Query 002375
Match_columns 929
No_of_seqs 1181 out of 4316
Neff 9.2
Searched_HMMs 46136
Date Thu Mar 28 22:37:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002375.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002375hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4626 O-linked N-acetylgluco 100.0 6E-43 1.3E-47 373.5 34.2 434 422-919 51-498 (966)
2 KOG4626 O-linked N-acetylgluco 100.0 1.3E-39 2.9E-44 348.0 31.3 382 415-890 112-503 (966)
3 TIGR02917 PEP_TPR_lipo putativ 100.0 3.6E-33 7.9E-38 352.1 60.0 490 398-926 379-886 (899)
4 TIGR02917 PEP_TPR_lipo putativ 100.0 2.2E-32 4.9E-37 344.9 61.0 493 414-923 120-681 (899)
5 PRK11447 cellulose synthase su 100.0 3.4E-31 7.3E-36 337.1 57.2 487 386-911 31-705 (1157)
6 PRK11447 cellulose synthase su 100.0 5.1E-30 1.1E-34 326.4 58.6 467 397-905 162-739 (1157)
7 TIGR00990 3a0801s09 mitochondr 100.0 1.1E-29 2.3E-34 304.4 52.0 417 418-913 126-578 (615)
8 PRK09782 bacteriophage N4 rece 100.0 7.7E-27 1.7E-31 283.9 56.4 503 396-925 58-725 (987)
9 TIGR00990 3a0801s09 mitochondr 100.0 1.2E-27 2.7E-32 286.5 46.1 391 489-926 133-557 (615)
10 KOG2002 TPR-containing nuclear 100.0 9.2E-27 2E-31 263.6 47.9 464 435-924 146-659 (1018)
11 KOG2002 TPR-containing nuclear 100.0 3.1E-27 6.8E-32 267.3 42.5 489 420-925 165-764 (1018)
12 PRK09782 bacteriophage N4 rece 100.0 5.7E-25 1.2E-29 267.6 51.9 499 418-926 43-692 (987)
13 PRK15174 Vi polysaccharide exp 100.0 3.2E-25 6.9E-30 264.8 42.1 328 519-910 46-385 (656)
14 PRK15174 Vi polysaccharide exp 100.0 6.3E-25 1.4E-29 262.3 43.6 316 498-878 59-386 (656)
15 KOG0547 Translocase of outer m 100.0 1.2E-24 2.6E-29 229.1 39.0 425 416-919 112-579 (606)
16 PRK10049 pgaA outer membrane p 99.9 2E-24 4.4E-29 263.4 43.0 389 496-921 30-471 (765)
17 PRK10049 pgaA outer membrane p 99.9 8.1E-23 1.8E-27 249.3 45.5 393 503-923 4-439 (765)
18 PHA02790 Kelch-like protein; P 99.9 1.7E-26 3.6E-31 265.9 12.4 146 214-363 18-166 (480)
19 PHA02713 hypothetical protein; 99.9 1.2E-25 2.7E-30 262.2 15.4 152 206-363 13-167 (557)
20 KOG4441 Proteins containing BT 99.9 8.3E-26 1.8E-30 262.0 12.9 155 205-363 23-178 (571)
21 KOG0547 Translocase of outer m 99.9 2E-22 4.3E-27 212.4 33.2 391 489-926 121-552 (606)
22 KOG0548 Molecular co-chaperone 99.9 1.4E-21 3.1E-26 209.8 38.8 426 422-923 5-472 (539)
23 KOG4350 Uncharacterized conser 99.9 1.4E-24 3E-29 221.8 12.4 159 213-376 40-200 (620)
24 PHA03098 kelch-like protein; P 99.9 7.6E-24 1.6E-28 249.9 15.6 140 216-363 8-149 (534)
25 KOG1155 Anaphase-promoting com 99.9 7.4E-20 1.6E-24 192.2 42.2 373 513-925 162-555 (559)
26 KOG0624 dsRNA-activated protei 99.9 3.4E-21 7.3E-26 194.5 29.0 210 489-707 44-256 (504)
27 PRK14574 hmsH outer membrane p 99.9 1.5E-19 3.3E-24 216.2 48.5 433 419-917 34-524 (822)
28 KOG1126 DNA-binding cell divis 99.9 9.8E-22 2.1E-26 216.1 26.9 300 517-912 319-626 (638)
29 KOG1155 Anaphase-promoting com 99.9 7.4E-20 1.6E-24 192.2 38.8 370 419-880 164-543 (559)
30 KOG2003 TPR repeat-containing 99.9 2.7E-20 5.8E-25 193.6 35.1 269 641-920 420-703 (840)
31 KOG1173 Anaphase-promoting com 99.9 4.4E-20 9.5E-25 198.8 35.2 393 418-923 140-535 (611)
32 KOG1126 DNA-binding cell divis 99.9 6.7E-21 1.5E-25 209.6 26.3 286 499-878 337-625 (638)
33 PRK11788 tetratricopeptide rep 99.9 1.1E-19 2.4E-24 206.6 36.6 304 516-910 36-355 (389)
34 PRK14574 hmsH outer membrane p 99.9 1.3E-18 2.8E-23 208.2 45.3 416 482-922 33-495 (822)
35 KOG0495 HAT repeat protein [RN 99.9 1.6E-16 3.5E-21 173.0 55.1 486 390-919 385-893 (913)
36 KOG0495 HAT repeat protein [RN 99.9 1.9E-17 4.1E-22 180.1 47.2 413 497-925 392-865 (913)
37 PRK11788 tetratricopeptide rep 99.9 2.6E-19 5.7E-24 203.5 34.0 275 589-921 36-326 (389)
38 KOG2076 RNA polymerase III tra 99.9 1.9E-17 4.1E-22 187.7 48.0 485 420-909 140-852 (895)
39 KOG1174 Anaphase-promoting com 99.9 1.5E-17 3.2E-22 172.3 40.7 376 515-925 130-519 (564)
40 KOG0624 dsRNA-activated protei 99.8 3.1E-18 6.7E-23 173.2 32.3 359 417-877 36-426 (504)
41 KOG4162 Predicted calmodulin-b 99.8 4.1E-17 9E-22 181.9 40.5 424 418-912 322-789 (799)
42 PLN03077 Protein ECB2; Provisi 99.8 6.8E-17 1.5E-21 201.6 45.2 452 425-921 228-701 (857)
43 KOG0548 Molecular co-chaperone 99.8 1.4E-17 3.1E-22 179.3 30.2 382 490-923 9-438 (539)
44 PLN03081 pentatricopeptide (PP 99.8 3.4E-16 7.3E-21 190.7 46.5 442 422-906 90-557 (697)
45 PLN03077 Protein ECB2; Provisi 99.8 1.8E-15 3.8E-20 189.0 46.2 443 421-905 255-719 (857)
46 TIGR00540 hemY_coli hemY prote 99.8 2.4E-16 5.1E-21 179.1 34.9 228 642-906 155-399 (409)
47 KOG2076 RNA polymerase III tra 99.8 2.2E-16 4.9E-21 179.1 34.0 329 517-907 141-513 (895)
48 PLN03081 pentatricopeptide (PP 99.8 1.2E-15 2.6E-20 185.9 42.2 382 499-922 141-539 (697)
49 KOG1127 TPR repeat-containing 99.8 2.8E-16 6E-21 178.5 33.3 452 424-905 404-912 (1238)
50 KOG2003 TPR repeat-containing 99.8 7.5E-16 1.6E-20 160.8 31.0 399 417-891 274-708 (840)
51 PLN03218 maturation of RBCL 1; 99.8 3.2E-14 6.8E-19 175.4 50.8 348 422-807 373-746 (1060)
52 KOG1173 Anaphase-promoting com 99.8 2.8E-16 6E-21 169.8 27.7 267 513-843 242-522 (611)
53 KOG1127 TPR repeat-containing 99.8 8.5E-15 1.8E-19 166.6 39.4 441 432-925 471-981 (1238)
54 PRK10747 putative protoheme IX 99.8 3.7E-15 8.1E-20 168.4 37.1 229 645-907 158-391 (398)
55 PF13429 TPR_15: Tetratricopep 99.7 6.8E-18 1.5E-22 182.2 13.6 252 643-906 11-277 (280)
56 KOG4162 Predicted calmodulin-b 99.7 9.1E-15 2E-19 163.5 37.7 261 626-927 464-770 (799)
57 PRK12370 invasion protein regu 99.7 4.2E-16 9.1E-21 183.6 28.7 245 498-809 278-535 (553)
58 PLN03218 maturation of RBCL 1; 99.7 5.2E-14 1.1E-18 173.5 47.9 368 499-910 424-820 (1060)
59 PRK12370 invasion protein regu 99.7 1E-15 2.2E-20 180.5 30.2 271 551-909 261-538 (553)
60 KOG4591 Uncharacterized conser 99.7 6.9E-18 1.5E-22 157.0 9.0 141 214-361 63-207 (280)
61 PRK11189 lipoprotein NlpI; Pro 99.7 5.7E-16 1.2E-20 167.6 24.8 144 626-809 46-194 (296)
62 PRK11189 lipoprotein NlpI; Pro 99.7 1.2E-15 2.5E-20 165.2 26.9 228 654-924 40-284 (296)
63 KOG2075 Topoisomerase TOP1-int 99.7 8.5E-17 1.8E-21 170.2 15.2 143 219-365 116-264 (521)
64 KOG1174 Anaphase-promoting com 99.7 1.1E-13 2.4E-18 143.9 35.1 359 426-818 137-509 (564)
65 KOG1129 TPR repeat-containing 99.7 3.9E-16 8.5E-21 157.2 16.7 203 552-819 227-434 (478)
66 KOG0550 Molecular chaperone (D 99.7 7E-16 1.5E-20 160.6 18.1 181 637-876 166-353 (486)
67 TIGR00540 hemY_coli hemY prote 99.7 8.3E-14 1.8E-18 158.3 36.1 302 418-809 83-399 (409)
68 COG3063 PilF Tfp pilus assembl 99.7 7E-15 1.5E-19 142.8 23.0 206 640-915 35-245 (250)
69 KOG1129 TPR repeat-containing 99.7 9.5E-16 2.1E-20 154.5 17.1 242 519-821 227-470 (478)
70 PF13429 TPR_15: Tetratricopep 99.7 1.7E-16 3.7E-21 171.2 12.5 265 510-872 5-276 (280)
71 KOG1125 TPR repeat-containing 99.7 1.2E-15 2.7E-20 165.8 18.3 244 644-898 289-563 (579)
72 TIGR02521 type_IV_pilW type IV 99.7 1.8E-14 3.9E-19 150.3 25.9 201 638-908 29-234 (234)
73 PRK10747 putative protoheme IX 99.7 1.6E-13 3.5E-18 155.1 35.3 295 518-874 87-391 (398)
74 PF00651 BTB: BTB/POZ domain; 99.7 1.8E-16 4E-21 145.1 8.3 100 215-317 8-110 (111)
75 KOG1915 Cell cycle control pro 99.7 1.1E-11 2.4E-16 131.2 44.0 445 420-922 74-551 (677)
76 KOG1125 TPR repeat-containing 99.6 1.7E-14 3.8E-19 157.0 23.6 254 487-798 289-560 (579)
77 KOG0550 Molecular chaperone (D 99.6 1.3E-13 2.8E-18 143.9 28.4 375 412-903 42-440 (486)
78 KOG1156 N-terminal acetyltrans 99.6 6.3E-13 1.4E-17 146.2 33.6 369 515-914 7-442 (700)
79 TIGR02521 type_IV_pilW type IV 99.6 8.1E-14 1.8E-18 145.4 25.7 186 673-926 30-218 (234)
80 KOG1156 N-terminal acetyltrans 99.6 8.2E-12 1.8E-16 137.6 41.6 428 419-904 7-466 (700)
81 smart00225 BTB Broad-Complex, 99.6 2.8E-15 6.2E-20 131.2 9.6 89 220-311 2-90 (90)
82 PLN02789 farnesyltranstransfer 99.6 1.9E-13 4.2E-18 147.4 25.7 241 638-918 35-314 (320)
83 COG3063 PilF Tfp pilus assembl 99.6 2.6E-13 5.6E-18 132.0 23.5 203 549-815 36-242 (250)
84 COG2956 Predicted N-acetylgluc 99.6 4.5E-12 9.8E-17 128.6 33.4 259 496-817 50-319 (389)
85 cd05804 StaR_like StaR_like; a 99.6 9.1E-13 2E-17 147.8 31.9 314 511-907 2-337 (355)
86 KOG1840 Kinesin light chain [C 99.6 5.2E-13 1.1E-17 150.0 28.9 258 509-872 193-478 (508)
87 KOG0783 Uncharacterized conser 99.6 1.5E-15 3.2E-20 168.6 6.6 133 225-360 719-856 (1267)
88 KOG4682 Uncharacterized conser 99.6 8.1E-15 1.8E-19 151.4 11.4 146 212-360 64-211 (488)
89 KOG1840 Kinesin light chain [C 99.6 4E-12 8.8E-17 142.9 32.6 236 636-905 195-478 (508)
90 COG2956 Predicted N-acetylgluc 99.6 2.7E-12 5.8E-17 130.3 27.3 244 644-923 39-295 (389)
91 KOG2376 Signal recognition par 99.6 2.2E-10 4.8E-15 125.2 43.0 428 425-917 18-498 (652)
92 PLN02789 farnesyltranstransfer 99.5 1E-12 2.2E-17 141.8 25.1 209 523-792 45-267 (320)
93 KOG1915 Cell cycle control pro 99.5 4.7E-10 1E-14 119.1 38.9 399 485-912 75-506 (677)
94 KOG3785 Uncharacterized conser 99.4 3.5E-10 7.6E-15 115.8 31.3 268 496-796 37-332 (557)
95 COG3071 HemY Uncharacterized e 99.4 5.7E-10 1.2E-14 117.3 33.5 290 559-906 95-390 (400)
96 KOG3785 Uncharacterized conser 99.4 1.4E-09 3.1E-14 111.4 34.8 433 399-909 39-493 (557)
97 TIGR03302 OM_YfiO outer membra 99.4 1.6E-11 3.5E-16 128.9 20.3 201 634-909 27-235 (235)
98 cd05804 StaR_like StaR_like; a 99.4 2.9E-10 6.4E-15 127.4 29.4 285 499-810 24-337 (355)
99 TIGR03302 OM_YfiO outer membra 99.4 4.2E-11 9E-16 125.8 20.8 175 510-705 28-234 (235)
100 KOG2376 Signal recognition par 99.4 2.5E-09 5.5E-14 117.1 34.1 353 497-905 28-445 (652)
101 PRK15359 type III secretion sy 99.4 1.3E-11 2.8E-16 118.1 14.3 121 801-924 14-139 (144)
102 PF12569 NARP1: NMDA receptor- 99.3 7.9E-10 1.7E-14 126.2 30.5 268 639-906 3-334 (517)
103 KOG1130 Predicted G-alpha GTPa 99.3 3.9E-11 8.5E-16 124.9 17.7 281 522-906 24-344 (639)
104 KOG2047 mRNA splicing factor [ 99.3 6.3E-08 1.4E-12 106.9 42.5 414 501-923 88-598 (835)
105 PRK14720 transcript cleavage f 99.3 1.7E-09 3.6E-14 128.6 29.6 154 508-703 24-178 (906)
106 PF12569 NARP1: NMDA receptor- 99.3 2.4E-08 5.1E-13 114.2 37.8 126 641-777 195-334 (517)
107 PRK10370 formate-dependent nit 99.3 2.3E-10 4.9E-15 115.6 18.6 160 754-922 22-189 (198)
108 KOG2047 mRNA splicing factor [ 99.3 7.3E-07 1.6E-11 98.7 45.7 434 417-860 246-710 (835)
109 PRK04841 transcriptional regul 99.3 1.6E-08 3.5E-13 128.2 38.6 366 518-911 344-765 (903)
110 PRK15359 type III secretion sy 99.2 1.4E-10 3E-15 110.9 15.1 55 630-684 82-136 (144)
111 KOG0553 TPR repeat-containing 99.2 6.2E-11 1.3E-15 120.5 12.4 107 822-928 93-200 (304)
112 KOG1130 Predicted G-alpha GTPa 99.2 8.6E-11 1.9E-15 122.4 13.5 265 423-811 21-306 (639)
113 KOG3060 Uncharacterized conser 99.2 2.7E-09 5.9E-14 105.5 21.1 169 749-917 53-231 (289)
114 COG3071 HemY Uncharacterized e 99.2 1.1E-07 2.3E-12 100.5 33.4 303 418-809 83-390 (400)
115 PRK10370 formate-dependent nit 99.2 6.7E-10 1.4E-14 112.2 16.6 115 626-780 59-176 (198)
116 PRK14720 transcript cleavage f 99.2 1.9E-09 4.2E-14 128.1 22.9 222 634-889 25-269 (906)
117 KOG4340 Uncharacterized conser 99.2 1.8E-08 3.9E-13 101.3 25.3 272 498-813 27-309 (459)
118 KOG1128 Uncharacterized conser 99.2 8.3E-10 1.8E-14 123.7 17.6 221 512-810 395-617 (777)
119 PRK15179 Vi polysaccharide bio 99.2 3.2E-09 6.9E-14 125.8 23.5 141 573-777 77-217 (694)
120 COG5010 TadD Flp pilus assembl 99.2 3.7E-09 8E-14 105.9 20.0 177 565-806 50-228 (257)
121 KOG4340 Uncharacterized conser 99.1 5.9E-08 1.3E-12 97.7 28.1 385 430-881 21-451 (459)
122 TIGR02552 LcrH_SycD type III s 99.1 7.2E-10 1.6E-14 105.3 13.8 122 802-923 5-131 (135)
123 PRK15179 Vi polysaccharide bio 99.1 5E-09 1.1E-13 124.1 23.9 150 630-819 76-227 (694)
124 PRK04841 transcriptional regul 99.1 1.3E-07 2.8E-12 119.9 37.9 381 418-877 340-764 (903)
125 COG5010 TadD Flp pilus assembl 99.1 5.3E-09 1.2E-13 104.7 18.9 178 499-701 51-229 (257)
126 KOG3060 Uncharacterized conser 99.1 2.2E-08 4.7E-13 99.2 21.7 181 510-714 47-232 (289)
127 KOG1128 Uncharacterized conser 99.1 3.4E-09 7.3E-14 118.9 18.1 216 637-873 395-616 (777)
128 TIGR02552 LcrH_SycD type III s 99.0 5E-09 1.1E-13 99.5 14.1 115 569-707 4-118 (135)
129 KOG0553 TPR repeat-containing 99.0 4.5E-09 9.8E-14 107.1 12.4 108 785-892 86-198 (304)
130 PF04733 Coatomer_E: Coatomer 99.0 1.1E-08 2.3E-13 109.4 15.6 258 649-919 10-278 (290)
131 COG4783 Putative Zn-dependent 99.0 1.9E-07 4.2E-12 101.2 25.0 147 589-777 307-454 (484)
132 PRK15363 pathogenicity island 98.9 1.3E-08 2.8E-13 95.6 13.2 90 823-912 48-138 (157)
133 PRK15363 pathogenicity island 98.9 4.2E-08 9.1E-13 92.1 14.0 98 781-878 36-137 (157)
134 PLN03088 SGT1, suppressor of 98.9 1.9E-08 4.1E-13 111.5 13.7 103 823-925 15-118 (356)
135 COG4783 Putative Zn-dependent 98.9 2.4E-07 5.2E-12 100.4 21.0 145 778-922 304-453 (484)
136 PF04733 Coatomer_E: Coatomer 98.8 9.5E-08 2E-12 102.2 16.9 138 640-817 131-273 (290)
137 KOG1941 Acetylcholine receptor 98.8 2E-06 4.3E-11 89.2 24.0 243 517-809 8-275 (518)
138 TIGR02795 tol_pal_ybgF tol-pal 98.8 1.2E-07 2.6E-12 87.5 14.0 112 781-919 3-118 (119)
139 PF13525 YfiO: Outer membrane 98.8 6E-07 1.3E-11 91.4 19.6 177 418-694 4-198 (203)
140 PRK10866 outer membrane biogen 98.7 1.5E-06 3.3E-11 90.7 21.9 202 638-903 30-238 (243)
141 PF13414 TPR_11: TPR repeat; P 98.7 4.6E-08 1E-12 80.6 8.2 67 639-705 2-69 (69)
142 COG4785 NlpI Lipoprotein NlpI, 98.7 2.8E-07 6.1E-12 88.9 14.6 197 638-875 63-268 (297)
143 COG4785 NlpI Lipoprotein NlpI, 98.7 7E-07 1.5E-11 86.3 17.0 195 550-777 67-266 (297)
144 KOG0511 Ankyrin repeat protein 98.7 4.2E-08 9.2E-13 101.2 9.3 144 220-366 295-445 (516)
145 PF13414 TPR_11: TPR repeat; P 98.7 5.8E-08 1.3E-12 80.0 7.5 66 843-908 2-69 (69)
146 PLN03088 SGT1, suppressor of 98.7 2.8E-07 6.1E-12 102.2 14.7 108 783-890 5-117 (356)
147 PF13525 YfiO: Outer membrane 98.7 2.1E-06 4.6E-11 87.4 20.0 188 639-897 4-198 (203)
148 PRK10866 outer membrane biogen 98.7 2.7E-06 5.9E-11 88.7 21.0 161 499-700 50-238 (243)
149 KOG1941 Acetylcholine receptor 98.6 3.8E-05 8.3E-10 79.9 27.4 275 423-809 10-320 (518)
150 PF14938 SNAP: Soluble NSF att 98.6 3.6E-06 7.9E-11 90.5 19.7 174 680-912 41-231 (282)
151 KOG0543 FKBP-type peptidyl-pro 98.6 6.6E-07 1.4E-11 95.4 13.0 128 785-927 213-341 (397)
152 PRK10153 DNA-binding transcrip 98.6 1.4E-06 3.1E-11 100.5 16.8 86 827-912 401-488 (517)
153 PF13432 TPR_16: Tetratricopep 98.5 3.1E-07 6.8E-12 74.6 7.8 64 644-707 1-64 (65)
154 KOG4234 TPR repeat-containing 98.5 9.3E-07 2E-11 84.4 11.9 118 783-925 98-216 (271)
155 CHL00033 ycf3 photosystem I as 98.5 2.1E-06 4.6E-11 84.7 15.0 77 640-716 35-115 (168)
156 PRK02603 photosystem I assembl 98.5 2.7E-06 5.8E-11 84.4 15.7 70 638-707 33-105 (172)
157 PF13432 TPR_16: Tetratricopep 98.5 3.5E-07 7.5E-12 74.3 7.7 64 848-911 1-65 (65)
158 TIGR02795 tol_pal_ybgF tol-pal 98.5 1.6E-06 3.4E-11 80.0 13.1 105 548-707 2-109 (119)
159 PRK10803 tol-pal system protei 98.5 2E-06 4.4E-11 90.3 15.4 115 781-922 143-262 (263)
160 PRK10153 DNA-binding transcrip 98.5 3.7E-06 8E-11 97.2 18.6 144 551-711 342-490 (517)
161 COG4235 Cytochrome c biogenesi 98.5 2.8E-06 6E-11 87.8 15.6 122 798-919 140-269 (287)
162 KOG4648 Uncharacterized conser 98.5 1E-07 2.2E-12 97.7 4.9 232 643-922 100-346 (536)
163 PF14938 SNAP: Soluble NSF att 98.5 3.1E-06 6.8E-11 91.0 16.6 211 641-909 36-269 (282)
164 PRK11906 transcriptional regul 98.5 4E-06 8.6E-11 91.8 17.0 155 499-701 276-434 (458)
165 PRK02603 photosystem I assembl 98.5 2.8E-06 6.1E-11 84.2 14.6 115 671-814 32-154 (172)
166 KOG1070 rRNA processing protei 98.5 4.5E-05 9.7E-10 91.8 26.0 215 659-877 1443-1667(1710)
167 KOG2471 TPR repeat-containing 98.5 8.9E-05 1.9E-09 80.1 25.8 361 499-904 224-682 (696)
168 COG4235 Cytochrome c biogenesi 98.5 3.3E-06 7.2E-11 87.2 14.8 120 564-707 138-260 (287)
169 PF09976 TPR_21: Tetratricopep 98.4 9.7E-06 2.1E-10 77.8 16.7 124 647-807 18-145 (145)
170 cd00189 TPR Tetratricopeptide 98.4 2.1E-06 4.6E-11 74.5 11.2 99 590-706 2-100 (100)
171 PF09976 TPR_21: Tetratricopep 98.4 6.2E-06 1.4E-10 79.1 15.2 80 824-904 62-145 (145)
172 COG0457 NrfG FOG: TPR repeat [ 98.4 0.00029 6.3E-09 72.3 29.1 217 653-909 36-268 (291)
173 KOG2300 Uncharacterized conser 98.4 0.0051 1.1E-07 67.0 37.8 376 516-913 8-480 (629)
174 cd00189 TPR Tetratricopeptide 98.4 2.5E-06 5.3E-11 74.1 10.9 77 833-909 23-100 (100)
175 KOG3081 Vesicle coat complex C 98.4 7.4E-05 1.6E-09 75.2 22.1 259 649-919 17-284 (299)
176 PF12895 Apc3: Anaphase-promot 98.4 5.7E-07 1.2E-11 77.3 6.3 80 823-903 2-84 (84)
177 PF12895 Apc3: Anaphase-promot 98.4 1.6E-06 3.5E-11 74.5 9.1 81 653-774 2-84 (84)
178 CHL00033 ycf3 photosystem I as 98.4 4.6E-06 1E-10 82.4 13.0 125 528-707 12-153 (168)
179 PF13512 TPR_18: Tetratricopep 98.3 1E-05 2.2E-10 74.9 13.6 114 779-919 9-141 (142)
180 PF13371 TPR_9: Tetratricopept 98.3 2E-06 4.3E-11 71.7 7.9 70 851-920 2-72 (73)
181 PRK11906 transcriptional regul 98.3 1.6E-05 3.4E-10 87.2 16.6 155 751-905 258-435 (458)
182 KOG0543 FKBP-type peptidyl-pro 98.3 5.8E-06 1.2E-10 88.4 12.8 144 518-703 211-355 (397)
183 KOG3617 WD40 and TPR repeat-co 98.3 0.00048 1E-08 78.8 28.3 66 838-903 1073-1171(1416)
184 COG3898 Uncharacterized membra 98.3 0.0012 2.6E-08 69.9 29.3 72 835-906 320-392 (531)
185 COG0457 NrfG FOG: TPR repeat [ 98.3 0.00089 1.9E-08 68.6 29.2 61 751-811 205-267 (291)
186 COG4700 Uncharacterized protei 98.3 7.6E-05 1.6E-09 70.8 18.3 144 749-920 90-241 (251)
187 KOG1070 rRNA processing protei 98.3 0.00027 5.8E-09 85.4 27.2 214 499-777 1442-1663(1710)
188 KOG4648 Uncharacterized conser 98.3 6.6E-07 1.4E-11 91.9 4.4 194 677-914 100-304 (536)
189 PF14559 TPR_19: Tetratricopep 98.3 2.4E-06 5.2E-11 70.0 7.0 66 855-920 2-68 (68)
190 PRK10803 tol-pal system protei 98.3 1.9E-05 4E-10 83.1 15.2 67 516-582 143-214 (263)
191 PRK15331 chaperone protein Sic 98.3 1.4E-05 3.1E-10 75.6 12.6 105 782-887 39-147 (165)
192 KOG2053 Mitochondrial inherita 98.3 0.023 5E-07 66.7 40.8 407 496-909 24-539 (932)
193 KOG2838 Uncharacterized conser 98.3 8.3E-07 1.8E-11 87.8 4.4 56 228-284 262-327 (401)
194 KOG3616 Selective LIM binding 98.2 0.0017 3.7E-08 73.3 30.4 223 641-881 766-1032(1636)
195 KOG3617 WD40 and TPR repeat-co 98.2 0.00041 8.9E-09 79.3 25.7 36 633-668 960-995 (1416)
196 KOG0783 Uncharacterized conser 98.2 1.5E-06 3.2E-11 98.4 6.2 68 215-284 556-635 (1267)
197 PRK15331 chaperone protein Sic 98.2 1.9E-05 4.1E-10 74.7 12.3 107 631-777 28-134 (165)
198 KOG3616 Selective LIM binding 98.2 0.0039 8.5E-08 70.5 31.8 51 524-574 741-791 (1636)
199 COG1729 Uncharacterized protei 98.2 3.5E-05 7.6E-10 78.8 14.4 113 783-922 144-260 (262)
200 KOG1914 mRNA cleavage and poly 98.2 0.023 5.1E-07 63.0 39.6 378 505-906 10-464 (656)
201 PF12688 TPR_5: Tetratrico pep 98.1 4.5E-05 9.7E-10 69.6 12.9 100 548-702 1-103 (120)
202 KOG4234 TPR repeat-containing 98.1 6.8E-05 1.5E-09 72.0 14.4 107 417-546 93-199 (271)
203 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 4E-05 8.6E-10 84.8 14.7 114 561-701 182-295 (395)
204 PF12688 TPR_5: Tetratrico pep 98.1 6E-05 1.3E-09 68.7 13.4 67 641-707 2-71 (120)
205 COG4105 ComL DNA uptake lipopr 98.1 0.00034 7.4E-09 71.0 19.9 176 639-814 33-238 (254)
206 KOG3081 Vesicle coat complex C 98.1 0.0014 3E-08 66.3 23.7 123 757-879 146-277 (299)
207 PF14559 TPR_19: Tetratricopep 98.1 1.1E-05 2.4E-10 66.0 7.5 57 651-707 2-58 (68)
208 COG4105 ComL DNA uptake lipopr 98.1 0.00043 9.3E-09 70.3 20.1 179 514-707 33-237 (254)
209 KOG4555 TPR repeat-containing 98.1 3.2E-05 6.9E-10 68.9 10.1 90 822-911 55-149 (175)
210 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 6.2E-05 1.3E-09 83.3 14.9 116 754-870 175-294 (395)
211 KOG2053 Mitochondrial inherita 98.1 0.0053 1.2E-07 71.8 30.7 229 559-813 20-259 (932)
212 KOG2300 Uncharacterized conser 98.1 0.019 4.1E-07 62.8 32.5 161 724-907 336-515 (629)
213 PF13512 TPR_18: Tetratricopep 98.1 0.00011 2.3E-09 68.2 13.8 84 514-600 9-96 (142)
214 COG3898 Uncharacterized membra 98.1 0.008 1.7E-07 63.9 28.9 186 499-707 102-296 (531)
215 KOG2716 Polymerase delta-inter 98.1 2.3E-05 5.1E-10 78.5 10.1 97 220-319 7-106 (230)
216 PF13371 TPR_9: Tetratricopept 98.0 2E-05 4.3E-10 65.6 7.9 61 647-707 2-62 (73)
217 PLN03098 LPA1 LOW PSII ACCUMUL 98.0 2.5E-05 5.5E-10 85.5 9.4 69 635-703 70-141 (453)
218 PLN03098 LPA1 LOW PSII ACCUMUL 98.0 2.5E-05 5.5E-10 85.6 9.1 68 839-906 70-141 (453)
219 KOG1987 Speckle-type POZ prote 98.0 6.2E-06 1.4E-10 89.7 4.4 130 226-359 109-243 (297)
220 COG4700 Uncharacterized protei 97.9 0.00085 1.8E-08 63.9 17.6 145 532-701 73-220 (251)
221 PF10345 Cohesin_load: Cohesin 97.9 0.033 7.1E-07 66.9 35.7 440 402-905 41-605 (608)
222 COG1729 Uncharacterized protei 97.9 0.00021 4.5E-09 73.3 14.2 104 518-676 144-251 (262)
223 PF13424 TPR_12: Tetratricopep 97.8 6E-05 1.3E-09 63.6 7.5 73 671-777 2-75 (78)
224 KOG4555 TPR repeat-containing 97.8 0.00053 1.2E-08 61.2 12.9 106 643-784 46-151 (175)
225 PF13424 TPR_12: Tetratricopep 97.8 3.5E-05 7.6E-10 65.1 5.2 68 637-704 2-76 (78)
226 PF02214 BTB_2: BTB/POZ domain 97.8 3.4E-05 7.4E-10 67.8 4.9 88 220-310 1-94 (94)
227 KOG3473 RNA polymerase II tran 97.8 0.00012 2.6E-09 60.8 7.6 81 220-303 19-112 (112)
228 KOG1585 Protein required for f 97.7 0.0036 7.8E-08 62.4 18.7 198 555-805 38-252 (308)
229 KOG2796 Uncharacterized conser 97.7 0.013 2.9E-07 59.0 22.8 219 640-877 69-319 (366)
230 KOG1586 Protein required for f 97.7 0.0012 2.5E-08 65.3 14.9 164 751-915 37-233 (288)
231 PF06552 TOM20_plant: Plant sp 97.7 0.00024 5.3E-09 67.9 9.5 84 796-879 7-115 (186)
232 KOG0376 Serine-threonine phosp 97.5 0.00016 3.5E-09 79.0 6.5 100 824-923 18-118 (476)
233 PF04184 ST7: ST7 protein; In 97.5 0.0092 2E-07 65.9 19.7 251 636-919 164-427 (539)
234 PF06552 TOM20_plant: Plant sp 97.5 0.00039 8.5E-09 66.5 8.1 103 656-788 7-120 (186)
235 KOG4507 Uncharacterized conser 97.5 0.074 1.6E-06 59.5 25.9 104 822-925 619-724 (886)
236 PF13281 DUF4071: Domain of un 97.4 0.013 2.9E-07 63.9 19.7 171 748-919 141-347 (374)
237 PF13431 TPR_17: Tetratricopep 97.4 0.00014 3E-09 50.0 2.9 33 503-535 1-33 (34)
238 KOG2471 TPR repeat-containing 97.4 0.0028 6.1E-08 68.9 13.9 248 514-821 99-376 (696)
239 KOG1586 Protein required for f 97.4 0.11 2.5E-06 51.7 23.6 179 641-877 35-228 (288)
240 KOG2796 Uncharacterized conser 97.4 0.01 2.2E-07 59.9 16.4 138 552-707 181-319 (366)
241 KOG1585 Protein required for f 97.4 0.01 2.2E-07 59.3 16.3 163 640-807 31-217 (308)
242 PF13428 TPR_14: Tetratricopep 97.3 0.00044 9.4E-09 50.9 5.2 42 641-682 2-43 (44)
243 PF10345 Cohesin_load: Cohesin 97.3 0.47 1E-05 57.1 34.0 84 496-580 36-131 (608)
244 PF13428 TPR_14: Tetratricopep 97.3 0.00046 9.9E-09 50.8 5.1 40 880-919 4-43 (44)
245 KOG0545 Aryl-hydrocarbon recep 97.3 0.0023 5E-08 63.7 11.3 120 419-582 178-298 (329)
246 PF07079 DUF1347: Protein of u 97.3 0.45 9.8E-06 52.2 41.8 53 851-903 469-521 (549)
247 KOG0985 Vesicle coat protein c 97.3 0.46 1E-05 56.7 30.5 230 637-902 1101-1337(1666)
248 KOG4642 Chaperone-dependent E3 97.2 0.0016 3.5E-08 64.7 9.1 82 825-906 25-107 (284)
249 PF13431 TPR_17: Tetratricopep 97.2 0.00027 5.9E-09 48.5 2.7 32 833-864 2-33 (34)
250 COG2976 Uncharacterized protei 97.2 0.027 5.9E-07 54.7 16.9 65 848-912 130-194 (207)
251 PF10300 DUF3808: Protein of u 97.2 0.1 2.2E-06 60.3 25.0 154 754-907 194-377 (468)
252 PF05843 Suf: Suppressor of fo 97.2 0.0035 7.6E-08 67.2 12.2 139 750-918 3-148 (280)
253 KOG2610 Uncharacterized conser 97.1 0.027 5.9E-07 58.8 17.3 158 754-911 109-283 (491)
254 PF00515 TPR_1: Tetratricopept 97.1 0.00068 1.5E-08 46.6 4.2 34 419-452 1-34 (34)
255 PF02259 FAT: FAT domain; Int 97.1 0.23 4.9E-06 55.4 26.5 157 748-909 146-341 (352)
256 KOG2610 Uncharacterized conser 97.1 0.037 8E-07 57.8 17.7 124 554-701 109-236 (491)
257 KOG0545 Aryl-hydrocarbon recep 97.1 0.0078 1.7E-07 60.0 12.1 72 842-913 228-300 (329)
258 KOG2838 Uncharacterized conser 97.0 0.00046 1E-08 68.8 3.4 63 220-284 133-197 (401)
259 PF07719 TPR_2: Tetratricopept 97.0 0.0012 2.6E-08 45.3 4.5 34 419-452 1-34 (34)
260 PF05843 Suf: Suppressor of fo 97.0 0.031 6.8E-07 59.9 17.7 137 641-817 2-144 (280)
261 KOG1550 Extracellular protein 97.0 0.1 2.3E-06 61.6 23.6 261 637-910 241-542 (552)
262 KOG0530 Protein farnesyltransf 97.0 0.39 8.4E-06 49.0 23.4 216 630-917 67-309 (318)
263 PF04184 ST7: ST7 protein; In 97.0 0.034 7.3E-07 61.6 17.5 166 614-819 176-385 (539)
264 KOG0551 Hsp90 co-chaperone CNS 97.0 0.0027 5.8E-08 66.1 8.6 101 783-909 84-185 (390)
265 PF00515 TPR_1: Tetratricopept 97.0 0.0014 3.1E-08 45.0 4.6 32 675-706 2-33 (34)
266 KOG0376 Serine-threonine phosp 97.0 0.0011 2.3E-08 72.8 5.7 97 785-881 9-109 (476)
267 KOG1308 Hsp70-interacting prot 96.9 0.00057 1.2E-08 71.4 2.9 87 823-909 127-214 (377)
268 PF10300 DUF3808: Protein of u 96.9 0.28 6E-06 56.7 25.1 122 649-810 197-335 (468)
269 KOG4642 Chaperone-dependent E3 96.9 0.0032 6.9E-08 62.6 7.6 79 626-704 30-108 (284)
270 KOG0551 Hsp90 co-chaperone CNS 96.9 0.0082 1.8E-07 62.6 10.9 107 415-545 77-183 (390)
271 KOG1914 mRNA cleavage and poly 96.9 1.2 2.6E-05 50.1 36.7 394 499-908 37-503 (656)
272 PF07719 TPR_2: Tetratricopept 96.8 0.0022 4.7E-08 44.0 4.6 32 675-706 2-33 (34)
273 COG2909 MalT ATP-dependent tra 96.8 1.1 2.4E-05 53.5 28.8 294 512-837 344-686 (894)
274 KOG1550 Extracellular protein 96.8 0.28 6.2E-06 58.0 24.8 173 499-703 230-426 (552)
275 PF14853 Fis1_TPR_C: Fis1 C-te 96.8 0.005 1.1E-07 46.9 6.4 48 879-926 3-50 (53)
276 KOG1258 mRNA processing protei 96.8 1.3 2.8E-05 50.6 27.8 104 822-925 309-414 (577)
277 KOG0530 Protein farnesyltransf 96.7 0.82 1.8E-05 46.7 23.5 220 433-684 40-269 (318)
278 KOG3364 Membrane protein invol 96.6 0.031 6.8E-07 50.7 10.8 84 843-926 31-120 (149)
279 KOG0890 Protein kinase of the 96.5 2.7 5.9E-05 55.4 31.4 104 748-851 1670-1796(2382)
280 COG3118 Thioredoxin domain-con 96.5 0.1 2.2E-06 54.3 15.8 159 517-699 136-297 (304)
281 COG2909 MalT ATP-dependent tra 96.5 2.7 5.8E-05 50.4 29.0 211 482-704 414-648 (894)
282 PF08631 SPO22: Meiosis protei 96.5 1.5 3.2E-05 47.1 25.4 162 526-703 4-186 (278)
283 KOG0985 Vesicle coat protein c 96.4 3.3 7.2E-05 50.0 34.6 232 513-803 1102-1335(1666)
284 PF13281 DUF4071: Domain of un 96.4 0.13 2.8E-06 56.4 17.0 189 640-878 141-339 (374)
285 smart00512 Skp1 Found in Skp1 96.4 0.013 2.9E-07 52.3 7.9 81 220-303 4-104 (104)
286 COG3118 Thioredoxin domain-con 96.4 0.23 5.1E-06 51.7 17.3 125 422-546 137-267 (304)
287 PF11822 DUF3342: Domain of un 96.3 0.0084 1.8E-07 63.1 6.9 114 227-342 14-137 (317)
288 PF13181 TPR_8: Tetratricopept 96.3 0.006 1.3E-07 41.8 3.8 33 419-451 1-33 (34)
289 PRK10941 hypothetical protein; 96.2 0.033 7.2E-07 58.6 10.4 82 846-927 183-265 (269)
290 COG0790 FOG: TPR repeat, SEL1 96.2 0.87 1.9E-05 49.2 22.1 160 749-912 74-272 (292)
291 KOG1308 Hsp70-interacting prot 96.1 0.0059 1.3E-07 64.1 4.4 89 790-878 124-216 (377)
292 KOG2041 WD40 repeat protein [G 96.1 1.6 3.5E-05 50.3 23.3 233 630-903 683-936 (1189)
293 KOG0890 Protein kinase of the 96.1 3.6 7.8E-05 54.4 29.0 362 520-918 1388-1796(2382)
294 COG2976 Uncharacterized protei 96.0 0.099 2.1E-06 51.0 11.9 65 518-582 129-193 (207)
295 KOG2714 SETA binding protein S 96.0 0.024 5.3E-07 61.1 8.5 90 220-313 13-110 (465)
296 PF07707 BACK: BTB And C-termi 96.0 0.0078 1.7E-07 53.7 4.2 40 324-363 1-40 (103)
297 PF02259 FAT: FAT domain; Int 96.0 2.2 4.7E-05 47.4 25.0 171 511-706 142-341 (352)
298 PF13181 TPR_8: Tetratricopept 95.9 0.014 3.1E-07 39.9 4.4 32 675-706 2-33 (34)
299 PF08424 NRDE-2: NRDE-2, neces 95.8 0.46 1E-05 52.0 17.7 150 627-777 6-183 (321)
300 KOG1665 AFH1-interacting prote 95.7 0.032 6.9E-07 54.5 7.1 90 220-312 11-105 (302)
301 PF03704 BTAD: Bacterial trans 95.7 0.15 3.3E-06 48.6 12.2 62 641-702 63-124 (146)
302 KOG1258 mRNA processing protei 95.7 5.5 0.00012 45.7 38.8 176 749-924 298-488 (577)
303 COG0790 FOG: TPR repeat, SEL1 95.6 2.1 4.6E-05 46.2 22.3 123 750-877 111-270 (292)
304 KOG4507 Uncharacterized conser 95.4 3.7 8.1E-05 46.6 22.5 90 791-880 618-712 (886)
305 PF13176 TPR_7: Tetratricopept 95.4 0.022 4.8E-07 39.6 3.8 28 421-448 1-28 (36)
306 KOG1724 SCF ubiquitin ligase, 95.3 0.093 2E-06 50.3 8.9 99 225-327 13-138 (162)
307 PF03704 BTAD: Bacterial trans 95.1 0.89 1.9E-05 43.3 15.3 58 518-575 65-123 (146)
308 KOG3824 Huntingtin interacting 95.0 0.069 1.5E-06 55.1 7.4 66 854-919 126-192 (472)
309 PRK13184 pknD serine/threonine 94.9 14 0.0003 46.2 27.8 326 555-905 482-868 (932)
310 PF13176 TPR_7: Tetratricopept 94.9 0.041 8.9E-07 38.3 3.8 30 676-705 1-30 (36)
311 PF04910 Tcf25: Transcriptiona 94.9 1.4 3.1E-05 48.9 17.9 147 630-815 30-228 (360)
312 PF13174 TPR_6: Tetratricopept 94.8 0.053 1.1E-06 36.6 4.3 33 781-813 1-33 (33)
313 PF13174 TPR_6: Tetratricopept 94.7 0.045 9.6E-07 36.9 3.7 31 846-876 2-32 (33)
314 PF08631 SPO22: Meiosis protei 94.7 7.3 0.00016 41.7 23.6 227 651-904 4-273 (278)
315 smart00875 BACK BTB And C-term 94.6 0.033 7.1E-07 49.3 3.5 40 324-363 1-40 (101)
316 PF04910 Tcf25: Transcriptiona 94.6 1.5 3.2E-05 48.8 17.1 76 507-582 32-138 (360)
317 PF03931 Skp1_POZ: Skp1 family 94.6 0.17 3.7E-06 40.2 7.2 55 220-279 3-58 (62)
318 PF09986 DUF2225: Uncharacteri 94.5 0.67 1.4E-05 47.3 13.2 95 653-777 90-194 (214)
319 COG4649 Uncharacterized protei 94.3 0.77 1.7E-05 43.9 11.7 32 841-872 164-195 (221)
320 PRK15180 Vi polysaccharide bio 94.3 3.2 6.9E-05 45.9 17.9 38 890-927 711-748 (831)
321 PF14853 Fis1_TPR_C: Fis1 C-te 94.2 0.19 4.2E-06 38.3 6.3 34 549-582 2-35 (53)
322 KOG1464 COP9 signalosome, subu 94.2 2.6 5.6E-05 43.2 15.9 223 497-729 43-294 (440)
323 KOG3783 Uncharacterized conser 94.2 6.3 0.00014 44.7 20.5 82 498-579 250-334 (546)
324 PF07079 DUF1347: Protein of u 93.8 13 0.00028 41.3 33.0 143 518-669 9-157 (549)
325 PF09613 HrpB1_HrpK: Bacterial 93.8 1.9 4.2E-05 41.1 13.6 80 642-721 12-92 (160)
326 COG5107 RNA14 Pre-mRNA 3'-end 93.7 14 0.00029 41.0 33.5 380 503-906 30-495 (660)
327 PF14561 TPR_20: Tetratricopep 93.7 0.58 1.2E-05 40.4 9.2 47 626-672 8-54 (90)
328 KOG3824 Huntingtin interacting 93.6 0.19 4.2E-06 52.0 7.1 74 642-715 118-192 (472)
329 PF14561 TPR_20: Tetratricopep 93.3 0.66 1.4E-05 40.0 8.9 64 659-722 7-73 (90)
330 PF04781 DUF627: Protein of un 93.2 0.45 9.7E-06 42.2 7.8 29 787-815 3-31 (111)
331 COG5201 SKP1 SCF ubiquitin lig 93.1 0.76 1.6E-05 41.0 9.0 95 220-319 4-123 (158)
332 smart00028 TPR Tetratricopepti 93.0 0.16 3.5E-06 33.2 3.9 29 847-875 4-32 (34)
333 smart00028 TPR Tetratricopepti 93.0 0.14 3E-06 33.5 3.5 32 420-451 2-33 (34)
334 TIGR02561 HrpB1_HrpK type III 92.9 2.7 5.8E-05 39.5 12.7 105 645-775 15-120 (153)
335 PF12968 DUF3856: Domain of Un 92.8 1.7 3.8E-05 38.7 10.6 63 844-906 55-129 (144)
336 KOG2041 WD40 repeat protein [G 92.6 26 0.00056 41.0 31.9 31 669-699 847-877 (1189)
337 KOG1464 COP9 signalosome, subu 92.5 6.8 0.00015 40.3 15.9 216 527-762 39-286 (440)
338 PF09986 DUF2225: Uncharacteri 92.5 1.2 2.6E-05 45.4 11.1 93 761-876 90-197 (214)
339 KOG1778 CREB binding protein/P 92.3 0.064 1.4E-06 57.3 1.6 145 220-367 29-174 (319)
340 KOG2396 HAT (Half-A-TPR) repea 92.0 25 0.00054 39.7 37.6 86 841-926 457-545 (568)
341 PF08424 NRDE-2: NRDE-2, neces 91.9 10 0.00022 41.5 18.2 82 501-582 5-99 (321)
342 PF09613 HrpB1_HrpK: Bacterial 91.8 3.6 7.8E-05 39.4 12.4 100 823-924 23-123 (160)
343 PF13374 TPR_10: Tetratricopep 91.4 0.33 7.1E-06 34.6 4.1 30 419-448 2-31 (42)
344 PRK10941 hypothetical protein; 91.4 1.5 3.2E-05 46.4 10.5 66 642-707 183-248 (269)
345 PF12968 DUF3856: Domain of Un 91.2 4.9 0.00011 36.0 11.6 101 522-669 16-129 (144)
346 PF01466 Skp1: Skp1 family, di 91.0 0.6 1.3E-05 39.1 5.8 52 286-337 11-64 (78)
347 PF04781 DUF627: Protein of un 90.8 2.3 5E-05 37.8 9.4 28 555-582 3-30 (111)
348 PF10602 RPN7: 26S proteasome 90.7 5 0.00011 39.7 13.0 118 733-874 18-143 (177)
349 COG2912 Uncharacterized conser 90.6 1.3 2.8E-05 46.0 8.9 76 849-924 186-262 (269)
350 COG5107 RNA14 Pre-mRNA 3'-end 90.3 34 0.00074 38.1 35.6 280 407-702 30-361 (660)
351 COG4976 Predicted methyltransf 90.0 0.64 1.4E-05 46.4 5.8 57 822-878 7-63 (287)
352 COG4976 Predicted methyltransf 89.7 1 2.2E-05 45.1 6.9 59 649-707 4-62 (287)
353 KOG3364 Membrane protein invol 89.6 2.7 5.9E-05 38.6 9.0 68 515-582 32-105 (149)
354 KOG1463 26S proteasome regulat 89.5 34 0.00073 36.8 22.2 265 644-909 8-319 (411)
355 KOG1538 Uncharacterized conser 89.4 34 0.00074 39.7 19.1 48 524-575 565-612 (1081)
356 KOG0511 Ankyrin repeat protein 89.3 0.5 1.1E-05 50.2 4.8 85 220-309 152-237 (516)
357 KOG2396 HAT (Half-A-TPR) repea 89.2 45 0.00097 37.8 29.7 89 784-872 464-558 (568)
358 PF11207 DUF2989: Protein of u 89.0 13 0.00027 37.1 13.9 81 815-897 112-198 (203)
359 KOG2422 Uncharacterized conser 88.9 18 0.0004 41.4 16.6 148 762-909 252-451 (665)
360 KOG0529 Protein geranylgeranyl 88.7 16 0.00035 40.2 15.7 99 826-924 91-196 (421)
361 COG3914 Spy Predicted O-linked 88.6 7.1 0.00015 44.8 13.3 119 799-917 50-182 (620)
362 COG4649 Uncharacterized protei 88.3 26 0.00056 34.0 15.8 63 644-706 62-126 (221)
363 PF10602 RPN7: 26S proteasome 88.2 4 8.7E-05 40.3 10.1 96 516-611 37-136 (177)
364 PF13374 TPR_10: Tetratricopep 88.0 1 2.3E-05 31.9 4.5 30 675-704 3-32 (42)
365 KOG1538 Uncharacterized conser 87.9 23 0.0005 41.0 16.6 99 639-775 746-844 (1081)
366 PF11207 DUF2989: Protein of u 87.7 22 0.00048 35.5 14.6 40 528-567 153-197 (203)
367 KOG1310 WD40 repeat protein [G 87.0 2 4.3E-05 48.1 7.6 87 792-878 386-479 (758)
368 PF12862 Apc5: Anaphase-promot 86.8 3.2 6.9E-05 36.2 7.6 59 649-707 7-74 (94)
369 COG5191 Uncharacterized conser 86.6 1.7 3.8E-05 45.3 6.6 89 833-921 96-186 (435)
370 TIGR02561 HrpB1_HrpK type III 86.2 4 8.8E-05 38.3 8.2 72 823-894 23-95 (153)
371 COG4941 Predicted RNA polymera 86.2 14 0.0003 39.5 12.8 95 829-925 315-413 (415)
372 KOG3807 Predicted membrane pro 86.0 52 0.0011 35.1 17.1 67 636-704 180-246 (556)
373 KOG2715 Uncharacterized conser 85.1 6.5 0.00014 37.1 8.8 100 216-318 18-122 (210)
374 PF10516 SHNi-TPR: SHNi-TPR; 84.9 1.2 2.5E-05 31.4 3.1 29 420-448 2-30 (38)
375 PF04053 Coatomer_WDAD: Coatom 84.5 37 0.00081 38.9 16.8 128 650-806 271-399 (443)
376 KOG1463 26S proteasome regulat 83.8 68 0.0015 34.6 21.0 165 644-841 132-318 (411)
377 PRK15180 Vi polysaccharide bio 82.7 6.1 0.00013 43.8 8.9 159 525-707 299-461 (831)
378 COG2912 Uncharacterized conser 81.3 5.6 0.00012 41.5 7.7 49 630-678 205-253 (269)
379 PF04053 Coatomer_WDAD: Coatom 81.0 21 0.00045 40.9 13.0 100 758-870 271-373 (443)
380 COG5159 RPN6 26S proteasome re 80.8 78 0.0017 33.2 21.1 264 644-909 7-317 (421)
381 KOG1310 WD40 repeat protein [G 80.7 4.2 9.2E-05 45.6 6.9 90 754-843 380-478 (758)
382 PF07721 TPR_4: Tetratricopept 80.4 2.3 5E-05 26.9 3.0 23 676-698 3-25 (26)
383 PRK11619 lytic murein transgly 80.1 1.5E+02 0.0032 36.0 40.2 134 760-903 324-465 (644)
384 PF10516 SHNi-TPR: SHNi-TPR; 80.0 3.1 6.8E-05 29.2 3.7 29 845-873 2-30 (38)
385 PF12862 Apc5: Anaphase-promot 79.6 7.9 0.00017 33.6 7.2 59 524-582 7-75 (94)
386 PRK11619 lytic murein transgly 79.4 1.5E+02 0.0033 35.8 34.0 126 517-674 35-163 (644)
387 KOG3807 Predicted membrane pro 79.3 22 0.00048 37.7 11.2 30 848-877 279-308 (556)
388 PRK13184 pknD serine/threonine 78.4 2E+02 0.0042 36.4 32.9 108 424-550 480-588 (932)
389 PF10579 Rapsyn_N: Rapsyn N-te 78.3 14 0.0003 30.7 7.5 55 851-905 13-71 (80)
390 PF10579 Rapsyn_N: Rapsyn N-te 78.3 14 0.0003 30.7 7.4 61 643-703 9-72 (80)
391 KOG4814 Uncharacterized conser 77.3 1.6E+02 0.0034 34.7 25.1 99 783-905 357-456 (872)
392 PF07721 TPR_4: Tetratricopept 77.3 3.6 7.8E-05 26.0 3.2 23 846-868 3-25 (26)
393 KOG0546 HSP90 co-chaperone CPR 77.1 2.7 5.8E-05 45.1 4.0 84 843-926 274-358 (372)
394 COG3629 DnrI DNA-binding trans 77.0 21 0.00046 37.8 10.6 64 640-703 153-216 (280)
395 COG5191 Uncharacterized conser 77.0 4.4 9.4E-05 42.5 5.3 78 630-707 97-175 (435)
396 KOG0128 RNA-binding protein SA 75.7 2E+02 0.0042 35.0 24.8 265 626-890 99-393 (881)
397 KOG1839 Uncharacterized protei 75.3 42 0.00091 42.5 13.9 164 641-808 933-1127(1236)
398 smart00386 HAT HAT (Half-A-TPR 75.0 5.9 0.00013 26.0 4.1 31 891-921 1-31 (33)
399 KOG2581 26S proteasome regulat 74.8 1E+02 0.0022 34.1 14.9 33 641-673 248-280 (493)
400 COG1747 Uncharacterized N-term 74.7 1.6E+02 0.0035 33.6 17.2 163 751-916 69-244 (711)
401 KOG3783 Uncharacterized conser 74.7 1.7E+02 0.0036 33.8 26.3 74 630-705 257-334 (546)
402 PF07720 TPR_3: Tetratricopept 74.1 8.6 0.00019 26.7 4.6 31 675-705 2-34 (36)
403 COG1747 Uncharacterized N-term 73.3 1.8E+02 0.0038 33.4 20.9 130 303-448 30-160 (711)
404 COG3914 Spy Predicted O-linked 73.0 68 0.0015 37.2 13.7 126 534-683 50-185 (620)
405 KOG1839 Uncharacterized protei 72.5 38 0.00082 42.9 12.6 168 518-703 935-1128(1236)
406 KOG2063 Vacuolar assembly/sort 72.2 1.1E+02 0.0024 37.9 16.2 29 642-670 506-534 (877)
407 KOG3840 Uncharaterized conserv 72.0 6.9 0.00015 40.6 5.3 82 220-302 98-183 (438)
408 PF07720 TPR_3: Tetratricopept 71.2 12 0.00026 26.0 4.7 30 550-579 3-34 (36)
409 KOG0529 Protein geranylgeranyl 71.0 1.1E+02 0.0024 33.9 14.3 168 499-686 47-241 (421)
410 TIGR03504 FimV_Cterm FimV C-te 70.2 14 0.00031 26.9 5.2 22 883-904 5-26 (44)
411 PF04190 DUF410: Protein of un 69.0 1.4E+02 0.0031 31.5 14.7 65 842-906 88-170 (260)
412 PF12739 TRAPPC-Trs85: ER-Golg 68.4 2E+02 0.0044 32.7 16.9 27 751-777 373-399 (414)
413 KOG0276 Vesicle coat complex C 68.3 41 0.00088 38.9 10.6 27 751-777 669-695 (794)
414 COG3629 DnrI DNA-binding trans 68.1 20 0.00044 37.9 8.0 61 845-905 154-215 (280)
415 KOG0687 26S proteasome regulat 66.2 66 0.0014 34.5 10.9 84 399-482 81-175 (393)
416 KOG2723 Uncharacterized conser 66.1 17 0.00037 36.9 6.6 97 216-316 6-108 (221)
417 COG4455 ImpE Protein of avirul 65.8 24 0.00052 35.5 7.3 54 824-877 15-68 (273)
418 PF15015 NYD-SP12_N: Spermatog 64.4 22 0.00048 39.1 7.4 56 645-700 233-288 (569)
419 PF00244 14-3-3: 14-3-3 protei 63.6 1.9E+02 0.0041 30.0 14.8 64 517-580 3-69 (236)
420 PF10373 EST1_DNA_bind: Est1 D 62.7 24 0.00053 37.4 7.8 61 659-719 1-62 (278)
421 COG3014 Uncharacterized protei 62.6 1.2E+02 0.0026 32.7 12.0 174 629-821 44-254 (449)
422 PF11817 Foie-gras_1: Foie gra 62.5 1.1E+02 0.0024 32.0 12.4 59 549-607 179-237 (247)
423 PF10373 EST1_DNA_bind: Est1 D 62.2 29 0.00062 36.9 8.2 61 500-560 1-62 (278)
424 KOG2581 26S proteasome regulat 60.7 2.8E+02 0.006 30.9 17.4 68 640-707 209-280 (493)
425 PF14863 Alkyl_sulf_dimr: Alky 59.9 45 0.00098 31.4 7.9 56 871-926 64-119 (141)
426 KOG0686 COP9 signalosome, subu 58.5 1.2E+02 0.0027 33.5 11.6 29 419-447 150-178 (466)
427 COG3947 Response regulator con 58.4 36 0.00077 35.8 7.3 61 642-702 281-341 (361)
428 COG4941 Predicted RNA polymera 58.3 2.7E+02 0.0059 30.2 14.6 181 499-707 214-398 (415)
429 cd02682 MIT_AAA_Arch MIT: doma 58.2 54 0.0012 27.1 7.0 31 418-448 5-35 (75)
430 KOG0686 COP9 signalosome, subu 57.7 1.8E+02 0.0038 32.4 12.6 61 749-809 151-216 (466)
431 PF04840 Vps16_C: Vps16, C-ter 57.5 2.9E+02 0.0063 30.2 23.2 48 844-899 237-284 (319)
432 COG3947 Response regulator con 57.5 31 0.00068 36.2 6.8 56 848-903 283-339 (361)
433 COG5159 RPN6 26S proteasome re 57.2 2.6E+02 0.0056 29.5 23.6 104 753-856 211-331 (421)
434 PF15015 NYD-SP12_N: Spermatog 57.0 1E+02 0.0022 34.3 10.7 74 647-720 183-275 (569)
435 TIGR03504 FimV_Cterm FimV C-te 55.4 23 0.0005 25.9 4.0 25 848-872 3-27 (44)
436 PF04190 DUF410: Protein of un 55.3 2.8E+02 0.006 29.3 20.0 66 638-703 88-170 (260)
437 KOG0546 HSP90 co-chaperone CPR 55.0 30 0.00065 37.4 6.4 54 630-683 299-352 (372)
438 PF11846 DUF3366: Domain of un 54.9 37 0.00079 34.0 7.0 52 860-911 127-178 (193)
439 PF12854 PPR_1: PPR repeat 54.4 28 0.0006 23.6 4.1 27 875-901 5-31 (34)
440 smart00299 CLH Clathrin heavy 54.4 1.8E+02 0.004 26.9 13.2 48 650-698 17-64 (140)
441 KOG2114 Vacuolar assembly/sort 53.8 3.1E+02 0.0067 33.5 14.7 240 649-912 343-596 (933)
442 PF00651 BTB: BTB/POZ domain; 53.6 16 0.00035 32.4 3.8 30 321-350 81-110 (111)
443 PF12739 TRAPPC-Trs85: ER-Golg 53.1 2.5E+02 0.0055 31.9 14.2 167 518-705 211-401 (414)
444 smart00386 HAT HAT (Half-A-TPR 53.0 27 0.00059 22.6 4.0 29 654-682 1-29 (33)
445 PF09670 Cas_Cas02710: CRISPR- 52.3 2.7E+02 0.0058 31.3 13.9 62 642-703 133-198 (379)
446 PF09670 Cas_Cas02710: CRISPR- 51.9 3.1E+02 0.0067 30.8 14.3 28 421-448 133-160 (379)
447 PF11817 Foie-gras_1: Foie gra 51.6 78 0.0017 33.1 9.0 80 727-806 154-244 (247)
448 KOG2422 Uncharacterized conser 51.0 4.7E+02 0.01 30.7 20.0 74 633-706 277-374 (665)
449 COG5187 RPN7 26S proteasome re 50.6 1.5E+02 0.0033 31.2 10.3 100 416-542 112-219 (412)
450 PF13041 PPR_2: PPR repeat fam 50.0 54 0.0012 24.2 5.6 39 843-881 2-42 (50)
451 PF13041 PPR_2: PPR repeat fam 49.8 59 0.0013 24.0 5.8 30 674-703 3-32 (50)
452 PF12854 PPR_1: PPR repeat 49.8 37 0.0008 23.0 4.2 26 674-699 7-32 (34)
453 PF08311 Mad3_BUB1_I: Mad3/BUB 48.4 2.2E+02 0.0048 26.2 13.8 112 694-807 5-126 (126)
454 PF11822 DUF3342: Domain of un 48.2 6 0.00013 42.2 0.0 53 306-360 61-113 (317)
455 KOG4279 Serine/threonine prote 46.6 1.9E+02 0.004 34.7 11.3 162 748-910 201-399 (1226)
456 COG3014 Uncharacterized protei 46.3 4.2E+02 0.0092 28.8 14.3 115 782-914 127-250 (449)
457 COG4455 ImpE Protein of avirul 45.5 99 0.0021 31.3 7.8 59 649-707 10-68 (273)
458 COG5187 RPN7 26S proteasome re 44.4 4.2E+02 0.009 28.2 12.9 135 636-777 69-221 (412)
459 cd02682 MIT_AAA_Arch MIT: doma 44.3 45 0.00098 27.5 4.5 22 850-871 12-33 (75)
460 PF10255 Paf67: RNA polymerase 44.2 54 0.0012 36.8 6.6 59 517-576 124-192 (404)
461 cd02680 MIT_calpain7_2 MIT: do 43.8 33 0.00072 28.3 3.7 17 857-873 19-35 (75)
462 PF10255 Paf67: RNA polymerase 43.6 36 0.00079 38.1 5.2 59 643-702 125-192 (404)
463 PF05053 Menin: Menin; InterP 43.5 1.6E+02 0.0035 34.2 10.1 44 499-542 297-345 (618)
464 KOG2075 Topoisomerase TOP1-int 43.3 28 0.0006 39.0 4.1 44 318-365 185-228 (521)
465 KOG4014 Uncharacterized conser 42.6 3.5E+02 0.0075 26.7 14.6 66 637-703 31-102 (248)
466 cd02683 MIT_1 MIT: domain cont 40.8 1.2E+02 0.0026 25.2 6.7 31 418-448 5-35 (77)
467 smart00671 SEL1 Sel1-like repe 39.2 48 0.001 22.2 3.5 29 421-449 3-35 (36)
468 PF04212 MIT: MIT (microtubule 38.4 63 0.0014 26.0 4.6 31 418-448 4-34 (69)
469 PF01535 PPR: PPR repeat; Int 37.9 53 0.0011 20.9 3.5 26 847-872 3-28 (31)
470 KOG4151 Myosin assembly protei 37.7 1.5E+02 0.0032 35.8 9.0 79 845-923 92-173 (748)
471 PF08238 Sel1: Sel1 repeat; I 36.9 72 0.0016 21.8 4.2 30 420-449 2-38 (39)
472 PF11846 DUF3366: Domain of un 36.8 80 0.0017 31.5 6.1 51 532-582 128-178 (193)
473 KOG1920 IkappaB kinase complex 36.7 1E+03 0.023 30.6 20.2 289 529-908 771-1102(1265)
474 PHA02537 M terminase endonucle 36.3 72 0.0016 32.8 5.6 43 882-925 174-225 (230)
475 cd02681 MIT_calpain7_1 MIT: do 36.1 48 0.001 27.5 3.5 16 857-872 19-34 (76)
476 PF00244 14-3-3: 14-3-3 protei 35.9 5.2E+02 0.011 26.8 17.5 42 676-717 3-46 (236)
477 KOG1497 COP9 signalosome, subu 35.9 3E+02 0.0064 29.7 9.9 94 590-702 105-212 (399)
478 cd02681 MIT_calpain7_1 MIT: do 35.5 70 0.0015 26.6 4.4 31 418-448 5-35 (76)
479 KOG3342 Signal peptidase I [In 34.5 26 0.00055 32.8 1.8 18 218-235 81-100 (180)
480 smart00745 MIT Microtubule Int 34.4 2E+02 0.0042 23.7 7.1 32 417-448 6-37 (77)
481 COG5536 BET4 Protein prenyltra 34.3 3.5E+02 0.0077 28.6 10.0 124 798-921 50-194 (328)
482 KOG2063 Vacuolar assembly/sort 33.4 1E+03 0.023 29.8 15.5 114 418-546 503-622 (877)
483 KOG0687 26S proteasome regulat 33.4 6.6E+02 0.014 27.3 12.6 97 674-777 104-210 (393)
484 smart00299 CLH Clathrin heavy 32.2 2.4E+02 0.0052 26.1 8.4 113 790-918 17-132 (140)
485 PF05053 Menin: Menin; InterP 32.0 3.1E+02 0.0067 32.0 10.0 77 785-872 262-346 (618)
486 smart00101 14_3_3 14-3-3 homol 31.9 6.1E+02 0.013 26.4 17.1 42 677-718 4-49 (244)
487 TIGR00756 PPR pentatricopeptid 31.1 95 0.002 20.1 4.0 26 847-872 3-28 (35)
488 PF14863 Alkyl_sulf_dimr: Alky 30.5 2.3E+02 0.005 26.8 7.5 53 547-605 69-121 (141)
489 KOG4521 Nuclear pore complex, 30.0 1.3E+03 0.028 29.7 16.0 193 639-867 919-1125(1480)
490 PF10932 DUF2783: Protein of u 29.5 1.5E+02 0.0033 23.2 4.9 49 82-134 9-59 (60)
491 cd02678 MIT_VPS4 MIT: domain c 29.5 2.4E+02 0.0052 23.1 6.8 31 418-448 5-35 (75)
492 cd02679 MIT_spastin MIT: domai 29.1 90 0.0019 26.1 4.0 16 857-872 21-36 (79)
493 PF13812 PPR_3: Pentatricopept 28.5 1.3E+02 0.0027 19.6 4.2 27 846-872 3-29 (34)
494 PF02064 MAS20: MAS20 protein 28.4 1E+02 0.0022 28.2 4.6 37 883-919 69-105 (121)
495 KOG2114 Vacuolar assembly/sort 28.2 1.2E+03 0.026 28.8 14.3 88 516-613 369-456 (933)
496 PF04212 MIT: MIT (microtubule 28.1 1.2E+02 0.0025 24.4 4.6 26 751-776 8-33 (69)
497 KOG0128 RNA-binding protein SA 28.1 1.2E+03 0.026 28.7 35.3 206 499-719 168-393 (881)
498 cd02677 MIT_SNX15 MIT: domain 28.0 1.1E+02 0.0024 25.3 4.4 32 417-448 4-35 (75)
499 PF10952 DUF2753: Protein of u 27.9 2E+02 0.0044 26.3 6.2 65 847-911 4-88 (140)
500 PF08626 TRAPPC9-Trs120: Trans 27.5 5.2E+02 0.011 34.1 12.7 79 731-809 358-474 (1185)
No 1
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=6e-43 Score=373.46 Aligned_cols=434 Identities=18% Similarity=0.148 Sum_probs=383.0
Q ss_pred HHHhhHHHHhcccHHHHHHHHHHHHhcCccccHHH-HHHHHHHhchHHHHHHHHHhhhcCCCcchhhhHHHHHhhhhhHH
Q 002375 422 LHQLGCVMFEREEYKDACYYFEAAADAGHIYSLAG-LARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNLGREK 500 (929)
Q Consensus 422 ~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~~~a~-la~~~~~~g~a~~a~~~~~~l~~~~~~~~~~~~~~~l~~~~~~A 500 (929)
...++...++.|+|++|++....+-+.+|.+.... +...-+-++. ..+..
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~-----------------------------r~d~s 101 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGS-----------------------------RLDKS 101 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhccc-----------------------------chhhh
Confidence 45678888999999999999999999988876531 1111111111 11133
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccC-CHhHHHHHHHHHHHhccHHHHHHHHHHHHhhcC
Q 002375 501 IVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLALLALES 579 (929)
Q Consensus 501 i~~~~~al~l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~~g~~~eA~~~~~~al~~~p 579 (929)
.+--..+++.+|.-+++|.++|.++.+.|++++|+..|+.+++++| ..+.|.++|.++...|+.+.|...|..+++++|
T Consensus 102 ~a~~~~a~r~~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP 181 (966)
T KOG4626|consen 102 SAGSLLAIRKNPQGAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNP 181 (966)
T ss_pred hhhhhhhhhccchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCc
Confidence 3334567888899999999999999999999999999999998888 778899999999999999999999999999999
Q ss_pred CchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHH
Q 002375 580 NYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAA 659 (929)
Q Consensus 580 ~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~d~~~al~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A 659 (929)
+.. .+...+|.+....|+..+| -.+|.++++.+|..+.+|.++|-++..+|+...|
T Consensus 182 ~l~------ca~s~lgnLlka~Grl~ea------------------~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~a 237 (966)
T KOG4626|consen 182 DLY------CARSDLGNLLKAEGRLEEA------------------KACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLA 237 (966)
T ss_pred chh------hhhcchhHHHHhhcccchh------------------HHHHHHHHhhCCceeeeehhcchHHhhcchHHHH
Confidence 888 5666688899999998888 4566899999999999999999999999999999
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch-HHHHHHHHHHHhcCCCCCChHHHHHHHHHHh
Q 002375 660 MRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEAL 738 (929)
Q Consensus 660 ~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~l~p~~-~a~~~l~~~l~~~~~~~~~~~~a~~~~~~Al 738 (929)
+..|++|++++|...++|+++|.+|...+.+++|+.+|.+|+.+.|++ .++-+++..|.+.| .++-|+
T Consensus 238 iq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG-----------~ldlAI 306 (966)
T KOG4626|consen 238 IQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQG-----------LLDLAI 306 (966)
T ss_pred HHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccc-----------cHHHHH
Confidence 999999999999999999999999999999999999999999999999 88888888888887 788888
Q ss_pred hchhccCc--h--hHHHHHHHHHHHHcCCHHHHHHHHHHHHcC--CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccC
Q 002375 739 RCPSDGLR--K--GQALNNLGSIYVECGKLDQAENCYINALDI--KHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQY 812 (929)
Q Consensus 739 ~~~~~~l~--~--~~a~~~lg~~~~~~g~~~eA~~~~~~al~~--~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 812 (929)
.+|++++. | .++++++|.++...|+..+|.++|.+++.+ .++++.++||.+|..+|++++|...|.++++..|.
T Consensus 307 ~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~ 386 (966)
T KOG4626|consen 307 DTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPE 386 (966)
T ss_pred HHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChh
Confidence 88888755 3 499999999999999999999999999999 78899999999999999999999999999999999
Q ss_pred CHHHHHHHh----hcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHH-HHHHHH
Q 002375 813 SASAFEKRS----EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLH-LRAAFY 887 (929)
Q Consensus 813 ~~~~~~~lg----~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~-~la~~~ 887 (929)
.+.+..+++ ..|++++|+.+|++++++.|+.++++.++|.+|..+|+...|+..|.+|+.++|....++ ++|.+|
T Consensus 387 ~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~ 466 (966)
T KOG4626|consen 387 FAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIY 466 (966)
T ss_pred hhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHh
Confidence 999999999 679999999999999999999999999999999999999999999999999999998888 889999
Q ss_pred HHcCCHHHHHHHHHHHhccCCCCHHHHHHHHH
Q 002375 888 ESIGDLTSAIRDSQAALCLDPNHMETLDLYNR 919 (929)
Q Consensus 888 ~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~ 919 (929)
...|+..+|+..|+.+|+++|+.++++-++.-
T Consensus 467 kDsGni~~AI~sY~~aLklkPDfpdA~cNllh 498 (966)
T KOG4626|consen 467 KDSGNIPEAIQSYRTALKLKPDFPDAYCNLLH 498 (966)
T ss_pred hccCCcHHHHHHHHHHHccCCCCchhhhHHHH
Confidence 99999999999999999999999999876643
No 2
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=1.3e-39 Score=347.98 Aligned_cols=382 Identities=19% Similarity=0.176 Sum_probs=351.0
Q ss_pred HHHHHHHHHHhhHHHHhcccHHHHHHHHHHHHhcCccccHHHHHHHHHHhchHHHHHHHHHhhhcCCCcchhhhHHHHHh
Q 002375 415 RWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGHIYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLY 494 (929)
Q Consensus 415 ~~~~a~~~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~~~a~la~~~~~~g~a~~a~~~~~~l~~~~~~~~~~~~~~~l~ 494 (929)
.+|-+++|.++|+++-++|++++|+..|+.+++++|.+.. +|.+. +.++.
T Consensus 112 ~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fid-----a~inl-------------------------a~al~ 161 (966)
T KOG4626|consen 112 NPQGAEAYSNLANILKERGQLQDALALYRAAIELKPKFID-----AYINL-------------------------AAALV 161 (966)
T ss_pred cchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhH-----HHhhH-------------------------HHHHH
Confidence 4567889999999999999999999999999999998876 23222 22233
Q ss_pred hh--hhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccC-CHhHHHHHHHHHHHhccHHHHHHHH
Q 002375 495 NL--GREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDT 571 (929)
Q Consensus 495 ~~--~~~Ai~~~~~al~l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~~g~~~eA~~~~ 571 (929)
.. +..|..+|..|++++|...-+...+|..+-.+|+.++|...|.++++..| -.-+|.++|.++...|+.-.|+..|
T Consensus 162 ~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y 241 (966)
T KOG4626|consen 162 TQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHY 241 (966)
T ss_pred hcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHH
Confidence 33 34889999999999999999999999999999999999999999998888 5556899999999999999999999
Q ss_pred HHHHhhcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHHH
Q 002375 572 LALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLL 651 (929)
Q Consensus 572 ~~al~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~d~~~al~~~~~al~~~p~~~~~~~~lg~~~~ 651 (929)
+++++++|+.. +++..+|.++...+.+++| +.+|.+++...|+++.++.++|.+|+
T Consensus 242 ~eAvkldP~f~------dAYiNLGnV~ke~~~~d~A------------------vs~Y~rAl~lrpn~A~a~gNla~iYy 297 (966)
T KOG4626|consen 242 EEAVKLDPNFL------DAYINLGNVYKEARIFDRA------------------VSCYLRALNLRPNHAVAHGNLACIYY 297 (966)
T ss_pred HHhhcCCCcch------HHHhhHHHHHHHHhcchHH------------------HHHHHHHHhcCCcchhhccceEEEEe
Confidence 99999999999 8888999999999999999 77789999999999999999999999
Q ss_pred HhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHHHHHhcCCCCCChHHHH
Q 002375 652 RLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVI 731 (929)
Q Consensus 652 ~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~l~p~~~a~~~l~~~l~~~~~~~~~~~~a~ 731 (929)
.+|..+-|+..|+++++++|+.++++.++|.++...|+..||..+|.+++.+.|++
T Consensus 298 eqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~h------------------------ 353 (966)
T KOG4626|consen 298 EQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNH------------------------ 353 (966)
T ss_pred ccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCcc------------------------
Confidence 99999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC--CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 002375 732 QLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI--KHTRAHQGLARVYYLKNELKAAYDEMTKLLEK 809 (929)
Q Consensus 732 ~~~~~Al~~~~~~l~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~--~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~ 809 (929)
+++.++||.+|..+|++++|...|.++++. .-..++.+||.+|.++|++++|+..|+.++.+
T Consensus 354 ----------------adam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI 417 (966)
T KOG4626|consen 354 ----------------ADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI 417 (966)
T ss_pred ----------------HHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc
Confidence 677899999999999999999999999999 44578999999999999999999999999999
Q ss_pred ccCCHHHHHHHh----hcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHH-HHH
Q 002375 810 AQYSASAFEKRS----EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLH-LRA 884 (929)
Q Consensus 810 ~p~~~~~~~~lg----~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~-~la 884 (929)
.|..++++.++| ++|+.+.|+++|.+|+..+|..++++.+||.+|...|+..+||..|+.+++++|+.+.++ +++
T Consensus 418 ~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNll 497 (966)
T KOG4626|consen 418 KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLL 497 (966)
T ss_pred CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHH
Confidence 999999999999 789999999999999999999999999999999999999999999999999999998777 555
Q ss_pred HHHHHc
Q 002375 885 AFYESI 890 (929)
Q Consensus 885 ~~~~~~ 890 (929)
.++.-.
T Consensus 498 h~lq~v 503 (966)
T KOG4626|consen 498 HCLQIV 503 (966)
T ss_pred HHHHHH
Confidence 554433
No 3
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=3.6e-33 Score=352.12 Aligned_cols=490 Identities=14% Similarity=0.078 Sum_probs=393.6
Q ss_pred chHHHHHHHHHhhcchHHHHHHHHHHHhhHHHHhcccHHHHHHHHHHHHhcCccccHH--HHHHHHHHhchHHHHHHHHH
Q 002375 398 SNTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGHIYSLA--GLARAKYKVGQQYSAYKLIN 475 (929)
Q Consensus 398 ~~~~~~~Le~l~~~~~~~~~~a~~~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~~~a--~la~~~~~~g~a~~a~~~~~ 475 (929)
.+.+...++++.+..+. ....++.+|..+...|++++|+..|+++++.+|..... .++..+...|+...+.....
T Consensus 379 ~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 455 (899)
T TIGR02917 379 FEKAAEYLAKATELDPE---NAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAK 455 (899)
T ss_pred HHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHH
Confidence 34455555554443332 23455666777777777777777777777766554433 44455555555444444333
Q ss_pred hhhcC--CCcchhhhHHHHHhhhhh--HHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccC-CHhH
Q 002375 476 SIISE--HKPTGWMYQERSLYNLGR--EKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDC 550 (929)
Q Consensus 476 ~l~~~--~~~~~~~~~~~~l~~~~~--~Ai~~~~~al~l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~ 550 (929)
..... ..+..|...+..+...++ +|+..|+++++.+|++..+++.+|.++...|++++|+..|++++...| +...
T Consensus 456 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 535 (899)
T TIGR02917 456 KLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRA 535 (899)
T ss_pred HHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHH
Confidence 33322 134556666666666555 777777777777777777777777777777777777777777776666 5566
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHH
Q 002375 551 LELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVIN 630 (929)
Q Consensus 551 ~~~~a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~d~~~al~~~~ 630 (929)
+..++.++...|++++|+..+++++..+|.+. .....++..+...|++++|...+ .
T Consensus 536 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~A~~~~------------------~ 591 (899)
T TIGR02917 536 ILALAGLYLRTGNEEEAVAWLEKAAELNPQEI------EPALALAQYYLGKGQLKKALAIL------------------N 591 (899)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCccch------hHHHHHHHHHHHCCCHHHHHHHH------------------H
Confidence 77777777777777777777777777777766 55556677777777777775544 8
Q ss_pred HHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch-HH
Q 002375 631 QMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EA 709 (929)
Q Consensus 631 ~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~l~p~~-~a 709 (929)
+++...|.++.+|..+|.++...|++++|+..|+++++.+|.++..+..+|.++...|++++|+..|+++++.+|++ .+
T Consensus 592 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 671 (899)
T TIGR02917 592 EAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEA 671 (899)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999998 89
Q ss_pred HHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCc----hhHHHHHHHHHHHHcCCHHHHHHHHHHHHcCC-ChHHHH
Q 002375 710 FFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLR----KGQALNNLGSIYVECGKLDQAENCYINALDIK-HTRAHQ 784 (929)
Q Consensus 710 ~~~l~~~l~~~~~~~~~~~~a~~~~~~Al~~~~~~l~----~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~-~~~a~~ 784 (929)
+..++..+...+ .+++|+..++.... ....+..+|.++...|++++|+..|++++... ....+.
T Consensus 672 ~~~l~~~~~~~~-----------~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 740 (899)
T TIGR02917 672 QIGLAQLLLAAK-----------RTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAI 740 (899)
T ss_pred HHHHHHHHHHcC-----------CHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHH
Confidence 999999998887 66777766666533 35788899999999999999999999999983 347888
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHh----hcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCH
Q 002375 785 GLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS----EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKE 860 (929)
Q Consensus 785 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg----~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~ 860 (929)
.++.++...|++++|.+.++++++..|++..++..+| ..|++++|+..|+++++.+|.++.++..+|.++...|+
T Consensus 741 ~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~- 819 (899)
T TIGR02917 741 KLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD- 819 (899)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-
Confidence 9999999999999999999999999999999999888 57999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCchHHH-HHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHhhhhh
Q 002375 861 VEAVEELSKAIAFKPDLQMLH-LRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNRARDQASH 926 (929)
Q Consensus 861 ~eA~~~l~kal~~~p~~~~~~-~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~l~~~~~~ 926 (929)
.+|+..++++++..|+++... .+|.++...|++++|+..|+++++.+|.++.++..+..+....++
T Consensus 820 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~ 886 (899)
T TIGR02917 820 PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGR 886 (899)
T ss_pred HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCC
Confidence 889999999999999997665 779999999999999999999999999999999999888766544
No 4
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=2.2e-32 Score=344.91 Aligned_cols=493 Identities=18% Similarity=0.148 Sum_probs=348.6
Q ss_pred HHHHHHHHHHHhhHHHHhcccHHHHHHHHHHHHhcCccccHH--HHHHHHHHhchHHHHHHHHHhhhcC--CCcchhhhH
Q 002375 414 ERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGHIYSLA--GLARAKYKVGQQYSAYKLINSIISE--HKPTGWMYQ 489 (929)
Q Consensus 414 ~~~~~a~~~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~~~a--~la~~~~~~g~a~~a~~~~~~l~~~--~~~~~~~~~ 489 (929)
..+..+..++.+|..++..|++++|+..|+++++.+|....+ .++..+...|+...+.+.+...+.. .....|+..
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 199 (899)
T TIGR02917 120 DDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLK 199 (899)
T ss_pred CchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 344567788999999999999999999999999998877654 7777888888765555544443332 245678888
Q ss_pred HHHHhhhhh--HHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccC-CHhHHHHHHHHHHHhccHHH
Q 002375 490 ERSLYNLGR--EKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYES 566 (929)
Q Consensus 490 ~~~l~~~~~--~Ai~~~~~al~l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~~g~~~e 566 (929)
+..+...++ +|+..|+++++.+|.++..+..++.++...|++++|...++++++..| ++..+..+|.+++..|++++
T Consensus 200 ~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (899)
T TIGR02917 200 GDLLLSLGNIELALAAYRKAIALRPNNPAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYED 279 (899)
T ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCHHH
Confidence 888887776 999999999999999999999999999999999999999999998877 66778888999999999999
Q ss_pred HHHHHHHHHhhcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhcccc----------------ccccccHHHHH
Q 002375 567 ALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSS----------------VDDIGSLAVIN 630 (929)
Q Consensus 567 A~~~~~~al~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~----------------~d~~~al~~~~ 630 (929)
|+..|+++++.+|++. .+...++.++...|++++|...++....... .+...++..+.
T Consensus 280 A~~~~~~~l~~~~~~~------~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 353 (899)
T TIGR02917 280 ARETLQDALKSAPEYL------PALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLS 353 (899)
T ss_pred HHHHHHHHHHhCCCch------hHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999999999887 6677788889999999998777643211110 11112255566
Q ss_pred HHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch-HH
Q 002375 631 QMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EA 709 (929)
Q Consensus 631 ~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~l~p~~-~a 709 (929)
+++..+|.++..+..+|.++...|++++|+..|+++++.+|+++..+..+|.++...|++++|+..++++++..|+. ..
T Consensus 354 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 433 (899)
T TIGR02917 354 PALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRA 433 (899)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhh
Confidence 77777777777777888888888888888888888888778777777788888888888888888888888777776 55
Q ss_pred HHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCc----hhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC--CChHHH
Q 002375 710 FFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLR----KGQALNNLGSIYVECGKLDQAENCYINALDI--KHTRAH 783 (929)
Q Consensus 710 ~~~l~~~l~~~~~~~~~~~~a~~~~~~Al~~~~~~l~----~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~--~~~~a~ 783 (929)
...++..+...+ .+++|+..+.+... ....+..+|.++...|++++|+..|+++++. ++..++
T Consensus 434 ~~~l~~~~~~~~-----------~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 502 (899)
T TIGR02917 434 DLLLILSYLRSG-----------QFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAA 502 (899)
T ss_pred HHHHHHHHHhcC-----------CHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHH
Confidence 566666655544 34444444333321 2345666666666666666666666666655 334455
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHh--------------------------------------hcCC
Q 002375 784 QGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS--------------------------------------EYSD 825 (929)
Q Consensus 784 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg--------------------------------------~~~~ 825 (929)
..+|.++...|++++|.+.+++++...|++..++..++ ..|+
T Consensus 503 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 582 (899)
T TIGR02917 503 ANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQ 582 (899)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCC
Confidence 55666666666666666666666555555554444433 2355
Q ss_pred HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHH-HHHHHHHHcCCHHHHHHHHHHHh
Q 002375 826 REMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLH-LRAAFYESIGDLTSAIRDSQAAL 904 (929)
Q Consensus 826 ~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~-~la~~~~~~g~~~~A~~~~~~al 904 (929)
+++|+..++++++..|.++..|..+|.++...|++++|+..|+++++..|+++..+ .+|.++...|++++|+..|++++
T Consensus 583 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 662 (899)
T TIGR02917 583 LKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRAL 662 (899)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 55555555555555666666666666666666666666666666666666554433 45666666666666666666666
Q ss_pred ccCCCCHHHHHHHHHHHhh
Q 002375 905 CLDPNHMETLDLYNRARDQ 923 (929)
Q Consensus 905 ~l~P~~~~a~~~~~~l~~~ 923 (929)
+.+|++..++..+..+...
T Consensus 663 ~~~~~~~~~~~~l~~~~~~ 681 (899)
T TIGR02917 663 ELKPDNTEAQIGLAQLLLA 681 (899)
T ss_pred hcCCCCHHHHHHHHHHHHH
Confidence 6666666666666555443
No 5
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=3.4e-31 Score=337.14 Aligned_cols=487 Identities=13% Similarity=0.036 Sum_probs=342.8
Q ss_pred Hhhhhhhhhc-ccchHHHHHHHHHhhcchHHHHHHHHHHHhhHHHHhcccHHHHHHHHHHHHhcCccccHH---------
Q 002375 386 FLSQVAMEKD-RVSNTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGHIYSLA--------- 455 (929)
Q Consensus 386 ~l~~~~~~~~-~~~~~~~~~Le~l~~~~~~~~~~a~~~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~~~a--------- 455 (929)
++.++.+-.. .+.+.+...|+++....++++ .++..++.+++..|++++|.+.++++++.+|.+..+
T Consensus 31 Ll~q~~~~~~~~~~d~a~~~l~kl~~~~p~~p---~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~ 107 (1157)
T PRK11447 31 LLEQVRLGEATHREDLVRQSLYRLELIDPNNP---DVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLL 107 (1157)
T ss_pred HHHHHHHHHhhCChHHHHHHHHHHHccCCCCH---HHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Confidence 3444444333 345667788888888877764 467788999999999999999999999999987653
Q ss_pred ---------HHHHHHHHhchHHHHHHHHHhhhcCCCcc---hhhhHHHHHh--hhhhHHHHHHHHHHhcCCCChHHHHHH
Q 002375 456 ---------GLARAKYKVGQQYSAYKLINSIISEHKPT---GWMYQERSLY--NLGREKIVDLNYASELDPTLSFPYKYR 521 (929)
Q Consensus 456 ---------~la~~~~~~g~a~~a~~~~~~l~~~~~~~---~~~~~~~~l~--~~~~~Ai~~~~~al~l~P~~~~a~~~~ 521 (929)
.+++.+...|+..++.......+....+. +..+...... ....+|+..|+++++.+|+++.+++.+
T Consensus 108 ~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~L 187 (1157)
T PRK11447 108 STPEGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTL 187 (1157)
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 23445666676555555555555443222 1222222222 223399999999999999999999999
Q ss_pred HHHHHHhCCHHHHHHHHHHHhcccCC------------------HhH---------------------------------
Q 002375 522 AVAKMEEGQIRAAISEIDRIIVFKLS------------------VDC--------------------------------- 550 (929)
Q Consensus 522 a~~~~~~g~~~~A~~~~~~al~~~~~------------------~~~--------------------------------- 550 (929)
|.++...|++++|+..+++++...+. +..
T Consensus 188 A~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~d 267 (1157)
T PRK11447 188 ALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLAD 267 (1157)
T ss_pred HHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccC
Confidence 99999999999999999988643210 000
Q ss_pred ----HHHHHHHHHHhccHHHHHHHHHHHHhhcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccH
Q 002375 551 ----LELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSL 626 (929)
Q Consensus 551 ----~~~~a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~d~~~al 626 (929)
...+|..+...|++++|+..|+++++.+|++. .++..+|.++...|++++|...+
T Consensus 268 p~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~------~a~~~Lg~~~~~~g~~~eA~~~l--------------- 326 (1157)
T PRK11447 268 PAFRARAQGLAAVDSGQGGKAIPELQQAVRANPKDS------EALGALGQAYSQQGDRARAVAQF--------------- 326 (1157)
T ss_pred cchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCHHHHHHHH---------------
Confidence 01336777889999999999999999999998 88889999999999999996666
Q ss_pred HHHHHHHhcCCCChH--------------HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHH
Q 002375 627 AVINQMLINDPGKSF--------------LRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREE 692 (929)
Q Consensus 627 ~~~~~al~~~p~~~~--------------~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~e 692 (929)
+++++.+|++.. ....+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++
T Consensus 327 ---~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~e 403 (1157)
T PRK11447 327 ---EKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAA 403 (1157)
T ss_pred ---HHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHH
Confidence 899999887653 223558889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccch-HHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCc-------------hhHHHHHHHHHH
Q 002375 693 ALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLR-------------KGQALNNLGSIY 758 (929)
Q Consensus 693 A~~~~~~al~l~p~~-~a~~~l~~~l~~~~~~~~~~~~a~~~~~~Al~~~~~~l~-------------~~~a~~~lg~~~ 758 (929)
|+..|+++++++|++ .++..++..+.... +++|+..+.+... ....+..+|.++
T Consensus 404 A~~~y~~aL~~~p~~~~a~~~L~~l~~~~~------------~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~ 471 (1157)
T PRK11447 404 AERYYQQALRMDPGNTNAVRGLANLYRQQS------------PEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEAL 471 (1157)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhcC------------HHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 999999999999999 78887777764321 2222222221110 012345566666
Q ss_pred HHcCCHHHHHHHHHHHHcC--CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHH------------------
Q 002375 759 VECGKLDQAENCYINALDI--KHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFE------------------ 818 (929)
Q Consensus 759 ~~~g~~~eA~~~~~~al~~--~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~------------------ 818 (929)
...|++++|+..|+++++. +++.+++.+|.+|...|++++|+..++++++..|+++.+++
T Consensus 472 ~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~ 551 (1157)
T PRK11447 472 ENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAH 551 (1157)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 6666666666666666666 33455666666666666666666666666666666554433
Q ss_pred --------------------------------------------------------HHh----hcCCHHHHHHHHHHHHh
Q 002375 819 --------------------------------------------------------KRS----EYSDREMAKNDLNMATQ 838 (929)
Q Consensus 819 --------------------------------------------------------~lg----~~~~~~~A~~~~~~al~ 838 (929)
.+| ..|++++|+..|+++++
T Consensus 552 l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~ 631 (1157)
T PRK11447 552 LNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLT 631 (1157)
T ss_pred HHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 233 33566666666666666
Q ss_pred cCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHH-HHHHHHHHcCCHHHHHHHHHHHhccCCCCH
Q 002375 839 LDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLH-LRAAFYESIGDLTSAIRDSQAALCLDPNHM 911 (929)
Q Consensus 839 l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~-~la~~~~~~g~~~~A~~~~~~al~l~P~~~ 911 (929)
.+|+++.++..+|.+|...|++++|++.++++++..|++...+ .+|.++...|++++|++.|++++...|+++
T Consensus 632 ~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~ 705 (1157)
T PRK11447 632 REPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQP 705 (1157)
T ss_pred hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCC
Confidence 6666666666666666666666666666666666666554443 446666666666666666666666555443
No 6
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=5.1e-30 Score=326.40 Aligned_cols=467 Identities=15% Similarity=0.065 Sum_probs=373.3
Q ss_pred cchHHHHHHHHHhhcchHHHHHHHHHHHhhHHHHhcccHHHHHHHHHHHHhcCccccHHHHHHHHHH-------hchHHH
Q 002375 397 VSNTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGHIYSLAGLARAKYK-------VGQQYS 469 (929)
Q Consensus 397 ~~~~~~~~Le~l~~~~~~~~~~a~~~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~~~a~la~~~~~-------~g~a~~ 469 (929)
..+.++..|+++....++. ..++..+|.+++..|++++|+..|+++++..+....+. ..+.. ......
T Consensus 162 ~~~~A~~~L~~ll~~~P~~---~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa--~~~~~~l~~~~~~~~~~~ 236 (1157)
T PRK11447 162 QRPEAINQLQRLNADYPGN---TGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAA--QLWYGQIKDMPVSDASVA 236 (1157)
T ss_pred cHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHH--HHHHHHHhccCCChhhHH
Confidence 4567888888887766554 34677899999999999999999999987644322111 11100 011111
Q ss_pred HHHHHHhhhcCC------------------Cc-chhhhHHHHHhhhhh--HHHHHHHHHHhcCCCChHHHHHHHHHHHHh
Q 002375 470 AYKLINSIISEH------------------KP-TGWMYQERSLYNLGR--EKIVDLNYASELDPTLSFPYKYRAVAKMEE 528 (929)
Q Consensus 470 a~~~~~~l~~~~------------------~~-~~~~~~~~~l~~~~~--~Ai~~~~~al~l~P~~~~a~~~~a~~~~~~ 528 (929)
.+.......++. .+ ......+..+...++ +|+..|+++++.+|+++.++..+|.++.+.
T Consensus 237 ~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~ 316 (1157)
T PRK11447 237 ALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQ 316 (1157)
T ss_pred HHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 222111111110 11 111234566666655 999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhcccCC-Hh--------------HHHHHHHHHHHhccHHHHHHHHHHHHhhcCCchhhhccccHHHH
Q 002375 529 GQIRAAISEIDRIIVFKLS-VD--------------CLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHL 593 (929)
Q Consensus 529 g~~~~A~~~~~~al~~~~~-~~--------------~~~~~a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~a~~l 593 (929)
|++++|+..|+++++..|+ +. .....|..+...|++++|+..|+++++.+|++. .++..
T Consensus 317 g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~------~a~~~ 390 (1157)
T PRK11447 317 GDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDS------YAVLG 390 (1157)
T ss_pred CCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH------HHHHH
Confidence 9999999999999988872 21 123457788899999999999999999999998 77888
Q ss_pred HHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHH-----------------------------
Q 002375 594 VKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRF----------------------------- 644 (929)
Q Consensus 594 l~~~~~~~~~~~~A~~~l~l~~~~~~~d~~~al~~~~~al~~~p~~~~~~~----------------------------- 644 (929)
++.++...|++++|+..+ +++++.+|++..++.
T Consensus 391 Lg~~~~~~g~~~eA~~~y------------------~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~ 452 (1157)
T PRK11447 391 LGDVAMARKDYAAAERYY------------------QQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSI 452 (1157)
T ss_pred HHHHHHHCCCHHHHHHHH------------------HHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHH
Confidence 999999999999997666 666666666555443
Q ss_pred -------------HHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch-HHH
Q 002375 645 -------------RQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAF 710 (929)
Q Consensus 645 -------------~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~l~p~~-~a~ 710 (929)
.+|..+...|++++|+..|+++++.+|+++.+++.+|.+|...|++++|+..++++++.+|++ +.+
T Consensus 453 ~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~ 532 (1157)
T PRK11447 453 DDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQV 532 (1157)
T ss_pred HHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Confidence 345556678999999999999999999999999999999999999999999999999999999 888
Q ss_pred HHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCch--------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 002375 711 FLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRK--------------GQALNNLGSIYVECGKLDQAENCYINALD 776 (929)
Q Consensus 711 ~~l~~~l~~~~~~~~~~~~a~~~~~~Al~~~~~~l~~--------------~~a~~~lg~~~~~~g~~~eA~~~~~~al~ 776 (929)
+.++..+...+ ++++|+..+.+.... ......++..+...|++++|+..++. .
T Consensus 533 ~a~al~l~~~~-----------~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~--~ 599 (1157)
T PRK11447 533 YAYGLYLSGSD-----------RDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ--Q 599 (1157)
T ss_pred HHHHHHHHhCC-----------CHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh--C
Confidence 88887776666 566666666554321 12345778899999999999999872 2
Q ss_pred CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHh----hcCCHHHHHHHHHHHHhcCCCCcHHHHHHHH
Q 002375 777 IKHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS----EYSDREMAKNDLNMATQLDPLRTYPYRYRAA 852 (929)
Q Consensus 777 ~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg----~~~~~~~A~~~~~~al~l~p~~~~~~~~la~ 852 (929)
-.++..+..+|.++...|++++|+..|+++++..|+++.++..++ ..|++++|+..++++++..|+++..+..+|.
T Consensus 600 p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~ 679 (1157)
T PRK11447 600 PPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVAL 679 (1157)
T ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 256678899999999999999999999999999999999999888 5799999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCchH------HH-HHHHHHHHcCCHHHHHHHHHHHhc
Q 002375 853 VLMDDQKEVEAVEELSKAIAFKPDLQM------LH-LRAAFYESIGDLTSAIRDSQAALC 905 (929)
Q Consensus 853 ~~~~~g~~~eA~~~l~kal~~~p~~~~------~~-~la~~~~~~g~~~~A~~~~~~al~ 905 (929)
++...|++++|++.|++++...|+.+. .+ .+|.++...|++++|+..|++|+.
T Consensus 680 ~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 680 AWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 999999999999999999998765532 22 459999999999999999999985
No 7
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=100.00 E-value=1.1e-29 Score=304.36 Aligned_cols=417 Identities=13% Similarity=0.068 Sum_probs=287.4
Q ss_pred HHHHHHHhhHHHHhcccHHHHHHHHHHHHhcCccccHHHHHHHHHHhchHHHHHHHHHhhhcCCCcchhhhHHHHHhhhh
Q 002375 418 RMLALHQLGCVMFEREEYKDACYYFEAAADAGHIYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNLG 497 (929)
Q Consensus 418 ~a~~~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~~~a~la~~~~~~g~a~~a~~~~~~l~~~~~~~~~~~~~~~l~~~~ 497 (929)
.+..+..+|+.++..|+|++|+..|+++++..|+. . .+.+.+.++...+ +.
T Consensus 126 ~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~-~-----~~~n~a~~~~~l~-----------------------~~ 176 (615)
T TIGR00990 126 YAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPDP-V-----YYSNRAACHNALG-----------------------DW 176 (615)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCch-H-----HHHHHHHHHHHhC-----------------------CH
Confidence 46678899999999999999999999999998862 2 2333333332222 44
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccCCHhHHHHHHHHHHHhccHHHHHHHHHHHHhh
Q 002375 498 REKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLAL 577 (929)
Q Consensus 498 ~~Ai~~~~~al~l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~al~~ 577 (929)
++|+..++++++++|++..+|+.+|.++..+|++++|+..|..+....+....... ..+ ...-...+......+++.
T Consensus 177 ~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~--~~~-~~~l~~~a~~~~~~~l~~ 253 (615)
T TIGR00990 177 EKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSA--QAV-ERLLKKFAESKAKEILET 253 (615)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHH--HHH-HHHHHHHHHHHHHHHHhc
Confidence 58999999999999999999999999999999999999999888755542111111 111 111113445556666666
Q ss_pred cCCchhhhccccHHHHHHHHHHhhcccchHHHHH---------------Hhhhcc----ccccccccHHHHHHHHhc---
Q 002375 578 ESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWI---------------KLYDRW----SSVDDIGSLAVINQMLIN--- 635 (929)
Q Consensus 578 ~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l---------------~l~~~~----~~~d~~~al~~~~~al~~--- 635 (929)
.|.+. .....++..+... ....+...+ .++... .......++..|++++..
T Consensus 254 ~~~~~------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~ 326 (615)
T TIGR00990 254 KPENL------PSVTFVGNYLQSF-RPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKL 326 (615)
T ss_pred CCCCC------CCHHHHHHHHHHc-cCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCC
Confidence 66655 2222233222110 000000000 000000 000000113333445443
Q ss_pred CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHH
Q 002375 636 DPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAY 715 (929)
Q Consensus 636 ~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~l~p~~~a~~~l~~ 715 (929)
.|..+.++..+|.++..+|++++|+..|+++++.+|+....+..+|.++...|++++|+..|+++++.+|++
T Consensus 327 ~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~-------- 398 (615)
T TIGR00990 327 GEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSED-------- 398 (615)
T ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC--------
Confidence 244455555555555555555555555555555555555555555555555555555555555555555544
Q ss_pred HHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC--CChHHHHHHHHHHHHh
Q 002375 716 ILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI--KHTRAHQGLARVYYLK 793 (929)
Q Consensus 716 ~l~~~~~~~~~~~~a~~~~~~Al~~~~~~l~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~--~~~~a~~~la~~~~~~ 793 (929)
..+++.+|.++...|++++|+.+|++++++ ++..++..+|.++...
T Consensus 399 --------------------------------~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~ 446 (615)
T TIGR00990 399 --------------------------------PDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKE 446 (615)
T ss_pred --------------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHC
Confidence 567889999999999999999999999999 4567889999999999
Q ss_pred CCHHHHHHHHHHHHHHccCCHHHHHHHh----hcCCHHHHHHHHHHHHhcCCCCcHH------HHHHHHHH-HhcCCHHH
Q 002375 794 NELKAAYDEMTKLLEKAQYSASAFEKRS----EYSDREMAKNDLNMATQLDPLRTYP------YRYRAAVL-MDDQKEVE 862 (929)
Q Consensus 794 g~~~~A~~~~~~al~~~p~~~~~~~~lg----~~~~~~~A~~~~~~al~l~p~~~~~------~~~la~~~-~~~g~~~e 862 (929)
|++++|+..+++++...|+++.++..+| ..|++++|+..|++++.++|..... +...+.++ ...|++++
T Consensus 447 g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~e 526 (615)
T TIGR00990 447 GSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIE 526 (615)
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHH
Confidence 9999999999999999999999998888 6799999999999999999864332 23333334 34699999
Q ss_pred HHHHHHHHHhcCCCchHHH-HHHHHHHHcCCHHHHHHHHHHHhccCCCCHHH
Q 002375 863 AVEELSKAIAFKPDLQMLH-LRAAFYESIGDLTSAIRDSQAALCLDPNHMET 913 (929)
Q Consensus 863 A~~~l~kal~~~p~~~~~~-~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a 913 (929)
|+..++++++++|++...+ .+|.++..+|++++|+..|++++++.+...+.
T Consensus 527 A~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e~ 578 (615)
T TIGR00990 527 AENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGEL 578 (615)
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHHH
Confidence 9999999999999887655 67999999999999999999999999876554
No 8
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.97 E-value=7.7e-27 Score=283.88 Aligned_cols=503 Identities=12% Similarity=-0.047 Sum_probs=335.7
Q ss_pred ccchHHHHHHHHHhhcchHHHHHHHHHHHhhHHHHhcccHHHHHHHHHHHHhcCccccHHHHH-HHHHHhchHHHHHHHH
Q 002375 396 RVSNTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGHIYSLAGLA-RAKYKVGQQYSAYKLI 474 (929)
Q Consensus 396 ~~~~~~~~~Le~l~~~~~~~~~~a~~~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~~~a~la-~~~~~~g~a~~a~~~~ 474 (929)
.+.+.++..++++.+..|++ ..+++.++..|+..|++++|+..++++++.+|.+....+. ....+..++...++++
T Consensus 58 Gd~~~A~~~l~~Al~~dP~n---~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i~~~~kA~~~ye~l 134 (987)
T PRK09782 58 NDEATAIREFEYIHQQVPDN---IPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAIPVEVKSVTTVEEL 134 (987)
T ss_pred CCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHhccChhHHHHHHHH
Confidence 34456667777776666655 4566778888888888888888888888887766655221 1123344466667766
Q ss_pred HhhhcCCCcchhhhHHHH------H-hhhhhHHHHHHH-HHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccC
Q 002375 475 NSIISEHKPTGWMYQERS------L-YNLGREKIVDLN-YASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL 546 (929)
Q Consensus 475 ~~l~~~~~~~~~~~~~~~------l-~~~~~~Ai~~~~-~al~l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~ 546 (929)
....|+ +.......+.. + |...++|.+.++ +.+..+|......+.++.+|..+|+|++|+..+.++++.++
T Consensus 135 ~~~~P~-n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~p 213 (987)
T PRK09782 135 LAQQKA-CDAVPTLRCRSEVGQNALRLAQLPVARAQLNDATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNT 213 (987)
T ss_pred HHhCCC-ChhHHHHHHHHhhccchhhhhhHHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCC
Confidence 666666 44444444444 1 334444444443 22222223344555557777777777777777777776666
Q ss_pred -CHhHHHHHHHHHHH-hccHHHHHHHHHHHHhhcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhcccc-----
Q 002375 547 -SVDCLELRAWLFIA-ADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSS----- 619 (929)
Q Consensus 547 -~~~~~~~~a~~~~~-~g~~~eA~~~~~~al~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~----- 619 (929)
+.+....++.+|.. +++ ++|+..++..++ +++ .+...++..+...|+.++|..+++......-
T Consensus 214 l~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk---~d~------~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~ 283 (987)
T PRK09782 214 LSAAERRQWFDVLLAGQLD-DRLLALQSQGIF---TDP------QSRITYATALAYRGEKARLQHYLIENKPLFTTDAQE 283 (987)
T ss_pred CCHHHHHHHHHHHHHhhCH-HHHHHHhchhcc---cCH------HHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCcc
Confidence 44445556666655 355 555555443222 222 3334455555555555555544433110000
Q ss_pred ------------------------------------------------------------------------ccccccHH
Q 002375 620 ------------------------------------------------------------------------VDDIGSLA 627 (929)
Q Consensus 620 ------------------------------------------------------------------------~d~~~al~ 627 (929)
.....+..
T Consensus 284 ~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 363 (987)
T PRK09782 284 KSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALR 363 (987)
T ss_pred HHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHH
Confidence 00000011
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHh---------------------------------------
Q 002375 628 VINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARN--------------------------------------- 668 (929)
Q Consensus 628 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~--------------------------------------- 668 (929)
......+..|.+.......+......|++++|...|+.+..
T Consensus 364 ~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 443 (987)
T PRK09782 364 LARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLP 443 (987)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccc
Confidence 12222233355555555566666666666666655555443
Q ss_pred --------------------------cCCc--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Q 002375 669 --------------------------HSSS--EHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADT 720 (929)
Q Consensus 669 --------------------------~~p~--~~~~~~~lg~~~~~~g~~~eA~~~~~~al~l~p~~~a~~~l~~~l~~~ 720 (929)
..|. ++.+++.+|.++.. +++++|+..+.+++...|+......++..+...
T Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~ 522 (987)
T PRK09782 444 LAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQV 522 (987)
T ss_pred cchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 2344 56666777777776 677777777777777777664344455555555
Q ss_pred CCCCCChHHHHHHHHHHhhchhccCc---hhHHHHHHHHHHHHcCCHHHHHHHHHHHHcCC--ChHHHHHHHHHHHHhCC
Q 002375 721 NLDPESSTYVIQLLEEALRCPSDGLR---KGQALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNE 795 (929)
Q Consensus 721 ~~~~~~~~~a~~~~~~Al~~~~~~l~---~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~--~~~a~~~la~~~~~~g~ 795 (929)
+ ++++|+..++++.. ....+..+|.++...|++++|+.+|+++++.. ....+..++......|+
T Consensus 523 G-----------r~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr 591 (987)
T PRK09782 523 E-----------DYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQ 591 (987)
T ss_pred C-----------CHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCC
Confidence 5 67777777776643 13567888999999999999999999999884 33445555556666799
Q ss_pred HHHHHHHHHHHHHHccCCHHHHHHHh----hcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002375 796 LKAAYDEMTKLLEKAQYSASAFEKRS----EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAI 871 (929)
Q Consensus 796 ~~~A~~~~~~al~~~p~~~~~~~~lg----~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal 871 (929)
+++|+..++++++.+|+ ..++..+| ..|++++|+..|++++.++|+++.++.++|.++...|++++|++.|++++
T Consensus 592 ~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL 670 (987)
T PRK09782 592 PELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAH 670 (987)
T ss_pred HHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999999999999996 88888888 67999999999999999999999999999999999999999999999999
Q ss_pred hcCCCchHHH-HHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHhhhh
Q 002375 872 AFKPDLQMLH-LRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNRARDQAS 925 (929)
Q Consensus 872 ~~~p~~~~~~-~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~l~~~~~ 925 (929)
+.+|+++.++ .+|.++..+|++++|+..|+++++++|++..+..-++.+.....
T Consensus 671 ~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~ 725 (987)
T PRK09782 671 KGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRF 725 (987)
T ss_pred HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHH
Confidence 9999987665 78999999999999999999999999999888877777765554
No 9
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.97 E-value=1.2e-27 Score=286.54 Aligned_cols=391 Identities=18% Similarity=0.138 Sum_probs=305.2
Q ss_pred HHHHHhhhhh--HHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccC-CHhHHHHHHHHHHHhccHH
Q 002375 489 QERSLYNLGR--EKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYE 565 (929)
Q Consensus 489 ~~~~l~~~~~--~Ai~~~~~al~l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~~g~~~ 565 (929)
.|..++..++ +|+..|+++++++|+ +..|.++|.+|...|++++|+..++++++++| .+.++..+|.++..+|+++
T Consensus 133 ~G~~~~~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~ 211 (615)
T TIGR00990 133 KGNKAYRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYA 211 (615)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHH
Confidence 4555555555 999999999999996 77899999999999999999999999999988 7788999999999999999
Q ss_pred HHHHHHHHHHhhcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhc-----------cccccccccHHHHHHHHh
Q 002375 566 SALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDR-----------WSSVDDIGSLAVINQMLI 634 (929)
Q Consensus 566 eA~~~~~~al~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~-----------~~~~d~~~al~~~~~al~ 634 (929)
+|+..|..+...++.+..... ..+...... .....+...++.... ............+....+
T Consensus 212 eA~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~-~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (615)
T TIGR00990 212 DALLDLTASCIIDGFRNEQSA-----QAVERLLKK-FAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNE 285 (615)
T ss_pred HHHHHHHHHHHhCCCccHHHH-----HHHHHHHHH-HHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccc
Confidence 999999888777654441100 001111000 000111111110000 000000001112233334
Q ss_pred cCCCChHHHHHHHHHHH---HhcCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchH
Q 002375 635 NDPGKSFLRFRQSLLLL---RLNCQKAAMRCLRLARNH---SSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFE 708 (929)
Q Consensus 635 ~~p~~~~~~~~lg~~~~---~~g~~~~A~~~l~~al~~---~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~l~p~~~ 708 (929)
.+|.....+..++..+. ..+++++|+..|+++++. .|....++..+|.++...|++++|+..|++++.++|++
T Consensus 286 ~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~- 364 (615)
T TIGR00990 286 LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRV- 364 (615)
T ss_pred cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc-
Confidence 45555555555555443 347899999999999976 47778889999999999999999999999999999877
Q ss_pred HHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC--CChHHHHHH
Q 002375 709 AFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI--KHTRAHQGL 786 (929)
Q Consensus 709 a~~~l~~~l~~~~~~~~~~~~a~~~~~~Al~~~~~~l~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~--~~~~a~~~l 786 (929)
..++..+|.++...|++++|+..|+++++. +++.+++.+
T Consensus 365 ---------------------------------------~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l 405 (615)
T TIGR00990 365 ---------------------------------------TQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHR 405 (615)
T ss_pred ---------------------------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 455888999999999999999999999998 567899999
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHh----hcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHH
Q 002375 787 ARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS----EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVE 862 (929)
Q Consensus 787 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg----~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~e 862 (929)
|.++...|++++|+..|+++++.+|++..++..+| ..|++++|+..|+++++..|.++.++..+|.++...|++++
T Consensus 406 g~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~ 485 (615)
T TIGR00990 406 AQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDE 485 (615)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHH
Confidence 99999999999999999999999999999999988 67999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCchHH-------HHH-HHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHhhhhh
Q 002375 863 AVEELSKAIAFKPDLQML-------HLR-AAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNRARDQASH 926 (929)
Q Consensus 863 A~~~l~kal~~~p~~~~~-------~~l-a~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~l~~~~~~ 926 (929)
|+..|++++++.|+.... ... +..+...|++++|+..|+++++++|++..++..++++....++
T Consensus 486 A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~ 557 (615)
T TIGR00990 486 AIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGD 557 (615)
T ss_pred HHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccC
Confidence 999999999999875321 122 3344457999999999999999999999988888887655443
No 10
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.97 E-value=9.2e-27 Score=263.55 Aligned_cols=464 Identities=15% Similarity=0.109 Sum_probs=392.4
Q ss_pred HHHHHHHHHHHHhcCccccHH--HHHHHHHHhch---HHHHHHHHHhhhcCCCcchhhhHHHHHhhhhh--HHHHHHHHH
Q 002375 435 YKDACYYFEAAADAGHIYSLA--GLARAKYKVGQ---QYSAYKLINSIISEHKPTGWMYQERSLYNLGR--EKIVDLNYA 507 (929)
Q Consensus 435 y~~A~~~f~~al~~~~~~~~a--~la~~~~~~g~---a~~a~~~~~~l~~~~~~~~~~~~~~~l~~~~~--~Ai~~~~~a 507 (929)
++.|...|..+++..|.+.++ |-|++.+++++ +...|..+....|...++..+..|.+++..+. .|+..|.+|
T Consensus 146 ~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ra 225 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERA 225 (1018)
T ss_pred HHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHH
Confidence 589999999999999998887 56666677666 44456666666677677888888888777666 899999999
Q ss_pred HhcCCCChHHHHHHHHHHHHhCC---HHHHHHHHHHHhcccC-CHhHHHHHHHHHHHhccHHHHHHHHHHHHhhcCCchh
Q 002375 508 SELDPTLSFPYKYRAVAKMEEGQ---IRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLALLALESNYMM 583 (929)
Q Consensus 508 l~l~P~~~~a~~~~a~~~~~~g~---~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~~g~~~eA~~~~~~al~~~p~~~~ 583 (929)
+++||+++.++..+|.+-....+ +..++..+.++...++ +|..+..++..++..|+|..+......++...-...
T Consensus 226 lqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~- 304 (1018)
T KOG2002|consen 226 LQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKS- 304 (1018)
T ss_pred HhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhH-
Confidence 99999999999999988766554 6789999999998888 999999999999999999999999999988653333
Q ss_pred hhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCC-hHHHHHHHHHHHHhcCHHHHHHH
Q 002375 584 FHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGK-SFLRFRQSLLLLRLNCQKAAMRC 662 (929)
Q Consensus 584 ~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~d~~~al~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~ 662 (929)
. ..+..+.+|..+...|++++|..++ .+++..+|++ ...++.+|..|...|+++.|..+
T Consensus 305 ~--~aes~Y~~gRs~Ha~Gd~ekA~~yY------------------~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~ 364 (1018)
T KOG2002|consen 305 I--KAESFYQLGRSYHAQGDFEKAFKYY------------------MESLKADNDNFVLPLVGLGQMYIKRGDLEESKFC 364 (1018)
T ss_pred H--HHHHHHHHHHHHHhhccHHHHHHHH------------------HHHHccCCCCccccccchhHHHHHhchHHHHHHH
Confidence 1 1267889999999999999996665 8999999988 77899999999999999999999
Q ss_pred HHHHHhcCCchHHHHHHHHHHHHHcC----CHHHHHHHHHHHHhhccch-HHHHHHHHHHHhcCCCCCChHHHHHHHHHH
Q 002375 663 LRLARNHSSSEHERLVYEGWILYDTG----HREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEA 737 (929)
Q Consensus 663 l~~al~~~p~~~~~~~~lg~~~~~~g----~~~eA~~~~~~al~l~p~~-~a~~~l~~~l~~~~~~~~~~~~a~~~~~~A 737 (929)
|+++++..|++.+....+|.+|...+ ..++|..+..++++..|.+ ++|..++..+.... ....+..|..|
T Consensus 365 fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d-----~~~sL~~~~~A 439 (1018)
T KOG2002|consen 365 FEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTD-----PWASLDAYGNA 439 (1018)
T ss_pred HHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcC-----hHHHHHHHHHH
Confidence 99999999999999999999999886 6789999999999999999 99999999987654 33446677788
Q ss_pred hhchhccCc--hhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC-----CChH-------HHHHHHHHHHHhCCHHHHHHHH
Q 002375 738 LRCPSDGLR--KGQALNNLGSIYVECGKLDQAENCYINALDI-----KHTR-------AHQGLARVYYLKNELKAAYDEM 803 (929)
Q Consensus 738 l~~~~~~l~--~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~-----~~~~-------a~~~la~~~~~~g~~~~A~~~~ 803 (929)
+..+...-. |.+.++++|..++..|++..|...|.+|+.. ++.. ..+++|+++...++++.|.+.|
T Consensus 440 ~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Y 519 (1018)
T KOG2002|consen 440 LDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMY 519 (1018)
T ss_pred HHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHH
Confidence 876665533 5799999999999999999999999999877 1112 4899999999999999999999
Q ss_pred HHHHHHccCCHHHHHHHh----hcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCch-
Q 002375 804 TKLLEKAQYSASAFEKRS----EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQ- 878 (929)
Q Consensus 804 ~~al~~~p~~~~~~~~lg----~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~- 878 (929)
..++..+|...++|..+| ..++..+|...+..++..+..++.++..+|..++...++..|.+-|+.+++.....+
T Consensus 520 k~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D 599 (1018)
T KOG2002|consen 520 KSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTD 599 (1018)
T ss_pred HHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCc
Confidence 999999999999999998 347889999999999999999999999999999999999999998888776544332
Q ss_pred --HHHHHHHHHHH------------cCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHhhh
Q 002375 879 --MLHLRAAFYES------------IGDLTSAIRDSQAALCLDPNHMETLDLYNRARDQA 924 (929)
Q Consensus 879 --~~~~la~~~~~------------~g~~~~A~~~~~~al~l~P~~~~a~~~~~~l~~~~ 924 (929)
....+|.++.+ .+.+++|++.|.++|+.+|.|.-+.+.++.+....
T Consensus 600 ~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~k 659 (1018)
T KOG2002|consen 600 AYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEK 659 (1018)
T ss_pred hhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhc
Confidence 23355776664 35678999999999999999988887777765443
No 11
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.97 E-value=3.1e-27 Score=267.28 Aligned_cols=489 Identities=15% Similarity=0.099 Sum_probs=325.1
Q ss_pred HHHHHhhHHHHhcccHHHHHHHHHHHHhcCccccH---HHHHHHHHHhch---HHHHHHHHHhhhcC-------------
Q 002375 420 LALHQLGCVMFEREEYKDACYYFEAAADAGHIYSL---AGLARAKYKVGQ---QYSAYKLINSIISE------------- 480 (929)
Q Consensus 420 ~~~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~~~---a~la~~~~~~g~---a~~a~~~~~~l~~~------------- 480 (929)
.++...+++.+.+|+|..|+.+|.+++.++|.... .++..+..+.+. +..++.++.++.|.
T Consensus 165 l~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l 244 (1018)
T KOG2002|consen 165 LALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDL 244 (1018)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHH
Confidence 34445555566666666666666666665443221 133444333332 44445555444442
Q ss_pred -----------------------CCcchhhhHHHHHhhhhh--HHHHHHHHHHhcC---CCChHHHHHHHHHHHHhCCHH
Q 002375 481 -----------------------HKPTGWMYQERSLYNLGR--EKIVDLNYASELD---PTLSFPYKYRAVAKMEEGQIR 532 (929)
Q Consensus 481 -----------------------~~~~~~~~~~~~l~~~~~--~Ai~~~~~al~l~---P~~~~a~~~~a~~~~~~g~~~ 532 (929)
.+|...+..+.-+|..++ .+......++... +..+..+|.+|.+|..+|+|+
T Consensus 245 ~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~e 324 (1018)
T KOG2002|consen 245 NFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFE 324 (1018)
T ss_pred HccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHH
Confidence 133344444444443333 3333333333322 222334566666666666666
Q ss_pred HHHHHHHHHhcccCC--HhHHHHHHHHHHHhccHHHHHHHHHHHHhhcCCchhhhccccHHHHHHHHHHhhc----ccch
Q 002375 533 AAISEIDRIIVFKLS--VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVR----SWSP 606 (929)
Q Consensus 533 ~A~~~~~~al~~~~~--~~~~~~~a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~a~~ll~~~~~~~~----~~~~ 606 (929)
+|..+|.++++.+++ .-.++.+|+.|+..|+++.|+..|+++++..|++. ....++|.+|...+ ..++
T Consensus 325 kA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~------etm~iLG~Lya~~~~~~~~~d~ 398 (1018)
T KOG2002|consen 325 KAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNY------ETMKILGCLYAHSAKKQEKRDK 398 (1018)
T ss_pred HHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchH------HHHHHHHhHHHhhhhhhHHHHH
Confidence 666666666655542 22355566666666666666666666666666666 66666777775543 2222
Q ss_pred HH---------------HHHHhhhccccccccccHHHHHHHHhc-----CCCChHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 002375 607 AD---------------CWIKLYDRWSSVDDIGSLAVINQMLIN-----DPGKSFLRFRQSLLLLRLNCQKAAMRCLRLA 666 (929)
Q Consensus 607 A~---------------~~l~l~~~~~~~d~~~al~~~~~al~~-----~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~a 666 (929)
|. .|+.+...|...+...++..|..++.. .+--+..+.++|..++.+|++.+|...|..|
T Consensus 399 a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A 478 (1018)
T KOG2002|consen 399 ASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSA 478 (1018)
T ss_pred HHHHHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHH
Confidence 22 233333333334444446666666632 2334566777777777888888888888777
Q ss_pred Hhc-----CCch-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch-HHHHHHHHHHHhcCCCCCChHHHHHHHH
Q 002375 667 RNH-----SSSE-----HERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLE 735 (929)
Q Consensus 667 l~~-----~p~~-----~~~~~~lg~~~~~~g~~~eA~~~~~~al~l~p~~-~a~~~l~~~l~~~~~~~~~~~~a~~~~~ 735 (929)
+.. +++. ....+++|.++...++++.|...|..+++..|++ +++..++......+ ...
T Consensus 479 ~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~-----------~~~ 547 (1018)
T KOG2002|consen 479 LGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKN-----------NLY 547 (1018)
T ss_pred hhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhcc-----------CcH
Confidence 655 1221 2246777888888888888888888888888877 77776663333333 344
Q ss_pred HHhhchhccCc----hhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC----CChHHHHHHHHHHHH------------hCC
Q 002375 736 EALRCPSDGLR----KGQALNNLGSIYVECGKLDQAENCYINALDI----KHTRAHQGLARVYYL------------KNE 795 (929)
Q Consensus 736 ~Al~~~~~~l~----~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~----~~~~a~~~la~~~~~------------~g~ 795 (929)
+|...+..+++ .+.++..+|..+....++..|.+-|+..++. .++.+...||++++. .+.
T Consensus 548 ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~ 627 (1018)
T KOG2002|consen 548 EASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKH 627 (1018)
T ss_pred HHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHH
Confidence 55555555543 2478888999999999998888877777665 355678888887764 345
Q ss_pred HHHHHHHHHHHHHHccCCHHHHHHHh----hcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002375 796 LKAAYDEMTKLLEKAQYSASAFEKRS----EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAI 871 (929)
Q Consensus 796 ~~~A~~~~~~al~~~p~~~~~~~~lg----~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal 871 (929)
++.|++.|.+++..+|.|..+-..+| ..|++.+|+..|.++.+-..++..+|.++|.+|+.+|+|..|++.|+.++
T Consensus 628 ~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~l 707 (1018)
T KOG2002|consen 628 QEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCL 707 (1018)
T ss_pred HHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHH
Confidence 77899999999999999988777766 67999999999999998888899999999999999999999999999999
Q ss_pred hcCC---CchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHhhhh
Q 002375 872 AFKP---DLQMLHLRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNRARDQAS 925 (929)
Q Consensus 872 ~~~p---~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~l~~~~~ 925 (929)
+..- +....+.+|.++...|.+.+|.+...+|+.+.|.++....+++-+..+..
T Consensus 708 kkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla 764 (1018)
T KOG2002|consen 708 KKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLA 764 (1018)
T ss_pred HHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHH
Confidence 7644 33566788999999999999999999999999999999999888776554
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.96 E-value=5.7e-25 Score=267.61 Aligned_cols=499 Identities=11% Similarity=-0.001 Sum_probs=359.6
Q ss_pred HHHHHHHhhHHHHhcccHHHHHHHHHHHHhcCccccHH--HHHHHHHHhchHHHHHHHHHhhhcCCCcchhhhHHHHHhh
Q 002375 418 RMLALHQLGCVMFEREEYKDACYYFEAAADAGHIYSLA--GLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYN 495 (929)
Q Consensus 418 ~a~~~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~~~a--~la~~~~~~g~a~~a~~~~~~l~~~~~~~~~~~~~~~l~~ 495 (929)
....+|..|..+...|++++|+..|+++++++|.+..+ .+++.|...|+...+...+.+.+...+...|++.....+.
T Consensus 43 ~~~~~f~~a~~~~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i~ 122 (987)
T PRK09782 43 VIYPRLDKALKAQKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAIP 122 (987)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHhc
Confidence 45567788888889999999999999999999999655 7889999999877777666666665555677766656666
Q ss_pred hhhHHHHHHHHHHhcCCCChHHHHHHHHH--------HHHhCCHHHHHHHHHHHhcccCCHhH-HHHHHHHHHHhccHHH
Q 002375 496 LGREKIVDLNYASELDPTLSFPYKYRAVA--------KMEEGQIRAAISEIDRIIVFKLSVDC-LELRAWLFIAADDYES 566 (929)
Q Consensus 496 ~~~~Ai~~~~~al~l~P~~~~a~~~~a~~--------~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~a~~~~~~g~~~e 566 (929)
...+|+..|++.++++|++..+++.++.. |.+.++..+|+. .+.+..++.+.. ...++.+|..+|++++
T Consensus 123 ~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~ 200 (987)
T PRK09782 123 VEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQ 200 (987)
T ss_pred cChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHH
Confidence 67799999999999999999999999998 777777777776 555544434444 4555999999999999
Q ss_pred HHHHHHHHHhhcCCchhhhccccHHHHHHHHHHh-hcccchHHHHHHh---------------hhcccccccccc-HHHH
Q 002375 567 ALRDTLALLALESNYMMFHGRVSGDHLVKLLNHH-VRSWSPADCWIKL---------------YDRWSSVDDIGS-LAVI 629 (929)
Q Consensus 567 A~~~~~~al~~~p~~~~~~~~~~a~~ll~~~~~~-~~~~~~A~~~l~l---------------~~~~~~~d~~~a-l~~~ 629 (929)
|+..+.++++..|.+. .....++.+|.. +++ +.+..+.+- +......+.... +..+
T Consensus 201 Ai~lL~~L~k~~pl~~------~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~ 273 (987)
T PRK09782 201 ADTLYNEARQQNTLSA------AERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIEN 273 (987)
T ss_pred HHHHHHHHHhcCCCCH------HHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 9999999999999988 555566667766 344 444333210 000000000000 0000
Q ss_pred HHHHhcCCCChHHHHHH-----------------------------HHHHHHh---------------------------
Q 002375 630 NQMLINDPGKSFLRFRQ-----------------------------SLLLLRL--------------------------- 653 (929)
Q Consensus 630 ~~al~~~p~~~~~~~~l-----------------------------g~~~~~~--------------------------- 653 (929)
......+|.+...++.+ ...+...
T Consensus 274 ~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 353 (987)
T PRK09782 274 KPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSV 353 (987)
T ss_pred cccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhcc
Confidence 11111112222211111 1222222
Q ss_pred --cCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch---H-HHHHHHHHHHhcCC-----
Q 002375 654 --NCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF---E-AFFLKAYILADTNL----- 722 (929)
Q Consensus 654 --g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~l~p~~---~-a~~~l~~~l~~~~~----- 722 (929)
+.+.+|...++...+..|.+...+..++....+.|++++|...|++++...++- . ....++..+.....
T Consensus 354 ~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 433 (987)
T PRK09782 354 ATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPA 433 (987)
T ss_pred ccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchH
Confidence 444455555555566668888999999999999999999999999998853322 1 22244444443321
Q ss_pred -------------------------------------CCC--ChH--HH------HHHHHHHhhchhccCc--hh-HHHH
Q 002375 723 -------------------------------------DPE--SST--YV------IQLLEEALRCPSDGLR--KG-QALN 752 (929)
Q Consensus 723 -------------------------------------~~~--~~~--~a------~~~~~~Al~~~~~~l~--~~-~a~~ 752 (929)
.+. ... .. .+..++|+..+.+++. |. ....
T Consensus 434 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~~~~~eAi~a~~~Al~~~Pd~~~~L 513 (987)
T PRK09782 434 KVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRDTLPGVALYAWLQAEQRQPDAWQHR 513 (987)
T ss_pred HHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHhCCcHHHHHHHHHHHHhCCchHHHH
Confidence 000 000 00 0112234444444322 21 2334
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHcC-CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHh-hc---CCHH
Q 002375 753 NLGSIYVECGKLDQAENCYINALDI-KHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS-EY---SDRE 827 (929)
Q Consensus 753 ~lg~~~~~~g~~~eA~~~~~~al~~-~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg-~~---~~~~ 827 (929)
.+|.++...|++++|+..|++++.. .....+..+|.++...|++++|...++++++..|++...+..++ .. |+++
T Consensus 514 ~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~ 593 (987)
T PRK09782 514 AVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPE 593 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHH
Confidence 4566667899999999999998776 34456888999999999999999999999999999887776665 44 9999
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHH-HHHHHHHHcCCHHHHHHHHHHHhcc
Q 002375 828 MAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLH-LRAAFYESIGDLTSAIRDSQAALCL 906 (929)
Q Consensus 828 ~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~-~la~~~~~~g~~~~A~~~~~~al~l 906 (929)
+|+..|+++++++|+ +.++.++|.++.+.|++++|+..|+++++++|+++.++ .+|.++...|++++|+..|++++++
T Consensus 594 eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l 672 (987)
T PRK09782 594 LALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKG 672 (987)
T ss_pred HHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 999999999999996 99999999999999999999999999999999998776 7799999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhhhhh
Q 002375 907 DPNHMETLDLYNRARDQASH 926 (929)
Q Consensus 907 ~P~~~~a~~~~~~l~~~~~~ 926 (929)
+|++++++..++.+....++
T Consensus 673 ~P~~~~a~~nLA~al~~lGd 692 (987)
T PRK09782 673 LPDDPALIRQLAYVNQRLDD 692 (987)
T ss_pred CCCCHHHHHHHHHHHHHCCC
Confidence 99999999999988766554
No 13
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.95 E-value=3.2e-25 Score=264.82 Aligned_cols=328 Identities=13% Similarity=0.049 Sum_probs=181.6
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHhcccC-CHhHHHHHHHHHHHhccHHHHHHHHHHHHhhcCCchhhhccccHHHHHHHH
Q 002375 519 KYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLL 597 (929)
Q Consensus 519 ~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~a~~ll~~~ 597 (929)
...+..+.+.|++++|...++.++...| +++.+..+|.+....|++++|+..|+++++.+|+++ .++..++.+
T Consensus 46 ~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~------~a~~~la~~ 119 (656)
T PRK15174 46 ILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQP------EDVLLVASV 119 (656)
T ss_pred HHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCCh------HHHHHHHHH
Confidence 3334445555555555555555555555 444555555555555555555555555555555555 444555555
Q ss_pred HHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHH
Q 002375 598 NHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERL 677 (929)
Q Consensus 598 ~~~~~~~~~A~~~l~l~~~~~~~d~~~al~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~ 677 (929)
+...|++++|...+ .++++.+|+++.++..++.++...|++++|+..+++++...|+++..+
T Consensus 120 l~~~g~~~~Ai~~l------------------~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~ 181 (656)
T PRK15174 120 LLKSKQYATVADLA------------------EQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMI 181 (656)
T ss_pred HHHcCCHHHHHHHH------------------HHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHH
Confidence 55555555553333 555555555555555555555555555555555555555555555544
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHH
Q 002375 678 VYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSI 757 (929)
Q Consensus 678 ~~lg~~~~~~g~~~eA~~~~~~al~l~p~~~a~~~l~~~l~~~~~~~~~~~~a~~~~~~Al~~~~~~l~~~~a~~~lg~~ 757 (929)
..++ .+...|++++|+..+++++..+|.. .......++.+
T Consensus 182 ~~~~-~l~~~g~~~eA~~~~~~~l~~~~~~---------------------------------------~~~~~~~l~~~ 221 (656)
T PRK15174 182 ATCL-SFLNKSRLPEDHDLARALLPFFALE---------------------------------------RQESAGLAVDT 221 (656)
T ss_pred HHHH-HHHHcCCHHHHHHHHHHHHhcCCCc---------------------------------------chhHHHHHHHH
Confidence 4432 2455555555555555555544321 00112233445
Q ss_pred HHHcCCHHHHHHHHHHHHcC--CChHHHHHHHHHHHHhCCHHH----HHHHHHHHHHHccCCHHHHHHHh----hcCCHH
Q 002375 758 YVECGKLDQAENCYINALDI--KHTRAHQGLARVYYLKNELKA----AYDEMTKLLEKAQYSASAFEKRS----EYSDRE 827 (929)
Q Consensus 758 ~~~~g~~~eA~~~~~~al~~--~~~~a~~~la~~~~~~g~~~~----A~~~~~~al~~~p~~~~~~~~lg----~~~~~~ 827 (929)
+...|++++|+..|+++++. +++.++..+|.++...|++++ |...++++++.+|++..++..+| ..|+++
T Consensus 222 l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~ 301 (656)
T PRK15174 222 LCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNE 301 (656)
T ss_pred HHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHH
Confidence 55556666666666666655 334555566666666666553 56666666666666666555555 345666
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHH-HHHHHHHHcCCHHHHHHHHHHHhcc
Q 002375 828 MAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLH-LRAAFYESIGDLTSAIRDSQAALCL 906 (929)
Q Consensus 828 ~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~-~la~~~~~~g~~~~A~~~~~~al~l 906 (929)
+|+..++++++++|+++.++..+|.++...|++++|+..|++++..+|+...++ .+|.++...|++++|+..|+++++.
T Consensus 302 eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 302 KAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 666666666666666666666666666666666666666666666666554433 2355566666666666666666666
Q ss_pred CCCC
Q 002375 907 DPNH 910 (929)
Q Consensus 907 ~P~~ 910 (929)
+|++
T Consensus 382 ~P~~ 385 (656)
T PRK15174 382 RASH 385 (656)
T ss_pred Chhh
Confidence 5553
No 14
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.95 E-value=6.3e-25 Score=262.26 Aligned_cols=316 Identities=12% Similarity=0.026 Sum_probs=284.0
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccC-CHhHHHHHHHHHHHhccHHHHHHHHHHHHh
Q 002375 498 REKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLALLA 576 (929)
Q Consensus 498 ~~Ai~~~~~al~l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~~g~~~eA~~~~~~al~ 576 (929)
.+|+..++.++...|+++.+++.+|.+....|++++|+..|++++..+| ++..+..+|.++...|++++|+..|+++++
T Consensus 59 ~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~ 138 (656)
T PRK15174 59 DVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWL 138 (656)
T ss_pred chhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3899999999999999999999999999999999999999999999999 888999999999999999999999999999
Q ss_pred hcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHHHHhcCH
Q 002375 577 LESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQ 656 (929)
Q Consensus 577 ~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~d~~~al~~~~~al~~~p~~~~~~~~lg~~~~~~g~~ 656 (929)
++|++. .++..++.++...|++++|...+ .+++...|+++.++...+ .+...|++
T Consensus 139 l~P~~~------~a~~~la~~l~~~g~~~eA~~~~------------------~~~~~~~P~~~~a~~~~~-~l~~~g~~ 193 (656)
T PRK15174 139 AFSGNS------QIFALHLRTLVLMDKELQAISLA------------------RTQAQEVPPRGDMIATCL-SFLNKSRL 193 (656)
T ss_pred hCCCcH------HHHHHHHHHHHHCCChHHHHHHH------------------HHHHHhCCCCHHHHHHHH-HHHHcCCH
Confidence 999998 77788999999999999995555 888889999998887764 47889999
Q ss_pred HHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHHHHHhcCCCCCChHHHHHHHH
Q 002375 657 KAAMRCLRLARNHSSS-EHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLE 735 (929)
Q Consensus 657 ~~A~~~l~~al~~~p~-~~~~~~~lg~~~~~~g~~~eA~~~~~~al~l~p~~~a~~~l~~~l~~~~~~~~~~~~a~~~~~ 735 (929)
++|+..++++++.+|. .......++.++...|++++|+..|+++++.+|++
T Consensus 194 ~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~---------------------------- 245 (656)
T PRK15174 194 PEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDG---------------------------- 245 (656)
T ss_pred HHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC----------------------------
Confidence 9999999999998763 34445667889999999999999999999998877
Q ss_pred HHhhchhccCchhHHHHHHHHHHHHcCCHHH----HHHHHHHHHcC--CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 002375 736 EALRCPSDGLRKGQALNNLGSIYVECGKLDQ----AENCYINALDI--KHTRAHQGLARVYYLKNELKAAYDEMTKLLEK 809 (929)
Q Consensus 736 ~Al~~~~~~l~~~~a~~~lg~~~~~~g~~~e----A~~~~~~al~~--~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~ 809 (929)
..++.++|.++...|++++ |+..|+++++. +++.++..+|.++...|++++|+..+++++..
T Consensus 246 ------------~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l 313 (656)
T PRK15174 246 ------------AALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT 313 (656)
T ss_pred ------------HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 4557788888888999885 89999999998 45678999999999999999999999999999
Q ss_pred ccCCHHHHHHHh----hcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCch
Q 002375 810 AQYSASAFEKRS----EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQ 878 (929)
Q Consensus 810 ~p~~~~~~~~lg----~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~ 878 (929)
+|+++.++..+| ..|++++|+..|++++..+|.....+..+|.++...|++++|+..|+++++.+|++.
T Consensus 314 ~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 314 HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 999999888888 679999999999999999998888787889999999999999999999999999863
No 15
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.2e-24 Score=229.11 Aligned_cols=425 Identities=13% Similarity=0.093 Sum_probs=307.8
Q ss_pred HHHHHHHHHhhHHHHhcccHHHHHHHHHHHHhcCccccHHHHHHHHHHhchHHHHHHHHHhhhcCCCcchhhhHHHHHhh
Q 002375 416 WQRMLALHQLGCVMFEREEYKDACYYFEAAADAGHIYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYN 495 (929)
Q Consensus 416 ~~~a~~~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~~~a~la~~~~~~g~a~~a~~~~~~l~~~~~~~~~~~~~~~l~~ 495 (929)
...+..+-..|+.+++.|+|++||++|+.||+..|+... .|.++...+..++
T Consensus 112 ~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epi-----FYsNraAcY~~lg----------------------- 163 (606)
T KOG0547|consen 112 LKYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPI-----FYSNRAACYESLG----------------------- 163 (606)
T ss_pred HHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCch-----hhhhHHHHHHHHh-----------------------
Confidence 345778889999999999999999999999999998655 5555555555555
Q ss_pred hhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccC--CHhHHHHHHHHHHHhcc--HH------
Q 002375 496 LGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL--SVDCLELRAWLFIAADD--YE------ 565 (929)
Q Consensus 496 ~~~~Ai~~~~~al~l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~a~~~~~~g~--~~------ 565 (929)
+-++-+++..+|++++|+...+++.|+.++...|++.+|+....-.--+.. +...-...-..+-.++. ..
T Consensus 164 d~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~n 243 (606)
T KOG0547|consen 164 DWEKVIEDCTKALELNPDYVKALLRRASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKEN 243 (606)
T ss_pred hHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhccc
Confidence 334667788999999999999999999999999999999877654321111 11111111111111110 00
Q ss_pred --------HHHHHHHHHHhhcCCchhhhccccHHHHHHHHH--Hh---hcccchHHHHHHhhhccccccccccHHHHHHH
Q 002375 566 --------SALRDTLALLALESNYMMFHGRVSGDHLVKLLN--HH---VRSWSPADCWIKLYDRWSSVDDIGSLAVINQM 632 (929)
Q Consensus 566 --------eA~~~~~~al~~~p~~~~~~~~~~a~~ll~~~~--~~---~~~~~~A~~~l~l~~~~~~~d~~~al~~~~~a 632 (929)
.-+..|-..+.-+|........-.+...+...+ .. ...|.+|...+.-.. ..+...
T Consensus 244 r~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~-----------~~~~~~ 312 (606)
T KOG0547|consen 244 RPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEEC-----------LGSESS 312 (606)
T ss_pred CCCCCCcHHHHHHHHhhccccccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHh-----------hhhhhh
Confidence 011122222221111110000000111111111 01 112222222220000 000000
Q ss_pred HhcC------CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccc
Q 002375 633 LIND------PGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERT 706 (929)
Q Consensus 633 l~~~------p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~l~p~ 706 (929)
+..+ ..-+.++...|..++-.|++..|...|++++.++|.+...|..+|.+|.+.++.++-...|.+|..++|+
T Consensus 313 ~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~ 392 (606)
T KOG0547|consen 313 LSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE 392 (606)
T ss_pred ccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC
Confidence 0001 0115677888999999999999999999999999999999999999999999999999999999999998
Q ss_pred hHHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcCC--ChHHHH
Q 002375 707 FEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQ 784 (929)
Q Consensus 707 ~~a~~~l~~~l~~~~~~~~~~~~a~~~~~~Al~~~~~~l~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~--~~~a~~ 784 (929)
+ +++|+..|.+++-.+++++|+..|++++.++ +..++.
T Consensus 393 n----------------------------------------~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~i 432 (606)
T KOG0547|consen 393 N----------------------------------------PDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYI 432 (606)
T ss_pred C----------------------------------------CchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHH
Confidence 8 6678889999999999999999999999995 456888
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHh----hcCCHHHHHHHHHHHHhcCCC------CcHHHHHHHHHH
Q 002375 785 GLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS----EYSDREMAKNDLNMATQLDPL------RTYPYRYRAAVL 854 (929)
Q Consensus 785 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg----~~~~~~~A~~~~~~al~l~p~------~~~~~~~la~~~ 854 (929)
.++.+.+++++++++...|+.++...|+.+++|...+ ..+++++|++.|.+++.+.|. ++.++...|.+.
T Consensus 433 Ql~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~ 512 (606)
T KOG0547|consen 433 QLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLV 512 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhh
Confidence 9999999999999999999999999999999988777 568999999999999999998 777777777665
Q ss_pred Hh-cCCHHHHHHHHHHHHhcCCCchHHH-HHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHH
Q 002375 855 MD-DQKEVEAVEELSKAIAFKPDLQMLH-LRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNR 919 (929)
Q Consensus 855 ~~-~g~~~eA~~~l~kal~~~p~~~~~~-~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~ 919 (929)
.+ .+++..|+..+++|++++|.....+ .+|.+..++|+.++|+++|++++.+.-.-.+....+.-
T Consensus 513 ~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lArt~~E~~~a~s~ 579 (606)
T KOG0547|consen 513 LQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLARTESEMVHAYSL 579 (606)
T ss_pred hchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 54 3689999999999999999998777 78999999999999999999999987776666655543
No 16
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.95 E-value=2e-24 Score=263.38 Aligned_cols=389 Identities=12% Similarity=-0.012 Sum_probs=321.7
Q ss_pred hhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccC-CHhHHHHHHHHHHHhccHHHHHHHHHHH
Q 002375 496 LGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLAL 574 (929)
Q Consensus 496 ~~~~Ai~~~~~al~l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~~g~~~eA~~~~~~a 574 (929)
..++|+..+.++...+|..+.++..+|.++...|++++|+..++++++..| +++.+..++.++...|++++|+..++++
T Consensus 30 ~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~ 109 (765)
T PRK10049 30 QDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQL 109 (765)
T ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 445899999999999999999999999999999999999999999999988 7888999999999999999999999999
Q ss_pred HhhcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHHHHhc
Q 002375 575 LALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLN 654 (929)
Q Consensus 575 l~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~d~~~al~~~~~al~~~p~~~~~~~~lg~~~~~~g 654 (929)
++..|++. . +..++.++...|++++|...+ +++++.+|+++.++..++.++...+
T Consensus 110 l~~~P~~~------~-~~~la~~l~~~g~~~~Al~~l------------------~~al~~~P~~~~~~~~la~~l~~~~ 164 (765)
T PRK10049 110 VSGAPDKA------N-LLALAYVYKRAGRHWDELRAM------------------TQALPRAPQTQQYPTEYVQALRNNR 164 (765)
T ss_pred HHhCCCCH------H-HHHHHHHHHHCCCHHHHHHHH------------------HHHHHhCCCCHHHHHHHHHHHHHCC
Confidence 99999999 7 778999999999999995555 9999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCchHH-----HHHHHHHHHH-----HcCCH---HHHHHHHHHHHhhccch----H----HHHHH
Q 002375 655 CQKAAMRCLRLARNHSSSEHE-----RLVYEGWILY-----DTGHR---EEALSRAEKSISIERTF----E----AFFLK 713 (929)
Q Consensus 655 ~~~~A~~~l~~al~~~p~~~~-----~~~~lg~~~~-----~~g~~---~eA~~~~~~al~l~p~~----~----a~~~l 713 (929)
..++|+..++++.. .|+... ....+..+.. ..+++ ++|+..++++++..|.+ . +....
T Consensus 165 ~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~ 243 (765)
T PRK10049 165 LSAPALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDR 243 (765)
T ss_pred ChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHH
Confidence 99999999998776 554311 1122222222 23345 78999999999764332 1 11111
Q ss_pred HHHHHhcCCCCCChHHHHHHHHHHhhchhccCc-----hhHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCC------hHH
Q 002375 714 AYILADTNLDPESSTYVIQLLEEALRCPSDGLR-----KGQALNNLGSIYVECGKLDQAENCYINALDIKH------TRA 782 (929)
Q Consensus 714 ~~~l~~~~~~~~~~~~a~~~~~~Al~~~~~~l~-----~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~------~~a 782 (929)
...+...+ ++++|+..|++.++ |..+...+|.+|...|++++|+..|+++++..+ ...
T Consensus 244 l~~Ll~~g-----------~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~ 312 (765)
T PRK10049 244 LGALLARD-----------RYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEE 312 (765)
T ss_pred HHHHHHhh-----------hHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHH
Confidence 12233333 67777777777654 334555579999999999999999999988742 246
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHccCC---------------HHHHHHHh----hcCCHHHHHHHHHHHHhcCCCC
Q 002375 783 HQGLARVYYLKNELKAAYDEMTKLLEKAQYS---------------ASAFEKRS----EYSDREMAKNDLNMATQLDPLR 843 (929)
Q Consensus 783 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~lg----~~~~~~~A~~~~~~al~l~p~~ 843 (929)
...++.++...|++++|+..++++....|.. ..++..++ ..|++++|+..+++++...|.+
T Consensus 313 ~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n 392 (765)
T PRK10049 313 LADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGN 392 (765)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 7778888999999999999999999987632 23444444 6799999999999999999999
Q ss_pred cHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHH-HHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 002375 844 TYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLH-LRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNRAR 921 (929)
Q Consensus 844 ~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~-~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~l~ 921 (929)
+.++..+|.++...|++++|++.++++++++|++..+. .+|.++...|++++|...++++++.+|+++.+..+....+
T Consensus 393 ~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~~~~~~~ 471 (765)
T PRK10049 393 QGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQRLARARD 471 (765)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999997666 6799999999999999999999999999998877665553
No 17
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.93 E-value=8.1e-23 Score=249.34 Aligned_cols=393 Identities=13% Similarity=-0.000 Sum_probs=311.1
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccC-CHhHHHHHHHHHHHhccHHHHHHHHHHHHhhcCCc
Q 002375 503 DLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLALLALESNY 581 (929)
Q Consensus 503 ~~~~al~l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~~g~~~eA~~~~~~al~~~p~~ 581 (929)
.++. -...|-++.-......+....|+.++|+..+.++....+ ....+..+|.++...|++++|+..|+++++.+|++
T Consensus 4 ~~~~-~~~~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~ 82 (765)
T PRK10049 4 WLRQ-ALKSALSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQN 82 (765)
T ss_pred hhhh-hhccCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 3444 344566666666667788999999999999999987565 55568999999999999999999999999999999
Q ss_pred hhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHH
Q 002375 582 MMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMR 661 (929)
Q Consensus 582 ~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~d~~~al~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 661 (929)
+ .+...++.++...|++++|...+ +++++.+|+++. +..+|.++...|++++|+.
T Consensus 83 ~------~a~~~la~~l~~~g~~~eA~~~l------------------~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~ 137 (765)
T PRK10049 83 D------DYQRGLILTLADAGQYDEALVKA------------------KQLVSGAPDKAN-LLALAYVYKRAGRHWDELR 137 (765)
T ss_pred H------HHHHHHHHHHHHCCCHHHHHHHH------------------HHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHH
Confidence 8 67778999999999999996666 999999999999 9999999999999999999
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch-HHH-HHHHHHHHhcCCCCC-----Ch---HHHH
Q 002375 662 CLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAF-FLKAYILADTNLDPE-----SS---TYVI 731 (929)
Q Consensus 662 ~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~l~p~~-~a~-~~l~~~l~~~~~~~~-----~~---~~a~ 731 (929)
.++++++..|+++.++..+|.++...|+.++|+..++++.. .|+. ... ............... .. ..++
T Consensus 138 ~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al 216 (765)
T PRK10049 138 AMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRAL 216 (765)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHH
Confidence 99999999999999999999999999999999999998886 6553 110 001111111111111 11 2334
Q ss_pred HHHHHHhhchhccCch----hHHHHH-HHHHHHHcCCHHHHHHHHHHHHcCC---ChHHHHHHHHHHHHhCCHHHHHHHH
Q 002375 732 QLLEEALRCPSDGLRK----GQALNN-LGSIYVECGKLDQAENCYINALDIK---HTRAHQGLARVYYLKNELKAAYDEM 803 (929)
Q Consensus 732 ~~~~~Al~~~~~~l~~----~~a~~~-lg~~~~~~g~~~eA~~~~~~al~~~---~~~a~~~la~~~~~~g~~~~A~~~~ 803 (929)
..++.+++.+.+.... ..+... +| ++...|++++|+..|+++++.. +..+...+|.+|...|++++|+..|
T Consensus 217 ~~~~~ll~~~~~~p~~~~~~~~a~~d~l~-~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l 295 (765)
T PRK10049 217 AQYDALEALWHDNPDATADYQRARIDRLG-ALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSIL 295 (765)
T ss_pred HHHHHHHhhcccCCccchHHHHHHHHHHH-HHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 4444444332222211 122333 34 4467799999999999999884 4556666899999999999999999
Q ss_pred HHHHHHccCC----HHHHHHH----hhcCCHHHHHHHHHHHHhcCCCC---------------cHHHHHHHHHHHhcCCH
Q 002375 804 TKLLEKAQYS----ASAFEKR----SEYSDREMAKNDLNMATQLDPLR---------------TYPYRYRAAVLMDDQKE 860 (929)
Q Consensus 804 ~~al~~~p~~----~~~~~~l----g~~~~~~~A~~~~~~al~l~p~~---------------~~~~~~la~~~~~~g~~ 860 (929)
+++++..|.+ ......+ .+.|++++|+..++++....|.. ..++..+|.++...|++
T Consensus 296 ~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~ 375 (765)
T PRK10049 296 TELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDL 375 (765)
T ss_pred HHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCH
Confidence 9999888765 2222322 36799999999999999987732 34677899999999999
Q ss_pred HHHHHHHHHHHhcCCCchHHH-HHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHhh
Q 002375 861 VEAVEELSKAIAFKPDLQMLH-LRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNRARDQ 923 (929)
Q Consensus 861 ~eA~~~l~kal~~~p~~~~~~-~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~l~~~ 923 (929)
++|++.+++++...|+++.++ .+|.++...|++++|++.++++++++|++..++..++.+...
T Consensus 376 ~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~ 439 (765)
T PRK10049 376 PQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALD 439 (765)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH
Confidence 999999999999999997666 779999999999999999999999999998887777665443
No 18
>PHA02790 Kelch-like protein; Provisional
Probab=99.93 E-value=1.7e-26 Score=265.90 Aligned_cols=146 Identities=13% Similarity=0.120 Sum_probs=132.7
Q ss_pred CCCCCC-EEEEEcCeEEEehhHHHhccCHHHHHHhcCCCCcCCCCeeEecCCCCCHHHHHHHhhhhccCCCCCCCHhHHH
Q 002375 214 LEEDDS-VTFCVRDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFCPGIVL 292 (929)
Q Consensus 214 ~~~~~~-v~~~v~~~~~~~hr~iLaa~S~~F~~m~~~~~~e~~~~~i~~~~~~~~~~~~~~~l~~~yt~~~~~~~~~~~~ 292 (929)
.....+ |++++ |++|+|||+|||++||||++||+++|+|+.+ +|++-..++++++|+.+|+|+|||++. ++.++|+
T Consensus 18 ~~~~~~~~~~~~-~~~~~~HR~VLAa~S~YFraMF~~~~~Es~~-~v~~~~~~v~~~~l~~lldy~YTg~l~-it~~nV~ 94 (480)
T PHA02790 18 MTKKFKTIIEAI-GGNIIVNSTILKKLSPYFRTHLRQKYTKNKD-PVTRVCLDLDIHSLTSIVIYSYTGKVY-IDSHNVV 94 (480)
T ss_pred hhhhhceEEEEc-CcEEeeehhhhhhcCHHHHHHhcCCcccccc-ceEEEecCcCHHHHHHHHHhheeeeEE-EecccHH
Confidence 344455 66655 5699999999999999999999999999965 566521389999999999999999999 9999999
Q ss_pred HHHHHhchhChHhHHHHHHHHHHhhcCChhhHHHHHHHHHhhChHHHHHHHHHHHhhhhhhhcCc--chhhhh
Q 002375 293 ELLSFANRFCCEEMKSACDAHLASLVGDIEDALILIDYGLEERATLLVASCLQVLLRELPSSLYN--PKVMKI 363 (929)
Q Consensus 293 ~ll~~A~~~~~~~l~~~C~~~l~~~~~~~~n~~~~~~~a~~~~~~~L~~~c~~~i~~~~~~~~~~--~~f~~L 363 (929)
+||.+|++||++.+++.|++||.+.|+ ++||+.|+.+|+.|+|++|.+.|.+||.+||.++.++ ++|..|
T Consensus 95 ~ll~aA~~Lqi~~v~~~C~~fL~~~l~-~~NCl~i~~~A~~y~~~~L~~~a~~fi~~nF~~v~~~~~~ef~~L 166 (480)
T PHA02790 95 NLLRASILTSVEFIIYTCINFILRDFR-KEYCVECYMMGIEYGLSNLLCHTKDFIAKHFLELEDDIIDNFDYL 166 (480)
T ss_pred HHHHHHHHhChHHHHHHHHHHHHhhCC-cchHHHHHHHHHHhCHHHHHHHHHHHHHHhHHHHhcccchhhhhC
Confidence 999999999999999999999999999 9999999999999999999999999999999999986 788765
No 19
>PHA02713 hypothetical protein; Provisional
Probab=99.93 E-value=1.2e-25 Score=262.19 Aligned_cols=152 Identities=12% Similarity=0.205 Sum_probs=140.4
Q ss_pred chhhhhccCCCCCC-EEEEEc-CeEEEehhHHHhccCHHHHHHhcCCCCcCC-CCeeEecCCCCCHHHHHHHhhhhccCC
Q 002375 206 VEKFVCLSLEEDDS-VTFCVR-DKEISFVRNKIASLSSPFKAMLYGGFVESK-RKTIDFSHDGVSVEGLRAVEVYTRTSR 282 (929)
Q Consensus 206 ~~~~~~~~~~~~~~-v~~~v~-~~~~~~hr~iLaa~S~~F~~m~~~~~~e~~-~~~i~~~~~~~~~~~~~~~l~~~yt~~ 282 (929)
......++.++..+ |+++|+ |++|+|||.||||+|+||++||+++|+|+. +++|+| +++++++|+.+|+|+|||+
T Consensus 13 l~~l~~lr~~~~l~DV~L~v~~~~~f~~Hr~vLaa~S~YF~amF~~~~~e~~~~~~v~l--~~v~~~~~~~ll~y~Yt~~ 90 (557)
T PHA02713 13 VSNISNLLDDDILCDVIITIGDGEEIKAHKTILAAGSKYFRTLFTTPMIIRDLVTRVNL--QMFDKDAVKNIVQYLYNRH 90 (557)
T ss_pred HHHHHHHHhCCCCCCEEEEeCCCCEEeehHHHHhhcCHHHHHHhcCCchhhccCceEEe--ccCCHHHHHHHHHHhcCCC
Confidence 34445555566666 999997 899999999999999999999999999875 789999 9999999999999999996
Q ss_pred CCCCCHhHHHHHHHHhchhChHhHHHHHHHHHHhhcCChhhHHHHHHHHHhhChHHHHHHHHHHHhhhhhhhcCcchhhh
Q 002375 283 VDLFCPGIVLELLSFANRFCCEEMKSACDAHLASLVGDIEDALILIDYGLEERATLLVASCLQVLLRELPSSLYNPKVMK 362 (929)
Q Consensus 283 ~~~~~~~~~~~ll~~A~~~~~~~l~~~C~~~l~~~~~~~~n~~~~~~~a~~~~~~~L~~~c~~~i~~~~~~~~~~~~f~~ 362 (929)
++.++|++||.+|++|+++.|++.|++||.+.|+ ++||+.++.++..+++..|.+.|.+||.+||.++.++++|+.
T Consensus 91 ---i~~~nv~~ll~aA~~lqi~~l~~~C~~~l~~~l~-~~NCl~i~~~~~~~~~~~L~~~a~~~i~~~f~~v~~~~ef~~ 166 (557)
T PHA02713 91 ---ISSMNVIDVLKCADYLLIDDLVTDCESYIKDYTN-HDTCIYMYHRLYEMSHIPIVKYIKRMLMSNIPTLITTDAFKK 166 (557)
T ss_pred ---CCHHHHHHHHHHHHHHCHHHHHHHHHHHHHhhCC-ccchHHHHHHHHhccchHHHHHHHHHHHHHHHHHhCChhhhh
Confidence 5789999999999999999999999999999999 999999999999999999999999999999999999999987
Q ss_pred h
Q 002375 363 I 363 (929)
Q Consensus 363 L 363 (929)
|
T Consensus 167 L 167 (557)
T PHA02713 167 T 167 (557)
T ss_pred C
Confidence 5
No 20
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.93 E-value=8.3e-26 Score=261.98 Aligned_cols=155 Identities=25% Similarity=0.298 Sum_probs=148.2
Q ss_pred cchhhhhccCCCCCC-EEEEEcCeEEEehhHHHhccCHHHHHHhcCCCCcCCCCeeEecCCCCCHHHHHHHhhhhccCCC
Q 002375 205 IVEKFVCLSLEEDDS-VTFCVRDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRV 283 (929)
Q Consensus 205 ~~~~~~~~~~~~~~~-v~~~v~~~~~~~hr~iLaa~S~~F~~m~~~~~~e~~~~~i~~~~~~~~~~~~~~~l~~~yt~~~ 283 (929)
+...+..++.....+ |++.|++++|+|||.||||+||||++||+++|+|+.+.+|+| .++++.+|..+++|+||+++
T Consensus 23 ~l~~l~~lr~~~~lcDv~L~v~~~~~~aHR~VLAa~S~YFraMFt~~l~e~~~~~i~l--~~v~~~~l~~ll~y~Yt~~i 100 (571)
T KOG4441|consen 23 LLQGLNELREEGLLCDVTLLVGDREFPAHRVVLAACSPYFRAMFTSGLKESKQKEINL--EGVDPETLELLLDYAYTGKL 100 (571)
T ss_pred HHHHHHHHHHhCCCceEEEEECCeeechHHHHHHhccHHHHHHhcCCcccccceEEEE--ecCCHHHHHHHHHHhhcceE
Confidence 355666677777777 999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred CCCCHhHHHHHHHHhchhChHhHHHHHHHHHHhhcCChhhHHHHHHHHHhhChHHHHHHHHHHHhhhhhhhcCcchhhhh
Q 002375 284 DLFCPGIVLELLSFANRFCCEEMKSACDAHLASLVGDIEDALILIDYGLEERATLLVASCLQVLLRELPSSLYNPKVMKI 363 (929)
Q Consensus 284 ~~~~~~~~~~ll~~A~~~~~~~l~~~C~~~l~~~~~~~~n~~~~~~~a~~~~~~~L~~~c~~~i~~~~~~~~~~~~f~~L 363 (929)
. ++.++|++||.+|++||+..+++.|++||.+.|+ ++||+.|..+|+.|+|.+|...+..||.+||.++.++++|+.|
T Consensus 101 ~-i~~~nVq~ll~aA~~lQi~~v~~~C~~fL~~~l~-~~Nclgi~~~a~~~~~~~L~~~a~~~i~~~F~~v~~~eefl~L 178 (571)
T KOG4441|consen 101 E-ISEDNVQELLEAASLLQIPEVVDACCEFLESQLD-PSNCLGIRRFAELHSCTELLEVADEYILQHFAEVSKTEEFLLL 178 (571)
T ss_pred E-echHhHHHHHHHHHHhhhHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhccHHhhCC
Confidence 9 9999999999999999999999999999999999 9999999999999999999999999999999999999999874
No 21
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=2e-22 Score=212.42 Aligned_cols=391 Identities=18% Similarity=0.140 Sum_probs=272.7
Q ss_pred HHHHHhhhhh--HHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccC-CHhHHHHHHHHHHHhccHH
Q 002375 489 QERSLYNLGR--EKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYE 565 (929)
Q Consensus 489 ~~~~l~~~~~--~Ai~~~~~al~l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~~g~~~ 565 (929)
.|.-+|..++ +||.+|++||++.|+.+..|.+++.+|...|+|++-++...++++++| ...+++.|+..+-.+|+++
T Consensus 121 ~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~ 200 (606)
T KOG0547|consen 121 KGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLGKFD 200 (606)
T ss_pred hhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccHH
Confidence 3444455544 777777777777777777777777777777777777777777777776 4556777777777777777
Q ss_pred HHHHHHHHHHhhcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCC-------
Q 002375 566 SALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPG------- 638 (929)
Q Consensus 566 eA~~~~~~al~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~d~~~al~~~~~al~~~p~------- 638 (929)
+|+....-. -+..+.... ....++..+...++. .++.+.+. .++-..+.....+..|-..+..+|.
T Consensus 201 eal~D~tv~-ci~~~F~n~----s~~~~~eR~Lkk~a~-~ka~e~~k-~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~ 273 (606)
T KOG0547|consen 201 EALFDVTVL-CILEGFQNA----SIEPMAERVLKKQAM-KKAKEKLK-ENRPPVLPSATFIASYFGSFHADPKPLFDNKS 273 (606)
T ss_pred HHHHhhhHH-HHhhhcccc----hhHHHHHHHHHHHHH-HHHHHhhc-ccCCCCCCcHHHHHHHHhhccccccccccCCC
Confidence 777665432 111111100 111111222211111 01111110 0011111111224444444333321
Q ss_pred -ChHHHHHHHHHHHHhc---CHHHHHHHHHHHHhcC----Cch---------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002375 639 -KSFLRFRQSLLLLRLN---CQKAAMRCLRLARNHS----SSE---------HERLVYEGWILYDTGHREEALSRAEKSI 701 (929)
Q Consensus 639 -~~~~~~~lg~~~~~~g---~~~~A~~~l~~al~~~----p~~---------~~~~~~lg~~~~~~g~~~eA~~~~~~al 701 (929)
.+++-..-+.-++..+ .|.+|...+.+..... ..+ +.++...|..++-.|++-.|...|+.+|
T Consensus 274 ~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I 353 (606)
T KOG0547|consen 274 DKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAI 353 (606)
T ss_pred ccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHH
Confidence 1222222222222223 5677777666654321 111 5677778888888999999999999999
Q ss_pred hhccchHHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC--CC
Q 002375 702 SIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI--KH 779 (929)
Q Consensus 702 ~l~p~~~a~~~l~~~l~~~~~~~~~~~~a~~~~~~Al~~~~~~l~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~--~~ 779 (929)
.++|.+ ...|..+|.+|....+.++-...|.+|..+ .+
T Consensus 354 ~l~~~~----------------------------------------~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n 393 (606)
T KOG0547|consen 354 KLDPAF----------------------------------------NSLYIKRAAAYADENQSEKMWKDFNKAEDLDPEN 393 (606)
T ss_pred hcCccc----------------------------------------chHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCC
Confidence 988866 233778889999999999999999999999 56
Q ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHh----hcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Q 002375 780 TRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS----EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLM 855 (929)
Q Consensus 780 ~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg----~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~ 855 (929)
+++|+..|.+++.++++++|+..|++++.++|++...+.+++ ..++++++...|+.+.+..|+.++.+...|.++.
T Consensus 394 ~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLt 473 (606)
T KOG0547|consen 394 PDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILT 473 (606)
T ss_pred CchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHh
Confidence 789999999999999999999999999999999999999988 5689999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHHhcCCC------chHHH-HHHHHHH-HcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHhhhhh
Q 002375 856 DDQKEVEAVEELSKAIAFKPD------LQMLH-LRAAFYE-SIGDLTSAIRDSQAALCLDPNHMETLDLYNRARDQASH 926 (929)
Q Consensus 856 ~~g~~~eA~~~l~kal~~~p~------~~~~~-~la~~~~-~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~l~~~~~~ 926 (929)
.++++++|++.|.+++++.|. ++..+ ..|.+.. -.+|+..|++.+++|+++||....++..++.+.-+.++
T Consensus 474 DqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~ 552 (606)
T KOG0547|consen 474 DQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGK 552 (606)
T ss_pred hHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhh
Confidence 999999999999999999998 33222 2233222 36999999999999999999999999999988766543
No 22
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1.4e-21 Score=209.80 Aligned_cols=426 Identities=17% Similarity=0.151 Sum_probs=305.1
Q ss_pred HHHhhHHHHhcccHHHHHHHHHHHHhcCccccHHHHHHHHHHhchHHHHHHHHHhhhcCCCcchhhhHHHHHhhhhhHHH
Q 002375 422 LHQLGCVMFEREEYKDACYYFEAAADAGHIYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNLGREKI 501 (929)
Q Consensus 422 ~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~~~a~la~~~~~~g~a~~a~~~~~~l~~~~~~~~~~~~~~~l~~~~~~Ai 501 (929)
+-..|+..+..|+|+.|+..|..|+.++|.+.. .|.++..++.... ...+|+
T Consensus 5 ~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhv-----lySnrsaa~a~~~-----------------------~~~~al 56 (539)
T KOG0548|consen 5 LKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHV-----LYSNRSAAYASLG-----------------------SYEKAL 56 (539)
T ss_pred HHHHHHhhcccccHHHHHHHHHHHHccCCCccc-----hhcchHHHHHHHh-----------------------hHHHHH
Confidence 446799999999999999999999999999877 6666665555554 556888
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccC-CHhHHHHHHHHHHHh-------------------
Q 002375 502 VDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAA------------------- 561 (929)
Q Consensus 502 ~~~~~al~l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~~------------------- 561 (929)
.+-.+.++++|+-+..|..+|..+.-.|+|++|+..|.+.++.+| +......++..+...
T Consensus 57 ~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~ 136 (539)
T KOG0548|consen 57 KDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANL 136 (539)
T ss_pred HHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcC
Confidence 888999999999999999999999999999999999999998888 445555555555111
Q ss_pred --ccHHHHHHHHHHHHhhcCCch---hhhcccc-HHHHHHHHHHhhcccchHHHHHHhhhcccc---------ccccccH
Q 002375 562 --DDYESALRDTLALLALESNYM---MFHGRVS-GDHLVKLLNHHVRSWSPADCWIKLYDRWSS---------VDDIGSL 626 (929)
Q Consensus 562 --g~~~eA~~~~~~al~~~p~~~---~~~~~~~-a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~---------~d~~~al 626 (929)
-++--....|...++..|.++ ..+.... ....++.+.. .+.. . .......... .+....+
T Consensus 137 p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~-~~~~--~--~~~~~~~~~~~~~~p~~~~~~~~~~~ 211 (539)
T KOG0548|consen 137 PLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLKG-VDEL--L--FYASGIEILASMAEPCKQEHNGFPII 211 (539)
T ss_pred hhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHhc-Cccc--c--ccccccccCCCCCCcccccCCCCCcc
Confidence 011112223333343333333 1111100 0001111110 0000 0 0000000000 0000000
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccc
Q 002375 627 AVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERT 706 (929)
Q Consensus 627 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~l~p~ 706 (929)
....+- ...-..+...-.+|...+...++..|++.|..+++++ .+...+.+.+.+|+..|++.+.+.....+++....
T Consensus 212 ~d~~ee-~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre 289 (539)
T KOG0548|consen 212 EDNTEE-RRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE 289 (539)
T ss_pred chhHHH-HHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH
Confidence 000000 0011123345678999999999999999999999999 88888999999999999999999999998876655
Q ss_pred h-HHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC-CChHHHH
Q 002375 707 F-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI-KHTRAHQ 784 (929)
Q Consensus 707 ~-~a~~~l~~~l~~~~~~~~~~~~a~~~~~~Al~~~~~~l~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~-~~~~a~~ 784 (929)
. .-+..++ .+...+|..|...++++.|+.+|++++.. ..
T Consensus 290 ~rad~klIa----------------------------------k~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt----- 330 (539)
T KOG0548|consen 290 LRADYKLIA----------------------------------KALARLGNAYTKREDYEGAIKYYQKALTEHRT----- 330 (539)
T ss_pred HHHHHHHHH----------------------------------HHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC-----
Confidence 4 2222222 22344788888899999999999998876 33
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHh----hcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCH
Q 002375 785 GLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS----EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKE 860 (929)
Q Consensus 785 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg----~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~ 860 (929)
..+.......+++........-.+|.-..--...| ..|++..|+..|.+++..+|+++..|.++|.+|.+.|.+
T Consensus 331 --~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~ 408 (539)
T KOG0548|consen 331 --PDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEY 408 (539)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhH
Confidence 34455556677777777777777777655544455 679999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCchHHHHH-HHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHhh
Q 002375 861 VEAVEELSKAIAFKPDLQMLHLR-AAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNRARDQ 923 (929)
Q Consensus 861 ~eA~~~l~kal~~~p~~~~~~~l-a~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~l~~~ 923 (929)
..|+...+++++++|+....|.+ |.++..+.+|++|.+.|++++++||++.++...+.+..+.
T Consensus 409 ~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 409 PEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEA 472 (539)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 99999999999999999988866 9999999999999999999999999999999998887664
No 23
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.91 E-value=1.4e-24 Score=221.83 Aligned_cols=159 Identities=28% Similarity=0.412 Sum_probs=144.8
Q ss_pred cCCCCCCEEEEEcCeEEEehhHHHhccCHHHHHHhcCCCCcCCCCeeEecCCCCCHHHHHHHhhhhccCCCCC--CCHhH
Q 002375 213 SLEEDDSVTFCVRDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDL--FCPGI 290 (929)
Q Consensus 213 ~~~~~~~v~~~v~~~~~~~hr~iLaa~S~~F~~m~~~~~~e~~~~~i~~~~~~~~~~~~~~~l~~~yt~~~~~--~~~~~ 290 (929)
.+.+-++|+|+|++++|||||+|||+||.|||||++|||.|+.+..|.+ .+...++|+++|+|||||+++. +..+.
T Consensus 40 ~~e~y~DVtfvve~~rfpAHRvILAaRs~yFRAlLYgGm~Es~q~~ipL--q~t~~eAF~~lLrYiYtg~~~l~~~~ed~ 117 (620)
T KOG4350|consen 40 TSEDYSDVTFVVEDTRFPAHRVILAARSSYFRALLYGGMQESHQQLIPL--QETNSEAFRALLRYIYTGKIDLAGVEEDI 117 (620)
T ss_pred hcCcccceEEEEeccccchhhhhHHHHHHHHHHHHhhhhhhhhhccccc--ccccHHHHHHHHHHHhhcceecccchHHH
Confidence 3444455999999999999999999999999999999999999999999 8889999999999999999984 67788
Q ss_pred HHHHHHHhchhChHhHHHHHHHHHHhhcCChhhHHHHHHHHHhhChHHHHHHHHHHHhhhhhhhcCcchhhhhhccchhH
Q 002375 291 VLELLSFANRFCCEEMKSACDAHLASLVGDIEDALILIDYGLEERATLLVASCLQVLLRELPSSLYNPKVMKIFCSSEAT 370 (929)
Q Consensus 291 ~~~ll~~A~~~~~~~l~~~C~~~l~~~~~~~~n~~~~~~~a~~~~~~~L~~~c~~~i~~~~~~~~~~~~f~~L~~~~~~~ 370 (929)
+++.|.+|++|++..|..+-.++|++.+. .+|++.|++.|..|+.++|...|+.|+.+|..+++.++.|..| |.+.-
T Consensus 118 lld~LslAh~Ygf~~Le~aiSeYl~~iL~-~~NvCmifdaA~ly~l~~Lt~~C~mfmDrnA~~lL~~~sFn~L--Sk~sL 194 (620)
T KOG4350|consen 118 LLDYLSLAHRYGFIQLETAISEYLKEILK-NENVCMIFDAAYLYQLTDLTDYCMMFMDRNADQLLEDPSFNRL--SKDSL 194 (620)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHHc-ccceeeeeeHHHHhcchHHHHHHHHHHhcCHHhhhcCcchhhh--hHHHH
Confidence 99999999999999999999999999999 9999999999999999999999999999999999999999877 34444
Q ss_pred HHHHhh
Q 002375 371 ERLANV 376 (929)
Q Consensus 371 ~~~~~~ 376 (929)
+.+..+
T Consensus 195 ~e~l~R 200 (620)
T KOG4350|consen 195 KELLAR 200 (620)
T ss_pred HHHHhh
Confidence 443333
No 24
>PHA03098 kelch-like protein; Provisional
Probab=99.90 E-value=7.6e-24 Score=249.88 Aligned_cols=140 Identities=14% Similarity=0.212 Sum_probs=133.4
Q ss_pred CCCCEEEEE--cCeEEEehhHHHhccCHHHHHHhcCCCCcCCCCeeEecCCCCCHHHHHHHhhhhccCCCCCCCHhHHHH
Q 002375 216 EDDSVTFCV--RDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFCPGIVLE 293 (929)
Q Consensus 216 ~~~~v~~~v--~~~~~~~hr~iLaa~S~~F~~m~~~~~~e~~~~~i~~~~~~~~~~~~~~~l~~~yt~~~~~~~~~~~~~ 293 (929)
...||+++| +|++|+|||.|||++|+||++||+++|+ +.+|+| ++ ++++|+.+|+|+|||++. ++.+++++
T Consensus 8 ~~~Dv~l~~~~~~~~~~~Hk~vLaa~S~yF~~mf~~~~~---~~~i~l--~~-~~~~~~~~l~y~Ytg~~~-i~~~~~~~ 80 (534)
T PHA03098 8 KFCDESIIIVNGGGIIKVHKIILSSSSEYFKKMFKNNFK---ENEINL--NI-DYDSFNEVIKYIYTGKIN-ITSNNVKD 80 (534)
T ss_pred CCCCEEEEEEcCCEEEEeHHHHHHhhhHHHHHHHhCCCC---CceEEe--cC-CHHHHHHHHHHhcCCceE-EcHHHHHH
Confidence 333477777 9999999999999999999999999998 578999 78 999999999999999999 99999999
Q ss_pred HHHHhchhChHhHHHHHHHHHHhhcCChhhHHHHHHHHHhhChHHHHHHHHHHHhhhhhhhcCcchhhhh
Q 002375 294 LLSFANRFCCEEMKSACDAHLASLVGDIEDALILIDYGLEERATLLVASCLQVLLRELPSSLYNPKVMKI 363 (929)
Q Consensus 294 ll~~A~~~~~~~l~~~C~~~l~~~~~~~~n~~~~~~~a~~~~~~~L~~~c~~~i~~~~~~~~~~~~f~~L 363 (929)
||.+|++|+++.|+..|+++|.+.++ .+||+.++.+|+.|++..|.+.|.+||.+||.++.++++|..|
T Consensus 81 ll~~A~~l~~~~l~~~C~~~l~~~l~-~~nc~~~~~~a~~~~~~~L~~~~~~~i~~nf~~v~~~~~f~~l 149 (534)
T PHA03098 81 ILSIANYLIIDFLINLCINYIIKIID-DNNCIDIYRFSFFYGCKKLYSAAYNYIRNNIELIYNDPDFIYL 149 (534)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhCC-HhHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhcCchhhcC
Confidence 99999999999999999999999999 9999999999999999999999999999999999999999887
No 25
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=7.4e-20 Score=192.23 Aligned_cols=373 Identities=15% Similarity=0.073 Sum_probs=264.8
Q ss_pred CChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccC-CHhHHHHHHHHHHHhccHHHHHHHHHHHHhhcCCchhhhccccHH
Q 002375 513 TLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGD 591 (929)
Q Consensus 513 ~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~a~ 591 (929)
.++..++..|.++.+.|....|+..|..++...| .-.+|..++.+. .-+........--|.+..| -..
T Consensus 162 ~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~li-------t~~e~~~~l~~~l~~~~h~----M~~ 230 (559)
T KOG1155|consen 162 KDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELI-------TDIEILSILVVGLPSDMHW----MKK 230 (559)
T ss_pred chhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhh-------chHHHHHHHHhcCcccchH----HHH
Confidence 4467788889999999999999999988885555 445555444332 2223333333333432222 233
Q ss_pred HHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhc-CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 002375 592 HLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLIN-DPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHS 670 (929)
Q Consensus 592 ~ll~~~~~~~~~~~~A~~~l~l~~~~~~~d~~~al~~~~~al~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~ 670 (929)
..+..++....+.+++..-. +..... -|+..-.-...|.+...+.++++|+..|+...+.+
T Consensus 231 ~F~~~a~~el~q~~e~~~k~------------------e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knD 292 (559)
T KOG1155|consen 231 FFLKKAYQELHQHEEALQKK------------------ERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKND 292 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHH------------------HHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcC
Confidence 44556666555666662222 444444 56666666777777777777777777777777777
Q ss_pred CchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch-HHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCc--h
Q 002375 671 SSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLR--K 747 (929)
Q Consensus 671 p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~l~p~~-~a~~~l~~~l~~~~~~~~~~~~a~~~~~~Al~~~~~~l~--~ 747 (929)
|-..+-...+.++++-.++-.+-.-..+.+..++.-. +.-..+|..+.- .+..++|+..|+++++ |
T Consensus 293 PYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSl-----------r~eHEKAv~YFkRALkLNp 361 (559)
T KOG1155|consen 293 PYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSL-----------RSEHEKAVMYFKRALKLNP 361 (559)
T ss_pred CCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHH-----------HHhHHHHHHHHHHHHhcCc
Confidence 7554444444444444433333333333333333211 111112222211 1244444444444433 1
Q ss_pred --hHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCh--HHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHh--
Q 002375 748 --GQALNNLGSIYVECGKLDQAENCYINALDIKHT--RAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS-- 821 (929)
Q Consensus 748 --~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~~--~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg-- 821 (929)
..+|..+|.-|..+++...|++.|++|++++|. ++|+++|.+|..++...=|+-+|+++.+..|++...|..+|
T Consensus 362 ~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~C 441 (559)
T KOG1155|consen 362 KYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGEC 441 (559)
T ss_pred chhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHH
Confidence 477999999999999999999999999999655 69999999999999999999999999999999999999999
Q ss_pred --hcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-------CCch-HHHHHHHHHHHcC
Q 002375 822 --EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFK-------PDLQ-MLHLRAAFYESIG 891 (929)
Q Consensus 822 --~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~-------p~~~-~~~~la~~~~~~g 891 (929)
.+++.++|+.+|.+++........++..+|.+|.+.++.++|..+|++.++.. |... ....+|..+.+.+
T Consensus 442 Y~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~ 521 (559)
T KOG1155|consen 442 YEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMK 521 (559)
T ss_pred HHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhc
Confidence 67999999999999999999999999999999999999999999999999843 3222 2226799999999
Q ss_pred CHHHHHHHHHHHhccCCCCHHHHHHHHHHHhhhh
Q 002375 892 DLTSAIRDSQAALCLDPNHMETLDLYNRARDQAS 925 (929)
Q Consensus 892 ~~~~A~~~~~~al~l~P~~~~a~~~~~~l~~~~~ 925 (929)
++++|-.+...++.-++.-.++..++..++++.+
T Consensus 522 ~~~~As~Ya~~~~~~~~e~eeak~LlReir~~~~ 555 (559)
T KOG1155|consen 522 DFDEASYYATLVLKGETECEEAKALLREIRKIQA 555 (559)
T ss_pred chHHHHHHHHHHhcCCchHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999988888887765
No 26
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.90 E-value=3.4e-21 Score=194.47 Aligned_cols=210 Identities=19% Similarity=0.203 Sum_probs=171.1
Q ss_pred HHHHHhhhhh--HHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccC-CHhHHHHHHHHHHHhccHH
Q 002375 489 QERSLYNLGR--EKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYE 565 (929)
Q Consensus 489 ~~~~l~~~~~--~Ai~~~~~al~l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~~g~~~ 565 (929)
.|..++..++ .|+..|..|++.||++..+++.+|.+|...|+-..|+..+.++++++| -..+...+|.+++++|+++
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele 123 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELE 123 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHH
Confidence 4444555555 899999999999999999999999999999999999999999999998 3445888999999999999
Q ss_pred HHHHHHHHHHhhcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHH
Q 002375 566 SALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFR 645 (929)
Q Consensus 566 eA~~~~~~al~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~d~~~al~~~~~al~~~p~~~~~~~~ 645 (929)
+|...|+.++..+|++.... ++..-++.+.......... .....+.|-...+..+.+.++..|-++.++..
T Consensus 124 ~A~~DF~~vl~~~~s~~~~~---eaqskl~~~~e~~~l~~ql------~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~ 194 (504)
T KOG0624|consen 124 QAEADFDQVLQHEPSNGLVL---EAQSKLALIQEHWVLVQQL------KSASGSGDCQNAIEMITHLLEIQPWDASLRQA 194 (504)
T ss_pred HHHHHHHHHHhcCCCcchhH---HHHHHHHhHHHHHHHHHHH------HHHhcCCchhhHHHHHHHHHhcCcchhHHHHH
Confidence 99999999999999776211 2222222222221111111 11112233334466779999999999999999
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch
Q 002375 646 QSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF 707 (929)
Q Consensus 646 lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~l~p~~ 707 (929)
++.+|...|++..|+..++.+-++..++.+.++.++.+++..|+.+.++...+++++++|++
T Consensus 195 Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdH 256 (504)
T KOG0624|consen 195 RAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDH 256 (504)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcch
Confidence 99999999999999999999999999999999999999999999999999999999999988
No 27
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.90 E-value=1.5e-19 Score=216.18 Aligned_cols=433 Identities=13% Similarity=0.025 Sum_probs=326.1
Q ss_pred HHHHHHhhHHHHhcccHHHHHHHHHHHHhcCccccH--HHHHHHHHHhchHHHHHHHHHhhhcCCCcchhhhHHHHHhhh
Q 002375 419 MLALHQLGCVMFEREEYKDACYYFEAAADAGHIYSL--AGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNL 496 (929)
Q Consensus 419 a~~~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~~~--a~la~~~~~~g~a~~a~~~~~~l~~~~~~~~~~~~~~~l~~~ 496 (929)
+...+..+.+.++.|+|+.|+..|+++++.+|.+.. ..++.++...| .
T Consensus 34 ~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G------------------------------~ 83 (822)
T PRK14574 34 ADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAG------------------------------R 83 (822)
T ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcC------------------------------C
Confidence 446778899999999999999999999999999853 12222222221 3
Q ss_pred hhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccC-CHhHHHHHHHHHHHhccHHHHHHHHHHHH
Q 002375 497 GREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLALL 575 (929)
Q Consensus 497 ~~~Ai~~~~~al~l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~~g~~~eA~~~~~~al 575 (929)
..+|+..+++++.-+|.........|.++..+|++++|+..|+++++.+| +++.+..++..+...++.++|+..++++.
T Consensus 84 ~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~ 163 (822)
T PRK14574 84 DQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELA 163 (822)
T ss_pred cHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhc
Confidence 44788888999833344444444447799999999999999999999998 78888888889999999999999999999
Q ss_pred hhcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHHHHhcC
Q 002375 576 ALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNC 655 (929)
Q Consensus 576 ~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~d~~~al~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 655 (929)
..+|.+. .. ..++.++...+...+| +..++++++.+|++..++..+..++...|-
T Consensus 164 ~~dp~~~------~~-l~layL~~~~~~~~~A------------------L~~~ekll~~~P~n~e~~~~~~~~l~~~~~ 218 (822)
T PRK14574 164 ERDPTVQ------NY-MTLSYLNRATDRNYDA------------------LQASSEAVRLAPTSEEVLKNHLEILQRNRI 218 (822)
T ss_pred ccCcchH------HH-HHHHHHHHhcchHHHH------------------HHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 9998855 22 2334444444444445 556699999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHH--HHHHHHc---------C---CHHHHHHHHHHHHhh---ccch-----HHHHHH
Q 002375 656 QKAAMRCLRLARNHSSSEHERLVYE--GWILYDT---------G---HREEALSRAEKSISI---ERTF-----EAFFLK 713 (929)
Q Consensus 656 ~~~A~~~l~~al~~~p~~~~~~~~l--g~~~~~~---------g---~~~eA~~~~~~al~l---~p~~-----~a~~~l 713 (929)
...|.+...+--.........+... +.-..+. . -.+.|+..+++.+.. .|.. .+..-.
T Consensus 219 ~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Dr 298 (822)
T PRK14574 219 VEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDR 298 (822)
T ss_pred cHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHH
Confidence 9999877665333322222222111 1111111 1 245577777777763 3432 222233
Q ss_pred HHHHHhcCCCCCChHHHHHHHHHHhhchhccCc-----hhHHHHHHHHHHHHcCCHHHHHHHHHHHHcCC------ChH-
Q 002375 714 AYILADTNLDPESSTYVIQLLEEALRCPSDGLR-----KGQALNNLGSIYVECGKLDQAENCYINALDIK------HTR- 781 (929)
Q Consensus 714 ~~~l~~~~~~~~~~~~a~~~~~~Al~~~~~~l~-----~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~------~~~- 781 (929)
..++...+ ++.++++.|+.... |.-+....|..|+..++.++|+..|++++.-. +.+
T Consensus 299 l~aL~~r~-----------r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~ 367 (822)
T PRK14574 299 LGALLVRH-----------QTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDL 367 (822)
T ss_pred HHHHHHhh-----------hHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcch
Confidence 34444444 78888888877642 45788889999999999999999999998753 222
Q ss_pred -HHHHHHHHHHHhCCHHHHHHHHHHHHHHccC------------C---HHHHHHHh----hcCCHHHHHHHHHHHHhcCC
Q 002375 782 -AHQGLARVYYLKNELKAAYDEMTKLLEKAQY------------S---ASAFEKRS----EYSDREMAKNDLNMATQLDP 841 (929)
Q Consensus 782 -a~~~la~~~~~~g~~~~A~~~~~~al~~~p~------------~---~~~~~~lg----~~~~~~~A~~~~~~al~l~p 841 (929)
....|-.+|...+++++|..++++..+..|- | ..+...++ ..|+..+|.+.+++.+...|
T Consensus 368 ~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP 447 (822)
T PRK14574 368 LDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAP 447 (822)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 3477888999999999999999999985551 1 12222233 57999999999999999999
Q ss_pred CCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHH-HHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHH
Q 002375 842 LRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLH-LRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLY 917 (929)
Q Consensus 842 ~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~-~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~ 917 (929)
.+...+..+|.++...|.+.+|...++.+..++|++.... .+|.++..+|++.+|.....++++..|+++.+..+-
T Consensus 448 ~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~~l~ 524 (822)
T PRK14574 448 ANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPSQELD 524 (822)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhHHHHH
Confidence 9999999999999999999999999999999999997666 779999999999999999999999999999877643
No 28
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=9.8e-22 Score=216.14 Aligned_cols=300 Identities=17% Similarity=0.171 Sum_probs=207.2
Q ss_pred HHHHHHHHH--HHhCCHHHHHHHHHHHhcccC-CHhHHHHHHHHHHHhccHHHHHHHHHHHHhhcCCchhhhccccHHHH
Q 002375 517 PYKYRAVAK--MEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHL 593 (929)
Q Consensus 517 a~~~~a~~~--~~~g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~a~~l 593 (929)
.+..+|..+ ..+-+..+|+..|.+.-...+ ..-.+..+|..|+.+++|++|.++|+.+-.+.|-.. +...+
T Consensus 319 llr~~~~~~~~~s~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv------~~mei 392 (638)
T KOG1126|consen 319 LLRGLGEGYRSLSQYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRV------KGMEI 392 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc------cchhH
Confidence 344444444 455677899999999544444 334478899999999999999999999999988766 22222
Q ss_pred HHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCch
Q 002375 594 VKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE 673 (929)
Q Consensus 594 l~~~~~~~~~~~~A~~~l~l~~~~~~~d~~~al~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~ 673 (929)
...+....++-- +..+ .-+..+..+|+.|..|..+|.+|..+++++.|+++|++|++++|.+
T Consensus 393 yST~LWHLq~~v-~Ls~-----------------Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~f 454 (638)
T KOG1126|consen 393 YSTTLWHLQDEV-ALSY-----------------LAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRF 454 (638)
T ss_pred HHHHHHHHHhhH-HHHH-----------------HHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCcc
Confidence 222222211100 0000 0144555566666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHH
Q 002375 674 HERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNN 753 (929)
Q Consensus 674 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~l~p~~~a~~~l~~~l~~~~~~~~~~~~a~~~~~~Al~~~~~~l~~~~a~~~ 753 (929)
..+|..+|.-+..+..+|.|..+|+.|+..+|.+
T Consensus 455 aYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rh---------------------------------------------- 488 (638)
T KOG1126|consen 455 AYAYTLLGHESIATEEFDKAMKSFRKALGVDPRH---------------------------------------------- 488 (638)
T ss_pred chhhhhcCChhhhhHHHHhHHHHHHhhhcCCchh----------------------------------------------
Confidence 6666666666666666666666666666666544
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHh----hcCCHHHH
Q 002375 754 LGSIYVECGKLDQAENCYINALDIKHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS----EYSDREMA 829 (929)
Q Consensus 754 lg~~~~~~g~~~eA~~~~~~al~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg----~~~~~~~A 829 (929)
-.+|+++|.+|.++++++.|.-.|++|++++|.+..+..-.| ..|+.++|
T Consensus 489 --------------------------YnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~A 542 (638)
T KOG1126|consen 489 --------------------------YNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKA 542 (638)
T ss_pred --------------------------hHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHH
Confidence 345555555555555555555555555555555555544444 34566666
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHH-HHHHHHHHcCCHHHHHHHHHHHhccCC
Q 002375 830 KNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLH-LRAAFYESIGDLTSAIRDSQAALCLDP 908 (929)
Q Consensus 830 ~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~-~la~~~~~~g~~~~A~~~~~~al~l~P 908 (929)
+..|++|+.++|.++-..+..|.++...+++++|+..+++..++.|+....+ ++|.+|.++|+.+.|+..|.-|..+||
T Consensus 543 L~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldp 622 (638)
T KOG1126|consen 543 LQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDP 622 (638)
T ss_pred HHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCC
Confidence 6677777778888899999999999999999999999999999999997666 779999999999999999999999999
Q ss_pred CCHH
Q 002375 909 NHME 912 (929)
Q Consensus 909 ~~~~ 912 (929)
.-.+
T Consensus 623 kg~~ 626 (638)
T KOG1126|consen 623 KGAQ 626 (638)
T ss_pred ccch
Confidence 8766
No 29
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=7.4e-20 Score=192.23 Aligned_cols=370 Identities=14% Similarity=0.086 Sum_probs=263.2
Q ss_pred HHHHHHhhHHHHhcccHHHHHHHHHHHHhcCccccHHHHHHHHHHhchHHHHHHHHHhhhcCCC-cchhhhH---HHH--
Q 002375 419 MLALHQLGCVMFEREEYKDACYYFEAAADAGHIYSLAGLARAKYKVGQQYSAYKLINSIISEHK-PTGWMYQ---ERS-- 492 (929)
Q Consensus 419 a~~~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~~~a~la~~~~~~g~a~~a~~~~~~l~~~~~-~~~~~~~---~~~-- 492 (929)
+..++..|.++-+.|....|+..|..++...|++.. ++...+......+.+..++.... ...||-. ..+
T Consensus 164 ~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~-----AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~ 238 (559)
T KOG1155|consen 164 EFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWS-----AWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQ 238 (559)
T ss_pred hHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchH-----HHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHH
Confidence 456788999999999999999999999999999887 44444444444443333332211 1334321 111
Q ss_pred HhhhhhHHHHHHHHHHhc-CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccC-CHhHHHHHHHHHHHhccHHHHHHH
Q 002375 493 LYNLGREKIVDLNYASEL-DPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRD 570 (929)
Q Consensus 493 l~~~~~~Ai~~~~~al~l-~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~~g~~~eA~~~ 570 (929)
-+.+.++++..++..... .|++...-...|.+...+.|+++|+..|+.+.+.+| ..+.......+++-.++-.+---.
T Consensus 239 el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~L 318 (559)
T KOG1155|consen 239 ELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYL 318 (559)
T ss_pred HHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHH
Confidence 122334677777776666 677777777777888888888888888888877766 444444444444444443333333
Q ss_pred HHHHHhhcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHH
Q 002375 571 TLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLL 650 (929)
Q Consensus 571 ~~~al~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~d~~~al~~~~~al~~~p~~~~~~~~lg~~~ 650 (929)
-+.+..++.-.+ +....+|.-|...++.++|..++ +++++++|+...+|..+|.-|
T Consensus 319 A~~v~~idKyR~------ETCCiIaNYYSlr~eHEKAv~YF------------------kRALkLNp~~~~aWTLmGHEy 374 (559)
T KOG1155|consen 319 AQNVSNIDKYRP------ETCCIIANYYSLRSEHEKAVMYF------------------KRALKLNPKYLSAWTLMGHEY 374 (559)
T ss_pred HHHHHHhccCCc------cceeeehhHHHHHHhHHHHHHHH------------------HHHHhcCcchhHHHHHhhHHH
Confidence 344555554444 55666777777777777775555 777777887777787888877
Q ss_pred HHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHHHHHhcCCCCCChHHH
Q 002375 651 LRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYV 730 (929)
Q Consensus 651 ~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~l~p~~~a~~~l~~~l~~~~~~~~~~~~a 730 (929)
..+.+...|+..|++|++++|.+..+|+.+|.+|.-++-..=|+-+|++|.+..|++
T Consensus 375 vEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnD----------------------- 431 (559)
T KOG1155|consen 375 VEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPND----------------------- 431 (559)
T ss_pred HHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCc-----------------------
Confidence 777777788888888888888777788888888777777777777777777777766
Q ss_pred HHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCh--HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 002375 731 IQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIKHT--RAHQGLARVYYLKNELKAAYDEMTKLLE 808 (929)
Q Consensus 731 ~~~~~~Al~~~~~~l~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~~--~a~~~la~~~~~~g~~~~A~~~~~~al~ 808 (929)
...|..||.+|.+.++.++|+++|.+++..+++ .++..+|.+|.+.++..+|...|.+.++
T Consensus 432 -----------------sRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 432 -----------------SRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred -----------------hHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 566888999999999999999999999998555 7899999999999999999999988887
Q ss_pred HccCCHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHH
Q 002375 809 KAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQML 880 (929)
Q Consensus 809 ~~p~~~~~~~~lg~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~ 880 (929)
.. ...-..+|....+...||.-+.+.+++++|..+..+++..++.-...
T Consensus 495 ~~-----------------------~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e~eea 543 (559)
T KOG1155|consen 495 VS-----------------------ELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGETECEEA 543 (559)
T ss_pred HH-----------------------HhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCchHHHH
Confidence 52 11112344445566668889999999999999999888775544433
No 30
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.89 E-value=2.7e-20 Score=193.55 Aligned_cols=269 Identities=18% Similarity=0.182 Sum_probs=226.3
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHc--CCHHHHHHHHHHHHhhccch-HHHHHHHHH
Q 002375 641 FLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE-HERLVYEGWILYDT--GHREEALSRAEKSISIERTF-EAFFLKAYI 716 (929)
Q Consensus 641 ~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~-~~~~~~lg~~~~~~--g~~~eA~~~~~~al~l~p~~-~a~~~l~~~ 716 (929)
++-.+.+.-|.+.|+++.|++.+.-.-+.+... ..+-.++..+++-+ .++..|..+...++.++.-+ .+..+.|..
T Consensus 420 dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~ 499 (840)
T KOG2003|consen 420 DLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNI 499 (840)
T ss_pred hhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCce
Confidence 344566778889999999999887665554443 33445666555553 46888888888888887766 444444443
Q ss_pred HHhcCCCCCChHHHHHHHHHHhhchhccCch----hHHHHHHHHHHHHcCCHHHHHHHHHHHHcC--CChHHHHHHHHHH
Q 002375 717 LADTNLDPESSTYVIQLLEEALRCPSDGLRK----GQALNNLGSIYVECGKLDQAENCYINALDI--KHTRAHQGLARVY 790 (929)
Q Consensus 717 l~~~~~~~~~~~~a~~~~~~Al~~~~~~l~~----~~a~~~lg~~~~~~g~~~eA~~~~~~al~~--~~~~a~~~la~~~ 790 (929)
.... +.+++|.+.|+.++.. .++++++|..+..+|+.++|+++|-+.-.+ ++..+++.++.+|
T Consensus 500 ~f~n-----------gd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiy 568 (840)
T KOG2003|consen 500 AFAN-----------GDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIY 568 (840)
T ss_pred eeec-----------CcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3333 3788888888888764 389999999999999999999999887766 8899999999999
Q ss_pred HHhCCHHHHHHHHHHHHHHccCCHHHHHHHh----hcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHH
Q 002375 791 YLKNELKAAYDEMTKLLEKAQYSASAFEKRS----EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEE 866 (929)
Q Consensus 791 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg----~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~ 866 (929)
..+.+..+|++.+.++...-|+++.++..++ +-|+..+|.+++-...+..|-+.+..-.+|..|....-+++|+.+
T Consensus 569 e~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y 648 (840)
T KOG2003|consen 569 ELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINY 648 (840)
T ss_pred HHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHH
Confidence 9999999999999999999999999999999 458889999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCchHHHHH-HHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHH
Q 002375 867 LSKAIAFKPDLQMLHLR-AAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNRA 920 (929)
Q Consensus 867 l~kal~~~p~~~~~~~l-a~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~l 920 (929)
|+++.-+.|+...|.++ +.|+.+.|+|.+|.+.|+..-...|.+.+.+..+-|+
T Consensus 649 ~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri 703 (840)
T KOG2003|consen 649 FEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRI 703 (840)
T ss_pred HHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence 99999999999988855 9999999999999999999999999999888777665
No 31
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=4.4e-20 Score=198.83 Aligned_cols=393 Identities=17% Similarity=0.087 Sum_probs=282.8
Q ss_pred HHHHHHHhhHHHHhcccHHHHHHHHHHHHhcCccccHHHHHHHHHHhchHHHHHHHHHhhhcCCCcchhhhHHHHHhhhh
Q 002375 418 RMLALHQLGCVMFEREEYKDACYYFEAAADAGHIYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNLG 497 (929)
Q Consensus 418 ~a~~~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~~~a~la~~~~~~g~a~~a~~~~~~l~~~~~~~~~~~~~~~l~~~~ 497 (929)
.+..++..|.+|....+.++|...|.+|+..++....+-....-...-.+.+.++.+.++--. . +....
T Consensus 140 essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a-----~------~~~ed 208 (611)
T KOG1173|consen 140 ESSICYLRGKVYVALDNREEARDKYKEALLADAKCFEAFEKLVSAHMLTAQEEFELLESLDLA-----M------LTKED 208 (611)
T ss_pred hhceeeeeeehhhhhccHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcchhHHHHHHhcccHH-----h------hhhhH
Confidence 345778899999999999999999999999988877642111111111121222211110000 0 00011
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccCCHhHHHHHHHHHHHhccHHHHHHHHHHHHhh
Q 002375 498 REKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLAL 577 (929)
Q Consensus 498 ~~Ai~~~~~al~l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~al~~ 577 (929)
.+-++.+-++....-.+.. ...+.++ ++.+....+++.....+..++..+++.+..+..+..++.
T Consensus 209 ~e~l~~lyel~~~k~~n~~-------~~~r~~~--------~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~ 273 (611)
T KOG1173|consen 209 VERLEILYELKLCKNRNEE-------SLTRNED--------ESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEK 273 (611)
T ss_pred HHHHHHHHHhhhhhhcccc-------ccccCch--------hhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhh
Confidence 1111111111100000000 0001111 444555567888899999999999999999999999999
Q ss_pred cCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHH
Q 002375 578 ESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQK 657 (929)
Q Consensus 578 ~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~d~~~al~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~ 657 (929)
+|-+..+ +-+.-..+...|+..+-..+- .+.++..|+.+..|+..|..|...|++.
T Consensus 274 dpfh~~~------~~~~ia~l~el~~~n~Lf~ls------------------h~LV~~yP~~a~sW~aVg~YYl~i~k~s 329 (611)
T KOG1173|consen 274 DPFHLPC------LPLHIACLYELGKSNKLFLLS------------------HKLVDLYPSKALSWFAVGCYYLMIGKYS 329 (611)
T ss_pred CCCCcch------HHHHHHHHHHhcccchHHHHH------------------HHHHHhCCCCCcchhhHHHHHHHhcCcH
Confidence 9999843 222222444444444332222 7888899999999999999999999999
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHHHHHhcCCCCCChHHHHHHHHHH
Q 002375 658 AAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEA 737 (929)
Q Consensus 658 ~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~l~p~~~a~~~l~~~l~~~~~~~~~~~~a~~~~~~A 737 (929)
+|.++|.++..++|....+|...|..+.-.|..++|+.+|..|-++-|..
T Consensus 330 eARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~------------------------------ 379 (611)
T KOG1173|consen 330 EARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGC------------------------------ 379 (611)
T ss_pred HHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCC------------------------------
Confidence 99999999999999999999999999999999999999999999887765
Q ss_pred hhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC--CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHH
Q 002375 738 LRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI--KHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSAS 815 (929)
Q Consensus 738 l~~~~~~l~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~--~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 815 (929)
......+|.-|...++++-|...|.+|+.+ .++-.+..+|.+.+..+.+.+|..+|+.++..-+.
T Consensus 380 ----------hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~--- 446 (611)
T KOG1173|consen 380 ----------HLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKS--- 446 (611)
T ss_pred ----------cchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhh---
Confidence 112556777788888888888888888888 45567778888888888888888888887733211
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHH-HHHHHHHHcCCHH
Q 002375 816 AFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLH-LRAAFYESIGDLT 894 (929)
Q Consensus 816 ~~~~lg~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~-~la~~~~~~g~~~ 894 (929)
.....+.....+.++|.++.+.+++++|+..|++++.+.|.++..+ ..|.+|..+|+++
T Consensus 447 --------------------~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld 506 (611)
T KOG1173|consen 447 --------------------VLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLD 506 (611)
T ss_pred --------------------ccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChH
Confidence 1111224566789999999999999999999999999999999888 6799999999999
Q ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHhh
Q 002375 895 SAIRDSQAALCLDPNHMETLDLYNRARDQ 923 (929)
Q Consensus 895 ~A~~~~~~al~l~P~~~~a~~~~~~l~~~ 923 (929)
.|+++|.++|.++|++.-+-.+++..-+.
T Consensus 507 ~Aid~fhKaL~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 507 KAIDHFHKALALKPDNIFISELLKLAIED 535 (611)
T ss_pred HHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 99999999999999999888888776544
No 32
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=6.7e-21 Score=209.63 Aligned_cols=286 Identities=13% Similarity=0.039 Sum_probs=242.4
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccC-CHhHHHHHHHHHHHhccHHHHHHHHHHHHhh
Q 002375 499 EKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLALLAL 577 (929)
Q Consensus 499 ~Ai~~~~~al~l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~~g~~~eA~~~~~~al~~ 577 (929)
+|+..|.+.-...++.......+|..|+++++|++|.+.|+.+-+..| ..+.......++.++.+--+--..-+..+..
T Consensus 337 ~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~ 416 (638)
T KOG1126|consen 337 EALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDT 416 (638)
T ss_pred HHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhh
Confidence 999999997788888899999999999999999999999999988887 3333444455566665555444556778899
Q ss_pred cCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHH
Q 002375 578 ESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQK 657 (929)
Q Consensus 578 ~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~d~~~al~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~ 657 (929)
+|+.+ ..|..+|.++..+++++.|++.+ +++++++|+.+-+|..+|.-+.....++
T Consensus 417 ~~~sP------esWca~GNcfSLQkdh~~Aik~f------------------~RAiQldp~faYayTLlGhE~~~~ee~d 472 (638)
T KOG1126|consen 417 DPNSP------ESWCALGNCFSLQKDHDTAIKCF------------------KRAIQLDPRFAYAYTLLGHESIATEEFD 472 (638)
T ss_pred CCCCc------HHHHHhcchhhhhhHHHHHHHHH------------------HHhhccCCccchhhhhcCChhhhhHHHH
Confidence 99999 88999999999999999995544 9999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHHHHHhcCCCCCChHHHHHHHHHH
Q 002375 658 AAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEA 737 (929)
Q Consensus 658 ~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~l~p~~~a~~~l~~~l~~~~~~~~~~~~a~~~~~~A 737 (929)
.|+.+|++|+..+|.+..+|+.+|.+|.++++++.|.-.|++|+.++|.+
T Consensus 473 ~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~n------------------------------ 522 (638)
T KOG1126|consen 473 KAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSN------------------------------ 522 (638)
T ss_pred hHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccc------------------------------
Confidence 99999999999999999999999999999999999999999999999988
Q ss_pred hhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcCC--ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHH
Q 002375 738 LRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSAS 815 (929)
Q Consensus 738 l~~~~~~l~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~--~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 815 (929)
......+|.++.++|+.++|+..|++|+.++ ++-..+..|.+++..+++++|+..++++-+..|+...
T Consensus 523 ----------svi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~ 592 (638)
T KOG1126|consen 523 ----------SVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESS 592 (638)
T ss_pred ----------hhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHH
Confidence 3446778999999999999999999999884 4567788899999999999999888888777766555
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCch
Q 002375 816 AFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQ 878 (929)
Q Consensus 816 ~~~~lg~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~ 878 (929)
+ +..+|.+|.+.|+.+.|+..|.-|..++|.-.
T Consensus 593 v------------------------------~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~ 625 (638)
T KOG1126|consen 593 V------------------------------FALLGKIYKRLGNTDLALLHFSWALDLDPKGA 625 (638)
T ss_pred H------------------------------HHHHHHHHHHHccchHHHHhhHHHhcCCCccc
Confidence 5 45556666666666666666666666666543
No 33
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.88 E-value=1.1e-19 Score=206.57 Aligned_cols=304 Identities=14% Similarity=0.049 Sum_probs=225.0
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHhcccC-CHhHHHHHHHHHHHhccHHHHHHHHHHHHhhcCCchhhhccccHHHHH
Q 002375 516 FPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLV 594 (929)
Q Consensus 516 ~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~a~~ll 594 (929)
...+.+|..+...|++++|+..|+++++..| ++..+..+|.++...|++++|+..+++++...+... .
T Consensus 36 ~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~-~---------- 104 (389)
T PRK11788 36 SRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTR-E---------- 104 (389)
T ss_pred cHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCH-H----------
Confidence 3455667778888888888888888887777 566777888888888888888888887776321111 0
Q ss_pred HHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchH
Q 002375 595 KLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEH 674 (929)
Q Consensus 595 ~~~~~~~~~~~~A~~~l~l~~~~~~~d~~~al~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~ 674 (929)
.....+..+|.+|...|++++|+..|+++++.+|.+.
T Consensus 105 -------------------------------------------~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~ 141 (389)
T PRK11788 105 -------------------------------------------QRLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFAE 141 (389)
T ss_pred -------------------------------------------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchH
Confidence 0113456778888888888888888888888888778
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch-HHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHH
Q 002375 675 ERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNN 753 (929)
Q Consensus 675 ~~~~~lg~~~~~~g~~~eA~~~~~~al~l~p~~-~a~~~l~~~l~~~~~~~~~~~~a~~~~~~Al~~~~~~l~~~~a~~~ 753 (929)
.++..++.++...|++++|+..++++++..|.. ... ....+..
T Consensus 142 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~------------------------------------~~~~~~~ 185 (389)
T PRK11788 142 GALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE------------------------------------IAHFYCE 185 (389)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH------------------------------------HHHHHHH
Confidence 888888888888888888888888887766544 000 0123566
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHcC--CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCH-HHHHHHh----hcCCH
Q 002375 754 LGSIYVECGKLDQAENCYINALDI--KHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSA-SAFEKRS----EYSDR 826 (929)
Q Consensus 754 lg~~~~~~g~~~eA~~~~~~al~~--~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~lg----~~~~~ 826 (929)
+|.++...|++++|+..|+++++. +...++..+|.++...|++++|++.++++++..|.+. .++..++ ..|++
T Consensus 186 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~ 265 (389)
T PRK11788 186 LAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDE 265 (389)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCH
Confidence 777888888888888888888876 3456778888888888888888888888888777653 3344444 56888
Q ss_pred HHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHH---cCCHHHHHHHHHHH
Q 002375 827 EMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLHLRAAFYES---IGDLTSAIRDSQAA 903 (929)
Q Consensus 827 ~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~la~~~~~---~g~~~~A~~~~~~a 903 (929)
++|+..++++++..|+.. .+..+|.++.+.|++++|+..++++++..|++..+..+...+.. .|+..+|+..+++.
T Consensus 266 ~~A~~~l~~~~~~~p~~~-~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~ 344 (389)
T PRK11788 266 AEGLEFLRRALEEYPGAD-LLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDL 344 (389)
T ss_pred HHHHHHHHHHHHhCCCch-HHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHH
Confidence 888888888888888664 44889999999999999999999999999999877644333332 45888888777766
Q ss_pred h----ccCCCC
Q 002375 904 L----CLDPNH 910 (929)
Q Consensus 904 l----~l~P~~ 910 (929)
+ +.+|++
T Consensus 345 ~~~~~~~~p~~ 355 (389)
T PRK11788 345 VGEQLKRKPRY 355 (389)
T ss_pred HHHHHhCCCCE
Confidence 5 456654
No 34
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.87 E-value=1.3e-18 Score=208.17 Aligned_cols=416 Identities=13% Similarity=-0.044 Sum_probs=300.5
Q ss_pred CcchhhhHHHHHhhhhh--HHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccC-CHhHHHHHHHHH
Q 002375 482 KPTGWMYQERSLYNLGR--EKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLF 558 (929)
Q Consensus 482 ~~~~~~~~~~~l~~~~~--~Ai~~~~~al~l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~ 558 (929)
.+...+.++...+..|+ .|+..|+++++.+|+++.+...++.++...|+.++|+..+++++.-.+ ....+...|.++
T Consensus 33 ~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly 112 (822)
T PRK14574 33 MADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAY 112 (822)
T ss_pred chhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHH
Confidence 45566677777777776 888888888888888864444777777888888888888888882221 222333346688
Q ss_pred HHhccHHHHHHHHHHHHhhcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCC
Q 002375 559 IAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPG 638 (929)
Q Consensus 559 ~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~d~~~al~~~~~al~~~p~ 638 (929)
...|++++|+..|+++++.+|+++ .++..++.++...++.++|...+ .++...+|.
T Consensus 113 ~~~gdyd~Aiely~kaL~~dP~n~------~~l~gLa~~y~~~~q~~eAl~~l------------------~~l~~~dp~ 168 (822)
T PRK14574 113 RNEKRWDQALALWQSSLKKDPTNP------DLISGMIMTQADAGRGGVVLKQA------------------TELAERDPT 168 (822)
T ss_pred HHcCCHHHHHHHHHHHHhhCCCCH------HHHHHHHHHHhhcCCHHHHHHHH------------------HHhcccCcc
Confidence 888888888888888888888887 55566677777778888885555 777777887
Q ss_pred ChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch-HHHH--HHHH
Q 002375 639 KSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFF--LKAY 715 (929)
Q Consensus 639 ~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~l~p~~-~a~~--~l~~ 715 (929)
+... ..++.++...++..+|+..++++++.+|++.+++..+..++.+.|-...|.+...+--...... ..+. ..+.
T Consensus 169 ~~~~-l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a 247 (822)
T PRK14574 169 VQNY-MTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAA 247 (822)
T ss_pred hHHH-HHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHH
Confidence 5444 4555555556777678888888888888888888888888888888888876665422211111 1111 1111
Q ss_pred HHHhcCC-CCCChHHHHHHHHHHhhchhccCc-----h------hHHHHHHHHHHHHcCCHHHHHHHHHHHHcC---CCh
Q 002375 716 ILADTNL-DPESSTYVIQLLEEALRCPSDGLR-----K------GQALNNLGSIYVECGKLDQAENCYINALDI---KHT 780 (929)
Q Consensus 716 ~l~~~~~-~~~~~~~a~~~~~~Al~~~~~~l~-----~------~~a~~~lg~~~~~~g~~~eA~~~~~~al~~---~~~ 780 (929)
...+... ............+.|+..+.+.+. | ..+....-.++...|++.++++.|+..... -|+
T Consensus 248 ~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~ 327 (822)
T PRK14574 248 EQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPD 327 (822)
T ss_pred HHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCH
Confidence 1111111 111111222234445544444332 1 134445556778899999999999988765 367
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHccC------CH----HHHHHHhhcCCHHHHHHHHHHHHhcCC---------
Q 002375 781 RAHQGLARVYYLKNELKAAYDEMTKLLEKAQY------SA----SAFEKRSEYSDREMAKNDLNMATQLDP--------- 841 (929)
Q Consensus 781 ~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~----~~~~~lg~~~~~~~A~~~~~~al~l~p--------- 841 (929)
.+....|..|...+++++|...|.+++...|+ .. ..++..-+.+++++|...+++..+..|
T Consensus 328 y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~ 407 (822)
T PRK14574 328 YARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLP 407 (822)
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCC
Confidence 89999999999999999999999999876532 11 234455588999999999999988544
Q ss_pred ------CCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHH-HHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHH
Q 002375 842 ------LRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLH-LRAAFYESIGDLTSAIRDSQAALCLDPNHMETL 914 (929)
Q Consensus 842 ------~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~-~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~ 914 (929)
+.......++.++...|++.+|++.+++.+...|.++.+. .+|.++...|.+.+|...++.++.++|++..+.
T Consensus 408 ~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~ 487 (822)
T PRK14574 408 GKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILE 487 (822)
T ss_pred CCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHH
Confidence 3345677889999999999999999999999999998777 679999999999999999999999999998887
Q ss_pred HHHHHHHh
Q 002375 915 DLYNRARD 922 (929)
Q Consensus 915 ~~~~~l~~ 922 (929)
..+.....
T Consensus 488 ~~~~~~al 495 (822)
T PRK14574 488 RAQAETAM 495 (822)
T ss_pred HHHHHHHH
Confidence 77666543
No 35
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.87 E-value=1.6e-16 Score=173.00 Aligned_cols=486 Identities=15% Similarity=0.031 Sum_probs=368.6
Q ss_pred hhhhhcccchHHHHHHHHHhhcchHHHHHHHHHHHhhHHHHhcccHHHHHHHHHHHHhcCccccHH--HHHHHHHHhchH
Q 002375 390 VAMEKDRVSNTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGHIYSLA--GLARAKYKVGQQ 467 (929)
Q Consensus 390 ~~~~~~~~~~~~~~~Le~l~~~~~~~~~~a~~~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~~~a--~la~~~~~~g~a 467 (929)
.+.+... ..++..+|++.++|.+.+.....+| .+..-|+.|.+.++++-+.-|..... ..++.--..|..
T Consensus 385 aAVelE~-~~darilL~rAveccp~s~dLwlAl-------arLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~ 456 (913)
T KOG0495|consen 385 AAVELEE-PEDARILLERAVECCPQSMDLWLAL-------ARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNV 456 (913)
T ss_pred HHHhccC-hHHHHHHHHHHHHhccchHHHHHHH-------HHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCH
Confidence 3444432 3348889999999998876544433 34467999999999999986665543 233333334432
Q ss_pred ---HHHHHHHHhhhcCC----CcchhhhHHHHHhhhhh--HHHHHHHHHHhc---CCCChHHHHHHHHHHHHhCCHHHHH
Q 002375 468 ---YSAYKLINSIISEH----KPTGWMYQERSLYNLGR--EKIVDLNYASEL---DPTLSFPYKYRAVAKMEEGQIRAAI 535 (929)
Q Consensus 468 ---~~a~~~~~~l~~~~----~~~~~~~~~~~l~~~~~--~Ai~~~~~al~l---~P~~~~a~~~~a~~~~~~g~~~~A~ 535 (929)
....++...-+... +...|+..+...-..+- ..-......+.+ ..+....|..-+..+.+.+-++-|+
T Consensus 457 ~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~car 536 (913)
T KOG0495|consen 457 DMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECAR 536 (913)
T ss_pred HHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHH
Confidence 22223322222221 23566665555443333 112222333333 2344567888899999999999999
Q ss_pred HHHHHHhcccCCH-hHHHHHHHHHHHhccHHHHHHHHHHHHhhcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhh
Q 002375 536 SEIDRIIVFKLSV-DCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLY 614 (929)
Q Consensus 536 ~~~~~al~~~~~~-~~~~~~a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~ 614 (929)
..|..+++..|.. ..|...+..--..|..++-...+++++...|... ..+.+.+..+...|+...|...+
T Consensus 537 AVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae------~lwlM~ake~w~agdv~~ar~il--- 607 (913)
T KOG0495|consen 537 AVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAE------ILWLMYAKEKWKAGDVPAARVIL--- 607 (913)
T ss_pred HHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcch------hHHHHHHHHHHhcCCcHHHHHHH---
Confidence 9999999888844 4455445555567888888999999999999777 44555555566667777775555
Q ss_pred hccccccccccHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHH
Q 002375 615 DRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEAL 694 (929)
Q Consensus 615 ~~~~~~d~~~al~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~ 694 (929)
.++++.+|++.++|+..-.+.....+++.|...|.++....|. ..+|+.-+.+...+++.++|+
T Consensus 608 ---------------~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgT-eRv~mKs~~~er~ld~~eeA~ 671 (913)
T KOG0495|consen 608 ---------------DQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGT-ERVWMKSANLERYLDNVEEAL 671 (913)
T ss_pred ---------------HHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCc-chhhHHHhHHHHHhhhHHHHH
Confidence 8999999999999999999999999999999999999988777 778888899999999999999
Q ss_pred HHHHHHHhhccch-HHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCch----hHHHHHHHHHHHHcCCHHHHHH
Q 002375 695 SRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRK----GQALNNLGSIYVECGKLDQAEN 769 (929)
Q Consensus 695 ~~~~~al~l~p~~-~a~~~l~~~l~~~~~~~~~~~~a~~~~~~Al~~~~~~l~~----~~a~~~lg~~~~~~g~~~eA~~ 769 (929)
..++++++..|++ ..|..+|.++...+ ..+.|.+.|...++. ...|..++.+-...|+.-.|..
T Consensus 672 rllEe~lk~fp~f~Kl~lmlGQi~e~~~-----------~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ 740 (913)
T KOG0495|consen 672 RLLEEALKSFPDFHKLWLMLGQIEEQME-----------NIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARS 740 (913)
T ss_pred HHHHHHHHhCCchHHHHHHHhHHHHHHH-----------HHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHH
Confidence 9999999999999 88888998888877 888888888888763 3789999999999999999999
Q ss_pred HHHHHHcCC--ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHH
Q 002375 770 CYINALDIK--HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPY 847 (929)
Q Consensus 770 ~~~~al~~~--~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~A~~~~~~al~l~p~~~~~~ 847 (929)
.++++.-.+ +...|....+...+.|+.+.|...+.++++..|++...|...-.+.-...-..-+..|++.-..++.++
T Consensus 741 ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVl 820 (913)
T KOG0495|consen 741 ILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVL 820 (913)
T ss_pred HHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhH
Confidence 999998874 445777777888899999999999999999999999888766522111111233344555556788999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHH-HHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHH
Q 002375 848 RYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLH-LRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNR 919 (929)
Q Consensus 848 ~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~-~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~ 919 (929)
...|.++....++++|.+.|.++++.+|++...+ +.-.++...|.-++-.+.|.+....+|.+.+.|....+
T Consensus 821 laia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~avSK 893 (913)
T KOG0495|consen 821 LAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQAVSK 893 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHHHhh
Confidence 9999999999999999999999999999997655 66778888999999999999999999999998876554
No 36
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.87 E-value=1.9e-17 Score=180.11 Aligned_cols=413 Identities=12% Similarity=0.008 Sum_probs=305.4
Q ss_pred hhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccC-CHhHHHHHHHHHHHhccHHHHHHHHHHHH
Q 002375 497 GREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLALL 575 (929)
Q Consensus 497 ~~~Ai~~~~~al~l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~~g~~~eA~~~~~~al 575 (929)
.+.|+-.+.+|++.-|.+.+.|..++ ++.-|+.|...++++-+.-| ++..|..-+.+--..|+.+.-.+++.+.+
T Consensus 392 ~~darilL~rAveccp~s~dLwlAla----rLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl 467 (913)
T KOG0495|consen 392 PEDARILLERAVECCPQSMDLWLALA----RLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGL 467 (913)
T ss_pred hHHHHHHHHHHHHhccchHHHHHHHH----HHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 33455566666666666655555433 33345556666666655444 55555555555555555555555555554
Q ss_pred hhcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHh-----------hhccccccc--------cccHHHHHHHHhcC
Q 002375 576 ALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKL-----------YDRWSSVDD--------IGSLAVINQMLIND 636 (929)
Q Consensus 576 ~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l-----------~~~~~~~d~--------~~al~~~~~al~~~ 636 (929)
..-..+..-..+ +.+.--+......|..-.+...+.- ...|.+.++ .-+.++|..+++..
T Consensus 468 ~~L~~ngv~i~r-dqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvf 546 (913)
T KOG0495|consen 468 SELQANGVEINR-DQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF 546 (913)
T ss_pred HHHhhcceeecH-HHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc
Confidence 322221100000 1111111111111111111111100 011111100 11267889999999
Q ss_pred CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch-HHHHHHHH
Q 002375 637 PGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAY 715 (929)
Q Consensus 637 p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~l~p~~-~a~~~l~~ 715 (929)
|.+..+|...+.+-...|..+.-...+++++...|.....|.+.+..+...|+...|...+.++++.+|++ +.|+....
T Consensus 547 p~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavK 626 (913)
T KOG0495|consen 547 PCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVK 626 (913)
T ss_pred cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999 88877777
Q ss_pred HHHhcCCCCCChHHHHHHHHHHhhchhccCch---hHHHHHHHHHHHHcCCHHHHHHHHHHHHcC--CChHHHHHHHHHH
Q 002375 716 ILADTNLDPESSTYVIQLLEEALRCPSDGLRK---GQALNNLGSIYVECGKLDQAENCYINALDI--KHTRAHQGLARVY 790 (929)
Q Consensus 716 ~l~~~~~~~~~~~~a~~~~~~Al~~~~~~l~~---~~a~~~lg~~~~~~g~~~eA~~~~~~al~~--~~~~a~~~la~~~ 790 (929)
...... .+++|...+.++... ...|+.-+.....+++.++|+..++++++. .....|..+|.++
T Consensus 627 le~en~-----------e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~ 695 (913)
T KOG0495|consen 627 LEFEND-----------ELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIE 695 (913)
T ss_pred Hhhccc-----------cHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHH
Confidence 666665 677777777776442 378999999999999999999999999998 5567999999999
Q ss_pred HHhCCHHHHHHHHHHHHHHccCCHHHHHHHh----hcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHH
Q 002375 791 YLKNELKAAYDEMTKLLEKAQYSASAFEKRS----EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEE 866 (929)
Q Consensus 791 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg----~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~ 866 (929)
...++.+.|.+.|..-+...|.....|..++ ..|+.-.|...++++.-.+|.++..|.....+-.+.|+.+.|...
T Consensus 696 e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~l 775 (913)
T KOG0495|consen 696 EQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELL 775 (913)
T ss_pred HHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999999999999999999999998 457889999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCchHH-------------------------------HHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHH
Q 002375 867 LSKAIAFKPDLQML-------------------------------HLRAAFYESIGDLTSAIRDSQAALCLDPNHMETLD 915 (929)
Q Consensus 867 l~kal~~~p~~~~~-------------------------------~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~ 915 (929)
..+|++..|++..+ ...|..+....++++|.++|+++++++|++.++|.
T Consensus 776 makALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa 855 (913)
T KOG0495|consen 776 MAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWA 855 (913)
T ss_pred HHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHH
Confidence 99999887765322 12367777788999999999999999999999998
Q ss_pred HHHHHHhhhh
Q 002375 916 LYNRARDQAS 925 (929)
Q Consensus 916 ~~~~l~~~~~ 925 (929)
+.=+...+.+
T Consensus 856 ~fykfel~hG 865 (913)
T KOG0495|consen 856 WFYKFELRHG 865 (913)
T ss_pred HHHHHHHHhC
Confidence 8766654443
No 37
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.86 E-value=2.6e-19 Score=203.48 Aligned_cols=275 Identities=18% Similarity=0.032 Sum_probs=226.0
Q ss_pred cHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 002375 589 SGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARN 668 (929)
Q Consensus 589 ~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~d~~~al~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~ 668 (929)
...+..|..+...|++++|...+ .++++.+|+++.++..+|.++...|++++|+..+++++.
T Consensus 36 ~~~y~~g~~~~~~~~~~~A~~~~------------------~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 97 (389)
T PRK11788 36 SRDYFKGLNFLLNEQPDKAIDLF------------------IEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLS 97 (389)
T ss_pred cHHHHHHHHHHhcCChHHHHHHH------------------HHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhc
Confidence 34445666666777777774444 778888888877888888888888888888888887776
Q ss_pred cCCch----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhcc
Q 002375 669 HSSSE----HERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDG 744 (929)
Q Consensus 669 ~~p~~----~~~~~~lg~~~~~~g~~~eA~~~~~~al~l~p~~~a~~~l~~~l~~~~~~~~~~~~a~~~~~~Al~~~~~~ 744 (929)
..+.. ...+..+|.+|...|++++|+..|+++++..|..
T Consensus 98 ~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~------------------------------------- 140 (389)
T PRK11788 98 RPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFA------------------------------------- 140 (389)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcch-------------------------------------
Confidence 53321 2456777888888888888888888877765544
Q ss_pred CchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCh-------HHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHH
Q 002375 745 LRKGQALNNLGSIYVECGKLDQAENCYINALDIKHT-------RAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAF 817 (929)
Q Consensus 745 l~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~~-------~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 817 (929)
..++..++.++...|++++|++.++++++..+. ..+..+|.++...|++++|...++++++..|++..++
T Consensus 141 ---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 217 (389)
T PRK11788 141 ---EGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRAS 217 (389)
T ss_pred ---HHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHH
Confidence 345788899999999999999999999887321 2566889999999999999999999999999999888
Q ss_pred HHHh----hcCCHHHHHHHHHHHHhcCCCC-cHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHcCC
Q 002375 818 EKRS----EYSDREMAKNDLNMATQLDPLR-TYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLHLRAAFYESIGD 892 (929)
Q Consensus 818 ~~lg----~~~~~~~A~~~~~~al~l~p~~-~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~la~~~~~~g~ 892 (929)
..+| ..|++++|+..+++++..+|.+ ...+..++.+|...|++++|+..++++++..|+...+..++.++...|+
T Consensus 218 ~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~ 297 (389)
T PRK11788 218 ILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEG 297 (389)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCC
Confidence 8887 5799999999999999998866 4667899999999999999999999999999988777788999999999
Q ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 002375 893 LTSAIRDSQAALCLDPNHMETLDLYNRAR 921 (929)
Q Consensus 893 ~~~A~~~~~~al~l~P~~~~a~~~~~~l~ 921 (929)
+++|+..++++++.+|++.....++....
T Consensus 298 ~~~A~~~l~~~l~~~P~~~~~~~l~~~~~ 326 (389)
T PRK11788 298 PEAAQALLREQLRRHPSLRGFHRLLDYHL 326 (389)
T ss_pred HHHHHHHHHHHHHhCcCHHHHHHHHHHhh
Confidence 99999999999999999987776665443
No 38
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.86 E-value=1.9e-17 Score=187.71 Aligned_cols=485 Identities=14% Similarity=0.102 Sum_probs=323.1
Q ss_pred HHHHHhhHHHHhcccHHHHHHHHHHHHhcCccccHH--HHHHHHHHhchHHHHHH---HHHhhhcCCCcchhhhHHHHHh
Q 002375 420 LALHQLGCVMFEREEYKDACYYFEAAADAGHIYSLA--GLARAKYKVGQQYSAYK---LINSIISEHKPTGWMYQERSLY 494 (929)
Q Consensus 420 ~~~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~~~a--~la~~~~~~g~a~~a~~---~~~~l~~~~~~~~~~~~~~~l~ 494 (929)
..+...|+..+.+|++++|+..+..++..+|.+..+ .++.+|-++|+...++. .+..+.|+ ++..|...+....
T Consensus 140 ~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~-d~e~W~~ladls~ 218 (895)
T KOG2076|consen 140 RQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK-DYELWKRLADLSE 218 (895)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHH
Confidence 345668889999999999999999999999998877 89999999998665554 33445555 5588887776655
Q ss_pred hhhh--HHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccCCHhH------HHHHHHHHHHhccHHH
Q 002375 495 NLGR--EKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDC------LELRAWLFIAADDYES 566 (929)
Q Consensus 495 ~~~~--~Ai~~~~~al~l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~------~~~~a~~~~~~g~~~e 566 (929)
..+. +|+-+|.+|++.+|.+....+.++..|.+.|+...|...|.+++.+.|..+. ....+..+...++-+.
T Consensus 219 ~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~ 298 (895)
T KOG2076|consen 219 QLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERER 298 (895)
T ss_pred hcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHH
Confidence 5553 9999999999999999999999999999999999999999999988873222 3334666777788899
Q ss_pred HHHHHHHHHhhcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhc---------c-------------cc-cccc
Q 002375 567 ALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDR---------W-------------SS-VDDI 623 (929)
Q Consensus 567 A~~~~~~al~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~---------~-------------~~-~d~~ 623 (929)
|++.++.++....+-.. ..-+.+++.++....+++.|...+..... | .. .++.
T Consensus 299 a~~~le~~~s~~~~~~~----~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~ 374 (895)
T KOG2076|consen 299 AAKALEGALSKEKDEAS----LEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKEL 374 (895)
T ss_pred HHHHHHHHHhhcccccc----ccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCC
Confidence 99999999883322221 14555677777777777777655533211 0 00 0000
Q ss_pred c-cHHHHHHHHh-------------------cC---CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCch-HHHHHH
Q 002375 624 G-SLAVINQMLI-------------------ND---PGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE-HERLVY 679 (929)
Q Consensus 624 ~-al~~~~~al~-------------------~~---p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~-~~~~~~ 679 (929)
. .|.++..++. .+ .+.+..++.++.+|...|++.+|+.+|..+....+.. ..+|+.
T Consensus 375 s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~ 454 (895)
T KOG2076|consen 375 SYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYK 454 (895)
T ss_pred CccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHH
Confidence 0 0112111111 11 2345667777777777777777777777766655432 556777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhccch-HHHHHHHHHHHhcCCCCCChHHH----------------------------
Q 002375 680 EGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYV---------------------------- 730 (929)
Q Consensus 680 lg~~~~~~g~~~eA~~~~~~al~l~p~~-~a~~~l~~~l~~~~~~~~~~~~a---------------------------- 730 (929)
+|.+|..+|.+++|+..|++++...|++ ++...++..+...|......+..
T Consensus 455 ~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d 534 (895)
T KOG2076|consen 455 LARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCD 534 (895)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHH
Confidence 7777777777777777777777777777 77777766666655111000000
Q ss_pred ----HHHHHHHhh--------------chh---------------------------------------ccCch------
Q 002375 731 ----IQLLEEALR--------------CPS---------------------------------------DGLRK------ 747 (929)
Q Consensus 731 ----~~~~~~Al~--------------~~~---------------------------------------~~l~~------ 747 (929)
.++.++-+. .+. +.+..
T Consensus 535 ~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~ 614 (895)
T KOG2076|consen 535 ILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRA 614 (895)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhh
Confidence 000000000 000 00000
Q ss_pred -------h----HHHHHHHHHHHHcCCHHHHHHHHHHHHcC----CChH----HHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 002375 748 -------G----QALNNLGSIYVECGKLDQAENCYINALDI----KHTR----AHQGLARVYYLKNELKAAYDEMTKLLE 808 (929)
Q Consensus 748 -------~----~a~~~lg~~~~~~g~~~eA~~~~~~al~~----~~~~----a~~~la~~~~~~g~~~~A~~~~~~al~ 808 (929)
. +.+..+...+.+.+++++|......|+.. .++. ..+....+-...+++..|....+..+.
T Consensus 615 ~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~ 694 (895)
T KOG2076|consen 615 VELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVIT 694 (895)
T ss_pred hhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 0 23344556677888889998888888776 2222 223333455677889999888888887
Q ss_pred H-----ccCCHHHHH-HH------h--------------------------------hcCCHHHHHHHHHHHHhcCCCCc
Q 002375 809 K-----AQYSASAFE-KR------S--------------------------------EYSDREMAKNDLNMATQLDPLRT 844 (929)
Q Consensus 809 ~-----~p~~~~~~~-~l------g--------------------------------~~~~~~~A~~~~~~al~l~p~~~ 844 (929)
. +|.....|. .. + ..+.+.-|+..|-++...+|++|
T Consensus 695 ~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~P 774 (895)
T KOG2076|consen 695 QFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSP 774 (895)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCc
Confidence 6 443333333 10 0 12566899999999999999998
Q ss_pred HHHHHHHHHHHh--cC--------CHHHHHHHHHHHHhcCCC---chHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 002375 845 YPYRYRAAVLMD--DQ--------KEVEAVEELSKAIAFKPD---LQMLHLRAAFYESIGDLTSAIRDSQAALCLDPN 909 (929)
Q Consensus 845 ~~~~~la~~~~~--~g--------~~~eA~~~l~kal~~~p~---~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~ 909 (929)
-.-..+|.++.. ++ ..-+++..+.+..++... -...|++|.+|...|=..-|+.+|+++|.+.|.
T Consensus 775 l~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~p~ 852 (895)
T KOG2076|consen 775 LINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVSPK 852 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCCcc
Confidence 887777766543 22 234567777777666544 246779999999999999999999999999764
No 39
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=1.5e-17 Score=172.29 Aligned_cols=376 Identities=15% Similarity=0.076 Sum_probs=288.9
Q ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHhcccCCHhHHHHHHHHH-HHhccHHHHHHHHHHHHhhcCCchhhhccccHHHH
Q 002375 515 SFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLF-IAADDYESALRDTLALLALESNYMMFHGRVSGDHL 593 (929)
Q Consensus 515 ~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~-~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~a~~l 593 (929)
+..-..++..+-..++-.++.-.|...+...| -.+..++... ....-.+.+- .--.+++..|..+ | .....
T Consensus 130 p~inlMla~l~~~g~r~~~~vl~ykevvrecp--~aL~~i~~ll~l~v~g~e~~S-~~m~~~~~~~~~d-w----ls~wi 201 (564)
T KOG1174|consen 130 PRINLMLARLQHHGSRHKEAVLAYKEVIRECP--MALQVIEALLELGVNGNEINS-LVMHAATVPDHFD-W----LSKWI 201 (564)
T ss_pred hhHHHHHHHHHhccccccHHHHhhhHHHHhcc--hHHHHHHHHHHHhhcchhhhh-hhhhheecCCCcc-H----HHHHH
Confidence 44555566666666666566666666663332 2222222221 1111122111 1223344455444 2 12223
Q ss_pred HHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCch
Q 002375 594 VKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE 673 (929)
Q Consensus 594 l~~~~~~~~~~~~A~~~l~l~~~~~~~d~~~al~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~ 673 (929)
.+......+....|.. ..++-.-...-|++..++..+|.+++..|++.+|+..|+++.-++|..
T Consensus 202 ka~Aq~~~~~hs~a~~----------------t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~ 265 (564)
T KOG1174|consen 202 KALAQMFNFKHSDASQ----------------TFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDN 265 (564)
T ss_pred HHHHHHHhcccchhhh----------------HHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhh
Confidence 3334444445554422 223345556678899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch-HHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCch----h
Q 002375 674 HERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRK----G 748 (929)
Q Consensus 674 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~l~p~~-~a~~~l~~~l~~~~~~~~~~~~a~~~~~~Al~~~~~~l~~----~ 748 (929)
....-..|.++...|+++.-.......+...... .-|+--+..+.... +++.|+..-.+.++. .
T Consensus 266 i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K-----------~~~rAL~~~eK~I~~~~r~~ 334 (564)
T KOG1174|consen 266 VEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEK-----------KFERALNFVEKCIDSEPRNH 334 (564)
T ss_pred hhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhh-----------hHHHHHHHHHHHhccCcccc
Confidence 9999999999999999998888888888877555 56666665555554 777777777777652 3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCh--HHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHh-----
Q 002375 749 QALNNLGSIYVECGKLDQAENCYINALDIKHT--RAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS----- 821 (929)
Q Consensus 749 ~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~~--~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg----- 821 (929)
+++...|.++..+|+.++|+-.|..|+.+.|. +.|.+|-.+|...|.+.+|.-..+.++...|+++..+...|
T Consensus 335 ~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~ 414 (564)
T KOG1174|consen 335 EALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLF 414 (564)
T ss_pred hHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeec
Confidence 88999999999999999999999999999654 68999999999999999999999999999999999988887
Q ss_pred -hcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHcCCHHHHHHHH
Q 002375 822 -EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLHLRAAFYESIGDLTSAIRDS 900 (929)
Q Consensus 822 -~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~la~~~~~~g~~~~A~~~~ 900 (929)
.-.-.++|...++++++++|....+-..+|.++...|++++++..+++.+...|+......+|.++...+.+.+|..+|
T Consensus 415 ~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y 494 (564)
T KOG1174|consen 415 PDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYY 494 (564)
T ss_pred cCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHH
Confidence 1234589999999999999999999999999999999999999999999999999887778999999999999999999
Q ss_pred HHHhccCCCCHHHHHHHHHHHhhhh
Q 002375 901 QAALCLDPNHMETLDLYNRARDQAS 925 (929)
Q Consensus 901 ~~al~l~P~~~~a~~~~~~l~~~~~ 925 (929)
..||.+||++..++..+.++++...
T Consensus 495 ~~ALr~dP~~~~sl~Gl~~lEK~~~ 519 (564)
T KOG1174|consen 495 YKALRQDPKSKRTLRGLRLLEKSDD 519 (564)
T ss_pred HHHHhcCccchHHHHHHHHHHhccC
Confidence 9999999999999999999987654
No 40
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.85 E-value=3.1e-18 Score=173.24 Aligned_cols=359 Identities=17% Similarity=0.131 Sum_probs=271.4
Q ss_pred HHHHHHHHhhHHHHhcccHHHHHHHHHHHHhcCccccHHHHHHHHHHhchHHHHHHHHHhhhcCCCcchhhhHHHHHhhh
Q 002375 417 QRMLALHQLGCVMFEREEYKDACYYFEAAADAGHIYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNL 496 (929)
Q Consensus 417 ~~a~~~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~~~a~la~~~~~~g~a~~a~~~~~~l~~~~~~~~~~~~~~~l~~~ 496 (929)
....-.+.+|..++.+|++.+|+..|..|++.+|++.. ++++++..+.+++ .
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~-----aifrRaT~yLAmG-----------------------k 87 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQ-----AIFRRATVYLAMG-----------------------K 87 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHH-----HHHHHHHHHhhhc-----------------------C
Confidence 34556789999999999999999999999999999877 6777776666655 4
Q ss_pred hhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccCCH----hH------------HHHHHHHHHH
Q 002375 497 GREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSV----DC------------LELRAWLFIA 560 (929)
Q Consensus 497 ~~~Ai~~~~~al~l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~----~~------------~~~~a~~~~~ 560 (929)
.+.|+.++.+++++.|+...+...+|.+++++|++++|...|+.+++.+|+. +. +......+..
T Consensus 88 sk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~ 167 (504)
T KOG0624|consen 88 SKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASG 167 (504)
T ss_pred CccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhc
Confidence 5588999999999999999999999999999999999999999999877722 12 1222333456
Q ss_pred hccHHHHHHHHHHHHhhcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCCh
Q 002375 561 ADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKS 640 (929)
Q Consensus 561 ~g~~~eA~~~~~~al~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~d~~~al~~~~~al~~~p~~~ 640 (929)
.|++..|+.....++++.|-+. ......+.+|...|....|+.-+ ..+-++..++.
T Consensus 168 ~GD~~~ai~~i~~llEi~~Wda------~l~~~Rakc~i~~~e~k~AI~Dl------------------k~askLs~DnT 223 (504)
T KOG0624|consen 168 SGDCQNAIEMITHLLEIQPWDA------SLRQARAKCYIAEGEPKKAIHDL------------------KQASKLSQDNT 223 (504)
T ss_pred CCchhhHHHHHHHHHhcCcchh------HHHHHHHHHHHhcCcHHHHHHHH------------------HHHHhccccch
Confidence 7999999999999999999998 66777889999988888884444 88888899999
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHhhccch-
Q 002375 641 FLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYE------------GWILYDTGHREEALSRAEKSISIERTF- 707 (929)
Q Consensus 641 ~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~l------------g~~~~~~g~~~eA~~~~~~al~l~p~~- 707 (929)
+.++.++.+++..|+.+.++...+..++++|++...+-.+ +.-....++|.++++..++.++.+|..
T Consensus 224 e~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~ 303 (504)
T KOG0624|consen 224 EGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEET 303 (504)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCccc
Confidence 9999999999999999999999999999999975433211 333455667777777777777766653
Q ss_pred HHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcCC--ChHHHHH
Q 002375 708 EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQG 785 (929)
Q Consensus 708 ~a~~~l~~~l~~~~~~~~~~~~a~~~~~~Al~~~~~~l~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~--~~~a~~~ 785 (929)
... -..+..+..++...|++.+|+....+++.++ +.+++..
T Consensus 304 ~ir-------------------------------------~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~d 346 (504)
T KOG0624|consen 304 MIR-------------------------------------YNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCD 346 (504)
T ss_pred cee-------------------------------------eeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHH
Confidence 100 1223445667778889999999999999984 4568888
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHH
Q 002375 786 LARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVE 865 (929)
Q Consensus 786 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~ 865 (929)
.|.+|.....|+.|+..|+++.+.++++..+...+ +.|....+++- .-+.|..||. - +.-.-.+-.+
T Consensus 347 RAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGl------e~Akrlkkqs~-----kRDYYKILGV-k-RnAsKqEI~K 413 (504)
T KOG0624|consen 347 RAEAYLGDEMYDDAIHDYEKALELNESNTRAREGL------ERAKRLKKQSG-----KRDYYKILGV-K-RNASKQEITK 413 (504)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHH------HHHHHHHHHhc-----cchHHHHhhh-c-ccccHHHHHH
Confidence 89999988999999999999999998887664433 33333332222 2233444442 1 2223345555
Q ss_pred HHHHH-HhcCCCc
Q 002375 866 ELSKA-IAFKPDL 877 (929)
Q Consensus 866 ~l~ka-l~~~p~~ 877 (929)
.|+++ .+..|++
T Consensus 414 AYRKlAqkWHPDN 426 (504)
T KOG0624|consen 414 AYRKLAQKWHPDN 426 (504)
T ss_pred HHHHHHHhcCCcc
Confidence 66654 4567766
No 41
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.83 E-value=4.1e-17 Score=181.95 Aligned_cols=424 Identities=14% Similarity=0.041 Sum_probs=293.2
Q ss_pred HHHHHHHhhHHHHhcccHHHHHHHHHHHHhcCccccHHHHHHHHHHhchHHHHHHHHHhhhcCCCcchhhhHHHHHhhhh
Q 002375 418 RMLALHQLGCVMFEREEYKDACYYFEAAADAGHIYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNLG 497 (929)
Q Consensus 418 ~a~~~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~~~a~la~~~~~~g~a~~a~~~~~~l~~~~~~~~~~~~~~~l~~~~ 497 (929)
.+..|-.+.......|+|+.+.+.|++++...-.. ...|...+.++...+
T Consensus 322 d~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~------------------------------~e~w~~~als~saag 371 (799)
T KOG4162|consen 322 DAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGE------------------------------HERWYQLALSYSAAG 371 (799)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhh------------------------------HHHHHHHHHHHHHhc
Confidence 44566677777888899999999999887541111 112333333333333
Q ss_pred h--HHHHHHHHHHhcC--CCChHHHHHHHHHH-HHhCCHHHHHHHHHHHhcccC------CHhHHHHHHHHHHH------
Q 002375 498 R--EKIVDLNYASELD--PTLSFPYKYRAVAK-MEEGQIRAAISEIDRIIVFKL------SVDCLELRAWLFIA------ 560 (929)
Q Consensus 498 ~--~Ai~~~~~al~l~--P~~~~a~~~~a~~~-~~~g~~~~A~~~~~~al~~~~------~~~~~~~~a~~~~~------ 560 (929)
. .|+..+++.+... |.++..++..+.++ ...+.+++++.+..+++..-. .|.++...|.+|-.
T Consensus 372 ~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~ 451 (799)
T KOG4162|consen 372 SDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQAN 451 (799)
T ss_pred cchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCC
Confidence 3 7888888888887 87787777666554 567899999999999986222 45567777777732
Q ss_pred -----hccHHHHHHHHHHHHhhcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhc
Q 002375 561 -----ADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLIN 635 (929)
Q Consensus 561 -----~g~~~eA~~~~~~al~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~d~~~al~~~~~al~~ 635 (929)
.....+++..++++++.+|+|+ .+.+.++.-|...++.+.|.... .++++.
T Consensus 452 ~~seR~~~h~kslqale~av~~d~~dp------~~if~lalq~A~~R~l~sAl~~~------------------~eaL~l 507 (799)
T KOG4162|consen 452 LKSERDALHKKSLQALEEAVQFDPTDP------LVIFYLALQYAEQRQLTSALDYA------------------REALAL 507 (799)
T ss_pred ChHHHHHHHHHHHHHHHHHHhcCCCCc------hHHHHHHHHHHHHHhHHHHHHHH------------------HHHHHh
Confidence 2345677888888888888888 67777777777777777775555 777777
Q ss_pred -CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch-HHHHHH
Q 002375 636 -DPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLK 713 (929)
Q Consensus 636 -~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~l~p~~-~a~~~l 713 (929)
..+++.+|..++.++...+++.+|+...+.+++..|+|.........+-...|+.++|+......+.+-..- .+-..+
T Consensus 508 ~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~ 587 (799)
T KOG4162|consen 508 NRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTL 587 (799)
T ss_pred cCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhh
Confidence 445677788888888888888888888888888888877777777777777788888888777776643322 111100
Q ss_pred H--HHHH---hcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC-CCh-------
Q 002375 714 A--YILA---DTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI-KHT------- 780 (929)
Q Consensus 714 ~--~~l~---~~~~~~~~~~~a~~~~~~Al~~~~~~l~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~-~~~------- 780 (929)
+ .... ..+..++....++.....+ ..+...-...-.++.. +.+.... ++.
T Consensus 588 ~~g~~~~lk~~l~la~~q~~~a~s~sr~l--------------s~l~a~~~~~~~se~~---Lp~s~~~~~~~~~~~~~~ 650 (799)
T KOG4162|consen 588 DEGKLLRLKAGLHLALSQPTDAISTSRYL--------------SSLVASQLKSAGSELK---LPSSTVLPGPDSLWYLLQ 650 (799)
T ss_pred hhhhhhhhhcccccCcccccccchhhHHH--------------HHHHHhhhhhcccccc---cCcccccCCCCchHHHHH
Confidence 0 0000 0000011111111111110 0010000000011111 1111111 111
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHh----hcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHh
Q 002375 781 RAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS----EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMD 856 (929)
Q Consensus 781 ~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg----~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~ 856 (929)
..|...+..+...++.++|...+.++-.+.|-.+..|+.+| ..|++.+|.+.|..|+.++|+.+.....+|.++.+
T Consensus 651 ~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle 730 (799)
T KOG4162|consen 651 KLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLE 730 (799)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 36778888999999999999999999999999999999998 56899999999999999999999999999999999
Q ss_pred cCCHHHHHH--HHHHHHhcCCCchH-HHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHH
Q 002375 857 DQKEVEAVE--ELSKAIAFKPDLQM-LHLRAAFYESIGDLTSAIRDSQAALCLDPNHME 912 (929)
Q Consensus 857 ~g~~~eA~~--~l~kal~~~p~~~~-~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~ 912 (929)
.|+..-|.. .+..+++++|.++. |+.+|.++.+.|+.++|.+.|..|+++++.+|-
T Consensus 731 ~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 731 LGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred hCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 998888887 99999999998875 558899999999999999999999999988763
No 42
>PLN03077 Protein ECB2; Provisional
Probab=99.83 E-value=6.8e-17 Score=201.64 Aligned_cols=452 Identities=12% Similarity=-0.002 Sum_probs=299.2
Q ss_pred hhHHHHhcccHHHHHHHHHHHHhcCccccHHHHHHHHHHhchHHHHHHHHHhhhcC-CCcch--hhh--HHHHHhhhhhH
Q 002375 425 LGCVMFEREEYKDACYYFEAAADAGHIYSLAGLARAKYKVGQQYSAYKLINSIISE-HKPTG--WMY--QERSLYNLGRE 499 (929)
Q Consensus 425 lG~~~~~~g~y~~A~~~f~~al~~~~~~~~a~la~~~~~~g~a~~a~~~~~~l~~~-~~~~~--~~~--~~~~l~~~~~~ 499 (929)
+-..|.+.|++++|...|++....+. ..+..+...|.+.|...++++........ ..|+. +.. .+.......+.
T Consensus 228 Li~~y~k~g~~~~A~~lf~~m~~~d~-~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~ 306 (857)
T PLN03077 228 LITMYVKCGDVVSARLVFDRMPRRDC-ISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERL 306 (857)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCCc-chhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHH
Confidence 34445555666666666655433222 22334445555555444333333222211 11111 111 11112222335
Q ss_pred HHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccCCHhHHHHHHHHHHHhccHHHHHHHHHHHHhh-
Q 002375 500 KIVDLNYASELD-PTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLAL- 577 (929)
Q Consensus 500 Ai~~~~~al~l~-P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~al~~- 577 (929)
|.+.+..+.+.. +.+...|..+...|.+.|++++|...|++.. .++...|..+...|.+.|++++|+..|++..+.
T Consensus 307 a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~--~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g 384 (857)
T PLN03077 307 GREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME--TKDAVSWTAMISGYEKNGLPDKALETYALMEQDN 384 (857)
T ss_pred HHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC--CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhC
Confidence 566666655542 3356778888888999999999999999875 456667888888999999999999999987654
Q ss_pred -cCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCC-CChHHHHHHHHHHHHhcC
Q 002375 578 -ESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDP-GKSFLRFRQSLLLLRLNC 655 (929)
Q Consensus 578 -~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~d~~~al~~~~~al~~~p-~~~~~~~~lg~~~~~~g~ 655 (929)
.|+...+ ..+-..+...|+++.|.... ..+.+... .+..++..+...|.+.|+
T Consensus 385 ~~Pd~~t~-------~~ll~a~~~~g~~~~a~~l~------------------~~~~~~g~~~~~~~~n~Li~~y~k~g~ 439 (857)
T PLN03077 385 VSPDEITI-------ASVLSACACLGDLDVGVKLH------------------ELAERKGLISYVVVANALIEMYSKCKC 439 (857)
T ss_pred CCCCceeH-------HHHHHHHhccchHHHHHHHH------------------HHHHHhCCCcchHHHHHHHHHHHHcCC
Confidence 3555422 22333556677777775555 55555532 345677788888999999
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-ccchHHHHHHHHHHHhcCCCCCChHHHHHHH
Q 002375 656 QKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISI-ERTFEAFFLKAYILADTNLDPESSTYVIQLL 734 (929)
Q Consensus 656 ~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~l-~p~~~a~~~l~~~l~~~~~~~~~~~~a~~~~ 734 (929)
+++|.+.|++..+ .+...|..+...|.+.|+.++|+..|+++... .|+...+..+..++...+ .+
T Consensus 440 ~~~A~~vf~~m~~---~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g-----------~l 505 (857)
T PLN03077 440 IDKALEVFHNIPE---KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIG-----------AL 505 (857)
T ss_pred HHHHHHHHHhCCC---CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhc-----------hH
Confidence 9999999987643 34567888888899999999999999888753 454466666666666665 45
Q ss_pred HHHhhchhccCch-----hHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 002375 735 EEALRCPSDGLRK-----GQALNNLGSIYVECGKLDQAENCYINALDIKHTRAHQGLARVYYLKNELKAAYDEMTKLLEK 809 (929)
Q Consensus 735 ~~Al~~~~~~l~~-----~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~ 809 (929)
+.+.+.+...++. ...++.+-..|.+.|++++|...|+.. ..+..+|..+...|...|+.++|++.|+++.+.
T Consensus 506 ~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~ 583 (857)
T PLN03077 506 MCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVES 583 (857)
T ss_pred HHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 5555444443321 245566778888888888888888876 445667888888888888888888888887763
Q ss_pred --ccCCHHHHHH---HhhcCCHHHHHHHHHHHHhcCC--CCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHH
Q 002375 810 --AQYSASAFEK---RSEYSDREMAKNDLNMATQLDP--LRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLHL 882 (929)
Q Consensus 810 --~p~~~~~~~~---lg~~~~~~~A~~~~~~al~l~p--~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~ 882 (929)
.|+....... .+..|..++|...|+...+..+ -+...|..+..++.+.|++++|.+.+++. ...|+...|..
T Consensus 584 g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd~~~~~a 662 (857)
T PLN03077 584 GVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-PITPDPAVWGA 662 (857)
T ss_pred CCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCCHHHHHH
Confidence 3554432222 2266888888888888774332 24467788888888888888888888775 46677666665
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 002375 883 RAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNRAR 921 (929)
Q Consensus 883 la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~l~ 921 (929)
+-..+...|+.+.|....+++++++|++...+..+..+.
T Consensus 663 Ll~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~y 701 (857)
T PLN03077 663 LLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLY 701 (857)
T ss_pred HHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHH
Confidence 544566788888888888888888888887777766554
No 43
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=1.4e-17 Score=179.34 Aligned_cols=382 Identities=17% Similarity=0.168 Sum_probs=261.8
Q ss_pred HHHHhhhhh--HHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccC-CHhHHHHHHHHHHHhccHHH
Q 002375 490 ERSLYNLGR--EKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYES 566 (929)
Q Consensus 490 ~~~l~~~~~--~Ai~~~~~al~l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~~g~~~e 566 (929)
|...+..++ .|+..|..||.++|.+...|.++..+|..+|+|++|+..-.+.++++| -+..|...|..+.-+|+|++
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~e 88 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEE 88 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHH
Confidence 344444444 999999999999999999999999999999999999999999999998 66779999999999999999
Q ss_pred HHHHHHHHHhhcCCchhhhccccHHHHHHHHH----HhhcccchHHHHHHhhhccccccccccHHHHHHH---HhcCCCC
Q 002375 567 ALRDTLALLALESNYMMFHGRVSGDHLVKLLN----HHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQM---LINDPGK 639 (929)
Q Consensus 567 A~~~~~~al~~~p~~~~~~~~~~a~~ll~~~~----~~~~~~~~A~~~l~l~~~~~~~d~~~al~~~~~a---l~~~p~~ 639 (929)
|+..|.+.|+.+|++... ...+..++ .....+....-|..+... .......+-.+|... +..+|.+
T Consensus 89 A~~ay~~GL~~d~~n~~L------~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~-p~t~~~~~~~~~~~~l~~~~~~p~~ 161 (539)
T KOG0548|consen 89 AILAYSEGLEKDPSNKQL------KTGLAQAYLEDYAADQLFTKPYFHEKLANL-PLTNYSLSDPAYVKILEIIQKNPTS 161 (539)
T ss_pred HHHHHHHHhhcCCchHHH------HHhHHHhhhHHHHhhhhccCcHHHHHhhcC-hhhhhhhccHHHHHHHHHhhcCcHh
Confidence 999999999999999932 22233333 111111111111111000 000000111223333 3334433
Q ss_pred hHHHHHHHHHHHHhcCHHHHH--HHHHHHH-----hcCC------------c---------hHHHHHHHHHHHHHcCCHH
Q 002375 640 SFLRFRQSLLLLRLNCQKAAM--RCLRLAR-----NHSS------------S---------EHERLVYEGWILYDTGHRE 691 (929)
Q Consensus 640 ~~~~~~lg~~~~~~g~~~~A~--~~l~~al-----~~~p------------~---------~~~~~~~lg~~~~~~g~~~ 691 (929)
...+..--.+....|.....- ..+.... ...| + .+.....+|...++..+++
T Consensus 162 l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~ 241 (539)
T KOG0548|consen 162 LKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFE 241 (539)
T ss_pred hhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHH
Confidence 332222111111111000000 0000000 0011 0 1223456788888888888
Q ss_pred HHHHHHHHHHhhccchHHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHH
Q 002375 692 EALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCY 771 (929)
Q Consensus 692 eA~~~~~~al~l~p~~~a~~~l~~~l~~~~~~~~~~~~a~~~~~~Al~~~~~~l~~~~a~~~lg~~~~~~g~~~eA~~~~ 771 (929)
.|++.|..++.++ .. ...+.+.+.+|...|.+.+.+...
T Consensus 242 ~a~q~y~~a~el~-~~----------------------------------------it~~~n~aA~~~e~~~~~~c~~~c 280 (539)
T KOG0548|consen 242 TAIQHYAKALELA-TD----------------------------------------ITYLNNIAAVYLERGKYAECIELC 280 (539)
T ss_pred HHHHHHHHHHhHh-hh----------------------------------------hHHHHHHHHHHHhccHHHHhhcch
Confidence 8888888888876 43 123556666677777777777666
Q ss_pred HHHHcCC-Ch--------HHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHhhcCCHHHHHHHHHHHHhcCCC
Q 002375 772 INALDIK-HT--------RAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPL 842 (929)
Q Consensus 772 ~~al~~~-~~--------~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~A~~~~~~al~l~p~ 842 (929)
..+++.+ .. .+...+|..|...++++.|+.+|.+++..... +.... .....++++...+...-++|.
T Consensus 281 ~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt-~~~ls---~lk~~Ek~~k~~e~~a~~~pe 356 (539)
T KOG0548|consen 281 EKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRT-PDLLS---KLKEAEKALKEAERKAYINPE 356 (539)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC-HHHHH---HHHHHHHHHHHHHHHHhhChh
Confidence 6666652 11 23445777899999999999999998876544 22222 234557788888888888898
Q ss_pred CcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHH-HHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 002375 843 RTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLH-LRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNRAR 921 (929)
Q Consensus 843 ~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~-~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~l~ 921 (929)
-..--...|..++..|+|..|+..|.++|..+|+++.+| ++|.+|.++|++..|+.+.+++++++|++..++...+.+.
T Consensus 357 ~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al 436 (539)
T KOG0548|consen 357 KAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAAL 436 (539)
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Confidence 888888899999999999999999999999999999988 8999999999999999999999999999999888777665
Q ss_pred hh
Q 002375 922 DQ 923 (929)
Q Consensus 922 ~~ 923 (929)
..
T Consensus 437 ~~ 438 (539)
T KOG0548|consen 437 RA 438 (539)
T ss_pred HH
Confidence 44
No 44
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.81 E-value=3.4e-16 Score=190.74 Aligned_cols=442 Identities=10% Similarity=-0.036 Sum_probs=315.6
Q ss_pred HHHhhHHHHhcccHHHHHHHHHHHHhcCccc----cHHHHHHHHHHhchHH---HHHHHHHhhhcCCCcchhhhHHHHHh
Q 002375 422 LHQLGCVMFEREEYKDACYYFEAAADAGHIY----SLAGLARAKYKVGQQY---SAYKLINSIISEHKPTGWMYQERSLY 494 (929)
Q Consensus 422 ~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~----~~a~la~~~~~~g~a~---~a~~~~~~l~~~~~~~~~~~~~~~l~ 494 (929)
+..+-..+...|++++|+..|+.+....+.. ....+..++...+... ..+..+...-...+...+......+.
T Consensus 90 ~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~ 169 (697)
T PLN03081 90 LCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHV 169 (697)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHh
Confidence 3344556777899999999999887654321 1224444444444432 22222222111112222323333333
Q ss_pred hhhh--HHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccC--CHhHHHHHHHHHHHhccHHHHHHH
Q 002375 495 NLGR--EKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL--SVDCLELRAWLFIAADDYESALRD 570 (929)
Q Consensus 495 ~~~~--~Ai~~~~~al~l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~a~~~~~~g~~~eA~~~ 570 (929)
..++ +|...|++..+ | +...|..+...|.+.|++++|+..|+++.+... ++..+......+...|+.+.+...
T Consensus 170 k~g~~~~A~~lf~~m~~--~-~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l 246 (697)
T PLN03081 170 KCGMLIDARRLFDEMPE--R-NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQL 246 (697)
T ss_pred cCCCHHHHHHHHhcCCC--C-CeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHH
Confidence 3333 66777766543 2 455677777777777888888887777765443 334455555666667777777777
Q ss_pred HHHHHhhcCC-chhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHH
Q 002375 571 TLALLALESN-YMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLL 649 (929)
Q Consensus 571 ~~~al~~~p~-~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~d~~~al~~~~~al~~~p~~~~~~~~lg~~ 649 (929)
+..+++..-. +. ..+..+...|...|++++|...+ +++ .+.+...|..+...
T Consensus 247 ~~~~~~~g~~~d~------~~~n~Li~~y~k~g~~~~A~~vf------------------~~m---~~~~~vt~n~li~~ 299 (697)
T PLN03081 247 HCCVLKTGVVGDT------FVSCALIDMYSKCGDIEDARCVF------------------DGM---PEKTTVAWNSMLAG 299 (697)
T ss_pred HHHHHHhCCCccc------eeHHHHHHHHHHCCCHHHHHHHH------------------HhC---CCCChhHHHHHHHH
Confidence 6666554311 12 34445667777888888885554 333 34577889999999
Q ss_pred HHHhcCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--cchHHHHHHHHHHHhcCCCCCC
Q 002375 650 LLRLNCQKAAMRCLRLARNHS-SSEHERLVYEGWILYDTGHREEALSRAEKSISIE--RTFEAFFLKAYILADTNLDPES 726 (929)
Q Consensus 650 ~~~~g~~~~A~~~l~~al~~~-p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~l~--p~~~a~~~l~~~l~~~~~~~~~ 726 (929)
|.+.|++++|+..|++..+.. .-+...+..+..++.+.|++++|.+.+..+++.. |+...+..+...|...|
T Consensus 300 y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G----- 374 (697)
T PLN03081 300 YALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWG----- 374 (697)
T ss_pred HHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCC-----
Confidence 999999999999999987643 2236688889999999999999999999998875 33377788888888888
Q ss_pred hHHHHHHHHHHhhchhccCchh-HHHHHHHHHHHHcCCHHHHHHHHHHHHcC---CChHHHHHHHHHHHHhCCHHHHHHH
Q 002375 727 STYVIQLLEEALRCPSDGLRKG-QALNNLGSIYVECGKLDQAENCYINALDI---KHTRAHQGLARVYYLKNELKAAYDE 802 (929)
Q Consensus 727 ~~~a~~~~~~Al~~~~~~l~~~-~a~~~lg~~~~~~g~~~eA~~~~~~al~~---~~~~a~~~la~~~~~~g~~~~A~~~ 802 (929)
.+++|.+.|.+..++. ..|+.+...|...|+.++|++.|+++.+. .+..++..+...+...|..++|.+.
T Consensus 375 ------~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~ 448 (697)
T PLN03081 375 ------RMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEI 448 (697)
T ss_pred ------CHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHH
Confidence 8888988888877654 78999999999999999999999998876 2345788888999999999999999
Q ss_pred HHHHHHHccCCH--HHH----HHHhhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 002375 803 MTKLLEKAQYSA--SAF----EKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPD 876 (929)
Q Consensus 803 ~~~al~~~p~~~--~~~----~~lg~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~ 876 (929)
|+.+.+..+-.+ ..| ..++..|+.++|.+.+++. ...| +...|..+...+...|+.+.|...+++.+++.|+
T Consensus 449 f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~ 526 (697)
T PLN03081 449 FQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA-PFKP-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPE 526 (697)
T ss_pred HHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCC
Confidence 999987533222 222 3344789999999998764 3344 5667999999999999999999999999999998
Q ss_pred chHHH-HHHHHHHHcCCHHHHHHHHHHHhcc
Q 002375 877 LQMLH-LRAAFYESIGDLTSAIRDSQAALCL 906 (929)
Q Consensus 877 ~~~~~-~la~~~~~~g~~~~A~~~~~~al~l 906 (929)
+...| .++.+|.+.|++++|.+.++...+.
T Consensus 527 ~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 527 KLNNYVVLLNLYNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred CCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 76444 7799999999999999999877654
No 45
>PLN03077 Protein ECB2; Provisional
Probab=99.79 E-value=1.8e-15 Score=188.99 Aligned_cols=443 Identities=9% Similarity=-0.067 Sum_probs=337.2
Q ss_pred HHHHhhHHHHhcccHHHHHHHHHHHHhc--CccccHH-HHHHHHHHhchHHHH---HHHHHhhhcCCCcchhhhHHHHHh
Q 002375 421 ALHQLGCVMFEREEYKDACYYFEAAADA--GHIYSLA-GLARAKYKVGQQYSA---YKLINSIISEHKPTGWMYQERSLY 494 (929)
Q Consensus 421 ~~~~lG~~~~~~g~y~~A~~~f~~al~~--~~~~~~a-~la~~~~~~g~a~~a---~~~~~~l~~~~~~~~~~~~~~~l~ 494 (929)
.|..+-..|.+.|++++|+..|+++.+. .|+.... .+...+.+.|....+ +..+.+.--..+...+...-..+.
T Consensus 255 s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~ 334 (857)
T PLN03077 255 SWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYL 334 (857)
T ss_pred hhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHH
Confidence 4566777899999999999999999887 3443322 455555566553333 333322221222233333334444
Q ss_pred hhhh--HHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhccc--CCHhHHHHHHHHHHHhccHHHHHHH
Q 002375 495 NLGR--EKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFK--LSVDCLELRAWLFIAADDYESALRD 570 (929)
Q Consensus 495 ~~~~--~Ai~~~~~al~l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~a~~~~~~g~~~eA~~~ 570 (929)
..++ +|...|++.. ..+...|..+...|.+.|++++|+..|++..+.. |+...+...-..+...|++++|...
T Consensus 335 k~g~~~~A~~vf~~m~---~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l 411 (857)
T PLN03077 335 SLGSWGEAEKVFSRME---TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKL 411 (857)
T ss_pred hcCCHHHHHHHHhhCC---CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHH
Confidence 4444 8888888754 3456789999999999999999999999886544 4555577777788899999999999
Q ss_pred HHHHHhhcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHH
Q 002375 571 TLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLL 650 (929)
Q Consensus 571 ~~~al~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~d~~~al~~~~~al~~~p~~~~~~~~lg~~~ 650 (929)
+..+.+...... ...+..+...|...|++++|...+ +++. ..+...|..+...|
T Consensus 412 ~~~~~~~g~~~~-----~~~~n~Li~~y~k~g~~~~A~~vf------------------~~m~---~~d~vs~~~mi~~~ 465 (857)
T PLN03077 412 HELAERKGLISY-----VVVANALIEMYSKCKCIDKALEVF------------------HNIP---EKDVISWTSIIAGL 465 (857)
T ss_pred HHHHHHhCCCcc-----hHHHHHHHHHHHHcCCHHHHHHHH------------------HhCC---CCCeeeHHHHHHHH
Confidence 999987654322 134556777888999999996555 4433 23567889999999
Q ss_pred HHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch--HHHHHHHHHHHhcCCCCCChH
Q 002375 651 LRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF--EAFFLKAYILADTNLDPESST 728 (929)
Q Consensus 651 ~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~l~p~~--~a~~~l~~~l~~~~~~~~~~~ 728 (929)
...|+.++|+..|+++....+.+...+..+-..+.+.|+.+++.+.+..+++..-.. .....+...|.+.|
T Consensus 466 ~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G------- 538 (857)
T PLN03077 466 RLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCG------- 538 (857)
T ss_pred HHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcC-------
Confidence 999999999999999987655567777778888999999999999999988765333 45566777777877
Q ss_pred HHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC--C-ChHHHHHHHHHHHHhCCHHHHHHHHHH
Q 002375 729 YVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI--K-HTRAHQGLARVYYLKNELKAAYDEMTK 805 (929)
Q Consensus 729 ~a~~~~~~Al~~~~~~l~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~--~-~~~a~~~la~~~~~~g~~~~A~~~~~~ 805 (929)
.+++|.+.+.........|+.+...|...|+.++|++.|+++.+. . +..++..+-..+...|+.++|.+.|+.
T Consensus 539 ----~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~ 614 (857)
T PLN03077 539 ----RMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHS 614 (857)
T ss_pred ----CHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHH
Confidence 788888888877334588999999999999999999999999876 2 334677777889999999999999999
Q ss_pred HHHHccCC--HHHHHH----HhhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchH
Q 002375 806 LLEKAQYS--ASAFEK----RSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQM 879 (929)
Q Consensus 806 al~~~p~~--~~~~~~----lg~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~ 879 (929)
+.+..+-. ...|.. ++..|+.++|.+.+++. ...| ++..|..+-..+...|+.+.|....++++++.|++..
T Consensus 615 M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p-d~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~ 692 (857)
T PLN03077 615 MEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-PITP-DPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVG 692 (857)
T ss_pred HHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcc
Confidence 98654332 233333 33789999999999885 4556 4677888888888899999999999999999999987
Q ss_pred HH-HHHHHHHHcCCHHHHHHHHHHHhc
Q 002375 880 LH-LRAAFYESIGDLTSAIRDSQAALC 905 (929)
Q Consensus 880 ~~-~la~~~~~~g~~~~A~~~~~~al~ 905 (929)
.| .++.+|...|++++|.+..+...+
T Consensus 693 ~y~ll~n~ya~~g~~~~a~~vr~~M~~ 719 (857)
T PLN03077 693 YYILLCNLYADAGKWDEVARVRKTMRE 719 (857)
T ss_pred hHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 77 679999999999999999877643
No 46
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.79 E-value=2.4e-16 Score=179.08 Aligned_cols=228 Identities=15% Similarity=0.050 Sum_probs=179.9
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch-HHHHHHHHHHHhc
Q 002375 642 LRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADT 720 (929)
Q Consensus 642 ~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~l~p~~-~a~~~l~~~l~~~ 720 (929)
+....+.++...|++++|...+++..+..|+++.++..++.++...|++++|.+.+++..+..... ..+..+
T Consensus 155 ~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l------- 227 (409)
T TIGR00540 155 VEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADL------- 227 (409)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHH-------
Confidence 344458888889999999999999999999999999999999999999999999999988764322 100000
Q ss_pred CCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC------CChHHHHHHHHHHHHhC
Q 002375 721 NLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI------KHTRAHQGLARVYYLKN 794 (929)
Q Consensus 721 ~~~~~~~~~a~~~~~~Al~~~~~~l~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~------~~~~a~~~la~~~~~~g 794 (929)
.......+...+..+++.+.+.++.+. +.+..+..++..+...|
T Consensus 228 ------------------------------~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g 277 (409)
T TIGR00540 228 ------------------------------EQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCD 277 (409)
T ss_pred ------------------------------HHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCC
Confidence 001111112223333344455554443 35678899999999999
Q ss_pred CHHHHHHHHHHHHHHccCCHH----HHHHHh--hcCCHHHHHHHHHHHHhcCCCCc--HHHHHHHHHHHhcCCHHHHHHH
Q 002375 795 ELKAAYDEMTKLLEKAQYSAS----AFEKRS--EYSDREMAKNDLNMATQLDPLRT--YPYRYRAAVLMDDQKEVEAVEE 866 (929)
Q Consensus 795 ~~~~A~~~~~~al~~~p~~~~----~~~~lg--~~~~~~~A~~~~~~al~l~p~~~--~~~~~la~~~~~~g~~~eA~~~ 866 (929)
++++|.+.++++++..|++.. .+...+ ..++.+.++..++++++..|+++ .....+|+++.+.|++++|.++
T Consensus 278 ~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~ 357 (409)
T TIGR00540 278 DHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADA 357 (409)
T ss_pred ChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHH
Confidence 999999999999999999875 333333 34778999999999999999999 8899999999999999999999
Q ss_pred HH--HHHhcCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 002375 867 LS--KAIAFKPDLQMLHLRAAFYESIGDLTSAIRDSQAALCL 906 (929)
Q Consensus 867 l~--kal~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 906 (929)
|+ ++++..|++..+..+|.++.++|+.++|.++|++++..
T Consensus 358 le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 358 FKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred HHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99 68889999988778899999999999999999998764
No 47
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.79 E-value=2.2e-16 Score=179.06 Aligned_cols=329 Identities=16% Similarity=0.084 Sum_probs=179.6
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHhcccC-CHhHHHHHHHHHHHhccHHHHHHHHHHHHhhcCCchhhhccccHHHHHH
Q 002375 517 PYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVK 595 (929)
Q Consensus 517 a~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~a~~ll~ 595 (929)
.++..|+.++..|++++|...+..+|..+| ++..|+.+|.+|-+.|+.+++...+-.|-.++|++. ..|..++
T Consensus 141 ~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~------e~W~~la 214 (895)
T KOG2076|consen 141 QLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDY------ELWKRLA 214 (895)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCh------HHHHHHH
Confidence 344445555555555555555555555555 445555555555555555555555555555555555 3444455
Q ss_pred HHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCch--
Q 002375 596 LLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE-- 673 (929)
Q Consensus 596 ~~~~~~~~~~~A~~~l~l~~~~~~~d~~~al~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~-- 673 (929)
.....+|.+++| .-+|.++++.+|.+....+.++.+|.+.|+...|+..|.+++...|..
T Consensus 215 dls~~~~~i~qA------------------~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~ 276 (895)
T KOG2076|consen 215 DLSEQLGNINQA------------------RYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDI 276 (895)
T ss_pred HHHHhcccHHHH------------------HHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhH
Confidence 555555555555 223355555555555555555555555555555555555555555411
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCchhHH
Q 002375 674 ---HERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQA 750 (929)
Q Consensus 674 ---~~~~~~lg~~~~~~g~~~eA~~~~~~al~l~p~~~a~~~l~~~l~~~~~~~~~~~~a~~~~~~Al~~~~~~l~~~~a 750 (929)
...-...+..+...++-+.|++.++.++....+- ...+.
T Consensus 277 er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~--------------------------------------~~~ed 318 (895)
T KOG2076|consen 277 ERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDE--------------------------------------ASLED 318 (895)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhcccc--------------------------------------ccccH
Confidence 0111222344444444455555555444421111 01233
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHcC-------------------------C-----ChHH-HHHHHHHHHHhCCHHHH
Q 002375 751 LNNLGSIYVECGKLDQAENCYINALDI-------------------------K-----HTRA-HQGLARVYYLKNELKAA 799 (929)
Q Consensus 751 ~~~lg~~~~~~g~~~eA~~~~~~al~~-------------------------~-----~~~a-~~~la~~~~~~g~~~~A 799 (929)
++.++.+++...+++.|.......... + ...+ ...++.+..+.++..++
T Consensus 319 ~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ 398 (895)
T KOG2076|consen 319 LNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEA 398 (895)
T ss_pred HHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHH
Confidence 455556666666666665555444330 0 0012 33333444444444444
Q ss_pred HHHHHHHHHHccC-CHHHHHHHh----hcCCHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 002375 800 YDEMTKLLEKAQY-SASAFEKRS----EYSDREMAKNDLNMATQLDP-LRTYPYRYRAAVLMDDQKEVEAVEELSKAIAF 873 (929)
Q Consensus 800 ~~~~~~al~~~p~-~~~~~~~lg----~~~~~~~A~~~~~~al~l~p-~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~ 873 (929)
+..+..--...|. ..+.+..++ ..|++.+|+..|..++...+ .+...|+.+|.+|+..|.+++|++.|++++..
T Consensus 399 ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~ 478 (895)
T KOG2076|consen 399 LLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLIL 478 (895)
T ss_pred HHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 4433222221122 334455555 45777777777777776655 45678888888888888888888888888888
Q ss_pred CCCchHHH-HHHHHHHHcCCHHHHHHHHHHHhccC
Q 002375 874 KPDLQMLH-LRAAFYESIGDLTSAIRDSQAALCLD 907 (929)
Q Consensus 874 ~p~~~~~~-~la~~~~~~g~~~~A~~~~~~al~l~ 907 (929)
.|++.... .++.++.++|+.++|.+.+++...-|
T Consensus 479 ~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D 513 (895)
T KOG2076|consen 479 APDNLDARITLASLYQQLGNHEKALETLEQIINPD 513 (895)
T ss_pred CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCC
Confidence 88886554 77888888888888888888876444
No 48
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.78 E-value=1.2e-15 Score=185.90 Aligned_cols=382 Identities=13% Similarity=0.033 Sum_probs=296.8
Q ss_pred HHHHHHHHHHh--cCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccCCHhHHHHHHHHHHHhccHHHHHHHHHHHHh
Q 002375 499 EKIVDLNYASE--LDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLA 576 (929)
Q Consensus 499 ~Ai~~~~~al~--l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~al~ 576 (929)
.+...+....+ ..| +...+..+...|.+.|+++.|...|++.. .++...|..+...|.+.|++++|+..|++.++
T Consensus 141 ~a~~l~~~m~~~g~~~-~~~~~n~Li~~y~k~g~~~~A~~lf~~m~--~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~ 217 (697)
T PLN03081 141 CVKAVYWHVESSGFEP-DQYMMNRVLLMHVKCGMLIDARRLFDEMP--ERNLASWGTIIGGLVDAGNYREAFALFREMWE 217 (697)
T ss_pred HHHHHHHHHHHhCCCc-chHHHHHHHHHHhcCCCHHHHHHHHhcCC--CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 66667766655 355 47788888999999999999999999986 46677788999999999999999999999987
Q ss_pred hcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcC-CCChHHHHHHHHHHHHhcC
Q 002375 577 LESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLIND-PGKSFLRFRQSLLLLRLNC 655 (929)
Q Consensus 577 ~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~d~~~al~~~~~al~~~-p~~~~~~~~lg~~~~~~g~ 655 (929)
..+.... ..+..+-......+....+..+. ..+++.. ..+..++..+...|.+.|+
T Consensus 218 ~g~~p~~-----~t~~~ll~a~~~~~~~~~~~~l~------------------~~~~~~g~~~d~~~~n~Li~~y~k~g~ 274 (697)
T PLN03081 218 DGSDAEP-----RTFVVMLRASAGLGSARAGQQLH------------------CCVLKTGVVGDTFVSCALIDMYSKCGD 274 (697)
T ss_pred hCCCCCh-----hhHHHHHHHHhcCCcHHHHHHHH------------------HHHHHhCCCccceeHHHHHHHHHHCCC
Confidence 5432210 22222333344455555554333 3333332 3356678889999999999
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--ccchHHHHHHHHHHHhcCCCCCChHHHHHH
Q 002375 656 QKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISI--ERTFEAFFLKAYILADTNLDPESSTYVIQL 733 (929)
Q Consensus 656 ~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~l--~p~~~a~~~l~~~l~~~~~~~~~~~~a~~~ 733 (929)
+++|.+.|+... +.+...|..+...|.+.|++++|+..|++..+. .|+..++..+..++...+ .
T Consensus 275 ~~~A~~vf~~m~---~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g-----------~ 340 (697)
T PLN03081 275 IEDARCVFDGMP---EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLA-----------L 340 (697)
T ss_pred HHHHHHHHHhCC---CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcc-----------c
Confidence 999999998763 456789999999999999999999999998764 466677888888888887 6
Q ss_pred HHHHhhchhccCch-----hHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 002375 734 LEEALRCPSDGLRK-----GQALNNLGSIYVECGKLDQAENCYINALDIKHTRAHQGLARVYYLKNELKAAYDEMTKLLE 808 (929)
Q Consensus 734 ~~~Al~~~~~~l~~-----~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~ 808 (929)
+++|.+.+....+. ...++.+...|.+.|++++|...|++..+ .+..+|..+...|.+.|+.++|++.|+++.+
T Consensus 341 ~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~-~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~ 419 (697)
T PLN03081 341 LEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR-KNLISWNALIAGYGNHGRGTKAVEMFERMIA 419 (697)
T ss_pred hHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC-CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 67777666655432 36788999999999999999999998765 3556899999999999999999999999886
Q ss_pred Hc--cCCHHHHH---HHhhcCCHHHHHHHHHHHHhcCC--CCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHH
Q 002375 809 KA--QYSASAFE---KRSEYSDREMAKNDLNMATQLDP--LRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLH 881 (929)
Q Consensus 809 ~~--p~~~~~~~---~lg~~~~~~~A~~~~~~al~l~p--~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~ 881 (929)
.. |+...... ..+..|..++|...|+...+..+ -+...|..+..+|.+.|++++|.+.+++. ...|+...|.
T Consensus 420 ~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~-~~~p~~~~~~ 498 (697)
T PLN03081 420 EGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA-PFKPTVNMWA 498 (697)
T ss_pred hCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC-CCCCCHHHHH
Confidence 53 44333221 22378999999999999976433 24567889999999999999999999874 4567777777
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHh
Q 002375 882 LRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNRARD 922 (929)
Q Consensus 882 ~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~l~~ 922 (929)
.+...+...|+.+.|...+++.++++|++...+..+..+..
T Consensus 499 ~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~ 539 (697)
T PLN03081 499 ALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYN 539 (697)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHH
Confidence 77778889999999999999999999998776666655543
No 49
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.78 E-value=2.8e-16 Score=178.50 Aligned_cols=452 Identities=13% Similarity=0.052 Sum_probs=328.2
Q ss_pred HhhHHHHhcccHHHHHHHHHHHHhcC-ccccHHHHHHHHHHhchH---HHHHHHHHhhhcCCCcchhhhHHHHHhh-hhh
Q 002375 424 QLGCVMFEREEYKDACYYFEAAADAG-HIYSLAGLARAKYKVGQQ---YSAYKLINSIISEHKPTGWMYQERSLYN-LGR 498 (929)
Q Consensus 424 ~lG~~~~~~g~y~~A~~~f~~al~~~-~~~~~a~la~~~~~~g~a---~~a~~~~~~l~~~~~~~~~~~~~~~l~~-~~~ 498 (929)
..|.+...++.|.+|........... .+.+...+..++.+.+.. ...+... . ...-| ....+.. ...
T Consensus 404 akgl~~ie~~~y~Daa~tl~lv~~~s~nd~slselswc~~~~~ek~mdva~~~~~-----e-~~~~w--~a~~~~rK~~~ 475 (1238)
T KOG1127|consen 404 AKGLAPIEANVYTDAAITLDLVSSLSFNDDSLSELSWCLPRALEKMMDVALLLEC-----E-NSEFW--VALGCMRKNSA 475 (1238)
T ss_pred hcchhHHHHhhchHHHHHHHHHHHhhcCchhhhHhhHHHHHhHHhhhhHHHHHHH-----H-HHHHH--HHHHHhhhhHH
Confidence 35667778888999888887776663 111222233333322111 1111100 0 00111 1111111 223
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccC-CHhHHHHHHHHHHHhccHHHHHHHHHHHHhh
Q 002375 499 EKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLALLAL 577 (929)
Q Consensus 499 ~Ai~~~~~al~l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~~g~~~eA~~~~~~al~~ 577 (929)
.|...|-+++++||+.+.+|..+|.+|....+...|..+|.++.++++ +.+.....+..|....+.++|....-.+-+.
T Consensus 476 ~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qk 555 (1238)
T KOG1127|consen 476 LALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQK 555 (1238)
T ss_pred HHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhh
Confidence 889999999999999999999999999999999999999999999998 6677888899999999999999986666555
Q ss_pred cCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHH
Q 002375 578 ESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQK 657 (929)
Q Consensus 578 ~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~d~~~al~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~ 657 (929)
.|....- ..+..+|..|...++...|++++ +.+++.+|++...|..+|.+|.+.|.+.
T Consensus 556 a~a~~~k----~nW~~rG~yyLea~n~h~aV~~f------------------QsALR~dPkD~n~W~gLGeAY~~sGry~ 613 (1238)
T KOG1127|consen 556 APAFACK----ENWVQRGPYYLEAHNLHGAVCEF------------------QSALRTDPKDYNLWLGLGEAYPESGRYS 613 (1238)
T ss_pred chHHHHH----hhhhhccccccCccchhhHHHHH------------------HHHhcCCchhHHHHHHHHHHHHhcCcee
Confidence 5544311 33444888888888999998888 9999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch-HHHHHHHHHHHhcCCC---CCChHHHHHH
Q 002375 658 AAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLD---PESSTYVIQL 733 (929)
Q Consensus 658 ~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~l~p~~-~a~~~l~~~l~~~~~~---~~~~~~a~~~ 733 (929)
.|++.|.++..++|.+....+..+.+....|+|.+|+..+...+...... .....++.++.+...+ .+-...+...
T Consensus 614 ~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~ 693 (1238)
T KOG1127|consen 614 HALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDF 693 (1238)
T ss_pred hHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHH
Confidence 99999999999999999999999999999999999999999988765444 3344444443332200 0011112223
Q ss_pred HHHHhhchhccCch-----hHHHHHHHHH-------------------HHH----cCCH------HHHHHHHHHHHcC-C
Q 002375 734 LEEALRCPSDGLRK-----GQALNNLGSI-------------------YVE----CGKL------DQAENCYINALDI-K 778 (929)
Q Consensus 734 ~~~Al~~~~~~l~~-----~~a~~~lg~~-------------------~~~----~g~~------~eA~~~~~~al~~-~ 778 (929)
++++++.+.-++.. ...|..+|.+ +.. .+.. --|.+++-..++. .
T Consensus 694 ~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~ 773 (1238)
T KOG1127|consen 694 FEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAI 773 (1238)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhh
Confidence 44444433322211 0112111111 111 1111 2355666666666 5
Q ss_pred ChHHHHHHHHHHHH--------hCCHHHHHHHHHHHHHHccCCHHHHHHHh---hcCCHHHHHHHHHHHHhcCCCCcHHH
Q 002375 779 HTRAHQGLARVYYL--------KNELKAAYDEMTKLLEKAQYSASAFEKRS---EYSDREMAKNDLNMATQLDPLRTYPY 847 (929)
Q Consensus 779 ~~~a~~~la~~~~~--------~g~~~~A~~~~~~al~~~p~~~~~~~~lg---~~~~~~~A~~~~~~al~l~p~~~~~~ 847 (929)
++..|+++|.-|.. +.+...|+..+.++++...++...|..+| ..|++.-|..+|-+.+...|...-.|
T Consensus 774 ~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVlsg~gnva~aQHCfIks~~sep~~~~~W 853 (1238)
T KOG1127|consen 774 HMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVLSGIGNVACAQHCFIKSRFSEPTCHCQW 853 (1238)
T ss_pred ccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHhhccchhhhhhhhhhhhhhccccchhhe
Confidence 67899999998876 22345799999999999999999999999 45889999999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHH-HHHHHHHHcCCHHHHHHHHHHHhc
Q 002375 848 RYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLH-LRAAFYESIGDLTSAIRDSQAALC 905 (929)
Q Consensus 848 ~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~-~la~~~~~~g~~~~A~~~~~~al~ 905 (929)
.++|.++.+..+++.|...|.++..++|.+-..+ ..+.+-...|+.-++...|..--+
T Consensus 854 ~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~e 912 (1238)
T KOG1127|consen 854 LNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDE 912 (1238)
T ss_pred eccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHH
Confidence 9999999999999999999999999999986555 558889999999999998887333
No 50
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.76 E-value=7.5e-16 Score=160.75 Aligned_cols=399 Identities=16% Similarity=0.125 Sum_probs=269.0
Q ss_pred HHHHHHHHhhHHHHhcccHHHHHHHHHHHHhcCccccHH-HHHHHHHHhch---HHHHHHHHHhhhcCC----------C
Q 002375 417 QRMLALHQLGCVMFEREEYKDACYYFEAAADAGHIYSLA-GLARAKYKVGQ---QYSAYKLINSIISEH----------K 482 (929)
Q Consensus 417 ~~a~~~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~~~a-~la~~~~~~g~---a~~a~~~~~~l~~~~----------~ 482 (929)
.+-..+.++|..+.+.|.|++|+..|+..++..|....+ .+..+++.-|+ ..+++.+++.+--.. .
T Consensus 274 ~rikil~nigvtfiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~dd 353 (840)
T KOG2003|consen 274 MRIKILNNIGVTFIQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDD 353 (840)
T ss_pred hHHHHHhhcCeeEEecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCC
Confidence 345577899999999999999999999999999987665 44444444444 455666555432111 1
Q ss_pred cc-hhhhHHH---HHhhhhh----HHHHHHHHHHhc-----CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccCCHh
Q 002375 483 PT-GWMYQER---SLYNLGR----EKIVDLNYASEL-----DPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVD 549 (929)
Q Consensus 483 ~~-~~~~~~~---~l~~~~~----~Ai~~~~~al~l-----~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~ 549 (929)
|. .....+. .+-...+ .|.+....+.++ .|+.+..+- +|+... +|-....-+ .+
T Consensus 354 p~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~d---wcle~l----k~s~~~~la------~d 420 (840)
T KOG2003|consen 354 PDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCD---WCLESL----KASQHAELA------ID 420 (840)
T ss_pred cchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccH---HHHHHH----HHhhhhhhh------hh
Confidence 11 1111110 0000001 111222212111 111111100 010000 000011111 12
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhcCCchhhhccccHHHHHHHHHHhh--cccchHHHHHHhhhccccccccccHH
Q 002375 550 CLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHV--RSWSPADCWIKLYDRWSSVDDIGSLA 627 (929)
Q Consensus 550 ~~~~~a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~a~~ll~~~~~~~--~~~~~A~~~l~l~~~~~~~d~~~al~ 627 (929)
.-...+.-+++.|+++.|++.+.-.-+.+.....+ .+.. +..++..+ .++..|..+.
T Consensus 421 lei~ka~~~lk~~d~~~aieilkv~~~kdnk~~sa----aa~n-l~~l~flqggk~~~~aqqya---------------- 479 (840)
T KOG2003|consen 421 LEINKAGELLKNGDIEGAIEILKVFEKKDNKTASA----AANN-LCALRFLQGGKDFADAQQYA---------------- 479 (840)
T ss_pred hhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHH----Hhhh-hHHHHHHhcccchhHHHHHH----------------
Confidence 23345666788889999888776544433322211 1122 22222221 2334443333
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch
Q 002375 628 VINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF 707 (929)
Q Consensus 628 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~l~p~~ 707 (929)
..++..+..++.+..+.|.+.+..|++++|.+.|+.++..+....++++++|..+..+|+.++|+.+|-+.-.+-.++
T Consensus 480 --d~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn 557 (840)
T KOG2003|consen 480 --DIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNN 557 (840)
T ss_pred --HHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhh
Confidence 677788888888888888888888888888888888888888888888888888888888888888887654433222
Q ss_pred HHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC--CChHHHHH
Q 002375 708 EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI--KHTRAHQG 785 (929)
Q Consensus 708 ~a~~~l~~~l~~~~~~~~~~~~a~~~~~~Al~~~~~~l~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~--~~~~a~~~ 785 (929)
.++++.++.+|..+.+..+|+++|.++..+ +++..+..
T Consensus 558 ----------------------------------------~evl~qianiye~led~aqaie~~~q~~slip~dp~ilsk 597 (840)
T KOG2003|consen 558 ----------------------------------------AEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSK 597 (840)
T ss_pred ----------------------------------------HHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHH
Confidence 567899999999999999999999999998 77889999
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHh----hcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHH
Q 002375 786 LARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS----EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEV 861 (929)
Q Consensus 786 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg----~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~ 861 (929)
||.+|-+.|+..+|.+++-......|.+.+....++ ...-.++|+.+|+++.-+.|+...-....+.++.+.|+|.
T Consensus 598 l~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyq 677 (840)
T KOG2003|consen 598 LADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQ 677 (840)
T ss_pred HHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHH
Confidence 999999999999999999999999999988877777 2345689999999999999998888889999999999999
Q ss_pred HHHHHHHHHHhcCCCch-HHHHHHHHHHHcC
Q 002375 862 EAVEELSKAIAFKPDLQ-MLHLRAAFYESIG 891 (929)
Q Consensus 862 eA~~~l~kal~~~p~~~-~~~~la~~~~~~g 891 (929)
+|.+.|+..-...|.+- ++..+-.+.-.+|
T Consensus 678 ka~d~yk~~hrkfpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 678 KAFDLYKDIHRKFPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred HHHHHHHHHHHhCccchHHHHHHHHHhcccc
Confidence 99999999999989874 5555555554444
No 51
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.76 E-value=3.2e-14 Score=175.36 Aligned_cols=348 Identities=11% Similarity=0.012 Sum_probs=187.2
Q ss_pred HHHhhHHHHhcccHHHHHHHHHHHHhcCcc--ccH--HHHHHHHHHhchHHHHHHHHHhhhcCCCcchhhhHHHHHhhhh
Q 002375 422 LHQLGCVMFEREEYKDACYYFEAAADAGHI--YSL--AGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNLG 497 (929)
Q Consensus 422 ~~~lG~~~~~~g~y~~A~~~f~~al~~~~~--~~~--a~la~~~~~~g~a~~a~~~~~~l~~~~~~~~~~~~~~~l~~~~ 497 (929)
+..+=..+.+.|++++|++.|+.....+.. ... +.+...+...|....++.... .+...+...|...-..+...+
T Consensus 373 ~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~-~M~~pd~~Tyn~LL~a~~k~g 451 (1060)
T PLN03218 373 YIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAK-LIRNPTLSTFNMLMSVCASSQ 451 (1060)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHH-HcCCCCHHHHHHHHHHHHhCc
Confidence 333444566889999999999998876532 211 123334444555444443222 222222222322222222222
Q ss_pred h--HHHHHHHHHHhcCC-CChHHHHHHHHHHHHhCCHHHHHHHHHHHhccc--CCHhHHHHHHHHHHHhccHHHHHHHHH
Q 002375 498 R--EKIVDLNYASELDP-TLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFK--LSVDCLELRAWLFIAADDYESALRDTL 572 (929)
Q Consensus 498 ~--~Ai~~~~~al~l~P-~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~a~~~~~~g~~~eA~~~~~ 572 (929)
+ +|...|+++.+... .+...|..+-..|.+.|++++|...|+++.+.. |+...|..+...|.+.|++++|+..|+
T Consensus 452 ~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~ 531 (1060)
T PLN03218 452 DIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYG 531 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 2 66666666665543 244556666666667777777777776665432 344556666666666777777777666
Q ss_pred HHHhh--cCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhc----CCCChHHHHHH
Q 002375 573 ALLAL--ESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLIN----DPGKSFLRFRQ 646 (929)
Q Consensus 573 ~al~~--~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~d~~~al~~~~~al~~----~p~~~~~~~~l 646 (929)
...+. .|+. ..+..+...+...|++++|...+ .++... .| +...|..+
T Consensus 532 ~M~~~Gv~PD~-------vTYnsLI~a~~k~G~~deA~~lf------------------~eM~~~~~gi~P-D~vTynaL 585 (1060)
T PLN03218 532 IMRSKNVKPDR-------VVFNALISACGQSGAVDRAFDVL------------------AEMKAETHPIDP-DHITVGAL 585 (1060)
T ss_pred HHHHcCCCCCH-------HHHHHHHHHHHHCCCHHHHHHHH------------------HHHHHhcCCCCC-cHHHHHHH
Confidence 66543 2332 23344555555566666664444 444331 23 24455566
Q ss_pred HHHHHHhcCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--ccchHHHHHHHHHHHhcCCC
Q 002375 647 SLLLLRLNCQKAAMRCLRLARNHS-SSEHERLVYEGWILYDTGHREEALSRAEKSISI--ERTFEAFFLKAYILADTNLD 723 (929)
Q Consensus 647 g~~~~~~g~~~~A~~~l~~al~~~-p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~l--~p~~~a~~~l~~~l~~~~~~ 723 (929)
...|.+.|++++|.+.|+.+.+.+ +.+...|..+...|.+.|++++|+..|+++.+. .|+...+..+...+...+
T Consensus 586 I~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G-- 663 (1060)
T PLN03218 586 MKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAG-- 663 (1060)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC--
Confidence 666666677777777766666654 334556666666666667777777666666554 344344444444444444
Q ss_pred CCChHHHHHHHHHHhhchhccCc----h-hHHHHHHHHHHHHcCCHHHHHHHHHHHHcC---CChHHHHHHHHHHHHhCC
Q 002375 724 PESSTYVIQLLEEALRCPSDGLR----K-GQALNNLGSIYVECGKLDQAENCYINALDI---KHTRAHQGLARVYYLKNE 795 (929)
Q Consensus 724 ~~~~~~a~~~~~~Al~~~~~~l~----~-~~a~~~lg~~~~~~g~~~eA~~~~~~al~~---~~~~a~~~la~~~~~~g~ 795 (929)
.+++|.+.+....+ + ...|..+...|.+.|++++|.+.|+++.+. .+...|..+...|.+.|+
T Consensus 664 ---------~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~ 734 (1060)
T PLN03218 664 ---------DLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQ 734 (1060)
T ss_pred ---------CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCC
Confidence 34444444333322 1 244555555555555555555555555433 223345555555555555
Q ss_pred HHHHHHHHHHHH
Q 002375 796 LKAAYDEMTKLL 807 (929)
Q Consensus 796 ~~~A~~~~~~al 807 (929)
+++|.+.++++.
T Consensus 735 ~eeAlelf~eM~ 746 (1060)
T PLN03218 735 LPKALEVLSEMK 746 (1060)
T ss_pred HHHHHHHHHHHH
Confidence 555555555544
No 52
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=2.8e-16 Score=169.83 Aligned_cols=267 Identities=15% Similarity=0.078 Sum_probs=192.7
Q ss_pred CChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccC-CHhHHHHHHHHHHHhccHHHHHHHHHHHHhhcCCchhhhccccHH
Q 002375 513 TLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGD 591 (929)
Q Consensus 513 ~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~a~ 591 (929)
++......++..++..++|.+..+..+..++..| ++.++.....++..+|+..+-...-.+.+..+|+.+ ..+
T Consensus 242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a------~sW 315 (611)
T KOG1173|consen 242 ENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKA------LSW 315 (611)
T ss_pred hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCC------cch
Confidence 4566777788888888888888888888888888 777766665688888888877777778888888888 566
Q ss_pred HHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Q 002375 592 HLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSS 671 (929)
Q Consensus 592 ~ll~~~~~~~~~~~~A~~~l~l~~~~~~~d~~~al~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p 671 (929)
..+|.-|...+.+.+|..++ .++..++|..+.+|...|..+...|..++|+.+|..|-++-|
T Consensus 316 ~aVg~YYl~i~k~seARry~------------------SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~ 377 (611)
T KOG1173|consen 316 FAVGCYYLMIGKYSEARRYF------------------SKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMP 377 (611)
T ss_pred hhHHHHHHHhcCcHHHHHHH------------------HHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhcc
Confidence 66888888888888887777 888888888888888888888888888888888888888888
Q ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHH
Q 002375 672 SEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQAL 751 (929)
Q Consensus 672 ~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~l~p~~~a~~~l~~~l~~~~~~~~~~~~a~~~~~~Al~~~~~~l~~~~a~ 751 (929)
........+|.-|..+++++-|...|.+|+.+.|++ +-.+
T Consensus 378 G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~D----------------------------------------plv~ 417 (611)
T KOG1173|consen 378 GCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSD----------------------------------------PLVL 417 (611)
T ss_pred CCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCc----------------------------------------chhh
Confidence 888888888888888888888888888888888877 3335
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHcC----CC-----hHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHh-
Q 002375 752 NNLGSIYVECGKLDQAENCYINALDI----KH-----TRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS- 821 (929)
Q Consensus 752 ~~lg~~~~~~g~~~eA~~~~~~al~~----~~-----~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg- 821 (929)
+.+|.+....+.|.+|..+|+.++.. .+ ...+.++|.++.+.+.+++|+..+++++...|.++.++..+|
T Consensus 418 ~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~ 497 (611)
T KOG1173|consen 418 HELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGY 497 (611)
T ss_pred hhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHH
Confidence 55566666666666666666666532 00 123556666666666666666665555555555544444444
Q ss_pred ---hcCCHHHHHHHHHHHHhcCCCC
Q 002375 822 ---EYSDREMAKNDLNMATQLDPLR 843 (929)
Q Consensus 822 ---~~~~~~~A~~~~~~al~l~p~~ 843 (929)
.+|+++.|++.|.+++.++|++
T Consensus 498 iy~llgnld~Aid~fhKaL~l~p~n 522 (611)
T KOG1173|consen 498 IYHLLGNLDKAIDHFHKALALKPDN 522 (611)
T ss_pred HHHHhcChHHHHHHHHHHHhcCCcc
Confidence 2344444444444444444433
No 53
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.75 E-value=8.5e-15 Score=166.62 Aligned_cols=441 Identities=16% Similarity=0.062 Sum_probs=326.2
Q ss_pred cccHHHHHHHHHHHHhcCccccHHHHHHHHHHhchHHHHHHHHHhhhcCCCcchhhhHHHHHhhhhhHHHHHHHHHHhcC
Q 002375 432 REEYKDACYYFEAAADAGHIYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNLGREKIVDLNYASELD 511 (929)
Q Consensus 432 ~g~y~~A~~~f~~al~~~~~~~~a~la~~~~~~g~a~~a~~~~~~l~~~~~~~~~~~~~~~l~~~~~~Ai~~~~~al~l~ 511 (929)
+++-..|...|=+++.+++.+.. ++.-.|+.+..+. +...|..+|++|.++|
T Consensus 471 rK~~~~al~ali~alrld~~~ap-----af~~LG~iYrd~~-----------------------Dm~RA~kCf~KAFeLD 522 (1238)
T KOG1127|consen 471 RKNSALALHALIRALRLDVSLAP-----AFAFLGQIYRDSD-----------------------DMKRAKKCFDKAFELD 522 (1238)
T ss_pred hhhHHHHHHHHHHHHhcccchhH-----HHHHHHHHHHHHH-----------------------HHHHHHHHHHHHhcCC
Confidence 44567777777777777777665 3333444333222 3448999999999999
Q ss_pred CCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccC---CHhHHHHHHHHHHHhccHHHHHHHHHHHHhhcCCchhhhccc
Q 002375 512 PTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL---SVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRV 588 (929)
Q Consensus 512 P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~---~~~~~~~~a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~ 588 (929)
|.++.++-..+..|.+..+++.|....-++-+..+ ....|..+|..|...++...|+..|+.++..+|++.
T Consensus 523 atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~------ 596 (1238)
T KOG1127|consen 523 ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDY------ 596 (1238)
T ss_pred chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhH------
Confidence 99999999999999999999999999776665555 233466799999999999999999999999999999
Q ss_pred cHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 002375 589 SGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARN 668 (929)
Q Consensus 589 ~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~d~~~al~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~ 668 (929)
+.+..+|.+|...|.+..| +.++.++..++|.+.-..+..+.+....|+|.+|+..+...+.
T Consensus 597 n~W~gLGeAY~~sGry~~A------------------lKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 597 NLWLGLGEAYPESGRYSHA------------------LKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred HHHHHHHHHHHhcCceehH------------------HHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 8888899999999999999 4555999999999999999999999999999999999999887
Q ss_pred cCCch-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--------cch-HHHHHHHHHHH-hcCCCCCChHH-H
Q 002375 669 HSSSE-------HERLVYEGWILYDTGHREEALSRAEKSISIE--------RTF-EAFFLKAYILA-DTNLDPESSTY-V 730 (929)
Q Consensus 669 ~~p~~-------~~~~~~lg~~~~~~g~~~eA~~~~~~al~l~--------p~~-~a~~~l~~~l~-~~~~~~~~~~~-a 730 (929)
..... .+.+...+..+...|-+.+|...++++++.. -++ -.|..++.+.. -..+.+.-+.. .
T Consensus 659 ~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~ 738 (1238)
T KOG1127|consen 659 AFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHY 738 (1238)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHH
Confidence 65443 4555666666666777777877777776542 111 22322222111 00011110000 0
Q ss_pred HH----------------HHHHHhhchhccCc---hhHHHHHHHHHHHH--------cCCHHHHHHHHHHHHcC--CChH
Q 002375 731 IQ----------------LLEEALRCPSDGLR---KGQALNNLGSIYVE--------CGKLDQAENCYINALDI--KHTR 781 (929)
Q Consensus 731 ~~----------------~~~~Al~~~~~~l~---~~~a~~~lg~~~~~--------~g~~~eA~~~~~~al~~--~~~~ 781 (929)
+. .+--+.+++-..+. ....|+++|.-|.. +.+...|+.++.+++++ ++..
T Consensus 739 l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~ 818 (1238)
T KOG1127|consen 739 LIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEG 818 (1238)
T ss_pred HHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHH
Confidence 00 01112222222222 14678999988876 23445799999999999 6667
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHh----hcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhc
Q 002375 782 AHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS----EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDD 857 (929)
Q Consensus 782 a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg----~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~ 857 (929)
.|..||.+ ...|++.-|.-.|-+.+...|.+...|.++| +..+++.|...|.++..++|.+...|...+.+....
T Consensus 819 ~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eav 897 (1238)
T KOG1127|consen 819 LWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAV 897 (1238)
T ss_pred HHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHH
Confidence 89999988 6678999999999999999999999999999 678999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCc------hHHHHHHHHHHHcCCHHHHHH----------HHHHHhccCCCCHHHHHHHHHHH
Q 002375 858 QKEVEAVEELSKAIAFKPDL------QMLHLRAAFYESIGDLTSAIR----------DSQAALCLDPNHMETLDLYNRAR 921 (929)
Q Consensus 858 g~~~eA~~~l~kal~~~p~~------~~~~~la~~~~~~g~~~~A~~----------~~~~al~l~P~~~~a~~~~~~l~ 921 (929)
|+.-++...|...-++.... .-++.--.....+|++++-+. ..++.+.-.|+...++...+...
T Consensus 898 G~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstl 977 (1238)
T KOG1127|consen 898 GRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTL 977 (1238)
T ss_pred HHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHH
Confidence 99999999998855544322 122222445555666655444 45566667899988888777766
Q ss_pred hhhh
Q 002375 922 DQAS 925 (929)
Q Consensus 922 ~~~~ 925 (929)
++..
T Consensus 978 EhL~ 981 (1238)
T KOG1127|consen 978 EHLE 981 (1238)
T ss_pred HHHH
Confidence 5543
No 54
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.75 E-value=3.7e-15 Score=168.37 Aligned_cols=229 Identities=15% Similarity=0.042 Sum_probs=180.1
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch-HHHHHHHHHHHhcCCC
Q 002375 645 RQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLD 723 (929)
Q Consensus 645 ~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~l~p~~-~a~~~l~~~l~~~~~~ 723 (929)
..+.++...|++++|...++++.+.+|+++.++..++.+|...|++++|+..+.+..+..+.. +....
T Consensus 158 ~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~----------- 226 (398)
T PRK10747 158 TRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAM----------- 226 (398)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHH-----------
Confidence 447888899999999999999999999999999999999999999999998888888765433 10000
Q ss_pred CCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC--CChHHHHHHHHHHHHhCCHHHHHH
Q 002375 724 PESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI--KHTRAHQGLARVYYLKNELKAAYD 801 (929)
Q Consensus 724 ~~~~~~a~~~~~~Al~~~~~~l~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~--~~~~a~~~la~~~~~~g~~~~A~~ 801 (929)
++ ..++..+........+-+...+.++...+. +.+.+...++..+...|+.++|.+
T Consensus 227 ----------l~------------~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~ 284 (398)
T PRK10747 227 ----------LE------------QQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQ 284 (398)
T ss_pred ----------HH------------HHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 00 011111111112222333333333333222 567889999999999999999999
Q ss_pred HHHHHHHHccCCHHHHHHHh--hcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchH
Q 002375 802 EMTKLLEKAQYSASAFEKRS--EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQM 879 (929)
Q Consensus 802 ~~~~al~~~p~~~~~~~~lg--~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~ 879 (929)
.++++++. +.++......+ ..++.++++...++.++..|+++..+..+|.++...+++++|.+.|+++++..|++..
T Consensus 285 ~L~~~l~~-~~~~~l~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~ 363 (398)
T PRK10747 285 IILDGLKR-QYDERLVLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD 363 (398)
T ss_pred HHHHHHhc-CCCHHHHHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH
Confidence 99999994 44555444444 4589999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 002375 880 LHLRAAFYESIGDLTSAIRDSQAALCLD 907 (929)
Q Consensus 880 ~~~la~~~~~~g~~~~A~~~~~~al~l~ 907 (929)
+..++.++.++|+.++|.++|++++.+-
T Consensus 364 ~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 364 YAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 8899999999999999999999998764
No 55
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.75 E-value=6.8e-18 Score=182.18 Aligned_cols=252 Identities=21% Similarity=0.213 Sum_probs=112.5
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHh-c-CCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch-HHHHHHHHHHHh
Q 002375 643 RFRQSLLLLRLNCQKAAMRCLRLARN-H-SSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILAD 719 (929)
Q Consensus 643 ~~~lg~~~~~~g~~~~A~~~l~~al~-~-~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~l~p~~-~a~~~l~~~l~~ 719 (929)
.+.+|.++...|++++|++.+.+.+. . .|+++..|..+|.+....+++++|+..|++++..++.. ..+..++.. ..
T Consensus 11 ~l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~ 89 (280)
T PF13429_consen 11 ALRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQ 89 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cc
Confidence 34679999999999999999976554 4 48889999999999999999999999999999988877 444444444 33
Q ss_pred cCCCCCChHHHHHHHHHHhhchhccCch---hHHHHHHHHHHHHcCCHHHHHHHHHHHHcC----CChHHHHHHHHHHHH
Q 002375 720 TNLDPESSTYVIQLLEEALRCPSDGLRK---GQALNNLGSIYVECGKLDQAENCYINALDI----KHTRAHQGLARVYYL 792 (929)
Q Consensus 720 ~~~~~~~~~~a~~~~~~Al~~~~~~l~~---~~a~~~lg~~~~~~g~~~eA~~~~~~al~~----~~~~a~~~la~~~~~ 792 (929)
.+ .+++|++.+.++.+. ...+.....++...++++++...++++... .++..|..+|.++..
T Consensus 90 ~~-----------~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~ 158 (280)
T PF13429_consen 90 DG-----------DPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQ 158 (280)
T ss_dssp ---------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHH
T ss_pred cc-----------cccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHH
Confidence 33 677777777666442 356667778889999999999999997755 355788999999999
Q ss_pred hCCHHHHHHHHHHHHHHccCCHHHHHHHh----hcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHH
Q 002375 793 KNELKAAYDEMTKLLEKAQYSASAFEKRS----EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELS 868 (929)
Q Consensus 793 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg----~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~ 868 (929)
.|+.++|+..++++++.+|++..+...++ ..|+.+++...+....+..|.++..+..+|.++...|++++|+..|+
T Consensus 159 ~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~ 238 (280)
T PF13429_consen 159 LGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLE 238 (280)
T ss_dssp CCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccc
Confidence 99999999999999999999999887777 56889998888888888888899999999999999999999999999
Q ss_pred HHHhcCCCchHHH-HHHHHHHHcCCHHHHHHHHHHHhcc
Q 002375 869 KAIAFKPDLQMLH-LRAAFYESIGDLTSAIRDSQAALCL 906 (929)
Q Consensus 869 kal~~~p~~~~~~-~la~~~~~~g~~~~A~~~~~~al~l 906 (929)
++++.+|+++.+. ..|.++...|+.++|...++++++.
T Consensus 239 ~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 239 KALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp HHHHHSTT-HHHHHHHHHHHT------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccc
Confidence 9999999998777 6799999999999999999998753
No 56
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.74 E-value=9.1e-15 Score=163.49 Aligned_cols=261 Identities=17% Similarity=0.115 Sum_probs=169.5
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-CCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 002375 626 LAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNH-SSSEHERLVYEGWILYDTGHREEALSRAEKSISIE 704 (929)
Q Consensus 626 l~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~-~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~l~ 704 (929)
+..++++++.+|+|+.+.+.++.-|..+++.+.|++..+++++. ..+++.+|..++.++...+++.+|+...+.++.-.
T Consensus 464 lqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~ 543 (799)
T KOG4162|consen 464 LQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF 543 (799)
T ss_pred HHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh
Confidence 55556666666666666666666666666666666666666666 33345566666666666666666666666666555
Q ss_pred cch-HHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC-C----
Q 002375 705 RTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI-K---- 778 (929)
Q Consensus 705 p~~-~a~~~l~~~l~~~~~~~~~~~~a~~~~~~Al~~~~~~l~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~-~---- 778 (929)
|++ .... ....+-...++.++|+......+.. .
T Consensus 544 ~~N~~l~~-----------------------------------------~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~ 582 (799)
T KOG4162|consen 544 GDNHVLMD-----------------------------------------GKIHIELTFNDREEALDTCIHKLALWEAEYG 582 (799)
T ss_pred hhhhhhch-----------------------------------------hhhhhhhhcccHHHHHHHHHHHHHHHHhhhh
Confidence 544 1111 1111122234445554444444433 1
Q ss_pred ------ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-------------------ccCCH-------HHHHHHh----h
Q 002375 779 ------HTRAHQGLARVYYLKNELKAAYDEMTKLLEK-------------------AQYSA-------SAFEKRS----E 822 (929)
Q Consensus 779 ------~~~a~~~la~~~~~~g~~~~A~~~~~~al~~-------------------~p~~~-------~~~~~lg----~ 822 (929)
........+.......+..+|...++++... .|... ..|...+ .
T Consensus 583 ~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~ 662 (799)
T KOG4162|consen 583 VQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLL 662 (799)
T ss_pred HhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHh
Confidence 0011111112222223333333333333211 11111 1233333 5
Q ss_pred cCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCch-HHHHHHHHHHHcCCHHHHHH--H
Q 002375 823 YSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQ-MLHLRAAFYESIGDLTSAIR--D 899 (929)
Q Consensus 823 ~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~-~~~~la~~~~~~g~~~~A~~--~ 899 (929)
.++.++|..++.++-.++|..+..|+..|..+...|++.+|.+.|..++.++|++. ....+|.++...|+..-|.. .
T Consensus 663 ~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~ 742 (799)
T KOG4162|consen 663 SGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSL 742 (799)
T ss_pred cCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHH
Confidence 68889999999999999999999999999999999999999999999999999995 55589999999999998888 9
Q ss_pred HHHHhccCCCCHHHHHHHHHHHhhhhhh
Q 002375 900 SQAALCLDPNHMETLDLYNRARDQASHQ 927 (929)
Q Consensus 900 ~~~al~l~P~~~~a~~~~~~l~~~~~~~ 927 (929)
+..++++||.++++|..++.+-++.++.
T Consensus 743 L~dalr~dp~n~eaW~~LG~v~k~~Gd~ 770 (799)
T KOG4162|consen 743 LSDALRLDPLNHEAWYYLGEVFKKLGDS 770 (799)
T ss_pred HHHHHhhCCCCHHHHHHHHHHHHHccch
Confidence 9999999999999999999998887654
No 57
>PRK12370 invasion protein regulator; Provisional
Probab=99.74 E-value=4.2e-16 Score=183.65 Aligned_cols=245 Identities=15% Similarity=0.003 Sum_probs=179.7
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHHh---------CCHHHHHHHHHHHhcccC-CHhHHHHHHHHHHHhccHHHH
Q 002375 498 REKIVDLNYASELDPTLSFPYKYRAVAKMEE---------GQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESA 567 (929)
Q Consensus 498 ~~Ai~~~~~al~l~P~~~~a~~~~a~~~~~~---------g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~~g~~~eA 567 (929)
++|+..|++|++++|+++.+|..+|.++... +++++|+..++++++++| ++..+..+|.++...|++++|
T Consensus 278 ~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A 357 (553)
T PRK12370 278 QQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVG 357 (553)
T ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHH
Confidence 4899999999999999999999999887644 347888888888888888 777788888888888888888
Q ss_pred HHHHHHHHhhcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHH
Q 002375 568 LRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQS 647 (929)
Q Consensus 568 ~~~~~~al~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~d~~~al~~~~~al~~~p~~~~~~~~lg 647 (929)
+..|+++++++|++. .++..+|.++...|++++|..++ +++++.+|.++..+..++
T Consensus 358 ~~~~~~Al~l~P~~~------~a~~~lg~~l~~~G~~~eAi~~~------------------~~Al~l~P~~~~~~~~~~ 413 (553)
T PRK12370 358 SLLFKQANLLSPISA------DIKYYYGWNLFMAGQLEEALQTI------------------NECLKLDPTRAAAGITKL 413 (553)
T ss_pred HHHHHHHHHhCCCCH------HHHHHHHHHHHHCCCHHHHHHHH------------------HHHHhcCCCChhhHHHHH
Confidence 888888888888888 66777888888888888885555 888888888777766666
Q ss_pred HHHHHhcCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHHHHHhcCCCCCC
Q 002375 648 LLLLRLNCQKAAMRCLRLARNHS-SSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPES 726 (929)
Q Consensus 648 ~~~~~~g~~~~A~~~l~~al~~~-p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~l~p~~~a~~~l~~~l~~~~~~~~~ 726 (929)
.+++..|++++|+..+++++... |+++..+..+|.++...|++++|+..++++....|+.
T Consensus 414 ~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~------------------- 474 (553)
T PRK12370 414 WITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITG------------------- 474 (553)
T ss_pred HHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchh-------------------
Confidence 66777888888888888887664 6677778888888888888888888887776666654
Q ss_pred hHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcCC--ChHHHHHHHHHHHHhCCHHHHHHHHH
Q 002375 727 STYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKAAYDEMT 804 (929)
Q Consensus 727 ~~~a~~~~~~Al~~~~~~l~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~--~~~a~~~la~~~~~~g~~~~A~~~~~ 804 (929)
..+...++..|...| ++|...+++.++.. .+.-....+.+|...|+.+.+... +
T Consensus 475 ---------------------~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~ 530 (553)
T PRK12370 475 ---------------------LIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-N 530 (553)
T ss_pred ---------------------HHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-H
Confidence 222444555555555 35555555555441 111122266667777777766665 5
Q ss_pred HHHHH
Q 002375 805 KLLEK 809 (929)
Q Consensus 805 ~al~~ 809 (929)
++.+.
T Consensus 531 ~~~~~ 535 (553)
T PRK12370 531 KFKNE 535 (553)
T ss_pred Hhhcc
Confidence 55443
No 58
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.74 E-value=5.2e-14 Score=173.48 Aligned_cols=368 Identities=12% Similarity=-0.006 Sum_probs=227.1
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccC--CHhHHHHHHHHHHHhccHHHHHHHHHHHHh
Q 002375 499 EKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL--SVDCLELRAWLFIAADDYESALRDTLALLA 576 (929)
Q Consensus 499 ~Ai~~~~~al~l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~a~~~~~~g~~~eA~~~~~~al~ 576 (929)
+|...+..... | +...|..+-..+.+.|+++.|...|+++.+... +...+..+...|.+.|+.++|...|+++.+
T Consensus 424 eAl~lf~~M~~--p-d~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~ 500 (1060)
T PLN03218 424 EAFRFAKLIRN--P-TLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVN 500 (1060)
T ss_pred HHHHHHHHcCC--C-CHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHH
Confidence 66665554433 3 455666666677777777777777777765443 445567777777777777777777777765
Q ss_pred hcCC-chhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcC-CCChHHHHHHHHHHHHhc
Q 002375 577 LESN-YMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLIND-PGKSFLRFRQSLLLLRLN 654 (929)
Q Consensus 577 ~~p~-~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~d~~~al~~~~~al~~~-p~~~~~~~~lg~~~~~~g 654 (929)
.... +. ..+..+...+...|++++|...+ .++.... ..+...|..+...+.+.|
T Consensus 501 ~Gv~Pdv------vTynaLI~gy~k~G~~eeAl~lf------------------~~M~~~Gv~PD~vTYnsLI~a~~k~G 556 (1060)
T PLN03218 501 AGVEANV------HTFGALIDGCARAGQVAKAFGAY------------------GIMRSKNVKPDRVVFNALISACGQSG 556 (1060)
T ss_pred cCCCCCH------HHHHHHHHHHHHCcCHHHHHHHH------------------HHHHHcCCCCCHHHHHHHHHHHHHCC
Confidence 4321 22 44555666667777777774444 5554432 123556777777777777
Q ss_pred CHHHHHHHHHHHHhc----CCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--cchHHHHHHHHHHHhcCCCCCChH
Q 002375 655 CQKAAMRCLRLARNH----SSSEHERLVYEGWILYDTGHREEALSRAEKSISIE--RTFEAFFLKAYILADTNLDPESST 728 (929)
Q Consensus 655 ~~~~A~~~l~~al~~----~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~l~--p~~~a~~~l~~~l~~~~~~~~~~~ 728 (929)
++++|.+.|+++... .|+ ...+..+...|.+.|++++|.+.|+++.+.+ |+...|..+...+...+
T Consensus 557 ~~deA~~lf~eM~~~~~gi~PD-~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G------- 628 (1060)
T PLN03218 557 AVDRAFDVLAEMKAETHPIDPD-HITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKG------- 628 (1060)
T ss_pred CHHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcC-------
Confidence 777777777777542 343 4566667777777777777777777777654 22266666666666666
Q ss_pred HHHHHHHHHhhchhccCc----hh-HHHHHHHHHHHHcCCHHHHHHHHHHHHcC---CChHHHHHHHHHHHHhCCHHHHH
Q 002375 729 YVIQLLEEALRCPSDGLR----KG-QALNNLGSIYVECGKLDQAENCYINALDI---KHTRAHQGLARVYYLKNELKAAY 800 (929)
Q Consensus 729 ~a~~~~~~Al~~~~~~l~----~~-~a~~~lg~~~~~~g~~~eA~~~~~~al~~---~~~~a~~~la~~~~~~g~~~~A~ 800 (929)
.+++|++.+.+..+ |. ..|..+...+...|++++|.+.++.+.+. .+..++..+...|.+.|++++|.
T Consensus 629 ----~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~ 704 (1060)
T PLN03218 629 ----DWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKAL 704 (1060)
T ss_pred ----CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHH
Confidence 56666666655432 22 56666777777777777777777777665 23456677777777777777777
Q ss_pred HHHHHHHHH--ccCCHHHHHHHh----hcCCHHHHHHHHHHHHhc--CCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 002375 801 DEMTKLLEK--AQYSASAFEKRS----EYSDREMAKNDLNMATQL--DPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIA 872 (929)
Q Consensus 801 ~~~~~al~~--~p~~~~~~~~lg----~~~~~~~A~~~~~~al~l--~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~ 872 (929)
+.|+++.+. .| +...|..+. ..|+.++|.+.|++.... .| +...|..+...+.+.|++++|...+.++++
T Consensus 705 ~lf~eM~~~g~~P-dvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~P-d~~Ty~sLL~a~~k~G~le~A~~l~~~M~k 782 (1060)
T PLN03218 705 ELYEDIKSIKLRP-TVSTMNALITALCEGNQLPKALEVLSEMKRLGLCP-NTITYSILLVASERKDDADVGLDLLSQAKE 782 (1060)
T ss_pred HHHHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 777766543 23 233343333 557777777777766543 23 445566666677777777777777777765
Q ss_pred cC--CCchHHHHH-HHHHHHcCCHHHHHHHHHHHhccCCCC
Q 002375 873 FK--PDLQMLHLR-AAFYESIGDLTSAIRDSQAALCLDPNH 910 (929)
Q Consensus 873 ~~--p~~~~~~~l-a~~~~~~g~~~~A~~~~~~al~l~P~~ 910 (929)
.. |+...+..+ +.+. +++++|....+..+..++.+
T Consensus 783 ~Gi~pd~~tynsLIglc~---~~y~ka~~l~~~v~~f~~g~ 820 (1060)
T PLN03218 783 DGIKPNLVMCRCITGLCL---RRFEKACALGEPVVSFDSGR 820 (1060)
T ss_pred cCCCCCHHHHHHHHHHHH---HHHHHHhhhhhhhhhhhccc
Confidence 43 333333322 3221 34566666555555554433
No 59
>PRK12370 invasion protein regulator; Provisional
Probab=99.73 E-value=1e-15 Score=180.48 Aligned_cols=271 Identities=12% Similarity=-0.026 Sum_probs=149.5
Q ss_pred HHHHHHHHHH---hccHHHHHHHHHHHHhhcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHH
Q 002375 551 LELRAWLFIA---ADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLA 627 (929)
Q Consensus 551 ~~~~a~~~~~---~g~~~eA~~~~~~al~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~d~~~al~ 627 (929)
++.+|..++. .+++++|+..|+++++++|++. .++..++.++...+.+.... ...+...++.
T Consensus 261 ~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a------~a~~~La~~~~~~~~~g~~~---------~~~~~~~A~~ 325 (553)
T PRK12370 261 VYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSI------APYCALAECYLSMAQMGIFD---------KQNAMIKAKE 325 (553)
T ss_pred HHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccH------HHHHHHHHHHHHHHHcCCcc---------cchHHHHHHH
Confidence 4445544332 3556777777888877777777 45555555554332211000 0001122355
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch
Q 002375 628 VINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF 707 (929)
Q Consensus 628 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~l~p~~ 707 (929)
.++++++.+|+++.++..+|.++...|++++|+..|+++++++|+++.+++.+|.++...|++++|+..++++++++|.+
T Consensus 326 ~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~ 405 (553)
T PRK12370 326 HAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTR 405 (553)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Confidence 55555666666666666666666666666666666666666666666666666666666666666666666666655544
Q ss_pred HHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC---CChHHHH
Q 002375 708 EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI---KHTRAHQ 784 (929)
Q Consensus 708 ~a~~~l~~~l~~~~~~~~~~~~a~~~~~~Al~~~~~~l~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~---~~~~a~~ 784 (929)
..++..++.++...|++++|+..+++++.. +++.++.
T Consensus 406 ----------------------------------------~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~ 445 (553)
T PRK12370 406 ----------------------------------------AAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLS 445 (553)
T ss_pred ----------------------------------------hhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHH
Confidence 111223333444455555555555555543 2334455
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHH
Q 002375 785 GLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAV 864 (929)
Q Consensus 785 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~ 864 (929)
.+|.++...|++++|...+.+ .....|....++..++..|...|+ +|.
T Consensus 446 ~la~~l~~~G~~~eA~~~~~~------------------------------~~~~~~~~~~~~~~l~~~~~~~g~--~a~ 493 (553)
T PRK12370 446 MQVMFLSLKGKHELARKLTKE------------------------------ISTQEITGLIAVNLLYAEYCQNSE--RAL 493 (553)
T ss_pred HHHHHHHhCCCHHHHHHHHHH------------------------------hhhccchhHHHHHHHHHHHhccHH--HHH
Confidence 555555555555555555544 444445555566677777777773 666
Q ss_pred HHHHHHHhcCCCch-HHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 002375 865 EELSKAIAFKPDLQ-MLHLRAAFYESIGDLTSAIRDSQAALCLDPN 909 (929)
Q Consensus 865 ~~l~kal~~~p~~~-~~~~la~~~~~~g~~~~A~~~~~~al~l~P~ 909 (929)
..+++.++.....+ .....+.+|.-.|+.+.|..+ +++.+.+..
T Consensus 494 ~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~ 538 (553)
T PRK12370 494 PTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNEDNI 538 (553)
T ss_pred HHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhccchH
Confidence 66666554332222 222467777778888887777 766665443
No 60
>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.73 E-value=6.9e-18 Score=156.98 Aligned_cols=141 Identities=21% Similarity=0.301 Sum_probs=121.7
Q ss_pred CCCCCCEEEEEc---CeEEEehhHHHhccCHHHHHHhcCCCCcCCCCeeEecCCCCCHHHHHHHhhhhccCCCCC-CCHh
Q 002375 214 LEEDDSVTFCVR---DKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDL-FCPG 289 (929)
Q Consensus 214 ~~~~~~v~~~v~---~~~~~~hr~iLaa~S~~F~~m~~~~~~e~~~~~i~~~~~~~~~~~~~~~l~~~yt~~~~~-~~~~ 289 (929)
....++|+|.++ ++.|+|||.|||+||++++ |.++-.|. ..+..+ +|+++++|..+++||||++++. ...+
T Consensus 63 k~qfSDlk~K~~gns~k~i~AHKfVLAARsD~Wk--faN~~dek-se~~~~--dDad~Ea~~t~iRWIYTDEidfk~dD~ 137 (280)
T KOG4591|consen 63 KEQFSDLKFKFAGNSDKHIPAHKFVLAARSDFWK--FANGGDEK-SEELDL--DDADFEAFHTAIRWIYTDEIDFKEDDE 137 (280)
T ss_pred cccccceeEEecCCccccCchhhhhhhhhcchhh--hccCCCcc-hhhhcc--cccCHHHHHHhheeeeccccccccchH
Confidence 345556999998 5789999999999999987 45554443 345666 8999999999999999999994 4566
Q ss_pred HHHHHHHHhchhChHhHHHHHHHHHHhhcCChhhHHHHHHHHHhhChHHHHHHHHHHHhhhhhhhcCcchhh
Q 002375 290 IVLELLSFANRFCCEEMKSACDAHLASLVGDIEDALILIDYGLEERATLLVASCLQVLLRELPSSLYNPKVM 361 (929)
Q Consensus 290 ~~~~ll~~A~~~~~~~l~~~C~~~l~~~~~~~~n~~~~~~~a~~~~~~~L~~~c~~~i~~~~~~~~~~~~f~ 361 (929)
.++++..+|++|+++-|+..|++-+...++ ++||+.++++|++.++..|...|-..|..+++++- .+.|.
T Consensus 138 ~L~el~e~An~FqLe~Lke~C~k~l~a~l~-V~NCIk~Ye~AEe~n~~qL~n~~~eiIA~~W~dL~-~a~Fa 207 (280)
T KOG4591|consen 138 FLLELCELANRFQLELLKERCEKGLGALLH-VDNCIKFYEFAEELNARQLMNVAAEIIAGAWDDLG-KADFA 207 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHhh-HhhHHHHHHHHHHhhHHHHHHHHHHHHHhhccccC-hHHHH
Confidence 789999999999999999999999999999 99999999999999999999999999999998763 34454
No 61
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.73 E-value=5.7e-16 Score=167.58 Aligned_cols=144 Identities=19% Similarity=0.198 Sum_probs=98.0
Q ss_pred HHHHHHHHhcCC----CChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002375 626 LAVINQMLINDP----GKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSI 701 (929)
Q Consensus 626 l~~~~~al~~~p----~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al 701 (929)
+..+.+++...| ..+..|+.+|.+|...|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+..|++++
T Consensus 46 i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al 125 (296)
T PRK11189 46 LARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVL 125 (296)
T ss_pred HHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 444566665333 2356688888888888888888888888888888888888888888888888888888888888
Q ss_pred hhccchHHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCChH
Q 002375 702 SIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIKHTR 781 (929)
Q Consensus 702 ~l~p~~~a~~~l~~~l~~~~~~~~~~~~a~~~~~~Al~~~~~~l~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~~~ 781 (929)
+++|++ ..++.++|.++...|++++|++.|+++++.++.+
T Consensus 126 ~l~P~~----------------------------------------~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~ 165 (296)
T PRK11189 126 ELDPTY----------------------------------------NYAYLNRGIALYYGGRYELAQDDLLAFYQDDPND 165 (296)
T ss_pred HhCCCC----------------------------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 888776 4456667777777777777777777777764433
Q ss_pred HHHHHH-HHHHHhCCHHHHHHHHHHHHHH
Q 002375 782 AHQGLA-RVYYLKNELKAAYDEMTKLLEK 809 (929)
Q Consensus 782 a~~~la-~~~~~~g~~~~A~~~~~~al~~ 809 (929)
.+..+. .+....+++++|+..+.+.+..
T Consensus 166 ~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 166 PYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 221111 1233445666666666555443
No 62
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.73 E-value=1.2e-15 Score=165.17 Aligned_cols=228 Identities=17% Similarity=0.139 Sum_probs=180.1
Q ss_pred cCHHHHHHHHHHHHhc---CCc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHHHHHhcCCCCCChHH
Q 002375 654 NCQKAAMRCLRLARNH---SSS-EHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTY 729 (929)
Q Consensus 654 g~~~~A~~~l~~al~~---~p~-~~~~~~~lg~~~~~~g~~~eA~~~~~~al~l~p~~~a~~~l~~~l~~~~~~~~~~~~ 729 (929)
+..+.++..+.+++.. +|. .+..|+.+|.++...|++++|+..|+++++++|++
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~---------------------- 97 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDM---------------------- 97 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC----------------------
Confidence 4668889999999964 333 37789999999999999999999999999999988
Q ss_pred HHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC--CChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 002375 730 VIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI--KHTRAHQGLARVYYLKNELKAAYDEMTKLL 807 (929)
Q Consensus 730 a~~~~~~Al~~~~~~l~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~--~~~~a~~~la~~~~~~g~~~~A~~~~~~al 807 (929)
..+++++|.++...|++++|+..|++++++ ++..++.++|.++...|++++|++.+++++
T Consensus 98 ------------------~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al 159 (296)
T PRK11189 98 ------------------ADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFY 159 (296)
T ss_pred ------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 567899999999999999999999999999 456899999999999999999999999999
Q ss_pred HHccCCHH--HHHHHh-hcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHH--HHHHHHHH----HhcCCCch
Q 002375 808 EKAQYSAS--AFEKRS-EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVE--AVEELSKA----IAFKPDLQ 878 (929)
Q Consensus 808 ~~~p~~~~--~~~~lg-~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~e--A~~~l~ka----l~~~p~~~ 878 (929)
+.+|+++. .|..+. ..++.++|+..+.+++...+... |. .+.++...|+..+ +++.+.+. .++.|+..
T Consensus 160 ~~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~--~~-~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ 236 (296)
T PRK11189 160 QDDPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDKEQ--WG-WNIVEFYLGKISEETLMERLKAGATDNTELAERLC 236 (296)
T ss_pred HhCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCccc--cH-HHHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHH
Confidence 99999874 333333 56789999999988775543222 22 3455555665543 33333332 24444444
Q ss_pred -HHHHHHHHHHHcCCHHHHHHHHHHHhccCC-CCHHHHHHHHHHHhhh
Q 002375 879 -MLHLRAAFYESIGDLTSAIRDSQAALCLDP-NHMETLDLYNRARDQA 924 (929)
Q Consensus 879 -~~~~la~~~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~~~~l~~~~ 924 (929)
.++++|.++..+|++++|+.+|++|++.+| ++.+....+-.+....
T Consensus 237 ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~~~~e~~~~~ 284 (296)
T PRK11189 237 ETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRYALLELALLG 284 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHH
Confidence 455889999999999999999999999996 7777776666555443
No 63
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=99.71 E-value=8.5e-17 Score=170.22 Aligned_cols=143 Identities=20% Similarity=0.286 Sum_probs=132.6
Q ss_pred CEEEEEcC-----eEEEehhHHHhccCHHHHHHhcCCCCcCCCCeeEecCCCCCHHHHHHHhhhhccCCCCCCCHhHHHH
Q 002375 219 SVTFCVRD-----KEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFCPGIVLE 293 (929)
Q Consensus 219 ~v~~~v~~-----~~~~~hr~iLaa~S~~F~~m~~~~~~e~~~~~i~~~~~~~~~~~~~~~l~~~yt~~~~~~~~~~~~~ 293 (929)
+|+|+|++ ..|||||.|||..|++|.+||+|++.|+...+|.+ ++++|.+|..+|+|||++.+. +..++++.
T Consensus 116 dv~fivg~~~~~~q~~paHk~vla~gS~VFdaMf~g~~a~~~s~ei~l--pdvepaaFl~~L~flYsdev~-~~~dtvi~ 192 (521)
T KOG2075|consen 116 DVHFIVGEEDGGSQRIPAHKLVLADGSDVFDAMFYGGLAEDASLEIRL--PDVEPAAFLAFLRFLYSDEVK-LAADTVIT 192 (521)
T ss_pred eeEEEeccCCCcccccchhhhhhhcchHHHHHHhccCcccccCceeec--CCcChhHhHHHHHHHhcchhh-hhHHHHHH
Confidence 49999974 57999999999999999999999999998889999 999999999999999999999 99999999
Q ss_pred HHHHhchhChHhHHHHHHHHHHhhcCChhhHHHHHHH-HHhhChHHHHHHHHHHHhhhhhhhcCcchhhhhhc
Q 002375 294 LLSFANRFCCEEMKSACDAHLASLVGDIEDALILIDY-GLEERATLLVASCLQVLLRELPSSLYNPKVMKIFC 365 (929)
Q Consensus 294 ll~~A~~~~~~~l~~~C~~~l~~~~~~~~n~~~~~~~-a~~~~~~~L~~~c~~~i~~~~~~~~~~~~f~~L~~ 365 (929)
+|.+|++|.++.|.+.|.+||+..+. .+|.+..+-- |..++-++|...|.+.|..+|.+.+..++|.++=|
T Consensus 193 tl~~AkKY~VpaLer~CVkflr~~l~-~~naf~~L~q~A~lf~ep~Li~~c~e~id~~~~~al~~EGf~did~ 264 (521)
T KOG2075|consen 193 TLYAAKKYLVPALERQCVKFLRKNLM-ADNAFLELFQRAKLFDEPSLISICLEVIDKSFEDALTPEGFCDIDS 264 (521)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhcC-ChHHHHHHHHHHHhhcCHHHHHHHHHHhhhHHHhhhCccceeehhh
Confidence 99999999999999999999999999 6666655554 99999999999999999999999999999987643
No 64
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=1.1e-13 Score=143.94 Aligned_cols=359 Identities=13% Similarity=0.028 Sum_probs=262.3
Q ss_pred hHHHHhcccHHHHHHHHHHHHhcCccccHH-HHHHHHHHhchHHHHHHHHHhhhcCCCcchhhhH-HHHHhhhhh----H
Q 002375 426 GCVMFEREEYKDACYYFEAAADAGHIYSLA-GLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQ-ERSLYNLGR----E 499 (929)
Q Consensus 426 G~~~~~~g~y~~A~~~f~~al~~~~~~~~a-~la~~~~~~g~a~~a~~~~~~l~~~~~~~~~~~~-~~~l~~~~~----~ 499 (929)
++.+-.-++-.++.-.|...+...|--... +......-.|....+......-.++..++-|.+. +.+..+.++ .
T Consensus 137 a~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~ 216 (564)
T KOG1174|consen 137 ARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELGVNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDAS 216 (564)
T ss_pred HHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHhhcchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhh
Confidence 333333333345555555555544432221 1111222233333333322222333344444432 233333443 5
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccC-CHhHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Q 002375 500 KIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLALLALE 578 (929)
Q Consensus 500 Ai~~~~~al~l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~~g~~~eA~~~~~~al~~~ 578 (929)
+..++-.-...-|++...+..+|.+++..|++.+|+..|+++..++| .....-..|.++...|+++.-.......+...
T Consensus 217 ~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~ 296 (564)
T KOG1174|consen 217 QTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV 296 (564)
T ss_pred hHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh
Confidence 56667777788899999999999999999999999999999998887 55556667888888999999888888888877
Q ss_pred CCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHH
Q 002375 579 SNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKA 658 (929)
Q Consensus 579 p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~d~~~al~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~ 658 (929)
.... .-+...+.+....+++..|..+. +++++.+|++..++...|.++...++.++
T Consensus 297 ~~ta------~~wfV~~~~l~~~K~~~rAL~~~------------------eK~I~~~~r~~~alilKG~lL~~~~R~~~ 352 (564)
T KOG1174|consen 297 KYTA------SHWFVHAQLLYDEKKFERALNFV------------------EKCIDSEPRNHEALILKGRLLIALERHTQ 352 (564)
T ss_pred hcch------hhhhhhhhhhhhhhhHHHHHHHH------------------HHHhccCcccchHHHhccHHHHhccchHH
Confidence 5544 33344555556666788885555 99999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch-HHHHHHH-HHHHhcCCCCCChHHHHHHHHH
Q 002375 659 AMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKA-YILADTNLDPESSTYVIQLLEE 736 (929)
Q Consensus 659 A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~l~p~~-~a~~~l~-~~l~~~~~~~~~~~~a~~~~~~ 736 (929)
|+-.|+.|..+.|..-+.|..+-.+|...|++.||....+.+++.-|.+ .+...+| ..+. .++... ++
T Consensus 353 A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~---~dp~~r-------EK 422 (564)
T KOG1174|consen 353 AVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLF---PDPRMR-------EK 422 (564)
T ss_pred HHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeec---cCchhH-------HH
Confidence 9999999999999999999999999999999999999999999998888 5555443 2221 233333 44
Q ss_pred HhhchhccC--chh--HHHHHHHHHHHHcCCHHHHHHHHHHHHcC-CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcc
Q 002375 737 ALRCPSDGL--RKG--QALNNLGSIYVECGKLDQAENCYINALDI-KHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQ 811 (929)
Q Consensus 737 Al~~~~~~l--~~~--~a~~~lg~~~~~~g~~~eA~~~~~~al~~-~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p 811 (929)
|.+.+++++ +|+ .+-..++..+...|.+++++..+++.+.. .+...+..||.++...+.+++|.+.|..++.++|
T Consensus 423 AKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP 502 (564)
T KOG1174|consen 423 AKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDP 502 (564)
T ss_pred HHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCc
Confidence 444455543 343 67788999999999999999999999988 5567889999999999999999999999999999
Q ss_pred CCHHHHH
Q 002375 812 YSASAFE 818 (929)
Q Consensus 812 ~~~~~~~ 818 (929)
++.....
T Consensus 503 ~~~~sl~ 509 (564)
T KOG1174|consen 503 KSKRTLR 509 (564)
T ss_pred cchHHHH
Confidence 9876643
No 65
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.70 E-value=3.9e-16 Score=157.24 Aligned_cols=203 Identities=13% Similarity=0.044 Sum_probs=128.0
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHH
Q 002375 552 ELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQ 631 (929)
Q Consensus 552 ~~~a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~d~~~al~~~~~ 631 (929)
..+|.||+.+|-+.+|.+.++..++..|.- +...++..+|....+...|.. .+.+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~-------dTfllLskvY~ridQP~~AL~------------------~~~~ 281 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHP-------DTFLLLSKVYQRIDQPERALL------------------VIGE 281 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCch-------hHHHHHHHHHHHhccHHHHHH------------------HHhh
Confidence 456777777777777777777777765432 445556677777666666633 3366
Q ss_pred HHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHH
Q 002375 632 MLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFF 711 (929)
Q Consensus 632 al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~l~p~~~a~~ 711 (929)
.++..|.+...+..++.++..++++++|.++|+.+++.+|.+.++.-.+|.-|+-.++.+-|+.+|++.+++.-.+
T Consensus 282 gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~s---- 357 (478)
T KOG1129|consen 282 GLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQS---- 357 (478)
T ss_pred hhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCC----
Confidence 6667777777777777777777777777777777777777777776666777777777777777777776654333
Q ss_pred HHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC-C----ChHHHHHH
Q 002375 712 LKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI-K----HTRAHQGL 786 (929)
Q Consensus 712 ~l~~~l~~~~~~~~~~~~a~~~~~~Al~~~~~~l~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~-~----~~~a~~~l 786 (929)
++.+.|+|.+.+..+++|-++..|++|+.. . ..++|+++
T Consensus 358 ------------------------------------peLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNl 401 (478)
T KOG1129|consen 358 ------------------------------------PELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNL 401 (478)
T ss_pred ------------------------------------hHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhcc
Confidence 445666666666666666666666666655 1 22455555
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHH
Q 002375 787 ARVYYLKNELKAAYDEMTKLLEKAQYSASAFEK 819 (929)
Q Consensus 787 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 819 (929)
|.+....|++.-|...|+-++..++++..++.+
T Consensus 402 g~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnN 434 (478)
T KOG1129|consen 402 GFVAVTIGDFNLAKRCFRLALTSDAQHGEALNN 434 (478)
T ss_pred ceeEEeccchHHHHHHHHHHhccCcchHHHHHh
Confidence 555555555554444444444444443333333
No 66
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=7e-16 Score=160.58 Aligned_cols=181 Identities=20% Similarity=0.182 Sum_probs=123.1
Q ss_pred CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch-HHHHHHHH
Q 002375 637 PGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAY 715 (929)
Q Consensus 637 p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~l~p~~-~a~~~l~~ 715 (929)
|.-..+....+.++..+|++++|...--..+++++.+.++++..|.+++-.++.+.|+..|++++.++|+. .+- .
T Consensus 166 pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk----~ 241 (486)
T KOG0550|consen 166 PACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSK----S 241 (486)
T ss_pred chhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHH----h
Confidence 33445667788899999999999999999999999999999999999999999999999999999999987 110 0
Q ss_pred HHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCh------HHHHHHHHH
Q 002375 716 ILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIKHT------RAHQGLARV 789 (929)
Q Consensus 716 ~l~~~~~~~~~~~~a~~~~~~Al~~~~~~l~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~~------~a~~~la~~ 789 (929)
+.. . .+.-..+..-|+-....|+|..|.++|..+|.++|. ..|.++|.+
T Consensus 242 ~~~--------------~-----------~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v 296 (486)
T KOG0550|consen 242 ASM--------------M-----------PKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALV 296 (486)
T ss_pred Hhh--------------h-----------HHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhh
Confidence 000 0 001123444555555555555555555555555322 123333333
Q ss_pred HHHhCCHHHHHHHHHHHHHHccCCHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHH
Q 002375 790 YYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSK 869 (929)
Q Consensus 790 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~k 869 (929)
... +|+..+|+...+.++.++|....++...|.+++..++|++|++.|++
T Consensus 297 ~~r------------------------------Lgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~ 346 (486)
T KOG0550|consen 297 NIR------------------------------LGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEK 346 (486)
T ss_pred hcc------------------------------cCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333 34444555555555556666667777888888888888888888888
Q ss_pred HHhcCCC
Q 002375 870 AIAFKPD 876 (929)
Q Consensus 870 al~~~p~ 876 (929)
+++...+
T Consensus 347 a~q~~~s 353 (486)
T KOG0550|consen 347 AMQLEKD 353 (486)
T ss_pred HHhhccc
Confidence 8777665
No 67
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.69 E-value=8.3e-14 Score=158.30 Aligned_cols=302 Identities=12% Similarity=0.034 Sum_probs=224.2
Q ss_pred HHHHHHHhhHHHHhcccHHHHHHHHHHHHhcCccccHH--HHHHHHHHhchHHHHHHHHHhhhcCCCcchhhhHHHHHhh
Q 002375 418 RMLALHQLGCVMFEREEYKDACYYFEAAADAGHIYSLA--GLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYN 495 (929)
Q Consensus 418 ~a~~~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~~~a--~la~~~~~~g~a~~a~~~~~~l~~~~~~~~~~~~~~~l~~ 495 (929)
++......|...+..|+|+.|.+.+.++.+..|..... ..+++...+|
T Consensus 83 k~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g------------------------------ 132 (409)
T TIGR00540 83 KAQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRG------------------------------ 132 (409)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCC------------------------------
Confidence 45566778999999999999999999999887765442 1222222222
Q ss_pred hhhHHHHHHHHHHhcCCCCh-HHHHHHHHHHHHhCCHHHHHHHHHHHhcccC-CHhHHHHHHHHHHHhccHHHHHHHHHH
Q 002375 496 LGREKIVDLNYASELDPTLS-FPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLA 573 (929)
Q Consensus 496 ~~~~Ai~~~~~al~l~P~~~-~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~~g~~~eA~~~~~~ 573 (929)
+.+.|...+.++.+..|+.. ......+.++...|++++|...+++..+..| ++..+...+.++...|++++|+..+.+
T Consensus 133 ~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~ 212 (409)
T TIGR00540 133 DEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDN 212 (409)
T ss_pred CHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 33367778888888888875 4666679999999999999999999999988 888899999999999999999999999
Q ss_pred HHhhcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCC----CChHHHHHHHHH
Q 002375 574 LLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDP----GKSFLRFRQSLL 649 (929)
Q Consensus 574 al~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~d~~~al~~~~~al~~~p----~~~~~~~~lg~~ 649 (929)
..+....++............+.+ ..+..+.+ ...+.++....| +++.++...+..
T Consensus 213 l~k~~~~~~~~~~~l~~~a~~~~l--~~~~~~~~------------------~~~L~~~~~~~p~~~~~~~~l~~~~a~~ 272 (409)
T TIGR00540 213 MAKAGLFDDEEFADLEQKAEIGLL--DEAMADEG------------------IDGLLNWWKNQPRHRRHNIALKIALAEH 272 (409)
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHH--HHHHHhcC------------------HHHHHHHHHHCCHHHhCCHHHHHHHHHH
Confidence 998754444111100111111111 11111212 222355556566 588899999999
Q ss_pred HHHhcCHHHHHHHHHHHHhcCCchHHHH--HHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHHHHHhcCCCCCCh
Q 002375 650 LLRLNCQKAAMRCLRLARNHSSSEHERL--VYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESS 727 (929)
Q Consensus 650 ~~~~g~~~~A~~~l~~al~~~p~~~~~~--~~lg~~~~~~g~~~eA~~~~~~al~l~p~~~a~~~l~~~l~~~~~~~~~~ 727 (929)
+...|++++|...++++++..|++.... ..........++.+.+++.++++++..|++
T Consensus 273 l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~-------------------- 332 (409)
T TIGR00540 273 LIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDK-------------------- 332 (409)
T ss_pred HHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCC--------------------
Confidence 9999999999999999999998886532 333344445678888899999999888877
Q ss_pred HHHHHHHHHHhhchhccCchh--HHHHHHHHHHHHcCCHHHHHHHHH--HHHcC-CChHHHHHHHHHHHHhCCHHHHHHH
Q 002375 728 TYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVECGKLDQAENCYI--NALDI-KHTRAHQGLARVYYLKNELKAAYDE 802 (929)
Q Consensus 728 ~~a~~~~~~Al~~~~~~l~~~--~a~~~lg~~~~~~g~~~eA~~~~~--~al~~-~~~~a~~~la~~~~~~g~~~~A~~~ 802 (929)
+ .....+|.++...|++++|.++|+ ++++. ..+..+..+|.++...|+.++|.+.
T Consensus 333 --------------------~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~ 392 (409)
T TIGR00540 333 --------------------PKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAM 392 (409)
T ss_pred --------------------hhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3 456789999999999999999999 46665 3344567999999999999999999
Q ss_pred HHHHHHH
Q 002375 803 MTKLLEK 809 (929)
Q Consensus 803 ~~~al~~ 809 (929)
+++++..
T Consensus 393 ~~~~l~~ 399 (409)
T TIGR00540 393 RQDSLGL 399 (409)
T ss_pred HHHHHHH
Confidence 9998754
No 68
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.69 E-value=7e-15 Score=142.81 Aligned_cols=206 Identities=18% Similarity=0.115 Sum_probs=178.5
Q ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Q 002375 640 SFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILAD 719 (929)
Q Consensus 640 ~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~l~p~~~a~~~l~~~l~~ 719 (929)
..+...+|.-|+..|++..|...++++++++|++..+|..++.+|...|+.+.|-+.|++|++++|++
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~------------ 102 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNN------------ 102 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCc------------
Confidence 35788999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC----CChHHHHHHHHHHHHhCC
Q 002375 720 TNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI----KHTRAHQGLARVYYLKNE 795 (929)
Q Consensus 720 ~~~~~~~~~~a~~~~~~Al~~~~~~l~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~----~~~~a~~~la~~~~~~g~ 795 (929)
+++++|.|..++.+|++++|...|++|+.. .+.+++.++|.|..+.|+
T Consensus 103 ----------------------------GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq 154 (250)
T COG3063 103 ----------------------------GDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQ 154 (250)
T ss_pred ----------------------------cchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCC
Confidence 778999999999999999999999999988 567899999999999998
Q ss_pred HHHHHHHHHHHHHHccCCHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 002375 796 LKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKP 875 (929)
Q Consensus 796 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p 875 (929)
++.|...|+++++.+ |+.+.+...++...++.|+|-.|..++++....-+
T Consensus 155 ~~~A~~~l~raL~~d------------------------------p~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~ 204 (250)
T COG3063 155 FDQAEEYLKRALELD------------------------------PQFPPALLELARLHYKAGDYAPARLYLERYQQRGG 204 (250)
T ss_pred chhHHHHHHHHHHhC------------------------------cCCChHHHHHHHHHHhcccchHHHHHHHHHHhccc
Confidence 888888777766655 55566667778888899999999999988877665
Q ss_pred Cc-hHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHH
Q 002375 876 DL-QMLHLRAAFYESIGDLTSAIRDSQAALCLDPNHMETLD 915 (929)
Q Consensus 876 ~~-~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~ 915 (929)
-. ..+++...+-...||-+.|-++=.+.....|..++...
T Consensus 205 ~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~q~ 245 (250)
T COG3063 205 AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEYQT 245 (250)
T ss_pred ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHh
Confidence 44 34445577777889999888888888888898877543
No 69
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.68 E-value=9.5e-16 Score=154.48 Aligned_cols=242 Identities=15% Similarity=0.032 Sum_probs=219.1
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHhcccCCHhHHHHHHHHHHHhccHHHHHHHHHHHHhhcCCchhhhccccHHHHHHHHH
Q 002375 519 KYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLN 598 (929)
Q Consensus 519 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~a~~ll~~~~ 598 (929)
..+|.||++.|-+.+|.+.++.++...+.++.+..++.+|....+...|+..|.+.++..|.+. ..+.-.+.++
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~V------T~l~g~ARi~ 300 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDV------TYLLGQARIH 300 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchh------hhhhhhHHHH
Confidence 5789999999999999999999999999999999999999999999999999999999999998 4455678889
Q ss_pred HhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHH
Q 002375 599 HHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLV 678 (929)
Q Consensus 599 ~~~~~~~~A~~~l~l~~~~~~~d~~~al~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~ 678 (929)
..+++++.|.++. ..+++.+|.+.++..-+|.-|+.-++++-|+.+|++.+++.-.+++.+.
T Consensus 301 eam~~~~~a~~lY------------------k~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~ 362 (478)
T KOG1129|consen 301 EAMEQQEDALQLY------------------KLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFC 362 (478)
T ss_pred HHHHhHHHHHHHH------------------HHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHh
Confidence 9999999995555 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHH
Q 002375 679 YEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIY 758 (929)
Q Consensus 679 ~lg~~~~~~g~~~eA~~~~~~al~l~p~~~a~~~l~~~l~~~~~~~~~~~~a~~~~~~Al~~~~~~l~~~~a~~~lg~~~ 758 (929)
++|.+.+..++++-++..|++++....+. -+.+++|+|+|.+.
T Consensus 363 NigLCC~yaqQ~D~~L~sf~RAlstat~~-------------------------------------~~aaDvWYNlg~va 405 (478)
T KOG1129|consen 363 NIGLCCLYAQQIDLVLPSFQRALSTATQP-------------------------------------GQAADVWYNLGFVA 405 (478)
T ss_pred hHHHHHHhhcchhhhHHHHHHHHhhccCc-------------------------------------chhhhhhhccceeE
Confidence 99999999999999999999999764322 01257899999999
Q ss_pred HHcCCHHHHHHHHHHHHcC--CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHh
Q 002375 759 VECGKLDQAENCYINALDI--KHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS 821 (929)
Q Consensus 759 ~~~g~~~eA~~~~~~al~~--~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 821 (929)
...|++.-|..+|+-++.. ++..++.+||.+-.+.|+.++|...+..+-...|+-.+...+++
T Consensus 406 V~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~~~Nl~ 470 (478)
T KOG1129|consen 406 VTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEVTTNLQ 470 (478)
T ss_pred EeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcccccccccee
Confidence 9999999999999999988 67789999999999999999999999999999988766655554
No 70
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.68 E-value=1.7e-16 Score=171.25 Aligned_cols=265 Identities=18% Similarity=0.127 Sum_probs=77.5
Q ss_pred cCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhccc--C-CHhHHHHHHHHHHHhccHHHHHHHHHHHHhhcCCchhhhc
Q 002375 510 LDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFK--L-SVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHG 586 (929)
Q Consensus 510 l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~--~-~~~~~~~~a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~ 586 (929)
..|. .. .+.+|.++...|++++|++.+.+.+... + ++..+..+|.+....+++++|+..|++++..++.++
T Consensus 5 ~~~~-~~-~l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~---- 78 (280)
T PF13429_consen 5 FGPS-EE-ALRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANP---- 78 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccc-cc-cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc----
Confidence 4455 22 3355888888888888888886554333 2 556677777777888888888888888887776655
Q ss_pred cccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 002375 587 RVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLA 666 (929)
Q Consensus 587 ~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~d~~~al~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~a 666 (929)
.....+..+ ...+++++|...+ .++.+.. .++..+.....++...++++++...++++
T Consensus 79 --~~~~~l~~l-~~~~~~~~A~~~~------------------~~~~~~~-~~~~~l~~~l~~~~~~~~~~~~~~~l~~~ 136 (280)
T PF13429_consen 79 --QDYERLIQL-LQDGDPEEALKLA------------------EKAYERD-GDPRYLLSALQLYYRLGDYDEAEELLEKL 136 (280)
T ss_dssp -------------------------------------------------------------H-HHHTT-HHHHHHHHHHH
T ss_pred --ccccccccc-ccccccccccccc------------------ccccccc-cccchhhHHHHHHHHHhHHHHHHHHHHHH
Confidence 222223333 3445555553333 4444333 23444555555666666666666666665
Q ss_pred HhcC--CchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhcc
Q 002375 667 RNHS--SSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDG 744 (929)
Q Consensus 667 l~~~--p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~l~p~~~a~~~l~~~l~~~~~~~~~~~~a~~~~~~Al~~~~~~ 744 (929)
.... +.++..|..+|.++.+.|+.++|+..|+++++.+|++
T Consensus 137 ~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~------------------------------------- 179 (280)
T PF13429_consen 137 EELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDD------------------------------------- 179 (280)
T ss_dssp HH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT--------------------------------------
T ss_pred HhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-------------------------------------
Confidence 5433 4455666666666666666666666666666666655
Q ss_pred CchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC--CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHhh
Q 002375 745 LRKGQALNNLGSIYVECGKLDQAENCYINALDI--KHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSE 822 (929)
Q Consensus 745 l~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~--~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 822 (929)
..+...++.++...|+++++...+....+. .++..+..+|.++...|++++|+..+++
T Consensus 180 ---~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~----------------- 239 (280)
T PF13429_consen 180 ---PDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEK----------------- 239 (280)
T ss_dssp ---HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHH-----------------
T ss_pred ---HHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccc-----------------
Confidence 333455555555666666555555444443 3334555555555555555555555555
Q ss_pred cCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 002375 823 YSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIA 872 (929)
Q Consensus 823 ~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~ 872 (929)
+++.+|+++..+..+|.++...|+.++|...+.+++.
T Consensus 240 -------------~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 240 -------------ALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp -------------HHHHSTT-HHHHHHHHHHHT-----------------
T ss_pred -------------ccccccccccccccccccccccccccccccccccccc
Confidence 4555566667777888888888888888888888765
No 71
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.67 E-value=1.2e-15 Score=165.79 Aligned_cols=244 Identities=16% Similarity=0.152 Sum_probs=179.5
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch-HHHHHHHHHHHhcCC
Q 002375 644 FRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNL 722 (929)
Q Consensus 644 ~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~l~p~~-~a~~~l~~~l~~~~~ 722 (929)
+..|..+++.|+..+|.-.|+.++..+|.+.++|..||.+....++-..|+..++++++++|++ ++...++..+...+
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg- 367 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEG- 367 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhh-
Confidence 5678888888888888888888888888888888888888888888888888888888888888 88888888887776
Q ss_pred CCCChHHHHHHHHHHhhchhccCch--hHHHHHHHH---------HHHHcCCHHHHHHHHHHHHcC----CChHHHHHHH
Q 002375 723 DPESSTYVIQLLEEALRCPSDGLRK--GQALNNLGS---------IYVECGKLDQAENCYINALDI----KHTRAHQGLA 787 (929)
Q Consensus 723 ~~~~~~~a~~~~~~Al~~~~~~l~~--~~a~~~lg~---------~~~~~g~~~eA~~~~~~al~~----~~~~a~~~la 787 (929)
.-.+|++++.+-+.. ...+...+. -......+..-.+.|-.+... .+++++..||
T Consensus 368 ----------~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LG 437 (579)
T KOG1125|consen 368 ----------LQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLG 437 (579)
T ss_pred ----------hHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhH
Confidence 223333333322110 000100000 000001112223333333333 4678999999
Q ss_pred HHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHh----hcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHH
Q 002375 788 RVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS----EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEA 863 (929)
Q Consensus 788 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg----~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA 863 (929)
.+|...|+|++|++.|+.++...|++...|.++| .-.+.++|+..|.+|+++.|....+++++|..++..|.|++|
T Consensus 438 VLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA 517 (579)
T KOG1125|consen 438 VLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEA 517 (579)
T ss_pred HHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHH
Confidence 9999999999999999999999999999999999 446779999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCc-----------hHHHHHHHHHHHcCCHHHHHH
Q 002375 864 VEELSKAIAFKPDL-----------QMLHLRAAFYESIGDLTSAIR 898 (929)
Q Consensus 864 ~~~l~kal~~~p~~-----------~~~~~la~~~~~~g~~~~A~~ 898 (929)
++.|-.||.+.+.. ..|-.+=.++..+++.+-+..
T Consensus 518 ~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 518 VKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred HHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 99999999886641 123333355566666664433
No 72
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.67 E-value=1.8e-14 Score=150.32 Aligned_cols=201 Identities=17% Similarity=0.144 Sum_probs=168.5
Q ss_pred CChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHHHH
Q 002375 638 GKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYIL 717 (929)
Q Consensus 638 ~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~l~p~~~a~~~l~~~l 717 (929)
..+..+..+|..+...|++++|+..++++++.+|++..++..+|.++...|++++|+..++++++..|++
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---------- 98 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNN---------- 98 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----------
Confidence 3467889999999999999999999999999999999999999999999999999999999999988876
Q ss_pred HhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC----CChHHHHHHHHHHHHh
Q 002375 718 ADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI----KHTRAHQGLARVYYLK 793 (929)
Q Consensus 718 ~~~~~~~~~~~~a~~~~~~Al~~~~~~l~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~----~~~~a~~~la~~~~~~ 793 (929)
..++.++|.++...|++++|+..|++++.. .....+..+|.++...
T Consensus 99 ------------------------------~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 148 (234)
T TIGR02521 99 ------------------------------GDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKA 148 (234)
T ss_pred ------------------------------HHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHc
Confidence 345778889999999999999999999876 2345778888888888
Q ss_pred CCHHHHHHHHHHHHHHccCCHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 002375 794 NELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAF 873 (929)
Q Consensus 794 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~ 873 (929)
|++++|...+.+++...|+ ++.++..+|.++...|++++|+..+++++..
T Consensus 149 g~~~~A~~~~~~~~~~~~~------------------------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 198 (234)
T TIGR02521 149 GDFDKAEKYLTRALQIDPQ------------------------------RPESLLELAELYYLRGQYKDARAYLERYQQT 198 (234)
T ss_pred CCHHHHHHHHHHHHHhCcC------------------------------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 8888888877777766554 4455667788888889999999999988888
Q ss_pred CCCchHHH-HHHHHHHHcCCHHHHHHHHHHHhccCC
Q 002375 874 KPDLQMLH-LRAAFYESIGDLTSAIRDSQAALCLDP 908 (929)
Q Consensus 874 ~p~~~~~~-~la~~~~~~g~~~~A~~~~~~al~l~P 908 (929)
.|.++..+ .++.++...|+.++|....+.+....|
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 199 YNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLFP 234 (234)
T ss_pred CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence 77665444 568888888999999888887776654
No 73
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.67 E-value=1.6e-13 Score=155.10 Aligned_cols=295 Identities=13% Similarity=0.050 Sum_probs=222.7
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhcccCCHhHHHHH-HHHHHHhccHHHHHHHHHHHHhhcCCchhhhccccHHHHHHH
Q 002375 518 YKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELR-AWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKL 596 (929)
Q Consensus 518 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~a~~ll~~ 596 (929)
.+..|......|||+.|.+...+..+..+.|..++.. +......|+++.|...+.++.+.+|++... .....+.
T Consensus 87 ~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~-----~~l~~a~ 161 (398)
T PRK10747 87 QTEQALLKLAEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLP-----VEITRVR 161 (398)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHH-----HHHHHHH
Confidence 3456777888999999999988877555456665555 555599999999999999999999888611 1223478
Q ss_pred HHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHH
Q 002375 597 LNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHER 676 (929)
Q Consensus 597 ~~~~~~~~~~A~~~l~l~~~~~~~d~~~al~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~ 676 (929)
++...|+++.|...+ ++..+.+|+++.++..++.+|...|++++|+..+.+..+..+.++..
T Consensus 162 l~l~~g~~~~Al~~l------------------~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~ 223 (398)
T PRK10747 162 IQLARNENHAARHGV------------------DKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEH 223 (398)
T ss_pred HHHHCCCHHHHHHHH------------------HHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHH
Confidence 889999999996555 99999999999999999999999999999999999998877664443
Q ss_pred HH-HHHHHHH---HcCCHHHHHHHHHHHHhhccchHHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHH
Q 002375 677 LV-YEGWILY---DTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALN 752 (929)
Q Consensus 677 ~~-~lg~~~~---~~g~~~eA~~~~~~al~l~p~~~a~~~l~~~l~~~~~~~~~~~~a~~~~~~Al~~~~~~l~~~~a~~ 752 (929)
.. ..+..+. ......+....+.+..+.-|.. ..+.+.+..
T Consensus 224 ~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~------------------------------------~~~~~~~~~ 267 (398)
T PRK10747 224 RAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK------------------------------------TRHQVALQV 267 (398)
T ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH------------------------------------HhCCHHHHH
Confidence 22 1112111 1111111122222222222211 011256788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHh----hcCCHH
Q 002375 753 NLGSIYVECGKLDQAENCYINALDIK-HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS----EYSDRE 827 (929)
Q Consensus 753 ~lg~~~~~~g~~~eA~~~~~~al~~~-~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg----~~~~~~ 827 (929)
.++..+...|+.++|...++++++.. ++......+. ...++.+++++..++.++.+|+++..+..+| ..++++
T Consensus 268 ~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~~--l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~ 345 (398)
T PRK10747 268 AMAEHLIECDDHDTAQQIILDGLKRQYDERLVLLIPR--LKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQ 345 (398)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHH
Confidence 89999999999999999999999963 3333333333 3559999999999999999999999988888 679999
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 002375 828 MAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFK 874 (929)
Q Consensus 828 ~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~ 874 (929)
+|...|+++++..|+. ..+..++.++.+.|+.++|..+|++++.+.
T Consensus 346 ~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 346 EASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 9999999999999965 456789999999999999999999998764
No 74
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=99.66 E-value=1.8e-16 Score=145.15 Aligned_cols=100 Identities=30% Similarity=0.382 Sum_probs=90.1
Q ss_pred CCCCCEEEEEc-CeEEEehhHHHhccCHHHHHHhcCC-CCcCCCCeeEecCCCCCHHHHHHHhhhhccCCCCCCC-HhHH
Q 002375 215 EEDDSVTFCVR-DKEISFVRNKIASLSSPFKAMLYGG-FVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFC-PGIV 291 (929)
Q Consensus 215 ~~~~~v~~~v~-~~~~~~hr~iLaa~S~~F~~m~~~~-~~e~~~~~i~~~~~~~~~~~~~~~l~~~yt~~~~~~~-~~~~ 291 (929)
+...||+|.|+ +++|+|||.||+++|+||+.||.++ +.+.....|.+ +++++++|+.+++|+|||++. ++ .+++
T Consensus 8 ~~~~D~~i~v~d~~~~~vhk~iL~~~S~~F~~~~~~~~~~~~~~~~i~~--~~~~~~~~~~~l~~~Y~~~~~-~~~~~~~ 84 (111)
T PF00651_consen 8 NEFSDVTIRVGDGKTFYVHKNILAARSPYFRNLFEGSKFKESTVPEISL--PDVSPEAFEAFLEYMYTGEIE-INSDENV 84 (111)
T ss_dssp TTS--EEEEETTTEEEEE-HHHHHHHBHHHHHHHTTTTSTTSSEEEEEE--TTSCHHHHHHHHHHHHHSEEE-EE-TTTH
T ss_pred CCCCCEEEEECCCEEEeechhhhhccchhhhhccccccccccccccccc--ccccccccccccccccCCccc-CCHHHHH
Confidence 34445999999 8999999999999999999999998 77877778999 999999999999999999998 77 9999
Q ss_pred HHHHHHhchhChHhHHHHHHHHHHhh
Q 002375 292 LELLSFANRFCCEEMKSACDAHLASL 317 (929)
Q Consensus 292 ~~ll~~A~~~~~~~l~~~C~~~l~~~ 317 (929)
.+++.+|++|+++.|+..|+++|.+.
T Consensus 85 ~~ll~lA~~~~~~~L~~~~~~~l~~~ 110 (111)
T PF00651_consen 85 EELLELADKLQIPELKKACEKFLQES 110 (111)
T ss_dssp HHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHhC
Confidence 99999999999999999999999764
No 75
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.65 E-value=1.1e-11 Score=131.22 Aligned_cols=445 Identities=12% Similarity=0.008 Sum_probs=287.8
Q ss_pred HHHHHhhHHHHhcccHHHHHHHHHHHHhcCccccHHHHHHHHHHhchHHHHHHHHHhhhcCCCcchhhhHHHHHhhhhhH
Q 002375 420 LALHQLGCVMFEREEYKDACYYFEAAADAGHIYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNLGRE 499 (929)
Q Consensus 420 ~~~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~~~a~la~~~~~~g~a~~a~~~~~~l~~~~~~~~~~~~~~~l~~~~~~ 499 (929)
..+...|.--..++++..|...|++|+..+..+.. .+.++.....-.+ .-..
T Consensus 74 ~~WikYaqwEesq~e~~RARSv~ERALdvd~r~it-----LWlkYae~Emknk-----------------------~vNh 125 (677)
T KOG1915|consen 74 QVWIKYAQWEESQKEIQRARSVFERALDVDYRNIT-----LWLKYAEFEMKNK-----------------------QVNH 125 (677)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccch-----HHHHHHHHHHhhh-----------------------hHhH
Confidence 34556667778889999999999999998877665 3333322211111 1124
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccCCHhHHHHHHHHHHHhccHHHHHHHHHHHHhhcC
Q 002375 500 KIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLALES 579 (929)
Q Consensus 500 Ai~~~~~al~l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~al~~~p 579 (929)
|...+++|+.+-|.-...|+..-..--..|+...|.+.|++-++..|+..++......-+..+..+.|..+|++.+-.+|
T Consensus 126 ARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP 205 (677)
T KOG1915|consen 126 ARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHP 205 (677)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecc
Confidence 66667777777777777777766666677777777777777777777666666666666666777777777777777776
Q ss_pred CchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCC---ChHHHHHHHHHHHHhcCH
Q 002375 580 NYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPG---KSFLRFRQSLLLLRLNCQ 656 (929)
Q Consensus 580 ~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~d~~~al~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~ 656 (929)
+-..|.. .+.....-|+...+ -.+|.++++.-.+ ...+....|..-.++..+
T Consensus 206 ~v~~wik-------yarFE~k~g~~~~a------------------R~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ 260 (677)
T KOG1915|consen 206 KVSNWIK-------YARFEEKHGNVALA------------------RSVYERAIEFLGDDEEAEILFVAFAEFEERQKEY 260 (677)
T ss_pred cHHHHHH-------HHHHHHhcCcHHHH------------------HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 6554422 12222222222222 2233444433222 223344445555566667
Q ss_pred HHHHHHHHHHHhcCCch--HHHHHHHHHHHHHcCCH---HHHH-----HHHHHHHhhccch-HHHHHHHHHHHhcCCCCC
Q 002375 657 KAAMRCLRLARNHSSSE--HERLVYEGWILYDTGHR---EEAL-----SRAEKSISIERTF-EAFFLKAYILADTNLDPE 725 (929)
Q Consensus 657 ~~A~~~l~~al~~~p~~--~~~~~~lg~~~~~~g~~---~eA~-----~~~~~al~l~p~~-~a~~~l~~~l~~~~~~~~ 725 (929)
+.|.-.|+-|+..-|.+ -+.+-.+...--+-|+. ++++ --|++.++.+|-+ ++|+.........|
T Consensus 261 ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g---- 336 (677)
T KOG1915|consen 261 ERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVG---- 336 (677)
T ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcC----
Confidence 77777777777766665 22222222222333442 2222 2356666666766 66666555544443
Q ss_pred ChHHHHHHHHHHhhchhccCch------hHHHHHHHH-HHHHcCCHHHHHHHHHHHHcCC------ChHHHHHHHHHHHH
Q 002375 726 SSTYVIQLLEEALRCPSDGLRK------GQALNNLGS-IYVECGKLDQAENCYINALDIK------HTRAHQGLARVYYL 792 (929)
Q Consensus 726 ~~~~a~~~~~~Al~~~~~~l~~------~~a~~~lg~-~~~~~g~~~eA~~~~~~al~~~------~~~a~~~la~~~~~ 792 (929)
........|++|+....-+.++ .-.|.+.+. .-+...+.+.+.+.|+.++++- -...|...|.....
T Consensus 337 ~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIR 416 (677)
T KOG1915|consen 337 DKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIR 416 (677)
T ss_pred CHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHH
Confidence 3344444455555432222111 122333322 2245788999999999999982 23578888888889
Q ss_pred hCCHHHHHHHHHHHHHHccCCHH--HHHHHh-hcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHH
Q 002375 793 KNELKAAYDEMTKLLEKAQYSAS--AFEKRS-EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSK 869 (929)
Q Consensus 793 ~g~~~~A~~~~~~al~~~p~~~~--~~~~lg-~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~k 869 (929)
+.+...|.+.+-.++...|.+-. .|..+- .+++++.....|++-++.+|.+..+|...|.+-..+|+.+.|...|+-
T Consensus 417 q~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifel 496 (677)
T KOG1915|consen 417 QLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFEL 496 (677)
T ss_pred HcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 99999999999999999998654 344444 678999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCc-hHHHHH--HHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHh
Q 002375 870 AIAFKPDL-QMLHLR--AAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNRARD 922 (929)
Q Consensus 870 al~~~p~~-~~~~~l--a~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~l~~ 922 (929)
|+....-+ |.+... -.+-...|.+++|...|++.|...+... +|...++.+.
T Consensus 497 Ai~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k-vWisFA~fe~ 551 (677)
T KOG1915|consen 497 AISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK-VWISFAKFEA 551 (677)
T ss_pred HhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch-HHHhHHHHhc
Confidence 98764422 444433 5556678999999999999999987665 7766665543
No 76
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.65 E-value=1.7e-14 Score=156.98 Aligned_cols=254 Identities=15% Similarity=0.147 Sum_probs=199.7
Q ss_pred hhHHHHHhhhhh--HHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccC-CHhHHHHHHHHHHHhcc
Q 002375 487 MYQERSLYNLGR--EKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADD 563 (929)
Q Consensus 487 ~~~~~~l~~~~~--~Ai~~~~~al~l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~~g~ 563 (929)
+..|..++..|. +|+-+|+.|+..+|.++++|..+|.+..+.++-..|+..+.++++++| +.+++..+|..|...|.
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~ 368 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGL 368 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh
Confidence 345666666777 999999999999999999999999999999999999999999999999 88899999999999999
Q ss_pred HHHHHHHHHHHHhhcCCchhhhccc-cHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCC--CCh
Q 002375 564 YESALRDTLALLALESNYMMFHGRV-SGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDP--GKS 640 (929)
Q Consensus 564 ~~eA~~~~~~al~~~p~~~~~~~~~-~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~d~~~al~~~~~al~~~p--~~~ 640 (929)
-.+|+..+.+-+...|......... .... ...+.+.....+. .-...|-.+....| .++
T Consensus 369 q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~------~~~~s~~~~~~l~------------~i~~~fLeaa~~~~~~~Dp 430 (579)
T KOG1125|consen 369 QNQALKMLDKWIRNKPKYVHLVSAGENEDF------ENTKSFLDSSHLA------------HIQELFLEAARQLPTKIDP 430 (579)
T ss_pred HHHHHHHHHHHHHhCccchhccccCccccc------cCCcCCCCHHHHH------------HHHHHHHHHHHhCCCCCCh
Confidence 9999999999999887766211100 0000 0000000000000 00233456666677 789
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Q 002375 641 FLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADT 720 (929)
Q Consensus 641 ~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~l~p~~~a~~~l~~~l~~~ 720 (929)
++...+|.+|...|+|++|+.+|+.|+...|++...|..||-.+....+.++|+..|++|+++.|++
T Consensus 431 dvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~y------------- 497 (579)
T KOG1125|consen 431 DVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGY------------- 497 (579)
T ss_pred hHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCe-------------
Confidence 9999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCC------------hHHHHHHHH
Q 002375 721 NLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIKH------------TRAHQGLAR 788 (929)
Q Consensus 721 ~~~~~~~~~a~~~~~~Al~~~~~~l~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~------------~~a~~~la~ 788 (929)
..+.+++|..++.+|.|++|+++|-.|+.+.. ..+|..|=.
T Consensus 498 ---------------------------VR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~ 550 (579)
T KOG1125|consen 498 ---------------------------VRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRL 550 (579)
T ss_pred ---------------------------eeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHH
Confidence 34577888888888899999999999887711 135555555
Q ss_pred HHHHhCCHHH
Q 002375 789 VYYLKNELKA 798 (929)
Q Consensus 789 ~~~~~g~~~~ 798 (929)
++...++.+-
T Consensus 551 als~~~~~D~ 560 (579)
T KOG1125|consen 551 ALSAMNRSDL 560 (579)
T ss_pred HHHHcCCchH
Confidence 5555555553
No 77
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=1.3e-13 Score=143.94 Aligned_cols=375 Identities=13% Similarity=0.066 Sum_probs=261.9
Q ss_pred chHHHHHHHHHHHhhHHHHhcccHHHHHHHHHHHHhcCccccHHHHHHHHHHhchHHHHHHHHHhhhcCCCcchhhhHHH
Q 002375 412 STERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGHIYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQER 491 (929)
Q Consensus 412 ~~~~~~~a~~~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~~~a~la~~~~~~g~a~~a~~~~~~l~~~~~~~~~~~~~~ 491 (929)
..+..+.+.-....|+.+++..+|.+|++.|..|++..|++.. .|.++......+.
T Consensus 42 ~~~~~~~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~-----yy~nRAa~~m~~~------------------- 97 (486)
T KOG0550|consen 42 SQEAAQQAEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNAS-----YYSNRAATLMMLG------------------- 97 (486)
T ss_pred cchHHHHHHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccchh-----hhchhHHHHHHHH-------------------
Confidence 3444566777888999999999999999999999999888754 3333333333222
Q ss_pred HHhhhhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccCCHhHHHHHHHHHHHhccHHHHHHHH
Q 002375 492 SLYNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDT 571 (929)
Q Consensus 492 ~l~~~~~~Ai~~~~~al~l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~g~~~eA~~~~ 571 (929)
..++|....++.++++|.....+...+.++...++..+|...++.. ..+ .-..|+..+
T Consensus 98 ----~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~~~~~~~-------~~~-----------~~anal~~~ 155 (486)
T KOG0550|consen 98 ----RFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEAEEKLKSK-------QAY-----------KAANALPTL 155 (486)
T ss_pred ----hHhhcccchhhheecCCCccccccchhhhhhhhHHHHHHHHHhhhh-------hhh-----------HHhhhhhhh
Confidence 4446667777788888888888888888888877777777666621 000 122333344
Q ss_pred HHHHhhcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHHH
Q 002375 572 LALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLL 651 (929)
Q Consensus 572 ~~al~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~d~~~al~~~~~al~~~p~~~~~~~~lg~~~~ 651 (929)
++.+..+...+ . -..+..+-+.++...++++.|.... ...+++++.+..+++..|.+++
T Consensus 156 ~~~~~s~s~~p-a--c~~a~~lka~cl~~~~~~~~a~~ea------------------~~ilkld~~n~~al~vrg~~~y 214 (486)
T KOG0550|consen 156 EKLAPSHSREP-A--CFKAKLLKAECLAFLGDYDEAQSEA------------------IDILKLDATNAEALYVRGLCLY 214 (486)
T ss_pred hcccccccCCc-h--hhHHHHhhhhhhhhcccchhHHHHH------------------HHHHhcccchhHHHHhcccccc
Confidence 44333322222 1 0144555667777788888884444 7888999999999999999999
Q ss_pred HhcCHHHHHHHHHHHHhcCCchH------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch-HHHHHHHHHHH
Q 002375 652 RLNCQKAAMRCLRLARNHSSSEH------------ERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILA 718 (929)
Q Consensus 652 ~~g~~~~A~~~l~~al~~~p~~~------------~~~~~lg~~~~~~g~~~eA~~~~~~al~l~p~~-~a~~~l~~~l~ 718 (929)
..++.+.|+..|++++.++|+.. ..+..-|.-.++.|++.+|.+.|..+|.++|++ ..
T Consensus 215 y~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~--------- 285 (486)
T KOG0550|consen 215 YNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKT--------- 285 (486)
T ss_pred cccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccch---------
Confidence 99999999999999999999863 345667999999999999999999999999988 11
Q ss_pred hcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCh--HHHHHHHHHHHHhCCH
Q 002375 719 DTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIKHT--RAHQGLARVYYLKNEL 796 (929)
Q Consensus 719 ~~~~~~~~~~~a~~~~~~Al~~~~~~l~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~~--~a~~~la~~~~~~g~~ 796 (929)
....|.+++.+....|+..+|+...+.++++++. .++...|.++..++++
T Consensus 286 ----------------------------naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~ 337 (486)
T KOG0550|consen 286 ----------------------------NAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKW 337 (486)
T ss_pred ----------------------------hHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHH
Confidence 0345889999999999999999999999999654 6888999999999999
Q ss_pred HHHHHHHHHHHHHccCCHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 002375 797 KAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPD 876 (929)
Q Consensus 797 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~ 876 (929)
++|.+.|+++++...+ ......+ .+|...++++-. .+-|..+|........ +.-..+=..+|...|+
T Consensus 338 e~AV~d~~~a~q~~~s-~e~r~~l------~~A~~aLkkSkR-----kd~ykilGi~~~as~~-eikkayrk~AL~~Hpd 404 (486)
T KOG0550|consen 338 EEAVEDYEKAMQLEKD-CEIRRTL------REAQLALKKSKR-----KDWYKILGISRNASDD-EIKKAYRKLALVHHPD 404 (486)
T ss_pred HHHHHHHHHHHhhccc-cchHHHH------HHHHHHHHHhhh-----hhHHHHhhhhhhcccc-hhhhHHHHHHHHhCCC
Confidence 9999999999987655 3322222 233333333322 2334455544333222 1112222345666665
Q ss_pred ch-------HH-H-HHHHHHHHcCCHHHHHHHHHHH
Q 002375 877 LQ-------ML-H-LRAAFYESIGDLTSAIRDSQAA 903 (929)
Q Consensus 877 ~~-------~~-~-~la~~~~~~g~~~~A~~~~~~a 903 (929)
-. .. + ..|..|...+++.++.+.+.-.
T Consensus 405 ~~agsq~eaE~kFkevgeAy~il~d~~kr~r~dsg~ 440 (486)
T KOG0550|consen 405 KNAGSQKEAEAKFKEVGEAYTILSDPMKRVRFDSGQ 440 (486)
T ss_pred cCcchhHHHHHHHHHHHHHHHHhcCHHHHhhccccc
Confidence 42 11 1 4588899999999888876544
No 78
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.63 E-value=6.3e-13 Score=146.20 Aligned_cols=369 Identities=16% Similarity=0.087 Sum_probs=266.3
Q ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHhcccC-CHhHHHHHHHHHHHhccHHHHHHHHHHHHhhcCCchhhhccccHHHH
Q 002375 515 SFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHL 593 (929)
Q Consensus 515 ~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~a~~l 593 (929)
..+++.++.-.++.++|...++..+.++...| +++.+...|..+..+|+-++|....+.++..++... -.++.
T Consensus 7 E~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~------vCwHv 80 (700)
T KOG1156|consen 7 ENALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSH------VCWHV 80 (700)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccc------hhHHH
Confidence 45678888888899999999999999998777 888999999999999999999999999999888888 78899
Q ss_pred HHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCch
Q 002375 594 VKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE 673 (929)
Q Consensus 594 l~~~~~~~~~~~~A~~~l~l~~~~~~~d~~~al~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~ 673 (929)
+|+++.....|++| +.+|..|+..+|+|..+|..++.+...+++++.....-.+.++..|..
T Consensus 81 ~gl~~R~dK~Y~ea------------------iKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ 142 (700)
T KOG1156|consen 81 LGLLQRSDKKYDEA------------------IKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQ 142 (700)
T ss_pred HHHHHhhhhhHHHH------------------HHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhh
Confidence 99999999999999 555599999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc---cch-HHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccC----
Q 002375 674 HERLVYEGWILYDTGHREEALSRAEKSISIE---RTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGL---- 745 (929)
Q Consensus 674 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~l~---p~~-~a~~~l~~~l~~~~~~~~~~~~a~~~~~~Al~~~~~~l---- 745 (929)
...|...+..+.-.|++..|....+...+.. |+. ..-......+...-. ...+.+++|++...+.-
T Consensus 143 ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~------~E~g~~q~ale~L~~~e~~i~ 216 (700)
T KOG1156|consen 143 RASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQIL------IEAGSLQKALEHLLDNEKQIV 216 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHH------HHcccHHHHHHHHHhhhhHHH
Confidence 9999999999999999999999888877655 433 222222222222110 00112344444333321
Q ss_pred chhHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCChH--HHHHHHHHHHHhCCHHHHH-HHHHHHHHHccCCHH-------
Q 002375 746 RKGQALNNLGSIYVECGKLDQAENCYINALDIKHTR--AHQGLARVYYLKNELKAAY-DEMTKLLEKAQYSAS------- 815 (929)
Q Consensus 746 ~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~~~--a~~~la~~~~~~g~~~~A~-~~~~~al~~~p~~~~------- 815 (929)
..-......|.++...+++++|...|...+..+|.. .+..+-.++..-.+--++. ..|...-+..|...-
T Consensus 217 Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlpls 296 (700)
T KOG1156|consen 217 DKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLS 296 (700)
T ss_pred HHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHH
Confidence 122445567888899999999999999888885543 4444444543222223333 444444433332210
Q ss_pred ------------HHHH----Hh----------hcCCHHHHHHHHHHH-------HhcC------------CCC--cHHHH
Q 002375 816 ------------AFEK----RS----------EYSDREMAKNDLNMA-------TQLD------------PLR--TYPYR 848 (929)
Q Consensus 816 ------------~~~~----lg----------~~~~~~~A~~~~~~a-------l~l~------------p~~--~~~~~ 848 (929)
-|.. .| .+.+.. -...+++. +.-. |-. ...++
T Consensus 297 vl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~-k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y 375 (700)
T KOG1156|consen 297 VLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPE-KVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLY 375 (700)
T ss_pred HhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchh-HhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHH
Confidence 0111 01 112211 11122222 2111 112 23445
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHH-HHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHH
Q 002375 849 YRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLH-LRAAFYESIGDLTSAIRDSQAALCLDPNHMETL 914 (929)
Q Consensus 849 ~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~-~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~ 914 (929)
.++.-+-..|+++.|..++..|+...|+....+ ..|.++.+.|+.++|...++.+.++|-.|...-
T Consensus 376 ~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~IN 442 (700)
T KOG1156|consen 376 FLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAIN 442 (700)
T ss_pred HHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHH
Confidence 788888999999999999999999999998888 559999999999999999999999997766544
No 79
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.63 E-value=8.1e-14 Score=145.37 Aligned_cols=186 Identities=16% Similarity=0.112 Sum_probs=156.8
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHH
Q 002375 673 EHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALN 752 (929)
Q Consensus 673 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~l~p~~~a~~~l~~~l~~~~~~~~~~~~a~~~~~~Al~~~~~~l~~~~a~~ 752 (929)
.+..+..+|.++...|++++|+..++++++.+|++ ..++.
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~----------------------------------------~~~~~ 69 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDD----------------------------------------YLAYL 69 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc----------------------------------------HHHHH
Confidence 36788889999999999999999999999888766 34577
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHcC--CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHhhcCCHHHHH
Q 002375 753 NLGSIYVECGKLDQAENCYINALDI--KHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAK 830 (929)
Q Consensus 753 ~lg~~~~~~g~~~eA~~~~~~al~~--~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~A~ 830 (929)
.+|.++...|++++|++.|+++++. .+..++..+|.++...|++++|...+.+++...+
T Consensus 70 ~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~------------------- 130 (234)
T TIGR02521 70 ALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPL------------------- 130 (234)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccc-------------------
Confidence 7888889999999999999999887 4557888889999999998888888888775321
Q ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHH-HHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 002375 831 NDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLH-LRAAFYESIGDLTSAIRDSQAALCLDPN 909 (929)
Q Consensus 831 ~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~-~la~~~~~~g~~~~A~~~~~~al~l~P~ 909 (929)
.+.....+..+|.++...|++++|...+.++++..|++...+ .+|.++...|++++|...+++++...|.
T Consensus 131 ---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 201 (234)
T TIGR02521 131 ---------YPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQ 201 (234)
T ss_pred ---------cccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 133456678899999999999999999999999999886544 7799999999999999999999999999
Q ss_pred CHHHHHHHHHHHhhhhh
Q 002375 910 HMETLDLYNRARDQASH 926 (929)
Q Consensus 910 ~~~a~~~~~~l~~~~~~ 926 (929)
++..+....++....++
T Consensus 202 ~~~~~~~~~~~~~~~~~ 218 (234)
T TIGR02521 202 TAESLWLGIRIARALGD 218 (234)
T ss_pred CHHHHHHHHHHHHHHhh
Confidence 99888877777765444
No 80
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.63 E-value=8.2e-12 Score=137.58 Aligned_cols=428 Identities=14% Similarity=0.064 Sum_probs=254.3
Q ss_pred HHHHHHhhHHHHhcccHHHHHHHHHHHHhcCccccHHHHHHHHHHhchHHHHHHHHHhhhcCCCcchhhhHHHHHhhhhh
Q 002375 419 MLALHQLGCVMFEREEYKDACYYFEAAADAGHIYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNLGR 498 (929)
Q Consensus 419 a~~~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~~~a~la~~~~~~g~a~~a~~~~~~l~~~~~~~~~~~~~~~l~~~~~ 498 (929)
...+|....-.++.++|.+.++..+..++..|.... .....|..+.+.|+
T Consensus 7 E~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHge------------------------------slAmkGL~L~~lg~ 56 (700)
T KOG1156|consen 7 ENALFRRALKCYETKQYKKGLKLIKQILKKFPEHGE------------------------------SLAMKGLTLNCLGK 56 (700)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccch------------------------------hHHhccchhhcccc
Confidence 345666777778888899988888888887666544 22233444444554
Q ss_pred --HHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccC-CHhHHHHHHHHHHHhccHHHHHHHHHHHH
Q 002375 499 --EKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLALL 575 (929)
Q Consensus 499 --~Ai~~~~~al~l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~~g~~~eA~~~~~~al 575 (929)
+|......++..|+.+...|.-+|.++...++|++|+++|..|+.+.+ +...+..++.+..++++|+.....-.+.+
T Consensus 57 ~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LL 136 (700)
T KOG1156|consen 57 KEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLL 136 (700)
T ss_pred hHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 788888888999999999999999999999999999999999998887 67778888888899999999999999999
Q ss_pred hhcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCC-----hHHHHHHHHHH
Q 002375 576 ALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGK-----SFLRFRQSLLL 650 (929)
Q Consensus 576 ~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~d~~~al~~~~~al~~~p~~-----~~~~~~lg~~~ 650 (929)
+..|.+. ..+.-.+..+.-.|.+..|...++.+ .+.....|.. ..+......+.
T Consensus 137 ql~~~~r------a~w~~~Avs~~L~g~y~~A~~il~ef---------------~~t~~~~~s~~~~e~se~~Ly~n~i~ 195 (700)
T KOG1156|consen 137 QLRPSQR------ASWIGFAVAQHLLGEYKMALEILEEF---------------EKTQNTSPSKEDYEHSELLLYQNQIL 195 (700)
T ss_pred HhhhhhH------HHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHhhccCCCHHHHHHHHHHHHHHHHH
Confidence 9998887 33444666666777777776555222 2222222222 34455666777
Q ss_pred HHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch-HHHHHHHHHHHhcCCCCCChHH
Q 002375 651 LRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTY 729 (929)
Q Consensus 651 ~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~l~p~~-~a~~~l~~~l~~~~~~~~~~~~ 729 (929)
...|.+++|.+.+..--..--+........|.++++++++++|...|...+..+|++ ..+..+-.++.... .....
T Consensus 196 ~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~---d~~~~ 272 (700)
T KOG1156|consen 196 IEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIK---DMLEA 272 (700)
T ss_pred HHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHh---hhHHH
Confidence 778888888877766444333444555667899999999999999999999999999 66666666664111 01111
Q ss_pred HHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHH-HHHHHHcCCChHHHHHHHHHHHHhCCH---HHHHHHHHH
Q 002375 730 VIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAEN-CYINALDIKHTRAHQGLARVYYLKNEL---KAAYDEMTK 805 (929)
Q Consensus 730 a~~~~~~Al~~~~~~l~~~~a~~~lg~~~~~~g~~~eA~~-~~~~al~~~~~~a~~~la~~~~~~g~~---~~A~~~~~~ 805 (929)
....|...-+.|.+.. ....++.....-.++.+.+. ++...++.+-+.+...+-..|..-... ++-+..|..
T Consensus 273 lk~ly~~ls~~y~r~e----~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~ 348 (700)
T KOG1156|consen 273 LKALYAILSEKYPRHE----CPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQH 348 (700)
T ss_pred HHHHHHHHhhcCcccc----cchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHh
Confidence 1122333322222221 11111111111122222221 222222222222222222222111100 000111111
Q ss_pred HHHH------------ccCCHHHH--HHHh----hcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHH
Q 002375 806 LLEK------------AQYSASAF--EKRS----EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEEL 867 (929)
Q Consensus 806 al~~------------~p~~~~~~--~~lg----~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l 867 (929)
.+.- .|..+-+| +.++ ..|+++.|..+.+.|+..-|+.++.+...|.++...|++++|...+
T Consensus 349 ~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l 428 (700)
T KOG1156|consen 349 SLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWL 428 (700)
T ss_pred hcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 1110 01122222 2222 3466666666666666666666666666666666666666666666
Q ss_pred HHHHhcCCCchHHH-HHHHHHHHcCCHHHHHHHHHHHh
Q 002375 868 SKAIAFKPDLQMLH-LRAAFYESIGDLTSAIRDSQAAL 904 (929)
Q Consensus 868 ~kal~~~p~~~~~~-~la~~~~~~g~~~~A~~~~~~al 904 (929)
..+.+++-.+..+. --|....+.++.++|.+.+.+.-
T Consensus 429 ~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFT 466 (700)
T KOG1156|consen 429 DEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFT 466 (700)
T ss_pred HHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhh
Confidence 66666655554444 22555556666666666555443
No 81
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=99.60 E-value=2.8e-15 Score=131.24 Aligned_cols=89 Identities=33% Similarity=0.432 Sum_probs=85.2
Q ss_pred EEEEEcCeEEEehhHHHhccCHHHHHHhcCCCCcCCCCeeEecCCCCCHHHHHHHhhhhccCCCCCCCHhHHHHHHHHhc
Q 002375 220 VTFCVRDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFCPGIVLELLSFAN 299 (929)
Q Consensus 220 v~~~v~~~~~~~hr~iLaa~S~~F~~m~~~~~~e~~~~~i~~~~~~~~~~~~~~~l~~~yt~~~~~~~~~~~~~ll~~A~ 299 (929)
|+|.|+|++|++||.+|+++|+||++||.+++.++....|.+ .++++.+|+.+++|+||+++. ++.+++.+++.+|+
T Consensus 2 v~i~v~~~~~~~h~~iL~~~s~~f~~~~~~~~~~~~~~~i~l--~~~~~~~f~~~l~~ly~~~~~-~~~~~~~~l~~~a~ 78 (90)
T smart00225 2 VTLVVGGKKFKAHKAVLAACSPYFKALFSGDFKESKKSEIYL--DDVSPEDFRALLEFLYTGKLD-LPEENVEELLELAD 78 (90)
T ss_pred eEEEECCEEEehHHHHHhhcCHHHHHHHcCCCccCCCCEEEe--cCCCHHHHHHHHHeecCceee-cCHHHHHHHHHHHH
Confidence 789999999999999999999999999999999888889999 889999999999999999999 88889999999999
Q ss_pred hhChHhHHHHHH
Q 002375 300 RFCCEEMKSACD 311 (929)
Q Consensus 300 ~~~~~~l~~~C~ 311 (929)
+|+++.|++.|+
T Consensus 79 ~~~~~~l~~~c~ 90 (90)
T smart00225 79 YLQIPGLVELCE 90 (90)
T ss_pred HHCcHHHHhhhC
Confidence 999999999994
No 82
>PLN02789 farnesyltranstransferase
Probab=99.60 E-value=1.9e-13 Score=147.37 Aligned_cols=241 Identities=13% Similarity=-0.015 Sum_probs=193.9
Q ss_pred CChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhccchHHHHHHHHH
Q 002375 638 GKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTG-HREEALSRAEKSISIERTFEAFFLKAYI 716 (929)
Q Consensus 638 ~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g-~~~eA~~~~~~al~l~p~~~a~~~l~~~ 716 (929)
+...++-.+-.++...+++++|+..+.++++++|++..+|...|.++..+| ++++++..++++++.+|++
T Consensus 35 ~~~~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npkn--------- 105 (320)
T PLN02789 35 EFREAMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKN--------- 105 (320)
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcc---------
Confidence 334455555556777889999999999999999999999999999999998 6899999999999999988
Q ss_pred HHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCC--HHHHHHHHHHHHcC--CChHHHHHHHHHHHH
Q 002375 717 LADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGK--LDQAENCYINALDI--KHTRAHQGLARVYYL 792 (929)
Q Consensus 717 l~~~~~~~~~~~~a~~~~~~Al~~~~~~l~~~~a~~~lg~~~~~~g~--~~eA~~~~~~al~~--~~~~a~~~la~~~~~ 792 (929)
..+|+..+.++...|+ +++++.+++++++. ++..+|...+.++..
T Consensus 106 -------------------------------yqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~ 154 (320)
T PLN02789 106 -------------------------------YQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRT 154 (320)
T ss_pred -------------------------------hHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 3345555555555554 36788889999988 456799999999999
Q ss_pred hCCHHHHHHHHHHHHHHccCCHHHHHHHh----hc---CCH----HHHHHHHHHHHhcCCCCcHHHHHHHHHHHh----c
Q 002375 793 KNELKAAYDEMTKLLEKAQYSASAFEKRS----EY---SDR----EMAKNDLNMATQLDPLRTYPYRYRAAVLMD----D 857 (929)
Q Consensus 793 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg----~~---~~~----~~A~~~~~~al~l~p~~~~~~~~la~~~~~----~ 857 (929)
.|++++|++.++++++.+|.+..+|..++ .. +.. ++++.+..+++..+|++..+|.+++.++.. .
T Consensus 155 l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l 234 (320)
T PLN02789 155 LGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEAL 234 (320)
T ss_pred hhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCccc
Confidence 99999999999999999999999999988 22 223 578888899999999999999999999988 4
Q ss_pred CCHHHHHHHHHHHHhcCCCchHHH-HHHHHHHHcC------------------CHHHHHHHHHHHhccCCCCHHHHHHHH
Q 002375 858 QKEVEAVEELSKAIAFKPDLQMLH-LRAAFYESIG------------------DLTSAIRDSQAALCLDPNHMETLDLYN 918 (929)
Q Consensus 858 g~~~eA~~~l~kal~~~p~~~~~~-~la~~~~~~g------------------~~~~A~~~~~~al~l~P~~~~a~~~~~ 918 (929)
++..+|++.+.+++..+|++..+. .++.+|.... ..++|.+.|+..-+.||=-..-|..+.
T Consensus 235 ~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~~~d~ir~~yw~~~~ 314 (320)
T PLN02789 235 VSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELEVADPMRRNYWAWRK 314 (320)
T ss_pred ccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHHhhCcHHHHHHHHHH
Confidence 566789999999999888876555 6788887532 346788888888777775555555443
No 83
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.60 E-value=2.6e-13 Score=132.04 Aligned_cols=203 Identities=15% Similarity=0.090 Sum_probs=153.7
Q ss_pred hHHHHHHHHHHHhccHHHHHHHHHHHHhhcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHH
Q 002375 549 DCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAV 628 (929)
Q Consensus 549 ~~~~~~a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~d~~~al~~ 628 (929)
.....+|.-|+..|++..|..-++++|+.+|++. .++..++.+|...|..+.|.+.+
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~------~a~~~~A~~Yq~~Ge~~~A~e~Y----------------- 92 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHDPSYY------LAHLVRAHYYQKLGENDLADESY----------------- 92 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH------HHHHHHHHHHHHcCChhhHHHHH-----------------
Confidence 3456677778888888888888888888888887 77777777777777777775544
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccc
Q 002375 629 INQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNH--SSSEHERLVYEGWILYDTGHREEALSRAEKSISIERT 706 (929)
Q Consensus 629 ~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~--~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~l~p~ 706 (929)
++++.++|++.+++.+.|..+..+|++++|...|++|+.. .+..+..+.++|.|.++.|+++.|..+|+++++++|+
T Consensus 93 -rkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~ 171 (250)
T COG3063 93 -RKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ 171 (250)
T ss_pred -HHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC
Confidence 7778888888888888888888888888888888888764 3556778888888888888888888888888888887
Q ss_pred hHHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcCC--ChHHHH
Q 002375 707 FEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQ 784 (929)
Q Consensus 707 ~~a~~~l~~~l~~~~~~~~~~~~a~~~~~~Al~~~~~~l~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~--~~~a~~ 784 (929)
+ +.....++...+..|+|..|...+++..... ..+.+.
T Consensus 172 ~----------------------------------------~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~ 211 (250)
T COG3063 172 F----------------------------------------PPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLL 211 (250)
T ss_pred C----------------------------------------ChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHH
Confidence 7 3445666777777888888888887776662 334555
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHccCCHH
Q 002375 785 GLARVYYLKNELKAAYDEMTKLLEKAQYSAS 815 (929)
Q Consensus 785 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 815 (929)
...++-...|+.+.|.++=.++....|....
T Consensus 212 L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e 242 (250)
T COG3063 212 LGIRIAKRLGDRAAAQRYQAQLQRLFPYSEE 242 (250)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCCcHH
Confidence 5556667778887777777777777776654
No 84
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.60 E-value=4.5e-12 Score=128.64 Aligned_cols=259 Identities=14% Similarity=0.046 Sum_probs=214.5
Q ss_pred hhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccCC-----HhHHHHHHHHHHHhccHHHHHHH
Q 002375 496 LGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-----VDCLELRAWLFIAADDYESALRD 570 (929)
Q Consensus 496 ~~~~Ai~~~~~al~l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~~-----~~~~~~~a~~~~~~g~~~eA~~~ 570 (929)
..++|+..|...++.+|...++.+.+|..+...|..+.|+..-+..++.... .-+...+|.-|+..|-++.|...
T Consensus 50 Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~ 129 (389)
T COG2956 50 QPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDI 129 (389)
T ss_pred CcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 4459999999999999999999999999999999999999998888744331 22477889999999999999999
Q ss_pred HHHHHhhcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCC-----hHHHHH
Q 002375 571 TLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGK-----SFLRFR 645 (929)
Q Consensus 571 ~~~al~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~d~~~al~~~~~al~~~p~~-----~~~~~~ 645 (929)
|....+...-.. .++.-+-.+|.....|++|+... .+.....+.. +..+..
T Consensus 130 f~~L~de~efa~------~AlqqLl~IYQ~treW~KAId~A------------------~~L~k~~~q~~~~eIAqfyCE 185 (389)
T COG2956 130 FNQLVDEGEFAE------GALQQLLNIYQATREWEKAIDVA------------------ERLVKLGGQTYRVEIAQFYCE 185 (389)
T ss_pred HHHHhcchhhhH------HHHHHHHHHHHHhhHHHHHHHHH------------------HHHHHcCCccchhHHHHHHHH
Confidence 999876543333 67788889999999999995555 7777776654 456778
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHHHHHhcCCCCC
Q 002375 646 QSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPE 725 (929)
Q Consensus 646 lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~l~p~~~a~~~l~~~l~~~~~~~~ 725 (929)
++..+....+.+.|+..+.+|++.+|+...+-..+|.++...|+|+.|++.++.+++.+|++-
T Consensus 186 LAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl----------------- 248 (389)
T COG2956 186 LAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYL----------------- 248 (389)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHH-----------------
Confidence 888888899999999999999999999999999999999999999999999999999999770
Q ss_pred ChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC-CChHHHHHHHHHHHHhCCHHHHHHHHH
Q 002375 726 SSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI-KHTRAHQGLARVYYLKNELKAAYDEMT 804 (929)
Q Consensus 726 ~~~~a~~~~~~Al~~~~~~l~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~-~~~~a~~~la~~~~~~g~~~~A~~~~~ 804 (929)
+.+...|..+|...|+.++.+..+.++.+. ..+++...++..-....-.++|...+.
T Consensus 249 ----------------------~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~ 306 (389)
T COG2956 249 ----------------------SEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLT 306 (389)
T ss_pred ----------------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHH
Confidence 334566778888889999999999999888 455666677777666777788888888
Q ss_pred HHHHHccCCHHHH
Q 002375 805 KLLEKAQYSASAF 817 (929)
Q Consensus 805 ~al~~~p~~~~~~ 817 (929)
+-+...|.--..+
T Consensus 307 ~Ql~r~Pt~~gf~ 319 (389)
T COG2956 307 RQLRRKPTMRGFH 319 (389)
T ss_pred HHHhhCCcHHHHH
Confidence 8888877654443
No 85
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.60 E-value=9.1e-13 Score=147.78 Aligned_cols=314 Identities=14% Similarity=0.013 Sum_probs=219.0
Q ss_pred CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccC-C---HhHHHHHHHHHHHhccHHHHHHHHHHHHhhcCCchhhhc
Q 002375 511 DPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-S---VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHG 586 (929)
Q Consensus 511 ~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~---~~~~~~~a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~ 586 (929)
||+.+.+|..+|..+...|+.+.|...+.++....+ + .+....++..+...|++++|...++++++.+|++.
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~---- 77 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDL---- 77 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH----
Confidence 799999999999999999999999999998886665 2 34567788899999999999999999999999988
Q ss_pred cccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 002375 587 RVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLA 666 (929)
Q Consensus 587 ~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~d~~~al~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~a 666 (929)
.++.. +..+...+.+..+.... ...+......+|.....+..+|.++..+|++++|+..++++
T Consensus 78 --~a~~~-~~~~~~~~~~~~~~~~~--------------~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~a 140 (355)
T cd05804 78 --LALKL-HLGAFGLGDFSGMRDHV--------------ARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRA 140 (355)
T ss_pred --HHHHH-hHHHHHhcccccCchhH--------------HHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33332 33333333332221111 11112233456777778888999999999999999999999
Q ss_pred HhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch-HHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccC
Q 002375 667 RNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGL 745 (929)
Q Consensus 667 l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~l~p~~-~a~~~l~~~l~~~~~~~~~~~~a~~~~~~Al~~~~~~l 745 (929)
++.+|+++..+..+|.++...|++++|+..+++++...|.. ..
T Consensus 141 l~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~------------------------------------ 184 (355)
T cd05804 141 LELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSML------------------------------------ 184 (355)
T ss_pred HhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcch------------------------------------
Confidence 99999999999999999999999999999999999877643 00
Q ss_pred chhHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCC-hHHHH------HHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHH
Q 002375 746 RKGQALNNLGSIYVECGKLDQAENCYINALDIKH-TRAHQ------GLARVYYLKNELKAAYDEMTKLLEKAQYSASAFE 818 (929)
Q Consensus 746 ~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~-~~a~~------~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 818 (929)
....+..+|.++...|++++|+..|++++...+ ..... .+...+...|....+.. ++.+...
T Consensus 185 -~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~-w~~~~~~--------- 253 (355)
T cd05804 185 -RGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDR-WEDLADY--------- 253 (355)
T ss_pred -hHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHH-HHHHHHH---------
Confidence 012366788999999999999999999876533 11111 11111222222111111 1111111
Q ss_pred HHhhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---c------h-HHHHHHHHHH
Q 002375 819 KRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPD---L------Q-MLHLRAAFYE 888 (929)
Q Consensus 819 ~lg~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~---~------~-~~~~la~~~~ 888 (929)
...... .+.........+.++...|+.++|...++......-. . . .....|.++.
T Consensus 254 --------------~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~ 318 (355)
T cd05804 254 --------------AAWHFP-DHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAF 318 (355)
T ss_pred --------------HHhhcC-cccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHH
Confidence 000000 0112223346777888999999999999887654322 1 1 1125599999
Q ss_pred HcCCHHHHHHHHHHHhccC
Q 002375 889 SIGDLTSAIRDSQAALCLD 907 (929)
Q Consensus 889 ~~g~~~~A~~~~~~al~l~ 907 (929)
..|++++|++.+..++.+-
T Consensus 319 ~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 319 AEGNYATALELLGPVRDDL 337 (355)
T ss_pred HcCCHHHHHHHHHHHHHHH
Confidence 9999999999999999764
No 86
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.59 E-value=5.2e-13 Score=149.98 Aligned_cols=258 Identities=18% Similarity=0.161 Sum_probs=201.0
Q ss_pred hcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcc--------cCC-HhHHHHHHHHHHHhccHHHHHHHHHHHHhhcC
Q 002375 509 ELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVF--------KLS-VDCLELRAWLFIAADDYESALRDTLALLALES 579 (929)
Q Consensus 509 ~l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~--------~~~-~~~~~~~a~~~~~~g~~~eA~~~~~~al~~~p 579 (929)
..+|.-..+..++|..|..+|+|+.|+..+++++++ .+. ......+|.+|..++++.+|+..|++++++.-
T Consensus 193 ~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e 272 (508)
T KOG1840|consen 193 DEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIRE 272 (508)
T ss_pred cCCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 346777778888999999999999999999999977 221 12244588999999999999999999987632
Q ss_pred CchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHH
Q 002375 580 NYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAA 659 (929)
Q Consensus 580 ~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~d~~~al~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A 659 (929)
... | ..+|.-+.++.++|.+|...|++++|
T Consensus 273 ~~~-------------------G-------------------------------~~h~~va~~l~nLa~ly~~~GKf~EA 302 (508)
T KOG1840|consen 273 EVF-------------------G-------------------------------EDHPAVAATLNNLAVLYYKQGKFAEA 302 (508)
T ss_pred Hhc-------------------C-------------------------------CCCHHHHHHHHHHHHHHhccCChHHH
Confidence 111 0 11344456788999999999999999
Q ss_pred HHHHHHHHhcC--------CchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHHHHHhcCCCCCChHHHH
Q 002375 660 MRCLRLARNHS--------SSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVI 731 (929)
Q Consensus 660 ~~~l~~al~~~--------p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~l~p~~~a~~~l~~~l~~~~~~~~~~~~a~ 731 (929)
..++++|+++. |.-+..+..++.++...+++++|..++++++++.-+.
T Consensus 303 ~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~------------------------ 358 (508)
T KOG1840|consen 303 EEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA------------------------ 358 (508)
T ss_pred HHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh------------------------
Confidence 99999998753 3345667888999999999999999999998753311
Q ss_pred HHHHHHhhchhcc-CchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcCC-------C---hHHHHHHHHHHHHhCCHHHHH
Q 002375 732 QLLEEALRCPSDG-LRKGQALNNLGSIYVECGKLDQAENCYINALDIK-------H---TRAHQGLARVYYLKNELKAAY 800 (929)
Q Consensus 732 ~~~~~Al~~~~~~-l~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~-------~---~~a~~~la~~~~~~g~~~~A~ 800 (929)
. ... ..-+..+.++|.+|..+|++++|.+.|++|+++. + ...+..+|..|.+.+++.+|.
T Consensus 359 ------~---g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~ 429 (508)
T KOG1840|consen 359 ------P---GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAE 429 (508)
T ss_pred ------c---cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHH
Confidence 0 000 0114568999999999999999999999999881 1 247889999999999999999
Q ss_pred HHHHHHHHHccCCHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 002375 801 DEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIA 872 (929)
Q Consensus 801 ~~~~~al~~~p~~~~~~~~lg~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~ 872 (929)
..|.+++.+. ...-.-.|+....+.+||.+|..+|++++|+++..+++.
T Consensus 430 ~l~~~~~~i~-----------------------~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 430 QLFEEAKDIM-----------------------KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHHHHH-----------------------HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 9998887652 111123456778899999999999999999999999884
No 87
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.58 E-value=1.5e-15 Score=168.61 Aligned_cols=133 Identities=20% Similarity=0.295 Sum_probs=117.4
Q ss_pred cCeEEEehhHHHhccCHHHHHHhcCCCCcCCCCeeEecCCCCCHHHHHHHhhhhc-cCCCCC----CCHhHHHHHHHHhc
Q 002375 225 RDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTR-TSRVDL----FCPGIVLELLSFAN 299 (929)
Q Consensus 225 ~~~~~~~hr~iLaa~S~~F~~m~~~~~~e~~~~~i~~~~~~~~~~~~~~~l~~~y-t~~~~~----~~~~~~~~ll~~A~ 299 (929)
+|++++|||++|++|++||..||..-|.|+..-.+.. ..+..+.|..+|+|+| +++... -..+.+.++|..||
T Consensus 719 DGkvl~aHkc~L~aRlEYF~smf~~~w~E~sS~t~~~--~p~~~e~m~ivLdylYs~d~~~~~k~~~~~dF~~~il~iaD 796 (1267)
T KOG0783|consen 719 DGKVLKAHKCFLSARLEYFSSMFQFVWMESSSITVNL--SPLTVEHMSIVLDYLYSDDKVELFKDLKESDFMFEILSIAD 796 (1267)
T ss_pred CCcCcccceeEeeeHHHHHHHHHHHHHhhhccceeec--CcchHHHHHHHHHHHHccchHHHHhccchhhhhHHHHHHHH
Confidence 8899999999999999999999999999987644444 5566999999999999 555442 34467899999999
Q ss_pred hhChHhHHHHHHHHHHhhcCChhhHHHHHHHHHhhChHHHHHHHHHHHhhhhhhhcCcchh
Q 002375 300 RFCCEEMKSACDAHLASLVGDIEDALILIDYGLEERATLLVASCLQVLLRELPSSLYNPKV 360 (929)
Q Consensus 300 ~~~~~~l~~~C~~~l~~~~~~~~n~~~~~~~a~~~~~~~L~~~c~~~i~~~~~~~~~~~~f 360 (929)
.|.+.+||..|+..|.+.++ ..||-.+++||.+|+|++|...|++||..|+..++.-...
T Consensus 797 qlli~~Lk~Ice~~ll~kl~-lk~~~~llefaamY~ak~L~~~C~dfic~N~~~~Learsi 856 (1267)
T KOG0783|consen 797 QLLILELKSICEQSLLRKLN-LKTLPTLLEFAAMYHAKELYSRCIDFICHNIEFFLEARSI 856 (1267)
T ss_pred HHHHHHHHHHHHHHHHhHhc-ccchHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHHhccH
Confidence 99999999999999999999 9999999999999999999999999999999887765443
No 88
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.58 E-value=8.1e-15 Score=151.37 Aligned_cols=146 Identities=16% Similarity=0.142 Sum_probs=135.3
Q ss_pred ccCCCCCCEEEEEcCeEEEehhHHHhccCHHHHHHhcCCCCcCCCCee--EecCCCCCHHHHHHHhhhhccCCCCCCCHh
Q 002375 212 LSLEEDDSVTFCVRDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTI--DFSHDGVSVEGLRAVEVYTRTSRVDLFCPG 289 (929)
Q Consensus 212 ~~~~~~~~v~~~v~~~~~~~hr~iLaa~S~~F~~m~~~~~~e~~~~~i--~~~~~~~~~~~~~~~l~~~yt~~~~~~~~~ 289 (929)
.+..+.+||.+..=|++++.||.-| ..|+||++||.|.|+|++++.| +|.++.|+..+|..++--+|.+++. |..+
T Consensus 64 f~q~enSDv~l~alg~eWrlHk~yL-~QS~yf~smf~Gtw~es~~~iIqleI~Dp~Id~~al~~a~gsLY~dEve-I~l~ 141 (488)
T KOG4682|consen 64 FLQGENSDVILEALGFEWRLHKPYL-FQSEYFKSMFSGTWKESSMNIIQLEIPDPNIDVVALQVAFGSLYRDEVE-IKLS 141 (488)
T ss_pred HhcCCCcceehhhccceeeeeeeee-eccHHHHHHhccccChhhCceEEEEcCCCcccHHHHHHHHhhhhhhhee-ccHH
Confidence 3456666699999999999999999 6899999999999999999955 5577899999999999999999999 9999
Q ss_pred HHHHHHHHhchhChHhHHHHHHHHHHhhcCChhhHHHHHHHHHhhChHHHHHHHHHHHhhhhhhhcCcchh
Q 002375 290 IVLELLSFANRFCCEEMKSACDAHLASLVGDIEDALILIDYGLEERATLLVASCLQVLLRELPSSLYNPKV 360 (929)
Q Consensus 290 ~~~~ll~~A~~~~~~~l~~~C~~~l~~~~~~~~n~~~~~~~a~~~~~~~L~~~c~~~i~~~~~~~~~~~~f 360 (929)
.|..+|++|..++++.|.+.|.+.+.+.|+ +.|++.+++.+..|+...+++.|+++++.||..+....-+
T Consensus 142 dv~gvlAaA~~lqldgl~qrC~evMie~ls-pkta~~yYea~ckYgle~vk~kc~ewl~~nl~~i~~~q~l 211 (488)
T KOG4682|consen 142 DVVGVLAAACLLQLDGLIQRCGEVMIETLS-PKTACGYYEAACKYGLESVKKKCLEWLLNNLMTIQNVQLL 211 (488)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHhcC-hhhhhHhhhhhhhhhhHHHHHHHHHHHHHhhHhhhhHHHH
Confidence 999999999999999999999999999999 9999999999999999999999999999999988776633
No 89
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.57 E-value=4e-12 Score=142.87 Aligned_cols=236 Identities=21% Similarity=0.164 Sum_probs=156.5
Q ss_pred CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch
Q 002375 636 DPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNH--------SSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF 707 (929)
Q Consensus 636 ~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~--------~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~l~p~~ 707 (929)
.|....+...++..|..+|+++.|+..++.+++. .|.-......+|.+|..++++.+|+..|++|+.+....
T Consensus 195 ~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~ 274 (508)
T KOG1840|consen 195 DPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEV 274 (508)
T ss_pred CchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence 5667777888999999999999999999999988 56656666779999999999999999999999864321
Q ss_pred --HHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC-------C
Q 002375 708 --EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI-------K 778 (929)
Q Consensus 708 --~a~~~l~~~l~~~~~~~~~~~~a~~~~~~Al~~~~~~l~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~-------~ 778 (929)
+.... -+.++.+||.+|...|++++|..++++|+++ .
T Consensus 275 ~G~~h~~----------------------------------va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~ 320 (508)
T KOG1840|consen 275 FGEDHPA----------------------------------VAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGAS 320 (508)
T ss_pred cCCCCHH----------------------------------HHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccC
Confidence 00000 0233444555555555555555555555444 1
Q ss_pred Ch---HHHHHHHHHHHHhCCHHHHHHHHHHHHHHcc--------CCHHHHHHHh----hcCCHHHHHHHHHHHHhc----
Q 002375 779 HT---RAHQGLARVYYLKNELKAAYDEMTKLLEKAQ--------YSASAFEKRS----EYSDREMAKNDLNMATQL---- 839 (929)
Q Consensus 779 ~~---~a~~~la~~~~~~g~~~~A~~~~~~al~~~p--------~~~~~~~~lg----~~~~~~~A~~~~~~al~l---- 839 (929)
++ ..+.+++.++..++++++|..++.+++++.. .-+..+.++| ..|++++|.+.|++|+.+
T Consensus 321 ~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~ 400 (508)
T KOG1840|consen 321 HPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILREL 400 (508)
T ss_pred hHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhc
Confidence 11 1334444444455555555555544443321 1122333343 335555555555555443
Q ss_pred ----CCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCch----HHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 002375 840 ----DPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAF----KPDLQ----MLHLRAAFYESIGDLTSAIRDSQAALC 905 (929)
Q Consensus 840 ----~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~----~p~~~----~~~~la~~~~~~g~~~~A~~~~~~al~ 905 (929)
++....++..+|..+.+.+++.+|...|..++.+ .|+++ .+.++|.+|..+|++++|+++.++++.
T Consensus 401 ~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 401 LGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred ccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 2344667889999999999999999999998765 34443 233889999999999999999999984
No 90
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.56 E-value=2.7e-12 Score=130.29 Aligned_cols=244 Identities=20% Similarity=0.206 Sum_probs=187.7
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHHHHHhcCCC
Q 002375 644 FRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLD 723 (929)
Q Consensus 644 ~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~l~p~~~a~~~l~~~l~~~~~~ 723 (929)
+..|.-++-.++.++|+..|..+++.+|...+++..+|.++...|..+.|+..-+..+. .|+..
T Consensus 39 Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT--------------- 102 (389)
T COG2956 39 YVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLT--------------- 102 (389)
T ss_pred HHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCc---------------
Confidence 45677777889999999999999999999999999999999999999999998776554 45440
Q ss_pred CCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC--CChHHHHHHHHHHHHhCCHHHHHH
Q 002375 724 PESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI--KHTRAHQGLARVYYLKNELKAAYD 801 (929)
Q Consensus 724 ~~~~~~a~~~~~~Al~~~~~~l~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~--~~~~a~~~la~~~~~~g~~~~A~~ 801 (929)
++ ++..+...||.-|...|-+|.|...|....+. --..+...|..+|....++++|++
T Consensus 103 ----------~~----------qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId 162 (389)
T COG2956 103 ----------FE----------QRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAID 162 (389)
T ss_pred ----------hH----------HHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHH
Confidence 00 11345677788888888888888888877775 234577788888888888888888
Q ss_pred HHHHHHHHccCCHH-----HHHHHh----hcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 002375 802 EMTKLLEKAQYSAS-----AFEKRS----EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIA 872 (929)
Q Consensus 802 ~~~~al~~~p~~~~-----~~~~lg----~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~ 872 (929)
..++..+..++... .|..++ ...+.+.|+..+.+|++.+|+...+-..+|.+++..|+|+.|++.++.+++
T Consensus 163 ~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~e 242 (389)
T COG2956 163 VAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLE 242 (389)
T ss_pred HHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHH
Confidence 88888777666432 455555 236778888888888888888888888888888888888888888888888
Q ss_pred cCCCch--HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHhh
Q 002375 873 FKPDLQ--MLHLRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNRARDQ 923 (929)
Q Consensus 873 ~~p~~~--~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~l~~~ 923 (929)
.+|+.- .+-.+..+|.++|+.++....+.++.+..++......+...+..+
T Consensus 243 Qn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~ 295 (389)
T COG2956 243 QNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQ 295 (389)
T ss_pred hChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHh
Confidence 888763 333668888888888888888888888887766655555555443
No 91
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.55 E-value=2.2e-10 Score=125.18 Aligned_cols=428 Identities=14% Similarity=0.035 Sum_probs=259.3
Q ss_pred hhHHHHhcccHHHHHHHHHHHHhcCccccHH--HHHHHHHHhchHHHHHHHHHhhhcCCCcchhhhHHHHHhhhhhHHHH
Q 002375 425 LGCVMFEREEYKDACYYFEAAADAGHIYSLA--GLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNLGREKIV 502 (929)
Q Consensus 425 lG~~~~~~g~y~~A~~~f~~al~~~~~~~~a--~la~~~~~~g~a~~a~~~~~~l~~~~~~~~~~~~~~~l~~~~~~Ai~ 502 (929)
--+.+...|+|++|.+...+.+...|+...+ .-..+..+.+... +|+
T Consensus 18 ~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~------------------------------~AL- 66 (652)
T KOG2376|consen 18 DLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYE------------------------------DAL- 66 (652)
T ss_pred HHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHH------------------------------HHH-
Confidence 3356778899999999999999997776553 1111222222222 222
Q ss_pred HHHHHHhcCCC---ChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccC-CHhHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Q 002375 503 DLNYASELDPT---LSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLALLALE 578 (929)
Q Consensus 503 ~~~~al~l~P~---~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~~g~~~eA~~~~~~al~~~ 578 (929)
+.++.++. .....+.+|.|.++++..++|+..++-. ++ ++.....+|.+++++|+|++|+..|+.+++.+
T Consensus 67 ---k~ikk~~~~~~~~~~~fEKAYc~Yrlnk~Dealk~~~~~---~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~ 140 (652)
T KOG2376|consen 67 ---KLIKKNGALLVINSFFFEKAYCEYRLNKLDEALKTLKGL---DRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNN 140 (652)
T ss_pred ---HHHHhcchhhhcchhhHHHHHHHHHcccHHHHHHHHhcc---cccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 12222331 1112268899999999999999999933 44 45578899999999999999999999998877
Q ss_pred CCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCC-ChHHHHHHHHHHHHhcCHH
Q 002375 579 SNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPG-KSFLRFRQSLLLLRLNCQK 657 (929)
Q Consensus 579 p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~d~~~al~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~ 657 (929)
.++. +...-........ ...+. ..+.+...|. ..+.+|+.+.++...|+|.
T Consensus 141 ~dd~------d~~~r~nl~a~~a--~l~~~--------------------~~q~v~~v~e~syel~yN~Ac~~i~~gky~ 192 (652)
T KOG2376|consen 141 SDDQ------DEERRANLLAVAA--ALQVQ--------------------LLQSVPEVPEDSYELLYNTACILIENGKYN 192 (652)
T ss_pred CchH------HHHHHHHHHHHHH--hhhHH--------------------HHHhccCCCcchHHHHHHHHHHHHhcccHH
Confidence 6665 2221111111110 00000 1233344444 5678999999999999999
Q ss_pred HHHHHHHHHHhc--------CCc-------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch-HHHHHHHHHHHhcC
Q 002375 658 AAMRCLRLARNH--------SSS-------EHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTN 721 (929)
Q Consensus 658 ~A~~~l~~al~~--------~p~-------~~~~~~~lg~~~~~~g~~~eA~~~~~~al~l~p~~-~a~~~l~~~l~~~~ 721 (929)
+|++.+++++++ +.. -..+...++.++..+|+-++|...|...++.+|-+ .........+....
T Consensus 193 qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~ 272 (652)
T KOG2376|consen 193 QAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVALS 272 (652)
T ss_pred HHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCchHHHHHhcchhhhc
Confidence 999999999433 111 13356788999999999999999999999998877 22222222222222
Q ss_pred CCCCChH-HHHHHHHHHhhch----hccC---chhHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCChHH--HHHHHHHHH
Q 002375 722 LDPESST-YVIQLLEEALRCP----SDGL---RKGQALNNLGSIYVECGKLDQAENCYINALDIKHTRA--HQGLARVYY 791 (929)
Q Consensus 722 ~~~~~~~-~a~~~~~~Al~~~----~~~l---~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~~~a--~~~la~~~~ 791 (929)
.+..-.+ ..+...+.-...+ ...+ +....+.|.+...+..+..+.+.+...+.-...+... -........
T Consensus 273 ~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~ 352 (652)
T KOG2376|consen 273 KDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLPGMSPESLFPILLQEATKV 352 (652)
T ss_pred cccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHH
Confidence 1111111 1111111100000 0011 1235667777777777777766655433322222211 111222223
Q ss_pred HhCCHHHHHHHHHHHHHHccCCH-HHHHHHh----hcCCHHHHHHHHHHHHhcC-------CCCcHHHHHHHHHHHhcCC
Q 002375 792 LKNELKAAYDEMTKLLEKAQYSA-SAFEKRS----EYSDREMAKNDLNMATQLD-------PLRTYPYRYRAAVLMDDQK 859 (929)
Q Consensus 792 ~~g~~~~A~~~~~~al~~~p~~~-~~~~~lg----~~~~~~~A~~~~~~al~l~-------p~~~~~~~~la~~~~~~g~ 859 (929)
+...+..|.+.+....+..|.+. .+...++ ..|+++.|+..+....... ...+.+-..+-..+...++
T Consensus 353 ~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~ 432 (652)
T KOG2376|consen 353 REKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKD 432 (652)
T ss_pred HHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccC
Confidence 33367788888888888888873 3333333 5689999998888333111 1233444445556666666
Q ss_pred HHHHHHHHHHHHhcC----CCch---HH-HHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHH
Q 002375 860 EVEAVEELSKAIAFK----PDLQ---ML-HLRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLY 917 (929)
Q Consensus 860 ~~eA~~~l~kal~~~----p~~~---~~-~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~ 917 (929)
-+-|...+..++..- +... .. ...+.+..+.|+-++|...+++.++.+|++.+++..+
T Consensus 433 ~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~l 498 (652)
T KOG2376|consen 433 NDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQL 498 (652)
T ss_pred CccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHH
Confidence 666666666666431 1122 22 2447777788999999999999999999998876544
No 92
>PLN02789 farnesyltranstransferase
Probab=99.55 E-value=1e-12 Score=141.79 Aligned_cols=209 Identities=11% Similarity=0.053 Sum_probs=151.2
Q ss_pred HHHHHhCCHHHHHHHHHHHhcccC-CHhHHHHHHHHHHHhc-cHHHHHHHHHHHHhhcCCchhhhccccHHHHHHHHHHh
Q 002375 523 VAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAAD-DYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHH 600 (929)
Q Consensus 523 ~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~~g-~~~eA~~~~~~al~~~p~~~~~~~~~~a~~ll~~~~~~ 600 (929)
.++...+++++|+..++++++++| +..++..++.++..+| ++++++..++++++.+|++. .+++..+.+...
T Consensus 45 a~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npkny------qaW~~R~~~l~~ 118 (320)
T PLN02789 45 AVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNY------QIWHHRRWLAEK 118 (320)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcch------HHhHHHHHHHHH
Confidence 344556677777777777777777 6666777777777777 56788888888888888877 555556666555
Q ss_pred hccc--chHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHH
Q 002375 601 VRSW--SPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLV 678 (929)
Q Consensus 601 ~~~~--~~A~~~l~l~~~~~~~d~~~al~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~ 678 (929)
.+.. +++ +..+.++++.+|++..+|..++.++...|++++|++.+.++++.+|.+..+|.
T Consensus 119 l~~~~~~~e------------------l~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~ 180 (320)
T PLN02789 119 LGPDAANKE------------------LEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWN 180 (320)
T ss_pred cCchhhHHH------------------HHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHH
Confidence 5542 233 34448889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHc---CCH----HHHHHHHHHHHhhccch-HHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCchhHH
Q 002375 679 YEGWILYDT---GHR----EEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQA 750 (929)
Q Consensus 679 ~lg~~~~~~---g~~----~eA~~~~~~al~l~p~~-~a~~~l~~~l~~~~~~~~~~~~a~~~~~~Al~~~~~~l~~~~a 750 (929)
..+.++... |.+ ++++.+..+++..+|++ .+|..++.++...+..
T Consensus 181 ~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~--------------------------- 233 (320)
T PLN02789 181 QRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEA--------------------------- 233 (320)
T ss_pred HHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcc---------------------------
Confidence 999988776 333 46888888999999988 5555555544332100
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHcC--CChHHHHHHHHHHHH
Q 002375 751 LNNLGSIYVECGKLDQAENCYINALDI--KHTRAHQGLARVYYL 792 (929)
Q Consensus 751 ~~~lg~~~~~~g~~~eA~~~~~~al~~--~~~~a~~~la~~~~~ 792 (929)
.++..+|+..+.+++.. ....++..++.+|..
T Consensus 234 ----------l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 234 ----------LVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCE 267 (320)
T ss_pred ----------cccchhHHHHHHHhhcccCCcHHHHHHHHHHHHh
Confidence 24455677777776665 455677777777764
No 93
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.50 E-value=4.7e-10 Score=119.08 Aligned_cols=399 Identities=12% Similarity=-0.014 Sum_probs=238.4
Q ss_pred hhhhHHHHHhhhhh--HHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccCCH-hHHHHHHHHHHHh
Q 002375 485 GWMYQERSLYNLGR--EKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSV-DCLELRAWLFIAA 561 (929)
Q Consensus 485 ~~~~~~~~l~~~~~--~Ai~~~~~al~l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~a~~~~~~ 561 (929)
.|+..+.--....+ .|...|++|+..+-.+...|+..+.+-++.++...|...+++++.+-|.. ..++.....--.+
T Consensus 75 ~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~L 154 (677)
T KOG1915|consen 75 VWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEML 154 (677)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHh
Confidence 35444433333333 78888888888888888888888888888888888888888888777633 3355555555667
Q ss_pred ccHHHHHHHHHHHHhhcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChH
Q 002375 562 DDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSF 641 (929)
Q Consensus 562 g~~~eA~~~~~~al~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~d~~~al~~~~~al~~~p~~~~ 641 (929)
|+...|...|++-++..|+...|.. .-........++.| -..|++-+-.+| +..
T Consensus 155 gNi~gaRqiferW~~w~P~eqaW~s-------fI~fElRykeiera------------------R~IYerfV~~HP-~v~ 208 (677)
T KOG1915|consen 155 GNIAGARQIFERWMEWEPDEQAWLS-------FIKFELRYKEIERA------------------RSIYERFVLVHP-KVS 208 (677)
T ss_pred cccHHHHHHHHHHHcCCCcHHHHHH-------HHHHHHHhhHHHHH------------------HHHHHHHheecc-cHH
Confidence 8888888888888888887764411 11222223344444 333466666665 456
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch--HHHHHHHHH
Q 002375 642 LRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEH---ERLVYEGWILYDTGHREEALSRAEKSISIERTF--EAFFLKAYI 716 (929)
Q Consensus 642 ~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~---~~~~~lg~~~~~~g~~~eA~~~~~~al~l~p~~--~a~~~l~~~ 716 (929)
.|...+..-.+.|+..-|...|++|++.-.++. ......|..-..+..++.|...|+-|+..-|.. +..+..-..
T Consensus 209 ~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~ 288 (677)
T KOG1915|consen 209 NWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTA 288 (677)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHH
Confidence 777888888888888888888888887655442 233444555556677888888888888877777 323322222
Q ss_pred HHhcCCCCCChHHHHHHHHHHhhchhccCc----hhHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCh-----------H
Q 002375 717 LADTNLDPESSTYVIQLLEEALRCPSDGLR----KGQALNNLGSIYVECGKLDQAENCYINALDIKHT-----------R 781 (929)
Q Consensus 717 l~~~~~~~~~~~~a~~~~~~Al~~~~~~l~----~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~~-----------~ 781 (929)
...+.-+....+.++-. .. .-.|++.+. .-++|...-.+-...|+.+.-.+.|++|+..-++ .
T Consensus 289 fEKqfGd~~gIEd~Iv~-KR-k~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIY 366 (677)
T KOG1915|consen 289 FEKQFGDKEGIEDAIVG-KR-KFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIY 366 (677)
T ss_pred HHHHhcchhhhHHHHhh-hh-hhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHH
Confidence 22222222222222110 00 000111111 1255666666666667777777777777766332 1
Q ss_pred HHHHHHH-HHHHhCCHHHHHHHHHHHHHHccCC----HHHHHHHh----hcCCHHHHHHHHHHHHhcCCCCcHHHHHHHH
Q 002375 782 AHQGLAR-VYYLKNELKAAYDEMTKLLEKAQYS----ASAFEKRS----EYSDREMAKNDLNMATQLDPLRTYPYRYRAA 852 (929)
Q Consensus 782 a~~~la~-~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~lg----~~~~~~~A~~~~~~al~l~p~~~~~~~~la~ 852 (929)
.|.+.+. .-....+.+.+.+.|+.++++-|.. +.+|...+ ...+...|...+-.|+..-|.+ ..+.....
T Consensus 367 LWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~-KlFk~YIe 445 (677)
T KOG1915|consen 367 LWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKD-KLFKGYIE 445 (677)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCch-hHHHHHHH
Confidence 2222221 1233556667777777777766653 23344333 3456667777777777776633 23333444
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCchHHH-HHHHHHHHcCCHHHHHHHHHHHhccCCCCHH
Q 002375 853 VLMDDQKEVEAVEELSKAIAFKPDLQMLH-LRAAFYESIGDLTSAIRDSQAALCLDPNHME 912 (929)
Q Consensus 853 ~~~~~g~~~eA~~~l~kal~~~p~~~~~~-~la~~~~~~g~~~~A~~~~~~al~l~P~~~~ 912 (929)
+-.+.++++.....|++-++..|.+-..+ ..|.+-..+|+.+.|...|+-|+....-+..
T Consensus 446 lElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmp 506 (677)
T KOG1915|consen 446 LELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMP 506 (677)
T ss_pred HHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccH
Confidence 55566677777777777777777664333 4466666677777777777777665544433
No 94
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.43 E-value=3.5e-10 Score=115.82 Aligned_cols=268 Identities=12% Similarity=-0.065 Sum_probs=173.5
Q ss_pred hhhHHHHHHHHHHhcCCCCh-HHHHHHHHHHHHhCCHHHHHHHHHHHhcccC-CHhHHHHHHHHHHHhccHHHHHHHHHH
Q 002375 496 LGREKIVDLNYASELDPTLS-FPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLA 573 (929)
Q Consensus 496 ~~~~Ai~~~~~al~l~P~~~-~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~~g~~~eA~~~~~~ 573 (929)
++..|+..++-...++.... ..-..+|.+++..|+|++|+..|.-+.+.+. +.+...+++.+++.+|.|.+|...-.+
T Consensus 37 DytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~k 116 (557)
T KOG3785|consen 37 DYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEK 116 (557)
T ss_pred cchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhh
Confidence 34477877777776654433 4566778999999999999999999886443 556688899999999999999876554
Q ss_pred HHhhcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHHHHh
Q 002375 574 LLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRL 653 (929)
Q Consensus 574 al~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~d~~~al~~~~~al~~~p~~~~~~~~lg~~~~~~ 653 (929)
.|+.+ ....++-.+....++-.+ |+ .+++.+. +..+-...++.+.+..
T Consensus 117 ----a~k~p------L~~RLlfhlahklndEk~---~~----------------~fh~~Lq---D~~EdqLSLAsvhYmR 164 (557)
T KOG3785|consen 117 ----APKTP------LCIRLLFHLAHKLNDEKR---IL----------------TFHSSLQ---DTLEDQLSLASVHYMR 164 (557)
T ss_pred ----CCCCh------HHHHHHHHHHHHhCcHHH---HH----------------HHHHHHh---hhHHHHHhHHHHHHHH
Confidence 46666 333334444444333221 22 1122222 1123345667777777
Q ss_pred cCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch-HHHHHHHHHHHhcCCCCCChHHHHH
Q 002375 654 NCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQ 732 (929)
Q Consensus 654 g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~l~p~~-~a~~~l~~~l~~~~~~~~~~~~a~~ 732 (929)
-.|.+|++.|.+.+.-+|+......+++.+|+++.-|+-+.+.+.--++..|+. -+...++..+.+.-.......+...
T Consensus 165 ~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ 244 (557)
T KOG3785|consen 165 MHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKE 244 (557)
T ss_pred HHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHH
Confidence 889999999999999999988888899999999999999999999999988988 6666666555544322111111111
Q ss_pred H-------HHHHhhchhcc----------Cc--h------hHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCChHHHHHHH
Q 002375 733 L-------LEEALRCPSDG----------LR--K------GQALNNLGSIYVECGKLDQAENCYINALDIKHTRAHQGLA 787 (929)
Q Consensus 733 ~-------~~~Al~~~~~~----------l~--~------~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~~~a~~~la 787 (929)
. |..+....+-. ++ | +++..++...|..+++.++|+...+.. +-..|.-+...|
T Consensus 245 ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl-~PttP~EyilKg 323 (557)
T KOG3785|consen 245 LADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDL-DPTTPYEYILKG 323 (557)
T ss_pred HHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhc-CCCChHHHHHHH
Confidence 1 11111111110 11 1 478888888899999999998766432 112334444555
Q ss_pred HHHHHhCCH
Q 002375 788 RVYYLKNEL 796 (929)
Q Consensus 788 ~~~~~~g~~ 796 (929)
.+....|+-
T Consensus 324 vv~aalGQe 332 (557)
T KOG3785|consen 324 VVFAALGQE 332 (557)
T ss_pred HHHHHhhhh
Confidence 555555553
No 95
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.43 E-value=5.7e-10 Score=117.25 Aligned_cols=290 Identities=13% Similarity=0.011 Sum_probs=198.3
Q ss_pred HHhccHHHHHHHHHHHHhhcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCC
Q 002375 559 IAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPG 638 (929)
Q Consensus 559 ~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~d~~~al~~~~~al~~~p~ 638 (929)
+..|+|..|.+...+.-+..+.-. -++..-+......|+.+.+..++ .++-+..++
T Consensus 95 l~eG~~~qAEkl~~rnae~~e~p~------l~~l~aA~AA~qrgd~~~an~yL------------------~eaae~~~~ 150 (400)
T COG3071 95 LFEGDFQQAEKLLRRNAEHGEQPV------LAYLLAAEAAQQRGDEDRANRYL------------------AEAAELAGD 150 (400)
T ss_pred HhcCcHHHHHHHHHHhhhcCcchH------HHHHHHHHHHHhcccHHHHHHHH------------------HHHhccCCC
Confidence 445566666655555443333322 23333344445556666665555 444444222
Q ss_pred -ChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch-HHHHHHHHH
Q 002375 639 -KSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYI 716 (929)
Q Consensus 639 -~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~l~p~~-~a~~~l~~~ 716 (929)
.-.....++.+....|+++.|.....++++..|.+++++.....+|...|++.+......+.-+..--. +-+.
T Consensus 151 ~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~----- 225 (400)
T COG3071 151 DTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAA----- 225 (400)
T ss_pred chHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHH-----
Confidence 234566778888999999999999999999999999999999999999999999988887766533211 0000
Q ss_pred HHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC--CChHHHHHHHHHHHHhC
Q 002375 717 LADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI--KHTRAHQGLARVYYLKN 794 (929)
Q Consensus 717 l~~~~~~~~~~~~a~~~~~~Al~~~~~~l~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~--~~~~a~~~la~~~~~~g 794 (929)
+++ ..++..+-.-....+..+.=..++++.-.. .++.....++.-+...|
T Consensus 226 ----------------~le------------~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~ 277 (400)
T COG3071 226 ----------------RLE------------QQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLG 277 (400)
T ss_pred ----------------HHH------------HHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcC
Confidence 000 011111111111111111112233322222 45666777777788888
Q ss_pred CHHHHHHHHHHHHHHccCCHHHHHHHh--hcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 002375 795 ELKAAYDEMTKLLEKAQYSASAFEKRS--EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIA 872 (929)
Q Consensus 795 ~~~~A~~~~~~al~~~p~~~~~~~~lg--~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~ 872 (929)
+.++|.+....+++..-+.. .....+ ..++...-++..++.++..|+++..+..+|.++++.+.|.+|.++|+.+++
T Consensus 278 ~~~~A~~~i~~~Lk~~~D~~-L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~ 356 (400)
T COG3071 278 DHDEAQEIIEDALKRQWDPR-LCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALK 356 (400)
T ss_pred ChHHHHHHHHHHHHhccChh-HHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 88888888888887654433 222222 567888888889999999999999999999999999999999999999999
Q ss_pred cCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 002375 873 FKPDLQMLHLRAAFYESIGDLTSAIRDSQAALCL 906 (929)
Q Consensus 873 ~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 906 (929)
..|+...+..+|.++.++|+..+|.+.++.++.+
T Consensus 357 ~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 357 LRPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999854
No 96
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.42 E-value=1.4e-09 Score=111.39 Aligned_cols=433 Identities=14% Similarity=0.048 Sum_probs=213.8
Q ss_pred hHHHHHHHHHhhcchHHHHHHHHHHHhhHHHHhcccHHHHHHHHHHHHhcCccccH--HHHHHHHHHhchHHHHHHHHHh
Q 002375 399 NTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGHIYSL--AGLARAKYKVGQQYSAYKLINS 476 (929)
Q Consensus 399 ~~~~~~Le~l~~~~~~~~~~a~~~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~~~--a~la~~~~~~g~a~~a~~~~~~ 476 (929)
.-++.+|+.......... ...-..+|.+++..|+|++|+..|+-+.+.+.-... ..+|-+++-.|...++-..+.
T Consensus 39 tGAislLefk~~~~~EEE--~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~- 115 (557)
T KOG3785|consen 39 TGAISLLEFKLNLDREEE--DSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAE- 115 (557)
T ss_pred hhHHHHHHHhhccchhhh--HHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHh-
Confidence 345666765543322222 233446899999999999999999998886433332 266667766666544433211
Q ss_pred hhcCCCcc-hhhhHHHHHhhhhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccCCHh-HHHHH
Q 002375 477 IISEHKPT-GWMYQERSLYNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVD-CLELR 554 (929)
Q Consensus 477 l~~~~~~~-~~~~~~~~l~~~~~~Ai~~~~~al~l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~ 554 (929)
..++ .|. .....-.+.--..++.+..|.+.+.- ..+-...+|.+.+..-.|.+|++.|.+++.-++.-. .-..+
T Consensus 116 ka~k-~pL~~RLlfhlahklndEk~~~~fh~~LqD---~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ 191 (557)
T KOG3785|consen 116 KAPK-TPLCIRLLFHLAHKLNDEKRILTFHSSLQD---TLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYM 191 (557)
T ss_pred hCCC-ChHHHHHHHHHHHHhCcHHHHHHHHHHHhh---hHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHH
Confidence 1111 111 01111111111111344444443331 123344455555555566666666666664443111 12344
Q ss_pred HHHHHHhccHHHHHHHHHHHHhhcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHh
Q 002375 555 AWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLI 634 (929)
Q Consensus 555 a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~d~~~al~~~~~al~ 634 (929)
+.||+++.-|+-+.+.+.--+...|+.+ -+..+.+....+.=.-..|+.- .+-+.
T Consensus 192 ALCyyKlDYydvsqevl~vYL~q~pdSt------iA~NLkacn~fRl~ngr~ae~E-------------------~k~la 246 (557)
T KOG3785|consen 192 ALCYYKLDYYDVSQEVLKVYLRQFPDST------IAKNLKACNLFRLINGRTAEDE-------------------KKELA 246 (557)
T ss_pred HHHHHhcchhhhHHHHHHHHHHhCCCcH------HHHHHHHHHHhhhhccchhHHH-------------------HHHHH
Confidence 6666666666666666666666666666 2222332222221111111000 01111
Q ss_pred cCCCChHHHHHHHHHHHHh-----cCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch-H
Q 002375 635 NDPGKSFLRFRQSLLLLRL-----NCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-E 708 (929)
Q Consensus 635 ~~p~~~~~~~~lg~~~~~~-----g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~l~p~~-~ 708 (929)
.+-+. -+-.+.-+.+. .+-+.|++.+--.++.- |++..++...|.++++.++|+...+. ++|.. .
T Consensus 247 dN~~~---~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~I---PEARlNL~iYyL~q~dVqeA~~L~Kd---l~PttP~ 317 (557)
T KOG3785|consen 247 DNIDQ---EYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHI---PEARLNLIIYYLNQNDVQEAISLCKD---LDPTTPY 317 (557)
T ss_pred hcccc---cchhHHHHHHcCeEEEeCCccHHHhchHHHhhC---hHhhhhheeeecccccHHHHHHHHhh---cCCCChH
Confidence 11110 01111111111 12234444444443333 56888888899999999999887654 56666 4
Q ss_pred HHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhcc----Cc--hhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC--CCh
Q 002375 709 AFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDG----LR--KGQALNNLGSIYVECGKLDQAENCYINALDI--KHT 780 (929)
Q Consensus 709 a~~~l~~~l~~~~~~~~~~~~a~~~~~~Al~~~~~~----l~--~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~--~~~ 780 (929)
-+...|...+..|...++.+ ...-|...++-. +. .......++..++-..++++.+.++...-.. ++.
T Consensus 318 EyilKgvv~aalGQe~gSre----HlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD 393 (557)
T KOG3785|consen 318 EYILKGVVFAALGQETGSRE----HLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDD 393 (557)
T ss_pred HHHHHHHHHHHhhhhcCcHH----HHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 55666666665553333321 122222222211 00 0122233444444445555555444433333 344
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcH-HHHHHHHHHHhcCC
Q 002375 781 RAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTY-PYRYRAAVLMDDQK 859 (929)
Q Consensus 781 ~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~A~~~~~~al~l~p~~~~-~~~~la~~~~~~g~ 859 (929)
...+++|.++...|++.+|.+.|-+. -..+-.+.. ....+|.+|...++
T Consensus 394 ~Fn~N~AQAk~atgny~eaEelf~~i------------------------------s~~~ikn~~~Y~s~LArCyi~nkk 443 (557)
T KOG3785|consen 394 DFNLNLAQAKLATGNYVEAEELFIRI------------------------------SGPEIKNKILYKSMLARCYIRNKK 443 (557)
T ss_pred hhhhHHHHHHHHhcChHHHHHHHhhh------------------------------cChhhhhhHHHHHHHHHHHHhcCC
Confidence 45555555555555555555554433 222211222 23467888888888
Q ss_pred HHHHHHHHHHHHhcCCCchH--H-HHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 002375 860 EVEAVEELSKAIAFKPDLQM--L-HLRAAFYESIGDLTSAIRDSQAALCLDPN 909 (929)
Q Consensus 860 ~~eA~~~l~kal~~~p~~~~--~-~~la~~~~~~g~~~~A~~~~~~al~l~P~ 909 (929)
.+-|.+.+-+ .+..... + ...|....+.+++--|.+.|...-.+||+
T Consensus 444 P~lAW~~~lk---~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~ 493 (557)
T KOG3785|consen 444 PQLAWDMMLK---TNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPT 493 (557)
T ss_pred chHHHHHHHh---cCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCC
Confidence 8887777643 2222221 2 24477777778877777888777777775
No 97
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.40 E-value=1.6e-11 Score=128.87 Aligned_cols=201 Identities=14% Similarity=0.103 Sum_probs=147.5
Q ss_pred hcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch-HH
Q 002375 634 INDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEH---ERLVYEGWILYDTGHREEALSRAEKSISIERTF-EA 709 (929)
Q Consensus 634 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~---~~~~~lg~~~~~~g~~~eA~~~~~~al~l~p~~-~a 709 (929)
..++..+..++.+|..+...|++++|+..|++++..+|+++ .+++.+|.++...|++++|+..|+++++..|++ ..
T Consensus 27 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 106 (235)
T TIGR03302 27 PVEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDA 106 (235)
T ss_pred CcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCch
Confidence 34566778899999999999999999999999999988765 577899999999999999999999999988876 11
Q ss_pred HHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCChHHHHHHHHH
Q 002375 710 FFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIKHTRAHQGLARV 789 (929)
Q Consensus 710 ~~~l~~~l~~~~~~~~~~~~a~~~~~~Al~~~~~~l~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~~~a~~~la~~ 789 (929)
..+++.+|.++... .+.+
T Consensus 107 --------------------------------------~~a~~~~g~~~~~~------------------------~~~~ 124 (235)
T TIGR03302 107 --------------------------------------DYAYYLRGLSNYNQ------------------------IDRV 124 (235)
T ss_pred --------------------------------------HHHHHHHHHHHHHh------------------------cccc
Confidence 11244455544332 1112
Q ss_pred HHHhCCHHHHHHHHHHHHHHccCCHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHH
Q 002375 790 YYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSK 869 (929)
Q Consensus 790 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~k 869 (929)
+...|++++|++.+++++..+|++...+..+...+.... ........+|.+++..|++.+|+..+++
T Consensus 125 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~-------------~~~~~~~~~a~~~~~~g~~~~A~~~~~~ 191 (235)
T TIGR03302 125 DRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRN-------------RLAGKELYVARFYLKRGAYVAAINRFET 191 (235)
T ss_pred cCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 333466777777777788777777655433321111110 0112345788899999999999999999
Q ss_pred HHhcCCCch----HHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 002375 870 AIAFKPDLQ----MLHLRAAFYESIGDLTSAIRDSQAALCLDPN 909 (929)
Q Consensus 870 al~~~p~~~----~~~~la~~~~~~g~~~~A~~~~~~al~l~P~ 909 (929)
+++..|+.+ .++.+|.++..+|++++|..+++......|+
T Consensus 192 al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~~ 235 (235)
T TIGR03302 192 VVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYPD 235 (235)
T ss_pred HHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 999988753 4557899999999999999998888776664
No 98
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.37 E-value=2.9e-10 Score=127.44 Aligned_cols=285 Identities=10% Similarity=0.018 Sum_probs=196.5
Q ss_pred HHHHHHHHHHhcCCCC---hHHHHHHHHHHHHhCCHHHHHHHHHHHhcccC-CHhHHHHHHHHHHHhccHHHHHHHHHHH
Q 002375 499 EKIVDLNYASELDPTL---SFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLAL 574 (929)
Q Consensus 499 ~Ai~~~~~al~l~P~~---~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~~g~~~eA~~~~~~a 574 (929)
.+...+.++....|.+ ....+.+|..+...|++++|...++++++..| ++..+.. +..+...|++..+.....++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~ 102 (355)
T cd05804 24 AAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARV 102 (355)
T ss_pred hHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHH
Confidence 5566667777666654 45677889999999999999999999998887 4444443 55555555554444444444
Q ss_pred H----hhcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHH
Q 002375 575 L----ALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLL 650 (929)
Q Consensus 575 l----~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~d~~~al~~~~~al~~~p~~~~~~~~lg~~~ 650 (929)
+ ..+|... .....++.++...|++++|...+ +++++.+|+++.++..+|.++
T Consensus 103 l~~~~~~~~~~~------~~~~~~a~~~~~~G~~~~A~~~~------------------~~al~~~p~~~~~~~~la~i~ 158 (355)
T cd05804 103 LPLWAPENPDYW------YLLGMLAFGLEEAGQYDRAEEAA------------------RRALELNPDDAWAVHAVAHVL 158 (355)
T ss_pred HhccCcCCCCcH------HHHHHHHHHHHHcCCHHHHHHHH------------------HHHHhhCCCCcHHHHHHHHHH
Confidence 4 3334433 45667888999999999996666 999999999999999999999
Q ss_pred HHhcCHHHHHHHHHHHHhcCCchH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch--HHHH-HHHHHHHhcCCC
Q 002375 651 LRLNCQKAAMRCLRLARNHSSSEH----ERLVYEGWILYDTGHREEALSRAEKSISIERTF--EAFF-LKAYILADTNLD 723 (929)
Q Consensus 651 ~~~g~~~~A~~~l~~al~~~p~~~----~~~~~lg~~~~~~g~~~eA~~~~~~al~l~p~~--~a~~-~l~~~l~~~~~~ 723 (929)
...|++++|+..+++++...|..+ ..+..+|.++...|++++|+..|++++...|.. .... ..+..+......
T Consensus 159 ~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 238 (355)
T cd05804 159 EMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELA 238 (355)
T ss_pred HHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhc
Confidence 999999999999999999877433 346689999999999999999999998776622 1111 111111111100
Q ss_pred CCChHHHHHHHHHHhhchhccCc-h--hHHHHHHHHHHHHcCCHHHHHHHHHHHHcC--C---------ChHHHHHHHHH
Q 002375 724 PESSTYVIQLLEEALRCPSDGLR-K--GQALNNLGSIYVECGKLDQAENCYINALDI--K---------HTRAHQGLARV 789 (929)
Q Consensus 724 ~~~~~~a~~~~~~Al~~~~~~l~-~--~~a~~~lg~~~~~~g~~~eA~~~~~~al~~--~---------~~~a~~~la~~ 789 (929)
+. ......++.+......... . .......+.++...|+.++|...++..... . ........+.+
T Consensus 239 -g~-~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~ 316 (355)
T cd05804 239 -GH-VDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALY 316 (355)
T ss_pred -CC-CChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHH
Confidence 00 1111233322221111100 1 122235778888899999999888877654 1 12456777888
Q ss_pred HHHhCCHHHHHHHHHHHHHHc
Q 002375 790 YYLKNELKAAYDEMTKLLEKA 810 (929)
Q Consensus 790 ~~~~g~~~~A~~~~~~al~~~ 810 (929)
+...|++++|.+.+..++...
T Consensus 317 ~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 317 AFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHcCCHHHHHHHHHHHHHHH
Confidence 899999999999999988764
No 99
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.37 E-value=4.2e-11 Score=125.77 Aligned_cols=175 Identities=14% Similarity=0.031 Sum_probs=145.9
Q ss_pred cCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccC-CH---hHHHHHHHHHHHhccHHHHHHHHHHHHhhcCCchhhh
Q 002375 510 LDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SV---DCLELRAWLFIAADDYESALRDTLALLALESNYMMFH 585 (929)
Q Consensus 510 l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~---~~~~~~a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~ 585 (929)
.++..+..++.+|..++..|++++|+..|++++...| ++ ..++.+|.++...|++++|+..|+++++..|+++..
T Consensus 28 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~- 106 (235)
T TIGR03302 28 VEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDA- 106 (235)
T ss_pred cccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCch-
Confidence 4566788999999999999999999999999998887 33 467899999999999999999999999999988822
Q ss_pred ccccHHHHHHHHHHhh--------cccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHH--------------
Q 002375 586 GRVSGDHLVKLLNHHV--------RSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLR-------------- 643 (929)
Q Consensus 586 ~~~~a~~ll~~~~~~~--------~~~~~A~~~l~l~~~~~~~d~~~al~~~~~al~~~p~~~~~~-------------- 643 (929)
..++..+|.++... +++++|...+ ++++..+|++..++
T Consensus 107 --~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~------------------~~~~~~~p~~~~~~~a~~~~~~~~~~~~ 166 (235)
T TIGR03302 107 --DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAF------------------QELIRRYPNSEYAPDAKKRMDYLRNRLA 166 (235)
T ss_pred --HHHHHHHHHHHHHhcccccCCHHHHHHHHHHH------------------HHHHHHCCCChhHHHHHHHHHHHHHHHH
Confidence 02567778887654 5666674444 88888888875442
Q ss_pred ---HHHHHHHHHhcCHHHHHHHHHHHHhcCCch---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc
Q 002375 644 ---FRQSLLLLRLNCQKAAMRCLRLARNHSSSE---HERLVYEGWILYDTGHREEALSRAEKSISIER 705 (929)
Q Consensus 644 ---~~lg~~~~~~g~~~~A~~~l~~al~~~p~~---~~~~~~lg~~~~~~g~~~eA~~~~~~al~l~p 705 (929)
..+|..|...|++.+|+..++++++..|+. +.+++.+|.++..+|++++|..+++......|
T Consensus 167 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 167 GKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 467888999999999999999999997654 68999999999999999999999887766544
No 100
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.36 E-value=2.5e-09 Score=117.08 Aligned_cols=353 Identities=17% Similarity=0.113 Sum_probs=218.2
Q ss_pred hhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccCCHhHHHHHHHHHHHhccHHHHHHHHHHHHh
Q 002375 497 GREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLA 576 (929)
Q Consensus 497 ~~~Ai~~~~~al~l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~al~ 576 (929)
+++|+....+.+...|++..+....-.++++.++|++|+...++-..........+..+.|.++++..++|+..++ .
T Consensus 28 ~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~Dealk~~~---~ 104 (652)
T KOG2376|consen 28 YEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDEALKTLK---G 104 (652)
T ss_pred HHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHHHHHHHh---c
Confidence 3489999999999999999999999999999999999996666543222222233789999999999999999998 4
Q ss_pred hcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHHHHhcCH
Q 002375 577 LESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQ 656 (929)
Q Consensus 577 ~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~d~~~al~~~~~al~~~p~~~~~~~~lg~~~~~~g~~ 656 (929)
.++.+. ..+.+.+.+....++|++| +..|+..++.+.++.+............ -
T Consensus 105 ~~~~~~------~ll~L~AQvlYrl~~ydea------------------ldiY~~L~kn~~dd~d~~~r~nl~a~~a--~ 158 (652)
T KOG2376|consen 105 LDRLDD------KLLELRAQVLYRLERYDEA------------------LDIYQHLAKNNSDDQDEERRANLLAVAA--A 158 (652)
T ss_pred ccccch------HHHHHHHHHHHHHhhHHHH------------------HHHHHHHHhcCCchHHHHHHHHHHHHHH--h
Confidence 455555 6788899999999999999 5555787777766655544333322111 0
Q ss_pred HHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHHHHHhcCCCCCChHHHHHHHH
Q 002375 657 KAAMRCLRLARNHSSS-EHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLE 735 (929)
Q Consensus 657 ~~A~~~l~~al~~~p~-~~~~~~~lg~~~~~~g~~~eA~~~~~~al~l~p~~~a~~~l~~~l~~~~~~~~~~~~a~~~~~ 735 (929)
-.+. ..+.....|. ..+.+++.+-++...|+|.+|++.+++++.+.... +..++.. -..++
T Consensus 159 l~~~--~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~--------------l~~~d~~--eEeie 220 (652)
T KOG2376|consen 159 LQVQ--LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREK--------------LEDEDTN--EEEIE 220 (652)
T ss_pred hhHH--HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHh--------------hcccccc--hhhHH
Confidence 1111 3333444444 57788999999999999999999999997764322 0000000 00111
Q ss_pred HHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCChH----------------------------------
Q 002375 736 EALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIKHTR---------------------------------- 781 (929)
Q Consensus 736 ~Al~~~~~~l~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~~~---------------------------------- 781 (929)
.-+ ..+...++.++..+|+.++|...|...++.++++
T Consensus 221 ~el---------~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~ 291 (652)
T KOG2376|consen 221 EEL---------NPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVF 291 (652)
T ss_pred HHH---------HHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHH
Confidence 111 3456677777888888888888777777663221
Q ss_pred -----------------HHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHH-HHHHHh---hcCCHHHHHHHHHHHHhcC
Q 002375 782 -----------------AHQGLARVYYLKNELKAAYDEMTKLLEKAQYSAS-AFEKRS---EYSDREMAKNDLNMATQLD 840 (929)
Q Consensus 782 -----------------a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~lg---~~~~~~~A~~~~~~al~l~ 840 (929)
.+.+.+......+..+.+.+...+.-...|.... +....+ ......+|...+....+.+
T Consensus 292 ~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~ 371 (652)
T KOG2376|consen 292 KLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGH 371 (652)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccC
Confidence 1112222222222222222222221112222111 111111 1124567788888888888
Q ss_pred CCC-cHHHHHHHHHHHhcCCHHHHHHHHH--------HHHhcCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 002375 841 PLR-TYPYRYRAAVLMDDQKEVEAVEELS--------KAIAFKPDLQMLHLRAAFYESIGDLTSAIRDSQAALC 905 (929)
Q Consensus 841 p~~-~~~~~~la~~~~~~g~~~eA~~~l~--------kal~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 905 (929)
|.. ..+...++.+...+|+++.|++.+. ...+..-.....-.+-..|.+.++.+.|...+..|+.
T Consensus 372 p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~ 445 (652)
T KOG2376|consen 372 PEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIK 445 (652)
T ss_pred CchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHH
Confidence 866 6677788888899999999999988 4433333333222344445555555445554444443
No 101
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.35 E-value=1.3e-11 Score=118.13 Aligned_cols=121 Identities=13% Similarity=0.034 Sum_probs=96.4
Q ss_pred HHHHHHHHHccCCHHHHHHHh----hcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 002375 801 DEMTKLLEKAQYSASAFEKRS----EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPD 876 (929)
Q Consensus 801 ~~~~~al~~~p~~~~~~~~lg----~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~ 876 (929)
..++++++.+|++ +..+| ..|++++|+..|++++..+|.+..+|..+|.++...|++++|+..|+++++++|+
T Consensus 14 ~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~ 90 (144)
T PRK15359 14 DILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS 90 (144)
T ss_pred HHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 3455566665554 22223 4566677777777777778888888899999999999999999999999999998
Q ss_pred chHHH-HHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHhhh
Q 002375 877 LQMLH-LRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNRARDQA 924 (929)
Q Consensus 877 ~~~~~-~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~l~~~~ 924 (929)
++..+ .+|.++..+|++++|+..|+++++++|++++.+.+++.++...
T Consensus 91 ~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 91 HPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMV 139 (144)
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 87655 7799999999999999999999999999999998888877554
No 102
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.34 E-value=7.9e-10 Score=126.20 Aligned_cols=268 Identities=19% Similarity=0.115 Sum_probs=207.6
Q ss_pred ChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch-HHHHHHHHHH
Q 002375 639 KSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYIL 717 (929)
Q Consensus 639 ~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~l~p~~-~a~~~l~~~l 717 (929)
+.++......++...|++++|++.++.....-.+...++...|.++.++|++++|...|...+..+|++ ..+..+..++
T Consensus 3 ~SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~ 82 (517)
T PF12569_consen 3 HSELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEAL 82 (517)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence 356777888999999999999999999988889989999999999999999999999999999999999 6666776666
Q ss_pred HhcC-CCCCChHHHHHHHHHHhhchhccCch-----------------------------hHHHHHHHHHHHHcCCHHHH
Q 002375 718 ADTN-LDPESSTYVIQLLEEALRCPSDGLRK-----------------------------GQALNNLGSIYVECGKLDQA 767 (929)
Q Consensus 718 ~~~~-~~~~~~~~a~~~~~~Al~~~~~~l~~-----------------------------~~a~~~lg~~~~~~g~~~eA 767 (929)
.... ...+........|++-...|.++..+ +..+.++-..|....+.+-.
T Consensus 83 g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i 162 (517)
T PF12569_consen 83 GLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAII 162 (517)
T ss_pred hhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHH
Confidence 4332 34445566666677666555443110 23444454455433333222
Q ss_pred HHHHHHH---HcC------------CCh----HHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHh----hcC
Q 002375 768 ENCYINA---LDI------------KHT----RAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS----EYS 824 (929)
Q Consensus 768 ~~~~~~a---l~~------------~~~----~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg----~~~ 824 (929)
...+... ++. .++ .+++.+|..|...|++++|+++.+++|+..|..++.|...| ..|
T Consensus 163 ~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G 242 (517)
T PF12569_consen 163 ESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAG 242 (517)
T ss_pred HHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCC
Confidence 2222222 211 112 25688999999999999999999999999999999999998 679
Q ss_pred CHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCc-----h-HHHHH--HHHHHHcCCHH
Q 002375 825 DREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFK--PDL-----Q-MLHLR--AAFYESIGDLT 894 (929)
Q Consensus 825 ~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~--p~~-----~-~~~~l--a~~~~~~g~~~ 894 (929)
++.+|...++.|-.+|+.+-..-...+..+++.|+.++|.+.+..-...+ |.. . .|+.. |.+|.+.|++.
T Consensus 243 ~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~ 322 (517)
T PF12569_consen 243 DLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYG 322 (517)
T ss_pred CHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 99999999999999999999999999999999999999999988765544 211 1 34433 99999999999
Q ss_pred HHHHHHHHHhcc
Q 002375 895 SAIRDSQAALCL 906 (929)
Q Consensus 895 ~A~~~~~~al~l 906 (929)
.|++.|..+.+.
T Consensus 323 ~ALk~~~~v~k~ 334 (517)
T PF12569_consen 323 LALKRFHAVLKH 334 (517)
T ss_pred HHHHHHHHHHHH
Confidence 999999998876
No 103
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.34 E-value=3.9e-11 Score=124.90 Aligned_cols=281 Identities=18% Similarity=0.137 Sum_probs=177.5
Q ss_pred HHHHHHhCCHHHHHHHHHHHhcccC-----CHhHHHHHHHHHHHhccHHHHHHHHHHHHhhcCCchhhhccccHHHHHHH
Q 002375 522 AVAKMEEGQIRAAISEIDRIIVFKL-----SVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKL 596 (929)
Q Consensus 522 a~~~~~~g~~~~A~~~~~~al~~~~-----~~~~~~~~a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~a~~ll~~ 596 (929)
|.-+++.|++...+..|+.+++... -...|..+|..|+.+++|++|+++-..-+.+.
T Consensus 24 GERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltla------------------ 85 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLA------------------ 85 (639)
T ss_pred HHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHH------------------
Confidence 6667778888888888888875442 11124455555555555555555433222111
Q ss_pred HHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-----
Q 002375 597 LNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSS----- 671 (929)
Q Consensus 597 ~~~~~~~~~~A~~~l~l~~~~~~~d~~~al~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p----- 671 (929)
+.+...-..+..--++|..+.-.|.|++|+.+..+-+....
T Consensus 86 ----------------------------------r~lgdklGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDr 131 (639)
T KOG1130|consen 86 ----------------------------------RLLGDKLGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDR 131 (639)
T ss_pred ----------------------------------HHhcchhccccccccccchhhhhcccchHHHHHHHHhHHHHHHhHH
Confidence 11111112223334566777777777777766655544322
Q ss_pred -chHHHHHHHHHHHHHcCCH-------------HHHHHHHHHHHhhccch-HHHHHHHHHHHhcCCCCCChHHHHHHHHH
Q 002375 672 -SEHERLVYEGWILYDTGHR-------------EEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEE 736 (929)
Q Consensus 672 -~~~~~~~~lg~~~~~~g~~-------------~eA~~~~~~al~l~p~~-~a~~~l~~~l~~~~~~~~~~~~a~~~~~~ 736 (929)
....+++++|.+|...|+. +++...++.|.+....+ +....+
T Consensus 132 v~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~l----------------------- 188 (639)
T KOG1130|consen 132 VLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKL----------------------- 188 (639)
T ss_pred HhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHh-----------------------
Confidence 1256778888888777652 23333333333321111 000000
Q ss_pred HhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC----C----ChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 002375 737 ALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI----K----HTRAHQGLARVYYLKNELKAAYDEMTKLLE 808 (929)
Q Consensus 737 Al~~~~~~l~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~----~----~~~a~~~la~~~~~~g~~~~A~~~~~~al~ 808 (929)
......+.++-+||+.|+-+|+|++|+..-+.-+.+ + .-.++.++|.++.-+|+++.|++.|+..+.
T Consensus 189 -----gDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~ 263 (639)
T KOG1130|consen 189 -----GDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLN 263 (639)
T ss_pred -----hhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHH
Confidence 001123578999999999999999999988877766 2 225899999999999999999999998876
Q ss_pred HccCCHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-------hHHH
Q 002375 809 KAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDL-------QMLH 881 (929)
Q Consensus 809 ~~p~~~~~~~~lg~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~-------~~~~ 881 (929)
+. ++.=++.+ .+...+.+|..|.-..++++||+++.+-+.+.... ...|
T Consensus 264 LA-------------------ielg~r~v-----EAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~Racw 319 (639)
T KOG1130|consen 264 LA-------------------IELGNRTV-----EAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACW 319 (639)
T ss_pred HH-------------------HHhcchhH-----HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 52 11111111 23456678999999999999999999988765432 2455
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhcc
Q 002375 882 LRAAFYESIGDLTSAIRDSQAALCL 906 (929)
Q Consensus 882 ~la~~~~~~g~~~~A~~~~~~al~l 906 (929)
.+|..|...|..++|+.+.++.+++
T Consensus 320 SLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 320 SLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 7899999999999999998888765
No 104
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.33 E-value=6.3e-08 Score=106.91 Aligned_cols=414 Identities=14% Similarity=0.031 Sum_probs=258.9
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccC---CHhHHHHHHHHHHHhccHHHHHHHHHHHHhh
Q 002375 501 IVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL---SVDCLELRAWLFIAADDYESALRDTLALLAL 577 (929)
Q Consensus 501 i~~~~~al~l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~---~~~~~~~~a~~~~~~g~~~eA~~~~~~al~~ 577 (929)
-.+|++++-.--+-+..|......++.+|+...-...|++++..-| +...|-.........+-.+-++..|++-|+.
T Consensus 88 n~c~er~lv~mHkmpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~ 167 (835)
T KOG2047|consen 88 NNCFERCLVFMHKMPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV 167 (835)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 3456666666666677777777777888888777777777775554 2333444444445566667777777777777
Q ss_pred cCCchhhhccccHHHHHHHHHHhhcccchHHHHH----------------------Hhhhccccccc-ccc---HHHHHH
Q 002375 578 ESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWI----------------------KLYDRWSSVDD-IGS---LAVINQ 631 (929)
Q Consensus 578 ~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l----------------------~l~~~~~~~d~-~~a---l~~~~~ 631 (929)
.|....-+ + ......+++++|...+ ++.+..+...+ ..+ -+.+..
T Consensus 168 ~P~~~eey--------i-e~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~ 238 (835)
T KOG2047|consen 168 APEAREEY--------I-EYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRG 238 (835)
T ss_pred CHHHHHHH--------H-HHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHh
Confidence 77665110 0 0111222333332111 11111111111 111 233344
Q ss_pred HHhcCCCC-hHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC---chHHHHH-----HHHHHHHHcC-------------C
Q 002375 632 MLINDPGK-SFLRFRQSLLLLRLNCQKAAMRCLRLARNHSS---SEHERLV-----YEGWILYDTG-------------H 689 (929)
Q Consensus 632 al~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p---~~~~~~~-----~lg~~~~~~g-------------~ 689 (929)
.+...++. ..+|..+|..|.+.|.+++|...|++++..-- +...++. .-..+...++ +
T Consensus 239 gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~d 318 (835)
T KOG2047|consen 239 GIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVD 318 (835)
T ss_pred hcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhh
Confidence 55555544 46889999999999999999999999986532 2222221 1111111111 2
Q ss_pred HHHHHHHHHHHHhhccch-HH------HHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCc---hhHHHHHHHHHHH
Q 002375 690 REEALSRAEKSISIERTF-EA------FFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLR---KGQALNNLGSIYV 759 (929)
Q Consensus 690 ~~eA~~~~~~al~l~p~~-~a------~~~l~~~l~~~~~~~~~~~~a~~~~~~Al~~~~~~l~---~~~a~~~lg~~~~ 759 (929)
.+-....|+..+...|-. .. ..+....+....+..++....+.-|.+|+....-... ++..|..+|..|.
T Consensus 319 l~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe 398 (835)
T KOG2047|consen 319 LELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYE 398 (835)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHH
Confidence 344455566655543322 00 0112222233334455566666777787765443322 3589999999999
Q ss_pred HcCCHHHHHHHHHHHHcCCC------hHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccC------------------CHH
Q 002375 760 ECGKLDQAENCYINALDIKH------TRAHQGLARVYYLKNELKAAYDEMTKLLEKAQY------------------SAS 815 (929)
Q Consensus 760 ~~g~~~eA~~~~~~al~~~~------~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~------------------~~~ 815 (929)
..|+.+.|...|+++.+... ..+|..-|..-....+++.|++.++++...-.+ +..
T Consensus 399 ~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlk 478 (835)
T KOG2047|consen 399 NNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLK 478 (835)
T ss_pred hcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHH
Confidence 99999999999999999832 358999999999999999999999998753221 112
Q ss_pred HHHHHh----hcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCch---HHH-HHHHH-
Q 002375 816 AFEKRS----EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQ---MLH-LRAAF- 886 (929)
Q Consensus 816 ~~~~lg----~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~---~~~-~la~~- 886 (929)
+|...+ ..|-++.....|++.+.+.--.|....+.|..+....-+++|.+.|++.+.+.+-.. .|. .+-.+
T Consensus 479 iWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi 558 (835)
T KOG2047|consen 479 IWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFI 558 (835)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHH
Confidence 233333 458888889999999998888889999999999888899999999999998865432 222 33222
Q ss_pred -HHHcCCHHHHHHHHHHHhccCCCC-H-HHHHHHHHHHhh
Q 002375 887 -YESIGDLTSAIRDSQAALCLDPNH-M-ETLDLYNRARDQ 923 (929)
Q Consensus 887 -~~~~g~~~~A~~~~~~al~l~P~~-~-~a~~~~~~l~~~ 923 (929)
-...-..+.|...|++||+..|.. . ..+.+|+++++.
T Consensus 559 ~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe 598 (835)
T KOG2047|consen 559 KRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEE 598 (835)
T ss_pred HHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 233447889999999999988721 1 234455555543
No 105
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.28 E-value=1.7e-09 Score=128.60 Aligned_cols=154 Identities=12% Similarity=0.008 Sum_probs=129.5
Q ss_pred HhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccC-CHhHHHHHHHHHHHhccHHHHHHHHHHHHhhcCCchhhhc
Q 002375 508 SELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHG 586 (929)
Q Consensus 508 l~l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~ 586 (929)
...+|.+..++..+...+...+++++|+..++.+++..| .+..++..|.++++.+++..|... .++...+.+.
T Consensus 24 ~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~---- 97 (906)
T PRK14720 24 NNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNL---- 97 (906)
T ss_pred ccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhccccc----
Confidence 345788999999999999999999999999999998888 777888889999999998888777 7777766665
Q ss_pred cccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 002375 587 RVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLA 666 (929)
Q Consensus 587 ~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~d~~~al~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~a 666 (929)
.| .+ +..+.+.+...+++-.+++.+|.+|-.+|++++|...|+++
T Consensus 98 ----------------~~-~~------------------ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~ 142 (906)
T PRK14720 98 ----------------KW-AI------------------VEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERL 142 (906)
T ss_pred ----------------ch-hH------------------HHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 22 12 22224555556777889999999999999999999999999
Q ss_pred HhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 002375 667 RNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISI 703 (929)
Q Consensus 667 l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~l 703 (929)
++.+|+++.++.++|..|... +.++|+.++.+|+..
T Consensus 143 L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~ 178 (906)
T PRK14720 143 VKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR 178 (906)
T ss_pred HhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH
Confidence 999999999999999999999 999999999998863
No 106
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.28 E-value=2.4e-08 Score=114.24 Aligned_cols=126 Identities=17% Similarity=0.068 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch-HHHHHHHHHHHh
Q 002375 641 FLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILAD 719 (929)
Q Consensus 641 ~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~l~p~~-~a~~~l~~~l~~ 719 (929)
++++.++..|...|++++|+.++++++++.|..++.+...|.++...|++.+|...++.+-.+++.+ -.-...+..+.+
T Consensus 195 w~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LR 274 (517)
T PF12569_consen 195 WTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLR 274 (517)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHH
Confidence 4668899999999999999999999999999999999999999999999999999999999999988 333444455556
Q ss_pred cCCCCCChHHHHHHHHHHhhchhccCch-------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHcC
Q 002375 720 TNLDPESSTYVIQLLEEALRCPSDGLRK-------------GQALNNLGSIYVECGKLDQAENCYINALDI 777 (929)
Q Consensus 720 ~~~~~~~~~~a~~~~~~Al~~~~~~l~~-------------~~a~~~lg~~~~~~g~~~eA~~~~~~al~~ 777 (929)
.+ ..++|.+......+. .......|.+|.+.|++..|+..|..+.+.
T Consensus 275 a~-----------~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 275 AG-----------RIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKH 334 (517)
T ss_pred CC-----------CHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 66 667776665544331 133355799999999999999999988776
No 107
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.27 E-value=2.3e-10 Score=115.59 Aligned_cols=160 Identities=18% Similarity=0.092 Sum_probs=131.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHh----hcCCHHHH
Q 002375 754 LGSIYVECGKLDQAENCYINALDIKHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS----EYSDREMA 829 (929)
Q Consensus 754 lg~~~~~~g~~~eA~~~~~~al~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg----~~~~~~~A 829 (929)
-+..|...|+++......++...-.. .+...++.++++..+++++..+|++...|..+| ..|++++|
T Consensus 22 ~~~~Y~~~g~~~~v~~~~~~~~~~~~---------~~~~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A 92 (198)
T PRK10370 22 CVGSYLLSPKWQAVRAEYQRLADPLH---------QFASQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNA 92 (198)
T ss_pred HHHHHHHcchHHHHHHHHHHHhCccc---------cccCchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 34567888988886555432221110 111366778999999999999999999999999 67999999
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHHH-HhcCC--HHHHHHHHHHHHhcCCCchHHH-HHHHHHHHcCCHHHHHHHHHHHhc
Q 002375 830 KNDLNMATQLDPLRTYPYRYRAAVL-MDDQK--EVEAVEELSKAIAFKPDLQMLH-LRAAFYESIGDLTSAIRDSQAALC 905 (929)
Q Consensus 830 ~~~~~~al~l~p~~~~~~~~la~~~-~~~g~--~~eA~~~l~kal~~~p~~~~~~-~la~~~~~~g~~~~A~~~~~~al~ 905 (929)
+..|+++++++|+++..+..+|.++ ...|+ +++|...++++++.+|++...+ ++|..+...|++++|+..|+++++
T Consensus 93 ~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 93 LLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9999999999999999999999975 67777 5999999999999999997665 779999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHh
Q 002375 906 LDPNHMETLDLYNRARD 922 (929)
Q Consensus 906 l~P~~~~a~~~~~~l~~ 922 (929)
++|.+.+-......|+.
T Consensus 173 l~~~~~~r~~~i~~i~~ 189 (198)
T PRK10370 173 LNSPRVNRTQLVESINM 189 (198)
T ss_pred hCCCCccHHHHHHHHHH
Confidence 99887766666665553
No 108
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.25 E-value=7.3e-07 Score=98.74 Aligned_cols=434 Identities=11% Similarity=-0.014 Sum_probs=261.0
Q ss_pred HHHHHHHHhhHHHHhcccHHHHHHHHHHHHhcCccccH-HHHHHHHHHhchHHHHHHHHHhhhcCCCcchhhhH-----H
Q 002375 417 QRMLALHQLGCVMFEREEYKDACYYFEAAADAGHIYSL-AGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQ-----E 490 (929)
Q Consensus 417 ~~a~~~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~~~-a~la~~~~~~g~a~~a~~~~~~l~~~~~~~~~~~~-----~ 490 (929)
|..-.+..|+..|.+.|.+++|...|+++++.--.... ..+...|....+...+...-.......+ ..|... +
T Consensus 246 q~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n-~ed~~dl~~~~a 324 (835)
T KOG2047|consen 246 QLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGN-EEDDVDLELHMA 324 (835)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccC-hhhhhhHHHHHH
Confidence 44667788999999999999999999999987333222 2344444444442222221100000000 011110 0
Q ss_pred HHHhhhhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcc-cC-----CH-hHHHHHHHHHHHhcc
Q 002375 491 RSLYNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVF-KL-----SV-DCLELRAWLFIAADD 563 (929)
Q Consensus 491 ~~l~~~~~~Ai~~~~~al~l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~-~~-----~~-~~~~~~a~~~~~~g~ 563 (929)
+.-....+.-+-.=.-++..+|++..-|..+-.+ ..|+..+-+..|..++.. +| ++ ..+...|..|...|+
T Consensus 325 ~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~ 402 (835)
T KOG2047|consen 325 RFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGD 402 (835)
T ss_pred HHHHHHhccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCc
Confidence 0000000011111123567788888888876544 467788888888887742 23 22 347788889999999
Q ss_pred HHHHHHHHHHHHhhcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHH---hcCCCCh
Q 002375 564 YESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQML---INDPGKS 640 (929)
Q Consensus 564 ~~eA~~~~~~al~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~d~~~al~~~~~al---~~~p~~~ 640 (929)
.+.|...|+++.+..-....- ....+..-+.......+++.|...++....-..... +..|.... ..--+..
T Consensus 403 l~~aRvifeka~~V~y~~v~d--La~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~---~~~yd~~~pvQ~rlhrSl 477 (835)
T KOG2047|consen 403 LDDARVIFEKATKVPYKTVED--LAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPE---LEYYDNSEPVQARLHRSL 477 (835)
T ss_pred HHHHHHHHHHhhcCCccchHH--HHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchh---hhhhcCCCcHHHHHHHhH
Confidence 999999999998764333311 113444445555556667777665522111111000 00000000 0001234
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc--ch-HHHHHHHHHH
Q 002375 641 FLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIER--TF-EAFFLKAYIL 717 (929)
Q Consensus 641 ~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~l~p--~~-~a~~~l~~~l 717 (929)
.+|...+......|-++.....|++.+++---.|..-.+.|..+....-+++|.+.|++.+.+.+ .- +.|.....-.
T Consensus 478 kiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkf 557 (835)
T KOG2047|consen 478 KIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKF 557 (835)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHH
Confidence 57788888888999999999999999999888899999999999999999999999999999864 33 6665444333
Q ss_pred HhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhCC--
Q 002375 718 ADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIKHTRAHQGLARVYYLKNE-- 795 (929)
Q Consensus 718 ~~~~~~~~~~~~a~~~~~~Al~~~~~~l~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~~~a~~~la~~~~~~g~-- 795 (929)
.. .......+.+...+++|++... ....-..+...+..--.-|--..|+..|++|-..-+..-.+.+-++|...-.
T Consensus 558 i~-rygg~klEraRdLFEqaL~~Cp-p~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~ 635 (835)
T KOG2047|consen 558 IK-RYGGTKLERARDLFEQALDGCP-PEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEI 635 (835)
T ss_pred HH-HhcCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 32 2233444555555666655211 0000144555666666778888999999998777444433333333332211
Q ss_pred --HHHHHHHHHHHHHHccCCHHH--HHHHh----hcCCHHHHHHHHHHHHhcC-C-CCcHHHHHHHHHHHhcCCH
Q 002375 796 --LKAAYDEMTKLLEKAQYSASA--FEKRS----EYSDREMAKNDLNMATQLD-P-LRTYPYRYRAAVLMDDQKE 860 (929)
Q Consensus 796 --~~~A~~~~~~al~~~p~~~~~--~~~lg----~~~~~~~A~~~~~~al~l~-p-~~~~~~~~la~~~~~~g~~ 860 (929)
.......|+++|+.-|+...- -...+ .+|+.+.|...|.-+-++- | .++..|...-..-.+.|+-
T Consensus 636 yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGne 710 (835)
T KOG2047|consen 636 YGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNE 710 (835)
T ss_pred hCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCH
Confidence 234467888999888875432 12222 5789999999999888764 4 4566677777777788883
No 109
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.25 E-value=1.6e-08 Score=128.16 Aligned_cols=366 Identities=17% Similarity=0.058 Sum_probs=243.2
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhcccCCHhHHHHHHHHHHHhccHHHHHHHHHHHHh-hcCCchhhhccccHHHHHHH
Q 002375 518 YKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLA-LESNYMMFHGRVSGDHLVKL 596 (929)
Q Consensus 518 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~al~-~~p~~~~~~~~~~a~~ll~~ 596 (929)
+...|..+...|++.+|+..+..+-............++.....|++..+...++.+-. ....++ ......+.
T Consensus 344 h~raa~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~------~l~~~~a~ 417 (903)
T PRK04841 344 HRAAAEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENP------RLVLLQAW 417 (903)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCc------chHHHHHH
Confidence 34445667778888888877666532211223345566777777887776666544310 011122 33344566
Q ss_pred HHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCC---------ChHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 002375 597 LNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPG---------KSFLRFRQSLLLLRLNCQKAAMRCLRLAR 667 (929)
Q Consensus 597 ~~~~~~~~~~A~~~l~l~~~~~~~d~~~al~~~~~al~~~p~---------~~~~~~~lg~~~~~~g~~~~A~~~l~~al 667 (929)
+....++++++..++ .++....+. .......++.++...|++++|...+++++
T Consensus 418 ~~~~~g~~~~a~~~l------------------~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al 479 (903)
T PRK04841 418 LAQSQHRYSEVNTLL------------------ARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELAL 479 (903)
T ss_pred HHHHCCCHHHHHHHH------------------HHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 666777888776666 333221110 12344557788889999999999999998
Q ss_pred hcCCch-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch-------HHHHHHHHHHHhcCCCCCChHHHHHHHH
Q 002375 668 NHSSSE-----HERLVYEGWILYDTGHREEALSRAEKSISIERTF-------EAFFLKAYILADTNLDPESSTYVIQLLE 735 (929)
Q Consensus 668 ~~~p~~-----~~~~~~lg~~~~~~g~~~eA~~~~~~al~l~p~~-------~a~~~l~~~l~~~~~~~~~~~~a~~~~~ 735 (929)
...+.. ..+...+|.++...|++++|...+++++...... .....++..+... +....+...++
T Consensus 480 ~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~----G~~~~A~~~~~ 555 (903)
T PRK04841 480 AELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQ----GFLQAAYETQE 555 (903)
T ss_pred hcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHC----CCHHHHHHHHH
Confidence 854432 2355778889999999999999999998764432 2233444444444 45555555566
Q ss_pred HHhhchhccCc-----hhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC----C---ChHHHHHHHHHHHHhCCHHHHHHHH
Q 002375 736 EALRCPSDGLR-----KGQALNNLGSIYVECGKLDQAENCYINALDI----K---HTRAHQGLARVYYLKNELKAAYDEM 803 (929)
Q Consensus 736 ~Al~~~~~~l~-----~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~----~---~~~a~~~la~~~~~~g~~~~A~~~~ 803 (929)
+++......-. ....+..+|.++...|++++|...+.+++.. . ....+..+|.++...|++++|...+
T Consensus 556 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l 635 (903)
T PRK04841 556 KAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYL 635 (903)
T ss_pred HHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 66554443211 1234567899999999999999999999876 1 1346677899999999999999999
Q ss_pred HHHHHHccCCH---HHH--------HHHhhcCCHHHHHHHHHHHHhcCCCCcH----HHHHHHHHHHhcCCHHHHHHHHH
Q 002375 804 TKLLEKAQYSA---SAF--------EKRSEYSDREMAKNDLNMATQLDPLRTY----PYRYRAAVLMDDQKEVEAVEELS 868 (929)
Q Consensus 804 ~~al~~~p~~~---~~~--------~~lg~~~~~~~A~~~~~~al~l~p~~~~----~~~~la~~~~~~g~~~eA~~~l~ 868 (929)
.++....+... ... ......|+.+.|...+.......+.... .+..+|.++...|++++|+..++
T Consensus 636 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ 715 (903)
T PRK04841 636 NRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILE 715 (903)
T ss_pred HHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99987643321 110 1111457888888888776653332222 24678999999999999999999
Q ss_pred HHHhcCCCc------h-HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCH
Q 002375 869 KAIAFKPDL------Q-MLHLRAAFYESIGDLTSAIRDSQAALCLDPNHM 911 (929)
Q Consensus 869 kal~~~p~~------~-~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~ 911 (929)
+++...... . ....+|.++...|+.++|...+++|+++.....
T Consensus 716 ~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~g 765 (903)
T PRK04841 716 ELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRTG 765 (903)
T ss_pred HHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCccc
Confidence 998763221 1 223669999999999999999999999865543
No 110
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.25 E-value=1.4e-10 Score=110.93 Aligned_cols=55 Identities=11% Similarity=0.013 Sum_probs=28.3
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Q 002375 630 NQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWIL 684 (929)
Q Consensus 630 ~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~ 684 (929)
.+++..+|+++.+++.+|.++..+|++++|+..|+++++..|+++..+..+|.+.
T Consensus 82 ~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~ 136 (144)
T PRK15359 82 GHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQ 136 (144)
T ss_pred HHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 3333333444444555555555555555555555555555555555555555443
No 111
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.24 E-value=6.2e-11 Score=120.49 Aligned_cols=107 Identities=22% Similarity=0.253 Sum_probs=97.3
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHH-HHHHHHHHcCCHHHHHHHH
Q 002375 822 EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLH-LRAAFYESIGDLTSAIRDS 900 (929)
Q Consensus 822 ~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~-~la~~~~~~g~~~~A~~~~ 900 (929)
+.++|.+|+..|.+|++++|+++..|.++|.+|.++|.++.|++.++.++.++|.....| .+|.+|..+|++++|++.|
T Consensus 93 ~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~ay 172 (304)
T KOG0553|consen 93 KNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIEAY 172 (304)
T ss_pred HhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHHH
Confidence 457788888888899999999999999999999999999999999999999999998777 5699999999999999999
Q ss_pred HHHhccCCCCHHHHHHHHHHHhhhhhhc
Q 002375 901 QAALCLDPNHMETLDLYNRARDQASHQQ 928 (929)
Q Consensus 901 ~~al~l~P~~~~a~~~~~~l~~~~~~~~ 928 (929)
++||+++|++...+..+..++.+..+++
T Consensus 173 kKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 173 KKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999988776654
No 112
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.23 E-value=8.6e-11 Score=122.42 Aligned_cols=265 Identities=15% Similarity=0.087 Sum_probs=162.8
Q ss_pred HHhhHHHHhcccHHHHHHHHHHHHhcCccccHHHHHHHHHHhchHHHHHHHHHhhhcCCCcchhhhHHHHHhhhhhHHHH
Q 002375 423 HQLGCVMFEREEYKDACYYFEAAADAGHIYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNLGREKIV 502 (929)
Q Consensus 423 ~~lG~~~~~~g~y~~A~~~f~~al~~~~~~~~a~la~~~~~~g~a~~a~~~~~~l~~~~~~~~~~~~~~~l~~~~~~Ai~ 502 (929)
-.-|.-+++.|++...+..|+.|++.+.+... .+..+|.+.|
T Consensus 21 alEGERLck~gdcraGv~ff~aA~qvGTeDl~-tLSAIYsQLG------------------------------------- 62 (639)
T KOG1130|consen 21 ALEGERLCKMGDCRAGVDFFKAALQVGTEDLS-TLSAIYSQLG------------------------------------- 62 (639)
T ss_pred HHHHHHHHhccchhhhHHHHHHHHHhcchHHH-HHHHHHHHhc-------------------------------------
Confidence 34677889999999999999999998655332 2333444444
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHH------HhcccC-CHhHHHHHHHHHHHhccHHHHHHHHHHHH
Q 002375 503 DLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDR------IIVFKL-SVDCLELRAWLFIAADDYESALRDTLALL 575 (929)
Q Consensus 503 ~~~~al~l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~------al~~~~-~~~~~~~~a~~~~~~g~~~eA~~~~~~al 575 (929)
.+|+..++|++|+++-.. .+.-+. ....--++|..+-..|.|++|+....+-+
T Consensus 63 --------------------NAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlKv~G~fdeA~~cc~rhL 122 (639)
T KOG1130|consen 63 --------------------NAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLKVKGAFDEALTCCFRHL 122 (639)
T ss_pred --------------------chhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhhhhcccchHHHHHHHHh
Confidence 444444444444443221 111111 12223355666667777777777766666
Q ss_pred hhcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHHHHhcC
Q 002375 576 ALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNC 655 (929)
Q Consensus 576 ~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~d~~~al~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 655 (929)
.+...-..-....++++.+|.+|...|..-.- ...-+....+.++ ...
T Consensus 123 d~areLgDrv~e~RAlYNlgnvYhakGk~~g~----------------------~~pee~g~f~~ev----------~~a 170 (639)
T KOG1130|consen 123 DFARELGDRVLESRALYNLGNVYHAKGKCTGL----------------------EAPEEKGAFNAEV----------TSA 170 (639)
T ss_pred HHHHHHhHHHhhhHHHhhhhhhhhhcccccCC----------------------CChhhcccccHHH----------HHH
Confidence 55443333233337777788888776653211 0000000000110 012
Q ss_pred HHHHHHHHHHHHhcCCc------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHHHHHhcCCCCCChHH
Q 002375 656 QKAAMRCLRLARNHSSS------EHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTY 729 (929)
Q Consensus 656 ~~~A~~~l~~al~~~p~------~~~~~~~lg~~~~~~g~~~eA~~~~~~al~l~p~~~a~~~l~~~l~~~~~~~~~~~~ 729 (929)
++.|.+.|..-+++... ...++-++|..|+-+|+|+.|+..-+.-+.+...+
T Consensus 171 l~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~ef---------------------- 228 (639)
T KOG1130|consen 171 LENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEF---------------------- 228 (639)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHh----------------------
Confidence 33444444444443222 23467788999999999999999888777665544
Q ss_pred HHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC----C----ChHHHHHHHHHHHHhCCHHHHHH
Q 002375 730 VIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI----K----HTRAHQGLARVYYLKNELKAAYD 801 (929)
Q Consensus 730 a~~~~~~Al~~~~~~l~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~----~----~~~a~~~la~~~~~~g~~~~A~~ 801 (929)
=++|.+ -.++.++|+++.-.|+++.|+++|+..+.+ + ..+.-+.||..|....+++.|+.
T Consensus 229 ----GDrAae--------RRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~ 296 (639)
T KOG1130|consen 229 ----GDRAAE--------RRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAIT 296 (639)
T ss_pred ----hhHHHH--------HHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 011111 356889999999999999999999987765 2 23577889999999999999999
Q ss_pred HHHHHHHHcc
Q 002375 802 EMTKLLEKAQ 811 (929)
Q Consensus 802 ~~~~al~~~p 811 (929)
++.+-+.+..
T Consensus 297 Yh~rHLaIAq 306 (639)
T KOG1130|consen 297 YHQRHLAIAQ 306 (639)
T ss_pred HHHHHHHHHH
Confidence 9998887754
No 113
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.20 E-value=2.7e-09 Score=105.47 Aligned_cols=169 Identities=17% Similarity=0.105 Sum_probs=148.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHcC--CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHh----h
Q 002375 749 QALNNLGSIYVECGKLDQAENCYINALDI--KHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS----E 822 (929)
Q Consensus 749 ~a~~~lg~~~~~~g~~~eA~~~~~~al~~--~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg----~ 822 (929)
..+-....+....|+.+.|..++++.... ++..+....|..+...|++++|+++|+..++.+|.+..++-..- .
T Consensus 53 ~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka 132 (289)
T KOG3060|consen 53 TLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKA 132 (289)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHH
Confidence 34556677788899999999999987665 66778888899999999999999999999999999988776443 5
Q ss_pred cCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHH-HHHHHHHcC---CHHHHHH
Q 002375 823 YSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLHL-RAAFYESIG---DLTSAIR 898 (929)
Q Consensus 823 ~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~-la~~~~~~g---~~~~A~~ 898 (929)
.|+.-+|++.+...++..+.+.++|..++.+|...|+|++|.-++++.+-+.|-++.++. +|.+++-+| ++.-|.+
T Consensus 133 ~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ark 212 (289)
T KOG3060|consen 133 QGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARK 212 (289)
T ss_pred cCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 788899999999999999999999999999999999999999999999999999999884 488888776 6778999
Q ss_pred HHHHHhccCCCCHHHHHHH
Q 002375 899 DSQAALCLDPNHMETLDLY 917 (929)
Q Consensus 899 ~~~~al~l~P~~~~a~~~~ 917 (929)
+|.++++++|.+..++..+
T Consensus 213 yy~~alkl~~~~~ral~GI 231 (289)
T KOG3060|consen 213 YYERALKLNPKNLRALFGI 231 (289)
T ss_pred HHHHHHHhChHhHHHHHHH
Confidence 9999999999777666543
No 114
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.18 E-value=1.1e-07 Score=100.47 Aligned_cols=303 Identities=17% Similarity=0.058 Sum_probs=186.4
Q ss_pred HHHHHHHhhHHHHhcccHHHHHHHHHHHHhcCccccHH--HHHHHHHHhchHHHHHHHHHhhhcCCCcchhhhHHHHHhh
Q 002375 418 RMLALHQLGCVMFEREEYKDACYYFEAAADAGHIYSLA--GLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYN 495 (929)
Q Consensus 418 ~a~~~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~~~a--~la~~~~~~g~a~~a~~~~~~l~~~~~~~~~~~~~~~l~~ 495 (929)
++.....-|..-+..|+|.+|.+...++-+..+....+ .-+++-..+|+
T Consensus 83 ra~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd----------------------------- 133 (400)
T COG3071 83 RARKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGD----------------------------- 133 (400)
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhccc-----------------------------
Confidence 45555667778888899999999998877665554442 22222222222
Q ss_pred hhhHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccC-CHhHHHHHHHHHHHhccHHHHHHHHHH
Q 002375 496 LGREKIVDLNYASELDPT-LSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLA 573 (929)
Q Consensus 496 ~~~~Ai~~~~~al~l~P~-~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~~g~~~eA~~~~~~ 573 (929)
.+.+-..+.++.+..++ .......++..+..+|+++.|.....++++..| +|..+.....+|...|++.+......+
T Consensus 134 -~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~ 212 (400)
T COG3071 134 -EDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPK 212 (400)
T ss_pred -HHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 22455566677777333 345677788888888888888888888888888 778888888888888888888888777
Q ss_pred HHhhcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHHHHh
Q 002375 574 LLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRL 653 (929)
Q Consensus 574 al~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~d~~~al~~~~~al~~~p~~~~~~~~lg~~~~~~ 653 (929)
.-+..--+..-..+.+-....|.+...... +.+.. + ...++..-..-.+++.+....+.-+...
T Consensus 213 L~ka~~l~~~e~~~le~~a~~glL~q~~~~-~~~~g---L------------~~~W~~~pr~lr~~p~l~~~~a~~li~l 276 (400)
T COG3071 213 LRKAGLLSDEEAARLEQQAWEGLLQQARDD-NGSEG---L------------KTWWKNQPRKLRNDPELVVAYAERLIRL 276 (400)
T ss_pred HHHccCCChHHHHHHHHHHHHHHHHHHhcc-ccchH---H------------HHHHHhccHHhhcChhHHHHHHHHHHHc
Confidence 665432222110110111111111111110 00000 0 0011111111122344445555556666
Q ss_pred cCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHHHHHhcCCCCCChHHHHHH
Q 002375 654 NCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQL 733 (929)
Q Consensus 654 g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~l~p~~~a~~~l~~~l~~~~~~~~~~~~a~~~ 733 (929)
|+.++|.+..+.+++..-+.. ....++ ....+++..=++..++.++..|++
T Consensus 277 ~~~~~A~~~i~~~Lk~~~D~~-L~~~~~--~l~~~d~~~l~k~~e~~l~~h~~~-------------------------- 327 (400)
T COG3071 277 GDHDEAQEIIEDALKRQWDPR-LCRLIP--RLRPGDPEPLIKAAEKWLKQHPED-------------------------- 327 (400)
T ss_pred CChHHHHHHHHHHHHhccChh-HHHHHh--hcCCCCchHHHHHHHHHHHhCCCC--------------------------
Confidence 666666666666665543321 111111 123445555555555555555544
Q ss_pred HHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC-CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 002375 734 LEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI-KHTRAHQGLARVYYLKNELKAAYDEMTKLLEK 809 (929)
Q Consensus 734 ~~~Al~~~~~~l~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~-~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~ 809 (929)
+..+..||..+...+.|.+|..+|+.+++. .....+..+|.++.+.|+..+|.+..++++..
T Consensus 328 --------------p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 328 --------------PLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred --------------hhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 567899999999999999999999999999 55678899999999999999999999988743
No 115
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.18 E-value=6.7e-10 Score=112.18 Aligned_cols=115 Identities=18% Similarity=0.141 Sum_probs=89.1
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHH-HHcCC--HHHHHHHHHHHHh
Q 002375 626 LAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWIL-YDTGH--REEALSRAEKSIS 702 (929)
Q Consensus 626 l~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~-~~~g~--~~eA~~~~~~al~ 702 (929)
+..+.++++.+|+++..|..+|.+|...|++++|+..|+++++++|+++.++..+|.++ ...|+ +++|...++++++
T Consensus 59 i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~ 138 (198)
T PRK10370 59 LQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALA 138 (198)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 44557888888888888888888888888888888888888888888888888888864 56666 4888888888888
Q ss_pred hccchHHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCh
Q 002375 703 IERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIKHT 780 (929)
Q Consensus 703 l~p~~~a~~~l~~~l~~~~~~~~~~~~a~~~~~~Al~~~~~~l~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~~ 780 (929)
.+|++ ..++.++|..+...|++++|+.+|+++++..++
T Consensus 139 ~dP~~----------------------------------------~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~ 176 (198)
T PRK10370 139 LDANE----------------------------------------VTALMLLASDAFMQADYAQAIELWQKVLDLNSP 176 (198)
T ss_pred hCCCC----------------------------------------hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 88877 445677777777778888888888887777443
No 116
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.18 E-value=1.9e-09 Score=128.07 Aligned_cols=222 Identities=10% Similarity=-0.055 Sum_probs=172.2
Q ss_pred hcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHH
Q 002375 634 INDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLK 713 (929)
Q Consensus 634 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~l~p~~~a~~~l 713 (929)
..+|.+..++..+...+...+++++|++..+.+++.+|+....++.+|.++.+.+++.+|... .++...+...-+...
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~v 102 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIV 102 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHH
Confidence 447899999999999999999999999999999999999999999999999999999998887 777665554211111
Q ss_pred HHHHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC--CChHHHHHHHHHHH
Q 002375 714 AYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI--KHTRAHQGLARVYY 791 (929)
Q Consensus 714 ~~~l~~~~~~~~~~~~a~~~~~~Al~~~~~~l~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~--~~~~a~~~la~~~~ 791 (929)
.+.+...+ .......+++.+|.+|-.+|++++|...|+++++. +++.++.++|..|.
T Consensus 103 e~~~~~i~---------------------~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~a 161 (906)
T PRK14720 103 EHICDKIL---------------------LYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYE 161 (906)
T ss_pred HHHHHHHH---------------------hhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHH
Confidence 11111111 00011257899999999999999999999999999 56778999999999
Q ss_pred HhCCHHHHHHHHHHHHHHccCCHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHHH--------HHH------------
Q 002375 792 LKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYR--------YRA------------ 851 (929)
Q Consensus 792 ~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~A~~~~~~al~l~p~~~~~~~--------~la------------ 851 (929)
.. +.++|.+++.+++...- ...++.++...+.+.+..+|.+.+.+. .++
T Consensus 162 e~-dL~KA~~m~~KAV~~~i----------~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~ 230 (906)
T PRK14720 162 EE-DKEKAITYLKKAIYRFI----------KKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLY 230 (906)
T ss_pred Hh-hHHHHHHHHHHHHHHHH----------hhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHH
Confidence 99 99999999999987721 224667888889999999997766522 223
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCch-HHHHHHHHHHH
Q 002375 852 AVLMDDQKEVEAVEELSKAIAFKPDLQ-MLHLRAAFYES 889 (929)
Q Consensus 852 ~~~~~~g~~~eA~~~l~kal~~~p~~~-~~~~la~~~~~ 889 (929)
..|...++|++++..++.+++.+|++. ..+.++.+|..
T Consensus 231 ~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~~ 269 (906)
T PRK14720 231 EPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYKE 269 (906)
T ss_pred HHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHHH
Confidence 566677788889999999998888775 44466777773
No 117
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.16 E-value=1.8e-08 Score=101.30 Aligned_cols=272 Identities=14% Similarity=0.081 Sum_probs=181.0
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccC-CHhHHHHHHHHHHHhccHHHHHHHHHHHHh
Q 002375 498 REKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLALLA 576 (929)
Q Consensus 498 ~~Ai~~~~~al~l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~~g~~~eA~~~~~~al~ 576 (929)
..+|+++..-.+.+|.+-..+..+|.||+...+|..|..+|++.-...| ........+...++.+.+..|++....+..
T Consensus 27 ~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D 106 (459)
T KOG4340|consen 27 ADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLD 106 (459)
T ss_pred HHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcC
Confidence 3889999999999999999999999999999999999999999987776 333445568888999999999988776643
Q ss_pred hcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCC--CChHHHHHHHHHHHHhc
Q 002375 577 LESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDP--GKSFLRFRQSLLLLRLN 654 (929)
Q Consensus 577 ~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~d~~~al~~~~~al~~~p--~~~~~~~~lg~~~~~~g 654 (929)
. ..... +...+-+.+....+++.-+ +..++.-| +.+....+.|-+.++.|
T Consensus 107 ~----~~L~~--~~lqLqaAIkYse~Dl~g~----------------------rsLveQlp~en~Ad~~in~gCllykeg 158 (459)
T KOG4340|consen 107 N----PALHS--RVLQLQAAIKYSEGDLPGS----------------------RSLVEQLPSENEADGQINLGCLLYKEG 158 (459)
T ss_pred C----HHHHH--HHHHHHHHHhcccccCcch----------------------HHHHHhccCCCccchhccchheeeccc
Confidence 2 21111 3444444444444454444 44445555 57788899999999999
Q ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----ccchHHHHHHHHHHHhcCCCCCChHHH
Q 002375 655 CQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISI----ERTFEAFFLKAYILADTNLDPESSTYV 730 (929)
Q Consensus 655 ~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~l----~p~~~a~~~l~~~l~~~~~~~~~~~~a 730 (929)
++++|++-|+.+++...-++-.-++++.++++.|+++.|+++..+.++. .|.. +.-....+.+.......
T Consensus 159 qyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPEl------gIGm~tegiDvrsvgNt 232 (459)
T KOG4340|consen 159 QYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPEL------GIGMTTEGIDVRSVGNT 232 (459)
T ss_pred cHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCcc------CccceeccCchhcccch
Confidence 9999999999999999999999999999999999999999988777654 3433 11111111121111111
Q ss_pred HHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC----CChHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 002375 731 IQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI----KHTRAHQGLARVYYLKNELKAAYDEMTKL 806 (929)
Q Consensus 731 ~~~~~~Al~~~~~~l~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~----~~~~a~~~la~~~~~~g~~~~A~~~~~~a 806 (929)
+.....|+ .++++..+.++.+.|+++.|.+.+...--. -+|-.+.+++.. -..+++-+..+-+.-.
T Consensus 233 ~~lh~Sal---------~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFL 302 (459)
T KOG4340|consen 233 LVLHQSAL---------VEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFL 302 (459)
T ss_pred HHHHHHHH---------HHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHH
Confidence 22222222 356667777777788887777665443222 122333344333 1233344444444445
Q ss_pred HHHccCC
Q 002375 807 LEKAQYS 813 (929)
Q Consensus 807 l~~~p~~ 813 (929)
+..+|-.
T Consensus 303 L~~nPfP 309 (459)
T KOG4340|consen 303 LQQNPFP 309 (459)
T ss_pred HhcCCCC
Confidence 5555533
No 118
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.16 E-value=8.3e-10 Score=123.68 Aligned_cols=221 Identities=15% Similarity=0.067 Sum_probs=179.0
Q ss_pred CCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccCCHhHHHHHHHHHHHhccHHHHHHHHHHHHhhcCCchhhhccccHH
Q 002375 512 PTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGD 591 (929)
Q Consensus 512 P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~a~ 591 (929)
|.....-..+|..+...|-...|+..|++.- .+.....||...|+..+|..+..+-++ .|+++ ..+
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erle-------mw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~------~ly 460 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLE-------MWDPVILCYLLLGQHGKAEEINRQELE-KDPDP------RLY 460 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHH-------HHHHHHHHHHHhcccchHHHHHHHHhc-CCCcc------hhH
Confidence 4455566788999999999999999999874 455678889999999999999999998 66666 566
Q ss_pred HHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Q 002375 592 HLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSS 671 (929)
Q Consensus 592 ~ll~~~~~~~~~~~~A~~~l~l~~~~~~~d~~~al~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p 671 (929)
..+|.+..+..-|++|.++. +-.++.+...+|....+.++|.++.++++..++++|
T Consensus 461 c~LGDv~~d~s~yEkawEls------------------------n~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~np 516 (777)
T KOG1128|consen 461 CLLGDVLHDPSLYEKAWELS------------------------NYISARAQRSLALLILSNKDFSEADKHLERSLEINP 516 (777)
T ss_pred HHhhhhccChHHHHHHHHHh------------------------hhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCc
Confidence 67787777666666553333 122344666777777888999999999999999999
Q ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHH
Q 002375 672 SEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQAL 751 (929)
Q Consensus 672 ~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~l~p~~~a~~~l~~~l~~~~~~~~~~~~a~~~~~~Al~~~~~~l~~~~a~ 751 (929)
-....|+.+|.+..+.++++.|.+.|.+++.++|++ ..+|
T Consensus 517 lq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~----------------------------------------~eaW 556 (777)
T KOG1128|consen 517 LQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDN----------------------------------------AEAW 556 (777)
T ss_pred cchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCc----------------------------------------hhhh
Confidence 999999999999999999999999999999999998 5567
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHcC--CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc
Q 002375 752 NNLGSIYVECGKLDQAENCYINALDI--KHTRAHQGLARVYYLKNELKAAYDEMTKLLEKA 810 (929)
Q Consensus 752 ~~lg~~~~~~g~~~eA~~~~~~al~~--~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~ 810 (929)
+|++.+|...|+-.+|...+++|++- ++...|.|.-.+....|.+++|++.|.+.+...
T Consensus 557 nNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 557 NNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred hhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 77777777778888888888888877 566777777777788888888888887777543
No 119
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.16 E-value=3.2e-09 Score=125.76 Aligned_cols=141 Identities=14% Similarity=-0.012 Sum_probs=105.6
Q ss_pred HHHhhcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 002375 573 ALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLR 652 (929)
Q Consensus 573 ~al~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~d~~~al~~~~~al~~~p~~~~~~~~lg~~~~~ 652 (929)
......|++. .++.+++.+....|.+++|..++ ..+++..|++..++..++.++.+
T Consensus 77 ~~~~~~~~~~------~~~~~La~i~~~~g~~~ea~~~l------------------~~~~~~~Pd~~~a~~~~a~~L~~ 132 (694)
T PRK15179 77 DYVRRYPHTE------LFQVLVARALEAAHRSDEGLAVW------------------RGIHQRFPDSSEAFILMLRGVKR 132 (694)
T ss_pred HHHHhccccH------HHHHHHHHHHHHcCCcHHHHHHH------------------HHHHhhCCCcHHHHHHHHHHHHH
Confidence 3344456666 67777777777777777776666 77777777777777777777777
Q ss_pred hcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHHHHHhcCCCCCChHHHHH
Q 002375 653 LNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQ 732 (929)
Q Consensus 653 ~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~l~p~~~a~~~l~~~l~~~~~~~~~~~~a~~ 732 (929)
++++++|+..+++++..+|+++..++.+|.++.+.|++++|+..|++++..+|++
T Consensus 133 ~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~------------------------- 187 (694)
T PRK15179 133 QQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEF------------------------- 187 (694)
T ss_pred hccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCc-------------------------
Confidence 7788888888888777778777777777888778888888888887777766655
Q ss_pred HHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC
Q 002375 733 LLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI 777 (929)
Q Consensus 733 ~~~~Al~~~~~~l~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~ 777 (929)
..++..+|..+...|+.++|...|+++++.
T Consensus 188 ---------------~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 188 ---------------ENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred ---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 455677777777777777777777777777
No 120
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.15 E-value=3.7e-09 Score=105.85 Aligned_cols=177 Identities=21% Similarity=0.122 Sum_probs=146.3
Q ss_pred HHHHHHHHHHHhhcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHH
Q 002375 565 ESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRF 644 (929)
Q Consensus 565 ~eA~~~~~~al~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~d~~~al~~~~~al~~~p~~~~~~~ 644 (929)
..+...+-+....+|++. .+ ..+...+...|+-+.+. .+..+.....|.+..+..
T Consensus 50 ~~a~~al~~~~~~~p~d~------~i-~~~a~a~~~~G~a~~~l------------------~~~~~~~~~~~~d~~ll~ 104 (257)
T COG5010 50 QGAAAALGAAVLRNPEDL------SI-AKLATALYLRGDADSSL------------------AVLQKSAIAYPKDRELLA 104 (257)
T ss_pred hHHHHHHHHHHhcCcchH------HH-HHHHHHHHhcccccchH------------------HHHhhhhccCcccHHHHH
Confidence 335566666677788877 44 44555555656555553 333777777888888888
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHHHHHhcCCCC
Q 002375 645 RQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDP 724 (929)
Q Consensus 645 ~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~l~p~~~a~~~l~~~l~~~~~~~ 724 (929)
.+|....+.|++.+|+..++++....|+++++|..+|.+|.+.|++++|...|.+++++.|+.
T Consensus 105 ~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~----------------- 167 (257)
T COG5010 105 AQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNE----------------- 167 (257)
T ss_pred HHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCC-----------------
Confidence 899999999999999999999999999999999999999999999999999999999998877
Q ss_pred CChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC--CChHHHHHHHHHHHHhCCHHHHHHH
Q 002375 725 ESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI--KHTRAHQGLARVYYLKNELKAAYDE 802 (929)
Q Consensus 725 ~~~~~a~~~~~~Al~~~~~~l~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~--~~~~a~~~la~~~~~~g~~~~A~~~ 802 (929)
+.+.+|+|..+.-.|+++.|..++..+... .+..+..+++.+....|++++|.+.
T Consensus 168 -----------------------p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 168 -----------------------PSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred -----------------------chhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhh
Confidence 566889999999999999999999998877 4677889999999999999999876
Q ss_pred HHHH
Q 002375 803 MTKL 806 (929)
Q Consensus 803 ~~~a 806 (929)
..+-
T Consensus 225 ~~~e 228 (257)
T COG5010 225 AVQE 228 (257)
T ss_pred cccc
Confidence 5443
No 121
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.15 E-value=5.9e-08 Score=97.67 Aligned_cols=385 Identities=13% Similarity=0.045 Sum_probs=224.1
Q ss_pred HhcccHHHHHHHHHHHHhcCccccHH--HHHHHHHHhchHHHHHHHHHhhhcCCCcchhhhHHHHHhhhhhHHHHHHHHH
Q 002375 430 FEREEYKDACYYFEAAADAGHIYSLA--GLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNLGREKIVDLNYA 507 (929)
Q Consensus 430 ~~~g~y~~A~~~f~~al~~~~~~~~a--~la~~~~~~g~a~~a~~~~~~l~~~~~~~~~~~~~~~l~~~~~~Ai~~~~~a 507 (929)
.+..+|++||+++..-.+..|....+ .++.+|+... +...|-.+|++.
T Consensus 21 I~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q------------------------------~f~~AA~CYeQL 70 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQ------------------------------EFALAAECYEQL 70 (459)
T ss_pred HHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHH------------------------------HHHHHHHHHHHH
Confidence 66678999999888877777654432 3333333222 122677788888
Q ss_pred HhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccC-CHhHHHHHHHHHHHhccHHHHHHHHHHHHhhcCCchhhhc
Q 002375 508 SELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHG 586 (929)
Q Consensus 508 l~l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~ 586 (929)
-.+.|......++.|..+++.+.+..|+.......+... ...+....+.+.+..+++..+....++.-.. +..
T Consensus 71 ~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e--n~A---- 144 (459)
T KOG4340|consen 71 GQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE--NEA---- 144 (459)
T ss_pred HhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCC--Ccc----
Confidence 888888888888888888888888888888877764311 3344555666667777777776655543211 222
Q ss_pred cccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 002375 587 RVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLA 666 (929)
Q Consensus 587 ~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~d~~~al~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~a 666 (929)
......|.+....|+++.|...+ +.+++...-++.+-++++.++++.++++.|+++....
T Consensus 145 --d~~in~gCllykegqyEaAvqkF------------------qaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEI 204 (459)
T KOG4340|consen 145 --DGQINLGCLLYKEGQYEAAVQKF------------------QAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEI 204 (459)
T ss_pred --chhccchheeeccccHHHHHHHH------------------HHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 44445677777788888885555 8888888888888888888888888888888887776
Q ss_pred Hhc----CCch-------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch---HHHHHHH
Q 002375 667 RNH----SSSE-------------------------HERLVYEGWILYDTGHREEALSRAEKSISIERTF---EAFFLKA 714 (929)
Q Consensus 667 l~~----~p~~-------------------------~~~~~~lg~~~~~~g~~~eA~~~~~~al~l~p~~---~a~~~l~ 714 (929)
++. .|.. .++++..+.++++.|+++.|.+.+...--..... ....++
T Consensus 205 ieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~- 283 (459)
T KOG4340|consen 205 IERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQ- 283 (459)
T ss_pred HHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHH-
Confidence 653 2211 2455666788899999998887664332111111 122222
Q ss_pred HHHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcCC---ChHHHHHHHHHH-
Q 002375 715 YILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIK---HTRAHQGLARVY- 790 (929)
Q Consensus 715 ~~l~~~~~~~~~~~~a~~~~~~Al~~~~~~l~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~---~~~a~~~la~~~- 790 (929)
++.+..-+++.....++. .+....-|.+.+.++-.+|.+..-|+-|.+.+-.--... -....+.+-..+
T Consensus 284 -Al~n~~~~p~~g~~KLqF------LL~~nPfP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~LLdaLI 356 (459)
T KOG4340|consen 284 -ALMNMDARPTEGFEKLQF------LLQQNPFPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDLLDALI 356 (459)
T ss_pred -HHhcccCCccccHHHHHH------HHhcCCCChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHHHHHHH
Confidence 233333333332222111 111223456788888888888888888877654322221 011223333222
Q ss_pred HHhCCHHHHHHHHHHHHHHccCCH-----HHHHHHhhc--CCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHH
Q 002375 791 YLKNELKAAYDEMTKLLEKAQYSA-----SAFEKRSEY--SDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEA 863 (929)
Q Consensus 791 ~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~lg~~--~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA 863 (929)
...-..++|.+-+.+.-..-.+.. .+...+... .....|++.|+.++++ .-.+....|++|+...+|..+
T Consensus 357 t~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~---YLPVlMa~AkiyW~~~Dy~~v 433 (459)
T KOG4340|consen 357 TCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEK---YLPVLMAQAKIYWNLEDYPMV 433 (459)
T ss_pred hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhccccccHHH
Confidence 233446666555544432211100 000000000 1113344455555443 223455667777777777777
Q ss_pred HHHHHHHHhcCCCchHHH
Q 002375 864 VEELSKAIAFKPDLQMLH 881 (929)
Q Consensus 864 ~~~l~kal~~~p~~~~~~ 881 (929)
.+.|++..+...++..|.
T Consensus 434 Ek~Fr~SvefC~ehd~Wk 451 (459)
T KOG4340|consen 434 EKIFRKSVEFCNDHDVWK 451 (459)
T ss_pred HHHHHHHHhhhcccceee
Confidence 777777777766665554
No 122
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.14 E-value=7.2e-10 Score=105.29 Aligned_cols=122 Identities=18% Similarity=0.126 Sum_probs=98.4
Q ss_pred HHHHHHHHccCCHHHHHHHh----hcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc
Q 002375 802 EMTKLLEKAQYSASAFEKRS----EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDL 877 (929)
Q Consensus 802 ~~~~al~~~p~~~~~~~~lg----~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~ 877 (929)
.+++++..+|++..+...+| ..|++++|+..+++++..+|.++.++..+|.++...|++++|+..++++++.+|++
T Consensus 5 ~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~ 84 (135)
T TIGR02552 5 TLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDD 84 (135)
T ss_pred hHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 45566666666666555555 35666777777777777778888888999999999999999999999999999988
Q ss_pred hHHH-HHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHhh
Q 002375 878 QMLH-LRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNRARDQ 923 (929)
Q Consensus 878 ~~~~-~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~l~~~ 923 (929)
+..+ .+|.++...|++++|+..|+++++++|++........++.+.
T Consensus 85 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 131 (135)
T TIGR02552 85 PRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSELKERAEAM 131 (135)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 6555 779999999999999999999999999999877777766543
No 123
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.14 E-value=5e-09 Score=124.12 Aligned_cols=150 Identities=13% Similarity=0.067 Sum_probs=136.6
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHH
Q 002375 630 NQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEA 709 (929)
Q Consensus 630 ~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~l~p~~~a 709 (929)
.......|.++.+++.+|.+....|.+++|...++.+++..|++..++..++.++.+.+++++|+..+++++..+|++
T Consensus 76 ~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~-- 153 (694)
T PRK15179 76 LDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSS-- 153 (694)
T ss_pred HHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCC--
Confidence 445566789999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC--CChHHHHHHH
Q 002375 710 FFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI--KHTRAHQGLA 787 (929)
Q Consensus 710 ~~~l~~~l~~~~~~~~~~~~a~~~~~~Al~~~~~~l~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~--~~~~a~~~la 787 (929)
..+++.+|.++...|++++|+..|++++.. +++.++.++|
T Consensus 154 --------------------------------------~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a 195 (694)
T PRK15179 154 --------------------------------------AREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWA 195 (694)
T ss_pred --------------------------------------HHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 566888899999999999999999999976 5568999999
Q ss_pred HHHHHhCCHHHHHHHHHHHHHHccCCHHHHHH
Q 002375 788 RVYYLKNELKAAYDEMTKLLEKAQYSASAFEK 819 (929)
Q Consensus 788 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 819 (929)
.++...|+.++|...|+++++...+-...|.+
T Consensus 196 ~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~ 227 (694)
T PRK15179 196 QSLTRRGALWRARDVLQAGLDAIGDGARKLTR 227 (694)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhhCcchHHHHH
Confidence 99999999999999999999887665555443
No 124
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.12 E-value=1.3e-07 Score=119.86 Aligned_cols=381 Identities=13% Similarity=-0.026 Sum_probs=240.4
Q ss_pred HHHHHHHhhHHHHhcccHHHHHHHHHHHHhcCccccHH----HHHHHHHHhchHHHHHHHHHhhhc----CCCcchhhhH
Q 002375 418 RMLALHQLGCVMFEREEYKDACYYFEAAADAGHIYSLA----GLARAKYKVGQQYSAYKLINSIIS----EHKPTGWMYQ 489 (929)
Q Consensus 418 ~a~~~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~~~a----~la~~~~~~g~a~~a~~~~~~l~~----~~~~~~~~~~ 489 (929)
....+...+..+...|++.+|+.++..+ +...... ..+......|.... ........+ ...+......
T Consensus 340 ~~~lh~raa~~~~~~g~~~~Al~~a~~a---~d~~~~~~ll~~~a~~l~~~g~~~~-l~~~l~~lp~~~~~~~~~l~~~~ 415 (903)
T PRK04841 340 LPELHRAAAEAWLAQGFPSEAIHHALAA---GDAQLLRDILLQHGWSLFNQGELSL-LEECLNALPWEVLLENPRLVLLQ 415 (903)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHC---CCHHHHHHHHHHhHHHHHhcCChHH-HHHHHHhCCHHHHhcCcchHHHH
Confidence 3455566777788899999988766554 2221111 12233333444222 222222222 1123333334
Q ss_pred HHHHhhhhh--HHHHHHHHHHhcCCC---------ChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccCC--H----hHHH
Q 002375 490 ERSLYNLGR--EKIVDLNYASELDPT---------LSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS--V----DCLE 552 (929)
Q Consensus 490 ~~~l~~~~~--~Ai~~~~~al~l~P~---------~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~~--~----~~~~ 552 (929)
+......++ ++...+..+.+..+. .......+|.++...|++++|...+++++...+. . ....
T Consensus 416 a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~ 495 (903)
T PRK04841 416 AWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATS 495 (903)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHH
Confidence 444444444 777777777654221 1234456788889999999999999999874431 1 2356
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHhhcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHH
Q 002375 553 LRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQM 632 (929)
Q Consensus 553 ~~a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~d~~~al~~~~~a 632 (929)
.+|.++...|++++|...+++++..............+...++.++...|+++.|...+ .++
T Consensus 496 ~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~------------------~~a 557 (903)
T PRK04841 496 VLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQ------------------EKA 557 (903)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHH------------------HHH
Confidence 67888899999999999999999875543322222245667788889999999997766 444
Q ss_pred Hhc-----C---CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-----chHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002375 633 LIN-----D---PGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSS-----SEHERLVYEGWILYDTGHREEALSRAEK 699 (929)
Q Consensus 633 l~~-----~---p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p-----~~~~~~~~lg~~~~~~g~~~eA~~~~~~ 699 (929)
+.. . +.....+..+|.++...|++++|...+++++.... .....+..+|.++...|++++|...+++
T Consensus 558 l~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~ 637 (903)
T PRK04841 558 FQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNR 637 (903)
T ss_pred HHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 432 1 11233456788999999999999999999987532 2355667789999999999999999999
Q ss_pred HHhhccchHHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcCC-
Q 002375 700 SISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIK- 778 (929)
Q Consensus 700 al~l~p~~~a~~~l~~~l~~~~~~~~~~~~a~~~~~~Al~~~~~~l~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~- 778 (929)
+..+.+...... .+ . ..........+...|+.+.|...+.......
T Consensus 638 a~~~~~~~~~~~---------------------~~---~---------~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~ 684 (903)
T PRK04841 638 LENLLGNGRYHS---------------------DW---I---------ANADKVRLIYWQMTGDKEAAANWLRQAPKPEF 684 (903)
T ss_pred HHHHHhcccccH---------------------hH---h---------hHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCC
Confidence 877543220000 00 0 0000111233455788888888877665431
Q ss_pred -Ch----HHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Q 002375 779 -HT----RAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAV 853 (929)
Q Consensus 779 -~~----~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~ 853 (929)
.. ..+..++.++...|++++|...+++++........ ......++..+|.+
T Consensus 685 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~------------------------~~~~a~~~~~la~a 740 (903)
T PRK04841 685 ANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRL------------------------MSDLNRNLILLNQL 740 (903)
T ss_pred ccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCc------------------------hHHHHHHHHHHHHH
Confidence 11 12467888899999999999998888775322111 01123455667777
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCc
Q 002375 854 LMDDQKEVEAVEELSKAIAFKPDL 877 (929)
Q Consensus 854 ~~~~g~~~eA~~~l~kal~~~p~~ 877 (929)
+...|+.++|...+.+++++....
T Consensus 741 ~~~~G~~~~A~~~L~~Al~la~~~ 764 (903)
T PRK04841 741 YWQQGRKSEAQRVLLEALKLANRT 764 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHhCcc
Confidence 888888888888888888766544
No 125
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.11 E-value=5.3e-09 Score=104.70 Aligned_cols=178 Identities=13% Similarity=0.009 Sum_probs=161.2
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccC-CHhHHHHHHHHHHHhccHHHHHHHHHHHHhh
Q 002375 499 EKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLALLAL 577 (929)
Q Consensus 499 ~Ai~~~~~al~l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~~g~~~eA~~~~~~al~~ 577 (929)
.+...+-+....+|++..+ ..++..+...|+-+.+.....++....+ ++..+...|...+..|+|.+|+..++++...
T Consensus 51 ~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l 129 (257)
T COG5010 51 GAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL 129 (257)
T ss_pred HHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc
Confidence 5667777888899999999 9999999999999999999988765554 6666766899999999999999999999999
Q ss_pred cCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHH
Q 002375 578 ESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQK 657 (929)
Q Consensus 578 ~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~d~~~al~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~ 657 (929)
.|+++ +++..+|.++.+.|+.+.|..-+ .+++++.|+++.+..++|..|.-.|+++
T Consensus 130 ~p~d~------~~~~~lgaaldq~Gr~~~Ar~ay------------------~qAl~L~~~~p~~~nNlgms~~L~gd~~ 185 (257)
T COG5010 130 APTDW------EAWNLLGAALDQLGRFDEARRAY------------------RQALELAPNEPSIANNLGMSLLLRGDLE 185 (257)
T ss_pred CCCCh------hhhhHHHHHHHHccChhHHHHHH------------------HHHHHhccCCchhhhhHHHHHHHcCCHH
Confidence 99999 88999999999999999996555 9999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002375 658 AAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSI 701 (929)
Q Consensus 658 ~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al 701 (929)
.|..++..+....+.+..+..+++.+....|++++|.....+-+
T Consensus 186 ~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 186 DAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQEL 229 (257)
T ss_pred HHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhccccc
Confidence 99999999999999999999999999999999999988765543
No 126
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.08 E-value=2.2e-08 Score=99.19 Aligned_cols=181 Identities=17% Similarity=0.042 Sum_probs=148.7
Q ss_pred cCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccC-CHhHHHHHHHHHHHhccHHHHHHHHHHHHhhcCCchhhhccc
Q 002375 510 LDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRV 588 (929)
Q Consensus 510 l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~ 588 (929)
+.|+....|-....+....|+.+-|..++++.-..-| ++......|..+-..|++++|+++|+..++.+|.+...+.
T Consensus 47 ~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~K-- 124 (289)
T KOG3060|consen 47 LGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRK-- 124 (289)
T ss_pred cCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHH--
Confidence 4455555666667788888999999999999765556 7777777888999999999999999999999999983322
Q ss_pred cHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 002375 589 SGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARN 668 (929)
Q Consensus 589 ~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~d~~~al~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~ 668 (929)
-.-.+...+|..-+|+.-+ ...++..+++.++|..++.+|...|+|++|.-++++.+-
T Consensus 125 ----RKlAilka~GK~l~aIk~l------------------n~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 125 ----RKLAILKAQGKNLEAIKEL------------------NEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred ----HHHHHHHHcCCcHHHHHHH------------------HHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 2334445666666774444 888889999999999999999999999999999999999
Q ss_pred cCCchHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhccch-HHHHHHH
Q 002375 669 HSSSEHERLVYEGWILYDTGH---REEALSRAEKSISIERTF-EAFFLKA 714 (929)
Q Consensus 669 ~~p~~~~~~~~lg~~~~~~g~---~~eA~~~~~~al~l~p~~-~a~~~l~ 714 (929)
+.|.++-.+..+|.+++-.|. ++-|.++|.++++++|.+ .+++.+.
T Consensus 183 ~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~ 232 (289)
T KOG3060|consen 183 IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIY 232 (289)
T ss_pred cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHH
Confidence 999999999999999988775 677999999999999966 6555443
No 127
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.08 E-value=3.4e-09 Score=118.89 Aligned_cols=216 Identities=16% Similarity=0.112 Sum_probs=157.4
Q ss_pred CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHHH
Q 002375 637 PGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYI 716 (929)
Q Consensus 637 p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~l~p~~~a~~~l~~~ 716 (929)
|........++.++...|....|+..+++ .+.|-....+|...|+..+|.....+-++.+|+...|..+|..
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Er--------lemw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFER--------LEMWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDV 466 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHh--------HHHHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhh
Confidence 45566677899999999999999999998 6678888999999999999999999999855555666666666
Q ss_pred HHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcCC--ChHHHHHHHHHHHHhC
Q 002375 717 LADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKN 794 (929)
Q Consensus 717 l~~~~~~~~~~~~a~~~~~~Al~~~~~~l~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~--~~~a~~~la~~~~~~g 794 (929)
..+.. .|++|.+..+..-. .+...+|......++|+++.++++.+++++ ....|+++|.+..+.+
T Consensus 467 ~~d~s-----------~yEkawElsn~~sa--rA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqle 533 (777)
T KOG1128|consen 467 LHDPS-----------LYEKAWELSNYISA--RAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLE 533 (777)
T ss_pred ccChH-----------HHHHHHHHhhhhhH--HHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHh
Confidence 65554 66777665444322 244455555566777777777777777774 3467777777777777
Q ss_pred CHHHHHHHHHHHHHHccCCHHHHHHHh----hcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 002375 795 ELKAAYDEMTKLLEKAQYSASAFEKRS----EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKA 870 (929)
Q Consensus 795 ~~~~A~~~~~~al~~~p~~~~~~~~lg----~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~ka 870 (929)
+++.|.+.|..++..+|++..+|.+++ ..++..+|...+++|++-+-.+...|-|.-.+..+.|.+++|++.+.+.
T Consensus 534 k~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 534 KEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred hhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 777777777777777777777777666 4566667777777777766666666766666777777777777777766
Q ss_pred Hhc
Q 002375 871 IAF 873 (929)
Q Consensus 871 l~~ 873 (929)
+.+
T Consensus 614 l~~ 616 (777)
T KOG1128|consen 614 LDL 616 (777)
T ss_pred HHh
Confidence 654
No 128
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.02 E-value=5e-09 Score=99.48 Aligned_cols=115 Identities=17% Similarity=0.064 Sum_probs=98.7
Q ss_pred HHHHHHHhhcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHH
Q 002375 569 RDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSL 648 (929)
Q Consensus 569 ~~~~~al~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~d~~~al~~~~~al~~~p~~~~~~~~lg~ 648 (929)
..+++++..+|++. .+...++..+...|++++|..++ ++++..+|.++.++..+|.
T Consensus 4 ~~~~~~l~~~p~~~------~~~~~~a~~~~~~~~~~~A~~~~------------------~~~~~~~p~~~~~~~~la~ 59 (135)
T TIGR02552 4 ATLKDLLGLDSEQL------EQIYALAYNLYQQGRYDEALKLF------------------QLLAAYDPYNSRYWLGLAA 59 (135)
T ss_pred hhHHHHHcCChhhH------HHHHHHHHHHHHcccHHHHHHHH------------------HHHHHhCCCcHHHHHHHHH
Confidence 35667777777776 55666777777777877775555 7777778888889999999
Q ss_pred HHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch
Q 002375 649 LLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF 707 (929)
Q Consensus 649 ~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~l~p~~ 707 (929)
++...|++++|...++++++.+|+++..++.+|.++...|++++|+..++++++.+|++
T Consensus 60 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 118 (135)
T TIGR02552 60 CCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGEN 118 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence 99999999999999999999999999999999999999999999999999999999988
No 129
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.97 E-value=4.5e-09 Score=107.10 Aligned_cols=108 Identities=19% Similarity=0.214 Sum_probs=70.2
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHh----hcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCH
Q 002375 785 GLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS----EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKE 860 (929)
Q Consensus 785 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg----~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~ 860 (929)
.-|.-..+.++|.+|+..|.+||+++|.++..|.+++ ++|.++.|++..+.++.+||....+|..||.+|..+|++
T Consensus 86 ~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 86 NEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcH
Confidence 3455555556666666666666666666666666655 456666666666666666777777777777777777777
Q ss_pred HHHHHHHHHHHhcCCCchHHH-HHHHHHHHcCC
Q 002375 861 VEAVEELSKAIAFKPDLQMLH-LRAAFYESIGD 892 (929)
Q Consensus 861 ~eA~~~l~kal~~~p~~~~~~-~la~~~~~~g~ 892 (929)
++|++.|+++++++|+++.+. .+..+-.++++
T Consensus 166 ~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e 198 (304)
T KOG0553|consen 166 EEAIEAYKKALELDPDNESYKSNLKIAEQKLNE 198 (304)
T ss_pred HHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcC
Confidence 777777777777777777665 44444444433
No 130
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.96 E-value=1.1e-08 Score=109.36 Aligned_cols=258 Identities=17% Similarity=0.066 Sum_probs=173.5
Q ss_pred HHHHhcCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHHHHHhcCCCCCCh
Q 002375 649 LLLRLNCQKAAMRCLRLARNHSSS-EHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESS 727 (929)
Q Consensus 649 ~~~~~g~~~~A~~~l~~al~~~p~-~~~~~~~lg~~~~~~g~~~eA~~~~~~al~l~p~~~a~~~l~~~l~~~~~~~~~~ 727 (929)
-++-.|+|..++...+ ....++. ..+....+.+++..+|+++..+......- .|...+...++..+.. +...
T Consensus 10 n~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~~--~~~l~av~~la~y~~~----~~~~ 82 (290)
T PF04733_consen 10 NQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKKSS--SPELQAVRLLAEYLSS----PSDK 82 (290)
T ss_dssp HHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-TTS--SCCCHHHHHHHHHHCT----STTH
T ss_pred HHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhccCC--ChhHHHHHHHHHHHhC----ccch
Confidence 3455788888887766 3333443 35567788888999998887665543311 3333555555544432 2222
Q ss_pred HHHHHHHHHHhhchhccCc--hhHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhCCHHHHHHHHHH
Q 002375 728 TYVIQLLEEALRCPSDGLR--KGQALNNLGSIYVECGKLDQAENCYINALDIKHTRAHQGLARVYYLKNELKAAYDEMTK 805 (929)
Q Consensus 728 ~~a~~~~~~Al~~~~~~l~--~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~~~a~~~la~~~~~~g~~~~A~~~~~~ 805 (929)
+..+..+++.+ ..... ........|.++...|++++|++.+.+. ++.+.......++...++++.|.+.++.
T Consensus 83 e~~l~~l~~~~---~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~---~~lE~~al~Vqi~L~~~R~dlA~k~l~~ 156 (290)
T PF04733_consen 83 ESALEELKELL---ADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG---GSLELLALAVQILLKMNRPDLAEKELKN 156 (290)
T ss_dssp HCHHHHHHHCC---CTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT---TCHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHH---HhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc---CcccHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 22222222211 11111 1234455677788889999888877654 5667777788899999999999999988
Q ss_pred HHHHccCCH-----HHHHHHhhc-CCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchH
Q 002375 806 LLEKAQYSA-----SAFEKRSEY-SDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQM 879 (929)
Q Consensus 806 al~~~p~~~-----~~~~~lg~~-~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~ 879 (929)
+.+.+.+.. .+|..+..- .++.+|...|+...+..+..+..++.+|.+.+.+|+|++|.+.+.++++.+|+++.
T Consensus 157 ~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d 236 (290)
T PF04733_consen 157 MQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPD 236 (290)
T ss_dssp HHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHH
T ss_pred HHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHH
Confidence 877665543 234444322 46899999999988888888999999999999999999999999999999999976
Q ss_pred HH-HHHHHHHHcCCH-HHHHHHHHHHhccCCCCHHHHHHHHH
Q 002375 880 LH-LRAAFYESIGDL-TSAIRDSQAALCLDPNHMETLDLYNR 919 (929)
Q Consensus 880 ~~-~la~~~~~~g~~-~~A~~~~~~al~l~P~~~~a~~~~~~ 919 (929)
.. +++.+...+|+. +.+.+++.+....+|+|+-......+
T Consensus 237 ~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~~~~~~~ 278 (290)
T PF04733_consen 237 TLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLVKDLAEK 278 (290)
T ss_dssp HHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 55 788888889988 66778888888899999987665543
No 131
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.96 E-value=1.9e-07 Score=101.16 Aligned_cols=147 Identities=17% Similarity=0.109 Sum_probs=116.7
Q ss_pred cHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 002375 589 SGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARN 668 (929)
Q Consensus 589 ~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~d~~~al~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~ 668 (929)
.+.+-.+..+...++++.|+..+ ...+...|+|+..+...+.++...|+.++|.+.+++++.
T Consensus 307 aa~YG~A~~~~~~~~~d~A~~~l------------------~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~ 368 (484)
T COG4783 307 AAQYGRALQTYLAGQYDEALKLL------------------QPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALA 368 (484)
T ss_pred HHHHHHHHHHHHhcccchHHHHH------------------HHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Confidence 45555666666777777775555 677777788888888888888999999999999999999
Q ss_pred cCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch-HHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCch
Q 002375 669 HSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRK 747 (929)
Q Consensus 669 ~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~l~p~~-~a~~~l~~~l~~~~~~~~~~~~a~~~~~~Al~~~~~~l~~ 747 (929)
.+|+.+..+.++|.+|++.|++.+|+..+++.+..+|++ ..|..++.++..+|..
T Consensus 369 l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~------------------------ 424 (484)
T COG4783 369 LDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNR------------------------ 424 (484)
T ss_pred cCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCch------------------------
Confidence 999888888889999999999999999999888888888 7777777777777611
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHcC
Q 002375 748 GQALNNLGSIYVECGKLDQAENCYINALDI 777 (929)
Q Consensus 748 ~~a~~~lg~~~~~~g~~~eA~~~~~~al~~ 777 (929)
..+....+..+...|++++|+..+..+.+.
T Consensus 425 ~~a~~A~AE~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 425 AEALLARAEGYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 344566777778888888888888877765
No 132
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.94 E-value=1.3e-08 Score=95.56 Aligned_cols=90 Identities=16% Similarity=0.049 Sum_probs=55.8
Q ss_pred cCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHH-HHHHHHHHcCCHHHHHHHHH
Q 002375 823 YSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLH-LRAAFYESIGDLTSAIRDSQ 901 (929)
Q Consensus 823 ~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~-~la~~~~~~g~~~~A~~~~~ 901 (929)
.|++++|...|+-...++|.+...|++||.++..+|+|++|+..|.+++.++|+++..+ +.|.++...|+.+.|.+.|+
T Consensus 48 ~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~ 127 (157)
T PRK15363 48 VKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCYAIKALK 127 (157)
T ss_pred CCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34455555555555555566666666666666666666666666666666666665444 55666666666666666666
Q ss_pred HHhccCCCCHH
Q 002375 902 AALCLDPNHME 912 (929)
Q Consensus 902 ~al~l~P~~~~ 912 (929)
.|+...-++++
T Consensus 128 ~Ai~~~~~~~~ 138 (157)
T PRK15363 128 AVVRICGEVSE 138 (157)
T ss_pred HHHHHhccChh
Confidence 66666533333
No 133
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.87 E-value=4.2e-08 Score=92.12 Aligned_cols=98 Identities=11% Similarity=-0.025 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHh----hcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHh
Q 002375 781 RAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS----EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMD 856 (929)
Q Consensus 781 ~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg----~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~ 856 (929)
+..+.+|..+...|++++|...|+-+...+|.+...|+.+| ..|++++|+..|.+++.++|+++.++.++|.+++.
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~ 115 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence 56788888888999999999999999999999999999998 67899999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCch
Q 002375 857 DQKEVEAVEELSKAIAFKPDLQ 878 (929)
Q Consensus 857 ~g~~~eA~~~l~kal~~~p~~~ 878 (929)
.|+.+.|.+.|+.++......+
T Consensus 116 lG~~~~A~~aF~~Ai~~~~~~~ 137 (157)
T PRK15363 116 CDNVCYAIKALKAVVRICGEVS 137 (157)
T ss_pred cCCHHHHHHHHHHHHHHhccCh
Confidence 9999999999999999874444
No 134
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.87 E-value=1.9e-08 Score=111.51 Aligned_cols=103 Identities=20% Similarity=0.212 Sum_probs=84.5
Q ss_pred cCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHH-HHHHHHHHcCCHHHHHHHHH
Q 002375 823 YSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLH-LRAAFYESIGDLTSAIRDSQ 901 (929)
Q Consensus 823 ~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~-~la~~~~~~g~~~~A~~~~~ 901 (929)
.|++++|+..|.++++++|.++.++..+|.++...|++++|+..+++++.++|+++..+ .+|.++..+|++++|+..|+
T Consensus 15 ~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~ 94 (356)
T PLN03088 15 DDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALE 94 (356)
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 46666777777777777777788888888888899999999999999999988887655 66888889999999999999
Q ss_pred HHhccCCCCHHHHHHHHHHHhhhh
Q 002375 902 AALCLDPNHMETLDLYNRARDQAS 925 (929)
Q Consensus 902 ~al~l~P~~~~a~~~~~~l~~~~~ 925 (929)
++++++|+++.+...+.++.....
T Consensus 95 ~al~l~P~~~~~~~~l~~~~~kl~ 118 (356)
T PLN03088 95 KGASLAPGDSRFTKLIKECDEKIA 118 (356)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHH
Confidence 999999999888888888765553
No 135
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.86 E-value=2.4e-07 Score=100.44 Aligned_cols=145 Identities=21% Similarity=0.181 Sum_probs=117.5
Q ss_pred CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHh----hcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Q 002375 778 KHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS----EYSDREMAKNDLNMATQLDPLRTYPYRYRAAV 853 (929)
Q Consensus 778 ~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg----~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~ 853 (929)
....++++.+..++..|++++|...++.++...|+|+..+...+ +.++..+|.+.+++++.++|..+..+.++|.+
T Consensus 304 ~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~a 383 (484)
T COG4783 304 GGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQA 383 (484)
T ss_pred cchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHH
Confidence 44568888999999999999999999999999999998888777 56889999999999999999888899999999
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCchHHH-HHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHh
Q 002375 854 LMDDQKEVEAVEELSKAIAFKPDLQMLH-LRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNRARD 922 (929)
Q Consensus 854 ~~~~g~~~eA~~~l~kal~~~p~~~~~~-~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~l~~ 922 (929)
|++.|++.+|+..++..+..+|+++..| ++|..|..+|+..+|...+-..+.+.-+...+...+.+.++
T Consensus 384 ll~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~ 453 (484)
T COG4783 384 LLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRASQ 453 (484)
T ss_pred HHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999887666 66888877777666666666666665555555555544443
No 136
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.83 E-value=9.5e-08 Score=102.16 Aligned_cols=138 Identities=17% Similarity=0.131 Sum_probs=88.2
Q ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhccchHHHHHHHHHH
Q 002375 640 SFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTG--HREEALSRAEKSISIERTFEAFFLKAYIL 717 (929)
Q Consensus 640 ~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g--~~~eA~~~~~~al~l~p~~~a~~~l~~~l 717 (929)
.+.......+++.+++++.|.+.++.+.+.+.+..-.....+|+.+..| ++.+|...|++.....+..
T Consensus 131 lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t---------- 200 (290)
T PF04733_consen 131 LELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGST---------- 200 (290)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--S----------
T ss_pred ccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCC----------
Confidence 3344444455555555555555555555555554444444455544444 3555555555543322221
Q ss_pred HhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC--CChHHHHHHHHHHHHhCC
Q 002375 718 ADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI--KHTRAHQGLARVYYLKNE 795 (929)
Q Consensus 718 ~~~~~~~~~~~~a~~~~~~Al~~~~~~l~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~--~~~~a~~~la~~~~~~g~ 795 (929)
...++.++.++..+|+|++|...+++++.. ++++++.+++.+....|+
T Consensus 201 ------------------------------~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk 250 (290)
T PF04733_consen 201 ------------------------------PKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGK 250 (290)
T ss_dssp ------------------------------HHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-
T ss_pred ------------------------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCC
Confidence 355778889999999999999999999888 566788999999999998
Q ss_pred H-HHHHHHHHHHHHHccCCHHHH
Q 002375 796 L-KAAYDEMTKLLEKAQYSASAF 817 (929)
Q Consensus 796 ~-~~A~~~~~~al~~~p~~~~~~ 817 (929)
. +.+.+.+.++...+|+++..-
T Consensus 251 ~~~~~~~~l~qL~~~~p~h~~~~ 273 (290)
T PF04733_consen 251 PTEAAERYLSQLKQSNPNHPLVK 273 (290)
T ss_dssp TCHHHHHHHHHCHHHTTTSHHHH
T ss_pred ChhHHHHHHHHHHHhCCCChHHH
Confidence 8 666778888888888887763
No 137
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.79 E-value=2e-06 Score=89.23 Aligned_cols=243 Identities=12% Similarity=0.096 Sum_probs=161.4
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHhcccCCHhH----HHHHHHHHHHhccHHHHHHHHHHHHhhcCCchhhhccccHHH
Q 002375 517 PYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDC----LELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDH 592 (929)
Q Consensus 517 a~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~~a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~a~~ 592 (929)
-....|.-++...++++|+....+.+..-.+... +-....+...+|.|++++..--..+....+.........++.
T Consensus 8 ~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~l 87 (518)
T KOG1941|consen 8 KQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYL 87 (518)
T ss_pred HHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566777788888888888777643221111 222344456677777776654443333222221111124555
Q ss_pred HHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhc---CC--CChHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 002375 593 LVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLIN---DP--GKSFLRFRQSLLLLRLNCQKAAMRCLRLAR 667 (929)
Q Consensus 593 ll~~~~~~~~~~~~A~~~l~l~~~~~~~d~~~al~~~~~al~~---~p--~~~~~~~~lg~~~~~~g~~~~A~~~l~~al 667 (929)
.++..+....++.+++.+- ...+.. .| .-..+...+|.++..++.++++++.|+.|+
T Consensus 88 nlar~~e~l~~f~kt~~y~------------------k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~ 149 (518)
T KOG1941|consen 88 NLARSNEKLCEFHKTISYC------------------KTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKAL 149 (518)
T ss_pred HHHHHHHHHHHhhhHHHHH------------------HHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHH
Confidence 5666666666666554333 222222 11 112456678999999999999999999998
Q ss_pred hcCCch------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch--HHHHHHHHHHHhcCCCCCChHHHHHHHHHHhh
Q 002375 668 NHSSSE------HERLVYEGWILYDTGHREEALSRAEKSISIERTF--EAFFLKAYILADTNLDPESSTYVIQLLEEALR 739 (929)
Q Consensus 668 ~~~p~~------~~~~~~lg~~~~~~g~~~eA~~~~~~al~l~p~~--~a~~~l~~~l~~~~~~~~~~~~a~~~~~~Al~ 739 (929)
+....+ -.++..+|.++....++++|+-+..+|.++-.+. ..|.. .|.
T Consensus 150 ~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~--------------------kyr---- 205 (518)
T KOG1941|consen 150 RYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSL--------------------KYR---- 205 (518)
T ss_pred HHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhH--------------------HHH----
Confidence 765433 3567889999999999999999999988875543 11110 111
Q ss_pred chhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC----C----ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 002375 740 CPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI----K----HTRAHQGLARVYYLKNELKAAYDEMTKLLEK 809 (929)
Q Consensus 740 ~~~~~l~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~----~----~~~a~~~la~~~~~~g~~~~A~~~~~~al~~ 809 (929)
..+++.++..+..+|+..+|.++.+++.++ + ++.....+|.+|...|+.+.|...|+++...
T Consensus 206 --------~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~ 275 (518)
T KOG1941|consen 206 --------AMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGT 275 (518)
T ss_pred --------HHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHH
Confidence 234788999999999999999999999887 2 2356778999999999999999999998865
No 138
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.78 E-value=1.2e-07 Score=87.47 Aligned_cols=112 Identities=14% Similarity=0.072 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCH
Q 002375 781 RAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKE 860 (929)
Q Consensus 781 ~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~ 860 (929)
+.++.+|..+...|++++|.+.+.+++...|++ +..+.+++.+|.++...|++
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---------------------------~~~~~~~~~l~~~~~~~~~~ 55 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKS---------------------------TYAPNAHYWLGEAYYAQGKY 55 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc---------------------------cccHHHHHHHHHHHHhhccH
Confidence 466777777788888877777777777666543 12246778899999999999
Q ss_pred HHHHHHHHHHHhcCCCch----HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHH
Q 002375 861 VEAVEELSKAIAFKPDLQ----MLHLRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNR 919 (929)
Q Consensus 861 ~eA~~~l~kal~~~p~~~----~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~ 919 (929)
++|+..|++++...|+++ .++.+|.++..+|++++|+..++++++..|+++.+.....|
T Consensus 56 ~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 118 (119)
T TIGR02795 56 ADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAKLAQKR 118 (119)
T ss_pred HHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHHHHHhc
Confidence 999999999999988852 34577999999999999999999999999999887766554
No 139
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.76 E-value=6e-07 Score=91.41 Aligned_cols=177 Identities=17% Similarity=0.113 Sum_probs=116.0
Q ss_pred HHHHHHHhhHHHHhcccHHHHHHHHHHHHhcCccccHHHHHHHHHHhchHHHHHHHHHhhhcCCCcchhhhHHHHHhhhh
Q 002375 418 RMLALHQLGCVMFEREEYKDACYYFEAAADAGHIYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNLG 497 (929)
Q Consensus 418 ~a~~~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~~~a~la~~~~~~g~a~~a~~~~~~l~~~~~~~~~~~~~~~l~~~~ 497 (929)
.+..++..|...+..|+|.+|+..|++.+...|....+
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a------------------------------------------ 41 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYA------------------------------------------ 41 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTH------------------------------------------
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHH------------------------------------------
Confidence 45678889999999999999999999988876665541
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccC----CHhHHHHHHHHHHHh-----------c
Q 002375 498 REKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL----SVDCLELRAWLFIAA-----------D 562 (929)
Q Consensus 498 ~~Ai~~~~~al~l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~----~~~~~~~~a~~~~~~-----------g 562 (929)
+.+.+.+|.+++..|+++.|+..+++.+...| .+.+++.+|.+++.. +
T Consensus 42 -----------------~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~ 104 (203)
T PF13525_consen 42 -----------------PQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQT 104 (203)
T ss_dssp -----------------HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---H
T ss_pred -----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccchhcccChH
Confidence 22344555666666666666666666665555 223455555555433 3
Q ss_pred cHHHHHHHHHHHHhhcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHH
Q 002375 563 DYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFL 642 (929)
Q Consensus 563 ~~~eA~~~~~~al~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~d~~~al~~~~~al~~~p~~~~~ 642 (929)
...+|+..|+..+...|+..... .+...+..+.. .+ +.-
T Consensus 105 ~~~~A~~~~~~li~~yP~S~y~~---~A~~~l~~l~~--------------------------------~l------a~~ 143 (203)
T PF13525_consen 105 STRKAIEEFEELIKRYPNSEYAE---EAKKRLAELRN--------------------------------RL------AEH 143 (203)
T ss_dssp HHHHHHHHHHHHHHH-TTSTTHH---HHHHHHHHHHH--------------------------------HH------HHH
T ss_pred HHHHHHHHHHHHHHHCcCchHHH---HHHHHHHHHHH--------------------------------HH------HHH
Confidence 45689999999999999988210 11111111111 11 122
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCch---HHHHHHHHHHHHHcCCHHHHH
Q 002375 643 RFRQSLLLLRLNCQKAAMRCLRLARNHSSSE---HERLVYEGWILYDTGHREEAL 694 (929)
Q Consensus 643 ~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~---~~~~~~lg~~~~~~g~~~eA~ 694 (929)
-+..|..|.+.|.+..|+.-++.+++..|+. .+++..++..|..+|..+.|.
T Consensus 144 e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 144 ELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 3568899999999999999999999999986 467888999999999988554
No 140
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.74 E-value=1.5e-06 Score=90.66 Aligned_cols=202 Identities=14% Similarity=0.039 Sum_probs=136.1
Q ss_pred CChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHH---HHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHH
Q 002375 638 GKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHER---LVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKA 714 (929)
Q Consensus 638 ~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~---~~~lg~~~~~~g~~~eA~~~~~~al~l~p~~~a~~~l~ 714 (929)
..+..++..|..+...|++++|+..|++++...|..+.+ .+.+|.++++.+++++|+..+++.++..|+++
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~------ 103 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHP------ 103 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCC------
Confidence 356667788888888899999999999998888877544 47888899999999999999999999888770
Q ss_pred HHHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhC
Q 002375 715 YILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIKHTRAHQGLARVYYLKN 794 (929)
Q Consensus 715 ~~l~~~~~~~~~~~~a~~~~~~Al~~~~~~l~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~~~a~~~la~~~~~~g 794 (929)
..+.+++.+|.++...++- .+..-..++ .......
T Consensus 104 -------------------------------~~~~a~Y~~g~~~~~~~~~-----~~~~~~~~~---------~~~rD~~ 138 (243)
T PRK10866 104 -------------------------------NIDYVLYMRGLTNMALDDS-----ALQGFFGVD---------RSDRDPQ 138 (243)
T ss_pred -------------------------------chHHHHHHHHHhhhhcchh-----hhhhccCCC---------ccccCHH
Confidence 0123344444443222210 000000000 0011112
Q ss_pred CHHHHHHHHHHHHHHccCCHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 002375 795 ELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFK 874 (929)
Q Consensus 795 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~ 874 (929)
...+|+..+++.++..|++..+- +|...+... ....+.--+..|..|.+.|.|..|+.-++.+++..
T Consensus 139 ~~~~A~~~~~~li~~yP~S~ya~----------~A~~rl~~l---~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Y 205 (243)
T PRK10866 139 HARAAFRDFSKLVRGYPNSQYTT----------DATKRLVFL---KDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDY 205 (243)
T ss_pred HHHHHHHHHHHHHHHCcCChhHH----------HHHHHHHHH---HHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHC
Confidence 24578899999999999886542 222111111 11122334578889999999999999999999999
Q ss_pred CCch----HHHHHHHHHHHcCCHHHHHHHHHHH
Q 002375 875 PDLQ----MLHLRAAFYESIGDLTSAIRDSQAA 903 (929)
Q Consensus 875 p~~~----~~~~la~~~~~~g~~~~A~~~~~~a 903 (929)
|+.+ .++.++..|..+|..++|.......
T Consensus 206 p~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 206 PDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred CCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 9874 4557799999999999998876543
No 141
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.73 E-value=4.6e-08 Score=80.63 Aligned_cols=67 Identities=15% Similarity=0.189 Sum_probs=64.9
Q ss_pred ChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhcc
Q 002375 639 KSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTG-HREEALSRAEKSISIER 705 (929)
Q Consensus 639 ~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g-~~~eA~~~~~~al~l~p 705 (929)
++..|..+|.++...|++++|+..|+++++.+|+++.+++++|.++..+| ++++|+..++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 57889999999999999999999999999999999999999999999999 79999999999999987
No 142
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.73 E-value=2.8e-07 Score=88.94 Aligned_cols=197 Identities=16% Similarity=0.087 Sum_probs=140.1
Q ss_pred CChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHHHH
Q 002375 638 GKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYIL 717 (929)
Q Consensus 638 ~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~l~p~~~a~~~l~~~l 717 (929)
..+..++.+|..|-.+|-..-|.-.|.+++.+.|+.+++++.+|..+...|+++.|.+.|...++++|.+
T Consensus 63 eRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y---------- 132 (297)
T COG4785 63 ERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY---------- 132 (297)
T ss_pred HHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcc----------
Confidence 3467889999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCChHHHHHHHHHH-HHhCCH
Q 002375 718 ADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIKHTRAHQGLARVY-YLKNEL 796 (929)
Q Consensus 718 ~~~~~~~~~~~~a~~~~~~Al~~~~~~l~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~~~a~~~la~~~-~~~g~~ 796 (929)
.-+..|.|..+..-|++.-|.+.+.+-.+.++.+.+..+=.-. ...-++
T Consensus 133 ------------------------------~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E~k~dP 182 (297)
T COG4785 133 ------------------------------NYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNEQKLDP 182 (297)
T ss_pred ------------------------------hHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHHhhCCH
Confidence 2335667777777888888888887777764443322221111 123356
Q ss_pred HHHHHHHHHHHHHccCCHHHHHHHh-hcCCHHHHHHHHHHHHhcCC-------CCcHHHHHHHHHHHhcCCHHHHHHHHH
Q 002375 797 KAAYDEMTKLLEKAQYSASAFEKRS-EYSDREMAKNDLNMATQLDP-------LRTYPYRYRAAVLMDDQKEVEAVEELS 868 (929)
Q Consensus 797 ~~A~~~~~~al~~~p~~~~~~~~lg-~~~~~~~A~~~~~~al~l~p-------~~~~~~~~la~~~~~~g~~~eA~~~l~ 868 (929)
.+|...+.+-.+...+..+.|...+ .+|+..+ ...++++..-.. ...++++++|..+...|+.++|...|+
T Consensus 183 ~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~-e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfK 261 (297)
T COG4785 183 KQAKTNLKQRAEKSDKEQWGWNIVEFYLGKISE-ETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFK 261 (297)
T ss_pred HHHHHHHHHHHHhccHhhhhHHHHHHHHhhccH-HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 6776665544444444444444433 2233211 112222222111 245789999999999999999999999
Q ss_pred HHHhcCC
Q 002375 869 KAIAFKP 875 (929)
Q Consensus 869 kal~~~p 875 (929)
-++..+-
T Consensus 262 LaiannV 268 (297)
T COG4785 262 LAVANNV 268 (297)
T ss_pred HHHHHhH
Confidence 8887653
No 143
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.72 E-value=7e-07 Score=86.27 Aligned_cols=195 Identities=15% Similarity=0.102 Sum_probs=114.9
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHH
Q 002375 550 CLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVI 629 (929)
Q Consensus 550 ~~~~~a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~d~~~al~~~ 629 (929)
.++.+|..|-..|-..-|.-.|.+++.+.|+-+ .+...+|.-+...|+++.|.+. +
T Consensus 67 l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~------~vfNyLG~Yl~~a~~fdaa~ea------------------F 122 (297)
T COG4785 67 LLFERGVLYDSLGLRALARNDFSQALAIRPDMP------EVFNYLGIYLTQAGNFDAAYEA------------------F 122 (297)
T ss_pred HHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcH------HHHHHHHHHHHhcccchHHHHH------------------h
Confidence 355666666666777777777777777777766 5556667666666676666333 3
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHH-HHHHHhhccchH
Q 002375 630 NQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSR-AEKSISIERTFE 708 (929)
Q Consensus 630 ~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~-~~~al~l~p~~~ 708 (929)
...++++|...-+..++|..++--|++.-|.+.+.+-.+.+|++|..-..+-..-. .-++.+|..- .+++...+.+.-
T Consensus 123 ds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E~-k~dP~~A~tnL~qR~~~~d~e~W 201 (297)
T COG4785 123 DSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNEQ-KLDPKQAKTNLKQRAEKSDKEQW 201 (297)
T ss_pred hhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHHh-hCCHHHHHHHHHHHHHhccHhhh
Confidence 66677777777777777777777777777777777777777777654322222222 2344555443 344444443333
Q ss_pred HHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCc----hhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC
Q 002375 709 AFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLR----KGQALNNLGSIYVECGKLDQAENCYINALDI 777 (929)
Q Consensus 709 a~~~l~~~l~~~~~~~~~~~~a~~~~~~Al~~~~~~l~----~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~ 777 (929)
.|......+.... .+ ..++.+....+.... -.++++.+|..+...|+.++|...|+-++..
T Consensus 202 G~~iV~~yLgkiS-----~e---~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 202 GWNIVEFYLGKIS-----EE---TLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred hHHHHHHHHhhcc-----HH---HHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 3344444443332 00 012222221111111 1367888888888888888888888877765
No 144
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.72 E-value=4.2e-08 Score=101.21 Aligned_cols=144 Identities=17% Similarity=0.158 Sum_probs=115.3
Q ss_pred EEEEEcCeEEEehhHHHhccCHHHHHHhcCCCCcCCCC--eeEecCCCCCHHHHHHHhhhhccCCCCCCCHhHHHHHHHH
Q 002375 220 VTFCVRDKEISFVRNKIASLSSPFKAMLYGGFVESKRK--TIDFSHDGVSVEGLRAVEVYTRTSRVDLFCPGIVLELLSF 297 (929)
Q Consensus 220 v~~~v~~~~~~~hr~iLaa~S~~F~~m~~~~~~e~~~~--~i~~~~~~~~~~~~~~~l~~~yt~~~~~~~~~~~~~ll~~ 297 (929)
|.+-+++ +.|||++++ .|.+||+.||.|+|.|+.-+ ...++-+..+..+.+.+++|+|+++.+ +..+...++|-+
T Consensus 295 iql~~~~-RyP~hla~i-~R~eyfk~mf~g~f~e~s~n~~~p~lslp~~~~~vveI~lr~lY~d~td-i~~~~A~dvll~ 371 (516)
T KOG0511|consen 295 IQLPEED-RYPAHLARI-LRVEYFKSMFVGDFIESSVNDTRPGLSLPSLADVVVEIDLRNLYCDQTD-IIFDVASDVLLF 371 (516)
T ss_pred ccccccc-cccHHHHHH-HHHHHHHHHhccchhhhcCCccccccccchHHHHHHHHHHHHhhccccc-chHHHHhhHHHH
Confidence 4444433 499999999 67889999999999996533 222233667788999999999999999 999999999999
Q ss_pred hchhChH--h-HHHHHHHHHHhhcCC--hhhHHHHHHHHHhhChHHHHHHHHHHHhhhhhhhcCcchhhhhhcc
Q 002375 298 ANRFCCE--E-MKSACDAHLASLVGD--IEDALILIDYGLEERATLLVASCLQVLLRELPSSLYNPKVMKIFCS 366 (929)
Q Consensus 298 A~~~~~~--~-l~~~C~~~l~~~~~~--~~n~~~~~~~a~~~~~~~L~~~c~~~i~~~~~~~~~~~~f~~L~~~ 366 (929)
|+++.++ + ||.+-..-+.+..-- .-|++.|+.++-..+...|...+..|+.+|+...+..|++...+-.
T Consensus 372 ad~lal~~dr~Lkt~as~~itq~~e~id~y~V~dIl~~~wd~~~~rlEqfa~~~~a~hl~~l~~dPe~~~~~~~ 445 (516)
T KOG0511|consen 372 ADKLALADDRLLKTAASAEITQWLELIDMYGVLDILEYCWDLVACRLEQFAETHEARHLLLLLPDPEGDSSLRT 445 (516)
T ss_pred hhHhhhhhhhhhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhcCCchhhHHHHh
Confidence 9999776 3 666655555443321 5679999999999999999999999999999999999998766443
No 145
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.68 E-value=5.8e-08 Score=80.01 Aligned_cols=66 Identities=27% Similarity=0.336 Sum_probs=61.5
Q ss_pred CcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHH-HHHHHHHHcC-CHHHHHHHHHHHhccCC
Q 002375 843 RTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLH-LRAAFYESIG-DLTSAIRDSQAALCLDP 908 (929)
Q Consensus 843 ~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~-~la~~~~~~g-~~~~A~~~~~~al~l~P 908 (929)
++..|..+|.+++..|++++|+..|+++++++|+++..+ .+|.+|..+| ++++|++.|+++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 577899999999999999999999999999999997666 7899999999 79999999999999998
No 146
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.66 E-value=2.8e-07 Score=102.21 Aligned_cols=108 Identities=20% Similarity=0.239 Sum_probs=85.2
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHh----hcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcC
Q 002375 783 HQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS----EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQ 858 (929)
Q Consensus 783 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg----~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g 858 (929)
+...|...+..|++++|+..|+++++.+|++..+|..+| ..|++++|+..+++++.++|.++.+++.+|.++...|
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 344566677777777777777777777777777777776 4577778888888888888888888999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCchHHH-HHHHHHHHc
Q 002375 859 KEVEAVEELSKAIAFKPDLQMLH-LRAAFYESI 890 (929)
Q Consensus 859 ~~~eA~~~l~kal~~~p~~~~~~-~la~~~~~~ 890 (929)
++++|+..|+++++++|+++.+. .++.+...+
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999987666 446554444
No 147
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.66 E-value=2.1e-06 Score=87.40 Aligned_cols=188 Identities=20% Similarity=0.155 Sum_probs=118.7
Q ss_pred ChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCch---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHH
Q 002375 639 KSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE---HERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAY 715 (929)
Q Consensus 639 ~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~---~~~~~~lg~~~~~~g~~~eA~~~~~~al~l~p~~~a~~~l~~ 715 (929)
.+..++..|..++..|++.+|+..|++++...|.. +.+.+.+|.+++..|++++|+..+++.++..|++
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~-------- 75 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNS-------- 75 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT---------
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC--------
Confidence 35567777777777777777777777777777775 4567777777777777777777777777777765
Q ss_pred HHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhCC
Q 002375 716 ILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIKHTRAHQGLARVYYLKNE 795 (929)
Q Consensus 716 ~l~~~~~~~~~~~~a~~~~~~Al~~~~~~l~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~~~a~~~la~~~~~~g~ 795 (929)
...+.+++.+|.++..... ..+ ......+.
T Consensus 76 -----------------------------~~~~~A~Y~~g~~~~~~~~---------~~~------------~~~~D~~~ 105 (203)
T PF13525_consen 76 -----------------------------PKADYALYMLGLSYYKQIP---------GIL------------RSDRDQTS 105 (203)
T ss_dssp -----------------------------TTHHHHHHHHHHHHHHHHH---------HHH-------------TT---HH
T ss_pred -----------------------------cchhhHHHHHHHHHHHhCc---------cch------------hcccChHH
Confidence 1114555555554443310 000 11223344
Q ss_pred HHHHHHHHHHHHHHccCCHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 002375 796 LKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKP 875 (929)
Q Consensus 796 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p 875 (929)
..+|+..++..+...|++..+-. |...+..+- .....--+..|..|.+.|.|..|+..++.+++..|
T Consensus 106 ~~~A~~~~~~li~~yP~S~y~~~----------A~~~l~~l~---~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp 172 (203)
T PF13525_consen 106 TRKAIEEFEELIKRYPNSEYAEE----------AKKRLAELR---NRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYP 172 (203)
T ss_dssp HHHHHHHHHHHHHH-TTSTTHHH----------HHHHHHHHH---HHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHCcCchHHHH----------HHHHHHHHH---HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC
Confidence 66899999999999999866522 222111111 11223345689999999999999999999999999
Q ss_pred CchH----HHHHHHHHHHcCCHHHHH
Q 002375 876 DLQM----LHLRAAFYESIGDLTSAI 897 (929)
Q Consensus 876 ~~~~----~~~la~~~~~~g~~~~A~ 897 (929)
+.+. +..++..|.++|..+.|.
T Consensus 173 ~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 173 DTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp TSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CCchHHHHHHHHHHHHHHhCChHHHH
Confidence 9853 347799999999998554
No 148
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.66 E-value=2.7e-06 Score=88.74 Aligned_cols=161 Identities=14% Similarity=0.049 Sum_probs=105.2
Q ss_pred HHHHHHHHHHhcCCCChHHH---HHHHHHHHHhCCHHHHHHHHHHHhcccC----CHhHHHHHHHHHHHhc---------
Q 002375 499 EKIVDLNYASELDPTLSFPY---KYRAVAKMEEGQIRAAISEIDRIIVFKL----SVDCLELRAWLFIAAD--------- 562 (929)
Q Consensus 499 ~Ai~~~~~al~l~P~~~~a~---~~~a~~~~~~g~~~~A~~~~~~al~~~~----~~~~~~~~a~~~~~~g--------- 562 (929)
+|+..|++.+...|..+.+. +.+|.++++.+++++|+..+++.++..| .+.+++.+|.++...+
T Consensus 50 ~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~ 129 (243)
T PRK10866 50 QAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSALQGFFG 129 (243)
T ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhhhhccC
Confidence 67777777777777665443 6667777777777777777777776666 2334666665543332
Q ss_pred ---------cHHHHHHHHHHHHhhcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHH
Q 002375 563 ---------DYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQML 633 (929)
Q Consensus 563 ---------~~~eA~~~~~~al~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~d~~~al~~~~~al 633 (929)
...+|+..|++.++..|+..... .+...+..+...
T Consensus 130 ~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~---~A~~rl~~l~~~--------------------------------- 173 (243)
T PRK10866 130 VDRSDRDPQHARAAFRDFSKLVRGYPNSQYTT---DATKRLVFLKDR--------------------------------- 173 (243)
T ss_pred CCccccCHHHHHHHHHHHHHHHHHCcCChhHH---HHHHHHHHHHHH---------------------------------
Confidence 12456666777777777665110 111111111111
Q ss_pred hcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCch---HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002375 634 INDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE---HERLVYEGWILYDTGHREEALSRAEKS 700 (929)
Q Consensus 634 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~---~~~~~~lg~~~~~~g~~~eA~~~~~~a 700 (929)
-+.--+..|..|.+.|.|..|+.-++.+++..|+. .+++..++..|..+|..++|.......
T Consensus 174 -----la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 174 -----LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred -----HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 11223467888999999999999999999988875 678899999999999999998876543
No 149
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.62 E-value=3.8e-05 Score=79.92 Aligned_cols=275 Identities=18% Similarity=0.116 Sum_probs=171.0
Q ss_pred HHhhHHHHhcccHHHHHHHHHHHHhcCccc-----cHHHHHHHHHHhchHHHHHHHHHhhhcCCCcchhhhHHHHHhhhh
Q 002375 423 HQLGCVMFEREEYKDACYYFEAAADAGHIY-----SLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNLG 497 (929)
Q Consensus 423 ~~lG~~~~~~g~y~~A~~~f~~al~~~~~~-----~~a~la~~~~~~g~a~~a~~~~~~l~~~~~~~~~~~~~~~l~~~~ 497 (929)
.+-|..++...++++|+..+.+.+..-.+. ...-++.+....|.+...+..+.+.+
T Consensus 10 ~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi------------------- 70 (518)
T KOG1941|consen 10 IEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQI------------------- 70 (518)
T ss_pred HHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHH-------------------
Confidence 456778889999999999999988762211 11123344444454444444332222
Q ss_pred hHHHHHHHHHHhcCCC--ChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccC-CH-----hHHHHHHHHHHHhccHHHHHH
Q 002375 498 REKIVDLNYASELDPT--LSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SV-----DCLELRAWLFIAADDYESALR 569 (929)
Q Consensus 498 ~~Ai~~~~~al~l~P~--~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~-----~~~~~~a~~~~~~g~~~eA~~ 569 (929)
+-+.+.+.. ...++.+++..+.+..++.+++.+-...+.+.. .+ .....++..+..++.++++++
T Consensus 71 -------~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Le 143 (518)
T KOG1941|consen 71 -------DTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALE 143 (518)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHH
Confidence 222222111 135788888888888899999988887776554 22 235567888888999999999
Q ss_pred HHHHHHhhcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHH
Q 002375 570 DTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLL 649 (929)
Q Consensus 570 ~~~~al~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~d~~~al~~~~~al~~~p~~~~~~~~lg~~ 649 (929)
.|+.++....++....-. -.++..+|.+
T Consensus 144 sfe~A~~~A~~~~D~~LE----------------------------------------------------lqvcv~Lgsl 171 (518)
T KOG1941|consen 144 SFEKALRYAHNNDDAMLE----------------------------------------------------LQVCVSLGSL 171 (518)
T ss_pred HHHHHHHHhhccCCceee----------------------------------------------------eehhhhHHHH
Confidence 999998775544411111 1245566666
Q ss_pred HHHhcCHHHHHHHHHHHHhcCCc----------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Q 002375 650 LLRLNCQKAAMRCLRLARNHSSS----------EHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILAD 719 (929)
Q Consensus 650 ~~~~g~~~~A~~~l~~al~~~p~----------~~~~~~~lg~~~~~~g~~~eA~~~~~~al~l~p~~~a~~~l~~~l~~ 719 (929)
+..+.++++|.-+..+|.++... ..-+++.++..+..+|..-.|.++.+++.++.-..
T Consensus 172 f~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~------------ 239 (518)
T KOG1941|consen 172 FAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQH------------ 239 (518)
T ss_pred HHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHh------------
Confidence 66677777776666666554221 13356677888888888888888888887753222
Q ss_pred cCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC--------CChHHHHHHHHHHH
Q 002375 720 TNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI--------KHTRAHQGLARVYY 791 (929)
Q Consensus 720 ~~~~~~~~~~a~~~~~~Al~~~~~~l~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~--------~~~~a~~~la~~~~ 791 (929)
| ++|+. .....-+|.+|...|+.+.|..-|++|... ....++.+.|.+..
T Consensus 240 -G-------------dra~~--------arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~ 297 (518)
T KOG1941|consen 240 -G-------------DRALQ--------ARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLE 297 (518)
T ss_pred -C-------------ChHHH--------HHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 0 01111 234667888888899999888888888765 12245555555544
Q ss_pred HhCCHH-----HHHHHHHHHHHH
Q 002375 792 LKNELK-----AAYDEMTKLLEK 809 (929)
Q Consensus 792 ~~g~~~-----~A~~~~~~al~~ 809 (929)
...-.. .|++.-++++++
T Consensus 298 ~~r~~~k~~~Crale~n~r~lev 320 (518)
T KOG1941|consen 298 TLRLQNKICNCRALEFNTRLLEV 320 (518)
T ss_pred HHHHhhcccccchhHHHHHHHHH
Confidence 433322 255555555554
No 150
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.57 E-value=3.6e-06 Score=90.55 Aligned_cols=174 Identities=17% Similarity=0.135 Sum_probs=113.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHH
Q 002375 680 EGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYV 759 (929)
Q Consensus 680 lg~~~~~~g~~~eA~~~~~~al~l~p~~~a~~~l~~~l~~~~~~~~~~~~a~~~~~~Al~~~~~~l~~~~a~~~lg~~~~ 759 (929)
.|..|...|++++|...|.++....-.. + . .+.. +..+...+.++.
T Consensus 41 Aa~~fk~~~~~~~A~~ay~kAa~~~~~~-------------~----~------~~~A-----------a~~~~~Aa~~~k 86 (282)
T PF14938_consen 41 AANCFKLAKDWEKAAEAYEKAADCYEKL-------------G----D------KFEA-----------AKAYEEAANCYK 86 (282)
T ss_dssp HHHHHHHTT-CHHHHHHHHHHHHHHHHT-------------T-----------HHHH-----------HHHHHHHHHHHH
T ss_pred HHHHHHHHhccchhHHHHHHHHHHHHHc-------------C----C------HHHH-----------HHHHHHHHHHHH
Confidence 4667777888888888888876643322 0 0 0000 233555566655
Q ss_pred HcCCHHHHHHHHHHHHcC----CCh----HHHHHHHHHHHHh-CCHHHHHHHHHHHHHHccCCHHHHHHHhhcCCHHHHH
Q 002375 760 ECGKLDQAENCYINALDI----KHT----RAHQGLARVYYLK-NELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAK 830 (929)
Q Consensus 760 ~~g~~~eA~~~~~~al~~----~~~----~a~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~A~ 830 (929)
.. ++++|+.+|++|+.+ +.+ ..+..+|.+|... |++++|++.|+++++......... .
T Consensus 87 ~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~----------~-- 153 (282)
T PF14938_consen 87 KG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPH----------S-- 153 (282)
T ss_dssp HT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HH----------H--
T ss_pred hh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChh----------h--
Confidence 55 888888888888766 222 4667788888887 888888888888887643322111 1
Q ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCch-------HHH-HHHHHHHHcCCHHHHHHHHHH
Q 002375 831 NDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQ-------MLH-LRAAFYESIGDLTSAIRDSQA 902 (929)
Q Consensus 831 ~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~-------~~~-~la~~~~~~g~~~~A~~~~~~ 902 (929)
....+..+|.++...|+|++|++.|+++....-+.+ .++ ..+.++...||...|...+++
T Consensus 154 ------------a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~ 221 (282)
T PF14938_consen 154 ------------AAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALER 221 (282)
T ss_dssp ------------HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred ------------HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 123456778899999999999999999887543321 222 347788889999999999999
Q ss_pred HhccCCCCHH
Q 002375 903 ALCLDPNHME 912 (929)
Q Consensus 903 al~l~P~~~~ 912 (929)
....+|....
T Consensus 222 ~~~~~~~F~~ 231 (282)
T PF14938_consen 222 YCSQDPSFAS 231 (282)
T ss_dssp HGTTSTTSTT
T ss_pred HHhhCCCCCC
Confidence 9999986544
No 151
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=6.6e-07 Score=95.41 Aligned_cols=128 Identities=21% Similarity=0.210 Sum_probs=92.2
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHH
Q 002375 785 GLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAV 864 (929)
Q Consensus 785 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~ 864 (929)
..|..|++.|++..|...|++++..-+..... +.++.... .+ ....++.+++.++.++++|.+|+
T Consensus 213 e~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~--------~~ee~~~~--~~-----~k~~~~lNlA~c~lKl~~~~~Ai 277 (397)
T KOG0543|consen 213 ERGNVLFKEGKFKLAKKRYERAVSFLEYRRSF--------DEEEQKKA--EA-----LKLACHLNLAACYLKLKEYKEAI 277 (397)
T ss_pred HhhhHHHhhchHHHHHHHHHHHHHHhhccccC--------CHHHHHHH--HH-----HHHHHhhHHHHHHHhhhhHHHHH
Confidence 34666666777777777776666543221110 00000000 00 12346789999999999999999
Q ss_pred HHHHHHHhcCCCch-HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHhhhhhh
Q 002375 865 EELSKAIAFKPDLQ-MLHLRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNRARDQASHQ 927 (929)
Q Consensus 865 ~~l~kal~~~p~~~-~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~l~~~~~~~ 927 (929)
....++++.+|++. .+|.+|.++..+|+++.|+.+|++|++++|+|..+..-+.++.++..++
T Consensus 278 ~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~ 341 (397)
T KOG0543|consen 278 ESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREY 341 (397)
T ss_pred HHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHH
Confidence 99999999999987 5557799999999999999999999999999999888887777665443
No 152
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.55 E-value=1.4e-06 Score=100.53 Aligned_cols=86 Identities=22% Similarity=0.178 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHhc--CCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 002375 827 EMAKNDLNMATQL--DPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLHLRAAFYESIGDLTSAIRDSQAAL 904 (929)
Q Consensus 827 ~~A~~~~~~al~l--~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al 904 (929)
..+.....+++.+ +|..+.++..+|..+...|++++|...+++++.++|+...+..+|.++...|+.++|++.|++|+
T Consensus 401 ~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~ 480 (517)
T PRK10153 401 AALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAF 480 (517)
T ss_pred HHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4455555665553 67777888888888888999999999999999999965445577999999999999999999999
Q ss_pred ccCCCCHH
Q 002375 905 CLDPNHME 912 (929)
Q Consensus 905 ~l~P~~~~ 912 (929)
.++|.++.
T Consensus 481 ~L~P~~pt 488 (517)
T PRK10153 481 NLRPGENT 488 (517)
T ss_pred hcCCCCch
Confidence 99999885
No 153
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.54 E-value=3.1e-07 Score=74.57 Aligned_cols=64 Identities=20% Similarity=0.297 Sum_probs=59.9
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch
Q 002375 644 FRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF 707 (929)
Q Consensus 644 ~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~l~p~~ 707 (929)
+.+|..+...|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++++.+|++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 3678999999999999999999999999999999999999999999999999999999999975
No 154
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.53 E-value=9.3e-07 Score=84.36 Aligned_cols=118 Identities=24% Similarity=0.298 Sum_probs=97.6
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHH
Q 002375 783 HQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVE 862 (929)
Q Consensus 783 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~e 862 (929)
+-.-|.-++..|+|++|..-|..+++..|....- .....|.+.|.++++++.++.
T Consensus 98 lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e-------------------------~rsIly~Nraaa~iKl~k~e~ 152 (271)
T KOG4234|consen 98 LKKEGNELFKNGDYEEANSKYQEALESCPSTSTE-------------------------ERSILYSNRAAALIKLRKWES 152 (271)
T ss_pred HHHHHHHhhhcccHHHHHHHHHHHHHhCccccHH-------------------------HHHHHHhhhHHHHHHhhhHHH
Confidence 3445667778888888888888888877765331 123457788999999999999
Q ss_pred HHHHHHHHHhcCCCchHHH-HHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHhhhh
Q 002375 863 AVEELSKAIAFKPDLQMLH-LRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNRARDQAS 925 (929)
Q Consensus 863 A~~~l~kal~~~p~~~~~~-~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~l~~~~~ 925 (929)
|+..+.++++++|.+..+. .+|.+|.++..+++|+++|++.++++|...++.....|+..+..
T Consensus 153 aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~ 216 (271)
T KOG4234|consen 153 AIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLPPKIN 216 (271)
T ss_pred HHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHH
Confidence 9999999999999998766 55999999999999999999999999999999998888866554
No 155
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.52 E-value=2.1e-06 Score=84.73 Aligned_cols=77 Identities=17% Similarity=0.088 Sum_probs=67.2
Q ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc---hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch-HHHHHHHH
Q 002375 640 SFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSS---EHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAY 715 (929)
Q Consensus 640 ~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~---~~~~~~~lg~~~~~~g~~~eA~~~~~~al~l~p~~-~a~~~l~~ 715 (929)
...++.+|.++...|++++|+..|++++.+.|+ .+.++.++|.++...|++++|+..+++++.++|.. ..+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 667899999999999999999999999988766 34689999999999999999999999999999988 55554444
Q ss_pred H
Q 002375 716 I 716 (929)
Q Consensus 716 ~ 716 (929)
+
T Consensus 115 i 115 (168)
T CHL00033 115 I 115 (168)
T ss_pred H
Confidence 4
No 156
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.52 E-value=2.7e-06 Score=84.37 Aligned_cols=70 Identities=14% Similarity=0.150 Sum_probs=38.4
Q ss_pred CChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCch---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch
Q 002375 638 GKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE---HERLVYEGWILYDTGHREEALSRAEKSISIERTF 707 (929)
Q Consensus 638 ~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~---~~~~~~lg~~~~~~g~~~eA~~~~~~al~l~p~~ 707 (929)
..+.+++.+|..+...|++++|+.+|+++++..|+. ..++..+|.++...|++++|+..+++++...|++
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 105 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQ 105 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence 334455555666666666666666666655544432 3455555555555555555555555555555443
No 157
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.52 E-value=3.5e-07 Score=74.31 Aligned_cols=64 Identities=23% Similarity=0.222 Sum_probs=55.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHH-HHHHHHHHcCCHHHHHHHHHHHhccCCCCH
Q 002375 848 RYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLH-LRAAFYESIGDLTSAIRDSQAALCLDPNHM 911 (929)
Q Consensus 848 ~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~-~la~~~~~~g~~~~A~~~~~~al~l~P~~~ 911 (929)
+.+|..++..|++++|+..|+++++..|+++..+ .+|.++..+|++++|+..|+++++++|+++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 3578899999999999999999999999987555 779999999999999999999999999986
No 158
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.52 E-value=1.6e-06 Score=79.95 Aligned_cols=105 Identities=15% Similarity=0.091 Sum_probs=75.9
Q ss_pred HhHHHHHHHHHHHhccHHHHHHHHHHHHhhcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHH
Q 002375 548 VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLA 627 (929)
Q Consensus 548 ~~~~~~~a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~d~~~al~ 627 (929)
++.++..|..+...|++++|+..|++++..+|++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~--------------------------------------------- 36 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKST--------------------------------------------- 36 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcc---------------------------------------------
Confidence 34566667777777777777777777776666543
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCch---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 002375 628 VINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE---HERLVYEGWILYDTGHREEALSRAEKSISIE 704 (929)
Q Consensus 628 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~---~~~~~~lg~~~~~~g~~~eA~~~~~~al~l~ 704 (929)
..+.+++.+|.++...|++++|+..|+.++...|++ +.++..+|.++...|++++|+..+++++...
T Consensus 37 ----------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 37 ----------YAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred ----------ccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHC
Confidence 113455667777888888888888888888777664 5677788888888888888888888888877
Q ss_pred cch
Q 002375 705 RTF 707 (929)
Q Consensus 705 p~~ 707 (929)
|++
T Consensus 107 p~~ 109 (119)
T TIGR02795 107 PGS 109 (119)
T ss_pred cCC
Confidence 776
No 159
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.52 E-value=2e-06 Score=90.32 Aligned_cols=115 Identities=12% Similarity=0.050 Sum_probs=90.8
Q ss_pred HHHHHHHHHH-HHhCCHHHHHHHHHHHHHHccCCHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCC
Q 002375 781 RAHQGLARVY-YLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQK 859 (929)
Q Consensus 781 ~a~~~la~~~-~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~ 859 (929)
..++..|..+ ...|++++|+..|++.++.+|++.. .+.+++.+|.+|+..|+
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~---------------------------a~~A~y~LG~~y~~~g~ 195 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTY---------------------------QPNANYWLGQLNYNKGK 195 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcc---------------------------hHHHHHHHHHHHHHcCC
Confidence 4455555544 4456777777777777666665421 24678899999999999
Q ss_pred HHHHHHHHHHHHhcCCCch----HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHh
Q 002375 860 EVEAVEELSKAIAFKPDLQ----MLHLRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNRARD 922 (929)
Q Consensus 860 ~~eA~~~l~kal~~~p~~~----~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~l~~ 922 (929)
+++|+..|+++++..|+++ .++.+|.++..+|++++|...|+++++..|++..+.....++..
T Consensus 196 ~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~A~~rL~~ 262 (263)
T PRK10803 196 KDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQAQKRLNA 262 (263)
T ss_pred HHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHHHHHhc
Confidence 9999999999999999863 34467999999999999999999999999999999888888753
No 160
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.51 E-value=3.7e-06 Score=97.15 Aligned_cols=144 Identities=12% Similarity=0.030 Sum_probs=104.4
Q ss_pred HHHHHHHHHHh---ccHHHHHHHHHHHHhhcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHH
Q 002375 551 LELRAWLFIAA---DDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLA 627 (929)
Q Consensus 551 ~~~~a~~~~~~---g~~~eA~~~~~~al~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~d~~~al~ 627 (929)
++.+|.-++.. ++...|+..|+++++++|++. .++..++.++.....+...... +......
T Consensus 342 ~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a------~a~A~la~~~~~~~~~~~~~~~----------~l~~a~~ 405 (517)
T PRK10153 342 LFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFT------YAQAEKALADIVRHSQQPLDEK----------QLAALST 405 (517)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcH------HHHHHHHHHHHHHHhcCCccHH----------HHHHHHH
Confidence 44555555443 347788888899999999888 5555555555333222210000 0000122
Q ss_pred HHHHHHh--cCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc
Q 002375 628 VINQMLI--NDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIER 705 (929)
Q Consensus 628 ~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~l~p 705 (929)
...+++. .+|.++.++..+|..+...|++++|...+++|+.++|+ ..+|..+|.++...|++++|+..|++|+.++|
T Consensus 406 ~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P 484 (517)
T PRK10153 406 ELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNLRP 484 (517)
T ss_pred HHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 2345444 37778889999999999999999999999999999995 78999999999999999999999999999999
Q ss_pred chHHHH
Q 002375 706 TFEAFF 711 (929)
Q Consensus 706 ~~~a~~ 711 (929)
.++.++
T Consensus 485 ~~pt~~ 490 (517)
T PRK10153 485 GENTLY 490 (517)
T ss_pred CCchHH
Confidence 984444
No 161
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=2.8e-06 Score=87.79 Aligned_cols=122 Identities=20% Similarity=0.052 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHh----hcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcC---CHHHHHHHHHHH
Q 002375 798 AAYDEMTKLLEKAQYSASAFEKRS----EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQ---KEVEAVEELSKA 870 (929)
Q Consensus 798 ~A~~~~~~al~~~p~~~~~~~~lg----~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g---~~~eA~~~l~ka 870 (929)
.-+.-++..+..+|++...|..+| ..|++..|...|.+|+++.|++++.+..+|.+++.+. .-.+|...++++
T Consensus 140 ~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~a 219 (287)
T COG4235 140 ALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQA 219 (287)
T ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 334445555566666666666666 3466666666666666666666666666666555433 345666666666
Q ss_pred HhcCCCchHHH-HHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHH
Q 002375 871 IAFKPDLQMLH-LRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNR 919 (929)
Q Consensus 871 l~~~p~~~~~~-~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~ 919 (929)
+..+|++.... ++|..++..|++.+|...++..+...|.+..-....++
T Consensus 220 l~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~ 269 (287)
T COG4235 220 LALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIER 269 (287)
T ss_pred HhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence 66666665333 55666666666666666666666666555544444333
No 162
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.50 E-value=1e-07 Score=97.74 Aligned_cols=232 Identities=12% Similarity=-0.009 Sum_probs=162.4
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHHHHHhcCC
Q 002375 643 RFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNL 722 (929)
Q Consensus 643 ~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~l~p~~~a~~~l~~~l~~~~~ 722 (929)
.-..|.-|+.+|+|++|+.+|.+++..+|.++..+.+.+.+|+++.++..|...++.|+.++..+
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y--------------- 164 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLY--------------- 164 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHH---------------
Confidence 45789999999999999999999999999999999999999999999999999999999877644
Q ss_pred CCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhCCHHH----
Q 002375 723 DPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIKHTRAHQGLARVYYLKNELKA---- 798 (929)
Q Consensus 723 ~~~~~~~a~~~~~~Al~~~~~~l~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~~~a~~~la~~~~~~g~~~~---- 798 (929)
..+|...|.+...+|+..+|.+.++.++++.+.. ..|-..+.......+
T Consensus 165 -------------------------~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~--~ELkK~~a~i~Sl~E~~I~ 217 (536)
T KOG4648|consen 165 -------------------------VKAYSRRMQARESLGNNMEAKKDCETVLALEPKN--IELKKSLARINSLRERKIA 217 (536)
T ss_pred -------------------------HHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCccc--HHHHHHHHHhcchHhhhHH
Confidence 2346677777888889999999999999885431 111112222222111
Q ss_pred ---------HHHHHHHHHH-HccCCHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHH
Q 002375 799 ---------AYDEMTKLLE-KAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELS 868 (929)
Q Consensus 799 ---------A~~~~~~al~-~~p~~~~~~~~lg~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~ 868 (929)
|.+-..+++. ..+.+ . ....|.++.++.++...+..+..+.....+ +..+.+..+++.|+....
T Consensus 218 ~KsT~G~~~A~Q~~~Q~l~~K~~G~--~---Fsk~~~~~~~i~~~~~~~A~~~~~~~L~~~-~~~~~KI~~~~~~~~~~~ 291 (536)
T KOG4648|consen 218 TKSTPGFTPARQGMIQILPIKKPGY--K---FSKKAMRSVPVVDVVSPRATIDDSNQLRIS-DEDIDKIFNSNCGIIEEV 291 (536)
T ss_pred hhcCCCCCccccchhhhccccCcch--h---hhhhhccccceeEeeccccccCccccCccc-HHHHHHHhhcchhHHHHH
Confidence 1111111110 01100 0 002344555666665555444444333333 667788889999999999
Q ss_pred HHHhcCCCchHHH-HHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHh
Q 002375 869 KAIAFKPDLQMLH-LRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNRARD 922 (929)
Q Consensus 869 kal~~~p~~~~~~-~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~l~~ 922 (929)
+++..+|.....+ ..+.+---.|...+|...++.++.+.|.+..+..-..++..
T Consensus 292 ~~~~~~~s~~~~~s~~~~A~T~~~~~~E~K~~~~T~~~~~P~~~~~~~~~sr~~~ 346 (536)
T KOG4648|consen 292 KKTNPKPTPMPDTSGPPKAETIAKTSKEVKPTKQTAVKVAPAVETPKETETRKDT 346 (536)
T ss_pred HhcCCCCCcCcccCCCchhHHHHhhhhhcCcchhheeeeccccccchhhhhhhcc
Confidence 9998888775444 34666666788899999999999999999888777766653
No 163
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.50 E-value=3.1e-06 Score=91.04 Aligned_cols=211 Identities=16% Similarity=0.099 Sum_probs=140.4
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-----c-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHH
Q 002375 641 FLRFRQSLLLLRLNCQKAAMRCLRLARNHSS-----S-EHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKA 714 (929)
Q Consensus 641 ~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p-----~-~~~~~~~lg~~~~~~g~~~eA~~~~~~al~l~p~~~a~~~l~ 714 (929)
..+...|..|...|++++|...|.++....- . -...+...+.++.+. ++++|+.+|++++.+.-..
T Consensus 36 ~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~------- 107 (282)
T PF14938_consen 36 DLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREA------- 107 (282)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhc-------
Confidence 4566778899999999999999999865431 1 134455556666555 8888888888888653322
Q ss_pred HHHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHc-CCHHHHHHHHHHHHcC----CC----hHHHHH
Q 002375 715 YILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVEC-GKLDQAENCYINALDI----KH----TRAHQG 785 (929)
Q Consensus 715 ~~l~~~~~~~~~~~~a~~~~~~Al~~~~~~l~~~~a~~~lg~~~~~~-g~~~eA~~~~~~al~~----~~----~~a~~~ 785 (929)
| .+..| +..+..+|.+|... |++++|+++|++|+++ +. ...+..
T Consensus 108 ------G-----------~~~~a----------A~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~ 160 (282)
T PF14938_consen 108 ------G-----------RFSQA----------AKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLK 160 (282)
T ss_dssp ------T------------HHHH----------HHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred ------C-----------cHHHH----------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHH
Confidence 2 22222 35688899999998 9999999999999988 22 246788
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHH
Q 002375 786 LARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVE 865 (929)
Q Consensus 786 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~ 865 (929)
+|.++...|++++|++.|++.....-++..... .....+...+.+++..|++..|..
T Consensus 161 ~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~-----------------------~~~~~~l~a~l~~L~~~D~v~A~~ 217 (282)
T PF14938_consen 161 AADLYARLGRYEEAIEIYEEVAKKCLENNLLKY-----------------------SAKEYFLKAILCHLAMGDYVAARK 217 (282)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGH-----------------------HHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHhhcccccch-----------------------hHHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999999999988765322111000 011234556778888999999999
Q ss_pred HHHHHHhcCCCch---HHH---HHHHHHH--HcCCHHHHHHHHHHHhccCCC
Q 002375 866 ELSKAIAFKPDLQ---MLH---LRAAFYE--SIGDLTSAIRDSQAALCLDPN 909 (929)
Q Consensus 866 ~l~kal~~~p~~~---~~~---~la~~~~--~~g~~~~A~~~~~~al~l~P~ 909 (929)
.+++....+|... ... .+-.++. ....+.+|+..|.+.-++||=
T Consensus 218 ~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld~w 269 (282)
T PF14938_consen 218 ALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRLDNW 269 (282)
T ss_dssp HHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS---HH
T ss_pred HHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCccHHH
Confidence 9999999888552 222 2233333 245688888888888777763
No 164
>PRK11906 transcriptional regulator; Provisional
Probab=98.49 E-value=4e-06 Score=91.85 Aligned_cols=155 Identities=10% Similarity=0.024 Sum_probs=119.2
Q ss_pred HHHHHHHHHH---hcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccCCHhHHHHHHHHHHHhccHHHHHHHHHHHH
Q 002375 499 EKIVDLNYAS---ELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALL 575 (929)
Q Consensus 499 ~Ai~~~~~al---~l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~al 575 (929)
.|+..|.+|+ +++|..+.+|-.+|.+++..- ..|+.- ...+..+|.+..++++
T Consensus 276 ~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~-----------------------~~g~~~-~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 276 RAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLA-----------------------LHGKSE-LELAAQKALELLDYVS 331 (458)
T ss_pred HHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHH-----------------------HhcCCC-chHHHHHHHHHHHHHH
Confidence 7888999999 999999999999888886431 011211 2334567888888899
Q ss_pred hhcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHHHHhcC
Q 002375 576 ALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNC 655 (929)
Q Consensus 576 ~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~d~~~al~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 655 (929)
+++|.|+ .++..+|.+....++++.|..++ ++++.++|+.+.+|+..|.+....|+
T Consensus 332 eld~~Da------~a~~~~g~~~~~~~~~~~a~~~f------------------~rA~~L~Pn~A~~~~~~~~~~~~~G~ 387 (458)
T PRK11906 332 DITTVDG------KILAIMGLITGLSGQAKVSHILF------------------EQAKIHSTDIASLYYYRALVHFHNEK 387 (458)
T ss_pred hcCCCCH------HHHHHHHHHHHhhcchhhHHHHH------------------HHHhhcCCccHHHHHHHHHHHHHcCC
Confidence 9999988 77778888888888888886666 88888888888899999998888899
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHH-HHHcCCHHHHHHHHHHHH
Q 002375 656 QKAAMRCLRLARNHSSSEHERLVYEGWI-LYDTGHREEALSRAEKSI 701 (929)
Q Consensus 656 ~~~A~~~l~~al~~~p~~~~~~~~lg~~-~~~~g~~~eA~~~~~~al 701 (929)
.++|.+.++++++++|....+-...-++ .+-....++|+..|-+-.
T Consensus 388 ~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (458)
T PRK11906 388 IEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNPLKNNIKLYYKET 434 (458)
T ss_pred HHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCchhhhHHHHhhcc
Confidence 9999999999999988876655544444 455566788887775543
No 165
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.48 E-value=2.8e-06 Score=84.19 Aligned_cols=115 Identities=20% Similarity=0.183 Sum_probs=88.2
Q ss_pred CchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch----HHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCc
Q 002375 671 SSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF----EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLR 746 (929)
Q Consensus 671 p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~l~p~~----~a~~~l~~~l~~~~~~~~~~~~a~~~~~~Al~~~~~~l~ 746 (929)
+.....++.+|..+...|++++|+..|+++++..|+. ..+..+|.++...+ ++++|+..+.+++.
T Consensus 32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~al~ 100 (172)
T PRK02603 32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNG-----------EHDKALEYYHQALE 100 (172)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHH
Confidence 3456778999999999999999999999999887653 57888888888887 66777776666644
Q ss_pred ----hhHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCH
Q 002375 747 ----KGQALNNLGSIYVECGKLDQAENCYINALDIKHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSA 814 (929)
Q Consensus 747 ----~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 814 (929)
....+..+|.++...|+...+...++.++. .+++|.+.+++++..+|++.
T Consensus 101 ~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~------------------~~~~A~~~~~~a~~~~p~~~ 154 (172)
T PRK02603 101 LNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEA------------------LFDKAAEYWKQAIRLAPNNY 154 (172)
T ss_pred hCcccHHHHHHHHHHHHHcCChHhHhhCHHHHHH------------------HHHHHHHHHHHHHhhCchhH
Confidence 247788889999988887777666555432 36677888888888888764
No 166
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.46 E-value=4.5e-05 Score=91.77 Aligned_cols=215 Identities=14% Similarity=0.055 Sum_probs=150.8
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-ccch-HHHHHHHHHHHhcCCCCCChHHHHHHHHH
Q 002375 659 AMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISI-ERTF-EAFFLKAYILADTNLDPESSTYVIQLLEE 736 (929)
Q Consensus 659 A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~l-~p~~-~a~~~l~~~l~~~~~~~~~~~~a~~~~~~ 736 (929)
..+.|++.+..+|+..-.|..+-.-+.+.++.++|.+.+++|+.. ++.- +-..++-.+|.+....-+.......-+++
T Consensus 1443 saeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeR 1522 (1710)
T KOG1070|consen 1443 SAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFER 1522 (1710)
T ss_pred CHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHH
Confidence 344555555556666555655555555666666666666666542 2222 11122222222221111222222222333
Q ss_pred HhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC--CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccC--
Q 002375 737 ALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI--KHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQY-- 812 (929)
Q Consensus 737 Al~~~~~~l~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~--~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~-- 812 (929)
|-++ ..+-..+..|..+|...+++++|.++|+..++. +....|..+|..++.+++-++|...+.+|+...|.
T Consensus 1523 Acqy----cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~e 1598 (1710)
T KOG1070|consen 1523 ACQY----CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQE 1598 (1710)
T ss_pred HHHh----cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhh
Confidence 3221 123356888999999999999999999999988 46789999999999999999999999999999998
Q ss_pred CHHHHHHHh----hcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc
Q 002375 813 SASAFEKRS----EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDL 877 (929)
Q Consensus 813 ~~~~~~~lg----~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~ 877 (929)
+.......+ ..|+.+.+...|+..+.-.|...+.|.-+...-++.|+.+.+...|++++.+.-..
T Consensus 1599 Hv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1599 HVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred hHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 444444444 67999999999999999999999999999999999999999999999999876433
No 167
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.46 E-value=8.9e-05 Score=80.09 Aligned_cols=361 Identities=12% Similarity=0.037 Sum_probs=203.2
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHh-cccC----CHhH-----HHHHHHHHHHhccHHHHH
Q 002375 499 EKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRII-VFKL----SVDC-----LELRAWLFIAADDYESAL 568 (929)
Q Consensus 499 ~Ai~~~~~al~l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al-~~~~----~~~~-----~~~~a~~~~~~g~~~eA~ 568 (929)
.+....+.+.....+.+.+...++..++..|++..|.+.+...- ...+ .|++ +.++|.+++++|.|..+.
T Consensus 224 ~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~ 303 (696)
T KOG2471|consen 224 LAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASS 303 (696)
T ss_pred HHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHH
Confidence 34444455555666888899999999999999999998887652 1111 3332 578899999999999999
Q ss_pred HHHHHHHhhcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhc-CCCChHHHHHHH
Q 002375 569 RDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLIN-DPGKSFLRFRQS 647 (929)
Q Consensus 569 ~~~~~al~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~d~~~al~~~~~al~~-~p~~~~~~~~lg 647 (929)
.+|.++++ +. -..+.. | +..+ +.... ......+.++.|
T Consensus 304 ~~F~kAL~----N~-----------c~qL~~--g-~~~~-----------------------~~~tls~nks~eilYNcG 342 (696)
T KOG2471|consen 304 VLFLKALR----NS-----------CSQLRN--G-LKPA-----------------------KTFTLSQNKSMEILYNCG 342 (696)
T ss_pred HHHHHHHH----HH-----------HHHHhc--c-CCCC-----------------------cceehhcccchhhHHhhh
Confidence 99999986 11 000000 0 0000 00000 123456789999
Q ss_pred HHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCC---H----------------------------------
Q 002375 648 LLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGH---R---------------------------------- 690 (929)
Q Consensus 648 ~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~---~---------------------------------- 690 (929)
..|...|++-.|.++|.++......+|..|..++.+.+...+ .
T Consensus 343 ~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima~~~~l~ee~~~s~s~~~i~~~vig~g~rr~~m~~~nt~~~ 422 (696)
T KOG2471|consen 343 LLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMALQKGLLEEGNSSLSRSEIRVHVIGKGNRRQLMIEENTYVE 422 (696)
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhhhccCCcccccceeeeecccchhheeecccceec
Confidence 999999999999999999999999999999999988764321 1
Q ss_pred ------------HHHHHHHHHHHhhccch---HHHHHHHHHHHhcCCCCC----ChHHHHHHH--HHHhhchhcc-----
Q 002375 691 ------------EEALSRAEKSISIERTF---EAFFLKAYILADTNLDPE----SSTYVIQLL--EEALRCPSDG----- 744 (929)
Q Consensus 691 ------------~eA~~~~~~al~l~p~~---~a~~~l~~~l~~~~~~~~----~~~~a~~~~--~~Al~~~~~~----- 744 (929)
+-|.-+++.++-+-|.. ......+..-.+.+..++ +........ +.-+......
T Consensus 423 ~~qS~~~p~~slefA~vCLrnal~Ll~e~q~~~~~~~~a~ns~~~g~~~e~~e~~~t~~Sk~h~gd~~~~~p~ssp~~~e 502 (696)
T KOG2471|consen 423 LAQSNQLPKLSLEFARVCLRNALYLLNEKQDLGSILSVAMNSTKEGSSSEHEEGNTTTDSKEHKGDMSQEIPQSSPSAFE 502 (696)
T ss_pred cccccCCCccccHHHHHHHHhhhhcCchhhcchhhhhhhccccccCCCCcCCCCCCCcchhcCCCCCCccCCCCCcchHH
Confidence 12223333333222111 111111111111110000 000000000 0000000000
Q ss_pred -Cc--hhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC-CChHHHHHHHHHH-----HHhCCHHHHHHHHHHHHHHccCCHH
Q 002375 745 -LR--KGQALNNLGSIYVECGKLDQAENCYINALDI-KHTRAHQGLARVY-----YLKNELKAAYDEMTKLLEKAQYSAS 815 (929)
Q Consensus 745 -l~--~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~-~~~~a~~~la~~~-----~~~g~~~~A~~~~~~al~~~p~~~~ 815 (929)
++ ....+.+.+.+-...|+.-.|+..-++.++. +-..++..+|.+| ..+++..+|...+.--.--+.+...
T Consensus 503 ~leNm~~ai~A~~ayV~L~Lgd~i~AL~~a~kLLq~~~lS~~~kfLGHiYAaEAL~lldr~seA~~HL~p~~~~~~~f~~ 582 (696)
T KOG2471|consen 503 DLENMRQAIFANMAYVELELGDPIKALSAATKLLQLADLSKIYKFLGHIYAAEALCLLDRPSEAGAHLSPYLLGQDDFKL 582 (696)
T ss_pred HHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHcCChhhhhhccChhhcCCccccc
Confidence 00 0245677788888999999999999998888 4445555555554 4455566665554331100000000
Q ss_pred HHHHHhhcCCHHHHH---HHHHHHHhcCC---------CCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--chHHH
Q 002375 816 AFEKRSEYSDREMAK---NDLNMATQLDP---------LRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPD--LQMLH 881 (929)
Q Consensus 816 ~~~~lg~~~~~~~A~---~~~~~al~l~p---------~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~--~~~~~ 881 (929)
.+ ...|++.-. +.++-....+| .....++++|.++.-+|++++|...+..+..+-+. ++.+.
T Consensus 583 ~~----n~~Df~~~~~~~e~l~~s~~r~~q~~~~sv~~Ar~v~~~nLa~a~alq~~~dqAk~ll~~aatl~hs~v~~~A~ 658 (696)
T KOG2471|consen 583 PY----NQEDFDQWWKHTETLDPSTGRTRQSVFLSVEEARGVLFANLAAALALQGHHDQAKSLLTHAATLLHSLVNVQAT 658 (696)
T ss_pred cc----chhhhhhhhccccccCCcCCCCcccccCCHHHHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhhccccHHHH
Confidence 00 000111000 00000000111 12345789999999999999999999999988773 34444
Q ss_pred HH-HHHHHHcCCHHHHHHHHHHHh
Q 002375 882 LR-AAFYESIGDLTSAIRDSQAAL 904 (929)
Q Consensus 882 ~l-a~~~~~~g~~~~A~~~~~~al 904 (929)
.+ -.+-..+|+...|+..+++.-
T Consensus 659 ~lavyidL~~G~~q~al~~lk~~~ 682 (696)
T KOG2471|consen 659 VLAVYIDLMLGRSQDALARLKQCT 682 (696)
T ss_pred HHHHHHHHhcCCCcchHHHHHhcc
Confidence 33 444556899999999888763
No 168
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=3.3e-06 Score=87.22 Aligned_cols=120 Identities=14% Similarity=0.033 Sum_probs=106.1
Q ss_pred HHHHHHHHHHHHhhcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHH
Q 002375 564 YESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLR 643 (929)
Q Consensus 564 ~~eA~~~~~~al~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~d~~~al~~~~~al~~~p~~~~~~ 643 (929)
.+..+.-++.-+..+|++. +.+.++|.+|...++++.| +..|.+++++.|+++..+
T Consensus 138 ~~~l~a~Le~~L~~nP~d~------egW~~Lg~~ym~~~~~~~A------------------~~AY~~A~rL~g~n~~~~ 193 (287)
T COG4235 138 MEALIARLETHLQQNPGDA------EGWDLLGRAYMALGRASDA------------------LLAYRNALRLAGDNPEIL 193 (287)
T ss_pred HHHHHHHHHHHHHhCCCCc------hhHHHHHHHHHHhcchhHH------------------HHHHHHHHHhCCCCHHHH
Confidence 4556667788888899999 8888999999999999888 556699999999999999
Q ss_pred HHHHHHHHHhc---CHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch
Q 002375 644 FRQSLLLLRLN---CQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF 707 (929)
Q Consensus 644 ~~lg~~~~~~g---~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~l~p~~ 707 (929)
..+|.++..+. ...++...+++++..+|.+..+.+.+|..+++.|+|.+|+..++..++..|.+
T Consensus 194 ~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~ 260 (287)
T COG4235 194 LGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPAD 260 (287)
T ss_pred HHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCC
Confidence 99999887764 35789999999999999999999999999999999999999999999998877
No 169
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.44 E-value=9.7e-06 Score=77.80 Aligned_cols=124 Identities=21% Similarity=0.161 Sum_probs=91.5
Q ss_pred HHHHHHhcCHHHHHHHHHHHHhcCCch---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHHHHHhcCCC
Q 002375 647 SLLLLRLNCQKAAMRCLRLARNHSSSE---HERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLD 723 (929)
Q Consensus 647 g~~~~~~g~~~~A~~~l~~al~~~p~~---~~~~~~lg~~~~~~g~~~eA~~~~~~al~l~p~~~a~~~l~~~l~~~~~~ 723 (929)
.......++...+...++.....+|+. ..+.+.+|.+++..|++++|...|+.++...|+..
T Consensus 18 ~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~--------------- 82 (145)
T PF09976_consen 18 ALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPE--------------- 82 (145)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHH---------------
Confidence 333445788888888888888888887 55677788999999999999999999888665440
Q ss_pred CCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC-CChHHHHHHHHHHHHhCCHHHHHHH
Q 002375 724 PESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI-KHTRAHQGLARVYYLKNELKAAYDE 802 (929)
Q Consensus 724 ~~~~~~a~~~~~~Al~~~~~~l~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~-~~~~a~~~la~~~~~~g~~~~A~~~ 802 (929)
+ ...+...++.++...|++++|+..++..... -.+.++..+|.++...|++++|+..
T Consensus 83 ----------l------------~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~ 140 (145)
T PF09976_consen 83 ----------L------------KPLARLRLARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAA 140 (145)
T ss_pred ----------H------------HHHHHHHHHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 0 0234667788888888888888888663322 2335677788888888888888888
Q ss_pred HHHHH
Q 002375 803 MTKLL 807 (929)
Q Consensus 803 ~~~al 807 (929)
|++++
T Consensus 141 y~~Al 145 (145)
T PF09976_consen 141 YQKAL 145 (145)
T ss_pred HHHhC
Confidence 87763
No 170
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.43 E-value=2.1e-06 Score=74.52 Aligned_cols=99 Identities=17% Similarity=0.166 Sum_probs=88.7
Q ss_pred HHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 002375 590 GDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNH 669 (929)
Q Consensus 590 a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~d~~~al~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~ 669 (929)
++..++..+...|++++|..++ .++++..|.+..++..+|.++...+++++|+..+++++..
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 63 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYY------------------EKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALEL 63 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHH------------------HHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3456777888888888886665 8999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccc
Q 002375 670 SSSEHERLVYEGWILYDTGHREEALSRAEKSISIERT 706 (929)
Q Consensus 670 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~l~p~ 706 (929)
.|.+...+..+|.++...|++++|...+++++...|+
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 64 DPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100 (100)
T ss_pred CCcchhHHHHHHHHHHHHHhHHHHHHHHHHHHccCCC
Confidence 9999999999999999999999999999999987763
No 171
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.43 E-value=6.2e-06 Score=79.14 Aligned_cols=80 Identities=24% Similarity=0.177 Sum_probs=56.3
Q ss_pred CCHHHHHHHHHHHHhcCCCC---cHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHH-HHHHHHHHcCCHHHHHHH
Q 002375 824 SDREMAKNDLNMATQLDPLR---TYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLH-LRAAFYESIGDLTSAIRD 899 (929)
Q Consensus 824 ~~~~~A~~~~~~al~l~p~~---~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~-~la~~~~~~g~~~~A~~~ 899 (929)
|++++|+..|+.++...|+. ..+...+|.+++..|++++|+..++.. .-.+-.+... .+|.+|...|++++|+..
T Consensus 62 g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~ 140 (145)
T PF09976_consen 62 GDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAA 140 (145)
T ss_pred CCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 44444444444444443322 346778999999999999999999763 2222223333 679999999999999999
Q ss_pred HHHHh
Q 002375 900 SQAAL 904 (929)
Q Consensus 900 ~~~al 904 (929)
|++|+
T Consensus 141 y~~Al 145 (145)
T PF09976_consen 141 YQKAL 145 (145)
T ss_pred HHHhC
Confidence 99985
No 172
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.42 E-value=0.00029 Score=72.31 Aligned_cols=217 Identities=26% Similarity=0.227 Sum_probs=168.4
Q ss_pred hcCHHHHHHHHHHHHhcCCc--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hccchHHHHHHHHHHHhcCCCCCChH
Q 002375 653 LNCQKAAMRCLRLARNHSSS--EHERLVYEGWILYDTGHREEALSRAEKSIS--IERTFEAFFLKAYILADTNLDPESST 728 (929)
Q Consensus 653 ~g~~~~A~~~l~~al~~~p~--~~~~~~~lg~~~~~~g~~~eA~~~~~~al~--l~p~~~a~~~l~~~l~~~~~~~~~~~ 728 (929)
.+.+..+...+.......+. ........+..+...+++..+...+...+. ..+..
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------- 94 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNL--------------------- 94 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccch---------------------
Confidence 46777788888888887776 367788888888999999999888888775 22222
Q ss_pred HHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC--CChHHHHHHHH-HHHHhCCHHHHHHHHHH
Q 002375 729 YVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI--KHTRAHQGLAR-VYYLKNELKAAYDEMTK 805 (929)
Q Consensus 729 ~a~~~~~~Al~~~~~~l~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~--~~~~a~~~la~-~~~~~g~~~~A~~~~~~ 805 (929)
...+...|..+...+++..++..+.+++.. .+.......+. ++...|+++.|...+.+
T Consensus 95 -------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 155 (291)
T COG0457 95 -------------------AEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEK 155 (291)
T ss_pred -------------------HHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 344667777777788888888888888886 23234444455 78888999999999998
Q ss_pred HHHHccC---CHHHHHHHh----hcCCHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc
Q 002375 806 LLEKAQY---SASAFEKRS----EYSDREMAKNDLNMATQLDPL-RTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDL 877 (929)
Q Consensus 806 al~~~p~---~~~~~~~lg----~~~~~~~A~~~~~~al~l~p~-~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~ 877 (929)
++...|. ....+...+ ..++++.|+..+.+++...+. ....+..++..+...+++++|+..+.+++...|..
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 235 (291)
T COG0457 156 ALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDN 235 (291)
T ss_pred HHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCccc
Confidence 8776652 333333333 357889999999999999998 68899999999999999999999999999999884
Q ss_pred -hHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 002375 878 -QMLHLRAAFYESIGDLTSAIRDSQAALCLDPN 909 (929)
Q Consensus 878 -~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~ 909 (929)
......+..+...|++++|...+.++++.+|.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 236 AEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 34446666666778899999999999999997
No 173
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.42 E-value=0.0051 Score=67.04 Aligned_cols=376 Identities=15% Similarity=0.089 Sum_probs=232.6
Q ss_pred HHHHHHHHHHHHhC--CHHHHHHHHHHHhcccCC----HhHHHHHHHHH-HHhccHHHHHHHHHHHHhhcCCchhh-hcc
Q 002375 516 FPYKYRAVAKMEEG--QIRAAISEIDRIIVFKLS----VDCLELRAWLF-IAADDYESALRDTLALLALESNYMMF-HGR 587 (929)
Q Consensus 516 ~a~~~~a~~~~~~g--~~~~A~~~~~~al~~~~~----~~~~~~~a~~~-~~~g~~~eA~~~~~~al~~~p~~~~~-~~~ 587 (929)
.++..+|..+...| +...++++++......++ ..+...+|.+. ....+.+.|...++++..+...-+.+ ..+
T Consensus 8 ~aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvK 87 (629)
T KOG2300|consen 8 EALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVK 87 (629)
T ss_pred HHHHHHHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhh
Confidence 45667788888888 899999999999888872 33455566554 55789999999999998876665544 345
Q ss_pred ccHHHHHHHHHHhhc-ccchHHHHHHhhhccccccccccHHHHHHHHhcCCCCh----HHHHHHHHHHHHhcCHHHHHHH
Q 002375 588 VSGDHLVKLLNHHVR-SWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKS----FLRFRQSLLLLRLNCQKAAMRC 662 (929)
Q Consensus 588 ~~a~~ll~~~~~~~~-~~~~A~~~l~l~~~~~~~d~~~al~~~~~al~~~p~~~----~~~~~lg~~~~~~g~~~~A~~~ 662 (929)
..+..+++.++.... .+..+...+ .++++...+.+ ...+.++.+.....++..|++.
T Consensus 88 f~a~SlLa~lh~~~~~s~~~~KalL------------------rkaielsq~~p~wsckllfQLaql~~idkD~~sA~el 149 (629)
T KOG2300|consen 88 FQAASLLAHLHHQLAQSFPPAKALL------------------RKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALEL 149 (629)
T ss_pred hHHHHHHHHHHHHhcCCCchHHHHH------------------HHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHH
Confidence 578888999987766 556665555 78888766554 3567888999999999999988
Q ss_pred HHHHHhcCCch----HHHHHHH--HHHHHHcCCHH---HHHHHHHHHHhh---ccch-----HHHHHHHHHHHhcCCCCC
Q 002375 663 LRLARNHSSSE----HERLVYE--GWILYDTGHRE---EALSRAEKSISI---ERTF-----EAFFLKAYILADTNLDPE 725 (929)
Q Consensus 663 l~~al~~~p~~----~~~~~~l--g~~~~~~g~~~---eA~~~~~~al~l---~p~~-----~a~~~l~~~l~~~~~~~~ 725 (929)
+.--.+....- ....+.+ +.++....+.. .+.....+..+. +|.. ..|..+..++....-...
T Consensus 150 Lavga~sAd~~~~~ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl~lql~yy~~~gq~r 229 (629)
T KOG2300|consen 150 LAVGAESADHICFPYLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFYLVLQLSYYLLPGQVR 229 (629)
T ss_pred HhccccccchhhhHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhcccchh
Confidence 54332221111 1122222 34444444433 344444444432 2222 122233333333222333
Q ss_pred ChHHHHHHHHHHhhchhcc--------C-ch---------h---HHHHHHHHH--HHHcCCHHHHHHHHHHHHcC-----
Q 002375 726 SSTYVIQLLEEALRCPSDG--------L-RK---------G---QALNNLGSI--YVECGKLDQAENCYINALDI----- 777 (929)
Q Consensus 726 ~~~~a~~~~~~Al~~~~~~--------l-~~---------~---~a~~~lg~~--~~~~g~~~eA~~~~~~al~~----- 777 (929)
....+++++.+.+...... + .+ . .++..+-.+ -.-.|-+++|.++-++++..
T Consensus 230 t~k~~lkQLQ~siqtist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklk 309 (629)
T KOG2300|consen 230 TVKPALKQLQDSIQTISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLK 309 (629)
T ss_pred hhHHHHHHHHHHHhccCCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcc
Confidence 3444455566555544432 0 01 0 111111111 12456678888877777755
Q ss_pred -CC--h--------HHHHHHHHHHHHhCCHHHHHHHHHHHHHHc---cC-------CHHHHHHHh----hcCCHHHHHHH
Q 002375 778 -KH--T--------RAHQGLARVYYLKNELKAAYDEMTKLLEKA---QY-------SASAFEKRS----EYSDREMAKND 832 (929)
Q Consensus 778 -~~--~--------~a~~~la~~~~~~g~~~~A~~~~~~al~~~---p~-------~~~~~~~lg----~~~~~~~A~~~ 832 (929)
.+ . ..+..++.+-.-.|++.+|++....+.+.. |. .+.+.+.+| ..+.++.|...
T Consensus 310 q~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~h 389 (629)
T KOG2300|consen 310 QADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFH 389 (629)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHH
Confidence 11 1 244566777788999999998887776543 33 123455566 34788999999
Q ss_pred HHHHHhcCCC---CcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-----------hHHHHHHHHHHHcCCHHHHHH
Q 002375 833 LNMATQLDPL---RTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDL-----------QMLHLRAAFYESIGDLTSAIR 898 (929)
Q Consensus 833 ~~~al~l~p~---~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~-----------~~~~~la~~~~~~g~~~~A~~ 898 (929)
|..|+++-.. .+..-.++|.+|...|+-+.-.+.++. +.|.+ ..++..|...+.++++.+|..
T Consensus 390 f~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~---i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~ 466 (629)
T KOG2300|consen 390 FIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDL---IGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKR 466 (629)
T ss_pred HHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHh---cCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 9999986542 233456899999998876554444433 34432 123356888889999999999
Q ss_pred HHHHHhccCCCCHHH
Q 002375 899 DSQAALCLDPNHMET 913 (929)
Q Consensus 899 ~~~~al~l~P~~~~a 913 (929)
..++.|+.. +..+.
T Consensus 467 ~l~e~Lkma-naed~ 480 (629)
T KOG2300|consen 467 FLRETLKMA-NAEDL 480 (629)
T ss_pred HHHHHHhhc-chhhH
Confidence 999999987 44443
No 174
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.41 E-value=2.5e-06 Score=74.14 Aligned_cols=77 Identities=31% Similarity=0.348 Sum_probs=53.7
Q ss_pred HHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchH-HHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 002375 833 LNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQM-LHLRAAFYESIGDLTSAIRDSQAALCLDPN 909 (929)
Q Consensus 833 ~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~-~~~la~~~~~~g~~~~A~~~~~~al~l~P~ 909 (929)
++++++..|....++..+|.++...+++++|+..+++++...|.+.. +..+|.++...|++++|...++++++.+|+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 23 YEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100 (100)
T ss_pred HHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHHHHHHHHHHHccCCC
Confidence 33333334444456667777777778888888888888877777753 346677888888888888888888777763
No 175
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.40 E-value=7.4e-05 Score=75.22 Aligned_cols=259 Identities=14% Similarity=0.052 Sum_probs=172.5
Q ss_pred HHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHHHHHhcCCCCCChH
Q 002375 649 LLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESST 728 (929)
Q Consensus 649 ~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~l~p~~~a~~~l~~~l~~~~~~~~~~~ 728 (929)
-++-.|+|.+++..-++.-... ...+...++.+.|..+|++..-+......- .|...+...++..+.. ++..+
T Consensus 17 n~fY~Gnyq~~ine~~~~~~~~-~~~e~d~y~~raylAlg~~~~~~~eI~~~~--~~~lqAvr~~a~~~~~----e~~~~ 89 (299)
T KOG3081|consen 17 NYFYLGNYQQCINEAEKFSSSK-TDVELDVYMYRAYLALGQYQIVISEIKEGK--ATPLQAVRLLAEYLEL----ESNKK 89 (299)
T ss_pred HHHHhhHHHHHHHHHHhhcccc-chhHHHHHHHHHHHHccccccccccccccc--CChHHHHHHHHHHhhC----cchhH
Confidence 3455688888888776654433 667888889999999998765544332221 1111222222222221 12212
Q ss_pred HHHHHHHHHhhchhccCchh-HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 002375 729 YVIQLLEEALRCPSDGLRKG-QALNNLGSIYVECGKLDQAENCYINALDIKHTRAHQGLARVYYLKNELKAAYDEMTKLL 807 (929)
Q Consensus 729 ~a~~~~~~Al~~~~~~l~~~-~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al 807 (929)
..+..+.+-+. ....... .....-|.++...|++++|....... ..-++...-..++.+..+.+-|...++++.
T Consensus 90 ~~~~~l~E~~a--~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~---~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq 164 (299)
T KOG3081|consen 90 SILASLYELVA--DSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG---ENLEAAALNVQILLKMHRFDLAEKELKKMQ 164 (299)
T ss_pred HHHHHHHHHHH--hhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc---chHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21111111110 0001112 34555678899999999999988763 334455555677888889999999999998
Q ss_pred HHccCC-----HHHHHHHh-hcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHH
Q 002375 808 EKAQYS-----ASAFEKRS-EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLH 881 (929)
Q Consensus 808 ~~~p~~-----~~~~~~lg-~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~ 881 (929)
+.+.+. +.+|..++ .-++..+|.-+|+..-+..|..+...+.++.+.+.+|+|++|...++.++..+++++...
T Consensus 165 ~ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL 244 (299)
T KOG3081|consen 165 QIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETL 244 (299)
T ss_pred ccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHH
Confidence 876553 34566666 345688999999999997887899999999999999999999999999999999998655
Q ss_pred -HHHHHHHHcCCHHHH-HHHHHHHhccCCCCHHHHHHHHH
Q 002375 882 -LRAAFYESIGDLTSA-IRDSQAALCLDPNHMETLDLYNR 919 (929)
Q Consensus 882 -~la~~~~~~g~~~~A-~~~~~~al~l~P~~~~a~~~~~~ 919 (929)
++-.+-...|...++ .+...+....+|+++-+...-++
T Consensus 245 ~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~vk~~~ek 284 (299)
T KOG3081|consen 245 ANLIVLALHLGKDAEVTERNLSQLKLSHPEHPFVKHLNEK 284 (299)
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhcCCcchHHHHHHHH
Confidence 555555556666554 45667777889999876655443
No 176
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.40 E-value=5.7e-07 Score=77.33 Aligned_cols=80 Identities=24% Similarity=0.222 Sum_probs=65.0
Q ss_pred cCCHHHHHHHHHHHHhcCCC--CcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCch-HHHHHHHHHHHcCCHHHHHHH
Q 002375 823 YSDREMAKNDLNMATQLDPL--RTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQ-MLHLRAAFYESIGDLTSAIRD 899 (929)
Q Consensus 823 ~~~~~~A~~~~~~al~l~p~--~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~-~~~~la~~~~~~g~~~~A~~~ 899 (929)
.|+++.|+..++++++.+|. +...++.+|.++++.|++++|+..+++ .+.+|.+. ..+.+|.++..+|++++|++.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 46677777777777777774 455677899999999999999999999 77788774 445669999999999999999
Q ss_pred HHHH
Q 002375 900 SQAA 903 (929)
Q Consensus 900 ~~~a 903 (929)
|+++
T Consensus 81 l~~~ 84 (84)
T PF12895_consen 81 LEKA 84 (84)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 9875
No 177
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.39 E-value=1.6e-06 Score=74.49 Aligned_cols=81 Identities=15% Similarity=0.158 Sum_probs=63.1
Q ss_pred hcCHHHHHHHHHHHHhcCCc--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHHHHHhcCCCCCChHHH
Q 002375 653 LNCQKAAMRCLRLARNHSSS--EHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYV 730 (929)
Q Consensus 653 ~g~~~~A~~~l~~al~~~p~--~~~~~~~lg~~~~~~g~~~eA~~~~~~al~l~p~~~a~~~l~~~l~~~~~~~~~~~~a 730 (929)
+|+++.|+..++++++.+|. +...++.+|.++++.|++++|+..+++ ...+|.+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~----------------------- 57 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSN----------------------- 57 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCH-----------------------
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCC-----------------------
Confidence 58899999999999999885 566777889999999999999999988 6666654
Q ss_pred HHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002375 731 IQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINA 774 (929)
Q Consensus 731 ~~~~~~Al~~~~~~l~~~~a~~~lg~~~~~~g~~~eA~~~~~~a 774 (929)
....+.+|.++..+|++++|++.|+++
T Consensus 58 -----------------~~~~~l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 58 -----------------PDIHYLLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp -----------------HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred -----------------HHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence 233455688888888888888888764
No 178
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.37 E-value=4.6e-06 Score=82.36 Aligned_cols=125 Identities=14% Similarity=0.085 Sum_probs=83.9
Q ss_pred hCCHHHHHHHHHHHhcccC---CHhHHHHHHHHHHHhccHHHHHHHHHHHHhhcCCchhhhccccHHHHHHHHHHhhccc
Q 002375 528 EGQIRAAISEIDRIIVFKL---SVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSW 604 (929)
Q Consensus 528 ~g~~~~A~~~~~~al~~~~---~~~~~~~~a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~a~~ll~~~~~~~~~~ 604 (929)
.++|..+...+...++... ....+...|.++...|++++|+..|++++.+.|+..
T Consensus 12 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~---------------------- 69 (168)
T CHL00033 12 DKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPY---------------------- 69 (168)
T ss_pred ccccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccch----------------------
Confidence 3345555555555543333 234466666666666777777776666666544322
Q ss_pred chHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Q 002375 605 SPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWIL 684 (929)
Q Consensus 605 ~~A~~~l~l~~~~~~~d~~~al~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~ 684 (929)
..+.++.++|.++...|++++|+..+++++.++|.....+..+|.++
T Consensus 70 ---------------------------------~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~ 116 (168)
T CHL00033 70 ---------------------------------DRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVIC 116 (168)
T ss_pred ---------------------------------hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH
Confidence 12346788899999999999999999999999999888888888888
Q ss_pred H-------HcCCHHHHH-------HHHHHHHhhccch
Q 002375 685 Y-------DTGHREEAL-------SRAEKSISIERTF 707 (929)
Q Consensus 685 ~-------~~g~~~eA~-------~~~~~al~l~p~~ 707 (929)
. ..|++++|+ ..|++++..+|+.
T Consensus 117 ~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~ 153 (168)
T CHL00033 117 HYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGN 153 (168)
T ss_pred HHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 8 777776544 4444555555544
No 179
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.35 E-value=1e-05 Score=74.87 Aligned_cols=114 Identities=16% Similarity=0.121 Sum_probs=84.4
Q ss_pred ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcC
Q 002375 779 HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQ 858 (929)
Q Consensus 779 ~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g 858 (929)
++..++.-|......|+|++|++.++.+....|-.. -...+...+|.+|++.+
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~---------------------------ya~qAqL~l~yayy~~~ 61 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGE---------------------------YAEQAQLDLAYAYYKQG 61 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCc---------------------------ccHHHHHHHHHHHHHcc
Confidence 445666666666677777777776666666655432 23456677888888888
Q ss_pred CHHHHHHHHHHHHhcCCCch----HHHHHHHHHHHcCC---------------HHHHHHHHHHHhccCCCCHHHHHHHHH
Q 002375 859 KEVEAVEELSKAIAFKPDLQ----MLHLRAAFYESIGD---------------LTSAIRDSQAALCLDPNHMETLDLYNR 919 (929)
Q Consensus 859 ~~~eA~~~l~kal~~~p~~~----~~~~la~~~~~~g~---------------~~~A~~~~~~al~l~P~~~~a~~~~~~ 919 (929)
++++|+..+++-++++|+++ .++.+|.++..+.. ..+|...|++.+...|++..+-....|
T Consensus 62 ~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~dA~~R 141 (142)
T PF13512_consen 62 DYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAADARKR 141 (142)
T ss_pred CHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHHHHHhc
Confidence 88888888888888888775 34466877777766 889999999999999999988776655
No 180
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.33 E-value=2e-06 Score=71.67 Aligned_cols=70 Identities=26% Similarity=0.347 Sum_probs=63.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCchHHH-HHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHH
Q 002375 851 AAVLMDDQKEVEAVEELSKAIAFKPDLQMLH-LRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNRA 920 (929)
Q Consensus 851 a~~~~~~g~~~eA~~~l~kal~~~p~~~~~~-~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~l 920 (929)
..+|...+++++|++.+++++.++|+++..+ .+|.++..+|++.+|.+.|+++++..|+++.+.....++
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~l 72 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAML 72 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHhc
Confidence 5678899999999999999999999988666 679999999999999999999999999999988877765
No 181
>PRK11906 transcriptional regulator; Provisional
Probab=98.32 E-value=1.6e-05 Score=87.22 Aligned_cols=155 Identities=14% Similarity=0.025 Sum_probs=103.5
Q ss_pred HHHHHHHHHHcCC---HHHHHHHHHHHH---cCC--ChHHHHHHHHHHHHh---------CCHHHHHHHHHHHHHHccCC
Q 002375 751 LNNLGSIYVECGK---LDQAENCYINAL---DIK--HTRAHQGLARVYYLK---------NELKAAYDEMTKLLEKAQYS 813 (929)
Q Consensus 751 ~~~lg~~~~~~g~---~~eA~~~~~~al---~~~--~~~a~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~ 813 (929)
++..|......+. .+.|+.+|.+++ +++ ...++..++.++... ....+|.+..+++++.+|.+
T Consensus 258 ~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~D 337 (458)
T PRK11906 258 EMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVD 337 (458)
T ss_pred HHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCC
Confidence 3555665555443 456888888888 554 346777777777654 12446677777777777777
Q ss_pred HHHHHHHh----hcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHH-HHHHH-H
Q 002375 814 ASAFEKRS----EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLH-LRAAF-Y 887 (929)
Q Consensus 814 ~~~~~~lg----~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~-~la~~-~ 887 (929)
+.++..+| ..++++.|...|++|+.++|+.+.+|+..|.+..-.|+.++|++.++++++++|.-...- ..-.+ .
T Consensus 338 a~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~ 417 (458)
T PRK11906 338 GKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDM 417 (458)
T ss_pred HHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHH
Confidence 77777666 456677777777777777777777777777777777777777777777777777664333 22222 2
Q ss_pred HHcCCHHHHHHHHHHHhc
Q 002375 888 ESIGDLTSAIRDSQAALC 905 (929)
Q Consensus 888 ~~~g~~~~A~~~~~~al~ 905 (929)
+-..-.++|+..|-+--+
T Consensus 418 ~~~~~~~~~~~~~~~~~~ 435 (458)
T PRK11906 418 YVPNPLKNNIKLYYKETE 435 (458)
T ss_pred HcCCchhhhHHHHhhccc
Confidence 224556677776665433
No 182
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=5.8e-06 Score=88.37 Aligned_cols=144 Identities=17% Similarity=0.084 Sum_probs=95.7
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhcccCCHhHHHHHHHHHHHhccHHHHHHHHHHHHhhcCCchhhhccccHHHHHHHH
Q 002375 518 YKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLL 597 (929)
Q Consensus 518 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~a~~ll~~~ 597 (929)
....|..+++.|+|..|...|++++..-. |...-+.++.... . ++ +..++..++.+
T Consensus 211 ~ke~Gn~~fK~gk~~~A~~~Yerav~~l~-----------~~~~~~~ee~~~~-~-~~-----------k~~~~lNlA~c 266 (397)
T KOG0543|consen 211 KKERGNVLFKEGKFKLAKKRYERAVSFLE-----------YRRSFDEEEQKKA-E-AL-----------KLACHLNLAAC 266 (397)
T ss_pred HHHhhhHHHhhchHHHHHHHHHHHHHHhh-----------ccccCCHHHHHHH-H-HH-----------HHHHhhHHHHH
Confidence 45677788888888888888887763221 0000000111100 0 00 11344557777
Q ss_pred HHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHH
Q 002375 598 NHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERL 677 (929)
Q Consensus 598 ~~~~~~~~~A~~~l~l~~~~~~~d~~~al~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~ 677 (929)
+..++.|..|+++. .++|..+|+|..++|+.|.++..+|+|+.|+..|++++++.|+|..+.
T Consensus 267 ~lKl~~~~~Ai~~c------------------~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~ 328 (397)
T KOG0543|consen 267 YLKLKEYKEAIESC------------------NKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAAR 328 (397)
T ss_pred HHhhhhHHHHHHHH------------------HHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHH
Confidence 77778888886666 888888888888888888888888888888888888888888888887
Q ss_pred HHHHHHHHHcCCHHHH-HHHHHHHHhh
Q 002375 678 VYEGWILYDTGHREEA-LSRAEKSISI 703 (929)
Q Consensus 678 ~~lg~~~~~~g~~~eA-~~~~~~al~l 703 (929)
..+..+-.+..++.+. .+.|.+++..
T Consensus 329 ~el~~l~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 329 AELIKLKQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 7777777666555444 6666666654
No 183
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.31 E-value=0.00048 Score=78.76 Aligned_cols=66 Identities=24% Similarity=0.241 Sum_probs=42.8
Q ss_pred hcCC-CCcHHHHHHHHHHHhcCCHHHHHHHHHHH------Hhc----------------CC------Cch----HHHHHH
Q 002375 838 QLDP-LRTYPYRYRAAVLMDDQKEVEAVEELSKA------IAF----------------KP------DLQ----MLHLRA 884 (929)
Q Consensus 838 ~l~p-~~~~~~~~la~~~~~~g~~~eA~~~l~ka------l~~----------------~p------~~~----~~~~la 884 (929)
.++| .++..+..-+..+....+|++|...+-.+ +.+ .| +.. .+-..|
T Consensus 1073 DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqva 1152 (1416)
T KOG3617|consen 1073 DLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVA 1152 (1416)
T ss_pred hcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHH
Confidence 3455 35556666667777777888887765433 322 12 111 122569
Q ss_pred HHHHHcCCHHHHHHHHHHH
Q 002375 885 AFYESIGDLTSAIRDSQAA 903 (929)
Q Consensus 885 ~~~~~~g~~~~A~~~~~~a 903 (929)
.++.++|.|..|.+-|.+|
T Consensus 1153 e~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1153 ELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred HHHHhccchHHHHHHHhhh
Confidence 9999999999999888776
No 184
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.31 E-value=0.0012 Score=69.87 Aligned_cols=72 Identities=18% Similarity=0.022 Sum_probs=60.5
Q ss_pred HHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHc-CCHHHHHHHHHHHhcc
Q 002375 835 MATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLHLRAAFYESI-GDLTSAIRDSQAALCL 906 (929)
Q Consensus 835 ~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~la~~~~~~-g~~~~A~~~~~~al~l 906 (929)
+...+.|++.+.....+..-+..|++..|...-+.+....|....+.+++.+-... ||-.++..++-++++-
T Consensus 320 ~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 320 KLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 33456788888888888888899999999999999998888888888888888775 9999999999998874
No 185
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.30 E-value=0.00089 Score=68.61 Aligned_cols=61 Identities=30% Similarity=0.410 Sum_probs=26.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHcCCC--hHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcc
Q 002375 751 LNNLGSIYVECGKLDQAENCYINALDIKH--TRAHQGLARVYYLKNELKAAYDEMTKLLEKAQ 811 (929)
Q Consensus 751 ~~~lg~~~~~~g~~~eA~~~~~~al~~~~--~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p 811 (929)
+..++..+...+++++|...+..++...+ ...+..++..+...+..+++...+.+++...|
T Consensus 205 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (291)
T COG0457 205 LLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDP 267 (291)
T ss_pred HHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 33444444444444444444444444422 23333344443333334444444444444433
No 186
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.30 E-value=7.6e-05 Score=70.84 Aligned_cols=144 Identities=22% Similarity=0.170 Sum_probs=114.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHcC---CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHhhcCC
Q 002375 749 QALNNLGSIYVECGKLDQAENCYINALDI---KHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSD 825 (929)
Q Consensus 749 ~a~~~lg~~~~~~g~~~eA~~~~~~al~~---~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 825 (929)
.-.+.||......|++.+|...|++++.- +++..+.++++..+..+++.+|...+++..+.+|.-
T Consensus 90 qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~------------ 157 (251)
T COG4700 90 QNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAF------------ 157 (251)
T ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCcc------------
Confidence 34677899999999999999999999986 677889999999999999999999999888876542
Q ss_pred HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHcCCHHHHHHHHHH---
Q 002375 826 REMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLHLRAAFYESIGDLTSAIRDSQA--- 902 (929)
Q Consensus 826 ~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~--- 902 (929)
..++....+|.+|...|++.+|...|+.++...|+.......+..+.++|+.++|...+..
T Consensus 158 ----------------r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 158 ----------------RSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGPQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred ----------------CCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 3456677888999999999999999999999999988777778888899988777665544
Q ss_pred -HhccCCCCH-HHHHHHHHH
Q 002375 903 -ALCLDPNHM-ETLDLYNRA 920 (929)
Q Consensus 903 -al~l~P~~~-~a~~~~~~l 920 (929)
+.+-.|... ....++...
T Consensus 222 ~~~r~~~H~rkh~reW~~~A 241 (251)
T COG4700 222 TAKRSRPHYRKHHREWIKTA 241 (251)
T ss_pred HHHhcchhHHHHHHHHHHHH
Confidence 444445433 233344444
No 187
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.30 E-value=0.00027 Score=85.41 Aligned_cols=214 Identities=14% Similarity=0.033 Sum_probs=162.0
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccC-C-----HhHHHHHHHHHHHhccHHHHHHHHH
Q 002375 499 EKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-S-----VDCLELRAWLFIAADDYESALRDTL 572 (929)
Q Consensus 499 ~Ai~~~~~al~l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~-----~~~~~~~a~~~~~~g~~~eA~~~~~ 572 (929)
+..++|++.+.-+|+....|+..-..+.+.++.++|.+.+++|+..-. . -+.|..+-.+...-|.-+.-.+.|+
T Consensus 1442 esaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFe 1521 (1710)
T KOG1070|consen 1442 ESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFE 1521 (1710)
T ss_pred cCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHH
Confidence 457889999999999999999998899999999999999999985432 1 1123322233333455666777888
Q ss_pred HHHhhcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 002375 573 ALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLR 652 (929)
Q Consensus 573 ~al~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~d~~~al~~~~~al~~~p~~~~~~~~lg~~~~~ 652 (929)
+|-+..... ..+.-+.-+|...+.+++|.+++ +.+++.-......|...|..+++
T Consensus 1522 RAcqycd~~-------~V~~~L~~iy~k~ek~~~A~ell------------------~~m~KKF~q~~~vW~~y~~fLl~ 1576 (1710)
T KOG1070|consen 1522 RACQYCDAY-------TVHLKLLGIYEKSEKNDEADELL------------------RLMLKKFGQTRKVWIMYADFLLR 1576 (1710)
T ss_pred HHHHhcchH-------HHHHHHHHHHHHhhcchhHHHHH------------------HHHHHHhcchhhHHHHHHHHHhc
Confidence 877654322 34445677778888888887776 77777766778888888888888
Q ss_pred hcCHHHHHHHHHHHHhcCCc--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHHHHHhcCCCCCChHHH
Q 002375 653 LNCQKAAMRCLRLARNHSSS--EHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYV 730 (929)
Q Consensus 653 ~g~~~~A~~~l~~al~~~p~--~~~~~~~lg~~~~~~g~~~eA~~~~~~al~l~p~~~a~~~l~~~l~~~~~~~~~~~~a 730 (929)
+++-++|...+.+|++.-|. +.+.....|.+-++.|+.+.+...|+..+..+|..
T Consensus 1577 ~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKR----------------------- 1633 (1710)
T KOG1070|consen 1577 QNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKR----------------------- 1633 (1710)
T ss_pred ccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccc-----------------------
Confidence 88888888899999888887 56677777888888899988888888888887765
Q ss_pred HHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC
Q 002375 731 IQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI 777 (929)
Q Consensus 731 ~~~~~~Al~~~~~~l~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~ 777 (929)
.+.|+-+...-...|+.+.+...|++++.+
T Consensus 1634 -----------------tDlW~VYid~eik~~~~~~vR~lfeRvi~l 1663 (1710)
T KOG1070|consen 1634 -----------------TDLWSVYIDMEIKHGDIKYVRDLFERVIEL 1663 (1710)
T ss_pred -----------------hhHHHHHHHHHHccCCHHHHHHHHHHHHhc
Confidence 344666666666777778888888888776
No 188
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.27 E-value=6.6e-07 Score=91.88 Aligned_cols=194 Identities=14% Similarity=0.049 Sum_probs=146.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHH
Q 002375 677 LVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGS 756 (929)
Q Consensus 677 ~~~lg~~~~~~g~~~eA~~~~~~al~l~p~~~a~~~l~~~l~~~~~~~~~~~~a~~~~~~Al~~~~~~l~~~~a~~~lg~ 756 (929)
.-..|.-|+++|+|++|+.+|.+++..+|.+ +..+.+.+.
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~N----------------------------------------pV~~~NRA~ 139 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHN----------------------------------------PVYHINRAL 139 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCC----------------------------------------ccchhhHHH
Confidence 3457999999999999999999999999976 334778888
Q ss_pred HHHHcCCHHHHHHHHHHHHcCC--ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHhhcCCHHHHHHHHH
Q 002375 757 IYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLN 834 (929)
Q Consensus 757 ~~~~~g~~~eA~~~~~~al~~~--~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~A~~~~~ 834 (929)
+|++.+++..|...+..|+.++ ...+|...+.+-..+|+..+|.+.++.++++.|++.+.--..+......++. .
T Consensus 140 AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~Sl~E~~-I-- 216 (536)
T KOG4648|consen 140 AYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNMEAKKDCETVLALEPKNIELKKSLARINSLRERK-I-- 216 (536)
T ss_pred HHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHhcchHhhh-H--
Confidence 9999999999999999999984 4568999999999999999999999999999999877644444222211111 1
Q ss_pred HHHhcCCCCcHH---------HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 002375 835 MATQLDPLRTYP---------YRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLHLRAAFYESIGDLTSAIRDSQAALC 905 (929)
Q Consensus 835 ~al~l~p~~~~~---------~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 905 (929)
+.+..|....+ ....|..+...|.++.++..+.+.+....++..+..-+..|.+.-+++.|+...-++..
T Consensus 217 -~~KsT~G~~~A~Q~~~Q~l~~K~~G~~Fsk~~~~~~~i~~~~~~~A~~~~~~~L~~~~~~~~KI~~~~~~~~~~~~~~~ 295 (536)
T KOG4648|consen 217 -ATKSTPGFTPARQGMIQILPIKKPGYKFSKKAMRSVPVVDVVSPRATIDDSNQLRISDEDIDKIFNSNCGIIEEVKKTN 295 (536)
T ss_pred -HhhcCCCCCccccchhhhccccCcchhhhhhhccccceeEeeccccccCccccCcccHHHHHHHhhcchhHHHHHHhcC
Confidence 11111221111 22346667778888888888887776665555444448888889999999999999999
Q ss_pred cCCCCHHHH
Q 002375 906 LDPNHMETL 914 (929)
Q Consensus 906 l~P~~~~a~ 914 (929)
.+|....+.
T Consensus 296 ~~~s~~~~~ 304 (536)
T KOG4648|consen 296 PKPTPMPDT 304 (536)
T ss_pred CCCCcCccc
Confidence 988765443
No 189
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.27 E-value=2.4e-06 Score=70.01 Aligned_cols=66 Identities=27% Similarity=0.258 Sum_probs=51.3
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCchHHH-HHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHH
Q 002375 855 MDDQKEVEAVEELSKAIAFKPDLQMLH-LRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNRA 920 (929)
Q Consensus 855 ~~~g~~~eA~~~l~kal~~~p~~~~~~-~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~l 920 (929)
++.|++++|+..|++++..+|++.... .+|.+|.+.|++++|...+++++..+|+++..+.++++|
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~i 68 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQI 68 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhcC
Confidence 567888888888888888888776554 668888888888888888888888888887777777654
No 190
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.26 E-value=1.9e-05 Score=83.09 Aligned_cols=67 Identities=9% Similarity=-0.093 Sum_probs=35.7
Q ss_pred HHHHHHHHHH-HHhCCHHHHHHHHHHHhcccC----CHhHHHHHHHHHHHhccHHHHHHHHHHHHhhcCCch
Q 002375 516 FPYKYRAVAK-MEEGQIRAAISEIDRIIVFKL----SVDCLELRAWLFIAADDYESALRDTLALLALESNYM 582 (929)
Q Consensus 516 ~a~~~~a~~~-~~~g~~~~A~~~~~~al~~~~----~~~~~~~~a~~~~~~g~~~eA~~~~~~al~~~p~~~ 582 (929)
..++..|..+ ...|+|++|+..|++.+...| .+..++.+|.+|+..|++++|+..|+++++.+|+++
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~ 214 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSP 214 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCc
Confidence 4444444443 344555555555555555555 134555555555555555555555555555555444
No 191
>PRK15331 chaperone protein SicA; Provisional
Probab=98.26 E-value=1.4e-05 Score=75.58 Aligned_cols=105 Identities=14% Similarity=0.027 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHh----hcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhc
Q 002375 782 AHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS----EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDD 857 (929)
Q Consensus 782 a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg----~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~ 857 (929)
..+..|.-++..|++++|...|+-+...+|.+...|..+| ..+++++|+..|..+..++++++.+.+..|.+++.+
T Consensus 39 ~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l 118 (165)
T PRK15331 39 GLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLM 118 (165)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHh
Confidence 4555666666666666666666666555555555544444 334455555555555555556666666666666666
Q ss_pred CCHHHHHHHHHHHHhcCCCchHHHHHHHHH
Q 002375 858 QKEVEAVEELSKAIAFKPDLQMLHLRAAFY 887 (929)
Q Consensus 858 g~~~eA~~~l~kal~~~p~~~~~~~la~~~ 887 (929)
|+.+.|...|+.+++ .|.+..+..++..+
T Consensus 119 ~~~~~A~~~f~~a~~-~~~~~~l~~~A~~~ 147 (165)
T PRK15331 119 RKAAKARQCFELVNE-RTEDESLRAKALVY 147 (165)
T ss_pred CCHHHHHHHHHHHHh-CcchHHHHHHHHHH
Confidence 666666666666666 35555444444444
No 192
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.26 E-value=0.023 Score=66.73 Aligned_cols=407 Identities=13% Similarity=0.008 Sum_probs=222.8
Q ss_pred hhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccC-CHhHHHHHHHHHHHhccHHHHHHHHHHH
Q 002375 496 LGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLAL 574 (929)
Q Consensus 496 ~~~~Ai~~~~~al~l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~~g~~~eA~~~~~~a 574 (929)
+.++|++...+.++..|+...+....|.++.++|+.++|...++..-...+ +...+..+-.+|..++++++|...|+++
T Consensus 24 qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~ 103 (932)
T KOG2053|consen 24 QFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERA 103 (932)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 344788888888888888888888888888888888888877766654444 3334666677888888888888888888
Q ss_pred HhhcCCchhhhccccHHHHHHHHHHhhcccc----hHHHHHHh-----hhcccccc----------ccc-------cHHH
Q 002375 575 LALESNYMMFHGRVSGDHLVKLLNHHVRSWS----PADCWIKL-----YDRWSSVD----------DIG-------SLAV 628 (929)
Q Consensus 575 l~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~----~A~~~l~l-----~~~~~~~d----------~~~-------al~~ 628 (929)
+..+|+.. .+.-+-..|.+.+.|. .|..+.+. |-.|+... ... +-..
T Consensus 104 ~~~~P~ee-------ll~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m 176 (932)
T KOG2053|consen 104 NQKYPSEE-------LLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKM 176 (932)
T ss_pred HhhCCcHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHH
Confidence 88888833 2222233333333332 23222222 22332200 000 0112
Q ss_pred HHHHHhcC-CCChH-HHHHHHHHHHHhcCHHHHHHHHHH-HHh-cCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 002375 629 INQMLIND-PGKSF-LRFRQSLLLLRLNCQKAAMRCLRL-ARN-HSSSEHERLVYEGWILYDTGHREEALSRAEKSISIE 704 (929)
Q Consensus 629 ~~~al~~~-p~~~~-~~~~lg~~~~~~g~~~~A~~~l~~-al~-~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~l~ 704 (929)
.++.++.. +-... -....-.++..+|++++|...+.. ..+ ..+.+...-...+..+...+++.+-.+...+++...
T Consensus 177 ~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 177 VQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 23334333 11111 122333566778999999999833 333 344444455566778888999999999999999988
Q ss_pred cch-HHHHH-HHHHHHhcCCCC-CChHHHHHHHHHHhhchhccCc-----hhHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 002375 705 RTF-EAFFL-KAYILADTNLDP-ESSTYVIQLLEEALRCPSDGLR-----KGQALNNLGSIYVECGKLDQAENCYINALD 776 (929)
Q Consensus 705 p~~-~a~~~-l~~~l~~~~~~~-~~~~~a~~~~~~Al~~~~~~l~-----~~~a~~~lg~~~~~~g~~~eA~~~~~~al~ 776 (929)
+++ ..+.. .-.++......+ +........++..++...+.+. |--++..+-.-+...|+.+++.-.|-+-..
T Consensus 257 ~Ddy~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~kfg 336 (932)
T KOG2053|consen 257 NDDYKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEEMLSYYFKKFG 336 (932)
T ss_pred CcchHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChHHHHHHHHHHhC
Confidence 886 22222 222222221111 1111112223333322222221 224444444444566777776655543221
Q ss_pred CC--------------ChH------------------------HHHHHHHHHHHhCCHH----HH-HHHHHHHHHHc---
Q 002375 777 IK--------------HTR------------------------AHQGLARVYYLKNELK----AA-YDEMTKLLEKA--- 810 (929)
Q Consensus 777 ~~--------------~~~------------------------a~~~la~~~~~~g~~~----~A-~~~~~~al~~~--- 810 (929)
.. +++ .+...-.+....|.+. +. ...+++.....
T Consensus 337 ~kpcc~~Dl~~yl~~l~~~q~~~l~~~l~~~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~g 416 (932)
T KOG2053|consen 337 DKPCCAIDLNHYLGHLNIDQLKSLMSKLVLADDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKG 416 (932)
T ss_pred CCcHhHhhHHHhhccCCHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHhcc
Confidence 10 000 0111112222333221 11 12222222111
Q ss_pred --------cC---CHHHHHHHh------------hcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHH
Q 002375 811 --------QY---SASAFEKRS------------EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEEL 867 (929)
Q Consensus 811 --------p~---~~~~~~~lg------------~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l 867 (929)
|. ..+.+..++ ..+..-+|+-.++..+..+|.+...-..+-.+|.-.|-+..|.+.|
T Consensus 417 ls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y 496 (932)
T KOG2053|consen 417 LSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELY 496 (932)
T ss_pred ccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHH
Confidence 11 111222222 2345578999999999999999999999999999999999999888
Q ss_pred HHHHhcC-CCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 002375 868 SKAIAFK-PDLQMLHLRAAFYESIGDLTSAIRDSQAALCLDPN 909 (929)
Q Consensus 868 ~kal~~~-p~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~ 909 (929)
...=-.+ ..+..-|..-..+...|++..|...+...++..-+
T Consensus 497 ~tLdIK~IQ~DTlgh~~~~~~~t~g~~~~~s~~~~~~lkfy~~ 539 (932)
T KOG2053|consen 497 KTLDIKNIQTDTLGHLIFRRAETSGRSSFASNTFNEHLKFYDS 539 (932)
T ss_pred HhcchHHhhhccchHHHHHHHHhcccchhHHHHHHHHHHHHhh
Confidence 7542111 12223333344455567777777777777776433
No 193
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=98.25 E-value=8.3e-07 Score=87.79 Aligned_cols=56 Identities=23% Similarity=0.207 Sum_probs=42.7
Q ss_pred EEEehhHHHhccCHHHHHHhcCCCCcCCC---------CeeEecCCCCCHHHH-HHHhhhhccCCCC
Q 002375 228 EISFVRNKIASLSSPFKAMLYGGFVESKR---------KTIDFSHDGVSVEGL-RAVEVYTRTSRVD 284 (929)
Q Consensus 228 ~~~~hr~iLaa~S~~F~~m~~~~~~e~~~---------~~i~~~~~~~~~~~~-~~~l~~~yt~~~~ 284 (929)
++.||++|.|+||++||.++....+|... ..|.+++ -|=|.+| -.+++||||++++
T Consensus 262 eikahkai~aaRS~ffRnLL~RkiregeE~sdrtlr~PkRIifdE-~I~PkafA~i~lhclYTD~lD 327 (401)
T KOG2838|consen 262 EIKAHKAIAAARSKFFRNLLLRKIREGEEGSDRTLRRPKRIIFDE-LIFPKAFAPIFLHCLYTDRLD 327 (401)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHhhcccccccccccCCceeechh-hhcchhhhhhhhhhheecccc
Confidence 68999999999999999999776665432 2566643 3445555 4678999999997
No 194
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.25 E-value=0.0017 Score=73.27 Aligned_cols=223 Identities=14% Similarity=0.012 Sum_probs=115.2
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch--HHHHHHHHHHH
Q 002375 641 FLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF--EAFFLKAYILA 718 (929)
Q Consensus 641 ~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~l~p~~--~a~~~l~~~l~ 718 (929)
..|-..+.-|...|+|+.|.+.|.++- ....-...|-+.|+++.|.+.-++... |.. ..|...+..+.
T Consensus 766 ~yy~~iadhyan~~dfe~ae~lf~e~~--------~~~dai~my~k~~kw~da~kla~e~~~--~e~t~~~yiakaedld 835 (1636)
T KOG3616|consen 766 GYYGEIADHYANKGDFEIAEELFTEAD--------LFKDAIDMYGKAGKWEDAFKLAEECHG--PEATISLYIAKAEDLD 835 (1636)
T ss_pred ccchHHHHHhccchhHHHHHHHHHhcc--------hhHHHHHHHhccccHHHHHHHHHHhcC--chhHHHHHHHhHHhHH
Confidence 345566777888888888888876642 222234456677888877777666543 333 44444444444
Q ss_pred hcCCC--CCChHHHHHHHHHHhhchhccCc---------------hhHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCChH
Q 002375 719 DTNLD--PESSTYVIQLLEEALRCPSDGLR---------------KGQALNNLGSIYVECGKLDQAENCYINALDIKHTR 781 (929)
Q Consensus 719 ~~~~~--~~~~~~a~~~~~~Al~~~~~~l~---------------~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~~~ 781 (929)
..|.- .+...-.++..++|+..|.+.-. -.+....+|.-+...|+...|...|-++-..
T Consensus 836 ehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d~---- 911 (1636)
T KOG3616|consen 836 EHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGDF---- 911 (1636)
T ss_pred hhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhhH----
Confidence 44400 00000012223333333333211 0255666777777778887777777665433
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHH--------------HHHccCC-HHHHHHHh----------hcCCHHHHHHHHHHH
Q 002375 782 AHQGLARVYYLKNELKAAYDEMTKL--------------LEKAQYS-ASAFEKRS----------EYSDREMAKNDLNMA 836 (929)
Q Consensus 782 a~~~la~~~~~~g~~~~A~~~~~~a--------------l~~~p~~-~~~~~~lg----------~~~~~~~A~~~~~~a 836 (929)
..-...|...+.+++|....+.- -.+..+- ...+...| ..|-++-|...-+-+
T Consensus 912 --kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~ 989 (1636)
T KOG3616|consen 912 --KAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIA 989 (1636)
T ss_pred --HHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHh
Confidence 11122233333333333321110 0000000 00111111 223334443333332
Q ss_pred HhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHH
Q 002375 837 TQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLH 881 (929)
Q Consensus 837 l~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~ 881 (929)
.+ ...+..+..++..+...|++++|-+.|-.+++++.-+..|-
T Consensus 990 ~k--~k~~~vhlk~a~~ledegk~edaskhyveaiklntynitwc 1032 (1636)
T KOG3616|consen 990 AK--DKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLNTYNITWC 1032 (1636)
T ss_pred hh--ccCccchhHHhhhhhhccchhhhhHhhHHHhhcccccchhh
Confidence 22 34567788899999999999999999999999887665443
No 195
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.24 E-value=0.00041 Score=79.28 Aligned_cols=36 Identities=8% Similarity=0.090 Sum_probs=28.7
Q ss_pred HhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 002375 633 LINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARN 668 (929)
Q Consensus 633 l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~ 668 (929)
+.....+-.+.+.+|..|...|+..+|+..|.+|..
T Consensus 960 iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 960 IAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred HHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 344566777888999999999999999988877643
No 196
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=98.23 E-value=1.5e-06 Score=98.39 Aligned_cols=68 Identities=18% Similarity=0.117 Sum_probs=54.9
Q ss_pred CCCCCEEEEEcCeEEEehhHHHhccCHHHHHHhcCCCCcCCCC------------eeEecCCCCCHHHHHHHhhhhccCC
Q 002375 215 EEDDSVTFCVRDKEISFVRNKIASLSSPFKAMLYGGFVESKRK------------TIDFSHDGVSVEGLRAVEVYTRTSR 282 (929)
Q Consensus 215 ~~~~~v~~~v~~~~~~~hr~iLaa~S~~F~~m~~~~~~e~~~~------------~i~~~~~~~~~~~~~~~l~~~yt~~ 282 (929)
|...+|||.||++.|+|||.||++||++|+.+|...-.-|..+ .|.+ +++.|..|..+|+||||++
T Consensus 556 ds~hDVtf~vg~~~F~aHKfIl~~rs~flrkL~l~~~~~s~~~dIY~~~~~~~~~~~~v--e~i~p~mfe~lL~~iYtdt 633 (1267)
T KOG0783|consen 556 DSFHDVTFYVGTSMFHAHKFILCARSSFLRKLLLQKKKSSVSNDIYIEEITQSHSTIRV--EDIPPLMFEILLHYIYTDT 633 (1267)
T ss_pred cccceEEEEecCeecccceEEEEeccHHHHHHHHhhccccccceeeeecccccCceeee--ccCCHHHHHHHHHHHhccc
Confidence 3444599999999999999999999999999996443322222 4446 8999999999999999997
Q ss_pred CC
Q 002375 283 VD 284 (929)
Q Consensus 283 ~~ 284 (929)
+-
T Consensus 634 ~~ 635 (1267)
T KOG0783|consen 634 LL 635 (1267)
T ss_pred cc
Confidence 54
No 197
>PRK15331 chaperone protein SicA; Provisional
Probab=98.21 E-value=1.9e-05 Score=74.71 Aligned_cols=107 Identities=7% Similarity=-0.095 Sum_probs=91.6
Q ss_pred HHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHH
Q 002375 631 QMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAF 710 (929)
Q Consensus 631 ~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~l~p~~~a~ 710 (929)
.+..+.++.-...+..|.-++..|++++|...|+-....+|.+++.+..||.++..+++|++|+..|..+..+++++
T Consensus 28 ~l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~d--- 104 (165)
T PRK15331 28 DVHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKND--- 104 (165)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCC---
Confidence 33444556667788899999999999999999999999999999999999999999999999999999998887766
Q ss_pred HHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC
Q 002375 711 FLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI 777 (929)
Q Consensus 711 ~~l~~~l~~~~~~~~~~~~a~~~~~~Al~~~~~~l~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~ 777 (929)
+...+..|.+++.+|+.+.|..+|+.++..
T Consensus 105 -------------------------------------p~p~f~agqC~l~l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 105 -------------------------------------YRPVFFTGQCQLLMRKAAKARQCFELVNER 134 (165)
T ss_pred -------------------------------------CCccchHHHHHHHhCCHHHHHHHHHHHHhC
Confidence 333677889999999999999999998885
No 198
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.20 E-value=0.0039 Score=70.51 Aligned_cols=51 Identities=22% Similarity=0.085 Sum_probs=34.1
Q ss_pred HHHHhCCHHHHHHHHHHHhcccCCHhHHHHHHHHHHHhccHHHHHHHHHHH
Q 002375 524 AKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLAL 574 (929)
Q Consensus 524 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~a 574 (929)
+....++|.+|+..++.+-+.+.....|-..+.-|...|+|+-|.+.|.++
T Consensus 741 aai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~ 791 (1636)
T KOG3616|consen 741 AAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEA 791 (1636)
T ss_pred HHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhc
Confidence 344556777777777766655545555666777777777887777777654
No 199
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.18 E-value=3.5e-05 Score=78.84 Aligned_cols=113 Identities=12% Similarity=0.060 Sum_probs=98.3
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHH
Q 002375 783 HQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVE 862 (929)
Q Consensus 783 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~e 862 (929)
.|+.|.-+++.|+|..|...|...++..|++. ..+.+++.||.+++.+|++++
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~---------------------------~~~nA~yWLGe~~y~qg~y~~ 196 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNST---------------------------YTPNAYYWLGESLYAQGDYED 196 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCc---------------------------ccchhHHHHHHHHHhcccchH
Confidence 66777778888888888888888888888763 346789999999999999999
Q ss_pred HHHHHHHHHhcCCCch----HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHh
Q 002375 863 AVEELSKAIAFKPDLQ----MLHLRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNRARD 922 (929)
Q Consensus 863 A~~~l~kal~~~p~~~----~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~l~~ 922 (929)
|...|..+++-.|+++ .++-+|.+...+|+.++|...|+++++..|+.+.+.....++.+
T Consensus 197 Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~Ak~~~~~ 260 (262)
T COG1729 197 AAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKLAKVALKA 260 (262)
T ss_pred HHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHhc
Confidence 9999999999998874 44577999999999999999999999999999999888777754
No 200
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.16 E-value=0.023 Score=63.00 Aligned_cols=378 Identities=13% Similarity=-0.010 Sum_probs=214.4
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccC-CHhHHHHHHHHHHHhccHHHHHHHHHHHHhhcCCchh
Q 002375 505 NYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLALLALESNYMM 583 (929)
Q Consensus 505 ~~al~l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~~g~~~eA~~~~~~al~~~p~~~~ 583 (929)
++-++.+|.+..+|+.+-.-+..+ -+++....|++.+..-| .|..|......-+..++|+.-...|.+.|..--+-..
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDL 88 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDL 88 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhH
Confidence 567888999999999887766555 89999999999987777 7788888888888889999999999988864333221
Q ss_pred hhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHH---hcCCCChHHHHHHHHHHH---------
Q 002375 584 FHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQML---INDPGKSFLRFRQSLLLL--------- 651 (929)
Q Consensus 584 ~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~d~~~al~~~~~al---~~~p~~~~~~~~lg~~~~--------- 651 (929)
| ...+..+....+....+...+ ...|+-++ ..++.....|...+..+.
T Consensus 89 W------~lYl~YVR~~~~~~~~~r~~m--------------~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~e 148 (656)
T KOG1914|consen 89 W------KLYLSYVRETKGKLFGYREKM--------------VQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYE 148 (656)
T ss_pred H------HHHHHHHHHHccCcchHHHHH--------------HHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHH
Confidence 1 112344444444444332222 12222222 235555666665554432
Q ss_pred HhcCHHHHHHHHHHHHhcCCchHH-HHHHH-------------HHHHHHcCCHHHHHHHHHHHHhhc-------cc----
Q 002375 652 RLNCQKAAMRCLRLARNHSSSEHE-RLVYE-------------GWILYDTGHREEALSRAEKSISIE-------RT---- 706 (929)
Q Consensus 652 ~~g~~~~A~~~l~~al~~~p~~~~-~~~~l-------------g~~~~~~g~~~eA~~~~~~al~l~-------p~---- 706 (929)
.+.+.+.-.+.|++|+..--.+.+ .|... -.+--....|..|...+++...+- |.
T Consensus 149 e~QRI~~vRriYqral~tPm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~ 228 (656)
T KOG1914|consen 149 ENQRITAVRRIYQRALVTPMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPK 228 (656)
T ss_pred HHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCC
Confidence 233556666778888765433321 12111 112223344666666666554321 11
Q ss_pred h--------HHHHHHHHHHHhcCCCCCChHH----HHHHHHHHhhchhccCchhHHHHHHHHHHHHcCC-----------
Q 002375 707 F--------EAFFLKAYILADTNLDPESSTY----VIQLLEEALRCPSDGLRKGQALNNLGSIYVECGK----------- 763 (929)
Q Consensus 707 ~--------~a~~~l~~~l~~~~~~~~~~~~----a~~~~~~Al~~~~~~l~~~~a~~~lg~~~~~~g~----------- 763 (929)
. +.|.+....-....+....-.. ..=.+++++.++-- .++.|+..+..+...++
T Consensus 229 ~T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~---~peiWy~~s~yl~~~s~l~~~~~d~~~a 305 (656)
T KOG1914|consen 229 GTKDEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGY---HPEIWYDYSMYLIEISDLLTEKGDVPDA 305 (656)
T ss_pred CChHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHhhHHHHHhcccccc
Confidence 0 1122222111111111000000 00112222221111 13444444444443333
Q ss_pred ---HHHHHHHHHHHHcC---CChHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHccCCHH-HHHHHh----hcCCHHHH
Q 002375 764 ---LDQAENCYINALDI---KHTRAHQGLARVYYLKN---ELKAAYDEMTKLLEKAQYSAS-AFEKRS----EYSDREMA 829 (929)
Q Consensus 764 ---~~eA~~~~~~al~~---~~~~a~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~-~~~~lg----~~~~~~~A 829 (929)
.+++..+|++++.. .....++.++.--...- +.+.--..+++++.+...+.. +|...- ...-...|
T Consensus 306 ~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaa 385 (656)
T KOG1914|consen 306 KSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAA 385 (656)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHH
Confidence 67888889988876 22234444444322222 255556677777765444333 222222 33445778
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHH-HHhcCCHHHHHHHHHHHHhcCCCchHHHHH-HHHHHHcCCHHHHHHHHHHHhcc
Q 002375 830 KNDLNMATQLDPLRTYPYRYRAAV-LMDDQKEVEAVEELSKAIAFKPDLQMLHLR-AAFYESIGDLTSAIRDSQAALCL 906 (929)
Q Consensus 830 ~~~~~~al~l~p~~~~~~~~la~~-~~~~g~~~eA~~~l~kal~~~p~~~~~~~l-a~~~~~~g~~~~A~~~~~~al~l 906 (929)
...|.+|-+..-....++..-|.+ |...++.+-|...|+-.++..++.+.+.+. ...+...++-..|...|++++..
T Consensus 386 R~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 386 RKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS 464 (656)
T ss_pred HHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence 888888876544444455444432 456789999999999999999999887754 78888899999999999999987
No 201
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.14 E-value=4.5e-05 Score=69.57 Aligned_cols=100 Identities=19% Similarity=0.113 Sum_probs=78.2
Q ss_pred HhHHHHHHHHHHHhccHHHHHHHHHHHHhhcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHH
Q 002375 548 VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLA 627 (929)
Q Consensus 548 ~~~~~~~a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~d~~~al~ 627 (929)
|...+.+|+++-..|+.++|+..|++++.......
T Consensus 1 ~~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~--------------------------------------------- 35 (120)
T PF12688_consen 1 PRALYELAWAHDSLGREEEAIPLYRRALAAGLSGA--------------------------------------------- 35 (120)
T ss_pred CchHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCch---------------------------------------------
Confidence 34567788888888888888888888887654433
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc---hHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002375 628 VINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSS---EHERLVYEGWILYDTGHREEALSRAEKSIS 702 (929)
Q Consensus 628 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~---~~~~~~~lg~~~~~~g~~~eA~~~~~~al~ 702 (929)
....++..+|..+..+|++++|+..+++++...|+ +......++.++...|++++|+..+-.++.
T Consensus 36 ----------~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 36 ----------DRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred ----------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 11235667888888888888888888888888787 677778888888888999998888877664
No 202
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.13 E-value=6.8e-05 Score=71.95 Aligned_cols=107 Identities=18% Similarity=0.169 Sum_probs=74.7
Q ss_pred HHHHHHHHhhHHHHhcccHHHHHHHHHHHHhcCccccHHHHHHHHHHhchHHHHHHHHHhhhcCCCcchhhhHHHHHhhh
Q 002375 417 QRMLALHQLGCVMFEREEYKDACYYFEAAADAGHIYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNL 496 (929)
Q Consensus 417 ~~a~~~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~~~a~la~~~~~~g~a~~a~~~~~~l~~~~~~~~~~~~~~~l~~~ 496 (929)
..+..+-.-|+-+|..|+|++|..-|..|++.-|..+.-.-..+|.+++.+..-+. .
T Consensus 93 ~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~-----------------------k 149 (271)
T KOG4234|consen 93 EKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLR-----------------------K 149 (271)
T ss_pred HHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhh-----------------------h
Confidence 34566778899999999999999999999999887665333334444443333222 2
Q ss_pred hhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccC
Q 002375 497 GREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL 546 (929)
Q Consensus 497 ~~~Ai~~~~~al~l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~ 546 (929)
-+.||....+||+++|.+..++..+|.+|.+...|++|+..|.++++..|
T Consensus 150 ~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dP 199 (271)
T KOG4234|consen 150 WESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDP 199 (271)
T ss_pred HHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCc
Confidence 23667777777777777777777777777777777777777777776665
No 203
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.12 E-value=4e-05 Score=84.75 Aligned_cols=114 Identities=20% Similarity=0.096 Sum_probs=84.9
Q ss_pred hccHHHHHHHHHHHHhhcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCCh
Q 002375 561 ADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKS 640 (929)
Q Consensus 561 ~g~~~eA~~~~~~al~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~d~~~al~~~~~al~~~p~~~ 640 (929)
.++++.|+..+++..+.+|+.. ..++.++...++-.+|...+ ++++...|.+.
T Consensus 182 t~~~~~ai~lle~L~~~~pev~---------~~LA~v~l~~~~E~~AI~ll------------------~~aL~~~p~d~ 234 (395)
T PF09295_consen 182 TQRYDEAIELLEKLRERDPEVA---------VLLARVYLLMNEEVEAIRLL------------------NEALKENPQDS 234 (395)
T ss_pred cccHHHHHHHHHHHHhcCCcHH---------HHHHHHHHhcCcHHHHHHHH------------------HHHHHhCCCCH
Confidence 4556666666666665554422 22444444444444453333 66666677777
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002375 641 FLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSI 701 (929)
Q Consensus 641 ~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al 701 (929)
.++...+..+...++++.|+...+++.+..|++...|..|+.+|...|++++|+..++.+-
T Consensus 235 ~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 235 ELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 8888899999999999999999999999999999999999999999999999998877543
No 204
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.12 E-value=6e-05 Score=68.73 Aligned_cols=67 Identities=18% Similarity=0.075 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCch---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch
Q 002375 641 FLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE---HERLVYEGWILYDTGHREEALSRAEKSISIERTF 707 (929)
Q Consensus 641 ~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~---~~~~~~lg~~~~~~g~~~eA~~~~~~al~l~p~~ 707 (929)
.+++.+|.++-.+|+.++|+..|++++....+. ..+++.+|..+..+|++++|+..+++++...|+.
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~ 71 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDD 71 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc
Confidence 467888889999999999999999998865443 5678888999999999999999999888877763
No 205
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.12 E-value=0.00034 Score=71.00 Aligned_cols=176 Identities=15% Similarity=0.127 Sum_probs=128.1
Q ss_pred ChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCch---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch----HHHH
Q 002375 639 KSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE---HERLVYEGWILYDTGHREEALSRAEKSISIERTF----EAFF 711 (929)
Q Consensus 639 ~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~---~~~~~~lg~~~~~~g~~~eA~~~~~~al~l~p~~----~a~~ 711 (929)
.+..++..|...+..|++++|+..|+.+....|.. ..+...++.++++.+++++|+...++-+.+.|++ -+++
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 46789999999999999999999999999988765 5788999999999999999999999999999988 3555
Q ss_pred HHHHHHHhcCC----CCCChHHHHHHHHHHhhchhccCc------------h--hHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002375 712 LKAYILADTNL----DPESSTYVIQLLEEALRCPSDGLR------------K--GQALNNLGSIYVECGKLDQAENCYIN 773 (929)
Q Consensus 712 ~l~~~l~~~~~----~~~~~~~a~~~~~~Al~~~~~~l~------------~--~~a~~~lg~~~~~~g~~~eA~~~~~~ 773 (929)
..|.++...-. ++.....+...+.+.+.-|-...= . +.--..+|..|.+.|.+..|+.-++.
T Consensus 113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~ 192 (254)
T COG4105 113 LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEE 192 (254)
T ss_pred HHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 66666443322 222233334444444443322210 0 12334578888999999999999999
Q ss_pred HHcC-----CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCH
Q 002375 774 ALDI-----KHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSA 814 (929)
Q Consensus 774 al~~-----~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 814 (929)
+++. ...+++..+..+|..+|-.++|.+.-.-+-...|++.
T Consensus 193 v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~ 238 (254)
T COG4105 193 VLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDSQ 238 (254)
T ss_pred HHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCc
Confidence 8887 1236888888999999998888776544444445554
No 206
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.11 E-value=0.0014 Score=66.28 Aligned_cols=123 Identities=18% Similarity=0.181 Sum_probs=62.9
Q ss_pred HHHHcCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHh----CCHHHHHHHHHHHHHHccCCHHHHHHHh----hcCCHHH
Q 002375 757 IYVECGKLDQAENCYINALDIKHTRAHQGLARVYYLK----NELKAAYDEMTKLLEKAQYSASAFEKRS----EYSDREM 828 (929)
Q Consensus 757 ~~~~~g~~~eA~~~~~~al~~~~~~a~~~la~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~lg----~~~~~~~ 828 (929)
++.++.+.+-|...++++.+++....+..||..+... ++..+|.-.|+..-++.|..+......+ .++++++
T Consensus 146 I~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~ee 225 (299)
T KOG3081|consen 146 ILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEE 225 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHH
Confidence 3444444555555555555554444444444433332 2244555555555554444444333333 3455555
Q ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHH-HHHHHHhcCCCchH
Q 002375 829 AKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVE-ELSKAIAFKPDLQM 879 (929)
Q Consensus 829 A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~-~l~kal~~~p~~~~ 879 (929)
|...++.++..++++++.+.++..+-...|+..++.+ .+.+....+|+++.
T Consensus 226 Ae~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~ 277 (299)
T KOG3081|consen 226 AESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPF 277 (299)
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchH
Confidence 5555555555666666666666666666776655543 34445555666543
No 207
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.10 E-value=1.1e-05 Score=66.00 Aligned_cols=57 Identities=16% Similarity=0.119 Sum_probs=54.0
Q ss_pred HHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch
Q 002375 651 LRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF 707 (929)
Q Consensus 651 ~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~l~p~~ 707 (929)
...|++++|+..|++++..+|++..++..+|.+|...|++++|...+++++..+|++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~ 58 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDN 58 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCH
Confidence 568999999999999999999999999999999999999999999999999999997
No 208
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.09 E-value=0.00043 Score=70.32 Aligned_cols=179 Identities=13% Similarity=0.084 Sum_probs=132.0
Q ss_pred ChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccC----CHhHHHHHHHHHHHhccHHHHHHHHHHHHhhcCCchhhhcccc
Q 002375 514 LSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL----SVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVS 589 (929)
Q Consensus 514 ~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~----~~~~~~~~a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~ 589 (929)
.+.-++..|...++.|+|++|+..|+++....| .+.....++..+++.++|++|+..+++-+.+.|+++..- -
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d---Y 109 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD---Y 109 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh---H
Confidence 356788999999999999999999999998887 566788899999999999999999999999999998321 3
Q ss_pred HHHHHHHHHHhhcc-cchHHHHHHhhhccccccccccHHHHHHHHhcCCCChH-----------------HHHHHHHHHH
Q 002375 590 GDHLVKLLNHHVRS-WSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSF-----------------LRFRQSLLLL 651 (929)
Q Consensus 590 a~~ll~~~~~~~~~-~~~A~~~l~l~~~~~~~d~~~al~~~~~al~~~p~~~~-----------------~~~~lg~~~~ 651 (929)
+.++.|+.+...-. ..+=. .....++..+...+..-|+..- --...|..|.
T Consensus 110 ~~YlkgLs~~~~i~~~~rDq-----------~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~ 178 (254)
T COG4105 110 AYYLKGLSYFFQIDDVTRDQ-----------SAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYL 178 (254)
T ss_pred HHHHHHHHHhccCCccccCH-----------HHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666422100 00000 0001225566777777776521 1235788899
Q ss_pred HhcCHHHHHHHHHHHHhcCCch---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc-cch
Q 002375 652 RLNCQKAAMRCLRLARNHSSSE---HERLVYEGWILYDTGHREEALSRAEKSISIE-RTF 707 (929)
Q Consensus 652 ~~g~~~~A~~~l~~al~~~p~~---~~~~~~lg~~~~~~g~~~eA~~~~~~al~l~-p~~ 707 (929)
+.|.+..|+.-++.+++..|+. .+++..+..+|..+|-.++|...-. .|..+ |++
T Consensus 179 kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~-vl~~N~p~s 237 (254)
T COG4105 179 KRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAK-VLGANYPDS 237 (254)
T ss_pred HhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHH-HHHhcCCCC
Confidence 9999999999999999987765 5678888899999999999877654 44444 443
No 209
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.07 E-value=3.2e-05 Score=68.86 Aligned_cols=90 Identities=28% Similarity=0.309 Sum_probs=75.4
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCch-----HHHHHHHHHHHcCCHHHH
Q 002375 822 EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQ-----MLHLRAAFYESIGDLTSA 896 (929)
Q Consensus 822 ~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~-----~~~~la~~~~~~g~~~~A 896 (929)
+.|+.+.|++.|.+++.+-|..+.+|++++..+.-+|+.++|++.+++++++..+.. .+..+|.+|..+|+.+.|
T Consensus 55 E~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd~A 134 (175)
T KOG4555|consen 55 EAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDDAA 134 (175)
T ss_pred hccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchHHH
Confidence 567778888888888888888888899999999999999999999999999875542 233789999999999999
Q ss_pred HHHHHHHhccCCCCH
Q 002375 897 IRDSQAALCLDPNHM 911 (929)
Q Consensus 897 ~~~~~~al~l~P~~~ 911 (929)
..+|+.|-++...+.
T Consensus 135 R~DFe~AA~LGS~FA 149 (175)
T KOG4555|consen 135 RADFEAAAQLGSKFA 149 (175)
T ss_pred HHhHHHHHHhCCHHH
Confidence 999999988876543
No 210
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.07 E-value=6.2e-05 Score=83.27 Aligned_cols=116 Identities=18% Similarity=0.116 Sum_probs=100.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHh----hcCCHHHH
Q 002375 754 LGSIYVECGKLDQAENCYINALDIKHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS----EYSDREMA 829 (929)
Q Consensus 754 lg~~~~~~g~~~eA~~~~~~al~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg----~~~~~~~A 829 (929)
+-..+...++++.|++.+++..+.+ +++...++.++...++..+|++.+.+++...|.+...+...+ ..++++.|
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~-pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lA 253 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERD-PEVAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELA 253 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcC-CcHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHH
Confidence 3445566789999999999987765 467778999999999999999999999999999988877777 56889999
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 002375 830 KNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKA 870 (929)
Q Consensus 830 ~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~ka 870 (929)
+...++++.+.|.....|..||.+|...|+++.|+..++.+
T Consensus 254 L~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 254 LEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 99999999999999999999999999999999999887644
No 211
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.07 E-value=0.0053 Score=71.82 Aligned_cols=229 Identities=14% Similarity=0.008 Sum_probs=131.4
Q ss_pred HHhccHHHHHHHHHHHHhhcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCC
Q 002375 559 IAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPG 638 (929)
Q Consensus 559 ~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~d~~~al~~~~~al~~~p~ 638 (929)
...+++.+|+....++++..|+.. .+..+-+....+.|..++|...+ +..-...++
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn~~------~a~vLkaLsl~r~gk~~ea~~~L------------------e~~~~~~~~ 75 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPNAL------YAKVLKALSLFRLGKGDEALKLL------------------EALYGLKGT 75 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCcH------HHHHHHHHHHHHhcCchhHHHHH------------------hhhccCCCC
Confidence 345666677777777777777766 55556666666667776664433 222233444
Q ss_pred ChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHH-HHHHH
Q 002375 639 KSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFL-KAYIL 717 (929)
Q Consensus 639 ~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~l~p~~~a~~~-l~~~l 717 (929)
+...+-.+-.+|..+|++++|...|+++...+|+ -+....+=.+|.+.+.|.+-.+.--+..+..|+...++. ....+
T Consensus 76 D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Sli 154 (932)
T KOG2053|consen 76 DDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLI 154 (932)
T ss_pred chHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHH
Confidence 5556666677777777777777777777777777 666666666777776666655555555555666622222 22222
Q ss_pred HhcCCCCCChHHHHHHHHHHhhchhccCc------hhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC----CChHHHHHHH
Q 002375 718 ADTNLDPESSTYVIQLLEEALRCPSDGLR------KGQALNNLGSIYVECGKLDQAENCYINALDI----KHTRAHQGLA 787 (929)
Q Consensus 718 ~~~~~~~~~~~~a~~~~~~Al~~~~~~l~------~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~----~~~~a~~~la 787 (929)
......+...... -...-|.+..++.+. ...-....-.++...|++++|.+.+..-+.- .+........
T Consensus 155 lqs~~~~~~~~~~-i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~ 233 (932)
T KOG2053|consen 155 LQSIFSENELLDP-ILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKL 233 (932)
T ss_pred HHhccCCcccccc-hhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 2111111111110 011111111111111 1111122234567789999999998544433 2333444556
Q ss_pred HHHHHhCCHHHHHHHHHHHHHHccCC
Q 002375 788 RVYYLKNELKAAYDEMTKLLEKAQYS 813 (929)
Q Consensus 788 ~~~~~~g~~~~A~~~~~~al~~~p~~ 813 (929)
..+...+++.+-.+...+++...+++
T Consensus 234 dllk~l~~w~~l~~l~~~Ll~k~~Dd 259 (932)
T KOG2053|consen 234 DLLKLLNRWQELFELSSRLLEKGNDD 259 (932)
T ss_pred HHHHHhcChHHHHHHHHHHHHhCCcc
Confidence 77788899999999999999999887
No 212
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.06 E-value=0.019 Score=62.78 Aligned_cols=161 Identities=13% Similarity=0.097 Sum_probs=97.9
Q ss_pred CCChHHHHHHHHHHhhchhccCch-------hHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCC-hH----HHHHHHHHHH
Q 002375 724 PESSTYVIQLLEEALRCPSDGLRK-------GQALNNLGSIYVECGKLDQAENCYINALDIKH-TR----AHQGLARVYY 791 (929)
Q Consensus 724 ~~~~~~a~~~~~~Al~~~~~~l~~-------~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~-~~----a~~~la~~~~ 791 (929)
.++...++....++.+.+.+...| +.....+|.....-+.++.|...|..|.+..+ .+ ...++|.+|.
T Consensus 336 ~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL 415 (629)
T KOG2300|consen 336 RGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYL 415 (629)
T ss_pred hCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHH
Confidence 334444444444444444444332 35666777777777788888888888777722 22 3456777777
Q ss_pred HhCCHHHHHHHHHHHHHHccCCHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002375 792 LKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAI 871 (929)
Q Consensus 792 ~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal 871 (929)
..|+-+.-.+.++. +.|.+...+... . ....+++..|...+.++++.||...+.+.+
T Consensus 416 ~~~~~ed~y~~ld~---i~p~nt~s~ssq---------------~-----l~a~~~~v~glfaf~qn~lnEaK~~l~e~L 472 (629)
T KOG2300|consen 416 RIGDAEDLYKALDL---IGPLNTNSLSSQ---------------R-----LEASILYVYGLFAFKQNDLNEAKRFLRETL 472 (629)
T ss_pred HhccHHHHHHHHHh---cCCCCCCcchHH---------------H-----HHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 76665444333332 233321111100 0 013456667778888999999999999988
Q ss_pred hcCCCch-------HHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 002375 872 AFKPDLQ-------MLHLRAAFYESIGDLTSAIRDSQAALCLD 907 (929)
Q Consensus 872 ~~~p~~~-------~~~~la~~~~~~g~~~~A~~~~~~al~l~ 907 (929)
+...... .+.++|.+....||..++.+..+-++++.
T Consensus 473 kmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlA 515 (629)
T KOG2300|consen 473 KMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLA 515 (629)
T ss_pred hhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHH
Confidence 8762211 11256888888999999998888887764
No 213
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.06 E-value=0.00011 Score=68.20 Aligned_cols=84 Identities=13% Similarity=0.074 Sum_probs=69.5
Q ss_pred ChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccC----CHhHHHHHHHHHHHhccHHHHHHHHHHHHhhcCCchhhhcccc
Q 002375 514 LSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL----SVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVS 589 (929)
Q Consensus 514 ~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~----~~~~~~~~a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~ 589 (929)
.+..++..|...++.|+|++|++.|+.+....| .+.+...++.+|+..+++++|+..+++.++++|+++..- -
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vd---Y 85 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVD---Y 85 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCcc---H
Confidence 356788889999999999999999999988777 667788999999999999999999999999999998321 3
Q ss_pred HHHHHHHHHHh
Q 002375 590 GDHLVKLLNHH 600 (929)
Q Consensus 590 a~~ll~~~~~~ 600 (929)
+++..|+.+..
T Consensus 86 a~Y~~gL~~~~ 96 (142)
T PF13512_consen 86 AYYMRGLSYYE 96 (142)
T ss_pred HHHHHHHHHHH
Confidence 45555555544
No 214
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.05 E-value=0.008 Score=63.87 Aligned_cols=186 Identities=13% Similarity=0.005 Sum_probs=127.0
Q ss_pred HHHHHHHHHHhcCCCC--hHHHHHHHHHHHHhCCHHHHHHHHHHHhcccCCHhHHHHHHHHH--HHhccHHHHHHHHHHH
Q 002375 499 EKIVDLNYASELDPTL--SFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLF--IAADDYESALRDTLAL 574 (929)
Q Consensus 499 ~Ai~~~~~al~l~P~~--~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~--~~~g~~~eA~~~~~~a 574 (929)
.|...-.++-.+-..+ +..+..-++.-.-.|+++.|.+-|+.+++. |....+-++|.+. ...|+++.|+.+-+.+
T Consensus 102 lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d-PEtRllGLRgLyleAqr~GareaAr~yAe~A 180 (531)
T COG3898 102 LARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD-PETRLLGLRGLYLEAQRLGAREAARHYAERA 180 (531)
T ss_pred HHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC-hHHHHHhHHHHHHHHHhcccHHHHHHHHHHH
Confidence 4555555554443333 345556677888899999999999999732 2222344555444 4579999999999999
Q ss_pred HhhcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCC-----hHHHHHHHHH
Q 002375 575 LALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGK-----SFLRFRQSLL 649 (929)
Q Consensus 575 l~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~d~~~al~~~~~al~~~p~~-----~~~~~~lg~~ 649 (929)
-...|.-++. ....-......|+|+.|+.+++... ....+.++- +.++...+..
T Consensus 181 a~~Ap~l~WA------~~AtLe~r~~~gdWd~AlkLvd~~~---------------~~~vie~~~aeR~rAvLLtAkA~s 239 (531)
T COG3898 181 AEKAPQLPWA------ARATLEARCAAGDWDGALKLVDAQR---------------AAKVIEKDVAERSRAVLLTAKAMS 239 (531)
T ss_pred HhhccCCchH------HHHHHHHHHhcCChHHHHHHHHHHH---------------HHHhhchhhHHHHHHHHHHHHHHH
Confidence 9999988832 2223334467799999977762211 111112211 1222223333
Q ss_pred HHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch
Q 002375 650 LLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF 707 (929)
Q Consensus 650 ~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~l~p~~ 707 (929)
... .+...|...-.++.++.|+....-..-+..+++.|+..++-..++.+.+..|..
T Consensus 240 ~ld-adp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP 296 (531)
T COG3898 240 LLD-ADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHP 296 (531)
T ss_pred Hhc-CChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCCh
Confidence 322 457889999999999999999988999999999999999999999999988865
No 215
>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism]
Probab=98.05 E-value=2.3e-05 Score=78.50 Aligned_cols=97 Identities=21% Similarity=0.255 Sum_probs=84.8
Q ss_pred EEEEEcCeEEEehhHHHhccCHHHHHHhcCCCC-c-CCCCeeEecCCCCCHHHHHHHhhhhccCCCCC-CCHhHHHHHHH
Q 002375 220 VTFCVRDKEISFVRNKIASLSSPFKAMLYGGFV-E-SKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDL-FCPGIVLELLS 296 (929)
Q Consensus 220 v~~~v~~~~~~~hr~iLaa~S~~F~~m~~~~~~-e-~~~~~i~~~~~~~~~~~~~~~l~~~yt~~~~~-~~~~~~~~ll~ 296 (929)
|.+-|||+.|..++.-|.--..+|++||.+++. + ...+.|-| |=||.-|..+|+||..|.+.. -+...+.||+.
T Consensus 7 vkLnvGG~~F~Tsk~TLtk~dg~fk~m~e~~i~~~~d~s~~IFI---DRSpKHF~~ILNfmRdGdv~LPe~~kel~El~~ 83 (230)
T KOG2716|consen 7 VKLNVGGTIFKTSKSTLTKFDGFFKTMLETDIPVEKDESGCIFI---DRSPKHFDTILNFMRDGDVDLPESEKELKELLR 83 (230)
T ss_pred EEEecCCeEEEeehhhhhhhhhHHHHHhhcCCccccCCcCcEEe---cCChhHHHHHHHhhhcccccCccchHHHHHHHH
Confidence 889999999999999999999999999999874 3 33467888 669999999999999887772 45567889999
Q ss_pred HhchhChHhHHHHHHHHHHhhcC
Q 002375 297 FANRFCCEEMKSACDAHLASLVG 319 (929)
Q Consensus 297 ~A~~~~~~~l~~~C~~~l~~~~~ 319 (929)
=|..|.++.|.+.|...+.....
T Consensus 84 EA~fYlL~~Lv~~C~~~i~~~~~ 106 (230)
T KOG2716|consen 84 EAEFYLLDGLVELCQSAIARLIR 106 (230)
T ss_pred HHHHhhHHHHHHHHHHHhhhccc
Confidence 99999999999999999988765
No 216
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.03 E-value=2e-05 Score=65.57 Aligned_cols=61 Identities=20% Similarity=0.252 Sum_probs=58.9
Q ss_pred HHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch
Q 002375 647 SLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF 707 (929)
Q Consensus 647 g~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~l~p~~ 707 (929)
..+|...+++++|+..+++++..+|+++..+..+|.++..+|++++|+..++++++..|+.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~ 62 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDD 62 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCc
Confidence 5678999999999999999999999999999999999999999999999999999999988
No 217
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.97 E-value=2.5e-05 Score=85.54 Aligned_cols=69 Identities=12% Similarity=-0.017 Sum_probs=66.4
Q ss_pred cCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHH---HHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 002375 635 NDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHER---LVYEGWILYDTGHREEALSRAEKSISI 703 (929)
Q Consensus 635 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~---~~~lg~~~~~~g~~~eA~~~~~~al~l 703 (929)
.+|+++.+++++|.+|..+|+|++|+..|+++++++|++.++ |+++|.+|..+|++++|+..+++++++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 579999999999999999999999999999999999999865 999999999999999999999999997
No 218
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.96 E-value=2.5e-05 Score=85.56 Aligned_cols=68 Identities=13% Similarity=0.033 Sum_probs=59.5
Q ss_pred cCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchH----HHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 002375 839 LDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQM----LHLRAAFYESIGDLTSAIRDSQAALCL 906 (929)
Q Consensus 839 l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~----~~~la~~~~~~g~~~~A~~~~~~al~l 906 (929)
.+|+++.+++++|.+|...|+|++|+..|+++++++|++.. ++++|.+|..+|++++|+..+++|+++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 46788889999999999999999999999999999998863 568899999999999999999999987
No 219
>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.95 E-value=6.2e-06 Score=89.72 Aligned_cols=130 Identities=15% Similarity=0.032 Sum_probs=113.0
Q ss_pred CeEEEehhHHHhccCHHHHHHhcCCCCcCCCCeeEecCCCCCHHHHHHHhhhhccCCCCCCCHhHHH---HHHHHhchhC
Q 002375 226 DKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFCPGIVL---ELLSFANRFC 302 (929)
Q Consensus 226 ~~~~~~hr~iLaa~S~~F~~m~~~~~~e~~~~~i~~~~~~~~~~~~~~~l~~~yt~~~~~~~~~~~~---~ll~~A~~~~ 302 (929)
+..+.+|+.+++++|++|++|+.....+...+.+++ .+.++..++++..|.|+..-. ...+.+. .+++.++++.
T Consensus 109 ~g~~~~~~~~~~a~~~V~~~~~~~d~~~~~~~~~~~--~d~~~~~~~~~~~F~~~~s~~-~~~~~~~~~~~~~a~~f~~~ 185 (297)
T KOG1987|consen 109 NGFLVAHKLVLVARSEVFEAMGKSDVFKESSKLITL--LEEKPEVLEALNGFQVLPSQV-SSVERIFEKHPDLAAAFKYK 185 (297)
T ss_pred CcEEEcCceEEEeeecceeeecccccchhccccccc--cccchhhHhhhceEEEeccch-HHHHHhhcCChhhhhccccc
Confidence 455999999999999999999998888777777888 899999999999999996554 3444454 8889999999
Q ss_pred hHhHHHHHHHHHHhhcCChhhHHHHHHHHHhhChHHHHHHHHHHHhh--hhhhhcCcch
Q 002375 303 CEEMKSACDAHLASLVGDIEDALILIDYGLEERATLLVASCLQVLLR--ELPSSLYNPK 359 (929)
Q Consensus 303 ~~~l~~~C~~~l~~~~~~~~n~~~~~~~a~~~~~~~L~~~c~~~i~~--~~~~~~~~~~ 359 (929)
...|+..|...|.+.+. ..++..++..+..++...+...|..++.. ++..+....+
T Consensus 186 ~~~lk~~~~~~l~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ld~l~~~~~ 243 (297)
T KOG1987|consen 186 NRHLKLACMPVLLSLIE-TLNVSQSLQEASNYDLKEAKSALTYVIAAGFKLDWLEKKLN 243 (297)
T ss_pred cHHHHHHHHHHHHHHHH-hhhhcccHHHhchhHHHHHHHHHHHHHhccchHhHHHHHHH
Confidence 99999999999999999 99999999999999999999999999987 6655554333
No 220
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.94 E-value=0.00085 Score=63.92 Aligned_cols=145 Identities=11% Similarity=0.038 Sum_probs=81.9
Q ss_pred HHHHHHHHHHhcccCCHhHHHHHHHHHHHhccHHHHHHHHHHHHh-hcCCchhhhccccHHHHHHHHHHhhcccchHHHH
Q 002375 532 RAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLA-LESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCW 610 (929)
Q Consensus 532 ~~A~~~~~~al~~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~al~-~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~ 610 (929)
+.+.....+.++..|.....+.+|.....+|++.||...|++++. +.-+++ ..+.-++......+++..|...
T Consensus 73 ~R~~Rea~~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~------a~lLglA~Aqfa~~~~A~a~~t 146 (251)
T COG4700 73 ERHLREATEELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDA------AMLLGLAQAQFAIQEFAAAQQT 146 (251)
T ss_pred hHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCH------HHHHHHHHHHHhhccHHHHHHH
Confidence 333333444444444444555666666666666666666666654 122222 2222233333344444444322
Q ss_pred HHhhhccccccccccHHHHHHHHhcCCC--ChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcC
Q 002375 611 IKLYDRWSSVDDIGSLAVINQMLINDPG--KSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTG 688 (929)
Q Consensus 611 l~l~~~~~~~d~~~al~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g 688 (929)
+ ++..+.+|. .++.....|..+..+|++.+|...|+.++...|+ +......+..+.++|
T Consensus 147 L------------------e~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qg 207 (251)
T COG4700 147 L------------------EDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQG 207 (251)
T ss_pred H------------------HHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhc
Confidence 2 444444332 3455666777778888888888888888887777 666677777778888
Q ss_pred CHHHHHHHHHHHH
Q 002375 689 HREEALSRAEKSI 701 (929)
Q Consensus 689 ~~~eA~~~~~~al 701 (929)
+.++|..-+....
T Consensus 208 r~~ea~aq~~~v~ 220 (251)
T COG4700 208 RLREANAQYVAVV 220 (251)
T ss_pred chhHHHHHHHHHH
Confidence 7777766554443
No 221
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=97.92 E-value=0.033 Score=66.92 Aligned_cols=440 Identities=19% Similarity=0.158 Sum_probs=229.9
Q ss_pred HHHHHHHh-hcchHHHHHHHHHHHhhHHHH-hcccHHHHHHHHHHHHhcCccccHH--------HHHHHHHHhchHHHHH
Q 002375 402 VMLLERLG-ECSTERWQRMLALHQLGCVMF-EREEYKDACYYFEAAADAGHIYSLA--------GLARAKYKVGQQYSAY 471 (929)
Q Consensus 402 ~~~Le~l~-~~~~~~~~~a~~~~~lG~~~~-~~g~y~~A~~~f~~al~~~~~~~~a--------~la~~~~~~g~a~~a~ 471 (929)
+.-|+-+. .....+.+.+.+++++|.+++ ...+++.|..++++++.+....... .+++++.+.+..
T Consensus 41 i~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~---- 116 (608)
T PF10345_consen 41 IKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPK---- 116 (608)
T ss_pred HHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHH----
Confidence 34455554 556667788999999999998 7899999999999998885433221 233333333332
Q ss_pred HHHHhhhcCCCcchhhhHHHHHhhhhhHHHHHHHHHHhcCC---CChHHHH---HHHHHHHHhCCHHHHHHHHHHHhccc
Q 002375 472 KLINSIISEHKPTGWMYQERSLYNLGREKIVDLNYASELDP---TLSFPYK---YRAVAKMEEGQIRAAISEIDRIIVFK 545 (929)
Q Consensus 472 ~~~~~l~~~~~~~~~~~~~~~l~~~~~~Ai~~~~~al~l~P---~~~~a~~---~~a~~~~~~g~~~~A~~~~~~al~~~ 545 (929)
.|...++++++..- .....|. .+.......+++..|+..++.+....
T Consensus 117 ---------------------------~a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a 169 (608)
T PF10345_consen 117 ---------------------------AALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLA 169 (608)
T ss_pred ---------------------------HHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHh
Confidence 23333333333322 2222221 11222333378888988888887655
Q ss_pred C---CHhH----HHHHHHHHHHhccHHHHHHHHHHHHhhcCCc---h-hhhccccHHHHHHHHH--HhhcccchHHHHHH
Q 002375 546 L---SVDC----LELRAWLFIAADDYESALRDTLALLALESNY---M-MFHGRVSGDHLVKLLN--HHVRSWSPADCWIK 612 (929)
Q Consensus 546 ~---~~~~----~~~~a~~~~~~g~~~eA~~~~~~al~~~p~~---~-~~~~~~~a~~ll~~~~--~~~~~~~~A~~~l~ 612 (929)
. ++.. ....+.+....+..++++...+++....... + .-...+.++.++-.+. ...|++..+...++
T Consensus 170 ~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~ 249 (608)
T PF10345_consen 170 NQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLK 249 (608)
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3 3322 3334555566677777877777764422211 0 0111113333333332 33444445544432
Q ss_pred h-------h--h-ccccccccccHHHHH--H---------HHhcCCC---ChHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 002375 613 L-------Y--D-RWSSVDDIGSLAVIN--Q---------MLINDPG---KSFLRFRQSLLLLRLNCQKAAMRCLRLARN 668 (929)
Q Consensus 613 l-------~--~-~~~~~d~~~al~~~~--~---------al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~l~~al~ 668 (929)
. . . .|...++.+.+..-. . .+.--|. ..-.++.-|......+..++|.++++++++
T Consensus 250 ~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~ 329 (608)
T PF10345_consen 250 QLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALK 329 (608)
T ss_pred HHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHH
Confidence 2 1 1 133322222211000 0 0000010 012344556666667777788888877764
Q ss_pred cCCch--------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch-HHHHHHHHHHHhcC
Q 002375 669 HSSSE--------------------------HERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTN 721 (929)
Q Consensus 669 ~~p~~--------------------------~~~~~~lg~~~~~~g~~~eA~~~~~~al~l~p~~-~a~~~l~~~l~~~~ 721 (929)
.-.+. ....+..++...-.+++..|....+.+....... ...+
T Consensus 330 ~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~---------- 399 (608)
T PF10345_consen 330 QIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLY---------- 399 (608)
T ss_pred HHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchh----------
Confidence 31110 1123455777777888888888777666543221 0000
Q ss_pred CCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHH--------HHHcCC-ChH----HHHHHHH
Q 002375 722 LDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYI--------NALDIK-HTR----AHQGLAR 788 (929)
Q Consensus 722 ~~~~~~~~a~~~~~~Al~~~~~~l~~~~a~~~lg~~~~~~g~~~eA~~~~~--------~al~~~-~~~----a~~~la~ 788 (929)
+ .-.+..++..|..+...|+.+.|...|. .+...+ ..+ +..++..
T Consensus 400 --------------~--------~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~ 457 (608)
T PF10345_consen 400 --------------E--------SLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAI 457 (608)
T ss_pred --------------h--------hhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHH
Confidence 0 0013557888888899999999999998 333332 222 4556666
Q ss_pred HHHHhCCHHHHHHHHHHHHH-Hcc---CCHHHHHHHh-----------hcCCHHHHHHHHHHHHhcC-C------CCcHH
Q 002375 789 VYYLKNELKAAYDEMTKLLE-KAQ---YSASAFEKRS-----------EYSDREMAKNDLNMATQLD-P------LRTYP 846 (929)
Q Consensus 789 ~~~~~g~~~~A~~~~~~al~-~~p---~~~~~~~~lg-----------~~~~~~~A~~~~~~al~l~-p------~~~~~ 846 (929)
++...+........+.++++ +.| +....+...+ ..-...++...+..+++.. . ....+
T Consensus 458 I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~l~~~~ 537 (608)
T PF10345_consen 458 ILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQLLAIL 537 (608)
T ss_pred HhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccchHHHHH
Confidence 66655553332212333332 222 1111111111 1122236666666665544 1 22335
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCC---Cc--hHHH-----HHHHHHHHcCCHHHHHHHHHHHhc
Q 002375 847 YRYRAAVLMDDQKEVEAVEELSKAIAFKP---DL--QMLH-----LRAAFYESIGDLTSAIRDSQAALC 905 (929)
Q Consensus 847 ~~~la~~~~~~g~~~eA~~~l~kal~~~p---~~--~~~~-----~la~~~~~~g~~~~A~~~~~~al~ 905 (929)
+..++..++ .|+..+......++..... +. ..|. .++..+...|+.++|.....+.-.
T Consensus 538 L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 538 LNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred HHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 667777777 7777777666666654432 22 2342 346778889999999988877643
No 222
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.91 E-value=0.00021 Score=73.27 Aligned_cols=104 Identities=13% Similarity=0.008 Sum_probs=64.0
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhcccC----CHhHHHHHHHHHHHhccHHHHHHHHHHHHhhcCCchhhhccccHHHH
Q 002375 518 YKYRAVAKMEEGQIRAAISEIDRIIVFKL----SVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHL 593 (929)
Q Consensus 518 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~----~~~~~~~~a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~a~~l 593 (929)
.|..|.-++..|+|..|...|...++..| .+++++.+|.+++.+|+|++|...|..+.+..|+.+
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~----------- 212 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSP----------- 212 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCC-----------
Confidence 55556666666666666666666665555 455566666666666666666666666666555544
Q ss_pred HHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCch
Q 002375 594 VKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE 673 (929)
Q Consensus 594 l~~~~~~~~~~~~A~~~l~l~~~~~~~d~~~al~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~ 673 (929)
.-+++++.+|.+..++|+.++|...|+++++..|+.
T Consensus 213 --------------------------------------------KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t 248 (262)
T COG1729 213 --------------------------------------------KAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGT 248 (262)
T ss_pred --------------------------------------------CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCC
Confidence 234556666666666666666666666666666665
Q ss_pred HHH
Q 002375 674 HER 676 (929)
Q Consensus 674 ~~~ 676 (929)
..+
T Consensus 249 ~aA 251 (262)
T COG1729 249 DAA 251 (262)
T ss_pred HHH
Confidence 443
No 223
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.83 E-value=6e-05 Score=63.61 Aligned_cols=73 Identities=29% Similarity=0.403 Sum_probs=56.8
Q ss_pred CchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch-HHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCchhH
Q 002375 671 SSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQ 749 (929)
Q Consensus 671 p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~l~p~~-~a~~~l~~~l~~~~~~~~~~~~a~~~~~~Al~~~~~~l~~~~ 749 (929)
|+...++.++|.+|..+|++++|+..|++++++.... +.... ...
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~----------------------------------~a~ 47 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPD----------------------------------TAN 47 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHH----------------------------------HHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHH----------------------------------HHH
Confidence 4557789999999999999999999999999863211 10000 135
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHcC
Q 002375 750 ALNNLGSIYVECGKLDQAENCYINALDI 777 (929)
Q Consensus 750 a~~~lg~~~~~~g~~~eA~~~~~~al~~ 777 (929)
++.++|.++...|++++|++++++++++
T Consensus 48 ~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 48 TLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5899999999999999999999999864
No 224
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.80 E-value=0.00053 Score=61.25 Aligned_cols=106 Identities=18% Similarity=0.117 Sum_probs=88.1
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHHHHHhcCC
Q 002375 643 RFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNL 722 (929)
Q Consensus 643 ~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~l~p~~~a~~~l~~~l~~~~~ 722 (929)
+-..|..+...|+.+.|++.|.+++.+.|..+.+|++.+..+.-+|+.++|+..+++++++..+. +
T Consensus 46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-------------t- 111 (175)
T KOG4555|consen 46 LELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-------------T- 111 (175)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-------------c-
Confidence 44667788889999999999999999999999999999999999999999999999999875433 0
Q ss_pred CCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCChHHHH
Q 002375 723 DPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIKHTRAHQ 784 (929)
Q Consensus 723 ~~~~~~~a~~~~~~Al~~~~~~l~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~~~a~~ 784 (929)
...-.++...|.+|...|+-+.|...|+.+-+++.+-+..
T Consensus 112 ----------------------rtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS~FAr~ 151 (175)
T KOG4555|consen 112 ----------------------RTACQAFVQRGLLYRLLGNDDAARADFEAAAQLGSKFARE 151 (175)
T ss_pred ----------------------hHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhCCHHHHH
Confidence 0013568889999999999999999999998886654443
No 225
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.78 E-value=3.5e-05 Score=65.06 Aligned_cols=68 Identities=21% Similarity=0.158 Sum_probs=57.4
Q ss_pred CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhc----CCc---hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 002375 637 PGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNH----SSS---EHERLVYEGWILYDTGHREEALSRAEKSISIE 704 (929)
Q Consensus 637 p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~----~p~---~~~~~~~lg~~~~~~g~~~eA~~~~~~al~l~ 704 (929)
|+-+.++..+|.+|..+|++++|+.+|++++++ .++ ...++.++|.++...|++++|++++++++++.
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 344578899999999999999999999999865 222 35678999999999999999999999999864
No 226
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=97.76 E-value=3.4e-05 Score=67.77 Aligned_cols=88 Identities=17% Similarity=0.144 Sum_probs=69.9
Q ss_pred EEEEEcCeEEEehhHHHh-ccCHHHHHHhcCC---CCcCCCCeeEecCCCCCHHHHHHHhhhhcc-CCCCCCCHhHHHHH
Q 002375 220 VTFCVRDKEISFVRNKIA-SLSSPFKAMLYGG---FVESKRKTIDFSHDGVSVEGLRAVEVYTRT-SRVDLFCPGIVLEL 294 (929)
Q Consensus 220 v~~~v~~~~~~~hr~iLa-a~S~~F~~m~~~~---~~e~~~~~i~~~~~~~~~~~~~~~l~~~yt-~~~~~~~~~~~~~l 294 (929)
|+|-|||+.|.+-+..|. ....+|..||.+. ......+.+-| |-+|..|+.||+|+.+ +.++..+...+..+
T Consensus 1 V~lNVGG~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fi---DRdp~~F~~IL~ylr~~~~l~~~~~~~~~~l 77 (94)
T PF02214_consen 1 VRLNVGGTIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFI---DRDPELFEYILNYLRTGGKLPIPDEICLEEL 77 (94)
T ss_dssp EEEEETTEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEE---SS-HHHHHHHHHHHHHTSSB---TTS-HHHH
T ss_pred CEEEECCEEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEe---ccChhhhhHHHHHHhhcCccCCCCchhHHHH
Confidence 789999999999999998 5567999999875 44556678887 5699999999999999 67773335678899
Q ss_pred HHHhchhChHhH-HHHH
Q 002375 295 LSFANRFCCEEM-KSAC 310 (929)
Q Consensus 295 l~~A~~~~~~~l-~~~C 310 (929)
+.-|+.|+++.| ++.|
T Consensus 78 ~~Ea~fy~l~~l~i~~c 94 (94)
T PF02214_consen 78 LEEAEFYGLDELFIEDC 94 (94)
T ss_dssp HHHHHHHT-HHHHBHHC
T ss_pred HHHHHHcCCCccccCCC
Confidence 999999999999 7776
No 227
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription]
Probab=97.76 E-value=0.00012 Score=60.81 Aligned_cols=81 Identities=31% Similarity=0.380 Sum_probs=65.9
Q ss_pred EEEEE-cCeEEEehhHHHhccCHHHHHHhcCCCC--cCCCCeeEecCCCCCHHHHHHHhhhh-----ccCC---CCC--C
Q 002375 220 VTFCV-RDKEISFVRNKIASLSSPFKAMLYGGFV--ESKRKTIDFSHDGVSVEGLRAVEVYT-----RTSR---VDL--F 286 (929)
Q Consensus 220 v~~~v-~~~~~~~hr~iLaa~S~~F~~m~~~~~~--e~~~~~i~~~~~~~~~~~~~~~l~~~-----yt~~---~~~--~ 286 (929)
|+++- +|.+|-..|- +|.-|+-.|+||+|.+. |...++|.+ .++...++..+-+|+ ||+. ++. +
T Consensus 19 VkLvS~Ddhefiikre-~AmtSgTiraml~gpg~~se~~~n~v~f--~di~shiLeKvc~Yl~Yk~rY~~~s~eiPeF~I 95 (112)
T KOG3473|consen 19 VKLVSSDDHEFIIKRE-HAMTSGTIRAMLSGPGVFSEAEKNEVYF--RDIPSHILEKVCEYLAYKVRYTNSSTEIPEFDI 95 (112)
T ss_pred eEeecCCCcEEEEeeh-hhhhhhHHHHHHcCCccccccccceEEe--ccchHHHHHHHHHHhhheeeeccccccCCCCCC
Confidence 88877 5667766555 47789999999997655 556779999 999999999999998 7766 222 8
Q ss_pred CHhHHHHHHHHhchhCh
Q 002375 287 CPGIVLELLSFANRFCC 303 (929)
Q Consensus 287 ~~~~~~~ll~~A~~~~~ 303 (929)
++++++|||.+||.+.|
T Consensus 96 ppemaleLL~aAn~Lec 112 (112)
T KOG3473|consen 96 PPEMALELLMAANYLEC 112 (112)
T ss_pred CHHHHHHHHHHhhhhcC
Confidence 99999999999998754
No 228
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.73 E-value=0.0036 Score=62.41 Aligned_cols=198 Identities=15% Similarity=0.101 Sum_probs=103.3
Q ss_pred HHHHHHhccHHHHHHHHHHHHhhcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHh
Q 002375 555 AWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLI 634 (929)
Q Consensus 555 a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~d~~~al~~~~~al~ 634 (929)
+.+|...+++++|...+.++.+-..++..++....++...+.+......+.++..++ +++..
T Consensus 38 AvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~------------------eKAs~ 99 (308)
T KOG1585|consen 38 AVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLY------------------EKASE 99 (308)
T ss_pred HHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHH------------------HHHHH
Confidence 444455555555555555555444444433332333334444444444444443333 33322
Q ss_pred c-----CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCch------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 002375 635 N-----DPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE------HERLVYEGWILYDTGHREEALSRAEKSISI 703 (929)
Q Consensus 635 ~-----~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~------~~~~~~lg~~~~~~g~~~eA~~~~~~al~l 703 (929)
. .|+.+..-...+--.....++++|++.|++++.+-... .+.+...+.++.+..++.+|...+.+-...
T Consensus 100 lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~ 179 (308)
T KOG1585|consen 100 LYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVA 179 (308)
T ss_pred HHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhH
Confidence 2 23333333333444445567777777777776543221 334445567777777777777766654432
Q ss_pred ccchHHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC------
Q 002375 704 ERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI------ 777 (929)
Q Consensus 704 ~p~~~a~~~l~~~l~~~~~~~~~~~~a~~~~~~Al~~~~~~l~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~------ 777 (929)
.-...++ -.+...+.....+++...+|..|..+|+..-++
T Consensus 180 ~~~~~~y----------------------------------~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~s 225 (308)
T KOG1585|consen 180 ADKCDAY----------------------------------NSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKS 225 (308)
T ss_pred HHHHhhc----------------------------------ccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccCh
Confidence 2111000 011233455556667777999999999987777
Q ss_pred CChHHHHHHHHHHHHhCCHHHHHHHHHH
Q 002375 778 KHTRAHQGLARVYYLKNELKAAYDEMTK 805 (929)
Q Consensus 778 ~~~~a~~~la~~~~~~g~~~~A~~~~~~ 805 (929)
....+..+|-.. +..|+.++..+.+..
T Consensus 226 ed~r~lenLL~a-yd~gD~E~~~kvl~s 252 (308)
T KOG1585|consen 226 EDSRSLENLLTA-YDEGDIEEIKKVLSS 252 (308)
T ss_pred HHHHHHHHHHHH-hccCCHHHHHHHHcC
Confidence 123455565554 456777766665443
No 229
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.73 E-value=0.013 Score=59.02 Aligned_cols=219 Identities=15% Similarity=0.140 Sum_probs=131.1
Q ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCch------------------HH-HHHHHHHHHHHcCCHHHHHHHHHHH
Q 002375 640 SFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE------------------HE-RLVYEGWILYDTGHREEALSRAEKS 700 (929)
Q Consensus 640 ~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~------------------~~-~~~~lg~~~~~~g~~~eA~~~~~~a 700 (929)
-..|..+-.++.++...++|...+...-+.+..+ |- .....|.+....|+..+.+.-+...
T Consensus 69 lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~~L 148 (366)
T KOG2796|consen 69 LQLWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLHKL 148 (366)
T ss_pred HHHHHHHHHHHHHHhhhHHHHhhhhhhccCCCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 4566777777888888888888777665554221 11 1233467777888888888777665
Q ss_pred HhhccchHHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcCC--
Q 002375 701 ISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIK-- 778 (929)
Q Consensus 701 l~l~p~~~a~~~l~~~l~~~~~~~~~~~~a~~~~~~Al~~~~~~l~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~-- 778 (929)
...-.+. ..-.+.+..+ +..+..|++-+ ..+.+.+..++.-.|.|.-.++.+.+.++.+
T Consensus 149 ~~~V~~i-------i~~~e~~~~~---ESsv~lW~KRl---------~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e 209 (366)
T KOG2796|consen 149 KTVVSKI-------LANLEQGLAE---ESSIRLWRKRL---------GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPE 209 (366)
T ss_pred HHHHHHH-------HHHHHhccch---hhHHHHHHHHH---------HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCc
Confidence 5422111 1111111111 11222333332 3556777888888999999999999999874
Q ss_pred -ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCC------HHHHHHHh----hcCCHHHHHHHHHHHHhcCCCCcHHH
Q 002375 779 -HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYS------ASAFEKRS----EYSDREMAKNDLNMATQLDPLRTYPY 847 (929)
Q Consensus 779 -~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg----~~~~~~~A~~~~~~al~l~p~~~~~~ 847 (929)
.+.....+|++..+.|+.+.|..+++..-+.+..- ..+..+.+ -.+++..|...|.+.+..||.++.+.
T Consensus 210 ~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~ 289 (366)
T KOG2796|consen 210 QEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVAN 289 (366)
T ss_pred ccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhh
Confidence 34677889999999999999988888664332211 11111111 12455555555555555555555555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCc
Q 002375 848 RYRAAVLMDDQKEVEAVEELSKAIAFKPDL 877 (929)
Q Consensus 848 ~~la~~~~~~g~~~eA~~~l~kal~~~p~~ 877 (929)
++.|.+++-.|+..+|++.++.++...|..
T Consensus 290 NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 290 NNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 555555555566666666665555555544
No 230
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.70 E-value=0.0012 Score=65.34 Aligned_cols=164 Identities=15% Similarity=0.095 Sum_probs=110.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHcC----C----ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHH------
Q 002375 751 LNNLGSIYVECGKLDQAENCYINALDI----K----HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASA------ 816 (929)
Q Consensus 751 ~~~lg~~~~~~g~~~eA~~~~~~al~~----~----~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~------ 816 (929)
+..-|+.|...++|+.|-..|.++-+. + ....+...+.+| +.+++.+|...+++++++..+-...
T Consensus 37 ~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cy-kk~~~~eAv~cL~~aieIyt~~Grf~~aAk~ 115 (288)
T KOG1586|consen 37 YERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCY-KKVDPEEAVNCLEKAIEIYTDMGRFTMAAKH 115 (288)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHh-hccChHHHHHHHHHHHHHHHhhhHHHHHHhh
Confidence 334455555555555555555555443 1 112344444554 4558888888888888876654332
Q ss_pred HHHHh-----hcCCHHHHHHHHHHHHhcCCC------CcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHH-----
Q 002375 817 FEKRS-----EYSDREMAKNDLNMATQLDPL------RTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQML----- 880 (929)
Q Consensus 817 ~~~lg-----~~~~~~~A~~~~~~al~l~p~------~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~----- 880 (929)
+..+| .+.++++|+.+|+++-+.... .-..+...|..-...++|.+|+..|++.....-+++.+
T Consensus 116 ~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~K 195 (288)
T KOG1586|consen 116 HIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAK 195 (288)
T ss_pred hhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHH
Confidence 22333 356789999999998765442 12345556666678899999999999998776665422
Q ss_pred --HH-HHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHH
Q 002375 881 --HL-RAAFYESIGDLTSAIRDSQAALCLDPNHMETLD 915 (929)
Q Consensus 881 --~~-la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~ 915 (929)
++ -|.++....|.-.|...+++..+++|...+..+
T Consensus 196 dyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsRE 233 (288)
T KOG1586|consen 196 DYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSRE 233 (288)
T ss_pred HHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccHH
Confidence 23 388888889999999999999999999876543
No 231
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.67 E-value=0.00024 Score=67.89 Aligned_cols=84 Identities=14% Similarity=0.129 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHccCCHHHHHHHh-------hcC-------CHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCC--
Q 002375 796 LKAAYDEMTKLLEKAQYSASAFEKRS-------EYS-------DREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQK-- 859 (929)
Q Consensus 796 ~~~A~~~~~~al~~~p~~~~~~~~lg-------~~~-------~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~-- 859 (929)
++.|.+.++.....+|.+++.+.+.| ... -+++|+.-|++|+.++|+...+++++|.+|...+.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 56677777777777777777666555 111 23556666666666666666666666666654432
Q ss_pred ---------HHHHHHHHHHHHhcCCCchH
Q 002375 860 ---------EVEAVEELSKAIAFKPDLQM 879 (929)
Q Consensus 860 ---------~~eA~~~l~kal~~~p~~~~ 879 (929)
|++|..+|++|...+|+++.
T Consensus 87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne~ 115 (186)
T PF06552_consen 87 PDTAEAEEYFEKATEYFQKAVDEDPNNEL 115 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH-TT-HH
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCcHH
Confidence 34444444444445554443
No 232
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.50 E-value=0.00016 Score=79.01 Aligned_cols=100 Identities=19% Similarity=0.189 Sum_probs=77.1
Q ss_pred CCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHH-HHHHHHHHcCCHHHHHHHHHH
Q 002375 824 SDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLH-LRAAFYESIGDLTSAIRDSQA 902 (929)
Q Consensus 824 ~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~-~la~~~~~~g~~~~A~~~~~~ 902 (929)
++++.|+..|.+|++++|+.+..+-+++.++.+.+++..|+..+.++++.+|.....| .+|.+....+.+.+|+..|++
T Consensus 18 ~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~ 97 (476)
T KOG0376|consen 18 KVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALLDLEK 97 (476)
T ss_pred chHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHHHHHH
Confidence 5667777777777777787777777777788888888888888888888888776555 458888888888888888888
Q ss_pred HhccCCCCHHHHHHHHHHHhh
Q 002375 903 ALCLDPNHMETLDLYNRARDQ 923 (929)
Q Consensus 903 al~l~P~~~~a~~~~~~l~~~ 923 (929)
...+.|+++.+...+...+..
T Consensus 98 ~~~l~Pnd~~~~r~~~Ec~~~ 118 (476)
T KOG0376|consen 98 VKKLAPNDPDATRKIDECNKI 118 (476)
T ss_pred hhhcCcCcHHHHHHHHHHHHH
Confidence 888888888877766555443
No 233
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.50 E-value=0.0092 Score=65.91 Aligned_cols=251 Identities=14% Similarity=0.051 Sum_probs=145.2
Q ss_pred CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHH
Q 002375 636 DPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAY 715 (929)
Q Consensus 636 ~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~l~p~~~a~~~l~~ 715 (929)
+.+....-..+-.-..+..++++-++.-++|++++|+.+.+|..++.- ...-..+|..+|+++++..... +....
T Consensus 164 d~D~~r~Aq~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~---lg~s~ 238 (539)
T PF04184_consen 164 DTDALRPAQEIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEAS---LGKSQ 238 (539)
T ss_pred CCCccCHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHh---hchhh
Confidence 444443344455556677889999999999999999999998887753 2334688999999988765443 00000
Q ss_pred HHHhcCCCCCChHHHHHHHHHHhhchhccCch-hHHHHHHHHHHHHcCCHHHHHHHHHHHHcCC----ChHHHHHHHHHH
Q 002375 716 ILADTNLDPESSTYVIQLLEEALRCPSDGLRK-GQALNNLGSIYVECGKLDQAENCYINALDIK----HTRAHQGLARVY 790 (929)
Q Consensus 716 ~l~~~~~~~~~~~~a~~~~~~Al~~~~~~l~~-~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~----~~~a~~~la~~~ 790 (929)
.....+ ..-+.. ..+-.++ .-+...+|.+..+.|+.++|++.+...++.. .-.++.+|..++
T Consensus 239 ~~~~~g-----------~~~e~~--~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~L 305 (539)
T PF04184_consen 239 FLQHHG-----------HFWEAW--HRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEAL 305 (539)
T ss_pred hhhccc-----------chhhhh--hccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHH
Confidence 000000 000000 0011111 2455678999999999999999999998763 335889999999
Q ss_pred HHhCCHHHHHHHHHHHHHH-ccCCHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHH
Q 002375 791 YLKNELKAAYDEMTKLLEK-AQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSK 869 (929)
Q Consensus 791 ~~~g~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~k 869 (929)
...+.+.++...+.+.-+. .|+++...+..+ +--++.+-+ ...++.-..+|..- --..|++.+.+
T Consensus 306 Lelq~Yad~q~lL~kYdDi~lpkSAti~YTaA--------LLkaRav~d--~fs~e~a~rRGls~----ae~~aveAi~R 371 (539)
T PF04184_consen 306 LELQAYADVQALLAKYDDISLPKSATICYTAA--------LLKARAVGD--KFSPEAASRRGLSP----AEMNAVEAIHR 371 (539)
T ss_pred HhcCCHHHHHHHHHHhccccCCchHHHHHHHH--------HHHHHhhcc--ccCchhhhhcCCCh----hHHHHHHHHHH
Confidence 9999999998888776433 244444433222 111111100 00111111111000 12347777888
Q ss_pred HHhcCCCchHHHHH-------HHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHH
Q 002375 870 AIAFKPDLQMLHLR-------AAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNR 919 (929)
Q Consensus 870 al~~~p~~~~~~~l-------a~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~ 919 (929)
|++.+|..+.+.+- -.-+.+.|| .+|+.+---.+..--+-+.|++++..
T Consensus 372 AvefNPHVp~YLLe~K~LilPPehilkrGD-SEAiaYAf~hL~hWk~veGAL~lL~~ 427 (539)
T PF04184_consen 372 AVEFNPHVPKYLLEMKSLILPPEHILKRGD-SEAIAYAFFHLQHWKRVEGALNLLHC 427 (539)
T ss_pred HHHhCCCCchhhhccCCCCCChHHhcCCCc-HHHHHHHHHHHHHHhcCHhHHHHHHH
Confidence 88888877655411 222334554 66666666666655555556555543
No 234
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.49 E-value=0.00039 Score=66.51 Aligned_cols=103 Identities=14% Similarity=0.126 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhhccch-HHHHHHHHHHHhcCCCC
Q 002375 656 QKAAMRCLRLARNHSSSEHERLVYEGWILYDTGH----------REEALSRAEKSISIERTF-EAFFLKAYILADTNLDP 724 (929)
Q Consensus 656 ~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~----------~~eA~~~~~~al~l~p~~-~a~~~l~~~l~~~~~~~ 724 (929)
++.|.+.++.....+|.+++.+++.|.++..+.+ +++|+.-|++++.++|+. ++++.+|.++...+...
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 6788888888899999999999988888877644 577888899999999999 99999999887665211
Q ss_pred CChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCChHHHHHHHH
Q 002375 725 ESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIKHTRAHQGLAR 788 (929)
Q Consensus 725 ~~~~~a~~~~~~Al~~~~~~l~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~~~a~~~la~ 788 (929)
.+... ....|++|..+|++|...+|....++.+.
T Consensus 87 ~d~~~------------------------------A~~~F~kA~~~FqkAv~~~P~ne~Y~ksL 120 (186)
T PF06552_consen 87 PDTAE------------------------------AEEYFEKATEYFQKAVDEDPNNELYRKSL 120 (186)
T ss_dssp --HHH------------------------------HHHHHHHHHHHHHHHHHH-TT-HHHHHHH
T ss_pred CChHH------------------------------HHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 11111 22335667777777777766655554443
No 235
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=97.45 E-value=0.074 Score=59.49 Aligned_cols=104 Identities=19% Similarity=0.186 Sum_probs=91.7
Q ss_pred hcCCHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHH-HHHHHHHHcCCHHHHHHH
Q 002375 822 EYSDREMAKNDLNMATQLDPL-RTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLH-LRAAFYESIGDLTSAIRD 899 (929)
Q Consensus 822 ~~~~~~~A~~~~~~al~l~p~-~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~-~la~~~~~~g~~~~A~~~ 899 (929)
..|+...|++++..|+...|. ......++|.++...|-..+|-..+.+++.+....+..+ .+|..|..+.+.++|++.
T Consensus 619 ~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~ 698 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEA 698 (886)
T ss_pred ecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHH
Confidence 358999999999999999994 445678999999999999999999999999996666655 569999999999999999
Q ss_pred HHHHhccCCCCHHHHHHHHHHHhhhh
Q 002375 900 SQAALCLDPNHMETLDLYNRARDQAS 925 (929)
Q Consensus 900 ~~~al~l~P~~~~a~~~~~~l~~~~~ 925 (929)
|++|++++|++++..+.+.+|.-+.+
T Consensus 699 ~~~a~~~~~~~~~~~~~l~~i~c~~~ 724 (886)
T KOG4507|consen 699 FRQALKLTTKCPECENSLKLIRCMQF 724 (886)
T ss_pred HHHHHhcCCCChhhHHHHHHHHHhhh
Confidence 99999999999999998888876544
No 236
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.41 E-value=0.013 Score=63.90 Aligned_cols=171 Identities=16% Similarity=0.084 Sum_probs=123.5
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHcC------CChHHHHHHHHHHHH---hCCHHHHHHHHHH-HHHHccCCHHHH
Q 002375 748 GQALNNLGSIYVECGKLDQAENCYINALDI------KHTRAHQGLARVYYL---KNELKAAYDEMTK-LLEKAQYSASAF 817 (929)
Q Consensus 748 ~~a~~~lg~~~~~~g~~~eA~~~~~~al~~------~~~~a~~~la~~~~~---~g~~~~A~~~~~~-al~~~p~~~~~~ 817 (929)
++...++-..|....+|+.-+...+..-.+ ..+...+.+|.++.+ .|+.++|++.+.. +....+.+++++
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~ 220 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL 220 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence 455667777899999999999888877666 345677888888888 8999999999999 445566778887
Q ss_pred HHHhh-------------cCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHH-h------cC---
Q 002375 818 EKRSE-------------YSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAI-A------FK--- 874 (929)
Q Consensus 818 ~~lg~-------------~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal-~------~~--- 874 (929)
...|. ....++|+..|.++.+++| +.+.-.+++.++...|.-.+....+++.. . ..
T Consensus 221 gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~-~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~ 299 (374)
T PF13281_consen 221 GLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEP-DYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSL 299 (374)
T ss_pred HHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCc-cccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccc
Confidence 77771 1246899999999999996 56666778888887775444433333322 1 11
Q ss_pred CCchHHH---HHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHH
Q 002375 875 PDLQMLH---LRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNR 919 (929)
Q Consensus 875 p~~~~~~---~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~ 919 (929)
.....++ .++.+..-.||+++|.+.+++++++.|...+.......
T Consensus 300 ~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~l~St~~n 347 (374)
T PF13281_consen 300 EKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWELESTLEN 347 (374)
T ss_pred cccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchhHHHHHHH
Confidence 1122333 55777778999999999999999998876554433333
No 237
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.40 E-value=0.00014 Score=50.03 Aligned_cols=33 Identities=27% Similarity=0.298 Sum_probs=31.1
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHH
Q 002375 503 DLNYASELDPTLSFPYKYRAVAKMEEGQIRAAI 535 (929)
Q Consensus 503 ~~~~al~l~P~~~~a~~~~a~~~~~~g~~~~A~ 535 (929)
+|++||+++|+++.+|+++|.+|...|++++|+
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 378999999999999999999999999999986
No 238
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.39 E-value=0.0028 Score=68.90 Aligned_cols=248 Identities=17% Similarity=0.076 Sum_probs=146.3
Q ss_pred ChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccCC------HhHHHHHHHHHHHhccHHHHHHHHHHHHhh---cCCchhh
Q 002375 514 LSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS------VDCLELRAWLFIAADDYESALRDTLALLAL---ESNYMMF 584 (929)
Q Consensus 514 ~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~~------~~~~~~~a~~~~~~g~~~eA~~~~~~al~~---~p~~~~~ 584 (929)
....+++.|.+++...++..|+.........-.. ...-...-..+....+.++|+.+..-.-++ .....
T Consensus 99 ~t~~~yn~aVi~yh~~~~g~a~~~~~~lv~r~e~le~~~aa~v~~l~~~l~~~t~q~e~al~~l~vL~~~~~~~~~~~-- 176 (696)
T KOG2471|consen 99 GTVMDYNFAVIFYHHEENGSAMQLSSNLVSRTESLESSSAASVTLLSDLLAAETSQCEEALDYLNVLAEIEAEKRMKL-- 176 (696)
T ss_pred chHHhhhhheeeeeHhhcchHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc--
Confidence 3567888999999999999998877665533221 111233344455556666776554332221 11111
Q ss_pred hccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHH
Q 002375 585 HGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLR 664 (929)
Q Consensus 585 ~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~d~~~al~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~ 664 (929)
...+.-+......+....| +.......-...+....-..|....+...+....+
T Consensus 177 ----~gn~~~~nn~~kt~s~~aA----------------------e~s~~~a~~k~~~~~ykVr~llq~~~Lk~~krevK 230 (696)
T KOG2471|consen 177 ----VGNHIPANNLLKTLSPSAA----------------------ERSFSTADLKLELQLYKVRFLLQTRNLKLAKREVK 230 (696)
T ss_pred ----cccccchhhhcccCCcchh----------------------cccchhhccchhhhHhhHHHHHHHHHHHHHHHhhh
Confidence 0000000000111111111 11111111122233344455677778888888888
Q ss_pred HHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHH-hhccchHHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhc
Q 002375 665 LARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSI-SIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSD 743 (929)
Q Consensus 665 ~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al-~l~p~~~a~~~l~~~l~~~~~~~~~~~~a~~~~~~Al~~~~~ 743 (929)
.+.....+.+.+....+..++..|++.+|.+.+...- ...|... ..+ .+.
T Consensus 231 ~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~--------------~T~-------q~~-------- 281 (696)
T KOG2471|consen 231 HVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGT--------------ITP-------QLS-------- 281 (696)
T ss_pred hhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCcc--------------ccc-------hhh--------
Confidence 8888888889999999999999999999998875431 1111110 000 000
Q ss_pred cCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC--------------------CChHHHHHHHHHHHHhCCHHHHHHHH
Q 002375 744 GLRKGQALNNLGSIYVECGKLDQAENCYINALDI--------------------KHTRAHQGLARVYYLKNELKAAYDEM 803 (929)
Q Consensus 744 ~l~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~--------------------~~~~a~~~la~~~~~~g~~~~A~~~~ 803 (929)
....|+++|.+++..|.|.-+..+|.+|++. ..-...|+.|..|...|++-.|.+.|
T Consensus 282 ---~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf 358 (696)
T KOG2471|consen 282 ---SCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCF 358 (696)
T ss_pred ---hheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHH
Confidence 1234677888888888888888888887751 01146778888888888888888888
Q ss_pred HHHHHHccCCHHHHHHHh
Q 002375 804 TKLLEKAQYSASAFEKRS 821 (929)
Q Consensus 804 ~~al~~~p~~~~~~~~lg 821 (929)
.++......++..|..++
T Consensus 359 ~~av~vfh~nPrlWLRlA 376 (696)
T KOG2471|consen 359 QKAVHVFHRNPRLWLRLA 376 (696)
T ss_pred HHHHHHHhcCcHHHHHHH
Confidence 888888878888877776
No 239
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.38 E-value=0.11 Score=51.74 Aligned_cols=179 Identities=16% Similarity=0.083 Sum_probs=104.5
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhc----CC-ch-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHH
Q 002375 641 FLRFRQSLLLLRLNCQKAAMRCLRLARNH----SS-SE-HERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKA 714 (929)
Q Consensus 641 ~~~~~lg~~~~~~g~~~~A~~~l~~al~~----~p-~~-~~~~~~lg~~~~~~g~~~eA~~~~~~al~l~p~~~a~~~l~ 714 (929)
+++..-|..|....++..|=..|-++-+. +. ++ ...+...+.+| +.++.++|+.++++++++..+.
T Consensus 35 dl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cy-kk~~~~eAv~cL~~aieIyt~~------- 106 (288)
T KOG1586|consen 35 ELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCY-KKVDPEEAVNCLEKAIEIYTDM------- 106 (288)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHh-hccChHHHHHHHHHHHHHHHhh-------
Confidence 34455566666666677666666666432 11 11 33344444444 4457888888888887765433
Q ss_pred HHHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHc-CCHHHHHHHHHHHHcC---CC-----hHHHHH
Q 002375 715 YILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVEC-GKLDQAENCYINALDI---KH-----TRAHQG 785 (929)
Q Consensus 715 ~~l~~~~~~~~~~~~a~~~~~~Al~~~~~~l~~~~a~~~lg~~~~~~-g~~~eA~~~~~~al~~---~~-----~~a~~~ 785 (929)
| ++..| +..+..+|.+|... .++++|+.+|+++-+. .. ...+..
T Consensus 107 ------G-----------rf~~a----------Ak~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lK 159 (288)
T KOG1586|consen 107 ------G-----------RFTMA----------AKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLK 159 (288)
T ss_pred ------h-----------HHHHH----------HhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHH
Confidence 1 22222 23356678887665 8899999999998776 11 124555
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHH
Q 002375 786 LARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVE 865 (929)
Q Consensus 786 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~ 865 (929)
.|..-...++|.+|++.|++.....-++...-+.. -..++.-|.+++-..+.-.+..
T Consensus 160 vA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~-----------------------KdyflkAgLChl~~~D~v~a~~ 216 (288)
T KOG1586|consen 160 VAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSA-----------------------KDYFLKAGLCHLCKADEVNAQR 216 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHH-----------------------HHHHHHHHHHhHhcccHHHHHH
Confidence 66666777888888888888776544443221100 1122334445555566666666
Q ss_pred HHHHHHhcCCCc
Q 002375 866 ELSKAIAFKPDL 877 (929)
Q Consensus 866 ~l~kal~~~p~~ 877 (929)
.+++..+++|..
T Consensus 217 ALeky~~~dP~F 228 (288)
T KOG1586|consen 217 ALEKYQELDPAF 228 (288)
T ss_pred HHHHHHhcCCcc
Confidence 666666667755
No 240
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.35 E-value=0.01 Score=59.85 Aligned_cols=138 Identities=12% Similarity=0.062 Sum_probs=95.4
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhc-CCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHH
Q 002375 552 ELRAWLFIAADDYESALRDTLALLALE-SNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVIN 630 (929)
Q Consensus 552 ~~~a~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~d~~~al~~~~ 630 (929)
+.+..++.-.|.|.-.+..+.++++.+ |..+ ....-+|.+..+.|+.+.|..+++..+ .-.
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p------~L~s~Lgr~~MQ~GD~k~a~~yf~~ve------------k~~ 242 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEP------QLLSGLGRISMQIGDIKTAEKYFQDVE------------KVT 242 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccH------HHHHHHHHHHHhcccHHHHHHHHHHHH------------HHH
Confidence 344455555666666666666666655 3333 233345556666666655555541111 001
Q ss_pred HHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch
Q 002375 631 QMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF 707 (929)
Q Consensus 631 ~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~l~p~~ 707 (929)
..+..-..+..+..+.+.++.-.+++..|...+.+++..+|.++.+.++.|.+++-+|+...|++..+.++...|..
T Consensus 243 ~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 243 QKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred hhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 12222234455667788888999999999999999999999999999999999999999999999999999999876
No 241
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.35 E-value=0.01 Score=59.26 Aligned_cols=163 Identities=14% Similarity=0.090 Sum_probs=99.0
Q ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCch------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch------
Q 002375 640 SFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE------HERLVYEGWILYDTGHREEALSRAEKSISIERTF------ 707 (929)
Q Consensus 640 ~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~------~~~~~~lg~~~~~~g~~~eA~~~~~~al~l~p~~------ 707 (929)
+..|...+..|...++|++|..++.++.+-..++ +.++...|.+..++..+.|+..+|+++..+.-.+
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtA 110 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTA 110 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchH
Confidence 4567777888999999999999999998554333 3456667888888999999999999998875333
Q ss_pred -HHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCch---hHHHHHHHHHHHHcCCHHHHHHHHHHHHcC------
Q 002375 708 -EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRK---GQALNNLGSIYVECGKLDQAENCYINALDI------ 777 (929)
Q Consensus 708 -~a~~~l~~~l~~~~~~~~~~~~a~~~~~~Al~~~~~~l~~---~~a~~~lg~~~~~~g~~~eA~~~~~~al~~------ 777 (929)
.+.-..+.. +.......+++.|.++..+++..-+. .+.+...+.++.+..++++|...+.+-..+
T Consensus 111 AmaleKAak~-----lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~ 185 (308)
T KOG1585|consen 111 AMALEKAAKA-----LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDA 185 (308)
T ss_pred HHHHHHHHHH-----hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhh
Confidence 111111111 12233445555555555555443221 245555666666666776666665554332
Q ss_pred --CChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 002375 778 --KHTRAHQGLARVYYLKNELKAAYDEMTKLL 807 (929)
Q Consensus 778 --~~~~a~~~la~~~~~~g~~~~A~~~~~~al 807 (929)
.....+.....+|....++..|...++..-
T Consensus 186 y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~ 217 (308)
T KOG1585|consen 186 YNSQCKAYVAAILVYLYAHDYVQAEKCYRDCS 217 (308)
T ss_pred cccHHHHHHHHHHHHhhHHHHHHHHHHhcchh
Confidence 111234444455555556666666665544
No 242
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.34 E-value=0.00044 Score=50.90 Aligned_cols=42 Identities=19% Similarity=0.014 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHH
Q 002375 641 FLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGW 682 (929)
Q Consensus 641 ~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~ 682 (929)
.+++.+|..|..+|++++|++.|+++++.+|+++.+|..+|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 466777777777777777777777777777777777777664
No 243
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=97.33 E-value=0.47 Score=57.05 Aligned_cols=84 Identities=14% Similarity=0.065 Sum_probs=49.4
Q ss_pred hhhHHHHHHHHHHhc-CCC---ChHHHHHHHHHHH-HhCCHHHHHHHHHHHhcccCCHh-------HHHHHHHHHHHhcc
Q 002375 496 LGREKIVDLNYASEL-DPT---LSFPYKYRAVAKM-EEGQIRAAISEIDRIIVFKLSVD-------CLELRAWLFIAADD 563 (929)
Q Consensus 496 ~~~~Ai~~~~~al~l-~P~---~~~a~~~~a~~~~-~~g~~~~A~~~~~~al~~~~~~~-------~~~~~a~~~~~~g~ 563 (929)
.-..|+.+++-+++. .+. .+.+++.+|.+++ +..+++.|...+++++.+...+. +...++.++.+.+.
T Consensus 36 LI~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~ 115 (608)
T PF10345_consen 36 LIATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNP 115 (608)
T ss_pred HHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCH
Confidence 444777777777742 111 2345666777666 66777777777777765443211 23445555555555
Q ss_pred HHHHHHHHHHHHhhcCC
Q 002375 564 YESALRDTLALLALESN 580 (929)
Q Consensus 564 ~~eA~~~~~~al~~~p~ 580 (929)
.. |....++.++...+
T Consensus 116 ~~-a~~~l~~~I~~~~~ 131 (608)
T PF10345_consen 116 KA-ALKNLDKAIEDSET 131 (608)
T ss_pred HH-HHHHHHHHHHHHhc
Confidence 55 66666666665544
No 244
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.32 E-value=0.00046 Score=50.79 Aligned_cols=40 Identities=28% Similarity=0.297 Sum_probs=31.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHH
Q 002375 880 LHLRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNR 919 (929)
Q Consensus 880 ~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~ 919 (929)
++.+|.+|..+|++++|++.|+++++.+|++++++..+++
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 4466888888888888888888888888888888877664
No 245
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.31 E-value=0.0023 Score=63.65 Aligned_cols=120 Identities=18% Similarity=0.174 Sum_probs=85.1
Q ss_pred HHHHHHhhHHHHhcccHHHHHHHHHHHHhcCccccHHHHHHHHHHhchHHHHHHHHHhhhcCCCcchhhhHHHHHhhhhh
Q 002375 419 MLALHQLGCVMFEREEYKDACYYFEAAADAGHIYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNLGR 498 (929)
Q Consensus 419 a~~~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~~~a~la~~~~~~g~a~~a~~~~~~l~~~~~~~~~~~~~~~l~~~~~ 498 (929)
..++++.|+-+++.|+|.+|...|..|+..-.. + .+..++....|
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~---------L--------------~lkEkP~e~eW------------ 222 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRN---------L--------------QLKEKPGEPEW------------ 222 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHH---------H--------------HhccCCCChHH------------
Confidence 457889999999999999999999998754100 0 00111111122
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccC-CHhHHHHHHHHHHHhccHHHHHHHHHHHHhh
Q 002375 499 EKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLALLAL 577 (929)
Q Consensus 499 ~Ai~~~~~al~l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~~g~~~eA~~~~~~al~~ 577 (929)
++++......+.+.+.|+...|+|-++++....++...| +..+++.+|..+...=+.++|.+.|.+++++
T Consensus 223 ---------~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 223 ---------LELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred ---------HHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 222333345667778888888888888888888887777 7777888888888888888888888888888
Q ss_pred cCCch
Q 002375 578 ESNYM 582 (929)
Q Consensus 578 ~p~~~ 582 (929)
+|.-.
T Consensus 294 dpsla 298 (329)
T KOG0545|consen 294 DPSLA 298 (329)
T ss_pred ChhhH
Confidence 87665
No 246
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.26 E-value=0.45 Score=52.19 Aligned_cols=53 Identities=15% Similarity=-0.046 Sum_probs=44.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002375 851 AAVLMDDQKEVEAVEELSKAIAFKPDLQMLHLRAAFYESIGDLTSAIRDSQAA 903 (929)
Q Consensus 851 a~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~a 903 (929)
|..++..|+|.++.-+-.-..++.|+...+.++|.+.....+|++|..++...
T Consensus 469 AEyLysqgey~kc~~ys~WL~~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 469 AEYLYSQGEYHKCYLYSSWLTKIAPSPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHhcccHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 34567889999999988888899996667778899999999999999887654
No 247
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.25 E-value=0.46 Score=56.73 Aligned_cols=230 Identities=14% Similarity=0.057 Sum_probs=153.8
Q ss_pred CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHHH
Q 002375 637 PGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYI 716 (929)
Q Consensus 637 p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~l~p~~~a~~~l~~~ 716 (929)
-+.+.+|..+|.+.+..|...+|++.|-++ +++..+.....+..+.|+|++-+.++..+-+.-.....-..+..+
T Consensus 1101 ~n~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~A 1175 (1666)
T KOG0985|consen 1101 CNEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFA 1175 (1666)
T ss_pred hCChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHH
Confidence 456889999999999999999999999764 567788888899999999999999998887654444222334445
Q ss_pred HHhcCCCCCChHHHHHHHHHHhhchhccCchh-HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhCC
Q 002375 717 LADTNLDPESSTYVIQLLEEALRCPSDGLRKG-QALNNLGSIYVECGKLDQAENCYINALDIKHTRAHQGLARVYYLKNE 795 (929)
Q Consensus 717 l~~~~~~~~~~~~a~~~~~~Al~~~~~~l~~~-~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~~~a~~~la~~~~~~g~ 795 (929)
|+..+ .+..+++-+. .|. .-.-..|.-.+..|.|+.|.-+|... .-|..++..+..+|+
T Consensus 1176 yAkt~--------rl~elE~fi~------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v------SN~a~La~TLV~Lge 1235 (1666)
T KOG0985|consen 1176 YAKTN--------RLTELEEFIA------GPNVANIQQVGDRCFEEKMYEAAKLLYSNV------SNFAKLASTLVYLGE 1235 (1666)
T ss_pred HHHhc--------hHHHHHHHhc------CCCchhHHHHhHHHhhhhhhHHHHHHHHHh------hhHHHHHHHHHHHHH
Confidence 55444 0112222221 111 22455788888899999998888643 457888999999999
Q ss_pred HHHHHHHHHHHHHHccCCHHHHHHHh----hcCCHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 002375 796 LKAAYDEMTKLLEKAQYSASAFEKRS----EYSDREMAKNDLNMATQLDP-LRTYPYRYRAAVLMDDQKEVEAVEELSKA 870 (929)
Q Consensus 796 ~~~A~~~~~~al~~~p~~~~~~~~lg----~~~~~~~A~~~~~~al~l~p-~~~~~~~~la~~~~~~g~~~eA~~~l~ka 870 (929)
|..|.+..+++ ++...|-..+ ..+++.-|.- ..++- -.++-+-.+...|...|-+++-+..++.+
T Consensus 1236 yQ~AVD~aRKA-----ns~ktWK~VcfaCvd~~EFrlAQi-----CGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~ 1305 (1666)
T KOG0985|consen 1236 YQGAVDAARKA-----NSTKTWKEVCFACVDKEEFRLAQI-----CGLNIIVHADELEELIEYYQDRGYFEELISLLEAG 1305 (1666)
T ss_pred HHHHHHHhhhc-----cchhHHHHHHHHHhchhhhhHHHh-----cCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhh
Confidence 99999987776 4445555444 1122222211 11111 13344566778899999999999999999
Q ss_pred HhcCCCchHHH-HHHHHHHHcCCHHHHHHHHHH
Q 002375 871 IAFKPDLQMLH-LRAAFYESIGDLTSAIRDSQA 902 (929)
Q Consensus 871 l~~~p~~~~~~-~la~~~~~~g~~~~A~~~~~~ 902 (929)
+.+...+-..+ -+|..|.+ =++++-.++++-
T Consensus 1306 LGLERAHMgmfTELaiLYsk-ykp~km~EHl~L 1337 (1666)
T KOG0985|consen 1306 LGLERAHMGMFTELAILYSK-YKPEKMMEHLKL 1337 (1666)
T ss_pred hchhHHHHHHHHHHHHHHHh-cCHHHHHHHHHH
Confidence 88876665444 55666654 345555555443
No 248
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.22 E-value=0.0016 Score=64.66 Aligned_cols=82 Identities=20% Similarity=0.186 Sum_probs=60.2
Q ss_pred CHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHH-HHHHHHHHcCCHHHHHHHHHHH
Q 002375 825 DREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLH-LRAAFYESIGDLTSAIRDSQAA 903 (929)
Q Consensus 825 ~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~-~la~~~~~~g~~~~A~~~~~~a 903 (929)
.++.|+.+|.+++.++|+.+..|.+.+.++++.++++.+.....+++++.|+....+ .+|.+......+++|+..+.+|
T Consensus 25 ~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra 104 (284)
T KOG4642|consen 25 RYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRA 104 (284)
T ss_pred hhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 456677777777777777777777777777777777777777777777777776544 5677777777777777777777
Q ss_pred hcc
Q 002375 904 LCL 906 (929)
Q Consensus 904 l~l 906 (929)
..+
T Consensus 105 ~sl 107 (284)
T KOG4642|consen 105 YSL 107 (284)
T ss_pred HHH
Confidence 554
No 249
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.21 E-value=0.00027 Score=48.53 Aligned_cols=32 Identities=22% Similarity=0.319 Sum_probs=28.2
Q ss_pred HHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHH
Q 002375 833 LNMATQLDPLRTYPYRYRAAVLMDDQKEVEAV 864 (929)
Q Consensus 833 ~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~ 864 (929)
|+++++++|+++.+|+++|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 67888889999999999999999999988886
No 250
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.20 E-value=0.027 Score=54.75 Aligned_cols=65 Identities=20% Similarity=0.099 Sum_probs=38.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHH
Q 002375 848 RYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLHLRAAFYESIGDLTSAIRDSQAALCLDPNHME 912 (929)
Q Consensus 848 ~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~ 912 (929)
..+|.+..++|++++|+..+.....-.=.......+|.++...|+.++|+..|+++++.+++.+.
T Consensus 130 lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~~ 194 (207)
T COG2976 130 LRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESDASPAA 194 (207)
T ss_pred HHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChHH
Confidence 34566666677777776666543221111112235677777777777777777777777655443
No 251
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.18 E-value=0.1 Score=60.33 Aligned_cols=154 Identities=16% Similarity=-0.003 Sum_probs=111.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHcCCChH---------HHHHHHHHHH----HhCCHHHHHHHHHHHHHHccCCHHHHHHH
Q 002375 754 LGSIYVECGKLDQAENCYINALDIKHTR---------AHQGLARVYY----LKNELKAAYDEMTKLLEKAQYSASAFEKR 820 (929)
Q Consensus 754 lg~~~~~~g~~~eA~~~~~~al~~~~~~---------a~~~la~~~~----~~g~~~~A~~~~~~al~~~p~~~~~~~~l 820 (929)
+-.+.--.|+-+.++..+.++.+..... .++....... .....+.|.+.+....+..|+........
T Consensus 194 ll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~ 273 (468)
T PF10300_consen 194 LLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFE 273 (468)
T ss_pred HHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 3344445678888888888877752221 1111111111 23457788888888888889888777777
Q ss_pred h----hcCCHHHHHHHHHHHHhcCCC----CcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHH--HHHHHHHHc
Q 002375 821 S----EYSDREMAKNDLNMATQLDPL----RTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLH--LRAAFYESI 890 (929)
Q Consensus 821 g----~~~~~~~A~~~~~~al~l~p~----~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~--~la~~~~~~ 890 (929)
| ..|+.++|++.|++++..... ..-.++.+|+++.-+++|++|...+.+..+.+.-....| ..|.++...
T Consensus 274 gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l 353 (468)
T PF10300_consen 274 GRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLML 353 (468)
T ss_pred HHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhh
Confidence 7 458889999999988753332 334678999999999999999999999999877766555 559999999
Q ss_pred CCH-------HHHHHHHHHHhccC
Q 002375 891 GDL-------TSAIRDSQAALCLD 907 (929)
Q Consensus 891 g~~-------~~A~~~~~~al~l~ 907 (929)
|+. ++|.+.|+++-.+-
T Consensus 354 ~~~~~~~~~~~~a~~l~~~vp~l~ 377 (468)
T PF10300_consen 354 GREEEAKEHKKEAEELFRKVPKLK 377 (468)
T ss_pred ccchhhhhhHHHHHHHHHHHHHHH
Confidence 999 88888888876553
No 252
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.17 E-value=0.0035 Score=67.21 Aligned_cols=139 Identities=16% Similarity=0.062 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHcCC--ChHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHccCCHHHHHHHhhcCCH
Q 002375 750 ALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYL-KNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDR 826 (929)
Q Consensus 750 a~~~lg~~~~~~g~~~eA~~~~~~al~~~--~~~a~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 826 (929)
+|..+.....+.+..+.|...|.+|.+.. ...+|...|.+.+. .++.+.|...|+.++
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~gl------------------- 63 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGL------------------- 63 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHH-------------------
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHH-------------------
Confidence 34444455555555555666666655442 23455555555444 233333555555554
Q ss_pred HHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCch---HHH-HHHHHHHHcCCHHHHHHHHHH
Q 002375 827 EMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQ---MLH-LRAAFYESIGDLTSAIRDSQA 902 (929)
Q Consensus 827 ~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~---~~~-~la~~~~~~g~~~~A~~~~~~ 902 (929)
+..|.+...|......+...++.+.|...|++++..-|... .++ ....+-...|+.+.....+++
T Consensus 64 -----------k~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R 132 (280)
T PF05843_consen 64 -----------KKFPSDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKR 132 (280)
T ss_dssp -----------HHHTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHH
T ss_pred -----------HHCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 44555555566666677777777888888888877666554 222 346666667888888888888
Q ss_pred HhccCCCCHHHHHHHH
Q 002375 903 ALCLDPNHMETLDLYN 918 (929)
Q Consensus 903 al~l~P~~~~a~~~~~ 918 (929)
+.+..|++........
T Consensus 133 ~~~~~~~~~~~~~f~~ 148 (280)
T PF05843_consen 133 AEELFPEDNSLELFSD 148 (280)
T ss_dssp HHHHTTTS-HHHHHHC
T ss_pred HHHHhhhhhHHHHHHH
Confidence 8888777665554443
No 253
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.14 E-value=0.027 Score=58.77 Aligned_cols=158 Identities=15% Similarity=0.041 Sum_probs=118.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHcCCChH--HHHHHHHHHHHhCCHHHHHHHHHHHHHH-ccCCHHHHHH-----Hh--hc
Q 002375 754 LGSIYVECGKLDQAENCYINALDIKHTR--AHQGLARVYYLKNELKAAYDEMTKLLEK-AQYSASAFEK-----RS--EY 823 (929)
Q Consensus 754 lg~~~~~~g~~~eA~~~~~~al~~~~~~--a~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~-----lg--~~ 823 (929)
-+.+....|+..+|...+++.++.-|.+ ++..--.+++..|+...-...+++.+.. +++-+-.-+. .| +.
T Consensus 109 ~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~ 188 (491)
T KOG2610|consen 109 KAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEEC 188 (491)
T ss_pred hHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHh
Confidence 3445566788999988999998875554 5555667888899999889999998877 5555322222 22 77
Q ss_pred CCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCch-----HHHHHHHHHHHcCCHHHHHH
Q 002375 824 SDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQ-----MLHLRAAFYESIGDLTSAIR 898 (929)
Q Consensus 824 ~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~-----~~~~la~~~~~~g~~~~A~~ 898 (929)
|-+++|.+.-.++++++|.+..+....+.++...+++.++.+...+.-..=.... .++.-|.++...+.++.|++
T Consensus 189 g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~ale 268 (491)
T KOG2610|consen 189 GIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALE 268 (491)
T ss_pred ccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHH
Confidence 9999999999999999999999999999999999999999999876533222221 22345888999999999999
Q ss_pred HHHHHh--ccCCCCH
Q 002375 899 DSQAAL--CLDPNHM 911 (929)
Q Consensus 899 ~~~~al--~l~P~~~ 911 (929)
.|.+-+ ++..++.
T Consensus 269 IyD~ei~k~l~k~Da 283 (491)
T KOG2610|consen 269 IYDREIWKRLEKDDA 283 (491)
T ss_pred HHHHHHHHHhhccch
Confidence 997654 3344444
No 254
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.14 E-value=0.00068 Score=46.63 Aligned_cols=34 Identities=24% Similarity=0.344 Sum_probs=30.3
Q ss_pred HHHHHHhhHHHHhcccHHHHHHHHHHHHhcCccc
Q 002375 419 MLALHQLGCVMFEREEYKDACYYFEAAADAGHIY 452 (929)
Q Consensus 419 a~~~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~ 452 (929)
+.+++.+|.+++.+|+|++|+..|+++++++|.+
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 4578999999999999999999999999999864
No 255
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.10 E-value=0.23 Score=55.36 Aligned_cols=157 Identities=16% Similarity=0.172 Sum_probs=106.1
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHcCC------ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccC-CHH----H
Q 002375 748 GQALNNLGSIYVECGKLDQAENCYINALDIK------HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQY-SAS----A 816 (929)
Q Consensus 748 ~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~------~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~----~ 816 (929)
...+...+.+....|+++.|...+.++.... .+.+....+......|+..+|+..++..+..... ... .
T Consensus 146 ~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~ 225 (352)
T PF02259_consen 146 AETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNA 225 (352)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHH
Confidence 4779999999999999999999999999874 6788889999999999999999999999873222 110 0
Q ss_pred HHHHhhcCCH----HHHHHHHHHHHhcCCCCcHHHHHHHHHHHhc------CCHHHHHHHHHHHHhcCCCchH-HHHHHH
Q 002375 817 FEKRSEYSDR----EMAKNDLNMATQLDPLRTYPYRYRAAVLMDD------QKEVEAVEELSKAIAFKPDLQM-LHLRAA 885 (929)
Q Consensus 817 ~~~lg~~~~~----~~A~~~~~~al~l~p~~~~~~~~la~~~~~~------g~~~eA~~~l~kal~~~p~~~~-~~~la~ 885 (929)
....+..... ........ ....+.++..+|...... +..++++..|.++++++|+... ++..|.
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~ 300 (352)
T PF02259_consen 226 ELKSGLLESLEVISSTNLDKES-----KELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWAL 300 (352)
T ss_pred HHhhccccccccccccchhhhh-----HHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHH
Confidence 0000000000 00000000 011235566677766666 7889999999999999987754 334455
Q ss_pred HHHHcC-----------------CHHHHHHHHHHHhccCCC
Q 002375 886 FYESIG-----------------DLTSAIRDSQAALCLDPN 909 (929)
Q Consensus 886 ~~~~~g-----------------~~~~A~~~~~~al~l~P~ 909 (929)
.+...= -...|+..|-+++...|+
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 301 FNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred HHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 444321 124599999999999998
No 256
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.09 E-value=0.037 Score=57.80 Aligned_cols=124 Identities=10% Similarity=-0.054 Sum_probs=91.7
Q ss_pred HHHHHHHhccHHHHHHHHHHHHhhcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHH
Q 002375 554 RAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQML 633 (929)
Q Consensus 554 ~a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~d~~~al~~~~~al 633 (929)
.+.+....|++.+|-..++++++..|.+. .+....-.++...|+...- ...+++.+
T Consensus 109 ~aai~~~~g~~h~a~~~wdklL~d~PtDl------la~kfsh~a~fy~G~~~~~------------------k~ai~kIi 164 (491)
T KOG2610|consen 109 KAAILWGRGKHHEAAIEWDKLLDDYPTDL------LAVKFSHDAHFYNGNQIGK------------------KNAIEKII 164 (491)
T ss_pred hHHHhhccccccHHHHHHHHHHHhCchhh------hhhhhhhhHHHhccchhhh------------------hhHHHHhc
Confidence 34555677899999999999999999988 3344444455555554433 33336666
Q ss_pred hc-CCCCh---HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002375 634 IN-DPGKS---FLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSI 701 (929)
Q Consensus 634 ~~-~p~~~---~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al 701 (929)
.. +|+.| -+.-..+..+...|-|++|.+..++++++++.+..+....+.++...|++.++.+...+.-
T Consensus 165 p~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~te 236 (491)
T KOG2610|consen 165 PKWNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTE 236 (491)
T ss_pred cccCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcc
Confidence 55 55553 3344556677888999999999999999999999999999999999999999998877643
No 257
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.07 E-value=0.0078 Score=60.04 Aligned_cols=72 Identities=21% Similarity=0.150 Sum_probs=60.5
Q ss_pred CCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHH-HHHHHHHHcCCHHHHHHHHHHHhccCCCCHHH
Q 002375 842 LRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLH-LRAAFYESIGDLTSAIRDSQAALCLDPNHMET 913 (929)
Q Consensus 842 ~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~-~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a 913 (929)
.....+.+++.+++..|+|-++++....++...|.+..++ .+|.++...=+..+|..+|.++|+++|.-..+
T Consensus 228 ~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasv 300 (329)
T KOG0545|consen 228 MITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASV 300 (329)
T ss_pred hhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHH
Confidence 3456778889999999999999999999999999887554 66888888889999999999999999975543
No 258
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=97.03 E-value=0.00046 Score=68.81 Aligned_cols=63 Identities=14% Similarity=0.155 Sum_probs=51.8
Q ss_pred EEEEEcCeEEEehhHHHhccCHHHHHHhcCCCCcCCCC--eeEecCCCCCHHHHHHHhhhhccCCCC
Q 002375 220 VTFCVRDKEISFVRNKIASLSSPFKAMLYGGFVESKRK--TIDFSHDGVSVEGLRAVEVYTRTSRVD 284 (929)
Q Consensus 220 v~~~v~~~~~~~hr~iLaa~S~~F~~m~~~~~~e~~~~--~i~~~~~~~~~~~~~~~l~~~yt~~~~ 284 (929)
|-++.....||+||++||+|||+|+.+.+.+-.-.... .|.+ -+++-.+|.++|+++|||+.-
T Consensus 133 ldiiFkeTcfpahRA~laaRCpffK~l~nsd~e~~ae~i~dik~--ag~dm~~feafLh~l~tgEfg 197 (401)
T KOG2838|consen 133 LDIIFKETCFPAHRAFLAARCPFFKILANSDEEPEAEDICDIKF--AGFDMDAFEAFLHSLITGEFG 197 (401)
T ss_pred ceeeeeeccchHHHHHHHhhCcchhhhccCCCCcchhhhhhhhh--hccChHHHHHHHHHHHhcccc
Confidence 88888888999999999999999999987542211111 4666 789999999999999999876
No 259
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.03 E-value=0.0012 Score=45.33 Aligned_cols=34 Identities=26% Similarity=0.324 Sum_probs=30.3
Q ss_pred HHHHHHhhHHHHhcccHHHHHHHHHHHHhcCccc
Q 002375 419 MLALHQLGCVMFEREEYKDACYYFEAAADAGHIY 452 (929)
Q Consensus 419 a~~~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~ 452 (929)
+.+++.+|.+++..|+|++|+.+|+++++++|.+
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 4578999999999999999999999999998864
No 260
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.02 E-value=0.031 Score=59.93 Aligned_cols=137 Identities=10% Similarity=0.036 Sum_probs=107.3
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Q 002375 641 FLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYD-TGHREEALSRAEKSISIERTFEAFFLKAYILAD 719 (929)
Q Consensus 641 ~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~-~g~~~eA~~~~~~al~l~p~~~a~~~l~~~l~~ 719 (929)
.+|..+.....+.+..+.|...|.+|++..+....+|...|.+.+. .++.+.|...|+.+++..|.+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~------------ 69 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSD------------ 69 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-------------
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCC------------
Confidence 3577777888888889999999999997777778999999999777 556666999999999988877
Q ss_pred cCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC-C----ChHHHHHHHHHHHHhC
Q 002375 720 TNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI-K----HTRAHQGLARVYYLKN 794 (929)
Q Consensus 720 ~~~~~~~~~~a~~~~~~Al~~~~~~l~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~-~----~~~a~~~la~~~~~~g 794 (929)
...|......+...|+.+.|...|++++.. . ....|......-...|
T Consensus 70 ----------------------------~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~G 121 (280)
T PF05843_consen 70 ----------------------------PDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYG 121 (280)
T ss_dssp ----------------------------HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS
T ss_pred ----------------------------HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcC
Confidence 334555566777889999999999999987 2 2347888888888999
Q ss_pred CHHHHHHHHHHHHHHccCCHHHH
Q 002375 795 ELKAAYDEMTKLLEKAQYSASAF 817 (929)
Q Consensus 795 ~~~~A~~~~~~al~~~p~~~~~~ 817 (929)
+.+...+..+++.+..|+.....
T Consensus 122 dl~~v~~v~~R~~~~~~~~~~~~ 144 (280)
T PF05843_consen 122 DLESVRKVEKRAEELFPEDNSLE 144 (280)
T ss_dssp -HHHHHHHHHHHHHHTTTS-HHH
T ss_pred CHHHHHHHHHHHHHHhhhhhHHH
Confidence 99999999999999988865543
No 261
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.02 E-value=0.1 Score=61.61 Aligned_cols=261 Identities=17% Similarity=0.039 Sum_probs=179.9
Q ss_pred CCChHHHHHHHHHHHHh-----cCHHHHHHHHHHHHhc-----CCchHHHHHHHHHHHHHcC-----CHHHHHHHHHHHH
Q 002375 637 PGKSFLRFRQSLLLLRL-----NCQKAAMRCLRLARNH-----SSSEHERLVYEGWILYDTG-----HREEALSRAEKSI 701 (929)
Q Consensus 637 p~~~~~~~~lg~~~~~~-----g~~~~A~~~l~~al~~-----~p~~~~~~~~lg~~~~~~g-----~~~eA~~~~~~al 701 (929)
-.+..+...+|.+|..- .+.+.|+.+|+.+... .-..+.+.+.+|.+|.+.. +++.|+.+|.++-
T Consensus 241 ~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA 320 (552)
T KOG1550|consen 241 LGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAA 320 (552)
T ss_pred hcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHH
Confidence 34667778888887764 5889999999998771 1114567888999998853 6788999999988
Q ss_pred hhccchHHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCch--hHHHHHHHHHHHHc----CCHHHHHHHHHHHH
Q 002375 702 SIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRK--GQALNNLGSIYVEC----GKLDQAENCYINAL 775 (929)
Q Consensus 702 ~l~p~~~a~~~l~~~l~~~~~~~~~~~~a~~~~~~Al~~~~~~l~~--~~a~~~lg~~~~~~----g~~~eA~~~~~~al 775 (929)
..... .+.+.++.++.... + ..++.+|.+.|..+.+. ..+.+.++.+|..- .+...|..+|.++.
T Consensus 321 ~~g~~-~a~~~lg~~~~~g~--~------~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA 391 (552)
T KOG1550|consen 321 ELGNP-DAQYLLGVLYETGT--K------ERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAA 391 (552)
T ss_pred hcCCc-hHHHHHHHHHHcCC--c------cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHH
Confidence 76433 45666777665443 1 12456677777666554 47888888887653 56889999999999
Q ss_pred cCCChHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHccCCH----HHHHHHh--------hcCCHHHHHHHHHHHHhcCCC
Q 002375 776 DIKHTRAHQGLARVYYLK-NELKAAYDEMTKLLEKAQYSA----SAFEKRS--------EYSDREMAKNDLNMATQLDPL 842 (929)
Q Consensus 776 ~~~~~~a~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~~----~~~~~lg--------~~~~~~~A~~~~~~al~l~p~ 842 (929)
+.+++.+.+.++..+..- +.+..+.-.+....+..-..+ ....... ...+.+.+...+.++.. ..
T Consensus 392 ~~g~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~--~g 469 (552)
T KOG1550|consen 392 EKGNPSAAYLLGAFYEYGVGRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAA--QG 469 (552)
T ss_pred HccChhhHHHHHHHHHHccccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchhHHHHHHHHHHh--cc
Confidence 998887777777665544 666666655555444322221 1111111 12344566666666544 45
Q ss_pred CcHHHHHHHHHHHhc----CCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHc---CCHHHHHHHHHHHhccCCCC
Q 002375 843 RTYPYRYRAAVLMDD----QKEVEAVEELSKAIAFKPDLQMLHLRAAFYESI---GDLTSAIRDSQAALCLDPNH 910 (929)
Q Consensus 843 ~~~~~~~la~~~~~~----g~~~eA~~~l~kal~~~p~~~~~~~la~~~~~~---g~~~~A~~~~~~al~l~P~~ 910 (929)
++.+...+|.+|..- .+++.|...|.++.... ....+++|..+..- .....|.++|.++.+.+...
T Consensus 470 ~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~--~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~~~~~ 542 (552)
T KOG1550|consen 470 NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG--AQALFNLGYMHEHGEGIKVLHLAKRYYDQASEEDSRA 542 (552)
T ss_pred CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh--hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHhcCchh
Confidence 678888899888765 36999999999998877 55667888888861 22789999999998877654
No 262
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.01 E-value=0.39 Score=48.96 Aligned_cols=216 Identities=13% Similarity=0.066 Sum_probs=127.2
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHhc-CHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHH-HHHHHHHHHHhhccch
Q 002375 630 NQMLINDPGKSFLRFRQSLLLLRLN-CQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHRE-EALSRAEKSISIERTF 707 (929)
Q Consensus 630 ~~al~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~-eA~~~~~~al~l~p~~ 707 (929)
..++..+|.+-.+|..+-.++..++ +..+-++++...++.+|.+-.+|...-.+....|++. .-++..+.++..+..+
T Consensus 67 ~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKN 146 (318)
T KOG0530|consen 67 EDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKN 146 (318)
T ss_pred HHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccc
Confidence 6777778888777776666665543 5667777888888888888888888777777777666 5556666665544333
Q ss_pred HHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCChHHHHHHH
Q 002375 708 EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIKHTRAHQGLA 787 (929)
Q Consensus 708 ~a~~~l~~~l~~~~~~~~~~~~a~~~~~~Al~~~~~~l~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~~~a~~~la 787 (929)
-.+|...-
T Consensus 147 ------------------------------------------------------------------------YHaWshRq 154 (318)
T KOG0530|consen 147 ------------------------------------------------------------------------YHAWSHRQ 154 (318)
T ss_pred ------------------------------------------------------------------------hhhhHHHH
Confidence 12333333
Q ss_pred HHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHh----h-c-----CCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHh-
Q 002375 788 RVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS----E-Y-----SDREMAKNDLNMATQLDPLRTYPYRYRAAVLMD- 856 (929)
Q Consensus 788 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg----~-~-----~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~- 856 (929)
.+...-+.++.-+.+..++++.+--|..+|..+- . . ...+.-+.+..+.+.+.|.+..+|.+|.-++..
T Consensus 155 W~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l~~d 234 (318)
T KOG0530|consen 155 WVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKDKILLVPNNESAWNYLKGLLELD 234 (318)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhc
Confidence 3334444455555555555555555555555443 1 0 123455666777788888888888888877775
Q ss_pred cC--CHHHHHHHHHHHH-hcCCCchHHH-HHHHHH------HHcCCHH---HHHHHHHHHh-ccCCCCHHHHHHH
Q 002375 857 DQ--KEVEAVEELSKAI-AFKPDLQMLH-LRAAFY------ESIGDLT---SAIRDSQAAL-CLDPNHMETLDLY 917 (929)
Q Consensus 857 ~g--~~~eA~~~l~kal-~~~p~~~~~~-~la~~~------~~~g~~~---~A~~~~~~al-~l~P~~~~a~~~~ 917 (929)
.| .+.+-.......+ ...-.+|.+. .+...| .+.+.-+ +|...|+..- +.||=....|...
T Consensus 235 ~gl~s~s~vv~f~~~l~~~~~~~sP~lla~l~d~~~e~~l~~~~~~~~~a~~a~~ly~~La~~~DpiR~nyW~~~ 309 (318)
T KOG0530|consen 235 SGLSSDSKVVSFVENLYLQLPKRSPFLLAFLLDLYAEDALAYKSSAEELARKAVKLYEDLAIKVDPIRKNYWRHK 309 (318)
T ss_pred cCCcCCchHHHHHHHHhhccCCCChhHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhhccCcHHHHHHHHH
Confidence 44 2334444444443 2222233332 222222 2234444 6777787665 7888766666655
No 263
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.00 E-value=0.034 Score=61.64 Aligned_cols=166 Identities=11% Similarity=-0.004 Sum_probs=101.5
Q ss_pred hhccccccccccHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc---------------------
Q 002375 614 YDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSS--------------------- 672 (929)
Q Consensus 614 ~~~~~~~d~~~al~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~--------------------- 672 (929)
+..|...+....++.-.+|++++|+.+.+|..++.-. ..-..+|.++|+++++....
T Consensus 176 q~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~R 253 (539)
T PF04184_consen 176 QKAWRERNPQARIKAAKEALEINPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRR 253 (539)
T ss_pred HHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhcc
Confidence 4455555555567777999999999999998877532 22345666666666543110
Q ss_pred h----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCchh
Q 002375 673 E----HERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG 748 (929)
Q Consensus 673 ~----~~~~~~lg~~~~~~g~~~eA~~~~~~al~l~p~~~a~~~l~~~l~~~~~~~~~~~~a~~~~~~Al~~~~~~l~~~ 748 (929)
+ ..+...+|.+..+.|+.+||++.++..++..|... ..
T Consensus 254 dt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~--------------------------------------~l 295 (539)
T PF04184_consen 254 DTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLD--------------------------------------NL 295 (539)
T ss_pred ccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccc--------------------------------------hh
Confidence 0 23446789999999999999999999998877530 01
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHcC---CChHHHHHHHHHH-------------HHhCC---HHHHHHHHHHHHHH
Q 002375 749 QALNNLGSIYVECGKLDQAENCYINALDI---KHTRAHQGLARVY-------------YLKNE---LKAAYDEMTKLLEK 809 (929)
Q Consensus 749 ~a~~~lg~~~~~~g~~~eA~~~~~~al~~---~~~~a~~~la~~~-------------~~~g~---~~~A~~~~~~al~~ 809 (929)
.+..+|..++...+.|.++...+.+--++ +.....+..|.+. .+.|- -..|.+.+.+|++.
T Consensus 296 ~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvef 375 (539)
T PF04184_consen 296 NIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEF 375 (539)
T ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHh
Confidence 23556666666667777666666654333 1111122222211 11111 12466777888888
Q ss_pred ccCCHHHHHH
Q 002375 810 AQYSASAFEK 819 (929)
Q Consensus 810 ~p~~~~~~~~ 819 (929)
+|-.+..+..
T Consensus 376 NPHVp~YLLe 385 (539)
T PF04184_consen 376 NPHVPKYLLE 385 (539)
T ss_pred CCCCchhhhc
Confidence 8877665443
No 264
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.00 E-value=0.0027 Score=66.11 Aligned_cols=101 Identities=20% Similarity=0.202 Sum_probs=61.2
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHH
Q 002375 783 HQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVE 862 (929)
Q Consensus 783 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~e 862 (929)
+-.-|+-|++..+|..|...|.+.+.....++++ ++..|.++|.+....|+|..
T Consensus 84 ~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dl--------------------------navLY~NRAAa~~~l~NyRs 137 (390)
T KOG0551|consen 84 YKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDL--------------------------NAVLYTNRAAAQLYLGNYRS 137 (390)
T ss_pred HHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccH--------------------------HHHHHhhHHHHHHHHHHHHH
Confidence 4445777888888888888888888776555443 23345555555555566666
Q ss_pred HHHHHHHHHhcCCCchHHHHH-HHHHHHcCCHHHHHHHHHHHhccCCC
Q 002375 863 AVEELSKAIAFKPDLQMLHLR-AAFYESIGDLTSAIRDSQAALCLDPN 909 (929)
Q Consensus 863 A~~~l~kal~~~p~~~~~~~l-a~~~~~~g~~~~A~~~~~~al~l~P~ 909 (929)
|+....+++.++|.+.-.+.+ |.++..+..+.+|..+++..++++-+
T Consensus 138 ~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e 185 (390)
T KOG0551|consen 138 ALNDCSAALKLKPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDDE 185 (390)
T ss_pred HHHHHHHHHhcCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 666666666666665544444 55555566655555555555544333
No 265
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=96.98 E-value=0.0014 Score=44.98 Aligned_cols=32 Identities=22% Similarity=0.342 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhccc
Q 002375 675 ERLVYEGWILYDTGHREEALSRAEKSISIERT 706 (929)
Q Consensus 675 ~~~~~lg~~~~~~g~~~eA~~~~~~al~l~p~ 706 (929)
.+|+.+|.++..+|++++|+..|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 45566666666666666666666666666664
No 266
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=96.96 E-value=0.0011 Score=72.82 Aligned_cols=97 Identities=22% Similarity=0.155 Sum_probs=79.7
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHh----hcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCH
Q 002375 785 GLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS----EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKE 860 (929)
Q Consensus 785 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg----~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~ 860 (929)
.-+...+.-+.++.|+..|.++++++|+++..+.+++ ..+++..|+..+.+|++.+|....+|+..|.+.+..+++
T Consensus 9 ~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~ 88 (476)
T KOG0376|consen 9 NEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEF 88 (476)
T ss_pred hHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHH
Confidence 3455666777888888888888888888887777776 567888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHhcCCCchHHH
Q 002375 861 VEAVEELSKAIAFKPDLQMLH 881 (929)
Q Consensus 861 ~eA~~~l~kal~~~p~~~~~~ 881 (929)
.+|...|++...+.|+.+.+.
T Consensus 89 ~~A~~~l~~~~~l~Pnd~~~~ 109 (476)
T KOG0376|consen 89 KKALLDLEKVKKLAPNDPDAT 109 (476)
T ss_pred HHHHHHHHHhhhcCcCcHHHH
Confidence 888888888888888887665
No 267
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.91 E-value=0.00057 Score=71.40 Aligned_cols=87 Identities=24% Similarity=0.235 Sum_probs=70.3
Q ss_pred cCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHH-HHHHHHHHcCCHHHHHHHHH
Q 002375 823 YSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLH-LRAAFYESIGDLTSAIRDSQ 901 (929)
Q Consensus 823 ~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~-~la~~~~~~g~~~~A~~~~~ 901 (929)
.|.++.|++.|..++.++|..+..+..++.++++++++..|+..+..+++++|+...-| .+|.....+|++++|.++++
T Consensus 127 ~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~ 206 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLA 206 (377)
T ss_pred CcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHH
Confidence 46678888888888888888888888888888888888888888888888888876555 77888888888888888888
Q ss_pred HHhccCCC
Q 002375 902 AALCLDPN 909 (929)
Q Consensus 902 ~al~l~P~ 909 (929)
.+.+++-+
T Consensus 207 ~a~kld~d 214 (377)
T KOG1308|consen 207 LACKLDYD 214 (377)
T ss_pred HHHhcccc
Confidence 88887643
No 268
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.90 E-value=0.28 Score=56.72 Aligned_cols=122 Identities=17% Similarity=0.096 Sum_probs=63.8
Q ss_pred HHHHhcCHHHHHHHHHHHHhcCCch-HHH-HHHH----HH-HHH----HcCCHHHHHHHHHHHHhhccchHHHHHHHHHH
Q 002375 649 LLLRLNCQKAAMRCLRLARNHSSSE-HER-LVYE----GW-ILY----DTGHREEALSRAEKSISIERTFEAFFLKAYIL 717 (929)
Q Consensus 649 ~~~~~g~~~~A~~~l~~al~~~p~~-~~~-~~~l----g~-~~~----~~g~~~eA~~~~~~al~l~p~~~a~~~l~~~l 717 (929)
+..-.|+-+.+++.+.++.+...-. +-+ +..+ +. .+. .....+.|.+.++...+..|+.
T Consensus 197 ~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s---------- 266 (468)
T PF10300_consen 197 FVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNS---------- 266 (468)
T ss_pred hcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCc----------
Confidence 3334577778888887776632111 111 1111 11 111 2345667777777777777766
Q ss_pred HhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcCC------ChHHHHHHHHHHH
Q 002375 718 ADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIK------HTRAHQGLARVYY 791 (929)
Q Consensus 718 ~~~~~~~~~~~~a~~~~~~Al~~~~~~l~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~------~~~a~~~la~~~~ 791 (929)
.-.+...|.++...|+.++|++.|++++... +.-.++.++.++.
T Consensus 267 ------------------------------~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~ 316 (468)
T PF10300_consen 267 ------------------------------ALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHM 316 (468)
T ss_pred ------------------------------HHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHH
Confidence 2234445555555566666666666555431 1124455555666
Q ss_pred HhCCHHHHHHHHHHHHHHc
Q 002375 792 LKNELKAAYDEMTKLLEKA 810 (929)
Q Consensus 792 ~~g~~~~A~~~~~~al~~~ 810 (929)
.+.+|++|.+.+.++.+.+
T Consensus 317 ~~~~w~~A~~~f~~L~~~s 335 (468)
T PF10300_consen 317 FQHDWEEAAEYFLRLLKES 335 (468)
T ss_pred HHchHHHHHHHHHHHHhcc
Confidence 6666666666665555543
No 269
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.88 E-value=0.0032 Score=62.63 Aligned_cols=79 Identities=14% Similarity=0.120 Sum_probs=75.8
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 002375 626 LAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIE 704 (929)
Q Consensus 626 l~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~l~ 704 (929)
+.+|.+++.++|..+..|.+.+.+++++++++.+...-+++++++|+....++.+|..+.....|++|+..++++..+.
T Consensus 30 i~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~ 108 (284)
T KOG4642|consen 30 IDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLL 108 (284)
T ss_pred HHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHH
Confidence 7788999999999999999999999999999999999999999999999999999999999999999999999997654
No 270
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.87 E-value=0.0082 Score=62.63 Aligned_cols=107 Identities=16% Similarity=0.053 Sum_probs=85.7
Q ss_pred HHHHHHHHHHhhHHHHhcccHHHHHHHHHHHHhcCccccHHHHHHHHHHhchHHHHHHHHHhhhcCCCcchhhhHHHHHh
Q 002375 415 RWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGHIYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLY 494 (929)
Q Consensus 415 ~~~~a~~~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~~~a~la~~~~~~g~a~~a~~~~~~l~~~~~~~~~~~~~~~l~ 494 (929)
+...|.-|-.-|+-|++.++|..|+..|.+.|+..-.... ..+.+|.++..+...++
T Consensus 77 p~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~d-lnavLY~NRAAa~~~l~---------------------- 133 (390)
T KOG0551|consen 77 PHEQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPD-LNAVLYTNRAAAQLYLG---------------------- 133 (390)
T ss_pred hHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCcc-HHHHHHhhHHHHHHHHH----------------------
Confidence 3457788889999999999999999999999998322221 13346666666555555
Q ss_pred hhhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhccc
Q 002375 495 NLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFK 545 (929)
Q Consensus 495 ~~~~~Ai~~~~~al~l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~ 545 (929)
.++.++.+..+|+.++|++..+++.-|.+++++..+.+|...++..+.+.
T Consensus 134 -NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d 183 (390)
T KOG0551|consen 134 -NYRSALNDCSAALKLKPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQID 183 (390)
T ss_pred -HHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhh
Confidence 67788999999999999999999999999999999999999998887544
No 271
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=96.85 E-value=1.2 Score=50.07 Aligned_cols=394 Identities=13% Similarity=0.007 Sum_probs=222.4
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccCCHhHHHHHHH-HHHHhccHHHH----HHHHHH
Q 002375 499 EKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAW-LFIAADDYESA----LRDTLA 573 (929)
Q Consensus 499 ~Ai~~~~~al~l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~-~~~~~g~~~eA----~~~~~~ 573 (929)
+..+.|++.+...|..+.+|.......+..++|+.-...|.+.+....+.+.|...-. +....++...+ ...|+-
T Consensus 37 ~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f 116 (656)
T KOG1914|consen 37 KVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLWKLYLSYVRETKGKLFGYREKMVQAYDF 116 (656)
T ss_pred HHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHccCcchHHHHHHHHHHH
Confidence 7888999999999999999999999999999999999999999855556555443322 22223333332 233444
Q ss_pred HHhhcCCchhhhccccHHHHHHHHH---HhhcccchHHHHHHhhhcccccccccc-HHHHHHHHhcCCCCh-HHHH----
Q 002375 574 LLALESNYMMFHGRVSGDHLVKLLN---HHVRSWSPADCWIKLYDRWSSVDDIGS-LAVINQMLINDPGKS-FLRF---- 644 (929)
Q Consensus 574 al~~~p~~~~~~~~~~a~~ll~~~~---~~~~~~~~A~~~l~l~~~~~~~d~~~a-l~~~~~al~~~p~~~-~~~~---- 644 (929)
++...--+...+ ..+.-..... ...|.|++-.. +.+ -..|++++..--.+. .+|.
T Consensus 117 ~l~kig~di~s~---siW~eYi~FL~~vea~gk~ee~QR-------------I~~vRriYqral~tPm~nlEkLW~DY~~ 180 (656)
T KOG1914|consen 117 ALEKIGMDIKSY---SIWDEYINFLEGVEAVGKYEENQR-------------ITAVRRIYQRALVTPMHNLEKLWKDYEA 180 (656)
T ss_pred HHHHhccCcccc---hhHHHHHHHHHcccccccHHHHHH-------------HHHHHHHHHHHhcCccccHHHHHHHHHH
Confidence 443222111000 1111111111 22333332210 001 233444544321111 1121
Q ss_pred ---------HHHHHHHHhcCHHHHHHHHHHHHhc-------CCc-----------hHHHHHHHHHHHHHc------CCH-
Q 002375 645 ---------RQSLLLLRLNCQKAAMRCLRLARNH-------SSS-----------EHERLVYEGWILYDT------GHR- 690 (929)
Q Consensus 645 ---------~lg~~~~~~g~~~~A~~~l~~al~~-------~p~-----------~~~~~~~lg~~~~~~------g~~- 690 (929)
..-.+-.+...|..|.+.+++...+ +|. ..+.|.++...-... |..
T Consensus 181 fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~ 260 (656)
T KOG1914|consen 181 FEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRTLDGTML 260 (656)
T ss_pred HHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcccccccHH
Confidence 1112223344566666666665432 111 012233322221111 111
Q ss_pred -HHHHHHHHHHHhhccch-HHHHHHHHHHHhcC---CCCCChHHHHHHHHHHhhchhccCchh-----HHHHHHHHHHHH
Q 002375 691 -EEALSRAEKSISIERTF-EAFFLKAYILADTN---LDPESSTYVIQLLEEALRCPSDGLRKG-----QALNNLGSIYVE 760 (929)
Q Consensus 691 -~eA~~~~~~al~l~p~~-~a~~~l~~~l~~~~---~~~~~~~~a~~~~~~Al~~~~~~l~~~-----~a~~~lg~~~~~ 760 (929)
..-.-.|++++..-+-. +.|+.....+...+ ...+....+...-+++..+|++++... ..++.++..-..
T Consensus 261 ~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~ 340 (656)
T KOG1914|consen 261 TRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEES 340 (656)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 11223456666554444 55555444443322 122233333334566666666665421 223333322222
Q ss_pred c---CCHHHHHHHHHHHHcC---CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHh-----hcCCHHHH
Q 002375 761 C---GKLDQAENCYINALDI---KHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS-----EYSDREMA 829 (929)
Q Consensus 761 ~---g~~~eA~~~~~~al~~---~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg-----~~~~~~~A 829 (929)
. .+++.-...+++++.+ +++-++..+-+.-.+..-...|...|.++-+..-....++..-+ -.++..-|
T Consensus 341 ~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~A 420 (656)
T KOG1914|consen 341 RYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETA 420 (656)
T ss_pred hcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHH
Confidence 2 2356667788888877 45567777777777777788899999998775544434444444 46899999
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCc-hHHHHH-HHHHHHcCCHHHHHHHHHHHhc
Q 002375 830 KNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAF--KPDL-QMLHLR-AAFYESIGDLTSAIRDSQAALC 905 (929)
Q Consensus 830 ~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~--~p~~-~~~~~l-a~~~~~~g~~~~A~~~~~~al~ 905 (929)
...|+-.++..++.+..-......+...++-..|...|++++.. .|+- ...+.+ -..-..-||...+++.=++-..
T Consensus 421 frIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 421 FRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 99999999999999998888888999999999999999999987 3332 233333 4444557888888887776666
Q ss_pred cCC
Q 002375 906 LDP 908 (929)
Q Consensus 906 l~P 908 (929)
..|
T Consensus 501 af~ 503 (656)
T KOG1914|consen 501 AFP 503 (656)
T ss_pred hcc
Confidence 555
No 272
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=96.84 E-value=0.0022 Score=44.00 Aligned_cols=32 Identities=31% Similarity=0.493 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhccc
Q 002375 675 ERLVYEGWILYDTGHREEALSRAEKSISIERT 706 (929)
Q Consensus 675 ~~~~~lg~~~~~~g~~~eA~~~~~~al~l~p~ 706 (929)
.+++.+|.+++..|++++|+..|+++++++|+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 45666666666666666666666666666664
No 273
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=96.83 E-value=1.1 Score=53.51 Aligned_cols=294 Identities=17% Similarity=0.085 Sum_probs=167.9
Q ss_pred CCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccCCHhHHHHHHHHHHHhccHHHHHHHHHHHHhhcCCchhhhccccHH
Q 002375 512 PTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGD 591 (929)
Q Consensus 512 P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~a~ 591 (929)
|.....+..-+..+...|...+|+...-++-+-..-.+.....++-.+..++..- +...++.-|..... ..-...
T Consensus 344 ~~~~~lH~~Aa~w~~~~g~~~eAI~hAlaA~d~~~aa~lle~~~~~L~~~~~lsl----l~~~~~~lP~~~l~-~~P~Lv 418 (894)
T COG2909 344 ARLKELHRAAAEWFAEHGLPSEAIDHALAAGDPEMAADLLEQLEWQLFNGSELSL----LLAWLKALPAELLA-STPRLV 418 (894)
T ss_pred CchhHHHHHHHHHHHhCCChHHHHHHHHhCCCHHHHHHHHHhhhhhhhcccchHH----HHHHHHhCCHHHHh-hCchHH
Confidence 3445667777777888888888887766653111123334444554555554433 23333333433211 111223
Q ss_pred HHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcC--CC-------ChHHHHHHHHHHHHhcCHHHHHHH
Q 002375 592 HLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLIND--PG-------KSFLRFRQSLLLLRLNCQKAAMRC 662 (929)
Q Consensus 592 ~ll~~~~~~~~~~~~A~~~l~l~~~~~~~d~~~al~~~~~al~~~--p~-------~~~~~~~lg~~~~~~g~~~~A~~~ 662 (929)
.+.+.......++++|...+ .++...- |+ .+...-..|.+....|++++|++.
T Consensus 419 ll~aW~~~s~~r~~ea~~li------------------~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~l 480 (894)
T COG2909 419 LLQAWLLASQHRLAEAETLI------------------ARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDL 480 (894)
T ss_pred HHHHHHHHHccChHHHHHHH------------------HHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 33444555666777776665 2222111 11 123445678888899999999999
Q ss_pred HHHHHhcCCch-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHH-------HHHHHHhcCCCCCChHHH
Q 002375 663 LRLARNHSSSE-----HERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFL-------KAYILADTNLDPESSTYV 730 (929)
Q Consensus 663 l~~al~~~p~~-----~~~~~~lg~~~~~~g~~~eA~~~~~~al~l~p~~~a~~~-------l~~~l~~~~~~~~~~~~a 730 (929)
.+.++..-|.+ ......+|.+..-.|++++|..+..++.+....++.++. .+..+...| +.
T Consensus 481 ar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qG------q~- 553 (894)
T COG2909 481 ARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQG------QV- 553 (894)
T ss_pred HHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhh------HH-
Confidence 99999887765 445677899999999999999999999988655522221 222333333 11
Q ss_pred HHHHHHHhhchhcc----C----chhHHHHHHHHHHHHcCCHHHHHHHHHHHHcCC-----Ch----HHHHHHHHHHHHh
Q 002375 731 IQLLEEALRCPSDG----L----RKGQALNNLGSIYVECGKLDQAENCYINALDIK-----HT----RAHQGLARVYYLK 793 (929)
Q Consensus 731 ~~~~~~Al~~~~~~----l----~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~-----~~----~a~~~la~~~~~~ 793 (929)
.+.+....+... + ..+......+.++...-+++.+.......++.. ++ -+...++.+++..
T Consensus 554 --~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~ 631 (894)
T COG2909 554 --ARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLR 631 (894)
T ss_pred --HHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhc
Confidence 111111111111 0 011222223333333333677766666666651 11 2345899999999
Q ss_pred CCHHHHHHHHHHHHHHccCC-HHH-HHHHh---------hcCCHHHHHHHHHHHH
Q 002375 794 NELKAAYDEMTKLLEKAQYS-ASA-FEKRS---------EYSDREMAKNDLNMAT 837 (929)
Q Consensus 794 g~~~~A~~~~~~al~~~p~~-~~~-~~~lg---------~~~~~~~A~~~~~~al 837 (929)
|+.++|...+........+. ... |...+ ..|+..+|.....+..
T Consensus 632 Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~s~ 686 (894)
T COG2909 632 GDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLKSG 686 (894)
T ss_pred CCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHhcc
Confidence 99999999998887665443 111 11111 4588888888777743
No 274
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.80 E-value=0.28 Score=57.99 Aligned_cols=173 Identities=15% Similarity=0.051 Sum_probs=116.5
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHh-----CCHHHHHHHHHHHhcc------cCCHhHHHHHHHHHHHh----c-
Q 002375 499 EKIVDLNYASELDPTLSFPYKYRAVAKMEE-----GQIRAAISEIDRIIVF------KLSVDCLELRAWLFIAA----D- 562 (929)
Q Consensus 499 ~Ai~~~~~al~l~P~~~~a~~~~a~~~~~~-----g~~~~A~~~~~~al~~------~~~~~~~~~~a~~~~~~----g- 562 (929)
.+...++.+.+. .+..+.+.+|.++..- +|.+.|+.+|+.+... ...+.....+|.+|..- .
T Consensus 230 ~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~ 307 (552)
T KOG1550|consen 230 EAFKYYREAAKL--GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKI 307 (552)
T ss_pred HHHHHHHHHHhh--cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccc
Confidence 566666666544 4566777777777654 6899999999988751 11455677788888773 3
Q ss_pred cHHHHHHHHHHHHhhcCCchhhhccccHHHHHHHHHHhhc---ccchHHHHHHhhhccccccccccHHHHHHHHhcCCCC
Q 002375 563 DYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVR---SWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGK 639 (929)
Q Consensus 563 ~~~eA~~~~~~al~~~p~~~~~~~~~~a~~ll~~~~~~~~---~~~~A~~~l~l~~~~~~~d~~~al~~~~~al~~~p~~ 639 (929)
++..|+..|.++-.... + .+.+.+|.++..-. +..+|..++ ..+.. -.+
T Consensus 308 d~~~A~~~~~~aA~~g~--~------~a~~~lg~~~~~g~~~~d~~~A~~yy------------------~~Aa~--~G~ 359 (552)
T KOG1550|consen 308 DYEKALKLYTKAAELGN--P------DAQYLLGVLYETGTKERDYRRAFEYY------------------SLAAK--AGH 359 (552)
T ss_pred cHHHHHHHHHHHHhcCC--c------hHHHHHHHHHHcCCccccHHHHHHHH------------------HHHHH--cCC
Confidence 78889999998887643 3 55666777775543 344565554 55443 356
Q ss_pred hHHHHHHHHHHHH----hcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhh
Q 002375 640 SFLRFRQSLLLLR----LNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDT-GHREEALSRAEKSISI 703 (929)
Q Consensus 640 ~~~~~~lg~~~~~----~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~-g~~~eA~~~~~~al~l 703 (929)
..+.+.++.+|.. ..+...|..++.++.+.. .+.+...++..+..- ++++.+...+....+.
T Consensus 360 ~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~ 426 (552)
T KOG1550|consen 360 ILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLYLAEL 426 (552)
T ss_pred hHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHHHHHh
Confidence 7788888888865 347789999999999887 345555555554333 7777777666555443
No 275
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=96.77 E-value=0.005 Score=46.88 Aligned_cols=48 Identities=21% Similarity=0.209 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHhhhhh
Q 002375 879 MLHLRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNRARDQASH 926 (929)
Q Consensus 879 ~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~l~~~~~~ 926 (929)
.+|.+|..+.++|++++|..+.+.+|+++|+|..+..+...|..+..+
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~~i~k 50 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIEDKIQK 50 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhc
Confidence 467889999999999999999999999999999999999999877654
No 276
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.75 E-value=1.3 Score=50.61 Aligned_cols=104 Identities=16% Similarity=-0.001 Sum_probs=84.3
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCchHHHHH-HHHHHHcCCHHHHHHH
Q 002375 822 EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFK-PDLQMLHLR-AAFYESIGDLTSAIRD 899 (929)
Q Consensus 822 ~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~-p~~~~~~~l-a~~~~~~g~~~~A~~~ 899 (929)
..|+++...-.|++++---....+.|...+......|+.+-|-..+..+.++. |+.+..+++ +.+-...|++..|...
T Consensus 309 ~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~ 388 (577)
T KOG1258|consen 309 TLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVI 388 (577)
T ss_pred hcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHH
Confidence 46888888888888887666788899999998888899999998888887764 556677755 8888889999999999
Q ss_pred HHHHhccCCCCHHHHHHHHHHHhhhh
Q 002375 900 SQAALCLDPNHMETLDLYNRARDQAS 925 (929)
Q Consensus 900 ~~~al~l~P~~~~a~~~~~~l~~~~~ 925 (929)
+++..+-.|+..++-....-+....+
T Consensus 389 lq~i~~e~pg~v~~~l~~~~~e~r~~ 414 (577)
T KOG1258|consen 389 LQRIESEYPGLVEVVLRKINWERRKG 414 (577)
T ss_pred HHHHHhhCCchhhhHHHHHhHHHHhc
Confidence 99999888998887666655554443
No 277
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.75 E-value=0.82 Score=46.71 Aligned_cols=220 Identities=15% Similarity=0.071 Sum_probs=136.4
Q ss_pred ccHHHHHHHHHHHHhcCccccHHHHHHHHHHhchHHHHHHHHHhhhcCCCcchhhhHHHHHhhhhh---HHHHHHHHHHh
Q 002375 433 EEYKDACYYFEAAADAGHIYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNLGR---EKIVDLNYASE 509 (929)
Q Consensus 433 g~y~~A~~~f~~al~~~~~~~~a~la~~~~~~g~a~~a~~~~~~l~~~~~~~~~~~~~~~l~~~~~---~Ai~~~~~al~ 509 (929)
.+|.++..+|+..+..+..... +....+.++.+.|. +...|.++..++-..+. +-+..+++.++
T Consensus 40 e~fr~~m~YfRAI~~~~E~S~R------------Al~LT~d~i~lNpA-nYTVW~yRr~iL~~l~~dL~~El~~l~eI~e 106 (318)
T KOG0530|consen 40 EDFRDVMDYFRAIIAKNEKSPR------------ALQLTEDAIRLNPA-NYTVWQYRRVILRHLMSDLNKELEYLDEIIE 106 (318)
T ss_pred hhHHHHHHHHHHHHhccccCHH------------HHHHHHHHHHhCcc-cchHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3566666666666655444332 11222222333333 44566666655544443 77889999999
Q ss_pred cCCCChHHHHHHHHHHHHhCCHH-HHHHHHHHHhcccC-CHhHHHHHHHHHHHhccHHHHHHHHHHHHhhcCCch-hhhc
Q 002375 510 LDPTLSFPYKYRAVAKMEEGQIR-AAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLALLALESNYM-MFHG 586 (929)
Q Consensus 510 l~P~~~~a~~~~a~~~~~~g~~~-~A~~~~~~al~~~~-~~~~~~~~a~~~~~~g~~~eA~~~~~~al~~~p~~~-~~~~ 586 (929)
-+|++...|..+-.+....|+.. .-+.....++..+. +-.++..+-|+....+.++.-+.+..+.++.+-.+. .|..
T Consensus 107 ~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~ 186 (318)
T KOG0530|consen 107 DNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQ 186 (318)
T ss_pred hCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhhe
Confidence 99999999999999999999888 77888888886554 666788899999999999999999999998875544 2322
Q ss_pred cccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHHHH-hc--CHHHHHHHH
Q 002375 587 RVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLR-LN--CQKAAMRCL 663 (929)
Q Consensus 587 ~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~d~~~al~~~~~al~~~p~~~~~~~~lg~~~~~-~g--~~~~A~~~l 663 (929)
+.-... ...|-.+++.- ..-+....+.+...|++..+|..+.-++.. .| .+.+-....
T Consensus 187 Ryfvi~------~~~~~~~~~~l-------------e~El~yt~~~I~~vP~NeSaWnYL~G~l~~d~gl~s~s~vv~f~ 247 (318)
T KOG0530|consen 187 RYFVIT------NTKGVISKAEL-------------ERELNYTKDKILLVPNNESAWNYLKGLLELDSGLSSDSKVVSFV 247 (318)
T ss_pred eeEEEE------eccCCccHHHH-------------HHHHHHHHHHHHhCCCCccHHHHHHHHHHhccCCcCCchHHHHH
Confidence 100000 00111111100 001344478888999999999988888775 44 123333333
Q ss_pred HHHH-hcCCchHHHHHHHHHHH
Q 002375 664 RLAR-NHSSSEHERLVYEGWIL 684 (929)
Q Consensus 664 ~~al-~~~p~~~~~~~~lg~~~ 684 (929)
.... ......|..+-.+..+|
T Consensus 248 ~~l~~~~~~~sP~lla~l~d~~ 269 (318)
T KOG0530|consen 248 ENLYLQLPKRSPFLLAFLLDLY 269 (318)
T ss_pred HHHhhccCCCChhHHHHHHHHH
Confidence 3333 33334455555555555
No 278
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=96.55 E-value=0.031 Score=50.74 Aligned_cols=84 Identities=18% Similarity=0.184 Sum_probs=71.5
Q ss_pred CcHHHHHHHHHHHhcC---CHHHHHHHHHHHHh-cCCCc--hHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHH
Q 002375 843 RTYPYRYRAAVLMDDQ---KEVEAVEELSKAIA-FKPDL--QMLHLRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDL 916 (929)
Q Consensus 843 ~~~~~~~la~~~~~~g---~~~eA~~~l~kal~-~~p~~--~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~ 916 (929)
.....+++|+++.... +..+.+..++..++ -.|.. ...|++|..+.+.|+|+.|+.+.+..++.+|+|.++..+
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L 110 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL 110 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 4567788999998765 56778999999997 44544 467789999999999999999999999999999999999
Q ss_pred HHHHHhhhhh
Q 002375 917 YNRARDQASH 926 (929)
Q Consensus 917 ~~~l~~~~~~ 926 (929)
.+.|.....+
T Consensus 111 k~~ied~itk 120 (149)
T KOG3364|consen 111 KETIEDKITK 120 (149)
T ss_pred HHHHHHHHhh
Confidence 9999887654
No 279
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=96.52 E-value=2.7 Score=55.41 Aligned_cols=104 Identities=16% Similarity=0.088 Sum_probs=82.6
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCC--------HH----
Q 002375 748 GQALNNLGSIYVECGKLDQAENCYINALDIKHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYS--------AS---- 815 (929)
Q Consensus 748 ~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--------~~---- 815 (929)
++.|.+.|.+....|+++.|..+.-+|.+.+.+.+....|..+...|+-..|+..+++.++.+-.+ +.
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~ 1749 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESRLPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNL 1749 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhcccchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhh
Confidence 688999999999999999999999999999999999999999999999999999999999664222 10
Q ss_pred -----HHHHHh----hcCCH--HHHHHHHHHHHhcCCCCcHHHHHHH
Q 002375 816 -----AFEKRS----EYSDR--EMAKNDLNMATQLDPLRTYPYRYRA 851 (929)
Q Consensus 816 -----~~~~lg----~~~~~--~~A~~~~~~al~l~p~~~~~~~~la 851 (929)
+....+ +.+++ .+-+..|..+.+..|.....++.+|
T Consensus 1750 ~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~ 1796 (2382)
T KOG0890|consen 1750 LIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLG 1796 (2382)
T ss_pred hhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHH
Confidence 111111 22333 5667788888888887777777777
No 280
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.51 E-value=0.1 Score=54.28 Aligned_cols=159 Identities=14% Similarity=0.028 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHhcccC-CHhHHHHHHHHHHHhccHHHHHHHHHHHHhhcCCchhhhccccHHHHHH
Q 002375 517 PYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVK 595 (929)
Q Consensus 517 a~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~a~~ll~ 595 (929)
.-+..+.-....|++.+|...|..++...+ +.+....++.++...|+.+.|...+...-....+.. + ..+.+
T Consensus 136 ~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~-~------~~l~a 208 (304)
T COG3118 136 EALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKA-A------HGLQA 208 (304)
T ss_pred HHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhH-H------HHHHH
Confidence 344456667777888888888888877776 666777778888888888877766654322211111 0 00001
Q ss_pred HHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc--h
Q 002375 596 LLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSS--E 673 (929)
Q Consensus 596 ~~~~~~~~~~~A~~~l~l~~~~~~~d~~~al~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~--~ 673 (929)
.+. ....| .....+..+++.+..+|++..+.+.++..+...|+++.|.+.+-..++.+.. +
T Consensus 209 ~i~----ll~qa-------------a~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d 271 (304)
T COG3118 209 QIE----LLEQA-------------AATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFED 271 (304)
T ss_pred HHH----HHHHH-------------hcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccC
Confidence 000 00000 1112234447888889999999999999999999999999998888876543 3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002375 674 HERLVYEGWILYDTGHREEALSRAEK 699 (929)
Q Consensus 674 ~~~~~~lg~~~~~~g~~~eA~~~~~~ 699 (929)
..+...+-.++...|.-+.+...|++
T Consensus 272 ~~~Rk~lle~f~~~g~~Dp~~~~~RR 297 (304)
T COG3118 272 GEARKTLLELFEAFGPADPLVLAYRR 297 (304)
T ss_pred cHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 45555555566555544444444443
No 281
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=96.50 E-value=2.7 Score=50.38 Aligned_cols=211 Identities=14% Similarity=0.003 Sum_probs=131.6
Q ss_pred CcchhhhHHHHHhhhhh--HHHHHHHHHHhcCCC---------ChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccC----
Q 002375 482 KPTGWMYQERSLYNLGR--EKIVDLNYASELDPT---------LSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL---- 546 (929)
Q Consensus 482 ~~~~~~~~~~~l~~~~~--~Ai~~~~~al~l~P~---------~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~---- 546 (929)
.|.--+.++...+...+ +|.....++-..-|. .+...-.+|.+....|+.+.|.+..+.++..-+
T Consensus 414 ~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~ 493 (894)
T COG2909 414 TPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAY 493 (894)
T ss_pred CchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccc
Confidence 34444444555554544 665565555444332 234556678888999999999999999986554
Q ss_pred --CHhHHHHHHHHHHHhccHHHHHHHHHHHHhhcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccc
Q 002375 547 --SVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIG 624 (929)
Q Consensus 547 --~~~~~~~~a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~d~~~ 624 (929)
...++...|.+..-.|++++|..+.+.+.+....+..++..+-+....+.+....|+...+.....
T Consensus 494 ~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~------------ 561 (894)
T COG2909 494 RSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKA------------ 561 (894)
T ss_pred hhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHH------------
Confidence 223466778888889999999999999888765554333322344445566666663333211110
Q ss_pred cHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC----Cch--HH-HHHHHHHHHHHcCCHHHHHHHH
Q 002375 625 SLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHS----SSE--HE-RLVYEGWILYDTGHREEALSRA 697 (929)
Q Consensus 625 al~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~----p~~--~~-~~~~lg~~~~~~g~~~eA~~~~ 697 (929)
.-..+.+-+...|-.......++.++...-+++.+.......++.. |.. .. ....++.+++..|++++|...+
T Consensus 562 ~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l 641 (894)
T COG2909 562 FNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQL 641 (894)
T ss_pred HHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 0112234444556655566666666665555777777776665542 222 22 2247899999999999999998
Q ss_pred HHHHhhc
Q 002375 698 EKSISIE 704 (929)
Q Consensus 698 ~~al~l~ 704 (929)
.+...+.
T Consensus 642 ~~~~~l~ 648 (894)
T COG2909 642 DELERLL 648 (894)
T ss_pred HHHHHHh
Confidence 8877653
No 282
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.46 E-value=1.5 Score=47.08 Aligned_cols=162 Identities=10% Similarity=-0.059 Sum_probs=96.6
Q ss_pred HHhCCHHHHHHHHHHHhccc-C-CHhH-------HHHHHHHHHHhc-cHHHHHHHHHHHHhhc----CCch---hh-hcc
Q 002375 526 MEEGQIRAAISEIDRIIVFK-L-SVDC-------LELRAWLFIAAD-DYESALRDTLALLALE----SNYM---MF-HGR 587 (929)
Q Consensus 526 ~~~g~~~~A~~~~~~al~~~-~-~~~~-------~~~~a~~~~~~g-~~~eA~~~~~~al~~~----p~~~---~~-~~~ 587 (929)
.++||++.|...+.|+-... . +|+. +++.|...+..+ ++++|...++++.++- +... .. .-+
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 46788888888888876544 2 4443 556666667778 9999999999988873 2111 11 122
Q ss_pred ccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 002375 588 VSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLAR 667 (929)
Q Consensus 588 ~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~d~~~al~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al 667 (929)
...+..++.++...+.++..... ......+-...|+.+..+...-.+....++.+++.+.+.+++
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka---------------~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi 148 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKA---------------LNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMI 148 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHH---------------HHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHH
Confidence 34555666666555444322111 222244445568878887666666666889999999999998
Q ss_pred hcCCch-H--HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 002375 668 NHSSSE-H--ERLVYEGWILYDTGHREEALSRAEKSISI 703 (929)
Q Consensus 668 ~~~p~~-~--~~~~~lg~~~~~~g~~~eA~~~~~~al~l 703 (929)
..-+-. . +.......-+.. .....|...+...+..
T Consensus 149 ~~~~~~e~~~~~~l~~i~~l~~-~~~~~a~~~ld~~l~~ 186 (278)
T PF08631_consen 149 RSVDHSESNFDSILHHIKQLAE-KSPELAAFCLDYLLLN 186 (278)
T ss_pred HhcccccchHHHHHHHHHHHHh-hCcHHHHHHHHHHHHH
Confidence 765421 1 111111222222 3345677777776654
No 283
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.45 E-value=3.3 Score=49.96 Aligned_cols=232 Identities=13% Similarity=0.065 Sum_probs=145.5
Q ss_pred CChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccCCHhHHHHHHHHHHHhccHHHHHHHHHHHHhhcCCchhhhccccHHH
Q 002375 513 TLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDH 592 (929)
Q Consensus 513 ~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~a~~ 592 (929)
+.+..|..+|.+..+.|...+|++.|-++- +|..|........+.|.|++-++++..+-+...... ...
T Consensus 1102 n~p~vWsqlakAQL~~~~v~dAieSyikad----Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~-------id~ 1170 (1666)
T KOG0985|consen 1102 NEPAVWSQLAKAQLQGGLVKDAIESYIKAD----DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPY-------IDS 1170 (1666)
T ss_pred CChHHHHHHHHHHHhcCchHHHHHHHHhcC----CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCcc-------chH
Confidence 456677777777777777777777777663 466666667777777777777777776655432211 111
Q ss_pred HHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc
Q 002375 593 LVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSS 672 (929)
Q Consensus 593 ll~~~~~~~~~~~~A~~~l~l~~~~~~~d~~~al~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~ 672 (929)
-+-..|...++..+-+.++ ..|+.+. .-..|.-.+..+.|+.|.-.|..
T Consensus 1171 eLi~AyAkt~rl~elE~fi-----------------------~gpN~A~-i~~vGdrcf~~~~y~aAkl~y~~------- 1219 (1666)
T KOG0985|consen 1171 ELIFAYAKTNRLTELEEFI-----------------------AGPNVAN-IQQVGDRCFEEKMYEAAKLLYSN------- 1219 (1666)
T ss_pred HHHHHHHHhchHHHHHHHh-----------------------cCCCchh-HHHHhHHHhhhhhhHHHHHHHHH-------
Confidence 1233334444433332222 2455443 34567777888889888887765
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHH
Q 002375 673 EHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALN 752 (929)
Q Consensus 673 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~l~p~~~a~~~l~~~l~~~~~~~~~~~~a~~~~~~Al~~~~~~l~~~~a~~ 752 (929)
..-|..++..+..+|+|+.|....++|-.. ..|.....+..+.+ .+.-|.-|=-..+-.++-+-
T Consensus 1220 -vSN~a~La~TLV~LgeyQ~AVD~aRKAns~----ktWK~VcfaCvd~~-----------EFrlAQiCGL~iivhadeLe 1283 (1666)
T KOG0985|consen 1220 -VSNFAKLASTLVYLGEYQGAVDAARKANST----KTWKEVCFACVDKE-----------EFRLAQICGLNIIVHADELE 1283 (1666)
T ss_pred -hhhHHHHHHHHHHHHHHHHHHHHhhhccch----hHHHHHHHHHhchh-----------hhhHHHhcCceEEEehHhHH
Confidence 445777889999999999999988877432 44555555444433 23322222112222345566
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHcC--CChHHHHHHHHHHHHhCCHHHHHHHH
Q 002375 753 NLGSIYVECGKLDQAENCYINALDI--KHTRAHQGLARVYYLKNELKAAYDEM 803 (929)
Q Consensus 753 ~lg~~~~~~g~~~eA~~~~~~al~~--~~~~a~~~la~~~~~~g~~~~A~~~~ 803 (929)
.+...|...|-+++-+..++.++-+ .|-..+..+|.+|.+- ++++-.+.+
T Consensus 1284 eli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky-kp~km~EHl 1335 (1666)
T KOG0985|consen 1284 ELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKY-KPEKMMEHL 1335 (1666)
T ss_pred HHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc-CHHHHHHHH
Confidence 7788899999999999999999887 3555667777777654 344444443
No 284
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.44 E-value=0.13 Score=56.41 Aligned_cols=189 Identities=15% Similarity=0.105 Sum_probs=121.2
Q ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHhc----CCchHHHHHHHHHHHHH---cCCHHHHHHHHHHHHhhcc-ch-HHH
Q 002375 640 SFLRFRQSLLLLRLNCQKAAMRCLRLARNH----SSSEHERLVYEGWILYD---TGHREEALSRAEKSISIER-TF-EAF 710 (929)
Q Consensus 640 ~~~~~~lg~~~~~~g~~~~A~~~l~~al~~----~p~~~~~~~~lg~~~~~---~g~~~eA~~~~~~al~l~p-~~-~a~ 710 (929)
++...++-..|....+|+.-++..+..-.+ -++.+.+.+.+|.++.+ .|+.++|+..+..++.... .+ +.+
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~ 220 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL 220 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence 455667777899999999999888887766 45567888899999999 9999999999999665443 33 667
Q ss_pred HHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcCC-ChHHHHHHHHH
Q 002375 711 FLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIK-HTRAHQGLARV 789 (929)
Q Consensus 711 ~~l~~~l~~~~~~~~~~~~a~~~~~~Al~~~~~~l~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~-~~~a~~~la~~ 789 (929)
...|.++.+.-... -+......++|+.+|.++.+++ +...-.|++.+
T Consensus 221 gL~GRIyKD~~~~s--------------------------------~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtL 268 (374)
T PF13281_consen 221 GLLGRIYKDLFLES--------------------------------NFTDRESLDKAIEWYRKGFEIEPDYYSGINAATL 268 (374)
T ss_pred HHHHHHHHHHHHHc--------------------------------CccchHHHHHHHHHHHHHHcCCccccchHHHHHH
Confidence 77777665442100 0011222788999999999885 33455677777
Q ss_pred HHHhCCHHHHHHHHHHHHHHccCCHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHH
Q 002375 790 YYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSK 869 (929)
Q Consensus 790 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~k 869 (929)
+...|...+......+.... .-..+|..|..+ .-.+...+-.++.+..-.|++++|++.+++
T Consensus 269 L~~~g~~~~~~~el~~i~~~------l~~llg~kg~~~------------~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~ 330 (374)
T PF13281_consen 269 LMLAGHDFETSEELRKIGVK------LSSLLGRKGSLE------------KMQDYWDVATLLEASVLAGDYEKAIQAAEK 330 (374)
T ss_pred HHHcCCcccchHHHHHHHHH------HHHHHHhhcccc------------ccccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 77777755444433333211 000111111100 112233334566677778888888888888
Q ss_pred HHhcCCCch
Q 002375 870 AIAFKPDLQ 878 (929)
Q Consensus 870 al~~~p~~~ 878 (929)
++++.|...
T Consensus 331 ~~~l~~~~W 339 (374)
T PF13281_consen 331 AFKLKPPAW 339 (374)
T ss_pred HhhcCCcch
Confidence 888876654
No 285
>smart00512 Skp1 Found in Skp1 protein family. Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.
Probab=96.41 E-value=0.013 Score=52.30 Aligned_cols=81 Identities=20% Similarity=0.150 Sum_probs=59.0
Q ss_pred EEEEE-cCeEEEehhHHHhccCHHHHHHhcCCCCcC-CCCeeEecCCCCCHHHHHHHhhhhccCCCCC------------
Q 002375 220 VTFCV-RDKEISFVRNKIASLSSPFKAMLYGGFVES-KRKTIDFSHDGVSVEGLRAVEVYTRTSRVDL------------ 285 (929)
Q Consensus 220 v~~~v-~~~~~~~hr~iLaa~S~~F~~m~~~~~~e~-~~~~i~~~~~~~~~~~~~~~l~~~yt~~~~~------------ 285 (929)
|+++- +|.+|.+.+.+. ..|..++.|+.+.-.+. ....|.| ++|+..+|+.+++|++.-.-..
T Consensus 4 v~L~S~Dg~~f~v~~~~a-~~S~~i~~~l~~~~~~~~~~~~Ipl--~~v~~~~L~~Vi~yc~~h~~~~~~~~~~~~~~~w 80 (104)
T smart00512 4 IKLISSDGEVFEVEREVA-RQSKTIKAMIEDLGVDDENNNPIPL--PNVTSKILSKVIEYCEHHVDDPPSVADKDDIPTW 80 (104)
T ss_pred EEEEeCCCCEEEecHHHH-HHHHHHHHHHHccCcccCCCCCccC--CCcCHHHHHHHHHHHHHcccCCCCccccccccHH
Confidence 55554 788999999976 68999999997543322 2257888 9999999999999996432210
Q ss_pred ------CCHhHHHHHHHHhchhCh
Q 002375 286 ------FCPGIVLELLSFANRFCC 303 (929)
Q Consensus 286 ------~~~~~~~~ll~~A~~~~~ 303 (929)
++.+++.+|+.||+.+++
T Consensus 81 D~~F~~~d~~~l~dLl~AAnyL~I 104 (104)
T smart00512 81 DAEFLKIDQETLFELILAANYLDI 104 (104)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCC
Confidence 445567777777777654
No 286
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.36 E-value=0.23 Score=51.73 Aligned_cols=125 Identities=18% Similarity=0.073 Sum_probs=91.5
Q ss_pred HHHhhHHHHhcccHHHHHHHHHHHHhcCccccHH--HHHHHHHHhchHHHHHHHHHhhhcCCCcchhhh-HHHH-Hhhhh
Q 002375 422 LHQLGCVMFEREEYKDACYYFEAAADAGHIYSLA--GLARAKYKVGQQYSAYKLINSIISEHKPTGWMY-QERS-LYNLG 497 (929)
Q Consensus 422 ~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~~~a--~la~~~~~~g~a~~a~~~~~~l~~~~~~~~~~~-~~~~-l~~~~ 497 (929)
-+..|......|++.+|...|..+++..|.+..+ ++++++...|+...+-..+..+-.+.....|.. .++. ++..-
T Consensus 137 ~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qa 216 (304)
T COG3118 137 ALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQA 216 (304)
T ss_pred HHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHH
Confidence 3456778899999999999999999999998766 899999999987665554333322322333333 1111 11111
Q ss_pred h--HHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccC
Q 002375 498 R--EKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL 546 (929)
Q Consensus 498 ~--~Ai~~~~~al~l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~ 546 (929)
. .-+..+++.+..||++..+-+.+|..+...|+.+.|.+.+-..+..+.
T Consensus 217 a~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~ 267 (304)
T COG3118 217 AATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDR 267 (304)
T ss_pred hcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 1 335677888899999999999999999999999999998888875553
No 287
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=96.32 E-value=0.0084 Score=63.06 Aligned_cols=114 Identities=16% Similarity=0.133 Sum_probs=86.4
Q ss_pred eEEEehhHHHhccCHHHHHHhcCCCCcC-CCCeeEecCCCCCHHHHHHHhhhhccCCCCCCCHhHHHHHHHHhchhChHh
Q 002375 227 KEISFVRNKIASLSSPFKAMLYGGFVES-KRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFCPGIVLELLSFANRFCCEE 305 (929)
Q Consensus 227 ~~~~~hr~iLaa~S~~F~~m~~~~~~e~-~~~~i~~~~~~~~~~~~~~~l~~~yt~~~~~~~~~~~~~ll~~A~~~~~~~ 305 (929)
+.|.|.+..|-..-.||+..+.....++ ..+.|+|| -.-+..+|.=+++|+...... ++++||..+|.-|++++|++
T Consensus 14 rdF~C~~~lL~~~M~YF~~~l~~~~~~~~~~~~idis-VhCDv~iF~WLm~yv~~~~p~-l~~~NvvsIliSS~FL~M~~ 91 (317)
T PF11822_consen 14 RDFTCPRDLLVSEMRYFAEYLSRYINDSQRWEEIDIS-VHCDVHIFEWLMRYVKGEPPS-LTPSNVVSILISSEFLQMES 91 (317)
T ss_pred eeeeccHHHHHHhhHHHHHHHhhcccccCcCCCcceE-EecChhHHHHHHHHhhcCCCc-CCcCcEEEeEehhhhhccHH
Confidence 5799999999999999999996533332 23456664 256789999999999986665 99999999999999999999
Q ss_pred HHHHHHHHHHhhcCC---------hhhHHHHHHHHHhhChHHHHHH
Q 002375 306 MKSACDAHLASLVGD---------IEDALILIDYGLEERATLLVAS 342 (929)
Q Consensus 306 l~~~C~~~l~~~~~~---------~~n~~~~~~~a~~~~~~~L~~~ 342 (929)
|.+.|-.|+.+.++. -=|--.+..+|..++..+|..+
T Consensus 92 Lve~cl~y~~~~~~~Iv~~~~nl~Cl~~~Ll~RLa~~~t~~el~~~ 137 (317)
T PF11822_consen 92 LVEECLQYCHDHMSEIVASPCNLNCLNDNLLTRLADMFTHEELEAA 137 (317)
T ss_pred HHHHHHHHHHHhHHHHHcCCCCcccCCHHHHHHHHHhcCcccHhHh
Confidence 999999998766541 1122234556666666666554
No 288
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.27 E-value=0.006 Score=41.78 Aligned_cols=33 Identities=27% Similarity=0.322 Sum_probs=29.8
Q ss_pred HHHHHHhhHHHHhcccHHHHHHHHHHHHhcCcc
Q 002375 419 MLALHQLGCVMFEREEYKDACYYFEAAADAGHI 451 (929)
Q Consensus 419 a~~~~~lG~~~~~~g~y~~A~~~f~~al~~~~~ 451 (929)
+.+++.+|.++...|++++|+..|+++++++|+
T Consensus 1 a~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 1 AEAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp -HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 357899999999999999999999999999874
No 289
>PRK10941 hypothetical protein; Provisional
Probab=96.16 E-value=0.033 Score=58.62 Aligned_cols=82 Identities=15% Similarity=0.096 Sum_probs=73.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHH-HHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHhhh
Q 002375 846 PYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLH-LRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNRARDQA 924 (929)
Q Consensus 846 ~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~-~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~l~~~~ 924 (929)
...++-.+|.+.++++.|+.+.+..+.+.|+++.-+ -+|.+|.++|.+..|..+++..++..|+++.+.....++....
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l~ 262 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSIE 262 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHHh
Confidence 345677789999999999999999999999998544 7999999999999999999999999999999999999988776
Q ss_pred hhh
Q 002375 925 SHQ 927 (929)
Q Consensus 925 ~~~ 927 (929)
.+.
T Consensus 263 ~~~ 265 (269)
T PRK10941 263 QKQ 265 (269)
T ss_pred hcC
Confidence 543
No 290
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=96.16 E-value=0.87 Score=49.23 Aligned_cols=160 Identities=18% Similarity=0.020 Sum_probs=121.0
Q ss_pred HHHHHHHHHHHHc----CCHHHHHHHHHHHHcCCChHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHccCCH-HHHHH
Q 002375 749 QALNNLGSIYVEC----GKLDQAENCYINALDIKHTRAHQGLARVYYL----KNELKAAYDEMTKLLEKAQYSA-SAFEK 819 (929)
Q Consensus 749 ~a~~~lg~~~~~~----g~~~eA~~~~~~al~~~~~~a~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~-~~~~~ 819 (929)
.+...++..|... .+..+|..+|..+.+.+++.+.+.+|..|.. ..+..+|...|.++........ .+...
T Consensus 74 ~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~ 153 (292)
T COG0790 74 AALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYR 153 (292)
T ss_pred HHHHHHHHHHHhccCccccHHHHHHHHHHHhhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHH
Confidence 5677777777653 4678899999988888899999999999887 4589999999999988754432 22344
Q ss_pred Hh---hcC--------CHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCchHHHHHH
Q 002375 820 RS---EYS--------DREMAKNDLNMATQLDPLRTYPYRYRAAVLMD----DQKEVEAVEELSKAIAFKPDLQMLHLRA 884 (929)
Q Consensus 820 lg---~~~--------~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~----~g~~~eA~~~l~kal~~~p~~~~~~~la 884 (929)
++ ..| +...|...|.++-... ++.+...+|.+|.. ..++.+|..+|.++.+... ....+.++
T Consensus 154 l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~-~~a~~~~~ 230 (292)
T COG0790 154 LGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD-GAACYNLG 230 (292)
T ss_pred HHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC-HHHHHHHH
Confidence 44 222 3347888898888766 78889999988865 3489999999999999877 55555667
Q ss_pred HHHHHcC---------------CHHHHHHHHHHHhccCCCCHH
Q 002375 885 AFYESIG---------------DLTSAIRDSQAALCLDPNHME 912 (929)
Q Consensus 885 ~~~~~~g---------------~~~~A~~~~~~al~l~P~~~~ 912 (929)
++...| +...|..++.++....+....
T Consensus 231 -~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 272 (292)
T COG0790 231 -LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDNAC 272 (292)
T ss_pred -HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChhHH
Confidence 666555 889999999999887665443
No 291
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.10 E-value=0.0059 Score=64.06 Aligned_cols=89 Identities=20% Similarity=0.191 Sum_probs=75.3
Q ss_pred HHHhCCHHHHHHHHHHHHHHccCCHHHHHHHh----hcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHH
Q 002375 790 YYLKNELKAAYDEMTKLLEKAQYSASAFEKRS----EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVE 865 (929)
Q Consensus 790 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg----~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~ 865 (929)
.+..|.++.|++.+..+++++|..+..|..++ .+++...|+..+..++.++|+.+..|-..|.+...+|+|++|..
T Consensus 124 Aln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~ 203 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAH 203 (377)
T ss_pred HhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHH
Confidence 34567788888888888888888888888887 67888888888999999999888888888888889999999999
Q ss_pred HHHHHHhcCCCch
Q 002375 866 ELSKAIAFKPDLQ 878 (929)
Q Consensus 866 ~l~kal~~~p~~~ 878 (929)
.+..+.+++-+..
T Consensus 204 dl~~a~kld~dE~ 216 (377)
T KOG1308|consen 204 DLALACKLDYDEA 216 (377)
T ss_pred HHHHHHhccccHH
Confidence 9999988876554
No 292
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.10 E-value=1.6 Score=50.26 Aligned_cols=233 Identities=15% Similarity=0.045 Sum_probs=128.8
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHH----------HHHHHHHHHcCCHHHHHHHHHH
Q 002375 630 NQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERL----------VYEGWILYDTGHREEALSRAEK 699 (929)
Q Consensus 630 ~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~----------~~lg~~~~~~g~~~eA~~~~~~ 699 (929)
.+.++.+| ++.+|..++......-.++-|...|-+.-.. +. ...- ...+.+-.--|+++||.+.|-.
T Consensus 683 ~qfiEdnP-HprLWrllAe~Al~Kl~l~tAE~AFVrc~dY-~G-ik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld 759 (1189)
T KOG2041|consen 683 IQFIEDNP-HPRLWRLLAEYALFKLALDTAEHAFVRCGDY-AG-IKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLD 759 (1189)
T ss_pred HHHHhcCC-chHHHHHHHHHHHHHHhhhhHhhhhhhhccc-cc-hhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhc
Confidence 45555555 6788999998887777777777766554221 11 1111 1223344445888999888854
Q ss_pred HHhhccchHHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccC------chhHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002375 700 SISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGL------RKGQALNNLGSIYVECGKLDQAENCYIN 773 (929)
Q Consensus 700 al~l~p~~~a~~~l~~~l~~~~~~~~~~~~a~~~~~~Al~~~~~~l------~~~~a~~~lg~~~~~~g~~~eA~~~~~~ 773 (929)
+=+.+---+.+..++ +|-.....++..- ....++.++|..+..+-.|++|.++|.+
T Consensus 760 ~drrDLAielr~klg------------------DwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~ 821 (1189)
T KOG2041|consen 760 ADRRDLAIELRKKLG------------------DWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSY 821 (1189)
T ss_pred cchhhhhHHHHHhhh------------------hHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 322110001111111 2222222222211 1137899999999999999999999987
Q ss_pred HHcCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHh----hcCCHHHHHHHHHHHHhcCCCCcHHHHH
Q 002375 774 ALDIKHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS----EYSDREMAKNDLNMATQLDPLRTYPYRY 849 (929)
Q Consensus 774 al~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg----~~~~~~~A~~~~~~al~l~p~~~~~~~~ 849 (929)
.-.. .++..+++...++++ ++.+...-|++...+-.++ ..|--++|.+.|-+.-. | .+
T Consensus 822 ~~~~------e~~~ecly~le~f~~----LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~--p---ka--- 883 (1189)
T KOG2041|consen 822 CGDT------ENQIECLYRLELFGE----LEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSL--P---KA--- 883 (1189)
T ss_pred ccch------HhHHHHHHHHHhhhh----HHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhccC--c---HH---
Confidence 6432 345566666666554 3344444566655555554 34555667666654211 1 11
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHH-HHHHHHcCCHHHHHHHHHHH
Q 002375 850 RAAVLMDDQKEVEAVEELSKAIAFKPDLQMLHLR-AAFYESIGDLTSAIRDSQAA 903 (929)
Q Consensus 850 la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~l-a~~~~~~g~~~~A~~~~~~a 903 (929)
--......++|.+|.+..++- .-|....+..+ +.-+...++..+|++.++++
T Consensus 884 Av~tCv~LnQW~~avelaq~~--~l~qv~tliak~aaqll~~~~~~eaIe~~Rka 936 (1189)
T KOG2041|consen 884 AVHTCVELNQWGEAVELAQRF--QLPQVQTLIAKQAAQLLADANHMEAIEKDRKA 936 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHhc--cchhHHHHHHHHHHHHHhhcchHHHHHHhhhc
Confidence 112344556677777665432 12333444433 55556678888888888877
No 293
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=96.07 E-value=3.6 Score=54.39 Aligned_cols=362 Identities=13% Similarity=0.061 Sum_probs=188.5
Q ss_pred HHHHHHHHhCCHHHHHHHHHHH-hcccC---CHhHHHHHHHHHHHhccHHHHHHHHHHHHhhcCCchhhhccccHHHHHH
Q 002375 520 YRAVAKMEEGQIRAAISEIDRI-IVFKL---SVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVK 595 (929)
Q Consensus 520 ~~a~~~~~~g~~~~A~~~~~~a-l~~~~---~~~~~~~~a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~a~~ll~ 595 (929)
.+|.+-++.+.|..|+.++++- ..-.+ ....+..+-.+|...++++.-....... ..+|+-. ..-
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r-~a~~sl~----------~qi 1456 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARR-FADPSLY----------QQI 1456 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHh-hcCccHH----------HHH
Confidence 4566777888888888888873 11111 2223445555777777777766555431 1122211 122
Q ss_pred HHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHH
Q 002375 596 LLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHE 675 (929)
Q Consensus 596 ~~~~~~~~~~~A~~~l~l~~~~~~~d~~~al~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~ 675 (929)
......|+|..| .++|+++++.+|+....+...-...+..|.+...+...+-.....++...
T Consensus 1457 l~~e~~g~~~da------------------~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~ 1518 (2382)
T KOG0890|consen 1457 LEHEASGNWADA------------------AACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVD 1518 (2382)
T ss_pred HHHHhhccHHHH------------------HHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHH
Confidence 344566777766 66778999998888877777777777888888888877776666666555
Q ss_pred HHHHHH-HHHHHcCCHHHHHHHHHHHHhhccchHHHHH--HHHHHHhcC-CCCCChHHHHHHHHHH-hhchhcc-Cch--
Q 002375 676 RLVYEG-WILYDTGHREEALSRAEKSISIERTFEAFFL--KAYILADTN-LDPESSTYVIQLLEEA-LRCPSDG-LRK-- 747 (929)
Q Consensus 676 ~~~~lg-~~~~~~g~~~eA~~~~~~al~l~p~~~a~~~--l~~~l~~~~-~~~~~~~~a~~~~~~A-l~~~~~~-l~~-- 747 (929)
-++.+| .+.++.++++.-..+.. +.+.+.|.. +|..+.... .+.-.....+....+. ++-+..+ ...
T Consensus 1519 ~~~s~~~eaaW~l~qwD~~e~~l~-----~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy 1593 (2382)
T KOG0890|consen 1519 ELNSLGVEAAWRLSQWDLLESYLS-----DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSY 1593 (2382)
T ss_pred HHHHHHHHHHhhhcchhhhhhhhh-----cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchH
Confidence 555554 34467777776555543 111111111 233222221 1111111111111100 0000000 000
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHcC----CChHHHHHHHHHHHHhCCHHHHHHHHHHHHH---Hcc----CCHHH
Q 002375 748 GQALNNLGSIYVECGKLDQAENCYINALDI----KHTRAHQGLARVYYLKNELKAAYDEMTKLLE---KAQ----YSASA 816 (929)
Q Consensus 748 ~~a~~~lg~~~~~~g~~~eA~~~~~~al~~----~~~~a~~~la~~~~~~g~~~~A~~~~~~al~---~~p----~~~~~ 816 (929)
...|..+-..+. .-+.+.-++...+.-.. ...+-|.+....-....+..+-+-.+++++- .+| ...+.
T Consensus 1594 ~~~Y~~~~kLH~-l~el~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~ 1672 (2382)
T KOG0890|consen 1594 VRSYEILMKLHL-LLELENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGEC 1672 (2382)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHH
Confidence 011111111110 01111111111111100 1112333333222222223344444444432 122 23456
Q ss_pred HHHHh----hcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCc-------h-----H
Q 002375 817 FEKRS----EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFK-PDL-------Q-----M 879 (929)
Q Consensus 817 ~~~lg----~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~-p~~-------~-----~ 879 (929)
|.+.+ ..|+++.|...+-+|.+.. -+.++...|..+...|+...|+..+++.++.+ |+. + .
T Consensus 1673 wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~ 1750 (2382)
T KOG0890|consen 1673 WLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLL 1750 (2382)
T ss_pred HHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhh
Confidence 77666 4688899988888888766 57889999999999999999999999999653 321 1 1
Q ss_pred HH-----HHHHHHHHcCCH--HHHHHHHHHHhccCCCCHHHHHHHH
Q 002375 880 LH-----LRAAFYESIGDL--TSAIRDSQAALCLDPNHMETLDLYN 918 (929)
Q Consensus 880 ~~-----~la~~~~~~g~~--~~A~~~~~~al~l~P~~~~a~~~~~ 918 (929)
.+ ..+......|+. ++-++.|..+.++.|...+.+..++
T Consensus 1751 i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~ 1796 (2382)
T KOG0890|consen 1751 IFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLG 1796 (2382)
T ss_pred hhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHH
Confidence 11 224555555653 3457789999999996655544444
No 294
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.02 E-value=0.099 Score=50.98 Aligned_cols=65 Identities=18% Similarity=0.122 Sum_probs=51.0
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhcccCCHhHHHHHHHHHHHhccHHHHHHHHHHHHhhcCCch
Q 002375 518 YKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLALESNYM 582 (929)
Q Consensus 518 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~al~~~p~~~ 582 (929)
-..+|.+...+|++++|+..++..-+-.-.+.....+|.++...|+-++|+..|+++++..+...
T Consensus 129 ~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~ 193 (207)
T COG2976 129 ALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESDASPA 193 (207)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChH
Confidence 45678889999999999988887752222444477889999999999999999999998875544
No 295
>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only]
Probab=96.01 E-value=0.024 Score=61.10 Aligned_cols=90 Identities=17% Similarity=0.119 Sum_probs=70.7
Q ss_pred EEEEEcCeEEEehhHHHhccC--HHHHHHhcCCCCcCCCCe--eEecCCCCCHHHHHHHhhhhccCCCCCCCHhHH-HHH
Q 002375 220 VTFCVRDKEISFVRNKIASLS--SPFKAMLYGGFVESKRKT--IDFSHDGVSVEGLRAVEVYTRTSRVDLFCPGIV-LEL 294 (929)
Q Consensus 220 v~~~v~~~~~~~hr~iLaa~S--~~F~~m~~~~~~e~~~~~--i~~~~~~~~~~~~~~~l~~~yt~~~~~~~~~~~-~~l 294 (929)
|.|-|||+.|.-.+.-|+--. .+|-++|++.|.-...+. |-| |=+|+.|..+|+|+.||.++ ++.-.. ..+
T Consensus 13 V~lNVGGriF~Ts~qTL~~~~~DSffsaL~s~~~~s~~~~~~~iFI---DRDPdlFaviLn~LRTg~L~-~~g~~~~~ll 88 (465)
T KOG2714|consen 13 VKLNVGGRIFETSAQTLTWIPRDSFFSALLSGRINSLKDESGAIFI---DRDPDLFAVILNLLRTGDLD-ASGVFPERLL 88 (465)
T ss_pred EEEecCceEEecchhhhhcCCcchHHHHHhcCccccccCCCCceEe---cCCchHHHHHHHHHhcCCCC-CccCchhhhh
Confidence 999999999999999986544 799999998886554443 655 66899999999999999999 544333 344
Q ss_pred HHHhchhChHhHHH---HHHHH
Q 002375 295 LSFANRFCCEEMKS---ACDAH 313 (929)
Q Consensus 295 l~~A~~~~~~~l~~---~C~~~ 313 (929)
..=|-+|++++|.+ +|+..
T Consensus 89 hdEA~fYGl~~llrrl~~~~~~ 110 (465)
T KOG2714|consen 89 HDEAMFYGLTPLLRRLTLCEEL 110 (465)
T ss_pred hhhhhhcCcHHHHHHhhcCccc
Confidence 44899999999886 45443
No 296
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=96.00 E-value=0.0078 Score=53.68 Aligned_cols=40 Identities=10% Similarity=0.231 Sum_probs=37.5
Q ss_pred HHHHHHHHHhhChHHHHHHHHHHHhhhhhhhcCcchhhhh
Q 002375 324 ALILIDYGLEERATLLVASCLQVLLRELPSSLYNPKVMKI 363 (929)
Q Consensus 324 ~~~~~~~a~~~~~~~L~~~c~~~i~~~~~~~~~~~~f~~L 363 (929)
|+.++.+|..|++.+|...|.+||..||.+++.+++|.+|
T Consensus 1 C~~i~~~A~~~~~~~L~~~~~~~i~~nf~~v~~~~~f~~L 40 (103)
T PF07707_consen 1 CLSIYRLAEKYGLEELAEACLRFIAKNFNEVSKSDEFLEL 40 (103)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTHHHHTTSHHHHCS
T ss_pred ChhHHHHHHHcChHHHHHHHHHHHHHHHHHHccchhhhcC
Confidence 8999999999999999999999999999999999999876
No 297
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=95.99 E-value=2.2 Score=47.37 Aligned_cols=171 Identities=15% Similarity=0.032 Sum_probs=110.9
Q ss_pred CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccC-----CHhHHHHHHHHHHHhccHHHHHHHHHHHHhhcCCch-hh
Q 002375 511 DPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-----SVDCLELRAWLFIAADDYESALRDTLALLALESNYM-MF 584 (929)
Q Consensus 511 ~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~-----~~~~~~~~a~~~~~~g~~~eA~~~~~~al~~~p~~~-~~ 584 (929)
.......|...+.+..+.|+++.|...+.++....+ .|......+.+....|+..+|+..++..+....... ..
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~ 221 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDS 221 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccc
Confidence 556677899999999999999999999999986552 567788889999999999999999999887322211 00
Q ss_pred hccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHHHHh------cCHHH
Q 002375 585 HGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRL------NCQKA 658 (929)
Q Consensus 585 ~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~d~~~al~~~~~al~~~p~~~~~~~~lg~~~~~~------g~~~~ 658 (929)
.. ......+..+ ..+.. . .. ..........+.++..+|...... +..++
T Consensus 222 ~~--~~~~~~~~~~----~~~~~-------------~-~~-----~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~ 276 (352)
T PF02259_consen 222 IS--NAELKSGLLE----SLEVI-------------S-ST-----NLDKESKELKAKAFLLLAKWLDELYSKLSSESSDE 276 (352)
T ss_pred cc--HHHHhhcccc----ccccc-------------c-cc-----chhhhhHHHHHHHHHHHHHHHHhhccccccccHHH
Confidence 00 0000000000 00000 0 00 000000011245667777777777 88999
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHcCC-----------------HHHHHHHHHHHHhhccc
Q 002375 659 AMRCLRLARNHSSSEHERLVYEGWILYDTGH-----------------REEALSRAEKSISIERT 706 (929)
Q Consensus 659 A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~-----------------~~eA~~~~~~al~l~p~ 706 (929)
++..|+++.+.+|+...+|+.+|..+...-+ ...|+..|-+++...++
T Consensus 277 ~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 277 ILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred HHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 9999999999999999999988887655322 13356666666666555
No 298
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=95.93 E-value=0.014 Score=39.90 Aligned_cols=32 Identities=31% Similarity=0.317 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhccc
Q 002375 675 ERLVYEGWILYDTGHREEALSRAEKSISIERT 706 (929)
Q Consensus 675 ~~~~~lg~~~~~~g~~~eA~~~~~~al~l~p~ 706 (929)
.+|+.+|.++..+|++++|+..|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 45666677777777777777777777766663
No 299
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=95.77 E-value=0.46 Score=52.03 Aligned_cols=150 Identities=14% Similarity=0.013 Sum_probs=106.0
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHhcC------------HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHH
Q 002375 627 AVINQMLINDPGKSFLRFRQSLLLLRLNC------------QKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEAL 694 (929)
Q Consensus 627 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~------------~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~ 694 (929)
..+++.++.+|.+..+|..+....-..-. .+.-+..|++|++.+|++...+..+-....+..+.++..
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~ 85 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLA 85 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 34578889999999999988776544422 456678899999999999999888888888888999999
Q ss_pred HHHHHHHhhccch-HHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCch---------------hHHHHHHHHHH
Q 002375 695 SRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRK---------------GQALNNLGSIY 758 (929)
Q Consensus 695 ~~~~~al~l~p~~-~a~~~l~~~l~~~~~~~~~~~~a~~~~~~Al~~~~~~l~~---------------~~a~~~lg~~~ 758 (929)
+.+++++..+|++ ..|......... ....-........|.+++..+...... ...+..+....
T Consensus 86 ~~we~~l~~~~~~~~LW~~yL~~~q~-~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl 164 (321)
T PF08424_consen 86 KKWEELLFKNPGSPELWREYLDFRQS-NFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFL 164 (321)
T ss_pred HHHHHHHHHCCCChHHHHHHHHHHHH-HhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHH
Confidence 9999999999988 555443333222 123344556666677776655544221 14455566666
Q ss_pred HHcCCHHHHHHHHHHHHcC
Q 002375 759 VECGKLDQAENCYINALDI 777 (929)
Q Consensus 759 ~~~g~~~eA~~~~~~al~~ 777 (929)
...|..+.|+..++..++.
T Consensus 165 ~~aG~~E~Ava~~Qa~lE~ 183 (321)
T PF08424_consen 165 RQAGYTERAVALWQALLEF 183 (321)
T ss_pred HHCCchHHHHHHHHHHHHH
Confidence 6777777777777777666
No 300
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=95.71 E-value=0.032 Score=54.55 Aligned_cols=90 Identities=17% Similarity=0.159 Sum_probs=75.5
Q ss_pred EEEEEcCeEEEehhHHHhccCH--HHHHHhcCC---CCcCCCCeeEecCCCCCHHHHHHHhhhhccCCCCCCCHhHHHHH
Q 002375 220 VTFCVRDKEISFVRNKIASLSS--PFKAMLYGG---FVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFCPGIVLEL 294 (929)
Q Consensus 220 v~~~v~~~~~~~hr~iLaa~S~--~F~~m~~~~---~~e~~~~~i~~~~~~~~~~~~~~~l~~~yt~~~~~~~~~~~~~l 294 (929)
|.+-|+|+.|..-+--|..|-| -..+||.+. -.|++++-+-| |-+|.-|+.+|.|+..|.++..+.-+++++
T Consensus 11 vrlnigGk~f~TTidTlv~rEPDSMLa~MF~~~g~~~~~d~kGa~lI---DRsp~yFepIlNyLr~Gq~~~~s~i~~lgv 87 (302)
T KOG1665|consen 11 VRLNIGGKKFCTTIDTLVIREPDSMLAAMFSGRGAMCQEDKKGAVLI---DRSPKYFEPILNYLRDGQIPSLSDIDCLGV 87 (302)
T ss_pred heeecCCeEEEEeehhhcccCchHHHHHHHccCCCccccccCceEEE---ccCchhhHHHHHHHhcCceeecCCccHHHH
Confidence 9999999999877777776643 578899753 34566667777 668999999999999999997788899999
Q ss_pred HHHhchhChHhHHHHHHH
Q 002375 295 LSFANRFCCEEMKSACDA 312 (929)
Q Consensus 295 l~~A~~~~~~~l~~~C~~ 312 (929)
|..|++|++-+|++.-+.
T Consensus 88 LeeArff~i~sL~~hle~ 105 (302)
T KOG1665|consen 88 LEEARFFQILSLKDHLED 105 (302)
T ss_pred HHHhhHHhhHhHHhHHhh
Confidence 999999999999988776
No 301
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.71 E-value=0.15 Score=48.64 Aligned_cols=62 Identities=24% Similarity=0.095 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002375 641 FLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSIS 702 (929)
Q Consensus 641 ~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~ 702 (929)
.+...++..+...|++++|+..+++++..+|.+..++..+..+|...|+..+|+..|++..+
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 45667888899999999999999999999999999999999999999999999999998765
No 302
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=95.67 E-value=5.5 Score=45.75 Aligned_cols=176 Identities=12% Similarity=-0.104 Sum_probs=134.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHcC--CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccC-CHHHHHHHh----
Q 002375 749 QALNNLGSIYVECGKLDQAENCYINALDI--KHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQY-SASAFEKRS---- 821 (929)
Q Consensus 749 ~a~~~lg~~~~~~g~~~eA~~~~~~al~~--~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg---- 821 (929)
..|..........|+++...-.|++++-- .....|...+.-....|+.+-|...+..+.+..-. .+.+...-+
T Consensus 298 ~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e 377 (577)
T KOG1258|consen 298 KNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEE 377 (577)
T ss_pred HHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHH
Confidence 56777777788899999999999999876 67789999999999999999999888888776533 333333323
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHH---HHHHHHHhcCCCch---HHH-HHHHH-HHHcCCH
Q 002375 822 EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAV---EELSKAIAFKPDLQ---MLH-LRAAF-YESIGDL 893 (929)
Q Consensus 822 ~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~---~~l~kal~~~p~~~---~~~-~la~~-~~~~g~~ 893 (929)
..|+++.|...+++...--|....+-...+......|+.+.+. +.+.....-..+.. .++ ..+.. +.-.++.
T Consensus 378 ~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~ 457 (577)
T KOG1258|consen 378 SNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDA 457 (577)
T ss_pred hhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCH
Confidence 5689999999999999877988888888888888999999888 44444433332322 122 22333 3347899
Q ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHhhh
Q 002375 894 TSAIRDSQAALCLDPNHMETLDLYNRARDQA 924 (929)
Q Consensus 894 ~~A~~~~~~al~l~P~~~~a~~~~~~l~~~~ 924 (929)
+.|...+.+++...|.+...+.-+.++....
T Consensus 458 ~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~ 488 (577)
T KOG1258|consen 458 DLARIILLEANDILPDCKVLYLELIRFELIQ 488 (577)
T ss_pred HHHHHHHHHhhhcCCccHHHHHHHHHHHHhC
Confidence 9999999999999999999888877776543
No 303
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=95.63 E-value=2.1 Score=46.16 Aligned_cols=123 Identities=22% Similarity=0.084 Sum_probs=79.5
Q ss_pred HHHHHHHHHHH----cCCHHHHHHHHHHHHcCCChHH---HHHHHHHHHHhC-------CHHHHHHHHHHHHHHccCCHH
Q 002375 750 ALNNLGSIYVE----CGKLDQAENCYINALDIKHTRA---HQGLARVYYLKN-------ELKAAYDEMTKLLEKAQYSAS 815 (929)
Q Consensus 750 a~~~lg~~~~~----~g~~~eA~~~~~~al~~~~~~a---~~~la~~~~~~g-------~~~~A~~~~~~al~~~p~~~~ 815 (929)
+.+++|.+|.. ..++.+|..+|+++.+.+++.+ .+.++..|..-+ +...|...|.++-... +..
T Consensus 111 a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~ 188 (292)
T COG0790 111 ALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPD 188 (292)
T ss_pred HHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHH
Confidence 45555555554 3477788888888887766666 777777766542 1235777777766554 444
Q ss_pred HHHHHh--------hcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcC---------------CHHHHHHHHHHHHh
Q 002375 816 AFEKRS--------EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQ---------------KEVEAVEELSKAIA 872 (929)
Q Consensus 816 ~~~~lg--------~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g---------------~~~eA~~~l~kal~ 872 (929)
+...+| --.+..+|..+|.++.+... ..+.+.++ ++...| +...|...+.++..
T Consensus 189 a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~ 265 (292)
T COG0790 189 AQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACE 265 (292)
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHH
Confidence 444444 23477888888888888776 77788888 666555 66666676666665
Q ss_pred cCCCc
Q 002375 873 FKPDL 877 (929)
Q Consensus 873 ~~p~~ 877 (929)
..+..
T Consensus 266 ~~~~~ 270 (292)
T COG0790 266 LGFDN 270 (292)
T ss_pred cCChh
Confidence 54443
No 304
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=95.43 E-value=3.7 Score=46.58 Aligned_cols=90 Identities=11% Similarity=0.049 Sum_probs=67.2
Q ss_pred HHhCCHHHHHHHHHHHHHHccCCHHH-HHHHh----hcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHH
Q 002375 791 YLKNELKAAYDEMTKLLEKAQYSASA-FEKRS----EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVE 865 (929)
Q Consensus 791 ~~~g~~~~A~~~~~~al~~~p~~~~~-~~~lg----~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~ 865 (929)
...|+...|+..+..++...|....+ ..+++ .+|-...|-..+.+++.+....+-.++.+|..++...+.+.|++
T Consensus 618 r~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~ 697 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALE 697 (886)
T ss_pred eecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHH
Confidence 44688888888888888777764432 23333 44556677788888888887777778888888888888888888
Q ss_pred HHHHHHhcCCCchHH
Q 002375 866 ELSKAIAFKPDLQML 880 (929)
Q Consensus 866 ~l~kal~~~p~~~~~ 880 (929)
.|++|++.+|+.+..
T Consensus 698 ~~~~a~~~~~~~~~~ 712 (886)
T KOG4507|consen 698 AFRQALKLTTKCPEC 712 (886)
T ss_pred HHHHHHhcCCCChhh
Confidence 888888888887643
No 305
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.42 E-value=0.022 Score=39.65 Aligned_cols=28 Identities=32% Similarity=0.544 Sum_probs=24.4
Q ss_pred HHHHhhHHHHhcccHHHHHHHHHHHHhc
Q 002375 421 ALHQLGCVMFEREEYKDACYYFEAAADA 448 (929)
Q Consensus 421 ~~~~lG~~~~~~g~y~~A~~~f~~al~~ 448 (929)
++..||.+|...|+|++|+.+|++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4678999999999999999999997765
No 306
>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones]
Probab=95.35 E-value=0.093 Score=50.27 Aligned_cols=99 Identities=15% Similarity=0.181 Sum_probs=74.7
Q ss_pred cCeEEEehhHHHhccCHHHHHHhcC-CCCcCCCCeeEecCCCCCHHHHHHHhhhhccCCCC-----------------C-
Q 002375 225 RDKEISFVRNKIASLSSPFKAMLYG-GFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVD-----------------L- 285 (929)
Q Consensus 225 ~~~~~~~hr~iLaa~S~~F~~m~~~-~~~e~~~~~i~~~~~~~~~~~~~~~l~~~yt~~~~-----------------~- 285 (929)
+|+.|.+-+.+ |-.|...++|+.. |..... ..|.| ++|+..+|+.|++|++.-+-+ .
T Consensus 13 DG~~f~ve~~~-a~~s~~i~~~~~~~~~~~~~-~~IPl--~nV~~~iL~kVIewC~~Hk~d~~~~~~~~~~~~~~~i~~W 88 (162)
T KOG1724|consen 13 DGEIFEVEEEV-ARQSQTISAHMIEDGCADEN-DPIPL--PNVTSKILKKVIEWCKKHKDDDPANPEDKELPEETDIPEW 88 (162)
T ss_pred CCceeehhHHH-HHHhHHHHHHHHHcCCCccC-Ccccc--CccCHHHHHHHHHHHHHcccccccccccccccccCCccHH
Confidence 67777777665 4778888888863 333222 57888 889999999999999874421 0
Q ss_pred ------CCHhHHHHHHHHhchhChHhHHHHHHHHHHhhcC--ChhhHHHH
Q 002375 286 ------FCPGIVLELLSFANRFCCEEMKSACDAHLASLVG--DIEDALIL 327 (929)
Q Consensus 286 ------~~~~~~~~ll~~A~~~~~~~l~~~C~~~l~~~~~--~~~n~~~~ 327 (929)
++.+++.+|+.+|+.+.+..|...|++.+..++. |++....+
T Consensus 89 D~~Flk~d~~tLfdli~AAnyLdi~gLl~~~ck~va~mikgktpeEir~~ 138 (162)
T KOG1724|consen 89 DAEFLKVDQGTLFDLILAANYLDIKGLLDLTCKTVANMIKGKTPEEIREI 138 (162)
T ss_pred HHHHHhcCHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHccCCHHHHHHH
Confidence 4446899999999999999999999999999885 24444433
No 307
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.12 E-value=0.89 Score=43.30 Aligned_cols=58 Identities=19% Similarity=0.159 Sum_probs=35.3
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhcccC-CHhHHHHHHHHHHHhccHHHHHHHHHHHH
Q 002375 518 YKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLALL 575 (929)
Q Consensus 518 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~~g~~~eA~~~~~~al 575 (929)
...++..+...|++++|+..+++++..+| +...+..+..++...|+..+|++.|++..
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 33445556666677777777777766666 45556666666666777777766666654
No 308
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=95.05 E-value=0.069 Score=55.13 Aligned_cols=66 Identities=23% Similarity=0.202 Sum_probs=52.1
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCchHHH-HHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHH
Q 002375 854 LMDDQKEVEAVEELSKAIAFKPDLQMLH-LRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNR 919 (929)
Q Consensus 854 ~~~~g~~~eA~~~l~kal~~~p~~~~~~-~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~ 919 (929)
..+.|+.++|...|+.|+.+.|+++... -.|.+....++.-+|-.+|-+||.++|.|.+++.++.|
T Consensus 126 ~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R 192 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR 192 (472)
T ss_pred HHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence 4557888888888888888888887665 45888887888888888888888888888888777665
No 309
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=94.90 E-value=14 Score=46.15 Aligned_cols=326 Identities=13% Similarity=0.052 Sum_probs=162.0
Q ss_pred HHHHHHhccHHHHHHHHHHHHhhcCCchhhhccccHHHHHHHHHHh-----hc--ccchHHHHHHhhhccccccccccHH
Q 002375 555 AWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHH-----VR--SWSPADCWIKLYDRWSSVDDIGSLA 627 (929)
Q Consensus 555 a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~a~~ll~~~~~~-----~~--~~~~A~~~l~l~~~~~~~d~~~al~ 627 (929)
..+++..+.|+.|+..|+++-.-.|....- + ++..-.|..... .+ .+++| +.
T Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~ 540 (932)
T PRK13184 482 PDAFLAEKLYDQALIFYRRIRESFPGRKEG--Y-EAQFRLGITLLEKASEQGDPRDFTQA------------------LS 540 (932)
T ss_pred cHHHHhhHHHHHHHHHHHHHhhcCCCcccc--h-HHHHHhhHHHHHHHHhcCChHHHHHH------------------HH
Confidence 344566778888888888888877776511 1 333333333211 11 22222 22
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHh
Q 002375 628 VINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDT-----GHREEALSRAEKSIS 702 (929)
Q Consensus 628 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~-----g~~~eA~~~~~~al~ 702 (929)
.+++ +...|..|.-|...|.+|.++|++++-+++|.-|++..|++|..-...-.+-+++ .+...|....--++.
T Consensus 541 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 619 (932)
T PRK13184 541 EFSY-LHGGVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREALVFMLLALW 619 (932)
T ss_pred HHHH-hcCCCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222 3345778888999999999999999999999999999999876544433333322 123455555556666
Q ss_pred hccch-H---HHHHHHHHHHhcC------CCCCChHHHHHHHHHHhhch-----------hcc--CchhHHHHHHHHHHH
Q 002375 703 IERTF-E---AFFLKAYILADTN------LDPESSTYVIQLLEEALRCP-----------SDG--LRKGQALNNLGSIYV 759 (929)
Q Consensus 703 l~p~~-~---a~~~l~~~l~~~~------~~~~~~~~a~~~~~~Al~~~-----------~~~--l~~~~a~~~lg~~~~ 759 (929)
..|.. . .-..+-....... +++......-..++--+..+ +++ +++-.+..+.=.+..
T Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 699 (932)
T PRK13184 620 IAPEKISSREEEKFLEILYHKQQATLFCQLDKTPLQFRSSKMELFLSFWSGFTPFLPELFQRAWDLRDYRALADIFYVAC 699 (932)
T ss_pred hCcccccchHHHHHHHHHHhhccCCceeeccCchhhhhhhhHHHHHHHHhcCchhhHHHHHHHhhcccHHHHHHHHHHHH
Confidence 66654 1 1111111111110 11111111111111111111 111 112244444555557
Q ss_pred HcCCHHHHHHHHHHHHcC----CChH-H----------HHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHH-H---HHHH
Q 002375 760 ECGKLDQAENCYINALDI----KHTR-A----------HQGLARVYYLKNELKAAYDEMTKLLEKAQYSAS-A---FEKR 820 (929)
Q Consensus 760 ~~g~~~eA~~~~~~al~~----~~~~-a----------~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-~---~~~l 820 (929)
..|.++-+.+.....-+. +-+. . +..-..+......++++.+.+.+. .|.... + +...
T Consensus 700 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 776 (932)
T PRK13184 700 DLGNWEFFSQFSDILAEVSDEITFTESIVEQKVEELMFFLKGLEALSNKEDYEKAFKHLDNT---DPTLILYAFDLFAIQ 776 (932)
T ss_pred HhccHHHHHHHHHHHHHHhhhccchHHHHhhhHHHHHHHHHHHHHHHccccHHHHHhhhhhC---CHHHHHHHHHHHHHH
Confidence 788887665544333211 1111 1 111122333444555555433222 222111 1 1111
Q ss_pred hhc-CCH---HHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHh---cCCCchHHHHHHHHHHHcCCH
Q 002375 821 SEY-SDR---EMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIA---FKPDLQMLHLRAAFYESIGDL 893 (929)
Q Consensus 821 g~~-~~~---~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~---~~p~~~~~~~la~~~~~~g~~ 893 (929)
+.. ++. -.+++.+.+...-.............+|+-..++++|-+.+.+.-. .+..++...+.|..+...++.
T Consensus 777 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 856 (932)
T PRK13184 777 ALLDEEGESIIQLLQLIYDYVSEEERHDHLLVYEIQAHLWNRDLKKAYKLLNRYPLDLLLDEYSEAFVLYGCYLALTEDR 856 (932)
T ss_pred HHHhccchHHHHHHHHHHhccCChhhhhhhhHHHHHHHHHhccHHHHHHHHHhCChhhhccccchHHHHHHHHHHhcCch
Confidence 111 111 2222222222211112233444566677788899999888843211 112223333558888889999
Q ss_pred HHHHHHHHHHhc
Q 002375 894 TSAIRDSQAALC 905 (929)
Q Consensus 894 ~~A~~~~~~al~ 905 (929)
+-|..+|....+
T Consensus 857 ~~~~~~~~~~~~ 868 (932)
T PRK13184 857 EAAKAHFSGCRE 868 (932)
T ss_pred hHHHHHHhhccc
Confidence 999999988873
No 310
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.89 E-value=0.041 Score=38.29 Aligned_cols=30 Identities=27% Similarity=0.380 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhcc
Q 002375 676 RLVYEGWILYDTGHREEALSRAEKSISIER 705 (929)
Q Consensus 676 ~~~~lg~~~~~~g~~~eA~~~~~~al~l~p 705 (929)
++..+|.+|...|++++|+.+|++++.+.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~ 30 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALAR 30 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 467888889999999999999988765543
No 311
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=94.88 E-value=1.4 Score=48.85 Aligned_cols=147 Identities=12% Similarity=-0.004 Sum_probs=100.4
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------------CC------------ch---HHHHHHH
Q 002375 630 NQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNH--------------SS------------SE---HERLVYE 680 (929)
Q Consensus 630 ~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~--------------~p------------~~---~~~~~~l 680 (929)
...+..+|.+.+.+..++.++..+|+.+.|.+.+++|+-. ++ .| ..+.+..
T Consensus 30 ~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~ 109 (360)
T PF04910_consen 30 INLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRY 109 (360)
T ss_pred HHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHH
Confidence 4566778999999999999999999999999998888521 11 11 2244556
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhccch-HHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHH
Q 002375 681 GWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYV 759 (929)
Q Consensus 681 g~~~~~~g~~~eA~~~~~~al~l~p~~-~a~~~l~~~l~~~~~~~~~~~~a~~~~~~Al~~~~~~l~~~~a~~~lg~~~~ 759 (929)
...+.+.|-+..|.+..+-.+.++|.. .. .+...+-....
T Consensus 110 i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~---------------------------------------g~ll~ID~~AL 150 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLSLDPDEDPL---------------------------------------GVLLFIDYYAL 150 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCcc---------------------------------------hhHHHHHHHHH
Confidence 778889999999999999999999984 11 11222222233
Q ss_pred HcCCHHHHHHHHHHHHcC-------CChHHHHHHHHHHHHhCCH---------------HHHHHHHHHHHHHccCCHH
Q 002375 760 ECGKLDQAENCYINALDI-------KHTRAHQGLARVYYLKNEL---------------KAAYDEMTKLLEKAQYSAS 815 (929)
Q Consensus 760 ~~g~~~eA~~~~~~al~~-------~~~~a~~~la~~~~~~g~~---------------~~A~~~~~~al~~~p~~~~ 815 (929)
+.++|+--++.++..... .-|..-+..+.+++..++. +.|...+.+|+...|.-..
T Consensus 151 rs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~vl~ 228 (360)
T PF04910_consen 151 RSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWVLV 228 (360)
T ss_pred hcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHHHH
Confidence 344444444444443331 1335667777788888877 8889999999888775443
No 312
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=94.83 E-value=0.053 Score=36.57 Aligned_cols=33 Identities=27% Similarity=0.378 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCC
Q 002375 781 RAHQGLARVYYLKNELKAAYDEMTKLLEKAQYS 813 (929)
Q Consensus 781 ~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 813 (929)
++++.+|.++...|++++|.+.|+++++..|++
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 467888999999999999999999999888864
No 313
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=94.75 E-value=0.045 Score=36.95 Aligned_cols=31 Identities=23% Similarity=0.118 Sum_probs=15.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 002375 846 PYRYRAAVLMDDQKEVEAVEELSKAIAFKPD 876 (929)
Q Consensus 846 ~~~~la~~~~~~g~~~eA~~~l~kal~~~p~ 876 (929)
+++.+|.++...|++++|+..|+++++..|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 3444455555555555555555555544443
No 314
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.70 E-value=7.3 Score=41.70 Aligned_cols=227 Identities=12% Similarity=0.029 Sum_probs=122.0
Q ss_pred HHhcCHHHHHHHHHHHHhc----CCch----HHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhccchHHHHHHHHHHHhcC
Q 002375 651 LRLNCQKAAMRCLRLARNH----SSSE----HERLVYEGWILYDTG-HREEALSRAEKSISIERTFEAFFLKAYILADTN 721 (929)
Q Consensus 651 ~~~g~~~~A~~~l~~al~~----~p~~----~~~~~~lg~~~~~~g-~~~eA~~~~~~al~l~p~~~a~~~l~~~l~~~~ 721 (929)
.++|+++.|..++.++-.. +|+. ....++.|......+ ++++|...++++.++-... ....
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~----------~~~~ 73 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKP----------GKMD 73 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhh----------hhcc
Confidence 4679999999999998654 3443 456678888889999 9999999999998863210 0000
Q ss_pred CCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHH---HHHHHHcC--CChHHHHHHHHHHHHhCCH
Q 002375 722 LDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAEN---CYINALDI--KHTRAHQGLARVYYLKNEL 796 (929)
Q Consensus 722 ~~~~~~~~a~~~~~~Al~~~~~~l~~~~a~~~lg~~~~~~g~~~eA~~---~~~~al~~--~~~~a~~~la~~~~~~g~~ 796 (929)
....... . ....++..++.+|...+.++...+ ..+.+... +++..+...-.+....++.
T Consensus 74 ~~~~~~~----e------------lr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~ 137 (278)
T PF08631_consen 74 KLSPDGS----E------------LRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDE 137 (278)
T ss_pred ccCCcHH----H------------HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCCh
Confidence 0000000 0 012457778888888777654333 33333222 3444443334444447788
Q ss_pred HHHHHHHHHHHHHcc-C--CHHH-HHHHh--hcCCHHHHHHHHHHHHh--cCCCCcHHHHHHHH---HHHhcC--C----
Q 002375 797 KAAYDEMTKLLEKAQ-Y--SASA-FEKRS--EYSDREMAKNDLNMATQ--LDPLRTYPYRYRAA---VLMDDQ--K---- 859 (929)
Q Consensus 797 ~~A~~~~~~al~~~p-~--~~~~-~~~lg--~~~~~~~A~~~~~~al~--l~p~~~~~~~~la~---~~~~~g--~---- 859 (929)
+++.+.+.+++...+ . +... ..... .......|...+...+. ..|.... |..... +++..+ +
T Consensus 138 ~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~-~~e~~vl~~~~~~~~~~~~~~~ 216 (278)
T PF08631_consen 138 EEYEEILMRMIRSVDHSESNFDSILHHIKQLAEKSPELAAFCLDYLLLNRFKSSEDQ-WLEKLVLTRVLLTTQSKDLSSS 216 (278)
T ss_pred hHHHHHHHHHHHhcccccchHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCChhH-HHHHHHHHHHHHHcCCccccch
Confidence 888888888886543 1 1111 11110 11233455555555543 2332221 322221 222222 2
Q ss_pred --HHHHHHHHHHHHhc--CCCc-h-------HHHHHHHHHHHcCCHHHHHHHHHHHh
Q 002375 860 --EVEAVEELSKAIAF--KPDL-Q-------MLHLRAAFYESIGDLTSAIRDSQAAL 904 (929)
Q Consensus 860 --~~eA~~~l~kal~~--~p~~-~-------~~~~la~~~~~~g~~~~A~~~~~~al 904 (929)
.+.....+....+. .|-. . .++..|...++.++|+.|.++|+-++
T Consensus 217 ~~i~~l~~~~~~v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 217 EKIESLEELLSIVEHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred hHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 22222333322111 1111 1 22355999999999999999999776
No 315
>smart00875 BACK BTB And C-terminal Kelch. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues.
Probab=94.58 E-value=0.033 Score=49.26 Aligned_cols=40 Identities=10% Similarity=0.162 Sum_probs=37.4
Q ss_pred HHHHHHHHHhhChHHHHHHHHHHHhhhhhhhcCcchhhhh
Q 002375 324 ALILIDYGLEERATLLVASCLQVLLRELPSSLYNPKVMKI 363 (929)
Q Consensus 324 ~~~~~~~a~~~~~~~L~~~c~~~i~~~~~~~~~~~~f~~L 363 (929)
|+.++.+|..|++..|...|.+||.+||..+.++++|..|
T Consensus 1 c~~i~~~a~~~~~~~L~~~~~~~i~~nf~~~~~~~~f~~L 40 (101)
T smart00875 1 CLGIRRFAELYGLEELLEKALRFILKNFLEVAQSEEFLEL 40 (101)
T ss_pred CHhHHHHHHHhChHHHHHHHHHHHHHHHHHHhcCcHHhcC
Confidence 6788999999999999999999999999999999999876
No 316
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=94.57 E-value=1.5 Score=48.75 Aligned_cols=76 Identities=16% Similarity=0.072 Sum_probs=59.1
Q ss_pred HHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhc---------c-----cC-------------CHh---HHHHHHH
Q 002375 507 ASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIV---------F-----KL-------------SVD---CLELRAW 556 (929)
Q Consensus 507 al~l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~---------~-----~~-------------~~~---~~~~~a~ 556 (929)
.+..+|-...+++.++.++..+|+...|.+.+++++- + +. +.. ++.....
T Consensus 32 ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~ 111 (360)
T PF04910_consen 32 LLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQ 111 (360)
T ss_pred HHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHH
Confidence 4567899999999999999999999999999988862 1 11 000 1333444
Q ss_pred HHHHhccHHHHHHHHHHHHhhcCC-ch
Q 002375 557 LFIAADDYESALRDTLALLALESN-YM 582 (929)
Q Consensus 557 ~~~~~g~~~eA~~~~~~al~~~p~-~~ 582 (929)
...+.|-+..|++..+-++.++|. |+
T Consensus 112 ~L~~RG~~rTAlE~~KlLlsLdp~~DP 138 (360)
T PF04910_consen 112 SLGRRGCWRTALEWCKLLLSLDPDEDP 138 (360)
T ss_pred HHHhcCcHHHHHHHHHHHHhcCCCCCc
Confidence 556789999999999999999999 76
No 317
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=94.56 E-value=0.17 Score=40.19 Aligned_cols=55 Identities=24% Similarity=0.196 Sum_probs=43.2
Q ss_pred EEEEE-cCeEEEehhHHHhccCHHHHHHhcCCCCcCCCCeeEecCCCCCHHHHHHHhhhhc
Q 002375 220 VTFCV-RDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTR 279 (929)
Q Consensus 220 v~~~v-~~~~~~~hr~iLaa~S~~F~~m~~~~~~e~~~~~i~~~~~~~~~~~~~~~l~~~y 279 (929)
|+++- +|+.|.+.+.++ -.|..++.||.+.-.+.. .|.+ ++|+..+++.+++|++
T Consensus 3 v~L~SsDg~~f~V~~~~a-~~S~~i~~ml~~~~~~~~--~Ipl--~~v~~~~L~kViewc~ 58 (62)
T PF03931_consen 3 VKLVSSDGQEFEVSREAA-KQSKTIKNMLEDLGDEDE--PIPL--PNVSSRILKKVIEWCE 58 (62)
T ss_dssp EEEEETTSEEEEEEHHHH-TTSHHHHHHHHCTCCCGT--EEEE--TTS-HHHHHHHHHHHH
T ss_pred EEEEcCCCCEEEeeHHHH-HHhHHHHHHHhhhccccc--cccc--CccCHHHHHHHHHHHH
Confidence 44554 788999988876 599999999986443333 7999 9999999999999986
No 318
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=94.52 E-value=0.67 Score=47.28 Aligned_cols=95 Identities=18% Similarity=0.262 Sum_probs=67.0
Q ss_pred hcCHHHHHHHHHHHHhc----C-C--chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHHHHHhcCCCCC
Q 002375 653 LNCQKAAMRCLRLARNH----S-S--SEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPE 725 (929)
Q Consensus 653 ~g~~~~A~~~l~~al~~----~-p--~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~l~p~~~a~~~l~~~l~~~~~~~~ 725 (929)
...+++|++.|.-|+-. . + .-+..+..+||+|...|+.+.....+++|+.
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~----------------------- 146 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALE----------------------- 146 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHH-----------------------
Confidence 34567777777666532 1 1 2266788899999999998888888777776
Q ss_pred ChHHHHHHHHHHhhchhc---cCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC
Q 002375 726 SSTYVIQLLEEALRCPSD---GLRKGQALNNLGSIYVECGKLDQAENCYINALDI 777 (929)
Q Consensus 726 ~~~~a~~~~~~Al~~~~~---~l~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~ 777 (929)
.|++|.+.-.. .+......+.+|.+..+.|++++|..+|.+++..
T Consensus 147 -------~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 147 -------FYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred -------HHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 33333332222 1223467888999999999999999999999987
No 319
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.30 E-value=0.77 Score=43.88 Aligned_cols=32 Identities=9% Similarity=-0.001 Sum_probs=18.2
Q ss_pred CCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 002375 841 PLRTYPYRYRAAVLMDDQKEVEAVEELSKAIA 872 (929)
Q Consensus 841 p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~ 872 (929)
|-...+.-.||..-++.|++.+|...|.+...
T Consensus 164 ~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 164 PMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred hhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 33344445555566666666666666665555
No 320
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=94.26 E-value=3.2 Score=45.89 Aligned_cols=38 Identities=13% Similarity=0.146 Sum_probs=29.5
Q ss_pred cCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHhhhhhh
Q 002375 890 IGDLTSAIRDSQAALCLDPNHMETLDLYNRARDQASHQ 927 (929)
Q Consensus 890 ~g~~~~A~~~~~~al~l~P~~~~a~~~~~~l~~~~~~~ 927 (929)
.|+.++|+..+-..-.+.|+-......+..+-+.-++.
T Consensus 711 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 748 (831)
T PRK15180 711 EGRLDEALSVLISLKRIEPDVSRLMREYKQIIRLFNES 748 (831)
T ss_pred cccHHHHHHHHHhhhccCccHHHHHHHHHHHHHHhhhh
Confidence 47889999999888889999888777777776554443
No 321
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=94.20 E-value=0.19 Score=38.27 Aligned_cols=34 Identities=35% Similarity=0.367 Sum_probs=28.8
Q ss_pred hHHHHHHHHHHHhccHHHHHHHHHHHHhhcCCch
Q 002375 549 DCLELRAWLFIAADDYESALRDTLALLALESNYM 582 (929)
Q Consensus 549 ~~~~~~a~~~~~~g~~~eA~~~~~~al~~~p~~~ 582 (929)
++++.+|..++++|+|++|....+.+++..|++.
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~ 35 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNR 35 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-H
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcH
Confidence 5677888899999999999999999999999998
No 322
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.18 E-value=2.6 Score=43.19 Aligned_cols=223 Identities=10% Similarity=0.020 Sum_probs=126.6
Q ss_pred hhHHHHHHHHHHhcCCCCh----HHHHHHHHHHHHhCCHHHHHHHHHHHhcccC-------CHhHHHHHHHHHHHhccHH
Q 002375 497 GREKIVDLNYASELDPTLS----FPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-------SVDCLELRAWLFIAADDYE 565 (929)
Q Consensus 497 ~~~Ai~~~~~al~l~P~~~----~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~-------~~~~~~~~a~~~~~~g~~~ 565 (929)
.++|+..|++++++.|.-. .++...-.+.+++++|++-...|.+.+..-. +..+...+-..-....+.+
T Consensus 43 p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~ 122 (440)
T KOG1464|consen 43 PKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMD 122 (440)
T ss_pred HHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhH
Confidence 3489999999999998765 3666777889999999999988888763221 1111111111111222222
Q ss_pred HHHHHHHH---HHhhcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhh-ccccccccccHHHHHHHHhcCCCChH
Q 002375 566 SALRDTLA---LLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYD-RWSSVDDIGSLAVINQMLINDPGKSF 641 (929)
Q Consensus 566 eA~~~~~~---al~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~-~~~~~d~~~al~~~~~al~~~p~~~~ 641 (929)
--...|+. +++...+...|+ ....-+|.++...+.|.+-.+.++... .....+.. .-.+....-..
T Consensus 123 LLQ~FYeTTL~ALkdAKNeRLWF---KTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGe-------dD~kKGtQLLE 192 (440)
T KOG1464|consen 123 LLQEFYETTLDALKDAKNERLWF---KTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGE-------DDQKKGTQLLE 192 (440)
T ss_pred HHHHHHHHHHHHHHhhhcceeee---eccchHhhhheeHHHHHHHHHHHHHHHHHhccccCc-------hhhhccchhhh
Confidence 22233332 333333333232 344557777777777766544442211 11000000 00000111123
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCch--HHHHHH----HHHHHHHcCCHHHHHHHHHHHHhhccch--------
Q 002375 642 LRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE--HERLVY----EGWILYDTGHREEALSRAEKSISIERTF-------- 707 (929)
Q Consensus 642 ~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~--~~~~~~----lg~~~~~~g~~~eA~~~~~~al~l~p~~-------- 707 (929)
.|..-...|..+.+..+-...|++++.+...- |.+.-- =|..+.+.|++++|-..|-+|++.....
T Consensus 193 iYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttC 272 (440)
T KOG1464|consen 193 IYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTC 272 (440)
T ss_pred hHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHH
Confidence 44455567788888888888899988765433 222222 2677889999999999998888764222
Q ss_pred HHHHHHHHHHHhcCCCCCChHH
Q 002375 708 EAFFLKAYILADTNLDPESSTY 729 (929)
Q Consensus 708 ~a~~~l~~~l~~~~~~~~~~~~ 729 (929)
--|..++..+...+++|-...+
T Consensus 273 LKYLVLANMLmkS~iNPFDsQE 294 (440)
T KOG1464|consen 273 LKYLVLANMLMKSGINPFDSQE 294 (440)
T ss_pred HHHHHHHHHHHHcCCCCCcccc
Confidence 2355667777777777655444
No 323
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.15 E-value=6.3 Score=44.74 Aligned_cols=82 Identities=20% Similarity=0.086 Sum_probs=65.9
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccC---CHhHHHHHHHHHHHhccHHHHHHHHHHH
Q 002375 498 REKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL---SVDCLELRAWLFIAADDYESALRDTLAL 574 (929)
Q Consensus 498 ~~Ai~~~~~al~l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~---~~~~~~~~a~~~~~~g~~~eA~~~~~~a 574 (929)
+...+.+.......|+++...+..|..+...|+.+.|+..++..+...- ..-+++.+|+++..+.+|..|-..+...
T Consensus 250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L 329 (546)
T KOG3783|consen 250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIPIRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLL 329 (546)
T ss_pred HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 4445556666778999999999999999999999999999998885111 3445889999999999999999999888
Q ss_pred HhhcC
Q 002375 575 LALES 579 (929)
Q Consensus 575 l~~~p 579 (929)
.....
T Consensus 330 ~desd 334 (546)
T KOG3783|consen 330 RDESD 334 (546)
T ss_pred Hhhhh
Confidence 76643
No 324
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=93.85 E-value=13 Score=41.31 Aligned_cols=143 Identities=9% Similarity=-0.014 Sum_probs=86.3
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhcccCCH------hHHHHHHHHHHHhccHHHHHHHHHHHHhhcCCchhhhccccHH
Q 002375 518 YKYRAVAKMEEGQIRAAISEIDRIIVFKLSV------DCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGD 591 (929)
Q Consensus 518 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~------~~~~~~a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~a~ 591 (929)
....|-++.+++++.+|...|.++.+...+. +.+..+....+-+++.+.-...+-..-+..|..+ -..
T Consensus 9 lc~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~------~l~ 82 (549)
T PF07079_consen 9 LCFQGFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSA------YLP 82 (549)
T ss_pred HHHhhHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCch------HHH
Confidence 4456888999999999999999997554422 2233333333445666666666655556666555 344
Q ss_pred HHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 002375 592 HLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNH 669 (929)
Q Consensus 592 ~ll~~~~~~~~~~~~A~~~l~l~~~~~~~d~~~al~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~ 669 (929)
...+.+....+.+++|...+ ..|.+......-...+.-+..--.+-..-...+.++...|++.++...+++.+..
T Consensus 83 LF~~L~~Y~~k~~~kal~~l---s~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~ 157 (549)
T PF07079_consen 83 LFKALVAYKQKEYRKALQAL---SVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIER 157 (549)
T ss_pred HHHHHHHHHhhhHHHHHHHH---HHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 56777788888999984444 4454431111100011111111112223345678889999999999999988753
No 325
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.78 E-value=1.9 Score=41.15 Aligned_cols=80 Identities=21% Similarity=0.132 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch-HHHHHHHHHHHhc
Q 002375 642 LRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADT 720 (929)
Q Consensus 642 ~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~l~p~~-~a~~~l~~~l~~~ 720 (929)
.+......-...++.+++...+....-+.|..++.-..-|+++...|++.+|+..++.+..-.|.. -.--.++.++...
T Consensus 12 gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~ 91 (160)
T PF09613_consen 12 GLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYAL 91 (160)
T ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHc
Confidence 445556666777899999999999999999999999999999999999999999999988877776 4445555665555
Q ss_pred C
Q 002375 721 N 721 (929)
Q Consensus 721 ~ 721 (929)
+
T Consensus 92 ~ 92 (160)
T PF09613_consen 92 G 92 (160)
T ss_pred C
Confidence 4
No 326
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=93.72 E-value=14 Score=41.03 Aligned_cols=380 Identities=11% Similarity=-0.019 Sum_probs=205.3
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccC-CHhHHHHHHHHHHHhccHHHHHHHHHHHHhhcCCc
Q 002375 503 DLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLALLALESNY 581 (929)
Q Consensus 503 ~~~~al~l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~~g~~~eA~~~~~~al~~~p~~ 581 (929)
.+..-++-+|++...|+.+-.-+..++.+++-.+.|++...--| -+.+|...-.--+..+++......|-+.+...-+-
T Consensus 30 rLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~l 109 (660)
T COG5107 30 RLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLNL 109 (660)
T ss_pred HHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhccH
Confidence 56667888999999999999999999999999999999984333 33333332222344467777777777777643332
Q ss_pred hhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHH---HhcCCCChHHHHHHHHHHHH------
Q 002375 582 MMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQM---LINDPGKSFLRFRQSLLLLR------ 652 (929)
Q Consensus 582 ~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~d~~~al~~~~~a---l~~~p~~~~~~~~lg~~~~~------ 652 (929)
..|. ..+..+... ...-++..-. .-..+|+-. .-.+|.....|...+..+..
T Consensus 110 dLW~------lYl~YIRr~-n~~~tGq~r~------------~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~k 170 (660)
T COG5107 110 DLWM------LYLEYIRRV-NNLITGQKRF------------KIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGK 170 (660)
T ss_pred hHHH------HHHHHHHhh-Ccccccchhh------------hhHHHHHHHHhcccccccccchHHHHHHHHHhcccccc
Confidence 2110 011111111 1110000000 002222222 23467777777777666532
Q ss_pred ---hcCHHHHHHHHHHHHhcCCchHH-HHHHHHH---------HHHH----cCCHHHHHHHHHHHHhhc-------cch-
Q 002375 653 ---LNCQKAAMRCLRLARNHSSSEHE-RLVYEGW---------ILYD----TGHREEALSRAEKSISIE-------RTF- 707 (929)
Q Consensus 653 ---~g~~~~A~~~l~~al~~~p~~~~-~~~~lg~---------~~~~----~g~~~eA~~~~~~al~l~-------p~~- 707 (929)
+.+.+.-...|.+++...-++.+ .|...-. +-.- .--|-.|...|++...+- |-+
T Consensus 171 wEeQqrid~iR~~Y~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~ 250 (660)
T COG5107 171 WEEQQRIDKIRNGYMRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINL 250 (660)
T ss_pred HHHHHHHHHHHHHHHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhh
Confidence 34455566677777765444322 2221111 1111 112455666666654432 211
Q ss_pred -----------HHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCc----hhHHHHHHHHHHHHcCCHHHHHHHHH
Q 002375 708 -----------EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLR----KGQALNNLGSIYVECGKLDQAENCYI 772 (929)
Q Consensus 708 -----------~a~~~l~~~l~~~~~~~~~~~~a~~~~~~Al~~~~~~l~----~~~a~~~lg~~~~~~g~~~eA~~~~~ 772 (929)
..|.+....-...+++.+..... .+.--.+.+++. .++.|+.....+...++-+.|+...+
T Consensus 251 Rt~nK~~r~s~S~WlNwIkwE~en~l~L~~~~~~----qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~ 326 (660)
T COG5107 251 RTANKAARTSDSNWLNWIKWEMENGLKLGGRPHE----QRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVE 326 (660)
T ss_pred hhhccccccccchhhhHhhHhhcCCcccCCCcHH----HHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 11222222222222222111110 000111122222 24677777777788888899998888
Q ss_pred HHHcCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc---------------cCCH----HHHHHHh------------
Q 002375 773 NALDIKHTRAHQGLARVYYLKNELKAAYDEMTKLLEKA---------------QYSA----SAFEKRS------------ 821 (929)
Q Consensus 773 ~al~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~---------------p~~~----~~~~~lg------------ 821 (929)
+++...+. ....++..|...++-++-...|+++++.- .++. +....+-
T Consensus 327 rg~~~sps-L~~~lse~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N 405 (660)
T COG5107 327 RGIEMSPS-LTMFLSEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLN 405 (660)
T ss_pred hcccCCCc-hheeHHHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHH
Confidence 88776443 66677777777777666666555554210 0111 1111111
Q ss_pred ---hcCCHHHHHHHHHHHHhcCCCCcHHHHHHHH-HHHhcCCHHHHHHHHHHHHhcCCCchHHHHH-HHHHHHcCCHHHH
Q 002375 822 ---EYSDREMAKNDLNMATQLDPLRTYPYRYRAA-VLMDDQKEVEAVEELSKAIAFKPDLQMLHLR-AAFYESIGDLTSA 896 (929)
Q Consensus 822 ---~~~~~~~A~~~~~~al~l~p~~~~~~~~la~-~~~~~g~~~eA~~~l~kal~~~p~~~~~~~l-a~~~~~~g~~~~A 896 (929)
...-.+.|...|.++-+..-....+|..-|. -+...|++.-|-..|+-.+...|+++.+... -..+...++-..|
T Consensus 406 ~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~na 485 (660)
T COG5107 406 YVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENA 485 (660)
T ss_pred HHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHH
Confidence 1123466777777766544333334433332 2456788889999999988888888877643 5566678888888
Q ss_pred HHHHHHHhcc
Q 002375 897 IRDSQAALCL 906 (929)
Q Consensus 897 ~~~~~~al~l 906 (929)
...|++++..
T Consensus 486 raLFetsv~r 495 (660)
T COG5107 486 RALFETSVER 495 (660)
T ss_pred HHHHHHhHHH
Confidence 8888877654
No 327
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=93.68 E-value=0.58 Score=40.39 Aligned_cols=47 Identities=17% Similarity=0.144 Sum_probs=23.1
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc
Q 002375 626 LAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSS 672 (929)
Q Consensus 626 l~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~ 672 (929)
+..+++.++.+|++..+.+.+|..+...|++++|++.+-.+++.+++
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~ 54 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRD 54 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TT
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence 44445555555555555555555555555555555555555555443
No 328
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=93.65 E-value=0.19 Score=51.96 Aligned_cols=74 Identities=18% Similarity=0.033 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch-HHHHHHHH
Q 002375 642 LRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAY 715 (929)
Q Consensus 642 ~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~l~p~~-~a~~~l~~ 715 (929)
+-.+.+.-..+.|+.++|...|+.|+.+.|++++++..+|......++.-+|-.+|-+|+.+.|.+ ++..+...
T Consensus 118 ~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R 192 (472)
T KOG3824|consen 118 LALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR 192 (472)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence 334556666788999999999999999999999999999999999999999999999999999999 77665544
No 329
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=93.30 E-value=0.66 Score=40.03 Aligned_cols=64 Identities=17% Similarity=0.080 Sum_probs=51.7
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch---HHHHHHHHHHHhcCC
Q 002375 659 AMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF---EAFFLKAYILADTNL 722 (929)
Q Consensus 659 A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~l~p~~---~a~~~l~~~l~~~~~ 722 (929)
.+..+++.++.+|++..+.+.+|..+...|++++|++.+-.+++.++++ .+...+..++...|.
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 4567889999999999999999999999999999999999999999877 566666666666664
No 330
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=93.23 E-value=0.45 Score=42.17 Aligned_cols=29 Identities=17% Similarity=0.308 Sum_probs=19.5
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHccCCHH
Q 002375 787 ARVYYLKNELKAAYDEMTKLLEKAQYSAS 815 (929)
Q Consensus 787 a~~~~~~g~~~~A~~~~~~al~~~p~~~~ 815 (929)
|..++..|++-+|++.++..+...+++..
T Consensus 3 A~~~~~rGnhiKAL~iied~i~~h~~~~~ 31 (111)
T PF04781_consen 3 AKDYFARGNHIKALEIIEDLISRHGEDES 31 (111)
T ss_pred HHHHHHccCHHHHHHHHHHHHHHccCCCc
Confidence 45566677777777777777776666554
No 331
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]
Probab=93.15 E-value=0.76 Score=41.00 Aligned_cols=95 Identities=18% Similarity=0.127 Sum_probs=70.4
Q ss_pred EEEE-EcCeEEEehhHHHhccCHHHHHHhcCCCCcCCCCeeEecCCCCCHHHHHHHhhhhcc--CCCCC-----------
Q 002375 220 VTFC-VRDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRT--SRVDL----------- 285 (929)
Q Consensus 220 v~~~-v~~~~~~~hr~iLaa~S~~F~~m~~~~~~e~~~~~i~~~~~~~~~~~~~~~l~~~yt--~~~~~----------- 285 (929)
|.++ ++|+.|.+.+. +|-||--.+.|+.. +.+++- .|.. ++|+..+|+.+++|+-. +++.+
T Consensus 4 i~l~s~dge~F~vd~~-iAerSiLikN~l~d-~~~~n~-p~p~--pnVrSsvl~kv~ew~ehh~~s~sede~d~~~rks~ 78 (158)
T COG5201 4 IELESIDGEIFRVDEN-IAERSILIKNMLCD-STACNY-PIPA--PNVRSSVLMKVQEWMEHHTSSLSEDENDLEIRKSK 78 (158)
T ss_pred eEEEecCCcEEEehHH-HHHHHHHHHHHhcc-ccccCC-CCcc--cchhHHHHHHHHHHHHhccccCCCccChHhhhccC
Confidence 3444 46777877654 57888888888752 333322 2444 89999999999999953 33221
Q ss_pred -----------CCHhHHHHHHHHhchhChHhHHHHHHHHHHhhcC
Q 002375 286 -----------FCPGIVLELLSFANRFCCEEMKSACDAHLASLVG 319 (929)
Q Consensus 286 -----------~~~~~~~~ll~~A~~~~~~~l~~~C~~~l~~~~~ 319 (929)
++.++++++.-+||.+.+..|.+.|++.+.+.+.
T Consensus 79 p~D~wdr~Fm~vDqemL~eI~laaNYL~ikpLLd~gCKivaemir 123 (158)
T COG5201 79 PSDFWDRFFMEVDQEMLLEICLAANYLEIKPLLDLGCKIVAEMIR 123 (158)
T ss_pred CccHHHHHHHHhhHHHHHHHHHhhccccchHHHHHHHHHHHHHHc
Confidence 3446899999999999999999999999999887
No 332
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=92.99 E-value=0.16 Score=33.17 Aligned_cols=29 Identities=21% Similarity=0.180 Sum_probs=14.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 002375 847 YRYRAAVLMDDQKEVEAVEELSKAIAFKP 875 (929)
Q Consensus 847 ~~~la~~~~~~g~~~eA~~~l~kal~~~p 875 (929)
+..+|.++...+++++|+..++++++..|
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 44444455555555555555554444444
No 333
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=92.95 E-value=0.14 Score=33.49 Aligned_cols=32 Identities=28% Similarity=0.396 Sum_probs=28.6
Q ss_pred HHHHHhhHHHHhcccHHHHHHHHHHHHhcCcc
Q 002375 420 LALHQLGCVMFEREEYKDACYYFEAAADAGHI 451 (929)
Q Consensus 420 ~~~~~lG~~~~~~g~y~~A~~~f~~al~~~~~ 451 (929)
.+++.+|.++...|++++|+..|+++++.+|.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 35788999999999999999999999988764
No 334
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.92 E-value=2.7 Score=39.50 Aligned_cols=105 Identities=17% Similarity=0.089 Sum_probs=80.3
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch-HHHHHHHHHHHhcCCC
Q 002375 645 RQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLD 723 (929)
Q Consensus 645 ~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~l~p~~-~a~~~l~~~l~~~~~~ 723 (929)
.....-...++.+++...+....-+.|+.++....-|+++...|++.+|+..++....-.+.. -..-.++.++...+
T Consensus 15 ~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~-- 92 (153)
T TIGR02561 15 EVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKG-- 92 (153)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcC--
Confidence 333444558899999999999999999999999999999999999999999999998877665 44455666665555
Q ss_pred CCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002375 724 PESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINAL 775 (929)
Q Consensus 724 ~~~~~~a~~~~~~Al~~~~~~l~~~~a~~~lg~~~~~~g~~~eA~~~~~~al 775 (929)
...|...+......+...+|+...+...
T Consensus 93 ------------------------Dp~Wr~~A~~~le~~~~~~a~~Lv~al~ 120 (153)
T TIGR02561 93 ------------------------DAEWHVHADEVLARDADADAVALVRALL 120 (153)
T ss_pred ------------------------ChHHHHHHHHHHHhCCCHhHHHHHHHHh
Confidence 4556666666666777777766655444
No 335
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=92.78 E-value=1.7 Score=38.74 Aligned_cols=63 Identities=17% Similarity=0.171 Sum_probs=45.8
Q ss_pred cHHHHHHHHHHHhcCCHHHHHHHHHHHH-------hcCCCchHH-----HHHHHHHHHcCCHHHHHHHHHHHhcc
Q 002375 844 TYPYRYRAAVLMDDQKEVEAVEELSKAI-------AFKPDLQML-----HLRAAFYESIGDLTSAIRDSQAALCL 906 (929)
Q Consensus 844 ~~~~~~la~~~~~~g~~~eA~~~l~kal-------~~~p~~~~~-----~~la~~~~~~g~~~~A~~~~~~al~l 906 (929)
+..+-.|+.++..+|+|++++..-.+++ +++.+.... +.+|..+..+|+.++|+..|+.+-++
T Consensus 55 A~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 55 AFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 4456678888889999998877777766 455555332 36799999999999999999998654
No 336
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=92.56 E-value=26 Score=41.00 Aligned_cols=31 Identities=13% Similarity=0.095 Sum_probs=19.2
Q ss_pred cCCchHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002375 669 HSSSEHERLVYEGWILYDTGHREEALSRAEK 699 (929)
Q Consensus 669 ~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~ 699 (929)
.-|++.+.+-.+|..+...|--++|++.|-+
T Consensus 847 ~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 847 TLPEDSELLPVMADMFTSVGMCDQAVEAYLR 877 (1189)
T ss_pred hcCcccchHHHHHHHHHhhchHHHHHHHHHh
Confidence 3455556666666666666666666666543
No 337
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.55 E-value=6.8 Score=40.27 Aligned_cols=216 Identities=10% Similarity=0.077 Sum_probs=118.0
Q ss_pred HhCCHHHHHHHHHHHhcccC-CH----hHHHHHHHHHHHhccHHHHHHHHHHHHhhcCCchhh-hccccHHHHHHHHHHh
Q 002375 527 EEGQIRAAISEIDRIIVFKL-SV----DCLELRAWLFIAADDYESALRDTLALLALESNYMMF-HGRVSGDHLVKLLNHH 600 (929)
Q Consensus 527 ~~g~~~~A~~~~~~al~~~~-~~----~~~~~~a~~~~~~g~~~eA~~~~~~al~~~p~~~~~-~~~~~a~~ll~~~~~~ 600 (929)
...+.++|+..|++++++.+ .. .++-....+++.+++|++.+..|.+.+..-.....- +..-.....+..+...
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 34588999999999998887 22 235667778899999999999999887632111100 0000111111111100
Q ss_pred hcccchHHHHHHhhhccccccccccHHHHH---HHHhcCCCChHHH----HHHHHHHHHhcCHHHHHHHHHHHHhcCC--
Q 002375 601 VRSWSPADCWIKLYDRWSSVDDIGSLAVIN---QMLINDPGKSFLR----FRQSLLLLRLNCQKAAMRCLRLARNHSS-- 671 (929)
Q Consensus 601 ~~~~~~A~~~l~l~~~~~~~d~~~al~~~~---~al~~~p~~~~~~----~~lg~~~~~~g~~~~A~~~l~~al~~~p-- 671 (929)
.+.+ ++ -..|+ .+++ +..+..+| ..+|.+|+..++|.+-...+++.-....
T Consensus 119 -~~m~----LL--------------Q~FYeTTL~ALk-dAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~e 178 (440)
T KOG1464|consen 119 -KNMD----LL--------------QEFYETTLDALK-DAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTE 178 (440)
T ss_pred -hhhH----HH--------------HHHHHHHHHHHH-hhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccc
Confidence 0000 00 00111 1222 22333444 3688899999988887777766543321
Q ss_pred ----------chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHH---HHHhcCCCCCChHHHHHHHHHHh
Q 002375 672 ----------SEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAY---ILADTNLDPESSTYVIQLLEEAL 738 (929)
Q Consensus 672 ----------~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~l~p~~~a~~~l~~---~l~~~~~~~~~~~~a~~~~~~Al 738 (929)
.-.++|..-..+|-.+.+-.+-...|++++.+..--+--..+|. +=+...+..+....+..++=+|.
T Consensus 179 dGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAF 258 (440)
T KOG1464|consen 179 DGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAF 258 (440)
T ss_pred cCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHH
Confidence 11345555567777888888888889998876532210011222 22233355566666666666666
Q ss_pred hchhccCchh----HHHHHHHHHHHHcC
Q 002375 739 RCPSDGLRKG----QALNNLGSIYVECG 762 (929)
Q Consensus 739 ~~~~~~l~~~----~a~~~lg~~~~~~g 762 (929)
+.|..+-.|. --|..+++.+...|
T Consensus 259 KNYDEsGspRRttCLKYLVLANMLmkS~ 286 (440)
T KOG1464|consen 259 KNYDESGSPRRTTCLKYLVLANMLMKSG 286 (440)
T ss_pred hcccccCCcchhHHHHHHHHHHHHHHcC
Confidence 6666553321 33455555555543
No 338
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=92.51 E-value=1.2 Score=45.41 Aligned_cols=93 Identities=19% Similarity=0.016 Sum_probs=57.6
Q ss_pred cCCHHHHHHHHHHHHcC------CC---hHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHhhcCCHHHHHH
Q 002375 761 CGKLDQAENCYINALDI------KH---TRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKN 831 (929)
Q Consensus 761 ~g~~~eA~~~~~~al~~------~~---~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~A~~ 831 (929)
...+++|++.|.-|+-. .+ ...+..+|.+|...|+.+.....+++|++.
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~---------------------- 147 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEF---------------------- 147 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHH----------------------
Confidence 34566666666666543 11 246777888888888866666666555443
Q ss_pred HHHHHHhcCC------CCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 002375 832 DLNMATQLDP------LRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPD 876 (929)
Q Consensus 832 ~~~~al~l~p------~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~ 876 (929)
|.++..... +.....+.+|.+..+.|++++|..+|.+++.....
T Consensus 148 -y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~ 197 (214)
T PF09986_consen 148 -YEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKA 197 (214)
T ss_pred -HHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence 444443322 12345666777777777777777777777765433
No 339
>KOG1778 consensus CREB binding protein/P300 and related TAZ Zn-finger proteins [Transcription]
Probab=92.33 E-value=0.064 Score=57.32 Aligned_cols=145 Identities=14% Similarity=0.102 Sum_probs=115.5
Q ss_pred EEEEEcCeEEEehhHHHhccCHHHHHHhcCCCCcCCCCeeEecCCCCCHHHHHHHhhhhccCCCCC-CCHhHHHHHHHHh
Q 002375 220 VTFCVRDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDL-FCPGIVLELLSFA 298 (929)
Q Consensus 220 v~~~v~~~~~~~hr~iLaa~S~~F~~m~~~~~~e~~~~~i~~~~~~~~~~~~~~~l~~~yt~~~~~-~~~~~~~~ll~~A 298 (929)
+++......+++|+.+|...|+.|..+....-.-+....+.+ -+++...+..+..|.|.+ +.. --......++.+.
T Consensus 29 ~~~~~~~~~~~~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~c~~~~~~~~~l~~~-~ek~e~~~~~ihll~~~ 105 (319)
T KOG1778|consen 29 EIVTDVKDLIPAHSLVLGPASPVFKKVLKQPCRKSLVKGNKI--LGVPCKAVNVFIRFLYSS-LEKHEMVFFDIHLLALS 105 (319)
T ss_pred hhhhhhhhhhHHHHhcccccchHHHHHHhhhcchhhhhccee--ecccccccchhhhhhccc-hhhhHHHHHHHHHHhhh
Confidence 444445567899999999999999988876633334456777 788999999999999988 441 1123456788888
Q ss_pred chhChHhHHHHHHHHHHhhcCChhhHHHHHHHHHhhChHHHHHHHHHHHhhhhhhhcCcchhhhhhccc
Q 002375 299 NRFCCEEMKSACDAHLASLVGDIEDALILIDYGLEERATLLVASCLQVLLRELPSSLYNPKVMKIFCSS 367 (929)
Q Consensus 299 ~~~~~~~l~~~C~~~l~~~~~~~~n~~~~~~~a~~~~~~~L~~~c~~~i~~~~~~~~~~~~f~~L~~~~ 367 (929)
..+-++.++..|+..+...+-+..|++.++..+..+....|...+...|...|....+++.....-|+.
T Consensus 106 ~~~~v~~~~~d~~~~~~~~~~~~r~~flvl~~~~~~~~~~lr~a~hss~~~~~~~H~~t~~~~~~~c~~ 174 (319)
T KOG1778|consen 106 HVYVVPQPKADCDPILECGLFDKRNVFLVLQLAEHCDFSDLRRAKHSSIMLLFDLHLQTEKWFAYTCPI 174 (319)
T ss_pred hhhhccCccccCCccccchhhhhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcccCceeeecCc
Confidence 899999999999999988443399999999999999999999999999999999988887776654443
No 340
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=92.05 E-value=25 Score=39.72 Aligned_cols=86 Identities=9% Similarity=-0.126 Sum_probs=56.7
Q ss_pred CCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHH-HHHHH--HHcCCHHHHHHHHHHHhccCCCCHHHHHHH
Q 002375 841 PLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLHL-RAAFY--ESIGDLTSAIRDSQAALCLDPNHMETLDLY 917 (929)
Q Consensus 841 p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~-la~~~--~~~g~~~~A~~~~~~al~l~P~~~~a~~~~ 917 (929)
|+....-..+-..+.+.|-+.+|...|.+...+.|-+-.++. .-.+- ...-+...+..+|+.++.-...+++.|..|
T Consensus 457 ~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~~lw~~y 536 (568)
T KOG2396|consen 457 ADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADSDLWMDY 536 (568)
T ss_pred CceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCChHHHHHH
Confidence 344444445556677788888999999888887766655541 11111 112347888889998888877888888887
Q ss_pred HHHHhhhhh
Q 002375 918 NRARDQASH 926 (929)
Q Consensus 918 ~~l~~~~~~ 926 (929)
=..+...+.
T Consensus 537 ~~~e~~~g~ 545 (568)
T KOG2396|consen 537 MKEELPLGR 545 (568)
T ss_pred HHhhccCCC
Confidence 766654433
No 341
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=91.85 E-value=10 Score=41.51 Aligned_cols=82 Identities=15% Similarity=-0.096 Sum_probs=61.5
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHhCC------------HHHHHHHHHHHhcccC-CHhHHHHHHHHHHHhccHHHH
Q 002375 501 IVDLNYASELDPTLSFPYKYRAVAKMEEGQ------------IRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESA 567 (929)
Q Consensus 501 i~~~~~al~l~P~~~~a~~~~a~~~~~~g~------------~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~~g~~~eA 567 (929)
...|++.++.+|.+..+|+.+....-..-. .+.-+..+++|++.+| +...+..+-....+..+-++.
T Consensus 5 ~~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l 84 (321)
T PF08424_consen 5 TAELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKL 84 (321)
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 456788899999999999888765443322 4566788899998877 555555555566667788888
Q ss_pred HHHHHHHHhhcCCch
Q 002375 568 LRDTLALLALESNYM 582 (929)
Q Consensus 568 ~~~~~~al~~~p~~~ 582 (929)
.+.+++++..+|++.
T Consensus 85 ~~~we~~l~~~~~~~ 99 (321)
T PF08424_consen 85 AKKWEELLFKNPGSP 99 (321)
T ss_pred HHHHHHHHHHCCCCh
Confidence 889999999999877
No 342
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.83 E-value=3.6 Score=39.37 Aligned_cols=100 Identities=16% Similarity=0.063 Sum_probs=73.7
Q ss_pred cCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHH-HHHHHHHHcCCHHHHHHHHH
Q 002375 823 YSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLH-LRAAFYESIGDLTSAIRDSQ 901 (929)
Q Consensus 823 ~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~-~la~~~~~~g~~~~A~~~~~ 901 (929)
.++.+++...+...--+.|..+..-..-|.+++..|+|.+|+..|+.+.+..|..+... +++.|+..+||.+= ..+-.
T Consensus 23 ~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~W-r~~A~ 101 (160)
T PF09613_consen 23 LGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPSW-RRYAD 101 (160)
T ss_pred cCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChHH-HHHHH
Confidence 45667777777777778888888889999999999999999999999888888777666 66888888888652 22234
Q ss_pred HHhccCCCCHHHHHHHHHHHhhh
Q 002375 902 AALCLDPNHMETLDLYNRARDQA 924 (929)
Q Consensus 902 ~al~l~P~~~~a~~~~~~l~~~~ 924 (929)
.+++.+| ++++..+...+....
T Consensus 102 evle~~~-d~~a~~Lv~~Ll~~~ 123 (160)
T PF09613_consen 102 EVLESGA-DPDARALVRALLARA 123 (160)
T ss_pred HHHhcCC-ChHHHHHHHHHHHhc
Confidence 4555554 566666666655443
No 343
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=91.41 E-value=0.33 Score=34.64 Aligned_cols=30 Identities=23% Similarity=0.275 Sum_probs=26.4
Q ss_pred HHHHHHhhHHHHhcccHHHHHHHHHHHHhc
Q 002375 419 MLALHQLGCVMFEREEYKDACYYFEAAADA 448 (929)
Q Consensus 419 a~~~~~lG~~~~~~g~y~~A~~~f~~al~~ 448 (929)
+.++..+|.+|..+|+|++|+.++++++++
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 457889999999999999999999999986
No 344
>PRK10941 hypothetical protein; Provisional
Probab=91.40 E-value=1.5 Score=46.37 Aligned_cols=66 Identities=14% Similarity=-0.003 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch
Q 002375 642 LRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF 707 (929)
Q Consensus 642 ~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~l~p~~ 707 (929)
...++-.+|.+.++++.|+.+.+..+...|+++.-+...|.+|.++|.+..|+..++..++..|+.
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~d 248 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPED 248 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCc
Confidence 345677789999999999999999999999999999999999999999999999999999999988
No 345
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=91.22 E-value=4.9 Score=36.01 Aligned_cols=101 Identities=16% Similarity=0.209 Sum_probs=63.2
Q ss_pred HHHHHHhCCHHHHHHHHHHHhcccC-------------CHhHHHHHHHHHHHhccHHHHHHHHHHHHhhcCCchhhhccc
Q 002375 522 AVAKMEEGQIRAAISEIDRIIVFKL-------------SVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRV 588 (929)
Q Consensus 522 a~~~~~~g~~~~A~~~~~~al~~~~-------------~~~~~~~~a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~ 588 (929)
|.-....|-|++|...+.++++... +.-++..++..+..+|+|++++..-..+|......
T Consensus 16 ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRR------- 88 (144)
T PF12968_consen 16 AERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRR------- 88 (144)
T ss_dssp HHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhc-------
Confidence 3445667889999999998886543 12236666777788899999888877776532111
Q ss_pred cHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 002375 589 SGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARN 668 (929)
Q Consensus 589 ~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~d~~~al~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~ 668 (929)
|.+ +-++...|+ .+.+.++..+..+|+.++|+..|+.+-+
T Consensus 89 ------GEL-----~qdeGklWI-----------------------------aaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 89 ------GEL-----HQDEGKLWI-----------------------------AAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp --------T-----TSTHHHHHH-----------------------------HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred ------ccc-----ccccchhHH-----------------------------HHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 111 112222333 2446777888888999999999888755
Q ss_pred c
Q 002375 669 H 669 (929)
Q Consensus 669 ~ 669 (929)
.
T Consensus 129 M 129 (144)
T PF12968_consen 129 M 129 (144)
T ss_dssp H
T ss_pred H
Confidence 3
No 346
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=90.99 E-value=0.6 Score=39.06 Aligned_cols=52 Identities=13% Similarity=0.138 Sum_probs=38.3
Q ss_pred CCHhHHHHHHHHhchhChHhHHHHHHHHHHhhcC--ChhhHHHHHHHHHhhChH
Q 002375 286 FCPGIVLELLSFANRFCCEEMKSACDAHLASLVG--DIEDALILIDYGLEERAT 337 (929)
Q Consensus 286 ~~~~~~~~ll~~A~~~~~~~l~~~C~~~l~~~~~--~~~n~~~~~~~a~~~~~~ 337 (929)
++.+.+.+|+.+|+.++++.|...|++.+...+. |++....++.....+.-.
T Consensus 11 ~~~~~L~~l~~AA~yL~I~~L~~~~~~~iA~~i~gks~eeir~~fgi~~d~t~e 64 (78)
T PF01466_consen 11 VDNDELFDLLNAANYLDIKGLLDLCCKYIANMIKGKSPEEIRKYFGIENDLTPE 64 (78)
T ss_dssp S-HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-HHHHHHHHT---TSSHH
T ss_pred cCHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhcCCCHHHHHHHcCCCCCCCHH
Confidence 5678999999999999999999999999999986 466666666665554433
No 347
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=90.83 E-value=2.3 Score=37.78 Aligned_cols=28 Identities=18% Similarity=0.029 Sum_probs=19.5
Q ss_pred HHHHHHhccHHHHHHHHHHHHhhcCCch
Q 002375 555 AWLFIAADDYESALRDTLALLALESNYM 582 (929)
Q Consensus 555 a~~~~~~g~~~eA~~~~~~al~~~p~~~ 582 (929)
+.-++..|++-+|+++.+..+...+++.
T Consensus 3 A~~~~~rGnhiKAL~iied~i~~h~~~~ 30 (111)
T PF04781_consen 3 AKDYFARGNHIKALEIIEDLISRHGEDE 30 (111)
T ss_pred HHHHHHccCHHHHHHHHHHHHHHccCCC
Confidence 4556667777777777777777766665
No 348
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=90.75 E-value=5 Score=39.65 Aligned_cols=118 Identities=20% Similarity=0.214 Sum_probs=81.2
Q ss_pred HHHHHhhchhccCch---hHHHHHHHHHHHHcCCHHHHHHHHHHHHcCC-----ChHHHHHHHHHHHHhCCHHHHHHHHH
Q 002375 733 LLEEALRCPSDGLRK---GQALNNLGSIYVECGKLDQAENCYINALDIK-----HTRAHQGLARVYYLKNELKAAYDEMT 804 (929)
Q Consensus 733 ~~~~Al~~~~~~l~~---~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~-----~~~a~~~la~~~~~~g~~~~A~~~~~ 804 (929)
.++.-++.++...-+ ..++..+|..|.+.|++++|+++|.++.+.. ..+.+..+.++....+++........
T Consensus 18 ~Le~elk~~~~n~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ 97 (177)
T PF10602_consen 18 KLEAELKDAKSNLGKESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIE 97 (177)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 444444444433322 3788999999999999999999999988872 22678888999999999999998888
Q ss_pred HHHHHccCCHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 002375 805 KLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFK 874 (929)
Q Consensus 805 ~al~~~p~~~~~~~~lg~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~ 874 (929)
++-.......+ |..+ ...-..-|..++..++|.+|-..|-.+..-.
T Consensus 98 ka~~~~~~~~d-~~~~-----------------------nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 98 KAESLIEKGGD-WERR-----------------------NRLKVYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHhccch-HHHH-----------------------HHHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 87655322110 1111 1122345666777889999998887776444
No 349
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=90.60 E-value=1.3 Score=45.99 Aligned_cols=76 Identities=13% Similarity=0.121 Sum_probs=65.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCchH-HHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHhhh
Q 002375 849 YRAAVLMDDQKEVEAVEELSKAIAFKPDLQM-LHLRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNRARDQA 924 (929)
Q Consensus 849 ~la~~~~~~g~~~eA~~~l~kal~~~p~~~~-~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~l~~~~ 924 (929)
++=..+...++++.|....++.+.++|.++. +.-+|.+|.++|.+.-|+++++..++..|+.+.+.....++.+..
T Consensus 186 ~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l~~l~ 262 (269)
T COG2912 186 NLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQLLELR 262 (269)
T ss_pred HHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHHHHHHH
Confidence 4445778889999999999999999998874 447899999999999999999999999999999888888877665
No 350
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=90.32 E-value=34 Score=38.09 Aligned_cols=280 Identities=15% Similarity=0.090 Sum_probs=134.9
Q ss_pred HHhhcchHHHHHHHHHHHhhHHHHhcccHHHHHHHHHHHHhcCccccHHHHHHHHHHhch-HHHHHHHHHhhh-----cC
Q 002375 407 RLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGHIYSLAGLARAKYKVGQ-QYSAYKLINSII-----SE 480 (929)
Q Consensus 407 ~l~~~~~~~~~~a~~~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~~~a~la~~~~~~g~-a~~a~~~~~~l~-----~~ 480 (929)
++.+...+++..-..||+|-..+-.+|.+++-.+.|++...--|....+. ..+..|+ +...+.....++ ..
T Consensus 30 rLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw---~ly~s~ELA~~df~svE~lf~rCL~k~ 106 (660)
T COG5107 30 RLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAW---RLYMSGELARKDFRSVESLFGRCLKKS 106 (660)
T ss_pred HHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHH---HHHhcchhhhhhHHHHHHHHHHHHhhh
Confidence 34444445556667899999999999999999999999888777766642 2222222 222222111111 11
Q ss_pred CCcchhhhHH----HH-Hhhhhh------HHHHHHHHHHhcCCCChHHHHHHHHHHH---------HhCCHHHHHHHHHH
Q 002375 481 HKPTGWMYQE----RS-LYNLGR------EKIVDLNYASELDPTLSFPYKYRAVAKM---------EEGQIRAAISEIDR 540 (929)
Q Consensus 481 ~~~~~~~~~~----~~-l~~~~~------~Ai~~~~~al~l~P~~~~a~~~~a~~~~---------~~g~~~~A~~~~~~ 540 (929)
...+.|+..- +. -...|+ +|.+..-..+-.+|.....|-..+..+. ++.+.+.-...|.+
T Consensus 107 l~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~r 186 (660)
T COG5107 107 LNLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMR 186 (660)
T ss_pred ccHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHH
Confidence 2233443211 10 011111 2222222233357777777766655442 34455566677778
Q ss_pred HhcccC-CHhH-HH---------HHHHHH----HHhccHHHHHHHHHHHHhhcCCchhhhccccHHHHHHHHHHhhcc--
Q 002375 541 IIVFKL-SVDC-LE---------LRAWLF----IAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRS-- 603 (929)
Q Consensus 541 al~~~~-~~~~-~~---------~~a~~~----~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~a~~ll~~~~~~~~~-- 603 (929)
++.... +.+- |. +.+... -..--|..|...|++...+-..-... .-.. -..+....+
T Consensus 187 al~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~----~~~~--~Rt~nK~~r~s 260 (660)
T COG5107 187 ALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVK----NPIN--LRTANKAARTS 260 (660)
T ss_pred HHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhcccccc----Cchh--hhhhccccccc
Confidence 874432 1111 10 011110 01123445555555554432111100 0000 000000000
Q ss_pred cchHHHHHHhhhccccccc--cc------c-HHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchH
Q 002375 604 WSPADCWIKLYDRWSSVDD--IG------S-LAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEH 674 (929)
Q Consensus 604 ~~~A~~~l~l~~~~~~~d~--~~------a-l~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~ 674 (929)
+..-..|+ .|...+. ++ . --.+++++..-|-.+..|+.........++-+.|+...+++....|.
T Consensus 261 ~S~WlNwI----kwE~en~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps-- 334 (660)
T COG5107 261 DSNWLNWI----KWEMENGLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS-- 334 (660)
T ss_pred cchhhhHh----hHhhcCCcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc--
Confidence 00001122 1111110 00 1 22456666667777777777777777777777777777777666665
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002375 675 ERLVYEGWILYDTGHREEALSRAEKSIS 702 (929)
Q Consensus 675 ~~~~~lg~~~~~~g~~~eA~~~~~~al~ 702 (929)
..+.++..|...++-++-..+|+++++
T Consensus 335 -L~~~lse~yel~nd~e~v~~~fdk~~q 361 (660)
T COG5107 335 -LTMFLSEYYELVNDEEAVYGCFDKCTQ 361 (660)
T ss_pred -hheeHHHHHhhcccHHHHhhhHHHHHH
Confidence 555566666666666655666666554
No 351
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=90.01 E-value=0.64 Score=46.44 Aligned_cols=57 Identities=18% Similarity=0.123 Sum_probs=39.5
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCch
Q 002375 822 EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQ 878 (929)
Q Consensus 822 ~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~ 878 (929)
+.++.+.|.+.|.+++.+.|.+...|+.+|....+.|+.+.|...|++.++++|.+.
T Consensus 7 ~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 7 ESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred ccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 446666677777777777777777777777777777777777777777777776653
No 352
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=89.72 E-value=1 Score=45.09 Aligned_cols=59 Identities=14% Similarity=0.030 Sum_probs=54.4
Q ss_pred HHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch
Q 002375 649 LLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF 707 (929)
Q Consensus 649 ~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~l~p~~ 707 (929)
.....++.+.|.+.|.+++.+.|+....|+.+|....+.|+++.|.+.|++.++++|.+
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 34566889999999999999999999999999999999999999999999999999988
No 353
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=89.64 E-value=2.7 Score=38.58 Aligned_cols=68 Identities=21% Similarity=0.169 Sum_probs=55.7
Q ss_pred hHHHHHHHHHHHHhCC---HHHHHHHHHHHhc-ccC--CHhHHHHHHHHHHHhccHHHHHHHHHHHHhhcCCch
Q 002375 515 SFPYKYRAVAKMEEGQ---IRAAISEIDRIIV-FKL--SVDCLELRAWLFIAADDYESALRDTLALLALESNYM 582 (929)
Q Consensus 515 ~~a~~~~a~~~~~~g~---~~~A~~~~~~al~-~~~--~~~~~~~~a~~~~~~g~~~eA~~~~~~al~~~p~~~ 582 (929)
....+++|.++....+ ..+.+..++..+. -.| .-++.+.++..++++++|++++++.+..++..|++.
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~ 105 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNR 105 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcH
Confidence 4566777888876654 5678888999886 333 556788899999999999999999999999999999
No 354
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=89.45 E-value=34 Score=36.77 Aligned_cols=265 Identities=15% Similarity=0.077 Sum_probs=149.0
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhc--CCch--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---ccchHHH
Q 002375 644 FRQSLLLLRLNCQKAAMRCLRLARNH--SSSE--------HERLVYEGWILYDTGHREEALSRAEKSISI---ERTFEAF 710 (929)
Q Consensus 644 ~~lg~~~~~~g~~~~A~~~l~~al~~--~p~~--------~~~~~~lg~~~~~~g~~~eA~~~~~~al~l---~p~~~a~ 710 (929)
+..+......++.++++..|...+.. .|.. ......+|.+|.+.|+.++-....+..-.. -+...+-
T Consensus 8 ~e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~Kakaa 87 (411)
T KOG1463|consen 8 LERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVSKAKAA 87 (411)
T ss_pred HHHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhhHHHH
Confidence 34455555666778888888888773 1211 235677899999999987765555433221 1111000
Q ss_pred HHHHHHHH-hcCCCCCChHHHHHHHHHHhhchhccCc---hhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC----CC---
Q 002375 711 FLKAYILA-DTNLDPESSTYVIQLLEEALRCPSDGLR---KGQALNNLGSIYVECGKLDQAENCYINALDI----KH--- 779 (929)
Q Consensus 711 ~~l~~~l~-~~~~~~~~~~~a~~~~~~Al~~~~~~l~---~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~----~~--- 779 (929)
. +...+. .....+......+....+.++...+--+ ....-..+...|...++|.+|+......+.. ++
T Consensus 88 K-lvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekRtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~l 166 (411)
T KOG1463|consen 88 K-LVRSLVDMFLKIDDGTGDQIELCTECIEWAKREKRTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKLDDKIL 166 (411)
T ss_pred H-HHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccc
Confidence 0 111111 1111223333444444444443322211 1234456888999999999999887766543 22
Q ss_pred -hHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcc-----CCHHH-H-HHHh----hcCCHHHHHHHHHHHHhcCC---CCc
Q 002375 780 -TRAHQGLARVYYLKNELKAAYDEMTKLLEKAQ-----YSASA-F-EKRS----EYSDREMAKNDLNMATQLDP---LRT 844 (929)
Q Consensus 780 -~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~-~-~~lg----~~~~~~~A~~~~~~al~l~p---~~~ 844 (929)
.+++..-..+|+...+..+|...+..+-.... ....+ . ..-| .-.+|.-|..+|-+|++-.. +..
T Consensus 167 Lvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v 246 (411)
T KOG1463|consen 167 LVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDV 246 (411)
T ss_pred eeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHHhccceeecccccchHHHHHHHHHccccccCCcH
Confidence 24666677888899999988888877764321 11111 1 1112 23788899999998887433 122
Q ss_pred HH---HHHHHHHHHhcCCHHHHHHH--HHHHHhcCCCch-HHHHHHHHHHH--cCCHHHHHHHHHHHhccCCC
Q 002375 845 YP---YRYRAAVLMDDQKEVEAVEE--LSKAIAFKPDLQ-MLHLRAAFYES--IGDLTSAIRDSQAALCLDPN 909 (929)
Q Consensus 845 ~~---~~~la~~~~~~g~~~eA~~~--l~kal~~~p~~~-~~~~la~~~~~--~g~~~~A~~~~~~al~l~P~ 909 (929)
.+ +.++-.+-...+..++--.. -+.+++...... .....|..+.. +.+++.|+..|+.=+.-||=
T Consensus 247 ~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~~D~i 319 (411)
T KOG1463|consen 247 KALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMKAVAEAFGNRSLKDFEKALADYKKELAEDPI 319 (411)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHHHHHHHhcCCcHHHHHHHHHHhHHHHhcChH
Confidence 32 33333333445555543333 344455433332 33344666554 57899999999998888873
No 355
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=89.40 E-value=34 Score=39.69 Aligned_cols=48 Identities=17% Similarity=0.059 Sum_probs=26.0
Q ss_pred HHHHhCCHHHHHHHHHHHhcccCCHhHHHHHHHHHHHhccHHHHHHHHHHHH
Q 002375 524 AKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALL 575 (929)
Q Consensus 524 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~al 575 (929)
.+.+.|.+++|...---. .....|..++.-.+..=+++-|.+.|.++-
T Consensus 565 q~Ieag~f~ea~~iaclg----Vv~~DW~~LA~~ALeAL~f~~ARkAY~rVR 612 (1081)
T KOG1538|consen 565 QYIERGLFKEAYQIACLG----VTDTDWRELAMEALEALDFETARKAYIRVR 612 (1081)
T ss_pred hhhhccchhhhhcccccc----eecchHHHHHHHHHhhhhhHHHHHHHHHHh
Confidence 456777777664321111 123345555555555566677777666653
No 356
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=89.31 E-value=0.5 Score=50.19 Aligned_cols=85 Identities=13% Similarity=0.051 Sum_probs=62.2
Q ss_pred EEEEE-cCeEEEehhHHHhccCHHHHHHhcCCCCcCCCCeeEecCCCCCHHHHHHHhhhhccCCCCCCCHhHHHHHHHHh
Q 002375 220 VTFCV-RDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFCPGIVLELLSFA 298 (929)
Q Consensus 220 v~~~v-~~~~~~~hr~iLaa~S~~F~~m~~~~~~e~~~~~i~~~~~~~~~~~~~~~l~~~yt~~~~~~~~~~~~~ll~~A 298 (929)
++|.+ +|+.|-|||..|++||.+|..-+..-+. ...+|+= ..+-+.+|..++.|+|-+.-. +-++.--+|++..
T Consensus 152 i~f~~q~g~~f~ahkfll~arSs~~~~k~v~~~~--~~heI~~--~~v~~~~f~~flk~lyl~~na-~~~~qynallsi~ 226 (516)
T KOG0511|consen 152 IDFLQQEGANFDAHKFLLEARSSNYFPKDVMFYV--QGHEIEA--HRVILSAFSPFLKQLYLNTNA-EWKDQYNALLSIE 226 (516)
T ss_pred hHHHhhccccccHHHHHHHhhhcccCchhhhhcc--ccCchhh--hhhhHhhhhHHHHHHHHhhhh-hhhhHHHHHHhhh
Confidence 77777 6888999999999999988654433221 1234544 567899999999999976332 4444557899999
Q ss_pred chhChHhHHHH
Q 002375 299 NRFCCEEMKSA 309 (929)
Q Consensus 299 ~~~~~~~l~~~ 309 (929)
.+|+++.|...
T Consensus 227 ~kF~~e~l~~~ 237 (516)
T KOG0511|consen 227 VKFSKEKLSLE 237 (516)
T ss_pred hhccHHHhHHH
Confidence 99998877643
No 357
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=89.16 E-value=45 Score=37.82 Aligned_cols=89 Identities=12% Similarity=-0.016 Sum_probs=53.7
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHh------hcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhc
Q 002375 784 QGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS------EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDD 857 (929)
Q Consensus 784 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg------~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~ 857 (929)
..+-..+.+.|-+.+|...|.+.....|-+...+...- ..++...+..+|+.++.-...+++.|...-..-...
T Consensus 464 s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~~lw~~y~~~e~~~ 543 (568)
T KOG2396|consen 464 SKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADSDLWMDYMKEELPL 543 (568)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCChHHHHHHHHhhccC
Confidence 34455566777788888888888877776666554433 234455566666666655555666665554444455
Q ss_pred CCHHHHHHHHHHHHh
Q 002375 858 QKEVEAVEELSKAIA 872 (929)
Q Consensus 858 g~~~eA~~~l~kal~ 872 (929)
|..+.+-..|.+|++
T Consensus 544 g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 544 GRPENCGQIYWRAMK 558 (568)
T ss_pred CCcccccHHHHHHHH
Confidence 555555555555543
No 358
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=88.96 E-value=13 Score=37.13 Aligned_cols=81 Identities=11% Similarity=0.062 Sum_probs=56.9
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc----hHHH-HHHHHHH
Q 002375 815 SAFEKRSEYSDREMAKNDLNMATQLDP-LRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDL----QMLH-LRAAFYE 888 (929)
Q Consensus 815 ~~~~~lg~~~~~~~A~~~~~~al~l~p-~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~----~~~~-~la~~~~ 888 (929)
..|+.....|+ ++|...|-++-.... +.++..+.+|..|. ..+.++|+..+.+++++.+.+ +.++ .++.++.
T Consensus 112 llYy~Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~ 189 (203)
T PF11207_consen 112 LLYYHWSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQ 189 (203)
T ss_pred HHHHHhhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Confidence 34555545555 456655555433222 67888888996555 678999999999999986544 3444 7899999
Q ss_pred HcCCHHHHH
Q 002375 889 SIGDLTSAI 897 (929)
Q Consensus 889 ~~g~~~~A~ 897 (929)
++|+++.|-
T Consensus 190 ~~~~~e~AY 198 (203)
T PF11207_consen 190 KLKNYEQAY 198 (203)
T ss_pred Hhcchhhhh
Confidence 999999875
No 359
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.90 E-value=18 Score=41.38 Aligned_cols=148 Identities=15% Similarity=0.120 Sum_probs=97.3
Q ss_pred CCHHHHHHHHHHHHcC--------------CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-----c------------
Q 002375 762 GKLDQAENCYINALDI--------------KHTRAHQGLARVYYLKNELKAAYDEMTKLLEK-----A------------ 810 (929)
Q Consensus 762 g~~~eA~~~~~~al~~--------------~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~-----~------------ 810 (929)
..|++|...|.-++.. -|.+.+..++.+...+|+.+.|.+...+++-. .
T Consensus 252 ~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL 331 (665)
T KOG2422|consen 252 NSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRL 331 (665)
T ss_pred hHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccC
Confidence 3455666666666554 12357777777777888877777766666521 1
Q ss_pred ----cCCHHHHH-------HHhhcCCHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHH-hcCCHHHHHHHHHHH-----Hh
Q 002375 811 ----QYSASAFE-------KRSEYSDREMAKNDLNMATQLDPL-RTYPYRYRAAVLM-DDQKEVEAVEELSKA-----IA 872 (929)
Q Consensus 811 ----p~~~~~~~-------~lg~~~~~~~A~~~~~~al~l~p~-~~~~~~~la~~~~-~~g~~~eA~~~l~ka-----l~ 872 (929)
|.|-..|. .++..|-+..|.++.+..++++|. ++.+...+...|. +..+|+=-|+.++.. +.
T Consensus 332 ~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~ 411 (665)
T KOG2422|consen 332 PYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLS 411 (665)
T ss_pred cccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHh
Confidence 22222221 122558889999999999999997 8888777777664 445666555555544 23
Q ss_pred cCCCchHHHHHHHHHHHcCC---HHHHHHHHHHHhccCCC
Q 002375 873 FKPDLQMLHLRAAFYESIGD---LTSAIRDSQAALCLDPN 909 (929)
Q Consensus 873 ~~p~~~~~~~la~~~~~~g~---~~~A~~~~~~al~l~P~ 909 (929)
.-|+...-..+|.+|..... ...|...+.+|++..|.
T Consensus 412 ~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P~ 451 (665)
T KOG2422|consen 412 QLPNFGYSLALARFFLRKNEEDDRQSALNALLQALKHHPL 451 (665)
T ss_pred hcCCchHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCcH
Confidence 34555544567888887665 67899999999999983
No 360
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=88.75 E-value=16 Score=40.20 Aligned_cols=99 Identities=11% Similarity=0.032 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcC--CHHHHHHHHHHHHhcCCCc-hHHHHHHHHHHH----cCCHHHHHH
Q 002375 826 REMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQ--KEVEAVEELSKAIAFKPDL-QMLHLRAAFYES----IGDLTSAIR 898 (929)
Q Consensus 826 ~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g--~~~eA~~~l~kal~~~p~~-~~~~~la~~~~~----~g~~~~A~~ 898 (929)
.++-+.....+++.+|+...+|+.+.+++.+.+ ++..=+...+++++.+|.+ ..|+.+-.+... .....+=++
T Consensus 91 ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ 170 (421)
T KOG0529|consen 91 LDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELE 170 (421)
T ss_pred hHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHH
Confidence 356677788889999999999999999998777 4788889999999999876 455544333222 233566778
Q ss_pred HHHHHhccCCCCHHHHHHHHHHHhhh
Q 002375 899 DSQAALCLDPNHMETLDLYNRARDQA 924 (929)
Q Consensus 899 ~~~~al~l~P~~~~a~~~~~~l~~~~ 924 (929)
+..+++.-++.|-.+|..+..+-...
T Consensus 171 ftt~~I~~nfSNYsaWhyRs~lL~~l 196 (421)
T KOG0529|consen 171 FTTKLINDNFSNYSAWHYRSLLLSTL 196 (421)
T ss_pred HHHHHHhccchhhhHHHHHHHHHHHh
Confidence 88899999999999999888776543
No 361
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=88.64 E-value=7.1 Score=44.77 Aligned_cols=119 Identities=17% Similarity=0.103 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHccCCHHHHHHH--h----hcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHH-HH
Q 002375 799 AYDEMTKLLEKAQYSASAFEKR--S----EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSK-AI 871 (929)
Q Consensus 799 A~~~~~~al~~~p~~~~~~~~l--g----~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~k-al 871 (929)
++..+..-+..++.++...... . ..++...+...+..++..+|.+..+..++|..+...|....+...+.. +.
T Consensus 50 ~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~ 129 (620)
T COG3914 50 AIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAE 129 (620)
T ss_pred HHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3444444444555555542222 2 346666777777888888888888888888888777766666655555 67
Q ss_pred hcCCCchHHH-------HHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHH
Q 002375 872 AFKPDLQMLH-------LRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLY 917 (929)
Q Consensus 872 ~~~p~~~~~~-------~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~ 917 (929)
...|++.... .++.....+|+..++....+++..+.|.++++....
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~ 182 (620)
T COG3914 130 WLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGAL 182 (620)
T ss_pred hcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHH
Confidence 7777764322 237777778888888888888888888886654433
No 362
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.30 E-value=26 Score=33.96 Aligned_cols=63 Identities=13% Similarity=0.075 Sum_probs=46.6
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCCch--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccc
Q 002375 644 FRQSLLLLRLNCQKAAMRCLRLARNHSSSE--HERLVYEGWILYDTGHREEALSRAEKSISIERT 706 (929)
Q Consensus 644 ~~lg~~~~~~g~~~~A~~~l~~al~~~p~~--~~~~~~lg~~~~~~g~~~eA~~~~~~al~l~p~ 706 (929)
+..+.-+...|+.++|+..|...-+..-.. .-+.+..|.+..+.|+-.+|+..|..+-.-.|-
T Consensus 62 flaAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~ 126 (221)
T COG4649 62 FLAALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSI 126 (221)
T ss_pred HHHHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCC
Confidence 334445566788899999998876655443 335567789999999999999999988765543
No 363
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=88.17 E-value=4 Score=40.31 Aligned_cols=96 Identities=14% Similarity=-0.024 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHhcccCCHh----HHHHHHHHHHHhccHHHHHHHHHHHHhhcCCchhhhccccHH
Q 002375 516 FPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVD----CLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGD 591 (929)
Q Consensus 516 ~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~----~~~~~a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~a~ 591 (929)
.++..+|..|.+.|+.+.|++.|.++.+...++. .+.....+.+..+++..+...+.++-..-.....|..+.+..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 5788999999999999999999999886655443 366677777889999999999988876644433333333455
Q ss_pred HHHHHHHHhhcccchHHHHH
Q 002375 592 HLVKLLNHHVRSWSPADCWI 611 (929)
Q Consensus 592 ~ll~~~~~~~~~~~~A~~~l 611 (929)
...|+.....++|..|-..+
T Consensus 117 ~~~gL~~l~~r~f~~AA~~f 136 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELF 136 (177)
T ss_pred HHHHHHHHHhchHHHHHHHH
Confidence 56777777788888885554
No 364
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=87.96 E-value=1 Score=31.90 Aligned_cols=30 Identities=27% Similarity=0.227 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 002375 675 ERLVYEGWILYDTGHREEALSRAEKSISIE 704 (929)
Q Consensus 675 ~~~~~lg~~~~~~g~~~eA~~~~~~al~l~ 704 (929)
.++.++|.+|...|++++|+.++++++.+.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 467889999999999999999999998764
No 365
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=87.93 E-value=23 Score=40.99 Aligned_cols=99 Identities=18% Similarity=0.158 Sum_probs=55.1
Q ss_pred ChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHHHHH
Q 002375 639 KSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILA 718 (929)
Q Consensus 639 ~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~l~p~~~a~~~l~~~l~ 718 (929)
.-+.+...+..+.++..+.-|-+.|.+.-. .-.+..++...+++++|....++--+..| ..++..+..++
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD--------~ksiVqlHve~~~W~eAFalAe~hPe~~~--dVy~pyaqwLA 815 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLKMGD--------LKSLVQLHVETQRWDEAFALAEKHPEFKD--DVYMPYAQWLA 815 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHHhcc--------HHHHhhheeecccchHhHhhhhhCccccc--cccchHHHHhh
Confidence 334444455555555555555555554311 12344566777888888877665433333 44566666666
Q ss_pred hcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002375 719 DTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINAL 775 (929)
Q Consensus 719 ~~~~~~~~~~~a~~~~~~Al~~~~~~l~~~~a~~~lg~~~~~~g~~~eA~~~~~~al 775 (929)
+.. ++++|-+ +|.+.|+-.+|...+++.-
T Consensus 816 E~D-----------rFeEAqk-----------------AfhkAGr~~EA~~vLeQLt 844 (1081)
T KOG1538|consen 816 END-----------RFEEAQK-----------------AFHKAGRQREAVQVLEQLT 844 (1081)
T ss_pred hhh-----------hHHHHHH-----------------HHHHhcchHHHHHHHHHhh
Confidence 665 6666654 3445556666666555543
No 366
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=87.73 E-value=22 Score=35.49 Aligned_cols=40 Identities=18% Similarity=0.210 Sum_probs=19.9
Q ss_pred hCCHHHHHHHHHHHhcccC-----CHhHHHHHHHHHHHhccHHHH
Q 002375 528 EGQIRAAISEIDRIIVFKL-----SVDCLELRAWLFIAADDYESA 567 (929)
Q Consensus 528 ~g~~~~A~~~~~~al~~~~-----~~~~~~~~a~~~~~~g~~~eA 567 (929)
..|.++|+..+.+++++.. +|+.+..++.++..+|+++.|
T Consensus 153 krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 153 KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 4445555555555554332 444555555555555555544
No 367
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=87.02 E-value=2 Score=48.14 Aligned_cols=87 Identities=16% Similarity=0.072 Sum_probs=65.5
Q ss_pred HhCCHHHHHHHHHHHHHHccCCHHHHHHHh-------hcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHH
Q 002375 792 LKNELKAAYDEMTKLLEKAQYSASAFEKRS-------EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAV 864 (929)
Q Consensus 792 ~~g~~~~A~~~~~~al~~~p~~~~~~~~lg-------~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~ 864 (929)
..+....|+..|.+++...|.....+.+++ -.|+.-.|+.....|++++|....+++.|+.++...+++.+|+
T Consensus 386 y~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal 465 (758)
T KOG1310|consen 386 YESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEAL 465 (758)
T ss_pred hhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhh
Confidence 334456778888888888887776666655 3467778888888888888888888888888888888888888
Q ss_pred HHHHHHHhcCCCch
Q 002375 865 EELSKAIAFKPDLQ 878 (929)
Q Consensus 865 ~~l~kal~~~p~~~ 878 (929)
+....+....|.+.
T Consensus 466 ~~~~alq~~~Ptd~ 479 (758)
T KOG1310|consen 466 SCHWALQMSFPTDV 479 (758)
T ss_pred hhHHHHhhcCchhh
Confidence 88777766666553
No 368
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=86.81 E-value=3.2 Score=36.16 Aligned_cols=59 Identities=24% Similarity=0.149 Sum_probs=47.3
Q ss_pred HHHHhcCHHHHHHHHHHHHhcCCc---------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch
Q 002375 649 LLLRLNCQKAAMRCLRLARNHSSS---------EHERLVYEGWILYDTGHREEALSRAEKSISIERTF 707 (929)
Q Consensus 649 ~~~~~g~~~~A~~~l~~al~~~p~---------~~~~~~~lg~~~~~~g~~~eA~~~~~~al~l~p~~ 707 (929)
...+.|+|.+|++.+.+.++.... ...+...+|.++...|++++|+..+++++++....
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~ 74 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAREN 74 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 346789999998888888754322 24567889999999999999999999999986655
No 369
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=86.64 E-value=1.7 Score=45.34 Aligned_cols=89 Identities=15% Similarity=-0.010 Sum_probs=66.8
Q ss_pred HHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHH--HHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 002375 833 LNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLHL--RAAFYESIGDLTSAIRDSQAALCLDPNH 910 (929)
Q Consensus 833 ~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~--la~~~~~~g~~~~A~~~~~~al~l~P~~ 910 (929)
|.++....|.++..|...+....+.|-|.+--..|.+++..+|.+..++. -+.-+...++.+.+...|.+++.++|++
T Consensus 96 ~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~ 175 (435)
T COG5191 96 LYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRS 175 (435)
T ss_pred eehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCC
Confidence 44555666777888877776667777788888888888888888876552 3555566788888888888888888888
Q ss_pred HHHHHHHHHHH
Q 002375 911 METLDLYNRAR 921 (929)
Q Consensus 911 ~~a~~~~~~l~ 921 (929)
|..|..+=|++
T Consensus 176 p~iw~eyfr~E 186 (435)
T COG5191 176 PRIWIEYFRME 186 (435)
T ss_pred chHHHHHHHHH
Confidence 88887776654
No 370
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=86.23 E-value=4 Score=38.35 Aligned_cols=72 Identities=18% Similarity=0.062 Sum_probs=57.3
Q ss_pred cCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHH-HHHHHHHHcCCHH
Q 002375 823 YSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLH-LRAAFYESIGDLT 894 (929)
Q Consensus 823 ~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~-~la~~~~~~g~~~ 894 (929)
.++.+++...+...--+.|+.+..-..-|.+++..|+|.+|+..|+...+-.+..+... +++.|+..+||.+
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp~ 95 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDAE 95 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCChH
Confidence 45666777777777777888888888899999999999999999999888777766555 5588888888754
No 371
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=86.18 E-value=14 Score=39.47 Aligned_cols=95 Identities=22% Similarity=0.235 Sum_probs=66.0
Q ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc---hHHH-HHHHHHHHcCCHHHHHHHHHHHh
Q 002375 829 AKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDL---QMLH-LRAAFYESIGDLTSAIRDSQAAL 904 (929)
Q Consensus 829 A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~---~~~~-~la~~~~~~g~~~~A~~~~~~al 904 (929)
-...|.-...+.| ++.+-.|.+.+..+..-.+.++...+.... .|.. ..++ .+|..+.++|+.++|...|++++
T Consensus 315 I~aLYdaL~~~ap-SPvV~LNRAVAla~~~Gp~agLa~ve~L~~-~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi 392 (415)
T COG4941 315 IDALYDALEQAAP-SPVVTLNRAVALAMREGPAAGLAMVEALLA-RPRLDGYHLYHAARADLLARLGRVEEARAAYDRAI 392 (415)
T ss_pred HHHHHHHHHHhCC-CCeEeehHHHHHHHhhhHHhHHHHHHHhhc-ccccccccccHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 3334444444555 445555666666655556667766665443 3333 2333 67999999999999999999999
Q ss_pred ccCCCCHHHHHHHHHHHhhhh
Q 002375 905 CLDPNHMETLDLYNRARDQAS 925 (929)
Q Consensus 905 ~l~P~~~~a~~~~~~l~~~~~ 925 (929)
.+.++..+...++.++.....
T Consensus 393 ~La~~~aer~~l~~r~~~l~~ 413 (415)
T COG4941 393 ALARNAAERAFLRQRLDRLAS 413 (415)
T ss_pred HhcCChHHHHHHHHHHHHhhc
Confidence 999999999999888876654
No 372
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=85.96 E-value=52 Score=35.07 Aligned_cols=67 Identities=9% Similarity=-0.150 Sum_probs=45.2
Q ss_pred CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 002375 636 DPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIE 704 (929)
Q Consensus 636 ~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~l~ 704 (929)
+.+....-+.+-....+..+..+-++....+++++|..+.++..++.-- .--..+|...++++++..
T Consensus 180 d~D~~r~e~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEE--a~Ti~~AE~l~k~ALka~ 246 (556)
T KOG3807|consen 180 DTDFLRPEDEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEEE--ATTIVDAERLFKQALKAG 246 (556)
T ss_pred cccccChHHHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhh--hhhHHHHHHHHHHHHHHH
Confidence 3344444455555666677778888888888888888888887776532 223567777888777643
No 373
>KOG2715 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=85.08 E-value=6.5 Score=37.15 Aligned_cols=100 Identities=9% Similarity=-0.070 Sum_probs=72.0
Q ss_pred CCCC-EEEEEcCeEEEehhHHHhccCHHHHHHhcCCCCcCC----CCeeEecCCCCCHHHHHHHhhhhccCCCCCCCHhH
Q 002375 216 EDDS-VTFCVRDKEISFVRNKIASLSSPFKAMLYGGFVESK----RKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFCPGI 290 (929)
Q Consensus 216 ~~~~-v~~~v~~~~~~~hr~iLaa~S~~F~~m~~~~~~e~~----~~~i~~~~~~~~~~~~~~~l~~~yt~~~~~~~~~~ 290 (929)
+.+. |.|-|||..|---|.-|.--+.-|-.-|-.+-.+.. ..---+ -|-+|.-|-.+|+|+..|++- ++.-.
T Consensus 18 g~s~wVRlNVGGt~f~TtktTl~rdp~sFl~rl~q~~~~l~sdrDetGAYl--IDRDP~~FgpvLNylRhgklv-l~~l~ 94 (210)
T KOG2715|consen 18 GVSLWVRLNVGGTVFLTTKTTLPRDPKSFLYRLCQREKDLPSDRDETGAYL--IDRDPFYFGPVLNYLRHGKLV-LNKLS 94 (210)
T ss_pred CceEEEEEecCCEEEEeeeeccccCcHHHHHHHHhcccCCCCCccccCceE--eccCcchHHHHHHHHhcchhh-hhhhh
Confidence 3344 999999999999999998888666665543322211 112223 355899999999999999998 66523
Q ss_pred HHHHHHHhchhChHhHHHHHHHHHHhhc
Q 002375 291 VLELLSFANRFCCEEMKSACDAHLASLV 318 (929)
Q Consensus 291 ~~~ll~~A~~~~~~~l~~~C~~~l~~~~ 318 (929)
=..+|.-|++|.++.|...-.+.+.+..
T Consensus 95 eeGvL~EAefyn~~~li~likd~i~dRd 122 (210)
T KOG2715|consen 95 EEGVLEEAEFYNDPSLIQLIKDRIQDRD 122 (210)
T ss_pred hhccchhhhccCChHHHHHHHHHHHHHh
Confidence 3457888999999999887777776544
No 374
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=84.90 E-value=1.2 Score=31.36 Aligned_cols=29 Identities=24% Similarity=0.335 Sum_probs=26.7
Q ss_pred HHHHHhhHHHHhcccHHHHHHHHHHHHhc
Q 002375 420 LALHQLGCVMFEREEYKDACYYFEAAADA 448 (929)
Q Consensus 420 ~~~~~lG~~~~~~g~y~~A~~~f~~al~~ 448 (929)
.+|..||.+-+..++|++|+.-|++++++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 46788999999999999999999999986
No 375
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=84.53 E-value=37 Score=38.86 Aligned_cols=128 Identities=19% Similarity=0.152 Sum_probs=71.0
Q ss_pred HHHhcCHHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHHHHHhcCCCCCChH
Q 002375 650 LLRLNCQKAAMRCLRLARNHSSSE-HERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESST 728 (929)
Q Consensus 650 ~~~~g~~~~A~~~l~~al~~~p~~-~~~~~~lg~~~~~~g~~~eA~~~~~~al~l~p~~~a~~~l~~~l~~~~~~~~~~~ 728 (929)
....++++++.+..+.. ++-|.- ..-...++..+.+.|.++.|+..-+ +|+ ..+.++.. .|
T Consensus 271 av~~~d~~~v~~~i~~~-~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~-----D~~--~rFeLAl~---lg------- 332 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAAS-NLLPNIPKDQGQSIARFLEKKGYPELALQFVT-----DPD--HRFELALQ---LG------- 332 (443)
T ss_dssp HHHTT-HHH-----HHH-HTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS------HH--HHHHHHHH---CT-------
T ss_pred HHHcCChhhhhhhhhhh-hhcccCChhHHHHHHHHHHHCCCHHHHHhhcC-----ChH--HHhHHHHh---cC-------
Confidence 34567888877776522 222322 3345667788888998888876532 232 23333322 22
Q ss_pred HHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 002375 729 YVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIKHTRAHQGLARVYYLKNELKAAYDEMTKL 806 (929)
Q Consensus 729 ~a~~~~~~Al~~~~~~l~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~~~a~~~la~~~~~~g~~~~A~~~~~~a 806 (929)
+++.|.+..+..- ....|..||.....+|+++-|..+|+++-. +..|..+|...|+.+.-.+..+.+
T Consensus 333 ----~L~~A~~~a~~~~-~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d------~~~L~lLy~~~g~~~~L~kl~~~a 399 (443)
T PF04053_consen 333 ----NLDIALEIAKELD-DPEKWKQLGDEALRQGNIELAEECYQKAKD------FSGLLLLYSSTGDREKLSKLAKIA 399 (443)
T ss_dssp -----HHHHHHHCCCCS-THHHHHHHHHHHHHTTBHHHHHHHHHHCT-------HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred ----CHHHHHHHHHhcC-cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC------ccccHHHHHHhCCHHHHHHHHHHH
Confidence 5556655443332 345799999999999999999999988643 455666777777765444444443
No 376
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=83.83 E-value=68 Score=34.59 Aligned_cols=165 Identities=13% Similarity=0.031 Sum_probs=91.5
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHh----cCCc--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHHHH
Q 002375 644 FRQSLLLLRLNCQKAAMRCLRLARN----HSSS--EHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYIL 717 (929)
Q Consensus 644 ~~lg~~~~~~g~~~~A~~~l~~al~----~~p~--~~~~~~~lg~~~~~~g~~~eA~~~~~~al~l~p~~~a~~~l~~~l 717 (929)
..+..+|...++|.+|+......+. ++.. -.+++..-..+|+...+..+|...+..|-.....- +
T Consensus 132 arli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~Anai-------Y-- 202 (411)
T KOG1463|consen 132 ARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAI-------Y-- 202 (411)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhccc-------c--
Confidence 4566778888888888877665543 2222 24566666777777777777777666554321100 0
Q ss_pred HhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC-----CChH---HHHHHHHH
Q 002375 718 ADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI-----KHTR---AHQGLARV 789 (929)
Q Consensus 718 ~~~~~~~~~~~~a~~~~~~Al~~~~~~l~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~-----~~~~---a~~~la~~ 789 (929)
-|. +.. +..-..-|..+....+|.-|..+|-.|.+- .+.. ++..+-.+
T Consensus 203 -----cpP-------qlQ------------a~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLc 258 (411)
T KOG1463|consen 203 -----CPP-------QLQ------------ATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLC 258 (411)
T ss_pred -----cCH-------HHH------------HHHHHhccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHH
Confidence 000 000 122233455666667888888888777765 2222 33344445
Q ss_pred HHHhCCHHHHHHHH--HHHHHHccCCHHHHHHHh------hcCCHHHHHHHHHHHHhcCC
Q 002375 790 YYLKNELKAAYDEM--TKLLEKAQYSASAFEKRS------EYSDREMAKNDLNMATQLDP 841 (929)
Q Consensus 790 ~~~~g~~~~A~~~~--~~al~~~p~~~~~~~~lg------~~~~~~~A~~~~~~al~l~p 841 (929)
-...+..++-...+ +.+++.......+....+ .+.+|+.|+..|..-+..||
T Consensus 259 KIMln~~ddv~~lls~K~~l~y~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~~D~ 318 (411)
T KOG1463|consen 259 KIMLNLPDDVAALLSAKLALKYAGRDIDAMKAVAEAFGNRSLKDFEKALADYKKELAEDP 318 (411)
T ss_pred HHHhcCHHHHHHHHhhHHHHhccCcchHHHHHHHHHhcCCcHHHHHHHHHHhHHHHhcCh
Confidence 55566666544433 333343344444444333 34567777777777777666
No 377
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=82.75 E-value=6.1 Score=43.79 Aligned_cols=159 Identities=16% Similarity=0.097 Sum_probs=111.3
Q ss_pred HHHhCCHHHHHHHHHHHhcccC-CHhHHHHHHHHHHHhccHHHHHHHHHHHHhhcCCchhhhccccHHHHHHHHHHhhcc
Q 002375 525 KMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRS 603 (929)
Q Consensus 525 ~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~a~~ll~~~~~~~~~ 603 (929)
....|+...|-.....++...| .|+....++.++..+|+|+.|...+..+-..-.... .+...+-.-....++
T Consensus 299 ~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~------~~~~~~~r~~~~l~r 372 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTD------STLRCRLRSLHGLAR 372 (831)
T ss_pred HhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCc------hHHHHHHHhhhchhh
Confidence 3467888888888888887777 888999999999999999999887765544332222 444455555667788
Q ss_pred cchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHH--H
Q 002375 604 WSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYE--G 681 (929)
Q Consensus 604 ~~~A~~~l~l~~~~~~~d~~~al~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~l--g 681 (929)
|+.|.... .-++...-+++++....+.....+|-+++|...+++.+.++|....-|.+. .
T Consensus 373 ~~~a~s~a------------------~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~~~~~ 434 (831)
T PRK15180 373 WREALSTA------------------EMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVNFLSS 434 (831)
T ss_pred HHHHHHHH------------------HHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccceeeecc
Confidence 88885544 666777777777777777777888999999999999999988764444332 3
Q ss_pred HHHHHcCC-HHHHHHHHHHHHhhccch
Q 002375 682 WILYDTGH-REEALSRAEKSISIERTF 707 (929)
Q Consensus 682 ~~~~~~g~-~~eA~~~~~~al~l~p~~ 707 (929)
.-|+..|+ +.+|...--+.-.++..+
T Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (831)
T PRK15180 435 TQYFNDGNAFSEAFHAGIQSQRLNDTF 461 (831)
T ss_pred ceeccCcchHHHHHHhhhhhhhhhHHH
Confidence 34555554 566655544444444444
No 378
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=81.27 E-value=5.6 Score=41.49 Aligned_cols=49 Identities=16% Similarity=0.270 Sum_probs=35.9
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHH
Q 002375 630 NQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLV 678 (929)
Q Consensus 630 ~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~ 678 (929)
++.+..+|.++.-+...|.+|.++|.+..|+..++..++..|+.+.+-.
T Consensus 205 ~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ 253 (269)
T COG2912 205 ERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEM 253 (269)
T ss_pred HHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHH
Confidence 7777777777777777777777777777777777777777777665543
No 379
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=80.95 E-value=21 Score=40.90 Aligned_cols=100 Identities=13% Similarity=-0.011 Sum_probs=60.7
Q ss_pred HHHcCCHHHHHHHHHHH--HcCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHh-hcCCHHHHHHHHH
Q 002375 758 YVECGKLDQAENCYINA--LDIKHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS-EYSDREMAKNDLN 834 (929)
Q Consensus 758 ~~~~g~~~eA~~~~~~a--l~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg-~~~~~~~A~~~~~ 834 (929)
....|+++++....... +..-+.+-...++.-+.++|.++.|+..- .++...+.++ +.|+.+.|.+..+
T Consensus 271 av~~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~--------~D~~~rFeLAl~lg~L~~A~~~a~ 342 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQFV--------TDPDHRFELALQLGNLDIALEIAK 342 (443)
T ss_dssp HHHTT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHS--------S-HHHHHHHHHHCT-HHHHHHHCC
T ss_pred HHHcCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhc--------CChHHHhHHHHhcCCHHHHHHHHH
Confidence 34567788876666422 22234555667777778888888777642 3445556666 6777777766543
Q ss_pred HHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 002375 835 MATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKA 870 (929)
Q Consensus 835 ~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~ka 870 (929)
+ .+++..|..||...+.+|+++-|.++|+++
T Consensus 343 ~-----~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~ 373 (443)
T PF04053_consen 343 E-----LDDPEKWKQLGDEALRQGNIELAEECYQKA 373 (443)
T ss_dssp C-----CSTHHHHHHHHHHHHHTTBHHHHHHHHHHC
T ss_pred h-----cCcHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 2 346778888888888888888888888875
No 380
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=80.84 E-value=78 Score=33.22 Aligned_cols=264 Identities=13% Similarity=0.023 Sum_probs=142.6
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCCc--------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch--HHHHHH
Q 002375 644 FRQSLLLLRLNCQKAAMRCLRLARNHSSS--------EHERLVYEGWILYDTGHREEALSRAEKSISIERTF--EAFFLK 713 (929)
Q Consensus 644 ~~lg~~~~~~g~~~~A~~~l~~al~~~p~--------~~~~~~~lg~~~~~~g~~~eA~~~~~~al~l~p~~--~a~~~l 713 (929)
..++.-....+++++|+..|.+.+..... .......++.+|...|++..-.+.....-+.-.++ .-....
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Ki 86 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKI 86 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHH
Confidence 44566666778999999999999876321 23456788999999999765544433322221111 001111
Q ss_pred HHHH-HhcCCCCCChHHHHHHHHHHhhchhccCc---hhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC----C----ChH
Q 002375 714 AYIL-ADTNLDPESSTYVIQLLEEALRCPSDGLR---KGQALNNLGSIYVECGKLDQAENCYINALDI----K----HTR 781 (929)
Q Consensus 714 ~~~l-~~~~~~~~~~~~a~~~~~~Al~~~~~~l~---~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~----~----~~~ 781 (929)
...+ ......+.+.+..+......++...+--+ ....-..+..++...|+|.+|+....-.+.. + -..
T Consensus 87 irtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~ 166 (421)
T COG5159 87 IRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLIT 166 (421)
T ss_pred HHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceee
Confidence 1222 22233444455544444444443332211 1244556788899999999999887666543 2 225
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHc-----cCCHHHHHHH--h----hcCCHHHHHHHHHHHHhcCC---CCcHHH
Q 002375 782 AHQGLARVYYLKNELKAAYDEMTKLLEKA-----QYSASAFEKR--S----EYSDREMAKNDLNMATQLDP---LRTYPY 847 (929)
Q Consensus 782 a~~~la~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~l--g----~~~~~~~A~~~~~~al~l~p---~~~~~~ 847 (929)
.+..-..+|....+..++...+..+-... |....+-..+ | .-.++.-|..+|-++++-.. .+..+.
T Consensus 167 vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft~l~~d~kAc 246 (421)
T COG5159 167 VHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGFTLLKMDVKAC 246 (421)
T ss_pred hhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhccccccchHHHH
Confidence 67777888888888888877776665432 2111111111 1 33577888888888876433 223332
Q ss_pred H-----HHHHHHHhcCCHHHHHHHHH--HHHhcCCC-chHH-HHHHHHHHH--cCCHHHHHHHHHHHhccCCC
Q 002375 848 R-----YRAAVLMDDQKEVEAVEELS--KAIAFKPD-LQML-HLRAAFYES--IGDLTSAIRDSQAALCLDPN 909 (929)
Q Consensus 848 ~-----~la~~~~~~g~~~eA~~~l~--kal~~~p~-~~~~-~~la~~~~~--~g~~~~A~~~~~~al~l~P~ 909 (929)
. .+..+. .+..++--..++ ..++...+ .... ...+..+.. +.++..|+..|+.-+.-||-
T Consensus 247 ~sLkYmlLSkIM--lN~~~evk~vl~~K~t~~~y~~r~I~am~avaea~~NRsL~df~~aL~qY~~el~~D~~ 317 (421)
T COG5159 247 VSLKYMLLSKIM--LNRREEVKAVLRNKNTLKHYDDRMIRAMLAVAEAFGNRSLKDFSDALAQYSDELHQDSF 317 (421)
T ss_pred HHHHHHHHHHHH--HhhHHHHHHHHccchhHhhhhhhhHHHHHHHHHHhCCCcHhhHHHHHHHhhHHhccCHH
Confidence 2 222222 222232222221 12221111 1111 122444432 46788899988888777664
No 381
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=80.69 E-value=4.2 Score=45.63 Aligned_cols=90 Identities=12% Similarity=-0.058 Sum_probs=63.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHcC--CChHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHccCCHHHHHHHh----hcC
Q 002375 754 LGSIYVECGKLDQAENCYINALDI--KHTRAHQGLARVYYLK---NELKAAYDEMTKLLEKAQYSASAFEKRS----EYS 824 (929)
Q Consensus 754 lg~~~~~~g~~~eA~~~~~~al~~--~~~~a~~~la~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~lg----~~~ 824 (929)
-|.-.+..+....|+..|.++++. .....+.+.+.++.+. |+.-.|+.....+++.+|....+++.++ +++
T Consensus 380 egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~ 459 (758)
T KOG1310|consen 380 EGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELT 459 (758)
T ss_pred hccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHh
Confidence 344445556777888888888877 3345666677776664 4455677777788888888887777776 667
Q ss_pred CHHHHHHHHHHHHhcCCCC
Q 002375 825 DREMAKNDLNMATQLDPLR 843 (929)
Q Consensus 825 ~~~~A~~~~~~al~l~p~~ 843 (929)
++.+|+.+...+....|.+
T Consensus 460 r~~eal~~~~alq~~~Ptd 478 (758)
T KOG1310|consen 460 RYLEALSCHWALQMSFPTD 478 (758)
T ss_pred hHHHhhhhHHHHhhcCchh
Confidence 8888888887777777743
No 382
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=80.44 E-value=2.3 Score=26.94 Aligned_cols=23 Identities=17% Similarity=0.069 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHH
Q 002375 676 RLVYEGWILYDTGHREEALSRAE 698 (929)
Q Consensus 676 ~~~~lg~~~~~~g~~~eA~~~~~ 698 (929)
+...+|.++...|++++|...++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45556666666666666666554
No 383
>PRK11619 lytic murein transglycosylase; Provisional
Probab=80.09 E-value=1.5e+02 Score=35.96 Aligned_cols=134 Identities=11% Similarity=-0.023 Sum_probs=79.7
Q ss_pred HcCCHHHHHHHHHHHHcC--CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHh--hcCCHHH---H-HH
Q 002375 760 ECGKLDQAENCYINALDI--KHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS--EYSDREM---A-KN 831 (929)
Q Consensus 760 ~~g~~~eA~~~~~~al~~--~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg--~~~~~~~---A-~~ 831 (929)
..++++.+...+...-.. ......+.+|+++...|+.++|...|+++.. +.+ .|-.++ .+|..-. . ..
T Consensus 324 ~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~--~~~--fYG~LAa~~Lg~~~~~~~~~~~ 399 (644)
T PRK11619 324 GTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ--QRG--FYPMVAAQRLGEEYPLKIDKAP 399 (644)
T ss_pred HccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc--CCC--cHHHHHHHHcCCCCCCCCCCCC
Confidence 556666665555553222 3456777788887778888888888888743 222 232222 2221100 0 00
Q ss_pred HHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002375 832 DLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLHLRAAFYESIGDLTSAIRDSQAA 903 (929)
Q Consensus 832 ~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~a 903 (929)
.-...+. .......+..+...|+..+|...+..++.. .+......++.+....|.++.|+....++
T Consensus 400 ~~~~~~~-----~~~~~~ra~~L~~~g~~~~a~~ew~~~~~~-~~~~~~~~la~~A~~~g~~~~ai~~~~~~ 465 (644)
T PRK11619 400 KPDSALT-----QGPEMARVRELMYWNMDNTARSEWANLVAS-RSKTEQAQLARYAFNQQWWDLSVQATIAG 465 (644)
T ss_pred chhhhhc-----cChHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCHHHHHHHHhhc
Confidence 0000111 123456677888889999999999888775 44555566777777888888887766554
No 384
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=79.95 E-value=3.1 Score=29.23 Aligned_cols=29 Identities=17% Similarity=0.343 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 002375 845 YPYRYRAAVLMDDQKEVEAVEELSKAIAF 873 (929)
Q Consensus 845 ~~~~~la~~~~~~g~~~eA~~~l~kal~~ 873 (929)
+++..||.+-+..++|++|++.|++++++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 34566666666677777777777766654
No 385
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=79.59 E-value=7.9 Score=33.64 Aligned_cols=59 Identities=20% Similarity=0.183 Sum_probs=43.2
Q ss_pred HHHHhCCHHHHHHHHHHHhcccC----C------HhHHHHHHHHHHHhccHHHHHHHHHHHHhhcCCch
Q 002375 524 AKMEEGQIRAAISEIDRIIVFKL----S------VDCLELRAWLFIAADDYESALRDTLALLALESNYM 582 (929)
Q Consensus 524 ~~~~~g~~~~A~~~~~~al~~~~----~------~~~~~~~a~~~~~~g~~~eA~~~~~~al~~~p~~~ 582 (929)
...+.|||.+|++.+.+..+... . ......+|.++...|++++|+..+++++++.....
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~ 75 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENG 75 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHC
Confidence 34577888888888777765543 1 12356678888889999999999999988765444
No 386
>PRK11619 lytic murein transglycosylase; Provisional
Probab=79.42 E-value=1.5e+02 Score=35.79 Aligned_cols=126 Identities=7% Similarity=-0.078 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHhcccCCHhHHHHHHHHHHHhccHHHHHHHHHHHHhhcCCchhhhccccHHHHHHH
Q 002375 517 PYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKL 596 (929)
Q Consensus 517 a~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~a~~ll~~ 596 (929)
..+..|.-..+.|++..+.....++- -.| ...|.....+....+. .....+...++.+|+.+ ....+...
T Consensus 35 ~~f~~A~~a~~~g~~~~~~~~~~~l~-d~p-L~~yl~y~~L~~~l~~--~~~~ev~~Fl~~~~~~P------~~~~Lr~~ 104 (644)
T PRK11619 35 QRYQQIKQAWDNRQMDVVEQLMPTLK-DYP-LYPYLEYRQLTQDLMN--QPAVQVTNFIRANPTLP------PARSLQSR 104 (644)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhcc-CCC-cHhHHHHHHHHhcccc--CCHHHHHHHHHHCCCCc------hHHHHHHH
Confidence 44556677788888888766666542 121 1112211222222221 12235666677788877 22222222
Q ss_pred HHHhh---cccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCch
Q 002375 597 LNHHV---RSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE 673 (929)
Q Consensus 597 ~~~~~---~~~~~A~~~l~l~~~~~~~d~~~al~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~ 673 (929)
..... ++|..- .+.....|.+.......+......|+.++|....+++.......
T Consensus 105 ~l~~La~~~~w~~~----------------------~~~~~~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~~ 162 (644)
T PRK11619 105 FVNELARREDWRGL----------------------LAFSPEKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKSL 162 (644)
T ss_pred HHHHHHHccCHHHH----------------------HHhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Confidence 22222 222221 12222347777777888888888898888887777776554433
Q ss_pred H
Q 002375 674 H 674 (929)
Q Consensus 674 ~ 674 (929)
+
T Consensus 163 p 163 (644)
T PRK11619 163 P 163 (644)
T ss_pred C
Confidence 3
No 387
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=79.34 E-value=22 Score=37.71 Aligned_cols=30 Identities=23% Similarity=0.060 Sum_probs=21.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCc
Q 002375 848 RYRAAVLMDDQKEVEAVEELSKAIAFKPDL 877 (929)
Q Consensus 848 ~~la~~~~~~g~~~eA~~~l~kal~~~p~~ 877 (929)
..+|.+..++|+..+|++.++...+..|-.
T Consensus 279 RRLAMCARklGrlrEA~K~~RDL~ke~pl~ 308 (556)
T KOG3807|consen 279 RRLAMCARKLGRLREAVKIMRDLMKEFPLL 308 (556)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhhhccHH
Confidence 456777777777777777777777666633
No 388
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=78.36 E-value=2e+02 Score=36.38 Aligned_cols=108 Identities=9% Similarity=0.081 Sum_probs=54.8
Q ss_pred HhhHHHHhcccHHHHHHHHHHHHhcCccccHHHHHHHHHHhchHHHHHHHHHhhhcCCCcchhhhHHHHHhhhhhHHHHH
Q 002375 424 QLGCVMFEREEYKDACYYFEAAADAGHIYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNLGREKIVD 503 (929)
Q Consensus 424 ~lG~~~~~~g~y~~A~~~f~~al~~~~~~~~a~la~~~~~~g~a~~a~~~~~~l~~~~~~~~~~~~~~~l~~~~~~Ai~~ 503 (929)
....+++..+.|+.|+..|++....-|.-.... .+.++.|-+ .++++...- ++ ....+|+..
T Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~~~~~~---~~-----------~~~~~~~~~ 541 (932)
T PRK13184 480 AVPDAFLAEKLYDQALIFYRRIRESFPGRKEGY--EAQFRLGIT--LLEKASEQG---DP-----------RDFTQALSE 541 (932)
T ss_pred cCcHHHHhhHHHHHHHHHHHHHhhcCCCcccch--HHHHHhhHH--HHHHHHhcC---Ch-----------HHHHHHHHH
Confidence 355677888899999999998877665543310 111222211 111111000 00 011244444
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccC-CHhH
Q 002375 504 LNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDC 550 (929)
Q Consensus 504 ~~~al~l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~ 550 (929)
|++. .-.|.-|.-|...|.+|.+.|+|++-++.+.-+++..+ .|..
T Consensus 542 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 588 (932)
T PRK13184 542 FSYL-HGGVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEI 588 (932)
T ss_pred HHHh-cCCCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCcc
Confidence 4432 22344555566666666666666666666666665554 4443
No 389
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=78.33 E-value=14 Score=30.72 Aligned_cols=55 Identities=13% Similarity=0.038 Sum_probs=40.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCchHHH----HHHHHHHHcCCHHHHHHHHHHHhc
Q 002375 851 AAVLMDDQKEVEAVEELSKAIAFKPDLQMLH----LRAAFYESIGDLTSAIRDSQAALC 905 (929)
Q Consensus 851 a~~~~~~g~~~eA~~~l~kal~~~p~~~~~~----~la~~~~~~g~~~~A~~~~~~al~ 905 (929)
|.-++..++.++|+..++++++..++.+..+ .+..+|...|++.+++++--+=++
T Consensus 13 GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~ 71 (80)
T PF10579_consen 13 GLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLE 71 (80)
T ss_pred HHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445577888899999999998888776444 457778888888888776554443
No 390
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=78.29 E-value=14 Score=30.72 Aligned_cols=61 Identities=20% Similarity=0.176 Sum_probs=47.9
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHH---HHHHHHcCCHHHHHHHHHHHHhh
Q 002375 643 RFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYE---GWILYDTGHREEALSRAEKSISI 703 (929)
Q Consensus 643 ~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~l---g~~~~~~g~~~eA~~~~~~al~l 703 (929)
....|.-++..++.++|+..++++++..++.+..+..+ ..+|...|+|.+++++.-+-+.+
T Consensus 9 ~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 9 QIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667788999999999999999988876655554 56788899999999887665544
No 391
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.31 E-value=1.6e+02 Score=34.69 Aligned_cols=99 Identities=10% Similarity=-0.063 Sum_probs=55.4
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHH
Q 002375 783 HQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVE 862 (929)
Q Consensus 783 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~e 862 (929)
+.+-|.-+++..+|..+++.|...+...|.+..-. ..+.....++.+|....+.+.
T Consensus 357 LWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~------------------------~FaK~qR~l~~CYL~L~QLD~ 412 (872)
T KOG4814|consen 357 LWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSD------------------------RFAKIQRALQVCYLKLEQLDN 412 (872)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhh------------------------HHHHHHHHHHHHHhhHHHHHH
Confidence 44556666777778888887777776665542210 123344455556666666666
Q ss_pred HHHHHHHHHhcCCCchHHH-HHHHHHHHcCCHHHHHHHHHHHhc
Q 002375 863 AVEELSKAIAFKPDLQMLH-LRAAFYESIGDLTSAIRDSQAALC 905 (929)
Q Consensus 863 A~~~l~kal~~~p~~~~~~-~la~~~~~~g~~~~A~~~~~~al~ 905 (929)
|.++++.|-+.+|.++.-. ..-.+....|+-++|+....+...
T Consensus 413 A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s 456 (872)
T KOG4814|consen 413 AVEVYQEAEEVDRQSPLCQLLMLQSFLAEDKSEEALTCLQKIKS 456 (872)
T ss_pred HHHHHHHHHhhccccHHHHHHHHHHHHHhcchHHHHHHHHHHHh
Confidence 6666666666666554322 223344445555556555554443
No 392
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=77.29 E-value=3.6 Score=26.05 Aligned_cols=23 Identities=22% Similarity=0.043 Sum_probs=13.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHH
Q 002375 846 PYRYRAAVLMDDQKEVEAVEELS 868 (929)
Q Consensus 846 ~~~~la~~~~~~g~~~eA~~~l~ 868 (929)
+...+|.++...|++++|...++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 44555666666666666655543
No 393
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=77.10 E-value=2.7 Score=45.07 Aligned_cols=84 Identities=18% Similarity=0.091 Sum_probs=65.9
Q ss_pred CcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCch-HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 002375 843 RTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQ-MLHLRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNRAR 921 (929)
Q Consensus 843 ~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~-~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~l~ 921 (929)
....+.+++.+-++.+.+..|+..-..++..+++.. .+|.++..+....++++|+++++.+....|++......+..++
T Consensus 274 r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~ 353 (372)
T KOG0546|consen 274 RFSIRRNLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVR 353 (372)
T ss_pred ccccccchHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhh
Confidence 344455678888888888888888877777666664 4556699999999999999999999999999998887777766
Q ss_pred hhhhh
Q 002375 922 DQASH 926 (929)
Q Consensus 922 ~~~~~ 926 (929)
.+..+
T Consensus 354 ~~~~~ 358 (372)
T KOG0546|consen 354 QKKKQ 358 (372)
T ss_pred hHHHH
Confidence 55543
No 394
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=77.00 E-value=21 Score=37.76 Aligned_cols=64 Identities=8% Similarity=-0.060 Sum_probs=58.8
Q ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 002375 640 SFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISI 703 (929)
Q Consensus 640 ~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~l 703 (929)
..++..++..+...|+++.++..+++.+..+|-+-..|..+-..|+..|+...|+..|++.-+.
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 4567788889999999999999999999999999999999999999999999999999987663
No 395
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=76.99 E-value=4.4 Score=42.53 Aligned_cols=78 Identities=5% Similarity=0.005 Sum_probs=69.2
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHH-HHHHHHHcCCHHHHHHHHHHHHhhccch
Q 002375 630 NQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVY-EGWILYDTGHREEALSRAEKSISIERTF 707 (929)
Q Consensus 630 ~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~-lg~~~~~~g~~~eA~~~~~~al~l~p~~ 707 (929)
.++....|+++..|...+......+.+.+--..|.++++.+|.+.+.|.. -+.-+...++.+.+...|.++++.+|+.
T Consensus 97 ~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~ 175 (435)
T COG5191 97 YRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRS 175 (435)
T ss_pred ehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCC
Confidence 45555678999999999988889999999999999999999999999987 5667788999999999999999999887
No 396
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=75.70 E-value=2e+02 Score=35.03 Aligned_cols=265 Identities=13% Similarity=-0.003 Sum_probs=163.0
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHH---HHcCCHHHHHHHHHHHHh
Q 002375 626 LAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWIL---YDTGHREEALSRAEKSIS 702 (929)
Q Consensus 626 l~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~---~~~g~~~eA~~~~~~al~ 702 (929)
+..++.-+.+++.+...+..+-.++...|++++-...-..+.++.|..+..|.....-. ...+...++...|++++.
T Consensus 99 i~t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~ 178 (881)
T KOG0128|consen 99 IRTLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEELFEKALG 178 (881)
T ss_pred HHHHHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhc
Confidence 55566777788888888888999999999999888888888888888888876654332 234778888999999987
Q ss_pred hccchHHHHHHHHHHHhc---CCCCCChHHHHHHHHHHhhchhccCchh----HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002375 703 IERTFEAFFLKAYILADT---NLDPESSTYVIQLLEEALRCPSDGLRKG----QALNNLGSIYVECGKLDQAENCYINAL 775 (929)
Q Consensus 703 l~p~~~a~~~l~~~l~~~---~~~~~~~~~a~~~~~~Al~~~~~~l~~~----~a~~~lg~~~~~~g~~~eA~~~~~~al 775 (929)
-.-.-..|...+..+... +...+........+++|++...-.+..+ ..+...-..|...-..++-+.++...+
T Consensus 179 dy~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el 258 (881)
T KOG0128|consen 179 DYNSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALFVREL 258 (881)
T ss_pred ccccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 543334444333333222 2333555555666777776555444433 556666677777776777888888777
Q ss_pred cCC--Ch---HHHHHHH--HH-HHHhCCHHHHHHHHHHHHHHc-------cCCHHHHHHHh----hcCCHHHHHHHHHHH
Q 002375 776 DIK--HT---RAHQGLA--RV-YYLKNELKAAYDEMTKLLEKA-------QYSASAFEKRS----EYSDREMAKNDLNMA 836 (929)
Q Consensus 776 ~~~--~~---~a~~~la--~~-~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~lg----~~~~~~~A~~~~~~a 836 (929)
... .. ..|.... .. .....+++.|...+.+.+... |.-...|...- ..|+...-...++++
T Consensus 259 ~~~~D~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~ 338 (881)
T KOG0128|consen 259 KQPLDEDTRGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQKEPIKDQEWMSYIDFEKKSGDPVRIQLIEERA 338 (881)
T ss_pred hccchhhhhHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 762 11 1111111 11 122344555555444433222 22112222222 346666777788888
Q ss_pred HhcCCCCcHHHHHHHHHH-HhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHc
Q 002375 837 TQLDPLRTYPYRYRAAVL-MDDQKEVEAVEELSKAIAFKPDLQMLHLRAAFYESI 890 (929)
Q Consensus 837 l~l~p~~~~~~~~la~~~-~~~g~~~eA~~~l~kal~~~p~~~~~~~la~~~~~~ 890 (929)
+.-.+.+...|...|... ...+-.+.+...+.+++...|-...++.++.+-...
T Consensus 339 ~~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~cp~tgdL~~rallAleR 393 (881)
T KOG0128|consen 339 VAEMVLDRALWIGYGVYLDTELKVPQRGVSVHPRAVRSCPWTGDLWKRALLALER 393 (881)
T ss_pred HHhccccHHHHhhhhhhcccccccccccccccchhhcCCchHHHHHHHHHHHHHh
Confidence 888887888888777433 234445566677777888777777777555544433
No 397
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=75.35 E-value=42 Score=42.53 Aligned_cols=164 Identities=15% Similarity=0.047 Sum_probs=102.8
Q ss_pred HHHHHHHHHHHHhcCHHHHHH------HHH-HHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--------c
Q 002375 641 FLRFRQSLLLLRLNCQKAAMR------CLR-LARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIE--------R 705 (929)
Q Consensus 641 ~~~~~lg~~~~~~g~~~~A~~------~l~-~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~l~--------p 705 (929)
.-....|......|.+.+|.+ .+. ..-.+.|.....+..++.++...|++++|+..-.++.-+. |
T Consensus 933 ~~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~ 1012 (1236)
T KOG1839|consen 933 KDSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSP 1012 (1236)
T ss_pred hhhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCH
Confidence 344566666777777777777 444 2234578888999999999999999999999887776443 2
Q ss_pred ch-HHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhcc---Cch--hHHHHHHHHHHHHcCCHHHHHHHHHHHHcCC-
Q 002375 706 TF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDG---LRK--GQALNNLGSIYVECGKLDQAENCYINALDIK- 778 (929)
Q Consensus 706 ~~-~a~~~l~~~l~~~~~~~~~~~~a~~~~~~Al~~~~~~---l~~--~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~- 778 (929)
+. ..+.+++....... ....++..+..|.....-. ..| .....+++.++...++++.|+.+.+.|.+..
T Consensus 1013 ~t~~~y~nlal~~f~~~----~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~ 1088 (1236)
T KOG1839|consen 1013 NTKLAYGNLALYEFAVK----NLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNK 1088 (1236)
T ss_pred HHHHHhhHHHHHHHhcc----CccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHh
Confidence 22 34444443333332 2222222333333222111 122 3566888999999999999999999998871
Q ss_pred ---------ChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 002375 779 ---------HTRAHQGLARVYYLKNELKAAYDEMTKLLE 808 (929)
Q Consensus 779 ---------~~~a~~~la~~~~~~g~~~~A~~~~~~al~ 808 (929)
....+..+++++...+++..|....+....
T Consensus 1089 ~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~ 1127 (1236)
T KOG1839|consen 1089 KVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYG 1127 (1236)
T ss_pred hhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHH
Confidence 123555566666666666666555544443
No 398
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=75.04 E-value=5.9 Score=25.96 Aligned_cols=31 Identities=26% Similarity=0.217 Sum_probs=25.4
Q ss_pred CCHHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 002375 891 GDLTSAIRDSQAALCLDPNHMETLDLYNRAR 921 (929)
Q Consensus 891 g~~~~A~~~~~~al~l~P~~~~a~~~~~~l~ 921 (929)
|+.+.|...|++++...|.+++.|..+....
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~e 31 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEFE 31 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 5678888889999988888888888877654
No 399
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=74.84 E-value=1e+02 Score=34.08 Aligned_cols=33 Identities=6% Similarity=-0.100 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCch
Q 002375 641 FLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE 673 (929)
Q Consensus 641 ~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~ 673 (929)
...+.+|.+..-+++|..|.+++-+|+...|++
T Consensus 248 RY~yY~GrIkaiqldYssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 248 RYLYYLGRIKAIQLDYSSALEYFLQALRKAPQH 280 (493)
T ss_pred HHHHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence 345566666666677777777777777666653
No 400
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=74.74 E-value=1.6e+02 Score=33.63 Aligned_cols=163 Identities=15% Similarity=0.010 Sum_probs=89.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHcC-CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHh---hcCCH
Q 002375 751 LNNLGSIYVECGKLDQAENCYINALDI-KHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS---EYSDR 826 (929)
Q Consensus 751 ~~~lg~~~~~~g~~~eA~~~~~~al~~-~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg---~~~~~ 826 (929)
+..+-.++....++.-....+.+++.. .+.-+++.++.+|... ..++-...+++.++.+-++...-..++ +.++.
T Consensus 69 l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEkik~ 147 (711)
T COG1747 69 LVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEKIKK 147 (711)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHHhch
Confidence 444445555555666666677777777 4556888888888777 556666777777777666655544444 44666
Q ss_pred HHHHHHHHHHHhcC-C-----CCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCch--HHH-HHHHHHHHcCCHHHHH
Q 002375 827 EMAKNDLNMATQLD-P-----LRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQ--MLH-LRAAFYESIGDLTSAI 897 (929)
Q Consensus 827 ~~A~~~~~~al~l~-p-----~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~--~~~-~la~~~~~~g~~~~A~ 897 (929)
.++...|.+++... | .-.+.|..+-.. --.+.+.-+....+.-......- .++ ..-.-|....++.+|+
T Consensus 148 sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai 225 (711)
T COG1747 148 SKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAI 225 (711)
T ss_pred hhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHH
Confidence 77777777766421 1 011112111110 01122222222222211111111 111 1223455578999999
Q ss_pred HHHHHHhccCCCCHHHHHH
Q 002375 898 RDSQAALCLDPNHMETLDL 916 (929)
Q Consensus 898 ~~~~~al~l~P~~~~a~~~ 916 (929)
+.....++.|..+.-|...
T Consensus 226 ~Ilk~il~~d~k~~~ar~~ 244 (711)
T COG1747 226 RILKHILEHDEKDVWARKE 244 (711)
T ss_pred HHHHHHhhhcchhhhHHHH
Confidence 9999999998877665543
No 401
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.73 E-value=1.7e+02 Score=33.80 Aligned_cols=74 Identities=9% Similarity=0.020 Sum_probs=58.1
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCch----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc
Q 002375 630 NQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE----HERLVYEGWILYDTGHREEALSRAEKSISIER 705 (929)
Q Consensus 630 ~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~----~~~~~~lg~~~~~~g~~~eA~~~~~~al~l~p 705 (929)
.......|+++...+..+..+...|+.+.|+..++..+. +.. .-.++.+|+++.-+.+|..|...+......+.
T Consensus 257 l~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~desd 334 (546)
T KOG3783|consen 257 KKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLLRDESD 334 (546)
T ss_pred HHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhh
Confidence 455566899999889999999999998888888888877 332 23456778999999999999999888776544
No 402
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=74.13 E-value=8.6 Score=26.68 Aligned_cols=31 Identities=19% Similarity=0.266 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHH--HHHHHhhcc
Q 002375 675 ERLVYEGWILYDTGHREEALSR--AEKSISIER 705 (929)
Q Consensus 675 ~~~~~lg~~~~~~g~~~eA~~~--~~~al~l~p 705 (929)
+.+..+|..+...|++++|+.. |+-+..+++
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~ 34 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDK 34 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence 3455666666666666666666 334444443
No 403
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=73.32 E-value=1.8e+02 Score=33.38 Aligned_cols=130 Identities=26% Similarity=0.286 Sum_probs=74.7
Q ss_pred hHhHHHHHHHHHHhhcCChhhHHHHHHHHH-hhChHHHHHHHHHHHhhhhhhhcCcchhhhhhccchhHHHHHhhCCChh
Q 002375 303 CEEMKSACDAHLASLVGDIEDALILIDYGL-EERATLLVASCLQVLLRELPSSLYNPKVMKIFCSSEATERLANVGHASF 381 (929)
Q Consensus 303 ~~~l~~~C~~~l~~~~~~~~n~~~~~~~a~-~~~~~~L~~~c~~~i~~~~~~~~~~~~f~~L~~~~~~~~~~~~~~~~~~ 381 (929)
++.|+..|.++|+..-+ +.+.++--+. .++-.-|-+.|+--+..-|.+=.++.-+.+ +| .|+...|..-.
T Consensus 30 ~~~~~~ic~~hl~~~k~---si~~lyisg~~~~s~~~l~d~~l~~~~~~f~~n~k~~~veh-~c-----~~~l~~~e~km 100 (711)
T COG1747 30 LDVLKGICDEHLAHSKN---SIIALYISGIISLSKQLLDDSCLVTLLTIFGDNHKNQIVEH-LC-----TRVLEYGESKM 100 (711)
T ss_pred HHHHHHHHHHHHHHhhh---hhHHHHHHHHHHhhhccccchHHHHHHHHhccchHHHHHHH-HH-----HHHHHhcchHH
Confidence 46789999999987433 3344443332 344556777787766665554444443333 33 24445555444
Q ss_pred HHHHHhhhhhhhhcccchHHHHHHHHHhhcchHHHHHHHHHHHhhHHHHhcccHHHHHHHHHHHHhc
Q 002375 382 LLYYFLSQVAMEKDRVSNTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADA 448 (929)
Q Consensus 382 ~~~~~l~~~~~~~~~~~~~~~~~Le~l~~~~~~~~~~a~~~~~lG~~~~~~g~y~~A~~~f~~al~~ 448 (929)
.++ -+.+..++. .++.-..+-+++++..-++.-... +|+.. ++.++-..|..+|.+|+..
T Consensus 101 al~-el~q~y~en--~n~~l~~lWer~ve~dfnDvv~~R---eLa~~-yEkik~sk~a~~f~Ka~yr 160 (711)
T COG1747 101 ALL-ELLQCYKEN--GNEQLYSLWERLVEYDFNDVVIGR---ELADK-YEKIKKSKAAEFFGKALYR 160 (711)
T ss_pred HHH-HHHHHHHhc--CchhhHHHHHHHHHhcchhHHHHH---HHHHH-HHHhchhhHHHHHHHHHHH
Confidence 433 345555554 344444555666665544433222 34444 4558889999999998875
No 404
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=72.96 E-value=68 Score=37.19 Aligned_cols=126 Identities=13% Similarity=-0.132 Sum_probs=76.0
Q ss_pred HHHHHHHHhcccC-CHhHHHH--HHHHHHHhccHHHHHHHHHHHHhhcCCchhhhccccHHHHHHHHHHhhcccchH-HH
Q 002375 534 AISEIDRIIVFKL-SVDCLEL--RAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPA-DC 609 (929)
Q Consensus 534 A~~~~~~al~~~~-~~~~~~~--~a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A-~~ 609 (929)
++..+...+.+++ +++.+.. +...+...++...+.-.....+..+|++. .+...++......+....+ ..
T Consensus 50 ~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~------~~~~~L~~ale~~~~~~~~~~~ 123 (620)
T COG3914 50 AIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENC------PAVQNLAAALELDGLQFLALAD 123 (620)
T ss_pred HHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccc------hHHHHHHHHHHHhhhHHHHHHH
Confidence 5555555554454 4444222 24444556777777777777777777777 5555665555444433332 12
Q ss_pred HHHhhhccccccccccHHHHHHHHhcCCCChHHHHHH------HHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHH
Q 002375 610 WIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQ------SLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWI 683 (929)
Q Consensus 610 ~l~l~~~~~~~d~~~al~~~~~al~~~p~~~~~~~~l------g~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~ 683 (929)
+. +-+....|++......+ +.....+|+..++...++++....|.++.+...+...
T Consensus 124 ~~------------------~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~ 185 (620)
T COG3914 124 IS------------------EIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTA 185 (620)
T ss_pred HH------------------HHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence 22 34666677777665555 6666677777777777777777777776665555554
No 405
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=72.50 E-value=38 Score=42.92 Aligned_cols=168 Identities=15% Similarity=0.075 Sum_probs=102.6
Q ss_pred HHHHHHHHHHhCCHHHHHH------HHHHHh-cccC-CHhHHHHHHHHHHHhccHHHHHHHHHHHHhhcCCch--hhhcc
Q 002375 518 YKYRAVAKMEEGQIRAAIS------EIDRII-VFKL-SVDCLELRAWLFIAADDYESALRDTLALLALESNYM--MFHGR 587 (929)
Q Consensus 518 ~~~~a~~~~~~g~~~~A~~------~~~~al-~~~~-~~~~~~~~a~~~~~~g~~~eA~~~~~~al~~~p~~~--~~~~~ 587 (929)
....|......|.+.+|.+ .+++.. .+.+ .+.++..++.++..++++++|+..-.++.-+..... .....
T Consensus 935 ~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t 1014 (1236)
T KOG1839|consen 935 SPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNT 1014 (1236)
T ss_pred hhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHH
Confidence 4555666677778887777 444222 1222 556788999999999999999988777654321111 01111
Q ss_pred ccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhc--------CCCChHHHHHHHHHHHHhcCHHHH
Q 002375 588 VSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLIN--------DPGKSFLRFRQSLLLLRLNCQKAA 659 (929)
Q Consensus 588 ~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~d~~~al~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A 659 (929)
...+..++......++...|...+ .++... .|.-+....+++.++...++++.|
T Consensus 1015 ~~~y~nlal~~f~~~~~~~al~~~------------------~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~a 1076 (1236)
T KOG1839|consen 1015 KLAYGNLALYEFAVKNLSGALKSL------------------NRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTA 1076 (1236)
T ss_pred HHHhhHHHHHHHhccCccchhhhH------------------HHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHH
Confidence 133444555555554444443322 444332 455666677889999999999999
Q ss_pred HHHHHHHHhcCCc--------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 002375 660 MRCLRLARNHSSS--------EHERLVYEGWILYDTGHREEALSRAEKSISI 703 (929)
Q Consensus 660 ~~~l~~al~~~p~--------~~~~~~~lg~~~~~~g~~~eA~~~~~~al~l 703 (929)
+++.+.|...+.. ....+..++.++...+++..|+...+....+
T Consensus 1077 l~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~i 1128 (1236)
T KOG1839|consen 1077 LRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYGI 1128 (1236)
T ss_pred HHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHH
Confidence 9999999875422 2334555566666666666666555554443
No 406
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.19 E-value=1.1e+02 Score=37.86 Aligned_cols=29 Identities=14% Similarity=-0.010 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 002375 642 LRFRQSLLLLRLNCQKAAMRCLRLARNHS 670 (929)
Q Consensus 642 ~~~~lg~~~~~~g~~~~A~~~l~~al~~~ 670 (929)
-+..++.+|...|+.++|++.+.....-.
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~ 534 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDED 534 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccc
Confidence 36778889999999999999999987733
No 407
>KOG3840 consensus Uncharaterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=71.97 E-value=6.9 Score=40.58 Aligned_cols=82 Identities=17% Similarity=0.195 Sum_probs=55.4
Q ss_pred EEEEEcCeEEEehhHHHhccC-HHHHHHhcCCCC---cCCCCeeEecCCCCCHHHHHHHhhhhccCCCCCCCHhHHHHHH
Q 002375 220 VTFCVRDKEISFVRNKIASLS-SPFKAMLYGGFV---ESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFCPGIVLELL 295 (929)
Q Consensus 220 v~~~v~~~~~~~hr~iLaa~S-~~F~~m~~~~~~---e~~~~~i~~~~~~~~~~~~~~~l~~~yt~~~~~~~~~~~~~ll 295 (929)
|+..|++..|-..+.+|.+.- .-.-.||.+++. -...++.++. +||+..+|+++|+|--||.+.--+.-.|-||-
T Consensus 98 ~t~lvd~~rf~v~q~llt~~p~Tmlg~mf~~g~~f~~pNErgEyeVA-dGi~s~vFRAILdYYksG~iRCP~~vSvpELr 176 (438)
T KOG3840|consen 98 VCLLVDQTRFLVSQRLLTSKPDTMLGRMFSMGADLVSPNERDEFEVA-DGMTSSCFRAILDYYQSGTMRCPSSVSVSELR 176 (438)
T ss_pred eEEEeeeEEEEeeeeeecCCcchhhhhhhcccccccCCCcCCceehh-cchhHHHHHHHHHHHhcCceeCCCCCchHHHH
Confidence 999999999999888886542 223467776643 2234466664 79999999999999999998732222344444
Q ss_pred HHhchhC
Q 002375 296 SFANRFC 302 (929)
Q Consensus 296 ~~A~~~~ 302 (929)
.+.|.++
T Consensus 177 EACDYLl 183 (438)
T KOG3840|consen 177 EACDYLL 183 (438)
T ss_pred hhcceEE
Confidence 4444443
No 408
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=71.16 E-value=12 Score=25.96 Aligned_cols=30 Identities=27% Similarity=0.249 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHhccHHHHHHH--HHHHHhhcC
Q 002375 550 CLELRAWLFIAADDYESALRD--TLALLALES 579 (929)
Q Consensus 550 ~~~~~a~~~~~~g~~~eA~~~--~~~al~~~p 579 (929)
.+...|..+...|++++|+.. |+-+..+++
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~ 34 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDK 34 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence 344455555666666666666 334444444
No 409
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=71.01 E-value=1.1e+02 Score=33.93 Aligned_cols=168 Identities=13% Similarity=0.178 Sum_probs=98.1
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHh------------CCHHHHHHHHHHHhcccC-CHhHHHHHHHHHHHhc--c
Q 002375 499 EKIVDLNYASELDPTLSFPYKYRAVAKMEE------------GQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAAD--D 563 (929)
Q Consensus 499 ~Ai~~~~~al~l~P~~~~a~~~~a~~~~~~------------g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~~g--~ 563 (929)
++++.=.+.++.+|.....|..+-.++... .-.++-+.....++..+| +-.++..+.|+..+.+ +
T Consensus 47 e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~ 126 (421)
T KOG0529|consen 47 EHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSD 126 (421)
T ss_pred HHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCch
Confidence 344444444555555555554443332211 134445555666665565 4445667777776554 3
Q ss_pred HHHHHHHHHHHHhhcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHH
Q 002375 564 YESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLR 643 (929)
Q Consensus 564 ~~eA~~~~~~al~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~d~~~al~~~~~al~~~p~~~~~~ 643 (929)
+..=++..+++++.+|.+- .++.....+........ ....+-+....+++..++.+-.+|
T Consensus 127 ~~~EL~lcek~L~~D~RNf------h~W~YRRfV~~~~~~~~--------------~~~~~El~ftt~~I~~nfSNYsaW 186 (421)
T KOG0529|consen 127 WNTELQLCEKALKQDPRNF------HAWHYRRFVVEQAERSR--------------NLEKEELEFTTKLINDNFSNYSAW 186 (421)
T ss_pred HHHHHHHHHHHHhcCcccc------cchHHHHHHHHHHhccc--------------ccchhHHHHHHHHHhccchhhhHH
Confidence 5677788888888888887 55555555553322210 011122444578888899999999
Q ss_pred HHHHHHHHH------hcC------HHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Q 002375 644 FRQSLLLLR------LNC------QKAAMRCLRLARNHSSSEHERLVYEGWILYD 686 (929)
Q Consensus 644 ~~lg~~~~~------~g~------~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~ 686 (929)
..+..++.. .|+ ...-+.....|+-.+|++..+|++.-+.+-+
T Consensus 187 hyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY~rWLl~~ 241 (421)
T KOG0529|consen 187 HYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFYHRWLLGR 241 (421)
T ss_pred HHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccceeeehHHhhcc
Confidence 988887763 231 2344555666777889888888875555544
No 410
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=70.24 E-value=14 Score=26.94 Aligned_cols=22 Identities=27% Similarity=0.299 Sum_probs=10.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHh
Q 002375 883 RAAFYESIGDLTSAIRDSQAAL 904 (929)
Q Consensus 883 la~~~~~~g~~~~A~~~~~~al 904 (929)
+|..|..+||.+.|.+.++.++
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHH
Confidence 3444555555555555555544
No 411
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=68.96 E-value=1.4e+02 Score=31.47 Aligned_cols=65 Identities=17% Similarity=0.004 Sum_probs=42.6
Q ss_pred CCcHHHHHHHHHHHhcCCHHHHHHHHHHH----------------HhcCCCchHHH-HH-HHHHHHcCCHHHHHHHHHHH
Q 002375 842 LRTYPYRYRAAVLMDDQKEVEAVEELSKA----------------IAFKPDLQMLH-LR-AAFYESIGDLTSAIRDSQAA 903 (929)
Q Consensus 842 ~~~~~~~~la~~~~~~g~~~eA~~~l~ka----------------l~~~p~~~~~~-~l-a~~~~~~g~~~~A~~~~~~a 903 (929)
.++..+..+|..|.+.|++.+|...|-.. .+-.|.....+ .+ -.-|...|+...|...+...
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f 167 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIARAVLQYLCLGNLRDANELFDTF 167 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHTTBHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 57788889999999999999988776321 12234444444 45 45566789999999888777
Q ss_pred hcc
Q 002375 904 LCL 906 (929)
Q Consensus 904 l~l 906 (929)
.+.
T Consensus 168 ~~~ 170 (260)
T PF04190_consen 168 TSK 170 (260)
T ss_dssp HHH
T ss_pred HHH
Confidence 655
No 412
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=68.44 E-value=2e+02 Score=32.73 Aligned_cols=27 Identities=30% Similarity=0.554 Sum_probs=18.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHcC
Q 002375 751 LNNLGSIYVECGKLDQAENCYINALDI 777 (929)
Q Consensus 751 ~~~lg~~~~~~g~~~eA~~~~~~al~~ 777 (929)
+..-|.-|...|+...|..+|.+++..
T Consensus 373 ~vLAg~~~~~~~~~~~a~rcy~~a~~v 399 (414)
T PF12739_consen 373 MVLAGHRYSKAGQKKHALRCYKQALQV 399 (414)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 334456677777777777777777654
No 413
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.35 E-value=41 Score=38.93 Aligned_cols=27 Identities=30% Similarity=0.634 Sum_probs=21.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHcC
Q 002375 751 LNNLGSIYVECGKLDQAENCYINALDI 777 (929)
Q Consensus 751 ~~~lg~~~~~~g~~~eA~~~~~~al~~ 777 (929)
|..||.+....+++..|.++|.++...
T Consensus 669 w~~Lg~~al~~~~l~lA~EC~~~a~d~ 695 (794)
T KOG0276|consen 669 WRQLGDAALSAGELPLASECFLRARDL 695 (794)
T ss_pred HHHHHHHHhhcccchhHHHHHHhhcch
Confidence 777888888888888888888877654
No 414
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=68.09 E-value=20 Score=37.88 Aligned_cols=61 Identities=18% Similarity=0.108 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHH-HHHHHHHHcCCHHHHHHHHHHHhc
Q 002375 845 YPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLH-LRAAFYESIGDLTSAIRDSQAALC 905 (929)
Q Consensus 845 ~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~-~la~~~~~~g~~~~A~~~~~~al~ 905 (929)
.++..++..+...|+++.+++.+++.+..+|-+...+ .+-..|...|+...|+..|++.-+
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 3455566666666677777777777777777665444 446666667777777766666544
No 415
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=66.21 E-value=66 Score=34.48 Aligned_cols=84 Identities=13% Similarity=0.012 Sum_probs=52.3
Q ss_pred hHHHHHHHHHhhcchHH---HHHHHHHHHhhHHHHhcccHHHHHHHHHHHHhc----Cccc----cHHHHHHHHHHhchH
Q 002375 399 NTTVMLLERLGECSTER---WQRMLALHQLGCVMFEREEYKDACYYFEAAADA----GHIY----SLAGLARAKYKVGQQ 467 (929)
Q Consensus 399 ~~~~~~Le~l~~~~~~~---~~~a~~~~~lG~~~~~~g~y~~A~~~f~~al~~----~~~~----~~a~la~~~~~~g~a 467 (929)
+.-+..|+...+-+..+ ....++....|..|.+-||-+.|.+++.+..+. +... ....++..|....-.
T Consensus 81 eeki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV 160 (393)
T KOG0687|consen 81 EEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLV 160 (393)
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHH
Confidence 33444455544444433 345667888999999999999999998876665 2222 222445555555556
Q ss_pred HHHHHHHHhhhcCCC
Q 002375 468 YSAYKLINSIISEHK 482 (929)
Q Consensus 468 ~~a~~~~~~l~~~~~ 482 (929)
....+++..++.+..
T Consensus 161 ~~~iekak~liE~Gg 175 (393)
T KOG0687|consen 161 TESIEKAKSLIEEGG 175 (393)
T ss_pred HHHHHHHHHHHHhCC
Confidence 666666666666533
No 416
>KOG2723 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=66.12 E-value=17 Score=36.87 Aligned_cols=97 Identities=16% Similarity=-0.017 Sum_probs=63.9
Q ss_pred CCCC-EEEEEcCeEEEehhHHH-hccCHHHHHHhcCCCC--cCCCCeeEecCCCCCHHHHHHHhhhhccCCCCCCCH--h
Q 002375 216 EDDS-VTFCVRDKEISFVRNKI-ASLSSPFKAMLYGGFV--ESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFCP--G 289 (929)
Q Consensus 216 ~~~~-v~~~v~~~~~~~hr~iL-aa~S~~F~~m~~~~~~--e~~~~~i~~~~~~~~~~~~~~~l~~~yt~~~~~~~~--~ 289 (929)
+..+ |.+-|||+-+..-..-| +-.-.....||++.+. -+......| |=+-..|+-||+|+.|..+. ++. .
T Consensus 6 ~~~~~v~lnvGG~~ytt~l~tL~~~~ds~L~~~f~~~~~~~~d~~g~~fI---DRDG~lFRyvL~~LRt~~l~-lpe~f~ 81 (221)
T KOG2723|consen 6 EYPDVVELNVGGAIYTTRLGTLTKFPDSMLARMFSGELPLLRDSKGRYFI---DRDGFLFRYVLDYLRTKALL-LPEDFA 81 (221)
T ss_pred ccCCceeeccCCeEEEeeccceeechHHHHHhhcCCCCCccccccccEEE---cCCcchHHHHHHHhcccccc-cchhhh
Confidence 3445 88889988775443322 2233344566665221 122334555 34567999999999996665 666 6
Q ss_pred HHHHHHHHhchhChHhHHHHHHHHHHh
Q 002375 290 IVLELLSFANRFCCEEMKSACDAHLAS 316 (929)
Q Consensus 290 ~~~~ll~~A~~~~~~~l~~~C~~~l~~ 316 (929)
++..|..-|+.|+++.+...+.+..+.
T Consensus 82 e~~~L~rEA~f~~l~~~~~~l~~~~~~ 108 (221)
T KOG2723|consen 82 EVERLVREAEFFQLEAPVTYLLNSGQI 108 (221)
T ss_pred hHHHHHHHHHHHccccHHHHHhccccc
Confidence 788999999999999888766655443
No 417
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=65.78 E-value=24 Score=35.51 Aligned_cols=54 Identities=13% Similarity=0.035 Sum_probs=28.9
Q ss_pred CCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc
Q 002375 824 SDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDL 877 (929)
Q Consensus 824 ~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~ 877 (929)
+...+|+...+.-++..|.+......+-.+|.-.|+|++|...++-+-.+.|+.
T Consensus 15 ~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~ 68 (273)
T COG4455 15 NSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD 68 (273)
T ss_pred ccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence 444555555555555555555555555555555555555555555555555544
No 418
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=64.45 E-value=22 Score=39.08 Aligned_cols=56 Identities=14% Similarity=0.052 Sum_probs=37.2
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002375 645 RQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKS 700 (929)
Q Consensus 645 ~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~a 700 (929)
.+..+|+++++.+.|+....+.+.++|....-+...|.++..+.+|.+|...+.-+
T Consensus 233 klv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSamia 288 (569)
T PF15015_consen 233 KLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAMIA 288 (569)
T ss_pred HHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777777777777777777776666666677776666666666555433
No 419
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=63.64 E-value=1.9e+02 Score=30.03 Aligned_cols=64 Identities=11% Similarity=0.078 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHhcccC--CHhHHHHHHHHHH-HhccHHHHHHHHHHHHhhcCC
Q 002375 517 PYKYRAVAKMEEGQIRAAISEIDRIIVFKL--SVDCLELRAWLFI-AADDYESALRDTLALLALESN 580 (929)
Q Consensus 517 a~~~~a~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~a~~~~-~~g~~~eA~~~~~~al~~~p~ 580 (929)
-+..+|.+..+.|+|++++..+.+++..++ +.+-...+..+|- ..|....+.+.+....+....
T Consensus 3 ~li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~ 69 (236)
T PF00244_consen 3 ELIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEEN 69 (236)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcc
Confidence 356789999999999999999999998876 5555666666663 356777777777666655443
No 420
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=62.66 E-value=24 Score=37.44 Aligned_cols=61 Identities=16% Similarity=0.037 Sum_probs=37.6
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch-HHHHHHHHHHHh
Q 002375 659 AMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILAD 719 (929)
Q Consensus 659 A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~l~p~~-~a~~~l~~~l~~ 719 (929)
|..+|.+|..+.|++...++.+|.++...|+.-.|+-+|-+++.....+ .+..++...+..
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 5567777777777777777777777777777777777777776544333 455555555544
No 421
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=62.60 E-value=1.2e+02 Score=32.75 Aligned_cols=174 Identities=9% Similarity=0.001 Sum_probs=93.8
Q ss_pred HHHHHhcCCCChHHH---HHHHHHHHHhcCHHHHHHHHHHHHhc----------C--------------------Cch--
Q 002375 629 INQMLINDPGKSFLR---FRQSLLLLRLNCQKAAMRCLRLARNH----------S--------------------SSE-- 673 (929)
Q Consensus 629 ~~~al~~~p~~~~~~---~~lg~~~~~~g~~~~A~~~l~~al~~----------~--------------------p~~-- 673 (929)
|++..+.-|++.... ...|.++...++|.+....+..+-.. . |..
T Consensus 44 y~Q~~q~~kk~~~~il~~L~~Gl~a~~~~dya~S~~~ldAae~~~KqqqD~~~~S~~~A~~vGst~vNDNi~~Y~g~~YE 123 (449)
T COG3014 44 YEQSKQFTKKKKNALLWDLQNGLSALYARDYATSLGVLDAAEQRFKQQQDTQSASTRGAGYVGATMINDNVRAYGGNIYE 123 (449)
T ss_pred HHHHHHhhhhhhHHHHHhhhhhHHHHHhhhHHHhhhHHHHHHHHHhhhhhhheeccccccchhhhhhccchhhcCchhHH
Confidence 455555555443322 35677777777777766665544211 1 111
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHH
Q 002375 674 -HERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALN 752 (929)
Q Consensus 674 -~~~~~~lg~~~~~~g~~~eA~~~~~~al~l~p~~~a~~~l~~~l~~~~~~~~~~~~a~~~~~~Al~~~~~~l~~~~a~~ 752 (929)
.-..+++|.-|+..++++.|+--|+++......-.-++.. ..++|++.....-.....-.
T Consensus 124 ~~~~n~YkaLNYm~~nD~~~ArVEfnRan~rQ~~AKe~~~~-------------------ei~ka~~e~ds~k~~~N~~~ 184 (449)
T COG3014 124 GVLINYYKALNYMLLNDSAKARVEFNRANERQRRAKEFYYE-------------------EVQKAIKEIDSSKHNINMER 184 (449)
T ss_pred HHHHHHHHHhhHHHhcchhhhHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHhccCCCchhH
Confidence 1234667888999999999999999998754322000000 11122221111110000000
Q ss_pred HHHH-HHHHcCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHh
Q 002375 753 NLGS-IYVECGKLDQAENCYINALDIKHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS 821 (929)
Q Consensus 753 ~lg~-~~~~~g~~~eA~~~~~~al~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 821 (929)
.++. ...-...|..-...|+.--.+.++.+-+..+..+...|++.++...+..+.-+.|+......+.+
T Consensus 185 ~~ae~s~~i~n~Y~ny~~~yea~~~l~npYv~Yl~~lf~a~n~dv~kg~~~~~e~~gi~qd~~~~~~qY~ 254 (449)
T COG3014 185 SRAEVSEILNNTYSNYLDKYEAYQGLLNPYVSYLSGLFYALNGDVNKGLGYLNEAYGISQDQSPFVAQYL 254 (449)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhcccCccHhHHHHHHHHHhccCchhhHHHHHhc
Confidence 1111 00111222222333443333456777788888888889999999999999888888665554444
No 422
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=62.49 E-value=1.1e+02 Score=31.99 Aligned_cols=59 Identities=8% Similarity=-0.175 Sum_probs=39.8
Q ss_pred hHHHHHHHHHHHhccHHHHHHHHHHHHhhcCCchhhhccccHHHHHHHHHHhhcccchH
Q 002375 549 DCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPA 607 (929)
Q Consensus 549 ~~~~~~a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A 607 (929)
.....+|.-|+..|++++|++.|+.+........++.-....+..+..++...|+.+..
T Consensus 179 ~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~ 237 (247)
T PF11817_consen 179 YLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDY 237 (247)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 34667899999999999999999999777665554322223444455555555554443
No 423
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=62.24 E-value=29 Score=36.90 Aligned_cols=61 Identities=21% Similarity=0.082 Sum_probs=47.9
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccC-CHhHHHHHHHHHHH
Q 002375 500 KIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIA 560 (929)
Q Consensus 500 Ai~~~~~al~l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~ 560 (929)
|...|.+|+.+.|.+..+|..+|.+....|+.-.|+-.|-+++-... .+.+..++...+.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999985443 55555555555544
No 424
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=60.66 E-value=2.8e+02 Score=30.94 Aligned_cols=68 Identities=13% Similarity=-0.067 Sum_probs=53.2
Q ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHh--c--CCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch
Q 002375 640 SFLRFRQSLLLLRLNCQKAAMRCLRLARN--H--SSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF 707 (929)
Q Consensus 640 ~~~~~~lg~~~~~~g~~~~A~~~l~~al~--~--~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~l~p~~ 707 (929)
+.+...+-..|...+.|+.|-....+..- . +...+..++++|.+-.-+++|..|.+++-+|+...|+.
T Consensus 209 avLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 209 AVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQH 280 (493)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence 34455666778888899999888777641 1 12335667889999999999999999999999999976
No 425
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=59.88 E-value=45 Score=31.43 Aligned_cols=56 Identities=20% Similarity=0.131 Sum_probs=32.8
Q ss_pred HhcCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHhhhhh
Q 002375 871 IAFKPDLQMLHLRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNRARDQASH 926 (929)
Q Consensus 871 l~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~l~~~~~~ 926 (929)
+++-.........+.-....|++.-|.+....++..+|+|.++..+...+.++...
T Consensus 64 v~l~GG~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 64 VELAGGADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY 119 (141)
T ss_dssp HHHTTCHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 33444444444555566667777777777777777777777777776666555443
No 426
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=58.47 E-value=1.2e+02 Score=33.53 Aligned_cols=29 Identities=24% Similarity=0.288 Sum_probs=25.2
Q ss_pred HHHHHHhhHHHHhcccHHHHHHHHHHHHh
Q 002375 419 MLALHQLGCVMFEREEYKDACYYFEAAAD 447 (929)
Q Consensus 419 a~~~~~lG~~~~~~g~y~~A~~~f~~al~ 447 (929)
-.++-.+|..|...|+++.|++.|.++-.
T Consensus 150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~Rd 178 (466)
T KOG0686|consen 150 RRALEDLGDHYLDCGQLDNALRCYSRARD 178 (466)
T ss_pred HHHHHHHHHHHHHhccHHHHHhhhhhhhh
Confidence 45778999999999999999999998543
No 427
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=58.42 E-value=36 Score=35.83 Aligned_cols=61 Identities=13% Similarity=-0.045 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002375 642 LRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSIS 702 (929)
Q Consensus 642 ~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~ 702 (929)
.....+..|...|.+.+|+++.+++++.+|-+...+..+-.++...|+--.|.+.|++.-+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 4456677889999999999999999999999999999999999999998888888876543
No 428
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=58.30 E-value=2.7e+02 Score=30.16 Aligned_cols=181 Identities=15% Similarity=0.065 Sum_probs=103.9
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccC--CHhHHHHHHHHHHHhccHHHHHHHHHHHHh
Q 002375 499 EKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL--SVDCLELRAWLFIAADDYESALRDTLALLA 576 (929)
Q Consensus 499 ~Ai~~~~~al~l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~a~~~~~~g~~~eA~~~~~~al~ 576 (929)
+++..=.-...+-|..++++-..+..+++..+... .+.. .+-.+...-.....-+-.+++...+.+++.
T Consensus 214 EairLgRll~~L~p~EPE~~GL~ALmll~~sR~~A---------R~~~~G~~vlL~dQDr~lW~r~lI~eg~all~rA~~ 284 (415)
T COG4941 214 EAIRLGRLLARLLPGEPEALGLLALMLLQESRRPA---------RFDADGEPVLLEDQDRSLWDRALIDEGLALLDRALA 284 (415)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhh---------ccCCCCCeeeccccchhhhhHHHHHHHHHHHHHHHH
Confidence 67777777788899999988887777665432211 1111 010111111111223345667777777776
Q ss_pred hcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHHHHhcCH
Q 002375 577 LESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQ 656 (929)
Q Consensus 577 ~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~d~~~al~~~~~al~~~p~~~~~~~~lg~~~~~~g~~ 656 (929)
...--+ + .....+..++.... .....|...|..+..++..-..++.+-.+.+.......-.
T Consensus 285 ~~~pGP-Y----qlqAAIaa~HA~a~--------------~aedtDW~~I~aLYdaL~~~apSPvV~LNRAVAla~~~Gp 345 (415)
T COG4941 285 SRRPGP-Y----QLQAAIAALHARAR--------------RAEDTDWPAIDALYDALEQAAPSPVVTLNRAVALAMREGP 345 (415)
T ss_pred cCCCCh-H----HHHHHHHHHHHhhc--------------ccCCCChHHHHHHHHHHHHhCCCCeEeehHHHHHHHhhhH
Confidence 543222 0 00111111111100 0001111223344555555455666777788887777778
Q ss_pred HHHHHHHHHHHhc--CCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch
Q 002375 657 KAAMRCLRLARNH--SSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF 707 (929)
Q Consensus 657 ~~A~~~l~~al~~--~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~l~p~~ 707 (929)
+.++...+..... -......+...|.++.++|+.++|...|++++.+.++.
T Consensus 346 ~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~ 398 (415)
T COG4941 346 AAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNA 398 (415)
T ss_pred HhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCCh
Confidence 8888887776654 23345566778999999999999999999999998877
No 429
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=58.19 E-value=54 Score=27.13 Aligned_cols=31 Identities=10% Similarity=-0.027 Sum_probs=23.3
Q ss_pred HHHHHHHhhHHHHhcccHHHHHHHHHHHHhc
Q 002375 418 RMLALHQLGCVMFEREEYKDACYYFEAAADA 448 (929)
Q Consensus 418 ~a~~~~~lG~~~~~~g~y~~A~~~f~~al~~ 448 (929)
.+..+...+.-+-..|++.+|+.+|+.+++.
T Consensus 5 ~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~ 35 (75)
T cd02682 5 MARKYAINAVKAEKEGNAEDAITNYKKAIEV 35 (75)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 3445566777777888888888888888775
No 430
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=57.73 E-value=1.8e+02 Score=32.38 Aligned_cols=61 Identities=28% Similarity=0.431 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHcC-----CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 002375 749 QALNNLGSIYVECGKLDQAENCYINALDI-----KHTRAHQGLARVYYLKNELKAAYDEMTKLLEK 809 (929)
Q Consensus 749 ~a~~~lg~~~~~~g~~~eA~~~~~~al~~-----~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~ 809 (929)
.++..+|.-|...|+++.|+.+|.++-.. .....+.++-.+-...|+|..-..+-.++...
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st 216 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAEST 216 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhC
Confidence 67889999999999999999999997666 12357788888888889888777666666543
No 431
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=57.54 E-value=2.9e+02 Score=30.18 Aligned_cols=48 Identities=23% Similarity=0.326 Sum_probs=29.0
Q ss_pred cHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHcCCHHHHHHH
Q 002375 844 TYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLHLRAAFYESIGDLTSAIRD 899 (929)
Q Consensus 844 ~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~la~~~~~~g~~~~A~~~ 899 (929)
|-.|.-...+..+.|+..+|..+..+ + ++ ..+...|.+.|++.+|.+.
T Consensus 237 PIGyepFv~~~~~~~~~~eA~~yI~k---~-~~----~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 237 PIGYEPFVEACLKYGNKKEASKYIPK---I-PD----EERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred CCChHHHHHHHHHCCCHHHHHHHHHh---C-Ch----HHHHHHHHHCCCHHHHHHH
Confidence 44455555666677777777777776 1 11 2345556666777776654
No 432
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=57.51 E-value=31 Score=36.24 Aligned_cols=56 Identities=21% Similarity=0.189 Sum_probs=44.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHH-HHHHHHHHcCCHHHHHHHHHHH
Q 002375 848 RYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLH-LRAAFYESIGDLTSAIRDSQAA 903 (929)
Q Consensus 848 ~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~-~la~~~~~~g~~~~A~~~~~~a 903 (929)
...+..|...|.+.+|+++.++++.++|-+...+ .+-.++..+||--.|+..|++.
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 3456678888999999999999999988776555 6677888888888888877765
No 433
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=57.17 E-value=2.6e+02 Score=29.55 Aligned_cols=104 Identities=14% Similarity=0.095 Sum_probs=52.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHcC-----CChHH---HHHHHHHHHHhCCHHHHHHHHHH--HHH-HccCCHHHHHHHh
Q 002375 753 NLGSIYVECGKLDQAENCYINALDI-----KHTRA---HQGLARVYYLKNELKAAYDEMTK--LLE-KAQYSASAFEKRS 821 (929)
Q Consensus 753 ~lg~~~~~~g~~~eA~~~~~~al~~-----~~~~a---~~~la~~~~~~g~~~~A~~~~~~--al~-~~p~~~~~~~~lg 821 (929)
.-|.......+|.-|..+|-.+++- .+..+ +..+-..-...+..++-...++. .++ .+.....+....+
T Consensus 211 ~sGIlhcdd~dyktA~SYF~Ea~Egft~l~~d~kAc~sLkYmlLSkIMlN~~~evk~vl~~K~t~~~y~~r~I~am~ava 290 (421)
T COG5159 211 LSGILHCDDRDYKTASSYFIEALEGFTLLKMDVKACVSLKYMLLSKIMLNRREEVKAVLRNKNTLKHYDDRMIRAMLAVA 290 (421)
T ss_pred hccceeeccccchhHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhHHHHHHHHccchhHhhhhhhhHHHHHHHH
Confidence 3466667778899999999888876 22222 22222222233333333322211 111 1111222222222
Q ss_pred ------hcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHh
Q 002375 822 ------EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMD 856 (929)
Q Consensus 822 ------~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~ 856 (929)
.+.++..|++.|..-+..+|-...-+..+-..+..
T Consensus 291 ea~~NRsL~df~~aL~qY~~el~~D~~iRsHl~~LYD~LLe 331 (421)
T COG5159 291 EAFGNRSLKDFSDALAQYSDELHQDSFIRSHLQYLYDVLLE 331 (421)
T ss_pred HHhCCCcHhhHHHHHHHhhHHhccCHHHHHHHHHHHHHHHH
Confidence 34577888888888777777444444444444444
No 434
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=57.04 E-value=1e+02 Score=34.30 Aligned_cols=74 Identities=14% Similarity=0.040 Sum_probs=50.7
Q ss_pred HHHHHHhcCHHHHHHHHHHHHhcCC--------c-----h-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch-
Q 002375 647 SLLLLRLNCQKAAMRCLRLARNHSS--------S-----E-----HERLVYEGWILYDTGHREEALSRAEKSISIERTF- 707 (929)
Q Consensus 647 g~~~~~~g~~~~A~~~l~~al~~~p--------~-----~-----~~~~~~lg~~~~~~g~~~eA~~~~~~al~l~p~~- 707 (929)
|...+++++|..|..-|+.++++.. . + ..+-..+..+|.++++.+.|+....+.|.++|.+
T Consensus 183 as~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~f 262 (569)
T PF15015_consen 183 ASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYF 262 (569)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchh
Confidence 4455666677777666666665421 1 1 1233567899999999999999999999999988
Q ss_pred HHHHHHHHHHHhc
Q 002375 708 EAFFLKAYILADT 720 (929)
Q Consensus 708 ~a~~~l~~~l~~~ 720 (929)
..+...+.+...+
T Consensus 263 rnHLrqAavfR~L 275 (569)
T PF15015_consen 263 RNHLRQAAVFRRL 275 (569)
T ss_pred hHHHHHHHHHHHH
Confidence 5555455544433
No 435
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=55.38 E-value=23 Score=25.88 Aligned_cols=25 Identities=20% Similarity=0.024 Sum_probs=23.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHh
Q 002375 848 RYRAAVLMDDQKEVEAVEELSKAIA 872 (929)
Q Consensus 848 ~~la~~~~~~g~~~eA~~~l~kal~ 872 (929)
+.+|.+|..+|+.+.|.+.++.++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5789999999999999999999995
No 436
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=55.34 E-value=2.8e+02 Score=29.29 Aligned_cols=66 Identities=17% Similarity=0.042 Sum_probs=41.4
Q ss_pred CChHHHHHHHHHHHHhcCHHHHHHHHHHH----------------HhcCCchHHHHHHHHH-HHHHcCCHHHHHHHHHHH
Q 002375 638 GKSFLRFRQSLLLLRLNCQKAAMRCLRLA----------------RNHSSSEHERLVYEGW-ILYDTGHREEALSRAEKS 700 (929)
Q Consensus 638 ~~~~~~~~lg~~~~~~g~~~~A~~~l~~a----------------l~~~p~~~~~~~~lg~-~~~~~g~~~eA~~~~~~a 700 (929)
.++.++..+|..+.+.|++.+|..+|-.. .+-.|...+.+...|. -|...++...|...+..-
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f 167 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIARAVLQYLCLGNLRDANELFDTF 167 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHTTBHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 56788999999999999999888776321 1234444555544443 356678888888777665
Q ss_pred Hhh
Q 002375 701 ISI 703 (929)
Q Consensus 701 l~l 703 (929)
.+.
T Consensus 168 ~~~ 170 (260)
T PF04190_consen 168 TSK 170 (260)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 437
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=55.03 E-value=30 Score=37.42 Aligned_cols=54 Identities=15% Similarity=0.145 Sum_probs=42.9
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHH
Q 002375 630 NQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWI 683 (929)
Q Consensus 630 ~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~ 683 (929)
..+++.++....+++.++..+....++++|++.+..+....|.+......+...
T Consensus 299 ~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~ 352 (372)
T KOG0546|consen 299 NEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENV 352 (372)
T ss_pred ccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHh
Confidence 445557788888899999999999999999999999999999887765554443
No 438
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=54.93 E-value=37 Score=33.99 Aligned_cols=52 Identities=19% Similarity=0.093 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCH
Q 002375 860 EVEAVEELSKAIAFKPDLQMLHLRAAFYESIGDLTSAIRDSQAALCLDPNHM 911 (929)
Q Consensus 860 ~~eA~~~l~kal~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~ 911 (929)
.+..++..++.+...|+...+..++.++...|+.++|....+++..+.|.+.
T Consensus 127 l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~~~ 178 (193)
T PF11846_consen 127 LEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRLYPADE 178 (193)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcHH
Confidence 4455667777888888888888889999999999999999999999999443
No 439
>PF12854 PPR_1: PPR repeat
Probab=54.42 E-value=28 Score=23.65 Aligned_cols=27 Identities=19% Similarity=0.171 Sum_probs=13.1
Q ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHH
Q 002375 875 PDLQMLHLRAAFYESIGDLTSAIRDSQ 901 (929)
Q Consensus 875 p~~~~~~~la~~~~~~g~~~~A~~~~~ 901 (929)
|+...+..+-..|.+.|+.++|.+.|+
T Consensus 5 Pd~~ty~~lI~~~Ck~G~~~~A~~l~~ 31 (34)
T PF12854_consen 5 PDVVTYNTLIDGYCKAGRVDEAFELFD 31 (34)
T ss_pred CcHhHHHHHHHHHHHCCCHHHHHHHHH
Confidence 344444444444555555555555544
No 440
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=54.39 E-value=1.8e+02 Score=26.94 Aligned_cols=48 Identities=10% Similarity=-0.002 Sum_probs=36.0
Q ss_pred HHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002375 650 LLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAE 698 (929)
Q Consensus 650 ~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~ 698 (929)
+...+.+...+.+++.++..++.++..+..+..+|.+. +..+.+..++
T Consensus 17 ~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~-~~~~ll~~l~ 64 (140)
T smart00299 17 FEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKY-DPQKEIERLD 64 (140)
T ss_pred HHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHH-CHHHHHHHHH
Confidence 34457888999999999988888888888888888765 3455555555
No 441
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.83 E-value=3.1e+02 Score=33.53 Aligned_cols=240 Identities=16% Similarity=0.078 Sum_probs=112.2
Q ss_pred HHHHhcCHHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-ccch-HHHHHHHHHHHhcCCCCC
Q 002375 649 LLLRLNCQKAAMRCLRLARNHSSSE-HERLVYEGWILYDTGHREEALSRAEKSISI-ERTF-EAFFLKAYILADTNLDPE 725 (929)
Q Consensus 649 ~~~~~g~~~~A~~~l~~al~~~p~~-~~~~~~lg~~~~~~g~~~eA~~~~~~al~l-~p~~-~a~~~l~~~l~~~~~~~~ 725 (929)
++...+.|+-|+...+. ...+++. .+.+...|.-++..|++++|...|-+.+.. +|.. --.+ +++.
T Consensus 343 iL~kK~ly~~Ai~LAk~-~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~Vi~kf----------Ldaq 411 (933)
T KOG2114|consen 343 ILFKKNLYKVAINLAKS-QHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSEVIKKF----------LDAQ 411 (933)
T ss_pred HHHHhhhHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHHHHHHh----------cCHH
Confidence 44555667777765544 2233332 567788899999999999999999998864 3433 1001 0000
Q ss_pred ChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCh--HHHHHHHHHHHHhCCHHHHHHHH
Q 002375 726 SSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIKHT--RAHQGLARVYYLKNELKAAYDEM 803 (929)
Q Consensus 726 ~~~~a~~~~~~Al~~~~~~l~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~~--~a~~~la~~~~~~g~~~~A~~~~ 803 (929)
...... .|-+++ .++.+....--..|-.+|.+.++.+.-.+..++.- .+.. +.- ..-.++.+.+-.++|.-..
T Consensus 412 ~IknLt-~YLe~L--~~~gla~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~fd~e-~al~Ilr~snyl~~a~~LA 486 (933)
T KOG2114|consen 412 RIKNLT-SYLEAL--HKKGLANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFFDVE-TALEILRKSNYLDEAELLA 486 (933)
T ss_pred HHHHHH-HHHHHH--HHcccccchhHHHHHHHHHHhcchHHHHHHHhcCC-CcceeeeHH-HHHHHHHHhChHHHHHHHH
Confidence 000000 111111 01112222333445677888888766544433322 1000 000 1112233334344444332
Q ss_pred HHHHHHccCCHHHHHHHh-hcCCHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-Cc--h
Q 002375 804 TKLLEKAQYSASAFEKRS-EYSDREMAKNDLNMATQLDPL-RTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKP-DL--Q 878 (929)
Q Consensus 804 ~~al~~~p~~~~~~~~lg-~~~~~~~A~~~~~~al~l~p~-~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p-~~--~ 878 (929)
.+ ...+.++...+- ..+++++|+.++.. +.|. ........|..++.. ..++-...+-+.+.... .. .
T Consensus 487 ~k----~~~he~vl~ille~~~ny~eAl~yi~s---lp~~e~l~~l~kyGk~Ll~h-~P~~t~~ili~~~t~~~~~~~~~ 558 (933)
T KOG2114|consen 487 TK----FKKHEWVLDILLEDLHNYEEALRYISS---LPISELLRTLNKYGKILLEH-DPEETMKILIELITELNSQGKGK 558 (933)
T ss_pred HH----hccCHHHHHHHHHHhcCHHHHHHHHhc---CCHHHHHHHHHHHHHHHHhh-ChHHHHHHHHHHHhhcCCCCCCc
Confidence 22 222444433333 56888888888765 2222 223344566666653 44444444444443221 11 0
Q ss_pred HHH----HHHHHHHHcCCHHHHHHHHHHHhccCCCCHH
Q 002375 879 MLH----LRAAFYESIGDLTSAIRDSQAALCLDPNHME 912 (929)
Q Consensus 879 ~~~----~la~~~~~~g~~~~A~~~~~~al~l~P~~~~ 912 (929)
... -.-.++.-.+++..-...++...+..|+.++
T Consensus 559 ~~s~~~~~~~~i~if~~~~~~~~~Fl~~~~E~s~~s~e 596 (933)
T KOG2114|consen 559 SLSNIPDSIEFIGIFSQNYQILLNFLESMSEISPDSEE 596 (933)
T ss_pred hhhcCccchhheeeeccCHHHHHHHHHHHHhcCCCchh
Confidence 000 0112223345555555555555566555554
No 442
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=53.61 E-value=16 Score=32.37 Aligned_cols=30 Identities=17% Similarity=0.172 Sum_probs=28.7
Q ss_pred hhhHHHHHHHHHhhChHHHHHHHHHHHhhh
Q 002375 321 IEDALILIDYGLEERATLLVASCLQVLLRE 350 (929)
Q Consensus 321 ~~n~~~~~~~a~~~~~~~L~~~c~~~i~~~ 350 (929)
.+++..++.+|..++.+.|.+.|..++.++
T Consensus 81 ~~~~~~ll~lA~~~~~~~L~~~~~~~l~~~ 110 (111)
T PF00651_consen 81 DENVEELLELADKLQIPELKKACEKFLQES 110 (111)
T ss_dssp TTTHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhC
Confidence 899999999999999999999999999875
No 443
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=53.12 E-value=2.5e+02 Score=31.91 Aligned_cols=167 Identities=12% Similarity=0.016 Sum_probs=80.7
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhcccCCH-------hHHHHHHHHHHHhccH-------HHHHHHHHHHHhhcCC---
Q 002375 518 YKYRAVAKMEEGQIRAAISEIDRIIVFKLSV-------DCLELRAWLFIAADDY-------ESALRDTLALLALESN--- 580 (929)
Q Consensus 518 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~-------~~~~~~a~~~~~~g~~-------~eA~~~~~~al~~~p~--- 580 (929)
.-.+|...+..+||+.|...|+.+..--.+. .+....|.+.+..+.. ++....++.++...-.
T Consensus 211 ~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~~~~ 290 (414)
T PF12739_consen 211 MRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLKSAL 290 (414)
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHhhhc
Confidence 4456888889999999999988876321111 1233334444433321 2333344443332211
Q ss_pred --chhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCC---ChHHHHHHHHHH--HHh
Q 002375 581 --YMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPG---KSFLRFRQSLLL--LRL 653 (929)
Q Consensus 581 --~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~d~~~al~~~~~al~~~p~---~~~~~~~lg~~~--~~~ 653 (929)
........++..+.+.+....+.+.++..++ +....+.+..+.. .+.++-..|.++ ...
T Consensus 291 ~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~--------------~~~~~~~l~~~l~~~~~alllE~~a~~~~~~~~ 356 (414)
T PF12739_consen 291 PRCSLPYYALRCALLLAELLKSRGGYWEAADQL--------------IRWTSEILESDLRPFGSALLLEQAAYCYASLRS 356 (414)
T ss_pred cccccccchHHHHHHHHHHHHhcCccHHHHHHH--------------HHHHHHHHhhhhhhHhhHHHHHHHHHhhccccc
Confidence 0110111255555666666666666654433 2222232211222 333333444444 111
Q ss_pred cCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc
Q 002375 654 NCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIER 705 (929)
Q Consensus 654 g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~l~p 705 (929)
+....-..-++ ..+--+..-|.-|.+.|+...|+.+|.+++....
T Consensus 357 ~~~~~~~~r~R-------K~af~~vLAg~~~~~~~~~~~a~rcy~~a~~vY~ 401 (414)
T PF12739_consen 357 NRPSPGLTRFR-------KYAFHMVLAGHRYSKAGQKKHALRCYKQALQVYE 401 (414)
T ss_pred CCCCccchhhH-------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhC
Confidence 00000000000 1122334457889999999999999999987654
No 444
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=53.04 E-value=27 Score=22.59 Aligned_cols=29 Identities=10% Similarity=-0.136 Sum_probs=19.3
Q ss_pred cCHHHHHHHHHHHHhcCCchHHHHHHHHH
Q 002375 654 NCQKAAMRCLRLARNHSSSEHERLVYEGW 682 (929)
Q Consensus 654 g~~~~A~~~l~~al~~~p~~~~~~~~lg~ 682 (929)
|+.+.|...|++++...|..+..|...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 35566777777777777776666665544
No 445
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=52.31 E-value=2.7e+02 Score=31.31 Aligned_cols=62 Identities=26% Similarity=0.208 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHH--HHHH--HHHHHHHcCCHHHHHHHHHHHHhh
Q 002375 642 LRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHE--RLVY--EGWILYDTGHREEALSRAEKSISI 703 (929)
Q Consensus 642 ~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~--~~~~--lg~~~~~~g~~~eA~~~~~~al~l 703 (929)
.....+...+..++|..|.+.++.+...-|.... .+.. .|.-++..-++.+|.+.++..+..
T Consensus 133 ~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 133 REWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3456677788999999999999999885333332 3333 466678899999999999998764
No 446
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=51.88 E-value=3.1e+02 Score=30.79 Aligned_cols=28 Identities=18% Similarity=0.185 Sum_probs=23.3
Q ss_pred HHHHhhHHHHhcccHHHHHHHHHHHHhc
Q 002375 421 ALHQLGCVMFEREEYKDACYYFEAAADA 448 (929)
Q Consensus 421 ~~~~lG~~~~~~g~y~~A~~~f~~al~~ 448 (929)
.....+...+..++|..|...|+.....
T Consensus 133 ~~~~~a~~l~n~~~y~aA~~~l~~l~~r 160 (379)
T PF09670_consen 133 REWRRAKELFNRYDYGAAARILEELLRR 160 (379)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 3445677889999999999999998875
No 447
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=51.59 E-value=78 Score=33.13 Aligned_cols=80 Identities=18% Similarity=0.093 Sum_probs=57.7
Q ss_pred hHHHHHHHHHHhhchhccCch---hHHHHHHHHHHHHcCCHHHHHHHHHHHHcC---C-----ChHHHHHHHHHHHHhCC
Q 002375 727 STYVIQLLEEALRCPSDGLRK---GQALNNLGSIYVECGKLDQAENCYINALDI---K-----HTRAHQGLARVYYLKNE 795 (929)
Q Consensus 727 ~~~a~~~~~~Al~~~~~~l~~---~~a~~~lg~~~~~~g~~~eA~~~~~~al~~---~-----~~~a~~~la~~~~~~g~ 795 (929)
....+..+.+|...|++.-.. ......+|..|...|++++|++.|+.+... + -......+..++...|+
T Consensus 154 s~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~ 233 (247)
T PF11817_consen 154 SKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGD 233 (247)
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCC
Confidence 344455677777777665432 366778999999999999999999999654 1 12466778888888888
Q ss_pred HHHHHHHHHHH
Q 002375 796 LKAAYDEMTKL 806 (929)
Q Consensus 796 ~~~A~~~~~~a 806 (929)
.+..+...-++
T Consensus 234 ~~~~l~~~leL 244 (247)
T PF11817_consen 234 VEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHHH
Confidence 88777654443
No 448
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.01 E-value=4.7e+02 Score=30.65 Aligned_cols=74 Identities=14% Similarity=0.042 Sum_probs=48.4
Q ss_pred HhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHh-----c----------------CCchHH---HHHHHHHHHHHcC
Q 002375 633 LINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARN-----H----------------SSSEHE---RLVYEGWILYDTG 688 (929)
Q Consensus 633 l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~-----~----------------~p~~~~---~~~~lg~~~~~~g 688 (929)
+...|.+...+..++.+...+|+.+-|....++++= . .|.+-. +++..-..+.+.|
T Consensus 277 L~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RG 356 (665)
T KOG2422|consen 277 LISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRG 356 (665)
T ss_pred eccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 344577777888888888888887777766666641 1 122222 1222234455678
Q ss_pred CHHHHHHHHHHHHhhccc
Q 002375 689 HREEALSRAEKSISIERT 706 (929)
Q Consensus 689 ~~~eA~~~~~~al~l~p~ 706 (929)
-+.-|.++.+-.++++|.
T Consensus 357 C~rTA~E~cKlllsLdp~ 374 (665)
T KOG2422|consen 357 CWRTALEWCKLLLSLDPS 374 (665)
T ss_pred ChHHHHHHHHHHhhcCCc
Confidence 888888888888888887
No 449
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=50.56 E-value=1.5e+02 Score=31.20 Aligned_cols=100 Identities=9% Similarity=0.013 Sum_probs=61.0
Q ss_pred HHHHHHHHHhhHHHHhcccHHHHHHHHHHHHhcC--------ccccHHHHHHHHHHhchHHHHHHHHHhhhcCCCcchhh
Q 002375 416 WQRMLALHQLGCVMFEREEYKDACYYFEAAADAG--------HIYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWM 487 (929)
Q Consensus 416 ~~~a~~~~~lG~~~~~~g~y~~A~~~f~~al~~~--------~~~~~a~la~~~~~~g~a~~a~~~~~~l~~~~~~~~~~ 487 (929)
...+++..++|..|.+-+|.+.+.++..+.+... -......++..|..+.-..+.++.+..++.+...+..-
T Consensus 112 ~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRr 191 (412)
T COG5187 112 TEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERR 191 (412)
T ss_pred hHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhh
Confidence 3456788899999999999999999887776642 12222345555555555666666665555553222221
Q ss_pred hHHHHHhhhhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHh
Q 002375 488 YQERSLYNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRII 542 (929)
Q Consensus 488 ~~~~~l~~~~~~Ai~~~~~al~l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al 542 (929)
.+- -.+.|...+...+|.+|-..+...+
T Consensus 192 NRy---------------------------K~Y~Gi~~m~~RnFkeAa~Ll~d~l 219 (412)
T COG5187 192 NRY---------------------------KVYKGIFKMMRRNFKEAAILLSDIL 219 (412)
T ss_pred hhH---------------------------HHHHHHHHHHHHhhHHHHHHHHHHh
Confidence 111 1233555566667777777766665
No 450
>PF13041 PPR_2: PPR repeat family
Probab=50.00 E-value=54 Score=24.25 Aligned_cols=39 Identities=18% Similarity=0.094 Sum_probs=28.7
Q ss_pred CcHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCchHHH
Q 002375 843 RTYPYRYRAAVLMDDQKEVEAVEELSKAIAF--KPDLQMLH 881 (929)
Q Consensus 843 ~~~~~~~la~~~~~~g~~~eA~~~l~kal~~--~p~~~~~~ 881 (929)
+...|..+-..+.+.|++++|.+.|++..+. .|+...+.
T Consensus 2 ~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~ 42 (50)
T PF13041_consen 2 DVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYN 42 (50)
T ss_pred chHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 3456777888888899999999999888764 45554444
No 451
>PF13041 PPR_2: PPR repeat family
Probab=49.81 E-value=59 Score=24.02 Aligned_cols=30 Identities=17% Similarity=-0.140 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 002375 674 HERLVYEGWILYDTGHREEALSRAEKSISI 703 (929)
Q Consensus 674 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~l 703 (929)
...|..+-..+.+.|++++|.+.|++..+.
T Consensus 3 ~~~yn~li~~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 3 VVTYNTLISGYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred hHHHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 345555666666666666666666666653
No 452
>PF12854 PPR_1: PPR repeat
Probab=49.80 E-value=37 Score=23.00 Aligned_cols=26 Identities=12% Similarity=-0.114 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002375 674 HERLVYEGWILYDTGHREEALSRAEK 699 (929)
Q Consensus 674 ~~~~~~lg~~~~~~g~~~eA~~~~~~ 699 (929)
...|..+-..|.+.|+.++|.+.+++
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 56677777788888888888877765
No 453
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=48.38 E-value=2.2e+02 Score=26.18 Aligned_cols=112 Identities=12% Similarity=0.068 Sum_probs=63.5
Q ss_pred HHHHHHHHhhcc---ch-HHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCc--hhHHHHHHHHHHHHcCCHHHH
Q 002375 694 LSRAEKSISIER---TF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLR--KGQALNNLGSIYVECGKLDQA 767 (929)
Q Consensus 694 ~~~~~~al~l~p---~~-~a~~~l~~~l~~~~~~~~~~~~a~~~~~~Al~~~~~~l~--~~~a~~~lg~~~~~~g~~~eA 767 (929)
...|++.+.... +. +.|........+.....+........+++++..+...-+ ...-+..+=..|...-+ ++
T Consensus 5 r~~~e~~i~~~~~~dDPL~~w~~yI~w~~~~~p~~~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~~--~~ 82 (126)
T PF08311_consen 5 RQEFEEQIRSYEEGDDPLDPWLRYIKWIEENYPSGGKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADLSS--DP 82 (126)
T ss_dssp HHHHHHHHHCCGGSS-CHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTBS--HH
T ss_pred HHHHHHHHHHccCCCCChHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHcc--CH
Confidence 344455444433 22 455544444444433334445555567777766655422 22223333333333332 77
Q ss_pred HHHHHHHHcC----CChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 002375 768 ENCYINALDI----KHTRAHQGLARVYYLKNELKAAYDEMTKLL 807 (929)
Q Consensus 768 ~~~~~~al~~----~~~~a~~~la~~~~~~g~~~~A~~~~~~al 807 (929)
.+.|..+... ..+..|...|..+...|++++|.+.|+..+
T Consensus 83 ~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 83 REIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 7777776654 566788888999999999999999988764
No 454
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=48.24 E-value=6 Score=42.18 Aligned_cols=53 Identities=11% Similarity=0.077 Sum_probs=43.0
Q ss_pred HHHHHHHHHHhhcCChhhHHHHHHHHHhhChHHHHHHHHHHHhhhhhhhcCcchh
Q 002375 306 MKSACDAHLASLVGDIEDALILIDYGLEERATLLVASCLQVLLRELPSSLYNPKV 360 (929)
Q Consensus 306 l~~~C~~~l~~~~~~~~n~~~~~~~a~~~~~~~L~~~c~~~i~~~~~~~~~~~~f 360 (929)
|++.+.. -...++ ++||+.|+--++......|.+.|++|+-.|+.+++.++--
T Consensus 61 Lm~yv~~-~~p~l~-~~NvvsIliSS~FL~M~~Lve~cl~y~~~~~~~Iv~~~~n 113 (317)
T PF11822_consen 61 LMRYVKG-EPPSLT-PSNVVSILISSEFLQMESLVEECLQYCHDHMSEIVASPCN 113 (317)
T ss_pred HHHHhhc-CCCcCC-cCcEEEeEehhhhhccHHHHHHHHHHHHHhHHHHHcCCCC
Confidence 3444443 233456 9999999999999999999999999999999999887643
No 455
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=46.59 E-value=1.9e+02 Score=34.68 Aligned_cols=162 Identities=17% Similarity=0.129 Sum_probs=99.8
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHcCC-------ChHHHHHHHHHHH---HhCCHHHHHHHHHHHHHHccC-CHHH
Q 002375 748 GQALNNLGSIYVECGKLDQAENCYINALDIK-------HTRAHQGLARVYY---LKNELKAAYDEMTKLLEKAQY-SASA 816 (929)
Q Consensus 748 ~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~-------~~~a~~~la~~~~---~~g~~~~A~~~~~~al~~~p~-~~~~ 816 (929)
++...++-..|....+|+.-++..+..-.+. .....+..+.++- +-|+.++|+...-.+++.... .++.
T Consensus 201 ~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vapDm 280 (1226)
T KOG4279|consen 201 PDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAPDM 280 (1226)
T ss_pred HHHHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCCce
Confidence 4566777777888888888877776665552 1122222333333 346788888888888876543 3344
Q ss_pred HHHHh-------------hcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcC------CC
Q 002375 817 FEKRS-------------EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQ-KEVEAVEELSKAIAFK------PD 876 (929)
Q Consensus 817 ~~~lg-------------~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g-~~~eA~~~l~kal~~~------p~ 876 (929)
|...| ..+..+.|+.+|+++.+..|. ..+-.+++.++...| +++...+.-.-.+.++ ..
T Consensus 281 ~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~-~~sGIN~atLL~aaG~~Fens~Elq~IgmkLn~LlgrKG~ 359 (1226)
T KOG4279|consen 281 YCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPL-EYSGINLATLLRAAGEHFENSLELQQIGMKLNSLLGRKGA 359 (1226)
T ss_pred eeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCch-hhccccHHHHHHHhhhhccchHHHHHHHHHHHHHhhccch
Confidence 44433 224568899999999999993 344456777777766 4454444433333332 22
Q ss_pred c---hHHHHHHHHHH---HcCCHHHHHHHHHHHhccCCCC
Q 002375 877 L---QMLHLRAAFYE---SIGDLTSAIRDSQAALCLDPNH 910 (929)
Q Consensus 877 ~---~~~~~la~~~~---~~g~~~~A~~~~~~al~l~P~~ 910 (929)
. ..++-.|..+. -.+|+.+|++.-++..++.|-.
T Consensus 360 leklq~YWdV~~y~~asVLAnd~~kaiqAae~mfKLk~P~ 399 (1226)
T KOG4279|consen 360 LEKLQEYWDVATYFEASVLANDYQKAIQAAEMMFKLKPPV 399 (1226)
T ss_pred HHHHHHHHhHHHhhhhhhhccCHHHHHHHHHHHhccCCce
Confidence 2 12232233322 2589999999999999998754
No 456
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=46.35 E-value=4.2e+02 Score=28.81 Aligned_cols=115 Identities=17% Similarity=0.063 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHhhcCCHHHHHHHHHHHHhcC-------CCCcHHHHHHHHHH
Q 002375 782 AHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLD-------PLRTYPYRYRAAVL 854 (929)
Q Consensus 782 a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~A~~~~~~al~l~-------p~~~~~~~~la~~~ 854 (929)
..+.+|.-|...++++.|.-.|+++.... +.|.+.+.+.++.. ..++..-..++...
T Consensus 127 ~n~YkaLNYm~~nD~~~ArVEfnRan~rQ----------------~~AKe~~~~ei~ka~~e~ds~k~~~N~~~~~ae~s 190 (449)
T COG3014 127 INYYKALNYMLLNDSAKARVEFNRANERQ----------------RRAKEFYYEEVQKAIKEIDSSKHNINMERSRAEVS 190 (449)
T ss_pred HHHHHHhhHHHhcchhhhHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHH
Confidence 45667778888899999999888887652 34444444443321 11222222222211
Q ss_pred Hh-cCCHHHHHHHHHHHHhcCCCch-HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHH
Q 002375 855 MD-DQKEVEAVEELSKAIAFKPDLQ-MLHLRAAFYESIGDLTSAIRDSQAALCLDPNHMETL 914 (929)
Q Consensus 855 ~~-~g~~~eA~~~l~kal~~~p~~~-~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~ 914 (929)
.- ...|.-=...|+.-- +-.++ .-|+.|.++.-.|++.++...+..++-+.|+-....
T Consensus 191 ~~i~n~Y~ny~~~yea~~--~l~npYv~Yl~~lf~a~n~dv~kg~~~~~e~~gi~qd~~~~~ 250 (449)
T COG3014 191 EILNNTYSNYLDKYEAYQ--GLLNPYVSYLSGLFYALNGDVNKGLGYLNEAYGISQDQSPFV 250 (449)
T ss_pred HHHHHHHHHHHHHHHhhc--ccchHHHHHHHHHhcccCccHhHHHHHHHHHhccCchhhHHH
Confidence 11 111111111111110 01112 223557778888899999999999999988844433
No 457
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=45.50 E-value=99 Score=31.32 Aligned_cols=59 Identities=17% Similarity=0.096 Sum_probs=53.5
Q ss_pred HHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch
Q 002375 649 LLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF 707 (929)
Q Consensus 649 ~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~l~p~~ 707 (929)
-+.+.+...+|+...+.-++..|.+......+-.+|.-.|++++|...++-+-++.|++
T Consensus 10 eLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~ 68 (273)
T COG4455 10 ELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD 68 (273)
T ss_pred HHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence 45567888999999999999999999998899999999999999999999999999987
No 458
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=44.35 E-value=4.2e+02 Score=28.16 Aligned_cols=135 Identities=12% Similarity=0.008 Sum_probs=73.1
Q ss_pred CCCChHHH--HHHHHHHHHhcCHHHHHHHHHHHHhc----C--CchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch
Q 002375 636 DPGKSFLR--FRQSLLLLRLNCQKAAMRCLRLARNH----S--SSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF 707 (929)
Q Consensus 636 ~p~~~~~~--~~lg~~~~~~g~~~~A~~~l~~al~~----~--p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~l~p~~ 707 (929)
+|.....| +..+..-......++-++.+.+.++. + ....+++.++|..|.+.++.+.+.+...+.++-.-..
T Consensus 69 n~kt~a~~ikfD~~~~n~l~kkneeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~st 148 (412)
T COG5187 69 NPKTSASVIKFDRGRMNTLLKKNEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMST 148 (412)
T ss_pred CCcccchheehhhHHHHHHHHhhHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhc
Confidence 45444332 34444444445555666666444432 2 1226789999999999999999999888877643222
Q ss_pred ----HH---HHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccC--c-hhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC
Q 002375 708 ----EA---FFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGL--R-KGQALNNLGSIYVECGKLDQAENCYINALDI 777 (929)
Q Consensus 708 ----~a---~~~l~~~l~~~~~~~~~~~~a~~~~~~Al~~~~~~l--~-~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~ 777 (929)
+. ...+|..+.+. ...-+.++.+-..+++.- + ....-...|.......++.+|...+...+..
T Consensus 149 g~KiDv~l~kiRlg~~y~d~-------~vV~e~lE~~~~~iEkGgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~t 221 (412)
T COG5187 149 GLKIDVFLCKIRLGLIYGDR-------KVVEESLEVADDIIEKGGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDILPT 221 (412)
T ss_pred ccchhhHHHHHHHHHhhccH-------HHHHHHHHHHHHHHHhCCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhcc
Confidence 11 12333333332 222223333333333331 1 2233344555566667777777777666654
No 459
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=44.26 E-value=45 Score=27.55 Aligned_cols=22 Identities=23% Similarity=0.270 Sum_probs=12.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 002375 850 RAAVLMDDQKEVEAVEELSKAI 871 (929)
Q Consensus 850 la~~~~~~g~~~eA~~~l~kal 871 (929)
.|.-+-+.|++++|+.+|++++
T Consensus 12 ~AVe~D~~gr~~eAi~~Y~~aI 33 (75)
T cd02682 12 NAVKAEKEGNAEDAITNYKKAI 33 (75)
T ss_pred HHHHHHhcCCHHHHHHHHHHHH
Confidence 3444556666666666655544
No 460
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=44.15 E-value=54 Score=36.77 Aligned_cols=59 Identities=12% Similarity=0.136 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHhcccC----------CHhHHHHHHHHHHHhccHHHHHHHHHHHHh
Q 002375 517 PYKYRAVAKMEEGQIRAAISEIDRIIVFKL----------SVDCLELRAWLFIAADDYESALRDTLALLA 576 (929)
Q Consensus 517 a~~~~a~~~~~~g~~~~A~~~~~~al~~~~----------~~~~~~~~a~~~~~~g~~~eA~~~~~~al~ 576 (929)
+...+.+++.-.|||..|++.++.+- ++. ....++..|.+|+.+++|.+|++.|..++-
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~id-l~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENID-LNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccC-cccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566788899999999999887541 111 223378889999999999999999998874
No 461
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=43.79 E-value=33 Score=28.35 Aligned_cols=17 Identities=24% Similarity=0.364 Sum_probs=11.8
Q ss_pred cCCHHHHHHHHHHHHhc
Q 002375 857 DQKEVEAVEELSKAIAF 873 (929)
Q Consensus 857 ~g~~~eA~~~l~kal~~ 873 (929)
.|+|++|+..|..+++.
T Consensus 19 ~gny~eA~~lY~~ale~ 35 (75)
T cd02680 19 KGNAEEAIELYTEAVEL 35 (75)
T ss_pred hhhHHHHHHHHHHHHHH
Confidence 56777777777777653
No 462
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=43.57 E-value=36 Score=38.13 Aligned_cols=59 Identities=10% Similarity=0.044 Sum_probs=46.5
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhc---------CCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002375 643 RFRQSLLLLRLNCQKAAMRCLRLARNH---------SSSEHERLVYEGWILYDTGHREEALSRAEKSIS 702 (929)
Q Consensus 643 ~~~lg~~~~~~g~~~~A~~~l~~al~~---------~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~ 702 (929)
...+..++.-+|+|..|++.++.. ++ .+-+...++..|.+|+.+++|.+|++.|...+-
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566788899999999988763 22 223356788999999999999999999998874
No 463
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=43.49 E-value=1.6e+02 Score=34.16 Aligned_cols=44 Identities=16% Similarity=0.169 Sum_probs=31.5
Q ss_pred HHHHHHHHHHhc-----CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHh
Q 002375 499 EKIVDLNYASEL-----DPTLSFPYKYRAVAKMEEGQIRAAISEIDRII 542 (929)
Q Consensus 499 ~Ai~~~~~al~l-----~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al 542 (929)
.+++.|.+|+.. +-.....|.++|-.+++.++|.+|+..+..+-
T Consensus 297 ~~~~l~~~AI~sa~~~Y~n~HvYPYty~gg~~yR~~~~~eA~~~Wa~aa 345 (618)
T PF05053_consen 297 TPLELFNEAISSARTYYNNHHVYPYTYLGGYYYRHKRYREALRSWAEAA 345 (618)
T ss_dssp -HHHHHHHHHHHHHHHCTT--SHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhcCCccccceehhhHHHHHHHHHHHHHHHHHHH
Confidence 556666666653 34567889999999999999999998887773
No 464
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=43.29 E-value=28 Score=39.05 Aligned_cols=44 Identities=11% Similarity=0.258 Sum_probs=36.7
Q ss_pred cCChhhHHHHHHHHHhhChHHHHHHHHHHHhhhhhhhcCcchhhhhhc
Q 002375 318 VGDIEDALILIDYGLEERATLLVASCLQVLLRELPSSLYNPKVMKIFC 365 (929)
Q Consensus 318 ~~~~~n~~~~~~~a~~~~~~~L~~~c~~~i~~~~~~~~~~~~f~~L~~ 365 (929)
+. .|||+.++..|.+|..+.|.+.|.+||..++.. ...|+.|+-
T Consensus 185 ~~-~dtvi~tl~~AkKY~VpaLer~CVkflr~~l~~---~naf~~L~q 228 (521)
T KOG2075|consen 185 LA-ADTVITTLYAAKKYLVPALERQCVKFLRKNLMA---DNAFLELFQ 228 (521)
T ss_pred hh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCC---hHHHHHHHH
Confidence 45 899999999999999999999999999987653 356665543
No 465
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=42.56 E-value=3.5e+02 Score=26.73 Aligned_cols=66 Identities=9% Similarity=-0.030 Sum_probs=34.9
Q ss_pred CCChHHHHHHHHHHHH-hcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHhh
Q 002375 637 PGKSFLRFRQSLLLLR-LNCQKAAMRCLRLARNHSSSEHERLVYEGWILYD-----TGHREEALSRAEKSISI 703 (929)
Q Consensus 637 p~~~~~~~~lg~~~~~-~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~-----~g~~~eA~~~~~~al~l 703 (929)
...|+....+|..+.. +.++++|...|..--+-+. .+..-+.+|..+.. .++...|++.+..+-..
T Consensus 31 EK~Pe~C~lLgdYlEgi~knF~~A~kv~K~nCden~-y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~ 102 (248)
T KOG4014|consen 31 EKRPESCQLLGDYLEGIQKNFQAAVKVFKKNCDENS-YPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDA 102 (248)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccC-CcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhcc
Confidence 3455666666665533 3456666666655433222 24444445444332 34567777777766653
No 466
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=40.80 E-value=1.2e+02 Score=25.19 Aligned_cols=31 Identities=6% Similarity=0.142 Sum_probs=23.5
Q ss_pred HHHHHHHhhHHHHhcccHHHHHHHHHHHHhc
Q 002375 418 RMLALHQLGCVMFEREEYKDACYYFEAAADA 448 (929)
Q Consensus 418 ~a~~~~~lG~~~~~~g~y~~A~~~f~~al~~ 448 (929)
.+..+...|.-.=..|+|++|+.+|..+++.
T Consensus 5 ~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~ 35 (77)
T cd02683 5 AAKEVLKRAVELDQEGRFQEALVCYQEGIDL 35 (77)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3445566677777888999999888888875
No 467
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=39.20 E-value=48 Score=22.18 Aligned_cols=29 Identities=28% Similarity=0.366 Sum_probs=22.2
Q ss_pred HHHHhhHHHHhc----ccHHHHHHHHHHHHhcC
Q 002375 421 ALHQLGCVMFER----EEYKDACYYFEAAADAG 449 (929)
Q Consensus 421 ~~~~lG~~~~~~----g~y~~A~~~f~~al~~~ 449 (929)
+.+.+|..|..- .++++|+.+|+++.+.+
T Consensus 3 a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~~g 35 (36)
T smart00671 3 AQYNLGQMYEYGLGVKKDLEKALEYYKKAAELG 35 (36)
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHcc
Confidence 566778777642 48999999999987753
No 468
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=38.35 E-value=63 Score=26.04 Aligned_cols=31 Identities=16% Similarity=0.225 Sum_probs=24.9
Q ss_pred HHHHHHHhhHHHHhcccHHHHHHHHHHHHhc
Q 002375 418 RMLALHQLGCVMFEREEYKDACYYFEAAADA 448 (929)
Q Consensus 418 ~a~~~~~lG~~~~~~g~y~~A~~~f~~al~~ 448 (929)
.+..+...|...-..|+|++|+.+|.++++.
T Consensus 4 ~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~ 34 (69)
T PF04212_consen 4 KAIELIKKAVEADEAGNYEEALELYKEAIEY 34 (69)
T ss_dssp HHHHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3455667777888889999999999998875
No 469
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=37.92 E-value=53 Score=20.93 Aligned_cols=26 Identities=15% Similarity=0.033 Sum_probs=18.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 002375 847 YRYRAAVLMDDQKEVEAVEELSKAIA 872 (929)
Q Consensus 847 ~~~la~~~~~~g~~~eA~~~l~kal~ 872 (929)
|..+-..|.+.|++++|.+.|++..+
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhH
Confidence 55566677777777777777776654
No 470
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=37.71 E-value=1.5e+02 Score=35.85 Aligned_cols=79 Identities=20% Similarity=0.284 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHh--cCCHHHHHHHHHHHHhcCCCchHHH-HHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 002375 845 YPYRYRAAVLMD--DQKEVEAVEELSKAIAFKPDLQMLH-LRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNRAR 921 (929)
Q Consensus 845 ~~~~~la~~~~~--~g~~~eA~~~l~kal~~~p~~~~~~-~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~l~ 921 (929)
....+.+.+++. .++|.+++....-++...|....+. -++.+|...+..+-|++...-....+|++.++.....+++
T Consensus 92 ~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~eif~elk 171 (748)
T KOG4151|consen 92 TLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLKRARKYEALNKLDLAVRDLRIVEKMDPSNVSASEIFEELK 171 (748)
T ss_pred hHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Confidence 334455555554 4478888888887877777765444 4578888888888888887777788888877777666655
Q ss_pred hh
Q 002375 922 DQ 923 (929)
Q Consensus 922 ~~ 923 (929)
..
T Consensus 172 ~l 173 (748)
T KOG4151|consen 172 GL 173 (748)
T ss_pred HH
Confidence 43
No 471
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=36.90 E-value=72 Score=21.80 Aligned_cols=30 Identities=30% Similarity=0.581 Sum_probs=20.3
Q ss_pred HHHHHhh--HHHHhc-----ccHHHHHHHHHHHHhcC
Q 002375 420 LALHQLG--CVMFER-----EEYKDACYYFEAAADAG 449 (929)
Q Consensus 420 ~~~~~lG--~~~~~~-----g~y~~A~~~f~~al~~~ 449 (929)
.+.+.+| ..+..- .++++|+.+|++|.+.+
T Consensus 2 ~A~~~lg~~~~~~~g~~g~~~d~~~A~~~~~~Aa~~g 38 (39)
T PF08238_consen 2 EAQYNLGMYYMYYNGKGGVPKDYEKAFKWYEKAAEQG 38 (39)
T ss_dssp HHHHHHHHHHHHHHTSTSSCHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHhhhhccCCccccccchHHHHHHHHHcc
Confidence 3556677 333322 36899999999998754
No 472
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=36.83 E-value=80 Score=31.53 Aligned_cols=51 Identities=16% Similarity=-0.015 Sum_probs=42.2
Q ss_pred HHHHHHHHHHhcccCCHhHHHHHHHHHHHhccHHHHHHHHHHHHhhcCCch
Q 002375 532 RAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLALESNYM 582 (929)
Q Consensus 532 ~~A~~~~~~al~~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~al~~~p~~~ 582 (929)
+..++..++.+...|+|..+..++.++...|+.++|....+++....|.+.
T Consensus 128 ~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~~~ 178 (193)
T PF11846_consen 128 EAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRLYPADE 178 (193)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcHH
Confidence 445566677777788899999999999999999999999999999999544
No 473
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=36.66 E-value=1e+03 Score=30.57 Aligned_cols=289 Identities=17% Similarity=0.124 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHhcccCCHhHHHHHHHHHHHhc--cHHHHHHHHHHHHhhcCCchhhhccccHHHHHHHHH--------
Q 002375 529 GQIRAAISEIDRIIVFKLSVDCLELRAWLFIAAD--DYESALRDTLALLALESNYMMFHGRVSGDHLVKLLN-------- 598 (929)
Q Consensus 529 g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~g--~~~eA~~~~~~al~~~p~~~~~~~~~~a~~ll~~~~-------- 598 (929)
+....--.....++.....-....-+-..|...+ ..++|+........ .+... .+...+..+.
T Consensus 771 ~kv~~vc~~vr~~l~~~~~~~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~-~~~~~------~ad~al~hll~Lvdvn~l 843 (1265)
T KOG1920|consen 771 NKVNSVCDAVRNALERRAPDKFNLFILTSYVKSNPPEIEEALQKIKELQL-AQVAV------SADEALKHLLFLVDVNEL 843 (1265)
T ss_pred hHHHHHHHHHHHHHhhcCcchhhHHHHHHHHhcCcHHHHHHHHHHHHHHh-cccch------hHHHHHHHHHhhccHHHH
Q ss_pred --HhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHH---HHHHhcCHHHHHHHHHHHHhcCCch
Q 002375 599 --HHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSL---LLLRLNCQKAAMRCLRLARNHSSSE 673 (929)
Q Consensus 599 --~~~~~~~~A~~~l~l~~~~~~~d~~~al~~~~~al~~~p~~~~~~~~lg~---~~~~~g~~~~A~~~l~~al~~~p~~ 673 (929)
.++|-|+.-+..+ ..+.-+.||..-..+.+.-. ..++.=+.+.=++-|..|+..-...
T Consensus 844 fn~ALgtYDl~Lal~-----------------VAq~SqkDPkEyLP~L~el~~m~~~~rkF~ID~~L~ry~~AL~hLs~~ 906 (1265)
T KOG1920|consen 844 FNSALGTYDLDLALL-----------------VAQKSQKDPKEYLPFLNELKKMETLLRKFKIDDYLKRYEDALSHLSEC 906 (1265)
T ss_pred HHhhhcccchHHHHH-----------------HHHHhccChHHHHHHHHHHhhchhhhhheeHHHHHHHHHHHHHHHHHc
Q ss_pred HH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHH
Q 002375 674 HE-RLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALN 752 (929)
Q Consensus 674 ~~-~~~~lg~~~~~~g~~~eA~~~~~~al~l~p~~~a~~~l~~~l~~~~~~~~~~~~a~~~~~~Al~~~~~~l~~~~a~~ 752 (929)
.. .+-..-..-.+.|-|.+|+.+|.--.+ .+......|-+-+....-+.
T Consensus 907 ~~~~~~e~~n~I~kh~Ly~~aL~ly~~~~e------------------------------~~k~i~~~ya~hL~~~~~~~ 956 (1265)
T KOG1920|consen 907 GETYFPECKNYIKKHGLYDEALALYKPDSE------------------------------KQKVIYEAYADHLREELMSD 956 (1265)
T ss_pred CccccHHHHHHHHhcccchhhhheeccCHH------------------------------HHHHHHHHHHHHHHHhcccc
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHcC------------CChHHH---HHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHH
Q 002375 753 NLGSIYVECGKLDQAENCYINALDI------------KHTRAH---QGLARVYYLKNELKAAYDEMTKLLEKAQYSASAF 817 (929)
Q Consensus 753 ~lg~~~~~~g~~~eA~~~~~~al~~------------~~~~a~---~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 817 (929)
.-|.+|...|+.++|+..|+.+... +..... ..|+..+..++++-+|.+........
T Consensus 957 ~Aal~Ye~~GklekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd-------- 1028 (1265)
T KOG1920|consen 957 EAALMYERCGKLEKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLSD-------- 1028 (1265)
T ss_pred HHHHHHHHhccHHHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC--------
Q ss_pred HHHhhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHH-------hcCCCchHHH-----HHHH
Q 002375 818 EKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAI-------AFKPDLQMLH-----LRAA 885 (929)
Q Consensus 818 ~~lg~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal-------~~~p~~~~~~-----~la~ 885 (929)
.++++. +|.+...|++|+.....+- .+.|...... .+..
T Consensus 1029 ---------------~~~av~--------------ll~ka~~~~eAlrva~~~~~~d~iee~l~~al~e~~~~~~~~L~~ 1079 (1265)
T KOG1920|consen 1029 ---------------PEEAVA--------------LLCKAKEWEEALRVASKAKRDDIIEEVLKPALLEAFGEVLEFLED 1079 (1265)
T ss_pred ---------------HHHHHH--------------HHhhHhHHHHHHHHHHhcccchHHHHHHhHHHHHHHHHHHHHHHH
Q ss_pred HHHHcCCHHHHHHHHHHHhccCC
Q 002375 886 FYESIGDLTSAIRDSQAALCLDP 908 (929)
Q Consensus 886 ~~~~~g~~~~A~~~~~~al~l~P 908 (929)
.-..-+++.+=+...++--+.+|
T Consensus 1080 ~k~~f~~yk~RLl~vRe~k~~~~ 1102 (1265)
T KOG1920|consen 1080 VKEQFVKYKKRLLVVRENKEKRP 1102 (1265)
T ss_pred HHHHHHHHHHHHHHHHHhhhhch
No 474
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=36.27 E-value=72 Score=32.81 Aligned_cols=43 Identities=14% Similarity=0.017 Sum_probs=31.4
Q ss_pred HHHHHHH---------HcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHhhhh
Q 002375 882 LRAAFYE---------SIGDLTSAIRDSQAALCLDPNHMETLDLYNRARDQAS 925 (929)
Q Consensus 882 ~la~~~~---------~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~l~~~~~ 925 (929)
..|..+. ..++...|+.++++|++++|+- .+...+++|.+...
T Consensus 174 ~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~-GVK~~i~~l~~~lr 225 (230)
T PHA02537 174 AAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKC-GVKKDIERLERRLK 225 (230)
T ss_pred HHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCC-ChHHHHHHHHHHHh
Confidence 4477773 4567889999999999999874 45556666665543
No 475
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=36.14 E-value=48 Score=27.52 Aligned_cols=16 Identities=25% Similarity=0.131 Sum_probs=10.5
Q ss_pred cCCHHHHHHHHHHHHh
Q 002375 857 DQKEVEAVEELSKAIA 872 (929)
Q Consensus 857 ~g~~~eA~~~l~kal~ 872 (929)
.|+|++|+.+|..+++
T Consensus 19 ~g~y~eA~~~Y~~aie 34 (76)
T cd02681 19 EGRYSEAVFYYKEAAQ 34 (76)
T ss_pred ccCHHHHHHHHHHHHH
Confidence 6677776666666654
No 476
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=35.89 E-value=5.2e+02 Score=26.80 Aligned_cols=42 Identities=12% Similarity=0.158 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhccch--HHHHHHHHHH
Q 002375 676 RLVYEGWILYDTGHREEALSRAEKSISIERTF--EAFFLKAYIL 717 (929)
Q Consensus 676 ~~~~lg~~~~~~g~~~eA~~~~~~al~l~p~~--~a~~~l~~~l 717 (929)
-+..++.+..+.|+|++.+.++++++..+|+. +-...+..++
T Consensus 3 ~li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvay 46 (236)
T PF00244_consen 3 ELIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAY 46 (236)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHH
Confidence 35667888888888888888888888887755 4444444443
No 477
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=35.88 E-value=3e+02 Score=29.65 Aligned_cols=94 Identities=17% Similarity=0.051 Sum_probs=61.6
Q ss_pred HHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCC--------CChHHHHHHHHHHHHhcCHHHHHH
Q 002375 590 GDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDP--------GKSFLRFRQSLLLLRLNCQKAAMR 661 (929)
Q Consensus 590 a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~d~~~al~~~~~al~~~p--------~~~~~~~~lg~~~~~~g~~~~A~~ 661 (929)
....++.+|...++|..|-..+ .++..+. .....+..+|.+|+..++..+|..
T Consensus 105 irl~LAsiYE~Eq~~~~aaq~L-------------------~~I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~ 165 (399)
T KOG1497|consen 105 IRLHLASIYEKEQNWRDAAQVL-------------------VGIPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEA 165 (399)
T ss_pred HHHHHHHHHHHhhhHHHHHHHH-------------------hccCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 3445788888888888883333 1111111 123467889999999999999999
Q ss_pred HHHHHH--hcCCchHHHHHH----HHHHHHHcCCHHHHHHHHHHHHh
Q 002375 662 CLRLAR--NHSSSEHERLVY----EGWILYDTGHREEALSRAEKSIS 702 (929)
Q Consensus 662 ~l~~al--~~~p~~~~~~~~----lg~~~~~~g~~~eA~~~~~~al~ 702 (929)
+..++- ..+..+...... .|+++-..+++-||...|-+...
T Consensus 166 ~inRaSil~a~~~Ne~Lqie~kvc~ARvlD~krkFlEAAqrYyels~ 212 (399)
T KOG1497|consen 166 YINRASILQAESSNEQLQIEYKVCYARVLDYKRKFLEAAQRYYELSQ 212 (399)
T ss_pred HHHHHHHhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888873 333455544433 46666677888888877766554
No 478
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=35.47 E-value=70 Score=26.56 Aligned_cols=31 Identities=19% Similarity=0.415 Sum_probs=25.2
Q ss_pred HHHHHHHhhHHHHhcccHHHHHHHHHHHHhc
Q 002375 418 RMLALHQLGCVMFEREEYKDACYYFEAAADA 448 (929)
Q Consensus 418 ~a~~~~~lG~~~~~~g~y~~A~~~f~~al~~ 448 (929)
.+..+...+.-.=..|+|++|+.+|..+++.
T Consensus 5 ~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~ 35 (76)
T cd02681 5 DAVQFARLAVQRDQEGRYSEAVFYYKEAAQL 35 (76)
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4555667777788889999999999999875
No 479
>KOG3342 consensus Signal peptidase I [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.54 E-value=26 Score=32.76 Aligned_cols=18 Identities=33% Similarity=0.412 Sum_probs=15.5
Q ss_pred CC-EEEEEcCeEEEe-hhHH
Q 002375 218 DS-VTFCVRDKEISF-VRNK 235 (929)
Q Consensus 218 ~~-v~~~v~~~~~~~-hr~i 235 (929)
.+ |+|.|+|++||+ ||+|
T Consensus 81 GdivVf~vegR~IPiVHRvi 100 (180)
T KOG3342|consen 81 GDIVVFKVEGREIPIVHRVI 100 (180)
T ss_pred ccEEEEEECCccCchhHHHH
Confidence 45 999999999985 8887
No 480
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=34.37 E-value=2e+02 Score=23.66 Aligned_cols=32 Identities=16% Similarity=0.157 Sum_probs=23.7
Q ss_pred HHHHHHHHhhHHHHhcccHHHHHHHHHHHHhc
Q 002375 417 QRMLALHQLGCVMFEREEYKDACYYFEAAADA 448 (929)
Q Consensus 417 ~~a~~~~~lG~~~~~~g~y~~A~~~f~~al~~ 448 (929)
+.+..+...|...-..|++++|+.+|..+++.
T Consensus 6 ~~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~ 37 (77)
T smart00745 6 SKAKELISKALKADEAGDYEEALELYKKAIEY 37 (77)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34445556667777788999999999888875
No 481
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=34.29 E-value=3.5e+02 Score=28.58 Aligned_cols=124 Identities=11% Similarity=-0.045 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHhh------------cCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhc--CCHHHH
Q 002375 798 AAYDEMTKLLEKAQYSASAFEKRSE------------YSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDD--QKEVEA 863 (929)
Q Consensus 798 ~A~~~~~~al~~~p~~~~~~~~lg~------------~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~--g~~~eA 863 (929)
.|++.-...+..+|....+|..+-. ..=.+.-+..+..+++-+|.+-.+|..+-.++... .++..-
T Consensus 50 ~aLklt~elid~npe~ytiwnyr~~I~~h~~~~sedk~~~ldneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~~rE 129 (328)
T COG5536 50 RALKLTQELIDKNPEFYTIWNYRFSILKHVQMVSEDKEHLLDNELDFLDEALKDNPKNYQIWHHRQWMLELFPKPSWGRE 129 (328)
T ss_pred HHHHHhHHHHhhCHHHHHHHhhHHHHHhhhhhhcccchhhhhcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCCcccchh
Confidence 5566666666666665555544330 01125566778888889999999999888877665 567777
Q ss_pred HHHHHHHHhcCCCc-hHHHHHHHHH------HHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 002375 864 VEELSKAIAFKPDL-QMLHLRAAFY------ESIGDLTSAIRDSQAALCLDPNHMETLDLYNRAR 921 (929)
Q Consensus 864 ~~~l~kal~~~p~~-~~~~~la~~~------~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~l~ 921 (929)
....++.++.++.+ ..++.+-.+. ..-.++..-.++-..++.-|+.|..||..+-.+.
T Consensus 130 l~itkklld~DsrNyH~W~YR~~vl~~ie~~~N~S~~k~e~eytt~~I~tdi~N~SaW~~r~~~~ 194 (328)
T COG5536 130 LFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSDLKHELEYTTSLIETDIYNNSAWHHRYIWI 194 (328)
T ss_pred HHHHHHHhcccccccceeeeEeeeeecchhhccchhHHHHHHhHHHHHhhCCCChHHHHHHHHHH
Confidence 77888888888866 4444332222 2223344445566677888999999998874443
No 482
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.37 E-value=1e+03 Score=29.79 Aligned_cols=114 Identities=11% Similarity=0.030 Sum_probs=59.6
Q ss_pred HHHHHHHhhHHHHhcccHHHHHHHHHHHHhcCc-cccHHHHHHHHHHhchHHHHHHHHHhhhcCCCcchhhhHHHHHhhh
Q 002375 418 RMLALHQLGCVMFEREEYKDACYYFEAAADAGH-IYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNL 496 (929)
Q Consensus 418 ~a~~~~~lG~~~~~~g~y~~A~~~f~~al~~~~-~~~~a~la~~~~~~g~a~~a~~~~~~l~~~~~~~~~~~~~~~l~~~ 496 (929)
+..-|..|+..|..+|+.++|++.+.+...... .... ...........++ .+..+..+..|-+.-..+-..
T Consensus 503 k~~~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~-----~~~~~e~ii~YL~---~l~~~~~~Li~~y~~wvl~~~ 574 (877)
T KOG2063|consen 503 KSKKYRELIELYATKGMHEKALQLLRDLVDEDSDTDSF-----QLDGLEKIIEYLK---KLGAENLDLILEYADWVLNKN 574 (877)
T ss_pred hcccHHHHHHHHHhccchHHHHHHHHHHhccccccccc-----hhhhHHHHHHHHH---HhcccchhHHHHHhhhhhccC
Confidence 445578899999999999999999999887432 1111 0000111111111 111221233343333333333
Q ss_pred hhHHHHHHHH-----HHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccC
Q 002375 497 GREKIVDLNY-----ASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL 546 (929)
Q Consensus 497 ~~~Ai~~~~~-----al~l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~ 546 (929)
...+++.|.. +-.++|+ .-.-+......+-++.+++.++....
T Consensus 575 p~~gi~Ift~~~~~~~~sis~~-------~Vl~~l~~~~~~l~I~YLE~li~~~~ 622 (877)
T KOG2063|consen 575 PEAGIQIFTSEDKQEAESISRD-------DVLNYLKSKEPKLLIPYLEHLISDNR 622 (877)
T ss_pred chhheeeeeccChhhhccCCHH-------HHHHHhhhhCcchhHHHHHHHhHhcc
Confidence 3345544443 1111111 11235677788889999999885554
No 483
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=33.36 E-value=6.6e+02 Score=27.29 Aligned_cols=97 Identities=13% Similarity=0.219 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch----HH---HHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhcc--
Q 002375 674 HERLVYEGWILYDTGHREEALSRAEKSISIERTF----EA---FFLKAYILADTNLDPESSTYVIQLLEEALRCPSDG-- 744 (929)
Q Consensus 674 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~l~p~~----~a---~~~l~~~l~~~~~~~~~~~~a~~~~~~Al~~~~~~-- 744 (929)
.+++...|..|.+.|+.+.|.+.+.+..+..-.. +. ...+|..+.+. .-.-...++|-..+++.
T Consensus 104 ~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~-------~lV~~~iekak~liE~GgD 176 (393)
T KOG0687|consen 104 REAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDH-------DLVTESIEKAKSLIEEGGD 176 (393)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccH-------HHHHHHHHHHHHHHHhCCC
Confidence 6778888888888888888888877766533211 11 12223332222 22223444555544444
Q ss_pred Cc-hhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC
Q 002375 745 LR-KGQALNNLGSIYVECGKLDQAENCYINALDI 777 (929)
Q Consensus 745 l~-~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~ 777 (929)
++ ....-...|.......++.+|...|-.++..
T Consensus 177 WeRrNRlKvY~Gly~msvR~Fk~Aa~Lfld~vsT 210 (393)
T KOG0687|consen 177 WERRNRLKVYQGLYCMSVRNFKEAADLFLDSVST 210 (393)
T ss_pred hhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHccc
Confidence 11 2333344555566667788888888777665
No 484
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=32.21 E-value=2.4e+02 Score=26.10 Aligned_cols=113 Identities=17% Similarity=0.093 Sum_probs=54.7
Q ss_pred HHHhCCHHHHHHHHHHHHHHccCCHHHHHHHhh---cCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHH
Q 002375 790 YYLKNELKAAYDEMTKLLEKAQYSASAFEKRSE---YSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEE 866 (929)
Q Consensus 790 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~---~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~ 866 (929)
+...+.....+.+++.++..++.+...+..+.. .-+..+.+..++. .+ ...-....+.+..+.+-+++++-.
T Consensus 17 ~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~~~~ll~~l~~----~~-~~yd~~~~~~~c~~~~l~~~~~~l 91 (140)
T smart00299 17 FEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYDPQKEIERLDN----KS-NHYDIEKVGKLCEKAKLYEEAVEL 91 (140)
T ss_pred HHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHCHHHHHHHHHh----cc-ccCCHHHHHHHHHHcCcHHHHHHH
Confidence 344567778888888777776655555444441 1233444444442 11 111122233444555556666666
Q ss_pred HHHHHhcCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHH
Q 002375 867 LSKAIAFKPDLQMLHLRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYN 918 (929)
Q Consensus 867 l~kal~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~ 918 (929)
+.+. .....+. -.+....++++.|++++.+ +++++.|....
T Consensus 92 ~~k~----~~~~~Al--~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~ 132 (140)
T smart00299 92 YKKD----GNFKDAI--VTLIEHLGNYEKAIEYFVK-----QNNPELWAEVL 132 (140)
T ss_pred HHhh----cCHHHHH--HHHHHcccCHHHHHHHHHh-----CCCHHHHHHHH
Confidence 5543 1111111 1111122677777777765 34566665444
No 485
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=32.02 E-value=3.1e+02 Score=31.95 Aligned_cols=77 Identities=19% Similarity=0.239 Sum_probs=45.9
Q ss_pred HHHHHHHHhCC---HHHHHHHHHHHHHHccCCHHHHHHHhhcCCHHHHHHHHHHHHhc-----CCCCcHHHHHHHHHHHh
Q 002375 785 GLARVYYLKNE---LKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQL-----DPLRTYPYRYRAAVLMD 856 (929)
Q Consensus 785 ~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~A~~~~~~al~l-----~p~~~~~~~~la~~~~~ 856 (929)
.|-.+++..|. |..|+-.+-.+-++.|.. +...++..|.+|+.. +....++|.++|-.+++
T Consensus 262 ~lLw~lyd~ghl~~YPmALg~LadLeEi~pt~-----------~r~~~~~l~~~AI~sa~~~Y~n~HvYPYty~gg~~yR 330 (618)
T PF05053_consen 262 DLLWLLYDMGHLARYPMALGNLADLEEIDPTP-----------GRPTPLELFNEAISSARTYYNNHHVYPYTYLGGYYYR 330 (618)
T ss_dssp HHHHHHHHTTTTTT-HHHHHHHHHHHHHS--T-----------TS--HHHHHHHHHHHHHHHCTT--SHHHHHHHHHHHH
T ss_pred HHHHHHHhcCchhhCchhhhhhHhHHhhccCC-----------CCCCHHHHHHHHHHHHHHHhcCCccccceehhhHHHH
Confidence 34444444443 556666666666655542 123344555555542 34678899999999999
Q ss_pred cCCHHHHHHHHHHHHh
Q 002375 857 DQKEVEAVEELSKAIA 872 (929)
Q Consensus 857 ~g~~~eA~~~l~kal~ 872 (929)
.+++.+|+..+..+-.
T Consensus 331 ~~~~~eA~~~Wa~aa~ 346 (618)
T PF05053_consen 331 HKRYREALRSWAEAAD 346 (618)
T ss_dssp TT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999988754
No 486
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=31.88 E-value=6.1e+02 Score=26.45 Aligned_cols=42 Identities=19% Similarity=0.106 Sum_probs=27.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh-cc-ch--HHHHHHHHHHH
Q 002375 677 LVYEGWILYDTGHREEALSRAEKSISI-ER-TF--EAFFLKAYILA 718 (929)
Q Consensus 677 ~~~lg~~~~~~g~~~eA~~~~~~al~l-~p-~~--~a~~~l~~~l~ 718 (929)
+..++.+..+.++|++.+.+..++++. +| .. +-...+..+|.
T Consensus 4 ~v~~Aklaeq~eRyddm~~~mk~~~~~~~~~eLt~EERnLLSvayK 49 (244)
T smart00101 4 NVYMAKLAEQAERYEEMVEFMEKVAKTVDSEELTVEERNLLSVAYK 49 (244)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHh
Confidence 455677777888888888888887776 43 22 44444555443
No 487
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=31.13 E-value=95 Score=20.14 Aligned_cols=26 Identities=19% Similarity=0.192 Sum_probs=17.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 002375 847 YRYRAAVLMDDQKEVEAVEELSKAIA 872 (929)
Q Consensus 847 ~~~la~~~~~~g~~~eA~~~l~kal~ 872 (929)
|..+-..|.+.|++++|.+.|.+..+
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45555667777777777777776654
No 488
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=30.55 E-value=2.3e+02 Score=26.75 Aligned_cols=53 Identities=21% Similarity=0.060 Sum_probs=38.1
Q ss_pred CHhHHHHHHHHHHHhccHHHHHHHHHHHHhhcCCchhhhccccHHHHHHHHHHhhcccc
Q 002375 547 SVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWS 605 (929)
Q Consensus 547 ~~~~~~~~a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~ 605 (929)
..+....++.-.+..|+|.-|....+.++..+|++. .+..+.+.++...+.-.
T Consensus 69 G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~------~ar~l~A~al~~lg~~~ 121 (141)
T PF14863_consen 69 GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNE------EARQLKADALEQLGYQS 121 (141)
T ss_dssp CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-H------HHHHHHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcH------HHHHHHHHHHHHHHHhc
Confidence 455566677777889999999999999999999998 66777777776655543
No 489
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=29.96 E-value=1.3e+03 Score=29.70 Aligned_cols=193 Identities=16% Similarity=0.117 Sum_probs=0.0
Q ss_pred ChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhhccchH
Q 002375 639 KSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGH----------REEALSRAEKSISIERTFE 708 (929)
Q Consensus 639 ~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~----------~~eA~~~~~~al~l~p~~~ 708 (929)
++...+.+|.+|...|+..+|+.+|.+|..-..... ++..+..-..-.+. ...|+.+|.+++++-..+
T Consensus 919 k~v~rfmlg~~yl~tge~~kAl~cF~~a~Sg~ge~~-aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~h- 996 (1480)
T KOG4521|consen 919 KPVIRFMLGIAYLGTGEPVKALNCFQSALSGFGEGN-ALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEH- 996 (1480)
T ss_pred HHHHHHhhheeeecCCchHHHHHHHHHHhhccccHH-HHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHh-
Q ss_pred HHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhcc-CchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC-CChHHHHHH
Q 002375 709 AFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDG-LRKGQALNNLGSIYVECGKLDQAENCYINALDI-KHTRAHQGL 786 (929)
Q Consensus 709 a~~~l~~~l~~~~~~~~~~~~a~~~~~~Al~~~~~~-l~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~-~~~~a~~~l 786 (929)
+..+.+.+.-..|++..... ...+..+..+=+-....|.+-+|....-+--.. ..-+.+..+
T Consensus 997 ----------------n~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npdserrrdcLRql 1060 (1480)
T KOG4521|consen 997 ----------------NHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPDSERRRDCLRQL 1060 (1480)
T ss_pred ----------------ccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCcHHHHHHHHHHH
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHhhcCCHHHHHH-HHHHHHhcCC-CCcHHHHHHHHHHHhcCCHHHHH
Q 002375 787 ARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKN-DLNMATQLDP-LRTYPYRYRAAVLMDDQKEVEAV 864 (929)
Q Consensus 787 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~A~~-~~~~al~l~p-~~~~~~~~la~~~~~~g~~~eA~ 864 (929)
..+++..|+.+ +....-..|-.++-.. .++.+-+..| .....|..|=..+...++|.+|-
T Consensus 1061 vivLfecg~l~------------------~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~Rkaa 1122 (1480)
T KOG4521|consen 1061 VIVLFECGELE------------------ALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAA 1122 (1480)
T ss_pred HHHHHhccchH------------------HHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHH
Q ss_pred HHH
Q 002375 865 EEL 867 (929)
Q Consensus 865 ~~l 867 (929)
.+.
T Consensus 1123 tvM 1125 (1480)
T KOG4521|consen 1123 TVM 1125 (1480)
T ss_pred HHH
No 490
>PF10932 DUF2783: Protein of unknown function (DUF2783); InterPro: IPR021233 This is a bacterial family of uncharacterised protein.
Probab=29.52 E-value=1.5e+02 Score=23.16 Aligned_cols=49 Identities=22% Similarity=0.376 Sum_probs=37.0
Q ss_pred CchhhHHHHHHHHHHhhhccccchhhHHHHHHHHh--hcCChhHHHHHHHHHHhh
Q 002375 82 KPIHCVKSLADLYRRFETCLESDKSMLFIEQYAYL--CGLGDAKLLRRCLRSARQ 134 (929)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 134 (929)
.|=|+-+.|-..|+.|.. ++|...--+.-++ -=+||+-.||++++.|++
T Consensus 9 ~pD~fY~~Li~aH~gLs~----e~S~~lnArLiLlLANhIGD~~vL~eAi~~Ar~ 59 (60)
T PF10932_consen 9 DPDDFYEALIEAHRGLSD----EQSAALNARLILLLANHIGDRAVLREAIAAARR 59 (60)
T ss_pred ChhHHHHHHHHHHhCCCH----HHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHhc
Confidence 478999999999998864 4555444443333 459999999999999985
No 491
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=29.48 E-value=2.4e+02 Score=23.15 Aligned_cols=31 Identities=13% Similarity=0.175 Sum_probs=24.0
Q ss_pred HHHHHHHhhHHHHhcccHHHHHHHHHHHHhc
Q 002375 418 RMLALHQLGCVMFEREEYKDACYYFEAAADA 448 (929)
Q Consensus 418 ~a~~~~~lG~~~~~~g~y~~A~~~f~~al~~ 448 (929)
.+..+...|.-.-..|+|++|+..|.++++.
T Consensus 5 ~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~ 35 (75)
T cd02678 5 KAIELVKKAIEEDNAGNYEEALRLYQHALEY 35 (75)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3455666777777889999999999988875
No 492
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=29.13 E-value=90 Score=26.15 Aligned_cols=16 Identities=13% Similarity=0.119 Sum_probs=9.0
Q ss_pred cCCHHHHHHHHHHHHh
Q 002375 857 DQKEVEAVEELSKAIA 872 (929)
Q Consensus 857 ~g~~~eA~~~l~kal~ 872 (929)
.|+.++|+..|++++.
T Consensus 21 ~g~~e~Al~~Y~~gi~ 36 (79)
T cd02679 21 WGDKEQALAHYRKGLR 36 (79)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 4555666666655543
No 493
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=28.47 E-value=1.3e+02 Score=19.62 Aligned_cols=27 Identities=7% Similarity=0.005 Sum_probs=18.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 002375 846 PYRYRAAVLMDDQKEVEAVEELSKAIA 872 (929)
Q Consensus 846 ~~~~la~~~~~~g~~~eA~~~l~kal~ 872 (929)
.|..+..++.+.|+++.|...|+...+
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 455666677777777777777776654
No 494
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=28.44 E-value=1e+02 Score=28.23 Aligned_cols=37 Identities=24% Similarity=0.281 Sum_probs=21.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHH
Q 002375 883 RAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNR 919 (929)
Q Consensus 883 la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~ 919 (929)
+|..+...|++++|..+|-+|+.+.|+-.+.+..+.+
T Consensus 69 lGE~L~~~G~~~~aa~hf~nAl~V~~qP~~LL~i~q~ 105 (121)
T PF02064_consen 69 LGEQLLAQGDYEEAAEHFYNALKVCPQPAELLQIYQK 105 (121)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHTSSSHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 4666666666666666666666666665555555443
No 495
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.21 E-value=1.2e+03 Score=28.77 Aligned_cols=88 Identities=11% Similarity=-0.028 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHhcccCCHhHHHHHHHHHHHhccHHHHHHHHHHHHhhcCCchhhhccccHHHHHH
Q 002375 516 FPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVK 595 (929)
Q Consensus 516 ~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~a~~ll~ 595 (929)
......|.-++..|++++|...|-+.+..-..+... .-+.......+-..+++.+.+..-.+. +--.++-
T Consensus 369 ~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~Vi----~kfLdaq~IknLt~YLe~L~~~gla~~------dhttlLL 438 (933)
T KOG2114|consen 369 EIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSEVI----KKFLDAQRIKNLTSYLEALHKKGLANS------DHTTLLL 438 (933)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHHHH----HHhcCHHHHHHHHHHHHHHHHcccccc------hhHHHHH
Confidence 345566888899999999999999888544322221 111222333333344444443332222 2233455
Q ss_pred HHHHhhcccchHHHHHHh
Q 002375 596 LLNHHVRSWSPADCWIKL 613 (929)
Q Consensus 596 ~~~~~~~~~~~A~~~l~l 613 (929)
.+|..+++.++-.++++.
T Consensus 439 ncYiKlkd~~kL~efI~~ 456 (933)
T KOG2114|consen 439 NCYIKLKDVEKLTEFISK 456 (933)
T ss_pred HHHHHhcchHHHHHHHhc
Confidence 666666666655555533
No 496
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=28.08 E-value=1.2e+02 Score=24.42 Aligned_cols=26 Identities=23% Similarity=0.271 Sum_probs=16.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHc
Q 002375 751 LNNLGSIYVECGKLDQAENCYINALD 776 (929)
Q Consensus 751 ~~~lg~~~~~~g~~~eA~~~~~~al~ 776 (929)
+...|.-.-..|++++|+.+|.+++.
T Consensus 8 ~~~~Av~~D~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 8 LIKKAVEADEAGNYEEALELYKEAIE 33 (69)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44455555666777777777666554
No 497
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=28.06 E-value=1.2e+03 Score=28.71 Aligned_cols=206 Identities=8% Similarity=-0.115 Sum_probs=107.4
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHH-------HHhCCHHHHHHHHHHHhcccC--------CHhHHHHHHHHHHHhcc
Q 002375 499 EKIVDLNYASELDPTLSFPYKYRAVAK-------MEEGQIRAAISEIDRIIVFKL--------SVDCLELRAWLFIAADD 563 (929)
Q Consensus 499 ~Ai~~~~~al~l~P~~~~a~~~~a~~~-------~~~g~~~~A~~~~~~al~~~~--------~~~~~~~~a~~~~~~g~ 563 (929)
+....|++++. |-+.+..|...+... ...++++.-...|.+++..-. ....+...-..|+..-.
T Consensus 168 ~v~~~~ekal~-dy~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~ 246 (881)
T KOG0128|consen 168 EVEELFEKALG-DYNSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVE 246 (881)
T ss_pred HHHHHHHHHhc-ccccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHH
Confidence 55666777764 334444554444433 344567777778888774322 01113333334444444
Q ss_pred HHHHHHHHHHHHhhcCCchhhhccccHHHHHH--HH-HHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCCh
Q 002375 564 YESALRDTLALLALESNYMMFHGRVSGDHLVK--LL-NHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKS 640 (929)
Q Consensus 564 ~~eA~~~~~~al~~~p~~~~~~~~~~a~~ll~--~~-~~~~~~~~~A~~~l~l~~~~~~~d~~~al~~~~~al~~~p~~~ 640 (929)
.+.-+..+...+... -+....+ ..+.... .. ......++.|..-+ ...+..+.+.+...|..-
T Consensus 247 ~~qv~a~~~~el~~~-~D~~~~~--~~~~~~sk~h~~~~~~~~~~~a~~~l-----------~~~~~~~e~~~q~~~~~~ 312 (881)
T KOG0128|consen 247 QRQVIALFVRELKQP-LDEDTRG--WDLSEQSKAHVYDVETKKLDDALKNL-----------AKILFKFERLVQKEPIKD 312 (881)
T ss_pred HHHHHHHHHHHHhcc-chhhhhH--HHHHHHHhcchHHHHhccHHHHHHHH-----------HHHHHHHHHHhhhhHHHH
Confidence 456666666666543 2221110 0111011 00 01111222221111 001233345555556556
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHH-HHcCCHHHHHHHHHHHHhhccch-HHHHHHHHHHH
Q 002375 641 FLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWIL-YDTGHREEALSRAEKSISIERTF-EAFFLKAYILA 718 (929)
Q Consensus 641 ~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~-~~~g~~~eA~~~~~~al~l~p~~-~a~~~l~~~l~ 718 (929)
..|...-..-...|++..-...+++++...+.+...|...|... ..++-.+.+...+-++++..|-. ..|-....++.
T Consensus 313 q~~~~yidfe~~~G~p~ri~l~~eR~~~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~cp~tgdL~~rallAle 392 (881)
T KOG0128|consen 313 QEWMSYIDFEKKSGDPVRIQLIEERAVAEMVLDRALWIGYGVYLDTELKVPQRGVSVHPRAVRSCPWTGDLWKRALLALE 392 (881)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHhccccHHHHhhhhhhcccccccccccccccchhhcCCchHHHHHHHHHHHHH
Confidence 66666666777778888888888888887777788887776554 33455566677777777777766 44443333333
Q ss_pred h
Q 002375 719 D 719 (929)
Q Consensus 719 ~ 719 (929)
+
T Consensus 393 R 393 (881)
T KOG0128|consen 393 R 393 (881)
T ss_pred h
Confidence 3
No 498
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=28.04 E-value=1.1e+02 Score=25.35 Aligned_cols=32 Identities=22% Similarity=0.324 Sum_probs=24.6
Q ss_pred HHHHHHHHhhHHHHhcccHHHHHHHHHHHHhc
Q 002375 417 QRMLALHQLGCVMFEREEYKDACYYFEAAADA 448 (929)
Q Consensus 417 ~~a~~~~~lG~~~~~~g~y~~A~~~f~~al~~ 448 (929)
.++..+...|.-.-..|+|++|..+|..+++.
T Consensus 4 ~~A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~ 35 (75)
T cd02677 4 EQAAELIRLALEKEEEGDYEAAFEFYRAGVDL 35 (75)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 34555666677777779999999999998875
No 499
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=27.93 E-value=2e+02 Score=26.30 Aligned_cols=65 Identities=18% Similarity=0.239 Sum_probs=46.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc----------------hHHHHHHHHHHHcCCHHHHHHHHHH----Hhcc
Q 002375 847 YRYRAAVLMDDQKEVEAVEELSKAIAFKPDL----------------QMLHLRAAFYESIGDLTSAIRDSQA----ALCL 906 (929)
Q Consensus 847 ~~~la~~~~~~g~~~eA~~~l~kal~~~p~~----------------~~~~~la~~~~~~g~~~~A~~~~~~----al~l 906 (929)
+..+|...++.+++-.++-.|++|+.+..+. ..-+++|.++..+||.+-.+++++- ++.+
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltL 83 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTL 83 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHh
Confidence 4567788888888888888888887542111 1234789999999999999999864 4556
Q ss_pred CCCCH
Q 002375 907 DPNHM 911 (929)
Q Consensus 907 ~P~~~ 911 (929)
-|+-+
T Consensus 84 iPQCp 88 (140)
T PF10952_consen 84 IPQCP 88 (140)
T ss_pred ccCCC
Confidence 66543
No 500
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=27.54 E-value=5.2e+02 Score=34.09 Aligned_cols=79 Identities=19% Similarity=0.132 Sum_probs=58.5
Q ss_pred HHHHHHHhhchhccC------ch----hHHHHHHHHHHHHcC--------------------CHHHHHHHHHHHHcC---
Q 002375 731 IQLLEEALRCPSDGL------RK----GQALNNLGSIYVECG--------------------KLDQAENCYINALDI--- 777 (929)
Q Consensus 731 ~~~~~~Al~~~~~~l------~~----~~a~~~lg~~~~~~g--------------------~~~eA~~~~~~al~~--- 777 (929)
...+++++..|.++. .| .++...++..+..+. .-.++.+...+++..
T Consensus 358 ~~~~~~~l~~Y~~~~~~~~~~~p~lv~~E~~lr~~~~l~~~~~~~~l~~iV~~~~~~~~~~~~~~eI~~~l~~~~~~~l~ 437 (1185)
T PF08626_consen 358 PDLYEKALSLYSRSTNDTSEYVPQLVYSEACLRFARFLVAQHLSDNLDHIVKRPLTPTPNISSRSEIAEFLFKAFPLQLK 437 (1185)
T ss_pred hHHHHHHHHHHHHhhccccccCcchHHHHHHHHHHHHHHHhhcccchhhhhccccccccCCCCHHHHHHHHHHhhhhhhh
Confidence 446788888888875 22 367777788777777 777888888888766
Q ss_pred -----CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 002375 778 -----KHTRAHQGLARVYYLKNELKAAYDEMTKLLEK 809 (929)
Q Consensus 778 -----~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~ 809 (929)
+....+..+|.+|...|-..++.-.++.++..
T Consensus 438 ~l~~~dqi~i~~~lA~vy~~lG~~RK~AFvlR~l~~~ 474 (1185)
T PF08626_consen 438 DLSVEDQIRIYSGLASVYGSLGFHRKKAFVLRELAVQ 474 (1185)
T ss_pred hCCHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 12358889999999999988777777766644
Done!