Query 002374
Match_columns 929
No_of_seqs 236 out of 399
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 23:46:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002374.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002374hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ya0_A SMG-7 transcript varian 100.0 2.1E-75 7.3E-80 675.4 33.2 440 1-550 36-488 (497)
2 1na3_A Designed protein CTPR2; 95.2 0.043 1.5E-06 45.7 6.8 67 152-218 23-89 (91)
3 2l6j_A TPR repeat-containing p 93.8 0.15 5.1E-06 43.8 7.4 54 152-205 18-71 (111)
4 4gco_A Protein STI-1; structur 93.7 0.077 2.7E-06 48.9 5.6 63 153-215 62-124 (126)
5 4gcn_A Protein STI-1; structur 93.6 0.049 1.7E-06 50.1 4.1 51 152-202 22-72 (127)
6 3sz7_A HSC70 cochaperone (SGT) 93.4 0.11 3.8E-06 49.0 6.2 66 153-218 26-91 (164)
7 4ga2_A E3 SUMO-protein ligase 93.2 0.09 3.1E-06 49.7 5.2 68 152-219 45-112 (150)
8 3upv_A Heat shock protein STI1 93.2 0.14 4.8E-06 45.8 6.3 68 152-219 18-85 (126)
9 3upv_A Heat shock protein STI1 93.1 0.1 3.6E-06 46.7 5.4 50 153-202 53-102 (126)
10 3vtx_A MAMA; tetratricopeptide 93.1 0.13 4.3E-06 49.0 6.2 78 131-218 8-85 (184)
11 4gco_A Protein STI-1; structur 93.1 0.091 3.1E-06 48.4 5.0 68 152-219 27-94 (126)
12 3q49_B STIP1 homology and U bo 93.0 0.18 6E-06 45.3 6.7 68 152-219 23-90 (137)
13 1elw_A TPR1-domain of HOP; HOP 92.7 0.22 7.5E-06 42.5 6.6 63 153-215 53-115 (118)
14 2lni_A Stress-induced-phosphop 92.6 0.15 5.2E-06 44.8 5.6 65 153-217 65-129 (133)
15 3ma5_A Tetratricopeptide repea 92.4 0.2 7E-06 43.8 6.1 66 153-218 22-89 (100)
16 2kat_A Uncharacterized protein 92.3 0.18 6.2E-06 44.5 5.7 68 153-220 34-103 (115)
17 2fbn_A 70 kDa peptidylprolyl i 92.2 0.23 7.8E-06 48.3 6.8 84 128-221 88-171 (198)
18 2kck_A TPR repeat; tetratricop 92.0 0.16 5.4E-06 43.1 4.8 65 152-216 20-86 (112)
19 3sz7_A HSC70 cochaperone (SGT) 92.0 0.24 8.2E-06 46.6 6.5 67 153-219 60-128 (164)
20 2vyi_A SGTA protein; chaperone 91.7 0.21 7.3E-06 43.3 5.4 67 153-219 61-127 (131)
21 2v5f_A Prolyl 4-hydroxylase su 91.7 0.14 4.9E-06 45.8 4.3 68 152-220 19-93 (104)
22 2dba_A Smooth muscle cell asso 91.5 0.26 8.8E-06 44.3 5.9 62 153-214 80-141 (148)
23 1p5q_A FKBP52, FK506-binding p 91.3 0.29 1E-05 52.8 7.1 83 128-220 196-278 (336)
24 2lni_A Stress-induced-phosphop 91.3 0.3 1E-05 42.9 5.9 66 153-218 31-96 (133)
25 2vyi_A SGTA protein; chaperone 91.1 0.36 1.2E-05 41.8 6.3 80 129-218 13-92 (131)
26 1hxi_A PEX5, peroxisome target 90.8 0.34 1.1E-05 44.1 5.9 68 153-220 32-99 (121)
27 4ga2_A E3 SUMO-protein ligase 90.7 0.31 1.1E-05 45.9 5.8 63 153-216 80-144 (150)
28 3rkv_A Putative peptidylprolyl 90.6 0.4 1.4E-05 45.0 6.5 66 153-218 78-144 (162)
29 3u4t_A TPR repeat-containing p 90.6 0.52 1.8E-05 47.1 7.6 79 129-217 75-154 (272)
30 3q49_B STIP1 homology and U bo 90.5 0.31 1.1E-05 43.6 5.4 49 153-201 58-106 (137)
31 1a17_A Serine/threonine protei 90.5 0.46 1.6E-05 43.5 6.6 67 152-218 27-93 (166)
32 1elr_A TPR2A-domain of HOP; HO 90.5 0.28 9.5E-06 42.7 4.9 66 153-219 53-125 (131)
33 3gyz_A Chaperone protein IPGC; 90.3 0.27 9.4E-06 47.3 5.1 67 153-219 51-117 (151)
34 1na0_A Designed protein CTPR3; 90.3 0.58 2E-05 40.1 6.8 65 153-217 58-122 (125)
35 2kc7_A BFR218_protein; tetratr 90.3 0.35 1.2E-05 41.2 5.3 71 152-224 14-85 (99)
36 3gyz_A Chaperone protein IPGC; 90.1 0.57 2E-05 45.0 7.2 50 153-202 85-134 (151)
37 2if4_A ATFKBP42; FKBP-like, al 90.0 0.23 7.7E-06 53.8 4.7 81 128-218 230-310 (338)
38 1ihg_A Cyclophilin 40; ppiase 89.8 0.49 1.7E-05 52.1 7.3 83 129-221 274-356 (370)
39 2fbn_A 70 kDa peptidylprolyl i 89.4 0.69 2.4E-05 44.9 7.3 80 129-218 39-134 (198)
40 1kt0_A FKBP51, 51 kDa FK506-bi 89.3 0.53 1.8E-05 53.1 7.3 69 153-221 332-400 (457)
41 4gyw_A UDP-N-acetylglucosamine 89.3 0.37 1.3E-05 58.3 6.3 80 131-220 12-91 (723)
42 1a17_A Serine/threonine protei 89.3 0.77 2.6E-05 42.0 7.1 62 153-214 62-123 (166)
43 1elr_A TPR2A-domain of HOP; HO 89.2 0.32 1.1E-05 42.3 4.2 62 130-201 6-67 (131)
44 1na0_A Designed protein CTPR3; 89.0 0.8 2.7E-05 39.2 6.7 66 152-217 23-88 (125)
45 1xnf_A Lipoprotein NLPI; TPR, 88.3 0.66 2.2E-05 46.2 6.4 67 153-219 58-124 (275)
46 3k9i_A BH0479 protein; putativ 88.3 0.41 1.4E-05 42.6 4.4 63 129-201 28-90 (117)
47 4gyw_A UDP-N-acetylglucosamine 88.1 0.56 1.9E-05 56.8 6.7 68 153-220 92-159 (723)
48 3rjv_A Putative SEL1 repeat pr 88.0 0.57 1.9E-05 46.7 5.6 82 130-218 87-174 (212)
49 2kck_A TPR repeat; tetratricop 88.0 0.82 2.8E-05 38.5 5.9 50 153-202 55-107 (112)
50 3hym_B Cell division cycle pro 87.9 0.93 3.2E-05 46.2 7.4 67 152-218 250-316 (330)
51 1hh8_A P67PHOX, NCF-2, neutrop 87.9 0.94 3.2E-05 43.7 7.1 50 153-202 52-101 (213)
52 1elw_A TPR1-domain of HOP; HOP 87.5 0.6 2.1E-05 39.7 4.8 67 152-218 18-84 (118)
53 2dba_A Smooth muscle cell asso 87.3 0.9 3.1E-05 40.6 6.1 67 152-218 42-111 (148)
54 2xcb_A PCRH, regulatory protei 87.3 0.64 2.2E-05 42.8 5.2 68 152-219 32-99 (142)
55 2e2e_A Formate-dependent nitri 87.1 0.89 3E-05 42.9 6.2 80 129-218 45-127 (177)
56 3urz_A Uncharacterized protein 86.9 0.8 2.7E-05 45.2 6.0 65 152-216 68-132 (208)
57 2vgx_A Chaperone SYCD; alterna 86.8 1.4 4.7E-05 41.4 7.3 49 153-201 70-118 (148)
58 2pl2_A Hypothetical conserved 86.5 0.99 3.4E-05 44.9 6.4 67 152-219 98-164 (217)
59 4i17_A Hypothetical protein; T 86.3 1.1 3.6E-05 44.1 6.5 68 153-220 91-167 (228)
60 4eqf_A PEX5-related protein; a 86.1 1 3.5E-05 47.4 6.6 68 152-219 227-294 (365)
61 2vgx_A Chaperone SYCD; alterna 85.8 0.84 2.9E-05 43.0 5.2 67 153-219 36-102 (148)
62 1p5q_A FKBP52, FK506-binding p 85.5 1.2 4.1E-05 47.9 6.9 81 129-219 148-243 (336)
63 3uq3_A Heat shock protein STI1 85.2 1.2 4.2E-05 43.5 6.3 68 152-219 153-220 (258)
64 3ieg_A DNAJ homolog subfamily 85.0 1.9 6.4E-05 44.3 7.8 70 152-221 286-355 (359)
65 4abn_A Tetratricopeptide repea 85.0 1.1 3.6E-05 50.7 6.5 70 152-221 235-307 (474)
66 2xcb_A PCRH, regulatory protei 84.8 1.1 3.7E-05 41.3 5.4 49 153-201 67-115 (142)
67 2fo7_A Synthetic consensus TPR 84.6 1.6 5.3E-05 37.6 6.0 61 153-213 16-76 (136)
68 3as5_A MAMA; tetratricopeptide 84.6 1.6 5.3E-05 40.1 6.4 66 153-218 91-156 (186)
69 3rjv_A Putative SEL1 repeat pr 84.4 1.4 4.8E-05 43.8 6.4 78 129-215 126-209 (212)
70 1klx_A Cysteine rich protein B 84.2 0.96 3.3E-05 42.3 4.8 59 151-213 74-136 (138)
71 1zu2_A Mitochondrial import re 84.0 0.59 2E-05 46.4 3.3 69 153-222 61-140 (158)
72 2xev_A YBGF; tetratricopeptide 83.9 1.8 6.1E-05 38.1 6.2 49 153-201 54-105 (129)
73 2fo7_A Synthetic consensus TPR 83.9 2.1 7.1E-05 36.7 6.5 60 153-212 50-109 (136)
74 2h6f_A Protein farnesyltransfe 83.8 1.4 4.8E-05 48.9 6.6 67 153-219 147-213 (382)
75 2h6f_A Protein farnesyltransfe 83.7 1.3 4.5E-05 49.1 6.4 66 153-218 181-246 (382)
76 1fch_A Peroxisomal targeting s 83.1 1.7 5.6E-05 45.4 6.5 68 152-219 231-298 (368)
77 1qqe_A Vesicular transport pro 82.8 1.8 6.2E-05 45.0 6.7 74 128-211 158-238 (292)
78 3rkv_A Putative peptidylprolyl 82.7 0.9 3.1E-05 42.5 3.9 67 152-218 25-109 (162)
79 2kat_A Uncharacterized protein 82.7 1.4 4.9E-05 38.5 5.1 64 156-219 3-66 (115)
80 3vtx_A MAMA; tetratricopeptide 82.5 1.3 4.4E-05 41.8 5.0 67 153-219 88-154 (184)
81 2vsy_A XCC0866; transferase, g 82.2 1.7 5.7E-05 49.7 6.7 67 153-219 72-138 (568)
82 2pl2_A Hypothetical conserved 82.2 1.7 5.9E-05 43.1 6.0 67 153-219 20-86 (217)
83 2vq2_A PILW, putative fimbrial 82.2 2 7E-05 40.9 6.3 65 153-217 23-87 (225)
84 3ro3_A PINS homolog, G-protein 82.0 0.79 2.7E-05 40.9 3.1 61 129-199 10-76 (164)
85 2c2l_A CHIP, carboxy terminus 81.7 2.4 8.1E-05 44.2 7.1 68 152-219 18-85 (281)
86 2vsy_A XCC0866; transferase, g 81.6 1.7 5.9E-05 49.6 6.5 80 130-219 25-104 (568)
87 3ulq_A Response regulator aspa 81.5 0.98 3.3E-05 48.4 4.1 80 129-218 185-276 (383)
88 3k9i_A BH0479 protein; putativ 81.4 0.35 1.2E-05 43.0 0.5 67 153-219 5-74 (117)
89 3hym_B Cell division cycle pro 81.2 3.1 0.00011 42.2 7.6 67 153-219 140-206 (330)
90 1wao_1 Serine/threonine protei 81.2 2.1 7E-05 48.7 6.9 63 153-215 55-117 (477)
91 3as5_A MAMA; tetratricopeptide 81.1 2.2 7.6E-05 39.0 5.9 65 153-217 57-121 (186)
92 4i17_A Hypothetical protein; T 81.1 2.1 7.3E-05 41.9 6.1 68 152-219 21-89 (228)
93 1wao_1 Serine/threonine protei 81.0 1.7 5.7E-05 49.5 6.0 69 151-219 19-87 (477)
94 4gcn_A Protein STI-1; structur 80.8 1.7 5.9E-05 39.6 5.0 48 153-200 57-111 (127)
95 1w3b_A UDP-N-acetylglucosamine 80.6 3.1 0.0001 44.2 7.6 64 154-217 287-350 (388)
96 1hxi_A PEX5, peroxisome target 80.2 0.63 2.2E-05 42.3 1.8 48 153-200 66-113 (121)
97 1fch_A Peroxisomal targeting s 80.2 1.6 5.4E-05 45.6 5.1 68 152-219 265-343 (368)
98 2xev_A YBGF; tetratricopeptide 80.0 2.9 0.0001 36.6 6.1 66 152-217 16-87 (129)
99 2q7f_A YRRB protein; TPR, prot 79.4 3 0.0001 40.4 6.6 66 153-218 106-171 (243)
100 1ouv_A Conserved hypothetical 78.8 3.3 0.00011 41.8 6.8 62 153-218 21-86 (273)
101 2ho1_A Type 4 fimbrial biogene 78.6 3.5 0.00012 40.5 6.8 48 153-200 86-133 (252)
102 4abn_A Tetratricopeptide repea 78.5 2 6.9E-05 48.5 5.6 66 152-218 116-182 (474)
103 2y4t_A DNAJ homolog subfamily 77.9 4.2 0.00014 43.7 7.7 69 152-220 309-377 (450)
104 1xnf_A Lipoprotein NLPI; TPR, 77.9 4.3 0.00015 40.1 7.3 54 153-206 92-145 (275)
105 2q7f_A YRRB protein; TPR, prot 77.5 3.9 0.00013 39.6 6.7 65 153-217 72-136 (243)
106 4g1t_A Interferon-induced prot 77.1 1.3 4.4E-05 48.4 3.3 49 153-201 387-459 (472)
107 2vq2_A PILW, putative fimbrial 76.9 4.7 0.00016 38.3 7.0 48 153-200 57-105 (225)
108 1kt0_A FKBP51, 51 kDa FK506-bi 76.1 2.6 8.8E-05 47.5 5.6 67 152-218 282-363 (457)
109 3edt_B KLC 2, kinesin light ch 76.0 1.3 4.3E-05 43.8 2.7 62 130-201 87-156 (283)
110 2ho1_A Type 4 fimbrial biogene 75.8 5.6 0.00019 39.0 7.4 65 153-217 156-220 (252)
111 3cv0_A Peroxisome targeting si 75.7 3.8 0.00013 41.5 6.3 67 152-218 186-252 (327)
112 3q15_A PSP28, response regulat 75.0 2.2 7.5E-05 45.7 4.5 81 128-218 182-273 (378)
113 3qww_A SET and MYND domain-con 75.0 1.3 4.4E-05 50.3 2.8 49 152-200 354-410 (433)
114 2c2l_A CHIP, carboxy terminus 74.5 2.6 8.8E-05 43.9 4.7 48 153-200 53-100 (281)
115 1klx_A Cysteine rich protein B 74.3 4.1 0.00014 37.9 5.6 61 154-218 41-105 (138)
116 4eqf_A PEX5-related protein; a 73.8 3.1 0.00011 43.7 5.2 67 153-219 80-146 (365)
117 3uq3_A Heat shock protein STI1 73.8 2.6 8.7E-05 41.1 4.2 50 152-201 187-236 (258)
118 2e2e_A Formate-dependent nitri 73.7 5 0.00017 37.6 6.1 66 155-221 98-163 (177)
119 3u4t_A TPR repeat-containing p 73.7 6.7 0.00023 38.9 7.4 49 152-200 17-65 (272)
120 2r5s_A Uncharacterized protein 73.3 4.5 0.00015 38.4 5.7 63 157-219 93-157 (176)
121 3ieg_A DNAJ homolog subfamily 73.1 4.6 0.00016 41.3 6.2 66 153-218 18-83 (359)
122 3cv0_A Peroxisome targeting si 73.1 4 0.00014 41.3 5.6 51 152-202 220-270 (327)
123 3bee_A Putative YFRE protein; 73.0 5.4 0.00018 35.2 5.8 66 154-220 25-90 (93)
124 1jmt_B Splicing factor U2AF 65 72.9 0.74 2.5E-05 33.0 0.1 12 788-799 11-22 (28)
125 3ro3_A PINS homolog, G-protein 72.7 1.8 6.2E-05 38.5 2.6 61 129-199 50-116 (164)
126 3mkr_A Coatomer subunit epsilo 72.4 7.1 0.00024 40.9 7.6 72 152-223 214-288 (291)
127 2pzi_A Probable serine/threoni 72.4 3.6 0.00012 48.8 5.8 67 152-219 481-547 (681)
128 1qqe_A Vesicular transport pro 72.2 2.3 7.8E-05 44.2 3.7 48 153-200 92-146 (292)
129 1w3b_A UDP-N-acetylglucosamine 71.9 3.8 0.00013 43.5 5.3 67 152-218 149-215 (388)
130 3urz_A Uncharacterized protein 70.5 2.6 8.8E-05 41.5 3.4 68 152-219 18-101 (208)
131 1hh8_A P67PHOX, NCF-2, neutrop 70.4 3.4 0.00012 39.7 4.2 50 153-202 86-151 (213)
132 3edt_B KLC 2, kinesin light ch 70.3 2.2 7.7E-05 42.0 2.9 60 130-199 45-112 (283)
133 2if4_A ATFKBP42; FKBP-like, al 69.7 3.1 0.00011 44.8 4.1 66 152-217 193-275 (338)
134 1ihg_A Cyclophilin 40; ppiase 69.7 3.4 0.00012 45.4 4.5 67 152-218 237-319 (370)
135 2ifu_A Gamma-SNAP; membrane fu 69.5 4.7 0.00016 42.2 5.3 71 129-210 156-232 (307)
136 3gw4_A Uncharacterized protein 69.3 3.3 0.00011 39.1 3.7 61 129-199 108-174 (203)
137 3n71_A Histone lysine methyltr 69.0 1.7 6E-05 50.1 2.0 50 152-201 365-422 (490)
138 2r5s_A Uncharacterized protein 68.7 6.6 0.00023 37.1 5.8 50 151-200 121-172 (176)
139 2xpi_A Anaphase-promoting comp 68.5 3.8 0.00013 46.1 4.6 66 152-217 530-595 (597)
140 2hr2_A Hypothetical protein; a 68.2 2.5 8.4E-05 41.9 2.6 44 156-199 75-129 (159)
141 3gw4_A Uncharacterized protein 67.3 2.3 7.9E-05 40.2 2.2 61 129-199 27-93 (203)
142 1ouv_A Conserved hypothetical 66.9 8.8 0.0003 38.6 6.6 63 152-218 92-158 (273)
143 3ulq_A Response regulator aspa 66.6 4.3 0.00015 43.4 4.4 63 129-201 144-213 (383)
144 3qou_A Protein YBBN; thioredox 66.6 9.4 0.00032 39.6 6.9 65 155-219 202-268 (287)
145 3fp2_A TPR repeat-containing p 66.6 8.5 0.00029 42.3 6.9 64 153-216 325-388 (537)
146 3sf4_A G-protein-signaling mod 65.1 4.1 0.00014 42.7 3.8 61 129-199 188-254 (406)
147 2ifu_A Gamma-SNAP; membrane fu 65.1 3.2 0.00011 43.5 2.9 49 152-200 129-183 (307)
148 2y4t_A DNAJ homolog subfamily 65.0 9.2 0.00032 41.0 6.7 64 154-217 42-105 (450)
149 3qwp_A SET and MYND domain-con 64.0 3.2 0.00011 46.9 2.8 49 152-200 343-399 (429)
150 3u3w_A Transcriptional activat 63.0 6.8 0.00023 40.4 5.0 49 152-200 129-183 (293)
151 2pzi_A Probable serine/threoni 61.9 5.2 0.00018 47.4 4.3 69 152-220 447-515 (681)
152 4a1s_A PINS, partner of inscut 61.3 4.4 0.00015 43.0 3.2 60 130-199 225-290 (411)
153 3e4b_A ALGK; tetratricopeptide 61.3 9.7 0.00033 42.5 6.2 61 152-215 193-257 (452)
154 2qfc_A PLCR protein; TPR, HTH, 61.0 7.3 0.00025 40.2 4.8 62 129-200 156-224 (293)
155 3e4b_A ALGK; tetratricopeptide 60.6 12 0.0004 41.9 6.7 62 152-218 231-295 (452)
156 2qfc_A PLCR protein; TPR, HTH, 60.5 7.5 0.00026 40.1 4.8 47 153-199 130-182 (293)
157 3u3w_A Transcriptional activat 60.4 3.4 0.00012 42.7 2.1 61 130-200 157-224 (293)
158 3mkr_A Coatomer subunit epsilo 59.0 9.9 0.00034 39.8 5.4 68 152-219 180-247 (291)
159 2hr2_A Hypothetical protein; a 58.8 6.8 0.00023 38.7 3.8 67 153-219 26-115 (159)
160 3nf1_A KLC 1, kinesin light ch 58.0 5.2 0.00018 40.1 2.9 61 129-199 70-138 (311)
161 4a1s_A PINS, partner of inscut 57.4 4 0.00014 43.4 2.1 63 129-201 87-155 (411)
162 2gw1_A Mitochondrial precursor 57.1 15 0.00053 39.8 6.7 65 153-217 319-383 (514)
163 3q15_A PSP28, response regulat 56.5 12 0.0004 40.0 5.6 65 127-201 100-170 (378)
164 3sf4_A G-protein-signaling mod 55.9 9.4 0.00032 39.9 4.6 61 131-201 12-76 (406)
165 1zu2_A Mitochondrial import re 55.1 8.4 0.00029 38.0 3.7 67 153-219 17-93 (158)
166 3nf1_A KLC 1, kinesin light ch 54.9 4.7 0.00016 40.5 2.0 49 153-201 126-182 (311)
167 2gw1_A Mitochondrial precursor 54.5 21 0.00073 38.6 7.3 66 152-218 251-316 (514)
168 3ro2_A PINS homolog, G-protein 54.4 10 0.00035 37.9 4.4 49 153-201 20-72 (338)
169 3fp2_A TPR repeat-containing p 53.8 16 0.00055 40.1 6.2 66 152-217 290-355 (537)
170 2xm6_A Protein corresponding t 53.2 7.4 0.00025 43.3 3.5 79 129-218 329-411 (490)
171 3ro2_A PINS homolog, G-protein 52.5 7 0.00024 39.2 2.8 60 130-199 185-250 (338)
172 2xm6_A Protein corresponding t 50.7 20 0.00068 39.8 6.5 82 128-218 291-375 (490)
173 1hz4_A MALT regulatory protein 50.7 9.9 0.00034 40.1 3.7 62 130-201 55-122 (373)
174 2aff_B MKI67 FHA domain intera 50.1 4.3 0.00015 31.8 0.6 15 590-604 27-41 (44)
175 2xpi_A Anaphase-promoting comp 49.0 22 0.00076 39.7 6.5 68 152-219 387-454 (597)
176 2l6j_A TPR repeat-containing p 48.9 8.8 0.0003 32.4 2.5 21 153-173 53-73 (111)
177 1na3_A Designed protein CTPR2; 48.6 7.8 0.00027 31.5 2.0 31 153-183 58-88 (91)
178 4g1t_A Interferon-induced prot 44.0 19 0.00065 39.0 4.8 66 153-218 228-293 (472)
179 2npm_A 14-3-3 domain containin 42.7 53 0.0018 35.0 7.8 56 133-195 151-208 (260)
180 3qky_A Outer membrane assembly 42.0 18 0.00061 36.2 3.9 50 152-201 29-81 (261)
181 2kc7_A BFR218_protein; tetratr 41.7 15 0.00051 30.7 2.8 25 153-177 50-74 (99)
182 2ond_A Cleavage stimulation fa 41.5 38 0.0013 35.0 6.4 65 154-218 80-146 (308)
183 3qou_A Protein YBBN; thioredox 40.7 27 0.00093 36.1 5.2 52 152-204 131-182 (287)
184 3sf4_D Protein inscuteable hom 39.4 9.9 0.00034 30.4 1.1 30 571-600 17-47 (52)
185 3qky_A Outer membrane assembly 39.4 96 0.0033 30.7 8.9 68 151-218 110-197 (261)
186 3ubw_A 14-3-3E, 14-3-3 protein 39.2 1E+02 0.0034 32.9 9.2 35 133-167 151-185 (261)
187 4b4t_Q 26S proteasome regulato 37.7 21 0.00072 38.1 3.9 49 152-200 189-244 (434)
188 1o9d_A 14-3-3-like protein C; 33.8 1.3E+02 0.0046 31.9 9.1 36 133-168 130-165 (260)
189 1hz4_A MALT regulatory protein 32.8 21 0.00071 37.5 2.7 63 129-201 94-164 (373)
190 2ond_A Cleavage stimulation fa 28.3 66 0.0022 33.2 5.6 50 152-201 183-232 (308)
191 3n71_A Histone lysine methyltr 27.2 37 0.0013 39.0 3.7 48 152-199 323-378 (490)
192 3qww_A SET and MYND domain-con 24.9 24 0.00081 39.9 1.6 48 153-200 313-368 (433)
193 3efz_A 14-3-3 protein; 14-3-3, 23.6 1.7E+02 0.0058 31.3 7.7 36 133-168 147-182 (268)
194 3ma5_A Tetratricopeptide repea 22.9 51 0.0017 28.1 3.0 53 168-220 3-55 (100)
195 2yhc_A BAMD, UPF0169 lipoprote 22.5 68 0.0023 31.3 4.2 49 152-200 18-69 (225)
196 3uzd_A 14-3-3 protein gamma; s 21.6 1.4E+02 0.0047 31.6 6.4 35 133-167 126-160 (248)
No 1
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=2.1e-75 Score=675.43 Aligned_cols=440 Identities=29% Similarity=0.486 Sum_probs=340.8
Q ss_pred CHHHHHHHHhcChhhhhhchHHHHHHH-HHHHHHHHHHHHHHHhhhccCCCCcccccCCCchhhHHHHHHHHHHHHHHHH
Q 002374 1 MRENYEAIILEDHAFSEQHNVEYALWQ-LHYRRIEELRAHYSAAVSSAGSNTSQATKVPLRSDRVTKIRQQFKTFLSEAT 79 (929)
Q Consensus 1 lRe~ye~iIl~D~~fa~~~~VE~~LWk-~hYk~Ie~fRk~ik~~~~~~~s~~~Q~~k~~~~~~~~rkl~~~f~~fLk~a~ 79 (929)
||++|+++||.|++|+.+++||+.||| +||++|+.+|+..+. +.+ + ..++++..|..||++|+
T Consensus 36 L~~~~~~lil~d~~~a~~~~ve~~LWk~~fy~~I~~~r~~~~~------------~~~---~-~~~~~~~~~~~fL~~a~ 99 (497)
T 1ya0_A 36 LQDLYQKMLVTDLEYALDKKVEQDLWNHAFKNQITTLQGQAKN------------RAN---P-NRSEVQANLSLFLEAAS 99 (497)
T ss_dssp HHHHHHHHHHHCHHHHHHHTHHHHHHHHHTHHHHHHHHHHHSC------------SSC---T-TTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHhHhHhhHHHHHHHHHHHHHHHHHHHHhhh------------cCC---c-cHHHHHHHHHHHHHHHH
Confidence 589999999999999999999999999 677899999987642 111 1 12467889999999999
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCccccccccccCCCCc----hhhhhhHHHHHHHHHHhcchhhhhhhhcCCCCccccHH
Q 002374 80 GFYHELILKIRAKYGLPLGNFSEDSENRIIMDKDGKKS----SEVKKGLVSCHRCLIYLGDLARYKGLYGEGDSKSREYA 155 (929)
Q Consensus 80 ~FY~~LI~~L~~~y~l~l~~~~~~~~~~~v~~kd~~~s----~~~k~al~schrCLi~LGDLaRYr~~~~~~~~~~~~~~ 155 (929)
+||++||++|+.+|+++++.+.+......+.++....+ +....++++|||||||||||+|||++ |+
T Consensus 100 ~FY~~li~~l~~~y~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~hr~l~~LGDL~RY~~~----------~~ 169 (497)
T 1ya0_A 100 GFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLVHLGDIARYRNQ----------TS 169 (497)
T ss_dssp HHHHHHHHHHTC-------------------------------CCHHHHHHHHHHHHHHHHHHHHTTC----------HH
T ss_pred HHHHHHHHHHHHHhCCChHhhhhhhhhccccccccccccccccchhHHHHHHHHHHHHcccHHHHHHH----------HH
Confidence 99999999999999998765543322222222211111 12235678999999999999999975 46
Q ss_pred HHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhcCCCCChhHHHHHHHHHHHHHhhhhhcccccccccc
Q 002374 156 AASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAVDSPFSTARDNLIVAFEKNRQSYSQMSGDVKSSTA 235 (929)
Q Consensus 156 ~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~~Pf~~A~~NL~~lf~k~r~~~~ql~~~~k~~~~ 235 (929)
.|++||.+|+.+.|++|+||||||+|++++++.++|+|||+|||++++||++|++||..+|+++.+.....
T Consensus 170 ~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~~~~~~~~~--------- 240 (497)
T 1ya0_A 170 QAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRDEV--------- 240 (497)
T ss_dssp HHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHHTTSCCCC---------
T ss_pred HHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhhhhc---------
Confidence 89999999999999999999999999999999999999999999999999999999999999986532100
Q ss_pred cccccccCCCCCcccccccccccccchhhhhhcccchHHHHHHHHHHHHHHhccccccCChhHHHHHHHHHHHHHHHHhc
Q 002374 236 KEAGRLTGKGRGKVEVKLASKDADMETSAVKESVSGVQEKLKAFCTRFVRLNGILFTRTSLETFAEVLALVSSGLCELLS 315 (929)
Q Consensus 236 ~~p~r~~~~~~g~~e~rl~~~d~~~e~~~~k~~~~s~~E~~k~f~~~FV~lhGiLFtk~~lEtF~~~l~~~l~~L~~lL~ 315 (929)
+ ...+ .++|+..||++||+||+++++++|..+...++.+|..++.
T Consensus 241 ------------~-------------------~~~~----~~~~~~~Fv~lh~~lf~~~~~~~f~~l~~~~~~~l~~~l~ 285 (497)
T 1ya0_A 241 ------------K-------------------TKWG----VSDFIKAFIKFHGHVYLSKSLEKLSPLREKLEEQFKELLF 285 (497)
T ss_dssp ------------C-------------------SSCC----HHHHHHHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHHHHH
T ss_pred ------------c-------------------ccCC----hHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHh
Confidence 0 0001 2468889999999999999999999999999999999886
Q ss_pred CCCccccccCCCcccchHHHHHHHHHHHHhhccCCcc---ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc---
Q 002374 316 SGPEEELNFGSDANENALFIVRLVSILIFTVHNLKKE---NENQTYAEIVQRAVLLQNAFTAVFELMGHIIERCMQL--- 389 (929)
Q Consensus 316 ~~~~~el~~g~~~~~~a~~llqlvaI~Ifavhnl~k~---s~~qs~aei~qrs~ll~~Al~~Af~~~s~ll~r~~ql--- 389 (929)
.+. .+...+++|++||||++|+...+ ...+++++..+.+ ...++.++|+++++++++|.+.
T Consensus 286 ~~~-----------~~~~~lv~i~~ini~~~~~~~~~~~e~~~~s~~~~~~~s--~~~~l~l~~~~l~~~l~~~~~~~~~ 352 (497)
T 1ya0_A 286 QKA-----------FNSQQLVHVTVINLFQLHHLRDFSNETEQHTYSQDEQLC--WTQLLALFMSFLGILCKCPLQNESQ 352 (497)
T ss_dssp TTC-----------SCHHHHHHHHHHHHHHHHHHSCGGGGTSCCCCCHHHHHH--HHHHHHHHHHHHHHHHHHHHCC-CC
T ss_pred hcc-----------ccHHHHHHHHHHHHHHHHhcccCchhhcccccchhhhhh--HHHHHHHHHHHHHHHHHHHHhhccc
Confidence 432 23357999999999999987542 2234444433322 2346788899999999998653
Q ss_pred CCCCCCCCcchhHHHHHHhhcCccccCCCChhhhhhhhccccHHHHHHHHHHhhhcCCCCCCCcccchhhcccCCccccc
Q 002374 390 SDPSSSYLLPGVLVFVEWLACYPDIASGSDADERQATVRSNFWNQCISFLNKILSLGPMSVADDEDLTCFFNMSRYDEAE 469 (929)
Q Consensus 390 ~Dpn~~~lLPAVlVfLdWL~~~Pd~~~~~e~de~q~~~~~~pW~~La~lLNtLl~~~~~~id~~~de~~f~~mp~~~e~e 469 (929)
.++...++||+||||++||+|+|+++.+..+++ +.+||+.|+.|||+|.+.. +| + +
T Consensus 353 e~~~~~~~LP~V~v~l~wL~~~~~~~~~~~~~e-----~~~~W~~la~fLN~L~~~~-------~d------~---~--- 408 (497)
T 1ya0_A 353 EESYNAYPLPAVKVSMDWLRLRPRVFQEAVVDE-----RQYIWPWLISLLNSFHPHE-------ED------L---S--- 408 (497)
T ss_dssp SSCSSSSSHHHHHHHHHHHTTCGGGGGCHHHHT-----TTTSHHHHHHHHGGGCCBS-------CC------C---C---
T ss_pred cCCCCccccccHHHHHHHHHhChhhhchhhhhh-----hhhHHHHHHHHHHhCCCcc-------cc------C---C---
Confidence 256678899999999999999999998865553 5689999999999997542 11 1 1
Q ss_pred cccccCCchhhhhccCcCCCCCCCCCCCCCCCC-C-CCCchhhhhhHHHHHHHHHHHHhccccCCCccEEEcCCCcEEEc
Q 002374 470 TENRLALWEDIELRGFLPLLPAQTILDFSRKIS-F-GGDGNKERKDRVKRIFAAGKALANVIMVDQKPVCFDSKVKKFVI 547 (929)
Q Consensus 470 ~~~~~pLPEDf~LRGFlPL~~a~~~l~F~~~~~-~-~~De~s~~~~R~~RIL~lG~~LA~~~~~~~~wI~fD~~~rkF~v 547 (929)
.+..+||||||+||||+|+++++++++|.+++. + ++++.++...|++||||+|++||++ .++||+||++.++|..
T Consensus 409 ~~~~~~LpED~~LRGf~pl~~~~p~~~F~~~~~~~~~~~~~~~~~~R~~RiL~lG~~LA~~---~~r~i~~d~~~~~~~~ 485 (497)
T 1ya0_A 409 SISATPLPEEFELQGFLALRPSFRNLDFSKGHQGITGDKEGQQRRIRQQRLISIGKWIADN---QPRLIQCENEVGKLLF 485 (497)
T ss_dssp -CCCSCCHHHHHTTTCGGGHHHHTTCCCSSCC------CCHHHHHHHHHHHHHHHHHHHHH---CTTTCEEEEETTEEEE
T ss_pred CCCCccChhHHHhcCccchhhhcCccccccCCccccccchhHHHHHHHHHHHHHHHHHHcC---CCCeEEEecCCCeEEe
Confidence 246799999999999999999999999998664 3 3446899999999999999999996 6899999999999998
Q ss_pred cCC
Q 002374 548 GTE 550 (929)
Q Consensus 548 ~~e 550 (929)
-++
T Consensus 486 ~~~ 488 (497)
T 1ya0_A 486 ITE 488 (497)
T ss_dssp ECS
T ss_pred eec
Confidence 665
No 2
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=95.15 E-value=0.043 Score=45.67 Aligned_cols=67 Identities=27% Similarity=0.273 Sum_probs=57.1
Q ss_pred ccHHHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhcCCCCChhHHHHHHHHHHH
Q 002374 152 REYAAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAVDSPFSTARDNLIVAFEK 218 (929)
Q Consensus 152 ~~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~~Pf~~A~~NL~~lf~k 218 (929)
.+|..|..+|.+|+.+.|.....+..+|.+....++.=.|+.+|-+++....-...+..||-.++..
T Consensus 23 ~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 89 (91)
T 1na3_A 23 GDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK 89 (91)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Confidence 3578899999999999999999999999999999999999999999987655567777777665543
No 3
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=93.83 E-value=0.15 Score=43.81 Aligned_cols=54 Identities=17% Similarity=0.021 Sum_probs=48.5
Q ss_pred ccHHHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhcCCCCC
Q 002374 152 REYAAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAVDSPF 205 (929)
Q Consensus 152 ~~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~~Pf 205 (929)
.+|..|..+|.+|+.+.|.....++.+|.+....++.=.|+-+|-+++......
T Consensus 18 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 71 (111)
T 2l6j_A 18 GLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTA 71 (111)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSST
T ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence 467899999999999999999999999999999999999999999998664434
No 4
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=93.67 E-value=0.077 Score=48.90 Aligned_cols=63 Identities=17% Similarity=-0.015 Sum_probs=55.4
Q ss_pred cHHHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhcCCCCChhHHHHHHHH
Q 002374 153 EYAAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAVDSPFSTARDNLIVA 215 (929)
Q Consensus 153 ~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~~Pf~~A~~NL~~l 215 (929)
+|..|..+|.+|+.+.|.+..+|..+|.+....++.=+|+-+|-+++-..--...|+.+|..+
T Consensus 62 ~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 62 EFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 356899999999999999999999999999999999999999999987765578888887654
No 5
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=93.63 E-value=0.049 Score=50.14 Aligned_cols=51 Identities=18% Similarity=0.059 Sum_probs=47.4
Q ss_pred ccHHHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhcCC
Q 002374 152 REYAAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAVD 202 (929)
Q Consensus 152 ~~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~ 202 (929)
.+|..|..+|.+|+.+.|.....|+.+|.+....++.-.|+-+|-+++-..
T Consensus 22 ~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~ 72 (127)
T 4gcn_A 22 KDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVG 72 (127)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 468899999999999999999999999999999999999999999998643
No 6
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=93.40 E-value=0.11 Score=49.01 Aligned_cols=66 Identities=27% Similarity=0.134 Sum_probs=43.9
Q ss_pred cHHHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhcCCCCChhHHHHHHHHHHH
Q 002374 153 EYAAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAVDSPFSTARDNLIVAFEK 218 (929)
Q Consensus 153 ~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~~Pf~~A~~NL~~lf~k 218 (929)
+|..|..+|.+|+.+.|.+...|+.+|.++...++.-.|+-+|-+++...--+..+.-++-.++..
T Consensus 26 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 91 (164)
T 3sz7_A 26 EYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFD 91 (164)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 456677777777777777777777777777777777777777777766554455555555554443
No 7
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=93.17 E-value=0.09 Score=49.69 Aligned_cols=68 Identities=21% Similarity=0.207 Sum_probs=60.0
Q ss_pred ccHHHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhcCCCCChhHHHHHHHHHHHH
Q 002374 152 REYAAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAVDSPFSTARDNLIVAFEKN 219 (929)
Q Consensus 152 ~~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~~Pf~~A~~NL~~lf~k~ 219 (929)
.+|+.|..+|.+|+.+.|.+...|+.||.++...++.=.|+-+|-+++-..--++.+.-||-.++.+.
T Consensus 45 ~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 112 (150)
T 4ga2_A 45 KEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKN 112 (150)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 35789999999999999999999999999999999999999999999876555788888888777654
No 8
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=93.15 E-value=0.14 Score=45.77 Aligned_cols=68 Identities=13% Similarity=0.005 Sum_probs=58.6
Q ss_pred ccHHHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhcCCCCChhHHHHHHHHHHHH
Q 002374 152 REYAAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAVDSPFSTARDNLIVAFEKN 219 (929)
Q Consensus 152 ~~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~~Pf~~A~~NL~~lf~k~ 219 (929)
.+|..|..+|.+|+.+.|.+...|+.+|.+....++.-.|+-+|-+++...--+..+.-++-.++...
T Consensus 18 ~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 85 (126)
T 3upv_A 18 SDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAV 85 (126)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999987655777777776666553
No 9
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=93.13 E-value=0.1 Score=46.67 Aligned_cols=50 Identities=12% Similarity=-0.084 Sum_probs=46.2
Q ss_pred cHHHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhcCC
Q 002374 153 EYAAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAVD 202 (929)
Q Consensus 153 ~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~ 202 (929)
+|..|..+|.+|+.+.|.....|..+|.+....++.-.|+-+|-+++...
T Consensus 53 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 53 SFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhC
Confidence 46789999999999999999999999999999999999999999988654
No 10
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=93.12 E-value=0.13 Score=48.99 Aligned_cols=78 Identities=17% Similarity=0.023 Sum_probs=64.2
Q ss_pred HHHhcchhhhhhhhcCCCCccccHHHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhcCCCCChhHHH
Q 002374 131 LIYLGDLARYKGLYGEGDSKSREYAAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAVDSPFSTARD 210 (929)
Q Consensus 131 Li~LGDLaRYr~~~~~~~~~~~~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~~Pf~~A~~ 210 (929)
+..||++.+-+ .+|+.|..+|.+|+.+.|.+..++..||.+....++.=.|+-++.+++....-...+..
T Consensus 8 y~~lG~~~~~~----------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 77 (184)
T 3vtx_A 8 YMDIGDKKRTK----------GDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYY 77 (184)
T ss_dssp HHHHHHHHHHH----------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHH
T ss_pred HHHHHHHHHHc----------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHH
Confidence 45688886554 35789999999999999999999999999999999999999999988877666777776
Q ss_pred HHHHHHHH
Q 002374 211 NLIVAFEK 218 (929)
Q Consensus 211 NL~~lf~k 218 (929)
++-..+..
T Consensus 78 ~~~~~~~~ 85 (184)
T 3vtx_A 78 ILGSANFM 85 (184)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66555544
No 11
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=93.06 E-value=0.091 Score=48.42 Aligned_cols=68 Identities=15% Similarity=0.017 Sum_probs=61.8
Q ss_pred ccHHHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhcCCCCChhHHHHHHHHHHHH
Q 002374 152 REYAAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAVDSPFSTARDNLIVAFEKN 219 (929)
Q Consensus 152 ~~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~~Pf~~A~~NL~~lf~k~ 219 (929)
.+|..|..+|.+|+.+.|.+...|+.+|.+....++.-.|+-+|-+++-....+..+.-|+-.++...
T Consensus 27 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 94 (126)
T 4gco_A 27 GDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAM 94 (126)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC
Confidence 46889999999999999999999999999999999999999999999988777888888887777664
No 12
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=92.98 E-value=0.18 Score=45.26 Aligned_cols=68 Identities=19% Similarity=0.034 Sum_probs=57.0
Q ss_pred ccHHHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhcCCCCChhHHHHHHHHHHHH
Q 002374 152 REYAAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAVDSPFSTARDNLIVAFEKN 219 (929)
Q Consensus 152 ~~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~~Pf~~A~~NL~~lf~k~ 219 (929)
.+|..|..+|.+|+.+.|.+...|+.+|.++...++.-.|+-+|-+++....-...+.-++-.++...
T Consensus 23 ~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 90 (137)
T 3q49_B 23 RKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEM 90 (137)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 35778999999999999999999999999999999999999999999876555666777776665543
No 13
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=92.73 E-value=0.22 Score=42.51 Aligned_cols=63 Identities=16% Similarity=0.090 Sum_probs=52.7
Q ss_pred cHHHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhcCCCCChhHHHHHHHH
Q 002374 153 EYAAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAVDSPFSTARDNLIVA 215 (929)
Q Consensus 153 ~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~~Pf~~A~~NL~~l 215 (929)
+|..|..+|.+|+.+.|.....+..+|.+....++.-.|+-+|-+++......+.+..++..+
T Consensus 53 ~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 53 DYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 467899999999999999999999999999999999999999988886654456666655544
No 14
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=92.60 E-value=0.15 Score=44.81 Aligned_cols=65 Identities=20% Similarity=0.100 Sum_probs=51.9
Q ss_pred cHHHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhcCCCCChhHHHHHHHHHH
Q 002374 153 EYAAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAVDSPFSTARDNLIVAFE 217 (929)
Q Consensus 153 ~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~~Pf~~A~~NL~~lf~ 217 (929)
+|+.|..+|.+|+.+.|.....++.+|.++...++.-.|+.+|-+++....-...+..++..++.
T Consensus 65 ~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 129 (133)
T 2lni_A 65 EFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMM 129 (133)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 56789999999999999999999999999999899889999998887654334555555555443
No 15
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=92.40 E-value=0.2 Score=43.80 Aligned_cols=66 Identities=15% Similarity=0.024 Sum_probs=53.8
Q ss_pred cHHHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhcC--CCCChhHHHHHHHHHHH
Q 002374 153 EYAAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAV--DSPFSTARDNLIVAFEK 218 (929)
Q Consensus 153 ~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~--~~Pf~~A~~NL~~lf~k 218 (929)
+|..|..+|.+|+.+.|.....|..||.++...++.=.|+-+|-+++.. ..+-..+...+..++.+
T Consensus 22 ~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~l~~~l~~ 89 (100)
T 3ma5_A 22 NASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSELQDAKLK 89 (100)
T ss_dssp CHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHHHHHHHHH
Confidence 4678999999999999999999999999999999999999999998853 33445555555555544
No 16
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=92.32 E-value=0.18 Score=44.50 Aligned_cols=68 Identities=16% Similarity=0.034 Sum_probs=55.8
Q ss_pred cHHHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhcCC--CCChhHHHHHHHHHHHHH
Q 002374 153 EYAAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAVD--SPFSTARDNLIVAFEKNR 220 (929)
Q Consensus 153 ~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~--~Pf~~A~~NL~~lf~k~r 220 (929)
+|..|..+|.+|+.+.|.....|..||.++...++.-.|+-+|-+++... .+...+..++...+....
T Consensus 34 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~l~~~l~~l~ 103 (115)
T 2kat_A 34 QFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRLA 103 (115)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHhc
Confidence 56789999999999999999999999999999999999999999988542 244555666666665544
No 17
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=92.16 E-value=0.23 Score=48.31 Aligned_cols=84 Identities=11% Similarity=0.102 Sum_probs=67.6
Q ss_pred HHHHHHhcchhhhhhhhcCCCCccccHHHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhcCCCCChh
Q 002374 128 HRCLIYLGDLARYKGLYGEGDSKSREYAAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAVDSPFST 207 (929)
Q Consensus 128 hrCLi~LGDLaRYr~~~~~~~~~~~~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~~Pf~~ 207 (929)
..++..+|.+.+.. .+|..|..+|.+|+.+.|.....+..+|.++...++.=.|+-+|-+++...--...
T Consensus 88 ~~~~~~la~~~~~~----------~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~ 157 (198)
T 2fbn_A 88 ISCNLNLATCYNKN----------KDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLD 157 (198)
T ss_dssp HHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHH
T ss_pred HHHHHHHHHHHHHh----------cCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHH
Confidence 34556666664433 35778999999999999999999999999999999999999999999876545778
Q ss_pred HHHHHHHHHHHHHh
Q 002374 208 ARDNLIVAFEKNRQ 221 (929)
Q Consensus 208 A~~NL~~lf~k~r~ 221 (929)
+..+|..+.....+
T Consensus 158 ~~~~l~~~~~~~~~ 171 (198)
T 2fbn_A 158 IRNSYELCVNKLKE 171 (198)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 88888877776543
No 18
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=92.02 E-value=0.16 Score=43.12 Aligned_cols=65 Identities=14% Similarity=-0.030 Sum_probs=51.8
Q ss_pred ccHHHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhcCCCC--ChhHHHHHHHHH
Q 002374 152 REYAAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAVDSP--FSTARDNLIVAF 216 (929)
Q Consensus 152 ~~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~~P--f~~A~~NL~~lf 216 (929)
.+|..|..+|.+|+.+.|.....+..+|.+....++.=.|+-+|-+++....- ...+..++-.++
T Consensus 20 ~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~ 86 (112)
T 2kck_A 20 GNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADAL 86 (112)
T ss_dssp CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHH
Confidence 35778999999999999999999999999999999988999999988866443 445544444443
No 19
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=92.00 E-value=0.24 Score=46.62 Aligned_cols=67 Identities=13% Similarity=0.023 Sum_probs=53.5
Q ss_pred cHHHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhcCCCCChhH--HHHHHHHHHHH
Q 002374 153 EYAAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAVDSPFSTA--RDNLIVAFEKN 219 (929)
Q Consensus 153 ~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~~Pf~~A--~~NL~~lf~k~ 219 (929)
+|..|..+|.+|+.+.|.+...|+.||.++...++.-.|+-+|-+++...--+..+ ...|..+..+.
T Consensus 60 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~ 128 (164)
T 3sz7_A 60 QHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTKRKI 128 (164)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999998765444443 33334433333
No 20
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=91.74 E-value=0.21 Score=43.31 Aligned_cols=67 Identities=24% Similarity=0.217 Sum_probs=55.1
Q ss_pred cHHHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhcCCCCChhHHHHHHHHHHHH
Q 002374 153 EYAAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAVDSPFSTARDNLIVAFEKN 219 (929)
Q Consensus 153 ~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~~Pf~~A~~NL~~lf~k~ 219 (929)
+|..|..+|.+|+.+.|.....+..+|.++...++.-.|+-+|-+++........+..++..++...
T Consensus 61 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 127 (131)
T 2vyi_A 61 NYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKL 127 (131)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhcCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence 4678999999999999999999999999999999999999999888876544666666666665543
No 21
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=91.74 E-value=0.14 Score=45.81 Aligned_cols=68 Identities=19% Similarity=0.076 Sum_probs=55.5
Q ss_pred ccHHHHHHHHHHHHhcCC-------CCCCchhhhHHHHhccCCchhhHHHHHhhhcCCCCChhHHHHHHHHHHHHH
Q 002374 152 REYAAASSYYLQAASLWP-------SSGNPHHQLAILASYSSDELVAVYRYFRSLAVDSPFSTARDNLIVAFEKNR 220 (929)
Q Consensus 152 ~~~~~A~~yY~~A~~l~P-------~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~~Pf~~A~~NL~~lf~k~r 220 (929)
.+|..|..||.+|+...+ .....|++||......++.-.|+.+|-+++...--.+.+..|+. .|++..
T Consensus 19 ~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~~-~~~~~~ 93 (104)
T 2v5f_A 19 ADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK-YFEYIM 93 (104)
T ss_dssp TCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH-HHHHHH
T ss_pred cchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhHH-HHHHHH
Confidence 578999999999999863 23456999999999999999999999999876555788888887 676654
No 22
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.53 E-value=0.26 Score=44.29 Aligned_cols=62 Identities=11% Similarity=-0.036 Sum_probs=49.8
Q ss_pred cHHHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhcCCCCChhHHHHHHH
Q 002374 153 EYAAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAVDSPFSTARDNLIV 214 (929)
Q Consensus 153 ~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~~Pf~~A~~NL~~ 214 (929)
+|..|..+|.+|+.+.|.....+..+|.+....++.-.|+-+|-+++....-...+..++..
T Consensus 80 ~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 141 (148)
T 2dba_A 80 DYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRN 141 (148)
T ss_dssp CHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHH
Confidence 56789999999999999999999999999998899889999998888654445555544443
No 23
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=91.31 E-value=0.29 Score=52.75 Aligned_cols=83 Identities=14% Similarity=0.021 Sum_probs=68.8
Q ss_pred HHHHHHhcchhhhhhhhcCCCCccccHHHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhcCCCCChh
Q 002374 128 HRCLIYLGDLARYKGLYGEGDSKSREYAAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAVDSPFST 207 (929)
Q Consensus 128 hrCLi~LGDLaRYr~~~~~~~~~~~~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~~Pf~~ 207 (929)
-.++..||.+.... .+|..|..+|.+|+.+.|.+...|+.+|.++...++.=.|+-+|-+++...--+..
T Consensus 196 ~~~~~nla~~~~~~----------g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~ 265 (336)
T 1p5q_A 196 LASHLNLAMCHLKL----------QAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKA 265 (336)
T ss_dssp HHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHH
T ss_pred HHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH
Confidence 34556666664433 35778999999999999999999999999999999999999999999987666788
Q ss_pred HHHHHHHHHHHHH
Q 002374 208 ARDNLIVAFEKNR 220 (929)
Q Consensus 208 A~~NL~~lf~k~r 220 (929)
+..+|..++.+..
T Consensus 266 a~~~l~~~~~~~~ 278 (336)
T 1p5q_A 266 AKTQLAVCQQRIR 278 (336)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888888777654
No 24
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=91.25 E-value=0.3 Score=42.86 Aligned_cols=66 Identities=15% Similarity=0.121 Sum_probs=56.2
Q ss_pred cHHHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhcCCCCChhHHHHHHHHHHH
Q 002374 153 EYAAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAVDSPFSTARDNLIVAFEK 218 (929)
Q Consensus 153 ~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~~Pf~~A~~NL~~lf~k 218 (929)
+|..|..+|.+|+.+.|.....++.+|.+....++.=+|+-+|-+++........+..++-.++..
T Consensus 31 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~ 96 (133)
T 2lni_A 31 DYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEA 96 (133)
T ss_dssp CSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 567899999999999999999999999999999999999999999987655566677676655544
No 25
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=91.14 E-value=0.36 Score=41.78 Aligned_cols=80 Identities=21% Similarity=0.175 Sum_probs=61.4
Q ss_pred HHHHHhcchhhhhhhhcCCCCccccHHHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhcCCCCChhH
Q 002374 129 RCLIYLGDLARYKGLYGEGDSKSREYAAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAVDSPFSTA 208 (929)
Q Consensus 129 rCLi~LGDLaRYr~~~~~~~~~~~~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~~Pf~~A 208 (929)
.++..+|.+.... .+|..|..+|.+|+.+.|.....+..+|.++...++.-.|+-+|-+++........+
T Consensus 13 ~~~~~~~~~~~~~----------~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 82 (131)
T 2vyi_A 13 ERLKTEGNEQMKV----------ENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKA 82 (131)
T ss_dssp HHHHHHHHHHHHT----------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHc----------cCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHH
Confidence 3455566654433 357789999999999999999999999999999999999999999998764445555
Q ss_pred HHHHHHHHHH
Q 002374 209 RDNLIVAFEK 218 (929)
Q Consensus 209 ~~NL~~lf~k 218 (929)
.-++-.++..
T Consensus 83 ~~~~~~~~~~ 92 (131)
T 2vyi_A 83 YGRMGLALSS 92 (131)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555554443
No 26
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=90.75 E-value=0.34 Score=44.13 Aligned_cols=68 Identities=12% Similarity=0.116 Sum_probs=60.1
Q ss_pred cHHHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhcCCCCChhHHHHHHHHHHHHH
Q 002374 153 EYAAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAVDSPFSTARDNLIVAFEKNR 220 (929)
Q Consensus 153 ~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~~Pf~~A~~NL~~lf~k~r 220 (929)
+|..|..+|.+|+.+.|.+...|..||.+....++.-.|+-+|-|++...--+..+..+|-.++....
T Consensus 32 ~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 32 NLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 99 (121)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 46789999999999999999999999999999999999999999998776668888888877776543
No 27
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=90.67 E-value=0.31 Score=45.90 Aligned_cols=63 Identities=13% Similarity=0.012 Sum_probs=47.3
Q ss_pred cHHHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHH-hhhcCCCC-ChhHHHHHHHHH
Q 002374 153 EYAAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYF-RSLAVDSP-FSTARDNLIVAF 216 (929)
Q Consensus 153 ~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~-RSL~~~~P-f~~A~~NL~~lf 216 (929)
+|..|..+|.+|+.+.|.+..+|+.||.+....++.-+|+-+|+ |++- ..| .+.+......++
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~-l~P~~~~~~~l~~~ll 144 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK-LFPGSPAVYKLKEQLL 144 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH-HSTTCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH-hCcCCHHHHHHHHHHH
Confidence 56789999999999999999999999999988888877775554 5554 345 444444333443
No 28
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=90.62 E-value=0.4 Score=44.96 Aligned_cols=66 Identities=8% Similarity=-0.120 Sum_probs=52.9
Q ss_pred cHHHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhcCCCCCh-hHHHHHHHHHHH
Q 002374 153 EYAAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAVDSPFS-TARDNLIVAFEK 218 (929)
Q Consensus 153 ~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~~Pf~-~A~~NL~~lf~k 218 (929)
+|..|..+|.+|+.+.|.+..+|..+|.+....++.-.|+-+|-+++...--.+ .....|..+-.+
T Consensus 78 ~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~ 144 (162)
T 3rkv_A 78 DLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTER 144 (162)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999999999999999987643344 334444444443
No 29
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=90.58 E-value=0.52 Score=47.10 Aligned_cols=79 Identities=11% Similarity=-0.024 Sum_probs=63.7
Q ss_pred HHHHHhcchhhhhhhhcCCCCccccHHHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhcCCCCChhH
Q 002374 129 RCLIYLGDLARYKGLYGEGDSKSREYAAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAVDSPFSTA 208 (929)
Q Consensus 129 rCLi~LGDLaRYr~~~~~~~~~~~~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~~Pf~~A 208 (929)
.++..+|++.+.. .+|..|..+|.+|+.+.|.....++.||.++...++.-.|+-+|-+++....-...+
T Consensus 75 ~~~~~lg~~~~~~----------~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 144 (272)
T 3u4t_A 75 ADFEYYGKILMKK----------GQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKV 144 (272)
T ss_dssp HHHHHHHHHHHHT----------TCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHH
T ss_pred HHHHHHHHHHHHc----------ccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHH
Confidence 3456677665544 246789999999999999999999999999999999999999999999875446666
Q ss_pred HHHHH-HHHH
Q 002374 209 RDNLI-VAFE 217 (929)
Q Consensus 209 ~~NL~-~lf~ 217 (929)
..++- .++.
T Consensus 145 ~~~l~~~~~~ 154 (272)
T 3u4t_A 145 FYELGQAYYY 154 (272)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 66666 5544
No 30
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=90.53 E-value=0.31 Score=43.57 Aligned_cols=49 Identities=16% Similarity=-0.035 Sum_probs=45.2
Q ss_pred cHHHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhcC
Q 002374 153 EYAAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAV 201 (929)
Q Consensus 153 ~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~ 201 (929)
+|..|..+|.+|+.+.|....+++.||.++...++.-.|+-+|-+++..
T Consensus 58 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 58 QPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 4578999999999999999999999999999999999999999998854
No 31
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=90.49 E-value=0.46 Score=43.52 Aligned_cols=67 Identities=16% Similarity=0.096 Sum_probs=56.0
Q ss_pred ccHHHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhcCCCCChhHHHHHHHHHHH
Q 002374 152 REYAAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAVDSPFSTARDNLIVAFEK 218 (929)
Q Consensus 152 ~~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~~Pf~~A~~NL~~lf~k 218 (929)
.+|..|..+|.+|+.+.|.....++.+|.+....++.=.|+-+|-+++........+.-++-.++..
T Consensus 27 ~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 27 KDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA 93 (166)
T ss_dssp TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 3578899999999999999999999999999999999999999999987655556666666555544
No 32
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=90.48 E-value=0.28 Score=42.69 Aligned_cols=66 Identities=12% Similarity=-0.029 Sum_probs=54.3
Q ss_pred cHHHHHHHHHHHHhcCCCC-------CCchhhhHHHHhccCCchhhHHHHHhhhcCCCCChhHHHHHHHHHHHH
Q 002374 153 EYAAASSYYLQAASLWPSS-------GNPHHQLAILASYSSDELVAVYRYFRSLAVDSPFSTARDNLIVAFEKN 219 (929)
Q Consensus 153 ~~~~A~~yY~~A~~l~P~~-------G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~~Pf~~A~~NL~~lf~k~ 219 (929)
+|..|..+|.+|+.+.|.. ...+..+|.++...++.-.|+-+|-+++-.. |-+....++..+....
T Consensus 53 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~l~~~~~~~ 125 (131)
T 1elr_A 53 DYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEH-RTPDVLKKCQQAEKIL 125 (131)
T ss_dssp CHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHH
Confidence 4678999999999999988 8889999999999999999999999888643 5566666666655554
No 33
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=90.32 E-value=0.27 Score=47.33 Aligned_cols=67 Identities=10% Similarity=-0.138 Sum_probs=59.1
Q ss_pred cHHHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhcCCCCChhHHHHHHHHHHHH
Q 002374 153 EYAAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAVDSPFSTARDNLIVAFEKN 219 (929)
Q Consensus 153 ~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~~Pf~~A~~NL~~lf~k~ 219 (929)
+|..|..+|.+|+.+.|.+...|+.||.+....++.=.|+-+|-|++...--++.+.-|+-..+.+.
T Consensus 51 ~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~l 117 (151)
T 3gyz_A 51 RIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRL 117 (151)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHc
Confidence 4568999999999999999999999999999999999999999999987766888888887777664
No 34
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=90.31 E-value=0.58 Score=40.06 Aligned_cols=65 Identities=26% Similarity=0.270 Sum_probs=53.2
Q ss_pred cHHHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhcCCCCChhHHHHHHHHHH
Q 002374 153 EYAAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAVDSPFSTARDNLIVAFE 217 (929)
Q Consensus 153 ~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~~Pf~~A~~NL~~lf~ 217 (929)
+|+.|..+|.+|+.+.|.....++.+|.+....++.-.|+-+|-+++-...-.+.+..+|-.+..
T Consensus 58 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 122 (125)
T 1na0_A 58 DYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 122 (125)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 46789999999999999999999999999999898889999988887655446666666655543
No 35
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=90.27 E-value=0.35 Score=41.18 Aligned_cols=71 Identities=8% Similarity=-0.027 Sum_probs=56.9
Q ss_pred ccHHHHHHHHHHHHhcCCCCCC-chhhhHHHHhccCCchhhHHHHHhhhcCCCCChhHHHHHHHHHHHHHhhhh
Q 002374 152 REYAAASSYYLQAASLWPSSGN-PHHQLAILASYSSDELVAVYRYFRSLAVDSPFSTARDNLIVAFEKNRQSYS 224 (929)
Q Consensus 152 ~~~~~A~~yY~~A~~l~P~~G~-pynQLAvLa~~~~~~l~AvY~Y~RSL~~~~Pf~~A~~NL~~lf~k~r~~~~ 224 (929)
.+|..|..+|.+|+.+.|.+.. .++.+|.+....++.-.|+-+|-+++...--+..+..+ ..+.+....|.
T Consensus 14 ~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--~~~~~a~~~~~ 85 (99)
T 2kc7_A 14 GDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--KMVMDILNFYN 85 (99)
T ss_dssp TCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--HHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--HHHHHHHHHHH
Confidence 3578899999999999999999 99999999999999999999999998765556666533 34444444443
No 36
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=90.09 E-value=0.57 Score=45.04 Aligned_cols=50 Identities=14% Similarity=0.048 Sum_probs=46.4
Q ss_pred cHHHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhcCC
Q 002374 153 EYAAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAVD 202 (929)
Q Consensus 153 ~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~ 202 (929)
+|+.|..+|.+|+.+.|.+..+|+.||.+....++.=.|+-+|-|++...
T Consensus 85 ~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 85 QFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp CHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 46789999999999999999999999999999999999999999998654
No 37
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=90.00 E-value=0.23 Score=53.76 Aligned_cols=81 Identities=9% Similarity=-0.037 Sum_probs=54.8
Q ss_pred HHHHHHhcchhhhhhhhcCCCCccccHHHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhcCCCCChh
Q 002374 128 HRCLIYLGDLARYKGLYGEGDSKSREYAAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAVDSPFST 207 (929)
Q Consensus 128 hrCLi~LGDLaRYr~~~~~~~~~~~~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~~Pf~~ 207 (929)
..|+..||.+.+.. .+|..|..+|.+|+.+.|.+...|+.+|.++...++.=.|+-+|-|++...--...
T Consensus 230 ~~~~~nla~~~~~~----------g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~ 299 (338)
T 2if4_A 230 NPCHLNIAACLIKL----------KRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKA 299 (338)
T ss_dssp THHHHHHHHHHHTT----------TCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------
T ss_pred HHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHH
Confidence 35777777775443 35778999999999999999999999999999999999999999999876545677
Q ss_pred HHHHHHHHHHH
Q 002374 208 ARDNLIVAFEK 218 (929)
Q Consensus 208 A~~NL~~lf~k 218 (929)
++.+|..+..+
T Consensus 300 a~~~L~~l~~~ 310 (338)
T 2if4_A 300 IRRELRALAEQ 310 (338)
T ss_dssp -----------
T ss_pred HHHHHHHHHHH
Confidence 77777666444
No 38
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=89.84 E-value=0.49 Score=52.10 Aligned_cols=83 Identities=13% Similarity=0.089 Sum_probs=66.6
Q ss_pred HHHHHhcchhhhhhhhcCCCCccccHHHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhcCCCCChhH
Q 002374 129 RCLIYLGDLARYKGLYGEGDSKSREYAAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAVDSPFSTA 208 (929)
Q Consensus 129 rCLi~LGDLaRYr~~~~~~~~~~~~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~~Pf~~A 208 (929)
.++..||.+.+.. .+|..|..+|.+|+.+.|.+...|+.+|.++...++.=+|+-+|-+++...--...+
T Consensus 274 ~~~~nla~~~~~~----------g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~ 343 (370)
T 1ihg_A 274 SCVLNIGACKLKM----------SDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAI 343 (370)
T ss_dssp HHHHHHHHHHHHT----------TCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHhc----------cCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH
Confidence 4555566554332 356789999999999999999999999999999999999999999998765557778
Q ss_pred HHHHHHHHHHHHh
Q 002374 209 RDNLIVAFEKNRQ 221 (929)
Q Consensus 209 ~~NL~~lf~k~r~ 221 (929)
..+|..+..+..+
T Consensus 344 ~~~l~~~~~~~~~ 356 (370)
T 1ihg_A 344 QAELLKVKQKIKA 356 (370)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888777766543
No 39
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=89.40 E-value=0.69 Score=44.86 Aligned_cols=80 Identities=20% Similarity=0.019 Sum_probs=63.6
Q ss_pred HHHHHhcchhhhhhhhcCCCCccccHHHHHHHHHHHHhcCCCCC----------------CchhhhHHHHhccCCchhhH
Q 002374 129 RCLIYLGDLARYKGLYGEGDSKSREYAAASSYYLQAASLWPSSG----------------NPHHQLAILASYSSDELVAV 192 (929)
Q Consensus 129 rCLi~LGDLaRYr~~~~~~~~~~~~~~~A~~yY~~A~~l~P~~G----------------~pynQLAvLa~~~~~~l~Av 192 (929)
..+..+|+...-+ .+|..|..+|.+|+.+.|... ..|+.+|.++...++.-.|+
T Consensus 39 ~~~~~~g~~~~~~----------~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 108 (198)
T 2fbn_A 39 FDIKEEGNEFFKK----------NEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAI 108 (198)
T ss_dssp HHHHHHHHHHHHT----------TCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHc----------CCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 4455666654332 467899999999999999998 89999999999999999999
Q ss_pred HHHHhhhcCCCCChhHHHHHHHHHHH
Q 002374 193 YRYFRSLAVDSPFSTARDNLIVAFEK 218 (929)
Q Consensus 193 Y~Y~RSL~~~~Pf~~A~~NL~~lf~k 218 (929)
-+|-+++........+.-++-.++..
T Consensus 109 ~~~~~al~~~p~~~~~~~~lg~~~~~ 134 (198)
T 2fbn_A 109 DHASKVLKIDKNNVKALYKLGVANMY 134 (198)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 99999998765566666666655544
No 40
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=89.32 E-value=0.53 Score=53.09 Aligned_cols=69 Identities=16% Similarity=0.072 Sum_probs=58.6
Q ss_pred cHHHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhcCCCCChhHHHHHHHHHHHHHh
Q 002374 153 EYAAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAVDSPFSTARDNLIVAFEKNRQ 221 (929)
Q Consensus 153 ~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~~Pf~~A~~NL~~lf~k~r~ 221 (929)
+|..|..+|.+|+.+.|.+..+|+.+|.++...++.=.|+-+|-|++...--+..+..+|..++.+..+
T Consensus 332 ~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~ 400 (457)
T 1kt0_A 332 EYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKE 400 (457)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 567899999999999999999999999999999999999999999998766678888888888776543
No 41
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=89.30 E-value=0.37 Score=58.29 Aligned_cols=80 Identities=19% Similarity=0.283 Sum_probs=66.6
Q ss_pred HHHhcchhhhhhhhcCCCCccccHHHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhcCCCCChhHHH
Q 002374 131 LIYLGDLARYKGLYGEGDSKSREYAAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAVDSPFSTARD 210 (929)
Q Consensus 131 Li~LGDLaRYr~~~~~~~~~~~~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~~Pf~~A~~ 210 (929)
|..||.+.+-+ .+|+.|..+|.+|+.+.|....+|+.||.+....++.=+|+-+|-|++...--+..|..
T Consensus 12 l~nLG~~~~~~----------G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~ 81 (723)
T 4gyw_A 12 LNNLANIKREQ----------GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYS 81 (723)
T ss_dssp HHHHHHHHHHT----------TCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHc----------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 45567664443 24678999999999999999999999999999999999999999999987666889999
Q ss_pred HHHHHHHHHH
Q 002374 211 NLIVAFEKNR 220 (929)
Q Consensus 211 NL~~lf~k~r 220 (929)
||-.++....
T Consensus 82 nLg~~l~~~g 91 (723)
T 4gyw_A 82 NMGNTLKEMQ 91 (723)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHcC
Confidence 9987776643
No 42
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=89.25 E-value=0.77 Score=41.97 Aligned_cols=62 Identities=15% Similarity=-0.108 Sum_probs=51.9
Q ss_pred cHHHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhcCCCCChhHHHHHHH
Q 002374 153 EYAAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAVDSPFSTARDNLIV 214 (929)
Q Consensus 153 ~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~~Pf~~A~~NL~~ 214 (929)
+|..|..+|.+|+.+.|.....++.+|.+....++.-.|+-+|-+++....-...+..++..
T Consensus 62 ~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~ 123 (166)
T 1a17_A 62 CYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQE 123 (166)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999988664445555544433
No 43
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=89.18 E-value=0.32 Score=42.30 Aligned_cols=62 Identities=19% Similarity=0.049 Sum_probs=52.2
Q ss_pred HHHHhcchhhhhhhhcCCCCccccHHHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhcC
Q 002374 130 CLIYLGDLARYKGLYGEGDSKSREYAAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAV 201 (929)
Q Consensus 130 CLi~LGDLaRYr~~~~~~~~~~~~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~ 201 (929)
++..+|.+..-. .+|..|..+|.+|+.+.|.....++.+|.+....++.-.|+-+|-+++..
T Consensus 6 ~~~~l~~~~~~~----------~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 67 (131)
T 1elr_A 6 KEKELGNDAYKK----------KDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEV 67 (131)
T ss_dssp HHHHHHHHHHHT----------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh----------cCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhh
Confidence 455666664332 36789999999999999999999999999999999999999999998864
No 44
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=89.04 E-value=0.8 Score=39.18 Aligned_cols=66 Identities=26% Similarity=0.241 Sum_probs=52.7
Q ss_pred ccHHHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhcCCCCChhHHHHHHHHHH
Q 002374 152 REYAAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAVDSPFSTARDNLIVAFE 217 (929)
Q Consensus 152 ~~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~~Pf~~A~~NL~~lf~ 217 (929)
.+|..|..+|.+|+.+.|.....++.+|.+....++.=.|+-+|-+++........+..++-.++.
T Consensus 23 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 23 GDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 356789999999999999999999999999999999999999998887654334555555544443
No 45
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=88.30 E-value=0.66 Score=46.17 Aligned_cols=67 Identities=19% Similarity=0.123 Sum_probs=57.3
Q ss_pred cHHHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhcCCCCChhHHHHHHHHHHHH
Q 002374 153 EYAAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAVDSPFSTARDNLIVAFEKN 219 (929)
Q Consensus 153 ~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~~Pf~~A~~NL~~lf~k~ 219 (929)
+|..|..+|.+|+.+.|.....++.||.++...++.=.|+-+|-+++........+..++-.++...
T Consensus 58 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~ 124 (275)
T 1xnf_A 58 LRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYG 124 (275)
T ss_dssp CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHh
Confidence 4678999999999999999999999999999999999999999999876555677777777666553
No 46
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=88.27 E-value=0.41 Score=42.58 Aligned_cols=63 Identities=17% Similarity=0.172 Sum_probs=51.5
Q ss_pred HHHHHhcchhhhhhhhcCCCCccccHHHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhcC
Q 002374 129 RCLIYLGDLARYKGLYGEGDSKSREYAAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAV 201 (929)
Q Consensus 129 rCLi~LGDLaRYr~~~~~~~~~~~~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~ 201 (929)
..++.||.+.+-. .+|..|..+|.+|+.+.|.+...++.||.+....++.=.|+-+|-+++..
T Consensus 28 ~~~~~lg~~~~~~----------~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 90 (117)
T 3k9i_A 28 ECYLGLGSTFRTL----------GEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHHHHT----------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc----------CCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4455666654433 34678999999999999999999999999999999999999888888754
No 47
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=88.14 E-value=0.56 Score=56.78 Aligned_cols=68 Identities=22% Similarity=0.246 Sum_probs=61.0
Q ss_pred cHHHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhcCCCCChhHHHHHHHHHHHHH
Q 002374 153 EYAAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAVDSPFSTARDNLIVAFEKNR 220 (929)
Q Consensus 153 ~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~~Pf~~A~~NL~~lf~k~r 220 (929)
+|+.|..+|.+|+.+.|.....|+.||.+....++.=+|+-+|-|++...--+..+..||-.++....
T Consensus 92 ~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g 159 (723)
T 4gyw_A 92 DVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVC 159 (723)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcc
Confidence 46789999999999999999999999999999999999999999999876668999999988776643
No 48
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=87.99 E-value=0.57 Score=46.68 Aligned_cols=82 Identities=17% Similarity=0.082 Sum_probs=62.6
Q ss_pred HHHHhcchhhhhhhhcCCCCccccHHHHHHHHHHHHhcCCC--CCCchhhhHHHHhc----cCCchhhHHHHHhhhcCCC
Q 002374 130 CLIYLGDLARYKGLYGEGDSKSREYAAASSYYLQAASLWPS--SGNPHHQLAILASY----SSDELVAVYRYFRSLAVDS 203 (929)
Q Consensus 130 CLi~LGDLaRYr~~~~~~~~~~~~~~~A~~yY~~A~~l~P~--~G~pynQLAvLa~~----~~~~l~AvY~Y~RSL~~~~ 203 (929)
++..||.+.+.-. ....++.+|..||.+|+...|. ....++.||.++.. ..|.-.|+.||-|++.. .
T Consensus 87 a~~~Lg~~y~~g~------g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~ 159 (212)
T 3rjv_A 87 GEIVLARVLVNRQ------AGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-S 159 (212)
T ss_dssp HHHHHHHHHTCGG------GSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-S
T ss_pred HHHHHHHHHHcCC------CCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-C
Confidence 4556676644322 1235789999999999999884 57899999999987 67888999999999765 3
Q ss_pred CChhHHHHHHHHHHH
Q 002374 204 PFSTARDNLIVAFEK 218 (929)
Q Consensus 204 Pf~~A~~NL~~lf~k 218 (929)
+.+.|.-||-.++..
T Consensus 160 ~~~~a~~~Lg~~y~~ 174 (212)
T 3rjv_A 160 RTGYAEYWAGMMFQQ 174 (212)
T ss_dssp CTTHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHc
Confidence 566788888777765
No 49
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=87.96 E-value=0.82 Score=38.51 Aligned_cols=50 Identities=16% Similarity=0.074 Sum_probs=43.8
Q ss_pred cHHHHHHHHHHHHhcCCC--CCCchhhhHHHHhcc-CCchhhHHHHHhhhcCC
Q 002374 153 EYAAASSYYLQAASLWPS--SGNPHHQLAILASYS-SDELVAVYRYFRSLAVD 202 (929)
Q Consensus 153 ~~~~A~~yY~~A~~l~P~--~G~pynQLAvLa~~~-~~~l~AvY~Y~RSL~~~ 202 (929)
+|+.|..+|.+|+.+.|. ....+..+|.+.... ++.=.|+-++.+.+...
T Consensus 55 ~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 55 RYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp CHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred CHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcc
Confidence 467899999999999999 999999999999999 88888888887776543
No 50
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=87.93 E-value=0.93 Score=46.15 Aligned_cols=67 Identities=21% Similarity=0.177 Sum_probs=58.9
Q ss_pred ccHHHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhcCCCCChhHHHHHHHHHHH
Q 002374 152 REYAAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAVDSPFSTARDNLIVAFEK 218 (929)
Q Consensus 152 ~~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~~Pf~~A~~NL~~lf~k 218 (929)
.+|..|..+|.+|+.+.|.....+..||.++...++.-.|+-+|-+++....-.+.+..+|...++.
T Consensus 250 g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 316 (330)
T 3hym_B 250 KKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEM 316 (330)
T ss_dssp TCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHH
Confidence 4578999999999999999999999999999999999999999999987766678888887776644
No 51
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=87.93 E-value=0.94 Score=43.70 Aligned_cols=50 Identities=10% Similarity=-0.049 Sum_probs=45.9
Q ss_pred cHHHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhcCC
Q 002374 153 EYAAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAVD 202 (929)
Q Consensus 153 ~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~ 202 (929)
+|..|..+|.+|+.+.|.....|+.+|.+....++.=.|+-+|-+++...
T Consensus 52 ~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 101 (213)
T 1hh8_A 52 NMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQL 101 (213)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhC
Confidence 56789999999999999999999999999999999999999999988643
No 52
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=87.51 E-value=0.6 Score=39.67 Aligned_cols=67 Identities=13% Similarity=0.036 Sum_probs=56.5
Q ss_pred ccHHHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhcCCCCChhHHHHHHHHHHH
Q 002374 152 REYAAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAVDSPFSTARDNLIVAFEK 218 (929)
Q Consensus 152 ~~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~~Pf~~A~~NL~~lf~k 218 (929)
.+|..|..+|.+|+.+.|.....+..+|.++...++.-.|+-+|-+++........+..++-.++..
T Consensus 18 ~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~ 84 (118)
T 1elw_A 18 GNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF 84 (118)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 3578999999999999999999999999999999999999999999987654466666666665554
No 53
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=87.28 E-value=0.9 Score=40.61 Aligned_cols=67 Identities=22% Similarity=0.065 Sum_probs=55.9
Q ss_pred ccHHHHHHHHHHHHhcCCCC---CCchhhhHHHHhccCCchhhHHHHHhhhcCCCCChhHHHHHHHHHHH
Q 002374 152 REYAAASSYYLQAASLWPSS---GNPHHQLAILASYSSDELVAVYRYFRSLAVDSPFSTARDNLIVAFEK 218 (929)
Q Consensus 152 ~~~~~A~~yY~~A~~l~P~~---G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~~Pf~~A~~NL~~lf~k 218 (929)
.+|..|..+|.+|+.+.|.. ...+..+|.++...++.-.|+-+|-+++........+.-++-.++..
T Consensus 42 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~ 111 (148)
T 2dba_A 42 GDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEK 111 (148)
T ss_dssp TCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHHH
Confidence 35778999999999999997 89999999999999999999999999887654466666666655554
No 54
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=87.27 E-value=0.64 Score=42.81 Aligned_cols=68 Identities=9% Similarity=-0.124 Sum_probs=57.1
Q ss_pred ccHHHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhcCCCCChhHHHHHHHHHHHH
Q 002374 152 REYAAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAVDSPFSTARDNLIVAFEKN 219 (929)
Q Consensus 152 ~~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~~Pf~~A~~NL~~lf~k~ 219 (929)
.+|..|..+|.+|+.+.|.+...|..||.+....++.=.|+-+|-|++...--.+.+.-++-.++...
T Consensus 32 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 99 (142)
T 2xcb_A 32 GKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQL 99 (142)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHc
Confidence 35678999999999999999999999999999999999999999999877655677777776665543
No 55
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=87.09 E-value=0.89 Score=42.90 Aligned_cols=80 Identities=21% Similarity=0.091 Sum_probs=59.4
Q ss_pred HHHHHhcchhhhhhhhcCCCCccccHHHHHHHHHHHHhcCCCCCCchhhhHHH-HhccCCc--hhhHHHHHhhhcCCCCC
Q 002374 129 RCLIYLGDLARYKGLYGEGDSKSREYAAASSYYLQAASLWPSSGNPHHQLAIL-ASYSSDE--LVAVYRYFRSLAVDSPF 205 (929)
Q Consensus 129 rCLi~LGDLaRYr~~~~~~~~~~~~~~~A~~yY~~A~~l~P~~G~pynQLAvL-a~~~~~~--l~AvY~Y~RSL~~~~Pf 205 (929)
..+..||.+.... .+|..|..+|.+|+.+.|.+...+..+|.+ +...++. =.|+-+|-+++...--.
T Consensus 45 ~~~~~lg~~~~~~----------~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~ 114 (177)
T 2e2e_A 45 EQWALLGEYYLWQ----------NDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNE 114 (177)
T ss_dssp HHHHHHHHHHHHT----------TCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHc----------CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCc
Confidence 3455566664433 357889999999999999999999999999 7667776 77888888887664445
Q ss_pred hhHHHHHHHHHHH
Q 002374 206 STARDNLIVAFEK 218 (929)
Q Consensus 206 ~~A~~NL~~lf~k 218 (929)
..+.-++-.++..
T Consensus 115 ~~~~~~la~~~~~ 127 (177)
T 2e2e_A 115 ITALMLLASDAFM 127 (177)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6666666555544
No 56
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=86.86 E-value=0.8 Score=45.23 Aligned_cols=65 Identities=18% Similarity=0.124 Sum_probs=58.6
Q ss_pred ccHHHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhcCCCCChhHHHHHHHHH
Q 002374 152 REYAAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAVDSPFSTARDNLIVAF 216 (929)
Q Consensus 152 ~~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~~Pf~~A~~NL~~lf 216 (929)
.+|+.|..+|.+|+.+.|.....+..||.+....++.=.|+-+|-|++...--+..+.-||-.++
T Consensus 68 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~ 132 (208)
T 3urz_A 68 RNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYY 132 (208)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 35678999999999999999999999999999999999999999999987666888998987665
No 57
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=86.81 E-value=1.4 Score=41.45 Aligned_cols=49 Identities=14% Similarity=-0.021 Sum_probs=45.1
Q ss_pred cHHHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhcC
Q 002374 153 EYAAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAV 201 (929)
Q Consensus 153 ~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~ 201 (929)
+|+.|..+|.+|+.+.|.+..+|+.||.+....++.=.|+-+|-+++..
T Consensus 70 ~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 70 QYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp CHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999999999999999999998754
No 58
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=86.47 E-value=0.99 Score=44.87 Aligned_cols=67 Identities=16% Similarity=0.071 Sum_probs=60.8
Q ss_pred ccHHHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhcCCCCChhHHHHHHHHHHHH
Q 002374 152 REYAAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAVDSPFSTARDNLIVAFEKN 219 (929)
Q Consensus 152 ~~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~~Pf~~A~~NL~~lf~k~ 219 (929)
.++..|..+|.+|+.+.|.....+..||.+....++.=+|+-+|-|++... .++.+.-||-.++...
T Consensus 98 g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~ 164 (217)
T 2pl2_A 98 GYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSM 164 (217)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHc
Confidence 457889999999999999999999999999999999999999999999888 8888888887776654
No 59
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=86.31 E-value=1.1 Score=44.13 Aligned_cols=68 Identities=15% Similarity=-0.037 Sum_probs=57.1
Q ss_pred cHHHHHHHHHHHHhcCCCCC-------CchhhhHHHHhccCCchhhHHHHHhhhcCCCC--ChhHHHHHHHHHHHHH
Q 002374 153 EYAAASSYYLQAASLWPSSG-------NPHHQLAILASYSSDELVAVYRYFRSLAVDSP--FSTARDNLIVAFEKNR 220 (929)
Q Consensus 153 ~~~~A~~yY~~A~~l~P~~G-------~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~~P--f~~A~~NL~~lf~k~r 220 (929)
+|..|..+|.+|+.+.|.+. ..|..+|.+....++.=.|+-+|-+++-...- +..+.-||-.++-...
T Consensus 91 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~ 167 (228)
T 4i17_A 91 NNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNG 167 (228)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHH
Confidence 56789999999999999988 66999999999999999999999999876544 5777778876665443
No 60
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=86.07 E-value=1 Score=47.42 Aligned_cols=68 Identities=21% Similarity=0.212 Sum_probs=59.3
Q ss_pred ccHHHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhcCCCCChhHHHHHHHHHHHH
Q 002374 152 REYAAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAVDSPFSTARDNLIVAFEKN 219 (929)
Q Consensus 152 ~~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~~Pf~~A~~NL~~lf~k~ 219 (929)
.+|..|..+|.+|+.+.|.....++.||.++...++.-.|+-+|-+++....-...+..||-.++.+.
T Consensus 227 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 294 (365)
T 4eqf_A 227 GEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINL 294 (365)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHC
Confidence 35789999999999999999999999999999999999999999999877655678888887776654
No 61
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=85.77 E-value=0.84 Score=42.95 Aligned_cols=67 Identities=10% Similarity=-0.027 Sum_probs=58.3
Q ss_pred cHHHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhcCCCCChhHHHHHHHHHHHH
Q 002374 153 EYAAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAVDSPFSTARDNLIVAFEKN 219 (929)
Q Consensus 153 ~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~~Pf~~A~~NL~~lf~k~ 219 (929)
+|..|..+|.+|+.+.|.+...|+.||.++...++.=.|+-+|-|++...--++.+.-|+-.++...
T Consensus 36 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~ 102 (148)
T 2vgx_A 36 XYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQX 102 (148)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHc
Confidence 5678999999999999999999999999999999999999999999877655778877776666543
No 62
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=85.50 E-value=1.2 Score=47.90 Aligned_cols=81 Identities=16% Similarity=0.016 Sum_probs=64.7
Q ss_pred HHHHHhcchhhhhhhhcCCCCccccHHHHHHHHHHHHhcCCCCC---------------CchhhhHHHHhccCCchhhHH
Q 002374 129 RCLIYLGDLARYKGLYGEGDSKSREYAAASSYYLQAASLWPSSG---------------NPHHQLAILASYSSDELVAVY 193 (929)
Q Consensus 129 rCLi~LGDLaRYr~~~~~~~~~~~~~~~A~~yY~~A~~l~P~~G---------------~pynQLAvLa~~~~~~l~AvY 193 (929)
.++..+|.+...+ .+|..|..+|.+|+.+.|... ..|+.||.++...++.=.|+-
T Consensus 148 ~~~~~~g~~~~~~----------g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~ 217 (336)
T 1p5q_A 148 TIVKERGTVYFKE----------GKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIE 217 (336)
T ss_dssp HHHHHHHHHHHHH----------TCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHC----------CCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 3455566664433 357899999999999999995 899999999999999999999
Q ss_pred HHHhhhcCCCCChhHHHHHHHHHHHH
Q 002374 194 RYFRSLAVDSPFSTARDNLIVAFEKN 219 (929)
Q Consensus 194 ~Y~RSL~~~~Pf~~A~~NL~~lf~k~ 219 (929)
+|-+++...--...+.-|+-.++...
T Consensus 218 ~~~~al~~~p~~~~a~~~lg~~~~~~ 243 (336)
T 1p5q_A 218 SCNKALELDSNNEKGLSRRGEAHLAV 243 (336)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHC
Confidence 99999987655777777776665443
No 63
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=85.21 E-value=1.2 Score=43.46 Aligned_cols=68 Identities=13% Similarity=0.005 Sum_probs=57.8
Q ss_pred ccHHHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhcCCCCChhHHHHHHHHHHHH
Q 002374 152 REYAAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAVDSPFSTARDNLIVAFEKN 219 (929)
Q Consensus 152 ~~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~~Pf~~A~~NL~~lf~k~ 219 (929)
.+|..|..+|.+|+.+.|.....++.+|.+....++.-.|+-+|-+++-.......+..++-.++.+.
T Consensus 153 ~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~ 220 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAV 220 (258)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence 35789999999999999999999999999999999999999999999876655677776666665553
No 64
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=85.04 E-value=1.9 Score=44.26 Aligned_cols=70 Identities=14% Similarity=-0.030 Sum_probs=60.1
Q ss_pred ccHHHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhcCCCCChhHHHHHHHHHHHHHh
Q 002374 152 REYAAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAVDSPFSTARDNLIVAFEKNRQ 221 (929)
Q Consensus 152 ~~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~~Pf~~A~~NL~~lf~k~r~ 221 (929)
.+|..|..+|.+|+.+.|.....+..+|.++...++.-.|+-+|-+++-...-...++.+|..+.....+
T Consensus 286 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~ 355 (359)
T 3ieg_A 286 EKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQ 355 (359)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Confidence 3578999999999999999999999999999999999999999999987765577888888777666543
No 65
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=84.99 E-value=1.1 Score=50.75 Aligned_cols=70 Identities=20% Similarity=0.136 Sum_probs=63.2
Q ss_pred ccHHHHHHHHHHHHhcCC---CCCCchhhhHHHHhccCCchhhHHHHHhhhcCCCCChhHHHHHHHHHHHHHh
Q 002374 152 REYAAASSYYLQAASLWP---SSGNPHHQLAILASYSSDELVAVYRYFRSLAVDSPFSTARDNLIVAFEKNRQ 221 (929)
Q Consensus 152 ~~~~~A~~yY~~A~~l~P---~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~~Pf~~A~~NL~~lf~k~r~ 221 (929)
.+|..|..+|.+|+.+.| .....|+.||.++...++.=.|+-+|-+++...--+..++.++..++....+
T Consensus 235 g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~ 307 (474)
T 4abn_A 235 KISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSR 307 (474)
T ss_dssp HHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 568999999999999999 9999999999999999999999999999998776788899999888777653
No 66
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=84.81 E-value=1.1 Score=41.28 Aligned_cols=49 Identities=16% Similarity=-0.030 Sum_probs=45.3
Q ss_pred cHHHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhcC
Q 002374 153 EYAAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAV 201 (929)
Q Consensus 153 ~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~ 201 (929)
+|..|..+|.+|+.+.|.+...|..+|.+....++.=.|+-+|-+++..
T Consensus 67 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 67 LYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp CHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5678999999999999999999999999999999999999999888754
No 67
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=84.61 E-value=1.6 Score=37.56 Aligned_cols=61 Identities=28% Similarity=0.254 Sum_probs=48.4
Q ss_pred cHHHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhcCCCCChhHHHHHH
Q 002374 153 EYAAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAVDSPFSTARDNLI 213 (929)
Q Consensus 153 ~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~~Pf~~A~~NL~ 213 (929)
+|+.|..+|.+++.+.|.....++.+|.+....++.-.|+-+|-+++........+..++-
T Consensus 16 ~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 76 (136)
T 2fo7_A 16 DYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLG 76 (136)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHH
Confidence 4678999999999999999999999999998888888899998888765433444444443
No 68
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=84.59 E-value=1.6 Score=40.09 Aligned_cols=66 Identities=14% Similarity=0.144 Sum_probs=53.6
Q ss_pred cHHHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhcCCCCChhHHHHHHHHHHH
Q 002374 153 EYAAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAVDSPFSTARDNLIVAFEK 218 (929)
Q Consensus 153 ~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~~Pf~~A~~NL~~lf~k 218 (929)
+|..|..+|.+|+.+.|.....+..+|.+....++.-.|+-+|-+++........+..++-.++..
T Consensus 91 ~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 156 (186)
T 3as5_A 91 KYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQ 156 (186)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHH
Confidence 467899999999999999999999999999988998899999988886654455666666555544
No 69
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=84.40 E-value=1.4 Score=43.76 Aligned_cols=78 Identities=15% Similarity=0.124 Sum_probs=57.9
Q ss_pred HHHHHhcchhhhhhhhcCCCCccccHHHHHHHHHHHHhcCCCCCCchhhhHHHHhcc------CCchhhHHHHHhhhcCC
Q 002374 129 RCLIYLGDLARYKGLYGEGDSKSREYAAASSYYLQAASLWPSSGNPHHQLAILASYS------SDELVAVYRYFRSLAVD 202 (929)
Q Consensus 129 rCLi~LGDLaRYr~~~~~~~~~~~~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~------~~~l~AvY~Y~RSL~~~ 202 (929)
.++..||.+..... ....++.+|..||.+|+.+ |....+++.||.++... .|.-.|+.||-+++-
T Consensus 126 ~a~~~Lg~~y~~g~------g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~-- 196 (212)
T 3rjv_A 126 DAQMLLGLIYASGV------HGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCL-- 196 (212)
T ss_dssp HHHHHHHHHHHHTS------SSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHcCC------CCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHH--
Confidence 45667777754432 1235789999999999999 88888999999998643 377889999988864
Q ss_pred CCChhHHHHHHHH
Q 002374 203 SPFSTARDNLIVA 215 (929)
Q Consensus 203 ~Pf~~A~~NL~~l 215 (929)
.-++.|..+|..+
T Consensus 197 ~g~~~A~~~l~~l 209 (212)
T 3rjv_A 197 EGFDTGCEEFDRI 209 (212)
T ss_dssp HTCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHh
Confidence 3566676666543
No 70
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=84.21 E-value=0.96 Score=42.28 Aligned_cols=59 Identities=19% Similarity=0.159 Sum_probs=43.9
Q ss_pred cccHHHHHHHHHHHHhcCCCCCCchhhhHHHHhc----cCCchhhHHHHHhhhcCCCCChhHHHHHH
Q 002374 151 SREYAAASSYYLQAASLWPSSGNPHHQLAILASY----SSDELVAVYRYFRSLAVDSPFSTARDNLI 213 (929)
Q Consensus 151 ~~~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~----~~~~l~AvY~Y~RSL~~~~Pf~~A~~NL~ 213 (929)
.+++.+|..||.+|... .+..+++.||.++.. ..|.-.|+.||-|+.-. -++.|..||.
T Consensus 74 ~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~l~ 136 (138)
T 1klx_A 74 KKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL--GSEDACGILN 136 (138)
T ss_dssp CCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHC-
T ss_pred CccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHh
Confidence 35788899999999887 566788889998887 67888888888888643 4555555543
No 71
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=84.01 E-value=0.59 Score=46.36 Aligned_cols=69 Identities=10% Similarity=-0.037 Sum_probs=52.5
Q ss_pred cHHHHHHHHHHHHhcCCCCCCchhhhHHHHhccC-----------CchhhHHHHHhhhcCCCCChhHHHHHHHHHHHHHh
Q 002374 153 EYAAASSYYLQAASLWPSSGNPHHQLAILASYSS-----------DELVAVYRYFRSLAVDSPFSTARDNLIVAFEKNRQ 221 (929)
Q Consensus 153 ~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~-----------~~l~AvY~Y~RSL~~~~Pf~~A~~NL~~lf~k~r~ 221 (929)
.++.|+.+|.+|+.+.|..-.+|+.||+++...+ +.=.|+-+|-|++...--....+.+|. +.+++.+
T Consensus 61 ~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~-~~~ka~e 139 (158)
T 1zu2_A 61 MIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLE-MTAKAPQ 139 (158)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH-HHHTHHH
T ss_pred HHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHH-HHHhCHh
Confidence 3678999999999999999999999999998654 677789999998876554555544443 4444444
Q ss_pred h
Q 002374 222 S 222 (929)
Q Consensus 222 ~ 222 (929)
.
T Consensus 140 l 140 (158)
T 1zu2_A 140 L 140 (158)
T ss_dssp H
T ss_pred c
Confidence 3
No 72
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=83.95 E-value=1.8 Score=38.06 Aligned_cols=49 Identities=10% Similarity=0.084 Sum_probs=42.1
Q ss_pred cHHHHHHHHHHHHhcCCCC---CCchhhhHHHHhccCCchhhHHHHHhhhcC
Q 002374 153 EYAAASSYYLQAASLWPSS---GNPHHQLAILASYSSDELVAVYRYFRSLAV 201 (929)
Q Consensus 153 ~~~~A~~yY~~A~~l~P~~---G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~ 201 (929)
+|..|..+|.+++.+.|.+ ...+..+|.+....++.=.|+-+|-+.+..
T Consensus 54 ~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 54 NFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp CHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4678999999999999999 777999999999888888888887776643
No 73
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=83.91 E-value=2.1 Score=36.73 Aligned_cols=60 Identities=28% Similarity=0.283 Sum_probs=47.4
Q ss_pred cHHHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhcCCCCChhHHHHH
Q 002374 153 EYAAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAVDSPFSTARDNL 212 (929)
Q Consensus 153 ~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~~Pf~~A~~NL 212 (929)
+|..|..+|.+|+.+.|.....++.+|.+....++.=.|+-+|-+++........+..++
T Consensus 50 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 109 (136)
T 2fo7_A 50 DYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNL 109 (136)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 457899999999999999999999999999988888888888888775433333333333
No 74
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=83.76 E-value=1.4 Score=48.90 Aligned_cols=67 Identities=12% Similarity=0.037 Sum_probs=54.5
Q ss_pred cHHHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhcCCCCChhHHHHHHHHHHHH
Q 002374 153 EYAAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAVDSPFSTARDNLIVAFEKN 219 (929)
Q Consensus 153 ~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~~Pf~~A~~NL~~lf~k~ 219 (929)
+|..|..+|.+|+.+.|.+...|+++|.+....++.-.|+-+|-|++...--+..|+.|+-.++...
T Consensus 147 d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~ 213 (382)
T 2h6f_A 147 DLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEF 213 (382)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHc
Confidence 4778888888888888888888888888888888888888888888876666778888887777664
No 75
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=83.72 E-value=1.3 Score=49.07 Aligned_cols=66 Identities=3% Similarity=-0.154 Sum_probs=59.8
Q ss_pred cHHHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhcCCCCChhHHHHHHHHHHH
Q 002374 153 EYAAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAVDSPFSTARDNLIVAFEK 218 (929)
Q Consensus 153 ~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~~Pf~~A~~NL~~lf~k 218 (929)
+|..|..+|.+|+.+.|.+-..|+.+|.+....++.=.|+=+|-|++...--+..|+.|+-.++..
T Consensus 181 ~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~ 246 (382)
T 2h6f_A 181 DPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISN 246 (382)
T ss_dssp CCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 345799999999999999999999999999999999999999999998877789999999887766
No 76
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=83.05 E-value=1.7 Score=45.40 Aligned_cols=68 Identities=22% Similarity=0.224 Sum_probs=57.5
Q ss_pred ccHHHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhcCCCCChhHHHHHHHHHHHH
Q 002374 152 REYAAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAVDSPFSTARDNLIVAFEKN 219 (929)
Q Consensus 152 ~~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~~Pf~~A~~NL~~lf~k~ 219 (929)
.+|..|..+|.+|+.+.|.....++.||.++...++.-.|+-+|-+++........+..+|-.++.+.
T Consensus 231 g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~ 298 (368)
T 1fch_A 231 GEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINL 298 (368)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC
Confidence 45788999999999999999999999999999999999999999998876555677777777666554
No 77
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=82.81 E-value=1.8 Score=45.02 Aligned_cols=74 Identities=18% Similarity=0.253 Sum_probs=52.7
Q ss_pred HHHHHHhcchhhhhhhhcCCCCccccHHHHHHHHHHHHhcCCCCCCc-------hhhhHHHHhccCCchhhHHHHHhhhc
Q 002374 128 HRCLIYLGDLARYKGLYGEGDSKSREYAAASSYYLQAASLWPSSGNP-------HHQLAILASYSSDELVAVYRYFRSLA 200 (929)
Q Consensus 128 hrCLi~LGDLaRYr~~~~~~~~~~~~~~~A~~yY~~A~~l~P~~G~p-------ynQLAvLa~~~~~~l~AvY~Y~RSL~ 200 (929)
..|+..||++..-. .+|..|..+|.+|+.+.|.++.. |+.+|++....++.-.|+-+|-+++.
T Consensus 158 ~~~~~~lg~~~~~~----------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 158 NKCFIKCADLKALD----------GQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp HHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHHh----------CCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34566666664332 35789999999999999999874 68899999999999999999999998
Q ss_pred CCCCChhHHHH
Q 002374 201 VDSPFSTARDN 211 (929)
Q Consensus 201 ~~~Pf~~A~~N 211 (929)
...-|..++++
T Consensus 228 l~p~~~~~~~~ 238 (292)
T 1qqe_A 228 EDPNFADSRES 238 (292)
T ss_dssp C---------H
T ss_pred hCCCCCCcHHH
Confidence 76667666543
No 78
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=82.75 E-value=0.9 Score=42.51 Aligned_cols=67 Identities=13% Similarity=-0.113 Sum_probs=55.8
Q ss_pred ccHHHHHHHHHHHHhc------------------CCCCCCchhhhHHHHhccCCchhhHHHHHhhhcCCCCChhHHHHHH
Q 002374 152 REYAAASSYYLQAASL------------------WPSSGNPHHQLAILASYSSDELVAVYRYFRSLAVDSPFSTARDNLI 213 (929)
Q Consensus 152 ~~~~~A~~yY~~A~~l------------------~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~~Pf~~A~~NL~ 213 (929)
.+|..|..+|.+|+.+ .|.....|+.+|.++...++.-.|+-+|-+++-..--+..+.-++-
T Consensus 25 ~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g 104 (162)
T 3rkv_A 25 KDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRA 104 (162)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHH
Confidence 4678999999999999 7777889999999999999999999999999987655666666665
Q ss_pred HHHHH
Q 002374 214 VAFEK 218 (929)
Q Consensus 214 ~lf~k 218 (929)
.++..
T Consensus 105 ~~~~~ 109 (162)
T 3rkv_A 105 KARIA 109 (162)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55544
No 79
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=82.71 E-value=1.4 Score=38.55 Aligned_cols=64 Identities=13% Similarity=-0.047 Sum_probs=56.0
Q ss_pred HHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhcCCCCChhHHHHHHHHHHHH
Q 002374 156 AASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAVDSPFSTARDNLIVAFEKN 219 (929)
Q Consensus 156 ~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~~Pf~~A~~NL~~lf~k~ 219 (929)
.|..+|.+|+.+.|.....++.||.++...++.=.|+-+|-+++...--+..+..+|-.++...
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 66 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQ 66 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHc
Confidence 4889999999999999999999999999999999999999999987666777887777666554
No 80
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=82.48 E-value=1.3 Score=41.81 Aligned_cols=67 Identities=18% Similarity=0.199 Sum_probs=53.4
Q ss_pred cHHHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhcCCCCChhHHHHHHHHHHHH
Q 002374 153 EYAAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAVDSPFSTARDNLIVAFEKN 219 (929)
Q Consensus 153 ~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~~Pf~~A~~NL~~lf~k~ 219 (929)
+|..|..+|.+|..+.|.....++.+|.+....++.=.|+-+|-+++...--...+..||-.++.+.
T Consensus 88 ~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~ 154 (184)
T 3vtx_A 88 EKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGK 154 (184)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHC
Confidence 4677888888888888888888888888888888888888888888876555677777776666553
No 81
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=82.19 E-value=1.7 Score=49.72 Aligned_cols=67 Identities=15% Similarity=-0.010 Sum_probs=58.3
Q ss_pred cHHHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhcCCCCChhHHHHHHHHHHHH
Q 002374 153 EYAAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAVDSPFSTARDNLIVAFEKN 219 (929)
Q Consensus 153 ~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~~Pf~~A~~NL~~lf~k~ 219 (929)
+|+.|..+|.+|+.+.|.+...++.||.++...++.-+|+-+|-+++...--...+..||-.++...
T Consensus 72 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 138 (568)
T 2vsy_A 72 RHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRL 138 (568)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence 4678999999999999999999999999999999999999999999877666778888887776654
No 82
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=82.19 E-value=1.7 Score=43.08 Aligned_cols=67 Identities=16% Similarity=-0.049 Sum_probs=60.2
Q ss_pred cHHHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhcCCCCChhHHHHHHHHHHHH
Q 002374 153 EYAAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAVDSPFSTARDNLIVAFEKN 219 (929)
Q Consensus 153 ~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~~Pf~~A~~NL~~lf~k~ 219 (929)
+|..|..+|.+|+.+.|.+...+..||.+....++.=.|+-+|-|++...--+..+..||-.++...
T Consensus 20 ~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~ 86 (217)
T 2pl2_A 20 RYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVAL 86 (217)
T ss_dssp CHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh
Confidence 4678999999999999999999999999999999999999999999877666888999998777665
No 83
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=82.18 E-value=2 Score=40.86 Aligned_cols=65 Identities=14% Similarity=0.032 Sum_probs=51.7
Q ss_pred cHHHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhcCCCCChhHHHHHHHHHH
Q 002374 153 EYAAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAVDSPFSTARDNLIVAFE 217 (929)
Q Consensus 153 ~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~~Pf~~A~~NL~~lf~ 217 (929)
+|..|..+|.+|+.+.|.....++.+|.+....++.-.|+-+|-+++........+..++-.++.
T Consensus 23 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~ 87 (225)
T 2vq2_A 23 DYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLC 87 (225)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 45789999999999999999999999999999899889999988888655445555555544443
No 84
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=82.00 E-value=0.79 Score=40.92 Aligned_cols=61 Identities=16% Similarity=0.069 Sum_probs=48.1
Q ss_pred HHHHHhcchhhhhhhhcCCCCccccHHHHHHHHHHHHhcCCCCCC------chhhhHHHHhccCCchhhHHHHHhhh
Q 002374 129 RCLIYLGDLARYKGLYGEGDSKSREYAAASSYYLQAASLWPSSGN------PHHQLAILASYSSDELVAVYRYFRSL 199 (929)
Q Consensus 129 rCLi~LGDLaRYr~~~~~~~~~~~~~~~A~~yY~~A~~l~P~~G~------pynQLAvLa~~~~~~l~AvY~Y~RSL 199 (929)
+++..||.+.... .+|..|..+|.+|+.+.+..+. .++.+|.++...++.-.|+-+|-+++
T Consensus 10 ~~~~~l~~~~~~~----------~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 76 (164)
T 3ro3_A 10 RAFGNLGNTHYLL----------GNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTL 76 (164)
T ss_dssp HHHHHHHHHHHHT----------TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh----------cCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4566777776554 3577899999999999998885 78889999888888877777776665
No 85
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=81.66 E-value=2.4 Score=44.22 Aligned_cols=68 Identities=19% Similarity=0.034 Sum_probs=56.4
Q ss_pred ccHHHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhcCCCCChhHHHHHHHHHHHH
Q 002374 152 REYAAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAVDSPFSTARDNLIVAFEKN 219 (929)
Q Consensus 152 ~~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~~Pf~~A~~NL~~lf~k~ 219 (929)
.+|..|..+|.+|+.+.|.+...|+.+|.++...++.=.|+-+|-+++...--...+.-++-.++...
T Consensus 18 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 85 (281)
T 2c2l_A 18 RKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEM 85 (281)
T ss_dssp TCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 35778999999999999999999999999999999999999999998876555677777776665543
No 86
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=81.57 E-value=1.7 Score=49.61 Aligned_cols=80 Identities=13% Similarity=-0.001 Sum_probs=64.4
Q ss_pred HHHHhcchhhhhhhhcCCCCccccHHHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhcCCCCChhHH
Q 002374 130 CLIYLGDLARYKGLYGEGDSKSREYAAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAVDSPFSTAR 209 (929)
Q Consensus 130 CLi~LGDLaRYr~~~~~~~~~~~~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~~Pf~~A~ 209 (929)
++..||.+.+.. .+|+.|..+|.+|+.+.|.....++.||.++...++.=+|+-+|-+++...--...+.
T Consensus 25 ~~~~lg~~~~~~----------g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 94 (568)
T 2vsy_A 25 AWLMLADAELGM----------GDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIA 94 (568)
T ss_dssp HHHHHHHHHHHH----------TCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHc----------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHH
Confidence 345566654443 2567899999999999999999999999999999999999999999987655567777
Q ss_pred HHHHHHHHHH
Q 002374 210 DNLIVAFEKN 219 (929)
Q Consensus 210 ~NL~~lf~k~ 219 (929)
.||-.++.+.
T Consensus 95 ~~la~~~~~~ 104 (568)
T 2vsy_A 95 LWLGHALEDA 104 (568)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHc
Confidence 7776666553
No 87
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=81.47 E-value=0.98 Score=48.42 Aligned_cols=80 Identities=18% Similarity=0.119 Sum_probs=60.5
Q ss_pred HHHHHhcchhhhhhhhcCCCCccccHHHHHHHHHHHHhcCCCCCC------chhhhHHHHhccCCchhhHHHHHhhhcC-
Q 002374 129 RCLIYLGDLARYKGLYGEGDSKSREYAAASSYYLQAASLWPSSGN------PHHQLAILASYSSDELVAVYRYFRSLAV- 201 (929)
Q Consensus 129 rCLi~LGDLaRYr~~~~~~~~~~~~~~~A~~yY~~A~~l~P~~G~------pynQLAvLa~~~~~~l~AvY~Y~RSL~~- 201 (929)
.|+..||.+.+.. .+|+.|..+|.+|+.+.|..+. .++.||.++...++.=.|+-||-+++..
T Consensus 185 ~~~~~lg~~~~~~----------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 254 (383)
T 3ulq_A 185 QCHSLFATNFLDL----------KQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVF 254 (383)
T ss_dssp HHHHHHHHHHHHT----------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh----------cCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 4666667665544 3578999999999999998884 8999999999999999999999999973
Q ss_pred ----CCC-ChhHHHHHHHHHHH
Q 002374 202 ----DSP-FSTARDNLIVAFEK 218 (929)
Q Consensus 202 ----~~P-f~~A~~NL~~lf~k 218 (929)
..| ...+..||-.++.+
T Consensus 255 ~~~~~~~~~~~~~~~l~~~~~~ 276 (383)
T 3ulq_A 255 EESNILPSLPQAYFLITQIHYK 276 (383)
T ss_dssp HHTTCGGGHHHHHHHHHHHHHH
T ss_pred HhhccchhHHHHHHHHHHHHHH
Confidence 213 34445555555443
No 88
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=81.37 E-value=0.35 Score=43.04 Aligned_cols=67 Identities=12% Similarity=-0.109 Sum_probs=55.4
Q ss_pred cHHHHHHHHHHHHhc---CCCCCCchhhhHHHHhccCCchhhHHHHHhhhcCCCCChhHHHHHHHHHHHH
Q 002374 153 EYAAASSYYLQAASL---WPSSGNPHHQLAILASYSSDELVAVYRYFRSLAVDSPFSTARDNLIVAFEKN 219 (929)
Q Consensus 153 ~~~~A~~yY~~A~~l---~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~~Pf~~A~~NL~~lf~k~ 219 (929)
+|..|..+|.+|+.+ .|.....+..||.+....++.=.|+-+|-+++...--++.+.-++-.++...
T Consensus 5 ~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 74 (117)
T 3k9i_A 5 LEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNL 74 (117)
T ss_dssp --CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHc
Confidence 456799999999999 5999999999999999999999999999999876555677777776666554
No 89
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=81.23 E-value=3.1 Score=42.22 Aligned_cols=67 Identities=16% Similarity=0.123 Sum_probs=55.2
Q ss_pred cHHHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhcCCCCChhHHHHHHHHHHHH
Q 002374 153 EYAAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAVDSPFSTARDNLIVAFEKN 219 (929)
Q Consensus 153 ~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~~Pf~~A~~NL~~lf~k~ 219 (929)
+|..|..+|.+|+.+.|....++..+|.++...++.-.|+-+|-+++....-...+..++-.++...
T Consensus 140 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~ 206 (330)
T 3hym_B 140 EHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQN 206 (330)
T ss_dssp CHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc
Confidence 5678999999999999999999999999999999998999999888876655666666666655543
No 90
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=81.19 E-value=2.1 Score=48.72 Aligned_cols=63 Identities=14% Similarity=-0.104 Sum_probs=56.0
Q ss_pred cHHHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhcCCCCChhHHHHHHHH
Q 002374 153 EYAAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAVDSPFSTARDNLIVA 215 (929)
Q Consensus 153 ~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~~Pf~~A~~NL~~l 215 (929)
+|+.|..+|.+|+.+.|.....|+.||.++...++.=+|+-+|-+++...--...+..++..+
T Consensus 55 ~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~ 117 (477)
T 1wao_1 55 CYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQEC 117 (477)
T ss_dssp CHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 467899999999999999999999999999999999999999999997755567788887665
No 91
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=81.10 E-value=2.2 Score=39.02 Aligned_cols=65 Identities=12% Similarity=-0.010 Sum_probs=52.3
Q ss_pred cHHHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhcCCCCChhHHHHHHHHHH
Q 002374 153 EYAAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAVDSPFSTARDNLIVAFE 217 (929)
Q Consensus 153 ~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~~Pf~~A~~NL~~lf~ 217 (929)
+|..|..+|.+|+.+.|.....+..+|.+....++.=.|+-+|-+++........+..++-.++.
T Consensus 57 ~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 121 (186)
T 3as5_A 57 AVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALD 121 (186)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999989999998888664445555555544443
No 92
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=81.07 E-value=2.1 Score=41.94 Aligned_cols=68 Identities=13% Similarity=0.035 Sum_probs=55.1
Q ss_pred ccHHHHHHHHHHHHhcCC-CCCCchhhhHHHHhccCCchhhHHHHHhhhcCCCCChhHHHHHHHHHHHH
Q 002374 152 REYAAASSYYLQAASLWP-SSGNPHHQLAILASYSSDELVAVYRYFRSLAVDSPFSTARDNLIVAFEKN 219 (929)
Q Consensus 152 ~~~~~A~~yY~~A~~l~P-~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~~Pf~~A~~NL~~lf~k~ 219 (929)
.+|..|..+|.+|+.+.| .....+..+|.++...++.=.|+-+|-+++-...-...+.-++-.++...
T Consensus 21 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 89 (228)
T 4i17_A 21 KNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDM 89 (228)
T ss_dssp TCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHc
Confidence 356789999999999998 77788888999999999999999999999865544666666666665553
No 93
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=80.96 E-value=1.7 Score=49.46 Aligned_cols=69 Identities=16% Similarity=0.084 Sum_probs=60.8
Q ss_pred cccHHHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhcCCCCChhHHHHHHHHHHHH
Q 002374 151 SREYAAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAVDSPFSTARDNLIVAFEKN 219 (929)
Q Consensus 151 ~~~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~~Pf~~A~~NL~~lf~k~ 219 (929)
..+|+.|..+|.+|+.+.|.....|+.+|.++...++.=+|+-+|-|++...--...+..|+-.++...
T Consensus 19 ~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~ 87 (477)
T 1wao_1 19 AKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMAL 87 (477)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 357899999999999999999999999999999999999999999999987666788888887766553
No 94
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=80.80 E-value=1.7 Score=39.57 Aligned_cols=48 Identities=17% Similarity=0.178 Sum_probs=40.8
Q ss_pred cHHHHHHHHHHHHhcCCCCCC-------chhhhHHHHhccCCchhhHHHHHhhhc
Q 002374 153 EYAAASSYYLQAASLWPSSGN-------PHHQLAILASYSSDELVAVYRYFRSLA 200 (929)
Q Consensus 153 ~~~~A~~yY~~A~~l~P~~G~-------pynQLAvLa~~~~~~l~AvY~Y~RSL~ 200 (929)
+|..|..+|.+|+.+.|.... .|+.||.+....++.=.|+-+|-++|.
T Consensus 57 ~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 57 KFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 467899999999999998864 677778888888889999999999885
No 95
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=80.58 E-value=3.1 Score=44.20 Aligned_cols=64 Identities=27% Similarity=0.305 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhcCCCCChhHHHHHHHHHH
Q 002374 154 YAAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAVDSPFSTARDNLIVAFE 217 (929)
Q Consensus 154 ~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~~Pf~~A~~NL~~lf~ 217 (929)
+..|..+|.+|+.+.|.....++.||.+....++.=+|+-+|-+++.....+..+..+|-.++.
T Consensus 287 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 350 (388)
T 1w3b_A 287 VAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQ 350 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 4456666666666666666666666666665555555655555555443334555555555443
No 96
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=80.23 E-value=0.63 Score=42.26 Aligned_cols=48 Identities=19% Similarity=0.015 Sum_probs=42.8
Q ss_pred cHHHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhc
Q 002374 153 EYAAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLA 200 (929)
Q Consensus 153 ~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~ 200 (929)
++..|..+|.+|+.+.|.....+..||.+....++.-+|+-+|-+++.
T Consensus 66 ~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 66 KDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLL 113 (121)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 467899999999999999999999999999988888888888877664
No 97
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=80.20 E-value=1.6 Score=45.56 Aligned_cols=68 Identities=18% Similarity=0.136 Sum_probs=56.1
Q ss_pred ccHHHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhcCCCCC-----------hhHHHHHHHHHHHH
Q 002374 152 REYAAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAVDSPF-----------STARDNLIVAFEKN 219 (929)
Q Consensus 152 ~~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~~Pf-----------~~A~~NL~~lf~k~ 219 (929)
.+|..|..+|.+|+.+.|.....++.||.++...++.-.|+-+|-+++...... ..++.+|-.++...
T Consensus 265 g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 343 (368)
T 1fch_A 265 NQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSML 343 (368)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHh
Confidence 467899999999999999999999999999999999999999999988643323 45666666666554
No 98
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=79.97 E-value=2.9 Score=36.60 Aligned_cols=66 Identities=15% Similarity=0.065 Sum_probs=52.4
Q ss_pred ccHHHHHHHHHHHHhcCCCCC---CchhhhHHHHhccCCchhhHHHHHhhhcCCCCC---hhHHHHHHHHHH
Q 002374 152 REYAAASSYYLQAASLWPSSG---NPHHQLAILASYSSDELVAVYRYFRSLAVDSPF---STARDNLIVAFE 217 (929)
Q Consensus 152 ~~~~~A~~yY~~A~~l~P~~G---~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~~Pf---~~A~~NL~~lf~ 217 (929)
.+|..|..+|.+++...|.+. ..+..+|.++...++.=.|+-+|-+++....-. +.+.-++-.++.
T Consensus 16 ~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 16 GKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp TCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 467899999999999999998 699999999999999999999999887643323 444555544443
No 99
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=79.45 E-value=3 Score=40.40 Aligned_cols=66 Identities=14% Similarity=0.101 Sum_probs=50.1
Q ss_pred cHHHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhcCCCCChhHHHHHHHHHHH
Q 002374 153 EYAAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAVDSPFSTARDNLIVAFEK 218 (929)
Q Consensus 153 ~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~~Pf~~A~~NL~~lf~k 218 (929)
+|..|..+|.+|+.+.|.....+..+|.++...++.=.|+-+|-+++........+..++-.++.+
T Consensus 106 ~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 171 (243)
T 2q7f_A 106 MYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLAN 171 (243)
T ss_dssp CHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH
Confidence 467889999999999999988999999998888888888888888876544455555555444433
No 100
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=78.78 E-value=3.3 Score=41.76 Aligned_cols=62 Identities=15% Similarity=0.193 Sum_probs=46.9
Q ss_pred cHHHHHHHHHHHHhcCCCCCCchhhhHHHHhc----cCCchhhHHHHHhhhcCCCCChhHHHHHHHHHHH
Q 002374 153 EYAAASSYYLQAASLWPSSGNPHHQLAILASY----SSDELVAVYRYFRSLAVDSPFSTARDNLIVAFEK 218 (929)
Q Consensus 153 ~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~----~~~~l~AvY~Y~RSL~~~~Pf~~A~~NL~~lf~k 218 (929)
++..|..||.+|+. |.....++.||.++.. .++.-.|+.+|-|++-.. .+.+.-+|-.++..
T Consensus 21 ~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~ 86 (273)
T 1ouv_A 21 DFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGNLYYS 86 (273)
T ss_dssp CHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhC
Confidence 46778888888888 6777788888888887 788888888888887553 56666666655554
No 101
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=78.60 E-value=3.5 Score=40.53 Aligned_cols=48 Identities=13% Similarity=-0.054 Sum_probs=44.4
Q ss_pred cHHHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhc
Q 002374 153 EYAAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLA 200 (929)
Q Consensus 153 ~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~ 200 (929)
+|..|..+|.+|+.+.|.....++.+|.+....++.-+|+-+|-+++.
T Consensus 86 ~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 133 (252)
T 2ho1_A 86 EPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQ 133 (252)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 567899999999999999999999999999999999999999999886
No 102
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=78.45 E-value=2 Score=48.46 Aligned_cols=66 Identities=18% Similarity=0.117 Sum_probs=56.1
Q ss_pred ccH-HHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhcCCCCChhHHHHHHHHHHH
Q 002374 152 REY-AAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAVDSPFSTARDNLIVAFEK 218 (929)
Q Consensus 152 ~~~-~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~~Pf~~A~~NL~~lf~k 218 (929)
.+| ..|..+|.+|+.+.|.....|+.||.++...++.-.|+-+|-+++... |-..+..+|-.++..
T Consensus 116 g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~lg~~~~~ 182 (474)
T 4abn_A 116 PDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHC-KNKVSLQNLSMVLRQ 182 (474)
T ss_dssp SSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC-CCHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCHHHHHHHHHHHHH
Confidence 457 789999999999999999999999999999999999999999998764 555666666655544
No 103
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=77.91 E-value=4.2 Score=43.70 Aligned_cols=69 Identities=13% Similarity=-0.044 Sum_probs=56.7
Q ss_pred ccHHHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhcCCCCChhHHHHHHHHHHHHH
Q 002374 152 REYAAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAVDSPFSTARDNLIVAFEKNR 220 (929)
Q Consensus 152 ~~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~~Pf~~A~~NL~~lf~k~r 220 (929)
.+|..|..+|.+|+.+.|.....|..||.++...++.=.|+-+|-+++-..--.+.+..+|..+....+
T Consensus 309 g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 377 (450)
T 2y4t_A 309 EKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLK 377 (450)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhh
Confidence 457889999999999999999999999999999999999999998888754446777777765554443
No 104
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=77.89 E-value=4.3 Score=40.15 Aligned_cols=54 Identities=17% Similarity=0.121 Sum_probs=47.4
Q ss_pred cHHHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhcCCCCCh
Q 002374 153 EYAAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAVDSPFS 206 (929)
Q Consensus 153 ~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~~Pf~ 206 (929)
+|..|..+|.+|+.+.|.....++.+|.+....++.-.|+-+|-+++.......
T Consensus 92 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 145 (275)
T 1xnf_A 92 NFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDP 145 (275)
T ss_dssp CHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred CHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCh
Confidence 567899999999999999999999999999999999999999999886543333
No 105
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=77.52 E-value=3.9 Score=39.61 Aligned_cols=65 Identities=14% Similarity=-0.050 Sum_probs=52.9
Q ss_pred cHHHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhcCCCCChhHHHHHHHHHH
Q 002374 153 EYAAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAVDSPFSTARDNLIVAFE 217 (929)
Q Consensus 153 ~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~~Pf~~A~~NL~~lf~ 217 (929)
++..|..+|.+|+.+.|.....++.+|.+....++.-.|+-+|-+++........+..++-.++.
T Consensus 72 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 136 (243)
T 2q7f_A 72 ELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLV 136 (243)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999998888655445555555544443
No 106
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=77.08 E-value=1.3 Score=48.38 Aligned_cols=49 Identities=16% Similarity=0.085 Sum_probs=24.6
Q ss_pred cHHHHHHHHHHHHhcC------------------------CCCCCchhhhHHHHhccCCchhhHHHHHhhhcC
Q 002374 153 EYAAASSYYLQAASLW------------------------PSSGNPHHQLAILASYSSDELVAVYRYFRSLAV 201 (929)
Q Consensus 153 ~~~~A~~yY~~A~~l~------------------------P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~ 201 (929)
+++.|..+|.+|+.+. |.....|+.||.++...++.=.|+-+|-|+|-.
T Consensus 387 ~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~ 459 (472)
T 4g1t_A 387 CEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLES 459 (472)
T ss_dssp CHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------
T ss_pred CHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 4566777777776664 555667777777777667777777777776643
No 107
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=76.92 E-value=4.7 Score=38.31 Aligned_cols=48 Identities=17% Similarity=0.136 Sum_probs=44.5
Q ss_pred cHHHHHHHHHHHHhcCCCCCCchhhhHHHHhcc-CCchhhHHHHHhhhc
Q 002374 153 EYAAASSYYLQAASLWPSSGNPHHQLAILASYS-SDELVAVYRYFRSLA 200 (929)
Q Consensus 153 ~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~-~~~l~AvY~Y~RSL~ 200 (929)
+|..|..+|.+|+.+.|.....++.+|.+.... ++.-.|+-+|-+++.
T Consensus 57 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~ 105 (225)
T 2vq2_A 57 VNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALA 105 (225)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHc
Confidence 467899999999999999999999999999999 999999999999887
No 108
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=76.10 E-value=2.6 Score=47.47 Aligned_cols=67 Identities=18% Similarity=-0.043 Sum_probs=56.7
Q ss_pred ccHHHHHHHHHHHHhcCCCC---------------CCchhhhHHHHhccCCchhhHHHHHhhhcCCCCChhHHHHHHHHH
Q 002374 152 REYAAASSYYLQAASLWPSS---------------GNPHHQLAILASYSSDELVAVYRYFRSLAVDSPFSTARDNLIVAF 216 (929)
Q Consensus 152 ~~~~~A~~yY~~A~~l~P~~---------------G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~~Pf~~A~~NL~~lf 216 (929)
.+|..|..+|.+|+.+.|.. ...|+.||.++...+++-.|+-+|-++|...--...|.-|+-.++
T Consensus 282 g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~ 361 (457)
T 1kt0_A 282 GKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQ 361 (457)
T ss_dssp TCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 46789999999999999999 489999999999999999999999999987655666666665555
Q ss_pred HH
Q 002374 217 EK 218 (929)
Q Consensus 217 ~k 218 (929)
..
T Consensus 362 ~~ 363 (457)
T 1kt0_A 362 LL 363 (457)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 109
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=75.97 E-value=1.3 Score=43.80 Aligned_cols=62 Identities=23% Similarity=0.292 Sum_probs=50.7
Q ss_pred HHHHhcchhhhhhhhcCCCCccccHHHHHHHHHHHHhc--------CCCCCCchhhhHHHHhccCCchhhHHHHHhhhcC
Q 002374 130 CLIYLGDLARYKGLYGEGDSKSREYAAASSYYLQAASL--------WPSSGNPHHQLAILASYSSDELVAVYRYFRSLAV 201 (929)
Q Consensus 130 CLi~LGDLaRYr~~~~~~~~~~~~~~~A~~yY~~A~~l--------~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~ 201 (929)
++..||.+...+ .+|..|..+|.+|+.+ .|.....++.||.++...++.=.|+-+|-+++..
T Consensus 87 ~~~~l~~~~~~~----------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 156 (283)
T 3edt_B 87 TLNNLAVLYGKR----------GKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEI 156 (283)
T ss_dssp HHHHHHHHHHTT----------TCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh----------ccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 455566664443 3567899999999999 5888999999999999999999999999999865
No 110
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=75.84 E-value=5.6 Score=39.03 Aligned_cols=65 Identities=14% Similarity=-0.062 Sum_probs=49.7
Q ss_pred cHHHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhcCCCCChhHHHHHHHHHH
Q 002374 153 EYAAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAVDSPFSTARDNLIVAFE 217 (929)
Q Consensus 153 ~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~~Pf~~A~~NL~~lf~ 217 (929)
+|..|..+|.+|+.+.|.....+..||.++...++.-.|+-+|-+++........+...+..++.
T Consensus 156 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (252)
T 2ho1_A 156 KPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAK 220 (252)
T ss_dssp CHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence 46789999999999999988889999999988888888888888877654445555544444443
No 111
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=75.71 E-value=3.8 Score=41.47 Aligned_cols=67 Identities=18% Similarity=0.299 Sum_probs=56.0
Q ss_pred ccHHHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhcCCCCChhHHHHHHHHHHH
Q 002374 152 REYAAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAVDSPFSTARDNLIVAFEK 218 (929)
Q Consensus 152 ~~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~~Pf~~A~~NL~~lf~k 218 (929)
.+|..|..+|.+|+.+.|.....++.+|.+....++.-.|+-+|-+++........+..++-.++..
T Consensus 186 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~ 252 (327)
T 3cv0_A 186 NNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSN 252 (327)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 3578999999999999999999999999999999999999999999887655566666666665544
No 112
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=75.00 E-value=2.2 Score=45.72 Aligned_cols=81 Identities=16% Similarity=0.029 Sum_probs=58.9
Q ss_pred HHHHHHhcchhhhhhhhcCCCCccccHHHHHHHHHHHHhcCCCCC------CchhhhHHHHhccCCchhhHHHHHhhhcC
Q 002374 128 HRCLIYLGDLARYKGLYGEGDSKSREYAAASSYYLQAASLWPSSG------NPHHQLAILASYSSDELVAVYRYFRSLAV 201 (929)
Q Consensus 128 hrCLi~LGDLaRYr~~~~~~~~~~~~~~~A~~yY~~A~~l~P~~G------~pynQLAvLa~~~~~~l~AvY~Y~RSL~~ 201 (929)
-.|+..||.+.+.. .+|+.|..+|.+|+.+.+..| ..++.||.++...++.=.|+-||-+++..
T Consensus 182 ~~~~~~lg~~y~~~----------~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~ 251 (378)
T 3q15_A 182 IQSLFVIAGNYDDF----------KHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKV 251 (378)
T ss_dssp HHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh----------CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 44666677665443 367899999999999987665 46888999999999999999999999862
Q ss_pred ----CCC-ChhHHHHHHHHHHH
Q 002374 202 ----DSP-FSTARDNLIVAFEK 218 (929)
Q Consensus 202 ----~~P-f~~A~~NL~~lf~k 218 (929)
..| ...+..||-.++.+
T Consensus 252 ~~~~~~~~~~~~~~~la~~~~~ 273 (378)
T 3q15_A 252 SREKVPDLLPKVLFGLSWTLCK 273 (378)
T ss_dssp HHHHCGGGHHHHHHHHHHHHHH
T ss_pred HHhhCChhHHHHHHHHHHHHHH
Confidence 222 34455555555443
No 113
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=74.99 E-value=1.3 Score=50.34 Aligned_cols=49 Identities=10% Similarity=0.014 Sum_probs=44.3
Q ss_pred ccHHHHHHHHHHHHhc--------CCCCCCchhhhHHHHhccCCchhhHHHHHhhhc
Q 002374 152 REYAAASSYYLQAASL--------WPSSGNPHHQLAILASYSSDELVAVYRYFRSLA 200 (929)
Q Consensus 152 ~~~~~A~~yY~~A~~l--------~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~ 200 (929)
.+|+.|+.+|.+|+.+ .|+.|..+|.||.++..+++.=+|+-+|-|+|.
T Consensus 354 g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 354 QDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp TCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 4689999999999977 688899999999999999999999999988873
No 114
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=74.48 E-value=2.6 Score=43.93 Aligned_cols=48 Identities=17% Similarity=-0.049 Sum_probs=44.4
Q ss_pred cHHHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhc
Q 002374 153 EYAAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLA 200 (929)
Q Consensus 153 ~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~ 200 (929)
+|..|..+|.+|+.+.|.+...|+.+|.+....++.=.|+-+|-+++.
T Consensus 53 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 53 QPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp CHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999999999999988875
No 115
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=74.25 E-value=4.1 Score=37.86 Aligned_cols=61 Identities=18% Similarity=-0.013 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHhcCCCCCCchhhhHHHHhc----cCCchhhHHHHHhhhcCCCCChhHHHHHHHHHHH
Q 002374 154 YAAASSYYLQAASLWPSSGNPHHQLAILASY----SSDELVAVYRYFRSLAVDSPFSTARDNLIVAFEK 218 (929)
Q Consensus 154 ~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~----~~~~l~AvY~Y~RSL~~~~Pf~~A~~NL~~lf~k 218 (929)
+.+|..||.+|... .+..+++.||.++.. ..|.-.|+.||-|+.- .-++.|.-||-.++..
T Consensus 41 ~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~--~g~~~a~~~Lg~~y~~ 105 (138)
T 1klx_A 41 KQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACG--LNDQDGCLILGYKQYA 105 (138)
T ss_dssp HHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHc--CCCHHHHHHHHHHHHC
Confidence 45699999999997 667789999999987 7888999999999864 4678888888877765
No 116
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=73.81 E-value=3.1 Score=43.66 Aligned_cols=67 Identities=16% Similarity=0.157 Sum_probs=56.5
Q ss_pred cHHHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhcCCCCChhHHHHHHHHHHHH
Q 002374 153 EYAAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAVDSPFSTARDNLIVAFEKN 219 (929)
Q Consensus 153 ~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~~Pf~~A~~NL~~lf~k~ 219 (929)
+|..|..+|.+|+.+.|.....++.||.++...++.-.|+-+|-+++........+..+|-.++...
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 146 (365)
T 4eqf_A 80 DLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNT 146 (365)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHcc
Confidence 4578999999999999999999999999999999999999999998876555677777777766554
No 117
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=73.78 E-value=2.6 Score=41.14 Aligned_cols=50 Identities=10% Similarity=-0.126 Sum_probs=45.6
Q ss_pred ccHHHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhcC
Q 002374 152 REYAAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAV 201 (929)
Q Consensus 152 ~~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~ 201 (929)
.+|..|..+|.+|+.+.|.....|..+|.+....++.-.|+-+|-+++..
T Consensus 187 ~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 187 MSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 45789999999999999999999999999999999999999999888754
No 118
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=73.73 E-value=5 Score=37.62 Aligned_cols=66 Identities=17% Similarity=0.111 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhcCCCCChhHHHHHHHHHHHHHh
Q 002374 155 AAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAVDSPFSTARDNLIVAFEKNRQ 221 (929)
Q Consensus 155 ~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~~Pf~~A~~NL~~lf~k~r~ 221 (929)
..|..+|.+|+.+.|.....+..||.++...++.-.|+-+|-+++...-.. ..+..+...++..++
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~~~i~~~~~ 163 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPR-INRTQLVESINMAKL 163 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT-SCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC-ccHHHHHHHHHHHHH
Confidence 789999999999999999999999999999999999999999888654433 334445555555443
No 119
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=73.71 E-value=6.7 Score=38.86 Aligned_cols=49 Identities=12% Similarity=-0.076 Sum_probs=43.1
Q ss_pred ccHHHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhc
Q 002374 152 REYAAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLA 200 (929)
Q Consensus 152 ~~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~ 200 (929)
.+|..|..+|.+|+.+.|.....+..||.++...++.-.|+-+|-+++.
T Consensus 17 ~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 65 (272)
T 3u4t_A 17 NNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS 65 (272)
T ss_dssp TCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 3567899999999999999999999999999888888889999988887
No 120
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=73.34 E-value=4.5 Score=38.38 Aligned_cols=63 Identities=11% Similarity=0.021 Sum_probs=42.5
Q ss_pred HHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhcCCCCC--hhHHHHHHHHHHHH
Q 002374 157 ASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAVDSPF--STARDNLIVAFEKN 219 (929)
Q Consensus 157 A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~~Pf--~~A~~NL~~lf~k~ 219 (929)
|..+|.+|+.+.|.+...+..||.+....++.=+|+-+|-+.+...-.+ ..++.+|..++...
T Consensus 93 a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~ 157 (176)
T 2r5s_A 93 ELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSAL 157 (176)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHh
Confidence 5677777777777777777777777777777777777776665543223 44677776666653
No 121
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=73.06 E-value=4.6 Score=41.27 Aligned_cols=66 Identities=18% Similarity=0.024 Sum_probs=41.0
Q ss_pred cHHHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhcCCCCChhHHHHHHHHHHH
Q 002374 153 EYAAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAVDSPFSTARDNLIVAFEK 218 (929)
Q Consensus 153 ~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~~Pf~~A~~NL~~lf~k 218 (929)
+|..|..+|.+|+.+.|.....+..+|.++...++.-.|+-+|-+++....-...+..++-.++..
T Consensus 18 ~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 83 (359)
T 3ieg_A 18 QLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLK 83 (359)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHH
Confidence 455677777777777777777777777777666666666666666664433345555555444433
No 122
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=73.06 E-value=4 Score=41.34 Aligned_cols=51 Identities=18% Similarity=0.095 Sum_probs=46.4
Q ss_pred ccHHHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhcCC
Q 002374 152 REYAAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAVD 202 (929)
Q Consensus 152 ~~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~ 202 (929)
.+|..|..+|.+|+.+.|.....+..||.+....++.-.|+-+|-+++...
T Consensus 220 ~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 270 (327)
T 3cv0_A 220 NRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQ 270 (327)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 468899999999999999999999999999999999999999998887653
No 123
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=72.99 E-value=5.4 Score=35.23 Aligned_cols=66 Identities=20% Similarity=0.090 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhcCCCCChhHHHHHHHHHHHHH
Q 002374 154 YAAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAVDSPFSTARDNLIVAFEKNR 220 (929)
Q Consensus 154 ~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~~Pf~~A~~NL~~lf~k~r 220 (929)
...|+.++.+|+.+.|.+.++..-||.++...+++=.|+=+|-|-+....+ ..-+.-|..-....+
T Consensus 25 ~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~-~~~~~~i~~~I~~A~ 90 (93)
T 3bee_A 25 TDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP-NLDRVTIIESINKAK 90 (93)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT-TCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CccHHHHHHHHHHHH
Confidence 368999999999999999999999999999999999999999998877666 555566666555544
No 124
>1jmt_B Splicing factor U2AF 65 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens}
Probab=72.92 E-value=0.74 Score=32.98 Aligned_cols=12 Identities=50% Similarity=1.121 Sum_probs=11.0
Q ss_pred CCCCCCCCCCcc
Q 002374 788 PPPGFSPVPSKQ 799 (929)
Q Consensus 788 pppgf~~~~~k~ 799 (929)
|||||.||.|.+
T Consensus 11 pP~GyE~vtp~q 22 (28)
T 1jmt_B 11 PPPGFEHITPMQ 22 (28)
T ss_dssp CCTTCTTSCHHH
T ss_pred CCCCccccCHHH
Confidence 899999999875
No 125
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=72.66 E-value=1.8 Score=38.48 Aligned_cols=61 Identities=20% Similarity=0.158 Sum_probs=42.6
Q ss_pred HHHHHhcchhhhhhhhcCCCCccccHHHHHHHHHHHHhcCCCCCC------chhhhHHHHhccCCchhhHHHHHhhh
Q 002374 129 RCLIYLGDLARYKGLYGEGDSKSREYAAASSYYLQAASLWPSSGN------PHHQLAILASYSSDELVAVYRYFRSL 199 (929)
Q Consensus 129 rCLi~LGDLaRYr~~~~~~~~~~~~~~~A~~yY~~A~~l~P~~G~------pynQLAvLa~~~~~~l~AvY~Y~RSL 199 (929)
.++..||.+...+ .+|..|..+|.+|+.+.+..+. .++.+|.+....++.-.|+-+|-+++
T Consensus 50 ~~~~~l~~~~~~~----------g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 116 (164)
T 3ro3_A 50 IAYSNLGNAYIFL----------GEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 116 (164)
T ss_dssp HHHHHHHHHHHHT----------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc----------CCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3556677766554 2567899999999999988754 56666777666666666666665554
No 126
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=72.43 E-value=7.1 Score=40.89 Aligned_cols=72 Identities=14% Similarity=0.077 Sum_probs=49.4
Q ss_pred ccHHHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhcCCCCChhHHHH---HHHHHHHHHhhh
Q 002374 152 REYAAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAVDSPFSTARDN---LIVAFEKNRQSY 223 (929)
Q Consensus 152 ~~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~~Pf~~A~~N---L~~lf~k~r~~~ 223 (929)
.+|+.|..+|.+|+.+.|.+...+++||++....++..+++--|++-+....|-.....+ -...|++...+|
T Consensus 214 g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 214 GRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEYRAKENDFDRLVLQY 288 (291)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHc
Confidence 457788888888888888888888888888888888777766666655555553322222 245566655544
No 127
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=72.35 E-value=3.6 Score=48.85 Aligned_cols=67 Identities=16% Similarity=0.153 Sum_probs=51.1
Q ss_pred ccHHHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhcCCCCChhHHHHHHHHHHHH
Q 002374 152 REYAAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAVDSPFSTARDNLIVAFEKN 219 (929)
Q Consensus 152 ~~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~~Pf~~A~~NL~~lf~k~ 219 (929)
.+|+.|..+|.+|+.+.|....+|+.||.++...++.=. +-+|-+++...--+..+..||-.++.+.
T Consensus 481 g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~ 547 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAE 547 (681)
T ss_dssp TCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHc
Confidence 457788888888888888888888888888887777777 7777777766555777777777666553
No 128
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=72.24 E-value=2.3 Score=44.25 Aligned_cols=48 Identities=15% Similarity=0.077 Sum_probs=42.1
Q ss_pred cHHHHHHHHHHHHhcCCCCCC------chhhhHHHHhcc-CCchhhHHHHHhhhc
Q 002374 153 EYAAASSYYLQAASLWPSSGN------PHHQLAILASYS-SDELVAVYRYFRSLA 200 (929)
Q Consensus 153 ~~~~A~~yY~~A~~l~P~~G~------pynQLAvLa~~~-~~~l~AvY~Y~RSL~ 200 (929)
+|..|..+|.+|+.+.|..|. .++.||.++... ++.=.|+-+|-+++.
T Consensus 92 ~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~ 146 (292)
T 1qqe_A 92 NSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGE 146 (292)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence 567899999999999999986 688899999886 888899999988874
No 129
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=71.93 E-value=3.8 Score=43.50 Aligned_cols=67 Identities=18% Similarity=0.228 Sum_probs=53.4
Q ss_pred ccHHHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhcCCCCChhHHHHHHHHHHH
Q 002374 152 REYAAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAVDSPFSTARDNLIVAFEK 218 (929)
Q Consensus 152 ~~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~~Pf~~A~~NL~~lf~k 218 (929)
.+|+.|..+|.+|+.+.|.....|+.||.+....++.-.|+-+|-+++....-+..+..++-.++..
T Consensus 149 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 215 (388)
T 1w3b_A 149 GRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKE 215 (388)
T ss_dssp SCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 3567899999999999999999999999999988888889999988887654466666666555543
No 130
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=70.53 E-value=2.6 Score=41.54 Aligned_cols=68 Identities=15% Similarity=-0.041 Sum_probs=58.8
Q ss_pred ccHHHHHHHHHHHHhcCCCCCCchhh----------------hHHHHhccCCchhhHHHHHhhhcCCCCChhHHHHHHHH
Q 002374 152 REYAAASSYYLQAASLWPSSGNPHHQ----------------LAILASYSSDELVAVYRYFRSLAVDSPFSTARDNLIVA 215 (929)
Q Consensus 152 ~~~~~A~~yY~~A~~l~P~~G~pynQ----------------LAvLa~~~~~~l~AvY~Y~RSL~~~~Pf~~A~~NL~~l 215 (929)
.+|..|..+|.+|+.+.|.+...|.. ||.++...++.=.|+-+|-+++-..--+..+.-+|-.+
T Consensus 18 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 97 (208)
T 3urz_A 18 GQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEM 97 (208)
T ss_dssp TCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 35678999999999999999999999 99999999999999999999987665578888888777
Q ss_pred HHHH
Q 002374 216 FEKN 219 (929)
Q Consensus 216 f~k~ 219 (929)
+...
T Consensus 98 ~~~~ 101 (208)
T 3urz_A 98 QVCR 101 (208)
T ss_dssp HHHH
T ss_pred HHHc
Confidence 6654
No 131
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=70.42 E-value=3.4 Score=39.66 Aligned_cols=50 Identities=10% Similarity=-0.026 Sum_probs=45.1
Q ss_pred cHHHHHHHHHHHHhcCCCCC----------------CchhhhHHHHhccCCchhhHHHHHhhhcCC
Q 002374 153 EYAAASSYYLQAASLWPSSG----------------NPHHQLAILASYSSDELVAVYRYFRSLAVD 202 (929)
Q Consensus 153 ~~~~A~~yY~~A~~l~P~~G----------------~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~ 202 (929)
+|..|..+|.+|+.+.|.+. ..++.+|.++...++.-.|+-+|-+++...
T Consensus 86 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 86 KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 56789999999999999988 899999999999999999999999988654
No 132
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=70.26 E-value=2.2 Score=41.96 Aligned_cols=60 Identities=22% Similarity=0.166 Sum_probs=47.6
Q ss_pred HHHHhcchhhhhhhhcCCCCccccHHHHHHHHHHHHhcC--------CCCCCchhhhHHHHhccCCchhhHHHHHhhh
Q 002374 130 CLIYLGDLARYKGLYGEGDSKSREYAAASSYYLQAASLW--------PSSGNPHHQLAILASYSSDELVAVYRYFRSL 199 (929)
Q Consensus 130 CLi~LGDLaRYr~~~~~~~~~~~~~~~A~~yY~~A~~l~--------P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL 199 (929)
++..||.+.... .+|..|..+|.+|+.+. |..+..++.||.++...++.=.|+-+|-+++
T Consensus 45 ~~~~l~~~~~~~----------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 112 (283)
T 3edt_B 45 MLNILALVYRDQ----------NKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRAL 112 (283)
T ss_dssp HHHHHHHHHHHT----------TCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc----------ccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 455566665444 24678999999999884 7788899999999999998888888887776
No 133
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=69.72 E-value=3.1 Score=44.78 Aligned_cols=66 Identities=14% Similarity=-0.134 Sum_probs=54.0
Q ss_pred ccHHHHHHHHHHHHhcCCCCC-----------------CchhhhHHHHhccCCchhhHHHHHhhhcCCCCChhHHHHHHH
Q 002374 152 REYAAASSYYLQAASLWPSSG-----------------NPHHQLAILASYSSDELVAVYRYFRSLAVDSPFSTARDNLIV 214 (929)
Q Consensus 152 ~~~~~A~~yY~~A~~l~P~~G-----------------~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~~Pf~~A~~NL~~ 214 (929)
.+|..|..+|.+|+.+.|... ..|+.||.++...++.-.|+-+|-++|...--...+.-|+-.
T Consensus 193 g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~ 272 (338)
T 2if4_A 193 EKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGK 272 (338)
T ss_dssp SCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 468899999999999999876 389999999999999999999999999765445666666555
Q ss_pred HHH
Q 002374 215 AFE 217 (929)
Q Consensus 215 lf~ 217 (929)
++.
T Consensus 273 a~~ 275 (338)
T 2if4_A 273 AKA 275 (338)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 134
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=69.71 E-value=3.4 Score=45.36 Aligned_cols=67 Identities=16% Similarity=0.091 Sum_probs=55.5
Q ss_pred ccHHHHHHHHHHHHh----------------cCCCCCCchhhhHHHHhccCCchhhHHHHHhhhcCCCCChhHHHHHHHH
Q 002374 152 REYAAASSYYLQAAS----------------LWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAVDSPFSTARDNLIVA 215 (929)
Q Consensus 152 ~~~~~A~~yY~~A~~----------------l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~~Pf~~A~~NL~~l 215 (929)
.+|..|..+|.+|+. +.|.....|+.||.++...++.=.|+-+|-+++....-...|.-++-.+
T Consensus 237 g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~ 316 (370)
T 1ihg_A 237 QNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQG 316 (370)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 468899999999999 7788889999999999999999999999999997654466666666555
Q ss_pred HHH
Q 002374 216 FEK 218 (929)
Q Consensus 216 f~k 218 (929)
+..
T Consensus 317 ~~~ 319 (370)
T 1ihg_A 317 WQG 319 (370)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 135
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=69.47 E-value=4.7 Score=42.21 Aligned_cols=71 Identities=14% Similarity=0.081 Sum_probs=49.7
Q ss_pred HHHHHhcchhhhhhhhcCCCCccccHHHHHHHHHHHHhcCCCCCC------chhhhHHHHhccCCchhhHHHHHhhhcCC
Q 002374 129 RCLIYLGDLARYKGLYGEGDSKSREYAAASSYYLQAASLWPSSGN------PHHQLAILASYSSDELVAVYRYFRSLAVD 202 (929)
Q Consensus 129 rCLi~LGDLaRYr~~~~~~~~~~~~~~~A~~yY~~A~~l~P~~G~------pynQLAvLa~~~~~~l~AvY~Y~RSL~~~ 202 (929)
.|+..||.+.+-. .+|..|..+|.+|+.+.|.++. .+..+|.+....++.-.|+-+|-+++ ..
T Consensus 156 ~~~~~lg~~~~~~----------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~ 224 (307)
T 2ifu_A 156 ELIGKASRLLVRQ----------QKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SI 224 (307)
T ss_dssp HHHHHHHHHHHHT----------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TS
T ss_pred HHHHHHHHHHHHc----------CCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CC
Confidence 4555666653322 3577899999999998887765 56666777777788888999999988 43
Q ss_pred CCChhHHH
Q 002374 203 SPFSTARD 210 (929)
Q Consensus 203 ~Pf~~A~~ 210 (929)
.-|..+++
T Consensus 225 p~~~~~~e 232 (307)
T 2ifu_A 225 PGFSGSED 232 (307)
T ss_dssp TTSTTSHH
T ss_pred CCCCCCHH
Confidence 33555443
No 136
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=69.28 E-value=3.3 Score=39.14 Aligned_cols=61 Identities=18% Similarity=0.129 Sum_probs=45.6
Q ss_pred HHHHHhcchhhhhhhhcCCCCccccHHHHHHHHHHHHhcCCCCCCch------hhhHHHHhccCCchhhHHHHHhhh
Q 002374 129 RCLIYLGDLARYKGLYGEGDSKSREYAAASSYYLQAASLWPSSGNPH------HQLAILASYSSDELVAVYRYFRSL 199 (929)
Q Consensus 129 rCLi~LGDLaRYr~~~~~~~~~~~~~~~A~~yY~~A~~l~P~~G~py------nQLAvLa~~~~~~l~AvY~Y~RSL 199 (929)
.++..||.+.+.+. +|..|..+|.+|+.+.+..|.++ +.||.++...++.=.|+-+|-+++
T Consensus 108 ~~~~~lg~~~~~~g----------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 174 (203)
T 3gw4_A 108 ANAYEVATVALHFG----------DLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRAR 174 (203)
T ss_dssp HHHHHHHHHHHHHT----------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC----------CHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 45666777766553 46789999999999988888776 677878777777777776666655
No 137
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=68.98 E-value=1.7 Score=50.07 Aligned_cols=50 Identities=14% Similarity=0.101 Sum_probs=44.7
Q ss_pred ccHHHHHHHHHHHHhcC--------CCCCCchhhhHHHHhccCCchhhHHHHHhhhcC
Q 002374 152 REYAAASSYYLQAASLW--------PSSGNPHHQLAILASYSSDELVAVYRYFRSLAV 201 (929)
Q Consensus 152 ~~~~~A~~yY~~A~~l~--------P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~ 201 (929)
.+|+.|+.+|.+|+.+. |..+..+|.||.++...++.=+|+-+|-|+|..
T Consensus 365 g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i 422 (490)
T 3n71_A 365 QAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAI 422 (490)
T ss_dssp TCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 46899999999999773 778999999999999999999999999999843
No 138
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=68.69 E-value=6.6 Score=37.14 Aligned_cols=50 Identities=10% Similarity=-0.009 Sum_probs=43.1
Q ss_pred cccHHHHHHHHHHHHhcCCCCCC--chhhhHHHHhccCCchhhHHHHHhhhc
Q 002374 151 SREYAAASSYYLQAASLWPSSGN--PHHQLAILASYSSDELVAVYRYFRSLA 200 (929)
Q Consensus 151 ~~~~~~A~~yY~~A~~l~P~~G~--pynQLAvLa~~~~~~l~AvY~Y~RSL~ 200 (929)
..+++.|..+|.+|+.+.|.... .+..||.+....++.=+|+-+|-|+|.
T Consensus 121 ~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 121 VGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp TTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 35688999999999999998754 899999999988888889999988874
No 139
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=68.55 E-value=3.8 Score=46.06 Aligned_cols=66 Identities=26% Similarity=0.178 Sum_probs=55.8
Q ss_pred ccHHHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhcCCCCChhHHHHHHHHHH
Q 002374 152 REYAAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAVDSPFSTARDNLIVAFE 217 (929)
Q Consensus 152 ~~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~~Pf~~A~~NL~~lf~ 217 (929)
.+++.|..+|.+|+.+.|.....|..||.++...++.=+|+-+|-+++-..--.+.+..+|..++.
T Consensus 530 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 530 KMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALE 595 (597)
T ss_dssp TCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 457899999999999999999999999999999999999999998888765556777777765543
No 140
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=68.19 E-value=2.5 Score=41.89 Aligned_cols=44 Identities=11% Similarity=-0.062 Sum_probs=36.4
Q ss_pred HHHHHHHHHHhc-------CCCCCCch----hhhHHHHhccCCchhhHHHHHhhh
Q 002374 156 AASSYYLQAASL-------WPSSGNPH----HQLAILASYSSDELVAVYRYFRSL 199 (929)
Q Consensus 156 ~A~~yY~~A~~l-------~P~~G~py----nQLAvLa~~~~~~l~AvY~Y~RSL 199 (929)
.|..+|.+|+.+ .|+.+..| +.+|+.....++.=+|+=+|-|++
T Consensus 75 eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl 129 (159)
T 2hr2_A 75 EALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 129 (159)
T ss_dssp HHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence 366666666666 99999999 999999998898888888887776
No 141
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=67.34 E-value=2.3 Score=40.23 Aligned_cols=61 Identities=10% Similarity=0.125 Sum_probs=43.3
Q ss_pred HHHHHhcchhhhhhhhcCCCCccccHHHHHHHHHHHHhcCC------CCCCchhhhHHHHhccCCchhhHHHHHhhh
Q 002374 129 RCLIYLGDLARYKGLYGEGDSKSREYAAASSYYLQAASLWP------SSGNPHHQLAILASYSSDELVAVYRYFRSL 199 (929)
Q Consensus 129 rCLi~LGDLaRYr~~~~~~~~~~~~~~~A~~yY~~A~~l~P------~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL 199 (929)
+++..||.+...+ .+|+.|..+|.+|+.+.. .....++.||.++...++.=.|+-+|-+++
T Consensus 27 ~~~~~l~~~~~~~----------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 93 (203)
T 3gw4_A 27 GARFMLGYVYAFM----------DRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEER 93 (203)
T ss_dssp HHHHHHHHHHHHT----------TCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh----------CcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4556677665554 256789999999999544 445567788888888787777777766665
No 142
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=66.91 E-value=8.8 Score=38.58 Aligned_cols=63 Identities=16% Similarity=0.113 Sum_probs=51.4
Q ss_pred ccHHHHHHHHHHHHhcCCCCCCchhhhHHHHhc----cCCchhhHHHHHhhhcCCCCChhHHHHHHHHHHH
Q 002374 152 REYAAASSYYLQAASLWPSSGNPHHQLAILASY----SSDELVAVYRYFRSLAVDSPFSTARDNLIVAFEK 218 (929)
Q Consensus 152 ~~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~----~~~~l~AvY~Y~RSL~~~~Pf~~A~~NL~~lf~k 218 (929)
.++..|..||.+|+.+ .....++.||.+... .++.-.|+-+|-|++-.. ...+..||-.++..
T Consensus 92 ~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~ 158 (273)
T 1ouv_A 92 QNTNKALQYYSKACDL--KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLYDA 158 (273)
T ss_dssp CCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHc--CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHc
Confidence 5688999999999998 467789999999988 888999999999998654 55666677666654
No 143
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=66.60 E-value=4.3 Score=43.35 Aligned_cols=63 Identities=11% Similarity=0.082 Sum_probs=51.8
Q ss_pred HHHHHhcchhhhhhhhcCCCCccccHHHHHHHHHHHHhcCCCCCC-------chhhhHHHHhccCCchhhHHHHHhhhcC
Q 002374 129 RCLIYLGDLARYKGLYGEGDSKSREYAAASSYYLQAASLWPSSGN-------PHHQLAILASYSSDELVAVYRYFRSLAV 201 (929)
Q Consensus 129 rCLi~LGDLaRYr~~~~~~~~~~~~~~~A~~yY~~A~~l~P~~G~-------pynQLAvLa~~~~~~l~AvY~Y~RSL~~ 201 (929)
.++..||.+.+.. .+|..|..||.+|+.+.+..+. .++.||.++...++.=.|+-+|-+++-.
T Consensus 144 ~~~~~lg~~~~~~----------~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 213 (383)
T 3ulq_A 144 EFFFKMSESYYYM----------KQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSM 213 (383)
T ss_dssp HHHHHHHHHHHHT----------TCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc----------CCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 4566777775554 3567899999999999888876 7999999999999999999999998843
No 144
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=66.57 E-value=9.4 Score=39.63 Aligned_cols=65 Identities=15% Similarity=0.068 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhcCCCCC--hhHHHHHHHHHHHH
Q 002374 155 AAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAVDSPF--STARDNLIVAFEKN 219 (929)
Q Consensus 155 ~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~~Pf--~~A~~NL~~lf~k~ 219 (929)
..|...|.+|+.+.|++...+..||.+....++.=+|+=+|.+.+...--+ ..|+.+|..+|...
T Consensus 202 ~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~ 268 (287)
T 3qou_A 202 TPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAAL 268 (287)
T ss_dssp CHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHc
Confidence 457889999999999999999999999999999999999999988766556 78999999998875
No 145
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=66.56 E-value=8.5 Score=42.28 Aligned_cols=64 Identities=17% Similarity=0.081 Sum_probs=36.9
Q ss_pred cHHHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhcCCCCChhHHHHHHHHH
Q 002374 153 EYAAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAVDSPFSTARDNLIVAF 216 (929)
Q Consensus 153 ~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~~Pf~~A~~NL~~lf 216 (929)
+|..|..+|.+|+.+.|.....++.+|.+....++.=.|+-+|-+++-.......+..++-.++
T Consensus 325 ~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 388 (537)
T 3fp2_A 325 DYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEIL 388 (537)
T ss_dssp CHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 4556666666666666666666666666666666666666666555544333344444444433
No 146
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=65.11 E-value=4.1 Score=42.67 Aligned_cols=61 Identities=16% Similarity=0.069 Sum_probs=49.8
Q ss_pred HHHHHhcchhhhhhhhcCCCCccccHHHHHHHHHHHHhcCCCCCC------chhhhHHHHhccCCchhhHHHHHhhh
Q 002374 129 RCLIYLGDLARYKGLYGEGDSKSREYAAASSYYLQAASLWPSSGN------PHHQLAILASYSSDELVAVYRYFRSL 199 (929)
Q Consensus 129 rCLi~LGDLaRYr~~~~~~~~~~~~~~~A~~yY~~A~~l~P~~G~------pynQLAvLa~~~~~~l~AvY~Y~RSL 199 (929)
.++..||.+.... .+|..|..+|.+|+.+.|..+. .++.||.++...++.-.|+-+|-+++
T Consensus 188 ~~~~~la~~~~~~----------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 254 (406)
T 3sf4_A 188 RAFGNLGNTHYLL----------GNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTL 254 (406)
T ss_dssp HHHHHHHHHHHHH----------TBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc----------cCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 3556666665544 3578999999999999999998 89999999998888888888887776
No 147
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=65.07 E-value=3.2 Score=43.51 Aligned_cols=49 Identities=14% Similarity=0.049 Sum_probs=40.3
Q ss_pred ccHHHHHHHHHHHHhcCCCCC------CchhhhHHHHhccCCchhhHHHHHhhhc
Q 002374 152 REYAAASSYYLQAASLWPSSG------NPHHQLAILASYSSDELVAVYRYFRSLA 200 (929)
Q Consensus 152 ~~~~~A~~yY~~A~~l~P~~G------~pynQLAvLa~~~~~~l~AvY~Y~RSL~ 200 (929)
.+|..|..+|.+|+.+.|..| ..++.||.++...++.=.|+-+|-+++.
T Consensus 129 g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 183 (307)
T 2ifu_A 129 LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKS 183 (307)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 357889999999999998876 4577888888888888888888887763
No 148
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=65.02 E-value=9.2 Score=41.00 Aligned_cols=64 Identities=16% Similarity=-0.015 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhcCCCCChhHHHHHHHHHH
Q 002374 154 YAAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAVDSPFSTARDNLIVAFE 217 (929)
Q Consensus 154 ~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~~Pf~~A~~NL~~lf~ 217 (929)
|..|..+|.+|+.+.|.....++.+|.++...++.-.|+-+|-+++.....+..+..++-.++.
T Consensus 42 ~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 105 (450)
T 2y4t_A 42 LADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLL 105 (450)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 4456666666666666666666666666665566556666665555444334445545444443
No 149
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=64.00 E-value=3.2 Score=46.94 Aligned_cols=49 Identities=12% Similarity=-0.047 Sum_probs=43.2
Q ss_pred ccHHHHHHHHHHHHhc--------CCCCCCchhhhHHHHhccCCchhhHHHHHhhhc
Q 002374 152 REYAAASSYYLQAASL--------WPSSGNPHHQLAILASYSSDELVAVYRYFRSLA 200 (929)
Q Consensus 152 ~~~~~A~~yY~~A~~l--------~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~ 200 (929)
.+|+.|+.||.+|+.+ .|..|..+|.||.++...++.-+|+-+|-|++.
T Consensus 343 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 343 GLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp TCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 4689999999999966 477899999999999999999999999888873
No 150
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=62.98 E-value=6.8 Score=40.40 Aligned_cols=49 Identities=6% Similarity=-0.090 Sum_probs=44.0
Q ss_pred ccHHHHHHHHHHHHhcCCCCCC------chhhhHHHHhccCCchhhHHHHHhhhc
Q 002374 152 REYAAASSYYLQAASLWPSSGN------PHHQLAILASYSSDELVAVYRYFRSLA 200 (929)
Q Consensus 152 ~~~~~A~~yY~~A~~l~P~~G~------pynQLAvLa~~~~~~l~AvY~Y~RSL~ 200 (929)
.+|..|..+|.+|+.+.+..+. .|+.||.++...++.=.|+-||-+++-
T Consensus 129 ~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 183 (293)
T 3u3w_A 129 VDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILK 183 (293)
T ss_dssp SCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3678999999999999888777 489999999999999999999999994
No 151
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=61.86 E-value=5.2 Score=47.44 Aligned_cols=69 Identities=13% Similarity=-0.107 Sum_probs=62.0
Q ss_pred ccHHHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhcCCCCChhHHHHHHHHHHHHH
Q 002374 152 REYAAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAVDSPFSTARDNLIVAFEKNR 220 (929)
Q Consensus 152 ~~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~~Pf~~A~~NL~~lf~k~r 220 (929)
.+|+.|..+|.+|+.+.|.+...|+.+|.++...++.=+|+-+|-+++...--+..+..||-.++.+..
T Consensus 447 g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g 515 (681)
T 2pzi_A 447 GDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAG 515 (681)
T ss_dssp TCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC
Confidence 468899999999999999999999999999999999999999999999877668889999988876653
No 152
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=61.33 E-value=4.4 Score=43.05 Aligned_cols=60 Identities=17% Similarity=0.087 Sum_probs=47.6
Q ss_pred HHHHhcchhhhhhhhcCCCCccccHHHHHHHHHHHHhcCCCCCC------chhhhHHHHhccCCchhhHHHHHhhh
Q 002374 130 CLIYLGDLARYKGLYGEGDSKSREYAAASSYYLQAASLWPSSGN------PHHQLAILASYSSDELVAVYRYFRSL 199 (929)
Q Consensus 130 CLi~LGDLaRYr~~~~~~~~~~~~~~~A~~yY~~A~~l~P~~G~------pynQLAvLa~~~~~~l~AvY~Y~RSL 199 (929)
++..||.+.... .+|..|..+|.+|+.+.|..+. .++.||.++...++.-.|+-+|-+++
T Consensus 225 ~~~~la~~~~~~----------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 290 (411)
T 4a1s_A 225 ACGNLGNTYYLL----------GDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTL 290 (411)
T ss_dssp HHHHHHHHHHHT----------TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc----------CChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 455556554443 3578999999999999999988 88999999998888888888777665
No 153
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=61.30 E-value=9.7 Score=42.53 Aligned_cols=61 Identities=11% Similarity=-0.032 Sum_probs=49.2
Q ss_pred ccHHHHHHHHHHHHhcCCCCCCchhhhHHHHhcc----CCchhhHHHHHhhhcCCCCChhHHHHHHHH
Q 002374 152 REYAAASSYYLQAASLWPSSGNPHHQLAILASYS----SDELVAVYRYFRSLAVDSPFSTARDNLIVA 215 (929)
Q Consensus 152 ~~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~----~~~l~AvY~Y~RSL~~~~Pf~~A~~NL~~l 215 (929)
.++..|..||.+|....|.....++.||.++... .+.-.|+.||-++. .-++.|.-||-.+
T Consensus 193 ~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~ 257 (452)
T 3e4b_A 193 EQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQL 257 (452)
T ss_dssp HHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHH
Confidence 3678899999999999888888888899988654 56678888888877 5578888888776
No 154
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=60.96 E-value=7.3 Score=40.15 Aligned_cols=62 Identities=6% Similarity=-0.050 Sum_probs=48.1
Q ss_pred HHHHHhcchhhhhhhhcCCCCccccHHHHHHHHHHHH---hcCCCCC----CchhhhHHHHhccCCchhhHHHHHhhhc
Q 002374 129 RCLIYLGDLARYKGLYGEGDSKSREYAAASSYYLQAA---SLWPSSG----NPHHQLAILASYSSDELVAVYRYFRSLA 200 (929)
Q Consensus 129 rCLi~LGDLaRYr~~~~~~~~~~~~~~~A~~yY~~A~---~l~P~~G----~pynQLAvLa~~~~~~l~AvY~Y~RSL~ 200 (929)
.++..||.+.... .+|+.|..||.+|+ ...|... ..++.+|.++...++.=.|+.||-+++-
T Consensus 156 ~~~~~lg~~y~~~----------~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~ 224 (293)
T 2qfc_A 156 YIENAIANIYAEN----------GYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIE 224 (293)
T ss_dssp HHHHHHHHHHHHT----------TCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc----------CCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHH
Confidence 4555666665443 35789999999999 4456532 5889999999999999999999999874
No 155
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=60.60 E-value=12 Score=41.88 Aligned_cols=62 Identities=15% Similarity=-0.047 Sum_probs=52.9
Q ss_pred ccHHHHHHHHHHHHhcCCCCCCchhhhHHH-H--hccCCchhhHHHHHhhhcCCCCChhHHHHHHHHHHH
Q 002374 152 REYAAASSYYLQAASLWPSSGNPHHQLAIL-A--SYSSDELVAVYRYFRSLAVDSPFSTARDNLIVAFEK 218 (929)
Q Consensus 152 ~~~~~A~~yY~~A~~l~P~~G~pynQLAvL-a--~~~~~~l~AvY~Y~RSL~~~~Pf~~A~~NL~~lf~k 218 (929)
+++.+|..||.+|. |.+...++.||.+ . ...++.-.|+.||-|++ ...++.|.-||-.++..
T Consensus 231 ~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa--~~g~~~A~~~Lg~~y~~ 295 (452)
T 3e4b_A 231 PDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGR--AADQPRAELLLGKLYYE 295 (452)
T ss_dssp CCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHH--HTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH--HCCCHHHHHHHHHHHHc
Confidence 57899999999998 9999999999998 4 45678889999999987 44588899999888763
No 156
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=60.48 E-value=7.5 Score=40.06 Aligned_cols=47 Identities=6% Similarity=-0.103 Sum_probs=40.6
Q ss_pred cHHHHHHHHHHHHhcCCCCC------CchhhhHHHHhccCCchhhHHHHHhhh
Q 002374 153 EYAAASSYYLQAASLWPSSG------NPHHQLAILASYSSDELVAVYRYFRSL 199 (929)
Q Consensus 153 ~~~~A~~yY~~A~~l~P~~G------~pynQLAvLa~~~~~~l~AvY~Y~RSL 199 (929)
+|..|..+|.+|+.+.+... ..|+.||.++...++.=.|+-||-+++
T Consensus 130 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal 182 (293)
T 2qfc_A 130 DYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQIL 182 (293)
T ss_dssp CHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 67899999999999887763 467888999999899989999998887
No 157
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=60.36 E-value=3.4 Score=42.66 Aligned_cols=61 Identities=7% Similarity=-0.053 Sum_probs=45.2
Q ss_pred HHHHhcchhhhhhhhcCCCCccccHHHHHHHHHHHHhcCCC-------CCCchhhhHHHHhccCCchhhHHHHHhhhc
Q 002374 130 CLIYLGDLARYKGLYGEGDSKSREYAAASSYYLQAASLWPS-------SGNPHHQLAILASYSSDELVAVYRYFRSLA 200 (929)
Q Consensus 130 CLi~LGDLaRYr~~~~~~~~~~~~~~~A~~yY~~A~~l~P~-------~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~ 200 (929)
|+..||.+.... .+|+.|..||.+|+.+... ....|+.||.++...++.=.|+.||-+++-
T Consensus 157 ~~~~lg~~y~~~----------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~ 224 (293)
T 3u3w_A 157 IENAIANIYAEN----------GYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIE 224 (293)
T ss_dssp HHHHHHHHHHHT----------TCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc----------CCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 566677665443 3577899999999964433 344788888888888888888888888763
No 158
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=59.04 E-value=9.9 Score=39.78 Aligned_cols=68 Identities=15% Similarity=-0.062 Sum_probs=58.9
Q ss_pred ccHHHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhcCCCCChhHHHHHHHHHHHH
Q 002374 152 REYAAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAVDSPFSTARDNLIVAFEKN 219 (929)
Q Consensus 152 ~~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~~Pf~~A~~NL~~lf~k~ 219 (929)
..+..|..+|.+|+...|.....++.+|++....++.=+|.=+|-|++...--++.+..|+..++...
T Consensus 180 ~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~ 247 (291)
T 3mkr_A 180 EKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHL 247 (291)
T ss_dssp THHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 35788999999999999999999999999999999999999999999877655888888887776653
No 159
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=58.85 E-value=6.8 Score=38.69 Aligned_cols=67 Identities=15% Similarity=-0.017 Sum_probs=52.6
Q ss_pred cHHHHHHHHHHHHhcCCCC-------CC-----chhhhHHHHhccCCchhhHHHHHhhhcC-------CCCChhHH----
Q 002374 153 EYAAASSYYLQAASLWPSS-------GN-----PHHQLAILASYSSDELVAVYRYFRSLAV-------DSPFSTAR---- 209 (929)
Q Consensus 153 ~~~~A~~yY~~A~~l~P~~-------G~-----pynQLAvLa~~~~~~l~AvY~Y~RSL~~-------~~Pf~~A~---- 209 (929)
+|..|..+|.+|+.+.|.. -. .|+.+|.+...-+++=+|+=+|-|+|-. .--+..|+
T Consensus 26 ~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~ 105 (159)
T 2hr2_A 26 EYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAV 105 (159)
T ss_dssp CHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHH
Confidence 4567999999999999993 22 8899999999889999999999999976 44466666
Q ss_pred HHHHHHHHHH
Q 002374 210 DNLIVAFEKN 219 (929)
Q Consensus 210 ~NL~~lf~k~ 219 (929)
-|.-..+...
T Consensus 106 ~~rG~aL~~l 115 (159)
T 2hr2_A 106 YSRALALDGL 115 (159)
T ss_dssp HHHHHHHHHT
T ss_pred HhHHHHHHHC
Confidence 6665555543
No 160
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=58.01 E-value=5.2 Score=40.14 Aligned_cols=61 Identities=21% Similarity=0.171 Sum_probs=47.1
Q ss_pred HHHHHhcchhhhhhhhcCCCCccccHHHHHHHHHHHHhc--------CCCCCCchhhhHHHHhccCCchhhHHHHHhhh
Q 002374 129 RCLIYLGDLARYKGLYGEGDSKSREYAAASSYYLQAASL--------WPSSGNPHHQLAILASYSSDELVAVYRYFRSL 199 (929)
Q Consensus 129 rCLi~LGDLaRYr~~~~~~~~~~~~~~~A~~yY~~A~~l--------~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL 199 (929)
.++..||.+.... .+|..|..+|.+|+.+ .|.....++.||.++...++.-.|+-+|-+++
T Consensus 70 ~~~~~la~~~~~~----------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 138 (311)
T 3nf1_A 70 TMLNILALVYRDQ----------NKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRAL 138 (311)
T ss_dssp HHHHHHHHHHHHT----------TCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHC----------CCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 3455566665443 2467899999999988 47778899999999998888888888887765
No 161
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=57.44 E-value=4 Score=43.36 Aligned_cols=63 Identities=17% Similarity=0.087 Sum_probs=51.0
Q ss_pred HHHHHhcchhhhhhhhcCCCCccccHHHHHHHHHHHHhc------CCCCCCchhhhHHHHhccCCchhhHHHHHhhhcC
Q 002374 129 RCLIYLGDLARYKGLYGEGDSKSREYAAASSYYLQAASL------WPSSGNPHHQLAILASYSSDELVAVYRYFRSLAV 201 (929)
Q Consensus 129 rCLi~LGDLaRYr~~~~~~~~~~~~~~~A~~yY~~A~~l------~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~ 201 (929)
+++..||.+.... .+|..|..+|.+|+.+ .|.....++.||.++...++.-.|+-+|-+++..
T Consensus 87 ~~~~~lg~~~~~~----------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 155 (411)
T 4a1s_A 87 AIYSQLGNAYFYL----------GDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTL 155 (411)
T ss_dssp HHHHHHHHHHHHH----------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHC----------CCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3455666665443 2467899999999998 5888889999999999999999999999998854
No 162
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=57.12 E-value=15 Score=39.76 Aligned_cols=65 Identities=17% Similarity=0.021 Sum_probs=41.9
Q ss_pred cHHHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhcCCCCChhHHHHHHHHHH
Q 002374 153 EYAAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAVDSPFSTARDNLIVAFE 217 (929)
Q Consensus 153 ~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~~Pf~~A~~NL~~lf~ 217 (929)
+|..|..+|.+|+.+.|.....+..+|.+....++.-.|+-+|-+++....-...+..++-.++.
T Consensus 319 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 383 (514)
T 2gw1_A 319 NYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILT 383 (514)
T ss_dssp CTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHH
Confidence 45677777777777777777777777777777777667777766666543334455555544443
No 163
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=56.49 E-value=12 Score=39.97 Aligned_cols=65 Identities=22% Similarity=0.284 Sum_probs=52.0
Q ss_pred HHHHHHHhcchhhhhhhhcCCCCccccHHHHHHHHHHHHhcCCCCC------CchhhhHHHHhccCCchhhHHHHHhhhc
Q 002374 127 CHRCLIYLGDLARYKGLYGEGDSKSREYAAASSYYLQAASLWPSSG------NPHHQLAILASYSSDELVAVYRYFRSLA 200 (929)
Q Consensus 127 chrCLi~LGDLaRYr~~~~~~~~~~~~~~~A~~yY~~A~~l~P~~G------~pynQLAvLa~~~~~~l~AvY~Y~RSL~ 200 (929)
-+..+.++|.....+ .+|..|..+|.+|..+.+..+ ..|+.||.++...++.-.|+-||-+++-
T Consensus 100 ~~~~~~~~g~~~~~~----------g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~ 169 (378)
T 3q15_A 100 KYYSLFFRGMYEFDQ----------KEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALD 169 (378)
T ss_dssp HHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH----------CCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 344566777765544 367899999999999976554 4889999999999999999999999985
Q ss_pred C
Q 002374 201 V 201 (929)
Q Consensus 201 ~ 201 (929)
.
T Consensus 170 ~ 170 (378)
T 3q15_A 170 I 170 (378)
T ss_dssp H
T ss_pred H
Confidence 4
No 164
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=55.91 E-value=9.4 Score=39.89 Aligned_cols=61 Identities=18% Similarity=0.101 Sum_probs=48.6
Q ss_pred HHHhcchhhhhhhhcCCCCccccHHHHHHHHHHHHhcCCCC----CCchhhhHHHHhccCCchhhHHHHHhhhcC
Q 002374 131 LIYLGDLARYKGLYGEGDSKSREYAAASSYYLQAASLWPSS----GNPHHQLAILASYSSDELVAVYRYFRSLAV 201 (929)
Q Consensus 131 Li~LGDLaRYr~~~~~~~~~~~~~~~A~~yY~~A~~l~P~~----G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~ 201 (929)
|..+|+..... .+|..|..+|.+|+.+.|.. ...++.||.++...++.-.|+-+|-+++..
T Consensus 12 l~~~g~~~~~~----------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 76 (406)
T 3sf4_A 12 LALEGERLCKS----------GDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTL 76 (406)
T ss_dssp HHHHHHHHHHT----------TCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh----------ccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 45566664443 25678999999999999987 568999999999999999999999888643
No 165
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=55.06 E-value=8.4 Score=38.04 Aligned_cols=67 Identities=10% Similarity=-0.051 Sum_probs=55.4
Q ss_pred cHHHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCc----------hhhHHHHHhhhcCCCCChhHHHHHHHHHHHH
Q 002374 153 EYAAASSYYLQAASLWPSSGNPHHQLAILASYSSDE----------LVAVYRYFRSLAVDSPFSTARDNLIVAFEKN 219 (929)
Q Consensus 153 ~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~----------l~AvY~Y~RSL~~~~Pf~~A~~NL~~lf~k~ 219 (929)
.|+.|+..|.+|+.+.|.....|+++|.+....++. =+|+=.|-|+|...--+..|.-||-..+...
T Consensus 17 ~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 17 LFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 478999999999999999999999999977754432 2789999999888777888888887776553
No 166
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=54.87 E-value=4.7 Score=40.48 Aligned_cols=49 Identities=22% Similarity=0.340 Sum_probs=43.5
Q ss_pred cHHHHHHHHHHHHhcC--------CCCCCchhhhHHHHhccCCchhhHHHHHhhhcC
Q 002374 153 EYAAASSYYLQAASLW--------PSSGNPHHQLAILASYSSDELVAVYRYFRSLAV 201 (929)
Q Consensus 153 ~~~~A~~yY~~A~~l~--------P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~ 201 (929)
+|..|..+|.+|+.+. |.....++.||.+....++.-.|+-+|-+++-.
T Consensus 126 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 182 (311)
T 3nf1_A 126 KYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEI 182 (311)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5678999999999985 777888999999999999999999999998864
No 167
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=54.52 E-value=21 Score=38.59 Aligned_cols=66 Identities=17% Similarity=0.045 Sum_probs=55.8
Q ss_pred ccHHHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhcCCCCChhHHHHHHHHHHH
Q 002374 152 REYAAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAVDSPFSTARDNLIVAFEK 218 (929)
Q Consensus 152 ~~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~~Pf~~A~~NL~~lf~k 218 (929)
.+|..|..+|.+|+.+.|. ...+..+|.++...++.-.|+-+|-+++........+..++-.++..
T Consensus 251 ~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 316 (514)
T 2gw1_A 251 NDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFI 316 (514)
T ss_dssp SCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHH
Confidence 4678999999999999999 99999999999999999999999999887665566677666665554
No 168
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=54.40 E-value=10 Score=37.91 Aligned_cols=49 Identities=18% Similarity=0.118 Sum_probs=43.1
Q ss_pred cHHHHHHHHHHHHhcCCCC----CCchhhhHHHHhccCCchhhHHHHHhhhcC
Q 002374 153 EYAAASSYYLQAASLWPSS----GNPHHQLAILASYSSDELVAVYRYFRSLAV 201 (929)
Q Consensus 153 ~~~~A~~yY~~A~~l~P~~----G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~ 201 (929)
+|..|..+|.+|+.+.|.. +..++.+|.++...++.-.|+-+|-+++..
T Consensus 20 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 72 (338)
T 3ro2_A 20 DCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTL 72 (338)
T ss_dssp CHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5678999999999999987 678999999999999999999998887743
No 169
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=53.78 E-value=16 Score=40.06 Aligned_cols=66 Identities=9% Similarity=-0.021 Sum_probs=40.5
Q ss_pred ccHHHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhcCCCCChhHHHHHHHHHH
Q 002374 152 REYAAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAVDSPFSTARDNLIVAFE 217 (929)
Q Consensus 152 ~~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~~Pf~~A~~NL~~lf~ 217 (929)
.+|..|..+|.+|+.+.|.....++.+|.++...++.-.|+-+|-+++....-...+..++-.++.
T Consensus 290 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 355 (537)
T 3fp2_A 290 ENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLY 355 (537)
T ss_dssp SCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 345667777777777777777777777777666666666666666666543334444545444443
No 170
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=53.20 E-value=7.4 Score=43.33 Aligned_cols=79 Identities=18% Similarity=0.104 Sum_probs=45.7
Q ss_pred HHHHHhcchhhhhhhhcCCCCccccHHHHHHHHHHHHhcCCCCCCchhhhHHHHhc----cCCchhhHHHHHhhhcCCCC
Q 002374 129 RCLIYLGDLARYKGLYGEGDSKSREYAAASSYYLQAASLWPSSGNPHHQLAILASY----SSDELVAVYRYFRSLAVDSP 204 (929)
Q Consensus 129 rCLi~LGDLaRYr~~~~~~~~~~~~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~----~~~~l~AvY~Y~RSL~~~~P 204 (929)
.++..||.+.... + ...++.+|..||.+|+.. .+...++.||.++.. ..+.-.|+-||-|++-. .
T Consensus 329 ~a~~~lg~~y~~~---g----~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~ 397 (490)
T 2xm6_A 329 TAQANLGAIYFRL---G----SEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ--G 397 (490)
T ss_dssp HHHHHHHHHHHHS---C----CHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--T
T ss_pred HHHHHHHHHHHhC---C----CcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC--C
Confidence 3455666664332 0 123456677777777665 445566667766666 56666666666666542 3
Q ss_pred ChhHHHHHHHHHHH
Q 002374 205 FSTARDNLIVAFEK 218 (929)
Q Consensus 205 f~~A~~NL~~lf~k 218 (929)
.+.|..||-.++.+
T Consensus 398 ~~~a~~~Lg~~y~~ 411 (490)
T 2xm6_A 398 LSAAQVQLGEIYYY 411 (490)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHc
Confidence 45666666655554
No 171
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=52.47 E-value=7 Score=39.18 Aligned_cols=60 Identities=15% Similarity=0.045 Sum_probs=45.1
Q ss_pred HHHHhcchhhhhhhhcCCCCccccHHHHHHHHHHHHhcCCCCCC------chhhhHHHHhccCCchhhHHHHHhhh
Q 002374 130 CLIYLGDLARYKGLYGEGDSKSREYAAASSYYLQAASLWPSSGN------PHHQLAILASYSSDELVAVYRYFRSL 199 (929)
Q Consensus 130 CLi~LGDLaRYr~~~~~~~~~~~~~~~A~~yY~~A~~l~P~~G~------pynQLAvLa~~~~~~l~AvY~Y~RSL 199 (929)
++..+|.+.... .+|..|..+|.+|+.+.|..+. .+..+|.+....++.-.|+-+|-+++
T Consensus 185 ~~~~l~~~~~~~----------~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 250 (338)
T 3ro2_A 185 AFGNLGNTHYLL----------GNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTL 250 (338)
T ss_dssp HHHHHHHHHHHH----------TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh----------CCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 455566555443 3577899999999999998888 78888888887777777777776655
No 172
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=50.75 E-value=20 Score=39.82 Aligned_cols=82 Identities=18% Similarity=0.100 Sum_probs=60.8
Q ss_pred HHHHHHhcchhhhhhhhcCCCCccccHHHHHHHHHHHHhcCCCCCCchhhhHHHHhccC---CchhhHHHHHhhhcCCCC
Q 002374 128 HRCLIYLGDLARYKGLYGEGDSKSREYAAASSYYLQAASLWPSSGNPHHQLAILASYSS---DELVAVYRYFRSLAVDSP 204 (929)
Q Consensus 128 hrCLi~LGDLaRYr~~~~~~~~~~~~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~---~~l~AvY~Y~RSL~~~~P 204 (929)
-.++..||.+...... ....++.+|..||.+|.... ...+++.||.++...+ +.=.|+.||-|++-. .
T Consensus 291 ~~a~~~Lg~~y~~~~~-----g~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~ 361 (490)
T 2xm6_A 291 SDGQYYLAHLYDKGAE-----GVAKNREQAISWYTKSAEQG--DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--G 361 (490)
T ss_dssp HHHHHHHHHHHHHCBT-----TBCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--T
T ss_pred HHHHHHHHHHHHcCCC-----CCcCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--C
Confidence 3456778877554311 12356889999999999874 4568999999987654 567799999998754 5
Q ss_pred ChhHHHHHHHHHHH
Q 002374 205 FSTARDNLIVAFEK 218 (929)
Q Consensus 205 f~~A~~NL~~lf~k 218 (929)
.+.|.-||-.++..
T Consensus 362 ~~~a~~~Lg~~y~~ 375 (490)
T 2xm6_A 362 EKAAQFNLGNALLQ 375 (490)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHc
Confidence 68888899877766
No 173
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=50.65 E-value=9.9 Score=40.06 Aligned_cols=62 Identities=13% Similarity=-0.002 Sum_probs=50.4
Q ss_pred HHHHhcchhhhhhhhcCCCCccccHHHHHHHHHHHHhcCCCCCCc------hhhhHHHHhccCCchhhHHHHHhhhcC
Q 002374 130 CLIYLGDLARYKGLYGEGDSKSREYAAASSYYLQAASLWPSSGNP------HHQLAILASYSSDELVAVYRYFRSLAV 201 (929)
Q Consensus 130 CLi~LGDLaRYr~~~~~~~~~~~~~~~A~~yY~~A~~l~P~~G~p------ynQLAvLa~~~~~~l~AvY~Y~RSL~~ 201 (929)
++..+|.+...+. +|..|+.+|.+|+.+.|..|.+ ++.+|.++...++.-.|+-+|-+++..
T Consensus 55 ~~~~l~~~~~~~g----------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~ 122 (373)
T 1hz4_A 55 ATSVLGEVLHCKG----------ELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQL 122 (373)
T ss_dssp HHHHHHHHHHHHT----------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC----------cHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 4556676655542 4578999999999999999988 577899999999999999999988864
No 174
>2aff_B MKI67 FHA domain interacting nucleolar phosphoPro; NIFK, , phosphoprotein, cell cycle; HET: SEP TPO; NMR {Homo sapiens}
Probab=50.06 E-value=4.3 Score=31.81 Aligned_cols=15 Identities=33% Similarity=0.776 Sum_probs=10.8
Q ss_pred CCCCCcceeEEeccC
Q 002374 590 MDGEEEDEVIVFKPA 604 (929)
Q Consensus 590 ~~~~~~~evi~fkp~ 604 (929)
|++|+||+-||||=.
T Consensus 27 mndDd~D~EIvfK~P 41 (44)
T 2aff_B 27 LNDDDKDDEIVFKQP 41 (44)
T ss_dssp CCGGGGSCSEEESSC
T ss_pred ccCCCccceEEeecC
Confidence 667766666999954
No 175
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=49.02 E-value=22 Score=39.69 Aligned_cols=68 Identities=12% Similarity=0.049 Sum_probs=55.4
Q ss_pred ccHHHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhcCCCCChhHHHHHHHHHHHH
Q 002374 152 REYAAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAVDSPFSTARDNLIVAFEKN 219 (929)
Q Consensus 152 ~~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~~Pf~~A~~NL~~lf~k~ 219 (929)
.+++.|..+|.+|+.+.|.....|+.||.++...++.-+|+-+|-+.+........+..+|..++.+.
T Consensus 387 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 454 (597)
T 2xpi_A 387 NKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQL 454 (597)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHc
Confidence 45788999999999999999999999999998888888888888888766555677777777666554
No 176
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=48.94 E-value=8.8 Score=32.36 Aligned_cols=21 Identities=19% Similarity=0.192 Sum_probs=18.0
Q ss_pred cHHHHHHHHHHHHhcCCCCCC
Q 002374 153 EYAAASSYYLQAASLWPSSGN 173 (929)
Q Consensus 153 ~~~~A~~yY~~A~~l~P~~G~ 173 (929)
+|..|..+|.+|+.+.|.++.
T Consensus 53 ~~~~A~~~~~~al~~~p~~~~ 73 (111)
T 2l6j_A 53 EYTQAIQMCQQGLRYTSTAEH 73 (111)
T ss_dssp CHHHHHHHHHHHHTSCSSTTS
T ss_pred CHHHHHHHHHHHHHhCCCccH
Confidence 457899999999999999943
No 177
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=48.59 E-value=7.8 Score=31.48 Aligned_cols=31 Identities=26% Similarity=0.438 Sum_probs=27.7
Q ss_pred cHHHHHHHHHHHHhcCCCCCCchhhhHHHHh
Q 002374 153 EYAAASSYYLQAASLWPSSGNPHHQLAILAS 183 (929)
Q Consensus 153 ~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~ 183 (929)
+|+.|..+|.+|+.+.|.....+..||.+..
T Consensus 58 ~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 58 DYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 5678999999999999999999999988765
No 178
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=44.02 E-value=19 Score=38.97 Aligned_cols=66 Identities=9% Similarity=-0.040 Sum_probs=55.4
Q ss_pred cHHHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhcCCCCChhHHHHHHHHHHH
Q 002374 153 EYAAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAVDSPFSTARDNLIVAFEK 218 (929)
Q Consensus 153 ~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~~Pf~~A~~NL~~lf~k 218 (929)
++..|..+|.+|+.+.|.....++.||.+....++.-.|+-+|-+++-..--...+..+|-.++..
T Consensus 228 ~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~ 293 (472)
T 4g1t_A 228 EEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRA 293 (472)
T ss_dssp --CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHH
Confidence 456899999999999999999999999999999999999999999987655567777777666544
No 179
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=42.67 E-value=53 Score=34.97 Aligned_cols=56 Identities=29% Similarity=0.488 Sum_probs=37.5
Q ss_pred HhcchhhhhhhhcCCCCccccHHHHHHHHHHHHhcCCCCCCchh--hhHHHHhccCCchhhHHHH
Q 002374 133 YLGDLARYKGLYGEGDSKSREYAAASSYYLQAASLWPSSGNPHH--QLAILASYSSDELVAVYRY 195 (929)
Q Consensus 133 ~LGDLaRYr~~~~~~~~~~~~~~~A~~yY~~A~~l~P~~G~pyn--QLAvLa~~~~~~l~AvY~Y 195 (929)
.-||..||...+...+.+..--+.|...|..|..+. ..=.|.| -||+.-.+ +||||
T Consensus 151 MKGDYyRYlaE~~~g~~r~~~~e~a~~aY~~A~~iA-~~L~pthPirLGLaLNf------SVFyY 208 (260)
T 2npm_A 151 MKGDYHRYISEFSTGDSKQSSAEDALKAYKDATVVA-KDLEPTHPIRLGLALNF------SVFHY 208 (260)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH-TTSCTTCHHHHHHHHHH------HHHHH
T ss_pred HhccHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHH-HhCCCCCcHHHHHHHHH------HHHHH
Confidence 389999999988654433222368999999999987 5434444 35555543 46666
No 180
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=41.98 E-value=18 Score=36.15 Aligned_cols=50 Identities=18% Similarity=0.221 Sum_probs=44.9
Q ss_pred ccHHHHHHHHHHHHhcCCCC---CCchhhhHHHHhccCCchhhHHHHHhhhcC
Q 002374 152 REYAAASSYYLQAASLWPSS---GNPHHQLAILASYSSDELVAVYRYFRSLAV 201 (929)
Q Consensus 152 ~~~~~A~~yY~~A~~l~P~~---G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~ 201 (929)
.+|..|..+|.+++...|.+ ...+..||.++...++.-.|+=+|-|.+-.
T Consensus 29 g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~ 81 (261)
T 3qky_A 29 GKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQI 81 (261)
T ss_dssp TCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 35788999999999999999 889999999999999999999999888764
No 181
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=41.74 E-value=15 Score=30.69 Aligned_cols=25 Identities=24% Similarity=0.303 Sum_probs=21.8
Q ss_pred cHHHHHHHHHHHHhcCCCCCCchhh
Q 002374 153 EYAAASSYYLQAASLWPSSGNPHHQ 177 (929)
Q Consensus 153 ~~~~A~~yY~~A~~l~P~~G~pynQ 177 (929)
+|..|..+|.+|+.+.|.....+++
T Consensus 50 ~~~~A~~~~~~al~~~p~~~~~~~~ 74 (99)
T 2kc7_A 50 DWQKALNNYQSAIELNPDSPALQAR 74 (99)
T ss_dssp CHHHHHHHHHHHHHHCTTSTHHHHH
T ss_pred CHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 4678999999999999999888754
No 182
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=41.48 E-value=38 Score=35.04 Aligned_cols=65 Identities=17% Similarity=-0.013 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHh-cCCCCCCchhhhHHHHhccCCchhhHHHHHhhhcCCCCChh-HHHHHHHHHHH
Q 002374 154 YAAASSYYLQAAS-LWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAVDSPFST-ARDNLIVAFEK 218 (929)
Q Consensus 154 ~~~A~~yY~~A~~-l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~~Pf~~-A~~NL~~lf~k 218 (929)
+..|+..|.+|+. +.|.+...|+.+|.+....++.=.|.-.|-|++...--.+. ++.++..+..+
T Consensus 80 ~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 146 (308)
T 2ond_A 80 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARR 146 (308)
T ss_dssp HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHH
Confidence 3679999999999 79999999999999998888888888889888874322333 67777665543
No 183
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=40.69 E-value=27 Score=36.10 Aligned_cols=52 Identities=15% Similarity=-0.061 Sum_probs=45.8
Q ss_pred ccHHHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhcCCCC
Q 002374 152 REYAAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAVDSP 204 (929)
Q Consensus 152 ~~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~~P 204 (929)
.+++.|...|.+|+.+.|.+..++..||.++...++.=+|+-+|-+.+.. .|
T Consensus 131 g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~-~p 182 (287)
T 3qou_A 131 SNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ-DQ 182 (287)
T ss_dssp TCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG-GC
T ss_pred CCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh-hc
Confidence 35789999999999999999999999999999999998999888877644 45
No 184
>3sf4_D Protein inscuteable homolog; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=39.42 E-value=9.9 Score=30.38 Aligned_cols=30 Identities=13% Similarity=0.279 Sum_probs=22.8
Q ss_pred hhhhhhh-hccccccCCCcCCCCCCcceeEE
Q 002374 571 ENQAEKA-MNLGVVQAPQLYMDGEEEDEVIV 600 (929)
Q Consensus 571 ~~~~~~~-~~~~~~~~~~~~~~~~~~~evi~ 600 (929)
+-..+|+ ++|+|||.||.-+|+|...|.|+
T Consensus 17 DLr~MTe~ECMcvLQ~Kpi~~eed~qgeli~ 47 (52)
T 3sf4_D 17 DLKLMTECECMCVLQAKPISLEEDAQGDLIL 47 (52)
T ss_dssp HHTTCCCCCCSEEEECCCCCCCGGGCCCEEE
T ss_pred HHHhhhhceEEEEeecCccCcccccccceee
Confidence 3345565 69999999998778877778775
No 185
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=39.42 E-value=96 Score=30.67 Aligned_cols=68 Identities=13% Similarity=0.017 Sum_probs=51.3
Q ss_pred cccHHHHHHHHHHHHhcCCCCCCch-----------------hhhHHHHhccCCchhhHHHHHhhhcCC--CC-ChhHHH
Q 002374 151 SREYAAASSYYLQAASLWPSSGNPH-----------------HQLAILASYSSDELVAVYRYFRSLAVD--SP-FSTARD 210 (929)
Q Consensus 151 ~~~~~~A~~yY~~A~~l~P~~G~py-----------------nQLAvLa~~~~~~l~AvY~Y~RSL~~~--~P-f~~A~~ 210 (929)
..+|..|..+|.+++.+.|.+.... ..+|.++...++.-.|+-+|-+.+-.. .| .+.+.-
T Consensus 110 ~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~ 189 (261)
T 3qky_A 110 QTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALV 189 (261)
T ss_dssp CHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHH
T ss_pred chhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHH
Confidence 3567899999999999999998887 788999988899999999888877432 12 234555
Q ss_pred HHHHHHHH
Q 002374 211 NLIVAFEK 218 (929)
Q Consensus 211 NL~~lf~k 218 (929)
+|-.++..
T Consensus 190 ~l~~~~~~ 197 (261)
T 3qky_A 190 GAMRAYIA 197 (261)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555544
No 186
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=39.18 E-value=1e+02 Score=32.92 Aligned_cols=35 Identities=20% Similarity=0.381 Sum_probs=25.9
Q ss_pred HhcchhhhhhhhcCCCCccccHHHHHHHHHHHHhc
Q 002374 133 YLGDLARYKGLYGEGDSKSREYAAASSYYLQAASL 167 (929)
Q Consensus 133 ~LGDLaRYr~~~~~~~~~~~~~~~A~~yY~~A~~l 167 (929)
.-||..||...+...+.+..--+.|...|..|..+
T Consensus 151 MKGDYyRYlAE~~~g~~rk~~~e~a~~aY~~A~~i 185 (261)
T 3ubw_A 151 MKGDYHRYLAEFATGNDRKEAAENSLVAYKAASDI 185 (261)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHH
Confidence 38999999988865543322236889999999865
No 187
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=37.72 E-value=21 Score=38.10 Aligned_cols=49 Identities=22% Similarity=0.157 Sum_probs=39.0
Q ss_pred ccHHHHHHHHHHHHhcCCCCCCc-------hhhhHHHHhccCCchhhHHHHHhhhc
Q 002374 152 REYAAASSYYLQAASLWPSSGNP-------HHQLAILASYSSDELVAVYRYFRSLA 200 (929)
Q Consensus 152 ~~~~~A~~yY~~A~~l~P~~G~p-------ynQLAvLa~~~~~~l~AvY~Y~RSL~ 200 (929)
.+|.+|+.+|.+|..+.+..+.+ +.++|.++...++...|.-||..++.
T Consensus 189 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 189 RNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp TCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 57889999999999998777665 55666777777888888888887764
No 188
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=33.76 E-value=1.3e+02 Score=31.90 Aligned_cols=36 Identities=19% Similarity=0.316 Sum_probs=26.7
Q ss_pred HhcchhhhhhhhcCCCCccccHHHHHHHHHHHHhcC
Q 002374 133 YLGDLARYKGLYGEGDSKSREYAAASSYYLQAASLW 168 (929)
Q Consensus 133 ~LGDLaRYr~~~~~~~~~~~~~~~A~~yY~~A~~l~ 168 (929)
.-||..||...+...+.+..--+.|...|..|..+.
T Consensus 130 MKGDYyRYlaE~~~g~~r~~~~e~a~~aY~~A~~iA 165 (260)
T 1o9d_A 130 MKGDYHRYLAEFKTGAERKEAAESTLTAYKAAQDIA 165 (260)
T ss_dssp HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHH
Confidence 389999999988765433222368999999998754
No 189
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=32.79 E-value=21 Score=37.54 Aligned_cols=63 Identities=14% Similarity=-0.156 Sum_probs=47.3
Q ss_pred HHHHHhcchhhhhhhhcCCCCccccHHHHHHHHHHHHhcCCCC--------CCchhhhHHHHhccCCchhhHHHHHhhhc
Q 002374 129 RCLIYLGDLARYKGLYGEGDSKSREYAAASSYYLQAASLWPSS--------GNPHHQLAILASYSSDELVAVYRYFRSLA 200 (929)
Q Consensus 129 rCLi~LGDLaRYr~~~~~~~~~~~~~~~A~~yY~~A~~l~P~~--------G~pynQLAvLa~~~~~~l~AvY~Y~RSL~ 200 (929)
.++..||.+...+ .+|..|..+|.+|+.+.+.. ...++.||.++...++.=.|.-+|-+++.
T Consensus 94 ~~~~~la~~~~~~----------G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 163 (373)
T 1hz4_A 94 WSLIQQSEILFAQ----------GFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIE 163 (373)
T ss_dssp HHHHHHHHHHHHT----------TCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHC----------CCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3455666664443 24678999999999988544 34567789998888999999999999885
Q ss_pred C
Q 002374 201 V 201 (929)
Q Consensus 201 ~ 201 (929)
.
T Consensus 164 ~ 164 (373)
T 1hz4_A 164 V 164 (373)
T ss_dssp H
T ss_pred H
Confidence 4
No 190
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=28.27 E-value=66 Score=33.18 Aligned_cols=50 Identities=8% Similarity=-0.052 Sum_probs=42.9
Q ss_pred ccHHHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhcC
Q 002374 152 REYAAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAV 201 (929)
Q Consensus 152 ~~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~ 201 (929)
.++..|+..|.+|+.+.|.....++.+|.+....++.=.|.-.|-|++..
T Consensus 183 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 232 (308)
T 2ond_A 183 KDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 232 (308)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 35678999999999999999999999998888888888888888888864
No 191
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=27.16 E-value=37 Score=39.04 Aligned_cols=48 Identities=10% Similarity=-0.171 Sum_probs=40.3
Q ss_pred ccHHHHHHHHHHHHhc--------CCCCCCchhhhHHHHhccCCchhhHHHHHhhh
Q 002374 152 REYAAASSYYLQAASL--------WPSSGNPHHQLAILASYSSDELVAVYRYFRSL 199 (929)
Q Consensus 152 ~~~~~A~~yY~~A~~l--------~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL 199 (929)
.+|+.|+..|.+|+.+ .|.....+|.||.++...++.=+|+-+|-|+|
T Consensus 323 g~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL 378 (490)
T 3n71_A 323 GLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMV 378 (490)
T ss_dssp TCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 3588999999999876 34556778999999999999999999988887
No 192
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=24.89 E-value=24 Score=39.94 Aligned_cols=48 Identities=8% Similarity=-0.239 Sum_probs=40.8
Q ss_pred cHHHHHHHHHHHHhc--------CCCCCCchhhhHHHHhccCCchhhHHHHHhhhc
Q 002374 153 EYAAASSYYLQAASL--------WPSSGNPHHQLAILASYSSDELVAVYRYFRSLA 200 (929)
Q Consensus 153 ~~~~A~~yY~~A~~l--------~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~ 200 (929)
+|+.|...|.+|+.+ .|.....+|.||.++...++.=+|+-||-|+|.
T Consensus 313 ~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~ 368 (433)
T 3qww_A 313 SPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIK 368 (433)
T ss_dssp CHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence 578999999999886 355577889999999999999999999988874
No 193
>3efz_A 14-3-3 protein; 14-3-3, cell regulation, structural genom structural genomics consortium, SGC; HET: SEP; 2.08A {Cryptosporidium parvum} SCOP: a.118.7.1 PDB: 2ijp_A*
Probab=23.55 E-value=1.7e+02 Score=31.30 Aligned_cols=36 Identities=28% Similarity=0.315 Sum_probs=26.5
Q ss_pred HhcchhhhhhhhcCCCCccccHHHHHHHHHHHHhcC
Q 002374 133 YLGDLARYKGLYGEGDSKSREYAAASSYYLQAASLW 168 (929)
Q Consensus 133 ~LGDLaRYr~~~~~~~~~~~~~~~A~~yY~~A~~l~ 168 (929)
.-||..||...+...+.+..--+.|...|..|..+.
T Consensus 147 MKGDYyRYlAE~~~g~erk~~~e~a~~aYq~A~eiA 182 (268)
T 3efz_A 147 LKGDLMRYKAEILKDEEKNQCIKQAVEFYEDALQRE 182 (268)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHH
Confidence 379999999887654433222378999999998765
No 194
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=22.94 E-value=51 Score=28.08 Aligned_cols=53 Identities=13% Similarity=0.016 Sum_probs=43.9
Q ss_pred CCCCCCchhhhHHHHhccCCchhhHHHHHhhhcCCCCChhHHHHHHHHHHHHH
Q 002374 168 WPSSGNPHHQLAILASYSSDELVAVYRYFRSLAVDSPFSTARDNLIVAFEKNR 220 (929)
Q Consensus 168 ~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~~Pf~~A~~NL~~lf~k~r 220 (929)
.|.+...+..||.++...++.=.|+-+|-+++...--+..+..+|-.++....
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g 55 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLD 55 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTT
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Confidence 58888899999999999999999999999999776668888888887776643
No 195
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=22.51 E-value=68 Score=31.35 Aligned_cols=49 Identities=12% Similarity=0.003 Sum_probs=40.5
Q ss_pred ccHHHHHHHHHHHHhcCCCCC---CchhhhHHHHhccCCchhhHHHHHhhhc
Q 002374 152 REYAAASSYYLQAASLWPSSG---NPHHQLAILASYSSDELVAVYRYFRSLA 200 (929)
Q Consensus 152 ~~~~~A~~yY~~A~~l~P~~G---~pynQLAvLa~~~~~~l~AvY~Y~RSL~ 200 (929)
.+|..|..+|.+++...|.+. ..+..||.+....++.-.|+-.|-+.+-
T Consensus 18 g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~ 69 (225)
T 2yhc_A 18 GNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIR 69 (225)
T ss_dssp TCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 467889999999999999875 4788899998888888888877777663
No 196
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=21.61 E-value=1.4e+02 Score=31.64 Aligned_cols=35 Identities=20% Similarity=0.349 Sum_probs=25.8
Q ss_pred HhcchhhhhhhhcCCCCccccHHHHHHHHHHHHhc
Q 002374 133 YLGDLARYKGLYGEGDSKSREYAAASSYYLQAASL 167 (929)
Q Consensus 133 ~LGDLaRYr~~~~~~~~~~~~~~~A~~yY~~A~~l 167 (929)
.-||..||...+...+.+..--..|...|..|..+
T Consensus 126 mKGDyyRYlAE~~~g~~r~~~~~~a~~aY~~A~~i 160 (248)
T 3uzd_A 126 MKGDYYRYLAEVATGEKRATVVESSEKAYSEAHEI 160 (248)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHhcCchHHHHHHHHHHHHHHHHHHH
Confidence 48999999988865443322236899999998765
Done!