (312)
T 2h9b_A 91 TIRIGFVG--SLL------------FGLLPRIIHLYRQAHP-NLRIELYE-------MGTKAQTEALKEGRIDAGFGRLK 148 (312)
T ss_dssp EEEEEECG--GGG------------GTTHHHHHHHHHHTCT-TCEEEEEE-------CCHHHHHHHHHTTSCSEEEESSC
T ss_pred eEEEEech--hhh------------HhhHHHHHHHHHHHCC-CcEEEEEe-------CCHHHHHHHHHcCCCCEEEEeCC
Confidence 79999875 111 1344677888888775 35566655 56889999999999999987432
Q ss_pred EecCccceeeecccccccceEEEEeccC
Q 002371 543 IVTNRTKAVDFTQPYIESGLVVVAPVRK 570 (930)
Q Consensus 543 ~t~~R~~~vdfs~p~~~~~~~~~v~~~~ 570 (930)
.. ...+. +.++....++++++...
T Consensus 149 ~~---~~~l~-~~~L~~~~~~~v~~~~h 172 (312)
T 2h9b_A 149 IS---DPAIK-HSLLRNERLMVAVHASH 172 (312)
T ss_dssp CC---CTTEE-EEEEEEEEEEEEEETTS
T ss_pred CC---CCCce-EEEeecceEEEEEcCCC
Confidence 21 11222 35677888888888655
No 212
>2hqb_A Transcriptional activator of COMK gene; berkeley structure genomics center target 1957B, structural genomics, PSI; 2.70A {Bacillus halodurans}
Probab=85.36 E-value=8.9 Score=39.61 Aligned_cols=121 Identities=8% Similarity=-0.040 Sum_probs=77.5
Q ss_pred EEEeEEeecCCCcchHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccCChhhHHH
Q 002371 27 LNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVMAHV 106 (930)
Q Consensus 27 I~IG~~~~l~~~~G~~~~~a~~lAve~iN~~ggil~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~S~~~~a 106 (930)
=+||.+....... ...|++.++++.| +. ++.+++..+-.++..+.+++.+|+++++.+|+.... ..+..
T Consensus 127 ~~Ig~i~g~~~~~---r~~Gf~~~~~~~~------~~-~~~~~~~~~~~~~~~g~~~a~~ll~~~~daI~~~~D-~~a~G 195 (296)
T 2hqb_A 127 HKVGVIAAFPWQP---EVEGFVDGAKYMN------ES-EAFVRYVGEWTDADKALELFQELQKEQVDVFYPAGD-GYHVP 195 (296)
T ss_dssp SEEEEEESCTTCH---HHHHHHHHHHHTT------CC-EEEEEECSSSSCHHHHHHHHHHHHTTTCCEEECCCT-TTHHH
T ss_pred CeEEEEcCcCchh---hHHHHHHHHHHhC------CC-eEEEEeeccccCHHHHHHHHHHHHHCCCcEEEECCC-CCCHH
Confidence 4788887654322 6789999998875 23 555544444457888999999999989999997544 45566
Q ss_pred HHHhhhcCCCcEEEeecCCCCCCCC-CCCeEEEccCChHHHHHHHHHHHHHcCCcE
Q 002371 107 LSHLANELQVPLLSFTALDPTLSPL-QYPFFVQTAPNDLYLMSAIAEMVSYFGWGE 161 (930)
Q Consensus 107 v~~~~~~~~vp~is~~a~~~~ls~~-~~~~~fr~~p~~~~~~~ai~~~l~~~~w~~ 161 (930)
+...+.+.++.+|.+.. +. ... ..|.+-....+-...+..+++.+..-.|+.
T Consensus 196 v~~a~~e~Gv~viG~D~-~~--~~~~~~~~LTsv~~~~~~~~~~a~~~~~~g~~~~ 248 (296)
T 2hqb_A 196 VVEAIKDQGDFAIGYVG-DQ--ADLGGSTILTSTVQHVDDLYVLVAKRFQEGKLES 248 (296)
T ss_dssp HHHHHHHHTCEEEEEES-CC--SSSSCSSEEEEEEECHHHHHHHHHHHTTTTCCCC
T ss_pred HHHHHHHcCCEEEEEec-ch--hhhCCCeEEEEEEEEhHHHHHHHHHHHHcCCCCC
Confidence 66777778899998866 22 221 124444444444445555555554445653
No 213
>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics,struct proteomics in europe, spine; 2.70A {Klebsiella pneumoniae}
Probab=85.08 E-value=4.9 Score=43.54 Aligned_cols=88 Identities=17% Similarity=0.206 Sum_probs=65.8
Q ss_pred HHHHHHHHcCCcEEEEEEecCCcCc--chHHHHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCCceEEEEEc
Q 002371 149 AIAEMVSYFGWGEVIAIFNDDDQGR--NGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHG 226 (930)
Q Consensus 149 ai~~~l~~~~w~~vaii~~d~~~g~--~~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~ 226 (930)
.+.++++.+|.+++.+|+....+.. +..+.+.+.|++.|+++..-..+.++ .+.+.+...+..+++.++|+||-.+
T Consensus 23 ~l~~~l~~~g~~~~livtd~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~--p~~~~v~~~~~~~~~~~~d~IIavG 100 (387)
T 3bfj_A 23 VVGERCQLLGGKKALLVTDKGLRAIKDGAVDKTLHYLREAGIEVAIFDGVEPN--PKDTNVRDGLAVFRREQCDIIVTVG 100 (387)
T ss_dssp GHHHHHHHTTCSEEEEECCTTTC--CCSSHHHHHHHHHHTTCEEEEECCCCSS--CBHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred HHHHHHHHcCCCEEEEEECcchhhccchHHHHHHHHHHHcCCeEEEECCccCC--CCHHHHHHHHHHHHhcCCCEEEEeC
Confidence 3566777888899999987666555 58999999999999887543334444 5678889999999999999999765
Q ss_pred ch--hhHHHHHHHH
Q 002371 227 YS--RTGLMVFDVA 238 (930)
Q Consensus 227 ~~--~~~~~~~~~a 238 (930)
.+ -|..+++...
T Consensus 101 GGsv~D~aK~iA~~ 114 (387)
T 3bfj_A 101 GGSPHDCGKGIGIA 114 (387)
T ss_dssp SHHHHHHHHHHHHH
T ss_pred CcchhhHHHHHHHH
Confidence 44 5777776665
No 214
>3ox4_A Alcohol dehydrogenase 2; iron, NAD, oxidoreductase; HET: NAD; 2.00A {Zymomonas mobilis} PDB: 3owo_A*
Probab=84.70 E-value=3.9 Score=44.22 Aligned_cols=90 Identities=11% Similarity=0.072 Sum_probs=68.1
Q ss_pred HHHHHHHHHcCCcEEEEEEecCCcCcchHHHHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCCceEEEEEcc
Q 002371 148 SAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY 227 (930)
Q Consensus 148 ~ai~~~l~~~~w~~vaii~~d~~~g~~~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~ 227 (930)
..+.++++.+|.+++.+|+...-...+..+.+.+.|++.|+++..-..+.+. .+.+.+...++.+++.++|+||-.+.
T Consensus 20 ~~l~~~~~~~g~~~~liVtd~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~--p~~~~v~~~~~~~~~~~~D~IIavGG 97 (383)
T 3ox4_A 20 EKAIKDLNGSGFKNALIVSDAFMNKSGVVKQVADLLKAQGINSAVYDGVMPN--PTVTAVLEGLKILKDNNSDFVISLGG 97 (383)
T ss_dssp HHHHHTTTTSCCCEEEEEEEHHHHHTTHHHHHHHHHHTTTCEEEEEEEECSS--CBHHHHHHHHHHHHHHTCSEEEEEES
T ss_pred HHHHHHHHHcCCCEEEEEECCchhhCchHHHHHHHHHHcCCeEEEECCccCC--CCHHHHHHHHHHHHhcCcCEEEEeCC
Confidence 4466677888999999998765444446889999999999987544445555 55888999999999999999998765
Q ss_pred h--hhHHHHHHHHH
Q 002371 228 S--RTGLMVFDVAQ 239 (930)
Q Consensus 228 ~--~~~~~~~~~a~ 239 (930)
+ -|..+++....
T Consensus 98 Gsv~D~aK~ia~~~ 111 (383)
T 3ox4_A 98 GSPHDCAKAIALVA 111 (383)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH
Confidence 5 56677766655
No 215
>2h98_A HTH-type transcriptional regulator CATM; BENM, LTTR; 1.80A {Acinetobacter SP} PDB: 2h9q_A* 2f7b_A 2f7c_A* 3glb_A* 3m1e_A
Probab=84.28 E-value=28 Score=35.87 Aligned_cols=82 Identities=20% Similarity=0.245 Sum_probs=55.3
Q ss_pred ceEEEecCcccccccEEeecCcceEEEEeHHHHHHHHHHCCCcccEEEEeCCCCCCCCCHHHHHHHHHcCcccEEEecEE
Q 002371 463 QLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGDIA 542 (930)
Q Consensus 463 ~lrv~v~~~~~~~p~~~~~~~~~~~~G~~~dll~~l~~~ln~~~~~~~~~~~~~~~n~~~~~l~~~l~~g~~D~~~~~~~ 542 (930)
+||||+.. .+. ..+...++..+.++.+ .++++... ++..+++.+|.+|++|+++....
T Consensus 91 ~l~Ig~~~--~~~------------~~~l~~~l~~f~~~~P-~v~l~l~~-------~~~~~~~~~l~~g~~Dlai~~~~ 148 (313)
T 2h98_A 91 TLRIGYVS--SLL------------YGLLPEIIYLFRQQNP-EIHIELIE-------CGTKDQINALKQGKIDLGFGRLK 148 (313)
T ss_dssp EEEEEECG--GGG------------GTTHHHHHHHHHHHCT-TSEEEEEE-------CCHHHHHHHHHHTSCSEEEESSC
T ss_pred EEEEEech--HhH------------HhHHHHHHHHHHHHCC-CeEEEEEe-------CChHHHHHHHHcCCCCEEEEeCC
Confidence 79999875 211 1344678888888875 35566654 56789999999999999986332
Q ss_pred EecCccceeeecccccccceEEEEeccC
Q 002371 543 IVTNRTKAVDFTQPYIESGLVVVAPVRK 570 (930)
Q Consensus 543 ~t~~R~~~vdfs~p~~~~~~~~~v~~~~ 570 (930)
.. ...+. ..++....++++++...
T Consensus 149 ~~---~~~l~-~~~L~~~~~~~v~~~~h 172 (313)
T 2h98_A 149 IT---DPAIR-RIMLHKEQLKLAIHKHH 172 (313)
T ss_dssp CC---CTTEE-EEEEEEEEEEEEEETTS
T ss_pred CC---CCCee-EEEeeeCcEEEEEcCCC
Confidence 11 11222 35677788888887654
No 216
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Probab=83.83 E-value=1.9 Score=45.18 Aligned_cols=57 Identities=11% Similarity=0.056 Sum_probs=50.5
Q ss_pred cchhhHHHHHHHhhcccc--CCcccchhHHHHHHHHHHHHHhhhhhhhhhheeeeeccc
Q 002371 619 QIVTVLWFSFSTMFFAHR--ENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQL 675 (930)
Q Consensus 619 ~~~~~~~~~~~~l~~~~~--~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~ 675 (930)
++.+++||++.++..-|. -.|.+..+|++.+++.++++++.+.-++.+++.++.+..
T Consensus 78 s~~~a~y~s~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~i~~~~~~~~~ 136 (321)
T 2qks_A 78 GFGGAFFFSVETLATVGYGDMHPQTVYAHWIATLEIFVGMSSIALATGCAFIKMSQPKK 136 (321)
T ss_dssp THHHHHHHHHHHHTTCCCCSSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred chhheeeeeeEEeccccCCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 789999999999987763 378999999999999999999999999999999887653
No 217
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=83.47 E-value=0.72 Score=49.62 Aligned_cols=74 Identities=15% Similarity=0.194 Sum_probs=57.1
Q ss_pred HHHHHhhhheeeccCCCCCCCCcccchhhHHHHHHHhhccc--cCCcccchhHHHHHHHHHHHHHhhhhhhhhhheeeee
Q 002371 595 LVVGTVVWILEHRLNDEFRGPPRKQIVTVLWFSFSTMFFAH--RENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTV 672 (930)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~ 672 (930)
++.+++.+.+++..+. ....++.+++|+++.++..-| .-.|.+..+|++.+++.++++++.+...+.+++.+..
T Consensus 141 ~~~a~~~~~~e~~~~~----~~f~~~~~s~y~~~~t~ttvGygd~~p~t~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~ 216 (355)
T 3beh_A 141 FAVALAAYVIERDIQP----EKFGSIPQAMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSGIGIFGLWAGILATGFYQ 216 (355)
T ss_dssp HHHHHHHHHHHTTTCH----HHHSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCCC----cccccHHHHHHHHHhheeecCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666654321 112368899999999998775 3378999999999999999999999999999887764
No 218
>3k6v_A Solute-binding protein MA_0280; MODA, molybdate, periplasmic BIN protein, ABC transporter, transport protein, ligand, metal- protein; HET: CIT; 1.69A {Methanosarcina acetivorans} PDB: 3k6u_A* 3k6w_A 3k6x_A
Probab=83.22 E-value=18 Score=38.31 Aligned_cols=69 Identities=9% Similarity=0.046 Sum_probs=43.6
Q ss_pred HHHHHHHHHC-CCcccEEEEeCCCCCCCCCHHHHHHHHH-cC-cccEEEecEEEecCcc---ceeeecccccccceEEEE
Q 002371 493 DVFLAAVRLL-PYAVPYKFIPYGDGHKNPTYSELINQIT-TG-VFDAAVGDIAIVTNRT---KAVDFTQPYIESGLVVVA 566 (930)
Q Consensus 493 dll~~l~~~l-n~~~~~~~~~~~~~~~n~~~~~l~~~l~-~g-~~D~~~~~~~~t~~R~---~~vdfs~p~~~~~~~~~v 566 (930)
++.+.+.++. |.++++.+ +.-..++.++. .| .+|+.++.-.-..++. ...+...+|....+++++
T Consensus 59 ~l~~~Fe~~~pgv~V~~~~---------ggSg~l~~qi~e~G~~aDVf~sad~~~~~~l~~~g~~~~~~~~a~n~lVliv 129 (354)
T 3k6v_A 59 ELEAEFEAQHPGVDVQREA---------AGSAQSVRKITELGKKADVLASADYALIPSLMVPEYADWYAAFARNQMILAY 129 (354)
T ss_dssp HHHHHHHHHSTTCEEEEEE---------ECHHHHHHHHHTSCCCCSEEEESSTTHHHHHTTTTTCSCEEEEEECCEEEEE
T ss_pred HHHHHHHHHCCCcEEEEEe---------CCHHHHHHHHHhcCCCccEEEECCHHHHHHHHhCCCCCCceEeECCeEEEEE
Confidence 6777888887 87766654 33557788885 35 6998876321111111 123445678888899999
Q ss_pred eccC
Q 002371 567 PVRK 570 (930)
Q Consensus 567 ~~~~ 570 (930)
|+..
T Consensus 130 ~~~~ 133 (354)
T 3k6v_A 130 TNES 133 (354)
T ss_dssp CTTS
T ss_pred ECCC
Confidence 8766
No 219
>2zsk_A PH1733, 226AA long hypothetical aspartate racemase; alpha/beta fold, unknown function; 2.55A {Pyrococcus horikoshii}
Probab=82.96 E-value=5.3 Score=39.49 Aligned_cols=80 Identities=16% Similarity=0.152 Sum_probs=51.0
Q ss_pred HHHHHHhcCcEEEEccCChhhHHHHHHhhhcCCCcEEEeecCCCCCCCCCCCeEEEccCChHHHHHHHHHHHHHcCCcEE
Q 002371 83 GALQFMETDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEV 162 (930)
Q Consensus 83 ~a~~li~~~v~aiiGp~~S~~~~av~~~~~~~~vp~is~~a~~~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~~~w~~v 162 (930)
.+..|.+.|+++|+-+-.+.... +..+-+..++|++.. .++.++.+...+-++|
T Consensus 65 ~~~~L~~~g~d~iviaCnTa~~~-~~~l~~~~~iPvi~i-------------------------~~a~~~~~~~~~~~ri 118 (226)
T 2zsk_A 65 AAKALERAGAELIAFAANTPHLV-FDDVQREVNVPMVSI-------------------------IDAVAEEILKRGVRKV 118 (226)
T ss_dssp HHHHHHHHTCSEEEESSSGGGGG-HHHHHHHCSSCBCCH-------------------------HHHHHHHHHHTTCCEE
T ss_pred HHHHHHHcCCCEEEECCCcHHHH-HHHHHHhCCCCEecc-------------------------HHHHHHHHHHcCCCeE
Confidence 33444445999999877766543 456666778888852 2444444555678999
Q ss_pred EEEEecCCcCcchHHHHHHHHHhcCcEEE
Q 002371 163 IAIFNDDDQGRNGVTALGDKLAEIRCKIS 191 (930)
Q Consensus 163 aii~~d~~~g~~~~~~~~~~l~~~g~~i~ 191 (930)
+++.... ... ...+++.+++.|+++.
T Consensus 119 gvlaT~~--T~~-~~~y~~~l~~~g~~v~ 144 (226)
T 2zsk_A 119 LLLGTKT--TMT-ADFYIKTLEEKGLEVV 144 (226)
T ss_dssp EEESSTT--TTS-CHHHHHHHHTTTCEEE
T ss_pred EEEeCHH--HHh-hhHHHHHHHHCCCEEE
Confidence 9997432 222 2356788888888764
No 220
>1jfl_A Aspartate racemase; alpha-beta structure, HOMO-dimer, homologous domains, isomer; 1.90A {Pyrococcus horikoshii} SCOP: c.78.2.1 c.78.2.1 PDB: 2dx7_A* 1iu9_A
Probab=82.13 E-value=8.1 Score=38.19 Aligned_cols=81 Identities=12% Similarity=0.197 Sum_probs=51.8
Q ss_pred HHHHHHHhcCcEEEEccCChhhHHHHHHhhhcCCCcEEEeecCCCCCCCCCCCeEEEccCChHHHHHHHHHHHHHcCCcE
Q 002371 82 MGALQFMETDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGE 161 (930)
Q Consensus 82 ~~a~~li~~~v~aiiGp~~S~~~~av~~~~~~~~vp~is~~a~~~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~~~w~~ 161 (930)
+.+..|.+.++++|+=+-.+.. .++-.+-+..++|++.. .++.++.+...+-++
T Consensus 65 ~~~~~l~~~g~d~iviaCnTa~-~~~~~l~~~~~iPvi~i-------------------------~~~~~~~a~~~~~~r 118 (228)
T 1jfl_A 65 WTAKRLEECGADFIIMPCNTAH-AFVEDIRKAIKIPIISM-------------------------IEETAKKVKELGFKK 118 (228)
T ss_dssp HHHHHHHHHTCSEEECSCTGGG-GGHHHHHHHCSSCBCCH-------------------------HHHHHHHHHHTTCSE
T ss_pred HHHHHHHHcCCCEEEEcCccHH-HHHHHHHHhCCCCEech-------------------------HHHHHHHHHHcCCCe
Confidence 5556666669999998777765 55666777778988852 133444444447789
Q ss_pred EEEEEecCCcCcchHHHHHHHHHhcCcEEE
Q 002371 162 VIAIFNDDDQGRNGVTALGDKLAEIRCKIS 191 (930)
Q Consensus 162 vaii~~d~~~g~~~~~~~~~~l~~~g~~i~ 191 (930)
|+++..... .....+++.+++.|.++.
T Consensus 119 igvlaT~~T---~~~~~y~~~l~~~g~~v~ 145 (228)
T 1jfl_A 119 AGLLATTGT---IVSGVYEKEFSKYGVEIM 145 (228)
T ss_dssp EEEECCHHH---HHHTHHHHHHHHTTCEEE
T ss_pred EEEEecHHH---hhhhHHHHHHHHCCCeEE
Confidence 999864421 112456677777787753
No 221
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=81.60 E-value=30 Score=33.12 Aligned_cols=159 Identities=16% Similarity=0.131 Sum_probs=96.5
Q ss_pred eEEEeEEeecCCCcchHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccCChhhHH
Q 002371 26 VLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVMAH 105 (930)
Q Consensus 26 ~I~IG~~~~l~~~~G~~~~~a~~lAve~iN~~ggil~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~S~~~~ 105 (930)
..+|.++.|... ...-++-...+.| ..+.+.. ++-..++..++++ ++++++||.-..+ +.
T Consensus 4 ~~~I~~iapy~~-----l~~~~~~i~~e~~--------~~i~i~~----~~l~~~v~~a~~~-~~~~dVIISRGgt--a~ 63 (196)
T 2q5c_A 4 SLKIALISQNEN-----LLNLFPKLALEKN--------FIPITKT----ASLTRASKIAFGL-QDEVDAIISRGAT--SD 63 (196)
T ss_dssp CCEEEEEESCHH-----HHHHHHHHHHHHT--------CEEEEEE----CCHHHHHHHHHHH-TTTCSEEEEEHHH--HH
T ss_pred CCcEEEEEccHH-----HHHHHHHHHhhhC--------CceEEEE----CCHHHHHHHHHHh-cCCCeEEEECChH--HH
Confidence 357888877642 2333333444432 2444333 3467788999999 8899999963322 22
Q ss_pred HHHHhhhcCCCcEEEeecCCCCCCCCCCCeEEEccCChHHHHHHHHHHHHHcCCcEEEEEEecCCcCcchHHHHHHHHHh
Q 002371 106 VLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAE 185 (930)
Q Consensus 106 av~~~~~~~~vp~is~~a~~~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~~~w~~vaii~~d~~~g~~~~~~~~~~l~~ 185 (930)
. +-+..++|+|... .+.....+++...- .++ ++++++...+.. ...+.+.+.+
T Consensus 64 ~---lr~~~~iPVV~I~------------------~s~~Dil~al~~a~-~~~-~kIavvg~~~~~--~~~~~~~~ll-- 116 (196)
T 2q5c_A 64 Y---IKKSVSIPSISIK------------------VTRFDTMRAVYNAK-RFG-NELALIAYKHSI--VDKHEIEAML-- 116 (196)
T ss_dssp H---HHTTCSSCEEEEC------------------CCHHHHHHHHHHHG-GGC-SEEEEEEESSCS--SCHHHHHHHH--
T ss_pred H---HHHhCCCCEEEEc------------------CCHhHHHHHHHHHH-hhC-CcEEEEeCcchh--hHHHHHHHHh--
Confidence 2 2244679998632 23334445555443 344 489988754432 2355566655
Q ss_pred cCcEEEEEEecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchhhHHHHHHHHHHcCCC
Q 002371 186 IRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMM 244 (930)
Q Consensus 186 ~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~~~~~~~~~a~~~g~~ 244 (930)
|.++.... +. +.++....+.++++.+.++|+-.+. ..+.|++.||.
T Consensus 117 -~~~i~~~~-~~-----~~~e~~~~i~~l~~~G~~vvVG~~~------~~~~A~~~Gl~ 162 (196)
T 2q5c_A 117 -GVKIKEFL-FS-----SEDEITTLISKVKTENIKIVVSGKT------VTDEAIKQGLY 162 (196)
T ss_dssp -TCEEEEEE-EC-----SGGGHHHHHHHHHHTTCCEEEECHH------HHHHHHHTTCE
T ss_pred -CCceEEEE-eC-----CHHHHHHHHHHHHHCCCeEEECCHH------HHHHHHHcCCc
Confidence 56665432 22 2678899999999999999776433 35677888974
No 222
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=80.30 E-value=1.4 Score=49.81 Aligned_cols=72 Identities=13% Similarity=0.165 Sum_probs=54.5
Q ss_pred HHHhhhheeeccCCCCCCCCcccchhhHHHHHHHhhccc--cCCcccchhHHHHHHHHHHHHHhhhhhhhhhheeeee
Q 002371 597 VGTVVWILEHRLNDEFRGPPRKQIVTVLWFSFSTMFFAH--RENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTV 672 (930)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~ 672 (930)
.+.+.+..+... ......++.+++|+++.++..-| .-.|.+..+|++.++++++++++.+.+.|.+.+.+..
T Consensus 357 f~~~~~~~e~~~----~~~~F~s~~~a~y~~~vT~TTvGYGDi~P~t~~gr~f~~~~~l~G~~~l~l~iavI~~~f~~ 430 (514)
T 2r9r_B 357 FSSAVYFAEADE----RDSQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNY 430 (514)
T ss_dssp HHHHHHHHHTTC----TTCSCSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHhhhheeeccC----CCccccchhhhhheeeeEEEecccCCCCCCCcchHhhehhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455554321 23344568999999999998775 3378888999999999999999999999999876654
No 223
>3hhf_B Transcriptional regulator, LYSR family; transcription factor, structur genomics, oxford protein production facility, OPPF; 2.30A {Neisseria meningitidis serogroup B}
Probab=79.94 E-value=2.7 Score=40.45 Aligned_cols=81 Identities=11% Similarity=0.070 Sum_probs=49.4
Q ss_pred CcceEEEecCcccccccEEeecCcceEEEEeHHHHHHHHHHCCCcccEEEEeCCCCCCCCCHHHHHHHHHcCcccEEEec
Q 002371 461 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGD 540 (930)
Q Consensus 461 g~~lrv~v~~~~~~~p~~~~~~~~~~~~G~~~dll~~l~~~ln~~~~~~~~~~~~~~~n~~~~~l~~~l~~g~~D~~~~~ 540 (930)
..+||||+.. .. ...+-.+++..+.++.+ .++++... . +.+..|.+|++|+++..
T Consensus 6 ~g~l~Ig~~~--~~------------~~~~l~~~l~~f~~~~P-~v~l~i~~-------~---~~~~~l~~g~~D~~i~~ 60 (213)
T 3hhf_B 6 QGVLSVDSAM--PM------------VLHLLAPLAAKFNERYP-HIRLSLVS-------S---EGYINLIERKVDIALRA 60 (213)
T ss_dssp CEEEEEEECH--HH------------HHHTHHHHHHHHHHHCT-TEEEEEEC-------C---STTHHHHTTSSSEEEEC
T ss_pred CceEEEecCH--HH------------HHHHHHHHHHHHHHHCC-CcEEEEEe-------C---CcHHHHHhCCccEEEEE
Confidence 3578888874 11 11245678888888875 35555542 1 11345889999999874
Q ss_pred EEEecCccceeeecccccccceEEEEeccC
Q 002371 541 IAIVTNRTKAVDFTQPYIESGLVVVAPVRK 570 (930)
Q Consensus 541 ~~~t~~R~~~vdfs~p~~~~~~~~~v~~~~ 570 (930)
.... ...+. +.++.+..+++++++..
T Consensus 61 ~~~~---~~~~~-~~~l~~~~~~~v~~~~~ 86 (213)
T 3hhf_B 61 GELD---DSGLR-ARHLFDSRFRVIASPEY 86 (213)
T ss_dssp C--C---CSSEE-EEEEEEECEEEEECHHH
T ss_pred ecCC---Cccce-EEeeecceEEEEeCHHH
Confidence 3222 12222 46778888888887654
No 224
>3kos_A HTH-type transcriptional activator AMPR; alpha-beta sandwich, DNA-binding, transcription regulation; HET: MES; 1.83A {Citrobacter freundii} PDB: 3kot_A
Probab=78.57 E-value=15 Score=35.14 Aligned_cols=106 Identities=10% Similarity=0.005 Sum_probs=59.3
Q ss_pred CCChHHhhhCCCeEEEEeCchhHHHHHHhcCCC---ccceEeCCCHHHHHHHHHcCCcEEEEccchhhHHHHhcCcceEE
Q 002371 679 IKGIDTLMTSNDRVGYQVGSFAENYLIEELSIP---KSRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSDHCQFSV 755 (930)
Q Consensus 679 i~sl~dL~~s~~~i~~~~~s~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~~~l~~ 755 (930)
..+++||.+.. -|....+.....++.+..... .......++.+.....+..|.--+++-......+...... ...
T Consensus 95 ~~~~~~L~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~Gi~~lp~~~~~~~~~~~~l-~~~ 172 (219)
T 3kos_A 95 IQTPADILKFP-LLRSYRRDEWALWMQTVGEAPPSPTHNVMVFDSSVTMLEAAQAGMGVAIAPVRMFTHLLSSERI-VQP 172 (219)
T ss_dssp CSSGGGGGGSC-EEEESCTTHHHHHHHHTTCCCCCTTSCEEEESCHHHHHHHHHTTSCBEEEEGGGCHHHHHTTSS-BCC
T ss_pred cCCHHHHhcCc-eeccCCccCHHHHHHHcCCCCCccccceeEEccHHHHHHHHHcCCCeEeehHHhhHHHHHcCCe-ecc
Confidence 34678886332 244445665666664433221 1234677899999999998776676655444433322221 122
Q ss_pred eCCccccCccEEEecCCCcchhHHHHHHHhc
Q 002371 756 RGQEFTKSGWGFAFPRDSPLAIDMSTAILTL 786 (930)
Q Consensus 756 ~~~~~~~~~~~~~~~k~spl~~~~n~~i~~l 786 (930)
..+......++++.+|+.+....+...+..+
T Consensus 173 ~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~l 203 (219)
T 3kos_A 173 FLTQIDLGSYWITRLQSRPETPAMREFSRWL 203 (219)
T ss_dssp CCCCBCSCEEEEEEETTSCCCHHHHHHHHHH
T ss_pred ccCCccCCcEEEEecccccCCHHHHHHHHHH
Confidence 2223334467788888876665555554433
No 225
>1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase, PSI, protein structure initiative; HET: APR; 1.60A {Escherichia coli} SCOP: e.22.1.2 PDB: 2bi4_A* 2bl4_A*
Probab=78.45 E-value=7.4 Score=42.07 Aligned_cols=89 Identities=15% Similarity=0.142 Sum_probs=66.2
Q ss_pred HHHHHHHHcCCcEEEEEEecCCcCcchHHHHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCCceEEEEEcch
Q 002371 149 AIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS 228 (930)
Q Consensus 149 ai~~~l~~~~w~~vaii~~d~~~g~~~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~ 228 (930)
.+.++++.+|.+++.+|+....+..+..+.+.+.|++.|+++..-..+.++ .+.+.+...++.+++.++|+||-.+.+
T Consensus 21 ~l~~~l~~~g~~~~livtd~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~--p~~~~v~~~~~~~~~~~~d~IIavGGG 98 (386)
T 1rrm_A 21 ALTDEVKRRGYQKALIVTDKTLVQCGVVAKVTDKMDAAGLAWAIYDGVVPN--PTITVVKEGLGVFQNSGADYLIAIGGG 98 (386)
T ss_dssp GHHHHHHHHTCCEEEEECBHHHHHTTHHHHHHHHHHHTTCEEEEECBCCSS--CBHHHHHHHHHHHHHHTCSEEEEEESH
T ss_pred HHHHHHHHcCCCEEEEEECcchhhchHHHHHHHHHHHcCCeEEEECCccCC--CCHHHHHHHHHHHHhcCcCEEEEeCCh
Confidence 356677778889999998654444457889999999999887544445444 567888999999999999999976544
Q ss_pred --hhHHHHHHHHH
Q 002371 229 --RTGLMVFDVAQ 239 (930)
Q Consensus 229 --~~~~~~~~~a~ 239 (930)
-|...++....
T Consensus 99 sv~D~aK~iA~~~ 111 (386)
T 1rrm_A 99 SPQDTCKAIGIIS 111 (386)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 67777776655
No 226
>3onm_A Transcriptional regulator LRHA; LYSR, ROVM, transcription factor, virulence factor; 2.40A {Yersinia pseudotuberculosis}
Probab=78.36 E-value=43 Score=32.50 Aligned_cols=82 Identities=12% Similarity=0.079 Sum_probs=56.8
Q ss_pred CcceEEEecCcccccccEEeecCcceEEEEeHHHHHHHHHHCCCcccEEEEeCCCCCCCCCHHHHHHHHHcCcccEEEec
Q 002371 461 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGD 540 (930)
Q Consensus 461 g~~lrv~v~~~~~~~p~~~~~~~~~~~~G~~~dll~~l~~~ln~~~~~~~~~~~~~~~n~~~~~l~~~l~~g~~D~~~~~ 540 (930)
..+||||+.. .+. ..+..+++..+.++.+ .++++... ++..+++..|.+|++|+++..
T Consensus 26 ~g~l~Ig~~~--~~~------------~~~l~~~l~~f~~~~P-~i~l~i~~-------~~~~~~~~~L~~g~~Dl~i~~ 83 (238)
T 3onm_A 26 EGSLIIGASD--DTA------------DTLLPFLLNRVATLYP-RLAIDVRV-------KRSPFIADMLSSGEVDLAITT 83 (238)
T ss_dssp -CCEEEEECH--HHH------------TTHHHHHHHHHHHHCT-TCCEEEEE-------CCHHHHHHHHHHTSCSEEEEC
T ss_pred ceeEEEeccc--hhh------------HHHHHHHHHHHHHHCC-CcEEEEEE-------CCHHHHHHHHHCCCccEEEEe
Confidence 4679999975 111 1344678888888875 35566655 668899999999999999863
Q ss_pred EEEecCccceeeecccccccceEEEEeccC
Q 002371 541 IAIVTNRTKAVDFTQPYIESGLVVVAPVRK 570 (930)
Q Consensus 541 ~~~t~~R~~~vdfs~p~~~~~~~~~v~~~~ 570 (930)
... .. --+.++....+++++++..
T Consensus 84 ~~~-----~~-~~~~~l~~~~~~~v~~~~~ 107 (238)
T 3onm_A 84 AKV-----DS-HPHVILRTSPTLWYCSVDY 107 (238)
T ss_dssp SCC------C-CCEEEEEEECEEEEEETTC
T ss_pred cCC-----CC-cceEEeecCCEEEEEcCCC
Confidence 321 11 2356778888888888765
No 227
>3l6g_A Betaine ABC transporter permease and substrate BI protein; glycine betaine binding, substrate binding domain, venus FLY cell membrane; HET: B3P; 1.90A {Lactococcus lactis} PDB: 3l6h_A
Probab=77.96 E-value=8.4 Score=38.90 Aligned_cols=97 Identities=11% Similarity=0.103 Sum_probs=53.6
Q ss_pred eeccccCCCCChHHhhhC--CCeEEEEeCchhHHHHH---Hhc-CCCccceEeCCCHH----HHHHHHHcCCcEEEEccc
Q 002371 671 TVQQLSSPIKGIDTLMTS--NDRVGYQVGSFAENYLI---EEL-SIPKSRLVALGSPE----EYAIALENRTVAAVVDER 740 (930)
Q Consensus 671 t~~~~~~~i~sl~dL~~s--~~~i~~~~~s~~~~~l~---~~~-~~~~~~~~~~~~~~----~~~~~l~~g~~~a~~~~~ 740 (930)
.+|++. .|+|++||.+. +..+|+..|........ +.+ ++..-+++. .+.. +...++.+|+.+++..-.
T Consensus 89 ~Vp~~~-~i~si~DL~~~~~g~~~g~~~G~~~~~~~~~~l~~y~gL~~~~~v~-~s~~~m~~~l~~A~~~g~~~v~~~w~ 166 (256)
T 3l6g_A 89 VVPSYM-NVNSIEDLTNQANKTITGIEPGAGVMAASEKTLNSYDNLKDWKLVP-SSSGAMTVALGEAIKQHKDIVITGWS 166 (256)
T ss_dssp EEETTS-CCCBGGGCSSGGGGEEECCCTTCHHHHHHHHHHTTCGGGTTCEEEC-CCHHHHHHHHHHHHHTTCCCCEEEEE
T ss_pred EECCcc-CCCCHHHHHHhcCCeEEecCCCchhhHHHHHHHHhcCCCCCeEEec-CCHHHHHHHHHHHHHCCCCEEEEeec
Confidence 334433 78999999421 55677777775443221 345 443223332 2333 234778889998888776
Q ss_pred hhhHHHHhcCcceEEeCCc---c-ccCccEEEecCC
Q 002371 741 PYIDLFLSDHCQFSVRGQE---F-TKSGWGFAFPRD 772 (930)
Q Consensus 741 ~~~~~~~~~~~~l~~~~~~---~-~~~~~~~~~~k~ 772 (930)
+....- ++ +++.+..+ + .......+++++
T Consensus 167 p~~~~~--~~-~l~~LeDpk~~~~~~~~~~~vvr~~ 199 (256)
T 3l6g_A 167 PHWMFN--KY-DLKYLADPKGTMGTSENINTIVRKG 199 (256)
T ss_dssp SCTHHH--HS-CEEECBCTTCTTCCCEEEEEEEETT
T ss_pred Cchhhh--hc-CeEEecCCccccCCcceEEEeechh
Confidence 665442 22 56776533 2 223345566665
No 228
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=77.83 E-value=2.1 Score=43.60 Aligned_cols=67 Identities=9% Similarity=0.112 Sum_probs=51.3
Q ss_pred cchhhHHHHHHHhhccccC--Ccccc-------hhHHHHHHHHHHHHHhhhhhhhhhheeeeeccccCCCCChHHh
Q 002371 619 QIVTVLWFSFSTMFFAHRE--NTVST-------LGRVVLIIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIDTL 685 (930)
Q Consensus 619 ~~~~~~~~~~~~l~~~~~~--~~~s~-------~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL 685 (930)
.+.+++|+++.++...|-. .|.+. ..|++.++|+++++.+.....+.+++++...+....+..-+|+
T Consensus 201 s~~da~y~~~iTltTvGyGD~~p~t~~~~~~~~l~r~~~~~~il~Gl~~~~~~~~~i~~~~~~~~l~~~~~~~~~~ 276 (280)
T 3ukm_A 201 NFLESFYFCFISLSTIGLGDYVPGEGYNQKFRELYKIGITCYLLLGLIAMLVVLETFCELHELKKFRKMFYVKKDK 276 (280)
T ss_dssp CHHHHHHHHHHHHTTCCCCSCCSSCSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHTTC-----
T ss_pred chhhhhhheeeeeecccCCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 4789999999999877533 45555 3699999999999999999999999999888777665544443
No 229
>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP: e.22.1.2
Probab=75.28 E-value=10 Score=41.33 Aligned_cols=88 Identities=11% Similarity=0.119 Sum_probs=63.3
Q ss_pred HHHHHHHHcCCcEEEEEEecCCcCc-chHHHHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCCceEEEEEcc
Q 002371 149 AIAEMVSYFGWGEVIAIFNDDDQGR-NGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY 227 (930)
Q Consensus 149 ai~~~l~~~~w~~vaii~~d~~~g~-~~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~ 227 (930)
.+.++++.+|.+++.+|+.+...-. +..+.+.+.|++.|+++..-..+.+. .+.+.+...+..+++.++|+||-.+.
T Consensus 33 ~l~~~l~~~g~~r~liVtd~~~~~~~g~~~~v~~~L~~~g~~~~~f~~v~~~--p~~~~v~~~~~~~~~~~~D~IIavGG 110 (407)
T 1vlj_A 33 KIGEEIKNAGIRKVLFLYGGGSIKKNGVYDQVVDSLKKHGIEWVEVSGVKPN--PVLSKVHEAVEVAKKEKVEAVLGVGG 110 (407)
T ss_dssp GHHHHHHHTTCCEEEEEECSSHHHHSSHHHHHHHHHHHTTCEEEEECCCCSS--CBHHHHHHHHHHHHHTTCSEEEEEES
T ss_pred HHHHHHHHcCCCeEEEEECchHHhhccHHHHHHHHHHHcCCeEEEecCccCC--CCHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 3566777888899999986443333 46888999999989887533333333 45778888999999999999997655
Q ss_pred h--hhHHHHHHHH
Q 002371 228 S--RTGLMVFDVA 238 (930)
Q Consensus 228 ~--~~~~~~~~~a 238 (930)
+ -|..+++...
T Consensus 111 GsviD~AK~iA~~ 123 (407)
T 1vlj_A 111 GSVVDSAKAVAAG 123 (407)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHH
Confidence 4 5666666554
No 230
>2rin_A Putative glycine betaine-binding ABC transporter protein; type II binding protein, aromatic BOX, acetylcholine, protein binding; HET: ACH; 1.80A {Rhizobium meliloti} PDB: 2rej_A 2rf1_A 2reg_A* 3hcq_A
Probab=75.18 E-value=6.8 Score=40.61 Aligned_cols=65 Identities=14% Similarity=0.134 Sum_probs=39.9
Q ss_pred CCCChHHhhhC-----CCeEEEEeCchhHHH----HH-HhcCCCccceEeCCCHH----HHHHHHHcCCcEEEEccchhh
Q 002371 678 PIKGIDTLMTS-----NDRVGYQVGSFAENY----LI-EELSIPKSRLVALGSPE----EYAIALENRTVAAVVDERPYI 743 (930)
Q Consensus 678 ~i~sl~dL~~s-----~~~i~~~~~s~~~~~----l~-~~~~~~~~~~~~~~~~~----~~~~~l~~g~~~a~~~~~~~~ 743 (930)
.|+|++||.+. |+.+|+..|+....+ +. +.+++..-+++. .+.. +...++.+|+++++....+..
T Consensus 104 ~I~si~DLk~~~~~~~gk~~g~~~G~~~~~~~~~~l~~~~yGL~d~~~v~-~~~~~~~a~~~~A~~~g~~~v~~~w~p~~ 182 (298)
T 2rin_A 104 GIKDFKDIAAHKDELDGKIYGIEPGNDGNRLIIDMVEKGTFDLKGFEVVE-SSEQGMLAQVARAEKSGDPIVFLGWEPHP 182 (298)
T ss_dssp TCCBGGGSGGGHHHHTSEEECCSTTCHHHHHHHHHHHHTGGGCTTCEEEC-CCHHHHHHHHHHHHHTTCCCEEEEEESST
T ss_pred CCCCHHHHHHHHHHcCCeEECCCCChHHHHHHHHHhhhhcCCCCCceecc-CCHHHHHHHHHHHHHCCCCEEEEEeccCc
Confidence 78889998632 667888777654332 33 255653333443 2332 335677789999888876663
No 231
>1xs5_A 29 kDa protein, membrane lipoprotein TPN32; periplasmic binding protein, methionine, membrane protein; 1.85A {Treponema pallidum} SCOP: c.94.1.1
Probab=75.07 E-value=38 Score=33.61 Aligned_cols=36 Identities=11% Similarity=0.178 Sum_probs=26.8
Q ss_pred HHHHHHHCCCcccEEEEeCCCCCCCCCHHHHHHHHHcCcccEEE
Q 002371 495 FLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAV 538 (930)
Q Consensus 495 l~~l~~~ln~~~~~~~~~~~~~~~n~~~~~l~~~l~~g~~D~~~ 538 (930)
++...++.|++ +++++| .+|.....+|.+|++|+..
T Consensus 21 ~~~~~~~~Gl~--ve~~~f------~d~~~~n~AL~~G~iD~n~ 56 (241)
T 1xs5_A 21 AKEEVKKQHIE--LRIVEF------TNYVALNEAVMRGDILMNF 56 (241)
T ss_dssp HHHHHHTTTEE--EEEEEC------SCHHHHHHHHHHTSSSEEE
T ss_pred HHHHHHHcCCe--EEEEEc------CChHHHHHHHHcCCCCEec
Confidence 34456667855 555565 4599999999999999964
No 232
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=74.97 E-value=23 Score=29.24 Aligned_cols=97 Identities=12% Similarity=0.165 Sum_probs=65.1
Q ss_pred EEEccCChHHHHHHHHHHHHHcCCcEEEEEEecCCcCcchHHHHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHh
Q 002371 136 FVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVR 215 (930)
Q Consensus 136 ~fr~~p~~~~~~~ai~~~l~~~~w~~vaii~~d~~~g~~~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~ 215 (930)
+|-.-.+|......+..-++..| -+|.++|+|.+- .....-.+.+++.|..+-.. .+..||+.-+..+-
T Consensus 4 ifvvfssdpeilkeivreikrqg-vrvvllysdqde--krrrerleefekqgvdvrtv--------edkedfrenireiw 72 (162)
T 2l82_A 4 IFVVFSSDPEILKEIVREIKRQG-VRVVLLYSDQDE--KRRRERLEEFEKQGVDVRTV--------EDKEDFRENIREIW 72 (162)
T ss_dssp EEEEEESCHHHHHHHHHHHHHTT-CEEEEEECCSCH--HHHHHHHHHHHTTTCEEEEC--------CSHHHHHHHHHHHH
T ss_pred EEEEecCCHHHHHHHHHHHHhCC-eEEEEEecCchH--HHHHHHHHHHHHcCCceeee--------ccHHHHHHHHHHHH
Confidence 45555677777777888888877 567888987652 22233345677889886532 12678888887775
Q ss_pred c--CCceEEEEEcc--hhhHHHHHHHHHHcCC
Q 002371 216 M--MEARVIVVHGY--SRTGLMVFDVAQRLGM 243 (930)
Q Consensus 216 ~--~~~~viv~~~~--~~~~~~~~~~a~~~g~ 243 (930)
. -+-|++++... ..-...|+.+|++.|.
T Consensus 73 erypqldvvvivttddkewikdfieeakergv 104 (162)
T 2l82_A 73 ERYPQLDVVVIVTTDDKEWIKDFIEEAKERGV 104 (162)
T ss_dssp HHCTTCCEEEEEECCCHHHHHHHHHHHHHTTC
T ss_pred HhCCCCcEEEEEecCcHHHHHHHHHHHHhcCc
Confidence 4 34566665443 3667889999999885
No 233
>3cij_A UPF0100 protein AF_0094; archaeal periplasmic binding protein, unknown function, metal binding protein, transport protein; 1.07A {Archaeoglobus fulgidus} PDB: 2ons_A 2onk_E 2onr_A
Probab=74.55 E-value=48 Score=33.85 Aligned_cols=70 Identities=11% Similarity=0.003 Sum_probs=44.7
Q ss_pred HHHHHHHHHHC-CCcccEEEEeCCCCCCCCCHHHHHHHHHc-Cc-ccEEEecEEEec---CccceeeecccccccceEEE
Q 002371 492 IDVFLAAVRLL-PYAVPYKFIPYGDGHKNPTYSELINQITT-GV-FDAAVGDIAIVT---NRTKAVDFTQPYIESGLVVV 565 (930)
Q Consensus 492 ~dll~~l~~~l-n~~~~~~~~~~~~~~~n~~~~~l~~~l~~-g~-~D~~~~~~~~t~---~R~~~vdfs~p~~~~~~~~~ 565 (930)
-++++.+.++. |.++++.+ ++...++.++.. |. +|+.++.-.... .....++...||....++++
T Consensus 20 ~~l~~~F~~~~~gi~V~~~~---------~~s~~l~~~i~~~g~~~Dv~~~a~~~~~~~l~~~gl~~~~~~~~~~~lvl~ 90 (295)
T 3cij_A 20 KAFKRAFEEKHPNVEVQTEA---------AGSAATIRKVTELGRKADVIATADYTLIQKMMYPEFANWTIMFAKNQIVLA 90 (295)
T ss_dssp HHHHHHHHHHCTTCEEEEEE---------ECHHHHHHHHHTSCCCCSEEEESSTHHHHHHHTTTTCCCCEEEEECCEEEE
T ss_pred HHHHHHHHHHCCCceEEEEe---------CcHHHHHHHHHhCCCCCCEEEEcChhhHHHHHhCCCcceeeEEEeeeEEEE
Confidence 36777777774 87766544 346678899988 75 999876321101 11122345677888888888
Q ss_pred EeccC
Q 002371 566 APVRK 570 (930)
Q Consensus 566 v~~~~ 570 (930)
+++..
T Consensus 91 ~~~~~ 95 (295)
T 3cij_A 91 YRNDS 95 (295)
T ss_dssp ECTTS
T ss_pred EeCCC
Confidence 87665
No 234
>2gzm_A Glutamate racemase; enzyme, isomerase; HET: DGL; 1.99A {Bacillus anthracis}
Probab=73.85 E-value=18 Score=36.65 Aligned_cols=119 Identities=13% Similarity=0.108 Sum_probs=67.0
Q ss_pred HHHHHHHHhcCcEEEEccCChhhHHHHHHhhhcCCCcEEEeecCCCCCCCCCCCeEEEccCChHHHHHHHHHH-HHHcCC
Q 002371 81 IMGALQFMETDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEM-VSYFGW 159 (930)
Q Consensus 81 ~~~a~~li~~~v~aiiGp~~S~~~~av~~~~~~~~vp~is~~a~~~~ls~~~~~~~fr~~p~~~~~~~ai~~~-l~~~~w 159 (930)
.+.+..|.+.++.+|+-+-.+..+.++..+-+..++|+|.. .++.++. ++..+-
T Consensus 55 ~~~~~~L~~~g~d~iviaCNTas~~~l~~lr~~~~iPvigi-------------------------~ep~~~~A~~~~~~ 109 (267)
T 2gzm_A 55 WEMTEHLLDLNIKMLVIACNTATAVVLEEMQKQLPIPVVGV-------------------------IHPGSRTALKVTNT 109 (267)
T ss_dssp HHHHHHHHTTTCSEEEECCHHHHHHHHHHHHHHCSSCEEES-------------------------HHHHHHHHHHHCSS
T ss_pred HHHHHHHHHCCCCEEEEeCchhhHHHHHHHHHhCCCCEEee-------------------------cHHHHHHHHHccCC
Confidence 34445555569999998777766667777888889999962 1222222 233466
Q ss_pred cEEEEEEecCCcCcchHHHHHHHHHhc--CcEEEEEEecC-------CCCCC---ChhHHHHHHHHHhcCCceEEEEEcc
Q 002371 160 GEVIAIFNDDDQGRNGVTALGDKLAEI--RCKISYKSALP-------PDQSV---TETDVRNELVKVRMMEARVIVVHGY 227 (930)
Q Consensus 160 ~~vaii~~d~~~g~~~~~~~~~~l~~~--g~~i~~~~~~~-------~~~~~---~~~d~~~~l~~l~~~~~~viv~~~~ 227 (930)
++|+++..... -....+.+.+++. |+++.... -+ .+... ....+...+..+.+.++|+||+.|.
T Consensus 110 ~rIgVlaT~~T---~~~~~y~~~l~~~~~g~~v~~~~-~~~~v~~ie~g~~~~~~~~~~l~~~~~~l~~~~~d~iVLGCT 185 (267)
T 2gzm_A 110 YHVGIIGTIGT---VKSGAYEEALKSINNRVMVESLA-CPPFVELVESGNFESEMAYEVVRETLQPLKNTDIDTLILGCT 185 (267)
T ss_dssp CEEEEEECHHH---HHHTHHHHHHHHHCTTCEEEEEE-CTTHHHHHHTTCSSSHHHHHHHHHHHHHHHHSCCSEEEECST
T ss_pred CEEEEEEChHH---hccHHHHHHHHHhCCCCEEeccC-CHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEccc
Confidence 88888864321 1222466666666 66665321 11 11000 0223444555555567777777654
Q ss_pred h
Q 002371 228 S 228 (930)
Q Consensus 228 ~ 228 (930)
.
T Consensus 186 h 186 (267)
T 2gzm_A 186 H 186 (267)
T ss_dssp T
T ss_pred C
Confidence 4
No 235
>3cfz_A UPF0100 protein MJ1186; ABC transporter, binding protein, molybdate, tungstate, ligand, unknown function, transport protein; 1.70A {Methanocaldococcus jannaschii}
Probab=73.78 E-value=34 Score=34.98 Aligned_cols=70 Identities=10% Similarity=-0.025 Sum_probs=44.4
Q ss_pred HHHHHHHHHH-CCCcccEEEEeCCCCCCCCCHHHHHHHHHc-Cc-ccEEEecEEEec---CccceeeecccccccceEEE
Q 002371 492 IDVFLAAVRL-LPYAVPYKFIPYGDGHKNPTYSELINQITT-GV-FDAAVGDIAIVT---NRTKAVDFTQPYIESGLVVV 565 (930)
Q Consensus 492 ~dll~~l~~~-ln~~~~~~~~~~~~~~~n~~~~~l~~~l~~-g~-~D~~~~~~~~t~---~R~~~vdfs~p~~~~~~~~~ 565 (930)
-++++.+.++ -|.++++.+ ++-..++.++.. |. +|+.++.-.... .....++...||....++++
T Consensus 20 ~~l~~~F~~~~~gi~V~~~~---------~~s~~l~~~i~~~g~~~Dv~~~a~~~~~~~l~~~gl~~~~~~~~~~~lvi~ 90 (292)
T 3cfz_A 20 EEYEKMFEKEHPNVDVEREP---------AGSVACVRKIIDLGKKADILASADYSLIPQMMMPKYADWYVMFARNEIVLA 90 (292)
T ss_dssp HHHHHHHHHHCTTEEEEEEE---------ECHHHHHHHHHTSCCCCSEEEESSTTHHHHHTTTTTCSCCEEEEECCEEEE
T ss_pred HHHHHHHHHHCCCceEEEEe---------CCHHHHHHHHHhcCCCCcEEEECChHHHHHHHhCCCccceeeeEeccEEEE
Confidence 4677777777 486655543 446788899988 75 999876311101 11223345667788888888
Q ss_pred EeccC
Q 002371 566 APVRK 570 (930)
Q Consensus 566 v~~~~ 570 (930)
+++..
T Consensus 91 ~~~~~ 95 (292)
T 3cfz_A 91 YTDKS 95 (292)
T ss_dssp ECTTS
T ss_pred EcCCC
Confidence 87654
No 236
>2dwu_A Glutamate racemase; isomerase; HET: DGL; 1.60A {Bacillus anthracis}
Probab=72.77 E-value=22 Score=36.21 Aligned_cols=119 Identities=14% Similarity=0.134 Sum_probs=67.1
Q ss_pred HHHHHHHHhcCcEEEEccCChhhHHHHHHhhhcCCCcEEEeecCCCCCCCCCCCeEEEccCChHHHHHHHHHH-HHHcCC
Q 002371 81 IMGALQFMETDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEM-VSYFGW 159 (930)
Q Consensus 81 ~~~a~~li~~~v~aiiGp~~S~~~~av~~~~~~~~vp~is~~a~~~~ls~~~~~~~fr~~p~~~~~~~ai~~~-l~~~~w 159 (930)
.+.+..|.++++.+|+=+-.+..+.++-.+-+..++|+|.. .++.++. ++..+-
T Consensus 59 ~~~~~~L~~~g~d~IViACNTas~~~l~~lr~~~~iPVigi-------------------------iep~~~~A~~~~~~ 113 (276)
T 2dwu_A 59 FEMVEFLKQFPLKALVVACNTAAAATLAALQEALSIPVIGV-------------------------IHPGARAAIKVTKK 113 (276)
T ss_dssp HHHHHHHTTSCEEEEEECCHHHHHHHHHHHHHHCSSCEEES-------------------------HHHHHHHHHHHCSS
T ss_pred HHHHHHHHHCCCCEEEEeCCcHHHHHHHHHHHHCCCCEEec-------------------------cHHHHHHHHHhcCC
Confidence 44455555569999998777766667777778889999852 1112222 233466
Q ss_pred cEEEEEEecCCcCcchHHHHHHHHHhc--CcEEEEEEecCC-------CCC---CChhHHHHHHHHHhcCCceEEEEEcc
Q 002371 160 GEVIAIFNDDDQGRNGVTALGDKLAEI--RCKISYKSALPP-------DQS---VTETDVRNELVKVRMMEARVIVVHGY 227 (930)
Q Consensus 160 ~~vaii~~d~~~g~~~~~~~~~~l~~~--g~~i~~~~~~~~-------~~~---~~~~d~~~~l~~l~~~~~~viv~~~~ 227 (930)
++|+|+......-. ..+.+.+++. +.++... .-+. +.. .....+...+..++..++|+||+.|.
T Consensus 114 ~rIgVlaT~~T~~s---~~y~~~i~~~~~~~~v~~~-~~~~~v~~ve~g~~~~~~~~~~l~~~l~~l~~~~~D~IVLGCT 189 (276)
T 2dwu_A 114 GKIGVIGTVGTIQS---NMYEKALHELDTYLKVHSH-ACPTLATVVENRLEDTAYVTQQVKQALLPLTKEDIDTLILGCT 189 (276)
T ss_dssp SEEEEEECHHHHHT---THHHHHHHHHCTTCEEEEE-ECTTHHHHHHHSTTCHHHHHHHHHHHHHHHHTSCCSEEEECST
T ss_pred CeEEEEeChhhhhh---HHHHHHHHHhCCCCEEEee-eCHHHHHHHHcCCcCCHHHHHHHHHHHHHHHhcCCCEEEECCC
Confidence 88999875432111 1344444443 4555422 2221 100 01123555666676678888888665
Q ss_pred h
Q 002371 228 S 228 (930)
Q Consensus 228 ~ 228 (930)
.
T Consensus 190 h 190 (276)
T 2dwu_A 190 H 190 (276)
T ss_dssp T
T ss_pred C
Confidence 4
No 237
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A*
Probab=72.65 E-value=14 Score=39.64 Aligned_cols=87 Identities=10% Similarity=0.098 Sum_probs=63.6
Q ss_pred HHHHHHHHcCCcEEEEEEecCCcCc-chHHHHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCCceEEEEEcc
Q 002371 149 AIAEMVSYFGWGEVIAIFNDDDQGR-NGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY 227 (930)
Q Consensus 149 ai~~~l~~~~w~~vaii~~d~~~g~-~~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~ 227 (930)
.+.++++.+| +++.+|+....+.. +..+.+.+.|++.|+++..-..+.+. .+.+.+...++.+++.++|+||-.+.
T Consensus 31 ~l~~~l~~~g-~~~liVtd~~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~--p~~~~v~~~~~~~~~~~~d~IIavGG 107 (371)
T 1o2d_A 31 KRGNIIDLLG-KRALVVTGKSSSKKNGSLDDLKKLLDETEISYEIFDEVEEN--PSFDNVMKAVERYRNDSFDFVVGLGG 107 (371)
T ss_dssp HHGGGGGGTC-SEEEEEEESSGGGTSSHHHHHHHHHHHTTCEEEEEEEECSS--CBHHHHHHHHHHHTTSCCSEEEEEES
T ss_pred HHHHHHHHcC-CEEEEEECchHHhhccHHHHHHHHHHHcCCeEEEeCCccCC--CCHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 3555667778 99999987655443 46889999999999886544444444 45788999999999999999997655
Q ss_pred h--hhHHHHHHHH
Q 002371 228 S--RTGLMVFDVA 238 (930)
Q Consensus 228 ~--~~~~~~~~~a 238 (930)
+ -|...++...
T Consensus 108 Gsv~D~AK~iA~~ 120 (371)
T 1o2d_A 108 GSPMDFAKAVAVL 120 (371)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 4 5666666554
No 238
>2xwv_A Sialic acid-binding periplasmic protein SIAP; transport protein, trap, sugar transport; HET: SLB; 1.05A {Haemophilus influenzae} PDB: 2xxk_A* 2xa5_A* 2wyp_A* 2wx9_A* 2xwo_A* 2xwk_A* 2v4c_A* 2wyk_A* 2xwi_A* 3b50_A* 2cey_A 2cex_A
Probab=72.62 E-value=16 Score=37.94 Aligned_cols=60 Identities=12% Similarity=0.122 Sum_probs=43.8
Q ss_pred CCCCChHHhhhCCCeEEEEeCchhHHHHHHhcCCCccceEeCCCHHHHHHHHHcCCcEEEEccchhh
Q 002371 677 SPIKGIDTLMTSNDRVGYQVGSFAENYLIEELSIPKSRLVALGSPEEYAIALENRTVAAVVDERPYI 743 (930)
Q Consensus 677 ~~i~sl~dL~~s~~~i~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~ 743 (930)
.+|++++||. |++|.+.........+ +.++.. .++. ...|...+|++|.+|+.....+.+
T Consensus 133 ~pI~s~~Dlk--GlKiRv~~~~~~~~~~-~alGa~---pv~m-~~~Evy~ALq~G~vDg~~~~~~~~ 192 (312)
T 2xwv_A 133 RAINSIADMK--GLKLRVPNAATNLAYA-KYVGAS---PTPM-AFSEVYLALQTNAVDGQENPLAAV 192 (312)
T ss_dssp SCCCSGGGGT--TCEEEECSCHHHHHHH-HHHTCE---EEEC-CGGGHHHHHHTTSSSEEEEEHHHH
T ss_pred CCcCCHHHhC--CCEEEeCCCHHHHHHH-HHcCCe---eeec-CHHHHHHHHHcCCcceEeccHHHH
Confidence 6899999996 9999887544334555 455532 2333 567899999999999998876655
No 239
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=72.61 E-value=11 Score=39.01 Aligned_cols=79 Identities=15% Similarity=0.119 Sum_probs=60.8
Q ss_pred cEEEEEEec--CCcCcchHHHHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchhh-HHHHHH
Q 002371 160 GEVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRT-GLMVFD 236 (930)
Q Consensus 160 ~~vaii~~d--~~~g~~~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~~-~~~~~~ 236 (930)
++|+++..+ ++|.......+.+++++.|..+..... . .+.......++.+.+.++|.||+...... ....++
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~----~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~ 77 (313)
T 3m9w_A 3 VKIGMAIDDLRLERWQKDRDIFVKKAESLGAKVFVQSA-N----GNEETQMSQIENMINRGVDVLVIIPYNGQVLSNVVK 77 (313)
T ss_dssp CEEEEEESCCSSSTTHHHHHHHHHHHHHTSCEEEEEEC-T----TCHHHHHHHHHHHHHTTCSEEEEECSSTTSCHHHHH
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEECC-C----CCHHHHHHHHHHHHHcCCCEEEEeCCChhhhHHHHH
Confidence 578888864 788889999999999999998876432 2 23556667888888899999999865543 356788
Q ss_pred HHHHcCC
Q 002371 237 VAQRLGM 243 (930)
Q Consensus 237 ~a~~~g~ 243 (930)
++.+.|+
T Consensus 78 ~~~~~~i 84 (313)
T 3m9w_A 78 EAKQEGI 84 (313)
T ss_dssp HHHTTTC
T ss_pred HHHHCCC
Confidence 8888775
No 240
>2hpg_A ABC transporter, periplasmic substrate-binding protein; periplasmic binding protein, thermophilic proteins, trap- transport; HET: MSE; 1.90A {Thermotoga maritima}
Probab=72.39 E-value=8.9 Score=40.32 Aligned_cols=60 Identities=18% Similarity=0.138 Sum_probs=43.7
Q ss_pred CCCCChHHhhhCCCeEEEEeCchhHHHHHHhcCCCccceEeCCCHHHHHHHHHcCCcEEEEccchhh
Q 002371 677 SPIKGIDTLMTSNDRVGYQVGSFAENYLIEELSIPKSRLVALGSPEEYAIALENRTVAAVVDERPYI 743 (930)
Q Consensus 677 ~~i~sl~dL~~s~~~i~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~ 743 (930)
.+|++++||. |++|.+..+......+ +.++.. .++. ...|...+|++|.+|+.....+.+
T Consensus 148 ~pI~s~~DLk--G~KiRv~~~~~~~~~~-~alGa~---pv~m-~~~Evy~ALq~G~VDg~~~p~~~~ 207 (327)
T 2hpg_A 148 KPIRKPEDLN--GLRIRTPGAPAWQESI-RSLGAI---PVAV-NFGEIYTAVQTRAVDGAELTYANV 207 (327)
T ss_dssp SCCSSGGGGT--TCEEECCSSHHHHHHH-HHHTSE---EECC-CGGGHHHHHHTTSCSEEEECHHHH
T ss_pred CCCCCHHHHC--CCEEEeCCCHHHHHHH-HHcCCE---eeec-CHHHHHHHHHcCCeeEEECCHHHH
Confidence 6899999996 9999887544445555 555532 2322 667899999999999998865544
No 241
>2oho_A Glutamate racemase; isomerase; 2.25A {Streptococcus pyogenes m1 gas} PDB: 2ohg_A 2ohv_A*
Probab=71.60 E-value=11 Score=38.44 Aligned_cols=83 Identities=13% Similarity=0.060 Sum_probs=51.4
Q ss_pred HHHHHHHhcCcEEEEccCChhhHHHHHHhhhcCCCcEEEeecCCCCCCCCCCCeEEEccCChHHHHHHHHH-HHHHcCCc
Q 002371 82 MGALQFMETDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAE-MVSYFGWG 160 (930)
Q Consensus 82 ~~a~~li~~~v~aiiGp~~S~~~~av~~~~~~~~vp~is~~a~~~~ls~~~~~~~fr~~p~~~~~~~ai~~-~l~~~~w~ 160 (930)
+.+..|.+.++.+|+-+-.+..+.++..+-+..++|+|.. .++.++ .++..+-+
T Consensus 65 ~~~~~L~~~g~d~iviaCNTas~~~l~~lr~~~~iPvigi-------------------------~epa~~~A~~~~~~~ 119 (273)
T 2oho_A 65 ELVNFLLTQNVKMIVFACNTATAVAWEEVKAALDIPVLGV-------------------------VLPGASAAIKSTTKG 119 (273)
T ss_dssp HHHHHHHTTTCSEEEECCHHHHHHHHHHHHHHCSSCEEES-------------------------HHHHHHHHHHHCSSS
T ss_pred HHHHHHHHCCCCEEEEeCchHhHHHHHHHHHhCCCCEEec-------------------------cHHHHHHHHHhcCCC
Confidence 3444455559999998777776666777878889999962 122222 23345678
Q ss_pred EEEEEEecCCcCcchHHHHHHHHHhc--CcEEEE
Q 002371 161 EVIAIFNDDDQGRNGVTALGDKLAEI--RCKISY 192 (930)
Q Consensus 161 ~vaii~~d~~~g~~~~~~~~~~l~~~--g~~i~~ 192 (930)
+|+++..... -....+.+.+++. |+++..
T Consensus 120 rIgVlaT~~T---~~~~~y~~~l~~~~~g~~v~~ 150 (273)
T 2oho_A 120 QVGVIGTPMT---VASDIYRKKIQLLAPSIQVRS 150 (273)
T ss_dssp EEEEEECHHH---HHHTHHHHHHHHHCTTSEEEE
T ss_pred eEEEEECchh---hcchHHHHHHHHhCCCCEEEe
Confidence 9999875421 1123456666666 777653
No 242
>1r9l_A Glycine betaine-binding periplasmic protein; periplasmic binding protein, cation-PI interactions, tryptophan BOX, protein binding; 1.59A {Escherichia coli} SCOP: c.94.1.1 PDB: 1r9q_A*
Probab=71.36 E-value=13 Score=38.70 Aligned_cols=59 Identities=12% Similarity=0.069 Sum_probs=38.5
Q ss_pred CCCcceEEEecCcccccccEEeecCcceEEEEeHHHHHHHHHHCCCcccEEEEeCCCCCCCCCHHHHHHHHHcCcccEEE
Q 002371 459 NNGRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAV 538 (930)
Q Consensus 459 ~~g~~lrv~v~~~~~~~p~~~~~~~~~~~~G~~~dll~~l~~~ln~~~~~~~~~~~~~~~n~~~~~l~~~l~~g~~D~~~ 538 (930)
.++++++||... |.. .. +...+++.+.+.+|+++++... .+..-+...|.+|++|+..
T Consensus 5 ~~~~~I~ig~~~---~~e--------~~---~~~~i~~~~Le~~Gy~Ve~~~~--------~~~~~~~~Al~~G~iDi~~ 62 (309)
T 1r9l_A 5 GKGITVNPVQST---ITE--------ET---FQTLLVSRALEKLGYTVNKPSE--------VDYNVGYTSLASGDATFTA 62 (309)
T ss_dssp TTTCEECEEECS---CGG--------GH---HHHHHHHHHHHHTTCEECCCEE--------CCHHHHHHHHHHTSSCEEE
T ss_pred CCCceEEEeecC---ccH--------HH---HHHHHHHHHHHHcCCCeEEeec--------CchHHHHHHHhcCCceEEe
Confidence 355678887653 321 11 1235666777788988765421 3466788899999999986
Q ss_pred e
Q 002371 539 G 539 (930)
Q Consensus 539 ~ 539 (930)
.
T Consensus 63 e 63 (309)
T 1r9l_A 63 V 63 (309)
T ss_dssp E
T ss_pred c
Confidence 5
No 243
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=71.19 E-value=17 Score=34.07 Aligned_cols=65 Identities=12% Similarity=0.169 Sum_probs=51.2
Q ss_pred CcEEEEEEecCCcCcc---hHHHHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcC-CceEEEEEcc
Q 002371 159 WGEVIAIFNDDDQGRN---GVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMM-EARVIVVHGY 227 (930)
Q Consensus 159 w~~vaii~~d~~~g~~---~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~-~~~viv~~~~ 227 (930)
--+++||...|+-|+- ....+.+.+++.|+++.....++.+ .+++...+.++.+. ++|+||..+.
T Consensus 10 ~~~v~Ii~tGdE~g~i~D~n~~~l~~~L~~~G~~v~~~~iv~Dd----~~~i~~~l~~a~~~~~~DlVittGG 78 (172)
T 1mkz_A 10 PTRIAILTVSNRRGEEDDTSGHYLRDSAQEAGHHVVDKAIVKEN----RYAIRAQVSAWIASDDVQVVLITGG 78 (172)
T ss_dssp CCEEEEEEECSSCCGGGCHHHHHHHHHHHHTTCEEEEEEEECSC----HHHHHHHHHHHHHSSSCCEEEEESC
T ss_pred CCEEEEEEEeCCCCcccCccHHHHHHHHHHCCCeEeEEEEeCCC----HHHHHHHHHHHHhcCCCCEEEeCCC
Confidence 3589999987776642 3578899999999999888778765 78888888888765 6899998753
No 244
>3tmg_A Glycine betaine, L-proline ABC transporter, glycine/betaine/L-proline-binding protein...; ssgcid, structural genomics; 1.90A {Borrelia burgdorferi}
Probab=71.06 E-value=23 Score=36.18 Aligned_cols=90 Identities=13% Similarity=0.121 Sum_probs=50.7
Q ss_pred CCCChHHhhhCC-----CeEEEEeCchhH----HHHHHhcCCC-ccceEeCCCHH----HHHHHHHcCCcEEEEccchhh
Q 002371 678 PIKGIDTLMTSN-----DRVGYQVGSFAE----NYLIEELSIP-KSRLVALGSPE----EYAIALENRTVAAVVDERPYI 743 (930)
Q Consensus 678 ~i~sl~dL~~s~-----~~i~~~~~s~~~----~~l~~~~~~~-~~~~~~~~~~~----~~~~~l~~g~~~a~~~~~~~~ 743 (930)
.|+|++||.+.. ..+|+..|.... ..+ +.+++. .-+++. .+.. +...++.+|+.+++....+..
T Consensus 109 ~i~sisDL~~~~~~f~~~~~g~~~G~~~~~~~~~~l-~~yGL~~~~~~v~-~s~~~m~~~l~~A~~~g~~~v~~~w~p~~ 186 (280)
T 3tmg_A 109 PISSISELKGKGDKFKNKMIGIDAGAGTQIVTEQAL-NYYGLSKEYELVP-SSESVMLASLDSSIKRNEWILVPLWKPHW 186 (280)
T ss_dssp CCCBGGGGTTCGGGGTTEEECCSTTCHHHHHHHHHH-HHTTCTTTSEEEC-CCHHHHHHHHHHHHHTTCCCCEEEEESCT
T ss_pred CCCCHHHHHhhHHHcCCeEEecCCCchhHHHHHHHH-HhcCCCCceEEEe-CCHHHHHHHHHHHHHCCCCEEEEEecCch
Confidence 789999997432 236666665322 233 456764 233332 2333 334778889998887766655
Q ss_pred HHHHhcCcceEEeCCc---c-ccCccEEEecCC
Q 002371 744 DLFLSDHCQFSVRGQE---F-TKSGWGFAFPRD 772 (930)
Q Consensus 744 ~~~~~~~~~l~~~~~~---~-~~~~~~~~~~k~ 772 (930)
..- + .+++++..+ + ..+....+++++
T Consensus 187 ~~~--~-~~l~~LeD~k~~~~p~~~~~~vvr~~ 216 (280)
T 3tmg_A 187 AFS--R-YDIKFLDDPDLIMGGIESVHTLVRLG 216 (280)
T ss_dssp HHH--H-SCEEECBCTTCTTCSSEEEEEEEETT
T ss_pred hhh--c-CCeEEecCccccCCCcceEEEEeccc
Confidence 442 1 257777543 2 223345566666
No 245
>3cfx_A UPF0100 protein MA_0280; ABC transporter, binding protein, molybdate, tungstate, LIGA unknown function, transport protein; 1.60A {Methanosarcina acetivorans}
Probab=71.01 E-value=75 Score=32.36 Aligned_cols=70 Identities=9% Similarity=0.008 Sum_probs=44.6
Q ss_pred HHHHHHHHHH-CCCcccEEEEeCCCCCCCCCHHHHHHHHHc-Cc-ccEEEecEEE--e-cCccceeeecccccccceEEE
Q 002371 492 IDVFLAAVRL-LPYAVPYKFIPYGDGHKNPTYSELINQITT-GV-FDAAVGDIAI--V-TNRTKAVDFTQPYIESGLVVV 565 (930)
Q Consensus 492 ~dll~~l~~~-ln~~~~~~~~~~~~~~~n~~~~~l~~~l~~-g~-~D~~~~~~~~--t-~~R~~~vdfs~p~~~~~~~~~ 565 (930)
-++++.+.++ -|.++++.+ ++-..++.++.. |. +|+.++.-.. . ......++...||....++++
T Consensus 20 ~~l~~~F~~~~~gi~V~~~~---------~~s~~l~~~i~~~g~~~Dv~~~a~~~~~~~l~~~gl~~~~~~~~~~~l~i~ 90 (296)
T 3cfx_A 20 EELEAEFEAQHPGVDVQREA---------AGSAQSVRKITELGKKADVLASADYALIPSLMVPEYADWYAAFARNQMILA 90 (296)
T ss_dssp HHHHHHHHHHSTTCEEEEEE---------CCHHHHHHHHHTSCCCCSEEEESSTTHHHHHTTTTTCSCEEEEEECCEEEE
T ss_pred HHHHHHHHHHCCCceEEEEe---------CchHHHHHHHHhCCCCCcEEEECChhhHHHHHhCCCccceeeeEeeeEEEE
Confidence 3677778777 486655533 456788898888 75 9998763211 1 112223345667788888888
Q ss_pred EeccC
Q 002371 566 APVRK 570 (930)
Q Consensus 566 v~~~~ 570 (930)
+++..
T Consensus 91 ~~~~~ 95 (296)
T 3cfx_A 91 YTNES 95 (296)
T ss_dssp ECTTS
T ss_pred EeCCC
Confidence 87654
No 246
>3uhj_A Probable glycerol dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.34A {Sinorhizobium meliloti}
Probab=69.68 E-value=5.5 Score=42.99 Aligned_cols=82 Identities=7% Similarity=0.105 Sum_probs=55.2
Q ss_pred HHHHHHHHcCCcEEEEEEecCCcCcchHHHHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCCceEEEEEcch
Q 002371 149 AIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS 228 (930)
Q Consensus 149 ai~~~l~~~~w~~vaii~~d~~~g~~~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~ 228 (930)
.+.++++.+| +++.+|+....+.. ..+.+.+.|++ |+++++ ..++.. .+.+.+...++.+++.++|+||-.+.+
T Consensus 43 ~l~~~l~~~g-~r~liVtd~~~~~~-~~~~v~~~L~~-g~~~~~-~~~~~~--p~~~~v~~~~~~~~~~~~d~IIavGGG 116 (387)
T 3uhj_A 43 KLAAYLAPLG-KRALVLIDRVLFDA-LSERIGKSCGD-SLDIRF-ERFGGE--CCTSEIERVRKVAIEHGSDILVGVGGG 116 (387)
T ss_dssp TTHHHHGGGC-SEEEEEECTTTHHH-HHHHC-------CCEEEE-EECCSS--CSHHHHHHHHHHHHHHTCSEEEEESSH
T ss_pred HHHHHHHHcC-CEEEEEECchHHHH-HHHHHHHHHHc-CCCeEE-EEcCCC--CCHHHHHHHHHHHhhcCCCEEEEeCCc
Confidence 3566778888 99999986655543 67788888998 988844 345555 557888888999999999999987766
Q ss_pred --hhHHHHHH
Q 002371 229 --RTGLMVFD 236 (930)
Q Consensus 229 --~~~~~~~~ 236 (930)
-|..+++.
T Consensus 117 s~~D~AK~iA 126 (387)
T 3uhj_A 117 KTADTAKIVA 126 (387)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 45555554
No 247
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=68.99 E-value=9.7 Score=39.26 Aligned_cols=80 Identities=10% Similarity=0.079 Sum_probs=59.5
Q ss_pred cEEEEEEec--CCcCcchHHHHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCCceEEEEEcch-hhHHHHHH
Q 002371 160 GEVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS-RTGLMVFD 236 (930)
Q Consensus 160 ~~vaii~~d--~~~g~~~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~-~~~~~~~~ 236 (930)
++++++..+ ++|.......+.+++++.|..+.... ... .+.......++.+.+.++|.||+.... ......++
T Consensus 5 ~~I~~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~--~~~--~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~ 80 (305)
T 3g1w_A 5 ETYMMITFQSGMDYWKRCLKGFEDAAQALNVTVEYRG--AAQ--YDIQEQITVLEQAIAKNPAGIAISAIDPVELTDTIN 80 (305)
T ss_dssp CEEEEEESSTTSTHHHHHHHHHHHHHHHHTCEEEEEE--CSS--SCHHHHHHHHHHHHHHCCSEEEECCSSTTTTHHHHH
T ss_pred ceEEEEEccCCChHHHHHHHHHHHHHHHcCCEEEEeC--CCc--CCHHHHHHHHHHHHHhCCCEEEEcCCCHHHHHHHHH
Confidence 678888854 67778888999999999999987532 222 235666777888888899999987644 33456788
Q ss_pred HHHHcCC
Q 002371 237 VAQRLGM 243 (930)
Q Consensus 237 ~a~~~g~ 243 (930)
++.+.|+
T Consensus 81 ~~~~~~i 87 (305)
T 3g1w_A 81 KAVDAGI 87 (305)
T ss_dssp HHHHTTC
T ss_pred HHHHCCC
Confidence 8888775
No 248
>4edp_A ABC transporter, substrate-binding protein; clostridium PERF ATCC 13124, center for structural genomics of infectious DI csgid; 1.85A {Clostridium perfringens}
Probab=68.99 E-value=47 Score=34.57 Aligned_cols=83 Identities=7% Similarity=-0.125 Sum_probs=54.1
Q ss_pred eCCCHHHHHHHHHcCCcEEEEccchhhHHHHhcCcceEEeCC--ccccCccEEEecCCCcchhHHHHHHHhccccccHHH
Q 002371 717 ALGSPEEYAIALENRTVAAVVDERPYIDLFLSDHCQFSVRGQ--EFTKSGWGFAFPRDSPLAIDMSTAILTLSENGELQR 794 (930)
Q Consensus 717 ~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~k~spl~~~~n~~i~~l~e~G~~~~ 794 (930)
...+..+..+.+.+|++++.+.....+..+.....++.++-+ -......+++++++++-.+.--+.|..+........
T Consensus 215 ~~~~~~~~~~~f~~G~~a~~~~~~~~~~~~~~~~~~~~~~~P~~g~~~~~~~~~i~~~s~~~~~A~~fi~~l~s~e~q~~ 294 (351)
T 4edp_A 215 TYSKSSDLANMFSNGEIVAAVASDFAFGTISKAKPEVINVIPESGTYLNFNTININKNSKNKDLAYEFINYALSKEVQEK 294 (351)
T ss_dssp EECCHHHHHHHHHTTSCSEEEEEHHHHHHHHHHCTTCEEECCTTCCBEEEEEEEEBTTCSCHHHHHHHHHHHTSHHHHHH
T ss_pred ccCChHHHHHHHHcCCEEEEecCcHHHHHHHhcCCCeeeeCCCCCcccceeeEEEECCCCCHHHHHHHHHHhcCHHHHHH
Confidence 346778889999999998888765555555554444443321 111224578999999977777777777776554555
Q ss_pred HHHhh
Q 002371 795 IHDKW 799 (930)
Q Consensus 795 ~~~~~ 799 (930)
+.+..
T Consensus 295 ~~~~~ 299 (351)
T 4edp_A 295 TAKAL 299 (351)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 55443
No 249
>3ist_A Glutamate racemase; structural genomics, cell WALL biogenesis/degradation, isomerase, peptidoglycan synthesis; HET: MSE; 1.65A {Listeria monocytogenes} PDB: 3hfr_A* 3isv_A*
Probab=67.30 E-value=20 Score=36.36 Aligned_cols=119 Identities=8% Similarity=0.077 Sum_probs=67.3
Q ss_pred HHHHHHHhcCcEEEEccCChhhHHHHHHhhhcCCCcEEEeecCCCCCCCCCCCeEEEccCChHHHHH-HHHHHHHHcCCc
Q 002371 82 MGALQFMETDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMS-AIAEMVSYFGWG 160 (930)
Q Consensus 82 ~~a~~li~~~v~aiiGp~~S~~~~av~~~~~~~~vp~is~~a~~~~ls~~~~~~~fr~~p~~~~~~~-ai~~~l~~~~w~ 160 (930)
+.+..|.+.|+.+|+=+-.+..+.++-.+-+...+|+|.. .+ ++...++..+-+
T Consensus 58 ~~~~~L~~~g~~~IVIACNTa~~~al~~lr~~~~iPvigi-------------------------i~pa~~~A~~~~~~~ 112 (269)
T 3ist_A 58 EMTNFLVDRGIKMLVIACNTATAAALYDIREKLDIPVIGV-------------------------IQPGSRAALKATRNN 112 (269)
T ss_dssp HHHHHHHHTTCSEEEECCHHHHHHHHHHHHHHCSSCEEES-------------------------HHHHHHHHHHHCSSS
T ss_pred HHHHHHHHCCCCEEEEeCCCccHHHHHHHHHhcCCCEEee-------------------------cHHHHHHHHHHcCCC
Confidence 4445566669999998777777666777888889999962 11 122223445667
Q ss_pred EEEEEEecCCcCcchHHHHHHHHHhcC--cEEEEEEe------cCCCCCC---ChhHHHHHHHHHhcCCceEEEEEcch
Q 002371 161 EVIAIFNDDDQGRNGVTALGDKLAEIR--CKISYKSA------LPPDQSV---TETDVRNELVKVRMMEARVIVVHGYS 228 (930)
Q Consensus 161 ~vaii~~d~~~g~~~~~~~~~~l~~~g--~~i~~~~~------~~~~~~~---~~~d~~~~l~~l~~~~~~viv~~~~~ 228 (930)
+|+++..... -....+.+.+++.| .++..... +..+... ....+...++.+++.++|.||+.|..
T Consensus 113 ~IGVLaT~~T---i~s~~y~~~i~~~~~~~~v~~~~~~~lV~~vE~g~~~~~~~~~~l~~~l~~l~~~g~D~iVLGCTh 188 (269)
T 3ist_A 113 KIGVLGTLGT---VESMAYPTALKGLNRRVEVDSLACPKFVSVVESGEYKSAIAKKVVAESLLPLKSTKIDTVILGCTH 188 (269)
T ss_dssp EEEEEECHHH---HHHTHHHHHHHHHCTTCEEEEEECHHHHHHHHTTCTTSHHHHHHHHHHHGGGGGSCCCEEEECSTT
T ss_pred eEEEEeccch---hhHHHHHHHHHHhCCCCEEeccCCHHHHHHHHcCCCCCHHHHHHHHHHHHHHHhCCCCEEEECCCC
Confidence 8888875421 12234455555543 34332110 1111000 12234555666666788888886655
No 250
>1nh8_A ATP phosphoribosyltransferase; prtase, de novo His biosynthesis, PRPP, structural genomics, PSI, protei structure initiative; HET: AMP HIS; 1.80A {Mycobacterium tuberculosis H37RV} SCOP: c.94.1.1 d.58.5.3 PDB: 1nh7_A*
Probab=65.66 E-value=20 Score=36.57 Aligned_cols=101 Identities=10% Similarity=0.021 Sum_probs=62.6
Q ss_pred CCCChHHhhhCCCeEEEEeCchhHHHHHHhcCCCccceEeCC-CHHHHHHHHHcCCcEEEEccchhhHHHHhcCcceEEe
Q 002371 678 PIKGIDTLMTSNDRVGYQVGSFAENYLIEELSIPKSRLVALG-SPEEYAIALENRTVAAVVDERPYIDLFLSDHCQFSVR 756 (930)
Q Consensus 678 ~i~sl~dL~~s~~~i~~~~~s~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~~~l~~~ 756 (930)
.+++++||. +++|+...-...+.||. +.+.. .+++... +.|- +..-|-.|++++-.....-+.++ +|.++
T Consensus 120 ~~~~~~~l~--~~RIATkYp~l~r~yf~-~~gi~-~~Ii~l~GsvE~---aP~~GlADaIvDiVsTG~TLraN--gL~~i 190 (304)
T 1nh8_A 120 RNWTTADLA--GMRIATAYPNLVRKDLA-TKGIE-ATVIRLDGAVEI---SVQLGVADAIADVVGSGRTLSQH--DLVAF 190 (304)
T ss_dssp SCCCGGGGT--TCEEEESCHHHHHHHHH-HHTCC-CEEEECSSCCTH---HHHTTSCSEEEEEESSSHHHHHT--TEEEE
T ss_pred CcCChHHhC--CCEEEeCcHHHHHHHHH-HCCCe-EEEEECCCceee---ccCCCcccEEEEEeCChHHHHHC--cCEEc
Confidence 455778884 88999988888999995 45555 4555444 4442 23448889999877666655444 47777
Q ss_pred CCccccCccEEEecCCCc-c--hhHHHHHHHhcc
Q 002371 757 GQEFTKSGWGFAFPRDSP-L--AIDMSTAILTLS 787 (930)
Q Consensus 757 ~~~~~~~~~~~~~~k~sp-l--~~~~n~~i~~l~ 787 (930)
++.+....-.++..|.+. . .+.++..+.++.
T Consensus 191 ~e~I~~SsA~LI~n~~s~~~~k~~~i~~l~~rl~ 224 (304)
T 1nh8_A 191 GEPLCDSEAVLIERAGTDGQDQTEARDQLVARVQ 224 (304)
T ss_dssp EEEEEEECEEEEEEC--------CHHHHHHHHHH
T ss_pred ccEEEEEEEEEEEccccchhhhHHHHHHHHHHHH
Confidence 555555566677777752 2 235666665554
No 251
>2czl_A Hypothetical protein TTHA1568; conserved hypothetical protein, extremely thermoph bacteria, structural genomics, NPPSFA; HET: CME TLA XPE; 1.55A {Thermus thermophilus} SCOP: c.94.1.1 PDB: 2dbp_A* 3a3u_A*
Probab=65.41 E-value=14 Score=37.40 Aligned_cols=59 Identities=12% Similarity=0.022 Sum_probs=39.7
Q ss_pred hHHhhhCCCeEEEEeCchhHHHHHHhcCCCccceEeCCCHHHHHHHHHcCCcEEEEcc-chhhH
Q 002371 682 IDTLMTSNDRVGYQVGSFAENYLIEELSIPKSRLVALGSPEEYAIALENRTVAAVVDE-RPYID 744 (930)
Q Consensus 682 l~dL~~s~~~i~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~-~~~~~ 744 (930)
++||. |++|++..++....++.+.+- ...+++.. ...+...++.+|++||.+.. .+.+.
T Consensus 91 ~~dLk--Gk~Ia~~~~~~~~~~ll~~ll-~~~~~~~~-~~~~~~~al~~G~vDa~~~~~ep~~~ 150 (272)
T 2czl_A 91 LQALE--GLRVAVPGRHTTAYFLLSLYA-QGFVPVEV-RYDRILPMVAQGEVEAGLIIHESRFT 150 (272)
T ss_dssp CSCCT--TCEEEESCTTSHHHHHHHHHC-SSCEEEEC-CGGGHHHHHHTTSSSEEEECTTHHHH
T ss_pred hHHhC--CCEEEeCCCCchHHHHHHHHh-ccCceeec-ChHHHHHHHHCCCCCEEEEecchhhh
Confidence 67885 999999876655555434331 11244433 45588999999999999875 66665
No 252
>2jfq_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: DGL; 2.15A {Staphylococcus aureus}
Probab=65.29 E-value=45 Score=34.02 Aligned_cols=120 Identities=13% Similarity=0.107 Sum_probs=65.2
Q ss_pred HHHHHHHHhcCcEEEEccCChhhHHHHHHhhhcCCCcEEEeecCCCCCCCCCCCeEEEccCChHHHHHHHHH-HHHHcCC
Q 002371 81 IMGALQFMETDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAE-MVSYFGW 159 (930)
Q Consensus 81 ~~~a~~li~~~v~aiiGp~~S~~~~av~~~~~~~~vp~is~~a~~~~ls~~~~~~~fr~~p~~~~~~~ai~~-~l~~~~w 159 (930)
.+.+..|.+.++.+|+=+-.+..+.++..+-+..++|+|... ++.++ .++..+-
T Consensus 74 ~~~~~~L~~~g~d~IVIaCNTas~~~l~~lr~~~~iPVigi~-------------------------e~a~~~A~~~~~~ 128 (286)
T 2jfq_A 74 VEIARKLMEFDIKMLVIACNTATAVALEYLQKTLSISVIGVI-------------------------EPGARTAIMTTRN 128 (286)
T ss_dssp HHHHHHHTTSCCSEEEECCHHHHHHHHHHHHHHCSSEEEESH-------------------------HHHHHHHHHHCSS
T ss_pred HHHHHHHHHCCCCEEEEeCCchhHHHHHHHHHhCCCCEEecc-------------------------HHHHHHHHHhcCC
Confidence 344445555599999987777766667777788899999631 22222 2233466
Q ss_pred cEEEEEEecCCcCcchHHHHHHHHHhc--CcEEEEEEe------cCCCCCCC----hhHHHHHHHHHhcCCceEEEEEcc
Q 002371 160 GEVIAIFNDDDQGRNGVTALGDKLAEI--RCKISYKSA------LPPDQSVT----ETDVRNELVKVRMMEARVIVVHGY 227 (930)
Q Consensus 160 ~~vaii~~d~~~g~~~~~~~~~~l~~~--g~~i~~~~~------~~~~~~~~----~~d~~~~l~~l~~~~~~viv~~~~ 227 (930)
++|+|+..... -....+.+.+++. +.++..... +..+.... ...+...+..+++.++|+||+.|.
T Consensus 129 ~rIgVLaT~~T---~~~~~y~~~l~~~~~~~~v~~~~~~~~v~~ie~g~~~~~~~~~~~l~~~~~~l~~~g~D~IVLGCT 205 (286)
T 2jfq_A 129 QNVLVLGTEGT---IKSEAYRTHIKRINPHVEVHGVACPGFVPLVEQMRYSDPTITSIVIHQTLKRWRNSESDTVILGCT 205 (286)
T ss_dssp SEEEEEECHHH---HHHTHHHHHHHHHCTTCEEEEEECTTHHHHHHTTCTTCHHHHHHHHHHHHGGGTTCSCSEEEEESS
T ss_pred CEEEEEeChHH---hcchHHHHHHHHhCCCCEEEecCCHHHHHHHHcCCCCCchhHHHHHHHHHHHHHhCCCCEEEEcCc
Confidence 78888874321 1122355556555 555542111 11110000 122444555555567888888665
Q ss_pred h
Q 002371 228 S 228 (930)
Q Consensus 228 ~ 228 (930)
.
T Consensus 206 h 206 (286)
T 2jfq_A 206 H 206 (286)
T ss_dssp S
T ss_pred C
Confidence 4
No 253
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=65.20 E-value=19 Score=37.72 Aligned_cols=88 Identities=7% Similarity=-0.085 Sum_probs=58.4
Q ss_pred HHHHHHcCCcEEEEEEec----CCcCcchHHHHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCCceEEEEEc
Q 002371 151 AEMVSYFGWGEVIAIFND----DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHG 226 (930)
Q Consensus 151 ~~~l~~~~w~~vaii~~d----~~~g~~~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~ 226 (930)
++-++...-+.|+++..+ ++|.......+.+++++.|..+..... . .+...-...++.+.+.+.|.||+..
T Consensus 53 a~~l~~~~~~~Igvi~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~----~~~~~~~~~~~~l~~~~vdgiIi~~ 127 (338)
T 3dbi_A 53 ARNLSAKSTQTLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQLLLADG-K----HSAEEERQAIQYLLDLRCDAIMIYP 127 (338)
T ss_dssp -------CCSEEEEEECTTTTSTTHHHHHHHHHHHHHHHTTCEEEEEEC-T----TSHHHHHHHHHHHHHTTCSEEEECC
T ss_pred HHHhhhCCCCEEEEEecCCcccChhHHHHHHHHHHHHHHCCCEEEEEeC-C----CChHHHHHHHHHHHhCCCCEEEEeC
Confidence 333444456789999865 556677788999999999998875431 1 2244555678888889999999976
Q ss_pred chhhHHHHHHHHHHcCC
Q 002371 227 YSRTGLMVFDVAQRLGM 243 (930)
Q Consensus 227 ~~~~~~~~~~~a~~~g~ 243 (930)
.......+...+.+.|.
T Consensus 128 ~~~~~~~~~~~~~~~~i 144 (338)
T 3dbi_A 128 RFLSVDEIDDIIDAHSQ 144 (338)
T ss_dssp SSSCHHHHHHHHHHCSS
T ss_pred CCCChHHHHHHHHcCCC
Confidence 55444556666777664
No 254
>1zuw_A Glutamate racemase 1; (R)-glutamate, peptidoglycan biosynthesi isomerase; HET: DGL; 1.75A {Bacillus subtilis}
Probab=64.83 E-value=44 Score=33.83 Aligned_cols=121 Identities=10% Similarity=0.109 Sum_probs=69.8
Q ss_pred HHHHHHHHHh-cCcEEEEccCChhhHHHHHHhhhcCCCcEEEeecCCCCCCCCCCCeEEEccCChHHHHHHHHHH-HHHc
Q 002371 80 SIMGALQFME-TDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEM-VSYF 157 (930)
Q Consensus 80 a~~~a~~li~-~~v~aiiGp~~S~~~~av~~~~~~~~vp~is~~a~~~~ls~~~~~~~fr~~p~~~~~~~ai~~~-l~~~ 157 (930)
..+.+..|.+ .++.+|+=+-.+..+.++..+-+..++|+|.. .++.++. ++..
T Consensus 54 ~~~~~~~L~~~~g~d~iViACNTas~~~l~~lr~~~~iPVigi-------------------------iepa~~~A~~~~ 108 (272)
T 1zuw_A 54 TWELTNYLLENHHIKMLVIACNTATAIALDDIQRSVGIPVVGV-------------------------IQPGARAAIKVT 108 (272)
T ss_dssp HHHHHHHHHHHSCCSEEEECCHHHHHHHHHHHHHHCSSCEEES-------------------------HHHHHHHHHHHC
T ss_pred HHHHHHHHHhhcCCCEEEEeCchhhHHHHHHHHHHCCCCEEcc-------------------------cHHHHHHHHHhc
Confidence 4456667777 79999998777776667777778889999963 1222222 2334
Q ss_pred CCcEEEEEEecCCcCcchHHHHHHHHHhc--CcEEEEEEe------cCCCCCC---ChhHHHHHHHHHhcCCceEEEEEc
Q 002371 158 GWGEVIAIFNDDDQGRNGVTALGDKLAEI--RCKISYKSA------LPPDQSV---TETDVRNELVKVRMMEARVIVVHG 226 (930)
Q Consensus 158 ~w~~vaii~~d~~~g~~~~~~~~~~l~~~--g~~i~~~~~------~~~~~~~---~~~d~~~~l~~l~~~~~~viv~~~ 226 (930)
+-++|+++.....- ....+.+.+++. |.++..... +..+... ....+...+..++..++|+||+.|
T Consensus 109 ~~~rIgVlaT~~T~---~s~~y~~~i~~~~~~~~v~~~~~~~~v~~ve~g~~~~~~~~~~l~~~l~~l~~~~~D~iVLGC 185 (272)
T 1zuw_A 109 DNQHIGVIGTENTI---KSNAYEEALLALNPDLKVENLACPLLVPFVESGKFLDQTADEIVKTSLYPLKDTSIDSLILGC 185 (272)
T ss_dssp SSSEEEEEECHHHH---HTTHHHHHHHHHCTTCEEEEEECTTHHHHHTSCCCCHHHHHHHHHHHHHHHHHSCCSEEEEES
T ss_pred CCCEEEEEEChhhh---hhhHHHHHHHHhCCCCEEEeccCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHhcCCCEEEECc
Confidence 66788888754211 112244555544 556542211 1111000 023345556667667888888876
Q ss_pred ch
Q 002371 227 YS 228 (930)
Q Consensus 227 ~~ 228 (930)
..
T Consensus 186 Th 187 (272)
T 1zuw_A 186 TH 187 (272)
T ss_dssp TT
T ss_pred cC
Confidence 55
No 255
>3cvg_A Putative metal binding protein; PSI-II, NYSGXRC, periplasmic, structural GENO protein structure initiative; 1.97A {Coccidioides immitis}
Probab=64.67 E-value=61 Score=33.06 Aligned_cols=73 Identities=11% Similarity=0.208 Sum_probs=47.6
Q ss_pred EEeHHHHHHHHHH---C---CCcccEEEEeCCCCCCCCCHHHHHHHHHcCcccEEEecEEEecCcc--ceeee-cc-ccc
Q 002371 489 GYCIDVFLAAVRL---L---PYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGDIAIVTNRT--KAVDF-TQ-PYI 558 (930)
Q Consensus 489 G~~~dll~~l~~~---l---n~~~~~~~~~~~~~~~n~~~~~l~~~l~~g~~D~~~~~~~~t~~R~--~~vdf-s~-p~~ 558 (930)
.+..++++.+.++ . + ++++... ++...++.+|.+|++|+++..-....+.. ..+.+ .. ++.
T Consensus 33 ~~lp~ll~~F~~~~~~~~~P~--v~v~l~~-------~~s~~l~~~l~~G~~Dl~i~~~~~~~~~l~~~~~~~~~~~~l~ 103 (294)
T 3cvg_A 33 GLVKELADAFIKSKVDSGSAP--FKVAWYK-------SDTTVTINYLKDGIVDVGITYSPVAERISIKHGISESPSYYAF 103 (294)
T ss_dssp THHHHHHHHHHHHHHSCC-----CEEEEEE-------CCHHHHHHHHHTTSCSEEEESCHHHHHHHHHTTSBCSSCEEEE
T ss_pred HHHHHHHHHHHhhhcccCCCC--eEEEEEe-------CCHHHHHHHHHcCCCcEEEEcCchhhhHHHhCCcccceeeeEE
Confidence 3456788889888 7 5 4455554 66889999999999999876321111100 01112 24 788
Q ss_pred ccceEEEEeccC
Q 002371 559 ESGLVVVAPVRK 570 (930)
Q Consensus 559 ~~~~~~~v~~~~ 570 (930)
...+++++|...
T Consensus 104 ~d~lvlv~~~~h 115 (294)
T 3cvg_A 104 RDHFMLIGPPSN 115 (294)
T ss_dssp EEEEEEEECTTC
T ss_pred eccEEEEecCCC
Confidence 889999988765
No 256
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=63.27 E-value=67 Score=31.39 Aligned_cols=135 Identities=17% Similarity=0.235 Sum_probs=82.9
Q ss_pred EEEEEecCCCChHHHHHHHHHHHhc-CcEEEEccCChhhHHHHHHhhhcCCCcEEEeecCCCCCCCCCCCeEEEccCChH
Q 002371 66 LSITMHDAKFNGFLSIMGALQFMET-DTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDL 144 (930)
Q Consensus 66 l~l~~~D~~~~~~~a~~~a~~li~~-~v~aiiGp~~S~~~~av~~~~~~~~vp~is~~a~~~~ls~~~~~~~fr~~p~~~ 144 (930)
.++.+.|. +-..++..+++++.+ ++++||.-..+ +.. +-+..++|+|... .+..
T Consensus 39 ~~I~vi~~--~le~av~~a~~~~~~~~~dVIISRGgt--a~~---Lr~~~~iPVV~I~------------------vs~~ 93 (225)
T 2pju_A 39 ANITPIQL--GFEKAVTYIRKKLANERCDAIIAAGSN--GAY---LKSRLSVPVILIK------------------PSGY 93 (225)
T ss_dssp CEEEEECC--CHHHHHHHHHHHTTTSCCSEEEEEHHH--HHH---HHTTCSSCEEEEC------------------CCHH
T ss_pred ceEEEecC--cHHHHHHHHHHHHhcCCCeEEEeCChH--HHH---HHhhCCCCEEEec------------------CCHH
Confidence 44555553 457788888888775 69999963322 222 2344689999642 2233
Q ss_pred HHHHHHHHHHHHcCCcEEEEEEecCCcCcchHHHHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCCceEEEE
Q 002371 145 YLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVV 224 (930)
Q Consensus 145 ~~~~ai~~~l~~~~w~~vaii~~d~~~g~~~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~ 224 (930)
...+++... +.++ ++++++...+. ....+.+.+.+ |.++.... +. +.++....+.++++.+.++||-
T Consensus 94 Dil~aL~~a-~~~~-~kIavVg~~~~--~~~~~~i~~ll---~~~i~~~~-~~-----~~ee~~~~i~~l~~~G~~vVVG 160 (225)
T 2pju_A 94 DVLQFLAKA-GKLT-SSIGVVTYQET--IPALVAFQKTF---NLRLDQRS-YI-----TEEDARGQINELKANGTEAVVG 160 (225)
T ss_dssp HHHHHHHHT-TCTT-SCEEEEEESSC--CHHHHHHHHHH---TCCEEEEE-ES-----SHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHH-HhhC-CcEEEEeCchh--hhHHHHHHHHh---CCceEEEE-eC-----CHHHHHHHHHHHHHCCCCEEEC
Confidence 334444443 2334 58888875443 12344555554 55655432 22 3679999999999999999775
Q ss_pred EcchhhHHHHHHHHHHcCCC
Q 002371 225 HGYSRTGLMVFDVAQRLGMM 244 (930)
Q Consensus 225 ~~~~~~~~~~~~~a~~~g~~ 244 (930)
.+. ..+.|++.||.
T Consensus 161 ~~~------~~~~A~~~Gl~ 174 (225)
T 2pju_A 161 AGL------ITDLAEEAGMT 174 (225)
T ss_dssp SHH------HHHHHHHTTSE
T ss_pred CHH------HHHHHHHcCCc
Confidence 433 35677888974
No 257
>2xxp_A CPS2A; replication, peptidoglycan, LCP, LYTR; HET: DSL PEG; 1.69A {Streptococcus pneumoniae} PDB: 3tep_A* 3tfl_A* 2xxq_A* 3tel_A* 4de8_A*
Probab=63.14 E-value=5.7 Score=42.98 Aligned_cols=67 Identities=16% Similarity=0.055 Sum_probs=51.6
Q ss_pred CCCCChHHhhhCCCeEEEEeCchhHHHHHH------hcCCCccceEeCCCHHHHHHHHHcCCcEEEEccchhhHHHHh
Q 002371 677 SPIKGIDTLMTSNDRVGYQVGSFAENYLIE------ELSIPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLS 748 (930)
Q Consensus 677 ~~i~sl~dL~~s~~~i~~~~~s~~~~~l~~------~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~ 748 (930)
++|++++||. | ||++.+...+.+... +.+. ..++..|++..+++.+|.+|++||++.+..+...+..
T Consensus 26 s~i~sl~DLk--g--vgv~~~~~~~~~~~~~~~i~~~~g~-~~~~~~y~~~~~a~~aL~nG~vDAiv~~~~~~~~le~ 98 (398)
T 2xxp_A 26 SEIENVTQLT--S--VTAPTGTDNENIQKLLADIKSSQNT-DLTVNQSSSYLAAYKSLIAGETKAIVLNSVFENIIEL 98 (398)
T ss_dssp CSCCSGGGCS--E--EEECTTTSHHHHHHHHHHHHHHSCC-CCEEEECSSHHHHHHHHHTTSCSCEEEEHHHHHHHHH
T ss_pred CCcCCHHHhc--C--eeeECCCCHHHHHHHHHHHHHhhCC-cceEEecCCHHHHHHHHHcCCCCEEEEchHHHHHHHh
Confidence 7999999996 4 999988866655421 1122 1357899999999999999999999998777666543
No 258
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=63.06 E-value=26 Score=37.96 Aligned_cols=93 Identities=10% Similarity=0.003 Sum_probs=63.1
Q ss_pred CcEEEEEEecCCcCcc--hHHHHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCCceEEEEEcch------hh
Q 002371 159 WGEVIAIFNDDDQGRN--GVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS------RT 230 (930)
Q Consensus 159 w~~vaii~~d~~~g~~--~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~------~~ 230 (930)
-++|+|+| ++.||.. .++.+.+.+.+.|++++........ .++.+.++..+. +++.+++.+.. +.
T Consensus 265 ~~~v~I~Y-~S~yGnTe~mA~~ia~gl~~~Gv~~~~~~~~d~~----~~~~s~i~~~i~--~~~~ivlGspT~~~~~~p~ 337 (410)
T 4dik_A 265 KGKVTVIY-DSMYGFVENVMKKAIDSLKEKGFTPVVYKFSDEE----RPAISEILKDIP--DSEALIFGVSTYEAEIHPL 337 (410)
T ss_dssp TTEEEEEE-ECSSSHHHHHHHHHHHHHHHTTCEEEEEEECSSC----CCCHHHHHHHST--TCSEEEEEECCTTSSSCHH
T ss_pred ccceeeEE-ecccChHHHHHHHHHHHHHhcCCceEEEEeccCC----CCCHHHHHHHHH--hCCeEEEEeCCcCCcCCHH
Confidence 45899998 5566654 5799999999999987755444443 456777777775 45777775432 35
Q ss_pred HHHHHHHHHHcCCCCCceEEEEeCcccc
Q 002371 231 GLMVFDVAQRLGMMDSGYVWIATTWLST 258 (930)
Q Consensus 231 ~~~~~~~a~~~g~~~~~~~~i~~~~~~~ 258 (930)
...++.........++.-..+++.+|..
T Consensus 338 ~~~~l~~l~~~~~~~K~~~~FGSyGWsg 365 (410)
T 4dik_A 338 MRFTLLEIIDKANYEKPVLVFGVHGWAP 365 (410)
T ss_dssp HHHHHHHHHHHCCCCCEEEEEEECCCCC
T ss_pred HHHHHHHHHhcccCCCEEEEEECCCCCc
Confidence 5567777777766655555667666654
No 259
>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A*
Probab=62.81 E-value=16 Score=39.06 Aligned_cols=95 Identities=14% Similarity=0.092 Sum_probs=66.2
Q ss_pred HHHHHHHcCCcEEEEEEecCCcCcchHHHHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCCceEEEEEcch-
Q 002371 150 IAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS- 228 (930)
Q Consensus 150 i~~~l~~~~w~~vaii~~d~~~g~~~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~- 228 (930)
+.++++.+| +++.+|+....+. ...+.+.+.|++.|+++.+ ..+... ...+.+...+..+++.++|+||-.+.+
T Consensus 23 l~~~l~~~g-~~~livtd~~~~~-~~~~~v~~~L~~~g~~~~~-~~~~ge--~~~~~v~~~~~~~~~~~~d~IIavGGGs 97 (370)
T 1jq5_A 23 IANYLEGIG-NKTVVIADEIVWK-IAGHTIVNELKKGNIAAEE-VVFSGE--ASRNEVERIANIARKAEAAIVIGVGGGK 97 (370)
T ss_dssp HHHHHTTTC-SEEEEEECHHHHH-HTHHHHHHHHHTTTCEEEE-EECCSS--CBHHHHHHHHHHHHHTTCSEEEEEESHH
T ss_pred HHHHHHHcC-CeEEEEEChHHHH-HHHHHHHHHHHHcCCeEEE-EeeCCC--CCHHHHHHHHHHHHhcCCCEEEEeCChH
Confidence 556677778 9999998654433 4678889999999988754 334433 445678888888899999999976554
Q ss_pred -hhHHHHHHHHHHcCCCCCceEEEEeC
Q 002371 229 -RTGLMVFDVAQRLGMMDSGYVWIATT 254 (930)
Q Consensus 229 -~~~~~~~~~a~~~g~~~~~~~~i~~~ 254 (930)
-|...++... .| ..++-|-|.
T Consensus 98 v~D~aK~iA~~--~~---~p~i~IPTT 119 (370)
T 1jq5_A 98 TLDTAKAVADE--LD---AYIVIVPTA 119 (370)
T ss_dssp HHHHHHHHHHH--HT---CEEEEEESS
T ss_pred HHHHHHHHHHh--cC---CCEEEeccc
Confidence 5677766633 23 355666665
No 260
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=62.69 E-value=20 Score=36.67 Aligned_cols=85 Identities=7% Similarity=-0.068 Sum_probs=61.0
Q ss_pred cCCcEEEEEEec---CCcCcchHHHHHHHHHhc-CcEEEEEEecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchh-hH
Q 002371 157 FGWGEVIAIFND---DDQGRNGVTALGDKLAEI-RCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSR-TG 231 (930)
Q Consensus 157 ~~w~~vaii~~d---~~~g~~~~~~~~~~l~~~-g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~-~~ 231 (930)
-.-++|+++..+ ++|.......+.+++++. |..+......... .+.......++.+.+.++|.||+..... ..
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~~g~~~~~~~~~~~~--~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~ 83 (304)
T 3gbv_A 6 NKKYTFACLLPKHLEGEYWTDVQKGIREAVTTYSDFNISANITHYDP--YDYNSFVATSQAVIEEQPDGVMFAPTVPQYT 83 (304)
T ss_dssp -CCEEEEEEEECCCTTSHHHHHHHHHHHHHHHTGGGCEEEEEEEECS--SCHHHHHHHHHHHHTTCCSEEEECCSSGGGT
T ss_pred CCcceEEEEecCCCCchHHHHHHHHHHHHHHHHHhCCeEEEEEcCCC--CCHHHHHHHHHHHHhcCCCEEEECCCChHHH
Confidence 344678888754 667788889999999998 7777665433222 2355667788899889999999986554 34
Q ss_pred HHHHHHHHHcCC
Q 002371 232 LMVFDVAQRLGM 243 (930)
Q Consensus 232 ~~~~~~a~~~g~ 243 (930)
...++.+.+.|+
T Consensus 84 ~~~~~~~~~~~i 95 (304)
T 3gbv_A 84 KGFTDALNELGI 95 (304)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHCCC
Confidence 667888888775
No 261
>3hn0_A Nitrate transport protein; ABC transporter, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; 1.75A {Parabacteroides distasonis}
Probab=62.44 E-value=18 Score=36.94 Aligned_cols=62 Identities=11% Similarity=0.057 Sum_probs=42.7
Q ss_pred CCCeEEEE-eCchhHHHHH---HhcCCCccceEeCC-CHHHHHHHHHcCCcEEEEccchhhHHHHhcC
Q 002371 688 SNDRVGYQ-VGSFAENYLI---EELSIPKSRLVALG-SPEEYAIALENRTVAAVVDERPYIDLFLSDH 750 (930)
Q Consensus 688 s~~~i~~~-~~s~~~~~l~---~~~~~~~~~~~~~~-~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~ 750 (930)
.|++|++. .|+....+++ ++.++ +.+++... +..+...++.+|++||.+...++......+.
T Consensus 95 kGK~Iav~~~gs~~~~ll~~~L~~~Gl-dv~~~~~~~~~~~~~~al~~G~vDa~~~~eP~~~~a~~~~ 161 (283)
T 3hn0_A 95 KEPALYVFGNGTTPDILTRYYLGRQRL-DYPLNYAFNTAGEITQGILAGKVNRAVLGEPFLSIALRKD 161 (283)
T ss_dssp CSCCEECSSTTSHHHHHHHHHHHHHTC-CCCEECSCCSHHHHHHHHHHTSCSEEEECTTHHHHHHHHC
T ss_pred CCCEEEecCCCCcHHHHHHHHHHHcCC-ceEEEEccCCHHHHHHHHHcCCCCEEEecccHHHHHHhhC
Confidence 38899975 5665444332 23445 34555555 6899999999999999998888877655443
No 262
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=62.35 E-value=20 Score=36.36 Aligned_cols=80 Identities=6% Similarity=-0.090 Sum_probs=60.3
Q ss_pred CcEEEEEEec--CCcCcchHHHHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCCceEEEEEcch-hhHHHHH
Q 002371 159 WGEVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS-RTGLMVF 235 (930)
Q Consensus 159 w~~vaii~~d--~~~g~~~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~-~~~~~~~ 235 (930)
-++|+++..+ ++|.......+.+++++.|.++..... . .+.......++.+.+.++|.||+.... ......+
T Consensus 5 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~----~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~ 79 (291)
T 3l49_A 5 GKTIGITAIGTDHDWDLKAYQAQIAEIERLGGTAIALDA-G----RNDQTQVSQIQTLIAQKPDAIIEQLGNLDVLNPWL 79 (291)
T ss_dssp TCEEEEEESCCSSHHHHHHHHHHHHHHHHTTCEEEEEEC-T----TCHHHHHHHHHHHHHHCCSEEEEESSCHHHHHHHH
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEEcC-C----CCHHHHHHHHHHHHHcCCCEEEEeCCChhhhHHHH
Confidence 3678888864 667778889999999999999876532 2 225556777888888899999987654 4566778
Q ss_pred HHHHHcCC
Q 002371 236 DVAQRLGM 243 (930)
Q Consensus 236 ~~a~~~g~ 243 (930)
+++.+.|+
T Consensus 80 ~~~~~~~i 87 (291)
T 3l49_A 80 QKINDAGI 87 (291)
T ss_dssp HHHHHTTC
T ss_pred HHHHHCCC
Confidence 88888775
No 263
>2jfn_A Glutamate racemase; cell WALL, isomerase, cell shape, UDP- murnac-Ala, peptidoglycan biosynthesis, peptidoglycan synthesis; HET: GLU UMA; 1.9A {Escherichia coli}
Probab=62.17 E-value=32 Score=35.16 Aligned_cols=40 Identities=13% Similarity=0.099 Sum_probs=29.3
Q ss_pred HHHHHHHHh-cCcEEEEccCChhhHHHHHHhhhcCCCcEEE
Q 002371 81 IMGALQFME-TDTLAIVGPQSAVMAHVLSHLANELQVPLLS 120 (930)
Q Consensus 81 ~~~a~~li~-~~v~aiiGp~~S~~~~av~~~~~~~~vp~is 120 (930)
...+..+++ .++.+|+-+-.+..+.++-.+-+..++|+|.
T Consensus 73 ~~i~~~ll~~~g~d~IviaCNTas~~~l~~lr~~~~iPVig 113 (285)
T 2jfn_A 73 VAIVTAVQERYPLALAVVACNTASTVSLPALREKFDFPVVG 113 (285)
T ss_dssp HHHHHHHHHHSCCSEEEECCHHHHHHHHHHHHHHCSSCEEC
T ss_pred HHHHHHHHHhCCCCEEEEECccccHHHHHHHHHhCCCCEEe
Confidence 334444555 4899999877776666777788888999996
No 264
>2de3_A Dibenzothiophene desulfurization enzyme B; alpha-beta, hydrolase; HET: OBP; 1.60A {Rhodococcus SP} PDB: 2de4_A* 2de2_A
Probab=61.95 E-value=18 Score=38.57 Aligned_cols=120 Identities=20% Similarity=0.189 Sum_probs=69.1
Q ss_pred CCCCChHHhhhCCCeEEEEe-------Cch-----------------------hHHHHHHhcCCCc--cceEeCCCHH--
Q 002371 677 SPIKGIDTLMTSNDRVGYQV-------GSF-----------------------AENYLIEELSIPK--SRLVALGSPE-- 722 (930)
Q Consensus 677 ~~i~sl~dL~~s~~~i~~~~-------~s~-----------------------~~~~l~~~~~~~~--~~~~~~~~~~-- 722 (930)
++|++++||. |++||+.. |+. ...++ +..+... .+++.++..+
T Consensus 109 s~I~s~~DLk--Gk~Igv~~~~~~~~~gs~~~~~~~~~~~~~~~~~gs~~~~~~~~~L-~~~Gl~~~dv~~v~~~~~~~~ 185 (365)
T 2de3_A 109 SPITAAADLA--GRRIGVSASAIRILRGQLGDYLELDPWRQTLVALGSWEARALLHTL-EHGELGVDDVELVPISSPGVD 185 (365)
T ss_dssp CSCCSGGGGT--TCEEEECHHHHHHHHTCCTTGGGSCHHHHHHHHTTHHHHHHHHHHH-HHTTCCGGGSEEEECCCTTTC
T ss_pred CCCCCHHHhC--CCeEEeecccccccCCCcccccccchhhhhhhccchhhHHHHHHHH-HHcCCCHHHeEEEECCCcccc
Confidence 7899999996 99999986 431 23445 4445443 3455555421
Q ss_pred -----------------------HHHHHHHcCCcEEEEccchhhHHHHhcCcceEEeCCcc----ccCccEEEecC----
Q 002371 723 -----------------------EYAIALENRTVAAVVDERPYIDLFLSDHCQFSVRGQEF----TKSGWGFAFPR---- 771 (930)
Q Consensus 723 -----------------------~~~~~l~~g~~~a~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~k---- 771 (930)
+...+|.+|++||++...++....... ..+++.+.- ......+++++
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~~G~vDA~~~~~p~~~~~~~~--g~~~l~~~~~~~~~~~~~~l~~~~~~~~ 263 (365)
T 2de3_A 186 VPAEQLEESATVKGADLFPDVARGQAAVLASGDVDALYSWLPWAGELQAT--GARPVVDLGLDERNAYASVWTVSSGLVR 263 (365)
T ss_dssp CCHHHHHHSSBSSHHHHSTTHHHHHHHHHHSSSCSEEEEEHHHHHHHHHT--TEEESSCGGGSGGGCEEEEEEEEHHHHH
T ss_pred ccccccccccccccccccccchhhHHHHHhCCCcCEEEEcchhHHHHHhC--CCEEEEeCcccCCCCceEEEEEcHHHHH
Confidence 268899999999999887776554432 355554321 11123555653
Q ss_pred CCc-chhH----HHHHHHhcccc-ccHHHHHHhhcc
Q 002371 772 DSP-LAID----MSTAILTLSEN-GELQRIHDKWLR 801 (930)
Q Consensus 772 ~sp-l~~~----~n~~i~~l~e~-G~~~~~~~~~~~ 801 (930)
..| +... +.++...+.++ ....++..+++.
T Consensus 264 ~~p~~v~~~~~a~~~a~~~~~~~p~~~~~i~~~~~~ 299 (365)
T 2de3_A 264 QRPGLVQRLVDAAVDAGLWARDHSDAVTSLHAANLG 299 (365)
T ss_dssp HCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHhC
Confidence 345 4444 44444555544 234444455543
No 265
>3ce9_A Glycerol dehydrogenase; NP_348253.1, 3-dehydroquinate syntha structural genomics, joint center for structural genomics; HET: MSE; 2.37A {Clostridium acetobutylicum atcc 824}
Probab=61.83 E-value=20 Score=38.02 Aligned_cols=97 Identities=7% Similarity=0.030 Sum_probs=66.2
Q ss_pred HHHHHHHcCCcEEEEEEecCCcCcchHHHHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCCceEEEEEcch-
Q 002371 150 IAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS- 228 (930)
Q Consensus 150 i~~~l~~~~w~~vaii~~d~~~g~~~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~- 228 (930)
+.++++.+|.+++.+|+....+. ...+.+.+.|++.|+++......+ + .+.+..... +.+++.++|+||-.+.+
T Consensus 25 l~~~l~~~g~~~~livtd~~~~~-~~~~~v~~~L~~~g~~~~~~~~~~-~--~~~~~v~~~-~~~~~~~~d~IIavGGGs 99 (354)
T 3ce9_A 25 IGQIIKKGNFKRVSLYFGEGIYE-LFGETIEKSIKSSNIEIEAVETVK-N--IDFDEIGTN-AFKIPAEVDALIGIGGGK 99 (354)
T ss_dssp HHHHHGGGTCSEEEEEEETTHHH-HHHHHHHHHHHTTTCEEEEEEEEC-C--CBHHHHHHH-HTTSCTTCCEEEEEESHH
T ss_pred HHHHHHhcCCCeEEEEECccHHH-HHHHHHHHHHHHcCCeEEEEecCC-C--CCHHHHHHH-HHhhhcCCCEEEEECChH
Confidence 56677778889999998665443 467888889998898875433233 3 346677777 88888899999976554
Q ss_pred -hhHHHHHHHHHHcCCCCCceEEEEeCcc
Q 002371 229 -RTGLMVFDVAQRLGMMDSGYVWIATTWL 256 (930)
Q Consensus 229 -~~~~~~~~~a~~~g~~~~~~~~i~~~~~ 256 (930)
-|...++... .| ..++-|-|...
T Consensus 100 v~D~aK~vA~~--~~---~p~i~IPTT~~ 123 (354)
T 3ce9_A 100 AIDAVKYMAFL--RK---LPFISVPTSTS 123 (354)
T ss_dssp HHHHHHHHHHH--HT---CCEEEEESCCS
T ss_pred HHHHHHHHHhh--cC---CCEEEecCccc
Confidence 5666666633 23 34566666544
No 266
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=61.76 E-value=17 Score=38.38 Aligned_cols=81 Identities=4% Similarity=-0.004 Sum_probs=59.0
Q ss_pred CCcEEEEEEec---CCcCcchHHHHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhc--CCceEEEEEcchhhHH
Q 002371 158 GWGEVIAIFND---DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRM--MEARVIVVHGYSRTGL 232 (930)
Q Consensus 158 ~w~~vaii~~d---~~~g~~~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~--~~~~viv~~~~~~~~~ 232 (930)
+-.+|+++..+ ++|.......+.+++++.|.++.... . . .+.......++++.+ .++|.||+........
T Consensus 2 ~~~~Ig~i~p~~~~~~f~~~~~~g~~~~a~~~g~~~~~~~-~--~--~~~~~~~~~i~~~i~~~~~vDgiIi~~~~~~~~ 76 (350)
T 3h75_A 2 SLTSVVFLNPGNSTETFWVSYSQFMQAAARDLGLDLRILY-A--E--RDPQNTLQQARELFQGRDKPDYLMLVNEQYVAP 76 (350)
T ss_dssp -CCEEEEEECSCTTCHHHHHHHHHHHHHHHHHTCEEEEEE-C--T--TCHHHHHHHHHHHHHSSSCCSEEEEECCSSHHH
T ss_pred CCCEEEEECCCCCCChHHHHHHHHHHHHHHHcCCeEEEEE-C--C--CCHHHHHHHHHHHHhcCCCCCEEEEeCchhhHH
Confidence 34689999865 36788889999999999999987642 1 1 224455566777777 5999999986555667
Q ss_pred HHHHHHHHcCC
Q 002371 233 MVFDVAQRLGM 243 (930)
Q Consensus 233 ~~~~~a~~~g~ 243 (930)
.+++.+.+.|+
T Consensus 77 ~~~~~~~~~gi 87 (350)
T 3h75_A 77 QILRLSQGSGI 87 (350)
T ss_dssp HHHHHHTTSCC
T ss_pred HHHHHHHhCCC
Confidence 77888887775
No 267
>2vvt_A Glutamate racemase; isomerase, peptidoglycan synthesis, cell WALL biogenesis/degradation, cell shape, benzyl purine, MURI inhibitor; HET: I24 DGL; 1.65A {Enterococcus faecalis} PDB: 2jfp_A* 2jfo_A* 2jfu_A 2jfv_A* 2jfw_A*
Probab=59.96 E-value=30 Score=35.46 Aligned_cols=120 Identities=12% Similarity=0.049 Sum_probs=66.8
Q ss_pred HHHHHHHHHhcCcEEEEccCChhhHHHHHHhhhcCCCcEEEeecCCCCCCCCCCCeEEEccCChHHHHHHHHH-HHHHcC
Q 002371 80 SIMGALQFMETDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAE-MVSYFG 158 (930)
Q Consensus 80 a~~~a~~li~~~v~aiiGp~~S~~~~av~~~~~~~~vp~is~~a~~~~ls~~~~~~~fr~~p~~~~~~~ai~~-~l~~~~ 158 (930)
+.+.+..|.++++++|+=+-.+..+.++..+-+..++|+|... ++.++ .+...+
T Consensus 75 ~~~~~~~L~~~g~d~IVIACNTas~~~l~~lr~~~~iPVigii-------------------------epa~~~A~~~~~ 129 (290)
T 2vvt_A 75 TWEMADFLLKKRIKMLVIACNTATAVALEEIKAALPIPVVGVI-------------------------LPGARAAVKVTK 129 (290)
T ss_dssp HHHHHHHHHTTTCSEEEECCHHHHHHHHHHHHHHCSSCEEESS-------------------------HHHHHHHHHHCS
T ss_pred HHHHHHHHHHCCCCEEEEeCcchhHHHHHHHHHhCCCCEEccc-------------------------HHHHHHHHHhcC
Confidence 3445555666699999987777766677778888899999620 11122 223356
Q ss_pred CcEEEEEEecCCcCcchHHHHHHHHHhc--CcEEEEEEecCC-------CCCC---ChhHHHHHHHHHhcCCceEEEEEc
Q 002371 159 WGEVIAIFNDDDQGRNGVTALGDKLAEI--RCKISYKSALPP-------DQSV---TETDVRNELVKVRMMEARVIVVHG 226 (930)
Q Consensus 159 w~~vaii~~d~~~g~~~~~~~~~~l~~~--g~~i~~~~~~~~-------~~~~---~~~d~~~~l~~l~~~~~~viv~~~ 226 (930)
-++|+|+......-. ..+.+.+++. +.++... ..+. +... ....+...++.+++.++|+||+.|
T Consensus 130 ~~rIgVLaT~~T~~s---~~y~~~l~~~~~~~~v~~~-~~~~lv~~ve~g~~~~~~~~~~l~~~l~~l~~~g~D~IVLGC 205 (290)
T 2vvt_A 130 NNKIGVIGTLGTIKS---ASYEIAIKSKAPAIEVTSL-ACPKFVPIVESNQYRSSVAKKIVAETLQALQLKGLDTLILGC 205 (290)
T ss_dssp SSEEEEEECHHHHHT---THHHHHHHTTCTTSEEEEE-ECTTHHHHHHTTCTTSHHHHHHHHHHHGGGTTSCCSEEEECS
T ss_pred CCEEEEEeCcHhhhh---HHHHHHHHHhCCCCEEEec-cCHHHHHHHHcCCCCCHHHHHHHHHHHHHHHhCCCCEEEECC
Confidence 688998875432111 2355666665 5555422 2111 1000 012244455555556778887765
Q ss_pred ch
Q 002371 227 YS 228 (930)
Q Consensus 227 ~~ 228 (930)
..
T Consensus 206 Th 207 (290)
T 2vvt_A 206 TH 207 (290)
T ss_dssp TT
T ss_pred cC
Confidence 54
No 268
>3ojc_A Putative aspartate/glutamate racemase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha beta; 1.75A {Yersinia pestis}
Probab=59.80 E-value=7.3 Score=38.61 Aligned_cols=82 Identities=15% Similarity=0.105 Sum_probs=49.8
Q ss_pred HHHHHHHHhcCcEEEEccCChhhHHHHHHhhhcCCCcEEEeecCCCCCCCCCCCeEEEccCChHHHHHHHHHHHHHcCCc
Q 002371 81 IMGALQFMETDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWG 160 (930)
Q Consensus 81 ~~~a~~li~~~v~aiiGp~~S~~~~av~~~~~~~~vp~is~~a~~~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~~~w~ 160 (930)
.+.+..|.+.|+.+|+=+-.+... ++..+-+..++|+++. .++.++.+...+-+
T Consensus 66 ~~~~~~L~~~g~~~iviaCNTa~~-~~~~l~~~~~iPvi~i-------------------------~~~~~~~a~~~~~~ 119 (231)
T 3ojc_A 66 SNAAISLKHAGAEVIVVCTNTMHK-VADDIEAACGLPLLHI-------------------------ADATAVQIKQQGID 119 (231)
T ss_dssp HHHHHHHHHHTCCEEEECSSGGGG-GHHHHHHHHCSCBCCH-------------------------HHHHHHHHHHTTCC
T ss_pred HHHHHHHHhcCCCEEEEeCCchHH-HHHHHHHhCCCCEecc-------------------------HHHHHHHHHHcCCC
Confidence 344445555699999987766544 3355666668888852 24455555556778
Q ss_pred EEEEEEecCCcCcchHHHHHHHHHhc-CcEEE
Q 002371 161 EVIAIFNDDDQGRNGVTALGDKLAEI-RCKIS 191 (930)
Q Consensus 161 ~vaii~~d~~~g~~~~~~~~~~l~~~-g~~i~ 191 (930)
+|+++......- ...+++.+++. |+++.
T Consensus 120 rVgvLaT~~T~~---s~~y~~~l~~~~g~~v~ 148 (231)
T 3ojc_A 120 KIGLLGTRYTME---QGFYRGRLTEKHGIEVI 148 (231)
T ss_dssp EEEEESCHHHHH---STTTHHHHHHTTCCEEE
T ss_pred EEEEEcCHHHhh---chHHHHHHHhcCCCEEE
Confidence 999997542111 12335566666 88764
No 269
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=58.77 E-value=23 Score=36.34 Aligned_cols=78 Identities=10% Similarity=0.063 Sum_probs=58.9
Q ss_pred cEEEEEEec--CCcCcchHHHHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCCceEEEEEcch-hhHHHHHH
Q 002371 160 GEVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS-RTGLMVFD 236 (930)
Q Consensus 160 ~~vaii~~d--~~~g~~~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~-~~~~~~~~ 236 (930)
.+|+++..+ ++|.....+.+.+++++.|.++..... .+ .......++.+.+.++|.||+.... ......++
T Consensus 3 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~--~~----~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~~ 76 (306)
T 8abp_A 3 LKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAV--PD----GEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVA 76 (306)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHHHHHHTEEEEEEEC--CS----HHHHHHHHHHHHHTTCCEEEEECSCGGGHHHHHH
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHHHcCCEEEEeCC--CC----HHHHHHHHHHHHHcCCCEEEEeCCCchhhHHHHH
Confidence 468888754 677888889999999999998875433 12 5566778888888999999997654 44556788
Q ss_pred HHHHcCC
Q 002371 237 VAQRLGM 243 (930)
Q Consensus 237 ~a~~~g~ 243 (930)
++.+.|+
T Consensus 77 ~~~~~~i 83 (306)
T 8abp_A 77 KARGYDM 83 (306)
T ss_dssp HHHHTTC
T ss_pred HHHHCCC
Confidence 8888775
No 270
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=58.70 E-value=19 Score=36.85 Aligned_cols=80 Identities=13% Similarity=0.016 Sum_probs=56.0
Q ss_pred cEEEEEEe--cCCcCcchHHHHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchh-hHHHHHH
Q 002371 160 GEVIAIFN--DDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSR-TGLMVFD 236 (930)
Q Consensus 160 ~~vaii~~--d~~~g~~~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~-~~~~~~~ 236 (930)
++|+++.. +++|.....+.+.+++++.|+++.... +.. .+.......++++...++|.|++..... .....++
T Consensus 5 ~~Ig~i~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~--~~~--~~~~~~~~~~~~l~~~~vdgiii~~~~~~~~~~~~~ 80 (303)
T 3d02_A 5 KTVVNISKVDGMPWFNRMGEGVVQAGKEFNLNASQVG--PSS--TDAPQQVKIIEDLIARKVDAITIVPNDANVLEPVFK 80 (303)
T ss_dssp EEEEEECSCSSCHHHHHHHHHHHHHHHHTTEEEEEEC--CSS--SCHHHHHHHHHHHHHTTCSEEEECCSCHHHHHHHHH
T ss_pred eEEEEEeccCCChHHHHHHHHHHHHHHHcCCEEEEEC--CCC--CCHHHHHHHHHHHHHcCCCEEEEecCChHHHHHHHH
Confidence 57888864 467778888999999999998876421 112 2345556678888888999999876543 3345677
Q ss_pred HHHHcCC
Q 002371 237 VAQRLGM 243 (930)
Q Consensus 237 ~a~~~g~ 243 (930)
.+.+.|+
T Consensus 81 ~~~~~~i 87 (303)
T 3d02_A 81 KARDAGI 87 (303)
T ss_dssp HHHHTTC
T ss_pred HHHHCCC
Confidence 7777664
No 271
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=58.44 E-value=27 Score=35.19 Aligned_cols=79 Identities=9% Similarity=-0.026 Sum_probs=59.7
Q ss_pred CCcEEEEEEec--CCcCcchHHHHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchhhHHHHH
Q 002371 158 GWGEVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVF 235 (930)
Q Consensus 158 ~w~~vaii~~d--~~~g~~~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~~~~~~~ 235 (930)
.-+.|+++..+ ++|.......+.+++++.|..+..... . .+...-...++.+.+.++|.||+..... ...+
T Consensus 6 ~s~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~-~----~~~~~~~~~~~~l~~~~vdgiIi~~~~~--~~~~ 78 (276)
T 3jy6_A 6 SSKLIAVIVANIDDYFSTELFKGISSILESRGYIGVLFDA-N----ADIEREKTLLRAIGSRGFDGLILQSFSN--PQTV 78 (276)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHHHHHHHTTTCEEEEEEC-T----TCHHHHHHHHHHHHTTTCSEEEEESSCC--HHHH
T ss_pred CCcEEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeC-C----CCHHHHHHHHHHHHhCCCCEEEEecCCc--HHHH
Confidence 34688998864 667788889999999999998876431 2 2245566788888889999999987665 6677
Q ss_pred HHHHHcCC
Q 002371 236 DVAQRLGM 243 (930)
Q Consensus 236 ~~a~~~g~ 243 (930)
+.+.+.|+
T Consensus 79 ~~l~~~~i 86 (276)
T 3jy6_A 79 QEILHQQM 86 (276)
T ss_dssp HHHHTTSS
T ss_pred HHHHHCCC
Confidence 78877775
No 272
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=58.27 E-value=12 Score=38.92 Aligned_cols=80 Identities=11% Similarity=0.034 Sum_probs=56.5
Q ss_pred cEEEEEEe--cCCcCcchHHHHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchh-hHHHHHH
Q 002371 160 GEVIAIFN--DDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSR-TGLMVFD 236 (930)
Q Consensus 160 ~~vaii~~--d~~~g~~~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~-~~~~~~~ 236 (930)
++|+++.. +++|.....+.+.+++++.|.++... .+.. .+...-...++.+.+.++|.|++..... .....++
T Consensus 4 ~~Igvi~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~--~~~~--~d~~~q~~~i~~li~~~vdgiii~~~~~~~~~~~~~ 79 (316)
T 1tjy_A 4 ERIAFIPKLVGVGFFTSGGNGAQEAGKALGIDVTYD--GPTE--PSVSGQVQLVNNFVNQGYDAIIVSAVSPDGLCPALK 79 (316)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHHHHHHTCEEEEC--CCSS--CCHHHHHHHHHHHHHTTCSEEEECCSSSSTTHHHHH
T ss_pred CEEEEEeCCCCChHHHHHHHHHHHHHHHhCCEEEEE--CCCC--CCHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHH
Confidence 57888875 46677778889999999999887642 1222 2345556678888888999999875443 3356788
Q ss_pred HHHHcCC
Q 002371 237 VAQRLGM 243 (930)
Q Consensus 237 ~a~~~g~ 243 (930)
.+++.|+
T Consensus 80 ~a~~~gi 86 (316)
T 1tjy_A 80 RAMQRGV 86 (316)
T ss_dssp HHHHTTC
T ss_pred HHHHCcC
Confidence 8888775
No 273
>4euo_A ABC transporter, substrate binding protein (polya; class D of PBP, GABA-binding, transport protein; 1.28A {Agrobacterium tumefaciens} PDB: 4eq7_A
Probab=58.20 E-value=1.2e+02 Score=30.92 Aligned_cols=84 Identities=2% Similarity=-0.086 Sum_probs=49.2
Q ss_pred ceEeCCCHHHHHHHHHcCCcEEEEccchhhHHHHhcCcceEEeCCccccCccEEEecCCCcchhHHHHHHHhccccccHH
Q 002371 714 RLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSDHCQFSVRGQEFTKSGWGFAFPRDSPLAIDMSTAILTLSENGELQ 793 (930)
Q Consensus 714 ~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~k~spl~~~~n~~i~~l~e~G~~~ 793 (930)
.+..+.+..+..+.+.+|++++.+.....+........++.++-+-......+++++|+++-.+.--+.|.-|.......
T Consensus 175 ~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~k~s~~~e~A~~fi~fl~s~e~q~ 254 (320)
T 4euo_A 175 DIIWWSGGAQSQQLIASAEAPFGSVWNGRMTALEQSGVKVETSWAQNITAADSLVVPKGTKNKDAAMKFIALATSAQAQA 254 (320)
T ss_dssp GEEEECSHHHHHHHHHTTSSCEEEEEHHHHHHHHHTTCCCEEEEEEEEEEEEEEECBTTCSCHHHHHHHHHHHTSHHHHH
T ss_pred ceeEeCCCchHHHHHHcCCEEEEEeecHHHHHHHhCCCCeEEEecCceeecceEEEECCCCCHHHHHHHHHHHhCHHHHH
Confidence 34556677888899999999877765444433333333333322211122347889999997666666666665443333
Q ss_pred HHHH
Q 002371 794 RIHD 797 (930)
Q Consensus 794 ~~~~ 797 (930)
.+.+
T Consensus 255 ~~~~ 258 (320)
T 4euo_A 255 DMAT 258 (320)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 3433
No 274
>3uhf_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta sandwich fold, isomerase; HET: DGL; 1.83A {Campylobacter jejuni} PDB: 3uho_A* 3uhp_A
Probab=57.68 E-value=63 Score=32.65 Aligned_cols=103 Identities=12% Similarity=-0.056 Sum_probs=59.3
Q ss_pred CCCcEEEEEEecCC------CChHHHHHH----HHHHHhcCcEEEEccCChhhHHHHHHhhhcCCCcEEEeecCCCCCCC
Q 002371 61 LGGRKLSITMHDAK------FNGFLSIMG----ALQFMETDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSP 130 (930)
Q Consensus 61 l~g~~l~l~~~D~~------~~~~~a~~~----a~~li~~~v~aiiGp~~S~~~~av~~~~~~~~vp~is~~a~~~~ls~ 130 (930)
||+..+. .+.|+. .+.....+. +..|.+.|+.+|+=+-.+..+.++-.+-+...+|+|..
T Consensus 47 lP~e~~i-y~~D~a~~PYG~ks~e~i~~~~~~~~~~L~~~g~d~IVIACNTa~~~al~~lr~~~~iPvigi--------- 116 (274)
T 3uhf_A 47 RLFDEII-YYGDTARVPYGVKDKDTIIKFCLEALDFFEQFQIDMLIIACNTASAYALDALRAKAHFPVYGV--------- 116 (274)
T ss_dssp TCCSEEE-EEECTTTCCCTTSCHHHHHHHHHHHHHHHTTSCCSEEEECCHHHHHHSHHHHHHHCSSCEECS---------
T ss_pred CCCCCEE-EEecCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHhcCCCEEcC---------
Confidence 3666553 345642 344444433 33444459999998777777666777888889999952
Q ss_pred CCCCeEEEccCChHHHHHHHHHHHH-H--cCCcEEEEEEecCCcCcchHHHHHHHHHhcCcEEEE
Q 002371 131 LQYPFFVQTAPNDLYLMSAIAEMVS-Y--FGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISY 192 (930)
Q Consensus 131 ~~~~~~fr~~p~~~~~~~ai~~~l~-~--~~w~~vaii~~d~~~g~~~~~~~~~~l~~~g~~i~~ 192 (930)
.++.++.+. . -+-++|+++..... -....+.+.+.+.|.+.+.
T Consensus 117 ----------------iepa~~~a~~~~~t~~~~IGVLaT~~T---i~s~~Y~~~l~~~~~~~V~ 162 (274)
T 3uhf_A 117 ----------------IDAGVEATIKALHDKNKEILVIATKAT---IKSEEYQKRLLSQGYTNIN 162 (274)
T ss_dssp ----------------HHHHHHHHHHHHCCTTSCEEEEECHHH---HHHTHHHHHHHTTTCCCEE
T ss_pred ----------------CHHHHHHHHHhcccCCCeEEEEecccc---ccHHHHHHHHHHcCCceEE
Confidence 222333322 2 25678888875421 1122556666666654443
No 275
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=57.56 E-value=23 Score=36.82 Aligned_cols=79 Identities=15% Similarity=0.125 Sum_probs=59.4
Q ss_pred cEEEEEEec--CCcCcchHHHHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCCceEEEEEcch-hhHHHHHH
Q 002371 160 GEVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS-RTGLMVFD 236 (930)
Q Consensus 160 ~~vaii~~d--~~~g~~~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~-~~~~~~~~ 236 (930)
++|+++..+ ++|.......+.+++++.|.++.... . . .+...-...++.+.+.++|.||+.... ......++
T Consensus 4 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~--~-~--~~~~~~~~~i~~~~~~~vdgiIi~~~~~~~~~~~~~ 78 (330)
T 3uug_A 4 GSVGIAMPTKSSARWIDDGNNIVKQLQEAGYKTDLQY--A-D--DDIPNQLSQIENMVTKGVKVLVIASIDGTTLSDVLK 78 (330)
T ss_dssp CEEEEEECCSSSTHHHHHHHHHHHHHHHTTCEEEEEE--C-T--TCHHHHHHHHHHHHHHTCSEEEECCSSGGGGHHHHH
T ss_pred cEEEEEeCCCcchHHHHHHHHHHHHHHHcCCEEEEee--C-C--CCHHHHHHHHHHHHHcCCCEEEEEcCCchhHHHHHH
Confidence 678888865 67888889999999999999987653 1 1 234555667888888899999987654 34567788
Q ss_pred HHHHcCC
Q 002371 237 VAQRLGM 243 (930)
Q Consensus 237 ~a~~~g~ 243 (930)
++.+.|+
T Consensus 79 ~~~~~gi 85 (330)
T 3uug_A 79 QAGEQGI 85 (330)
T ss_dssp HHHHTTC
T ss_pred HHHHCCC
Confidence 8888775
No 276
>2hxw_A Major antigenic peptide PEB3; periplasmic binding protein, N-glycosylation, structural genomics; HET: FLC; 1.60A {Campylobacter jejuni} PDB: 3fjm_A 3fjg_A 3fir_A* 3fj7_A*
Probab=57.25 E-value=18 Score=35.51 Aligned_cols=40 Identities=13% Similarity=0.008 Sum_probs=28.9
Q ss_pred HHHHHHHHHHCCCcccEEEEeCCCCCCCCCHHHHHHHHHcCcccEEEecE
Q 002371 492 IDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGDI 541 (930)
Q Consensus 492 ~dll~~l~~~ln~~~~~~~~~~~~~~~n~~~~~l~~~l~~g~~D~~~~~~ 541 (930)
-++++.+.++.|.++++.+ ++-..++.++. +.+|+++.+-
T Consensus 16 ~~~~~~F~~~~gi~V~~~~---------~~s~~l~~~l~-~~~Dv~~~~~ 55 (237)
T 2hxw_A 16 KDIANKYSEKTGVKVNVNF---------GPQATWFEKAK-KDADILFGAS 55 (237)
T ss_dssp HHHHHHHHHHHCCCEEEEE---------SSHHHHHHHHH-HHCSEEEESS
T ss_pred HHHHHHHHHHhCceEEEEe---------CChHHHHHHhc-cCCCEEEeCC
Confidence 3677778777787665533 45678888888 8999988743
No 277
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=57.11 E-value=47 Score=30.80 Aligned_cols=67 Identities=12% Similarity=0.091 Sum_probs=51.0
Q ss_pred cCCcEEEEEEecCCcCc---chHHHHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhc-CCceEEEEEcc
Q 002371 157 FGWGEVIAIFNDDDQGR---NGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRM-MEARVIVVHGY 227 (930)
Q Consensus 157 ~~w~~vaii~~d~~~g~---~~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~-~~~~viv~~~~ 227 (930)
+.--+++||...|+-|+ .....+.+.+++.|.++.....++.+ .+++...|.+..+ .++|+||..+.
T Consensus 11 ~~~~rv~Ii~tGdElg~i~Dsn~~~l~~~L~~~G~~v~~~~iv~Dd----~~~i~~~l~~~~~~~~~DlVittGG 81 (169)
T 1y5e_A 11 PKEVRCKIVTISDTRTEETDKSGQLLHELLKEAGHKVTSYEIVKDD----KESIQQAVLAGYHKEDVDVVLTNGG 81 (169)
T ss_dssp -CCCEEEEEEECSSCCTTTCHHHHHHHHHHHHHTCEEEEEEEECSS----HHHHHHHHHHHHTCTTCSEEEEECC
T ss_pred ccCCEEEEEEEcCccCeeccChHHHHHHHHHHCCCeEeEEEEeCCC----HHHHHHHHHHHHhcCCCCEEEEcCC
Confidence 44568999987776553 23578888999999999887778765 7888888888775 37899998753
No 278
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=56.57 E-value=24 Score=35.78 Aligned_cols=81 Identities=7% Similarity=0.065 Sum_probs=59.2
Q ss_pred CCcEEEEEEec--CCcCcchHHHHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCCceEEEEEcch-hhHHHH
Q 002371 158 GWGEVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS-RTGLMV 234 (930)
Q Consensus 158 ~w~~vaii~~d--~~~g~~~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~-~~~~~~ 234 (930)
.-++|+++..+ ++|.......+.+++++.|..+..... . .+.......++.+.+.++|.||+.... ......
T Consensus 7 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~----~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~ 81 (293)
T 3l6u_A 7 KRNIVGFTIVNDKHEFAQRLINAFKAEAKANKYEALVATS-Q----NSRISEREQILEFVHLKVDAIFITTLDDVYIGSA 81 (293)
T ss_dssp --CEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEEEC-S----SCHHHHHHHHHHHHHTTCSEEEEECSCTTTTHHH
T ss_pred CCcEEEEEEecCCcHHHHHHHHHHHHHHHHcCCEEEEECC-C----CCHHHHHHHHHHHHHcCCCEEEEecCChHHHHHH
Confidence 44688998864 667778889999999999998876432 1 225556678888888999999987654 334467
Q ss_pred HHHHHHcCC
Q 002371 235 FDVAQRLGM 243 (930)
Q Consensus 235 ~~~a~~~g~ 243 (930)
++++.+.|+
T Consensus 82 ~~~~~~~~i 90 (293)
T 3l6u_A 82 IEEAKKAGI 90 (293)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHHcCC
Confidence 888888775
No 279
>1b73_A Glutamate racemase; isomerase; 2.30A {Aquifex pyrophilus} SCOP: c.78.2.1 c.78.2.1 PDB: 1b74_A*
Probab=56.49 E-value=35 Score=34.16 Aligned_cols=119 Identities=17% Similarity=0.066 Sum_probs=69.1
Q ss_pred HHHHHHHHHhcCcEEEEccCChhhHHHHHHhhhcCCCcEEEeecCCCCCCCCCCCeEEEccCChHHHHHHHHHH-HHHcC
Q 002371 80 SIMGALQFMETDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEM-VSYFG 158 (930)
Q Consensus 80 a~~~a~~li~~~v~aiiGp~~S~~~~av~~~~~~~~vp~is~~a~~~~ls~~~~~~~fr~~p~~~~~~~ai~~~-l~~~~ 158 (930)
..+.+..|.+.|+++|+-+-.+..+.++..+-+..++|++.. .++.++. ++..+
T Consensus 51 ~~~~~~~L~~~g~d~iviaCnTa~~~~~~~lr~~~~iPvigi-------------------------~e~~~~~A~~~~~ 105 (254)
T 1b73_A 51 SLECAGFLKDKGVDIIVVACNTASAYALERLKKEINVPVFGV-------------------------IEPGVKEALKKSR 105 (254)
T ss_dssp HHHHHHHHHTTTCSEEEECCHHHHTTSHHHHHHHSSSCEEES-------------------------HHHHHHHHHHHCS
T ss_pred HHHHHHHHHHCCCCEEEEeCchhhHHHHHHHHHhCCCCEEee-------------------------eHHHHHHHHHccC
Confidence 344555566669999998766665455667777789999962 1222222 33456
Q ss_pred CcEEEEEEecCCcCcchHHHHHHHHHhcCcEEEEEEecCCCC---CC---C----hhHHHHHHHHHhcCCceEEEEEcch
Q 002371 159 WGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQ---SV---T----ETDVRNELVKVRMMEARVIVVHGYS 228 (930)
Q Consensus 159 w~~vaii~~d~~~g~~~~~~~~~~l~~~g~~i~~~~~~~~~~---~~---~----~~d~~~~l~~l~~~~~~viv~~~~~ 228 (930)
-++|+++......- ...+++.+++.|+++... ..+.-. .. + ...+...+.++.+. +|+||+.|..
T Consensus 106 ~~rigVlaT~~T~~---~~~y~~~l~~~g~~v~~~-~~~~~v~~ie~g~~~~~~~~~~l~~~~~~l~~~-~d~IILGCT~ 180 (254)
T 1b73_A 106 NKKIGVIGTPATVK---SGAYQRKLEEGGADVFAK-ACPLFAPLAEEGLLEGEITRKVVEHYLKEFKGK-IDTLILGCTH 180 (254)
T ss_dssp SCEEEEEECHHHHH---HCHHHHHHHTTSCEEEEE-ECCCCTTTSCGGGGSGGGHHHHHHHHSTTTTTT-CSEEEECCCC
T ss_pred CCEEEEEEChHHhh---hHHHHHHHHcCCCEEEec-CCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHhc-CCEEEECccC
Confidence 78999998553221 123456666778887532 222110 00 1 12344444555545 9999997765
No 280
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Probab=56.44 E-value=17 Score=38.05 Aligned_cols=59 Identities=14% Similarity=0.118 Sum_probs=50.5
Q ss_pred ccchhhHHHHHHHhhccccC--Ccc--cchhHHHHHHHHHHHHHhhhhhhhhhheeeeecccc
Q 002371 618 KQIVTVLWFSFSTMFFAHRE--NTV--STLGRVVLIIWLFVVLIITSSYTASLTSILTVQQLS 676 (930)
Q Consensus 618 ~~~~~~~~~~~~~l~~~~~~--~~~--s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~ 676 (930)
..+..++||++.++...|.. .|. ++.+|++..+-.++++++.+.-++-+.+-++.|..+
T Consensus 90 ~sf~~af~fSv~T~TTvGYGd~~p~~~~~~g~~l~~~~~l~G~~l~a~~~giv~ak~srp~~r 152 (340)
T 3sya_A 90 NGFVSAFLFSIETETTIGYGYRVITDKCPEGIILLLIQSVLGSIVNAFMVGCMFVKISQPKKR 152 (340)
T ss_dssp CSTTHHHHHHHHHHSCCCCSSSCBCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGG
T ss_pred cCHHHHHhhhheeeeeecCCCccCcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhc
Confidence 46889999999999877644 454 678999999999999999999999999999887754
No 281
>3r6u_A Choline-binding protein; substrate binding protein, ABC-transporter, extracellular, transport protein; 1.61A {Bacillus subtilis} SCOP: c.94.1.0 PDB: 3ppq_A 3ppo_A* 3ppp_A 3ppn_A 3ppr_A*
Probab=55.94 E-value=51 Score=33.59 Aligned_cols=90 Identities=6% Similarity=-0.005 Sum_probs=51.8
Q ss_pred CCCChHHhhhCC--CeEEEEeC------chhHHHHHHhcCCCccceEeCCCHHHHHHHHHcCCcEEEEccchhhHHHHhc
Q 002371 678 PIKGIDTLMTSN--DRVGYQVG------SFAENYLIEELSIPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSD 749 (930)
Q Consensus 678 ~i~sl~dL~~s~--~~i~~~~~------s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~ 749 (930)
.|+|++||.+.. ..+|...+ .-...+ .+.+++....+... +.....+++++|+.+++....+...+- +
T Consensus 130 ~l~sisDL~~~~~~~~~g~~~ef~~r~G~G~~~l-~~~YGl~~~~~~~~-~~g~~~~A~~~~~~~v~~~wsp~~~~~--~ 205 (284)
T 3r6u_A 130 HLETVSDVKKWAPQLKLGVDNYWMKLKGNGYQDF-TKTYGMTFGGTYPM-QIGLVYDAVKSGKMDIVLAYSTDGRIK--S 205 (284)
T ss_dssp TCCBSGGGGGGGGGCEEEECTTGGGCSSSSHHHH-HHHHCCCCSEEEEC-CGGGHHHHHHHTSCSEEEEETTCHHHH--H
T ss_pred CCCCHHHHHhhhhceeeccCcccccCchhHHHHH-HHHcCCCccccccc-CHHHHHHHHHcCCCeEEEEeCCCchhh--c
Confidence 789999998653 45666532 222333 45677654444444 444567889999988887665544332 1
Q ss_pred CcceEEeCC---ccccCccEEEecCC
Q 002371 750 HCQFSVRGQ---EFTKSGWGFAFPRD 772 (930)
Q Consensus 750 ~~~l~~~~~---~~~~~~~~~~~~k~ 772 (930)
.+++.+.+ .|..+....+++++
T Consensus 206 -~dL~~LeD~k~~fp~~~v~~vvr~~ 230 (284)
T 3r6u_A 206 -YGLKMLKDDKQFFPPYDCSPVVPEK 230 (284)
T ss_dssp -TTEEECBCTTCCSCCCBEEEEEEHH
T ss_pred -CCceEcCCCcccCCccceeEEEcHH
Confidence 24555543 23344455566655
No 282
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=55.89 E-value=29 Score=35.30 Aligned_cols=79 Identities=10% Similarity=0.032 Sum_probs=59.5
Q ss_pred cEEEEEEec--CCcCcchHHHHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchh----hHHH
Q 002371 160 GEVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSR----TGLM 233 (930)
Q Consensus 160 ~~vaii~~d--~~~g~~~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~----~~~~ 233 (930)
+.|+++..+ ++|.......+.+++++.|..+.....- .+...-...++.+.+.+.|.||+..... ....
T Consensus 16 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~-----~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~ 90 (298)
T 3tb6_A 16 KTIGVLTTYISDYIFPSIIRGIESYLSEQGYSMLLTSTN-----NNPDNERRGLENLLSQHIDGLIVEPTKSALQTPNIG 90 (298)
T ss_dssp CEEEEEESCSSSTTHHHHHHHHHHHHHHTTCEEEEEECT-----TCHHHHHHHHHHHHHTCCSEEEECCSSTTSCCTTHH
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeCC-----CChHHHHHHHHHHHHCCCCEEEEecccccccCCcHH
Confidence 799999864 6677888999999999999988764321 1245566778888889999999976432 3456
Q ss_pred HHHHHHHcCC
Q 002371 234 VFDVAQRLGM 243 (930)
Q Consensus 234 ~~~~a~~~g~ 243 (930)
.++++.+.|+
T Consensus 91 ~~~~~~~~~i 100 (298)
T 3tb6_A 91 YYLNLEKNGI 100 (298)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHhcCC
Confidence 7778888775
No 283
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=55.76 E-value=41 Score=31.53 Aligned_cols=67 Identities=18% Similarity=0.106 Sum_probs=49.9
Q ss_pred cCCcEEEEEEecCC------c-C---cchHHHHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcC-CceEEEEE
Q 002371 157 FGWGEVIAIFNDDD------Q-G---RNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMM-EARVIVVH 225 (930)
Q Consensus 157 ~~w~~vaii~~d~~------~-g---~~~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~-~~~viv~~ 225 (930)
+.--+|+||...|+ . | ......+.+.+++.|.++.....++.+ .+++...|.+..+. ++|+|+..
T Consensus 13 ~~~~rv~IittGde~~~~~~~~G~i~Dsn~~~L~~~l~~~G~~v~~~~iv~Dd----~~~I~~al~~a~~~~~~DlVitt 88 (178)
T 2pjk_A 13 PKSLNFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIENGHKIIGYSLVPDD----KIKILKAFTDALSIDEVDVIIST 88 (178)
T ss_dssp CCCCEEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHTTCEEEEEEEECSC----HHHHHHHHHHHHTCTTCCEEEEE
T ss_pred CCCCEEEEEEeCcccccccccCCeEeehHHHHHHHHHHHCCCEEEEEEEeCCC----HHHHHHHHHHHHhcCCCCEEEEC
Confidence 44568888886542 1 2 345678889999999999887777765 78888888887654 58999987
Q ss_pred cc
Q 002371 226 GY 227 (930)
Q Consensus 226 ~~ 227 (930)
+.
T Consensus 89 GG 90 (178)
T 2pjk_A 89 GG 90 (178)
T ss_dssp SC
T ss_pred CC
Confidence 53
No 284
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=55.67 E-value=31 Score=32.61 Aligned_cols=65 Identities=22% Similarity=0.263 Sum_probs=49.0
Q ss_pred CCcEEEEEEecCCc----CcchHHHHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCCceEEEEEc
Q 002371 158 GWGEVIAIFNDDDQ----GRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHG 226 (930)
Q Consensus 158 ~w~~vaii~~d~~~----g~~~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~ 226 (930)
.--+|+||...|+- -......+.+.+++.|.++.....++.+ .+.+...+.+....++|+|+..+
T Consensus 29 ~~~rvaIistGdEl~~G~~Dsn~~~L~~~L~~~G~~v~~~~iv~Dd----~~~I~~al~~a~~~~~DlVIttG 97 (185)
T 3rfq_A 29 VVGRALVVVVDDRTAHGDEDHSGPLVTELLTEAGFVVDGVVAVEAD----EVDIRNALNTAVIGGVDLVVSVG 97 (185)
T ss_dssp CCEEEEEEEECHHHHTTCCCSHHHHHHHHHHHTTEEEEEEEEECSC----HHHHHHHHHHHHHTTCSEEEEES
T ss_pred CCCEEEEEEECcccCCCCcCcHHHHHHHHHHHCCCEEEEEEEeCCC----HHHHHHHHHHHHhCCCCEEEECC
Confidence 34578888765432 2345678889999999999988888766 78888888887656799999875
No 285
>3hl0_A Maleylacetate reductase; structur genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE NAD EPE; 1.60A {Agrobacterium tumefaciens str}
Probab=55.48 E-value=14 Score=39.18 Aligned_cols=96 Identities=15% Similarity=0.205 Sum_probs=64.1
Q ss_pred HHHHHHHHcCCcEEEEEEecCCcCcchHHHHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCCceEEEEEcch
Q 002371 149 AIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS 228 (930)
Q Consensus 149 ai~~~l~~~~w~~vaii~~d~~~g~~~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~ 228 (930)
.+.++++.+|.+++.+|+..... +..+.+.+.|++.++.+ + ..+.++ .+.+.+...++.+++.++|+||-.+.+
T Consensus 24 ~l~~~l~~~g~~r~liVtd~~~~--~~~~~v~~~L~~~~~~v-~-~~v~~~--p~~~~v~~~~~~~~~~~~D~IIavGGG 97 (353)
T 3hl0_A 24 DVAEEIRRLGLSRALVLSTPQQK--GDAEALASRLGRLAAGV-F-SEAAMH--TPVEVTKTAVEAYRAAGADCVVSLGGG 97 (353)
T ss_dssp GHHHHHHHTTCCCEEEECCGGGH--HHHHHHHHHHGGGEEEE-E-CCCCTT--CBHHHHHHHHHHHHHTTCSEEEEEESH
T ss_pred HHHHHHHHhCCCEEEEEecCchh--hHHHHHHHHHhhCCcEE-e-cCcCCC--CcHHHHHHHHHHHhccCCCEEEEeCCc
Confidence 46777888999999999865443 45778888888766443 2 222223 346778888889999999999887655
Q ss_pred --hhHHHHHHHHHHcCCCCCceEEEEeCc
Q 002371 229 --RTGLMVFDVAQRLGMMDSGYVWIATTW 255 (930)
Q Consensus 229 --~~~~~~~~~a~~~g~~~~~~~~i~~~~ 255 (930)
-|..+++... .+ ..++-|-|..
T Consensus 98 s~iD~aK~iA~~--~~---~p~i~IPTTa 121 (353)
T 3hl0_A 98 STTGLGKAIALR--TD---AAQIVIPTTY 121 (353)
T ss_dssp HHHHHHHHHHHH--HC---CEEEEEECSS
T ss_pred HHHHHHHHHHhc--cC---CCEEEEeCCc
Confidence 4555555442 23 3455566654
No 286
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=55.04 E-value=12 Score=38.60 Aligned_cols=54 Identities=13% Similarity=0.203 Sum_probs=41.8
Q ss_pred cchhhHHHHHHHhhccccC--CcccchhH------HHHHHHHHHHHHhhhhhhhhhheeeee
Q 002371 619 QIVTVLWFSFSTMFFAHRE--NTVSTLGR------VVLIIWLFVVLIITSSYTASLTSILTV 672 (930)
Q Consensus 619 ~~~~~~~~~~~~l~~~~~~--~~~s~~~R------~l~~~w~~~~lil~~~Yta~L~s~Lt~ 672 (930)
.+.+++|+++.++...|.. .|.+..+| ++.++|+++++.+.++-.+.+..++..
T Consensus 224 ~~~da~y~~~vTltTvGyGd~~p~t~~g~~~~~y~~~~~~~il~Gl~~~a~~~~~i~~~~~~ 285 (309)
T 3um7_A 224 SKLEAIYFVIVTLTTVGFGDYVAGADPRQDSPAYQPLVWFWILLGLAYFASVLTTIGNWLRV 285 (309)
T ss_dssp CHHHHHHHHHHHHTTCCCSSCCTTCCTTCCCSTHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHhheeccccCCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999877533 56666665 699999999999888887777666544
No 287
>3s81_A Putative aspartate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta fold, cytosol; 1.80A {Salmonella enterica subsp} PDB: 3s7z_A
Probab=54.82 E-value=24 Score=35.64 Aligned_cols=39 Identities=15% Similarity=0.077 Sum_probs=29.6
Q ss_pred HHHHHHHHhcCcEEEEccCChhhHHHHHHhhhcCCCcEEE
Q 002371 81 IMGALQFMETDTLAIVGPQSAVMAHVLSHLANELQVPLLS 120 (930)
Q Consensus 81 ~~~a~~li~~~v~aiiGp~~S~~~~av~~~~~~~~vp~is 120 (930)
.+.+..|.+.|+.+|+=+-.+..+ ++-.+-+..++|+|.
T Consensus 89 ~~~~~~L~~~Gad~IVIaCNTah~-~l~~lr~~~~iPvig 127 (268)
T 3s81_A 89 ERYLHMLEDAGAECIVIPCNTAHY-WFDDLQNVAKARMIS 127 (268)
T ss_dssp HHHHHHHHHTTCSEEECSCSGGGG-GHHHHHHHCSSEEEC
T ss_pred HHHHHHHHHcCCCEEEEeCCCHHH-HHHHHHHHCCCCEEc
Confidence 455666667799999988777655 566777788999996
No 288
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=54.71 E-value=99 Score=31.10 Aligned_cols=119 Identities=13% Similarity=0.069 Sum_probs=73.4
Q ss_pred EEEeEEeecCCCcchHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhc--CcEEEEccCChhhH
Q 002371 27 LNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMET--DTLAIVGPQSAVMA 104 (930)
Q Consensus 27 I~IG~~~~l~~~~G~~~~~a~~lAve~iN~~ggil~g~~l~l~~~D~~~~~~~a~~~a~~li~~--~v~aiiGp~~S~~~ 104 (930)
=+||++..........-..|++-|+++. |+ ..... +.....+...+.+++.+++.. ++.||+... ...+
T Consensus 127 ~~I~~i~~~~~~~~~~R~~Gf~~al~~~----g~--~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~-d~~A 197 (289)
T 3k9c_A 127 RNIAHIDGADAPGGADRRAGFLAAMDRH----GL--SASAT--VVTGGTTETEGAEGMHTLLEMPTPPTAVVAFN-DRCA 197 (289)
T ss_dssp CSEEEECCTTSTTHHHHHHHHHHHHHHT----TC--GGGEE--EECCCSSHHHHHHHHHHHHTSSSCCSEEEESS-HHHH
T ss_pred CcEEEEeCCCCccHHHHHHHHHHHHHHC----CC--CCCcc--EEECCCCHHHHHHHHHHHHcCCCCCCEEEECC-hHHH
Confidence 3677776554334455677888888763 22 11222 334556788888899999885 789999853 4455
Q ss_pred HHHHHhhhcCC------CcEEEeecCCCCCCCCCCCeEEEccCChHHHHHHHHHHHHH
Q 002371 105 HVLSHLANELQ------VPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSY 156 (930)
Q Consensus 105 ~av~~~~~~~~------vp~is~~a~~~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~ 156 (930)
..+...+.+.+ |.++++.... +.....|-+-....+...++...++++..
T Consensus 198 ~g~~~al~~~g~~vP~di~vig~D~~~--~~~~~~p~lttv~~~~~~~g~~a~~~l~~ 253 (289)
T 3k9c_A 198 TGVLDLLVRSGRDVPADISVVGYDDSR--LARIPHVQMTTISQDATHMAEAAVDGALA 253 (289)
T ss_dssp HHHHHHHHHTTCCTTTTCEEEEEECCT--TTTCTTTCCEEEECCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCceEEEEECCHH--HHhcCCCCcceEecCHHHHHHHHHHHHHH
Confidence 55556555554 3478776542 33322344555666777777777776543
No 289
>3p6l_A Sugar phosphate isomerase/epimerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG; HET: CIT; 1.85A {Parabacteroides distasonis}
Probab=54.58 E-value=52 Score=32.77 Aligned_cols=94 Identities=9% Similarity=0.017 Sum_probs=69.3
Q ss_pred HHHHHHHHHHcCCcEEEEEEec------------CCcCcchHHHHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHH
Q 002371 147 MSAIAEMVSYFGWGEVIAIFND------------DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKV 214 (930)
Q Consensus 147 ~~ai~~~l~~~~w~~vaii~~d------------~~~g~~~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l 214 (930)
....++.++..|.+.|=+...+ ........+.+++.+++.|+++........ ....++...+...
T Consensus 24 ~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~~~~~~---~~~~~~~~~i~~A 100 (262)
T 3p6l_A 24 LTEALDKTQELGLKYIEIYPGHKLGGKWGDKVFDFNLDAQTQKEIKELAASKGIKIVGTGVYVA---EKSSDWEKMFKFA 100 (262)
T ss_dssp HHHHHHHHHHTTCCEEEECTTEECCGGGTTCEESTTCCHHHHHHHHHHHHHTTCEEEEEEEECC---SSTTHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEeecCCcccccccccccccccCCHHHHHHHHHHHHHcCCeEEEEeccCC---ccHHHHHHHHHHH
Confidence 3556777888999988776422 112234578999999999999876654432 2356788899999
Q ss_pred hcCCceEEEEEcchhhHHHHHHHHHHcCC
Q 002371 215 RMMEARVIVVHGYSRTGLMVFDVAQRLGM 243 (930)
Q Consensus 215 ~~~~~~viv~~~~~~~~~~~~~~a~~~g~ 243 (930)
+..+++.|+++...+....+...|++.|+
T Consensus 101 ~~lGa~~v~~~~~~~~~~~l~~~a~~~gv 129 (262)
T 3p6l_A 101 KAMDLEFITCEPALSDWDLVEKLSKQYNI 129 (262)
T ss_dssp HHTTCSEEEECCCGGGHHHHHHHHHHHTC
T ss_pred HHcCCCEEEecCCHHHHHHHHHHHHHhCC
Confidence 99999999998766667777778877775
No 290
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=54.46 E-value=17 Score=36.55 Aligned_cols=79 Identities=11% Similarity=-0.004 Sum_probs=58.1
Q ss_pred cEEEEEEec--CCcCcchHHHHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchhhHHHHHHH
Q 002371 160 GEVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDV 237 (930)
Q Consensus 160 ~~vaii~~d--~~~g~~~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~~~~~~~~~ 237 (930)
+.|+++..+ ++|.....+.+.+++++.|..+..... . .+.......++.+.+.++|.||+..........+++
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~----~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~ 77 (272)
T 3o74_A 3 RTLGFILPDLENPSYARIAKQLEQGARARGYQLLIASS-D----DQPDSERQLQQLFRARRCDALFVASCLPPEDDSYRE 77 (272)
T ss_dssp CEEEEEESCTTCHHHHHHHHHHHHHHHHTTCEEEEEEC-T----TCHHHHHHHHHHHHHTTCSEEEECCCCCSSCCHHHH
T ss_pred eEEEEEeCCCcChhHHHHHHHHHHHHHHCCCEEEEEeC-C----CCHHHHHHHHHHHHHcCCCEEEEecCccccHHHHHH
Confidence 578888864 667788899999999999998876432 2 225556677888888999999987654233556777
Q ss_pred HHHcCC
Q 002371 238 AQRLGM 243 (930)
Q Consensus 238 a~~~g~ 243 (930)
+.+.|+
T Consensus 78 ~~~~~i 83 (272)
T 3o74_A 78 LQDKGL 83 (272)
T ss_dssp HHHTTC
T ss_pred HHHcCC
Confidence 777775
No 291
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=54.04 E-value=37 Score=31.33 Aligned_cols=63 Identities=16% Similarity=0.134 Sum_probs=47.3
Q ss_pred EEEEEEecCC--cC---cchHHHHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcC-CceEEEEEcc
Q 002371 161 EVIAIFNDDD--QG---RNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMM-EARVIVVHGY 227 (930)
Q Consensus 161 ~vaii~~d~~--~g---~~~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~-~~~viv~~~~ 227 (930)
+++||...|+ .| ......+.+.+++.|.++.....++.+ .+.+...+.+..+. ++|+||..+.
T Consensus 3 ~v~Ii~tGdEl~~G~i~D~n~~~l~~~l~~~G~~v~~~~iv~Dd----~~~i~~~l~~~~~~~~~DlVittGG 71 (164)
T 2is8_A 3 RVGILTVSDKGFRGERQDTTHLAIREVLAGGPFEVAAYELVPDE----PPMIKKVLRLWADREGLDLILTNGG 71 (164)
T ss_dssp EEEEEEECHHHHHTSSCCCHHHHHHHHHTTSSEEEEEEEEECSC----HHHHHHHHHHHHHTSCCSEEEEESC
T ss_pred EEEEEEEcCcccCCCcccchHHHHHHHHHHCCCeEeEEEEcCCC----HHHHHHHHHHHHhcCCCCEEEEcCC
Confidence 6777775443 12 234578899999999999888778766 78888889888764 7999998753
No 292
>1h3d_A ATP-phosphoribosyltransferase; hisitidine biosynthesis, glycosyltransferase; HET: AMP TLA; 2.7A {Escherichia coli} SCOP: c.94.1.1 d.58.5.3 PDB: 1q1k_A*
Probab=53.98 E-value=65 Score=32.93 Aligned_cols=100 Identities=14% Similarity=0.065 Sum_probs=62.3
Q ss_pred CCCChHHhhhCCCeEEEEeCchhHHHHHHhcCCCccceEeC-CCHHHHHHHHHcCCcEEEEccchhhHHHHhcCcceEEe
Q 002371 678 PIKGIDTLMTSNDRVGYQVGSFAENYLIEELSIPKSRLVAL-GSPEEYAIALENRTVAAVVDERPYIDLFLSDHCQFSVR 756 (930)
Q Consensus 678 ~i~sl~dL~~s~~~i~~~~~s~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~~~l~~~ 756 (930)
.+.++++|. +++|+...-...+.||. +.+... .++.. .+.|- +..-|-.|++++-.....-+.++ +|.++
T Consensus 115 ~~~~~~~l~--g~RIATkyp~l~~~yf~-~~gi~~-~ii~l~GsvE~---aP~~GlADaIvDivsTG~TLraN--gL~~i 185 (299)
T 1h3d_A 115 AWDGPLSLN--GKRIATSYPHLLKRYLD-QKGISF-KSCLLNGSVEV---APRAGLADAICDLVSTGATLEAN--GLREV 185 (299)
T ss_dssp CCCCGGGGT--TCEEEESCHHHHHHHHH-HHTCCC-EEEECSSCTTH---HHHTTSCSEEEEEESSCHHHHHT--TEEEE
T ss_pred CCCChHHhC--CCEEEeCcHHHHHHHHH-HcCCcE-EEEECCCceee---ccCCCccceEEecccCHHHHHHC--CCEEe
Confidence 445677774 88999988888999995 455553 44444 44443 23447889999877666555444 46666
Q ss_pred CCccccCccEEEecCCC--cc-hhHHHHHHHhcc
Q 002371 757 GQEFTKSGWGFAFPRDS--PL-AIDMSTAILTLS 787 (930)
Q Consensus 757 ~~~~~~~~~~~~~~k~s--pl-~~~~n~~i~~l~ 787 (930)
+..+ ...-.++..|.+ |. .+.++..+.++.
T Consensus 186 e~I~-~SsA~LI~n~~s~~~~k~~~i~~l~~rl~ 218 (299)
T 1h3d_A 186 EVIY-RSKACLIQRDGEMEESKQQLIDKLLTRIQ 218 (299)
T ss_dssp EEEE-EECEEEEEESSCCCHHHHHHHHHHHHHHH
T ss_pred EEEE-eeEEEEEEeccccChhHHHHHHHHHHHHH
Confidence 5444 445567777776 22 245666666654
No 293
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=53.95 E-value=39 Score=35.30 Aligned_cols=85 Identities=7% Similarity=0.018 Sum_probs=57.2
Q ss_pred HHHHcCCcEEEEEEec--CCcCcchHHHHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchhh
Q 002371 153 MVSYFGWGEVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRT 230 (930)
Q Consensus 153 ~l~~~~w~~vaii~~d--~~~g~~~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~~ 230 (930)
-++...-+.|+++..+ ++|.......+.+++++.|..+..... . .+...-...++.+.+.+.|.||+......
T Consensus 56 ~l~~~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~----~~~~~~~~~~~~l~~~~vdGiIi~~~~~~ 130 (339)
T 3h5o_A 56 TLASAKSRTVLVLIPSLANTVFLETLTGIETVLDAAGYQMLIGNS-H----YDAGQELQLLRAYLQHRPDGVLITGLSHA 130 (339)
T ss_dssp -------CEEEEEESCSTTCTTHHHHHHHHHHHHHTTCEEEEEEC-T----TCHHHHHHHHHHHHTTCCSEEEEECSCCC
T ss_pred hhhcCCCCEEEEEeCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeC-C----CChHHHHHHHHHHHcCCCCEEEEeCCCCC
Confidence 3344445689998864 678888999999999999998875321 1 22455667788888899999998764432
Q ss_pred HHHHHHHHHHcCC
Q 002371 231 GLMVFDVAQRLGM 243 (930)
Q Consensus 231 ~~~~~~~a~~~g~ 243 (930)
. ..+..+.+.|+
T Consensus 131 ~-~~~~~l~~~~i 142 (339)
T 3h5o_A 131 E-PFERILSQHAL 142 (339)
T ss_dssp T-THHHHHHHTTC
T ss_pred H-HHHHHHhcCCC
Confidence 2 45666777675
No 294
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=53.93 E-value=19 Score=36.92 Aligned_cols=81 Identities=9% Similarity=-0.041 Sum_probs=58.9
Q ss_pred cEEEEEEec--CCcCcchHHHHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCCceEEEEEcch-hhHHHHHH
Q 002371 160 GEVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS-RTGLMVFD 236 (930)
Q Consensus 160 ~~vaii~~d--~~~g~~~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~-~~~~~~~~ 236 (930)
.+|+++..+ ++|.......+.+++++.|.++.....-... +.......++++.+.++|.||+.... ......++
T Consensus 4 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~---~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~~ 80 (297)
T 3rot_A 4 DKYYLITHGSQDPYWTSLFQGAKKAAEELKVDLQILAPPGAN---DVPKQVQFIESALATYPSGIATTIPSDTAFSKSLQ 80 (297)
T ss_dssp CEEEEECSCCCSHHHHHHHHHHHHHHHHHTCEEEEECCSSSC---CHHHHHHHHHHHHHTCCSEEEECCCCSSTTHHHHH
T ss_pred EEEEEEecCCCCchHHHHHHHHHHHHHHhCcEEEEECCCCcC---CHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHH
Confidence 467888754 6788888999999999999998764321111 25556678888888999999986543 44466788
Q ss_pred HHHHcCC
Q 002371 237 VAQRLGM 243 (930)
Q Consensus 237 ~a~~~g~ 243 (930)
++.+.|+
T Consensus 81 ~~~~~gi 87 (297)
T 3rot_A 81 RANKLNI 87 (297)
T ss_dssp HHHHHTC
T ss_pred HHHHCCC
Confidence 8888776
No 295
>3o66_A Glycine betaine/carnitine/choline ABC transporter; structural genomics, PSI-2, protein structure initiative; HET: PGE; 1.86A {Staphylococcus aureus subsp} SCOP: c.94.1.0
Probab=53.91 E-value=47 Score=33.82 Aligned_cols=90 Identities=10% Similarity=0.050 Sum_probs=51.8
Q ss_pred CCCChHHhhhCC--CeEEEEeC------chhHHHHHHhcCCCccceEeCCCHHHHHHHHHcCCcEEEEccchhhHHHHhc
Q 002371 678 PIKGIDTLMTSN--DRVGYQVG------SFAENYLIEELSIPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSD 749 (930)
Q Consensus 678 ~i~sl~dL~~s~--~~i~~~~~------s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~ 749 (930)
.|+|++||.+.. ..+|...+ .-...+ .+.+++....+... +.....+++++|+.+++....+-..+- +
T Consensus 129 ~l~sisDL~~~~~~~~~g~~~ef~~r~gdG~~~l-~~~Ygl~~~~~~~~-d~g~~~~A~~~~~~~v~~~wsp~~~~~--~ 204 (282)
T 3o66_A 129 HLETVSDLAKHSKDLRLGMDSSWMNRKGDGYEGF-KKEYGFDFGTVRPM-QIGLVYDALNTEKLDVALGYSTDGRIA--A 204 (282)
T ss_dssp TCSBSGGGTTTGGGCEEEEEGGGCC--CCSHHHH-HHHHCCCCSEEEEE-CGGGHHHHHHTTSCSEEEEETTCHHHH--H
T ss_pred CCCCHHHHHhcccceEEecCcccccCchhHHHHH-HHHcCCCCcccccc-CHHHHHHHHHcCCCeEEEEeCCCchhh--h
Confidence 799999998643 35776542 223333 45677654444444 444678899999998887765544332 1
Q ss_pred CcceEEeCC---ccccCccEEEecCC
Q 002371 750 HCQFSVRGQ---EFTKSGWGFAFPRD 772 (930)
Q Consensus 750 ~~~l~~~~~---~~~~~~~~~~~~k~ 772 (930)
.++..+.+ .|..+....+++++
T Consensus 205 -~dL~~LeD~k~~fp~~~~~~vvr~~ 229 (282)
T 3o66_A 205 -YDLKVLKDDKQFFPPYAASAVATNE 229 (282)
T ss_dssp -TTCEECBCTTCCSCCCBEEEEEEHH
T ss_pred -cCceEcCCCcccccccceeEEEcHH
Confidence 13555533 23333445556655
No 296
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=53.77 E-value=42 Score=33.92 Aligned_cols=84 Identities=6% Similarity=-0.120 Sum_probs=54.2
Q ss_pred HHHcCCcEEEEEEec----CCcCcchHHHHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchh
Q 002371 154 VSYFGWGEVIAIFND----DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSR 229 (930)
Q Consensus 154 l~~~~w~~vaii~~d----~~~g~~~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~ 229 (930)
++...-++|+++..+ ++|.......+.+++++.|.++... ... .+.......++++.+.+.|.||+.....
T Consensus 14 L~~~~~~~Ig~i~~~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~---~~~--~~~~~~~~~~~~l~~~~vdgii~~~~~~ 88 (296)
T 3brq_A 14 LSAKSTQTLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQLLLA---DGK--HSAEEERQAIQYLLDLRCDAIMIYPRFL 88 (296)
T ss_dssp -----CCEEEEEECGGGCC--CHHHHHHHHHHHHHHTTCEEEEE---CCT--TSHHHHHHHHHHHHHTTCSEEEEECSSS
T ss_pred hhcCCCceEEEEeCCcccCCchHHHHHHHHHHHHHHCCCEEEEE---eCC--CCHHHHHHHHHHHHhcCCCEEEEecCCC
Confidence 444445689998854 5677788899999999999987653 222 2245556678888888999999876532
Q ss_pred hHHHHHHHHHH-cCC
Q 002371 230 TGLMVFDVAQR-LGM 243 (930)
Q Consensus 230 ~~~~~~~~a~~-~g~ 243 (930)
.. ..++.+.+ .|.
T Consensus 89 ~~-~~~~~l~~~~~i 102 (296)
T 3brq_A 89 SV-DEIDDIIDAHSQ 102 (296)
T ss_dssp CH-HHHHHHHHTCSS
T ss_pred Ch-HHHHHHHhcCCC
Confidence 22 34566666 564
No 297
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=53.72 E-value=67 Score=28.48 Aligned_cols=86 Identities=10% Similarity=0.074 Sum_probs=55.9
Q ss_pred cEEEEEEecCCcCcchHHHHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCCceEEEEEcch----hhHHHHH
Q 002371 160 GEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS----RTGLMVF 235 (930)
Q Consensus 160 ~~vaii~~d~~~g~~~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~----~~~~~~~ 235 (930)
.+|.+.....+.-.-+...+...|+..|.++.+--...+ . ...++.+++.+||+|.+++.. .....++
T Consensus 4 ~~vvla~~~~d~HdiG~~~v~~~l~~~G~~Vi~lG~~~p-----~---e~~v~~a~~~~~d~v~lS~~~~~~~~~~~~~i 75 (137)
T 1ccw_A 4 KTIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNIGVLSP-----Q---ELFIKAAIETKADAILVSSLYGQGEIDCKGLR 75 (137)
T ss_dssp CEEEEEEETTCCCCHHHHHHHHHHHHTTCEEEEEEEEEC-----H---HHHHHHHHHHTCSEEEEEECSSTHHHHHTTHH
T ss_pred CEEEEEeCCCchhHHHHHHHHHHHHHCCCEEEECCCCCC-----H---HHHHHHHHhcCCCEEEEEecCcCcHHHHHHHH
Confidence 355555555554455677888899999999986543221 2 345666666789999998654 3355667
Q ss_pred HHHHHcCCCCCceEEEEeC
Q 002371 236 DVAQRLGMMDSGYVWIATT 254 (930)
Q Consensus 236 ~~a~~~g~~~~~~~~i~~~ 254 (930)
++.++.|.. .-.+|+++.
T Consensus 76 ~~l~~~g~~-~i~v~vGG~ 93 (137)
T 1ccw_A 76 QKCDEAGLE-GILLYVGGN 93 (137)
T ss_dssp HHHHHTTCT-TCEEEEEES
T ss_pred HHHHhcCCC-CCEEEEECC
Confidence 788887764 234555543
No 298
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=53.59 E-value=31 Score=34.98 Aligned_cols=79 Identities=5% Similarity=0.039 Sum_probs=56.1
Q ss_pred cEEEEEEec--CCcCcchHHHHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCCceEEEEEcch-hhHHHHHH
Q 002371 160 GEVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS-RTGLMVFD 236 (930)
Q Consensus 160 ~~vaii~~d--~~~g~~~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~-~~~~~~~~ 236 (930)
++|+++..+ ++|.......+.+++++.|.++..... . .+.......++.+.+.++|.||+.... ......++
T Consensus 3 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~---~--~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~~ 77 (290)
T 2fn9_A 3 GKMAIVISTLNNPWFVVLAETAKQRAEQLGYEATIFDS---Q--NDTAKESAHFDAIIAAGYDAIIFNPTDADGSIANVK 77 (290)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHTTCEEEEEEC---T--TCHHHHHHHHHHHHHTTCSEEEECCSCTTTTHHHHH
T ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEeCC---C--CCHHHHHHHHHHHHHcCCCEEEEecCChHHHHHHHH
Confidence 478888864 677788889999999999998875321 1 224455567788888899999987543 33345677
Q ss_pred HHHHcCC
Q 002371 237 VAQRLGM 243 (930)
Q Consensus 237 ~a~~~g~ 243 (930)
.+.+.|.
T Consensus 78 ~~~~~~i 84 (290)
T 2fn9_A 78 RAKEAGI 84 (290)
T ss_dssp HHHHTTC
T ss_pred HHHHCCC
Confidence 7777665
No 299
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=53.45 E-value=84 Score=25.07 Aligned_cols=66 Identities=14% Similarity=0.233 Sum_probs=46.0
Q ss_pred ccCChHHHHHHHHHHHHHcCCcEEEEEEecCCcCcchHHHHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHh
Q 002371 139 TAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVR 215 (930)
Q Consensus 139 ~~p~~~~~~~ai~~~l~~~~w~~vaii~~d~~~g~~~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~ 215 (930)
..-.|...++....+++.+|..-..+||+.| ++..+.|..+....|.++-.. . ..+||...|.++-
T Consensus 56 vvvddkewaekairfvkslgaqvliiiydqd---qnrleefsrevrrrgfevrtv---t-----spddfkkslerli 121 (134)
T 2l69_A 56 VVVDDKEWAEKAIRFVKSLGAQVLIIIYDQD---QNRLEEFSREVRRRGFEVRTV---T-----SPDDFKKSLERLI 121 (134)
T ss_dssp EECSSHHHHHHHHHHHHHHCCCCEEEEECSC---HHHHHHHHHHHHHTTCCEEEE---S-----SHHHHHHHHHHHH
T ss_pred EEEccHHHHHHHHHHHHhcCCeEEEEEEeCc---hhHHHHHHHHHHhcCceEEEe---c-----ChHHHHHHHHHHH
Confidence 3445667788888888888888888888544 467788888888888876532 1 2567776666653
No 300
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=51.33 E-value=27 Score=35.82 Aligned_cols=87 Identities=7% Similarity=-0.056 Sum_probs=55.4
Q ss_pred HHHHHHcCCcEEEEEEec--CCcCcchHHHHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCCceEEEEEcch
Q 002371 151 AEMVSYFGWGEVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS 228 (930)
Q Consensus 151 ~~~l~~~~w~~vaii~~d--~~~g~~~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~ 228 (930)
|+-++...-+.|+++..+ ++|.......+.+++++.|..+.....- .+...-...++.+.+.+.|.||+....
T Consensus 7 Ar~L~~~~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~-----~~~~~~~~~~~~l~~~~vdgiI~~~~~ 81 (303)
T 3kke_A 7 ARALRHSRSGTIGLIVPDVNNAVFADMFSGVQMAASGHSTDVLLGQID-----APPRGTQQLSRLVSEGRVDGVLLQRRE 81 (303)
T ss_dssp ----------CEEEEESCTTSTTHHHHHHHHHHHHHHTTCCEEEEECC-----STTHHHHHHHHHHHSCSSSEEEECCCT
T ss_pred HHHHhhCCCCEEEEEeCCCcChHHHHHHHHHHHHHHHCCCEEEEEeCC-----CChHHHHHHHHHHHhCCCcEEEEecCC
Confidence 344444455678998864 6677888999999999999988754321 124455677888989999999997654
Q ss_pred hhHHHHHHHHHHcCC
Q 002371 229 RTGLMVFDVAQRLGM 243 (930)
Q Consensus 229 ~~~~~~~~~a~~~g~ 243 (930)
......+..+.+ |+
T Consensus 82 ~~~~~~~~~l~~-~i 95 (303)
T 3kke_A 82 DFDDDMLAAVLE-GV 95 (303)
T ss_dssp TCCHHHHHHHHT-TS
T ss_pred CCcHHHHHHHhC-CC
Confidence 332225666666 65
No 301
>3jzd_A Iron-containing alcohol dehydrogenase; YP_298327.1, putative alcohol dehedrogenase, structural GENO joint center for structural genomics; HET: MSE NAD PG4 P6G PGE; 2.10A {Ralstonia eutropha}
Probab=51.29 E-value=15 Score=39.12 Aligned_cols=97 Identities=20% Similarity=0.217 Sum_probs=64.2
Q ss_pred HHHHHHHHHcCCcEEEEEEecCCcCcchHHHHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCCceEEEEEcc
Q 002371 148 SAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY 227 (930)
Q Consensus 148 ~ai~~~l~~~~w~~vaii~~d~~~g~~~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~ 227 (930)
..+.++++.+|.+++.+|+....+ +..+.+.+.|++.++.+ + ....++ .+.+.....++.+++.++|+||-.+.
T Consensus 25 ~~l~~~l~~~g~~r~liVtd~~~~--~~~~~v~~~L~~~~~~~-f-~~v~~~--p~~~~v~~~~~~~~~~~~D~IIavGG 98 (358)
T 3jzd_A 25 SQVAAEVERLGAKRALVLCTPNQQ--AEAERIADLLGPLSAGV-Y-AGAVMH--VPIESARDATARAREAGADCAVAVGG 98 (358)
T ss_dssp GGHHHHHHHTTCSCEEEECCGGGH--HHHHHHHHHHGGGEEEE-E-CCCCTT--CBHHHHHHHHHHHHHHTCSEEEEEES
T ss_pred HHHHHHHHHhCCCeEEEEeCCcHH--HHHHHHHHHhccCCEEE-e-cCCcCC--CCHHHHHHHHHHhhccCCCEEEEeCC
Confidence 346677888999999999865543 35677888888765432 2 222222 34677888888888899999998766
Q ss_pred h--hhHHHHHHHHHHcCCCCCceEEEEeCc
Q 002371 228 S--RTGLMVFDVAQRLGMMDSGYVWIATTW 255 (930)
Q Consensus 228 ~--~~~~~~~~~a~~~g~~~~~~~~i~~~~ 255 (930)
+ -|..+++... .+ ..++-|-|..
T Consensus 99 GsviD~aK~iA~~--~~---~p~i~IPTT~ 123 (358)
T 3jzd_A 99 GSTTGLGKAIALE--TG---MPIVAIPTTY 123 (358)
T ss_dssp HHHHHHHHHHHHH--HC---CCEEEEECSS
T ss_pred cHHHHHHHHHHhc--cC---CCEEEEeCCc
Confidence 5 4556665442 23 3456666654
No 302
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=51.23 E-value=39 Score=35.53 Aligned_cols=85 Identities=11% Similarity=0.011 Sum_probs=56.4
Q ss_pred HHHHcCCcEEEEEEec--CCcCcchHHHHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchhh
Q 002371 153 MVSYFGWGEVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRT 230 (930)
Q Consensus 153 ~l~~~~w~~vaii~~d--~~~g~~~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~~ 230 (930)
-++...-+.|+++..+ ++|.......+.+++++.|..+..... . .+...-...++.+.+.+.|.||+......
T Consensus 64 ~l~~~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~----~~~~~~~~~~~~l~~~~vdGiI~~~~~~~ 138 (355)
T 3e3m_A 64 SLTTKRSGFVGLLLPSLNNLHFAQTAQSLTDVLEQGGLQLLLGYT-A----YSPEREEQLVETMLRRRPEAMVLSYDGHT 138 (355)
T ss_dssp -------CEEEEEESCSBCHHHHHHHHHHHHHHHHTTCEEEEEEC-T----TCHHHHHHHHHHHHHTCCSEEEEECSCCC
T ss_pred hhhcCCCCEEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeC-C----CChHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence 3444445689998864 567777889999999999999875421 1 12455567788888899999999765433
Q ss_pred HHHHHHHHHHcCC
Q 002371 231 GLMVFDVAQRLGM 243 (930)
Q Consensus 231 ~~~~~~~a~~~g~ 243 (930)
. ..++.+.+.|+
T Consensus 139 ~-~~~~~l~~~~i 150 (355)
T 3e3m_A 139 E-QTIRLLQRASI 150 (355)
T ss_dssp H-HHHHHHHHCCS
T ss_pred H-HHHHHHHhCCC
Confidence 2 55677777775
No 303
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=51.18 E-value=34 Score=25.66 Aligned_cols=11 Identities=27% Similarity=0.558 Sum_probs=6.8
Q ss_pred chhhhHHHHHh
Q 002371 864 SRSARLQTFLS 874 (930)
Q Consensus 864 ~~~~~~~~~~~ 874 (930)
.|-+.+|++++
T Consensus 42 eRMSQikrlLs 52 (70)
T 2klu_A 42 ERMSQIKRLLS 52 (70)
T ss_dssp TTSSHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 45556777763
No 304
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=51.09 E-value=35 Score=35.87 Aligned_cols=85 Identities=4% Similarity=-0.132 Sum_probs=51.3
Q ss_pred HHcCCcEEEEEEec--CCcCcchHHHHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchhhHH
Q 002371 155 SYFGWGEVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGL 232 (930)
Q Consensus 155 ~~~~w~~vaii~~d--~~~g~~~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~~~~ 232 (930)
....-+.|+++..+ ++|.......+.+++++.|..+..... . . .........++.+...+.|.||+........
T Consensus 57 ~~~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~-~--~~~~~~~~~l~~l~~~~vdGiIi~~~~~~~~ 132 (349)
T 1jye_A 57 AGKQSLLIGVATSSLALHAPSQIVAAILSRADQLGASVVVSMV-E-R--SGVEACKTAVHNLLAQRVSGLIINYPLDDQD 132 (349)
T ss_dssp -----CEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEEC-C-S--SSHHHHHHHHHHHHTTTCSCEEEESCCCHHH
T ss_pred hcCCCCEEEEEeCCCCcccHHHHHHHHHHHHHHcCCEEEEEeC-C-C--CcHHHHHHHHHHHHHCCCCEEEEecCCCChh
Confidence 33344688988865 566677888899999999998875422 1 1 1134445677888888999999874322222
Q ss_pred HHHHHHHHcCC
Q 002371 233 MVFDVAQRLGM 243 (930)
Q Consensus 233 ~~~~~a~~~g~ 243 (930)
.+...+.+.|+
T Consensus 133 ~~~~~~~~~~i 143 (349)
T 1jye_A 133 AIAVEAACTNV 143 (349)
T ss_dssp HHHHHHHTTTS
T ss_pred HHHHHHhhCCC
Confidence 23334444453
No 305
>3lr1_A Tungstate ABC transporter, periplasmic tungstate- binding protein; the tungstate ABC transporter, structural genomics, PSI, MCSG; 1.80A {Geobacter sulfurreducens}
Probab=51.07 E-value=10 Score=37.64 Aligned_cols=75 Identities=9% Similarity=-0.019 Sum_probs=52.3
Q ss_pred EEEeHHHHHHHHHHCCCcccEEEEeCCCCCCCCCHHHHHHHHHcCcccEEEecEEEecCcc---ceeeecccccccceEE
Q 002371 488 HGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGDIAIVTNRT---KAVDFTQPYIESGLVV 564 (930)
Q Consensus 488 ~G~~~dll~~l~~~ln~~~~~~~~~~~~~~~n~~~~~l~~~l~~g~~D~~~~~~~~t~~R~---~~vdfs~p~~~~~~~~ 564 (930)
.|+.-+|+..+.++.|.++.+.+ +.-..++.++.+|.+|+.+..-....+.. ....-..++....+++
T Consensus 18 ~~ll~~L~~~Fek~~gv~V~~~~---------~gSg~ll~qi~~G~aDV~isa~~~~~~~l~~~g~~~~~~~~~~n~lVl 88 (236)
T 3lr1_A 18 SGLLKVLLPPFEKKNNVKVDVIA---------VGTGQALKLGEAGDVDVVFVHARKLEDKFVADGFGVNRKDVMYNDFVI 88 (236)
T ss_dssp HCHHHHHHHHHHHHHTCEEEEEE---------ECHHHHHHHHHTTSCSEEEECCHHHHHHHHHTTSEEEEEEEEECCEEE
T ss_pred hHHHHHHHHHHHHHhCCeEEEEE---------cChHHHHHHHhcCCCCEEeecCchhHHHHHhcCCCcceEEEEcCcEEE
Confidence 46677889999988886655554 34677899999999999876433222211 1112246889999999
Q ss_pred EEeccCC
Q 002371 565 VAPVRKL 571 (930)
Q Consensus 565 ~v~~~~~ 571 (930)
++|+..+
T Consensus 89 V~P~~~P 95 (236)
T 3lr1_A 89 VGPKNDP 95 (236)
T ss_dssp EECTTCT
T ss_pred EEECCCh
Confidence 9998764
No 306
>3dmy_A Protein FDRA; predicted actyl-COA synthetase, nysgrc, PSI-II, STRU genomics, protein structure initiative; 2.07A {Escherichia coli}
Probab=50.50 E-value=2.2e+02 Score=31.23 Aligned_cols=145 Identities=14% Similarity=0.051 Sum_probs=87.8
Q ss_pred ChHHHHHHHHHHHhcCcEEEE--ccCChhhHHHHHHhhhcCCCcEEEeecCCCCCCCCCCCeEEEccCChHHHHHHHHHH
Q 002371 76 NGFLSIMGALQFMETDTLAIV--GPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEM 153 (930)
Q Consensus 76 ~~~~a~~~a~~li~~~v~aii--Gp~~S~~~~av~~~~~~~~vp~is~~a~~~~ls~~~~~~~fr~~p~~~~~~~ai~~~ 153 (930)
.+..+...+.++.+.|+.+|| .+..-.....+..++.++++.+|.|.+ ..+.... +......
T Consensus 45 Pa~~v~~~v~e~~~~Gv~~viis~Gf~~~~~~~l~~~A~~~g~rliGPNc--G~~~~~~----~~~~f~~---------- 108 (480)
T 3dmy_A 45 AGEYAAELANQALDRNLNVMMFSDNVTLEDEIQLKTRAREKGLLVMGPDC--GTSMIAG----TPLAFAN---------- 108 (480)
T ss_dssp CHHHHHHHHHHHHHTTCEEEECCCCCCHHHHHHHHHHHHHTTCCEECSSC--CEEEETT----EEEESCC----------
T ss_pred CHHHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEecCc--cccccCC----ccccccC----------
Confidence 455666777778877666444 222222334567788888999988765 2111111 1111111
Q ss_pred HHHcCCcEEEEEEecCCcCcchHHHHHHHHHhcCcEEEEEEecCCCC---CCChhHHHHHHHHHhc-CCceEEEEEcch-
Q 002371 154 VSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQ---SVTETDVRNELVKVRM-MEARVIVVHGYS- 228 (930)
Q Consensus 154 l~~~~w~~vaii~~d~~~g~~~~~~~~~~l~~~g~~i~~~~~~~~~~---~~~~~d~~~~l~~l~~-~~~~viv~~~~~- 228 (930)
.+.--+|++|.+... +...+.+.+.+.|+-+.....+-... ...+.++...|+-+.+ .++++|+++..+
T Consensus 109 --~~~~G~vaivSqSGa----l~~~i~~~~~~~g~G~S~~Vs~Gn~~l~~~i~dv~~~D~l~~l~~Dp~T~~I~ly~E~~ 182 (480)
T 3dmy_A 109 --VMPEGNIGVIGASGT----GIQELCSQIALAGEGITHAIGLGGRDLSREVGGISALTALEMLSADEKSEVLAFVSKPP 182 (480)
T ss_dssp --CCCEEEEEEEESCSH----HHHHHHHHHHHTTCCEEEEEECCTTTTSTTTTTHHHHHHHHHHHTCTTCCEEEEEESCC
T ss_pred --CCCCCCEEEEeccHH----HHHHHHHHHHHcCCCceEEEEcCCCccccccCCCCHHHHHHHHhcCCCCCEEEEEEecC
Confidence 012458999986653 44556677788888877665553220 0146678888888876 568999998743
Q ss_pred --hhHHHHHHHHHHcC
Q 002371 229 --RTGLMVFDVAQRLG 242 (930)
Q Consensus 229 --~~~~~~~~~a~~~g 242 (930)
..+..|++.+++.+
T Consensus 183 ~e~~~~~f~~~ar~~~ 198 (480)
T 3dmy_A 183 AEAVRLKIVNAMKATG 198 (480)
T ss_dssp CHHHHHHHHHHHHHHC
T ss_pred CcHHHHHHHHHHHhCC
Confidence 23478998888643
No 307
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=49.93 E-value=29 Score=35.24 Aligned_cols=82 Identities=4% Similarity=-0.117 Sum_probs=56.8
Q ss_pred HcCCcEEEEEEec-------CCcCcchHHHHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCCceEEEEEcch
Q 002371 156 YFGWGEVIAIFND-------DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS 228 (930)
Q Consensus 156 ~~~w~~vaii~~d-------~~~g~~~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~ 228 (930)
.-+-++|+++..+ ++|.......+.+++++.|..+.. +... .........++.+.+.+.|.||+....
T Consensus 5 ~~~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~---~~~~--~~~~~~~~~~~~~~~~~vdgiIi~~~~ 79 (292)
T 3k4h_A 5 NQTTKTLGLVMPSSASKAFQNPFFPEVIRGISSFAHVEGYALYM---STGE--TEEEIFNGVVKMVQGRQIGGIILLYSR 79 (292)
T ss_dssp --CCCEEEEECSSCHHHHTTSTHHHHHHHHHHHHHHHTTCEEEE---CCCC--SHHHHHHHHHHHHHTTCCCEEEESCCB
T ss_pred cCCCCEEEEEecCCccccccCHHHHHHHHHHHHHHHHcCCEEEE---EeCC--CCHHHHHHHHHHHHcCCCCEEEEeCCC
Confidence 3345688888765 567778889999999999998764 2222 223445667788888999999986544
Q ss_pred hhHHHHHHHHHHcCC
Q 002371 229 RTGLMVFDVAQRLGM 243 (930)
Q Consensus 229 ~~~~~~~~~a~~~g~ 243 (930)
.. ...++.+.+.|+
T Consensus 80 ~~-~~~~~~l~~~~i 93 (292)
T 3k4h_A 80 EN-DRIIQYLHEQNF 93 (292)
T ss_dssp TT-CHHHHHHHHTTC
T ss_pred CC-hHHHHHHHHCCC
Confidence 32 256777777775
No 308
>3fd3_A Chromosome replication initiation inhibitor prote; structural genomics, LYSR, PSI-2, structure initiative; HET: MSE P33 PG4; 1.70A {Agrobacterium tumefaciens str}
Probab=49.81 E-value=1.2e+02 Score=28.01 Aligned_cols=68 Identities=10% Similarity=-0.020 Sum_probs=41.8
Q ss_pred EEeHHHHHHHHHHCCCcccEEEEeCCCCCCCCCHHHHHHHHHcCcccEEEecEEEecCccceeeecccccccceEEEEec
Q 002371 489 GYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGDIAIVTNRTKAVDFTQPYIESGLVVVAPV 568 (930)
Q Consensus 489 G~~~dll~~l~~~ln~~~~~~~~~~~~~~~n~~~~~l~~~l~~g~~D~~~~~~~~t~~R~~~vdfs~p~~~~~~~~~v~~ 568 (930)
.+-.+++..+.++.+ ++++... ++..++.+.+.+|..|+++..- +.....+. +.++....++++++.
T Consensus 15 ~~l~~~l~~f~~~~~--v~l~l~~-------~~~~~~~~~l~~g~d~~~i~~~---~~~~~~l~-~~~l~~~~~~~v~~~ 81 (208)
T 3fd3_A 15 TWFLDAVSKFTGGSD--YLVNIAV-------DDQDHTVEWLRGGRVLAAVTAH---DKPVQGCR-VTPLGVLRYHATASP 81 (208)
T ss_dssp TTHHHHHHHHHHTSS--CEEEEEE-------CCSSCHHHHHHTTSCSEEEESC---CSCCTTCE-EEEEEEEEEEEEECH
T ss_pred HHHHHHHHHHHhhcC--eEEEEEe-------CCcHhHHHHHhcCcceEEEecC---CCCCCCce-EEEccceEEEEEECh
Confidence 345678889998886 5565554 4456788999999655544321 11112222 456677777777754
Q ss_pred c
Q 002371 569 R 569 (930)
Q Consensus 569 ~ 569 (930)
.
T Consensus 82 ~ 82 (208)
T 3fd3_A 82 D 82 (208)
T ss_dssp H
T ss_pred H
Confidence 3
No 309
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=49.50 E-value=23 Score=36.41 Aligned_cols=87 Identities=2% Similarity=-0.113 Sum_probs=57.1
Q ss_pred HHHHHHcCCcEEEEEEec-------CCcCcchHHHHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCCceEEE
Q 002371 151 AEMVSYFGWGEVIAIFND-------DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIV 223 (930)
Q Consensus 151 ~~~l~~~~w~~vaii~~d-------~~~g~~~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv 223 (930)
++-++...-+.|+++..+ ++|.......+.+++++.|..+... ... .+.......++.+.+.+.|.||
T Consensus 14 Ar~L~~~~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~---~~~--~~~~~~~~~~~~l~~~~vdgiI 88 (305)
T 3huu_A 14 ARTLITNKTLTIGLIQKSSAPEIRQNPFNSDVLNGINQACNVRGYSTRMT---VSE--NSGDLYHEVKTMIQSKSVDGFI 88 (305)
T ss_dssp -------CCCEEEEECSCCSHHHHTSHHHHHHHHHHHHHHHHHTCEEEEC---CCS--SHHHHHHHHHHHHHTTCCSEEE
T ss_pred HHHhhhCCCCEEEEEeCCCccccccCcHHHHHHHHHHHHHHHCCCEEEEE---eCC--CChHHHHHHHHHHHhCCCCEEE
Confidence 344455556789999866 5677778889999999999987752 222 2234456678888889999999
Q ss_pred EEcchhhHHHHHHHHHHcCC
Q 002371 224 VHGYSRTGLMVFDVAQRLGM 243 (930)
Q Consensus 224 ~~~~~~~~~~~~~~a~~~g~ 243 (930)
+...... ...++.+.+.|+
T Consensus 89 i~~~~~~-~~~~~~l~~~~i 107 (305)
T 3huu_A 89 LLYSLKD-DPIEHLLNEFKV 107 (305)
T ss_dssp ESSCBTT-CHHHHHHHHTTC
T ss_pred EeCCcCC-cHHHHHHHHcCC
Confidence 8754432 256777777775
No 310
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=48.81 E-value=15 Score=37.93 Aligned_cols=53 Identities=15% Similarity=0.177 Sum_probs=46.5
Q ss_pred cchhhHHHHHHHhhccc--cCCcccchhHHHHHHHHHHHHHhhhhhhhhhheeee
Q 002371 619 QIVTVLWFSFSTMFFAH--RENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILT 671 (930)
Q Consensus 619 ~~~~~~~~~~~~l~~~~--~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt 671 (930)
++.+++||++.++..-| .-.|.+..+|++.++|.++++.+.....+.+...|.
T Consensus 115 ~~~~a~yf~~~t~tTvGYGdi~P~T~~gk~~~i~~~l~Gi~~~~~~~~~i~~~l~ 169 (309)
T 3um7_A 115 DLGSAFFFSGTIITTIGYGNVALRTDAGRLFCIFYALVGIPLFGILLAGVGDRLG 169 (309)
T ss_dssp SHHHHHHHHHHHHTSCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhhhHhhheeeeecccCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47889999999998776 348999999999999999999999999998887764
No 311
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=48.75 E-value=24 Score=35.32 Aligned_cols=80 Identities=8% Similarity=-0.039 Sum_probs=57.0
Q ss_pred EEEEEEe--cCCcCcchHHHHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCC-ceEEEEEcch-hhHHHHHH
Q 002371 161 EVIAIFN--DDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMME-ARVIVVHGYS-RTGLMVFD 236 (930)
Q Consensus 161 ~vaii~~--d~~~g~~~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~-~~viv~~~~~-~~~~~~~~ 236 (930)
+|+++.. +++|.......+.+++++.|.++.....- .. .+.......++.+.+.+ +|.||+.... ......++
T Consensus 2 ~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~-~~--~~~~~~~~~i~~l~~~~~vdgii~~~~~~~~~~~~~~ 78 (276)
T 3ksm_A 2 KLLLVLKGDSNAYWRQVYLGAQKAADEAGVTLLHRSTK-DD--GDIAGQIQILSYHLSQAPPDALILAPNSAEDLTPSVA 78 (276)
T ss_dssp EEEEECSCSSSTHHHHHHHHHHHHHHHHTCEEEECCCS-ST--TCHHHHHHHHHHHHHHSCCSEEEECCSSTTTTHHHHH
T ss_pred eEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEECCC-CC--CCHHHHHHHHHHHHHhCCCCEEEEeCCCHHHHHHHHH
Confidence 5777775 46777888899999999999988753211 11 23445566778888888 9999997643 44566788
Q ss_pred HHHHcCC
Q 002371 237 VAQRLGM 243 (930)
Q Consensus 237 ~a~~~g~ 243 (930)
.+.+.|+
T Consensus 79 ~~~~~~i 85 (276)
T 3ksm_A 79 QYRARNI 85 (276)
T ss_dssp HHHHTTC
T ss_pred HHHHCCC
Confidence 8888775
No 312
>1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel protein, salt bridges, electrostatic interactions, lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1j5t_A
Probab=48.58 E-value=64 Score=32.13 Aligned_cols=86 Identities=12% Similarity=0.051 Sum_probs=60.4
Q ss_pred HHHHHHHHHcCCcEEEEEEecCCcCcchHHHHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCCceEEEEEcc
Q 002371 148 SAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY 227 (930)
Q Consensus 148 ~ai~~~l~~~~w~~vaii~~d~~~g~~~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~ 227 (930)
..+|+..... ..-+.++. |..|..+..+.+...-+..++.|..+..+- +.+ ++...+..++|+|.+.+.
T Consensus 64 ~~iA~~y~~~-A~~IsVlT-d~~~F~gs~~dL~~ir~~v~lPvLrKDfi~-------~~~--qi~ea~~~GAD~ilLi~a 132 (251)
T 1i4n_A 64 EDFIRMYDEL-ADAISILT-EKHYFKGDPAFVRAARNLTCRPILAKDFYI-------DTV--QVKLASSVGADAILIIAR 132 (251)
T ss_dssp HHHHHHHHHH-CSEEEEEC-CCSSSCCCTHHHHHHHTTCCSCEEEECCCC-------STH--HHHHHHHTTCSEEEEEGG
T ss_pred HHHHHHHHHh-CCceEEEe-cccccCCCHHHHHHHHHhCCCCEEEeeCCC-------CHH--HHHHHHHcCCCEEEEecc
Confidence 4455444444 56666665 666777777888777777788877555332 223 466788999999999765
Q ss_pred h---hhHHHHHHHHHHcCCC
Q 002371 228 S---RTGLMVFDVAQRLGMM 244 (930)
Q Consensus 228 ~---~~~~~~~~~a~~~g~~ 244 (930)
. .+...+++.++++||.
T Consensus 133 ~l~~~~l~~l~~~a~~lGl~ 152 (251)
T 1i4n_A 133 ILTAEQIKEIYEAAEELGMD 152 (251)
T ss_dssp GSCHHHHHHHHHHHHTTTCE
T ss_pred cCCHHHHHHHHHHHHHcCCe
Confidence 5 5788899999999984
No 313
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*
Probab=48.33 E-value=39 Score=35.26 Aligned_cols=82 Identities=5% Similarity=0.041 Sum_probs=54.6
Q ss_pred cEEEEEEec---CCcCcchHHHHHHHHHhcCcEEEEEE-ecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchhhHHHHH
Q 002371 160 GEVIAIFND---DDQGRNGVTALGDKLAEIRCKISYKS-ALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVF 235 (930)
Q Consensus 160 ~~vaii~~d---~~~g~~~~~~~~~~l~~~g~~i~~~~-~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~~~~~~~ 235 (930)
++|+++..+ ++|.......+.+++++.|..+.... ..... .+...-...++.+.+.++|.||+..........+
T Consensus 44 ~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~--~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~ 121 (342)
T 1jx6_A 44 IKISVVYPGQQVSDYWVRNIASFEKRLYKLNINYQLNQVFTRPN--ADIKQQSLSLMEALKSKSDYLIFTLDTTRHRKFV 121 (342)
T ss_dssp EEEEEEECCCSSCCHHHHHHHHHHHHHHHTTCCEEEEEEECCTT--CCHHHHHHHHHHHHHTTCSEEEECCSSSTTHHHH
T ss_pred eEEEEEecCCcccHHHHHHHHHHHHHHHHcCCeEEEEecCCCCc--cCHHHHHHHHHHHHhcCCCEEEEeCChHhHHHHH
Confidence 478888765 56777788899999999998765432 11200 1244455677888888999999944433334566
Q ss_pred HHHHHcCC
Q 002371 236 DVAQRLGM 243 (930)
Q Consensus 236 ~~a~~~g~ 243 (930)
+.+.+.|.
T Consensus 122 ~~~~~~~i 129 (342)
T 1jx6_A 122 EHVLDSTN 129 (342)
T ss_dssp HHHHHHCS
T ss_pred HHHHHcCC
Confidence 77777664
No 314
>3szp_A Transcriptional regulator, LYSR family; winged helix-turn helix, DNA-binding, transcription factor; 2.20A {Vibrio cholerae} PDB: 3t1b_B
Probab=48.29 E-value=9.6 Score=38.67 Aligned_cols=71 Identities=4% Similarity=-0.098 Sum_probs=42.7
Q ss_pred ceEeCCCHHHHHHHHHcCCcEEEEccchhhHHHHhcCcceEEeCC--ccccCccEEEecCCCcchhHHHHHHHhc
Q 002371 714 RLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSDHCQFSVRGQ--EFTKSGWGFAFPRDSPLAIDMSTAILTL 786 (930)
Q Consensus 714 ~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~k~spl~~~~n~~i~~l 786 (930)
.....++.+.....+..|.--+++-+.....+. .. ..+..+.. ......++++.+++.+....+...+..+
T Consensus 213 ~~~~~~~~~~~~~~v~~g~Giailp~~~~~~~~-~~-~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~l 285 (291)
T 3szp_A 213 GRFQASALNVVRSACSEGLGITLMPDVMLREFL-ED-GSLVQVLSDWSSNPRDIYMLYNHKDHQPEKVRLFIDFV 285 (291)
T ss_dssp CSEEESSHHHHHHHHHTTCCEEEEEGGGTHHHH-HT-TTSEECCTTCBCCCEEEEEEECCGGGCCHHHHHHHHHH
T ss_pred CceEECcHHHHHHHHHcCCcEEEccHHHHHHHH-hC-CCeEEecCCccCCCCcEEEEECCCCCCCHHHHHHHHHH
Confidence 345678889999999988776776554444333 32 23333322 2234567788888866655555555443
No 315
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=48.12 E-value=1e+02 Score=28.16 Aligned_cols=86 Identities=14% Similarity=0.066 Sum_probs=58.0
Q ss_pred cEEEEEEecCCcCcchHHHHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCCceEEEEEcch----hhHHHHH
Q 002371 160 GEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS----RTGLMVF 235 (930)
Q Consensus 160 ~~vaii~~d~~~g~~~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~----~~~~~~~ 235 (930)
.+|.+.....+.-.-+...+...|+..|.+|.+--. .......+..+++.+||+|.+.+.. .....++
T Consensus 19 ~~vlla~~~gd~HdiG~~~va~~l~~~G~eVi~lG~--------~~p~e~lv~aa~~~~~diV~lS~~~~~~~~~~~~~i 90 (161)
T 2yxb_A 19 YKVLVAKMGLDGHDRGAKVVARALRDAGFEVVYTGL--------RQTPEQVAMAAVQEDVDVIGVSILNGAHLHLMKRLM 90 (161)
T ss_dssp CEEEEEEESSSSCCHHHHHHHHHHHHTTCEEECCCS--------BCCHHHHHHHHHHTTCSEEEEEESSSCHHHHHHHHH
T ss_pred CEEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCC--------CCCHHHHHHHHHhcCCCEEEEEeechhhHHHHHHHH
Confidence 466666555555556678888899999999875321 1223456777777899999998653 5677778
Q ss_pred HHHHHcCCCCCceEEEEeC
Q 002371 236 DVAQRLGMMDSGYVWIATT 254 (930)
Q Consensus 236 ~~a~~~g~~~~~~~~i~~~ 254 (930)
+++++.|.. .-.+|+++.
T Consensus 91 ~~L~~~g~~-~i~v~vGG~ 108 (161)
T 2yxb_A 91 AKLRELGAD-DIPVVLGGT 108 (161)
T ss_dssp HHHHHTTCT-TSCEEEEEC
T ss_pred HHHHhcCCC-CCEEEEeCC
Confidence 888887762 234566543
No 316
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=48.07 E-value=35 Score=35.14 Aligned_cols=79 Identities=8% Similarity=-0.040 Sum_probs=54.0
Q ss_pred EEEEEEecCC-cCcchHHHHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCCceEEEEEcch-hhHHHHHHHH
Q 002371 161 EVIAIFNDDD-QGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS-RTGLMVFDVA 238 (930)
Q Consensus 161 ~vaii~~d~~-~g~~~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~-~~~~~~~~~a 238 (930)
+|+++..+.. |.......+.+++++.|.++.... +.. .+.......++++.+.++|.||+.... ......++.+
T Consensus 3 ~Ig~i~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~--~~~--~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~ 78 (313)
T 2h3h_A 3 TIGVIGKSVHPYWSQVEQGVKAAGKALGVDTKFFV--PQK--EDINAQLQMLESFIAEGVNGIAIAPSDPTAVIPTIKKA 78 (313)
T ss_dssp EEEEECSCSSHHHHHHHHHHHHHHHHHTCEEEEEC--CSS--SCHHHHHHHHHHHHHTTCSEEEECCSSTTTTHHHHHHH
T ss_pred EEEEEeCCCcHHHHHHHHHHHHHHHHcCCEEEEEC--CCC--CCHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHHHH
Confidence 5777765422 777788889999999999876542 112 224555667888888899999986543 3334567777
Q ss_pred HHcCC
Q 002371 239 QRLGM 243 (930)
Q Consensus 239 ~~~g~ 243 (930)
.+.|+
T Consensus 79 ~~~~i 83 (313)
T 2h3h_A 79 LEMGI 83 (313)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 77775
No 317
>3lmz_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS isomerase; HET: MSE CIT PGE; 1.44A {Parabacteroides distasonis}
Probab=47.83 E-value=77 Score=31.38 Aligned_cols=94 Identities=9% Similarity=-0.022 Sum_probs=68.1
Q ss_pred HHHHHHHHHHcCCcEEEEEEec--CCcCcchHHHHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCCceEEEE
Q 002371 147 MSAIAEMVSYFGWGEVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVV 224 (930)
Q Consensus 147 ~~ai~~~l~~~~w~~vaii~~d--~~~g~~~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~ 224 (930)
....++.++..|.+.|=+.... .+......+.+++.+++.|+++........ .....+...+...+..+++.|++
T Consensus 32 ~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~~~~~~---~~~~~~~~~i~~A~~lGa~~v~~ 108 (257)
T 3lmz_A 32 LDTTLKTLERLDIHYLCIKDFHLPLNSTDEQIRAFHDKCAAHKVTGYAVGPIYM---KSEEEIDRAFDYAKRVGVKLIVG 108 (257)
T ss_dssp HHHHHHHHHHTTCCEEEECTTTSCTTCCHHHHHHHHHHHHHTTCEEEEEEEEEE---CSHHHHHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHHhCCCEEEEecccCCCCCCHHHHHHHHHHHHHcCCeEEEEecccc---CCHHHHHHHHHHHHHhCCCEEEe
Confidence 3567777888999988776431 122344568999999999999875443321 23677888888888889999888
Q ss_pred EcchhhHHHHHHHHHHcCC
Q 002371 225 HGYSRTGLMVFDVAQRLGM 243 (930)
Q Consensus 225 ~~~~~~~~~~~~~a~~~g~ 243 (930)
+...+....+...|++.|+
T Consensus 109 ~p~~~~l~~l~~~a~~~gv 127 (257)
T 3lmz_A 109 VPNYELLPYVDKKVKEYDF 127 (257)
T ss_dssp EECGGGHHHHHHHHHHHTC
T ss_pred cCCHHHHHHHHHHHHHcCC
Confidence 7666777777888888775
No 318
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=47.34 E-value=45 Score=33.75 Aligned_cols=79 Identities=15% Similarity=-0.038 Sum_probs=55.4
Q ss_pred CcEEEEEEec--CCcCcchHHHHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchhhHHHHHH
Q 002371 159 WGEVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFD 236 (930)
Q Consensus 159 w~~vaii~~d--~~~g~~~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~~~~~~~~ 236 (930)
-+.|+++..+ ++|.......+.+++++.|..+.... .. .+.......++.+.+.++|.||+...... ...++
T Consensus 16 s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~---~~--~~~~~~~~~~~~l~~~~vdgiIi~~~~~~-~~~~~ 89 (289)
T 2fep_A 16 TTTVGVIIPDISSIFYSELARGIEDIATMYKYNIILSN---SD--QNMEKELHLLNTMLGKQVDGIVFMGGNIT-DEHVA 89 (289)
T ss_dssp CCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEE---CT--TCHHHHHHHHHHHHHTTCSEEEECCSCCC-HHHHH
T ss_pred CCeEEEEeCCCCCchHHHHHHHHHHHHHHcCCEEEEEe---CC--CCHHHHHHHHHHHHhCCCCEEEEecCCCC-HHHHH
Confidence 3588898864 66777888999999999999876532 12 22445566788888889999998764322 33566
Q ss_pred HHHHcCC
Q 002371 237 VAQRLGM 243 (930)
Q Consensus 237 ~a~~~g~ 243 (930)
.+.+.|.
T Consensus 90 ~l~~~~i 96 (289)
T 2fep_A 90 EFKRSPV 96 (289)
T ss_dssp HHHHSSS
T ss_pred HHHhcCC
Confidence 6666664
No 319
>1oj7_A Hypothetical oxidoreductase YQHD; structural genomics; HET: NZQ; 2.0A {Escherichia coli} SCOP: e.22.1.2
Probab=47.22 E-value=47 Score=35.94 Aligned_cols=83 Identities=13% Similarity=0.186 Sum_probs=55.4
Q ss_pred HHHHHHHcCCcEEEEEEecCCcCc-chHHHHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCCceEEEEEcch
Q 002371 150 IAEMVSYFGWGEVIAIFNDDDQGR-NGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS 228 (930)
Q Consensus 150 i~~~l~~~~w~~vaii~~d~~~g~-~~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~ 228 (930)
+.++++ +| +++.+|+.+..... +..+.+.+.|+ |+++..-....+. .+.+.+...++.+++.++|+||-.+.+
T Consensus 43 l~~~l~-~g-~r~liVtd~~~~~~~g~~~~v~~~L~--g~~~~~f~~v~~~--p~~~~v~~~~~~~~~~~~D~IIavGGG 116 (408)
T 1oj7_A 43 LREQIP-HD-ARVLITYGGGSVKKTGVLDQVLDALK--GMDVLEFGGIEPN--PAYETLMNAVKLVREQKVTFLLAVGGG 116 (408)
T ss_dssp HHHHSC-TT-CEEEEEECSSHHHHHSHHHHHHHHTT--TSEEEEECCCCSS--CBHHHHHHHHHHHHHHTCCEEEEEESH
T ss_pred HHHHHh-cC-CEEEEEECCchhhhccHHHHHHHHhC--CCEEEEeCCcCCC--cCHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 455555 67 89999985543333 35677777776 7765433233333 457778888899999999999976554
Q ss_pred --hhHHHHHHHH
Q 002371 229 --RTGLMVFDVA 238 (930)
Q Consensus 229 --~~~~~~~~~a 238 (930)
-|..+++...
T Consensus 117 sviD~AK~iA~~ 128 (408)
T 1oj7_A 117 SVLDGTKFIAAA 128 (408)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 5666666554
No 320
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=46.90 E-value=49 Score=33.69 Aligned_cols=79 Identities=6% Similarity=0.035 Sum_probs=55.8
Q ss_pred cEEEEEEe--cCCcCcchHHHHHHHHHhcCc-EEEEEEecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchh-hHHHHH
Q 002371 160 GEVIAIFN--DDDQGRNGVTALGDKLAEIRC-KISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSR-TGLMVF 235 (930)
Q Consensus 160 ~~vaii~~--d~~~g~~~~~~~~~~l~~~g~-~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~-~~~~~~ 235 (930)
++|+++.. +++|.......+.+++++.|. ++..... . .+.......++.+.+.++|.||+..... .....+
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~---~--~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~~~~~ 77 (309)
T 2fvy_A 3 TRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDS---Q--NDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVI 77 (309)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHHHHTCTTEEEEEEEC---T--TCHHHHHHHHHHHHHTTCSEEEECCSSGGGHHHHH
T ss_pred cEEEEEeccCCcHHHHHHHHHHHHHHHhcCCeEEEEecC---C--CCHHHHHHHHHHHHHcCCCEEEEeCCCcchhHHHH
Confidence 46888875 466777888999999999997 7765321 1 1244556677888888999999876443 345677
Q ss_pred HHHHHcCC
Q 002371 236 DVAQRLGM 243 (930)
Q Consensus 236 ~~a~~~g~ 243 (930)
+++.+.|+
T Consensus 78 ~~~~~~~i 85 (309)
T 2fvy_A 78 EKARGQNV 85 (309)
T ss_dssp HHHHTTTC
T ss_pred HHHHHCCC
Confidence 77877665
No 321
>3cg1_A UPF0100 protein PF0080; ABC transporter, binding protein, molybdate, tungstate, ligand, unknown function, transport protein; 1.60A {Pyrococcus furiosus} PDB: 3cg3_A
Probab=46.58 E-value=1.9e+02 Score=29.18 Aligned_cols=71 Identities=13% Similarity=0.052 Sum_probs=42.9
Q ss_pred HHHHHHH---HH-CCCcccEEEEeCCCCCCCCCHHHHHHHHHc-C-cccEEEecEEEecC---ccceeeecccccccceE
Q 002371 493 DVFLAAV---RL-LPYAVPYKFIPYGDGHKNPTYSELINQITT-G-VFDAAVGDIAIVTN---RTKAVDFTQPYIESGLV 563 (930)
Q Consensus 493 dll~~l~---~~-ln~~~~~~~~~~~~~~~n~~~~~l~~~l~~-g-~~D~~~~~~~~t~~---R~~~vdfs~p~~~~~~~ 563 (930)
++++.+. ++ .|.++++.... ++-..++.+|.. | .+|+.+.+-....+ .....+...||....++
T Consensus 21 ~~~~~F~~~~~~~~gi~V~~~~~~-------~~s~~l~~~i~~~g~~~Dv~~~~~~~~~~~l~~~g~~~~~~~~~~~~~v 93 (296)
T 3cg1_A 21 EVEKEFSEYAERNLGIKVSFQDEA-------SGSVMAVRKVTDLGRKADVIGVADYTLIPQLLIPNYTDFYVLFATNEIV 93 (296)
T ss_dssp HHHHHHHHHHHHHHSCCEEEEEEE-------ECHHHHHHHHHTSCCCCSEEEESSTTHHHHHTTTTTCSCCEEEEECCEE
T ss_pred HHHHHHHHHHHhCCCceEEEEeec-------CCHHHHHHHHHhCCCCCCEEEECChhHHHHHhcCCCCCcceecccccEE
Confidence 5777777 66 68776651122 345678888887 5 59998763211111 11122456778888888
Q ss_pred EEEeccC
Q 002371 564 VVAPVRK 570 (930)
Q Consensus 564 ~~v~~~~ 570 (930)
+++++..
T Consensus 94 i~~~~~~ 100 (296)
T 3cg1_A 94 IAFTDKS 100 (296)
T ss_dssp EEECTTS
T ss_pred EEEcCCC
Confidence 8887654
No 322
>1p99_A Hypothetical protein PG110; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.70A {Staphylococcus aureus subsp} SCOP: c.94.1.1
Probab=46.58 E-value=71 Score=32.69 Aligned_cols=36 Identities=11% Similarity=0.122 Sum_probs=25.4
Q ss_pred HHHHHHHCCCcccEEEEeCCCCCCCCCHHHHHHHHHcCcccEEE
Q 002371 495 FLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAV 538 (930)
Q Consensus 495 l~~l~~~ln~~~~~~~~~~~~~~~n~~~~~l~~~l~~g~~D~~~ 538 (930)
++...++.|+++ +++.+ .++.....+|.+|++|+..
T Consensus 56 ~~~~~~~~G~~V--e~~~f------~~~~~~~~AL~~G~iD~~~ 91 (295)
T 1p99_A 56 VKELAKKDDIDV--EIKHF------SDYNLPNKALNDGDIDMNA 91 (295)
T ss_dssp HHHHHGGGTCCE--EEEEC------SSTTSHHHHHHTTSSSEEE
T ss_pred HHHHHHHcCCeE--EEEEe------CChHHHHHHHHcCCCCEEc
Confidence 334555568665 55554 4477889999999999975
No 323
>1ta9_A Glycerol dehydrogenase; oxidoredu; 1.90A {Schizosaccharomyces pombe}
Probab=46.36 E-value=31 Score=37.96 Aligned_cols=97 Identities=8% Similarity=0.017 Sum_probs=64.9
Q ss_pred HHHHHHHHcCCcEEEEEEecCCcCcchHHHHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCCceEEEEEcch
Q 002371 149 AIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS 228 (930)
Q Consensus 149 ai~~~l~~~~w~~vaii~~d~~~g~~~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~ 228 (930)
.+.++++.+|.+++.||+....+. ...+.+.+.|++.|+++.+ ..+... ...+.+...++.+++ ++|+||-.+.+
T Consensus 81 ~l~~~l~~~g~~rvlIVtd~~~~~-~~~~~v~~~L~~~gi~~~~-~~~~ge--~~~~~v~~~~~~~~~-~~D~IIAvGGG 155 (450)
T 1ta9_A 81 RSYMYVKKWATKSAVVLADQNVWN-ICANKIVDSLSQNGMTVTK-LVFGGE--ASLVELDKLRKQCPD-DTQVIIGVGGG 155 (450)
T ss_dssp GHHHHHTTTCSSEEEEEEEHHHHH-HTHHHHHHHHHHTTCEEEE-EEECSC--CCHHHHHHHHTTSCT-TCCEEEEEESH
T ss_pred HHHHHHHhcCCCEEEEEECccHHH-HHHHHHHHHHHHCCCeEEE-EeeCCC--CCHHHHHHHHHHHhh-CCCEEEEeCCc
Confidence 355667777866999998655433 4678889999999988753 234433 345677777777777 99999976554
Q ss_pred --hhHHHHHHHHHHcCCCCCceEEEEeCc
Q 002371 229 --RTGLMVFDVAQRLGMMDSGYVWIATTW 255 (930)
Q Consensus 229 --~~~~~~~~~a~~~g~~~~~~~~i~~~~ 255 (930)
-|...++... .| ..++-|-|..
T Consensus 156 SviD~AK~iA~~--~g---iP~I~IPTTA 179 (450)
T 1ta9_A 156 KTMDSAKYIAHS--MN---LPSIICPTTA 179 (450)
T ss_dssp HHHHHHHHHHHH--TT---CCEEEEESSC
T ss_pred HHHHHHHHHHHh--cC---CCEEEEeCCC
Confidence 5666666532 23 3566666653
No 324
>3isp_A HTH-type transcriptional regulator RV1985C/MT2039; ROD shaped structure, DNA binding domain, regulatory domain, DNA-binding; 2.70A {Mycobacterium tuberculosis}
Probab=46.19 E-value=63 Score=32.72 Aligned_cols=47 Identities=19% Similarity=0.085 Sum_probs=32.1
Q ss_pred CCHHHHHHHHHcCcccEEEecEEEecCccceeeecccccccceEEEEeccC
Q 002371 520 PTYSELINQITTGVFDAAVGDIAIVTNRTKAVDFTQPYIESGLVVVAPVRK 570 (930)
Q Consensus 520 ~~~~~l~~~l~~g~~D~~~~~~~~t~~R~~~vdfs~p~~~~~~~~~v~~~~ 570 (930)
++..+++..+.+|++|+++.... .....+. ..++.+..++++++...
T Consensus 127 ~~~~~~~~~l~~g~~D~~i~~~~---~~~~~l~-~~~l~~~~~~~v~~~~~ 173 (303)
T 3isp_A 127 EDQDHSARLLREGVAMGAVTTER---NPVPGCR-VHPLGEMRYLPVASRPF 173 (303)
T ss_dssp CCHHHHHHHHHTTSCSEEEESCC---SCCTTEE-EEEEEEEEEEEEECHHH
T ss_pred cChHHHHHHHHcCcceEEEecCC---CCCCCeE-EEEccceeEEEEecchH
Confidence 56788999999999999886322 1112222 46677788888887654
No 325
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=46.11 E-value=48 Score=34.45 Aligned_cols=84 Identities=11% Similarity=-0.050 Sum_probs=55.1
Q ss_pred HHHcCCcEEEEEEec--CCcCcchHHHHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchhhH
Q 002371 154 VSYFGWGEVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTG 231 (930)
Q Consensus 154 l~~~~w~~vaii~~d--~~~g~~~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~~~ 231 (930)
++...-+.|+++..+ ++|.......+.+++++.|..+..... . .+.......++.+...+.|.||+......
T Consensus 58 l~~~~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~---~--~~~~~~~~~~~~l~~~~vdgiI~~~~~~~- 131 (332)
T 2o20_A 58 LASKRTTTVGVILPTITSTYFAAITRGVDDIASMYKYNMILANS---D--NDVEKEEKVLETFLSKQVDGIVYMGSSLD- 131 (332)
T ss_dssp ----CCCEEEEEESCTTCHHHHHHHHHHHHHHHHTTCEEEEEEC---T--TCHHHHHHHHHHHHHTTCSEEEECSSCCC-
T ss_pred HhcCCCCEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCEEEEEEC---C--CChHHHHHHHHHHHhCCCCEEEEeCCCCC-
Confidence 333445689999864 667778889999999999998875421 1 12445556788888889999998764322
Q ss_pred HHHHHHHHHcCC
Q 002371 232 LMVFDVAQRLGM 243 (930)
Q Consensus 232 ~~~~~~a~~~g~ 243 (930)
...++.+.+.|+
T Consensus 132 ~~~~~~l~~~~i 143 (332)
T 2o20_A 132 EKIRTSLKNSRT 143 (332)
T ss_dssp HHHHHHHHHHCC
T ss_pred HHHHHHHHhCCC
Confidence 234555656664
No 326
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0
Probab=46.04 E-value=1.3e+02 Score=30.32 Aligned_cols=87 Identities=16% Similarity=0.017 Sum_probs=62.2
Q ss_pred HHHHHHHHHcCCcEEEEEEecCCcCcchHHHHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCCceEEEEEcc
Q 002371 148 SAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY 227 (930)
Q Consensus 148 ~ai~~~l~~~~w~~vaii~~d~~~g~~~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~ 227 (930)
..+|+.....|...+.++.... |-.+..+.+...-+..++.|..+..+-. .+ ++.+.+..++|.|++...
T Consensus 82 ~~~A~~y~~~GA~~IsVltd~~-~f~Gs~~~L~~ir~~v~lPVl~Kdfi~d-------~~--qi~ea~~~GAD~VlLi~a 151 (272)
T 3tsm_A 82 PALAKAYEEGGAACLSVLTDTP-SFQGAPEFLTAARQACSLPALRKDFLFD-------PY--QVYEARSWGADCILIIMA 151 (272)
T ss_dssp HHHHHHHHHTTCSEEEEECCST-TTCCCHHHHHHHHHTSSSCEEEESCCCS-------TH--HHHHHHHTTCSEEEEETT
T ss_pred HHHHHHHHHCCCCEEEEecccc-ccCCCHHHHHHHHHhcCCCEEECCccCC-------HH--HHHHHHHcCCCEEEEccc
Confidence 5567777788999999887444 4446777777766667887765443321 11 577788899999999753
Q ss_pred ---hhhHHHHHHHHHHcCCC
Q 002371 228 ---SRTGLMVFDVAQRLGMM 244 (930)
Q Consensus 228 ---~~~~~~~~~~a~~~g~~ 244 (930)
..+...++..++++||.
T Consensus 152 ~L~~~~l~~l~~~a~~lGl~ 171 (272)
T 3tsm_A 152 SVDDDLAKELEDTAFALGMD 171 (272)
T ss_dssp TSCHHHHHHHHHHHHHTTCE
T ss_pred ccCHHHHHHHHHHHHHcCCe
Confidence 35678899999999974
No 327
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=45.91 E-value=53 Score=30.67 Aligned_cols=63 Identities=19% Similarity=0.133 Sum_probs=45.4
Q ss_pred EEEEEEecCC-----c--C---cchHHHHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhc-CCceEEEEEcc
Q 002371 161 EVIAIFNDDD-----Q--G---RNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRM-MEARVIVVHGY 227 (930)
Q Consensus 161 ~vaii~~d~~-----~--g---~~~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~-~~~~viv~~~~ 227 (930)
+++||...|. . | ......+.+.|++.|+++.....++.+ .+.+...+.+..+ .++|+|+..+.
T Consensus 17 ~v~iitvsd~~~~~~~~~g~i~D~ng~~L~~~L~~~G~~v~~~~iV~Dd----~~~i~~al~~~~a~~~~DlVittGG 90 (178)
T 3iwt_A 17 NFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIENGHKIIGYSLVPDD----KIKILKAFTDALSIDEVDVIISTGG 90 (178)
T ss_dssp EEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHTTCEEEEEEEECSC----HHHHHHHHHHHHTCTTCCEEEEESC
T ss_pred EEEEEEEcCCCccccccCCCCCcchHHHHHHHHHHCCCEEEEEEEeCCC----HHHHHHHHHHHHhcCCCCEEEecCC
Confidence 7888875431 0 1 123467899999999999988888765 7778777776654 56899998753
No 328
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=45.70 E-value=90 Score=26.35 Aligned_cols=70 Identities=10% Similarity=0.100 Sum_probs=45.8
Q ss_pred chHHHHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCCceEEEEEc--chhhHHHHHHHHHHcCCCCCceEEE
Q 002371 174 NGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHG--YSRTGLMVFDVAQRLGMMDSGYVWI 251 (930)
Q Consensus 174 ~~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~--~~~~~~~~~~~a~~~g~~~~~~~~i 251 (930)
.....+.+.+++.|..+... . +....+..++...+|+|++.. ...++..++++.++..-...-.+.+
T Consensus 14 ~~~~~l~~~L~~~g~~v~~~---~--------~~~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~ 82 (127)
T 3i42_A 14 AAAETFKELLEMLGFQADYV---M--------SGTDALHAMSTRGYDAVFIDLNLPDTSGLALVKQLRALPMEKTSKFVA 82 (127)
T ss_dssp HHHHHHHHHHHHTTEEEEEE---S--------SHHHHHHHHHHSCCSEEEEESBCSSSBHHHHHHHHHHSCCSSCCEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEE---C--------CHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhhhccCCCCEEE
Confidence 46778888888888765431 1 233456666778899999964 4467888999999863222233444
Q ss_pred EeC
Q 002371 252 ATT 254 (930)
Q Consensus 252 ~~~ 254 (930)
.++
T Consensus 83 ~s~ 85 (127)
T 3i42_A 83 VSG 85 (127)
T ss_dssp EEC
T ss_pred EEC
Confidence 444
No 329
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=45.59 E-value=24 Score=35.98 Aligned_cols=88 Identities=6% Similarity=-0.076 Sum_probs=55.8
Q ss_pred HHHHHHcCCcEEEEEEec--CCcCcchHHHHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCCceEEEEEcch
Q 002371 151 AEMVSYFGWGEVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS 228 (930)
Q Consensus 151 ~~~l~~~~w~~vaii~~d--~~~g~~~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~ 228 (930)
++-++.-.-++|+++..+ ++|.......+.+++++.|.++..... . .+.......++.+.+.++|.||+....
T Consensus 12 Ar~L~~~~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~---~--~~~~~~~~~~~~l~~~~vdgii~~~~~ 86 (293)
T 2iks_A 12 AAGLRAGRTRSIGLVIPDLENTSYTRIANYLERQARQRGYQLLIACS---E--DQPDNEMRCIEHLLQRQVDAIIVSTSL 86 (293)
T ss_dssp ------CCCCEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEEEC---T--TCHHHHHHHHHHHHHTTCSEEEECCSS
T ss_pred HHHhhcCCCcEEEEEeCCCcCcHHHHHHHHHHHHHHHCCCEEEEEcC---C--CCHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 333444455789999864 667777888999999999998875321 1 124455667888888899999987654
Q ss_pred hhHHHHHHHHHHcCC
Q 002371 229 RTGLMVFDVAQRLGM 243 (930)
Q Consensus 229 ~~~~~~~~~a~~~g~ 243 (930)
.....+++.+.+.|+
T Consensus 87 ~~~~~~~~~~~~~~i 101 (293)
T 2iks_A 87 PPEHPFYQRWANDPF 101 (293)
T ss_dssp CTTCHHHHTTTTSSS
T ss_pred CCcHHHHHHHHhCCC
Confidence 322335555555554
No 330
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=45.47 E-value=35 Score=35.92 Aligned_cols=79 Identities=11% Similarity=0.029 Sum_probs=53.6
Q ss_pred CcEEEEEEec--CCcCcchHHHHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchhhHHHHHH
Q 002371 159 WGEVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFD 236 (930)
Q Consensus 159 w~~vaii~~d--~~~g~~~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~~~~~~~~ 236 (930)
-+.|+++..+ ++|.......+.+++++.|..+..... . .+.......++.+...+.|.||+...... ...++
T Consensus 66 s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~--~~~~~~~~~~~~l~~~~vdgiI~~~~~~~-~~~~~ 139 (348)
T 3bil_A 66 SNTIGVIVPSLINHYFAAMVTEIQSTASKAGLATIITNS---N--EDATTMSGSLEFLTSHGVDGIICVPNEEC-ANQLE 139 (348)
T ss_dssp --CEEEEESCSSSHHHHHHHHHHHHHHHHTTCCEEEEEC---T--TCHHHHHHHHHHHHHTTCSCEEECCCGGG-HHHHH
T ss_pred CCEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCEEEEEeC---C--CCHHHHHHHHHHHHhCCCCEEEEeCCCCC-hHHHH
Confidence 3578888854 667777888999999999998775421 1 12445566788888889999988765433 24566
Q ss_pred HHHHcCC
Q 002371 237 VAQRLGM 243 (930)
Q Consensus 237 ~a~~~g~ 243 (930)
.+.+.|+
T Consensus 140 ~l~~~~i 146 (348)
T 3bil_A 140 DLQKQGM 146 (348)
T ss_dssp HHHHC-C
T ss_pred HHHhCCC
Confidence 6766664
No 331
>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3
Probab=45.28 E-value=57 Score=32.80 Aligned_cols=83 Identities=11% Similarity=-0.008 Sum_probs=59.4
Q ss_pred CeEEEE--eCchhHHHHHHhcCCCccceEeCCCHHHHHHHHHcCCcEEEEccch---------hhHHHHhcCcceEEeCC
Q 002371 690 DRVGYQ--VGSFAENYLIEELSIPKSRLVALGSPEEYAIALENRTVAAVVDERP---------YIDLFLSDHCQFSVRGQ 758 (930)
Q Consensus 690 ~~i~~~--~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~---------~~~~~~~~~~~l~~~~~ 758 (930)
.+|+++ .|+|.+.-..+.++.....++++.+.+++++++.+|++|..+.... ..+.+.+ .+++++++
T Consensus 4 ~~iaylGp~Gtfs~~Aa~~~f~~~~~~~~~~~s~~~v~~aV~~g~~d~gVvPiENS~~G~V~~t~DlL~~--~~l~I~gE 81 (267)
T 2qmw_A 4 MQLYYLGPKGTFSYLACRQYFSENEATFQPKSNLFEVIKAVADDDTSIGVVPIENSIEGTINIVADALAQ--QDVFAHGE 81 (267)
T ss_dssp CEEEEECSTTSHHHHHHHHHCCTTSSEEEEESSHHHHHHHHHHCSSEEEEEEEESCSSSCSHHHHHHHHT--TSSEEEEE
T ss_pred cEEEEECCCCcHHHHHHHHhhccCCceEEEcCCHHHHHHHHHcCCCCEEEEEehhcCCCChHHHHHHhhc--CCcEEEEE
Confidence 468886 6888777665544322234889999999999999999988776432 2333333 36999999
Q ss_pred ccccCccEEEecCCCc
Q 002371 759 EFTKSGWGFAFPRDSP 774 (930)
Q Consensus 759 ~~~~~~~~~~~~k~sp 774 (930)
.+.+...++...+|..
T Consensus 82 ~~l~I~h~Ll~~~g~~ 97 (267)
T 2qmw_A 82 IRLDINFALYGNGTDS 97 (267)
T ss_dssp EEEECCEEEECCSSCC
T ss_pred EEEEeeeEEEecCCCC
Confidence 8888888888877743
No 332
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Probab=45.19 E-value=36 Score=35.62 Aligned_cols=60 Identities=15% Similarity=0.114 Sum_probs=51.0
Q ss_pred cccchhhHHHHHHHhhccccC--C--cccchhHHHHHHHHHHHHHhhhhhhhhhheeeeecccc
Q 002371 617 RKQIVTVLWFSFSTMFFAHRE--N--TVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQLS 676 (930)
Q Consensus 617 ~~~~~~~~~~~~~~l~~~~~~--~--~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~ 676 (930)
...+..+|||++.++...|.. . +.++.++++..+-.+.++++.+.-++-+.+-+..|..+
T Consensus 92 ~~sf~~af~fSv~T~TTvGYGd~~p~~~~~~~~~l~~~~~l~G~~l~a~~~giv~ak~srp~~r 155 (343)
T 3spc_A 92 VNGFVAAFLFSIETQTTIGYGFRCVTEECPLAVFMVVVQSIVGCIIDSFMIGAIMAKMARPKKR 155 (343)
T ss_dssp CCSHHHHHHHHHHHHSCCCCSSSEECSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCC
T ss_pred cCCHHHHhheeeeeeEeecCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhh
Confidence 346889999999999877644 2 45889999999999999999999999999999887754
No 333
>4ef1_A Pheromone COB1/lipoprotein, YAEC family; periplasmic methionine binding protein, NLPA lipoprotein, ST genomics; 1.90A {Enterococcus faecalis} PDB: 4ef2_A*
Probab=44.84 E-value=2.1e+02 Score=28.27 Aligned_cols=65 Identities=12% Similarity=0.140 Sum_probs=41.6
Q ss_pred CCCCChHHhhhCCCeEEEEeCchhHHH---HHHhcCC---------------------Cccce-EeCCCHHHHHHHHHcC
Q 002371 677 SPIKGIDTLMTSNDRVGYQVGSFAENY---LIEELSI---------------------PKSRL-VALGSPEEYAIALENR 731 (930)
Q Consensus 677 ~~i~sl~dL~~s~~~i~~~~~s~~~~~---l~~~~~~---------------------~~~~~-~~~~~~~~~~~~l~~g 731 (930)
..+++++||. .|.+|++..+...+.- +.+..+. ..-++ +.. ...+....+.+|
T Consensus 91 ~kiksl~dL~-~Ga~IAIpnd~sn~~RaL~lL~~~GLI~Lk~~~~~~~~t~~DI~~Npk~l~~~~el-~aaql~~al~dg 168 (246)
T 4ef1_A 91 KKYKSLQEIP-DGSTIYVSSSVSDWPRVLTILEDAGLITLKEGVDRTTATFDDIDKNTKKLKFNHES-DPAIMTTLYDNE 168 (246)
T ss_dssp SSCSSGGGSC-TTCEEEEESCGGGHHHHHHHHHHTTSEEECTTCCGGGCCGGGEEEETTCCEEEEEE-CGGGHHHHHHTT
T ss_pred CCCCCHHHcC-CCCEEEeecCCchHHHHHHHHHHCCCeeecCCCCcCcCCHhHHhcCCCccEEeeec-CHHHHHHHhccc
Confidence 5799999996 4789999987754331 1122221 01133 333 556778888989
Q ss_pred CcEEEEccchhh
Q 002371 732 TVAAVVDERPYI 743 (930)
Q Consensus 732 ~~~a~~~~~~~~ 743 (930)
++|+.+....++
T Consensus 169 ~vDaavin~n~a 180 (246)
T 4ef1_A 169 EGAAVLINSNFA 180 (246)
T ss_dssp CSSEEEECHHHH
T ss_pred cccEEEEechHH
Confidence 999988765543
No 334
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=44.68 E-value=49 Score=33.34 Aligned_cols=79 Identities=8% Similarity=0.052 Sum_probs=54.5
Q ss_pred cEEEEEEec--CCcCcchHHHHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCCceEEEEEcch-hhHHHHHH
Q 002371 160 GEVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS-RTGLMVFD 236 (930)
Q Consensus 160 ~~vaii~~d--~~~g~~~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~-~~~~~~~~ 236 (930)
+.|+++..+ ++|.......+.+++++.|..+..... . .+...-...++.+.+.++|.||+.... ......++
T Consensus 2 ~~Igvi~~~~~~~f~~~~~~gi~~~~~~~g~~~~~~~~---~--~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~ 76 (283)
T 2ioy_A 2 KTIGLVISTLNNPFFVTLKNGAEEKAKELGYKIIVEDS---Q--NDSSKELSNVEDLIQQKVDVLLINPVDSDAVVTAIK 76 (283)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHHTCEEEEEEC---T--TCHHHHHHHHHHHHHTTCSEEEECCSSTTTTHHHHH
T ss_pred eEEEEEecCCCCHHHHHHHHHHHHHHHhcCcEEEEecC---C--CCHHHHHHHHHHHHHcCCCEEEEeCCchhhhHHHHH
Confidence 467888753 667778888999999999998775421 1 123444566778888899999886543 33345677
Q ss_pred HHHHcCC
Q 002371 237 VAQRLGM 243 (930)
Q Consensus 237 ~a~~~g~ 243 (930)
.+.+.|+
T Consensus 77 ~~~~~~i 83 (283)
T 2ioy_A 77 EANSKNI 83 (283)
T ss_dssp HHHHTTC
T ss_pred HHHHCCC
Confidence 7777775
No 335
>3dnf_A ISPH, LYTB, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; trilobal strucure, open alpha/beta, iron, iron-sulfur, isopr biosynthesis; 1.65A {Aquifex aeolicus}
Probab=44.64 E-value=36 Score=34.66 Aligned_cols=53 Identities=13% Similarity=0.168 Sum_probs=42.9
Q ss_pred EEEEecCCCChHHHHHHHH-HHHhc-CcEEEEccCChhhHHHHHHhhhcCCCcEE
Q 002371 67 SITMHDAKFNGFLSIMGAL-QFMET-DTLAIVGPQSAVMAHVLSHLANELQVPLL 119 (930)
Q Consensus 67 ~l~~~D~~~~~~~a~~~a~-~li~~-~v~aiiGp~~S~~~~av~~~~~~~~vp~i 119 (930)
++...||=|++..-.+.+. +|..+ .+..|||+..|+.+.-+.+++.+.+.|-.
T Consensus 185 ~~~~~~tIC~AT~~RQ~av~~la~~~D~miVVGg~nSSNT~rL~eia~~~~~~ty 239 (297)
T 3dnf_A 185 EVKVINTICNATSLRQESVKKLAPEVDVMIIIGGKNSGNTRRLYYISKELNPNTY 239 (297)
T ss_dssp EEEEECCCCSHHHHHHHHHHHHGGGSSEEEEESCTTCHHHHHHHHHHHHHCSSEE
T ss_pred CCCCCCCccHHHHHHHHHHHHHHhhCCEEEEECCCCCchhHHHHHHHHhcCCCEE
Confidence 3457899998888776554 55555 89999999999999999999999988743
No 336
>2qsx_A Putative transcriptional regulator, LYSR family; the putative transcriptional regulator, PSI-2, structure initiative, MCSG; 1.64A {Vibrio parahaemolyticus}
Probab=44.05 E-value=95 Score=29.50 Aligned_cols=69 Identities=10% Similarity=-0.055 Sum_probs=40.1
Q ss_pred EeCCCHHHHHHHHHcCCcEEEEccchhhHHHHhcCcceEEeC-C-ccccCccEEEecCCCcchhHHHHHHHhc
Q 002371 716 VALGSPEEYAIALENRTVAAVVDERPYIDLFLSDHCQFSVRG-Q-EFTKSGWGFAFPRDSPLAIDMSTAILTL 786 (930)
Q Consensus 716 ~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~~~l~~~~-~-~~~~~~~~~~~~k~spl~~~~n~~i~~l 786 (930)
..+++.+...+++..|---+++.... +...+.. ..+..+. + ......+.++.+++.+....+...+..+
T Consensus 140 ~~~~~~~~~~~~v~~G~Gia~lp~~~-~~~~l~~-g~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~l 210 (218)
T 2qsx_A 140 VGFEHFYLACEAVRMEKGLALLPDFM-AQFSILR-GDIQHIGNLKLHSGYGYYVVIPNFRLTSRKVALFHDWL 210 (218)
T ss_dssp BCCSSHHHHHHHHHTTCCBEEEEHHH-HHHHHHT-TSEEEEEEEEEEEEEEEEEECCTTCTTCHHHHHHHHHH
T ss_pred ceeccHHHHHHHHHhCCCEEEecHHH-HHHHHHC-CCccccCccccCCCceEEEEeccccCCCHHHHHHHHHH
Confidence 45778889999999876656665433 3322222 2343322 1 1223457788888877666666555444
No 337
>3okf_A 3-dehydroquinate synthase; structural genomics, center for structural genomics of infec diseases, csgid, NAD, lyase; HET: NAD; 2.50A {Vibrio cholerae o1 biovar eltor}
Probab=43.76 E-value=59 Score=34.81 Aligned_cols=97 Identities=16% Similarity=0.127 Sum_probs=63.1
Q ss_pred HHHHcCCcEEEEEEecCCcCcchHHHHHHHHHhcCcEEEEEEecCCCC-CCChhHHHHHHHHHhcCCc---eEEEEEcch
Q 002371 153 MVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQ-SVTETDVRNELVKVRMMEA---RVIVVHGYS 228 (930)
Q Consensus 153 ~l~~~~w~~vaii~~d~~~g~~~~~~~~~~l~~~g~~i~~~~~~~~~~-~~~~~d~~~~l~~l~~~~~---~viv~~~~~ 228 (930)
+++..+.+++.+|+....+.. ..+.+.+.|++.|+++... .++.+. ..+.+.+...++.+++.++ |+||..+.+
T Consensus 56 ~l~~~~~~rvlIVtd~~v~~~-~~~~v~~~L~~~g~~~~~~-~~~~gE~~kt~~~v~~~~~~l~~~~~~R~d~IIAvGGG 133 (390)
T 3okf_A 56 LLSLSAKQKVVIVTNHTVAPL-YAPAIISLLDHIGCQHALL-ELPDGEQYKTLETFNTVMSFLLEHNYSRDVVVIALGGG 133 (390)
T ss_dssp GGCCCTTCEEEEEEETTTHHH-HHHHHHHHHHHHTCEEEEE-EECSSGGGCBHHHHHHHHHHHHHTTCCTTCEEEEEESH
T ss_pred HHHhcCCCEEEEEECCcHHHH-HHHHHHHHHHHcCCeEEEE-EECCCcCCchHHHHHHHHHHHHhcCCCcCcEEEEECCc
Confidence 344457799999987665543 7788899999999876532 233321 1246678888888888777 688776555
Q ss_pred --hhHHHHHHHHHHcCCCCCceEEEEeC
Q 002371 229 --RTGLMVFDVAQRLGMMDSGYVWIATT 254 (930)
Q Consensus 229 --~~~~~~~~~a~~~g~~~~~~~~i~~~ 254 (930)
-|...++......| ..++-|-|.
T Consensus 134 sv~D~ak~~Aa~~~rg---ip~I~IPTT 158 (390)
T 3okf_A 134 VIGDLVGFAAACYQRG---VDFIQIPTT 158 (390)
T ss_dssp HHHHHHHHHHHHBTTC---CEEEEEECS
T ss_pred HHhhHHHHHHHHhcCC---CCEEEeCCC
Confidence 56666665544444 356666665
No 338
>2g2c_A Putative molybdenum cofactor biosynthesis protein; structural genomics, PSI, protein structure initiative; 1.50A {Corynebacterium diphtheriae} SCOP: c.57.1.1
Probab=43.74 E-value=36 Score=31.54 Aligned_cols=63 Identities=17% Similarity=0.219 Sum_probs=43.4
Q ss_pred EEEEEEecCCc--C---cchHHHHHHH----HHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCCceEEEEEcc
Q 002371 161 EVIAIFNDDDQ--G---RNGVTALGDK----LAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY 227 (930)
Q Consensus 161 ~vaii~~d~~~--g---~~~~~~~~~~----l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~ 227 (930)
+++||...|+- | ......+.+. +++.|+++.....++.+ .+.+...+.++.+.++|+|+..+.
T Consensus 7 ~v~Ii~~GdEl~~G~i~D~n~~~l~~~~~~~l~~~G~~v~~~~iv~Dd----~~~I~~~l~~a~~~~~DlVittGG 78 (167)
T 2g2c_A 7 KSAIIVVSDRISTGTRENKALPLLQRLMSDELQDYSYELISEVVVPEG----YDTVVEAIATALKQGARFIITAGG 78 (167)
T ss_dssp EEEEEEECHHHHHTSSCCCHHHHHHHHHCC----CEEEEEEEEEECSS----HHHHHHHHHHHHHTTCSEEEEESC
T ss_pred EEEEEEECCcccCCceeccHHHHHHHhHHhHHHHCCCEEeEEEEeCCC----HHHHHHHHHHHHhCCCCEEEECCC
Confidence 67777654332 1 2345678888 89999999887777765 788888888887656899998753
No 339
>3muq_A Uncharacterized conserved protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.05A {Vibrio parahaemolyticus}
Probab=43.23 E-value=13 Score=36.99 Aligned_cols=75 Identities=11% Similarity=0.029 Sum_probs=51.4
Q ss_pred EEEeHHHHHHHHHHCCCcccEEEEeCCCCCCCCCHHHHHHHHHcCcccEEEecEEEecCcc---ceeeecccccccceEE
Q 002371 488 HGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGDIAIVTNRT---KAVDFTQPYIESGLVV 564 (930)
Q Consensus 488 ~G~~~dll~~l~~~ln~~~~~~~~~~~~~~~n~~~~~l~~~l~~g~~D~~~~~~~~t~~R~---~~vdfs~p~~~~~~~~ 564 (930)
.|+.-+|+..+.++.|.++.+.+ +.-..++.++.+|.+|+.+..-....+.. ....-..|+....+++
T Consensus 18 ~~ll~~L~~~Fek~~gv~V~~~~---------~gSg~ll~qi~~G~aDv~isa~~~~~~~l~~~g~~~~~~~~a~N~lVl 88 (237)
T 3muq_A 18 SGLLDYLLPQFEKDTGYKVDVIA---------AGTGKALKMGENGDVDLVMTHAPKAEGTFVEKGYGVLPRKLMYNDFVI 88 (237)
T ss_dssp HTHHHHHHHHHHHHHCCEEEEEE---------ECHHHHHHHHHTTSSSEEEECCHHHHHHHHHTTSEEEEEEEEEEEEEE
T ss_pred hhHHHHHHHHHHHHhCceEEEEE---------cChHHHHHHHhcCCCCEEEecCchhHHHHHhcCCccccEEEEeCCEEE
Confidence 46667888999988886655554 34667899999999999876432222111 0112346888899999
Q ss_pred EEeccCC
Q 002371 565 VAPVRKL 571 (930)
Q Consensus 565 ~v~~~~~ 571 (930)
++|+..+
T Consensus 89 V~P~~~P 95 (237)
T 3muq_A 89 VGPKADP 95 (237)
T ss_dssp EECTTCT
T ss_pred EEeCCCh
Confidence 9998763
No 340
>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}
Probab=42.90 E-value=40 Score=34.83 Aligned_cols=85 Identities=7% Similarity=0.048 Sum_probs=57.9
Q ss_pred CCeEEEE--eCchhHHHHHHhcCCCccceEeCCCHHHHHHHHHcCCcEEEEccch---------hhHHHHhcCcceEEeC
Q 002371 689 NDRVGYQ--VGSFAENYLIEELSIPKSRLVALGSPEEYAIALENRTVAAVVDERP---------YIDLFLSDHCQFSVRG 757 (930)
Q Consensus 689 ~~~i~~~--~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~---------~~~~~~~~~~~l~~~~ 757 (930)
..+|+++ .|+|.+.-..+.+......++++.+.+++++++.+|++|..+.... .++.+ .++.++++++
T Consensus 6 ~~~VaylGp~GtfS~~Aa~~~~~~~~~~~~p~~s~~~vf~aV~~g~~d~gVvPiENS~~G~V~~tlD~L-~~~~~l~Ivg 84 (313)
T 3mwb_A 6 AVTYTFLGPQGTFTEAALMQVPGAADATRIPCTNVNTALERVRAGEADAAMVPIENSVEGGVTATLDAI-ATGQELRIIR 84 (313)
T ss_dssp -CEEEEESSTTSHHHHHHTTSTTGGGSEEEEESSHHHHHHHHHTTSCSEEEEEEESCTTCCHHHHHHHT-TSSSCCEEEE
T ss_pred ccEEEEECCCCcHHHHHHHHHhhcCCccEEecCCHHHHHHHHHcCCCCeeEEEEeecCCCccHHHHHHh-hCCCCeEEEE
Confidence 4578887 5888777654322223356789999999999999999876655322 12222 3345799999
Q ss_pred CccccCccEEEecCCCc
Q 002371 758 QEFTKSGWGFAFPRDSP 774 (930)
Q Consensus 758 ~~~~~~~~~~~~~k~sp 774 (930)
|.+.+...++..++|..
T Consensus 85 E~~l~I~h~Ll~~~g~~ 101 (313)
T 3mwb_A 85 EALVPITFVLVARPGVE 101 (313)
T ss_dssp EEEEECCCEEEECTTCC
T ss_pred EEEEeeeEEEEcCCCCC
Confidence 98888777887776643
No 341
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=42.22 E-value=59 Score=32.42 Aligned_cols=79 Identities=1% Similarity=0.028 Sum_probs=54.6
Q ss_pred cEEEEEEec--CCcCcchHHHHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCCceEEEEEcch-hhHHHHHH
Q 002371 160 GEVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS-RTGLMVFD 236 (930)
Q Consensus 160 ~~vaii~~d--~~~g~~~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~-~~~~~~~~ 236 (930)
+.|+++..+ ++|.......+.+++++.|.++..... . . +...-...++.+.+.++|.+++.... ......++
T Consensus 2 ~~Igvi~~~~~~~f~~~~~~gi~~~~~~~g~~~~~~~~-~-~---~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~ 76 (271)
T 2dri_A 2 DTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDS-Q-N---NPAKELANVQDLTVRGTKILLINPTDSDAVGNAVK 76 (271)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHHTCEEEEEEC-T-T---CHHHHHHHHHHHTTTTEEEEEECCSSTTTTHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHHHHHHHHcCcEEEEeCC-C-C---CHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHH
Confidence 578888754 667778889999999999998775321 1 1 23444556788888899999986543 32235677
Q ss_pred HHHHcCC
Q 002371 237 VAQRLGM 243 (930)
Q Consensus 237 ~a~~~g~ 243 (930)
.+.+.|.
T Consensus 77 ~~~~~~i 83 (271)
T 2dri_A 77 MANQANI 83 (271)
T ss_dssp HHHHTTC
T ss_pred HHHHCCC
Confidence 7777775
No 342
>2jfz_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: 003 DGL; 1.86A {Helicobacter pylori} PDB: 2jfx_A* 2jfy_A* 2w4i_A*
Probab=42.19 E-value=1.2e+02 Score=30.25 Aligned_cols=38 Identities=11% Similarity=0.154 Sum_probs=27.8
Q ss_pred HHHHHHhcCcEEEEccCChhhHHHHHHhhhcCCCcEEE
Q 002371 83 GALQFMETDTLAIVGPQSAVMAHVLSHLANELQVPLLS 120 (930)
Q Consensus 83 ~a~~li~~~v~aiiGp~~S~~~~av~~~~~~~~vp~is 120 (930)
.+..|.+.++.+|+-+-.+..+.++-.+-+..++|+|.
T Consensus 54 ~~~~L~~~g~d~iviaCNTa~~~~~~~lr~~~~iPvig 91 (255)
T 2jfz_A 54 ALDFFKPHEIELLIVACNTASALALEEMQKYSKIPIVG 91 (255)
T ss_dssp HHHHHGGGCCSCEEECCHHHHHHTHHHHHHHCSSCEEC
T ss_pred HHHHHHHCCCCEEEEeCchhhHHHHHHHHHhCCCCEEe
Confidence 44445555999999877666655677777888999996
No 343
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=41.79 E-value=45 Score=33.43 Aligned_cols=118 Identities=10% Similarity=0.012 Sum_probs=70.4
Q ss_pred EEEeEEeecCCCcchHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhc--CcEEEEccCChhhH
Q 002371 27 LNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMET--DTLAIVGPQSAVMA 104 (930)
Q Consensus 27 I~IG~~~~l~~~~G~~~~~a~~lAve~iN~~ggil~g~~l~l~~~D~~~~~~~a~~~a~~li~~--~v~aiiGp~~S~~~ 104 (930)
=+|+++...... ...-..|+.-|+++.+ .++.........+...+...+.+++.. ++.||+... ...+
T Consensus 119 ~~i~~i~~~~~~-~~~R~~gf~~~l~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~-d~~a 188 (280)
T 3gyb_A 119 THIAHLRVGSGA-GLRRFESFEATMRAHG--------LEPLSNDYLGPAVEHAGYTETLALLKEHPEVTAIFSSN-DITA 188 (280)
T ss_dssp CSEEEECCSSHH-HHHHHHHHHHHHHHTT--------CCCEECCCCSCCCHHHHHHHHHHHHHHCTTCCEEEESS-HHHH
T ss_pred CeEEEEeCCCch-HHHHHHHHHHHHHHcC--------cCCCcccccCCCCHHHHHHHHHHHHhCCCCCCEEEECC-hHHH
Confidence 367777665433 5556778877777631 222222245556788888899999876 689999854 4455
Q ss_pred HHHHHhhhcCC------CcEEEeecCCCCCCCCCCCeEEEccCChHHHHHHHHHHHHH
Q 002371 105 HVLSHLANELQ------VPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSY 156 (930)
Q Consensus 105 ~av~~~~~~~~------vp~is~~a~~~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~ 156 (930)
..+...+.+.+ +.++++.... +.....|-+-....+...++...++.+..
T Consensus 189 ~g~~~al~~~g~~vP~di~vvg~d~~~--~~~~~~p~lttv~~~~~~~g~~av~~l~~ 244 (280)
T 3gyb_A 189 IGALGAARELGLRVPEDLSIIGYDNTP--LAQTRLINLTTIDDNSIGVGYNAALLLLS 244 (280)
T ss_dssp HHHHHHHHHHTCCTTTTCEEEEESCCH--HHHSTTTCCCEEECCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCeeEEEEECCch--HhhccCCCceEEecCHHHHHHHHHHHHHH
Confidence 55555555544 4477765432 22222344445556666777777766543
No 344
>3out_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, MURI, cell envelope; HET: MSE DGL; 1.65A {Francisella tularensis subsp}
Probab=41.59 E-value=55 Score=33.03 Aligned_cols=40 Identities=13% Similarity=0.164 Sum_probs=30.0
Q ss_pred HHHHHHHHhcCcEEEEccCChhhHHHHHHhhhcC-CCcEEE
Q 002371 81 IMGALQFMETDTLAIVGPQSAVMAHVLSHLANEL-QVPLLS 120 (930)
Q Consensus 81 ~~~a~~li~~~v~aiiGp~~S~~~~av~~~~~~~-~vp~is 120 (930)
.+.+..|.+.|+.+|+=+-.+..+.++-.+-+.. .+|+|.
T Consensus 59 ~~~~~~L~~~g~~~iVIACNTa~~~al~~lr~~~~~iPvig 99 (268)
T 3out_A 59 AQTAKFLIDQEVKAIIIACNTISAIAKDIVQEIAKAIPVID 99 (268)
T ss_dssp HHHHHHHHHTTCSEEEECCHHHHHHHHHHHHHHHTTSCEEE
T ss_pred HHHHHHHHHCCCCEEEEeCCChHHHHHHHHHHhcCCCCEEe
Confidence 3444556666999999987776666777777888 899997
No 345
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=41.35 E-value=96 Score=26.36 Aligned_cols=68 Identities=13% Similarity=0.179 Sum_probs=44.9
Q ss_pred cEEEEEEecCCcCcchHHHHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCCceEEEEEcc--hhhHHHHHHH
Q 002371 160 GEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY--SRTGLMVFDV 237 (930)
Q Consensus 160 ~~vaii~~d~~~g~~~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~--~~~~~~~~~~ 237 (930)
.+|.++ +|+. .....+.+.+++.|..+... . +....+..++...+|+|++... ..++..++++
T Consensus 7 ~~iliv-dd~~---~~~~~l~~~L~~~g~~v~~~---~--------~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~ 71 (132)
T 3lte_A 7 KRILVV-DDDQ---AMAAAIERVLKRDHWQVEIA---H--------NGFDAGIKLSTFEPAIMTLDLSMPKLDGLDVIRS 71 (132)
T ss_dssp CEEEEE-CSCH---HHHHHHHHHHHHTTCEEEEE---S--------SHHHHHHHHHHTCCSEEEEESCBTTBCHHHHHHH
T ss_pred ccEEEE-ECCH---HHHHHHHHHHHHCCcEEEEe---C--------CHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHH
Confidence 355444 3332 45677888888888876531 1 2234566667788999999744 4568888999
Q ss_pred HHHcC
Q 002371 238 AQRLG 242 (930)
Q Consensus 238 a~~~g 242 (930)
.++..
T Consensus 72 l~~~~ 76 (132)
T 3lte_A 72 LRQNK 76 (132)
T ss_dssp HHTTT
T ss_pred HHhcC
Confidence 88765
No 346
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=41.06 E-value=1.3e+02 Score=27.26 Aligned_cols=86 Identities=7% Similarity=-0.045 Sum_probs=50.0
Q ss_pred cEEEEEEecCCcCc--chHHHHHHHHHhcCcEEEEEEecCCCCCCChh-HHHHHHHHHhcCCceEEEEEcch--hhH--H
Q 002371 160 GEVIAIFNDDDQGR--NGVTALGDKLAEIRCKISYKSALPPDQSVTET-DVRNELVKVRMMEARVIVVHGYS--RTG--L 232 (930)
Q Consensus 160 ~~vaii~~d~~~g~--~~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~-d~~~~l~~l~~~~~~viv~~~~~--~~~--~ 232 (930)
+++.|+|. +.+|. ..++.+.+.+++.|+++... +.. .. +....+.++. +.|.|++.+.. ... .
T Consensus 5 ~kv~IvY~-S~~GnT~~iA~~ia~~l~~~g~~v~~~---~~~----~~~~~~~~~~~~~--~~d~ii~Gspty~g~~p~~ 74 (159)
T 3fni_A 5 TSIGVFYV-SEYGYSDRLAQAIINGITKTGVGVDVV---DLG----AAVDLQELRELVG--RCTGLVIGMSPAASAASIQ 74 (159)
T ss_dssp CEEEEEEC-TTSTTHHHHHHHHHHHHHHTTCEEEEE---ESS----SCCCHHHHHHHHH--TEEEEEEECCBTTSHHHHH
T ss_pred CEEEEEEE-CCChHHHHHHHHHHHHHHHCCCeEEEE---ECc----CcCCHHHHHHHHH--hCCEEEEEcCcCCCCccHH
Confidence 58889984 34555 45788899998888875432 222 22 4444555554 46888876433 222 3
Q ss_pred HHHHHHHHcCCCCCceEEEEeCc
Q 002371 233 MVFDVAQRLGMMDSGYVWIATTW 255 (930)
Q Consensus 233 ~~~~~a~~~g~~~~~~~~i~~~~ 255 (930)
.++.......+.+.....+++.+
T Consensus 75 ~~l~~l~~~~~~~k~va~fgs~g 97 (159)
T 3fni_A 75 GALSTILGSVNEKQAVGIFETGG 97 (159)
T ss_dssp HHHHHHHHHCCTTSEEEEECCSS
T ss_pred HHHHHHHhhcccCCEEEEEEcCC
Confidence 56666666555444444444433
No 347
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=40.80 E-value=62 Score=30.07 Aligned_cols=62 Identities=11% Similarity=0.115 Sum_probs=42.4
Q ss_pred cEEEEEEecCCc--C---cchHHHHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCCceEEEEEc
Q 002371 160 GEVIAIFNDDDQ--G---RNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHG 226 (930)
Q Consensus 160 ~~vaii~~d~~~--g---~~~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~ 226 (930)
-++++|...|+- | ......+.+.+++.|+++.....++.+ .+.+...+.++.+ ++|+||..+
T Consensus 4 ~~v~IistGdEll~G~i~DtN~~~l~~~L~~~G~~v~~~~iv~Dd----~~~I~~~l~~a~~-~~DlVittG 70 (172)
T 3kbq_A 4 KNASVITVGNEILKGRTVNTNAAFIGNFLTYHGYQVRRGFVVMDD----LDEIGWAFRVALE-VSDLVVSSG 70 (172)
T ss_dssp CEEEEEEECHHHHTTSSCCHHHHHHHHHHHHTTCEEEEEEEECSC----HHHHHHHHHHHHH-HCSEEEEES
T ss_pred CEEEEEEEcccccCCcEEeHHHHHHHHHHHHCCCEEEEEEEeCCC----HHHHHHHHHHHHh-cCCEEEEcC
Confidence 467777755431 2 234567888888889888877777755 6777777777654 378887764
No 348
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=40.78 E-value=51 Score=33.10 Aligned_cols=70 Identities=6% Similarity=-0.018 Sum_probs=49.6
Q ss_pred HHHHHcCCcEEEEEEec--CCcCcchHHHHHHHHHhcCcE-EEEEEecCCCCCCChhHHHHHHHHHhcCCceEEEEEc
Q 002371 152 EMVSYFGWGEVIAIFND--DDQGRNGVTALGDKLAEIRCK-ISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHG 226 (930)
Q Consensus 152 ~~l~~~~w~~vaii~~d--~~~g~~~~~~~~~~l~~~g~~-i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~ 226 (930)
+-++.-.-+.|+++..+ ++|.......+.+++++.|.. +... ... .+...-...++.+.+.+.|.||+..
T Consensus 3 r~L~~~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~---~~~--~~~~~~~~~~~~l~~~~vdgiIi~~ 75 (277)
T 3hs3_A 3 LTLYQKKSKMIGIIIPDLNNRFYAQIIDGIQEVIQKEGYTALISF---STN--SDVKKYQNAIINFENNNVDGIITSA 75 (277)
T ss_dssp -----CCCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEE---CSS--CCHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred hhhhcCCCCEEEEEeCCCCChhHHHHHHHHHHHHHHCCCCEEEEE---eCC--CChHHHHHHHHHHHhCCCCEEEEcc
Confidence 33445556789999865 677788889999999999998 6542 222 2255566678888889999999987
No 349
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=40.52 E-value=2.5e+02 Score=27.75 Aligned_cols=120 Identities=13% Similarity=0.089 Sum_probs=67.8
Q ss_pred eEEEeEEeecC-CCcchHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhc--CcEEEEccCChh
Q 002371 26 VLNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMET--DTLAIVGPQSAV 102 (930)
Q Consensus 26 ~I~IG~~~~l~-~~~G~~~~~a~~lAve~iN~~ggil~g~~l~l~~~D~~~~~~~a~~~a~~li~~--~v~aiiGp~~S~ 102 (930)
.=+||++.... ......-..|++-|+++. | ..+.- ......+...+...+.+++.. ++.||+... ..
T Consensus 131 ~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~---g-----~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~-d~ 200 (289)
T 3brs_A 131 SGKIGVISFVKNSKTAMDREEGLKIGLSDD---S-----NKIEA-IYYCDSNYDKAYDGTVELLTKYPDISVMVGLN-QY 200 (289)
T ss_dssp SCEEEEEESCTTSHHHHHHHHHHHHHHGGG---G-----GGEEE-EEECTTCHHHHHHHHHHHHHHCTTEEEEEESS-HH
T ss_pred CceEEEEECCCCCccHHHHHHHHHHHHHhC---C-----CcEEe-eecCCCCHHHHHHHHHHHHHhCCCceEEEECC-Cc
Confidence 34677776542 333445567777777662 1 11211 223345777788888888875 589999854 34
Q ss_pred hHHHHHHhhhcCC----CcEEEeecCCCCCCCCCCCeE-EEccCChHHHHHHHHHHHH
Q 002371 103 MAHVLSHLANELQ----VPLLSFTALDPTLSPLQYPFF-VQTAPNDLYLMSAIAEMVS 155 (930)
Q Consensus 103 ~~~av~~~~~~~~----vp~is~~a~~~~ls~~~~~~~-fr~~p~~~~~~~ai~~~l~ 155 (930)
.+..+...+.+.+ +.++++........-...|.+ -....+...++...++.+.
T Consensus 201 ~a~g~~~al~~~G~~~di~vvg~d~~~~~~~~~~~~~l~ttv~~~~~~~g~~a~~~l~ 258 (289)
T 3brs_A 201 SATGAARAIKDMSLEAKVKLVCIDSSMEQIQYLEEGIFEAMVVQKPFNIGYLGVEKAL 258 (289)
T ss_dssp HHHHHHHHHHHTTCTTTSEEEEEESCSCC-----CCSCCEEEECCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHhcCCCCCEEEEEECCCHHHHHHHHCCceEEEEecChHHHHHHHHHHHH
Confidence 5555556665554 678887665432111111334 4445566667776666643
No 350
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=40.44 E-value=54 Score=31.55 Aligned_cols=99 Identities=15% Similarity=0.157 Sum_probs=57.1
Q ss_pred HHHHHHHHHcCCcEEEEEEecC--CcCcchHHHHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCCceEEEEE
Q 002371 148 SAIAEMVSYFGWGEVIAIFNDD--DQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVH 225 (930)
Q Consensus 148 ~ai~~~l~~~~w~~vaii~~d~--~~g~~~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~ 225 (930)
..+.+++...+-++|++|-... +-.......+.+++++.|.++.... +.. .+.+++... ++ ++|+|++.
T Consensus 16 ~~~~~f~~~~~~~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~~-i~~---~~~~~~~~~---l~--~ad~I~l~ 86 (206)
T 3l4e_A 16 PLFTEFESNLQGKTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEELD-IAT---ESLGEITTK---LR--KNDFIYVT 86 (206)
T ss_dssp HHHHHHSCCCTTCEEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEECC-TTT---SCHHHHHHH---HH--HSSEEEEC
T ss_pred HHHHHHHHHcCCCEEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEEE-ecC---CChHHHHHH---HH--hCCEEEEC
Confidence 3344455455568999884211 1113467889999999999865321 111 124444444 43 36888887
Q ss_pred cchhhHHHHHHHHHHcCCCC-------CceEEEEeCccc
Q 002371 226 GYSRTGLMVFDVAQRLGMMD-------SGYVWIATTWLS 257 (930)
Q Consensus 226 ~~~~~~~~~~~~a~~~g~~~-------~~~~~i~~~~~~ 257 (930)
+ .+...+++.+++.|+.. .+.+++++....
T Consensus 87 G--G~~~~l~~~L~~~gl~~~l~~~~~~G~p~~G~sAGa 123 (206)
T 3l4e_A 87 G--GNTFFLLQELKRTGADKLILEEIAAGKLYIGESAGA 123 (206)
T ss_dssp C--SCHHHHHHHHHHHTHHHHHHHHHHTTCEEEEETHHH
T ss_pred C--CCHHHHHHHHHHCChHHHHHHHHHcCCeEEEECHHH
Confidence 6 33446677777666532 345677766443
No 351
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=40.41 E-value=1.2e+02 Score=29.06 Aligned_cols=88 Identities=11% Similarity=0.042 Sum_probs=58.7
Q ss_pred CcEEEEEEecCCcCcchHHHHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCCceEEEEEcch----hhHHHH
Q 002371 159 WGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS----RTGLMV 234 (930)
Q Consensus 159 w~~vaii~~d~~~g~~~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~----~~~~~~ 234 (930)
-.+|.+.....+.-.-+...+...++..|.++.+-. .. ......+..++..+||+|.+.+.. .....+
T Consensus 88 ~~~vll~~~~gd~H~iG~~~va~~l~~~G~~v~~LG---~~-----vp~~~l~~~~~~~~~d~v~lS~~~~~~~~~~~~~ 159 (210)
T 1y80_A 88 VGKIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLG---VD-----IEPGKFVEAVKKYQPDIVGMSALLTTTMMNMKST 159 (210)
T ss_dssp CCEEEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECC---SS-----BCHHHHHHHHHHHCCSEEEEECCSGGGTHHHHHH
T ss_pred CCEEEEEeCCCcccHHHHHHHHHHHHHCCCEEEECC---CC-----CCHHHHHHHHHHcCCCEEEEeccccccHHHHHHH
Confidence 346777766666666677888889999999987522 11 223345566666789999997643 457778
Q ss_pred HHHHHHcCCCCCceEEEEeC
Q 002371 235 FDVAQRLGMMDSGYVWIATT 254 (930)
Q Consensus 235 ~~~a~~~g~~~~~~~~i~~~ 254 (930)
+++.++.|....-.+++++.
T Consensus 160 i~~l~~~~~~~~~~v~vGG~ 179 (210)
T 1y80_A 160 IDALIAAGLRDRVKVIVGGA 179 (210)
T ss_dssp HHHHHHTTCGGGCEEEEEST
T ss_pred HHHHHhcCCCCCCeEEEECC
Confidence 88888887643334555543
No 352
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=40.01 E-value=50 Score=34.26 Aligned_cols=79 Identities=5% Similarity=-0.014 Sum_probs=55.4
Q ss_pred cEEEEEEe--cCCcCcchHHHHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCC--ceEEEEEcchhh-HHHH
Q 002371 160 GEVIAIFN--DDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMME--ARVIVVHGYSRT-GLMV 234 (930)
Q Consensus 160 ~~vaii~~--d~~~g~~~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~--~~viv~~~~~~~-~~~~ 234 (930)
++|+++.. +++|.......+.+++++.|.++..... . .+.......++.+.+.+ +|.||+...... ....
T Consensus 6 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~l~~~~~---~--~~~~~~~~~i~~l~~~~~~vdgiIi~~~~~~~~~~~ 80 (332)
T 2rjo_A 6 TTLACSFRSLTNPYYTAFNKGAQSFAKSVGLPYVPLTT---E--GSSEKGIADIRALLQKTGGNLVLNVDPNDSADARVI 80 (332)
T ss_dssp CEEEEEESCTTSHHHHHHHHHHHHHHHHHTCCEEEEEC---T--TCHHHHHHHHHHHHHHTTTCEEEEECCSSHHHHHHH
T ss_pred cEEEEEecCCCcHHHHHHHHHHHHHHHHcCCEEEEecC---C--CCHHHHHHHHHHHHHCCCCCCEEEEeCCCHHHHHHH
Confidence 57888885 3667777889999999999998765421 1 22444556777877778 999998765433 3456
Q ss_pred HHHHHHcCC
Q 002371 235 FDVAQRLGM 243 (930)
Q Consensus 235 ~~~a~~~g~ 243 (930)
++.+.+.|+
T Consensus 81 ~~~~~~~~i 89 (332)
T 2rjo_A 81 VEACSKAGA 89 (332)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHCCC
Confidence 777777675
No 353
>2vd3_A ATP phosphoribosyltransferase; metal-binding, glycosyltransferase, HISG, histidine, magnesi transferase; HET: HIS; 2.45A {Methanobacterium thermoautotrophicum}
Probab=39.89 E-value=45 Score=33.88 Aligned_cols=101 Identities=17% Similarity=0.125 Sum_probs=61.6
Q ss_pred CCCChHHhhhCCCeEEEEeCchhHHHHHHhcCCCccceEeCC-CHHHHHHHHHcCCcEEEEccchhhHHHHhcCcceEEe
Q 002371 678 PIKGIDTLMTSNDRVGYQVGSFAENYLIEELSIPKSRLVALG-SPEEYAIALENRTVAAVVDERPYIDLFLSDHCQFSVR 756 (930)
Q Consensus 678 ~i~sl~dL~~s~~~i~~~~~s~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~~~l~~~ 756 (930)
++++++||. .+++|+...-...+.||. +.+.+ .+++... +.|-. ..-|-.|++++-.....-+.++ +|.++
T Consensus 105 ~~~~~~~l~-~~~RIATkyp~l~~~yf~-~~gi~-~~ii~l~GsvE~a---p~~GlADaIvDivsTG~TLraN--gL~~i 176 (289)
T 2vd3_A 105 TIRGPEDIP-RGAVIATEFPGITENYLR-EHGID-AEVVELTGSTEIA---PFIGVADLITDLSSTGTTLRMN--HLRVI 176 (289)
T ss_dssp SCCSGGGCC-TTCEEEESCHHHHHHHHH-HTTCC-CEEEECSSCGGGT---TTTTSCSEEEEEESSTHHHHHT--TEEEE
T ss_pred CCCCHHHhc-CCCEEEeCcHHHHHHHHH-HcCCc-EEEEECCCceeec---cCCCcccEEEEEeCChHHHHHC--CCEEe
Confidence 456778873 378999988888999994 45554 3455443 44422 3347889999877766665444 46677
Q ss_pred CCccccCccEEEecCCC-cc-hhHHHHHHHhcc
Q 002371 757 GQEFTKSGWGFAFPRDS-PL-AIDMSTAILTLS 787 (930)
Q Consensus 757 ~~~~~~~~~~~~~~k~s-pl-~~~~n~~i~~l~ 787 (930)
+..+ ...-.++..|.+ +. .+.++..+.++.
T Consensus 177 e~I~-~ssA~LI~n~~s~~~k~~~i~~l~~rl~ 208 (289)
T 2vd3_A 177 DTIL-ESSVKLIANRESYATKSGIIEELRTGIR 208 (289)
T ss_dssp EEEE-EECEEEEECHHHHHHSHHHHHHHHHHHH
T ss_pred EEEE-eeEEEEEEccchhhhHHHHHHHHHHHHH
Confidence 4444 444556666665 22 234555555543
No 354
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=39.81 E-value=44 Score=33.85 Aligned_cols=80 Identities=9% Similarity=-0.050 Sum_probs=53.7
Q ss_pred CCcEEEEEEec--CCcCcchHHHHHHHHHhcCcEEEEEEecCCCCCCChhHHHH---HHHHHhcCCceEEEEEcchhhHH
Q 002371 158 GWGEVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRN---ELVKVRMMEARVIVVHGYSRTGL 232 (930)
Q Consensus 158 ~w~~vaii~~d--~~~g~~~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~---~l~~l~~~~~~viv~~~~~~~~~ 232 (930)
.-+.|+++..+ ++|.......+.+++++.|..+..... . . +...... .++.+.+.+.|.|++...... .
T Consensus 7 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~-~---~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~-~ 80 (290)
T 2rgy_A 7 QLGIIGLFVPTFFGSYYGTILKQTDLELRAVHRHVVVATG-C-G---ESTPREQALEAVRFLIGRDCDGVVVISHDLH-D 80 (290)
T ss_dssp -CCEEEEECSCSCSHHHHHHHHHHHHHHHHTTCEEEEECC-C-S---SSCHHHHHHHHHHHHHHTTCSEEEECCSSSC-H
T ss_pred CCCeEEEEeCCCCCchHHHHHHHHHHHHHHCCCEEEEEeC-C-C---chhhhhhHHHHHHHHHhcCccEEEEecCCCC-H
Confidence 34578888753 667778889999999999998765321 1 1 1233344 677888889999998764433 3
Q ss_pred HHHHHHHHcCC
Q 002371 233 MVFDVAQRLGM 243 (930)
Q Consensus 233 ~~~~~a~~~g~ 243 (930)
..++.+.+.|+
T Consensus 81 ~~~~~l~~~~i 91 (290)
T 2rgy_A 81 EDLDELHRMHP 91 (290)
T ss_dssp HHHHHHHHHCS
T ss_pred HHHHHHhhcCC
Confidence 45666666675
No 355
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=39.20 E-value=96 Score=32.24 Aligned_cols=78 Identities=9% Similarity=0.059 Sum_probs=56.7
Q ss_pred cEEEEEEec--CCcCcchHHHHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchhhHHHHHHH
Q 002371 160 GEVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDV 237 (930)
Q Consensus 160 ~~vaii~~d--~~~g~~~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~~~~~~~~~ 237 (930)
+.|+++..+ ++|.......+.+++++.|..+.... .. .+.......++.+.+.+.|.||+....... ..++.
T Consensus 69 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~-~~----~~~~~~~~~i~~l~~~~vdGiIi~~~~~~~-~~~~~ 142 (344)
T 3kjx_A 69 NLVAVIIPSLSNMVFPEVLTGINQVLEDTELQPVVGV-TD----YLPEKEEKVLYEMLSWRPSGVIIAGLEHSE-AARAM 142 (344)
T ss_dssp SEEEEEESCSSSSSHHHHHHHHHHHHTSSSSEEEEEE-CT----TCHHHHHHHHHHHHTTCCSEEEEECSCCCH-HHHHH
T ss_pred CEEEEEeCCCCcHHHHHHHHHHHHHHHHCCCEEEEEe-CC----CCHHHHHHHHHHHHhCCCCEEEEECCCCCH-HHHHH
Confidence 478888854 67778888999999999999986532 11 124556677888888999999997654332 56677
Q ss_pred HHHcCC
Q 002371 238 AQRLGM 243 (930)
Q Consensus 238 a~~~g~ 243 (930)
+.+.|+
T Consensus 143 l~~~~i 148 (344)
T 3kjx_A 143 LDAAGI 148 (344)
T ss_dssp HHHCSS
T ss_pred HHhCCC
Confidence 777775
No 356
>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}
Probab=38.98 E-value=75 Score=32.24 Aligned_cols=79 Identities=16% Similarity=0.102 Sum_probs=58.6
Q ss_pred CCeEEEE--eCchhHHHHHHhcCCCccceEeCCCHHHHHHHHHcCCcEEEEccch---------hhHHHHhcCcceEEeC
Q 002371 689 NDRVGYQ--VGSFAENYLIEELSIPKSRLVALGSPEEYAIALENRTVAAVVDERP---------YIDLFLSDHCQFSVRG 757 (930)
Q Consensus 689 ~~~i~~~--~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~---------~~~~~~~~~~~l~~~~ 757 (930)
..+|+++ .|+|.+.-..+.+ .++++.+.+++++++.+|++|..+.... ..+.+.+ .++++++
T Consensus 6 ~~~iaylGp~Gtfs~~Aa~~~f-----~~~p~~s~~~vf~aV~~g~~d~gVvPiENS~~G~V~~t~DlL~~--~~l~I~g 78 (283)
T 2qmx_A 6 NWLIAYQGEPGAYSEIAALRFG-----EPLPCESFDDVFSAVTEQKADYAVIPIENSLGGSIHQNYDLLLR--RPVVILA 78 (283)
T ss_dssp CCEEEEESCTTSHHHHHHHHHS-----EEEEESCHHHHHHHHHTTSCSEEEEEEEESSSCBCHHHHHHHHH--SSEEEEE
T ss_pred CcEEEEECCCCCHHHHHHHHHh-----HhCcCCCHHHHHHHHHCCCCCEEEEeehhcCCCccHHHHHHhhc--CCcEEEE
Confidence 3568886 6888777664433 5789999999999999999877766422 2344444 5799999
Q ss_pred CccccCccEEEecCCCc
Q 002371 758 QEFTKSGWGFAFPRDSP 774 (930)
Q Consensus 758 ~~~~~~~~~~~~~k~sp 774 (930)
+.+.+...++...+|..
T Consensus 79 E~~l~I~h~Ll~~~g~~ 95 (283)
T 2qmx_A 79 ETFVKVEHCLLGLPGAS 95 (283)
T ss_dssp EEEEECCCEEEECSSCC
T ss_pred EEEEeeeeeEecCCCCC
Confidence 98888888888877743
No 357
>4a29_A Engineered retro-aldol enzyme RA95.0; de novo protein, engineered enzyme, retro-aldolase, directed evolution; HET: 3NK MLT; 1.10A {Synthetic construct} PDB: 4a2s_A* 4a2r_A* 3tc7_A 3tc6_A 3nl8_A* 3nxf_A* 3o6y_X 3ud6_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 1a53_A* 1lbf_A* 1lbl_A* 3nyz_A 3nz1_A* 3uy7_A 3uxd_A* 3uxa_A* ...
Probab=38.83 E-value=1e+02 Score=30.52 Aligned_cols=85 Identities=9% Similarity=0.042 Sum_probs=61.4
Q ss_pred HHHHHHHcCCcEEEEEEecCCcCcchHHHHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCCceEEEEEcc--
Q 002371 150 IAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY-- 227 (930)
Q Consensus 150 i~~~l~~~~w~~vaii~~d~~~g~~~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~-- 227 (930)
++++.+ -|..-+.|+. |..|..+..+.+...-+...+.|.-+..+ .+ . -++.+.+..++|+|++.+.
T Consensus 69 iA~~~~-~GA~aiSVLT-d~~~F~Gs~~~L~~vr~~v~lPvLrKDFi-id------~--yQI~eAr~~GADaILLI~a~L 137 (258)
T 4a29_A 69 YAKFME-RYAVGLSITT-EEKYFNGSYETLRKIASSVSIPILMSDFI-VK------E--SQIDDAYNLGADTVLLIVKIL 137 (258)
T ss_dssp HHHHHT-TTCSEEEEEC-CSTTTCCCHHHHHHHHTTCSSCEEEESCC-CS------H--HHHHHHHHHTCSEEEEEGGGS
T ss_pred HHHHHh-CCCeEEEEeC-CCCCCCCCHHHHHHHHHhcCCCEeecccc-cc------H--HHHHHHHHcCCCeeehHHhhc
Confidence 455544 4777777776 66677888888888877778877655333 22 2 2577778889999998654
Q ss_pred -hhhHHHHHHHHHHcCCCC
Q 002371 228 -SRTGLMVFDVAQRLGMMD 245 (930)
Q Consensus 228 -~~~~~~~~~~a~~~g~~~ 245 (930)
..+...+...|+++||..
T Consensus 138 ~~~~l~~l~~~A~~lGl~~ 156 (258)
T 4a29_A 138 TERELESLLEYARSYGMEP 156 (258)
T ss_dssp CHHHHHHHHHHHHHTTCCC
T ss_pred CHHHHHHHHHHHHHHhHHH
Confidence 467889999999999963
No 358
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=38.80 E-value=48 Score=33.63 Aligned_cols=79 Identities=8% Similarity=0.073 Sum_probs=54.9
Q ss_pred CCcEEEEEEe------cCCcCcchHHHHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchhhH
Q 002371 158 GWGEVIAIFN------DDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTG 231 (930)
Q Consensus 158 ~w~~vaii~~------d~~~g~~~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~~~ 231 (930)
.-+.|+++.. +++|.......+.+++++.|..+.....-. .......++.+.+.+.|.||+.......
T Consensus 5 ~s~~Igvi~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~------~~~~~~~~~~l~~~~vdGiIi~~~~~~~ 78 (294)
T 3qk7_A 5 RTDAIALAYPSRPRVLNNSTFLEMISWIGIELGKRGLDLLLIPDEP------GEKYQSLIHLVETRRVDALIVAHTQPED 78 (294)
T ss_dssp CCCEEEEEEESCSGGGSCHHHHHHHHHHHHHHHHTTCEEEEEEECT------TCCCHHHHHHHHHTCCSEEEECSCCSSC
T ss_pred ccceEEEEecCCCccccChhHHHHHHHHHHHHHHCCCEEEEEeCCC------hhhHHHHHHHHHcCCCCEEEEeCCCCCh
Confidence 3467888886 356777788999999999999887654322 1223445667777889999987654322
Q ss_pred HHHHHHHHHcCC
Q 002371 232 LMVFDVAQRLGM 243 (930)
Q Consensus 232 ~~~~~~a~~~g~ 243 (930)
..++.+.+.|+
T Consensus 79 -~~~~~l~~~~i 89 (294)
T 3qk7_A 79 -FRLQYLQKQNF 89 (294)
T ss_dssp -HHHHHHHHTTC
T ss_pred -HHHHHHHhCCC
Confidence 56677777775
No 359
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=38.10 E-value=54 Score=32.68 Aligned_cols=78 Identities=8% Similarity=0.050 Sum_probs=54.0
Q ss_pred cEEEEEEec--CCcCcchHHHHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchhhHHHHHHH
Q 002371 160 GEVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDV 237 (930)
Q Consensus 160 ~~vaii~~d--~~~g~~~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~~~~~~~~~ 237 (930)
++|+++..+ ++|.......+.+++++.|..+.... .. .+.......++.+...+.|.+|+...... ...++.
T Consensus 4 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~---~~--~~~~~~~~~~~~l~~~~vdgii~~~~~~~-~~~~~~ 77 (275)
T 3d8u_A 4 YSIALIIPSLFEKACAHFLPSFQQALNKAGYQLLLGY---SD--YSIEQEEKLLSTFLESRPAGVVLFGSEHS-QRTHQL 77 (275)
T ss_dssp CEEEEEESCSSCHHHHHHHHHHHHHHHHTSCEECCEE---CT--TCHHHHHHHHHHHHTSCCCCEEEESSCCC-HHHHHH
T ss_pred eEEEEEeCCCccccHHHHHHHHHHHHHHCCCEEEEEc---CC--CCHHHHHHHHHHHHhcCCCEEEEeCCCCC-HHHHHH
Confidence 478888754 56777788999999999999876432 11 22445566788888889999888764322 245666
Q ss_pred HHHcCC
Q 002371 238 AQRLGM 243 (930)
Q Consensus 238 a~~~g~ 243 (930)
+.+.|.
T Consensus 78 l~~~~i 83 (275)
T 3d8u_A 78 LEASNT 83 (275)
T ss_dssp HHHHTC
T ss_pred HHhCCC
Confidence 766664
No 360
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=37.91 E-value=2.1e+02 Score=25.13 Aligned_cols=58 Identities=10% Similarity=0.087 Sum_probs=42.1
Q ss_pred chHHHHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCCceEEEEEcc--hhhHHHHHHHHHHcC
Q 002371 174 NGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY--SRTGLMVFDVAQRLG 242 (930)
Q Consensus 174 ~~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~--~~~~~~~~~~a~~~g 242 (930)
.....+.+.+++.|..+.. . .+....+..++...+|+|++... ..++..++++.++..
T Consensus 18 ~~~~~l~~~L~~~g~~v~~---~--------~~~~~al~~l~~~~~dlii~D~~l~~~~g~~~~~~lr~~~ 77 (154)
T 3gt7_A 18 TQAEHLKHILEETGYQTEH---V--------RNGREAVRFLSLTRPDLIISDVLMPEMDGYALCRWLKGQP 77 (154)
T ss_dssp HHHHHHHHHHHTTTCEEEE---E--------SSHHHHHHHHTTCCCSEEEEESCCSSSCHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHCCCEEEE---e--------CCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCC
Confidence 4678888889988877642 1 13345667777788999999653 457888899888864
No 361
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=37.89 E-value=57 Score=32.61 Aligned_cols=78 Identities=4% Similarity=-0.054 Sum_probs=54.5
Q ss_pred CCcEEEEEEec--CCcCcchHHHHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchhhHHHHH
Q 002371 158 GWGEVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVF 235 (930)
Q Consensus 158 ~w~~vaii~~d--~~~g~~~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~~~~~~~ 235 (930)
+-+.|+++..+ ++|.......+.+++++.|..+..... . .+.......++.+.+.++|.||+.... ...+
T Consensus 7 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~-~----~~~~~~~~~~~~l~~~~~dgiIi~~~~---~~~~ 78 (277)
T 3e61_A 7 KSKLIGLLLPDMSNPFFTLIARGVEDVALAHGYQVLIGNS-D----NDIKKAQGYLATFVSHNCTGMISTAFN---ENII 78 (277)
T ss_dssp ---CEEEEESCTTSHHHHHHHHHHHHHHHHTTCCEEEEEC-T----TCHHHHHHHHHHHHHTTCSEEEECGGG---HHHH
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEeC-C----CCHHHHHHHHHHHHhCCCCEEEEecCC---hHHH
Confidence 34678888864 677788889999999999998875321 1 225556678888888999999997733 2346
Q ss_pred H-HHHHcCC
Q 002371 236 D-VAQRLGM 243 (930)
Q Consensus 236 ~-~a~~~g~ 243 (930)
+ .+.+.|+
T Consensus 79 ~~~l~~~~i 87 (277)
T 3e61_A 79 ENTLTDHHI 87 (277)
T ss_dssp HHHHHHC-C
T ss_pred HHHHHcCCC
Confidence 6 7777775
No 362
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=37.74 E-value=79 Score=27.86 Aligned_cols=59 Identities=8% Similarity=0.031 Sum_probs=41.3
Q ss_pred chHHHHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCCceEEEEE--cchhhHHHHHHHHHHcC
Q 002371 174 NGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVH--GYSRTGLMVFDVAQRLG 242 (930)
Q Consensus 174 ~~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~--~~~~~~~~~~~~a~~~g 242 (930)
.....++..|++.|.+++... .+-...+..+++..+|+|++- +..-++..++++.++..
T Consensus 23 ~~r~~l~~~L~~~G~~~v~~a----------~~g~~al~~~~~~~~DlillD~~MP~mdG~el~~~ir~~~ 83 (134)
T 3to5_A 23 TMRRIVKNLLRDLGFNNTQEA----------DDGLTALPMLKKGDFDFVVTDWNMPGMQGIDLLKNIRADE 83 (134)
T ss_dssp HHHHHHHHHHHHTTCCCEEEE----------SSHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHcCCcEEEEE----------CCHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHhCC
Confidence 566788888998898644321 122345666677789999985 55568888999988754
No 363
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=37.73 E-value=90 Score=26.97 Aligned_cols=58 Identities=7% Similarity=-0.019 Sum_probs=40.0
Q ss_pred chHHHHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCCceEEEEEc--chhhHHHHHHHHHHcC
Q 002371 174 NGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHG--YSRTGLMVFDVAQRLG 242 (930)
Q Consensus 174 ~~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~--~~~~~~~~~~~a~~~g 242 (930)
.....+...+++.|..+.. .. +....+..+....+|+|++.. ...++..++++.++..
T Consensus 15 ~~~~~l~~~L~~~g~~v~~---~~--------~~~~al~~~~~~~~dlvl~D~~lp~~~g~~~~~~lr~~~ 74 (136)
T 3t6k_A 15 TVAEMLELVLRGAGYEVRR---AA--------SGEEALQQIYKNLPDALICDVLLPGIDGYTLCKRVRQHP 74 (136)
T ss_dssp HHHHHHHHHHHHTTCEEEE---ES--------SHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHSG
T ss_pred HHHHHHHHHHHHCCCEEEE---eC--------CHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHcCC
Confidence 4667788888888877642 11 223455666778899999964 3457888888888753
No 364
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=37.54 E-value=34 Score=34.64 Aligned_cols=81 Identities=5% Similarity=-0.115 Sum_probs=56.9
Q ss_pred cCCcEEEEEEec--CCcCcchHHHHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchhhHHHH
Q 002371 157 FGWGEVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMV 234 (930)
Q Consensus 157 ~~w~~vaii~~d--~~~g~~~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~~~~~~ 234 (930)
-.-+.|+++..+ ++|.......+.+++++.|..+..... . .+.......++.+.+.+.|.||+..... ....
T Consensus 6 ~~~~~Igvv~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~----~~~~~~~~~~~~l~~~~vdgiIi~~~~~-~~~~ 79 (291)
T 3egc_A 6 KRSNVVGLIVSDIENVFFAEVASGVESEARHKGYSVLLANT-A----EDIVREREAVGQFFERRVDGLILAPSEG-EHDY 79 (291)
T ss_dssp -CCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEEC-T----TCHHHHHHHHHHHHHTTCSEEEECCCSS-CCHH
T ss_pred CCCcEEEEEECCCcchHHHHHHHHHHHHHHHCCCEEEEEeC-C----CCHHHHHHHHHHHHHCCCCEEEEeCCCC-ChHH
Confidence 345788998864 567777889999999999998875432 1 2255567788888889999999876543 3345
Q ss_pred HHHHHHcCC
Q 002371 235 FDVAQRLGM 243 (930)
Q Consensus 235 ~~~a~~~g~ 243 (930)
++.+.+.|+
T Consensus 80 ~~~~~~~~i 88 (291)
T 3egc_A 80 LRTELPKTF 88 (291)
T ss_dssp HHHSSCTTS
T ss_pred HHHhhccCC
Confidence 556655554
No 365
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=37.41 E-value=90 Score=32.10 Aligned_cols=80 Identities=6% Similarity=-0.025 Sum_probs=54.5
Q ss_pred CcEEEEEEec-CCcCcchHHHHHHHHHhc-CcEEEEEEecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchhh-HHHHH
Q 002371 159 WGEVIAIFND-DDQGRNGVTALGDKLAEI-RCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRT-GLMVF 235 (930)
Q Consensus 159 w~~vaii~~d-~~~g~~~~~~~~~~l~~~-g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~~-~~~~~ 235 (930)
-.+|+++..+ ++|.......+.+++++. |.++..... . .+.......++++.+.++|.||+.....+ ....+
T Consensus 6 ~~~Igvi~~~~~~~~~~~~~gi~~~a~~~~g~~l~i~~~-~----~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~ 80 (325)
T 2x7x_A 6 HFRIGVAQCSDDSWRHKMNDEILREAMFYNGVSVEIRSA-G----DDNSKQAEDVHYFMDEGVDLLIISANEAAPMTPIV 80 (325)
T ss_dssp CCEEEEEESCCSHHHHHHHHHHHHHHTTSSSCEEEEEEC-T----TCHHHHHHHHHHHHHTTCSEEEECCSSHHHHHHHH
T ss_pred CeEEEEEecCCCHHHHHHHHHHHHHHHHcCCcEEEEeCC-C----CCHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHH
Confidence 4578888764 445556778888888888 998775421 1 12445556778888889999998765433 34567
Q ss_pred HHHHHcCC
Q 002371 236 DVAQRLGM 243 (930)
Q Consensus 236 ~~a~~~g~ 243 (930)
+++.+.|+
T Consensus 81 ~~~~~~~i 88 (325)
T 2x7x_A 81 EEAYQKGI 88 (325)
T ss_dssp HHHHHTTC
T ss_pred HHHHHCCC
Confidence 77777675
No 366
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=36.72 E-value=1.9e+02 Score=24.19 Aligned_cols=58 Identities=14% Similarity=0.020 Sum_probs=40.6
Q ss_pred chHHHHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCCceEEEEEc--chhhHHHHHHHHHHcC
Q 002371 174 NGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHG--YSRTGLMVFDVAQRLG 242 (930)
Q Consensus 174 ~~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~--~~~~~~~~~~~a~~~g 242 (930)
.....+...+++.|.++.. .. +....+..++...||+|++.. ...++..++++.++..
T Consensus 13 ~~~~~l~~~l~~~g~~v~~---~~--------~~~~al~~l~~~~~dlvllD~~~p~~~g~~~~~~l~~~~ 72 (122)
T 3gl9_A 13 VLRKIVSFNLKKEGYEVIE---AE--------NGQIALEKLSEFTPDLIVLXIMMPVMDGFTVLKKLQEKE 72 (122)
T ss_dssp HHHHHHHHHHHHTTCEEEE---ES--------SHHHHHHHHTTBCCSEEEECSCCSSSCHHHHHHHHHTST
T ss_pred HHHHHHHHHHHHCCcEEEE---eC--------CHHHHHHHHHhcCCCEEEEeccCCCCcHHHHHHHHHhcc
Confidence 4567788888888887652 11 233456677778899999853 4457888888888754
No 367
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=36.68 E-value=1.6e+02 Score=28.29 Aligned_cols=87 Identities=13% Similarity=0.037 Sum_probs=58.1
Q ss_pred cEEEEEEecCCcCcchHHHHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCCceEEEE--Ecch----hhHHH
Q 002371 160 GEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVV--HGYS----RTGLM 233 (930)
Q Consensus 160 ~~vaii~~d~~~g~~~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~--~~~~----~~~~~ 233 (930)
.+|.+-....+.-.-+...+...|+..|.+|.+- -.. ......+..+++.+||+|.+ .+.. .....
T Consensus 93 ~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~L---G~~-----vp~e~iv~~~~~~~~d~v~l~~S~l~~~~~~~~~~ 164 (215)
T 3ezx_A 93 GLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDL---GVD-----VLNENVVEEAAKHKGEKVLLVGSALMTTSMLGQKD 164 (215)
T ss_dssp CEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEEC---CSS-----CCHHHHHHHHHHTTTSCEEEEEECSSHHHHTHHHH
T ss_pred CeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEc---CCC-----CCHHHHHHHHHHcCCCEEEEEchhcccCcHHHHHH
Confidence 4666666666655667788888999999998752 111 22345567777789999999 5443 34677
Q ss_pred HHHHHHHcCCCCCceEEEEeC
Q 002371 234 VFDVAQRLGMMDSGYVWIATT 254 (930)
Q Consensus 234 ~~~~a~~~g~~~~~~~~i~~~ 254 (930)
++++.++.|+...-.+|+++.
T Consensus 165 ~i~~l~~~~~~~~v~v~vGG~ 185 (215)
T 3ezx_A 165 LMDRLNEEKLRDSVKCMFGGA 185 (215)
T ss_dssp HHHHHHHTTCGGGSEEEEESS
T ss_pred HHHHHHHcCCCCCCEEEEECC
Confidence 788888888643334565543
No 368
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=36.62 E-value=94 Score=26.81 Aligned_cols=67 Identities=13% Similarity=0.093 Sum_probs=44.5
Q ss_pred cEEEEEEecCCcCcchHHHHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCCceEEEEEc--chhhHHHHHHH
Q 002371 160 GEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHG--YSRTGLMVFDV 237 (930)
Q Consensus 160 ~~vaii~~d~~~g~~~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~--~~~~~~~~~~~ 237 (930)
.+|.++ +|+. .....+...+++.|..+.. .. +....+..++...+|+|++.. ...++..++++
T Consensus 7 ~~iLiv-dd~~---~~~~~l~~~l~~~g~~v~~---~~--------~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~ 71 (140)
T 3grc_A 7 PRILIC-EDDP---DIARLLNLMLEKGGFDSDM---VH--------SAAQALEQVARRPYAAMTVDLNLPDQDGVSLIRA 71 (140)
T ss_dssp SEEEEE-CSCH---HHHHHHHHHHHHTTCEEEE---EC--------SHHHHHHHHHHSCCSEEEECSCCSSSCHHHHHHH
T ss_pred CCEEEE-cCCH---HHHHHHHHHHHHCCCeEEE---EC--------CHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHH
Confidence 455444 3332 4677888888888887542 11 234456667778899999964 34678888888
Q ss_pred HHHc
Q 002371 238 AQRL 241 (930)
Q Consensus 238 a~~~ 241 (930)
.++.
T Consensus 72 l~~~ 75 (140)
T 3grc_A 72 LRRD 75 (140)
T ss_dssp HHTS
T ss_pred HHhC
Confidence 8873
No 369
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=36.13 E-value=2.1e+02 Score=24.61 Aligned_cols=72 Identities=13% Similarity=0.130 Sum_probs=45.5
Q ss_pred chHHHHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCCceEEEEEcc--hhhHHHHHHHHHHcCCCCCceEEE
Q 002371 174 NGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY--SRTGLMVFDVAQRLGMMDSGYVWI 251 (930)
Q Consensus 174 ~~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~--~~~~~~~~~~a~~~g~~~~~~~~i 251 (930)
.....+...+++.|....... ..+....+..++...+|+|++... ..++..++++.++.+....-.+.+
T Consensus 16 ~~~~~l~~~L~~~~~~~~v~~---------~~~~~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~pii~ 86 (144)
T 3kht_A 16 DDIALIRRVLDRKDIHCQLEF---------VDNGAKALYQVQQAKYDLIILDIGLPIANGFEVMSAVRKPGANQHTPIVI 86 (144)
T ss_dssp HHHHHHHHHHHHTTCCEEEEE---------ESSHHHHHHHHTTCCCSEEEECTTCGGGCHHHHHHHHHSSSTTTTCCEEE
T ss_pred HHHHHHHHHHHhcCCCeeEEE---------ECCHHHHHHHhhcCCCCEEEEeCCCCCCCHHHHHHHHHhcccccCCCEEE
Confidence 467788888988887632211 123345667777788999999643 456788898888743222223444
Q ss_pred EeC
Q 002371 252 ATT 254 (930)
Q Consensus 252 ~~~ 254 (930)
.++
T Consensus 87 ~s~ 89 (144)
T 3kht_A 87 LTD 89 (144)
T ss_dssp EET
T ss_pred EeC
Confidence 443
No 370
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=35.99 E-value=1.9e+02 Score=29.96 Aligned_cols=76 Identities=13% Similarity=0.031 Sum_probs=49.8
Q ss_pred cEEEEEEecCCcCcchHHHHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchhhHHHHHHHHH
Q 002371 160 GEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQ 239 (930)
Q Consensus 160 ~~vaii~~d~~~g~~~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~~~~~~~~~a~ 239 (930)
+++.+|+.-..-.....+.+.+.+++.|+++.....-..+ +......++...++|.||+.+.......+++.+.
T Consensus 30 ~~~~vi~Np~sg~~~~~~~i~~~l~~~g~~~~~~~t~~~~------~~~~~~~~~~~~~~d~vvv~GGDGTl~~v~~~l~ 103 (332)
T 2bon_A 30 PASLLILNGKSTDNLPLREAIMLLREEGMTIHVRVTWEKG------DAARYVEEARKFGVATVIAGGGDGTINEVSTALI 103 (332)
T ss_dssp CCEEEEECSSSTTCHHHHHHHHHHHTTTCCEEEEECCSTT------HHHHHHHHHHHHTCSEEEEEESHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCCchHHHHHHHHHHcCCcEEEEEecCcc------hHHHHHHHHHhcCCCEEEEEccchHHHHHHHHHh
Confidence 6788888533211245677888899999887654433222 3344445554567899998888888888888887
Q ss_pred Hc
Q 002371 240 RL 241 (930)
Q Consensus 240 ~~ 241 (930)
+.
T Consensus 104 ~~ 105 (332)
T 2bon_A 104 QC 105 (332)
T ss_dssp HC
T ss_pred hc
Confidence 53
No 371
>2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A*
Probab=35.72 E-value=3.7e+02 Score=27.38 Aligned_cols=144 Identities=8% Similarity=-0.025 Sum_probs=90.2
Q ss_pred ChHHHHHHHHHHHhcCcEEE--EccCCh-hhHHHHHHhhhcC-CCcEEEeecCCCCCCCCCCCeEEEccCChHHHHHHHH
Q 002371 76 NGFLSIMGALQFMETDTLAI--VGPQSA-VMAHVLSHLANEL-QVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIA 151 (930)
Q Consensus 76 ~~~~a~~~a~~li~~~v~ai--iGp~~S-~~~~av~~~~~~~-~vp~is~~a~~~~ls~~~~~~~fr~~p~~~~~~~ai~ 151 (930)
.+..+...+.++++.++.++ +-+..+ .....+...+.+. ++.+|.+.+. .+-... ....-..|..
T Consensus 80 P~~~~~~~~~e~i~~Gi~~iv~~t~G~~~~~~~~l~~~a~~~~gi~liGPnc~--Gii~p~-~~~~~~~~~~-------- 148 (305)
T 2fp4_A 80 PPPFAAAAINEAIDAEVPLVVCITEGIPQQDMVRVKHRLLRQGKTRLIGPNCP--GVINPG-ECKIGIMPGH-------- 148 (305)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEECCCCCCHHHHHHHHHHHTTCSSCEEECSSSC--EEEETT-TEEEESSCGG--------
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCCChHHHHHHHHHHHhcCCcEEEeCCCC--eEeccc-ccceeecccc--------
Confidence 56677778888888876663 333332 2344788899999 9999875442 121110 0111122211
Q ss_pred HHHHHcCCcEEEEEEecCCcCcchHHHHHHHHHhcCcEEEEEEecCCCCCC-ChhHHHHHHHHHhc-CCceEEEEEcch-
Q 002371 152 EMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSV-TETDVRNELVKVRM-MEARVIVVHGYS- 228 (930)
Q Consensus 152 ~~l~~~~w~~vaii~~d~~~g~~~~~~~~~~l~~~g~~i~~~~~~~~~~~~-~~~d~~~~l~~l~~-~~~~viv~~~~~- 228 (930)
....-+|++|.+... +...+.+.+.+.|+-+.....+-.. . .+.++...|+.+.+ .++++|+++...
T Consensus 149 ----~~~~G~va~vSqSG~----l~~~~~~~~~~~g~G~S~~vs~G~~--~~~~~~~~d~l~~~~~Dp~T~~I~l~~E~~ 218 (305)
T 2fp4_A 149 ----IHKKGRIGIVSRSGT----LTYEAVHQTTQVGLGQSLCVGIGGD--PFNGTDFTDCLEIFLNDPATEGIILIGEIG 218 (305)
T ss_dssp ----GCCEEEEEEEESCSH----HHHHHHHHHHHTTCCEEEEEECCSS--SSCSCCHHHHHHHHHHCTTCCEEEEEEESS
T ss_pred ----CCCCCCEEEEecchH----HHHHHHHHHHhcCCCeeEEeccCCC--cCCCCCHHHHHHHHhcCCCCcEEEEEEecC
Confidence 233457999987654 4455666777888877766555332 2 14677788888765 678999998775
Q ss_pred ----hhHHHHHHHHHH
Q 002371 229 ----RTGLMVFDVAQR 240 (930)
Q Consensus 229 ----~~~~~~~~~a~~ 240 (930)
.++..|++.+++
T Consensus 219 g~~e~~~~~f~~~~~~ 234 (305)
T 2fp4_A 219 GNAEENAAEFLKQHNS 234 (305)
T ss_dssp SSHHHHHHHHHHHHSC
T ss_pred CchhhHHHHHHHHHHH
Confidence 468999988754
No 372
>2nr1_A NR1 M2, M2; receptor, signal, postsynaptic membrane; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=35.64 E-value=9.4 Score=22.90 Aligned_cols=19 Identities=16% Similarity=0.567 Sum_probs=14.7
Q ss_pred cccchhhHHHHHHHhhccc
Q 002371 617 RKQIVTVLWFSFSTMFFAH 635 (930)
Q Consensus 617 ~~~~~~~~~~~~~~l~~~~ 635 (930)
...+..++||+|++++..+
T Consensus 6 ~~~l~aa~wF~WGvllnsg 24 (27)
T 2nr1_A 6 ALTLSSAMWFSWGVLLNSG 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred ceehhhhHHHhhHhheecc
Confidence 3457889999999998653
No 373
>1sg6_A Pentafunctional AROM polypeptide; shikimate pathway, aromatic amino acid biosynthesis, DHQS, O form J, domain movement, cyclase, lyase; HET: NAD; 1.70A {Emericella nidulans} SCOP: e.22.1.1 PDB: 1nr5_A* 1nrx_A* 1nua_A 1nva_A* 1nvb_A* 1nvd_A* 1nve_A* 1nvf_A* 1dqs_A*
Probab=35.39 E-value=1.4e+02 Score=31.83 Aligned_cols=96 Identities=11% Similarity=0.061 Sum_probs=63.3
Q ss_pred HHHcCCcEEEEEEecCCcCcchHHHHHHHHHhc------CcEEEEEEecCCCC-CCChhHHHHHHHHHhcCC--c---eE
Q 002371 154 VSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEI------RCKISYKSALPPDQ-SVTETDVRNELVKVRMME--A---RV 221 (930)
Q Consensus 154 l~~~~w~~vaii~~d~~~g~~~~~~~~~~l~~~------g~~i~~~~~~~~~~-~~~~~d~~~~l~~l~~~~--~---~v 221 (930)
++.++.+++.+|++...+.. ..+.+.+.|++. |+++.. ..++.+. ..+.+.+....+.+++.+ . |+
T Consensus 31 ~~~~~~~k~liVtd~~v~~~-~~~~v~~~L~~~~~~~~~g~~~~~-~~~~~gE~~k~~~~v~~~~~~~~~~~~~~~r~d~ 108 (393)
T 1sg6_A 31 ISDCSSTTYVLVTDTNIGSI-YTPSFEEAFRKRAAEITPSPRLLI-YNRPPGEVSKSRQTKADIEDWMLSQNPPCGRDTV 108 (393)
T ss_dssp HHHSCCSEEEEEEEHHHHHH-HHHHHHHHHHHHHHHSSSCCEEEE-EEECSSGGGSSHHHHHHHHHHHHTSSSCCCTTCE
T ss_pred HHhcCCCeEEEEECCcHHHH-HHHHHHHHHHhhhccccCCceeEE-EEeCCCCCCCCHHHHHHHHHHHHHcCCCCCCCCE
Confidence 46678899999986544332 567777788776 776642 3344431 124567788888888888 7 99
Q ss_pred EEEEcch--hhHHHHHHHHHHcCCCCCceEEEEeC
Q 002371 222 IVVHGYS--RTGLMVFDVAQRLGMMDSGYVWIATT 254 (930)
Q Consensus 222 iv~~~~~--~~~~~~~~~a~~~g~~~~~~~~i~~~ 254 (930)
||..+.+ -|...++......|+ .++-|-|.
T Consensus 109 iIalGGGsv~D~ak~~Aa~~~rgi---p~i~IPTT 140 (393)
T 1sg6_A 109 VIALGGGVIGDLTGFVASTYMRGV---RYVQVPTT 140 (393)
T ss_dssp EEEEESHHHHHHHHHHHHHGGGCC---EEEEEECS
T ss_pred EEEECCcHHHHHHHHHHHHhcCCC---CEEEECCc
Confidence 8876554 677777766555553 56666665
No 374
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=35.25 E-value=1e+02 Score=30.80 Aligned_cols=79 Identities=6% Similarity=-0.058 Sum_probs=53.9
Q ss_pred CCcEEEEEEe--cCCcCcchHHHHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchhhHHHHH
Q 002371 158 GWGEVIAIFN--DDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVF 235 (930)
Q Consensus 158 ~w~~vaii~~--d~~~g~~~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~~~~~~~ 235 (930)
.-++|+++.. +++|.......+.+++++.|..+.... . . .+.......++.+.+.++|.|++....... ..+
T Consensus 7 ~~~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~-~--~--~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~-~~~ 80 (285)
T 3c3k_A 7 KTGMLLVMVSNIANPFCAAVVKGIEKTAEKNGYRILLCN-T--E--SDLARSRSCLTLLSGKMVDGVITMDALSEL-PEL 80 (285)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEE-C--T--TCHHHHHHHTHHHHTTCCSEEEECCCGGGH-HHH
T ss_pred CCCEEEEEeCCCCCchHHHHHHHHHHHHHHcCCEEEEEe-C--C--CCHHHHHHHHHHHHhCCCCEEEEeCCCCCh-HHH
Confidence 3468899886 467777888999999999999876542 1 1 124445567788888899999987543222 345
Q ss_pred HHHHHcCC
Q 002371 236 DVAQRLGM 243 (930)
Q Consensus 236 ~~a~~~g~ 243 (930)
+.+. .|.
T Consensus 81 ~~l~-~~i 87 (285)
T 3c3k_A 81 QNII-GAF 87 (285)
T ss_dssp HHHH-TTS
T ss_pred HHHh-cCC
Confidence 5555 554
No 375
>1jlj_A Gephyrin; globular alpha/beta fold, structural protein; 1.60A {Homo sapiens} SCOP: c.57.1.1 PDB: 1ihc_A
Probab=35.23 E-value=1.1e+02 Score=28.79 Aligned_cols=68 Identities=16% Similarity=0.116 Sum_probs=48.2
Q ss_pred HcCCcEEEEEEecCC-----cCcchHHHHHHHHHh---cCcEEEEEEecCCCCCCChhHHHHHHHHHhc-CCceEEEEEc
Q 002371 156 YFGWGEVIAIFNDDD-----QGRNGVTALGDKLAE---IRCKISYKSALPPDQSVTETDVRNELVKVRM-MEARVIVVHG 226 (930)
Q Consensus 156 ~~~w~~vaii~~d~~-----~g~~~~~~~~~~l~~---~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~-~~~~viv~~~ 226 (930)
-+.--+++||...|+ .-......+.+.+++ .|.++.....++.+ .+++...+.++.+ .++|+|+..+
T Consensus 11 v~~~~rv~IistGdEl~~g~~~D~n~~~L~~~L~~~~~~G~~v~~~~iv~Dd----~~~I~~al~~a~~~~~~DlVIttG 86 (189)
T 1jlj_A 11 HDHQIRVGVLTVSDSCFRNLAEDRSGINLKDLVQDPSLLGGTISAYKIVPDE----IEEIKETLIDWCDEKELNLILTTG 86 (189)
T ss_dssp --CCCEEEEEEECHHHHTTSSCCHHHHHHHHHHHCTTTTCCEEEEEEEECSC----HHHHHHHHHHHHHTSCCSEEEEES
T ss_pred ccCCCEEEEEEECCccCCCcccchHHHHHHHHHhchhcCCcEEEEEEEeCCC----HHHHHHHHHHHhhcCCCCEEEEcC
Confidence 344567888886543 122345678888888 79999887777765 7888888888765 3789999875
Q ss_pred c
Q 002371 227 Y 227 (930)
Q Consensus 227 ~ 227 (930)
.
T Consensus 87 G 87 (189)
T 1jlj_A 87 G 87 (189)
T ss_dssp C
T ss_pred C
Confidence 3
No 376
>3qvl_A Putative hydantoin racemase; isomerase; HET: 5HY; 1.82A {Klebsiella pneumoniae subsp} PDB: 3qvk_A* 3qvj_A
Probab=35.16 E-value=3.3e+02 Score=26.68 Aligned_cols=170 Identities=11% Similarity=0.003 Sum_probs=88.9
Q ss_pred EEEeEEeecCCCcchHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCC-------ChHHHH----HHHHHHHhcCcEEE
Q 002371 27 LNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKF-------NGFLSI----MGALQFMETDTLAI 95 (930)
Q Consensus 27 I~IG~~~~l~~~~G~~~~~a~~lAve~iN~~ggil~g~~l~l~~~D~~~-------~~~~a~----~~a~~li~~~v~ai 95 (930)
.+|.++.|.++ ..+-.++.-+++.+. + +|.++.....+.+. +...+. ..+.++..+++++|
T Consensus 2 mrilvINPnts---~~~T~~i~~~~~~~~--~---p~~~i~~~t~~~gp~~i~~~~d~~~a~~~l~~~~~~l~~~g~d~i 73 (245)
T 3qvl_A 2 VRIQVINPNTS---LAMTETIGAAARAVA--A---PGTEILAVCPRAGVPSIEGHFDEAIAAVGVLEQIRAGREQGVDGH 73 (245)
T ss_dssp EEEEEECSSCC---HHHHHHHHHHHHHHC--C---TTEEEEEECCSSSCSSCCSHHHHHHHHHHHHHHHHHHHHHTCSEE
T ss_pred CEEEEEeCCCC---HHHHHHHHHHHHHhc--C---CCCEEEEEeCCCCchhhcChhHHHHHHHHHHHHHHHHHHCCCCEE
Confidence 47899999876 334455565666553 1 57888887766542 222222 22333344588888
Q ss_pred EccCChhhHHHHHHhhhcCCCcEEEeecCCCCCCCCCCCeEEEccCChHHHHHHHHHHHHHcCCcEEEEEEecCCcCcch
Q 002371 96 VGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNG 175 (930)
Q Consensus 96 iGp~~S~~~~av~~~~~~~~vp~is~~a~~~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~~~w~~vaii~~d~~~g~~~ 175 (930)
+=+-.+..+. ..+-+..++|++.. .++.++.....| ++|+|+..... .
T Consensus 74 viaCnt~~~l--~~lr~~~~iPvigi-------------------------~e~~~~~a~~~~-~rigVlaT~~t----~ 121 (245)
T 3qvl_A 74 VIASFGDPGL--LAARELAQGPVIGI-------------------------AEAAMHMATMVA-TRFSIVTTLPR----T 121 (245)
T ss_dssp EEC-CCCTTH--HHHHHHCSSCEEEH-------------------------HHHHHHHHHHHC-SCEEEEESCGG----G
T ss_pred EEeCCChhHH--HHHHHHcCCCEECc-------------------------cHHHHHHHHHcC-CEEEEEEcchh----H
Confidence 8655554433 44555678998862 122222222234 78999986543 2
Q ss_pred HHHHHHHHHhcCcE--EEEEEecCCCC----CCC---hhHHHHHHHHH-hcCCceEEEEEcch-hhHHHHHH
Q 002371 176 VTALGDKLAEIRCK--ISYKSALPPDQ----SVT---ETDVRNELVKV-RMMEARVIVVHGYS-RTGLMVFD 236 (930)
Q Consensus 176 ~~~~~~~l~~~g~~--i~~~~~~~~~~----~~~---~~d~~~~l~~l-~~~~~~viv~~~~~-~~~~~~~~ 236 (930)
...+.+.+++.|.. +.......... ... ...+.....++ +..++|+||+.|.+ ......++
T Consensus 122 ~~~~~~~l~~~g~~~~~~~v~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~gad~IVLGCTh~p~l~~~i~ 193 (245)
T 3qvl_A 122 LIIARHLLHQYGFHQHCAALHAIDLPVLALEDGSGLAQEKVRERCIRALKEDGSGAIVLGSGGMATLAQQLT 193 (245)
T ss_dssp HHHHHHHHHHHTCGGGEEEEEECCSCGGGGGSSSSHHHHHHHHHHHHHHHHSCCSEEEECCGGGGGGHHHHH
T ss_pred HHHHHHHHHHcCCCCeEEEEeCCCCCHHHHcCCcHHHHHHHHHHHHHHHHhcCCCEEEECCCChHHHHHHHH
Confidence 36666777766643 22211111100 001 12233333333 34789999997655 43333333
No 377
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=34.80 E-value=63 Score=32.97 Aligned_cols=79 Identities=6% Similarity=-0.078 Sum_probs=54.6
Q ss_pred cEEEEEEe--cCCcCcchHHHHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchhh-HHHHHH
Q 002371 160 GEVIAIFN--DDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRT-GLMVFD 236 (930)
Q Consensus 160 ~~vaii~~--d~~~g~~~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~~-~~~~~~ 236 (930)
.+|+++.. +++|.......+.+++++.|..+..... . .+.......++.+.+.++|.||+...... ....++
T Consensus 3 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~l~~~~~---~--~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~ 77 (306)
T 2vk2_A 3 LTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADG---Q--QKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLK 77 (306)
T ss_dssp CEEEEEECCCCSHHHHHHHHHHHHHHHHHTCEEEEEEC---T--TCHHHHHHHHHHHHHHTCSEEEECCSSSSSCHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHHHcCCEEEEeCC---C--CCHHHHHHHHHHHHHcCCCEEEEeCCChhhHHHHHH
Confidence 47888875 3567777888899999999998875421 1 12445556778887788999998765432 245667
Q ss_pred HHHHcCC
Q 002371 237 VAQRLGM 243 (930)
Q Consensus 237 ~a~~~g~ 243 (930)
.+.+.|+
T Consensus 78 ~~~~~~i 84 (306)
T 2vk2_A 78 EAKDAEI 84 (306)
T ss_dssp HHHHTTC
T ss_pred HHHHCCC
Confidence 7777675
No 378
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=34.51 E-value=31 Score=34.97 Aligned_cols=55 Identities=16% Similarity=0.233 Sum_probs=46.6
Q ss_pred ccchhhHHHHHHHhhcccc--CCcccchhHHHHHHHHHHHHHhhhhhhhhhheeeee
Q 002371 618 KQIVTVLWFSFSTMFFAHR--ENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTV 672 (930)
Q Consensus 618 ~~~~~~~~~~~~~l~~~~~--~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~ 672 (930)
-.+.+++||++.++..-|. -.|.+..+|++.+++.++++.+...+.+.+...+..
T Consensus 92 w~~~~a~yf~~~t~tTvGyGd~~P~T~~Gk~f~~~~~l~Gi~~~~~~~~~~~~~l~~ 148 (280)
T 3ukm_A 92 WDFTSALFFASTVLSTTGYGHTVPLSDGGKAFCIIYSVIGIPFTLLFLTAVVQRITV 148 (280)
T ss_dssp SSHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChhcchhheeeeeeccccCCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578999999999987763 389999999999999999999999888888765544
No 379
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=34.25 E-value=65 Score=33.36 Aligned_cols=79 Identities=10% Similarity=-0.035 Sum_probs=54.1
Q ss_pred CcEEEEEEe--cCCcCcchHHHHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchhhHHHHHH
Q 002371 159 WGEVIAIFN--DDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFD 236 (930)
Q Consensus 159 w~~vaii~~--d~~~g~~~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~~~~~~~~ 236 (930)
-+.|+++.. +++|.......+.+++++.|..+.... .. .+.......++.+...+.|.||+....... ..++
T Consensus 60 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~---~~--~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~-~~~~ 133 (332)
T 2hsg_A 60 TTTVGVIIPDISNIFYAELARGIEDIATMYKYNIILSN---SD--QNQDKELHLLNNMLGKQVDGIIFMSGNVTE-EHVE 133 (332)
T ss_dssp CCEEEEEEC--CCSHHHHHHHHHHHHHHHHTCEEEEEE---CC--SHHHHHHHHHHHTSCCSSCCEEECCSSCCH-HHHH
T ss_pred CCEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCEEEEEe---CC--CChHHHHHHHHHHHhCCCcEEEEecCCCCH-HHHH
Confidence 457999885 477888888999999999999877542 11 113344566788888889999887643322 4556
Q ss_pred HHHHcCC
Q 002371 237 VAQRLGM 243 (930)
Q Consensus 237 ~a~~~g~ 243 (930)
.+.+.|+
T Consensus 134 ~l~~~~i 140 (332)
T 2hsg_A 134 ELKKSPV 140 (332)
T ss_dssp HHTTSSS
T ss_pred HHHhCCC
Confidence 6655554
No 380
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=33.80 E-value=1e+02 Score=30.74 Aligned_cols=65 Identities=6% Similarity=-0.115 Sum_probs=47.3
Q ss_pred CcEEEEEEec--CCcCcchHHHHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCCceEEEEEcch
Q 002371 159 WGEVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS 228 (930)
Q Consensus 159 w~~vaii~~d--~~~g~~~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~ 228 (930)
-++|+++..+ ++|.......+.+++++.|.++.... .. .+.......++.+.+.++|.|++....
T Consensus 7 ~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~---~~--~~~~~~~~~~~~l~~~~vdgii~~~~~ 73 (289)
T 1dbq_A 7 TKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGN---AW--NNLEKQRAYLSMMAQKRVDGLLVMCSE 73 (289)
T ss_dssp -CEEEEEESCTTSHHHHHHHHHHHHHHHHHTCEEEEEE---CT--TCHHHHHHHHHHHHHTTCSEEEEECSC
T ss_pred CCEEEEEeCCCCChHHHHHHHHHHHHHHHcCCeEEEEc---CC--CChHHHHHHHHHHHhCCCCEEEEEecc
Confidence 3578888854 66777788999999999999887532 12 224555667888888899999987644
No 381
>2b4l_A Glycine betaine-binding protein; substrate-binding protein, closed liganded, ABC-transporter, compatible solutes, transport protein; 2.00A {Bacillus subtilis} PDB: 2b4m_A* 3chg_D
Probab=33.46 E-value=68 Score=32.33 Aligned_cols=58 Identities=17% Similarity=0.282 Sum_probs=37.9
Q ss_pred CCcceEEEecCcccccccEEeecCcceEEEEeHHHHHHHHHHCCCcccEEEEeCCCCCCCCCHHHHHHHHHcCcccEEEe
Q 002371 460 NGRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVG 539 (930)
Q Consensus 460 ~g~~lrv~v~~~~~~~p~~~~~~~~~~~~G~~~dll~~l~~~ln~~~~~~~~~~~~~~~n~~~~~l~~~l~~g~~D~~~~ 539 (930)
++++++||... |..-. +...++..+.+.+||++++... ++ .-+...|.+|++|+...
T Consensus 163 ~~~~I~ig~~~---w~e~~-----------~~~~v~~~~Le~~Gy~Ve~~~~--------~~-~~~~~al~~G~iD~~~e 219 (268)
T 2b4l_A 163 KGDKINLAYVA---WDSEI-----------ASTNVIGKVLEDLGYEVTLTQV--------EA-GPMWTAIATGSADASLS 219 (268)
T ss_dssp SSCEEEEEECC---CHHHH-----------HHHHHHHHHHHHHTCEEEEEEC--------CT-THHHHHHHHTSSSEEEE
T ss_pred cCcceEEEccC---ccHHH-----------HHHHHHHHHHHHcCCceEEEEC--------Ch-HHHHHHHHCCCCeEEeh
Confidence 46788888873 42111 1234466666778988777653 22 55678899999999866
Q ss_pred c
Q 002371 540 D 540 (930)
Q Consensus 540 ~ 540 (930)
.
T Consensus 220 ~ 220 (268)
T 2b4l_A 220 A 220 (268)
T ss_dssp E
T ss_pred h
Confidence 4
No 382
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=32.99 E-value=54 Score=33.12 Aligned_cols=82 Identities=5% Similarity=-0.036 Sum_probs=53.5
Q ss_pred HcCCcEEEEEEec--C--CcCcchHHHHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchhhH
Q 002371 156 YFGWGEVIAIFND--D--DQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTG 231 (930)
Q Consensus 156 ~~~w~~vaii~~d--~--~~g~~~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~~~ 231 (930)
.-.-+.|+++..+ + +|.......+.+++++.|..+.....-. ........+..+.+.+.|.||+......
T Consensus 5 ~~~s~~Igvv~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~-----~~~~~~~~~~~l~~~~vdgiIi~~~~~~- 78 (288)
T 3gv0_A 5 TGKTNVIALVLSVDEELMGFTSQMVFGITEVLSTTQYHLVVTPHIH-----AKDSMVPIRYILETGSADGVIISKIEPN- 78 (288)
T ss_dssp --CCCEEEEECBCCCCSSCHHHHHHHHHHHHHTTSSCEEEECCBSS-----GGGTTHHHHHHHHHTCCSEEEEESCCTT-
T ss_pred cCCCCEEEEEecCCccccHHHHHHHHHHHHHHHHcCCEEEEecCCc-----chhHHHHHHHHHHcCCccEEEEecCCCC-
Confidence 3345788998875 3 6778888999999999999887532111 1223344555566788999998754322
Q ss_pred HHHHHHHHHcCC
Q 002371 232 LMVFDVAQRLGM 243 (930)
Q Consensus 232 ~~~~~~a~~~g~ 243 (930)
...++.+.+.|+
T Consensus 79 ~~~~~~l~~~~i 90 (288)
T 3gv0_A 79 DPRVRFMTERNM 90 (288)
T ss_dssp CHHHHHHHHTTC
T ss_pred cHHHHHHhhCCC
Confidence 245677777775
No 383
>2vpn_A Periplasmic substrate binding protein; ectoine, hydroxyectoine, trap-transporter, periplasmic binding protein, transport; HET: 4CS; 1.55A {Halomonas elongata} PDB: 2vpo_A* 3gyy_A
Probab=32.93 E-value=35 Score=35.39 Aligned_cols=88 Identities=10% Similarity=0.001 Sum_probs=54.2
Q ss_pred CCCCChHHhhhCCCeEEEEeCchhHHHHHHhcCCCccceEeCCCHHHHHHHHHcCCcEEEEccchhhHHH-HhcCcceEE
Q 002371 677 SPIKGIDTLMTSNDRVGYQVGSFAENYLIEELSIPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLF-LSDHCQFSV 755 (930)
Q Consensus 677 ~~i~sl~dL~~s~~~i~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~-~~~~~~l~~ 755 (930)
.+|++++||. |++|.+..+......+ +.++.. .++. ...|...+|++|.+|+.....+.+.-. +.+-.++..
T Consensus 130 ~pI~s~~Dlk--G~KiR~~~~~~~~~~~-~~lGa~---pv~m-~~~Evy~ALq~G~VDg~~~~~~~~~~~~~~ev~~y~~ 202 (316)
T 2vpn_A 130 EPITSPEDFD--NKKIRTMTNPLLAETY-KAFGAT---PTPL-PWGEVYGGLQTGIIDGQENPIFWIESGGLYEVSPNLT 202 (316)
T ss_dssp SCCCSGGGGT--TCEEEECSCHHHHHHH-HHHTCE---EEEC-CGGGHHHHHHHTSCSEEEEEHHHHHHTTGGGTCCEEE
T ss_pred CCCCChHHhC--CCEEEeCCCHHHHHHH-HHcCCe---eeec-CHHHHHHHHHcCCcceeeCCHHHHHhcCHHHhhhhhe
Confidence 6899999996 9999887665555666 455532 3333 567899999999999998654443211 112234333
Q ss_pred eCCccccCccEEEecCC
Q 002371 756 RGQEFTKSGWGFAFPRD 772 (930)
Q Consensus 756 ~~~~~~~~~~~~~~~k~ 772 (930)
..... .....+++.++
T Consensus 203 ~~~~~-~~~~~~~~n~~ 218 (316)
T 2vpn_A 203 FTSHG-WFTTAMMANQD 218 (316)
T ss_dssp ECCCC-EEEEEEEEEHH
T ss_pred ecccc-ccceEEEEcHH
Confidence 32221 22445666665
No 384
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=32.87 E-value=78 Score=31.89 Aligned_cols=81 Identities=9% Similarity=0.023 Sum_probs=54.3
Q ss_pred cEEEEEEec--CCcCcchHHHHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchh-hHHHHHH
Q 002371 160 GEVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSR-TGLMVFD 236 (930)
Q Consensus 160 ~~vaii~~d--~~~g~~~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~-~~~~~~~ 236 (930)
+.|+++..+ ++|.......+.+++++.|..+....... . .+...-...++.+...+.|.|++..... .....++
T Consensus 2 ~~Igvi~~~~~~~f~~~~~~gi~~~a~~~g~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~vdgiIi~~~~~~~~~~~~~ 78 (288)
T 1gud_A 2 AEYAVVLKTLSNPFWVDMKKGIEDEAKTLGVSVDIFASPS-E--GDFQSQLQLFEDLSNKNYKGIAFAPLSSVNLVMPVA 78 (288)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHHTCCEEEEECSS-T--TCHHHHHHHHHHHHTSSEEEEEECCSSSSTTHHHHH
T ss_pred cEEEEEeCCCCchHHHHHHHHHHHHHHHcCCEEEEeCCCC-C--CCHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHH
Confidence 467888753 66777788899999999998876543111 1 1234445667888888899999865433 2234567
Q ss_pred HHHHcCC
Q 002371 237 VAQRLGM 243 (930)
Q Consensus 237 ~a~~~g~ 243 (930)
++.+.|+
T Consensus 79 ~~~~~~i 85 (288)
T 1gud_A 79 RAWKKGI 85 (288)
T ss_dssp HHHHTTC
T ss_pred HHHHCCC
Confidence 7777664
No 385
>3rhg_A Putative phophotriesterase; hydrolase, amidohydrolase, zinc binding site, enzyme functio initiative, EFI; HET: SO4; 1.53A {Proteus mirabilis}
Probab=32.86 E-value=3.1e+02 Score=28.81 Aligned_cols=154 Identities=12% Similarity=-0.043 Sum_probs=81.5
Q ss_pred CChHHHHHHHHHHHhcCcEEEEccC-C---hhhHHHHHHhhhcCCCcEEEeecCCCCCCCCCCCeEEEccCChHHHHHHH
Q 002371 75 FNGFLSIMGALQFMETDTLAIVGPQ-S---AVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAI 150 (930)
Q Consensus 75 ~~~~~a~~~a~~li~~~v~aiiGp~-~---S~~~~av~~~~~~~~vp~is~~a~~~~ls~~~~~~~fr~~p~~~~~~~ai 150 (930)
.+...++....++.+.||..||++. + ......+..++++.++-++...+.- ....+|..+.. +. +.+
T Consensus 72 ~~~~~~~~el~~~~~aGv~tiV~~~g~~g~~r~~~~l~~la~~~gi~i~~~tG~y---~~~~~P~~~~~--~~----~~L 142 (365)
T 3rhg_A 72 KPIEDVIFELNNFKELGGKTIVDATGSSSIGRDIRKLKQVAELTGINVVASSGLY---IEKFEGKRLAD--DI----DAM 142 (365)
T ss_dssp CCHHHHHHHHHHHHHTTEEEEEECCCSGGGTCCHHHHHHHHHHHCCEEECEECCC---CHHHHGGGGGS--CH----HHH
T ss_pred ccHHHHHHHHHHHHhcCCCeEEEcCCCCCCCCCHHHHHHHHHHHCCcEEEEeCcc---CCCCCchhhcC--CH----HHH
Confidence 3677888888899888999999987 2 3456667788888887665433321 00111433322 22 334
Q ss_pred HHHHHH--------cCCcE--EEEEEecCCcCcchHHHHHHHHH---hc-CcEEEEEEecCCCCCCChhHHHHHHHHHhc
Q 002371 151 AEMVSY--------FGWGE--VIAIFNDDDQGRNGVTALGDKLA---EI-RCKISYKSALPPDQSVTETDVRNELVKVRM 216 (930)
Q Consensus 151 ~~~l~~--------~~w~~--vaii~~d~~~g~~~~~~~~~~l~---~~-g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~ 216 (930)
++++.+ -+.+- |+-+..|......-...|..+++ +. |..|.... +.. .+.....+.-+++
T Consensus 143 ~~~~~~ei~~gi~~t~vkag~IGEiGld~~~t~~q~~~f~aq~~~A~~~~glPV~iH~--~r~----~~a~~e~l~iL~e 216 (365)
T 3rhg_A 143 AKMIDDELNIGIDGTDIRAGMIGEIGVSPFFTDGEKNSLRAAALAQNNNPYASMNIHM--PGW----QRRGDEVLDILLT 216 (365)
T ss_dssp HHHHHHHHHTCSTTSSCCCCEEEEEECCTTCCHHHHHHHHHHHHHHTTCTTCEEEEEC--CTT----SCCHHHHHHHHTT
T ss_pred HHHHHHHHHhccccCCceeEEEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCcEEEEC--CCC----CcCHHHHHHHHHh
Confidence 433321 12332 22344454333333455555554 34 66655442 111 1122334555554
Q ss_pred C-Cc---eEEEEEcchh-hHHHHHHHHHHcCC
Q 002371 217 M-EA---RVIVVHGYSR-TGLMVFDVAQRLGM 243 (930)
Q Consensus 217 ~-~~---~viv~~~~~~-~~~~~~~~a~~~g~ 243 (930)
. +. ++++.|++.. ......+++.++|.
T Consensus 217 ~~~~~~~~vvi~H~~rs~~~~e~a~~~l~~G~ 248 (365)
T 3rhg_A 217 EMGCDPAKISLAHSDPSGKDIDYQCKMLDRGV 248 (365)
T ss_dssp TTCCCGGGEEESCCGGGTTCHHHHHHHHHTTC
T ss_pred ccCCCCCceEEecCCCCCCCHHHHHHHHhCCC
Confidence 4 32 4777798843 34455666667774
No 386
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=32.67 E-value=1.5e+02 Score=25.38 Aligned_cols=65 Identities=6% Similarity=-0.007 Sum_probs=40.9
Q ss_pred cEEEEEEecCCcCcchHHHHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchhhHHHHHHHHH
Q 002371 160 GEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQ 239 (930)
Q Consensus 160 ~~vaii~~d~~~g~~~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~~~~~~~~~a~ 239 (930)
.+|.++ +|+. .....+...+++.|..+.. .. +....+..+....+|+|+ ....++..++++.+
T Consensus 19 ~~iliv-dd~~---~~~~~l~~~L~~~g~~v~~---~~--------~~~~al~~l~~~~~dlvi--~~~~~g~~~~~~l~ 81 (137)
T 2pln_A 19 MRVLLI-EKNS---VLGGEIEKGLNVKGFMADV---TE--------SLEDGEYLMDIRNYDLVM--VSDKNALSFVSRIK 81 (137)
T ss_dssp SEEEEE-CSCH---HHHHHHHHHHHHTTCEEEE---ES--------CHHHHHHHHHHSCCSEEE--ECSTTHHHHHHHHH
T ss_pred CeEEEE-eCCH---HHHHHHHHHHHHcCcEEEE---eC--------CHHHHHHHHHcCCCCEEE--EcCccHHHHHHHHH
Confidence 455444 3332 4667778888888876552 11 223345555667899988 55566778888888
Q ss_pred Hc
Q 002371 240 RL 241 (930)
Q Consensus 240 ~~ 241 (930)
+.
T Consensus 82 ~~ 83 (137)
T 2pln_A 82 EK 83 (137)
T ss_dssp HH
T ss_pred hc
Confidence 75
No 387
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=32.22 E-value=3.4e+02 Score=26.99 Aligned_cols=117 Identities=11% Similarity=0.030 Sum_probs=70.0
Q ss_pred EEEeEEeecC-CCcchHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhc-----CcEEEEccCC
Q 002371 27 LNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMET-----DTLAIVGPQS 100 (930)
Q Consensus 27 I~IG~~~~l~-~~~G~~~~~a~~lAve~iN~~ggil~g~~l~l~~~D~~~~~~~a~~~a~~li~~-----~v~aiiGp~~ 100 (930)
=+||++.... ......-..|++-|+++. |.++.+ .....+...+..++.++++. ++.||+. .+
T Consensus 132 ~~I~~i~~~~~~~~~~~R~~Gf~~al~~~--------g~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~ai~~-~~ 200 (295)
T 3hcw_A 132 DELIFITEKGNFEVSKDRIQGFETVASQF--------NLDYQI--IETSNEREVILNYMQNLHTRLKDPNIKQAIIS-LD 200 (295)
T ss_dssp SEEEEEEESSCCHHHHHHHHHHHHHHHHT--------TCEEEE--EEECSCHHHHHHHHHHHHHHHTCTTSCEEEEE-SS
T ss_pred ccEEEEcCCccchhHHHHHHHHHHHHHHc--------CCCeeE--EeccCCHHHHHHHHHHHHhhcccCCCCcEEEE-CC
Confidence 3677776543 223445567888888763 334442 33345677778888888764 6899997 34
Q ss_pred hhhHHHHHHhhhcCCC--c----EEEeecCCCCCCCCCCCeEEEccCChHHHHHHHHHHHHH
Q 002371 101 AVMAHVLSHLANELQV--P----LLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSY 156 (930)
Q Consensus 101 S~~~~av~~~~~~~~v--p----~is~~a~~~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~ 156 (930)
...+..+...+.+.++ | ++++.... +.....|-+-....+...+++..++++..
T Consensus 201 d~~A~g~~~al~~~g~~vP~di~vig~D~~~--~~~~~~p~lttv~~~~~~~g~~a~~~l~~ 260 (295)
T 3hcw_A 201 AMLHLAILSVLYELNIEIPKDVMTATFNDSY--LTEIASPPQTCIDIKPRMLGQQAGSAILN 260 (295)
T ss_dssp HHHHHHHHHHHHHTTCCTTTTEEEEEECCSH--HHHTSSSCCEEEECCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCceEEEEeCChh--HHhhCCCCeeEEEECHHHHHHHHHHHHHH
Confidence 4456666666666653 4 66654321 22222344555566667777777776543
No 388
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=32.18 E-value=42 Score=33.96 Aligned_cols=81 Identities=6% Similarity=0.026 Sum_probs=48.4
Q ss_pred CCcEEEEEEe--cCCcCcchHHHHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchhhHHHHH
Q 002371 158 GWGEVIAIFN--DDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVF 235 (930)
Q Consensus 158 ~w~~vaii~~--d~~~g~~~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~~~~~~~ 235 (930)
.-++|+++.. +++|.......+.+++++.|.++... +... .+.......++.+...++|.||+...... ...+
T Consensus 7 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~--~~~~--~~~~~~~~~~~~l~~~~vdgiI~~~~~~~-~~~~ 81 (290)
T 3clk_A 7 SSNVIAAVVSSVRTNFAQQILDGIQEEAHKNGYNLIIV--YSGS--ADPEEQKHALLTAIERPVMGILLLSIALT-DDNL 81 (290)
T ss_dssp -CCEEEEECCCCSSSHHHHHHHHHHHHHHTTTCEEEEE--C------------CHHHHHHSSCCSEEEEESCC-----CH
T ss_pred cCCEEEEEeCCCCChHHHHHHHHHHHHHHHcCCeEEEE--eCCC--CCHHHHHHHHHHHHhcCCCEEEEecccCC-HHHH
Confidence 3467888875 46777888899999999999987653 1111 11223345677777889999998765432 2455
Q ss_pred HHHHHcCC
Q 002371 236 DVAQRLGM 243 (930)
Q Consensus 236 ~~a~~~g~ 243 (930)
+.+.+.|+
T Consensus 82 ~~l~~~~i 89 (290)
T 3clk_A 82 QLLQSSDV 89 (290)
T ss_dssp HHHHCC--
T ss_pred HHHHhCCC
Confidence 66666554
No 389
>3mz1_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative, MI center for STR uctural genomics, MCSG; 1.88A {Sinorhizobium meliloti}
Probab=32.14 E-value=38 Score=34.11 Aligned_cols=72 Identities=8% Similarity=-0.090 Sum_probs=42.3
Q ss_pred cceEeCCCHHHHHHHHHcCCcEEEEccchhhHHHHhcCcceEEeCC--ccccCccEEEecCCCcchhHHHHHHHhc
Q 002371 713 SRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSDHCQFSVRGQ--EFTKSGWGFAFPRDSPLAIDMSTAILTL 786 (930)
Q Consensus 713 ~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~k~spl~~~~n~~i~~l 786 (930)
......++.+.....+..|.--+++-+.... ..... ..+..+.. ......++++.+++.+........+..+
T Consensus 214 ~~~~~~~~~~~~~~~v~~g~Gi~~lp~~~~~-~~~~~-~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~l 287 (300)
T 3mz1_A 214 RYTMAANESTTYLAAARAGLGVIQAPLFMVR-EDLRN-GTMVPVLPDWQVEPMPIYLVYPPNRHLSSRLRVFADWV 287 (300)
T ss_dssp CEEEEESSHHHHHHHHHTTCCBEEEEHHHHH-HHHHH-TSEEECCTTCBCCCEEEEEEECTTCCCCHHHHHHHHHH
T ss_pred cceEEECCHHHHHHHHHhCCCEEeccHHHHH-HHHhC-CCeEEeCCCcCCCCccEEEEEcCcccCcHHHHHHHHHH
Confidence 3456678999999999987765665543333 33222 23444432 2334467788888866555555544433
No 390
>4es6_A Uroporphyrinogen-III synthase; heme-biosynthesis, cytoplasmi; 2.22A {Pseudomonas aeruginosa}
Probab=31.74 E-value=32 Score=34.35 Aligned_cols=88 Identities=13% Similarity=0.115 Sum_probs=53.1
Q ss_pred HHHHHHHHHHH-----HcCCcEEEEEEecCCcCcchHHHHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCCc
Q 002371 145 YLMSAIAEMVS-----YFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEA 219 (930)
Q Consensus 145 ~~~~ai~~~l~-----~~~w~~vaii~~d~~~g~~~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~ 219 (930)
..++.+++.+. ...-++|.++..+ ...+.+.+.|++.|.++.....|... ....+.......+...+.
T Consensus 114 ~~~e~L~~~l~~~~~~~~~~~~vL~~rg~-----~~r~~L~~~L~~~G~~v~~~~vY~~~--~~~~~~~~~~~~l~~~~~ 186 (254)
T 4es6_A 114 DDSEALLALPAFQDSLRVHDPKVLIMRGE-----GGREFLAERLRGQGVQVDYLPLYRRR--APDYPAGELLARVRAERL 186 (254)
T ss_dssp CSHHHHHTCHHHHHHTCSSSCEEEEEECS-----SCCCHHHHHHHHTTCEEEEEECEEEE--CCCCCTTHHHHHHHHTTC
T ss_pred CCHHHHHHhHhhcccccCCCCEEEEEcCC-----ccHHHHHHHHHHCCCEEEEEeEEEee--CCCCCHHHHHHHHHhCCC
Confidence 34577777765 3455788777633 34567888999999987765555432 111111223344555677
Q ss_pred eEEEEEcchhhHHHHHHHHHH
Q 002371 220 RVIVVHGYSRTGLMVFDVAQR 240 (930)
Q Consensus 220 ~viv~~~~~~~~~~~~~~a~~ 240 (930)
|+|+ ..++..+..|++.+.+
T Consensus 187 d~v~-ftS~s~v~~~~~~~~~ 206 (254)
T 4es6_A 187 NGLV-VSSGQGLQNLYQLAAA 206 (254)
T ss_dssp CEEE-CCSHHHHHHHHHHHGG
T ss_pred CEEE-EcCHHHHHHHHHHhhH
Confidence 8765 5666777777776643
No 391
>4gd5_A Phosphate ABC transporter, phosphate-binding PROT; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE; 1.70A {Clostridium perfringens}
Probab=31.68 E-value=1.9e+02 Score=28.99 Aligned_cols=49 Identities=12% Similarity=0.081 Sum_probs=33.5
Q ss_pred HHHHHHHHHcCcccEEEecEEEecCccceeeecccccccceEEEEeccC
Q 002371 522 YSELINQITTGVFDAAVGDIAIVTNRTKAVDFTQPYIESGLVVVAPVRK 570 (930)
Q Consensus 522 ~~~l~~~l~~g~~D~~~~~~~~t~~R~~~vdfs~p~~~~~~~~~v~~~~ 570 (930)
-.+.+.++.+|.+|++..+-.+..+..+.---..|+..+++++++++..
T Consensus 74 Sg~g~~~~~~G~~di~~as~~~~~~e~~~~~~~~~ia~d~~~vivn~~n 122 (279)
T 4gd5_A 74 SSAGIKNAMEGVSEIGMASRDLKGEEKQAGLKEVEIAYDGIALITHKNN 122 (279)
T ss_dssp HHHHHHHHHHTSSSEEEESSCCCHHHHTTCCEEEEEEEEEEEEEEETTC
T ss_pred cHHHHHHHHcCCCcEEEecchhhhhHhhcCceEEEEEeeceeeeeccCC
Confidence 5677889999999998876555443222212235777888899888665
No 392
>2qip_A Protein of unknown function VPA0982; APC85975, vibrio parahaemolyticus RIMD 2210633, STR genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus}
Probab=31.54 E-value=2.2e+02 Score=25.97 Aligned_cols=95 Identities=6% Similarity=-0.037 Sum_probs=56.9
Q ss_pred HHHHHHHHHcCCcEEEEEEecCCcCcchHHHHHHHHHhcCcEEEEEEec--CCCCCCChhHHHHHHHHHh-cCCceEEEE
Q 002371 148 SAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSAL--PPDQSVTETDVRNELVKVR-MMEARVIVV 224 (930)
Q Consensus 148 ~ai~~~l~~~~w~~vaii~~d~~~g~~~~~~~~~~l~~~g~~i~~~~~~--~~~~~~~~~d~~~~l~~l~-~~~~~viv~ 224 (930)
..+.+.+...|--..+..|. +..+......+.++|...|+++...... +.+..-+..|..-.+.-+. ....|.+++
T Consensus 36 ~~l~~~~~~~g~l~~~~~Y~-~~~~~~~~~~~~~~L~~~g~~v~~~p~~~~~~~~~k~~~Dv~laiD~~~~a~~~d~~vL 114 (165)
T 2qip_A 36 NQFWYVATQEKEVVSAKAYA-IASNDPKQRQFHHILRGVGFEVMLKPYIQRRDGSAKGDWDVGITLDAIEIAPDVDRVIL 114 (165)
T ss_dssp HHHHHHHTTTEEEEEEEEEE-CCCCCHHHHHHHHHHHHHTCEEEECCCCCCSSCCCSCCCHHHHHHHHHHHGGGCSEEEE
T ss_pred HHHHHHHhcCCEEEEEEEEE-ccCCchhHHHHHHHHHHCCcEEEEEeeeeccCCccCCCccHHHHHHHHHhhccCCEEEE
Confidence 34555555544333444553 2223355678889999999998753221 1111123445433333332 246799999
Q ss_pred EcchhhHHHHHHHHHHc-CC
Q 002371 225 HGYSRTGLMVFDVAQRL-GM 243 (930)
Q Consensus 225 ~~~~~~~~~~~~~a~~~-g~ 243 (930)
.+...+....++.+++. |.
T Consensus 115 vSgD~DF~plv~~lr~~~G~ 134 (165)
T 2qip_A 115 VSGDGDFSLLVERIQQRYNK 134 (165)
T ss_dssp ECCCGGGHHHHHHHHHHHCC
T ss_pred EECChhHHHHHHHHHHHcCc
Confidence 98888999999999995 84
No 393
>1uuy_A CNX1, molybdopterin biosynthesis CNX1; chelatase, molybdenum cofactor biosynthesis; HET: MTE AMP; 1.45A {Arabidopsis thaliana} SCOP: c.57.1.1 PDB: 1o8q_A 1o8n_A 1o8o_A 1uux_A* 1eav_A
Probab=31.25 E-value=63 Score=29.84 Aligned_cols=64 Identities=16% Similarity=0.129 Sum_probs=44.4
Q ss_pred cEEEEEEecCCc--Cc---chHHHHHHHHHhc-----CcEEEEEEecCCCCCCChhHHHHHHHHHhc-CCceEEEEEcc
Q 002371 160 GEVIAIFNDDDQ--GR---NGVTALGDKLAEI-----RCKISYKSALPPDQSVTETDVRNELVKVRM-MEARVIVVHGY 227 (930)
Q Consensus 160 ~~vaii~~d~~~--g~---~~~~~~~~~l~~~-----g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~-~~~~viv~~~~ 227 (930)
-+|+||...|+- |+ .....+.+.+++. |.++.....++.+ .+.+...+.+..+ .++|+|+..+.
T Consensus 6 ~rv~IistGde~~~G~~~d~n~~~l~~~l~~~~~~~~G~~v~~~~iv~Dd----~~~i~~~l~~~~~~~~~DlVittGG 80 (167)
T 1uuy_A 6 YKVAILTVSDTVSAGAGPDRSGPRAVSVVDSSSEKLGGAKVVATAVVPDE----VERIKDILQKWSDVDEMDLILTLGG 80 (167)
T ss_dssp EEEEEEEECHHHHTTSSCCSHHHHHHHHHHHTTTTTTSEEEEEEEEECSC----HHHHHHHHHHHHHTSCCSEEEEESC
T ss_pred cEEEEEEECCcccCCCCccCcHHHHHHHHHhccccCCCcEEeEEEEcCCC----HHHHHHHHHHHHhcCCCCEEEECCC
Confidence 477888754432 11 1234667777777 9998887777755 7888888888765 57999998753
No 394
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=31.12 E-value=2.4e+02 Score=23.82 Aligned_cols=58 Identities=9% Similarity=-0.022 Sum_probs=39.2
Q ss_pred chHHHHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCC-ceEEEEEc--chhhHHHHHHHHHHcC
Q 002371 174 NGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMME-ARVIVVHG--YSRTGLMVFDVAQRLG 242 (930)
Q Consensus 174 ~~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~-~~viv~~~--~~~~~~~~~~~a~~~g 242 (930)
.....+.+.+++.|.++... . +....+..+.... +|+|++.. ...++..++++.++.+
T Consensus 18 ~~~~~l~~~L~~~g~~v~~~---~--------~~~~a~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~ 78 (136)
T 3hdv_A 18 VNREALILYLKSRGIDAVGA---D--------GAEEARLYLHYQKRIGLMITDLRMQPESGLDLIRTIRASE 78 (136)
T ss_dssp HHHHHHHHHHHHTTCCEEEE---S--------SHHHHHHHHHHCTTEEEEEECSCCSSSCHHHHHHHHHTST
T ss_pred HHHHHHHHHHHHcCceEEEe---C--------CHHHHHHHHHhCCCCcEEEEeccCCCCCHHHHHHHHHhcC
Confidence 46677888888888876532 1 2233445555555 89999864 3457888999998864
No 395
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=30.27 E-value=89 Score=28.73 Aligned_cols=62 Identities=16% Similarity=0.122 Sum_probs=43.4
Q ss_pred cEEEEEEecCCc--C---cchHHHHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCCceEEEEEc
Q 002371 160 GEVIAIFNDDDQ--G---RNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHG 226 (930)
Q Consensus 160 ~~vaii~~d~~~--g---~~~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~ 226 (930)
.+|+||...|+- | ......+.+.+++.|.++.....++ .+ +.+...+.+..+.++|+|+..+
T Consensus 8 ~rv~ii~tGdEl~~G~i~Dsn~~~l~~~l~~~G~~v~~~~iv~----Dd-~~i~~al~~a~~~~~DlVittG 74 (164)
T 3pzy_A 8 RSARVIIASTRASSGEYEDRCGPIITEWLAQQGFSSAQPEVVA----DG-SPVGEALRKAIDDDVDVILTSG 74 (164)
T ss_dssp CEEEEEEECHHHHC----CCHHHHHHHHHHHTTCEECCCEEEC----SS-HHHHHHHHHHHHTTCSEEEEES
T ss_pred CEEEEEEECCCCCCCceeeHHHHHHHHHHHHCCCEEEEEEEeC----CH-HHHHHHHHHHHhCCCCEEEECC
Confidence 478888765432 2 3345788899999999887655554 24 6777778777656799999874
No 396
>1di6_A MOGA, molybdenum cofactor biosynthetic enzyme; MOCO, MOCO biosynthesis, gephyrin function; 1.45A {Escherichia coli} SCOP: c.57.1.1 PDB: 1di7_A
Probab=30.21 E-value=1.2e+02 Score=28.71 Aligned_cols=64 Identities=13% Similarity=0.153 Sum_probs=43.6
Q ss_pred cEEEEEEecCCcC-----cchHHHHHHHHHhcCcE--EEEEEecCCCCCCChhHHHHHHHHHhcC-CceEEEEEcc
Q 002371 160 GEVIAIFNDDDQG-----RNGVTALGDKLAEIRCK--ISYKSALPPDQSVTETDVRNELVKVRMM-EARVIVVHGY 227 (930)
Q Consensus 160 ~~vaii~~d~~~g-----~~~~~~~~~~l~~~g~~--i~~~~~~~~~~~~~~~d~~~~l~~l~~~-~~~viv~~~~ 227 (930)
-+++||...|+-. ......+.+.+++.|.+ +.....++.+ .+.+...|.++.+. ++|+|+..+.
T Consensus 4 ~rv~IIttGdEl~~G~i~D~n~~~L~~~L~~~G~~~~v~~~~iV~Dd----~~~I~~al~~a~~~~~~DlVitTGG 75 (195)
T 1di6_A 4 LRIGLVSISDRASSGVYQDKGIPALEEWLTSALTTPFELETRLIPDE----QAIIEQTLCELVDEMSCHLVLTTGG 75 (195)
T ss_dssp EEEEEEEEECC-------CCHHHHHHHHHHHHBCSCEEEEEEEEESC----HHHHHHHHHHHHHTSCCSEEEEESC
T ss_pred CEEEEEEECCCCCCCeEEchHHHHHHHHHHHcCCCCceEEEEEeCCC----HHHHHHHHHHHHhcCCCCEEEECCC
Confidence 4677877655432 22456788889999887 5555556654 77888888887764 7899998753
No 397
>3sds_A Ornithine carbamoyltransferase, mitochondrial; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.80A {Coccidioides immitis}
Probab=30.18 E-value=4.9e+02 Score=27.12 Aligned_cols=132 Identities=17% Similarity=0.213 Sum_probs=78.6
Q ss_pred EEEeEEeecCCCcchHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhc--CcEEEEccCChhhH
Q 002371 27 LNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMET--DTLAIVGPQSAVMA 104 (930)
Q Consensus 27 I~IG~~~~l~~~~G~~~~~a~~lAve~iN~~ggil~g~~l~l~~~D~~~~~~~a~~~a~~li~~--~v~aiiGp~~S~~~ 104 (930)
-.|+.+|--.+ ..-+.+++.|+.++ +|..+.+-..|++-.-.+.+.-+.+-++. .+.++=.+...
T Consensus 67 k~va~lF~e~S---TRTR~SFE~A~~~L-------Gg~~i~l~~~~s~l~kgEsl~DTarvLs~~~D~IviR~~~~~--- 133 (353)
T 3sds_A 67 KTVAMMFSKRS---TRTRVSTEGAVVKM-------GGHPMFLGKDDIQLGVNESLYDTSVVISSMVSCIVARVGPHS--- 133 (353)
T ss_dssp CEEEEEESSCC---HHHHHHHHHHHHHT-------TCEEEEECTTTC--CCSSCHHHHHHHHHTSCSEEEEECSSHH---
T ss_pred CEEEEEecCCc---hhHHHHHHHHHHHc-------CCeEEecCCccccccCCccHHHHHHHHHHhcCEEEEEeCChH---
Confidence 46888887665 46788999999995 45555443334332222344444455555 34433344322
Q ss_pred HHHHHhhhcCCCcEEEeecCCCCCCCCCCCeEEEccCChHHHHHHHHHH---HHHcCC----------------cEEEEE
Q 002371 105 HVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEM---VSYFGW----------------GEVIAI 165 (930)
Q Consensus 105 ~av~~~~~~~~vp~is~~a~~~~ls~~~~~~~fr~~p~~~~~~~ai~~~---l~~~~w----------------~~vaii 165 (930)
.+..+++..+||+|.-+ ++ ...| .++++++ .+++|. .+|+++
T Consensus 134 -~~~~lA~~s~vPVINag-~d-----~~HP------------tQaLaDl~TI~E~~G~~~~~~~~~~~~~~l~glkva~v 194 (353)
T 3sds_A 134 -DIANLAKHSSVPVINAL-CD-----TFHP------------LQAIADFLTIHESFASQSATHGTHPSSLGLEGLKIAWV 194 (353)
T ss_dssp -HHHHHHHHCSSCEEEEE-CS-----SCCH------------HHHHHHHHHHHHHTC--------CTTCCSCTTCEEEEE
T ss_pred -HHHHHHhhCCCCEEECC-CC-----CCCc------------HHHHHHHHHHHHHhCCCcccccccccccccCCCEEEEE
Confidence 34566777899999743 22 1222 3566665 345553 467766
Q ss_pred EecCCcCcchHHHHHHHHHhcCcEEEEEE
Q 002371 166 FNDDDQGRNGVTALGDKLAEIRCKISYKS 194 (930)
Q Consensus 166 ~~d~~~g~~~~~~~~~~l~~~g~~i~~~~ 194 (930)
. | +...+..+...+...|.++....
T Consensus 195 G--D--~~nva~Sl~~~l~~lG~~v~~~~ 219 (353)
T 3sds_A 195 G--D--ANNVLFDLAIAATKMGVNVAVAT 219 (353)
T ss_dssp S--C--CCHHHHHHHHHHHHTTCEEEEEC
T ss_pred C--C--CchHHHHHHHHHHHcCCEEEEEC
Confidence 4 2 24588889999999999887654
No 398
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=30.11 E-value=1.5e+02 Score=29.80 Aligned_cols=86 Identities=8% Similarity=-0.108 Sum_probs=55.6
Q ss_pred HHHHHHcCCcEEEEEEec--CCcCc-chHHHHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCCceEEEEEcc
Q 002371 151 AEMVSYFGWGEVIAIFND--DDQGR-NGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY 227 (930)
Q Consensus 151 ~~~l~~~~w~~vaii~~d--~~~g~-~~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~ 227 (930)
|+-++...-+.|+++..+ ++|-. .....+.+++++.|..+..... . .+.......++.+.+.+.|.||+...
T Consensus 5 Ar~L~~~~s~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~----~~~~~~~~~~~~l~~~~vdGiIi~~~ 79 (301)
T 3miz_A 5 ARLIRSSRSNTFGIITDYVSTTPYSVDIVRGIQDWANANGKTILIANT-G----GSSEREVEIWKMFQSHRIDGVLYVTM 79 (301)
T ss_dssp -------CCCEEEEEESSTTTCCSCHHHHHHHHHHHHHTTCEEEEEEC-T----TCHHHHHHHHHHHHHTTCSEEEEEEE
T ss_pred HHHHhhCCCCEEEEEeCCCcCcccHHHHHHHHHHHHHHCCCEEEEEeC-C----CChHHHHHHHHHHHhCCCCEEEEecC
Confidence 344555556789999865 46667 8999999999999999875432 1 22455667788888899999998765
Q ss_pred hhhHHHHHHHHHHcCC
Q 002371 228 SRTGLMVFDVAQRLGM 243 (930)
Q Consensus 228 ~~~~~~~~~~a~~~g~ 243 (930)
..+. .+..+.+.|+
T Consensus 80 ~~~~--~~~~~~~~~i 93 (301)
T 3miz_A 80 YRRI--VDPESGDVSI 93 (301)
T ss_dssp EEEE--CCCCCTTCCC
T ss_pred CccH--HHHHHHhCCC
Confidence 4332 3444444443
No 399
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=29.77 E-value=49 Score=33.60 Aligned_cols=80 Identities=9% Similarity=-0.051 Sum_probs=55.8
Q ss_pred cEEEEEEec--CCcCcchHHHHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchhh-HHHHHH
Q 002371 160 GEVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRT-GLMVFD 236 (930)
Q Consensus 160 ~~vaii~~d--~~~g~~~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~~-~~~~~~ 236 (930)
++|+++..+ ++|.......+.+++++.|.++.....-.. .+.......++.+.+.++|.||+...... ....++
T Consensus 6 ~~Igvi~~~~~~~~~~~~~~g~~~~a~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~~~~~~ 82 (304)
T 3o1i_D 6 EKICAIYPHLKDSYWLSVNYGMVSEAEKQGVNLRVLEAGGY---PNKSRQEQQLALCTQWGANAIILGTVDPHAYEHNLK 82 (304)
T ss_dssp CEEEEEESCSCSHHHHHHHHHHHHHHHHHTCEEEEEECSST---TCHHHHHHHHHHHHHHTCSEEEECCSSTTSSTTTHH
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCeEEEEcCCCC---CCHHHHHHHHHHHHHcCCCEEEEeCCChhHHHHHHH
Confidence 578888864 667778889999999999998876432211 13455667788888889999998754433 234566
Q ss_pred HHHHcCC
Q 002371 237 VAQRLGM 243 (930)
Q Consensus 237 ~a~~~g~ 243 (930)
++. .|+
T Consensus 83 ~~~-~~i 88 (304)
T 3o1i_D 83 SWV-GNT 88 (304)
T ss_dssp HHT-TTS
T ss_pred HHc-CCC
Confidence 666 664
No 400
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=29.73 E-value=2.6e+02 Score=23.78 Aligned_cols=56 Identities=7% Similarity=-0.002 Sum_probs=41.1
Q ss_pred chHHHHHHHHHh-cCcEEEEEEecCCCCCCChhHHHHHHHHHhc-CCceEEEEEcc---hhhHHHHHHHHHH
Q 002371 174 NGVTALGDKLAE-IRCKISYKSALPPDQSVTETDVRNELVKVRM-MEARVIVVHGY---SRTGLMVFDVAQR 240 (930)
Q Consensus 174 ~~~~~~~~~l~~-~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~-~~~~viv~~~~---~~~~~~~~~~a~~ 240 (930)
.....+...+++ .|.++... .+....+..++. ..+|+|++... ..++..++++.++
T Consensus 15 ~~~~~l~~~L~~~~~~~v~~~-----------~~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~~~~~l~~ 75 (140)
T 3lua_A 15 YEREKTKIIFDNIGEYDFIEV-----------ENLKKFYSIFKDLDSITLIIMDIAFPVEKEGLEVLSAIRN 75 (140)
T ss_dssp HHHHHHHHHHHHHCCCEEEEE-----------CSHHHHHTTTTTCCCCSEEEECSCSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCccEEEE-----------CCHHHHHHHHhcCCCCcEEEEeCCCCCCCcHHHHHHHHHh
Confidence 466778888888 78876621 233456777777 88999999654 5578888999888
No 401
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=29.69 E-value=65 Score=32.43 Aligned_cols=78 Identities=4% Similarity=-0.088 Sum_probs=51.4
Q ss_pred cEEEEEEec------CCcCcchHHHHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchhhHHH
Q 002371 160 GEVIAIFND------DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLM 233 (930)
Q Consensus 160 ~~vaii~~d------~~~g~~~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~~~~~ 233 (930)
+.|+++..+ ++|.......+.+++++.|.++... ... .+...-...++.+.+.+.|.||+....... .
T Consensus 5 ~~Ig~i~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~---~~~--~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~-~ 78 (287)
T 3bbl_A 5 FMIGYSWTQTEPGQVNHILDQFLSSMVREAGAVNYFVLPF---PFS--EDRSQIDIYRDLIRSGNVDGFVLSSINYND-P 78 (287)
T ss_dssp CEEEECCCCCCTTCSCCTHHHHHHHHHHHHHHTTCEEEEC---CCC--SSTTCCHHHHHHHHTTCCSEEEECSCCTTC-H
T ss_pred eEEEEEecccccccCChhHHHHHHHHHHHHHHcCCEEEEE---eCC--CchHHHHHHHHHHHcCCCCEEEEeecCCCc-H
Confidence 467777643 4677778889999999999987652 211 112233456778888899999987543222 4
Q ss_pred HHHHHHHcCC
Q 002371 234 VFDVAQRLGM 243 (930)
Q Consensus 234 ~~~~a~~~g~ 243 (930)
.++.+.+.|.
T Consensus 79 ~~~~l~~~~i 88 (287)
T 3bbl_A 79 RVQFLLKQKF 88 (287)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHhcCC
Confidence 5666766664
No 402
>3apt_A Methylenetetrahydrofolate reductase; TIM barrel, oxidoreductase, flavin; HET: FAD; 1.85A {Thermus thermophilus} PDB: 3apy_A* 1v93_A*
Probab=29.49 E-value=4.7e+02 Score=26.67 Aligned_cols=149 Identities=13% Similarity=0.096 Sum_probs=84.7
Q ss_pred HHHHHHHHhcCcEEEE---ccCCh--hhHHHHHHhhhcCCCcEEEeecCCCCCCCCCCCeEEEccCChHHHHHHHHHHHH
Q 002371 81 IMGALQFMETDTLAIV---GPQSA--VMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVS 155 (930)
Q Consensus 81 ~~~a~~li~~~v~aii---Gp~~S--~~~~av~~~~~~~~vp~is~~a~~~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~ 155 (930)
...+.+|..-++.+|- |+..| ..+..++....+.+++.|.. +...-.+....+..+.-+.
T Consensus 32 ~~~~~~L~~~~pd~vsVT~~~~g~~r~~t~~~a~~i~~~g~~~i~H---------------ltc~~~~~~~l~~~L~~~~ 96 (310)
T 3apt_A 32 FRTLEELKAFRPAFVSITYGAMGSTRERSVAWAQRIQSLGLNPLAH---------------LTVAGQSRKEVAEVLHRFV 96 (310)
T ss_dssp HHHHHHHGGGCCSEEEECCCSTTCSHHHHHHHHHHHHHTTCCBCEE---------------EECTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCEEEEecCCCCCcchhHHHHHHHHHHhCCCeEEE---------------eecCCCCHHHHHHHHHHHH
Confidence 3444445443555554 44443 44555555555777655532 1111123344555555567
Q ss_pred HcCCcEEEEEEecCCcC----------cchHHHHHHHHHhc-C--cEEEEEEecCCCC---CCChhHHHHHHHHHhcCCc
Q 002371 156 YFGWGEVIAIFNDDDQG----------RNGVTALGDKLAEI-R--CKISYKSALPPDQ---SVTETDVRNELVKVRMMEA 219 (930)
Q Consensus 156 ~~~w~~vaii~~d~~~g----------~~~~~~~~~~l~~~-g--~~i~~~~~~~~~~---~~~~~d~~~~l~~l~~~~~ 219 (930)
..|.+.|.++.-|.+-+ -.....+.+.+++. | .+|. ...+|.+. .+...|+.....|+. +++
T Consensus 97 ~~GI~niLaLrGD~p~~~g~~~~~~~~f~~a~~Lv~~ir~~~g~~f~ig-vA~yPE~Hp~~~~~~~d~~~Lk~Kv~-aGA 174 (310)
T 3apt_A 97 ESGVENLLALRGDPPRGERVFRPHPEGFRYAAELVALIRERYGDRVSVG-GAAYPEGHPESESLEADLRHFKAKVE-AGL 174 (310)
T ss_dssp HTTCCEEEEECCCCSTTCCSCCCCTTSCSSHHHHHHHHHHHHGGGSEEE-EEECTTCCTTSSCHHHHHHHHHHHHH-HHC
T ss_pred HCCCCEEEEEcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHhCCCCeEEE-EEeCCCcCCCCCCHHHHHHHHHHHHH-cCC
Confidence 89999999998764322 12355555555555 5 4554 35666431 111234555555554 678
Q ss_pred eEEEE--EcchhhHHHHHHHHHHcCCCCC
Q 002371 220 RVIVV--HGYSRTGLMVFDVAQRLGMMDS 246 (930)
Q Consensus 220 ~viv~--~~~~~~~~~~~~~a~~~g~~~~ 246 (930)
|.++. +.+.+....++..+++.|...+
T Consensus 175 df~iTQ~ffD~~~~~~f~~~~r~~Gi~vP 203 (310)
T 3apt_A 175 DFAITQLFFNNAHYFGFLERARRAGIGIP 203 (310)
T ss_dssp SEEEECCCSCHHHHHHHHHHHHHTTCCSC
T ss_pred CEEEecccCCHHHHHHHHHHHHHcCCCCe
Confidence 98887 3455778889999999997644
No 403
>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1
Probab=28.74 E-value=1.7e+02 Score=31.95 Aligned_cols=145 Identities=12% Similarity=0.021 Sum_probs=93.2
Q ss_pred CChHHHHHHHHHHHhcCcEEEE--ccCCh--h-----hHHHHHHhhhcCCCcEEEeecCCCCCCCCCCCeEEEccCChHH
Q 002371 75 FNGFLSIMGALQFMETDTLAIV--GPQSA--V-----MAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLY 145 (930)
Q Consensus 75 ~~~~~a~~~a~~li~~~v~aii--Gp~~S--~-----~~~av~~~~~~~~vp~is~~a~~~~ls~~~~~~~fr~~p~~~~ 145 (930)
-.+..+...+.++++.++.+++ -...+ + ....+...+.++++.+|.+.+. .+-+.....-....|..
T Consensus 72 vp~~~~~~~v~e~~~~Gi~~vv~~s~G~~e~g~~g~~~~~~l~~~a~~~g~~viGPnc~--Gv~~~~~~~~~~~~~~~-- 147 (457)
T 2csu_A 72 VPKRFVKDTLIQCGEKGVKGVVIITAGFGETGEEGKREEKELVEIAHKYGMRIIGPNCV--GIMNTHVDLNATFITVA-- 147 (457)
T ss_dssp SCHHHHHHHHHHHHHHTCCEEEECCCSSTTSCHHHHHHHHHHHHHHHHHTCEEECSSCC--EEEEGGGTEEEESSCCC--
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEecCCCCccccccHHHHHHHHHHHHHcCCEEEcCCcc--eEEccCCCceeeecCCC--
Confidence 3667777888888888766544 21111 1 2566778889999999976553 22211001112222321
Q ss_pred HHHHHHHHHHHcCCcEEEEEEecCCcCcchHHHHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhc-CCceEEEE
Q 002371 146 LMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRM-MEARVIVV 224 (930)
Q Consensus 146 ~~~ai~~~l~~~~w~~vaii~~d~~~g~~~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~-~~~~viv~ 224 (930)
.. -+|++|.+... +...+.+.+.+.|+-+.....+-.. . +.++...|+-+.+ .++++|++
T Consensus 148 ----------~~--G~v~~vsqSG~----~~~~~~~~~~~~g~G~s~~vs~G~~--~-~~~~~d~l~~~~~D~~t~~I~l 208 (457)
T 2csu_A 148 ----------KK--GNVAFISQSGA----LGAGIVYKTIKEDIGFSKFISVGNM--A-DVDFAELMEYLADTEEDKAIAL 208 (457)
T ss_dssp ----------EE--CSEEEEESCHH----HHHHHHHHHHHTTCEESEEEECTTC--C-SSCHHHHHHHHTTCSSCCEEEE
T ss_pred ----------CC--CCEEEEeCCHH----HHHHHHHHHHhcCCCeeEEEECCCc--C-CCCHHHHHHHHhcCCCCCEEEE
Confidence 11 46899986543 4455667778888887766555433 2 5678888888865 67899999
Q ss_pred Ecch-hhHHHHHHHHHHcC
Q 002371 225 HGYS-RTGLMVFDVAQRLG 242 (930)
Q Consensus 225 ~~~~-~~~~~~~~~a~~~g 242 (930)
+..+ .++..|++.++...
T Consensus 209 ~~E~i~~~~~f~~~a~~~~ 227 (457)
T 2csu_A 209 YIEGVRNGKKFMEVAKRVT 227 (457)
T ss_dssp EESCCSCHHHHHHHHHHHH
T ss_pred EEecCCCHHHHHHHHHHhc
Confidence 9987 77999999998864
No 404
>2pbq_A Molybdenum cofactor biosynthesis MOG; molybdopterin, MPT, structural genomics, NPPSFA, national PR protein structural and functional analyses; 1.70A {Aquifex aeolicus} PDB: 2qq1_A 3mci_A 3mcj_A 3k6a_A* 2f7w_A 2f7y_A 2fuw_A
Probab=28.71 E-value=1.4e+02 Score=27.72 Aligned_cols=63 Identities=14% Similarity=0.155 Sum_probs=43.5
Q ss_pred cEEEEEEecCCc--C---cchHHHHHHHHH---hcCcEEEEEEecCCCCCCChhHHHHHHHHHhcC-CceEEEEEcc
Q 002371 160 GEVIAIFNDDDQ--G---RNGVTALGDKLA---EIRCKISYKSALPPDQSVTETDVRNELVKVRMM-EARVIVVHGY 227 (930)
Q Consensus 160 ~~vaii~~d~~~--g---~~~~~~~~~~l~---~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~-~~~viv~~~~ 227 (930)
-+|+||...|+- | ......+.+.++ +.|+++ ....++.+ .+++...|.+..+. ++|+||..+.
T Consensus 6 ~rv~IistGdE~~~G~i~Dsn~~~l~~~l~~l~~~G~~v-~~~iv~Dd----~~~I~~~l~~~~~~~~~DlVittGG 77 (178)
T 2pbq_A 6 AVIGVVTISDRASKGIYEDISGKAIIDYLKDVIITPFEV-EYRVIPDE----RDLIEKTLIELADEKGCSLILTTGG 77 (178)
T ss_dssp CEEEEEEECHHHHHTSSCCHHHHHHHHHHHHHBCSCCEE-EEEEECSC----HHHHHHHHHHHHHTSCCSEEEEESC
T ss_pred CEEEEEEeCCcCCCCCeecchHHHHHHHHHHHHhCCCEE-EEEEcCCC----HHHHHHHHHHHHhcCCCCEEEECCC
Confidence 377888765431 1 223466777776 889998 55566655 77888888887763 7899998753
No 405
>3hhg_A Transcriptional regulator, LYSR family; transcription factor, structur genomics, oxford protein production facility, OPPF; 3.20A {Neisseria meningitidis serogroup B}
Probab=28.70 E-value=38 Score=34.45 Aligned_cols=81 Identities=11% Similarity=0.055 Sum_probs=48.8
Q ss_pred CcceEEEecCcccccccEEeecCcceEEEEeHHHHHHHHHHCCCcccEEEEeCCCCCCCCCHHHHHHHHHcCcccEEEec
Q 002371 461 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGD 540 (930)
Q Consensus 461 g~~lrv~v~~~~~~~p~~~~~~~~~~~~G~~~dll~~l~~~ln~~~~~~~~~~~~~~~n~~~~~l~~~l~~g~~D~~~~~ 540 (930)
..+|+||+.. .+. ..+...++..+.++.+ .+.+.... .+.+..+.+|++|+++..
T Consensus 92 ~g~l~I~~~~--~~~------------~~~l~~~l~~f~~~~P-~v~i~l~~----------~~~~~~l~~~~~Dl~i~~ 146 (306)
T 3hhg_A 92 QGVLSVDSAM--PMV------------LHLLAPLAAKFNERYP-HIRLSLVS----------SEGYINLIERKVDIALRA 146 (306)
T ss_dssp CEEEEEEBCH--HHH------------HHTHHHHHHHHHHHCT-TEEEEEEC----------CSSSHHHHTTSSSCEEES
T ss_pred CCcEEEEccH--HHH------------HHHHHHHHHHHHHHCC-CeEEEEEe----------ccchhhHhhcCccEEEEe
Confidence 3678998874 111 2345677888888876 35555542 122446789999999864
Q ss_pred EEEecCccceeeecccccccceEEEEeccC
Q 002371 541 IAIVTNRTKAVDFTQPYIESGLVVVAPVRK 570 (930)
Q Consensus 541 ~~~t~~R~~~vdfs~p~~~~~~~~~v~~~~ 570 (930)
.... ...+. ..++....++++++...
T Consensus 147 ~~~~---~~~l~-~~~L~~~~~~~v~~~~~ 172 (306)
T 3hhg_A 147 GELD---DSGLR-ARHLFDSRFRVIASPEY 172 (306)
T ss_dssp CCCC---CSSCE-EEEEEEEEEEEEECHHH
T ss_pred CCCC---CCCeE-EEEeeeeEEEEEECHHH
Confidence 3222 12222 45667777888876543
No 406
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=28.53 E-value=3.1e+02 Score=28.31 Aligned_cols=75 Identities=16% Similarity=0.053 Sum_probs=50.3
Q ss_pred CcEEEEEEecCCcCc----chHHHHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchhhHHHH
Q 002371 159 WGEVIAIFNDDDQGR----NGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMV 234 (930)
Q Consensus 159 w~~vaii~~d~~~g~----~~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~~~~~~ 234 (930)
.+++.+|+.-.. |. ...+.+.+.|++.|+++.....-. ..+......++...++|+|++.+.......+
T Consensus 24 m~~i~vI~NP~s-g~~~~~~~~~~i~~~L~~~g~~~~~~~t~~------~~~a~~~~~~~~~~~~d~vvv~GGDGTv~~v 96 (337)
T 2qv7_A 24 RKRARIIYNPTS-GKEQFKRELPDALIKLEKAGYETSAYATEK------IGDATLEAERAMHENYDVLIAAGGDGTLNEV 96 (337)
T ss_dssp CEEEEEEECTTS-TTSCHHHHHHHHHHHHHHTTEEEEEEECCS------TTHHHHHHHHHTTTTCSEEEEEECHHHHHHH
T ss_pred cceEEEEECCCC-CCCchHHHHHHHHHHHHHcCCeEEEEEecC------cchHHHHHHHHhhcCCCEEEEEcCchHHHHH
Confidence 478888885332 32 345778889999998876543222 2244455566666788999998888777777
Q ss_pred HHHHHH
Q 002371 235 FDVAQR 240 (930)
Q Consensus 235 ~~~a~~ 240 (930)
++.+.+
T Consensus 97 ~~~l~~ 102 (337)
T 2qv7_A 97 VNGIAE 102 (337)
T ss_dssp HHHHTT
T ss_pred HHHHHh
Confidence 777744
No 407
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=28.41 E-value=4.8e+02 Score=26.48 Aligned_cols=119 Identities=11% Similarity=0.028 Sum_probs=72.1
Q ss_pred ceEEEeEEeecC-CCcchHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcC-cEEEEccCChh
Q 002371 25 EVLNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETD-TLAIVGPQSAV 102 (930)
Q Consensus 25 ~~I~IG~~~~l~-~~~G~~~~~a~~lAve~iN~~ggil~g~~l~l~~~D~~~~~~~a~~~a~~li~~~-v~aiiGp~~S~ 102 (930)
+-=+||++.... ......-..|++-|+++. |.+ ++......+...+..++.+++..+ +.||+.. +..
T Consensus 173 G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~--------g~~--~~~~~~~~~~~~~~~~~~~ll~~~~~~ai~~~-nd~ 241 (333)
T 3jvd_A 173 SGMNIAALVGEESLSTTQERMRGISHAASIY--------GAE--VTFHFGHYSVESGEEMAQVVFNNGLPDALIVA-SPR 241 (333)
T ss_dssp SSCEEEEEESCTTSHHHHHHHHHHHHHHHHT--------TCE--EEEEECCSSHHHHHHHHHHHHHTCCCSEEEEC-CHH
T ss_pred CCCeEEEEeCCCCCccHHHHHHHHHHHHHHC--------CCC--EEEecCCCCHHHHHHHHHHHhcCCCCcEEEEC-CHH
Confidence 445688776553 223445577888777763 223 222215567888888899998874 8899974 344
Q ss_pred hHHHHHHhhhcCCC------cEEEeecCCCCCCCCCCCeEEEccCChHHHHHHHHHHHHH
Q 002371 103 MAHVLSHLANELQV------PLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSY 156 (930)
Q Consensus 103 ~~~av~~~~~~~~v------p~is~~a~~~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~ 156 (930)
.+..+...+.+.++ .++++.... +.....|-+-....+...++...++++..
T Consensus 242 ~A~g~~~al~~~G~~vP~disvig~D~~~--~~~~~~p~lttv~~~~~~~g~~Av~~L~~ 299 (333)
T 3jvd_A 242 LMAGVMRAFTRLNVRVPHDVVIGGYDDPE--WYSFVGAGITTFVPPHEEMGKEAVRLLVD 299 (333)
T ss_dssp HHHHHHHHHHHTTCCTTTTCEEEEESCCG--GGGGSTTSCEEEECCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCceEEEEECChH--HHHhcCCCceEEecCHHHHHHHHHHHHHH
Confidence 55556666665543 367664332 33322344555566777778877777543
No 408
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=28.08 E-value=3e+02 Score=23.88 Aligned_cols=70 Identities=14% Similarity=0.112 Sum_probs=43.1
Q ss_pred chHHHHHHHHHhcCc--EEEEEEecCCCCCCChhHHHHHHHHHh---------cCCceEEEEEc--chhhHHHHHHHHHH
Q 002371 174 NGVTALGDKLAEIRC--KISYKSALPPDQSVTETDVRNELVKVR---------MMEARVIVVHG--YSRTGLMVFDVAQR 240 (930)
Q Consensus 174 ~~~~~~~~~l~~~g~--~i~~~~~~~~~~~~~~~d~~~~l~~l~---------~~~~~viv~~~--~~~~~~~~~~~a~~ 240 (930)
.....+.+.+++.|. .+.. .. +....+..++ ...+|+|++.. ...++..++++.++
T Consensus 15 ~~~~~l~~~L~~~g~~~~v~~---~~--------~~~~al~~l~~~~~~~~~~~~~~dliilD~~l~~~~g~~~~~~lr~ 83 (152)
T 3heb_A 15 GHARLIEKNIRRAGVNNEIIA---FT--------DGTSALNYLFGDDKSGRVSAGRAQLVLLDLNLPDMTGIDILKLVKE 83 (152)
T ss_dssp HHHHHHHHHHHHTTCCCCEEE---ES--------SHHHHHHHHHCTTSSSGGGTTCBEEEEECSBCSSSBHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcceEEE---eC--------CHHHHHHHHhccccccccccCCCCEEEEeCCCCCCcHHHHHHHHHh
Confidence 467788888988887 4432 11 2233445553 56799999953 45678889999988
Q ss_pred cCCCCCceEEEEeC
Q 002371 241 LGMMDSGYVWIATT 254 (930)
Q Consensus 241 ~g~~~~~~~~i~~~ 254 (930)
......-.+.+.++
T Consensus 84 ~~~~~~~pii~~t~ 97 (152)
T 3heb_A 84 NPHTRRSPVVILTT 97 (152)
T ss_dssp STTTTTSCEEEEES
T ss_pred cccccCCCEEEEec
Confidence 43222223444444
No 409
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=27.74 E-value=2e+02 Score=29.60 Aligned_cols=70 Identities=6% Similarity=-0.124 Sum_probs=49.9
Q ss_pred HHHcCCcEEEEEEec--CCcCcchHHHHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCCceEEEEEcch
Q 002371 154 VSYFGWGEVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS 228 (930)
Q Consensus 154 l~~~~w~~vaii~~d--~~~g~~~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~ 228 (930)
++.-.-+.|+++..+ ++|.......+.+++++.|..+.... .. .+.......++.+...+.|.||+....
T Consensus 53 l~~~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~---~~--~~~~~~~~~~~~l~~~~vdgiI~~~~~ 124 (340)
T 1qpz_A 53 LKVNHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGN---AW--NNLEKQRAYLSMMAQKRVDGLLVMCSE 124 (340)
T ss_dssp HHHTCCSEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEEE---CT--TCHHHHHHHHHHHHHTTCSEEEECCSC
T ss_pred hccCCCCEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEEe---CC--CCHHHHHHHHHHHHcCCCCEEEEeCCC
Confidence 333445689999864 66777888999999999999887532 11 224555667888888899999986543
No 410
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=27.65 E-value=42 Score=29.20 Aligned_cols=67 Identities=12% Similarity=0.164 Sum_probs=44.6
Q ss_pred EEEecCCcCcchHHHHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCCceEEEEE--cchhhHHHHHHHHHHc
Q 002371 164 AIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVH--GYSRTGLMVFDVAQRL 241 (930)
Q Consensus 164 ii~~d~~~g~~~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~--~~~~~~~~~~~~a~~~ 241 (930)
+|.+|++ .....+...|++.|.+++.. ..+-...+..+++..+|+|++- +...++..++++.++.
T Consensus 12 LiVdD~~---~~~~~l~~~L~~~G~~v~~~----------a~~g~eAl~~~~~~~~DlvllDi~mP~~~G~el~~~lr~~ 78 (123)
T 2lpm_A 12 LVVEDES---MIAMLIEDTLCELGHEVAAT----------ASRMQEALDIARKGQFDIAIIDVNLDGEPSYPVADILAER 78 (123)
T ss_dssp EEESSST---TTSHHHHHHHHHHCCCCCBC----------SCCHHHHHHHHHHCCSSEEEECSSSSSCCSHHHHHHHHHT
T ss_pred EEEeCCH---HHHHHHHHHHHHCCCEEEEE----------ECCHHHHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHHcC
Confidence 3444544 45667778888888775421 1233455677778899999984 4556777888888886
Q ss_pred CC
Q 002371 242 GM 243 (930)
Q Consensus 242 g~ 243 (930)
+.
T Consensus 79 ~i 80 (123)
T 2lpm_A 79 NV 80 (123)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 411
>3rf7_A Iron-containing alcohol dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: NAD EPE; 2.12A {Shewanella denitrificans}
Probab=27.30 E-value=1e+02 Score=32.83 Aligned_cols=84 Identities=11% Similarity=0.084 Sum_probs=56.0
Q ss_pred HHHHHHHHcCC---cEEEEEEecCCcCcchHHHHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCC---ceEE
Q 002371 149 AIAEMVSYFGW---GEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMME---ARVI 222 (930)
Q Consensus 149 ai~~~l~~~~w---~~vaii~~d~~~g~~~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~---~~vi 222 (930)
.+.++++.++. +++.+|....-... .+.+.+++.|+.+..-..+.+. .+.+.+...+..+++.+ +|+|
T Consensus 40 ~l~~~l~~~g~~~~~~~liVtd~~~~~~----~l~~~L~~~g~~~~~f~~v~~~--pt~~~v~~~~~~~~~~~~~~~D~I 113 (375)
T 3rf7_A 40 QLDTVLEQERTDANDFVVFLVDDVHQHK----PLAARVPNKAHDLVIYVNVDDE--PTTVQVDELTAQVKAFNTKLPVSV 113 (375)
T ss_dssp GHHHHHHTTCCSTTCCEEEEEEGGGTTS----HHHHHSCCCTTSEEEEECCSSC--CBHHHHHHHHHHHHHHCSSCCSEE
T ss_pred HHHHHHHHhcccCCCeEEEEECchhhhh----HHHHHHHhcCCeEEEEeCCCCC--CCHHHHHHHHHHHHHhCCCCCCEE
Confidence 36677777763 77878875443322 3667777778776544445555 55778888888888877 9999
Q ss_pred EEEcch--hhHHHHHHHH
Q 002371 223 VVHGYS--RTGLMVFDVA 238 (930)
Q Consensus 223 v~~~~~--~~~~~~~~~a 238 (930)
|-.+.+ -|..+++...
T Consensus 114 IavGGGS~iD~AK~iA~~ 131 (375)
T 3rf7_A 114 VGLGGGSTMDLAKAVSLM 131 (375)
T ss_dssp EEEESHHHHHHHHHHHHH
T ss_pred EEeCCcHHHHHHHHHHHH
Confidence 987655 4556665444
No 412
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=26.84 E-value=1.6e+02 Score=24.85 Aligned_cols=69 Identities=10% Similarity=0.116 Sum_probs=44.3
Q ss_pred CcEEEEEEecCCcCcchHHHHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCCceEEEEEcc--hhhHHHHHH
Q 002371 159 WGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY--SRTGLMVFD 236 (930)
Q Consensus 159 w~~vaii~~d~~~g~~~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~--~~~~~~~~~ 236 (930)
.++|.++- |+. .....+.+.+++.|..+.. .. +....+..++...+|+|++... ..++..+++
T Consensus 7 ~~~ilivd-d~~---~~~~~l~~~L~~~g~~v~~---~~--------~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~ 71 (130)
T 3eod_A 7 GKQILIVE-DEQ---VFRSLLDSWFSSLGATTVL---AA--------DGVDALELLGGFTPDLMICDIAMPRMNGLKLLE 71 (130)
T ss_dssp TCEEEEEC-SCH---HHHHHHHHHHHHTTCEEEE---ES--------CHHHHHHHHTTCCCSEEEECCC-----CHHHHH
T ss_pred CCeEEEEe-CCH---HHHHHHHHHHHhCCceEEE---eC--------CHHHHHHHHhcCCCCEEEEecCCCCCCHHHHHH
Confidence 34655553 332 4567788888888887653 11 2344566777788999999643 346778888
Q ss_pred HHHHcC
Q 002371 237 VAQRLG 242 (930)
Q Consensus 237 ~a~~~g 242 (930)
+.++.+
T Consensus 72 ~l~~~~ 77 (130)
T 3eod_A 72 HIRNRG 77 (130)
T ss_dssp HHHHTT
T ss_pred HHHhcC
Confidence 888755
No 413
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=26.64 E-value=3e+02 Score=23.42 Aligned_cols=58 Identities=9% Similarity=0.049 Sum_probs=40.8
Q ss_pred chHHHHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCCceEEEEEc-chhhHHHHHHHHHHcC
Q 002371 174 NGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHG-YSRTGLMVFDVAQRLG 242 (930)
Q Consensus 174 ~~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~-~~~~~~~~~~~a~~~g 242 (930)
.....+...+++.|.++.. . .+....+..++...+|+|++.. ...++..++++.++..
T Consensus 15 ~~~~~l~~~L~~~g~~v~~---~--------~~~~~a~~~l~~~~~dlvi~d~~~~~~g~~~~~~l~~~~ 73 (142)
T 2qxy_A 15 ITFLAVKNALEKDGFNVIW---A--------KNEQEAFTFLRREKIDLVFVDVFEGEESLNLIRRIREEF 73 (142)
T ss_dssp HHHHHHHHHHGGGTCEEEE---E--------SSHHHHHHHHTTSCCSEEEEECTTTHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCCCEEEE---E--------CCHHHHHHHHhccCCCEEEEeCCCCCcHHHHHHHHHHHC
Confidence 5677888889888887652 1 1234556777778899999976 2346677888888754
No 414
>3hp4_A GDSL-esterase; psychrotrophic, monoethylphosphonate, hydrolase; HET: MIR; 1.35A {Pseudoalteromonas SP} SCOP: c.23.10.0
Probab=26.64 E-value=2.1e+02 Score=25.98 Aligned_cols=69 Identities=13% Similarity=0.119 Sum_probs=41.9
Q ss_pred cEEEEEEecCCcC------cchHHHHHHHHHhcCcEEEEE-EecCCCCCCChhHHHHHHHHHhc-CCceEEEEEcchhhH
Q 002371 160 GEVIAIFNDDDQG------RNGVTALGDKLAEIRCKISYK-SALPPDQSVTETDVRNELVKVRM-MEARVIVVHGYSRTG 231 (930)
Q Consensus 160 ~~vaii~~d~~~g------~~~~~~~~~~l~~~g~~i~~~-~~~~~~~~~~~~d~~~~l~~l~~-~~~~viv~~~~~~~~ 231 (930)
++|.++.+.-..| .+....+.+.+.+.|..+... ..++ + .+..+....+.+... .+||+|++.....|.
T Consensus 3 ~~i~~~GDSit~G~g~~~~~~~~~~l~~~l~~~~~~~~v~n~g~~-G--~~~~~~~~~~~~~~~~~~pd~vvi~~G~ND~ 79 (185)
T 3hp4_A 3 NTILILGDXLSAAYGLQQEEGWVKLLQDKYDAEQSDIVLINASIS-G--ETSGGALRRLDALLEQYEPTHVLIELGANDG 79 (185)
T ss_dssp EEEEEEECTTTTTTTSCGGGSHHHHHHHHHHHTTCCEEEEECCCT-T--CCHHHHHHHHHHHHHHHCCSEEEEECCHHHH
T ss_pred CeEEEECCcccccCCCCCcccHHHHHHHHHHhcCCcEEEEECCcC-C--ccHHHHHHHHHHHHhhcCCCEEEEEeecccC
Confidence 5677777554444 355677888888776554432 2333 3 345555555555433 489999998776654
No 415
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=26.59 E-value=42 Score=34.22 Aligned_cols=59 Identities=7% Similarity=0.068 Sum_probs=41.0
Q ss_pred cccchhhHHHHHHHhhccccC----Ccccc----hhHHHHHHHHHHHHHhhhhhhhhhheeeeeccc
Q 002371 617 RKQIVTVLWFSFSTMFFAHRE----NTVST----LGRVVLIIWLFVVLIITSSYTASLTSILTVQQL 675 (930)
Q Consensus 617 ~~~~~~~~~~~~~~l~~~~~~----~~~s~----~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~ 675 (930)
..++.+++|..+.++...+-. .|... +.+++..+.++.++++.+.++|-+.+.+.....
T Consensus 178 F~s~~~a~~~~~~~~T~~g~~~di~~p~~~~~~~~~~~f~~~~~i~~~~~lnl~~aii~~~f~~~~~ 244 (285)
T 3rvy_A 178 FGTLGESFYTLFQVMTLESWSMGIVRPLMEVYPYAWVFFIPFIFVVTFVMINLVVAICVDAMAILNQ 244 (285)
T ss_dssp HSSHHHHHHHHHHHHTTTTCCCCCHHHHHTTCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCChHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456889999999998876532 23322 346777777888899999999999998876543
No 416
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=26.51 E-value=4e+02 Score=26.26 Aligned_cols=85 Identities=13% Similarity=0.039 Sum_probs=56.8
Q ss_pred CcEEEEEEecCCcCcchHHHHHHHHHhcCcEEEEEE-ecCCCCCCChhHHHHHHHHHhcCCceEEEEEcch----hhHHH
Q 002371 159 WGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKS-ALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS----RTGLM 233 (930)
Q Consensus 159 w~~vaii~~d~~~g~~~~~~~~~~l~~~g~~i~~~~-~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~----~~~~~ 233 (930)
-.+|.+.....+.-.-+...+...|+..|.++.+-- ..|+. ..+..++..+||+|.+.+.. .....
T Consensus 123 ~~~vlla~~~gd~HdiG~~iva~~L~~~G~~Vi~LG~~vp~e---------~l~~~~~~~~~d~V~lS~l~~~~~~~~~~ 193 (258)
T 2i2x_B 123 KGTVVCHVAEGDVHDIGKNIVTALLRANGYNVVDLGRDVPAE---------EVLAAVQKEKPIMLTGTALMTTTMYAFKE 193 (258)
T ss_dssp SCEEEEEECTTCCCCHHHHHHHHHHHHTTCEEEEEEEECCSH---------HHHHHHHHHCCSEEEEECCCTTTTTHHHH
T ss_pred CCeEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHH---------HHHHHHHHcCCCEEEEEeeccCCHHHHHH
Confidence 346766666666556677888888999999986533 34332 34566666789999997632 46777
Q ss_pred HHHHHHHcCCCCCceEEEEeC
Q 002371 234 VFDVAQRLGMMDSGYVWIATT 254 (930)
Q Consensus 234 ~~~~a~~~g~~~~~~~~i~~~ 254 (930)
++++.++.|.. -.+++++.
T Consensus 194 ~i~~l~~~~~~--~~v~vGG~ 212 (258)
T 2i2x_B 194 VNDMLLENGIK--IPFACGGG 212 (258)
T ss_dssp HHHHHHTTTCC--CCEEEEST
T ss_pred HHHHHHhcCCC--CcEEEECc
Confidence 88888887754 23555543
No 417
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=26.23 E-value=2.3e+02 Score=28.57 Aligned_cols=114 Identities=12% Similarity=0.061 Sum_probs=65.7
Q ss_pred ceEEEeEEeecCCCcchHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccCChhh-
Q 002371 25 EVLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVM- 103 (930)
Q Consensus 25 ~~I~IG~~~~l~~~~G~~~~~a~~lAve~iN~~ggil~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~S~~- 103 (930)
+-=+||++..-+...+.....+++-|+++. |.++......+ .....+++.+|. .++.||+-+.....
T Consensus 139 g~~~I~~i~~~~~~~~~~r~~g~~~al~~~--------gi~~~~~~~~~---~~~~~~~~~~l~-~~~dai~~~~D~~a~ 206 (302)
T 2qh8_A 139 NVKSIGVVYNPGEANAVSLMELLKLSAAKH--------GIKLVEATALK---SADVQSATQAIA-EKSDVIYALIDNTVA 206 (302)
T ss_dssp TCCEEEEEECTTCHHHHHHHHHHHHHHHHT--------TCEEEEEECSS---GGGHHHHHHHHG-GGCSEEEECSCHHHH
T ss_pred CCcEEEEEecCCCcchHHHHHHHHHHHHHc--------CCEEEEEecCC---hHHHHHHHHHHh-ccCCEEEECCcHhHH
Confidence 344788887554333555667888777762 34444333322 233445566665 47888887655432
Q ss_pred --HHHHHHhhhcCCCcEEEeecCCCCCCCCCCCeEEEccCChHHHHHHHHHHHH
Q 002371 104 --AHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVS 155 (930)
Q Consensus 104 --~~av~~~~~~~~vp~is~~a~~~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~ 155 (930)
..++...+.+.++|++++.... +.. |-+.....+...+++..++++.
T Consensus 207 g~~~~l~~~~~~~~i~vig~d~~~--~~~---~~Lttv~~~~~~~G~~Aa~~l~ 255 (302)
T 2qh8_A 207 SAIEGMIVAANQAKTPVFGAATSY--VER---GAIASLGFDYYQIGVQTADYVA 255 (302)
T ss_dssp TTHHHHHHHHHHTTCCEEESSHHH--HHT---TCSEEEECCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEECCHHH--HhC---CcEEEEeCCHHHHHHHHHHHHH
Confidence 2234455556899999874321 111 3344555677777877777654
No 418
>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.23.6.1 d.230.4.1
Probab=26.18 E-value=3.3e+02 Score=27.11 Aligned_cols=99 Identities=14% Similarity=0.124 Sum_probs=58.3
Q ss_pred HHHHHHHHH-cCC-cEEEEEEecCCcCcchHHHHHHH--------HHhc-CcEEEEEEecCCCCCCChhHHHHHHHHHhc
Q 002371 148 SAIAEMVSY-FGW-GEVIAIFNDDDQGRNGVTALGDK--------LAEI-RCKISYKSALPPDQSVTETDVRNELVKVRM 216 (930)
Q Consensus 148 ~ai~~~l~~-~~w-~~vaii~~d~~~g~~~~~~~~~~--------l~~~-g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~ 216 (930)
+.+..+++. .+- .+|.+-....+.-.-+...+... |+.. |.++.+--. .......+..+++
T Consensus 107 ~~~~~~l~~~~~~~~~Vvlatv~gD~HdiG~~iv~~~k~~~~~~~L~~~~G~eVi~LG~--------~vp~e~iv~aa~e 178 (262)
T 1xrs_B 107 EETDEYIKENIGRKIVVVGASTGTDAHTVGIDAIMNMKGYAGHYGLERYEMIDAYNLGS--------QVANEDFIKKAVE 178 (262)
T ss_dssp HHHHHHHHHHTCSCEEEEEEEBTTCCCCHHHHHHHSTTCBTTBCCGGGCTTEEEEECCS--------SBCHHHHHHHHHH
T ss_pred HHHHHHHHhhcCCCCEEEEEeCCCCCchHHHHHHhhhhcccchHHHHhcCCcEEEECCC--------CCCHHHHHHHHHH
Confidence 334444443 332 34544444444444455566656 8888 999875221 1223456777777
Q ss_pred CCceEEEEEcch-------hhHHHHHHHHHHcCCCCCceEEEEeC
Q 002371 217 MEARVIVVHGYS-------RTGLMVFDVAQRLGMMDSGYVWIATT 254 (930)
Q Consensus 217 ~~~~viv~~~~~-------~~~~~~~~~a~~~g~~~~~~~~i~~~ 254 (930)
.+||+|.+.+.. .....+++++++.|+...-.+++++.
T Consensus 179 ~~~d~VglS~l~t~~~~~~~~~~~~i~~L~~~g~~~~i~vivGG~ 223 (262)
T 1xrs_B 179 LEADVLLVSQTVTQKNVHIQNMTHLIELLEAEGLRDRFVLLCGGP 223 (262)
T ss_dssp TTCSEEEEECCCCTTSHHHHHHHHHHHHHHHTTCGGGSEEEEECT
T ss_pred cCCCEEEEEeecCCccchHHHHHHHHHHHHhcCCCCCCEEEEECC
Confidence 899999997643 34566788888888753334555543
No 419
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=26.11 E-value=1.9e+02 Score=25.23 Aligned_cols=58 Identities=10% Similarity=0.119 Sum_probs=40.6
Q ss_pred chHHHHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCCceEEEEEcc--hhhHHHHHHHHHHcC
Q 002371 174 NGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY--SRTGLMVFDVAQRLG 242 (930)
Q Consensus 174 ~~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~--~~~~~~~~~~a~~~g 242 (930)
.....+...+++.|..+.. . .+....+..++...+|+|++... ..++..++++.++..
T Consensus 25 ~~~~~l~~~L~~~g~~v~~---~--------~~~~~a~~~l~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~ 84 (153)
T 3hv2_A 25 VILQRLQQLLSPLPYTLHF---A--------RDATQALQLLASREVDLVISAAHLPQMDGPTLLARIHQQY 84 (153)
T ss_dssp HHHHHHHHHHTTSSCEEEE---E--------SSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHHC
T ss_pred HHHHHHHHHhcccCcEEEE---E--------CCHHHHHHHHHcCCCCEEEEeCCCCcCcHHHHHHHHHhHC
Confidence 4677888889888876552 1 12334556666788999999643 456788888888754
No 420
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=26.09 E-value=2.5e+02 Score=23.94 Aligned_cols=58 Identities=7% Similarity=-0.079 Sum_probs=38.7
Q ss_pred chHHHHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCCceEEEEEcc--hhhHHHHHHHHHHcC
Q 002371 174 NGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY--SRTGLMVFDVAQRLG 242 (930)
Q Consensus 174 ~~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~--~~~~~~~~~~a~~~g 242 (930)
.....+...+++.|..+.. .. +....+..+....+|+|++... ..++..++++.++..
T Consensus 14 ~~~~~l~~~L~~~g~~v~~---~~--------~~~~al~~l~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~ 73 (138)
T 3c3m_A 14 MIVDVFVTMLERGGYRPIT---AF--------SGEECLEALNATPPDLVLLDIMMEPMDGWETLERIKTDP 73 (138)
T ss_dssp HHHHHHHHHHHHTTCEEEE---ES--------SHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHcCceEEE---eC--------CHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHcCc
Confidence 4567788888888877652 11 1233455566678999999654 346788888888753
No 421
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=25.72 E-value=25 Score=34.27 Aligned_cols=31 Identities=13% Similarity=0.168 Sum_probs=28.3
Q ss_pred CcEEEEccCChhhHHHHHHhhhcCCCcEEEe
Q 002371 91 DTLAIVGPQSAVMAHVLSHLANELQVPLLSF 121 (930)
Q Consensus 91 ~v~aiiGp~~S~~~~av~~~~~~~~vp~is~ 121 (930)
++..|+||..|+=.-....+++.+++|+||.
T Consensus 30 kiI~llGpPGsGKgTqa~~L~~~~g~~hIst 60 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQCEKLVQKFHFNHLSS 60 (217)
T ss_dssp EEEEEECCTTCCHHHHHHHHHHHHCCEEECH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHCCceEcH
Confidence 7889999999998888889999999999974
No 422
>4ecf_A ABC-type phosphate transport system, periplasmic; ABC transporter, phosphate transport receptor; HET: MSE; 1.55A {Lactobacillus brevis}
Probab=25.50 E-value=99 Score=30.89 Aligned_cols=70 Identities=7% Similarity=-0.041 Sum_probs=46.8
Q ss_pred eHHHHHHHHHHC-CCcccEEEEeCCCCCCCCCHHHHHHHHHcCcccEEEecEEEecC---ccceeeecccccccceEEEE
Q 002371 491 CIDVFLAAVRLL-PYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGDIAIVTN---RTKAVDFTQPYIESGLVVVA 566 (930)
Q Consensus 491 ~~dll~~l~~~l-n~~~~~~~~~~~~~~~n~~~~~l~~~l~~g~~D~~~~~~~~t~~---R~~~vdfs~p~~~~~~~~~v 566 (930)
..++++.+.++. +.+ +.+.. ++-...+.+|.+|++|+++....+..+ ....+ ...|+..+++++++
T Consensus 18 l~~~~~~f~~~~P~v~--i~v~~-------~~S~~~~~~l~~g~~Dig~~~~~~~~~e~~~~~~l-~~~~i~~d~lvvvv 87 (264)
T 4ecf_A 18 VEAAGEQYTGEHLGTF--INVQG-------GGTGTGLSQIQEGAVQIGNSDLFAGEQKGINARQL-VDHRVAVVGITPIV 87 (264)
T ss_dssp HHHHHHHHHHHSTTEE--EEEEE-------ECHHHHHHHHHHTSSSEEEESSCGGGSTTCCGGGE-ECCEEEEEEEEEEE
T ss_pred HHHHHHHHHHHCCCce--EEEEe-------CCCHHHHHHHHcCCCchhhccCCCChhHHhhccCC-EEEEEEEEEEEEEE
Confidence 356777777776 444 44333 446788999999999998865443321 01112 35788899999999
Q ss_pred eccC
Q 002371 567 PVRK 570 (930)
Q Consensus 567 ~~~~ 570 (930)
+...
T Consensus 88 ~~~~ 91 (264)
T 4ecf_A 88 NKKV 91 (264)
T ss_dssp CTTS
T ss_pred cCCC
Confidence 8765
No 423
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=25.39 E-value=2.3e+02 Score=23.81 Aligned_cols=69 Identities=10% Similarity=-0.041 Sum_probs=43.0
Q ss_pred chHHHHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCCceEEEEEc--chhhHHHHHHHHHHcCCCCCceEEE
Q 002371 174 NGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHG--YSRTGLMVFDVAQRLGMMDSGYVWI 251 (930)
Q Consensus 174 ~~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~--~~~~~~~~~~~a~~~g~~~~~~~~i 251 (930)
.....+...++ .|..+... .+....+..+++..+|+|++.. ...++..++++.++.+....-.+.+
T Consensus 15 ~~~~~l~~~l~-~~~~v~~~-----------~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~pii~ 82 (133)
T 3nhm_A 15 TMRETLRLLLS-GEFDCTTA-----------ADGASGLQQALAHPPDVLISDVNMDGMDGYALCGHFRSEPTLKHIPVIF 82 (133)
T ss_dssp HHHHHHHHHHT-TTSEEEEE-----------SSHHHHHHHHHHSCCSEEEECSSCSSSCHHHHHHHHHHSTTTTTCCEEE
T ss_pred HHHHHHHHHHh-CCcEEEEE-----------CCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhCCccCCCCEEE
Confidence 45667777777 67665421 1233456666778899999964 3457888999998864322223444
Q ss_pred EeC
Q 002371 252 ATT 254 (930)
Q Consensus 252 ~~~ 254 (930)
.++
T Consensus 83 ~s~ 85 (133)
T 3nhm_A 83 VSG 85 (133)
T ss_dssp EES
T ss_pred EeC
Confidence 444
No 424
>3k2g_A Resiniferatoxin-binding, phosphotriesterase- related protein; TIM barrel, binuclear zinc, protein structure initiative II (PSI II); 1.80A {Rhodobacter sphaeroides 2}
Probab=25.33 E-value=4.9e+02 Score=27.25 Aligned_cols=157 Identities=12% Similarity=-0.029 Sum_probs=81.7
Q ss_pred ChHHHHHHHHHHHhcCcEEEEccCCh---hhHHHHHHhhhcCCCcEEEeecCCCCCCCCCCCeEEEccCChHHHHHHHHH
Q 002371 76 NGFLSIMGALQFMETDTLAIVGPQSA---VMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAE 152 (930)
Q Consensus 76 ~~~~a~~~a~~li~~~v~aiiGp~~S---~~~~av~~~~~~~~vp~is~~a~~~~ls~~~~~~~fr~~p~~~~~~~ai~~ 152 (930)
+...++....++.+.||..||++... .....+..++++.++-++...+.- ...-+|.++.. .+ .+.+++
T Consensus 84 ~~~~~~~~l~~~~~aGv~tiV~~t~~g~gr~~~~l~~la~~~gv~i~~~tG~y---~~~~~P~~~~~-~~----~~~L~~ 155 (364)
T 3k2g_A 84 DLDLAIAEVKQFAAVGGRSIVDPTCRGIGRDPVKLRRISAETGVQVVMGAGYY---LASSMPETAAR-LS----ADDIAD 155 (364)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEECCCBTTTCCHHHHHHHHHHHCCEEEECCSBC---CGGGCCGGGGT-CC----HHHHHH
T ss_pred cHHHHHHHHHHHHhcCCCeEEEeCCCcccCCHHHHHHHHHHhCCcEEEEeCcc---CCCCCchhhcc-CC----HHHHHH
Confidence 67788888888888899999998743 456677788888887666433221 01111322221 11 244444
Q ss_pred HHHH--------cCCcE--EEEEEecCCcCcchHHHHHHHHH---hcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCCc
Q 002371 153 MVSY--------FGWGE--VIAIFNDDDQGRNGVTALGDKLA---EIRCKISYKSALPPDQSVTETDVRNELVKVRMMEA 219 (930)
Q Consensus 153 ~l~~--------~~w~~--vaii~~d~~~g~~~~~~~~~~l~---~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~ 219 (930)
++.+ -+.+- |+=+..|+..-..-.+.|+.+++ +.|..|.....- .+ ....+.-.+|.+-.....
T Consensus 156 ~~~~ei~~Gi~~~~vkag~IGEiGld~~~t~~q~~~f~aq~~~A~~~glPV~iH~~g-r~--~a~~e~l~iL~e~g~~~~ 232 (364)
T 3k2g_A 156 EIVAEALEGTDGTDARIGLIGEIGVSSDFTAEEEKSLRGAARAQVRTGLPLMVHLPG-WF--RLAHRVLDLVEEEGADLR 232 (364)
T ss_dssp HHHHHHHTCBTTBSCCCSSEEEEECCTTCCHHHHHHHHHHHHHHHHHCCCEEEECCT-TS--CCHHHHHHHHHHTTCCGG
T ss_pred HHHHHHHhccccCCcceeEEEEEEcCCCCCHHHHHHHHHHHHHHHHHCCeEEEecCC-CC--ccHHHHHHHHHHcCCCCC
Confidence 4322 23333 22344454333333344555444 447776654210 11 113444445544322223
Q ss_pred eEEEEEcchhh-HHHHHHHHHHcCC
Q 002371 220 RVIVVHGYSRT-GLMVFDVAQRLGM 243 (930)
Q Consensus 220 ~viv~~~~~~~-~~~~~~~a~~~g~ 243 (930)
++++.|++... -....+++.++|.
T Consensus 233 ~vvi~H~~~s~~~~e~a~~~l~~G~ 257 (364)
T 3k2g_A 233 HTVLCHMNPSHMDPVYQATLAQRGA 257 (364)
T ss_dssp GEEECCCGGGTTCHHHHHHHHHHTC
T ss_pred ceEEECCCCCCCCHHHHHHHHhCCc
Confidence 47777888432 3455666667774
No 425
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=25.28 E-value=5.5e+02 Score=26.07 Aligned_cols=98 Identities=13% Similarity=0.119 Sum_probs=61.0
Q ss_pred cEEEEccCChhhHHHHHHhhhcCCCcEEEeecCCCCCCCCCCCeEEEccC-------ChHHHHHHHHHHHHHcC------
Q 002371 92 TLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAP-------NDLYLMSAIAEMVSYFG------ 158 (930)
Q Consensus 92 v~aiiGp~~S~~~~av~~~~~~~~vp~is~~a~~~~ls~~~~~~~fr~~p-------~~~~~~~ai~~~l~~~~------ 158 (930)
+.-++||-..+...+++.+..+.++=++..+.+.... .--||.|+.- +....-+++..+.+.++
T Consensus 24 iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~~d~~---~g~FfMr~~~~~~~~~~~~~~L~~~l~~la~~l~m~~~l~ 100 (302)
T 3o1l_A 24 RLVIACPDRVGIVAKVSNFLASHNGWITEASHHSDNL---SGWFFMRHEIRADTLPFDLDGFREAFTPIAEEFSMDWRIT 100 (302)
T ss_dssp EEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEEEETT---TTEEEEEEEEEGGGSSSCHHHHHHHHHHHHHHHTCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEEecCC---CCeEEEEEEEecCCCCCCHHHHHHHHHHHHHHhCCeeeec
Confidence 6778899999999999999999998888755442211 1235666632 12333445555555543
Q ss_pred ----CcEEEEEEecCCcCcchHHHHHHHHHhc--CcEEEEEEe
Q 002371 159 ----WGEVIAIFNDDDQGRNGVTALGDKLAEI--RCKISYKSA 195 (930)
Q Consensus 159 ----w~~vaii~~d~~~g~~~~~~~~~~l~~~--g~~i~~~~~ 195 (930)
-++++++.+.. |. ..+++.++.+.. +.+|+....
T Consensus 101 ~~~~~~ri~vl~Sg~--g~-nl~~ll~~~~~g~l~~~I~~Vis 140 (302)
T 3o1l_A 101 DSAQKKRVVLMASRE--SH-CLADLLHRWHSDELDCDIACVIS 140 (302)
T ss_dssp ETTSCCEEEEEECSC--CH-HHHHHHHHHHTTCSCSEEEEEEE
T ss_pred ccCCCcEEEEEEeCC--ch-hHHHHHHHHHCCCCCcEEEEEEE
Confidence 34889888655 33 455555555443 456766544
No 426
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=25.19 E-value=3.2e+02 Score=23.35 Aligned_cols=56 Identities=11% Similarity=0.131 Sum_probs=37.0
Q ss_pred chHHHHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCCceEEEEEcc--hhhHHHHHHHHHH
Q 002371 174 NGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY--SRTGLMVFDVAQR 240 (930)
Q Consensus 174 ~~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~--~~~~~~~~~~a~~ 240 (930)
.....+...+++.|..+.. .. +....+..++...+|+|++... ..++..++++.++
T Consensus 19 ~~~~~l~~~L~~~g~~v~~---~~--------~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~ 76 (147)
T 2zay_A 19 PALAASISALSQEGFDIIQ---CG--------NAIEAVPVAVKTHPHLIITEANMPKISGMDLFNSLKK 76 (147)
T ss_dssp GGGHHHHHHHHHHTEEEEE---ES--------SHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCeEEE---eC--------CHHHHHHHHHcCCCCEEEEcCCCCCCCHHHHHHHHHc
Confidence 4567777778877876652 11 2233455555567999999753 4567888888887
No 427
>3kn3_A Putative periplasmic protein; alpha-beta structure, periplasmic binding protein fold, STRU genomics, PSI-2, protein structure initiative; HET: GSH CIT; 2.41A {Wolinella succinogenes}
Probab=25.08 E-value=35 Score=33.84 Aligned_cols=74 Identities=8% Similarity=-0.113 Sum_probs=50.3
Q ss_pred EEEeHHHHHHHHHHCCCcccEEEEeCCCCCCCCCHHHHHHHHHcCcccEEEecEEEecCcc---ceeeecccccccceEE
Q 002371 488 HGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGDIAIVTNRT---KAVDFTQPYIESGLVV 564 (930)
Q Consensus 488 ~G~~~dll~~l~~~ln~~~~~~~~~~~~~~~n~~~~~l~~~l~~g~~D~~~~~~~~t~~R~---~~vdfs~p~~~~~~~~ 564 (930)
.|+.-+|...+.++.|.++.+.+ +.-..++.++.+|.+|+.+..-....+.. ....--.+|....+++
T Consensus 18 s~ll~eL~~~Fek~~gv~V~~~~---------~gSg~ll~qi~~G~aDVfisa~~~~~~~l~~~G~~~~~~~~a~N~LVL 88 (242)
T 3kn3_A 18 TGLLDVLAPAYKKDTGVDLKWVA---------VGTGNALKLGENCDVDVVFVHAPKVELEYVEKGFGIDRTPVMYNDFVI 88 (242)
T ss_dssp HTHHHHHHHHHHHHHSCEEEEEE---------ECHHHHHHHHHTTCCSEEEECCHHHHHHHHHHTSEEEEEEEECSCEEE
T ss_pred chHHHHHHHHHHHHhCCeEEEEE---------cCcHHHHHHHhcCCCCEEEecChHhHHHHHhcCCCccceEEEcceEEE
Confidence 35567788888888887766655 34668899999999999876332222111 0111246788899999
Q ss_pred EEeccC
Q 002371 565 VAPVRK 570 (930)
Q Consensus 565 ~v~~~~ 570 (930)
++|+..
T Consensus 89 V~P~~~ 94 (242)
T 3kn3_A 89 IGNPSF 94 (242)
T ss_dssp EECTHH
T ss_pred EEeCCC
Confidence 999865
No 428
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=24.84 E-value=34 Score=32.98 Aligned_cols=30 Identities=27% Similarity=0.263 Sum_probs=26.7
Q ss_pred cEEEEccCChhhHHHHHHhhhcCCCcEEEe
Q 002371 92 TLAIVGPQSAVMAHVLSHLANELQVPLLSF 121 (930)
Q Consensus 92 v~aiiGp~~S~~~~av~~~~~~~~vp~is~ 121 (930)
+.+++||..|+=.-....+++++++|+||.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~ist 31 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVHIST 31 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeEEcH
Confidence 467889999998888899999999999985
No 429
>3qbe_A 3-dehydroquinate synthase; shikimate pathway, mycobacte tuberculosis, nicotinamide adenine dinucleotide (NAD)-depen enzyme; 2.07A {Mycobacterium tuberculosis} PDB: 3qbd_A
Probab=24.81 E-value=2.2e+02 Score=30.04 Aligned_cols=110 Identities=13% Similarity=0.079 Sum_probs=66.1
Q ss_pred CeEEEccCChHHHHHHHHHHHHHcCCcEEEEEEecCCcCcchHHHHHHHHHhcCcEEEEEEecCCCC-CCChhHHHHHHH
Q 002371 134 PFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQ-SVTETDVRNELV 212 (930)
Q Consensus 134 ~~~fr~~p~~~~~~~ai~~~l~~~~w~~vaii~~d~~~g~~~~~~~~~~l~~~g~~i~~~~~~~~~~-~~~~~d~~~~l~ 212 (930)
||-+...+... ..+.++++.. +++.+|+....+. ..+.+.+.|++.|+++... .++.+. ..+.+.+...++
T Consensus 23 ~~~I~~G~g~l---~~l~~~l~~~--~rvlIVtd~~v~~--~~~~v~~~L~~~g~~~~~~-~~~~gE~~kt~~~v~~~~~ 94 (368)
T 3qbe_A 23 PYPVVIGTGLL---DELEDLLADR--HKVAVVHQPGLAE--TAEEIRKRLAGKGVDAHRI-EIPDAEAGKDLPVVGFIWE 94 (368)
T ss_dssp CEEEEEESCCH---HHHHHHHTTC--SEEEEEECGGGHH--HHHHHHHHHHHTTCEEEEE-ECCSGGGGGBHHHHHHHHH
T ss_pred CceEEEcCCHH---HHHHHHHHcC--CEEEEEECccHHH--HHHHHHHHHHhcCCcceEE-EeCCCCCCCCHHHHHHHHH
Confidence 44444444433 2344555543 8999998665443 3688899999999886532 344320 123456666667
Q ss_pred HHhcC---CceEEEEEcch--hhHHHHHHHHHHcCCCCCceEEEEeC
Q 002371 213 KVRMM---EARVIVVHGYS--RTGLMVFDVAQRLGMMDSGYVWIATT 254 (930)
Q Consensus 213 ~l~~~---~~~viv~~~~~--~~~~~~~~~a~~~g~~~~~~~~i~~~ 254 (930)
.+++. +.|+||..+.+ -|...++......|+ .++-|-|.
T Consensus 95 ~l~~~~~~r~d~IIavGGGsv~D~ak~~Aa~~~rgi---p~i~IPTT 138 (368)
T 3qbe_A 95 VLGRIGIGRKDALVSLGGGAATDVAGFAAATWLRGV---SIVHLPTT 138 (368)
T ss_dssp HHHHHTCCTTCEEEEEESHHHHHHHHHHHHHGGGCC---EEEEEECS
T ss_pred HHHHcCCCCCcEEEEECChHHHHHHHHHHHHhccCC---cEEEECCC
Confidence 76654 46888887655 566777665554453 45566655
No 430
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=24.80 E-value=1.4e+02 Score=29.89 Aligned_cols=121 Identities=12% Similarity=0.033 Sum_probs=67.2
Q ss_pred EEeEEeecC-CCcchHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhc--CcEEEEccCChhhH
Q 002371 28 NVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMET--DTLAIVGPQSAVMA 104 (930)
Q Consensus 28 ~IG~~~~l~-~~~G~~~~~a~~lAve~iN~~ggil~g~~l~l~~~D~~~~~~~a~~~a~~li~~--~v~aiiGp~~S~~~ 104 (930)
+||++.+-. ......-..|++-|+++.+ + + ..... +.....+...+.+.+.+++.. ++.||+.. +...+
T Consensus 129 ~i~~i~~~~~~~~~~~R~~gf~~~l~~~~----~-~-~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~-~d~~a 200 (289)
T 3g85_A 129 SAAAILTESLNDAMDNRNKGFIETCHKNG----I-K-ISENH-IIAAENSIHGGVDAAKKLMKLKNTPKALFCN-SDSIA 200 (289)
T ss_dssp BCEEEECCCSSHHHHHHHHHHHHHHHHTT----C-B-CCGGG-EEECCSSHHHHHHHHHHHTTSSSCCSEEEES-SHHHH
T ss_pred EEEEEeCCcccccHHHHHHHHHHHHHHcC----C-C-CChhh-eeccCCCHHHHHHHHHHHHcCCCCCcEEEEc-CCHHH
Confidence 466665432 2223344567766666632 1 0 11111 123445777888888888876 68999974 44455
Q ss_pred HHHHHhhhcCC--Cc----EEEeecCCCCCCCCCCCeEEEccCChHHHHHHHHHHHHH
Q 002371 105 HVLSHLANELQ--VP----LLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSY 156 (930)
Q Consensus 105 ~av~~~~~~~~--vp----~is~~a~~~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~ 156 (930)
..+...+.+.+ || ++++...+..+.....|-+-....+...++...++++..
T Consensus 201 ~g~~~al~~~g~~vP~di~vig~d~~~~~~~~~~~p~lttv~~~~~~~g~~a~~~l~~ 258 (289)
T 3g85_A 201 LGVISVLNKRQISIPDDIEIVAIGMNDREYTEFSTPPVTIVDIPIEEMAGTCISLVEK 258 (289)
T ss_dssp HHHHHHHHHTTCCTTTTCEEEEEECSCHHHHHSSSSCCEEEECCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCceEEEEeCCCCcchhhccCCCCeEEcCCHHHHHHHHHHHHHH
Confidence 55666666554 34 787762222222222344445566667777777777543
No 431
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=24.71 E-value=3.2e+02 Score=23.15 Aligned_cols=57 Identities=9% Similarity=-0.049 Sum_probs=40.2
Q ss_pred chHHHHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCCceEEEEEcc--hhhHHHHHHHHHHc
Q 002371 174 NGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY--SRTGLMVFDVAQRL 241 (930)
Q Consensus 174 ~~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~--~~~~~~~~~~a~~~ 241 (930)
...+.+...+++.|.++.. . .+....+..++...+|+|++... ..++..++++.++.
T Consensus 18 ~~~~~l~~~L~~~g~~v~~---~--------~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~ 76 (142)
T 3cg4_A 18 HVRIAVKTILSDAGFHIIS---A--------DSGGQCIDLLKKGFSGVVLLDIMMPGMDGWDTIRAILDN 76 (142)
T ss_dssp HHHHHHHHHHHHTTCEEEE---E--------SSHHHHHHHHHTCCCEEEEEESCCSSSCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCeEEEE---e--------CCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhh
Confidence 4677888888888876542 1 12345566777788999999754 34678888888873
No 432
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=24.58 E-value=1.7e+02 Score=25.87 Aligned_cols=59 Identities=10% Similarity=0.087 Sum_probs=39.2
Q ss_pred chHHHHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcC--CceEEEEEc--chhhHHHHHHHHHHcC
Q 002371 174 NGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHG--YSRTGLMVFDVAQRLG 242 (930)
Q Consensus 174 ~~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~--~~~viv~~~--~~~~~~~~~~~a~~~g 242 (930)
...+.+...+++.|..+... .. +....+..+++. .+|+|++.. ...++..++++.++..
T Consensus 47 ~~~~~l~~~L~~~g~~v~~~--~~--------~~~~al~~l~~~~~~~dliilD~~l~~~~g~~~~~~lr~~~ 109 (157)
T 3hzh_A 47 FTVKQLTQIFTSEGFNIIDT--AA--------DGEEAVIKYKNHYPNIDIVTLXITMPKMDGITCLSNIMEFD 109 (157)
T ss_dssp HHHHHHHHHHHHTTCEEEEE--ES--------SHHHHHHHHHHHGGGCCEEEECSSCSSSCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCCCeEEEE--EC--------CHHHHHHHHHhcCCCCCEEEEeccCCCccHHHHHHHHHhhC
Confidence 46778888888888877522 11 223345555555 689999864 3457788888888765
No 433
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=24.38 E-value=2.1e+02 Score=23.15 Aligned_cols=58 Identities=14% Similarity=0.225 Sum_probs=38.5
Q ss_pred chHHHHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCCceEEEEEcc--hhhHHHHHHHHHHcC
Q 002371 174 NGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY--SRTGLMVFDVAQRLG 242 (930)
Q Consensus 174 ~~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~--~~~~~~~~~~a~~~g 242 (930)
...+.+...+++.|.++... . . .. ..+..++...+|++++... ..++..++++.++..
T Consensus 12 ~~~~~l~~~l~~~g~~v~~~---~-~----~~---~~~~~l~~~~~dlii~d~~~~~~~~~~~~~~l~~~~ 71 (119)
T 2j48_A 12 EAATVVCEMLTAAGFKVIWL---V-D----GS---TALDQLDLLQPIVILMAWPPPDQSCLLLLQHLREHQ 71 (119)
T ss_dssp HHHHHHHHHHHHTTCEEEEE---S-C----HH---HHHHHHHHHCCSEEEEECSTTCCTHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhCCcEEEEe---c-C----HH---HHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHhcc
Confidence 45677888888888876531 1 1 23 3444555567999998754 346778888888754
No 434
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=24.25 E-value=1.7e+02 Score=24.97 Aligned_cols=58 Identities=12% Similarity=0.194 Sum_probs=41.8
Q ss_pred chHHHHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCCceEEEEEcc--h--hhHHHHHHHHHHcC
Q 002371 174 NGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY--S--RTGLMVFDVAQRLG 242 (930)
Q Consensus 174 ~~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~--~--~~~~~~~~~a~~~g 242 (930)
.....+.+.+++.|.++... .+....+..++...+|+|++... . .++..++++.++.+
T Consensus 17 ~~~~~l~~~L~~~g~~v~~~-----------~~~~~a~~~l~~~~~dlvi~D~~l~~~~~~g~~~~~~l~~~~ 78 (136)
T 3kto_A 17 DARAALSKLLSPLDVTIQCF-----------ASAESFMRQQISDDAIGMIIEAHLEDKKDSGIELLETLVKRG 78 (136)
T ss_dssp HHHHHHHHHHTTSSSEEEEE-----------SSHHHHTTSCCCTTEEEEEEETTGGGBTTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCcEEEEe-----------CCHHHHHHHHhccCCCEEEEeCcCCCCCccHHHHHHHHHhCC
Confidence 46778888898888876521 13344566677788999999754 3 46788899998865
No 435
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*
Probab=24.12 E-value=2e+02 Score=28.85 Aligned_cols=87 Identities=14% Similarity=0.128 Sum_probs=59.2
Q ss_pred HHHHHHHHHcCCcEEEEEEecCCcCcchHHHHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCCceEEEEEc-
Q 002371 148 SAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHG- 226 (930)
Q Consensus 148 ~ai~~~l~~~~w~~vaii~~d~~~g~~~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~- 226 (930)
..+++....-|...+.++. |..|..+..+.+...-+..++.|.... +-. +++ ++...+..++|.|++..
T Consensus 75 ~~~A~~y~~~GA~~isvlt-d~~~f~Gs~~~l~~ir~~v~lPvl~kd-fii------d~~--qv~~A~~~GAD~VlLi~a 144 (272)
T 3qja_A 75 AKLAQAYQDGGARIVSVVT-EQRRFQGSLDDLDAVRASVSIPVLRKD-FVV------QPY--QIHEARAHGADMLLLIVA 144 (272)
T ss_dssp HHHHHHHHHTTCSEEEEEC-CGGGHHHHHHHHHHHHHHCSSCEEEES-CCC------SHH--HHHHHHHTTCSEEEEEGG
T ss_pred HHHHHHHHHcCCCEEEEec-ChhhcCCCHHHHHHHHHhCCCCEEECc-ccc------CHH--HHHHHHHcCCCEEEEecc
Confidence 4566667778989988886 445555556666666555677776443 211 222 36777789999999853
Q ss_pred --chhhHHHHHHHHHHcCCC
Q 002371 227 --YSRTGLMVFDVAQRLGMM 244 (930)
Q Consensus 227 --~~~~~~~~~~~a~~~g~~ 244 (930)
...+...++..+++.||.
T Consensus 145 ~l~~~~l~~l~~~a~~lGl~ 164 (272)
T 3qja_A 145 ALEQSVLVSMLDRTESLGMT 164 (272)
T ss_dssp GSCHHHHHHHHHHHHHTTCE
T ss_pred cCCHHHHHHHHHHHHHCCCc
Confidence 456778889999999874
No 436
>3iv7_A Alcohol dehydrogenase IV; NP_602249.1, iron-containing alcohol dehydrogenase, structur genomics, joint center for structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}
Probab=24.06 E-value=49 Score=35.13 Aligned_cols=95 Identities=14% Similarity=0.062 Sum_probs=58.4
Q ss_pred HHHHHHHHHcCCcEEEEEEecCCcCcchHHHHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCCceEEEEEcc
Q 002371 148 SAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY 227 (930)
Q Consensus 148 ~ai~~~l~~~~w~~vaii~~d~~~g~~~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~ 227 (930)
+.+.++++.+|.+++.+|+....+| ..+.+.+.|+ ..+++. .+.++ .+.+.....++.+++.++|+||-.+.
T Consensus 26 ~~l~~~l~~~g~~rvliVtd~~~~~--~~~~v~~~L~---~~~~f~-~v~~~--p~~~~v~~~~~~~~~~~~D~IIavGG 97 (364)
T 3iv7_A 26 AFLKQEVERRGSAKVMVIAGEREMS--IAHKVASEIE---VAIWHD-EVVMH--VPIEVAERARAVATDNEIDLLVCVGG 97 (364)
T ss_dssp HHHHHHHHHHTCSSEEEECCGGGHH--HHHHHTTTSC---CSEEEC-CCCTT--CBHHHHHHHHHHHHHTTCCEEEEEES
T ss_pred HHHHHHHHHcCCCEEEEEECCCHHH--HHHHHHHHcC---CCEEEc-ceecC--CCHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 4467788889999999988654322 2344444443 122332 22333 44778888888999999999988765
Q ss_pred h--hhHHHHHHHHHHcCCCCCceEEEEeCc
Q 002371 228 S--RTGLMVFDVAQRLGMMDSGYVWIATTW 255 (930)
Q Consensus 228 ~--~~~~~~~~~a~~~g~~~~~~~~i~~~~ 255 (930)
+ -|..+++... .+ ..++-|-|..
T Consensus 98 Gs~iD~aK~iA~~--~~---~P~i~IPTTa 122 (364)
T 3iv7_A 98 GSTIGLAKAIAMT--TA---LPIVAIPTTY 122 (364)
T ss_dssp HHHHHHHHHHHHH--HC---CCEEEEECSS
T ss_pred cHHHHHHHHHHhc--cC---CCEEEEcCCc
Confidence 5 4555555442 23 3456666654
No 437
>3szu_A ISPH, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; 3Fe-4S iron-sulfur cluster, conserved cysteine, IPP and DMAP production final STEP; HET: H6P; 1.40A {Escherichia coli} PDB: 3szl_A* 3f7t_A* 3szo_A* 3t0f_A* 3t0g_A* 3urk_A* 3utc_A* 3utd_A* 3uv3_A* 3uv6_A* 3uv7_A* 3uwm_A* 3ke8_A* 3ke9_A* 3kef_A* 3kel_A 3kem_A*
Probab=23.88 E-value=75 Score=32.81 Aligned_cols=49 Identities=16% Similarity=0.179 Sum_probs=40.2
Q ss_pred EecCCCChHHHHHHH-HHHHhc-CcEEEEccCChhhHHHHHHhhhcCCCcE
Q 002371 70 MHDAKFNGFLSIMGA-LQFMET-DTLAIVGPQSAVMAHVLSHLANELQVPL 118 (930)
Q Consensus 70 ~~D~~~~~~~a~~~a-~~li~~-~v~aiiGp~~S~~~~av~~~~~~~~vp~ 118 (930)
..||=|++..-.+.+ .+|..+ .+..|||+..|+.+.-+.+++.+.+.|-
T Consensus 204 ~~ntIC~AT~~RQ~av~~lA~~vD~miVVGg~nSSNT~rL~eia~~~g~~t 254 (328)
T 3szu_A 204 RKDDICYATTNRQEAVRALAEQAEVVLVVGSKNSSNSNRLAELAQRMGKRA 254 (328)
T ss_dssp SSCSCCHHHHHHHHHHHHHHHHCSEEEEECCTTCHHHHHHHHHHHHTTCEE
T ss_pred CCCCcCHHHHHHHHHHHHHHHhCCEEEEeCCCCCchHHHHHHHHHHhCCCE
Confidence 478889887766655 455555 8999999999999999999999999874
No 438
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=23.85 E-value=1.4e+02 Score=27.18 Aligned_cols=86 Identities=14% Similarity=0.047 Sum_probs=47.2
Q ss_pred EEEEEEecCCcCc--chHHHHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCCceEEEEEcc--hhhH--HHH
Q 002371 161 EVIAIFNDDDQGR--NGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY--SRTG--LMV 234 (930)
Q Consensus 161 ~vaii~~d~~~g~--~~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~--~~~~--~~~ 234 (930)
++.|+|. +.+|. ..++.+.+.+++.|+++... +.. ..+....+.++.+ .|.|++.+. .... ..+
T Consensus 2 kv~IvY~-S~tGnT~~~A~~ia~~l~~~g~~v~~~---~~~----~~~~~~~~~~~~~--~d~ii~Gspty~g~~p~~~f 71 (161)
T 3hly_A 2 SVLIGYL-SDYGYSDRLSQAIGRGLVKTGVAVEMV---DLR----AVDPQELIEAVSS--ARGIVLGTPPSQPSEAVATA 71 (161)
T ss_dssp CEEEEEC-TTSTTHHHHHHHHHHHHHHTTCCEEEE---ETT----TCCHHHHHHHHHH--CSEEEEECCBSSCCHHHHHH
T ss_pred EEEEEEE-CCChHHHHHHHHHHHHHHhCCCeEEEE---ECC----CCCHHHHHHHHHh--CCEEEEEcCCcCCchhHHHH
Confidence 4677774 34554 45788888888888875432 222 2234444555543 466666432 2222 467
Q ss_pred HHHHHHcCCCCCceEEEEeCcc
Q 002371 235 FDVAQRLGMMDSGYVWIATTWL 256 (930)
Q Consensus 235 ~~~a~~~g~~~~~~~~i~~~~~ 256 (930)
+.......+.+.....+++.++
T Consensus 72 l~~l~~~~l~gk~v~~fgs~g~ 93 (161)
T 3hly_A 72 LSTIFAAAHNKQAIGLFDSYGG 93 (161)
T ss_dssp HHHHHHHCCTTSEEEEECCCCS
T ss_pred HHHHHhhhhCCCEEEEEEcCCC
Confidence 7776665555544444444443
No 439
>1xah_A Sadhqs, 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid biosynthesis, open form, form B, domain movement, cyclase; HET: NAD; 2.20A {Staphylococcus aureus} PDB: 1xag_A* 1xai_A* 1xaj_A* 1xal_A*
Probab=23.50 E-value=1e+02 Score=32.46 Aligned_cols=97 Identities=12% Similarity=0.128 Sum_probs=54.9
Q ss_pred HHHHHHHcCCcEEEEEEecCCcCcchHHHHHHHHHhcCcEEEEEEecCCC-CCCChhHHHHHHHHHhcCCc---eEEEEE
Q 002371 150 IAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPD-QSVTETDVRNELVKVRMMEA---RVIVVH 225 (930)
Q Consensus 150 i~~~l~~~~w~~vaii~~d~~~g~~~~~~~~~~l~~~g~~i~~~~~~~~~-~~~~~~d~~~~l~~l~~~~~---~viv~~ 225 (930)
+.++++.+ +++.+|++...+.. ..+.+.+.| +.| ++.. ..++.+ ...+.+.....++.+++.++ |+||..
T Consensus 24 l~~~l~~~--~~~liVtd~~~~~~-~~~~v~~~L-~~g-~~~~-~~~~~~e~~p~~~~v~~~~~~~~~~~~~r~d~iIav 97 (354)
T 1xah_A 24 IGTYLNQF--DQSFLLIDEYVNQY-FANKFDDIL-SYE-NVHK-VIIPAGEKTKTFEQYQETLEYILSHHVTRNTAIIAV 97 (354)
T ss_dssp HHHHHTTC--SCEEEEEEHHHHHH-HHHHHC--------CEEE-EEECSGGGGCSHHHHHHHHHHHHTTCCCTTCEEEEE
T ss_pred HHHHHHhc--CeEEEEECCcHHHH-HHHHHHHHH-hcC-CeEE-EEECCCCCCCCHHHHHHHHHHHHHcCCCCCceEEEE
Confidence 34455555 88998886543322 566777777 667 3332 123322 11346778888899998888 888876
Q ss_pred cch--hhHHHHHHHHHHcCCCCCceEEEEeCc
Q 002371 226 GYS--RTGLMVFDVAQRLGMMDSGYVWIATTW 255 (930)
Q Consensus 226 ~~~--~~~~~~~~~a~~~g~~~~~~~~i~~~~ 255 (930)
+.+ -|...++......| ..++-|-|..
T Consensus 98 GGGsv~D~ak~vA~~~~rg---ip~i~IPTT~ 126 (354)
T 1xah_A 98 GGGATGDFAGFVAATLLRG---VHFIQVPTTI 126 (354)
T ss_dssp ESHHHHHHHHHHHHHBTTC---CEEEEEECST
T ss_pred CChHHHHHHHHHHHHhccC---CCEEEECCcc
Confidence 544 56777766554434 3566666654
No 440
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=23.48 E-value=1.7e+02 Score=25.34 Aligned_cols=82 Identities=1% Similarity=0.007 Sum_probs=0.0
Q ss_pred EEEEE-ecCCcCcchHHHHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCCceEEEEEcc-------hh-hHH
Q 002371 162 VIAIF-NDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY-------SR-TGL 232 (930)
Q Consensus 162 vaii~-~d~~~g~~~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~-------~~-~~~ 232 (930)
|.|+| +.+...+..++.+.+.+++.|.++.....-... ..++ .+.|.|++.+. ++ ...
T Consensus 1 i~I~Y~S~tGnT~~iA~~ia~~l~~~g~~v~~~~~~~~~----~~~l---------~~~d~iiig~pty~~g~~p~~~~~ 67 (138)
T 5nul_A 1 MKIVYWSGTGNTEKMAELIAKGIIESGKDVNTINVSDVN----IDEL---------LNEDILILGCSAMTDEVLEESEFE 67 (138)
T ss_dssp CEEEEECSSSHHHHHHHHHHHHHHHTTCCCEEEEGGGCC----HHHH---------TTCSEEEEEECCBTTTBCCTTTHH
T ss_pred CEEEEECCCchHHHHHHHHHHHHHHCCCeEEEEEhhhCC----HHHH---------hhCCEEEEEcCccCCCCCChHHHH
Q ss_pred HHHHHHHHcCCCCCceEEEEeCccc
Q 002371 233 MVFDVAQRLGMMDSGYVWIATTWLS 257 (930)
Q Consensus 233 ~~~~~a~~~g~~~~~~~~i~~~~~~ 257 (930)
.|+...... +.+..+..+++.++.
T Consensus 68 ~fl~~l~~~-l~~k~~~~f~t~g~~ 91 (138)
T 5nul_A 68 PFIEEISTK-ISGKKVALFGSYGWG 91 (138)
T ss_dssp HHHHHHGGG-CTTCEEEEEEEESSS
T ss_pred HHHHHHHhh-cCCCEEEEEEecCCC
No 441
>1pii_A N-(5'phosphoribosyl)anthranilate isomerase; bifunctional(isomerase and synthase); 2.00A {Escherichia coli} SCOP: c.1.2.4 c.1.2.4 PDB: 1jcm_P* 2kzh_A
Probab=23.35 E-value=1.4e+02 Score=32.57 Aligned_cols=86 Identities=14% Similarity=0.026 Sum_probs=58.8
Q ss_pred HHHHHHHHHcCCcEEEEEEecCCcCcchHHHHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCCceEEEEEcc
Q 002371 148 SAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY 227 (930)
Q Consensus 148 ~ai~~~l~~~~w~~vaii~~d~~~g~~~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~ 227 (930)
..+|+..+.. ..-+.++. |..|..+..+.+...-+..++.|..+..+ .+.+ ++.+.+..++|+|.+...
T Consensus 71 ~~iA~~y~~~-A~~IsvLT-d~~~F~gs~~dL~~vr~~v~lPvLrKDFI-------~d~~--Qi~ea~~~GAD~ILLi~a 139 (452)
T 1pii_A 71 ARIAAIYKHY-ASAISVLT-DEKYFQGSFNFLPIVSQIAPQPILCKDFI-------IDPY--QIYLARYYQADACLLMLS 139 (452)
T ss_dssp HHHHHHHTTT-CSEEEEEC-CSTTTCCCTTHHHHHHHHCCSCEEEESCC-------CSHH--HHHHHHHTTCSEEEEETT
T ss_pred HHHHHHHHhh-CcEEEEEe-cccccCCCHHHHHHHHHhcCCCeEEEecc-------CCHH--HHHHHHHcCCCEEEEEcc
Confidence 4444444443 55666665 66676777777777766667877654433 2233 467789999999999765
Q ss_pred h---hhHHHHHHHHHHcCCC
Q 002371 228 S---RTGLMVFDVAQRLGMM 244 (930)
Q Consensus 228 ~---~~~~~~~~~a~~~g~~ 244 (930)
. .+...++..++++||.
T Consensus 140 ~l~~~~l~~l~~~a~~lgm~ 159 (452)
T 1pii_A 140 VLDDDQYRQLAAVAHSLEMG 159 (452)
T ss_dssp TCCHHHHHHHHHHHHHTTCE
T ss_pred cCCHHHHHHHHHHHHHcCCe
Confidence 4 5788899999999984
No 442
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=23.26 E-value=97 Score=31.34 Aligned_cols=65 Identities=9% Similarity=-0.014 Sum_probs=46.3
Q ss_pred cEEEEEE-ecCCcCcchHHHHHHHHHhcCc---EEEEEEecCCCCCCChhHHHHHHHHHhcCCceEEEEEcc
Q 002371 160 GEVIAIF-NDDDQGRNGVTALGDKLAEIRC---KISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY 227 (930)
Q Consensus 160 ~~vaii~-~d~~~g~~~~~~~~~~l~~~g~---~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~ 227 (930)
++|+++- .+++|-....+.+.+.+++.|. .+..... ... .+.+.....++++.+.++|.||+.+.
T Consensus 3 ~~Igvi~~~~~p~~~~i~~gi~~~l~~~gy~g~~v~l~~~-~~~--~~~~~~~~~~~~l~~~~vDgII~~~~ 71 (295)
T 3lft_A 3 AKIGVLQFVSHPSLDLIYKGIQDGLAEEGYKDDQVKIDFM-NSE--GDQSKVATMSKQLVANGNDLVVGIAT 71 (295)
T ss_dssp EEEEEEECSCCHHHHHHHHHHHHHHHHTTCCGGGEEEEEE-ECT--TCHHHHHHHHHHHTTSSCSEEEEESH
T ss_pred eEEEEEEccCChhHHHHHHHHHHHHHHcCCCCCceEEEEe-cCC--CCHHHHHHHHHHHHhcCCCEEEECCc
Confidence 5788872 2466777888999999999998 6543221 212 23556677889999999999998764
No 443
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=23.24 E-value=4.2e+02 Score=25.87 Aligned_cols=116 Identities=12% Similarity=0.078 Sum_probs=64.8
Q ss_pred EEEeEEeecC-CCcchHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhc---CcEEEEccCChh
Q 002371 27 LNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMET---DTLAIVGPQSAV 102 (930)
Q Consensus 27 I~IG~~~~l~-~~~G~~~~~a~~lAve~iN~~ggil~g~~l~l~~~D~~~~~~~a~~~a~~li~~---~v~aiiGp~~S~ 102 (930)
=+||++.... ......-..|++-|+++. |.++. +.....+...+...+.++++. ++.||+.. +..
T Consensus 119 ~~i~~i~~~~~~~~~~~R~~gf~~~l~~~--------g~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~ai~~~-~d~ 187 (277)
T 3cs3_A 119 KKVLLLSGPEKGYDSQERLAVSTRELTRF--------GIPYE--IIQGDFTEPSGYAAAKKILSQPQTEPVDVFAF-NDE 187 (277)
T ss_dssp SCEEEEECCTTSHHHHHHHHHHHHHHHHT--------TCCEE--EEECCSSHHHHHHHHHHHTTSCCCSSEEEEES-SHH
T ss_pred ceEEEEeCCccCccHHHHHHHHHHHHHHc--------CCCee--EEeCCCChhHHHHHHHHHHhcCCCCCcEEEEc-ChH
Confidence 3577776443 223345567777777763 22333 334445677788888888875 68999974 344
Q ss_pred hHHHHHHhhhcCC--Cc----EEEeecCCCCCCCCCCCeEEEccCChHHHHHHHHHHHH
Q 002371 103 MAHVLSHLANELQ--VP----LLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVS 155 (930)
Q Consensus 103 ~~~av~~~~~~~~--vp----~is~~a~~~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~ 155 (930)
.+..+...+.+.+ || ++++.... ......|-+-....+...++...++.+.
T Consensus 188 ~a~g~~~al~~~g~~vP~di~vvg~d~~~--~~~~~~p~lttv~~~~~~~g~~a~~~l~ 244 (277)
T 3cs3_A 188 MAIGVYKYVAETNYQMGKDIRIIGFDNSE--LGAFVQPRLATIAYSKHRWGMVAAEKII 244 (277)
T ss_dssp HHHHHHHHHTTSSCCBTTTEEEECSSCCH--HHHHSSSCCBEEECCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCcEEEEEeCCcH--HHhccCCceeEEecCHHHHHHHHHHHHH
Confidence 5566666666665 34 45443221 1111123333344555666666666643
No 444
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=22.99 E-value=2.8e+02 Score=23.38 Aligned_cols=58 Identities=14% Similarity=0.045 Sum_probs=38.9
Q ss_pred chHHHHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCCceEEEEEcc--hhhHHHHHHHHHHcC
Q 002371 174 NGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY--SRTGLMVFDVAQRLG 242 (930)
Q Consensus 174 ~~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~--~~~~~~~~~~a~~~g 242 (930)
.....+.+.+++.|..+... .+....+..++...+|+|++... ..++..++++.++..
T Consensus 18 ~~~~~l~~~L~~~~~~v~~~-----------~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~ 77 (137)
T 3hdg_A 18 DAREWLSTIISNHFPEVWSA-----------GDGEEGERLFGLHAPDVIITDIRMPKLGGLEMLDRIKAGG 77 (137)
T ss_dssp HHHHHHHHHHHTTCSCEEEE-----------SSHHHHHHHHHHHCCSEEEECSSCSSSCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCcEEEEE-----------CCHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHhcC
Confidence 46677888888866655421 12234455566678999999643 456888899888865
No 445
>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A 1z17_A 1z18_A 2liv_A
Probab=22.76 E-value=1.9e+02 Score=29.56 Aligned_cols=80 Identities=10% Similarity=-0.014 Sum_probs=49.6
Q ss_pred EEEEEEecC----CcCcchHHHHHHHHHh-------cCcEEEEEEecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchh
Q 002371 161 EVIAIFNDD----DQGRNGVTALGDKLAE-------IRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSR 229 (930)
Q Consensus 161 ~vaii~~d~----~~g~~~~~~~~~~l~~-------~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~ 229 (930)
+|+++.+.. .+|......+..++++ .|.++.....-. . .+.......++++.+.+.++||......
T Consensus 4 ~IG~~~p~~g~~~~~~~~~~~g~~~a~~~iN~~ggi~G~~l~l~~~d~-~--~~~~~~~~~~~~l~~~~v~~iig~~~s~ 80 (346)
T 1usg_A 4 KVAVVGAMSGPIAQWGDMEFNGARQAIKDINAKGGIKGDKLVGVEYDD-A--CDPKQAVAVANKIVNDGIKYVIGHLCSS 80 (346)
T ss_dssp EEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHTTTBTTBCEEEEEEEC-T--TCHHHHHHHHHHHHHTTCCEEECCSSHH
T ss_pred EEEEEeCCCCcchhcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEeCC-C--CCHHHHHHHHHHHHhCCCCEEEcCCCcH
Confidence 677887653 2566677777777776 455543332222 2 2244555667777778899988665555
Q ss_pred hHHHHHHHHHHcCC
Q 002371 230 TGLMVFDVAQRLGM 243 (930)
Q Consensus 230 ~~~~~~~~a~~~g~ 243 (930)
....+...+.+.++
T Consensus 81 ~~~~~~~~~~~~~i 94 (346)
T 1usg_A 81 STQPASDIYEDEGI 94 (346)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHCCC
Confidence 55566677777664
No 446
>3fst_A 5,10-methylenetetrahydrofolate reductase; TIM barrel, flavin, amino-acid biosynthesis, FAD, flavoprotein, methionine biosynthesis, NAD; HET: FAD MRY; 1.65A {Escherichia coli k-12} PDB: 3fsu_A* 1zp3_A* 1zpt_A* 1zrq_A* 1zp4_A* 2fmn_A* 2fmo_A* 1b5t_A*
Probab=22.67 E-value=6.2e+02 Score=25.71 Aligned_cols=164 Identities=16% Similarity=0.089 Sum_probs=89.2
Q ss_pred EEEEEEecCCCC-hHHHH-HHHHHHHhcCcEEEE---ccCCh--hhHHHHH-HhhhcCCCcEEEe-ecCCCCCCCCCCCe
Q 002371 65 KLSITMHDAKFN-GFLSI-MGALQFMETDTLAIV---GPQSA--VMAHVLS-HLANELQVPLLSF-TALDPTLSPLQYPF 135 (930)
Q Consensus 65 ~l~l~~~D~~~~-~~~a~-~~a~~li~~~v~aii---Gp~~S--~~~~av~-~~~~~~~vp~is~-~a~~~~ls~~~~~~ 135 (930)
.+.+.+.=.+.. ....+ ..+.+|..-++.+|- |+..| ..+..++ .+.++.+++.+.. ++.+
T Consensus 24 ~~S~E~fPPk~~~~~~~l~~~~~~l~~l~p~fvsVT~gagg~~r~~t~~~a~~i~~~~g~~~v~Hltc~~---------- 93 (304)
T 3fst_A 24 NVSFEFFPPRTSEMEQTLWNSIDRLSSLKPKFVSVTYGANSGERDRTHSIIKGIKDRTGLEAAPHLTCID---------- 93 (304)
T ss_dssp EEEEEECCCCSHHHHHHHHHHHHHHHTTCCSEEEECCCTTSSCHHHHHHHHHHHHHHHCCCEEEEEESTT----------
T ss_pred EEEEEEcCCCCccHHHHHHHHHHHHhcCCCCEEEEeeCCCCcchhHHHHHHHHHHHHhCCCeeEEeecCC----------
Confidence 455555444432 22222 344555444655543 44444 3444444 4566678776643 2221
Q ss_pred EEEccCChHHHHHHHHHHHHHcCCcEEEEEEecCCc----CcchHHHHHHHHHhc-CcEEEEEEecCCCC-CC--ChhHH
Q 002371 136 FVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQ----GRNGVTALGDKLAEI-RCKISYKSALPPDQ-SV--TETDV 207 (930)
Q Consensus 136 ~fr~~p~~~~~~~ai~~~l~~~~w~~vaii~~d~~~----g~~~~~~~~~~l~~~-g~~i~~~~~~~~~~-~~--~~~d~ 207 (930)
.+....+....-+...|.+.|-++.-|.+- +......+.+.+++. +.+|. ...||.+. .. ...|+
T Consensus 94 ------~~~~~l~~~L~~~~~~GI~nILaLrGDpp~~~~~~~~~A~dLv~~ir~~~~f~Ig-vA~yPE~Hp~a~~~~~d~ 166 (304)
T 3fst_A 94 ------ATPDELRTIARDYWNNGIRHIVALRGDLPPGSGKPEMYASDLVTLLKEVADFDIS-VAAYPEVHPEAKSAQADL 166 (304)
T ss_dssp ------SCHHHHHHHHHHHHHTTCCEEEEECCCCC------CCCHHHHHHHHHHHCCCEEE-EEECTTCCTTCSCHHHHH
T ss_pred ------CCHHHHHHHHHHHHHCCCCEEEEecCCCCCCCCCCCCCHHHHHHHHHHcCCCeEE-EEeCCCcCCCCCCHHHHH
Confidence 233444555555678999999999766332 223344555555543 55654 44565431 01 12345
Q ss_pred HHHHHHHhcCCceEEEEE--cchhhHHHHHHHHHHcCCCCC
Q 002371 208 RNELVKVRMMEARVIVVH--GYSRTGLMVFDVAQRLGMMDS 246 (930)
Q Consensus 208 ~~~l~~l~~~~~~viv~~--~~~~~~~~~~~~a~~~g~~~~ 246 (930)
....+|+. +++|.++.- .+.+....++..+++.|...+
T Consensus 167 ~~Lk~Kvd-AGAdf~iTQ~ffD~~~~~~f~~~~r~~Gi~vP 206 (304)
T 3fst_A 167 LNLKRKVD-AGANRAITQFFFDVESYLRFRDRCVSAGIDVE 206 (304)
T ss_dssp HHHHHHHH-HTCCEEEECCCSCHHHHHHHHHHHHHTTCCSC
T ss_pred HHHHHHHH-cCCCEEEeCccCCHHHHHHHHHHHHhcCCCCc
Confidence 55555554 789998874 445677888999999997544
No 447
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=22.66 E-value=3.1e+02 Score=23.75 Aligned_cols=58 Identities=10% Similarity=0.160 Sum_probs=40.8
Q ss_pred chHHHHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCCceEEEEEcc--hhhHHHHHHHHHHcC
Q 002371 174 NGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY--SRTGLMVFDVAQRLG 242 (930)
Q Consensus 174 ~~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~--~~~~~~~~~~a~~~g 242 (930)
.....+...+++.|.++.. . .+....+..++...+|+|++... ..++..++++.++..
T Consensus 18 ~~~~~l~~~L~~~g~~v~~---~--------~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~ 77 (154)
T 2rjn_A 18 PILNSLKRLIKRLGCNIIT---F--------TSPLDALEALKGTSVQLVISDMRMPEMGGEVFLEQVAKSY 77 (154)
T ss_dssp HHHHHHHHHHHTTTCEEEE---E--------SCHHHHHHHHTTSCCSEEEEESSCSSSCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCeEEE---e--------CCHHHHHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHHhC
Confidence 4677888888888887652 1 12345567777788999999754 346778888888754
No 448
>3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A*
Probab=22.41 E-value=2.9e+02 Score=28.64 Aligned_cols=90 Identities=18% Similarity=0.164 Sum_probs=67.0
Q ss_pred ccCChHHHHHHHHHHHHHcCCcEEEEEEecCCcCcchHHHHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCC
Q 002371 139 TAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMME 218 (930)
Q Consensus 139 ~~p~~~~~~~ai~~~l~~~~w~~vaii~~d~~~g~~~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~ 218 (930)
..|+....++.+.++++..+.++|.|..+.+. ..+.|+++|+..+++++. +++. .++++..--+.
T Consensus 260 ClPSle~I~rqIk~~vk~~~lksVFIATDa~~----~~~ELk~~L~~~~v~vv~---~~pe--------~a~ID~~I~~~ 324 (362)
T 3zy2_A 260 CSPSKQQILEQIVEKVGSIGAKSVFVASDKDH----MIDEINEALKPYEIEAHR---QEPD--------DMYTSLAIMGR 324 (362)
T ss_dssp HSCCHHHHHHHHHHHHHHHTCSEEEEEESSCC----CHHHHHHHHGGGTCCEEC---CSSC--------CHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHhcCCcEEEEecCCHH----HHHHHHHHhhccCceEEE---eCCc--------hhHHHHHHHHh
Confidence 35888888899999999999999888874333 578999999887877652 3222 35666666678
Q ss_pred ceEEEEEcchhhHHHHHHHHHHcCC
Q 002371 219 ARVIVVHGYSRTGLMVFDVAQRLGM 243 (930)
Q Consensus 219 ~~viv~~~~~~~~~~~~~~a~~~g~ 243 (930)
+|.+|-.+...-...+.++=.-.|+
T Consensus 325 A~~FIGN~~SSFSa~I~rERdi~G~ 349 (362)
T 3zy2_A 325 ADLFVGNCVSTFSHIVKRERDHAGQ 349 (362)
T ss_dssp SSEEEECTTCHHHHHHHHHHHHSSS
T ss_pred CCEeecCccccccHHHHHHHHhcCC
Confidence 9999988888777777766666673
No 449
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=22.34 E-value=2.3e+02 Score=25.94 Aligned_cols=68 Identities=13% Similarity=0.018 Sum_probs=44.4
Q ss_pred chHHHHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCCceEEEEE--cchhhHHHHHHHHHHcCCCCCceEEE
Q 002371 174 NGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVH--GYSRTGLMVFDVAQRLGMMDSGYVWI 251 (930)
Q Consensus 174 ~~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~--~~~~~~~~~~~~a~~~g~~~~~~~~i 251 (930)
.....+...+++.|..|.. .. +....+..++...+|+|++. +...++..++++.++..- .-.+.+
T Consensus 18 ~~~~~l~~~L~~~g~~v~~---~~--------~~~~al~~~~~~~~dlvl~D~~lp~~~g~~~~~~l~~~~~--~~~ii~ 84 (184)
T 3rqi_A 18 VFAGTLARGLERRGYAVRQ---AH--------NKDEALKLAGAEKFEFITVXLHLGNDSGLSLIAPLCDLQP--DARILV 84 (184)
T ss_dssp HHHHHHHHHHHHTTCEEEE---EC--------SHHHHHHHHTTSCCSEEEECSEETTEESHHHHHHHHHHCT--TCEEEE
T ss_pred HHHHHHHHHHHHCCCEEEE---eC--------CHHHHHHHHhhCCCCEEEEeccCCCccHHHHHHHHHhcCC--CCCEEE
Confidence 4677888888888876532 11 23445677777889999985 344567888888887542 223444
Q ss_pred EeC
Q 002371 252 ATT 254 (930)
Q Consensus 252 ~~~ 254 (930)
.+.
T Consensus 85 lt~ 87 (184)
T 3rqi_A 85 LTG 87 (184)
T ss_dssp EES
T ss_pred EeC
Confidence 444
No 450
>1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4
Probab=22.19 E-value=2.9e+02 Score=27.33 Aligned_cols=87 Identities=14% Similarity=0.034 Sum_probs=60.2
Q ss_pred HHHHHHHHHcCCcEEEEEEecCCcCcchHHHHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCCceEEEEEcc
Q 002371 148 SAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY 227 (930)
Q Consensus 148 ~ai~~~l~~~~w~~vaii~~d~~~g~~~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~ 227 (930)
..+++.....|.+.+-++. ++.|-.+..+.+...-+..++.|.....+ . +++ ++...+..++|.|++...
T Consensus 68 ~~~A~~~~~~GA~~isvlt-~~~~f~G~~~~l~~i~~~v~lPvl~kdfI-~------d~~--qi~~a~~~GAD~VlL~~~ 137 (254)
T 1vc4_A 68 VEAALAYARGGARAVSVLT-EPHRFGGSLLDLKRVREAVDLPLLRKDFV-V------DPF--MLEEARAFGASAALLIVA 137 (254)
T ss_dssp HHHHHHHHHTTCSEEEEEC-CCSSSCCCHHHHHHHHHHCCSCEEEESCC-C------SHH--HHHHHHHTTCSEEEEEHH
T ss_pred HHHHHHHHHcCCCEEEEec-chhhhccCHHHHHHHHHhcCCCEEECCcC-C------CHH--HHHHHHHcCCCEEEECcc
Confidence 4566777788999998875 45555566677777666677776543322 1 122 466688899999999653
Q ss_pred h--hhHHHHHHHHHHcCCC
Q 002371 228 S--RTGLMVFDVAQRLGMM 244 (930)
Q Consensus 228 ~--~~~~~~~~~a~~~g~~ 244 (930)
. .....++..++++||.
T Consensus 138 ~l~~~l~~l~~~a~~lGl~ 156 (254)
T 1vc4_A 138 LLGELTGAYLEEARRLGLE 156 (254)
T ss_dssp HHGGGHHHHHHHHHHHTCE
T ss_pred chHHHHHHHHHHHHHCCCe
Confidence 2 6788888888899974
No 451
>4i1d_A ABC transporter substrate-binding protein; structural genomics, PSI-biology; 2.20A {Bradyrhizobium japonicum}
Probab=22.17 E-value=6e+02 Score=25.41 Aligned_cols=72 Identities=8% Similarity=-0.023 Sum_probs=43.3
Q ss_pred CCCHHHHHHHHHcCCcEEEEccchhhHHHHhcCcceEEeCCccccCccEEEecCCCcchhHHHHHHHhcccc
Q 002371 718 LGSPEEYAIALENRTVAAVVDERPYIDLFLSDHCQFSVRGQEFTKSGWGFAFPRDSPLAIDMSTAILTLSEN 789 (930)
Q Consensus 718 ~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~k~spl~~~~n~~i~~l~e~ 789 (930)
..+..+..+.+.+|++++.+.....+........++.++-+--.....+++++|+++-.+.--+.|..+...
T Consensus 184 ~~~~~~~~~~~~~Ge~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~k~s~~~~~A~~fi~fl~s~ 255 (324)
T 4i1d_A 184 WTSGAQSAQLLNDGEVDMEMAWNGRVSAVAKEGAKVSFTYNQGILQSTSLCILKGAPNLETAVKFLNEAVDP 255 (324)
T ss_dssp ECSHHHHHHHHHHTSCSEEEEEHHHHHHHHHTTCSEEEEEEEEEEEEEEEEEBTTCTTHHHHHHHHHHHTCH
T ss_pred ccCcchHHHHHhCCCEEEEecccHHHHHHHhcCCCeEEEecCeeeeccEEEEECCCCCHHHHHHHHHHHhCH
Confidence 346778888999999987776544443333333344333221112234788999998666666666665543
No 452
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=22.14 E-value=1.3e+02 Score=29.95 Aligned_cols=66 Identities=9% Similarity=0.043 Sum_probs=47.4
Q ss_pred CCcEEEEEEec-CCcCcchHHHHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCCceEEEEEcch
Q 002371 158 GWGEVIAIFND-DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS 228 (930)
Q Consensus 158 ~w~~vaii~~d-~~~g~~~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~ 228 (930)
.-++|+++..+ ++|.......+.+++++.|.++.... . . .+.......++.+.+.++|.||+....
T Consensus 7 ~~~~Igvi~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~-~--~--~~~~~~~~~~~~l~~~~vdgiI~~~~~ 73 (288)
T 2qu7_A 7 RSNIIAFIVPDQNPFFTEVLTEISHECQKHHLHVAVAS-S--E--ENEDKQQDLIETFVSQNVSAIILVPVK 73 (288)
T ss_dssp CEEEEEEEESSCCHHHHHHHHHHHHHHGGGTCEEEEEE-C--T--TCHHHHHHHHHHHHHTTEEEEEECCSS
T ss_pred CCCEEEEEECCCCchHHHHHHHHHHHHHHCCCEEEEEe-C--C--CCHHHHHHHHHHHHHcCccEEEEecCC
Confidence 34578888864 66677788899999999999887532 1 1 224455667888888899999987543
No 453
>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1
Probab=21.71 E-value=1.6e+02 Score=28.69 Aligned_cols=63 Identities=13% Similarity=0.063 Sum_probs=46.1
Q ss_pred cEEEEEEec--CCcCcchHHHHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCCceEEEEEcc
Q 002371 160 GEVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY 227 (930)
Q Consensus 160 ~~vaii~~d--~~~g~~~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~ 227 (930)
+.|+++..+ ++|.......+.+++++.|..+..... . .+...-...++.+.+.++|.+|+...
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~-~----~~~~~~~~~~~~l~~~~vdgiI~~~~ 67 (255)
T 1byk_A 3 KVVAIIVTRLDSLSENLAVQTMLPAFYEQGYDPIMMES-Q----FSPQLVAEHLGVLKRRNIDGVVLFGF 67 (255)
T ss_dssp CEEEEEESCTTCHHHHHHHHHHHHHHHHHTCEEEEEEC-T----TCHHHHHHHHHHHHTTTCCEEEEECC
T ss_pred CEEEEEeCCCCCccHHHHHHHHHHHHHHcCCEEEEEeC-C----CcHHHHHHHHHHHHhcCCCEEEEecC
Confidence 568888753 567777888999999999998765421 1 12445566788888889999998764
No 454
>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A
Probab=21.18 E-value=4.8e+02 Score=25.54 Aligned_cols=86 Identities=15% Similarity=0.209 Sum_probs=54.2
Q ss_pred HHHHHHHHHHcCCcEEEEE---------------EecCCcCcchHHHHHHHHHhcC--cEEEEEEecCCCCCCChhHHHH
Q 002371 147 MSAIAEMVSYFGWGEVIAI---------------FNDDDQGRNGVTALGDKLAEIR--CKISYKSALPPDQSVTETDVRN 209 (930)
Q Consensus 147 ~~ai~~~l~~~~w~~vaii---------------~~d~~~g~~~~~~~~~~l~~~g--~~i~~~~~~~~~~~~~~~d~~~ 209 (930)
+..+++.+...|..++.++ +..++-|+.-++.+.+.+++.+ ++|.. ++.. .+.++...
T Consensus 40 G~~va~~La~~Gvg~i~lvD~d~v~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~---~~~~--~~~~~~~~ 114 (251)
T 1zud_1 40 GTPAALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLNPDIQLTA---LQQR--LTGEALKD 114 (251)
T ss_dssp HHHHHHHHHHTTCSEEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEE---ECSC--CCHHHHHH
T ss_pred HHHHHHHHHHcCCCeEEEEeCCCcccccCCCCccCChhhCCCHHHHHHHHHHHHHCCCCEEEE---Eecc--CCHHHHHH
Confidence 4678888888999999987 3334557788899999998864 44443 2222 22344443
Q ss_pred HHHHHhcCCceEEEEEcchhhHHHHHHHH-HHcC
Q 002371 210 ELVKVRMMEARVIVVHGYSRTGLMVFDVA-QRLG 242 (930)
Q Consensus 210 ~l~~l~~~~~~viv~~~~~~~~~~~~~~a-~~~g 242 (930)
.+. +.|+||.+.........+.++ .+.|
T Consensus 115 ~~~-----~~DvVi~~~d~~~~r~~l~~~~~~~~ 143 (251)
T 1zud_1 115 AVA-----RADVVLDCTDNMATRQEINAACVALN 143 (251)
T ss_dssp HHH-----HCSEEEECCSSHHHHHHHHHHHHHTT
T ss_pred HHh-----cCCEEEECCCCHHHHHHHHHHHHHhC
Confidence 333 479999877665555555444 4434
No 455
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=20.98 E-value=2.8e+02 Score=22.78 Aligned_cols=57 Identities=14% Similarity=0.028 Sum_probs=37.4
Q ss_pred chHHHHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCCceEEEEEcc--hhhHHHHHHHHHHc
Q 002371 174 NGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY--SRTGLMVFDVAQRL 241 (930)
Q Consensus 174 ~~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~--~~~~~~~~~~a~~~ 241 (930)
.....+...++..|..+.. ... .. ..+..++...+|++++... ..++..++++.++.
T Consensus 12 ~~~~~l~~~L~~~~~~v~~---~~~-----~~---~a~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~ 70 (124)
T 1mb3_A 12 LNMKLFHDLLEAQGYETLQ---TRE-----GL---SALSIARENKPDLILMDIQLPEISGLEVTKWLKED 70 (124)
T ss_dssp HHHHHHHHHHHHTTCEEEE---ESC-----HH---HHHHHHHHHCCSEEEEESBCSSSBHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCcEEEE---eCC-----HH---HHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHcC
Confidence 4667788888888887642 121 22 3344555567999998643 34677888888874
No 456
>2nx9_A Oxaloacetate decarboxylase 2, subunit alpha; carboxyltransferase structure, B enzymes, Zn2+ binding site, TIM-barrel fold, lyase; 1.70A {Vibrio cholerae}
Probab=20.94 E-value=6e+02 Score=27.66 Aligned_cols=89 Identities=4% Similarity=-0.059 Sum_probs=52.3
Q ss_pred HHHHHHHcCCcEEEEEEecCCcCcchHHHHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCCceEEEEE----
Q 002371 150 IAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVH---- 225 (930)
Q Consensus 150 i~~~l~~~~w~~vaii~~d~~~g~~~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~---- 225 (930)
-++.....|...|.++..-++. .......+.+++.|..+.....+..+...+.+.+...++++.+.+++.|.++
T Consensus 105 ~v~~a~~~Gvd~i~if~~~sd~--~ni~~~i~~ak~~G~~v~~~i~~~~~~~~~~e~~~~~a~~l~~~Gad~I~l~DT~G 182 (464)
T 2nx9_A 105 FVERAVKNGMDVFRVFDAMNDV--RNMQQALQAVKKMGAHAQGTLCYTTSPVHNLQTWVDVAQQLAELGVDSIALKDMAG 182 (464)
T ss_dssp HHHHHHHTTCCEEEECCTTCCT--HHHHHHHHHHHHTTCEEEEEEECCCCTTCCHHHHHHHHHHHHHTTCSEEEEEETTS
T ss_pred HHHHHHhCCcCEEEEEEecCHH--HHHHHHHHHHHHCCCEEEEEEEeeeCCCCCHHHHHHHHHHHHHCCCCEEEEcCCCC
Confidence 3334445566666665433332 3344555566677777655444433322345666777777777888877774
Q ss_pred -cchhhHHHHHHHHHH
Q 002371 226 -GYSRTGLMVFDVAQR 240 (930)
Q Consensus 226 -~~~~~~~~~~~~a~~ 240 (930)
+.|..+..+++..++
T Consensus 183 ~~~P~~v~~lv~~l~~ 198 (464)
T 2nx9_A 183 ILTPYAAEELVSTLKK 198 (464)
T ss_dssp CCCHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHH
Confidence 455677777777765
No 457
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=20.86 E-value=1.6e+02 Score=20.30 Aligned_cols=20 Identities=5% Similarity=0.029 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHhhhc
Q 002371 832 ACFLALLAYFCLMLRQFKKY 851 (930)
Q Consensus 832 g~~lallvf~~e~~~~~~~~ 851 (930)
|+++.+++.+.-.+|.+||+
T Consensus 20 Gvll~vi~~l~~~~~~RRR~ 39 (44)
T 2jwa_A 20 GILLVVVLGVVFGILIKRRQ 39 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhheehhh
Confidence 33333333334444444443
No 458
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=20.46 E-value=2.8e+02 Score=23.22 Aligned_cols=59 Identities=8% Similarity=0.059 Sum_probs=36.4
Q ss_pred chHHHHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcC-CceEEEEE--cchhhHHHHHHHHHHcC
Q 002371 174 NGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMM-EARVIVVH--GYSRTGLMVFDVAQRLG 242 (930)
Q Consensus 174 ~~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~-~~~viv~~--~~~~~~~~~~~~a~~~g 242 (930)
.....+...+++.|...+.. .. +....+..+... .+|+|++. +...++..++++.++..
T Consensus 16 ~~~~~l~~~L~~~g~~~v~~--~~--------~~~~a~~~~~~~~~~dlvi~D~~~p~~~g~~~~~~lr~~~ 77 (129)
T 3h1g_A 16 TMRRIIKNTLSRLGYEDVLE--AE--------HGVEAWEKLDANADTKVLITDWNMPEMNGLDLVKKVRSDS 77 (129)
T ss_dssp HHHHHHHHHHHHTTCCCEEE--ES--------SHHHHHHHHHHCTTCCEEEECSCCSSSCHHHHHHHHHTST
T ss_pred HHHHHHHHHHHHcCCcEEEE--eC--------CHHHHHHHHHhCCCCCEEEEeCCCCCCCHHHHHHHHHhcC
Confidence 46677888888888753221 11 122344455443 68998884 34456788888888754
No 459
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=20.45 E-value=6.7e+02 Score=25.27 Aligned_cols=98 Identities=16% Similarity=0.123 Sum_probs=60.8
Q ss_pred cEEEEccCChhhHHHHHHhhhcCCCcEEEeecCCCCCCCCCCCeEEEcc---C--C----hHHHHHHHHHHHHHcC----
Q 002371 92 TLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTA---P--N----DLYLMSAIAEMVSYFG---- 158 (930)
Q Consensus 92 v~aiiGp~~S~~~~av~~~~~~~~vp~is~~a~~~~ls~~~~~~~fr~~---p--~----~~~~~~ai~~~l~~~~---- 158 (930)
+.-++||-..+...+++.+..+.++=++....+.+..+ --||+|+. + . ....-+++.++.+.++
T Consensus 12 vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~---g~Ffmr~~~~~~~~~~~~~~~~L~~~f~~la~~~~m~~~ 88 (292)
T 3lou_A 12 VLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFDDDLS---ARFFVRCVFHATDDADALRVDALRREFEPIAERFRMQWA 88 (292)
T ss_dssp EEEEEEESCSCHHHHHHHHHHHTTEEEEEEEEEEETTT---TEEEEEEEEEECC----CCHHHHHHHHHHHHHHHTCEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHCCCCEEeeEEEecCCC---CceEEEEEEEccCcccCCCHHHHHHHHHHHHHhcCcEEE
Confidence 67788999999999999999999988887555432221 23566763 2 1 2233345555555543
Q ss_pred ------CcEEEEEEecCCcCcchHHHHHHHHHhc--CcEEEEEEe
Q 002371 159 ------WGEVIAIFNDDDQGRNGVTALGDKLAEI--RCKISYKSA 195 (930)
Q Consensus 159 ------w~~vaii~~d~~~g~~~~~~~~~~l~~~--g~~i~~~~~ 195 (930)
.++++++.+.. |. ..+++.++.+.. +.+|+....
T Consensus 89 l~~~~~~~ri~vl~Sg~--g~-~l~~ll~~~~~g~l~~~i~~Vis 130 (292)
T 3lou_A 89 IHDVAARPKVLIMVSKL--EH-CLADLLFRWKMGELKMDIVGIVS 130 (292)
T ss_dssp EEETTSCCEEEEEECSC--CH-HHHHHHHHHHHTSSCCEEEEEEE
T ss_pred eeccCCCCEEEEEEcCC--Cc-CHHHHHHHHHcCCCCcEEEEEEe
Confidence 35899988655 32 455555555443 456665544
No 460
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=20.32 E-value=3.4e+02 Score=26.49 Aligned_cols=118 Identities=9% Similarity=-0.048 Sum_probs=66.4
Q ss_pred eEEEeEEeecC-----CCcch-HHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhc--CcEEEEc
Q 002371 26 VLNVGAIFSFG-----TVNGQ-VSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMET--DTLAIVG 97 (930)
Q Consensus 26 ~I~IG~~~~l~-----~~~G~-~~~~a~~lAve~iN~~ggil~g~~l~l~~~D~~~~~~~a~~~a~~li~~--~v~aiiG 97 (930)
.=+||++.... ..... .-..|++-|+++.+ + + .....+ .....+...+...+.++++. ++.+|+.
T Consensus 114 ~~~i~~i~~~~~~~~~~~~~~~~R~~gf~~~l~~~g----~-~-~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~ai~~ 186 (276)
T 2h0a_A 114 GPIFAIAVEEEPDRAFRRTVFAERMAGFQEALKEAG----R-P-FSPDRL-YITRHSQEGGRLALRHFLEKASPPLNVFA 186 (276)
T ss_dssp SCEEEEEECCSCCC---CCHHHHHHHHHHHHHHHTT----C-C-CCGGGE-EEECSSHHHHHHHHHHHHTTCCSSEEEEC
T ss_pred CCeEEEEecCcccccccchhHHHHHHHHHHHHHHcC----C-C-CChHHe-eecCCChHHHHHHHHHHHhCCCCCCEEEE
Confidence 34788887654 34456 66788888887742 2 1 110111 12234667777888888876 5999996
Q ss_pred cCChhhHHHHHHhhhcCC--Cc----EEEeecCCCCCCCCCCCeEEEccCChHHHHHHHHHHHH
Q 002371 98 PQSAVMAHVLSHLANELQ--VP----LLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVS 155 (930)
Q Consensus 98 p~~S~~~~av~~~~~~~~--vp----~is~~a~~~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~ 155 (930)
. +...+..+...+.+.+ || ++++.... ... ... +-....+...++...++.+.
T Consensus 187 ~-~d~~a~g~~~al~~~g~~vP~di~vvg~d~~~--~~~-~~~-lttv~~~~~~~g~~a~~~l~ 245 (276)
T 2h0a_A 187 G-ADQVALGVLEEAVRLGLTPGRDVRVLGFDGHP--FAE-EAG-LSTIAQPVEAMGARAAQLLL 245 (276)
T ss_dssp S-SHHHHHHHHHHHHTTSCTTTTSEEEEEESCCT--HHH-HHT-CEEEECCHHHHHHHHHHHHH
T ss_pred C-CcHHHHHHHHHHHHcCCCCCCCeEEEEeCCCc--hhh-hcc-eeEecCCHHHHHHHHHHHHH
Confidence 3 4455666666666655 44 66654332 111 111 33444555566666666543
No 461
>3ctp_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens}
Probab=20.19 E-value=1.5e+02 Score=30.36 Aligned_cols=68 Identities=3% Similarity=-0.096 Sum_probs=46.0
Q ss_pred HHHcCCcEEEEEEec--CCcCcchHHHHHHHHHhcCcEEEEEEecCCCCCCChhHHHHHHHHHhcCCceEEEEEcc
Q 002371 154 VSYFGWGEVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY 227 (930)
Q Consensus 154 l~~~~w~~vaii~~d--~~~g~~~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~ 227 (930)
+..-.-+.|+++..+ ++|.....+.+.+++++.|..+..... . .+.......++.+...+.|.|| ...
T Consensus 55 l~~~~~~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~-~----~~~~~~~~~~~~l~~~~vdgiI-~~~ 124 (330)
T 3ctp_A 55 MFTKNSKTIGLMVPNISNPFFNQMASVIEEYAKNKGYTLFLCNT-D----DDKEKEKTYLEVLQSHRVAGII-ASR 124 (330)
T ss_dssp -----CCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEEC-T----TCHHHHHHHHHHHHHTTCSEEE-EET
T ss_pred hhcCCCCEEEEEeCCCCCcHHHHHHHHHHHHHHHCCCEEEEEeC-C----CChHHHHHHHHHHHhCCCCEEE-ECC
Confidence 333344689999864 567777888999999999998875421 1 2244556677888888999998 643
No 462
>4f2g_A Otcase 1, ornithine carbamoyltransferase 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}
Probab=20.19 E-value=7e+02 Score=25.39 Aligned_cols=132 Identities=14% Similarity=0.198 Sum_probs=79.2
Q ss_pred EEEeEEeecCCCcchHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhc--CcEEEEccCChhhH
Q 002371 27 LNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMET--DTLAIVGPQSAVMA 104 (930)
Q Consensus 27 I~IG~~~~l~~~~G~~~~~a~~lAve~iN~~ggil~g~~l~l~~~D~~~~~~~a~~~a~~li~~--~v~aiiGp~~S~~~ 104 (930)
-.|+.+|--.+ ..-+.+++.|+.++ +|..+.+...|++-.-.+.+.-+.+-++. .+.++=.+. .
T Consensus 46 k~la~lF~e~S---TRTR~SFE~A~~~L-------Gg~~i~l~~~~ss~~kgEsl~DTarvls~~~D~iviR~~~----~ 111 (309)
T 4f2g_A 46 RTLAMIFEKSS---TRTRLSFEAGIFQL-------GGHAVFMSTRDTQLGRGEPVEDSAQVISRMVDIIMIRTFE----Q 111 (309)
T ss_dssp CEEEEEESSCC---HHHHHHHHHHHHHT-------TCEEEEECCSSCEETBEECHHHHHHHHHHHCSEEEEECSC----H
T ss_pred ceEEEEecCCC---hhhHhhHHHHHHHc-------CCeEEEcCcccccCCCCCCHHHHHHHHHHhCCEEEEecCC----H
Confidence 35788886655 46788999999985 45555554444332222223333333333 333333543 2
Q ss_pred HHHHHhhhcCCCcEEEeecCCCCCCCCCCCeEEEccCChHHHHHHHHHHH---HHcC---CcEEEEEEecCCcCcchHHH
Q 002371 105 HVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMV---SYFG---WGEVIAIFNDDDQGRNGVTA 178 (930)
Q Consensus 105 ~av~~~~~~~~vp~is~~a~~~~ls~~~~~~~fr~~p~~~~~~~ai~~~l---~~~~---w~~vaii~~d~~~g~~~~~~ 178 (930)
.++..+++..+||+|.-+ + +...| .+++++++ +++| ..+|+++.+ +...+..
T Consensus 112 ~~~~~lA~~~~vPVINag-~-----~~~HP------------tQaLaDl~Ti~e~~g~l~glkva~vGD----~~~va~S 169 (309)
T 4f2g_A 112 DIIQRFAENSRVPVINGL-T-----NEYHP------------CQVLADIFTYYEHRGPIRGKTVAWVGD----ANNMLYT 169 (309)
T ss_dssp HHHHHHHHTCSSCEEEEE-C-----SSCCH------------HHHHHHHHHHHHHHSCCTTCEEEEESC----CCHHHHH
T ss_pred HHHHHHHHhCCCCEEECC-C-----CccCc------------HHHHHHHHHHHHHhCCCCCCEEEEECC----CcchHHH
Confidence 344566777899999754 2 22233 35666653 3444 467777753 3568889
Q ss_pred HHHHHHhcCcEEEEEE
Q 002371 179 LGDKLAEIRCKISYKS 194 (930)
Q Consensus 179 ~~~~l~~~g~~i~~~~ 194 (930)
+...+...|.++....
T Consensus 170 l~~~~~~~G~~v~~~~ 185 (309)
T 4f2g_A 170 WIQAARILDFKLQLST 185 (309)
T ss_dssp HHHHHHHHTCEEEEEC
T ss_pred HHHHHHHcCCEEEEEC
Confidence 9999999999877654
No 463
>3r7f_A Aspartate carbamoyltransferase; aspartate transcarbamoylase, carbamoyl phosphate, transferas catalytic cycle; 2.10A {Bacillus subtilis} PDB: 3r7d_A 3r7l_A* 2at2_A
Probab=20.08 E-value=6.8e+02 Score=25.40 Aligned_cols=135 Identities=12% Similarity=0.150 Sum_probs=80.9
Q ss_pred EEEeEEeecCCCcchHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhc-CcEEEE--ccCChhh
Q 002371 27 LNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMET-DTLAIV--GPQSAVM 103 (930)
Q Consensus 27 I~IG~~~~l~~~~G~~~~~a~~lAve~iN~~ggil~g~~l~l~~~D~~~~~~~a~~~a~~li~~-~v~aii--Gp~~S~~ 103 (930)
-.|+.+|--.+ ..-+.+++.|+.++ +|..+.+...+++-.-.+.+.-+.+-++. ++++|+ .+.. +.
T Consensus 37 k~la~lF~e~S---TRTR~SFE~A~~~L-------Gg~~i~l~~~~ss~~kgEsl~DTarvLs~~~~D~iviR~~~~-~~ 105 (304)
T 3r7f_A 37 KFAANLFFEPS---TRTRFSFEVAEKKL-------GMNVLNLDGTSTSVQKGETLYDTIRTLESIGVDVCVIRHSED-EY 105 (304)
T ss_dssp CEEEEEESSCC---SHHHHHHHHHHHHT-------TCEEEEEETTSTTSCSSSCHHHHHHHHHHHTCCEEEEECSST-TC
T ss_pred CEEEEEecCCC---hhHHHhHHHHHHHC-------CCeEEEECcccccCCCCCCHHHHHHHHHHhcCCEEEEecCCh-hH
Confidence 45788876655 36688999999985 46666665545544333444444455555 566665 4432 22
Q ss_pred HHHHHHhhhcCCCcEEEeecCCCCCCCCCCCeEEEccCChHHHHHHHHHHH---HHcC---CcEEEEEEecCCcCcchHH
Q 002371 104 AHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMV---SYFG---WGEVIAIFNDDDQGRNGVT 177 (930)
Q Consensus 104 ~~av~~~~~~~~vp~is~~a~~~~ls~~~~~~~fr~~p~~~~~~~ai~~~l---~~~~---w~~vaii~~d~~~g~~~~~ 177 (930)
+..+++..+||+|.-+.+ +...| .+++++++ +++| ..+|+++. |.-....+.
T Consensus 106 ---~~~la~~~~vPVINagdg-----~~~HP------------tQaLaDl~Ti~e~~g~l~glkva~vG--D~~~~rva~ 163 (304)
T 3r7f_A 106 ---YEELVSQVNIPILNAGDG-----CGQHP------------TQSLLDLMTIYEEFNTFKGLTVSIHG--DIKHSRVAR 163 (304)
T ss_dssp ---HHHHHHHCSSCEEESCCT-----TSCCH------------HHHHHHHHHHHHHHSCCTTCEEEEES--CCTTCHHHH
T ss_pred ---HHHHHHhCCCCEEeCCCC-----CCcCc------------HHHHHHHHHHHHHhCCCCCCEEEEEc--CCCCcchHH
Confidence 334456678999973211 12223 36666653 3444 45777764 322235778
Q ss_pred HHHHHHHhcCcEEEEEE
Q 002371 178 ALGDKLAEIRCKISYKS 194 (930)
Q Consensus 178 ~~~~~l~~~g~~i~~~~ 194 (930)
.+...+...|.++....
T Consensus 164 Sl~~~~~~~G~~v~~~~ 180 (304)
T 3r7f_A 164 SNAEVLTRLGARVLFSG 180 (304)
T ss_dssp HHHHHHHHTTCEEEEES
T ss_pred HHHHHHHHcCCEEEEEC
Confidence 88888888999877653
Done!