Your job contains 1 sequence.
>002377
MRENYEAIILEDHAFSEQHNVEYALWQLHYRRIEELRAHYSAAVSSAGSNTSQATKVPLR
SDRVTKIRQQFKTFLSEATGFYHELILKIRAKYGLPLGNFSEDSENRIIMDKDGKKSSEV
KKGLVSCHRCLIYLGDLARYKGLYGEGDSKSREYAAASSYYLQAASLWPSSGNPHHQLAI
LASYSSDELVAVYRYFRSLAVDSPFSTARDNLIVAFEKNRQSYSQMSGDVKSSTAKEAGR
LTGKGRGKVEVKLASKDADMETSAVKESVSGVQEKLKAFCTRFVRLNGILFTRTSLETFA
EVLALVSSGLCELLSSGPEEELNFGSDANENALFIVRLVSILIFTVHNLKKENENQTYAE
IVQRAVLLQNAFTAVFELMGHIIERCMQLSDPSSSYLLPGVLVFVEWLACYPDIASGSDA
DERQATVRSNFWNQCISFLNKILSLGPMSVADDEDLTCFFNMSRYDEAETENRLALWEDI
ELRGFLPLLPAQTILDFSRKISFGGDGNKERKDRVKRIFAAGKALANVIMVDQKPVCFDS
KVKKFVIGTEPLDDITFTSSDVSKTNDLILENQAEKAMNLGVVQAPQLYMDGEEEDEVIV
FKPAVTEKRADVVGSTWMYYDGFTPGHNAAVGDLQFYAGSVSTSQDNLRQQSTYDSSLPL
PVSVGNILPQHLQSVQPHAPKQLMEEEVSLANSLKGLRLPENGRVLKHEMLENIGPSLPA
ARTIPIQQSVNVNASGMHYSFSNGPEAVIPSKVDAIASLGVAAVKASSAFPAGPRKSPVS
RPVRHLGPPPGFSPVPSKQVTAPISGSELTNENPLMDDYSWLDGYQLPASTKGPGLGSSV
NYLSHANPQYVSNSNGLAGTGFPFPGKQFPAVQSHAEKQKGWQEYQSVEHLKLQHEQQLL
QQQLINGNQFTPLPEQYQGQSIWTGRYFV
The BLAST search returned 3 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 002377
(929 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2150280 - symbol:SMG7 "AT5G19400" species:3702... 1937 3.4e-248 2
TAIR|locus:2032205 - symbol:AT1G28260 species:3702 "Arabi... 382 1.0e-31 1
UNIPROTKB|B1ALB4 - symbol:SMG7 "Protein SMG7" species:960... 199 5.0e-22 5
MGI|MGI:2682334 - symbol:Smg7 "Smg-7 homolog, nonsense me... 201 9.2e-22 5
RGD|1310761 - symbol:Smg7 "Smg-7 homolog, nonsense mediat... 200 9.4e-22 5
UNIPROTKB|D4ACJ3 - symbol:Smg7 "Protein Smg7" species:101... 200 9.9e-22 5
UNIPROTKB|E9PCE5 - symbol:SMG7 "Protein SMG7" species:960... 199 4.6e-21 5
UNIPROTKB|Q92540 - symbol:SMG7 "Protein SMG7" species:960... 199 7.6e-21 5
UNIPROTKB|E9PCI0 - symbol:SMG7 "Protein SMG7" species:960... 199 7.9e-21 5
UNIPROTKB|F1S660 - symbol:SMG7 "Uncharacterized protein" ... 199 8.7e-21 4
UNIPROTKB|E9PD50 - symbol:SMG7 "Protein SMG7" species:960... 199 9.0e-21 5
UNIPROTKB|E9PEH2 - symbol:SMG7 "Protein SMG7" species:960... 199 9.4e-21 5
UNIPROTKB|F1N4M5 - symbol:SMG7 "Uncharacterized protein" ... 199 1.1e-20 5
UNIPROTKB|F1NG37 - symbol:Gga.53209 "Uncharacterized prot... 199 1.2e-19 4
UNIPROTKB|E1BFK4 - symbol:SMG6 "Uncharacterized protein" ... 202 3.7e-18 3
UNIPROTKB|Q86US8 - symbol:SMG6 "Telomerase-binding protei... 206 4.0e-17 3
MGI|MGI:2144117 - symbol:Smg6 "Smg-6 homolog, nonsense me... 195 7.2e-17 3
UNIPROTKB|E1C510 - symbol:SMG6 "Uncharacterized protein" ... 209 9.2e-17 3
UNIPROTKB|Q5RAK6 - symbol:SMG6 "Telomerase-binding protei... 200 2.2e-16 3
ZFIN|ZDB-GENE-081107-52 - symbol:smg6 "Smg-6 homolog, non... 222 1.8e-15 2
ZFIN|ZDB-GENE-030131-9122 - symbol:smg7 "Smg-7 homolog, n... 202 8.6e-14 3
UNIPROTKB|G4N857 - symbol:MGG_06307 "Uncharacterized prot... 196 1.5e-11 3
ZFIN|ZDB-GENE-050913-144 - symbol:smg5 "Smg-5 homolog, no... 169 1.2e-10 3
RGD|1584731 - symbol:Smg5 "Smg-5 homolog, nonsense mediat... 160 1.0e-09 3
UNIPROTKB|Q9UPR3 - symbol:SMG5 "Protein SMG5" species:960... 161 1.3e-09 3
UNIPROTKB|F1RP14 - symbol:SMG5 "Uncharacterized protein" ... 155 2.1e-09 3
UNIPROTKB|A4IFN9 - symbol:SMG5 "Uncharacterized protein" ... 155 2.7e-09 3
ASPGD|ASPL0000044452 - symbol:AN2271 species:162425 "Emer... 182 5.3e-09 3
MGI|MGI:2447364 - symbol:Smg5 "Smg-5 homolog, nonsense me... 158 8.4e-09 3
UNIPROTKB|H9KZJ8 - symbol:SMG5 "Uncharacterized protein" ... 155 4.4e-08 2
WB|WBGene00004884 - symbol:smg-6 species:6239 "Caenorhabd... 115 9.5e-05 3
FB|FBgn0039260 - symbol:Smg6 "Smg6" species:7227 "Drosoph... 123 0.00014 3
>TAIR|locus:2150280 [details] [associations]
symbol:SMG7 "AT5G19400" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=IMP]
[GO:0007126 "meiosis" evidence=IMP] [GO:0090306 "spindle assembly
involved in meiosis" evidence=IMP] [GO:0000932 "cytoplasmic mRNA
processing body" evidence=IDA] GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000184 GO:GO:0000932 GO:GO:0090306
InterPro:IPR018834 InterPro:IPR019458 Pfam:PF10374 Pfam:PF10373
KO:K14409 EMBL:EU126544 IPI:IPI00517785 RefSeq:NP_001190336.1
RefSeq:NP_001190337.1 RefSeq:NP_197441.3 UniGene:At.43842
ProteinModelPortal:A9QM73 PRIDE:A9QM73 EnsemblPlants:AT5G19400.1
EnsemblPlants:AT5G19400.2 EnsemblPlants:AT5G19400.3 GeneID:832060
KEGG:ath:AT5G19400 TAIR:At5g19400 OMA:AMHMQQV PhylomeDB:A9QM73
Genevestigator:Q3E7L8 Uniprot:A9QM73
Length = 1059
Score = 1937 (686.9 bits), Expect = 3.4e-248, Sum P(2) = 3.4e-248
Identities = 408/747 (54%), Positives = 515/747 (68%)
Query: 1 MRENYEAIILEDHAFSEQHNVEYALWQLHYRRIEELRAHYSAAVSSAGSNTSQATKVPLR 60
+RE YEAIILE H FSEQHN+E LWQLHY+RIE R H + ++S+ S +Q K P +
Sbjct: 47 LREKYEAIILESHTFSEQHNIEIPLWQLHYKRIEYFRLHINRVLASSTSTAAQNVKGPSK 106
Query: 61 SDRVTKIRQQFKTFLSEATGFYHELILKIRAKYGLPLGNFSEDSENRIIMDKDGKKSSEV 120
++++ +++ QF+TFLSEATGFYH++ILKIR+KYGLPLG+FSED +++ + DKDGK+ +EV
Sbjct: 107 AEQIAQLKLQFRTFLSEATGFYHDMILKIRSKYGLPLGSFSEDQQSQNLSDKDGKELAEV 166
Query: 121 KKGLVSCHRCLIYLGDLARYKGLYGEGDSKSREXXXXXXXXXXXXXXWPSSGNPHHQLAI 180
+K L SCHRCLIYLGDLARYKG+Y EGDS+SR+ WP+SGNPHHQLAI
Sbjct: 167 QKALKSCHRCLIYLGDLARYKGMYAEGDSRSRQYASASSYYLQAASLWPASGNPHHQLAI 226
Query: 181 LASYSSDELVAVYRYFRSLAVDSPFSTARDNLIVAFEKNRQSYSQMSGDVKSSTAKEAGR 240
+ASYS DE V YRYFRSLAV+ PF TARDNLIVAF+KNRQSY ++ K S+ R
Sbjct: 227 VASYSRDEFVTTYRYFRSLAVEYPFPTARDNLIVAFDKNRQSYEKLFVPSKDSSK----R 282
Query: 241 LTGKGRGKVEVKLASKDADMETSAVKESVSGVQEKLKAFCTRFVRLNGILFTRTSLETFA 300
LTGKGRGK ++ KDA + K+ V+ E LKAF RFV LNGILFTRTSLETF
Sbjct: 283 LTGKGRGK-GADISLKDATLVAGPEKDKVTIANEMLKAFSIRFVHLNGILFTRTSLETFF 341
Query: 301 EVLALVSSGLCELLSSGPEEELNFGSDANENALFIVRLVSILIFTVHNLKKENENQTYAE 360
+VLA SS L E++S G +EL G D +++ALFIVR+V++LIF+VHN KKE E Q+YAE
Sbjct: 342 DVLASTSSSLREVISLGSAKELTLGIDTSDSALFIVRVVTMLIFSVHNSKKETEGQSYAE 401
Query: 361 IVQRAVLLQNAFTAVFELMGHIIERCMQLSDPSSSYLLPGVLVFVEWLACYPDIASGSDA 420
IVQR +N+ TA FEL+G +IE+C+QL DPSSSY LPGVLVFVEWLAC PDIA GSD
Sbjct: 402 IVQRVEPARNSLTASFELLGLVIEKCVQLGDPSSSYFLPGVLVFVEWLACCPDIALGSDP 461
Query: 421 DERQATVRSNFWNQCISFLNKILSLGPMSVADDEDLTCFFNMSRYDEAETENRLALWEDI 480
D+RQ VR++FWNQ + F N++LSLGP + D ED TCF NMS YDE ETENRLALWED
Sbjct: 462 DDRQTAVRNSFWNQFVVFFNQVLSLGPTFIDDVEDETCFSNMSLYDERETENRLALWEDY 521
Query: 481 ELRGFLPLLPAQTILDFSRKISFGGDGNKERKDRVKRIFAAGKALANVIMVDQKPVCFDS 540
ELRGFLPLLPAQTIL+FSRK SFG +G KE+K R+KRIFAAGKAL +VI VDQ V FDS
Sbjct: 522 ELRGFLPLLPAQTILNFSRKHSFGTEGPKEKKARIKRIFAAGKALTSVIKVDQNHVYFDS 581
Query: 541 KVKKFVIGTEPLDDITFTSSDVSKTNDLILENQAEKAMNLGVVQAPQ-LYMDGEEED--E 597
K KKF++G +P DD + S K + + +NQ N ++Q Q +YM GEE+D E
Sbjct: 582 KKKKFLVGVKPADDFLDSHSSPPKACNALQDNQVMIDHNSPIMQLDQQIYM-GEEDDDDE 640
Query: 598 VIVFKPAVTEKRADVVGSTWMYYDGFTPGHNAA-VGDLQFYAGSVSTSQDNLRQQSTYDS 656
VIVFKP VTEKR + ++ GF +GD + +GS +N Q+ ++
Sbjct: 641 VIVFKPLVTEKRKEASDQIYVPSGGFRKSDQVTTMGDFKALSGSDVAFHENQILQARGNA 700
Query: 657 SLPLPVSVG-NILPQHLQSVQPHAPK-QLMEEEV----SLANSLKGLRLPENGRVLKH-E 709
S+ +P SVG N+L S Q A Q ++ +V S+ +L GL L H +
Sbjct: 701 SIQVPASVGANLLGPLQPSTQSQAMHMQQVQTQVQVPASVGANLLGLLLTSTQSQAMHMQ 760
Query: 710 MLEN--IGP----SLPAARTIPIQQSV 730
++ + P SL A+R PIQ V
Sbjct: 761 QVQTQAVNPQPAQSLAASRLQPIQSQV 787
Score = 477 (173.0 bits), Expect = 3.4e-248, Sum P(2) = 3.4e-248
Identities = 117/271 (43%), Positives = 150/271 (55%)
Query: 664 VGNILPQHLQSVQ-PHAPKQLMEEEVSLANSLKGLRLPENGRVLKHEMLENIGPSLPAAR 722
V ++ P H QS K EE SLA+SL G NG V+++EM N G S A
Sbjct: 805 VSHVSPAHSQSTSFGGGSKWSPEEAASLASSLSGFAQLGNGHVMRNEMQGNHGVSYYPAH 864
Query: 723 TIPIQQSVNVNA-SGMHYSFSNGPEAVIPSKVDAIASLGVAAVKASSAFPAGPRKSPVSR 781
++P+ QS N N GM YS S PEAV P K+D + S GV A + +K+P+SR
Sbjct: 865 SLPVHQSYNGNGMGGMPYSQSRTPEAVFPPKIDPVLSSGVVA-DGLGVQSSLAKKNPISR 923
Query: 782 PVRHLGPPPGFSPVPSKQVTAPISGSELTNENPL-MDDYSWLDGYQLPASTKGPGLGSSV 840
RHLGPPPGF+ VP+K P GSEL+ N L +DDYSWLDGYQ +S +G GL SS+
Sbjct: 924 AFRHLGPPPGFNSVPAKLQKEPAPGSELSGNNHLPVDDYSWLDGYQAQSS-RGVGLNSSL 982
Query: 841 NYLSHANPQYV-SNSNGLAG-TGFPFPGKQFPAVQSHAEKQKGWQEYQSVXXXXXXXXXX 898
NY + P+++ S NGL G FPFPGKQ P Q A+ + +Q+
Sbjct: 983 NYATSGKPEHLGSTGNGLNGPANFPFPGKQVPTSQVQAD----FPYFQNPQKDNFVD--- 1035
Query: 899 XXXXXXINGNQFTPLPEQYQGQSIWTGRYFV 929
+Q T LPEQYQGQS W+ R+FV
Sbjct: 1036 -------KNHQSTQLPEQYQGQSTWSSRHFV 1059
>TAIR|locus:2032205 [details] [associations]
symbol:AT1G28260 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] EMBL:CP002684 EMBL:AC021044
InterPro:IPR018834 InterPro:IPR019458 Pfam:PF10374 Pfam:PF10373
IPI:IPI00540383 PIR:G86408 RefSeq:NP_174147.1 RefSeq:NP_973927.1
UniGene:At.43752 ProteinModelPortal:Q9FZ99 STRING:Q9FZ99
PRIDE:Q9FZ99 EnsemblPlants:AT1G28260.1 EnsemblPlants:AT1G28260.2
GeneID:839720 KEGG:ath:AT1G28260 TAIR:At1g28260 InParanoid:Q9FZ99
OMA:WEDHELK PhylomeDB:Q9FZ99 ProtClustDB:CLSN2679385
Genevestigator:Q9FZ99 Uniprot:Q9FZ99
Length = 880
Score = 382 (139.5 bits), Expect = 1.0e-31, P = 1.0e-31
Identities = 134/448 (29%), Positives = 202/448 (45%)
Query: 17 EQHNVEYALWQL-HYRRIEELRAHYSAAVSSAGSNTSQATKVPLRSDRVTKIRQ-QFKTF 74
E +N+E LW L H + I L S + AGS Q K L+ + + ++ +K
Sbjct: 17 EVNNIEKQLWTLIHSKTI--LHTDVSELYAKAGSTYEQIFKSNLQHEELQEVEFCLWKLH 74
Query: 75 LSEATGFYHELILKIRAK----YGLPLGNFSEDSENRIIMDKD-----GKKSSEVKKGLV 125
F L AK + L L +E +N I + ++S E K +
Sbjct: 75 YKHIDEFRKGLKTNDHAKHMKAFKLFLSKAAEFYQNLISKVRGYYHRLSEESGEQKSRFL 134
Query: 126 SCHRCLIYLGDLARYKGLYGEGDSKSREXXXXXXXXXXXXXXWPSSGNPHHQLAILASYS 185
CHR I LGDL RY+ Y + WP SGNPH+QLA+LA+Y
Sbjct: 135 -CHRFYICLGDLQRYQEQYLKAHEHPN-WSTAATYYLEAAKSWPDSGNPHNQLAVLATYV 192
Query: 186 SDELVAVYRYFRSLAVDSPFSTARDNLIVAFEKNRQSYSQMSGDVKSSTAKEAGRLTGKG 245
SDEL+A+Y RSLAV PF A +NL++ FEKNR S Q ST E L
Sbjct: 193 SDELLALYHCVRSLAVKEPFPGASNNLLLLFEKNRSSPLQ-----SLSTDAEFNYLNPS- 246
Query: 246 RGKVEVKLASKDADMETSAVKESVSGVQEKLKAFCTRFVRLNGILFTRTSLETFAEVLAL 305
E K++ K+ D+ + A E V+G+ VR F ++S + F A
Sbjct: 247 ----EKKVSVKERDL-SKAKGELVAGID-----LWPLVVRTTSFFFLKSSFDEFGRAFAS 296
Query: 306 VSSGLCELLSSGPE------EELNFGSDANENALFIVRLVSILIFTVHNLKKENENQTYA 359
L ++ E F A + I+++V++ I+ HNL + N +
Sbjct: 297 TIRELDAAFAADDRNLEAMLESYQFMDTARKGPYKILQIVAVFIYIFHNLAEANGS---- 352
Query: 360 EIVQRAVLLQN-AFTAVFELMGHIIERCMQLSDPSSSYLLPGVLVFVEWLACYPDIASGS 418
+IV+ V L N A T VF +MG ++ERC++ + S LLP +LVF+++L D
Sbjct: 353 DIVKEEVKLTNLALTMVFIVMGRVVERCLKTTPLDSCPLLPALLVFLDYLPFLLDKVEEE 412
Query: 419 DA----DERQATVRSNFWNQCISFLNKI 442
+ DE+ + S F+ + + LN++
Sbjct: 413 EEECRFDEKSKSAISYFFGKLVDILNQL 440
Score = 195 (73.7 bits), Expect = 1.6e-15, Sum P(2) = 1.6e-15
Identities = 96/394 (24%), Positives = 169/394 (42%)
Query: 359 AEIVQRAVLLQN-AFTAVFELMGHIIERCMQLSDPSSSYLLPGVLVFVEWLACYPDIASG 417
++IV+ V L N A T VF +MG ++ERC++ + S LLP +LVF+++L P +
Sbjct: 352 SDIVKEEVKLTNLALTMVFIVMGRVVERCLKTTPLDSCPLLPALLVFLDYL---PFLLDK 408
Query: 418 SDADERQATVRSNFWNQCISFLNKILSLGPMSVADDEDLTCFFNMSRYDEAETENRLALW 477
+ +E + + F K++ + ++ +D C A+T LALW
Sbjct: 409 VEEEEEECRFDEKSKSAISYFFGKLVDI--LNQLKVKDKNC--------PAKT--LLALW 456
Query: 478 EDIELRGFLPLLPAQTILDFSRKISFGGDGNKERKDRVKRIFAAGKALANVIMV-DQKPV 536
ED EL+ PL P +LDFS + ++ ++ R++RI ++ + QK +
Sbjct: 457 EDHELKSLAPLAPIHALLDFSSNMDLRESFDRGKELRLQRIISSAIDITTRQKKGSQKWL 516
Query: 537 CFDSKVKKFVIGTEPLDDITFTSSDVSKTNDLILENQAEKAMNLGVVQAPQLYMDGE--- 593
FD++ F + L ++ ++ N E + K + +G V+ L +
Sbjct: 517 FFDNQRTHFYTTSGELQ----SNGELFHGNG---EGRNRKCVTIGPVEIIPLENERSVPV 569
Query: 594 EEDEVIVFKPAVTEKRADVVGSTWMYYDGFTPGHNAAVGDLQFYAGSVSTSQDNLRQQST 653
EE+EVI+ KP V + A + Y G D +TS D+LR+ +
Sbjct: 570 EEEEVILLKPLVRCQSAPI------YSSGIAA--KPLSSDCTTSGNQTTTSNDSLRRTLS 621
Query: 654 YDSSLPLPVSVG--NILPQHLQSVQPHAPKQLMEEEVSLANSLKGLRLPENGRVLKHEML 711
S + G + PQHL H + + ++ + E GR L
Sbjct: 622 LIGSESFSFTQGLKDTDPQHL-----HLEEGTVSGRPPSLSAWVVDKNKEKGR-LGLSKP 675
Query: 712 ENIGPSLPAARTIPIQQSVNVNASGMHYSFSNGP 745
+GP + + S+++N+S H + S P
Sbjct: 676 NGLGP-IDETGPVSAFDSLSINSSTEHPASSYSP 708
Score = 90 (36.7 bits), Expect = 1.6e-15, Sum P(2) = 1.6e-15
Identities = 23/81 (28%), Positives = 40/81 (49%)
Query: 5 YEAIILEDHAFSEQHNVEYALWQLHYRRIEELRAHYSAAVSSAGSNTSQATKVPLRSDRV 64
YE I + E VE+ LW+LHY+ I+E R ++ + +A K+ L
Sbjct: 50 YEQIFKSNLQHEELQEVEFCLWKLHYKHIDEFR---KGLKTNDHAKHMKAFKLFL----- 101
Query: 65 TKIRQQFKTFLSEATGFYHEL 85
+K + ++ +S+ G+YH L
Sbjct: 102 SKAAEFYQNLISKVRGYYHRL 122
>UNIPROTKB|B1ALB4 [details] [associations]
symbol:SMG7 "Protein SMG7" species:9606 "Homo sapiens"
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111 "intermediate
filament cytoskeleton" evidence=IDA] InterPro:IPR011990
GO:GO:0005737 EMBL:AL137800 GO:GO:0045111 Gene3D:1.25.40.10
InterPro:IPR018834 InterPro:IPR019458 Pfam:PF10374 Pfam:PF10373
EMBL:AL449223 UniGene:Hs.591463 HGNC:HGNC:16792
HOGENOM:HOG000049052 HOVERGEN:HBG056330 ChiTaRS:SMG7 EMBL:AL355387
EMBL:AL359876 IPI:IPI00973089 SMR:B1ALB4 STRING:B1ALB4
Ensembl:ENST00000419169 Uniprot:B1ALB4
Length = 757
Score = 199 (75.1 bits), Expect = 5.0e-22, Sum P(5) = 5.0e-22
Identities = 53/166 (31%), Positives = 83/166 (50%)
Query: 65 TKIRQQFKTFLSEATGFYHELILKIRAKYGLPLGNFSEDSENRIIMDKDGKKSSEVKKGL 124
++++ FL A+GFY +L+ ++ + + L + S+ II +K S+ VK
Sbjct: 43 SEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQS 102
Query: 125 VSC----HRCLIYLGDLARYKGLYGEGDSKSREXXXXXXXXXXXXXXWPSSGNPHHQLAI 180
SC CL++LGD+ARY+ + +S R PS+G P++QLAI
Sbjct: 103 SSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQLV----------PSNGQPYNQLAI 152
Query: 181 LASYSSDELVAVYRYFRSLAVDSPFSTARDNLIVAFEKNRQSYSQM 226
LAS D L ++ Y RS+AV PF A NL A K +S ++
Sbjct: 153 LASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRDEV 198
Score = 102 (41.0 bits), Expect = 5.0e-22, Sum P(5) = 5.0e-22
Identities = 64/232 (27%), Positives = 94/232 (40%)
Query: 254 ASKDADMETSAVKESVSGVQEK--LKAFCTRFVRLNGILFTRTSLETFAEVLALVSSGLC 311
AS + S ES V+ K + F F++ +G ++ SLE S L
Sbjct: 180 ASTNLQKALSKALESRDEVKTKWGVSDFIKAFIKFHGHVYLSKSLEKL--------SPLR 231
Query: 312 ELLSSGPEEELNFGSDANENALFIVRLVSILIFTVHNLK---KENENQTYAEIVQRAVLL 368
E L + L F N L V ++++ F +H+L+ E E TY++ Q L
Sbjct: 232 EKLEE-QFKRLLFQKAFNSQQLVHVTVINL--FQLHHLRDFSNETEQHTYSQDEQ---LC 285
Query: 369 QNAFTAVFELMGHIIERC-MQLSDPSSSYL---LPGVLVFVEWLACYPDIASGSDADERQ 424
A+F I+ +C +Q SY LP V V ++WL P + + DERQ
Sbjct: 286 WTQLLALFMSFLGILCKCPLQNESQEESYNAYPLPAVKVSMDWLRLRPRVFQEAVVDERQ 345
Query: 425 ATVRSNFWNQCISFLNKILSLGPMSVADDEDLTCFFNMSRYDEAETENRLAL 476
W IS LN S P +EDL+ +E E + LAL
Sbjct: 346 Y-----IWPWLISLLN---SFHP----HEEDLSSISATPLPEEFELQGFLAL 385
Score = 86 (35.3 bits), Expect = 5.0e-22, Sum P(5) = 5.0e-22
Identities = 33/99 (33%), Positives = 54/99 (54%)
Query: 478 EDIELRGFLPLLPAQTILDFSRKISFGGDGNKE---RKDRVKRIFAAGKALANVIMVDQK 534
E+ EL+GFL L P+ LDFS+ G G+KE R+ R +R+ + GK +A D +
Sbjct: 375 EEFELQGFLALRPSFRNLDFSKGHQ-GITGDKEGQQRRIRQQRLISIGKWIA-----DNQ 428
Query: 535 P--VCFDSKVKKFVIGTEPLDDITFTSSDVSKTNDLILE 571
P + +++V K + TE + ++ +K N LIL+
Sbjct: 429 PRLIQCENEVGKLLFITE-IPELILEDPSEAKEN-LILQ 465
Score = 46 (21.3 bits), Expect = 5.0e-22, Sum P(5) = 5.0e-22
Identities = 17/54 (31%), Positives = 21/54 (38%)
Query: 782 PVRHLGPPPGFSPVPSKQVTAPISGSELTNENPLMDDYSWLDGYQLPASTKGPG 835
P+ H P F P+PS+ P T P +S GY PA PG
Sbjct: 560 PIHH---PGAFPPLPSRPGFPPP-----TYVIPPPVAFSMGSGYTFPAGVSVPG 605
Score = 40 (19.1 bits), Expect = 5.0e-22, Sum P(5) = 5.0e-22
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 865 PGKQFPAVQSHAEKQKGWQEYQ 886
P K PA+ G+Q+YQ
Sbjct: 683 PTKAVPALGKSPPHHSGFQQYQ 704
Score = 37 (18.1 bits), Expect = 4.0e-21, Sum P(5) = 4.0e-21
Identities = 9/25 (36%), Positives = 11/25 (44%)
Query: 769 AFPAGPRKSPVSRPVRHLGPPPGFS 793
AFP P + P + PP FS
Sbjct: 566 AFPPLPSRPGFPPPTYVIPPPVAFS 590
>MGI|MGI:2682334 [details] [associations]
symbol:Smg7 "Smg-7 homolog, nonsense mediated mRNA decay
factor (C. elegans)" species:10090 "Mus musculus" [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0008150
"biological_process" evidence=ND] [GO:0051721 "protein phosphatase
2A binding" evidence=ISO] InterPro:IPR011990 PROSITE:PS50005
PROSITE:PS50293 MGI:MGI:2682334 GO:GO:0005634 GO:GO:0005737
GO:GO:0000184 GO:GO:0045111 Gene3D:1.25.40.10 GO:GO:0051721
InterPro:IPR018834 InterPro:IPR019458 Pfam:PF10374 Pfam:PF10373
GeneTree:ENSGT00560000077120 eggNOG:NOG302147 CTD:9887
HOGENOM:HOG000049052 HOVERGEN:HBG056330 KO:K14409 EMBL:AK129101
EMBL:BC082789 EMBL:BC086651 IPI:IPI00420598 IPI:IPI00471242
IPI:IPI00678743 RefSeq:NP_001005507.1 RefSeq:NP_001153728.1
RefSeq:NP_001153729.1 UniGene:Mm.270775 ProteinModelPortal:Q5RJH6
SMR:Q5RJH6 STRING:Q5RJH6 PhosphoSite:Q5RJH6 PaxDb:Q5RJH6
PRIDE:Q5RJH6 Ensembl:ENSMUST00000043560 Ensembl:ENSMUST00000073441
Ensembl:ENSMUST00000111836 GeneID:226517 KEGG:mmu:226517
UCSC:uc007czn.1 UCSC:uc007czo.2 UCSC:uc007czp.2 OMA:PASSDHS
OrthoDB:EOG4X97GD NextBio:378192 PMAP-CutDB:Q5RJH6 Bgee:Q5RJH6
Genevestigator:Q5RJH6 GermOnline:ENSMUSG00000042772 Uniprot:Q5RJH6
Length = 1138
Score = 201 (75.8 bits), Expect = 9.2e-22, Sum P(5) = 9.2e-22
Identities = 53/166 (31%), Positives = 83/166 (50%)
Query: 65 TKIRQQFKTFLSEATGFYHELILKIRAKYGLPLGNFSEDSENRIIMDKDGKKSSEVKKGL 124
++++ FL A+GFY +L+ ++ + + L + S+ II +K S+ VK
Sbjct: 85 SEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHSSTIVKPQS 144
Query: 125 VSC----HRCLIYLGDLARYKGLYGEGDSKSREXXXXXXXXXXXXXXWPSSGNPHHQLAI 180
SC CL++LGD+ARY+ + +S R PS+G P++QLAI
Sbjct: 145 SSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQLV----------PSNGQPYNQLAI 194
Query: 181 LASYSSDELVAVYRYFRSLAVDSPFSTARDNLIVAFEKNRQSYSQM 226
LAS D L ++ Y RS+AV PF A NL A K +S ++
Sbjct: 195 LASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRDEL 240
Score = 115 (45.5 bits), Expect = 1.2e-12, Sum P(5) = 1.2e-12
Identities = 40/156 (25%), Positives = 73/156 (46%)
Query: 1 MRENYEAIILEDHAFSEQHNVEYALWQLHYRRIEELRAHYSAAVSSAGSNTSQATKVPLR 60
+++ Y+ +++ D ++ VE LW H A + + G ++A P R
Sbjct: 36 LQDLYQKMLVTDLEYALDKKVEQDLWN-H--------AFKNQITTLQGQAKNRAN--PNR 84
Query: 61 SDRVTKIRQQFKTFLSEATGFYHELILKIRAKYGLPLGNFSEDSENRIIMDKDGKKSSEV 120
S+ ++ FL A+GFY +L+ ++ + + L + S+ II +K S+ V
Sbjct: 85 SE----VQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHSSTIV 140
Query: 121 KKGLVSC----HRCLIYLGDLARYKGLYGEGDSKSR 152
K SC CL++LGD+ARY+ + +S R
Sbjct: 141 KPQSSSCSYICQHCLVHLGDIARYRNQTSQAESYYR 176
Score = 98 (39.6 bits), Expect = 9.2e-22, Sum P(5) = 9.2e-22
Identities = 37/113 (32%), Positives = 59/113 (52%)
Query: 464 RYDEAETENRLALWEDIELRGFLPLLPAQTILDFSRKISFGGDGNKE---RKDRVKRIFA 520
R D+ N L E+ EL+GFL L P+ LDFS+ G G+KE R+ R +R+ +
Sbjct: 402 REDDLSNTNATPLPEEFELQGFLALRPSFRNLDFSKGHQ-GITGDKEGQQRRIRQQRLIS 460
Query: 521 AGKALANVIMVDQKP--VCFDSKVKKFVIGTEPLDDITFTSSDVSKTNDLILE 571
GK +A D +P + +++V K + TE + ++ +K N LIL+
Sbjct: 461 IGKWIA-----DNQPRLIQCENEVGKLLFITE-IPELILEDPSEAKEN-LILQ 506
Score = 95 (38.5 bits), Expect = 9.2e-22, Sum P(5) = 9.2e-22
Identities = 52/195 (26%), Positives = 80/195 (41%)
Query: 254 ASKDADMETSAVKESVSGVQEK--LKAFCTRFVRLNGILFTRTSLETFAEVLALVSSGLC 311
AS + S ES ++ K + F F++ +G ++ SLE S L
Sbjct: 222 ASTNLQKALSKALESRDELKTKWGVSDFIKAFIKFHGHVYLSKSLEKL--------SPLR 273
Query: 312 ELLSSGPEEELNFGSDANENALFIVRLVSILIFTVHNLK---KENENQTYAEIVQRAVLL 368
E L + L F N L V ++++ F +H+L+ E E +Y++ Q L
Sbjct: 274 EKLEE-QFKRLLFQKAFNSQQLVHVTVINL--FQLHHLRDFSNETEQHSYSQDEQ---LC 327
Query: 369 QNAFTAVFELMGHIIERCMQLSDPSSS---YLLPGVLVFVEWLACYPDIASGSDADERQA 425
A+F I+ +C +D S Y LP V V ++WL P + + DERQ
Sbjct: 328 WTQLLALFMSFLGILCKCPLQNDSQESNNAYPLPAVKVSMDWLRLRPRVFQEAVVDERQY 387
Query: 426 TVRSNFWNQCISFLN 440
W IS LN
Sbjct: 388 -----IWPWLISLLN 397
Score = 48 (22.0 bits), Expect = 9.2e-22, Sum P(5) = 9.2e-22
Identities = 24/90 (26%), Positives = 31/90 (34%)
Query: 750 PSKVDAIASLGVAAVKASSAFPAGPRKSPVSR----PVRHLGPPPGFSPVPSKQVTAPIS 805
P +V + L V + P S S P+ H P F P+PS+ P
Sbjct: 563 PKEVKSQTELRKTPVSEARKTPVTQTPSQTSNSQFIPIHH---PGAFPPLPSRPGFPPP- 618
Query: 806 GSELTNENPLMDDYSWLDGYQLPASTKGPG 835
T P +S GY PA PG
Sbjct: 619 ----TYVIPPPVAFSMGSGYTFPAGVSVPG 644
Score = 40 (19.1 bits), Expect = 9.2e-22, Sum P(5) = 9.2e-22
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 865 PGKQFPAVQSHAEKQKGWQEYQ 886
P K PA+ G+Q+YQ
Sbjct: 722 PTKVIPALGKSPPHHSGFQQYQ 743
Score = 37 (18.1 bits), Expect = 2.6e-15, Sum P(3) = 2.6e-15
Identities = 6/16 (37%), Positives = 11/16 (68%)
Query: 905 INGNQFTPLPEQYQGQ 920
++ TPLPE+++ Q
Sbjct: 406 LSNTNATPLPEEFELQ 421
Score = 37 (18.1 bits), Expect = 2.3e-10, Sum P(2) = 2.3e-10
Identities = 8/13 (61%), Positives = 8/13 (61%)
Query: 387 MQLSDPSSSYLLP 399
M DP SS LLP
Sbjct: 862 MPFEDPKSSPLLP 874
>RGD|1310761 [details] [associations]
symbol:Smg7 "Smg-7 homolog, nonsense mediated mRNA decay factor
(C. elegans)" species:10116 "Rattus norvegicus" [GO:0005634
"nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0045111 "intermediate filament cytoskeleton" evidence=ISO]
[GO:0051721 "protein phosphatase 2A binding" evidence=ISO]
InterPro:IPR011990 RGD:1310761 Gene3D:1.25.40.10 InterPro:IPR018834
InterPro:IPR019458 Pfam:PF10374 Pfam:PF10373 IPI:IPI00567642
Ensembl:ENSRNOT00000066334 UCSC:RGD:1310761 ArrayExpress:F1LWR5
Uniprot:F1LWR5
Length = 1140
Score = 200 (75.5 bits), Expect = 9.4e-22, Sum P(5) = 9.4e-22
Identities = 53/166 (31%), Positives = 83/166 (50%)
Query: 65 TKIRQQFKTFLSEATGFYHELILKIRAKYGLPLGNFSEDSENRIIMDKDGKKSSEVKKGL 124
++++ FL A+GFY +L+ ++ + + L + S+ II +K S+ VK
Sbjct: 84 SEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQS 143
Query: 125 VSC----HRCLIYLGDLARYKGLYGEGDSKSREXXXXXXXXXXXXXXWPSSGNPHHQLAI 180
SC CL++LGD+ARY+ + +S R PS+G P++QLAI
Sbjct: 144 SSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQLV----------PSNGQPYNQLAI 193
Query: 181 LASYSSDELVAVYRYFRSLAVDSPFSTARDNLIVAFEKNRQSYSQM 226
LAS D L ++ Y RS+AV PF A NL A K +S ++
Sbjct: 194 LASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRDEL 239
Score = 114 (45.2 bits), Expect = 1.3e-12, Sum P(5) = 1.3e-12
Identities = 40/156 (25%), Positives = 73/156 (46%)
Query: 1 MRENYEAIILEDHAFSEQHNVEYALWQLHYRRIEELRAHYSAAVSSAGSNTSQATKVPLR 60
+++ Y+ +++ D ++ VE LW H A + + G ++A P R
Sbjct: 35 LQDLYQKMLVTDLEYALDKKVEQDLWN-H--------AFKNQITTLQGQAKNRAN--PNR 83
Query: 61 SDRVTKIRQQFKTFLSEATGFYHELILKIRAKYGLPLGNFSEDSENRIIMDKDGKKSSEV 120
S+ ++ FL A+GFY +L+ ++ + + L + S+ II +K S+ V
Sbjct: 84 SE----VQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIV 139
Query: 121 KKGLVSC----HRCLIYLGDLARYKGLYGEGDSKSR 152
K SC CL++LGD+ARY+ + +S R
Sbjct: 140 KPQSSSCSYICQHCLVHLGDIARYRNQTSQAESYYR 175
Score = 101 (40.6 bits), Expect = 9.4e-22, Sum P(5) = 9.4e-22
Identities = 36/116 (31%), Positives = 60/116 (51%)
Query: 464 RYDEAETENRLALWEDIELRGFLPLLPAQTILDFSRKISFGGDGNKE---RKDRVKRIFA 520
R D+ + N L E+ EL+GFL L P+ LDFS+ G G+KE R+ R +R+ +
Sbjct: 401 REDDLSSTNATPLPEEFELQGFLALRPSFRNLDFSKGHQ-GITGDKEGQQRRIRQQRLIS 459
Query: 521 AGKALANVIMVDQKP--VCFDSKVKKFVIGTEPLDDITFTSSDVSKTNDLILENQA 574
GK +A D +P + +++V K + TE + ++ +K N ++ E A
Sbjct: 460 IGKWIA-----DNQPRLIQCENEVGKLLFITE-IPELILEDPSEAKENLILQETSA 509
Score = 95 (38.5 bits), Expect = 9.4e-22, Sum P(5) = 9.4e-22
Identities = 52/195 (26%), Positives = 80/195 (41%)
Query: 254 ASKDADMETSAVKESVSGVQEK--LKAFCTRFVRLNGILFTRTSLETFAEVLALVSSGLC 311
AS + S ES ++ K + F F++ +G ++ SLE S L
Sbjct: 221 ASTNLQKALSKALESRDELKTKWGVSDFIKAFIKFHGHVYLSKSLEKL--------SPLR 272
Query: 312 ELLSSGPEEELNFGSDANENALFIVRLVSILIFTVHNLK---KENENQTYAEIVQRAVLL 368
E L + L F N L V ++++ F +H+L+ E E +Y++ Q L
Sbjct: 273 EKLEE-QFKRLLFQKAFNSQQLVHVTVINL--FQLHHLRDFSNETEQHSYSQDEQ---LC 326
Query: 369 QNAFTAVFELMGHIIERCMQLSDPSSSYL---LPGVLVFVEWLACYPDIASGSDADERQA 425
A+F I+ +C +D SY LP V V ++WL P + + DERQ
Sbjct: 327 WTQLLALFMSFLGILCKCPLQNDSQESYNAYPLPAVKVSMDWLRLRPRVFQEAVVDERQY 386
Query: 426 TVRSNFWNQCISFLN 440
W IS LN
Sbjct: 387 -----IWPWLISLLN 396
Score = 46 (21.3 bits), Expect = 9.4e-22, Sum P(5) = 9.4e-22
Identities = 17/54 (31%), Positives = 21/54 (38%)
Query: 782 PVRHLGPPPGFSPVPSKQVTAPISGSELTNENPLMDDYSWLDGYQLPASTKGPG 835
P+ H P F P+PS+ P T P +S GY PA PG
Sbjct: 600 PIHH---PGAFPPLPSRPGFPPP-----TYVIPPPVAFSMGSGYTFPAGVSVPG 645
Score = 40 (19.1 bits), Expect = 9.4e-22, Sum P(5) = 9.4e-22
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 865 PGKQFPAVQSHAEKQKGWQEYQ 886
P K PA+ G+Q+YQ
Sbjct: 723 PTKVIPALGKSPPHHSGFQQYQ 744
Score = 37 (18.1 bits), Expect = 7.5e-21, Sum P(5) = 7.5e-21
Identities = 9/25 (36%), Positives = 11/25 (44%)
Query: 769 AFPAGPRKSPVSRPVRHLGPPPGFS 793
AFP P + P + PP FS
Sbjct: 606 AFPPLPSRPGFPPPTYVIPPPVAFS 630
Score = 37 (18.1 bits), Expect = 3.4e-15, Sum P(3) = 3.4e-15
Identities = 6/16 (37%), Positives = 11/16 (68%)
Query: 905 INGNQFTPLPEQYQGQ 920
++ TPLPE+++ Q
Sbjct: 405 LSSTNATPLPEEFELQ 420
Score = 37 (18.1 bits), Expect = 3.0e-10, Sum P(2) = 3.0e-10
Identities = 8/13 (61%), Positives = 8/13 (61%)
Query: 387 MQLSDPSSSYLLP 399
M DP SS LLP
Sbjct: 863 MPFEDPKSSPLLP 875
>UNIPROTKB|D4ACJ3 [details] [associations]
symbol:Smg7 "Protein Smg7" species:10116 "Rattus
norvegicus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IEA]
InterPro:IPR011990 RGD:1310761 GO:GO:0005737 GO:GO:0045111
Gene3D:1.25.40.10 InterPro:IPR018834 InterPro:IPR019458
Pfam:PF10374 Pfam:PF10373 GeneTree:ENSGT00560000077120 CTD:9887
KO:K14409 OMA:PASSDHS OrthoDB:EOG4X97GD IPI:IPI00957211
RefSeq:NP_001178478.1 UniGene:Rn.60213 Ensembl:ENSRNOT00000044235
GeneID:360855 KEGG:rno:360855 NextBio:674384 ArrayExpress:D4ACJ3
Uniprot:D4ACJ3
Length = 1149
Score = 200 (75.5 bits), Expect = 9.9e-22, Sum P(5) = 9.9e-22
Identities = 53/166 (31%), Positives = 83/166 (50%)
Query: 65 TKIRQQFKTFLSEATGFYHELILKIRAKYGLPLGNFSEDSENRIIMDKDGKKSSEVKKGL 124
++++ FL A+GFY +L+ ++ + + L + S+ II +K S+ VK
Sbjct: 93 SEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQS 152
Query: 125 VSC----HRCLIYLGDLARYKGLYGEGDSKSREXXXXXXXXXXXXXXWPSSGNPHHQLAI 180
SC CL++LGD+ARY+ + +S R PS+G P++QLAI
Sbjct: 153 SSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQLV----------PSNGQPYNQLAI 202
Query: 181 LASYSSDELVAVYRYFRSLAVDSPFSTARDNLIVAFEKNRQSYSQM 226
LAS D L ++ Y RS+AV PF A NL A K +S ++
Sbjct: 203 LASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRDEL 248
Score = 114 (45.2 bits), Expect = 1.3e-12, Sum P(5) = 1.3e-12
Identities = 40/156 (25%), Positives = 73/156 (46%)
Query: 1 MRENYEAIILEDHAFSEQHNVEYALWQLHYRRIEELRAHYSAAVSSAGSNTSQATKVPLR 60
+++ Y+ +++ D ++ VE LW H A + + G ++A P R
Sbjct: 44 LQDLYQKMLVTDLEYALDKKVEQDLWN-H--------AFKNQITTLQGQAKNRAN--PNR 92
Query: 61 SDRVTKIRQQFKTFLSEATGFYHELILKIRAKYGLPLGNFSEDSENRIIMDKDGKKSSEV 120
S+ ++ FL A+GFY +L+ ++ + + L + S+ II +K S+ V
Sbjct: 93 SE----VQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIV 148
Query: 121 KKGLVSC----HRCLIYLGDLARYKGLYGEGDSKSR 152
K SC CL++LGD+ARY+ + +S R
Sbjct: 149 KPQSSSCSYICQHCLVHLGDIARYRNQTSQAESYYR 184
Score = 101 (40.6 bits), Expect = 9.9e-22, Sum P(5) = 9.9e-22
Identities = 36/116 (31%), Positives = 60/116 (51%)
Query: 464 RYDEAETENRLALWEDIELRGFLPLLPAQTILDFSRKISFGGDGNKE---RKDRVKRIFA 520
R D+ + N L E+ EL+GFL L P+ LDFS+ G G+KE R+ R +R+ +
Sbjct: 410 REDDLSSTNATPLPEEFELQGFLALRPSFRNLDFSKGHQ-GITGDKEGQQRRIRQQRLIS 468
Query: 521 AGKALANVIMVDQKP--VCFDSKVKKFVIGTEPLDDITFTSSDVSKTNDLILENQA 574
GK +A D +P + +++V K + TE + ++ +K N ++ E A
Sbjct: 469 IGKWIA-----DNQPRLIQCENEVGKLLFITE-IPELILEDPSEAKENLILQETSA 518
Score = 95 (38.5 bits), Expect = 9.9e-22, Sum P(5) = 9.9e-22
Identities = 52/195 (26%), Positives = 80/195 (41%)
Query: 254 ASKDADMETSAVKESVSGVQEK--LKAFCTRFVRLNGILFTRTSLETFAEVLALVSSGLC 311
AS + S ES ++ K + F F++ +G ++ SLE S L
Sbjct: 230 ASTNLQKALSKALESRDELKTKWGVSDFIKAFIKFHGHVYLSKSLEKL--------SPLR 281
Query: 312 ELLSSGPEEELNFGSDANENALFIVRLVSILIFTVHNLK---KENENQTYAEIVQRAVLL 368
E L + L F N L V ++++ F +H+L+ E E +Y++ Q L
Sbjct: 282 EKLEE-QFKRLLFQKAFNSQQLVHVTVINL--FQLHHLRDFSNETEQHSYSQDEQ---LC 335
Query: 369 QNAFTAVFELMGHIIERCMQLSDPSSSYL---LPGVLVFVEWLACYPDIASGSDADERQA 425
A+F I+ +C +D SY LP V V ++WL P + + DERQ
Sbjct: 336 WTQLLALFMSFLGILCKCPLQNDSQESYNAYPLPAVKVSMDWLRLRPRVFQEAVVDERQY 395
Query: 426 TVRSNFWNQCISFLN 440
W IS LN
Sbjct: 396 -----IWPWLISLLN 405
Score = 46 (21.3 bits), Expect = 9.9e-22, Sum P(5) = 9.9e-22
Identities = 17/54 (31%), Positives = 21/54 (38%)
Query: 782 PVRHLGPPPGFSPVPSKQVTAPISGSELTNENPLMDDYSWLDGYQLPASTKGPG 835
P+ H P F P+PS+ P T P +S GY PA PG
Sbjct: 609 PIHH---PGAFPPLPSRPGFPPP-----TYVIPPPVAFSMGSGYTFPAGVSVPG 654
Score = 40 (19.1 bits), Expect = 9.9e-22, Sum P(5) = 9.9e-22
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 865 PGKQFPAVQSHAEKQKGWQEYQ 886
P K PA+ G+Q+YQ
Sbjct: 732 PTKVIPALGKSPPHHSGFQQYQ 753
Score = 37 (18.1 bits), Expect = 7.9e-21, Sum P(5) = 7.9e-21
Identities = 9/25 (36%), Positives = 11/25 (44%)
Query: 769 AFPAGPRKSPVSRPVRHLGPPPGFS 793
AFP P + P + PP FS
Sbjct: 615 AFPPLPSRPGFPPPTYVIPPPVAFS 639
Score = 37 (18.1 bits), Expect = 3.5e-15, Sum P(3) = 3.5e-15
Identities = 6/16 (37%), Positives = 11/16 (68%)
Query: 905 INGNQFTPLPEQYQGQ 920
++ TPLPE+++ Q
Sbjct: 414 LSSTNATPLPEEFELQ 429
Score = 37 (18.1 bits), Expect = 3.0e-10, Sum P(2) = 3.0e-10
Identities = 8/13 (61%), Positives = 8/13 (61%)
Query: 387 MQLSDPSSSYLLP 399
M DP SS LLP
Sbjct: 872 MPFEDPKSSPLLP 884
>UNIPROTKB|E9PCE5 [details] [associations]
symbol:SMG7 "Protein SMG7" species:9606 "Homo sapiens"
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111 "intermediate
filament cytoskeleton" evidence=IDA] InterPro:IPR011990
GO:GO:0005737 EMBL:AL137800 GO:GO:0045111 Gene3D:1.25.40.10
InterPro:IPR018834 InterPro:IPR019458 Pfam:PF10374 Pfam:PF10373
EMBL:AL449223 IPI:IPI00448672 HGNC:HGNC:16792 ChiTaRS:SMG7
EMBL:AL355387 EMBL:AL359876 ProteinModelPortal:E9PCE5 SMR:E9PCE5
Ensembl:ENST00000456731 UCSC:uc021pga.1 ArrayExpress:E9PCE5
Bgee:E9PCE5 Uniprot:E9PCE5
Length = 1049
Score = 199 (75.1 bits), Expect = 4.6e-21, Sum P(5) = 4.6e-21
Identities = 53/166 (31%), Positives = 83/166 (50%)
Query: 65 TKIRQQFKTFLSEATGFYHELILKIRAKYGLPLGNFSEDSENRIIMDKDGKKSSEVKKGL 124
++++ FL A+GFY +L+ ++ + + L + S+ II +K S+ VK
Sbjct: 43 SEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQS 102
Query: 125 VSC----HRCLIYLGDLARYKGLYGEGDSKSREXXXXXXXXXXXXXXWPSSGNPHHQLAI 180
SC CL++LGD+ARY+ + +S R PS+G P++QLAI
Sbjct: 103 SSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQLV----------PSNGQPYNQLAI 152
Query: 181 LASYSSDELVAVYRYFRSLAVDSPFSTARDNLIVAFEKNRQSYSQM 226
LAS D L ++ Y RS+AV PF A NL A K +S ++
Sbjct: 153 LASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRDEV 198
Score = 102 (41.0 bits), Expect = 4.6e-21, Sum P(5) = 4.6e-21
Identities = 64/232 (27%), Positives = 94/232 (40%)
Query: 254 ASKDADMETSAVKESVSGVQEK--LKAFCTRFVRLNGILFTRTSLETFAEVLALVSSGLC 311
AS + S ES V+ K + F F++ +G ++ SLE S L
Sbjct: 180 ASTNLQKALSKALESRDEVKTKWGVSDFIKAFIKFHGHVYLSKSLEKL--------SPLR 231
Query: 312 ELLSSGPEEELNFGSDANENALFIVRLVSILIFTVHNLK---KENENQTYAEIVQRAVLL 368
E L + L F N L V ++++ F +H+L+ E E TY++ Q L
Sbjct: 232 EKLEE-QFKRLLFQKAFNSQQLVHVTVINL--FQLHHLRDFSNETEQHTYSQDEQ---LC 285
Query: 369 QNAFTAVFELMGHIIERC-MQLSDPSSSYL---LPGVLVFVEWLACYPDIASGSDADERQ 424
A+F I+ +C +Q SY LP V V ++WL P + + DERQ
Sbjct: 286 WTQLLALFMSFLGILCKCPLQNESQEESYNAYPLPAVKVSMDWLRLRPRVFQEAVVDERQ 345
Query: 425 ATVRSNFWNQCISFLNKILSLGPMSVADDEDLTCFFNMSRYDEAETENRLAL 476
W IS LN S P +EDL+ +E E + LAL
Sbjct: 346 Y-----IWPWLISLLN---SFHP----HEEDLSSISATPLPEEFELQGFLAL 385
Score = 86 (35.3 bits), Expect = 4.6e-21, Sum P(5) = 4.6e-21
Identities = 33/99 (33%), Positives = 54/99 (54%)
Query: 478 EDIELRGFLPLLPAQTILDFSRKISFGGDGNKE---RKDRVKRIFAAGKALANVIMVDQK 534
E+ EL+GFL L P+ LDFS+ G G+KE R+ R +R+ + GK +A D +
Sbjct: 375 EEFELQGFLALRPSFRNLDFSKGHQ-GITGDKEGQQRRIRQQRLISIGKWIA-----DNQ 428
Query: 535 P--VCFDSKVKKFVIGTEPLDDITFTSSDVSKTNDLILE 571
P + +++V K + TE + ++ +K N LIL+
Sbjct: 429 PRLIQCENEVGKLLFITE-IPELILEDPSEAKEN-LILQ 465
Score = 46 (21.3 bits), Expect = 4.6e-21, Sum P(5) = 4.6e-21
Identities = 17/54 (31%), Positives = 21/54 (38%)
Query: 782 PVRHLGPPPGFSPVPSKQVTAPISGSELTNENPLMDDYSWLDGYQLPASTKGPG 835
P+ H P F P+PS+ P T P +S GY PA PG
Sbjct: 560 PIHH---PGAFPPLPSRPGFPPP-----TYVIPPPVAFSMGSGYTFPAGVSVPG 605
Score = 40 (19.1 bits), Expect = 4.6e-21, Sum P(5) = 4.6e-21
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 865 PGKQFPAVQSHAEKQKGWQEYQ 886
P K PA+ G+Q+YQ
Sbjct: 683 PTKAVPALGKSPPHHSGFQQYQ 704
Score = 37 (18.1 bits), Expect = 3.6e-20, Sum P(5) = 3.6e-20
Identities = 9/25 (36%), Positives = 11/25 (44%)
Query: 769 AFPAGPRKSPVSRPVRHLGPPPGFS 793
AFP P + P + PP FS
Sbjct: 566 AFPPLPSRPGFPPPTYVIPPPVAFS 590
>UNIPROTKB|Q92540 [details] [associations]
symbol:SMG7 "Protein SMG7" species:9606 "Homo sapiens"
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=TAS] [GO:0006406 "mRNA export
from nucleus" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0035303 "regulation of
dephosphorylation" evidence=TAS] [GO:0051721 "protein phosphatase
2A binding" evidence=IDA] [GO:0005829 "cytosol" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0045111 "intermediate filament
cytoskeleton" evidence=IDA] Reactome:REACT_71 Reactome:REACT_21257
InterPro:IPR011990 PROSITE:PS50005 PROSITE:PS50293 GO:GO:0005829
GO:GO:0005634 GO:GO:0010467 GO:GO:0000184 EMBL:AL137800
GO:GO:0045111 Gene3D:1.25.40.10 GO:GO:0006406 GO:GO:0051721
InterPro:IPR018834 InterPro:IPR019458 Pfam:PF10374 Pfam:PF10373
GO:GO:0035303 eggNOG:NOG302147 EMBL:AL449223 EMBL:AB085674
EMBL:D87437 EMBL:BC036381 EMBL:BC052565 IPI:IPI00217494
IPI:IPI00448672 IPI:IPI00657821 RefSeq:NP_001167532.1
RefSeq:NP_775179.1 RefSeq:NP_963862.1 RefSeq:NP_963863.2
UniGene:Hs.591463 PDB:1YA0 PDBsum:1YA0 ProteinModelPortal:Q92540
SMR:Q92540 IntAct:Q92540 MINT:MINT-1413681 STRING:Q92540
PhosphoSite:Q92540 DMDM:84028262 PRIDE:Q92540
Ensembl:ENST00000347615 Ensembl:ENST00000515829 GeneID:9887
KEGG:hsa:9887 UCSC:uc001gqg.3 UCSC:uc001gqh.3 CTD:9887
GeneCards:GC01P183441 H-InvDB:HIX0001408 HGNC:HGNC:16792
HPA:HPA029350 MIM:610964 neXtProt:NX_Q92540 PharmGKB:PA25605
HOGENOM:HOG000049052 HOVERGEN:HBG056330 KO:K14409 PhylomeDB:Q92540
ChiTaRS:SMG7 EvolutionaryTrace:Q92540 GenomeRNAi:9887 NextBio:37276
ArrayExpress:Q92540 Bgee:Q92540 CleanEx:HS_SMG7
Genevestigator:Q92540 GermOnline:ENSG00000116698 Uniprot:Q92540
Length = 1137
Score = 199 (75.1 bits), Expect = 7.6e-21, Sum P(5) = 7.6e-21
Identities = 53/166 (31%), Positives = 83/166 (50%)
Query: 65 TKIRQQFKTFLSEATGFYHELILKIRAKYGLPLGNFSEDSENRIIMDKDGKKSSEVKKGL 124
++++ FL A+GFY +L+ ++ + + L + S+ II +K S+ VK
Sbjct: 85 SEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQS 144
Query: 125 VSC----HRCLIYLGDLARYKGLYGEGDSKSREXXXXXXXXXXXXXXWPSSGNPHHQLAI 180
SC CL++LGD+ARY+ + +S R PS+G P++QLAI
Sbjct: 145 SSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQLV----------PSNGQPYNQLAI 194
Query: 181 LASYSSDELVAVYRYFRSLAVDSPFSTARDNLIVAFEKNRQSYSQM 226
LAS D L ++ Y RS+AV PF A NL A K +S ++
Sbjct: 195 LASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRDEV 240
Score = 114 (45.2 bits), Expect = 7.5e-12, Sum P(5) = 7.5e-12
Identities = 40/156 (25%), Positives = 73/156 (46%)
Query: 1 MRENYEAIILEDHAFSEQHNVEYALWQLHYRRIEELRAHYSAAVSSAGSNTSQATKVPLR 60
+++ Y+ +++ D ++ VE LW H A + + G ++A P R
Sbjct: 36 LQDLYQKMLVTDLEYALDKKVEQDLWN-H--------AFKNQITTLQGQAKNRAN--PNR 84
Query: 61 SDRVTKIRQQFKTFLSEATGFYHELILKIRAKYGLPLGNFSEDSENRIIMDKDGKKSSEV 120
S+ ++ FL A+GFY +L+ ++ + + L + S+ II +K S+ V
Sbjct: 85 SE----VQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIV 140
Query: 121 KKGLVSC----HRCLIYLGDLARYKGLYGEGDSKSR 152
K SC CL++LGD+ARY+ + +S R
Sbjct: 141 KPQSSSCSYICQHCLVHLGDIARYRNQTSQAESYYR 176
Score = 102 (41.0 bits), Expect = 7.6e-21, Sum P(5) = 7.6e-21
Identities = 64/232 (27%), Positives = 94/232 (40%)
Query: 254 ASKDADMETSAVKESVSGVQEK--LKAFCTRFVRLNGILFTRTSLETFAEVLALVSSGLC 311
AS + S ES V+ K + F F++ +G ++ SLE S L
Sbjct: 222 ASTNLQKALSKALESRDEVKTKWGVSDFIKAFIKFHGHVYLSKSLEKL--------SPLR 273
Query: 312 ELLSSGPEEELNFGSDANENALFIVRLVSILIFTVHNLK---KENENQTYAEIVQRAVLL 368
E L + L F N L V ++++ F +H+L+ E E TY++ Q L
Sbjct: 274 EKLEE-QFKRLLFQKAFNSQQLVHVTVINL--FQLHHLRDFSNETEQHTYSQDEQ---LC 327
Query: 369 QNAFTAVFELMGHIIERC-MQLSDPSSSYL---LPGVLVFVEWLACYPDIASGSDADERQ 424
A+F I+ +C +Q SY LP V V ++WL P + + DERQ
Sbjct: 328 WTQLLALFMSFLGILCKCPLQNESQEESYNAYPLPAVKVSMDWLRLRPRVFQEAVVDERQ 387
Query: 425 ATVRSNFWNQCISFLNKILSLGPMSVADDEDLTCFFNMSRYDEAETENRLAL 476
W IS LN S P +EDL+ +E E + LAL
Sbjct: 388 Y-----IWPWLISLLN---SFHP----HEEDLSSISATPLPEEFELQGFLAL 427
Score = 86 (35.3 bits), Expect = 7.6e-21, Sum P(5) = 7.6e-21
Identities = 33/99 (33%), Positives = 54/99 (54%)
Query: 478 EDIELRGFLPLLPAQTILDFSRKISFGGDGNKE---RKDRVKRIFAAGKALANVIMVDQK 534
E+ EL+GFL L P+ LDFS+ G G+KE R+ R +R+ + GK +A D +
Sbjct: 417 EEFELQGFLALRPSFRNLDFSKGHQ-GITGDKEGQQRRIRQQRLISIGKWIA-----DNQ 470
Query: 535 P--VCFDSKVKKFVIGTEPLDDITFTSSDVSKTNDLILE 571
P + +++V K + TE + ++ +K N LIL+
Sbjct: 471 PRLIQCENEVGKLLFITE-IPELILEDPSEAKEN-LILQ 507
Score = 46 (21.3 bits), Expect = 7.6e-21, Sum P(5) = 7.6e-21
Identities = 17/54 (31%), Positives = 21/54 (38%)
Query: 782 PVRHLGPPPGFSPVPSKQVTAPISGSELTNENPLMDDYSWLDGYQLPASTKGPG 835
P+ H P F P+PS+ P T P +S GY PA PG
Sbjct: 648 PIHH---PGAFPPLPSRPGFPPP-----TYVIPPPVAFSMGSGYTFPAGVSVPG 693
Score = 40 (19.1 bits), Expect = 7.6e-21, Sum P(5) = 7.6e-21
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 865 PGKQFPAVQSHAEKQKGWQEYQ 886
P K PA+ G+Q+YQ
Sbjct: 771 PTKAVPALGKSPPHHSGFQQYQ 792
Score = 37 (18.1 bits), Expect = 6.0e-20, Sum P(5) = 6.0e-20
Identities = 9/25 (36%), Positives = 11/25 (44%)
Query: 769 AFPAGPRKSPVSRPVRHLGPPPGFS 793
AFP P + P + PP FS
Sbjct: 654 AFPPLPSRPGFPPPTYVIPPPVAFS 678
>UNIPROTKB|E9PCI0 [details] [associations]
symbol:SMG7 "Protein SMG7" species:9606 "Homo sapiens"
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111 "intermediate
filament cytoskeleton" evidence=IDA] InterPro:IPR011990
GO:GO:0005737 EMBL:AL137800 GO:GO:0045111 Gene3D:1.25.40.10
InterPro:IPR018834 InterPro:IPR019458 Pfam:PF10374 Pfam:PF10373
EMBL:AL449223 RefSeq:NP_001167532.1 UniGene:Hs.591463 GeneID:9887
KEGG:hsa:9887 CTD:9887 HGNC:HGNC:16792 KO:K14409 ChiTaRS:SMG7
GenomeRNAi:9887 NextBio:37276 EMBL:AL355387 EMBL:AL359876
IPI:IPI00908426 ProteinModelPortal:E9PCI0 SMR:E9PCI0
Ensembl:ENST00000508461 UCSC:uc010poc.2 ArrayExpress:E9PCI0
Bgee:E9PCI0 Uniprot:E9PCI0
Length = 1145
Score = 199 (75.1 bits), Expect = 7.9e-21, Sum P(5) = 7.9e-21
Identities = 53/166 (31%), Positives = 83/166 (50%)
Query: 65 TKIRQQFKTFLSEATGFYHELILKIRAKYGLPLGNFSEDSENRIIMDKDGKKSSEVKKGL 124
++++ FL A+GFY +L+ ++ + + L + S+ II +K S+ VK
Sbjct: 43 SEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQS 102
Query: 125 VSC----HRCLIYLGDLARYKGLYGEGDSKSREXXXXXXXXXXXXXXWPSSGNPHHQLAI 180
SC CL++LGD+ARY+ + +S R PS+G P++QLAI
Sbjct: 103 SSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQLV----------PSNGQPYNQLAI 152
Query: 181 LASYSSDELVAVYRYFRSLAVDSPFSTARDNLIVAFEKNRQSYSQM 226
LAS D L ++ Y RS+AV PF A NL A K +S ++
Sbjct: 153 LASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRDEV 198
Score = 102 (41.0 bits), Expect = 7.9e-21, Sum P(5) = 7.9e-21
Identities = 64/232 (27%), Positives = 94/232 (40%)
Query: 254 ASKDADMETSAVKESVSGVQEK--LKAFCTRFVRLNGILFTRTSLETFAEVLALVSSGLC 311
AS + S ES V+ K + F F++ +G ++ SLE S L
Sbjct: 180 ASTNLQKALSKALESRDEVKTKWGVSDFIKAFIKFHGHVYLSKSLEKL--------SPLR 231
Query: 312 ELLSSGPEEELNFGSDANENALFIVRLVSILIFTVHNLK---KENENQTYAEIVQRAVLL 368
E L + L F N L V ++++ F +H+L+ E E TY++ Q L
Sbjct: 232 EKLEE-QFKRLLFQKAFNSQQLVHVTVINL--FQLHHLRDFSNETEQHTYSQDEQ---LC 285
Query: 369 QNAFTAVFELMGHIIERC-MQLSDPSSSYL---LPGVLVFVEWLACYPDIASGSDADERQ 424
A+F I+ +C +Q SY LP V V ++WL P + + DERQ
Sbjct: 286 WTQLLALFMSFLGILCKCPLQNESQEESYNAYPLPAVKVSMDWLRLRPRVFQEAVVDERQ 345
Query: 425 ATVRSNFWNQCISFLNKILSLGPMSVADDEDLTCFFNMSRYDEAETENRLAL 476
W IS LN S P +EDL+ +E E + LAL
Sbjct: 346 Y-----IWPWLISLLN---SFHP----HEEDLSSISATPLPEEFELQGFLAL 385
Score = 86 (35.3 bits), Expect = 7.9e-21, Sum P(5) = 7.9e-21
Identities = 33/99 (33%), Positives = 54/99 (54%)
Query: 478 EDIELRGFLPLLPAQTILDFSRKISFGGDGNKE---RKDRVKRIFAAGKALANVIMVDQK 534
E+ EL+GFL L P+ LDFS+ G G+KE R+ R +R+ + GK +A D +
Sbjct: 375 EEFELQGFLALRPSFRNLDFSKGHQ-GITGDKEGQQRRIRQQRLISIGKWIA-----DNQ 428
Query: 535 P--VCFDSKVKKFVIGTEPLDDITFTSSDVSKTNDLILE 571
P + +++V K + TE + ++ +K N LIL+
Sbjct: 429 PRLIQCENEVGKLLFITE-IPELILEDPSEAKEN-LILQ 465
Score = 46 (21.3 bits), Expect = 7.9e-21, Sum P(5) = 7.9e-21
Identities = 17/54 (31%), Positives = 21/54 (38%)
Query: 782 PVRHLGPPPGFSPVPSKQVTAPISGSELTNENPLMDDYSWLDGYQLPASTKGPG 835
P+ H P F P+PS+ P T P +S GY PA PG
Sbjct: 606 PIHH---PGAFPPLPSRPGFPPP-----TYVIPPPVAFSMGSGYTFPAGVSVPG 651
Score = 40 (19.1 bits), Expect = 7.9e-21, Sum P(5) = 7.9e-21
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 865 PGKQFPAVQSHAEKQKGWQEYQ 886
P K PA+ G+Q+YQ
Sbjct: 729 PTKAVPALGKSPPHHSGFQQYQ 750
Score = 37 (18.1 bits), Expect = 6.3e-20, Sum P(5) = 6.3e-20
Identities = 9/25 (36%), Positives = 11/25 (44%)
Query: 769 AFPAGPRKSPVSRPVRHLGPPPGFS 793
AFP P + P + PP FS
Sbjct: 612 AFPPLPSRPGFPPPTYVIPPPVAFS 636
Score = 37 (18.1 bits), Expect = 3.8e-10, Sum P(2) = 3.8e-10
Identities = 8/13 (61%), Positives = 8/13 (61%)
Query: 387 MQLSDPSSSYLLP 399
M DP SS LLP
Sbjct: 869 MPFEDPKSSPLLP 881
>UNIPROTKB|F1S660 [details] [associations]
symbol:SMG7 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045111 "intermediate filament cytoskeleton"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR011990 GO:GO:0005737 GO:GO:0045111 Gene3D:1.25.40.10
InterPro:IPR018834 InterPro:IPR019458 Pfam:PF10374 Pfam:PF10373
GeneTree:ENSGT00560000077120 OMA:PASSDHS EMBL:CU570827
EMBL:AEMK01192395 EMBL:CU914356 Ensembl:ENSSSCT00000016948
Uniprot:F1S660
Length = 1137
Score = 199 (75.1 bits), Expect = 8.7e-21, Sum P(4) = 8.7e-21
Identities = 53/166 (31%), Positives = 83/166 (50%)
Query: 65 TKIRQQFKTFLSEATGFYHELILKIRAKYGLPLGNFSEDSENRIIMDKDGKKSSEVKKGL 124
++++ FL A+GFY +L+ ++ + + L + S+ II +K S+ VK
Sbjct: 85 SEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQS 144
Query: 125 VSC----HRCLIYLGDLARYKGLYGEGDSKSREXXXXXXXXXXXXXXWPSSGNPHHQLAI 180
SC CL++LGD+ARY+ + +S R PS+G P++QLAI
Sbjct: 145 SSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQLV----------PSNGQPYNQLAI 194
Query: 181 LASYSSDELVAVYRYFRSLAVDSPFSTARDNLIVAFEKNRQSYSQM 226
LAS D L ++ Y RS+AV PF A NL A K +S ++
Sbjct: 195 LASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRDEV 240
Score = 95 (38.5 bits), Expect = 8.7e-21, Sum P(4) = 8.7e-21
Identities = 63/232 (27%), Positives = 94/232 (40%)
Query: 254 ASKDADMETSAVKESVSGVQEK--LKAFCTRFVRLNGILFTRTSLETFAEVLALVSSGLC 311
AS + S ES V+ K + F F++ +G ++ SLE S L
Sbjct: 222 ASTNLQKALSKALESRDEVKTKWGVSDFIKAFIKFHGHVYLSKSLEKL--------SPLR 273
Query: 312 ELLSSGPEEELNFGSDANENALFIVRLVSILIFTVHNLK---KENENQTYAEIVQRAVLL 368
E L + L F N L V ++++ F +H+L+ E E +Y++ Q L
Sbjct: 274 EKLEE-QFKRLLFQKAFNSQQLVHVTVINL--FQLHHLRDFSNETEQHSYSQDEQ---LC 327
Query: 369 QNAFTAVFELMGHIIERC-MQLSDPSSSYL---LPGVLVFVEWLACYPDIASGSDADERQ 424
A+F I+ +C +Q SY LP V V ++WL P + + DERQ
Sbjct: 328 WTQLLALFMSFLGILCKCPLQNKSQEESYNAYPLPAVKVSMDWLRLRPRVFQEAVVDERQ 387
Query: 425 ATVRSNFWNQCISFLNKILSLGPMSVADDEDLTCFFNMSRYDEAETENRLAL 476
W IS LN S P +EDL+ +E E + LAL
Sbjct: 388 Y-----IWPWLISLLN---SFHP----HEEDLSSTNATPLPEEFELQGFLAL 427
Score = 91 (37.1 bits), Expect = 8.7e-21, Sum P(4) = 8.7e-21
Identities = 35/111 (31%), Positives = 59/111 (53%)
Query: 466 DEAETENRLALWEDIELRGFLPLLPAQTILDFSRKISFGGDGNKE---RKDRVKRIFAAG 522
++ + N L E+ EL+GFL L P+ LDFS+ G G+KE R+ R +R+ + G
Sbjct: 405 EDLSSTNATPLPEEFELQGFLALRPSFRNLDFSKGHQ-GITGDKEGQQRQIRQQRLISIG 463
Query: 523 KALANVIMVDQKP--VCFDSKVKKFVIGTEPLDDITFTSSDVSKTNDLILE 571
K +A D +P + +++V K + TE + ++ +K N LIL+
Sbjct: 464 KWIA-----DNQPRLIQCENEVGKLLFITE-IPELILEDPSEAKEN-LILQ 507
Score = 46 (21.3 bits), Expect = 8.7e-21, Sum P(4) = 8.7e-21
Identities = 17/54 (31%), Positives = 21/54 (38%)
Query: 782 PVRHLGPPPGFSPVPSKQVTAPISGSELTNENPLMDDYSWLDGYQLPASTKGPG 835
P+ H P F P+PS+ P T P +S GY PA PG
Sbjct: 648 PIHH---PGAFPPLPSRPGFPPP-----TYVIPPPVAFSMGSGYTFPAGVSVPG 693
Score = 43 (20.2 bits), Expect = 6.1e-16, Sum P(4) = 6.1e-16
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 502 SFGGDGNKERKDRVKRIFAAGKALANVIMVDQKPVC-FDSKVK 543
S DGN +K + + G+ L+N +KPV F +K
Sbjct: 514 SLAADGNPG----LKSVLSTGRNLSNNCDTGEKPVVTFKENIK 552
Score = 37 (18.1 bits), Expect = 7.1e-20, Sum P(4) = 7.1e-20
Identities = 9/25 (36%), Positives = 11/25 (44%)
Query: 769 AFPAGPRKSPVSRPVRHLGPPPGFS 793
AFP P + P + PP FS
Sbjct: 654 AFPPLPSRPGFPPPTYVIPPPVAFS 678
Score = 37 (18.1 bits), Expect = 3.8e-10, Sum P(2) = 3.8e-10
Identities = 6/16 (37%), Positives = 11/16 (68%)
Query: 905 INGNQFTPLPEQYQGQ 920
++ TPLPE+++ Q
Sbjct: 407 LSSTNATPLPEEFELQ 422
>UNIPROTKB|E9PD50 [details] [associations]
symbol:SMG7 "Protein SMG7" species:9606 "Homo sapiens"
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111 "intermediate
filament cytoskeleton" evidence=IDA] InterPro:IPR011990
GO:GO:0005737 EMBL:AL137800 GO:GO:0045111 Gene3D:1.25.40.10
InterPro:IPR018834 InterPro:IPR019458 Pfam:PF10374 Pfam:PF10373
EMBL:AL449223 HGNC:HGNC:16792 ChiTaRS:SMG7 EMBL:AL355387
EMBL:AL359876 IPI:IPI00968194 ProteinModelPortal:E9PD50 SMR:E9PD50
Ensembl:ENST00000367537 UCSC:uc010pob.2 ArrayExpress:E9PD50
Bgee:E9PD50 Uniprot:E9PD50
Length = 1170
Score = 199 (75.1 bits), Expect = 9.0e-21, Sum P(5) = 9.0e-21
Identities = 53/166 (31%), Positives = 83/166 (50%)
Query: 65 TKIRQQFKTFLSEATGFYHELILKIRAKYGLPLGNFSEDSENRIIMDKDGKKSSEVKKGL 124
++++ FL A+GFY +L+ ++ + + L + S+ II +K S+ VK
Sbjct: 114 SEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQS 173
Query: 125 VSC----HRCLIYLGDLARYKGLYGEGDSKSREXXXXXXXXXXXXXXWPSSGNPHHQLAI 180
SC CL++LGD+ARY+ + +S R PS+G P++QLAI
Sbjct: 174 SSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQLV----------PSNGQPYNQLAI 223
Query: 181 LASYSSDELVAVYRYFRSLAVDSPFSTARDNLIVAFEKNRQSYSQM 226
LAS D L ++ Y RS+AV PF A NL A K +S ++
Sbjct: 224 LASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRDEV 269
Score = 114 (45.2 bits), Expect = 8.8e-12, Sum P(5) = 8.8e-12
Identities = 40/156 (25%), Positives = 73/156 (46%)
Query: 1 MRENYEAIILEDHAFSEQHNVEYALWQLHYRRIEELRAHYSAAVSSAGSNTSQATKVPLR 60
+++ Y+ +++ D ++ VE LW H A + + G ++A P R
Sbjct: 65 LQDLYQKMLVTDLEYALDKKVEQDLWN-H--------AFKNQITTLQGQAKNRAN--PNR 113
Query: 61 SDRVTKIRQQFKTFLSEATGFYHELILKIRAKYGLPLGNFSEDSENRIIMDKDGKKSSEV 120
S+ ++ FL A+GFY +L+ ++ + + L + S+ II +K S+ V
Sbjct: 114 SE----VQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIV 169
Query: 121 KKGLVSC----HRCLIYLGDLARYKGLYGEGDSKSR 152
K SC CL++LGD+ARY+ + +S R
Sbjct: 170 KPQSSSCSYICQHCLVHLGDIARYRNQTSQAESYYR 205
Score = 102 (41.0 bits), Expect = 9.0e-21, Sum P(5) = 9.0e-21
Identities = 64/232 (27%), Positives = 94/232 (40%)
Query: 254 ASKDADMETSAVKESVSGVQEK--LKAFCTRFVRLNGILFTRTSLETFAEVLALVSSGLC 311
AS + S ES V+ K + F F++ +G ++ SLE S L
Sbjct: 251 ASTNLQKALSKALESRDEVKTKWGVSDFIKAFIKFHGHVYLSKSLEKL--------SPLR 302
Query: 312 ELLSSGPEEELNFGSDANENALFIVRLVSILIFTVHNLK---KENENQTYAEIVQRAVLL 368
E L + L F N L V ++++ F +H+L+ E E TY++ Q L
Sbjct: 303 EKLEE-QFKRLLFQKAFNSQQLVHVTVINL--FQLHHLRDFSNETEQHTYSQDEQ---LC 356
Query: 369 QNAFTAVFELMGHIIERC-MQLSDPSSSYL---LPGVLVFVEWLACYPDIASGSDADERQ 424
A+F I+ +C +Q SY LP V V ++WL P + + DERQ
Sbjct: 357 WTQLLALFMSFLGILCKCPLQNESQEESYNAYPLPAVKVSMDWLRLRPRVFQEAVVDERQ 416
Query: 425 ATVRSNFWNQCISFLNKILSLGPMSVADDEDLTCFFNMSRYDEAETENRLAL 476
W IS LN S P +EDL+ +E E + LAL
Sbjct: 417 Y-----IWPWLISLLN---SFHP----HEEDLSSISATPLPEEFELQGFLAL 456
Score = 86 (35.3 bits), Expect = 9.0e-21, Sum P(5) = 9.0e-21
Identities = 33/99 (33%), Positives = 54/99 (54%)
Query: 478 EDIELRGFLPLLPAQTILDFSRKISFGGDGNKE---RKDRVKRIFAAGKALANVIMVDQK 534
E+ EL+GFL L P+ LDFS+ G G+KE R+ R +R+ + GK +A D +
Sbjct: 446 EEFELQGFLALRPSFRNLDFSKGHQ-GITGDKEGQQRRIRQQRLISIGKWIA-----DNQ 499
Query: 535 P--VCFDSKVKKFVIGTEPLDDITFTSSDVSKTNDLILE 571
P + +++V K + TE + ++ +K N LIL+
Sbjct: 500 PRLIQCENEVGKLLFITE-IPELILEDPSEAKEN-LILQ 536
Score = 46 (21.3 bits), Expect = 9.0e-21, Sum P(5) = 9.0e-21
Identities = 17/54 (31%), Positives = 21/54 (38%)
Query: 782 PVRHLGPPPGFSPVPSKQVTAPISGSELTNENPLMDDYSWLDGYQLPASTKGPG 835
P+ H P F P+PS+ P T P +S GY PA PG
Sbjct: 631 PIHH---PGAFPPLPSRPGFPPP-----TYVIPPPVAFSMGSGYTFPAGVSVPG 676
Score = 40 (19.1 bits), Expect = 9.0e-21, Sum P(5) = 9.0e-21
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 865 PGKQFPAVQSHAEKQKGWQEYQ 886
P K PA+ G+Q+YQ
Sbjct: 754 PTKAVPALGKSPPHHSGFQQYQ 775
Score = 37 (18.1 bits), Expect = 7.2e-20, Sum P(5) = 7.2e-20
Identities = 9/25 (36%), Positives = 11/25 (44%)
Query: 769 AFPAGPRKSPVSRPVRHLGPPPGFS 793
AFP P + P + PP FS
Sbjct: 637 AFPPLPSRPGFPPPTYVIPPPVAFS 661
Score = 37 (18.1 bits), Expect = 4.0e-10, Sum P(2) = 4.0e-10
Identities = 8/13 (61%), Positives = 8/13 (61%)
Query: 387 MQLSDPSSSYLLP 399
M DP SS LLP
Sbjct: 894 MPFEDPKSSPLLP 906
>UNIPROTKB|E9PEH2 [details] [associations]
symbol:SMG7 "Protein SMG7" species:9606 "Homo sapiens"
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111 "intermediate
filament cytoskeleton" evidence=IDA] InterPro:IPR011990
GO:GO:0005737 EMBL:AL137800 GO:GO:0045111 Gene3D:1.25.40.10
InterPro:IPR018834 InterPro:IPR019458 Pfam:PF10374 Pfam:PF10373
EMBL:AL449223 RefSeq:NP_963863.2 UniGene:Hs.591463 GeneID:9887
KEGG:hsa:9887 CTD:9887 HGNC:HGNC:16792 KO:K14409 ChiTaRS:SMG7
GenomeRNAi:9887 NextBio:37276 OMA:PASSDHS EMBL:AL355387
EMBL:AL359876 IPI:IPI01008861 ProteinModelPortal:E9PEH2 SMR:E9PEH2
PRIDE:E9PEH2 Ensembl:ENST00000507469 UCSC:uc001gqf.3
ArrayExpress:E9PEH2 Bgee:E9PEH2 Uniprot:E9PEH2
Length = 1178
Score = 199 (75.1 bits), Expect = 9.4e-21, Sum P(5) = 9.4e-21
Identities = 53/166 (31%), Positives = 83/166 (50%)
Query: 65 TKIRQQFKTFLSEATGFYHELILKIRAKYGLPLGNFSEDSENRIIMDKDGKKSSEVKKGL 124
++++ FL A+GFY +L+ ++ + + L + S+ II +K S+ VK
Sbjct: 85 SEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQS 144
Query: 125 VSC----HRCLIYLGDLARYKGLYGEGDSKSREXXXXXXXXXXXXXXWPSSGNPHHQLAI 180
SC CL++LGD+ARY+ + +S R PS+G P++QLAI
Sbjct: 145 SSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQLV----------PSNGQPYNQLAI 194
Query: 181 LASYSSDELVAVYRYFRSLAVDSPFSTARDNLIVAFEKNRQSYSQM 226
LAS D L ++ Y RS+AV PF A NL A K +S ++
Sbjct: 195 LASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRDEV 240
Score = 114 (45.2 bits), Expect = 9.1e-12, Sum P(5) = 9.1e-12
Identities = 40/156 (25%), Positives = 73/156 (46%)
Query: 1 MRENYEAIILEDHAFSEQHNVEYALWQLHYRRIEELRAHYSAAVSSAGSNTSQATKVPLR 60
+++ Y+ +++ D ++ VE LW H A + + G ++A P R
Sbjct: 36 LQDLYQKMLVTDLEYALDKKVEQDLWN-H--------AFKNQITTLQGQAKNRAN--PNR 84
Query: 61 SDRVTKIRQQFKTFLSEATGFYHELILKIRAKYGLPLGNFSEDSENRIIMDKDGKKSSEV 120
S+ ++ FL A+GFY +L+ ++ + + L + S+ II +K S+ V
Sbjct: 85 SE----VQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIV 140
Query: 121 KKGLVSC----HRCLIYLGDLARYKGLYGEGDSKSR 152
K SC CL++LGD+ARY+ + +S R
Sbjct: 141 KPQSSSCSYICQHCLVHLGDIARYRNQTSQAESYYR 176
Score = 102 (41.0 bits), Expect = 9.4e-21, Sum P(5) = 9.4e-21
Identities = 64/232 (27%), Positives = 94/232 (40%)
Query: 254 ASKDADMETSAVKESVSGVQEK--LKAFCTRFVRLNGILFTRTSLETFAEVLALVSSGLC 311
AS + S ES V+ K + F F++ +G ++ SLE S L
Sbjct: 222 ASTNLQKALSKALESRDEVKTKWGVSDFIKAFIKFHGHVYLSKSLEKL--------SPLR 273
Query: 312 ELLSSGPEEELNFGSDANENALFIVRLVSILIFTVHNLK---KENENQTYAEIVQRAVLL 368
E L + L F N L V ++++ F +H+L+ E E TY++ Q L
Sbjct: 274 EKLEE-QFKRLLFQKAFNSQQLVHVTVINL--FQLHHLRDFSNETEQHTYSQDEQ---LC 327
Query: 369 QNAFTAVFELMGHIIERC-MQLSDPSSSYL---LPGVLVFVEWLACYPDIASGSDADERQ 424
A+F I+ +C +Q SY LP V V ++WL P + + DERQ
Sbjct: 328 WTQLLALFMSFLGILCKCPLQNESQEESYNAYPLPAVKVSMDWLRLRPRVFQEAVVDERQ 387
Query: 425 ATVRSNFWNQCISFLNKILSLGPMSVADDEDLTCFFNMSRYDEAETENRLAL 476
W IS LN S P +EDL+ +E E + LAL
Sbjct: 388 Y-----IWPWLISLLN---SFHP----HEEDLSSISATPLPEEFELQGFLAL 427
Score = 86 (35.3 bits), Expect = 9.4e-21, Sum P(5) = 9.4e-21
Identities = 33/99 (33%), Positives = 54/99 (54%)
Query: 478 EDIELRGFLPLLPAQTILDFSRKISFGGDGNKE---RKDRVKRIFAAGKALANVIMVDQK 534
E+ EL+GFL L P+ LDFS+ G G+KE R+ R +R+ + GK +A D +
Sbjct: 417 EEFELQGFLALRPSFRNLDFSKGHQ-GITGDKEGQQRRIRQQRLISIGKWIA-----DNQ 470
Query: 535 P--VCFDSKVKKFVIGTEPLDDITFTSSDVSKTNDLILE 571
P + +++V K + TE + ++ +K N LIL+
Sbjct: 471 PRLIQCENEVGKLLFITE-IPELILEDPSEAKEN-LILQ 507
Score = 46 (21.3 bits), Expect = 9.4e-21, Sum P(5) = 9.4e-21
Identities = 17/54 (31%), Positives = 21/54 (38%)
Query: 782 PVRHLGPPPGFSPVPSKQVTAPISGSELTNENPLMDDYSWLDGYQLPASTKGPG 835
P+ H P F P+PS+ P T P +S GY PA PG
Sbjct: 602 PIHH---PGAFPPLPSRPGFPPP-----TYVIPPPVAFSMGSGYTFPAGVSVPG 647
Score = 40 (19.1 bits), Expect = 9.4e-21, Sum P(5) = 9.4e-21
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 865 PGKQFPAVQSHAEKQKGWQEYQ 886
P K PA+ G+Q+YQ
Sbjct: 725 PTKAVPALGKSPPHHSGFQQYQ 746
Score = 37 (18.1 bits), Expect = 7.5e-20, Sum P(5) = 7.5e-20
Identities = 9/25 (36%), Positives = 11/25 (44%)
Query: 769 AFPAGPRKSPVSRPVRHLGPPPGFS 793
AFP P + P + PP FS
Sbjct: 608 AFPPLPSRPGFPPPTYVIPPPVAFS 632
Score = 37 (18.1 bits), Expect = 4.1e-10, Sum P(2) = 4.1e-10
Identities = 8/13 (61%), Positives = 8/13 (61%)
Query: 387 MQLSDPSSSYLLP 399
M DP SS LLP
Sbjct: 865 MPFEDPKSSPLLP 877
>UNIPROTKB|F1N4M5 [details] [associations]
symbol:SMG7 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0045111 "intermediate filament cytoskeleton"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR011990 GO:GO:0005737 GO:GO:0045111 Gene3D:1.25.40.10
InterPro:IPR018834 InterPro:IPR019458 Pfam:PF10374 Pfam:PF10373
GeneTree:ENSGT00560000077120 OMA:PASSDHS EMBL:DAAA02043573
EMBL:DAAA02043574 IPI:IPI00730025 Ensembl:ENSBTAT00000033964
Uniprot:F1N4M5
Length = 1166
Score = 199 (75.1 bits), Expect = 1.1e-20, Sum P(5) = 1.1e-20
Identities = 53/166 (31%), Positives = 83/166 (50%)
Query: 65 TKIRQQFKTFLSEATGFYHELILKIRAKYGLPLGNFSEDSENRIIMDKDGKKSSEVKKGL 124
++++ FL A+GFY +L+ ++ + + L + S+ II +K S+ VK
Sbjct: 114 SEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQS 173
Query: 125 VSC----HRCLIYLGDLARYKGLYGEGDSKSREXXXXXXXXXXXXXXWPSSGNPHHQLAI 180
SC CL++LGD+ARY+ + +S R PS+G P++QLAI
Sbjct: 174 SSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQLV----------PSNGQPYNQLAI 223
Query: 181 LASYSSDELVAVYRYFRSLAVDSPFSTARDNLIVAFEKNRQSYSQM 226
LAS D L ++ Y RS+AV PF A NL A K +S ++
Sbjct: 224 LASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRDEV 269
Score = 114 (45.2 bits), Expect = 1.1e-11, Sum P(5) = 1.1e-11
Identities = 40/156 (25%), Positives = 73/156 (46%)
Query: 1 MRENYEAIILEDHAFSEQHNVEYALWQLHYRRIEELRAHYSAAVSSAGSNTSQATKVPLR 60
+++ Y+ +++ D ++ VE LW H A + + G ++A P R
Sbjct: 65 LQDLYQKMLVTDLEYALDKKVEQDLWN-H--------AFKNQITTLQGQAKNRAN--PNR 113
Query: 61 SDRVTKIRQQFKTFLSEATGFYHELILKIRAKYGLPLGNFSEDSENRIIMDKDGKKSSEV 120
S+ ++ FL A+GFY +L+ ++ + + L + S+ II +K S+ V
Sbjct: 114 SE----VQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIV 169
Query: 121 KKGLVSC----HRCLIYLGDLARYKGLYGEGDSKSR 152
K SC CL++LGD+ARY+ + +S R
Sbjct: 170 KPQSSSCSYICQHCLVHLGDIARYRNQTSQAESYYR 205
Score = 95 (38.5 bits), Expect = 1.1e-20, Sum P(5) = 1.1e-20
Identities = 63/232 (27%), Positives = 94/232 (40%)
Query: 254 ASKDADMETSAVKESVSGVQEK--LKAFCTRFVRLNGILFTRTSLETFAEVLALVSSGLC 311
AS + S ES V+ K + F F++ +G ++ SLE S L
Sbjct: 251 ASTNLQKALSKALESRDEVKTKWGVSDFIKAFIKFHGHVYLSKSLEKL--------SPLR 302
Query: 312 ELLSSGPEEELNFGSDANENALFIVRLVSILIFTVHNLK---KENENQTYAEIVQRAVLL 368
E L + L F N L V ++++ F +H+L+ E E +Y++ Q L
Sbjct: 303 EKLEE-QFKRLLFQKAFNSQQLVHVTVINL--FQLHHLRDFSNETEQHSYSQDEQ---LC 356
Query: 369 QNAFTAVFELMGHIIERC-MQLSDPSSSYL---LPGVLVFVEWLACYPDIASGSDADERQ 424
A+F I+ +C +Q SY LP V V ++WL P + + DERQ
Sbjct: 357 WTQLLALFMSFLGILCKCPLQNKSQEESYNAYPLPAVKVSMDWLRLRPRVFQEAVVDERQ 416
Query: 425 ATVRSNFWNQCISFLNKILSLGPMSVADDEDLTCFFNMSRYDEAETENRLAL 476
W IS LN S P +EDL+ +E E + LAL
Sbjct: 417 Y-----IWPWLISLLN---SFHP----HEEDLSSTNATPLPEEFELQGFLAL 456
Score = 92 (37.4 bits), Expect = 1.1e-20, Sum P(5) = 1.1e-20
Identities = 35/112 (31%), Positives = 60/112 (53%)
Query: 466 DEAETENRLALWEDIELRGFLPLLPAQTILDFSRKISFGGDGNKE---RKDRVKRIFAAG 522
++ + N L E+ EL+GFL L P+ LDFS+ G G+KE R+ R +R+ + G
Sbjct: 434 EDLSSTNATPLPEEFELQGFLALRPSFRNLDFSKGHQ-GITGDKEGQQRQIRQQRLISIG 492
Query: 523 KALANVIMVDQKP--VCFDSKVKKFVIGTEPLDDITFTSSDVSKTNDLILEN 572
K +A D +P + +++V K + TE + ++ +K N LIL++
Sbjct: 493 KWIA-----DNQPRLIQCENEVGKLLFITE-IPELILEDPSEAKEN-LILQD 537
Score = 46 (21.3 bits), Expect = 1.1e-20, Sum P(5) = 1.1e-20
Identities = 17/54 (31%), Positives = 21/54 (38%)
Query: 782 PVRHLGPPPGFSPVPSKQVTAPISGSELTNENPLMDDYSWLDGYQLPASTKGPG 835
P+ H P F P+PS+ P T P +S GY PA PG
Sbjct: 677 PIHH---PGAFPPLPSRPGFPPP-----TYVIPPPVAFSMGSGYTFPAGVSVPG 722
Score = 40 (19.1 bits), Expect = 1.1e-20, Sum P(5) = 1.1e-20
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 865 PGKQFPAVQSHAEKQKGWQEYQ 886
P K PA+ G+Q+YQ
Sbjct: 800 PTKAVPALGKSPPHHSGFQQYQ 821
Score = 39 (18.8 bits), Expect = 2.1e-15, Sum P(5) = 2.1e-15
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 502 SFGGDGNKERKDRVKRIFAAGKALANVIMVDQKPVC-FDSKVK 543
S DGN +K + + G+ L+N +KPV F +K
Sbjct: 543 SLAADGNPG----LKSVLSTGRNLSNNCDPGEKPVVTFKENMK 581
Score = 37 (18.1 bits), Expect = 8.8e-20, Sum P(5) = 8.8e-20
Identities = 9/25 (36%), Positives = 11/25 (44%)
Query: 769 AFPAGPRKSPVSRPVRHLGPPPGFS 793
AFP P + P + PP FS
Sbjct: 683 AFPPLPSRPGFPPPTYVIPPPVAFS 707
Score = 37 (18.1 bits), Expect = 4.0e-10, Sum P(2) = 4.0e-10
Identities = 6/16 (37%), Positives = 11/16 (68%)
Query: 905 INGNQFTPLPEQYQGQ 920
++ TPLPE+++ Q
Sbjct: 436 LSSTNATPLPEEFELQ 451
>UNIPROTKB|F1NG37 [details] [associations]
symbol:Gga.53209 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IEA]
InterPro:IPR011990 GO:GO:0005737 GO:GO:0045111 Gene3D:1.25.40.10
InterPro:IPR018834 InterPro:IPR019458 Pfam:PF10374 Pfam:PF10373
GeneTree:ENSGT00560000077120 OMA:PASSDHS EMBL:AADN02034188
EMBL:AADN02034189 EMBL:AADN02034190 IPI:IPI00578039
Ensembl:ENSGALT00000007437 Uniprot:F1NG37
Length = 1142
Score = 199 (75.1 bits), Expect = 1.2e-19, Sum P(4) = 1.2e-19
Identities = 53/166 (31%), Positives = 83/166 (50%)
Query: 65 TKIRQQFKTFLSEATGFYHELILKIRAKYGLPLGNFSEDSENRIIMDKDGKKSSEVKKGL 124
++++ FL A+GFY +L+ ++ + + L + S+ II +K S+ VK
Sbjct: 86 SEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQS 145
Query: 125 VSC----HRCLIYLGDLARYKGLYGEGDSKSREXXXXXXXXXXXXXXWPSSGNPHHQLAI 180
SC CL++LGD+ARY+ + +S R PS+G P++QLAI
Sbjct: 146 SSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQLV----------PSNGQPYNQLAI 195
Query: 181 LASYSSDELVAVYRYFRSLAVDSPFSTARDNLIVAFEKNRQSYSQM 226
LAS D L ++ Y RS+AV PF A NL A K +S ++
Sbjct: 196 LASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRDEV 241
Score = 114 (45.2 bits), Expect = 1.2e-10, Sum P(4) = 1.2e-10
Identities = 40/156 (25%), Positives = 73/156 (46%)
Query: 1 MRENYEAIILEDHAFSEQHNVEYALWQLHYRRIEELRAHYSAAVSSAGSNTSQATKVPLR 60
+++ Y+ +++ D ++ VE LW H A + + G ++A P R
Sbjct: 37 LQDLYQKMLVTDLEYALDKKVEQDLWN-H--------AFKNQITTLQGQAKNRAN--PNR 85
Query: 61 SDRVTKIRQQFKTFLSEATGFYHELILKIRAKYGLPLGNFSEDSENRIIMDKDGKKSSEV 120
S+ ++ FL A+GFY +L+ ++ + + L + S+ II +K S+ V
Sbjct: 86 SE----VQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIV 141
Query: 121 KKGLVSC----HRCLIYLGDLARYKGLYGEGDSKSR 152
K SC CL++LGD+ARY+ + +S R
Sbjct: 142 KPQSSSCSYICQHCLVHLGDIARYRNQTSQAESYYR 177
Score = 92 (37.4 bits), Expect = 1.2e-19, Sum P(4) = 1.2e-19
Identities = 51/196 (26%), Positives = 81/196 (41%)
Query: 254 ASKDADMETSAVKESVSGVQEK--LKAFCTRFVRLNGILFTRTSLETFAEVLALVSSGLC 311
AS + S ES V+ + + F F++ +G ++ SLE S L
Sbjct: 223 ASTNLQKALSKALESRDEVKTRWSVSDFIKAFIKFHGHVYLSKSLEKL--------SPLR 274
Query: 312 ELLSSGPEEELNFGSDANENALFIVRLVSILIFTVHNLK---KENENQTYAEIVQRAVLL 368
E L + L F N L V + I +F +H+L+ E E +Y++ Q L
Sbjct: 275 EKLEE-QFKRLLFQKAFNSQQL--VHITVINLFQLHHLRDFSNETEQHSYSQDEQ---LC 328
Query: 369 QNAFTAVFELMGHIIERC-MQ---LSDPSSSYLLPGVLVFVEWLACYPDIASGSDADERQ 424
A+F ++ +C +Q D ++Y LP V V ++WL P + + DER+
Sbjct: 329 WTQLLALFMSFLGVLCKCPLQNDYQEDSGAAYPLPAVKVSMDWLKLRPSVFQEAVVDERR 388
Query: 425 ATVRSNFWNQCISFLN 440
W IS LN
Sbjct: 389 Y-----IWPWLISLLN 399
Score = 82 (33.9 bits), Expect = 1.2e-19, Sum P(4) = 1.2e-19
Identities = 28/89 (31%), Positives = 47/89 (52%)
Query: 466 DEAETENRLALWEDIELRGFLPLLPAQTILDFSR-KISFGGDGN-KERKDRVKRIFAAGK 523
++ N L E+ EL+GFL L P+ LDFS+ + GD ++R+ R +R+ GK
Sbjct: 406 EDLSNNNATPLPEEFELQGFLALRPSFRNLDFSKGHQAITGDKEGQQRRIRQQRLIFTGK 465
Query: 524 ALANVIMVDQKP--VCFDSKVKKFVIGTE 550
+A D +P + +++V K + TE
Sbjct: 466 WIA-----DNQPRLIQCENEVGKLLFLTE 489
Score = 47 (21.6 bits), Expect = 1.2e-19, Sum P(4) = 1.2e-19
Identities = 17/54 (31%), Positives = 21/54 (38%)
Query: 782 PVRHLGPPPGFSPVPSKQVTAPISGSELTNENPLMDDYSWLDGYQLPASTKGPG 835
P+ H P F P+PS+ P T P +S GY PA PG
Sbjct: 651 PIHH---PGAFPPLPSRPGFPPP-----TYVVPPPVAFSMSTGYTFPAGVSVPG 696
Score = 43 (20.2 bits), Expect = 2.2e-15, Sum P(3) = 2.2e-15
Identities = 7/16 (43%), Positives = 12/16 (75%)
Query: 905 INGNQFTPLPEQYQGQ 920
++ N TPLPE+++ Q
Sbjct: 408 LSNNNATPLPEEFELQ 423
Score = 38 (18.4 bits), Expect = 3.2e-15, Sum P(4) = 3.2e-15
Identities = 7/29 (24%), Positives = 17/29 (58%)
Query: 515 VKRIFAAGKALANVIMVDQKPVCFDSKVK 543
+K + ++G++L+N ++ V F +K
Sbjct: 524 LKSVLSSGRSLSNCDSGEKPMVTFKENIK 552
Score = 37 (18.1 bits), Expect = 1.2e-18, Sum P(4) = 1.2e-18
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 769 AFPAGPRKSPVSRPVRHLGPPP-GFS 793
AFP P + P P ++ PPP FS
Sbjct: 657 AFPPLPSR-PGFPPPTYVVPPPVAFS 681
>UNIPROTKB|E1BFK4 [details] [associations]
symbol:SMG6 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0042162 "telomeric DNA binding" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0004521 "endoribonuclease activity" evidence=IEA]
[GO:0000723 "telomere maintenance" evidence=IEA] InterPro:IPR011990
InterPro:IPR006596 GO:GO:0005829 GO:GO:0005730 Gene3D:1.25.40.10
GO:GO:0004521 GO:GO:0000723 GO:GO:0042162 SMART:SM00670
InterPro:IPR018834 InterPro:IPR019458 Pfam:PF10374 Pfam:PF10373
OMA:MRNMQQQ GeneTree:ENSGT00560000077120 EMBL:DAAA02048669
EMBL:DAAA02048670 EMBL:DAAA02048671 IPI:IPI00706461
Ensembl:ENSBTAT00000000333 Uniprot:E1BFK4
Length = 1385
Score = 202 (76.2 bits), Expect = 3.7e-18, Sum P(3) = 3.7e-18
Identities = 51/161 (31%), Positives = 83/161 (51%)
Query: 66 KIRQQFKTFLSEATGFYHELILKIRAKYGLPLGNFSEDSENRIIMDKDGKKSSEVKKGLV 125
+IR + L E + F+ L+ K++ Y L ++ + I K +K+ VK L+
Sbjct: 635 QIRNRLLELLDEGSDFFDSLLQKLQVTYKFKLEDYMD---GLAIRSKPLRKT--VKYALI 689
Query: 126 SCHRCLIYLGDLARYKGLYGEGDSKSREXXXXXXXXXXXXXXWPSSGNPHHQLAILASYS 185
S RC+I GD+ARY+ E + + P +G P++QLA+LA Y+
Sbjct: 690 SAQRCMICQGDIARYR----EQANDTANYGKARSWYLKAQHIAPKNGRPYNQLALLAVYT 745
Query: 186 SDELVAVYRYFRSLAVDSPFSTARDNLIVAFEKNRQSYSQM 226
+L AVY Y RSLA +P TA+++L+ FE+ ++ QM
Sbjct: 746 RRKLDAVYYYMRSLAASNPILTAKESLMSLFEETKRKAEQM 786
Score = 114 (45.2 bits), Expect = 3.7e-18, Sum P(3) = 3.7e-18
Identities = 70/261 (26%), Positives = 112/261 (42%)
Query: 254 ASKDADMETSAVKESVSGVQEKLKAFCTRFVRLNGILFTRTSLETFAEVLALVSSGLCEL 313
+ KD++ E S S + K F F+ +G LFTR +ETF V V L
Sbjct: 836 SGKDSEQENGLGSLSPSDLN---KRFILSFLHAHGKLFTRIGMETFPAVAEKVLKEFQVL 892
Query: 314 LSSGPEEELNFGSDANENALFIVRLVSILIFTVHNLK-KENENQTYAEIVQ-RAVLLQNA 371
L P GS +++L++I +F +HN + K+ ++ ++Q +A L A
Sbjct: 893 LQHSPSP---IGSTR------MLQLMTINMFALHNSQLKDCFSEECRSVIQEQAAALGLA 943
Query: 372 -FTAVFELMGHIIERCM--QLSDPS----------SSY------LLPGVLVFVEWLACYP 412
F+ + ++++ QLS P SS+ LLP V V+ +W+ YP
Sbjct: 944 MFSLLVRRCTYLLKESAKAQLSSPEGEEDQDDIKVSSFVPDLKELLPSVKVWSDWMLGYP 1003
Query: 413 DIASGSDAD-ERQATVRSNFWNQCISFLNKILSLGPMSVADDEDLTCFFNMSRYDEAETE 471
D + E + V + W+ F N IL+ +V E + Y + + +
Sbjct: 1004 DTWNPPPTSLELPSQVAVDVWSTLADFCN-ILT----AVNQSE-------VPLYKDPDDD 1051
Query: 472 -NRLALWEDIELRGFLPLLPA 491
L L ED L GF+PLL A
Sbjct: 1052 LTLLILEEDRLLSGFVPLLAA 1072
Score = 74 (31.1 bits), Expect = 8.7e-05, Sum P(2) = 8.7e-05
Identities = 27/99 (27%), Positives = 43/99 (43%)
Query: 5 YEAIILEDHAFSEQHNVEYALWQ-LHYRRIEELRAHYSAAVSSAGSNTSQATKVPLRSDR 63
YE IL D FS+ NV+ LW+ Y+ IE+ R Q K P +
Sbjct: 589 YERCILLDIEFSDNQNVDQILWKNAFYQVIEKFR---------------QLLKDP-NVEN 632
Query: 64 VTKIRQQFKTFLSEATGFYHELILKIRAKYGLPLGNFSE 102
+IR + L E + F+ L+ K++ Y L ++ +
Sbjct: 633 PEQIRNRLLELLDEGSDFFDSLLQKLQVTYKFKLEDYMD 671
Score = 48 (22.0 bits), Expect = 3.7e-18, Sum P(3) = 3.7e-18
Identities = 17/45 (37%), Positives = 26/45 (57%)
Query: 30 YRRIEELRAHY-SAAVSSAGSNTSQATKVPLRSDRVTKIRQQFKT 73
Y R ++ R Y + + SSAGSN S A L +D ++ R+Q +T
Sbjct: 212 YSRSDKRRNRYRTCSTSSAGSNNS-AEGAGL-TDSGSRRRRQDRT 254
Score = 41 (19.5 bits), Expect = 1.9e-17, Sum P(3) = 1.9e-17
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 31 RRIEELRAHYSAAVSSAGSNTS 52
R I L AH + +VSSAGS S
Sbjct: 372 RGILILPAHTTLSVSSAGSPES 393
>UNIPROTKB|Q86US8 [details] [associations]
symbol:SMG6 "Telomerase-binding protein EST1A" species:9606
"Homo sapiens" [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0000781 "chromosome, telomeric region" evidence=IEA]
[GO:0004521 "endoribonuclease activity" evidence=IDA;IMP;TAS]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IMP;TAS] [GO:0005829 "cytosol"
evidence=IDA;TAS] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006406
"mRNA export from nucleus" evidence=TAS] [GO:0000723 "telomere
maintenance" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0005697
"telomerase holoenzyme complex" evidence=TAS] [GO:0035303
"regulation of dephosphorylation" evidence=TAS] [GO:0042162
"telomeric DNA binding" evidence=IDA] [GO:0010467 "gene expression"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_71 Reactome:REACT_21257
InterPro:IPR011990 InterPro:IPR006596 GO:GO:0005829 GO:GO:0010467
Pathway_Interaction_DB:telomerasepathway GO:GO:0005730
GO:GO:0000184 GO:GO:0046872 Gene3D:1.25.40.10 GO:GO:0006406
GO:GO:0004521 GO:GO:0000781 GO:GO:0000723 GO:GO:0042162
SMART:SM00670 GO:GO:0005697 InterPro:IPR018834 InterPro:IPR019458
Pfam:PF10374 Pfam:PF10373 EMBL:AY145883 EMBL:AB018275 EMBL:AL133597
EMBL:AY168921 EMBL:BC064916 IPI:IPI00015793 IPI:IPI01012883
PIR:T43475 RefSeq:NP_001243756.1 RefSeq:NP_001243757.1
RefSeq:NP_060045.4 UniGene:Hs.448342 PDB:2DOK PDB:2HWW PDB:2HWX
PDBsum:2DOK PDBsum:2HWW PDBsum:2HWX ProteinModelPortal:Q86US8
SMR:Q86US8 IntAct:Q86US8 STRING:Q86US8 PhosphoSite:Q86US8
DMDM:91771922 PaxDb:Q86US8 PRIDE:Q86US8 DNASU:23293
Ensembl:ENST00000263073 Ensembl:ENST00000544865
Ensembl:ENST00000573166 GeneID:23293 KEGG:hsa:23293 UCSC:uc002fub.1
CTD:23293 GeneCards:GC17M001963 H-InvDB:HIX0013415 HGNC:HGNC:17809
HPA:HPA042932 MIM:610963 neXtProt:NX_Q86US8 PharmGKB:PA25584
eggNOG:NOG313444 HOGENOM:HOG000112402 HOVERGEN:HBG051511
InParanoid:Q86US8 KO:K11124 OMA:MRNMQQQ OrthoDB:EOG4KKZ29
PhylomeDB:Q86US8 ChiTaRS:SMG6 EvolutionaryTrace:Q86US8
GenomeRNAi:23293 NextBio:45116 ArrayExpress:Q86US8 Bgee:Q86US8
CleanEx:HS_SMG6 Genevestigator:Q86US8 GermOnline:ENSG00000070366
GO:GO:0035303 Uniprot:Q86US8
Length = 1419
Score = 206 (77.6 bits), Expect = 4.0e-17, Sum P(3) = 4.0e-17
Identities = 55/174 (31%), Positives = 87/174 (50%)
Query: 53 QATKVPLRSDRVTKIRQQFKTFLSEATGFYHELILKIRAKYGLPLGNFSEDSENRIIMDK 112
Q K P + +IR + L E + F+ L+ K++ Y L ++ + I K
Sbjct: 657 QLVKDP-NVENPEQIRNRLLELLDEGSDFFDSLLQKLQVTYKFKLEDYMD---GLAIRSK 712
Query: 113 DGKKSSEVKKGLVSCHRCLIYLGDLARYKGLYGEGDSKSREXXXXXXXXXXXXXXWPSSG 172
+K+ VK L+S RC+I GD+ARY+ E S + P +G
Sbjct: 713 PLRKT--VKYALISAQRCMICQGDIARYR----EQASDTANYGKARSWYLKAQHIAPKNG 766
Query: 173 NPHHQLAILASYSSDELVAVYRYFRSLAVDSPFSTARDNLIVAFEKNRQSYSQM 226
P++QLA+LA Y+ +L AVY Y RSLA +P TA+++L+ FE+ ++ QM
Sbjct: 767 RPYNQLALLAVYTRRKLDAVYYYMRSLAASNPILTAKESLMSLFEETKRKAEQM 820
Score = 110 (43.8 bits), Expect = 4.0e-17, Sum P(3) = 4.0e-17
Identities = 70/265 (26%), Positives = 110/265 (41%)
Query: 254 ASKDADMETSAVKESVSGVQEKLKAFCTRFVRLNGILFTRTSLETFAEVLALVSSGLCEL 313
+ KD++ E S S + K F F+ +G LFTR +ETF V V L
Sbjct: 870 SGKDSEQENGLGSLSPSDLN---KRFILSFLHAHGKLFTRIGMETFPAVAEKVLKEFQVL 926
Query: 314 LSSGPEEELNFGSDANENALFIVRLVSILIFTVHNLKKENENQTYAEIVQRAVLLQNAFT 373
L P GS +++L++I +F VHN + ++ ++E R+V+ + A
Sbjct: 927 LQHSPSP---IGSTR------MLQLMTINMFAVHNSQLKD---CFSEEC-RSVIQEQAAA 973
Query: 374 AVFELMGHIIERCM---------QLSDPS----------SSY------LLPGVLVFVEWL 408
+ ++ RC QLS P SS+ LLP V V+ +W+
Sbjct: 974 LGLAMFSLLVRRCTCLLKESAKAQLSSPEDQDDQDDIKVSSFVPDLKELLPSVKVWSDWM 1033
Query: 409 ACYPDIASGSDAD-ERQATVRSNFWNQCISFLNKILSLGPMSVADDEDLTCFFNMSRYDE 467
YPD + + + V + W+ F N IL+ +V E + Y +
Sbjct: 1034 LGYPDTWNPPPTSLDLPSHVAVDVWSTLADFCN-ILT----AVNQSE-------VPLYKD 1081
Query: 468 AETE-NRLALWEDIELRGFLPLLPA 491
+ + L L ED L GF+PLL A
Sbjct: 1082 PDDDLTLLILEEDRLLSGFVPLLAA 1106
Score = 75 (31.5 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 27/99 (27%), Positives = 43/99 (43%)
Query: 5 YEAIILEDHAFSEQHNVEYALWQ-LHYRRIEELRAHYSAAVSSAGSNTSQATKVPLRSDR 63
YE IL D FS+ NV+ LW+ Y+ IE+ R Q K P +
Sbjct: 623 YERCILLDIEFSDNQNVDQILWKNAFYQVIEKFR---------------QLVKDP-NVEN 666
Query: 64 VTKIRQQFKTFLSEATGFYHELILKIRAKYGLPLGNFSE 102
+IR + L E + F+ L+ K++ Y L ++ +
Sbjct: 667 PEQIRNRLLELLDEGSDFFDSLLQKLQVTYKFKLEDYMD 705
Score = 38 (18.4 bits), Expect = 4.0e-17, Sum P(3) = 4.0e-17
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 31 RRIEELRAHYSAAVSSAGSNTS 52
R I L AH + +V+SAGS S
Sbjct: 406 RGILILPAHTTLSVNSAGSPES 427
>MGI|MGI:2144117 [details] [associations]
symbol:Smg6 "Smg-6 homolog, nonsense mediated mRNA decay
factor (C. elegans)" species:10090 "Mus musculus" [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO] [GO:0000723 "telomere maintenance"
evidence=ISO] [GO:0000781 "chromosome, telomeric region"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004518
"nuclease activity" evidence=IEA] [GO:0004519 "endonuclease
activity" evidence=IEA] [GO:0004521 "endoribonuclease activity"
evidence=ISO] [GO:0005634 "nucleus" evidence=ISO] [GO:0005694
"chromosome" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0005829 "cytosol" evidence=ISO] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0042162 "telomeric DNA binding"
evidence=ISO] [GO:0046872 "metal ion binding" evidence=IEA]
InterPro:IPR011990 MGI:MGI:2144117 InterPro:IPR006596 GO:GO:0005829
GO:GO:0005634 GO:GO:0005730 GO:GO:0000184 GO:GO:0046872
Gene3D:1.25.40.10 GO:GO:0004521 GO:GO:0000781 GO:GO:0000723
GO:GO:0042162 SMART:SM00670 EMBL:AL603905 InterPro:IPR018834
InterPro:IPR019458 Pfam:PF10374 Pfam:PF10373 CTD:23293
eggNOG:NOG313444 HOGENOM:HOG000112402 HOVERGEN:HBG051511 KO:K11124
OMA:MRNMQQQ OrthoDB:EOG4KKZ29 ChiTaRS:SMG6 EMBL:AL604066
EMBL:AL662892 EMBL:BC066040 EMBL:AK129203 IPI:IPI00417158
RefSeq:NP_001002764.1 UniGene:Mm.288460 ProteinModelPortal:P61406
SMR:P61406 STRING:P61406 PhosphoSite:P61406 PaxDb:P61406
PRIDE:P61406 Ensembl:ENSMUST00000045281 GeneID:103677
KEGG:mmu:103677 UCSC:uc007kcz.1 GeneTree:ENSGT00560000077120
InParanoid:P61406 NextBio:356057 Bgee:P61406 Genevestigator:P61406
GermOnline:ENSMUSG00000038290 Uniprot:P61406
Length = 1418
Score = 195 (73.7 bits), Expect = 7.2e-17, Sum P(3) = 7.2e-17
Identities = 53/174 (30%), Positives = 87/174 (50%)
Query: 53 QATKVPLRSDRVTKIRQQFKTFLSEATGFYHELILKIRAKYGLPLGNFSEDSENRIIMDK 112
Q K P S+ +IR + L E + F+ L+ K++ Y L ++ + I K
Sbjct: 656 QLLKDP-NSENPEQIRNRLLELLDEGSDFFDSLLQKLQVTYKFKLEDYMD---GLAIRSK 711
Query: 113 DGKKSSEVKKGLVSCHRCLIYLGDLARYKGLYGEGDSKSREXXXXXXXXXXXXXXWPSSG 172
+K+ VK L+S R +I GD++RY+ E + + P +G
Sbjct: 712 PLRKT--VKYALISAQRSMICQGDISRYR----EQANDTANYGKARSWYLKAQHIAPKNG 765
Query: 173 NPHHQLAILASYSSDELVAVYRYFRSLAVDSPFSTARDNLIVAFEKNRQSYSQM 226
P++QLA+LA Y+ +L AVY Y RSLA +P TA+++L+ FE+ ++ QM
Sbjct: 766 RPYNQLALLAVYTRRKLDAVYYYMRSLAASNPILTAKESLMSLFEETKRKAEQM 819
Score = 112 (44.5 bits), Expect = 7.2e-17, Sum P(3) = 7.2e-17
Identities = 70/265 (26%), Positives = 111/265 (41%)
Query: 254 ASKDADMETSAVKESVSGVQEKLKAFCTRFVRLNGILFTRTSLETFAEVLALVSSGLCEL 313
+ KD++ E S S + K F F+ +G LFTR +ETF V V L
Sbjct: 869 SGKDSEQENGLGSLSPSDLN---KRFILSFLHAHGKLFTRIGMETFPAVAEKVLKEFQVL 925
Query: 314 LSSGPEEELNFGSDANENALFIVRLVSILIFTVHNLKKENENQTYAEIVQRAVLLQNAFT 373
L P GS +++L++I +F VHN + ++ ++E R+V+ + A +
Sbjct: 926 LQHSPSP---IGSTR------MLQLMTINMFAVHNSQLKD---CFSEEC-RSVIQEQAAS 972
Query: 374 AVFELMGHIIERCM---------QLSDPS----------SSY------LLPGVLVFVEWL 408
+ +++RC QLS P SS+ LLP V V+ +W+
Sbjct: 973 LGLAMFSLLVQRCTCLLKDSAKAQLSSPEDQEDQDDIKVSSFVPDLKELLPSVKVWSDWM 1032
Query: 409 ACYPDIASGSDAD-ERQATVRSNFWNQCISFLNKILSLGPMSVADDEDLTCFFNMSRYDE 467
YPD + + V + W+ F N IL+ +V E + Y +
Sbjct: 1033 LGYPDTWNPPPTSLDLPLQVAVDVWSTLADFCN-ILT----AVNQSE-------VPLYKD 1080
Query: 468 AETE-NRLALWEDIELRGFLPLLPA 491
+ + L L ED L GF+PLL A
Sbjct: 1081 PDDDLTLLILEEDRLLSGFVPLLAA 1105
Score = 80 (33.2 bits), Expect = 3.6e-05, Sum P(2) = 3.6e-05
Identities = 28/99 (28%), Positives = 44/99 (44%)
Query: 5 YEAIILEDHAFSEQHNVEYALWQ-LHYRRIEELRAHYSAAVSSAGSNTSQATKVPLRSDR 63
YE IL D FS+ NV+ LW+ Y+ IE+ R Q K P S+
Sbjct: 622 YERCILLDIEFSDSQNVDQILWKNAFYQVIEKFR---------------QLLKDP-NSEN 665
Query: 64 VTKIRQQFKTFLSEATGFYHELILKIRAKYGLPLGNFSE 102
+IR + L E + F+ L+ K++ Y L ++ +
Sbjct: 666 PEQIRNRLLELLDEGSDFFDSLLQKLQVTYKFKLEDYMD 704
Score = 45 (20.9 bits), Expect = 7.2e-17, Sum P(3) = 7.2e-17
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 30 YRRIEELRAHY-SAAVSSAGSNTS 52
Y R ++ R Y + + SSAGSN S
Sbjct: 243 YSRSDKRRNRYRTCSTSSAGSNNS 266
Score = 38 (18.4 bits), Expect = 3.7e-16, Sum P(3) = 3.7e-16
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 31 RRIEELRAHYSAAVSSAGSNTS 52
R I L AH + +VSS+GS S
Sbjct: 405 RGILILPAHTALSVSSSGSPES 426
>UNIPROTKB|E1C510 [details] [associations]
symbol:SMG6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000723 "telomere maintenance" evidence=IEA]
[GO:0004521 "endoribonuclease activity" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0042162 "telomeric DNA binding" evidence=IEA]
InterPro:IPR011990 InterPro:IPR006596 GO:GO:0005829 GO:GO:0005730
Gene3D:1.25.40.10 GO:GO:0004521 GO:GO:0000723 GO:GO:0042162
SMART:SM00670 InterPro:IPR018834 InterPro:IPR019458 Pfam:PF10374
Pfam:PF10373 OMA:MRNMQQQ GeneTree:ENSGT00560000077120
EMBL:AADN02025881 EMBL:AADN02025882 EMBL:AADN02025883
EMBL:AADN02025884 EMBL:AADN02025885 EMBL:AADN02025886
EMBL:AADN02025887 EMBL:AADN02025888 EMBL:AADN02025889
IPI:IPI00594156 Ensembl:ENSGALT00000004908 Uniprot:E1C510
Length = 1382
Score = 209 (78.6 bits), Expect = 9.2e-17, Sum P(3) = 9.2e-17
Identities = 61/206 (29%), Positives = 98/206 (47%)
Query: 53 QATKVPLRSDRVTKIRQQFKTFLSEATGFYHELILKIRAKYGLPLGNFSEDSENRIIMDK 112
Q K PL + +IR + L E T F+ L+ K++ Y + ++ + R K
Sbjct: 662 QLLKDPL-GENAQEIRNKLLQLLDEGTSFFDGLLQKLQVSYQFKVEDYMDGMAIRC---K 717
Query: 113 DGKKSSEVKKGLVSCHRCLIYLGDLARYKGLYGEGDSKSREXXXXXXXXXXXXXXWPSSG 172
+K VK L+S RC+I GD+ RY+ E + + P +G
Sbjct: 718 PLRKM--VKYALISAQRCMICQGDICRYR----EQANDTANYGKARSWYLKAQQIAPKNG 771
Query: 173 NPHHQLAILASYSSDELVAVYRYFRSLAVDSPFSTARDNLIVAFEKNRQSYSQMSGDVKS 232
P++QLA+LA Y+ +L AVY Y RSLA +P TA+++L+ FE+ ++ QM K
Sbjct: 772 RPYNQLALLAIYTRRKLDAVYYYMRSLAASNPILTAKESLMSLFEETKRKAEQME-QKKH 830
Query: 233 STAKEAGRLTGKGRGKVEVKLASKDA 258
+ + GKG+ K ++ DA
Sbjct: 831 QVLELSPSHRGKGK-KSTLRQVGDDA 855
Score = 91 (37.1 bits), Expect = 9.2e-17, Sum P(3) = 9.2e-17
Identities = 61/238 (25%), Positives = 97/238 (40%)
Query: 277 KAFCTRFVRLNGILFTRTSLETFAEVLALVSSGLCELLSSGPEEELNFGSDANENALFIV 336
K F F+ +G LFTR +ETF V V LL P GS ++
Sbjct: 895 KRFILSFLHAHGKLFTRIGMETFPAVAEEVLREFQVLLQHSPPP---IGSTR------ML 945
Query: 337 RLVSILIFTVHNLK-KENENQTYAEIVQ-RAVLLQ-NAFTAVFELMGHIIERCMQLSDPS 393
+LV+I +F V+N + KE ++ ++Q +A L + F + +++ C+Q+
Sbjct: 946 QLVAINMFAVYNSQPKECISEDCRSVIQEQATALGLSMFALLVRRCTNLLRECVQVQPQE 1005
Query: 394 SSY------------------LLPGVLVFVEWLACYPDIASGSDAD-ERQATVRSNFWNQ 434
LLP V V+ +W+ +PD + E V + W
Sbjct: 1006 EEQEDEEDDIKVSALPQDLKELLPSVKVWSDWMLGHPDTWNPPPTSLELPKQVSVDVWAT 1065
Query: 435 CISFLNKILSLGPMSVADDEDLTCFFNMSRYDEAETENRL-ALWEDIELRGFLPLLPA 491
F N IL+ +V E + Y + + + L +L ED L GF+PLL A
Sbjct: 1066 LADFCN-ILT----AVNQSE-------VPLYKDPDDDLALLSLEEDRLLSGFVPLLVA 1111
Score = 50 (22.7 bits), Expect = 9.2e-17, Sum P(3) = 9.2e-17
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 30 YRRIEELRAHY-SAAVSSAGSNTSQATKVPL 59
Y R ++ R+ Y + + SSAGSN S +PL
Sbjct: 260 YSRSDKRRSRYRTCSTSSAGSNNS-VDGIPL 289
>UNIPROTKB|Q5RAK6 [details] [associations]
symbol:SMG6 "Telomerase-binding protein EST1A" species:9601
"Pongo abelii" [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=ISS] [GO:0004521
"endoribonuclease activity" evidence=ISS] [GO:0005829 "cytosol"
evidence=ISS] InterPro:IPR011990 InterPro:IPR006596 GO:GO:0005829
GO:GO:0005730 GO:GO:0000184 GO:GO:0046872 GO:GO:0003677
Gene3D:1.25.40.10 GO:GO:0004521 GO:GO:0000781 SMART:SM00670
InterPro:IPR018834 InterPro:IPR019458 Pfam:PF10374 Pfam:PF10373
CTD:23293 HOVERGEN:HBG051511 KO:K11124 EMBL:CR859009
RefSeq:NP_001125708.1 UniGene:Pab.7559 ProteinModelPortal:Q5RAK6
SMR:Q5RAK6 PRIDE:Q5RAK6 GeneID:100172632 KEGG:pon:100172632
InParanoid:Q5RAK6 Uniprot:Q5RAK6
Length = 1419
Score = 200 (75.5 bits), Expect = 2.2e-16, Sum P(3) = 2.2e-16
Identities = 54/174 (31%), Positives = 86/174 (49%)
Query: 53 QATKVPLRSDRVTKIRQQFKTFLSEATGFYHELILKIRAKYGLPLGNFSEDSENRIIMDK 112
Q K P + +IR + L E + F+ L+ K++ Y L ++ + I K
Sbjct: 657 QLVKDP-NVENPEQIRNRLLELLDEGSDFFDSLLQKLQVTYKFKLEDYID---GLAIRSK 712
Query: 113 DGKKSSEVKKGLVSCHRCLIYLGDLARYKGLYGEGDSKSREXXXXXXXXXXXXXXWPSSG 172
+K+ VK L+S RC+I GD+ARY+ E + P +G
Sbjct: 713 PLRKT--VKYALISAQRCMICQGDIARYR----EQARDTANYGKARSWYLKAQHIAPKNG 766
Query: 173 NPHHQLAILASYSSDELVAVYRYFRSLAVDSPFSTARDNLIVAFEKNRQSYSQM 226
P++QLA+LA Y+ +L AVY Y RSLA +P TA+++L+ FE+ ++ QM
Sbjct: 767 RPYNQLALLAVYTRRKLDAVYYYMRSLAASNPILTAKESLMSLFEETKRKAEQM 820
Score = 109 (43.4 bits), Expect = 2.2e-16, Sum P(3) = 2.2e-16
Identities = 70/261 (26%), Positives = 112/261 (42%)
Query: 254 ASKDADMETSAVKESVSGVQEKLKAFCTRFVRLNGILFTRTSLETFAEVLALVSSGLCEL 313
+ KD++ E S S + K F F+ +G LFTR +ETF V V L
Sbjct: 870 SGKDSEQENGLGSLSPSDLN---KRFILSFLHAHGKLFTRIGMETFPAVAEKVLKEFQVL 926
Query: 314 LSSGPEEELNFGSDANENALFIVRLVSILIFTVHNLK-KENENQTYAEIVQ-RAVLLQNA 371
L P GS +++L++I +F VHN + K+ ++ ++Q +A L A
Sbjct: 927 LQHSPSP---IGSTR------MLQLMTINMFAVHNSQLKDCFSEECRSVIQEQAAALGLA 977
Query: 372 -FTAVFELMGHIIERCM--QLSDPS----------SSY------LLPGVLVFVEWLACYP 412
F+ + ++++ QLS P SS+ LLP V V+ +W+ YP
Sbjct: 978 MFSLLVCRCTYLLKESAKAQLSSPEDQDDQDDIKVSSFVPDLKELLPSVKVWSDWMLGYP 1037
Query: 413 DIASGSDAD-ERQATVRSNFWNQCISFLNKILSLGPMSVADDEDLTCFFNMSRYDEAETE 471
D + + + V + W+ F N IL+ +V E + Y + + +
Sbjct: 1038 DTWNPPPTSLDLPSHVAVDVWSTLADFCN-ILT----AVNQSE-------VPLYKDPDDD 1085
Query: 472 -NRLALWEDIELRGFLPLLPA 491
L L ED L GF+PLL A
Sbjct: 1086 LTLLILEEDRLLSGFVPLLAA 1106
Score = 74 (31.1 bits), Expect = 0.00030, Sum P(2) = 0.00030
Identities = 27/97 (27%), Positives = 42/97 (43%)
Query: 5 YEAIILEDHAFSEQHNVEYALWQ-LHYRRIEELRAHYSAAVSSAGSNTSQATKVPLRSDR 63
YE IL D FS+ NV+ LW+ Y+ IE+ R Q K P +
Sbjct: 623 YERCILLDIEFSDNQNVDQILWKNAFYQVIEKFR---------------QLVKDP-NVEN 666
Query: 64 VTKIRQQFKTFLSEATGFYHELILKIRAKYGLPLGNF 100
+IR + L E + F+ L+ K++ Y L ++
Sbjct: 667 PEQIRNRLLELLDEGSDFFDSLLQKLQVTYKFKLEDY 703
Score = 38 (18.4 bits), Expect = 2.2e-16, Sum P(3) = 2.2e-16
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 31 RRIEELRAHYSAAVSSAGSNTS 52
R I L AH + +V+SAGS S
Sbjct: 406 RGILILPAHTTLSVNSAGSPES 427
>ZFIN|ZDB-GENE-081107-52 [details] [associations]
symbol:smg6 "Smg-6 homolog, nonsense mediated mRNA
decay factor (C. elegans)" species:7955 "Danio rerio" [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IDA] [GO:0009790 "embryo development" evidence=IMP]
[GO:0016740 "transferase activity" evidence=IEA] InterPro:IPR011990
InterPro:IPR006596 ZFIN:ZDB-GENE-081107-52 GO:GO:0000184
GO:GO:0009790 Gene3D:1.25.40.10 SMART:SM00670 InterPro:IPR018834
InterPro:IPR019458 Pfam:PF10374 Pfam:PF10373
GeneTree:ENSGT00560000077120 EMBL:CR925771 EMBL:CU459076
IPI:IPI00994461 Ensembl:ENSDART00000135950 Bgee:F1R1I8
Uniprot:F1R1I8
Length = 1544
Score = 222 (83.2 bits), Expect = 1.8e-15, Sum P(2) = 1.8e-15
Identities = 89/355 (25%), Positives = 161/355 (45%)
Query: 61 SDRVTKIRQQFKTFLSEATGFYHELILKIRAKYGLPLGNFSEDSENRIIMDKDGKKSSEV 120
SD +I+ T L E F+ L+ K+++ + L ++ + R + +K+ V
Sbjct: 781 SDTAPQIKTMLMTILEEGAVFFDSLLQKLQSVFQFKLQDYMDCMAIRA---RPLRKT--V 835
Query: 121 KKGLVSCHRCLIYLGDLARYKGLYGEGDSKSREXXXXXXXXXXXXXXWPSSGNPHHQLAI 180
K L+S RC+I GD+ARY+ E S+S P +G P++QLA+
Sbjct: 836 KYALISAQRCMICQGDIARYR----EQASESANYGKARSWYLKAQQIAPKNGRPYNQLAL 891
Query: 181 LASYSSDELVAVYRYFRSLAVDSPFSTARDNLIVAFEKNRQSYSQMSGDVKSSTAKEA-- 238
LA Y+ +L AVY Y RSLA +P TA+++L+ FE+ ++ Q+ +K + A
Sbjct: 892 LAVYTKRKLDAVYYYMRSLAASNPILTAKESLMSLFEEAKRKADQVERRLKQDSDGSAHG 951
Query: 239 --GRLTGK-GRGKVEVKLASKDADME-TSAVKESVSGVQEK----LKAFCTRFVRLNGIL 290
G G+ G V++ + +++ TS S SG + L A + IL
Sbjct: 952 PKGHTGGRRGEDAARVEIWIRPSEVSGTSRPTGSESGKDSEQDGELGALSASDLNKRFIL 1011
Query: 291 -FTRTSLETFAEV-----LALVSSGLCELLSSGPEEELNFGSDANENALFIVRLVSILIF 344
F + F +V A+ + L E + GS ++++++I +F
Sbjct: 1012 SFLHAHGKLFTKVGMESFPAVANRVLLEFRALLQHSPSPLGSTR------MLQIITINMF 1065
Query: 345 TVHNLKKENENQTYAEIVQRAVLLQNAFTAVFELMGHIIERCMQLSDPSSSYLLP 399
T++N + + Q E R+ L + A + + G +++RC +L + + +P
Sbjct: 1066 TIYNAQIRAKGQ--GET--RSALEEQAISLGLAMFGLLVQRCTELLKETPTEPIP 1116
Score = 68 (29.0 bits), Expect = 1.8e-15, Sum P(2) = 1.8e-15
Identities = 50/217 (23%), Positives = 90/217 (41%)
Query: 397 LLPGVLVFVEWLACYPDIASGSDADERQATVRSNFWNQCISFLNKILSLGPMSVADDEDL 456
LLP + V+ +W+ +P+ + + + + W QC++ L S V E L
Sbjct: 1145 LLPSMKVWSDWMLGHPEKWNPPPCSMQGSP---DVW-QCLADLCNSFS----RVYHGEVL 1196
Query: 457 TCFFNMSRYDEAETENR-LALWEDIELRGFLPLLPAQTILDFSRKISFGGDGNKERKDRV 515
+ E + E R L L ED L GF+PLL A ++ + G D D
Sbjct: 1197 --LYKADADGEGDEELRVLQLEEDKMLSGFVPLLAAPQDACYTDQ---GTDA-AIAAD-C 1249
Query: 516 KRIFAAGKALANVIMVDQKPVCFDSKVKKFVIGTEPLDDITFTSSDVSKTNDLILENQAE 575
KR+ K + ++P+ K K++ PL T + + D ++ ++
Sbjct: 1250 KRVTVL-KYFLEALCGQEEPL-LAFKGGKYISMAAPLTPSINTENKAQEQEDDVIVEESS 1307
Query: 576 KAMNLGVVQAPQLYMDGEEED--EVIVFKPAVTEKRA 610
+ + G + ++ DG E+D E+ + A+ K A
Sbjct: 1308 LSASEGEIDG-EMEGDGSEDDIRELRARRHALAHKLA 1343
Score = 40 (19.1 bits), Expect = 1.4e-12, Sum P(2) = 1.4e-12
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 593 EEEDEVIVFKPAVTEKRADVVGSTWMYYDG 622
E+ED+VIV + +++ ++ G M DG
Sbjct: 1296 EQEDDVIVEESSLSASEGEIDGE--MEGDG 1323
>ZFIN|ZDB-GENE-030131-9122 [details] [associations]
symbol:smg7 "Smg-7 homolog, nonsense mediated mRNA
decay factor (C. elegans)" species:7955 "Danio rerio" [GO:0009790
"embryo development" evidence=IMP] [GO:0016740 "transferase
activity" evidence=IEA] InterPro:IPR011990
ZFIN:ZDB-GENE-030131-9122 GO:GO:0009790 Gene3D:1.25.40.10
InterPro:IPR018834 InterPro:IPR019458 Pfam:PF10374 Pfam:PF10373
GeneTree:ENSGT00560000077120 EMBL:BX681417 HOVERGEN:HBG056330
OMA:PASSDHS IPI:IPI00481135 UniGene:Dr.76396 SMR:Q1LVF3
Ensembl:ENSDART00000085976 Uniprot:Q1LVF3
Length = 1130
Score = 202 (76.2 bits), Expect = 8.6e-14, Sum P(3) = 8.6e-14
Identities = 64/213 (30%), Positives = 103/213 (48%)
Query: 20 NVEYALWQLHYRRIEE-LRAH-YSAAVSSAGSNTSQATKVPLRSDRVTKIRQQFKTFLSE 77
++EYAL +++E+ L H + +++ S P RS+ ++ FL
Sbjct: 46 DLEYAL----DKKVEQDLWNHAFKNQITTLQSQAKNRAN-PNRSE----VQANLSLFLEA 96
Query: 78 ATGFYHELILKIRAKYGLPLGNFSEDSENRIIMDKDGKKSSEVKKGLVSC----HRCLIY 133
A+GFY +L+ ++ + + L + S+ II +K S+ VK SC CL++
Sbjct: 97 ASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQSSTSAIVKPQPSSCSYICQHCLVH 156
Query: 134 LGDLARYKGLYGEGDSKSREXXXXXXXXXXXXXXWPSSGNPHHQLAILASYSSDELVAVY 193
LGD+ARY+ + +S R PS+G P++QLAILAS D L ++
Sbjct: 157 LGDIARYRNQTSQAESYYRHAAQLV----------PSNGQPYNQLAILASSKGDHLTTIF 206
Query: 194 RYFRSLAVDSPFSTARDNLIVAFEKNRQSYSQM 226
Y RS+AV PF A NL A K +S ++
Sbjct: 207 YYCRSIAVKFPFPAASTNLQKALSKALESRDEV 239
Score = 118 (46.6 bits), Expect = 5.5e-05, Sum P(3) = 5.5e-05
Identities = 38/156 (24%), Positives = 72/156 (46%)
Query: 1 MRENYEAIILEDHAFSEQHNVEYALWQLHYRRIEELRAHYSAAVSSAGSNTSQATKVPLR 60
+++ Y+ +++ D ++ VE LW ++ ++ S A + A N S+
Sbjct: 35 LQDLYQKMLVTDLEYALDKKVEQDLWNHAFKN--QITTLQSQAKNRANPNRSE------- 85
Query: 61 SDRVTKIRQQFKTFLSEATGFYHELILKIRAKYGLPLGNFSEDSENRIIMDKDGKKSSEV 120
++ FL A+GFY +L+ ++ + + L + S+ II +K S+ V
Sbjct: 86 ------VQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQSSTSAIV 139
Query: 121 KKGLVSC----HRCLIYLGDLARYKGLYGEGDSKSR 152
K SC CL++LGD+ARY+ + +S R
Sbjct: 140 KPQPSSCSYICQHCLVHLGDIARYRNQTSQAESYYR 175
Score = 69 (29.3 bits), Expect = 8.6e-14, Sum P(3) = 8.6e-14
Identities = 18/46 (39%), Positives = 25/46 (54%)
Query: 456 LTCFFNMSRYDEAETENR--LALWEDIELRGFLPLLPAQTILDFSR 499
L N + E + N + L E+ EL+GFL L PA +LDFS+
Sbjct: 392 LVSILNSFQPKEEDVSNASVIPLPEEFELQGFLALRPALRMLDFSK 437
Score = 65 (27.9 bits), Expect = 2.2e-13, Sum P(3) = 2.2e-13
Identities = 34/156 (21%), Positives = 64/156 (41%)
Query: 335 IVRLVSILIFTVHNLKK-ENENQTYAEIVQRAVLLQNAFTAVFELMGHIIERCMQLSDPS 393
+V + I +F +H+L+ NE ++ + +G ++ R + L+
Sbjct: 293 LVHITVINLFELHHLRDLSNEADEHSYSSDEQISWIQLLGLFMSFLGVMLSRAL-LNKNR 351
Query: 394 SSYL----LPGVLVFVEWLACYPDIASGSDADERQATVRSNFWNQCISFLNKILSLGPMS 449
+ LP + V ++WL P + + S D+RQ W +S LN S P
Sbjct: 352 EEIMGECPLPAIKVSLDWLRLRPTVFNESAMDKRQY-----IWPWLVSILN---SFQPK- 402
Query: 450 VADDEDLTCFFNMSRYDEAETENRLALWEDIELRGF 485
+ED++ + +E E + LAL + + F
Sbjct: 403 ---EEDVSNASVIPLPEEFELQGFLALRPALRMLDF 435
Score = 47 (21.6 bits), Expect = 8.6e-14, Sum P(3) = 8.6e-14
Identities = 14/53 (26%), Positives = 23/53 (43%)
Query: 638 AGSVSTSQDNLRQQSTYDSSLPLPVSVGNILPQHLQSVQPHAPKQLMEEEVSL 690
A V T + + S S P+ ++ G PQ Q P +Q +++ V L
Sbjct: 700 ANPVQTGKPSHIPYSQQRPSGPVALNQGPPQPQQTQPPPPQTSQQALQQSVQL 752
Score = 40 (19.1 bits), Expect = 4.4e-13, Sum P(3) = 4.4e-13
Identities = 10/28 (35%), Positives = 12/28 (42%)
Query: 769 AFPAGPRKSPVSRPVRHLGPPPGFSPVP 796
AFP P + P + PP FS P
Sbjct: 649 AFPPLPSRPGFPPPAYVIPPPVAFSMSP 676
>UNIPROTKB|G4N857 [details] [associations]
symbol:MGG_06307 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0043581 "mycelium development"
evidence=IEP] GO:GO:0043581 EMBL:CM001234 InterPro:IPR018834
InterPro:IPR019458 Pfam:PF10374 Pfam:PF10373 RefSeq:XP_003717277.1
ProteinModelPortal:G4N857 EnsemblFungi:MGG_06307T0 GeneID:2684462
KEGG:mgr:MGG_06307 Uniprot:G4N857
Length = 884
Score = 196 (74.1 bits), Expect = 1.5e-11, Sum P(3) = 1.5e-11
Identities = 62/214 (28%), Positives = 102/214 (47%)
Query: 9 ILEDHAFSEQHNVEYALWQLHYRRIEELRAHYSAAVSSAGSNTSQATKVPLRSDRVTKIR 68
+ ED A++ + NV+ LW +H E R S N KV + +V K++
Sbjct: 69 VFEDFAYATEQNVDKHLWNMHSTINGEFRRVRSRL------NPKAEPKVAILHRQVLKMQ 122
Query: 69 QQFKTFLSEATGFYHELILKIRAKYGLP-LGNFSEDSENRIIMDK-DGKKSSEVKKGLV- 125
F L + FY + ++ AKY +P L + + +DK D + ++ ++ +V
Sbjct: 123 GDF---LRTSQKFYKGYLQRLSAKYQIPNLDRVVKSVRFDVTLDKMDRESNAGLESQIVR 179
Query: 126 SCHRCLIYLGDLARYKGLYGEGDSKSREXXXXXXXXXXXXXXWPSSGNPHHQLAILASYS 185
+CH+ L++LGDL+RY+ L E D K ++ PSSG +HQ+A++
Sbjct: 180 ACHQILVHLGDLSRYR-L--EVDRKPQKTDIPLLYLRLANDLLPSSGLGYHQMAVVYRGV 236
Query: 186 SDE-LVAVYRYFRSLAVDSPFSTARDNLIVAFEK 218
D+ L VY R+L V P A NL + F+K
Sbjct: 237 KDQDLSIVYHLHRALVVQEPHPMAAKNLEIEFQK 270
Score = 52 (23.4 bits), Expect = 1.5e-11, Sum P(3) = 1.5e-11
Identities = 14/54 (25%), Positives = 27/54 (50%)
Query: 436 ISFLNKILSLGPMSVADDEDLTCFFNMSRYDEAETEN-RLALWEDIELRGFLPL 488
+ + N + + M + E ++ ++ R D+ + + L+EDIE GF PL
Sbjct: 440 VRYANHLSHVTEMHQSMAETISLLIDIFRGDQNDGSTAKYMLFEDIETLGFQPL 493
Score = 44 (20.5 bits), Expect = 1.5e-11, Sum P(3) = 1.5e-11
Identities = 17/59 (28%), Positives = 21/59 (35%)
Query: 723 TIPIQQSVNVNASGMHYSFSNGPEAVIPSKVDAIASLGVAAVKA----SSAFPAGPRKS 777
T+P N SG YS + PE + A A K S P+ PR S
Sbjct: 715 TLPWDMWTPTNRSGFGYSTTASPEVESTTAFGQAAHYSHAPRKTERLQSPMLPSAPRAS 773
Score = 39 (18.8 bits), Expect = 4.9e-11, Sum P(3) = 4.9e-11
Identities = 19/78 (24%), Positives = 30/78 (38%)
Query: 714 IG-PSLPAARTIPIQQSVNVNASGMHYSFSNGPEAVIPSKV---DAIASLGVAAVKASSA 769
IG P++ ++ + V+ G F PE P + D S G+ + A+
Sbjct: 633 IGTPNVAITKSNETEFDVDEEMLGRLNDFLAPPEVHSPQQKGIEDLTFSYGMHSTTANDV 692
Query: 770 FPAGPRKSPVSRPVRHLG 787
F A + PV P G
Sbjct: 693 FGALNSQRPVKTPTSASG 710
>ZFIN|ZDB-GENE-050913-144 [details] [associations]
symbol:smg5 "Smg-5 homolog, nonsense mediated mRNA
decay factor (C. elegans)" species:7955 "Danio rerio" [GO:0009790
"embryo development" evidence=IMP] InterPro:IPR006596
ZFIN:ZDB-GENE-050913-144 GO:GO:0009790 SMART:SM00670
InterPro:IPR018834 InterPro:IPR019458 Pfam:PF10374 Pfam:PF10373
CTD:23381 eggNOG:NOG303517 HOVERGEN:HBG082268 KO:K11125
OrthoDB:EOG4933H4 HOGENOM:HOG000261635 EMBL:BC096955 EMBL:FM993108
IPI:IPI00486086 RefSeq:NP_001020094.1 UniGene:Dr.36786
STRING:Q4V9C7 GeneID:553261 KEGG:dre:553261 InParanoid:Q4V9C7
NextBio:20880037 Uniprot:Q4V9C7
Length = 1099
Score = 169 (64.5 bits), Expect = 1.2e-10, Sum P(3) = 1.2e-10
Identities = 50/161 (31%), Positives = 76/161 (47%)
Query: 71 FKTFLSEATGFYHELILKIRAKYGLPLGN---FSEDSENRIIMDKD-GKKSSEVKKGLVS 126
++T L GF+ L+L I++ Y L L + ++ ++ I K S E++ ++
Sbjct: 108 YRTHLIAGVGFFQHLLLYIQSHYQLELQDCIDWTHVTDPLIGRKKPVSATSKEMEWAQMA 167
Query: 127 CHRCLIYLGDLARYKG-LYGEGDSKSREXXXXXXXXXXXXXXWPSSGNPHHQLAILASYS 185
CHRCL+YLGDLARY+ L G + E P G P +QL LA
Sbjct: 168 CHRCLVYLGDLARYQNELAGVEAEQLAERFYHQALSVA-----PHVGMPFNQLGTLAGSK 222
Query: 186 SDELVAVYRYFRSLAVDSPFSTARDNLIVAFEKNRQSYSQM 226
+ A Y Y R + ++PF A NL F+K + Y Q+
Sbjct: 223 FYNVEATYYYLRCIQSETPFDGAYGNLKRLFDKASKMYHQV 263
Score = 69 (29.3 bits), Expect = 1.2e-10, Sum P(3) = 1.2e-10
Identities = 24/78 (30%), Positives = 36/78 (46%)
Query: 742 SNGP----EAVIPSKVDAIASLGVAAVKASSAFPAGPRKSPVS-RPVRHLGPPPGFSPVP 796
+NGP +A I S + A++S +A F P S V RP P P +P P
Sbjct: 621 TNGPSVSNDASISSNLQAMSS---QLFQAKRCFRLAPTFSNVLLRPATTTPPAPELNPAP 677
Query: 797 SKQVTAPISGSELTNENP 814
+++T P +G N +P
Sbjct: 678 VQEITPP-TGETPRNTSP 694
Score = 60 (26.2 bits), Expect = 9.7e-10, Sum P(3) = 9.7e-10
Identities = 31/106 (29%), Positives = 45/106 (42%)
Query: 397 LLPGVLVFVEWLACYPDIASGSDADERQATVRSNFWNQCISFLNKILSLGPMSVADD--- 453
L+ V VF++WL DI A Q+ WN+ +S L +L G + D
Sbjct: 737 LIQVVKVFLDWLRTNTDIILMC-AQSSQS-----LWNR-LSVLLNLLPEGSKILETDIGL 789
Query: 454 -EDLTCFFNMSRYDEAETENRLALWEDIELRGFLPLLPAQTILDFS 498
+D+T +S + L L ED+ LR L A LDF+
Sbjct: 790 NKDVTEL--LSECEHPSLAQTLLLPEDVALRHLPALSVAHRCLDFT 833
Score = 50 (22.7 bits), Expect = 1.2e-10, Sum P(3) = 1.2e-10
Identities = 15/47 (31%), Positives = 24/47 (51%)
Query: 315 SSGPEEELNFGSDANENALFIVRLVSILIFTVHNLKKENENQTYAEI 361
S EE + GS ++ +F ++V I + VH+LK+ Q A I
Sbjct: 335 SEEEEEHDSVGSVLPDSLIF--KMVVICLMVVHSLKRGASKQYSASI 379
Score = 42 (19.8 bits), Expect = 7.7e-10, Sum P(3) = 7.7e-10
Identities = 17/59 (28%), Positives = 25/59 (42%)
Query: 208 ARDNLIVAFEKNR--QSYSQMSGDVKSSTAKEAGRLTGKGRGKVEVKLASKDADMETSA 264
ARD+ A + R Q+ S D + KE G KG G+ K+ + + SA
Sbjct: 421 ARDHSSAALSEERTLQNGSLEEDDDEEEEEKENGEDEPKGNGRTVA--TKKNQEKKRSA 477
>RGD|1584731 [details] [associations]
symbol:Smg5 "Smg-5 homolog, nonsense mediated mRNA decay factor
(C. elegans)" species:10116 "Rattus norvegicus" [GO:0005634
"nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0035303 "regulation of dephosphorylation" evidence=ISO]
[GO:0051721 "protein phosphatase 2A binding" evidence=ISO]
InterPro:IPR006596 RGD:1584731 GO:GO:0005634 GO:GO:0005737
SMART:SM00670 InterPro:IPR018834 InterPro:IPR019458 Pfam:PF10374
Pfam:PF10373 GO:GO:0035303 GeneTree:ENSGT00560000077120 OMA:RVCCIRS
IPI:IPI00368420 Ensembl:ENSRNOT00000026514 UCSC:RGD:1584731
NextBio:719977 Uniprot:E9PU03
Length = 1017
Score = 160 (61.4 bits), Expect = 1.0e-09, Sum P(3) = 1.0e-09
Identities = 59/214 (27%), Positives = 94/214 (43%)
Query: 71 FKTFLSEATGFYHELILKIRAKYGLPLG---NFSEDSENRIIMDKDGKKSS-EVKKGLVS 126
++T L GFY L+L I++ Y L L +++ ++ I K S E+ ++
Sbjct: 111 YRTHLVAGIGFYQHLLLYIQSHYQLELQCCIDWTHVTDPLIGCKKPVSASGKEMDWAQMA 170
Query: 127 CHRCLIYLGDLARYKGLYGEGDSKSREXXXXXXXXXXXXXXWPSSGNPHHQLAILASYSS 186
CHRCL+YLGDL+RY+ D++ P G P +QL LA
Sbjct: 171 CHRCLVYLGDLSRYQNELAGVDTELLAERFYYQALSVA----PQIGMPFNQLGTLAGSKY 226
Query: 187 DELVAVYRYFRSLAVDSPFSTARDNLIVAFEKNRQSYSQMSGDVKSSTAKEAGRLTGKGR 246
+ A+Y Y R + + F A NL ++K + Y Q+ KS T K + K R
Sbjct: 227 YSVEAMYCYLRCIQSEVSFEGAYGNLKRLYDKAAKMYHQLK---KSETRKLS---PSKKR 280
Query: 247 GKVEVKLASKDADMETSAVKESVSGVQEKLKAFC 280
K ++K + S ++ S V +L + C
Sbjct: 281 CK-DIKRLLVNFMYLQSLLQPKSSSVDSELTSLC 313
Score = 69 (29.3 bits), Expect = 1.0e-09, Sum P(3) = 1.0e-09
Identities = 35/120 (29%), Positives = 49/120 (40%)
Query: 384 ERCMQ--LSDPSSSYLLPGVLVFVEWLACYPDIASGSDADERQATVRSNFWNQCISFLNK 441
ER +Q L + LLP V VF++WL PD+ A Q+ WN+ LN
Sbjct: 640 ERSLQEKLQALMAEGLLPAVKVFLDWLRTNPDLIIVC-AQSSQS-----LWNRLSVLLNL 693
Query: 442 ILSLGPMSVADDEDLT-CFFNMSRYDEAETEN---RLALWEDIELRGFLPLLPAQTILDF 497
+ + G + D L C + E + L L ED+ LR PL A +F
Sbjct: 694 LPASGELQ---DSGLALCSEVQGLLEGCELPDLPASLLLPEDMALRNLPPLRAAHRRFNF 750
Score = 49 (22.3 bits), Expect = 1.0e-09, Sum P(3) = 1.0e-09
Identities = 23/80 (28%), Positives = 32/80 (40%)
Query: 296 LETFAEVLALVSSGLCELLSSGPEEELNFGSDANENALFIVRLVSILIFTVHNLKKENEN 355
LE F L + S L++ EEE G A L I ++ I + VH+LK+
Sbjct: 317 LEDFNLCLFYLPSSPSLGLTNEDEEECESGY-AFLPDLLIFQMAIICLMGVHSLKRAGSK 375
Query: 356 QTYAEIVQRAVLLQNAFTAV 375
Q A I L + V
Sbjct: 376 QYSAAIAFTLALFSHLINHV 395
Score = 37 (18.1 bits), Expect = 1.6e-06, Sum P(3) = 1.6e-06
Identities = 9/33 (27%), Positives = 19/33 (57%)
Query: 559 SSDVSKTNDLILENQAEKAMNLGVVQAPQLYMD 591
SS S N+ L+ + + M G++ A ++++D
Sbjct: 632 SSSRSCRNERSLQEKLQALMAEGLLPAVKVFLD 664
>UNIPROTKB|Q9UPR3 [details] [associations]
symbol:SMG5 "Protein SMG5" species:9606 "Homo sapiens"
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=TAS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0051721 "protein phosphatase 2A binding"
evidence=IDA] [GO:0006406 "mRNA export from nucleus" evidence=TAS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0035303 "regulation of dephosphorylation"
evidence=IMP] [GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0016070 "RNA metabolic process"
evidence=TAS] [GO:0016071 "mRNA metabolic process" evidence=TAS]
Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR006596
GO:GO:0005829 GO:GO:0005634 GO:GO:0010467
Pathway_Interaction_DB:telomerasepathway GO:GO:0000184
GO:GO:0006406 EMBL:CH471121 GO:GO:0051721
Pathway_Interaction_DB:hdac_classi_pathway SMART:SM00670
InterPro:IPR018834 InterPro:IPR019458 Pfam:PF10374 Pfam:PF10373
GO:GO:0035303 EMBL:AL135927 EMBL:AL589685 EMBL:AB085691
EMBL:AY168922 EMBL:AY336728 EMBL:AB029012 EMBL:BC007453
EMBL:BC038296 EMBL:AL137738 IPI:IPI00167861 RefSeq:NP_056142.2
UniGene:Hs.516837 PDB:2HWY PDBsum:2HWY ProteinModelPortal:Q9UPR3
SMR:Q9UPR3 IntAct:Q9UPR3 STRING:Q9UPR3 PhosphoSite:Q9UPR3
DMDM:84029494 PaxDb:Q9UPR3 PRIDE:Q9UPR3 Ensembl:ENST00000361813
GeneID:23381 KEGG:hsa:23381 UCSC:uc001foc.4 CTD:23381
GeneCards:GC01M156219 HGNC:HGNC:24644 MIM:610962 neXtProt:NX_Q9UPR3
PharmGKB:PA143485617 eggNOG:NOG303517 HOVERGEN:HBG082268
InParanoid:Q9UPR3 KO:K11125 OMA:RVCCIRS OrthoDB:EOG4933H4
ChiTaRS:SMG5 EvolutionaryTrace:Q9UPR3 GenomeRNAi:23381
NextBio:45485 ArrayExpress:Q9UPR3 Bgee:Q9UPR3 CleanEx:HS_SMG5
Genevestigator:Q9UPR3 GermOnline:ENSG00000198952 Uniprot:Q9UPR3
Length = 1016
Score = 161 (61.7 bits), Expect = 1.3e-09, Sum P(3) = 1.3e-09
Identities = 59/214 (27%), Positives = 94/214 (43%)
Query: 71 FKTFLSEATGFYHELILKIRAKYGLPLG---NFSEDSENRIIMDKDGKKSS-EVKKGLVS 126
++T L GFY L+L I++ Y L L +++ ++ I K S E+ ++
Sbjct: 111 YRTHLVAGIGFYQHLLLYIQSHYQLELQCCIDWTHVTDPLIGCKKPVSASGKEMDWAQMA 170
Query: 127 CHRCLIYLGDLARYKGLYGEGDSKSREXXXXXXXXXXXXXXWPSSGNPHHQLAILASYSS 186
CHRCL+YLGDL+RY+ D++ P G P +QL LA
Sbjct: 171 CHRCLVYLGDLSRYQNELAGVDTELLAERFYYQALSVA----PQIGMPFNQLGTLAGSKY 226
Query: 187 DELVAVYRYFRSLAVDSPFSTARDNLIVAFEKNRQSYSQMSGDVKSSTAKEAGRLTGKGR 246
+ A+Y Y R + + F A NL ++K + Y Q+ K T K + GK R
Sbjct: 227 YNVEAMYCYLRCIQSEVSFEGAYGNLKRLYDKAAKMYHQLK---KCETRKLS---PGKKR 280
Query: 247 GKVEVKLASKDADMETSAVKESVSGVQEKLKAFC 280
K ++K + S ++ S V +L + C
Sbjct: 281 CK-DIKRLLVNFMYLQSLLQPKSSSVDSELTSLC 313
Score = 64 (27.6 bits), Expect = 1.3e-09, Sum P(3) = 1.3e-09
Identities = 29/107 (27%), Positives = 46/107 (42%)
Query: 397 LLPGVLVFVEWLACYPDIASGSDADERQATVRSNFWNQCISFLNKILSLGPMSVA----- 451
LLP V VF++WL PD+ A Q+ WN+ LN + + G + +
Sbjct: 654 LLPAVKVFLDWLRTNPDLIIVC-AQSSQS-----LWNRLSVLLNLLPAAGELQESGLALC 707
Query: 452 -DDEDLTCFFNMSRYDEAETENRLALWEDIELRGFLPLLPAQTILDF 497
+ +DL + + + + L L ED+ LR PL A +F
Sbjct: 708 PEVQDL-----LEGCELPDLPSSLLLPEDMALRNLPPLRAAHRRFNF 749
Score = 52 (23.4 bits), Expect = 1.3e-09, Sum P(3) = 1.3e-09
Identities = 22/66 (33%), Positives = 30/66 (45%)
Query: 296 LETFAEVLALVSSGLCELLSSGPEEELNFGSDANENALFIVRLVSILIFTVHNLKKENEN 355
LE F L + S L+S EEE G A L I ++V I + VH+L++
Sbjct: 317 LEDFNLCLFYLPSSPNLSLASEDEEEYESGY-AFLPDLLIFQMVIICLMCVHSLERAGSK 375
Query: 356 QTYAEI 361
Q A I
Sbjct: 376 QYSAAI 381
>UNIPROTKB|F1RP14 [details] [associations]
symbol:SMG5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0051721 "protein phosphatase 2A binding" evidence=IEA]
[GO:0035303 "regulation of dephosphorylation" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] GO:GO:0005634 GO:GO:0005737 InterPro:IPR018834
InterPro:IPR019458 Pfam:PF10374 Pfam:PF10373 GO:GO:0035303
GeneTree:ENSGT00560000077120 EMBL:CU468654
Ensembl:ENSSSCT00000007109 OMA:CAQXLAL Uniprot:F1RP14
Length = 704
Score = 155 (59.6 bits), Expect = 2.1e-09, Sum P(3) = 2.1e-09
Identities = 58/214 (27%), Positives = 93/214 (43%)
Query: 71 FKTFLSEATGFYHELILKIRAKYGLPLG---NFSEDSENRIIMDKDGKKSS-EVKKGLVS 126
++T L GFY L+L I++ Y L L +++ ++ I K S E+ ++
Sbjct: 111 YRTHLVAGIGFYQHLLLYIQSHYQLELQCCIDWTHVTDPLIGCKKPVSASGKEMDWAQMA 170
Query: 127 CHRCLIYLGDLARYKGLYGEGDSKSREXXXXXXXXXXXXXXWPSSGNPHHQLAILASYSS 186
CHRCL+YLGDL+RY+ D++ P G P +QL LA
Sbjct: 171 CHRCLVYLGDLSRYQNELAGVDTELLAERFYYQALSVA----PQIGMPFNQLGTLAGSKY 226
Query: 187 DELVAVYRYFRSLAVDSPFSTARDNLIVAFEKNRQSYSQMSGDVKSSTAKEAGRLTGKGR 246
+ A+Y Y R + + F A NL ++K + Y Q+ K T K + K R
Sbjct: 227 YNVEAMYCYLRCIQSEVSFEGAYGNLKRLYDKAAKMYHQLK---KCETRKLS---PSKKR 280
Query: 247 GKVEVKLASKDADMETSAVKESVSGVQEKLKAFC 280
K ++K + S ++ S V +L + C
Sbjct: 281 CK-DIKRLLVNFMYLQSLLQPKSSSVDSELTSLC 313
Score = 59 (25.8 bits), Expect = 2.1e-09, Sum P(3) = 2.1e-09
Identities = 17/52 (32%), Positives = 25/52 (48%)
Query: 397 LLPGVLVFVEWLACYPDIASGSDADERQATVRSNFWNQCISFLNKILSLGPM 448
LLP V VF++WL PD+ A Q+ WN+ LN + + G +
Sbjct: 654 LLPAVKVFLDWLRTNPDLIIVC-AQSSQS-----LWNRLSVLLNLLPAAGEL 699
Score = 55 (24.4 bits), Expect = 2.1e-09, Sum P(3) = 2.1e-09
Identities = 23/66 (34%), Positives = 30/66 (45%)
Query: 296 LETFAEVLALVSSGLCELLSSGPEEELNFGSDANENALFIVRLVSILIFTVHNLKKENEN 355
LE F L + S L+S EEE G A L I ++V I + VH+LK+
Sbjct: 317 LEDFNLCLFYLPSSPNLSLASEDEEEYESGY-AFLPDLLIFQMVIICLMGVHSLKRAGSK 375
Query: 356 QTYAEI 361
Q A I
Sbjct: 376 QYSAAI 381
>UNIPROTKB|A4IFN9 [details] [associations]
symbol:SMG5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0051721 "protein phosphatase 2A binding" evidence=IEA]
[GO:0035303 "regulation of dephosphorylation" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR006596 GO:GO:0005634 GO:GO:0005737
SMART:SM00670 InterPro:IPR018834 InterPro:IPR019458 Pfam:PF10374
Pfam:PF10373 GO:GO:0035303 GeneTree:ENSGT00560000077120 CTD:23381
eggNOG:NOG303517 HOVERGEN:HBG082268 KO:K11125 OMA:RVCCIRS
OrthoDB:EOG4933H4 HOGENOM:HOG000261635 EMBL:DAAA02007141
EMBL:BC134680 IPI:IPI00696371 RefSeq:NP_001077148.1
UniGene:Bt.61156 SMR:A4IFN9 STRING:A4IFN9
Ensembl:ENSBTAT00000012415 GeneID:513598 KEGG:bta:513598
InParanoid:A4IFN9 NextBio:20870937 Uniprot:A4IFN9
Length = 1016
Score = 155 (59.6 bits), Expect = 2.7e-09, Sum P(3) = 2.7e-09
Identities = 58/214 (27%), Positives = 93/214 (43%)
Query: 71 FKTFLSEATGFYHELILKIRAKYGLPLG---NFSEDSENRIIMDKDGKKSS-EVKKGLVS 126
++T L GFY L+L I++ Y L L +++ ++ I K S E+ ++
Sbjct: 111 YRTHLVAGIGFYQHLLLYIQSHYQLELQCCIDWTHVTDPLIGCKKPVSASGKEMDWAQMA 170
Query: 127 CHRCLIYLGDLARYKGLYGEGDSKSREXXXXXXXXXXXXXXWPSSGNPHHQLAILASYSS 186
CHRCL+YLGDL+RY+ D++ P G P +QL LA
Sbjct: 171 CHRCLVYLGDLSRYQNELAGVDTELLAERFYYQALSVA----PQIGMPFNQLGTLAGSKY 226
Query: 187 DELVAVYRYFRSLAVDSPFSTARDNLIVAFEKNRQSYSQMSGDVKSSTAKEAGRLTGKGR 246
+ A+Y Y R + + F A NL ++K + Y Q+ K T K + K R
Sbjct: 227 YNVEAMYCYLRCIQSEVSFEGAYGNLKRLYDKAAKMYHQLK---KCETRKLS---PSKKR 280
Query: 247 GKVEVKLASKDADMETSAVKESVSGVQEKLKAFC 280
K ++K + S ++ S V +L + C
Sbjct: 281 CK-DIKRLLVNFMYLQSLLQPKSSSVDSELTSLC 313
Score = 64 (27.6 bits), Expect = 2.7e-09, Sum P(3) = 2.7e-09
Identities = 29/105 (27%), Positives = 41/105 (39%)
Query: 397 LLPGVLVFVEWLACYPDIASGSDADERQATVRSNFWNQCISFLNKILSLGPMSVADDEDL 456
LLP V VF++WL PD+ A Q+ WN+ LN + + G + + L
Sbjct: 654 LLPAVKVFLDWLRTNPDLIVVC-AQSSQS-----LWNRLSVLLNLLPAAGELQ---ESGL 704
Query: 457 TCFFNMSRYDEA----ETENRLALWEDIELRGFLPLLPAQTILDF 497
+ E + + L L ED LR PL A F
Sbjct: 705 ALCAEVQELLEGCELPDLPSSLLLPEDTALRNLPPLRAAHRRFSF 749
Score = 55 (24.4 bits), Expect = 2.7e-09, Sum P(3) = 2.7e-09
Identities = 23/66 (34%), Positives = 30/66 (45%)
Query: 296 LETFAEVLALVSSGLCELLSSGPEEELNFGSDANENALFIVRLVSILIFTVHNLKKENEN 355
LE F L + S L+S EEE G A L I ++V I + VH+LK+
Sbjct: 317 LEDFNLCLFYLPSSPNLSLASEDEEEYESGY-AFLPDLLIFQMVIICLMGVHSLKRAGSK 375
Query: 356 QTYAEI 361
Q A I
Sbjct: 376 QYSAAI 381
>ASPGD|ASPL0000044452 [details] [associations]
symbol:AN2271 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] EMBL:BN001307 InterPro:IPR018834 InterPro:IPR019458
Pfam:PF10374 Pfam:PF10373 EnsemblFungi:CADANIAT00008963 OMA:RYRETEL
Uniprot:C8VMW9
Length = 857
Score = 182 (69.1 bits), Expect = 5.3e-09, Sum P(3) = 5.3e-09
Identities = 57/223 (25%), Positives = 100/223 (44%)
Query: 1 MRENYEAIILEDHAFSEQHNVEYALWQLHYRRIEELRAHYSAAVSSAGSNTSQATKVPLR 60
+R + IL+D + +VE LW H + + + +S + + K P+
Sbjct: 40 LRTACQNAILQDFETARSIDVEGRLWDAHLK----INTRFRKLLSRFRDDNEKKKK-PV- 93
Query: 61 SDRVTKIRQQFKTFLSEATGFYHELILKIRAKYGLPLGNFSEDSENRIIMDKDG----KK 116
+R K + + F+ + FY I ++ + +G + + + D +
Sbjct: 94 -ER-RKFEKHYLEFIKSSQRFYRGYIQQLASHFG-GISELEKVARKFNFDDLSAAPPIQT 150
Query: 117 SSEVKKGLV-SCHRCLIYLGDLARYKGLYGEGDSKSREXXXXXXXXXXXXXXWPSSGNPH 175
S ++K ++ SCH L+ LGDL+RY+ E SK R +P+SG H
Sbjct: 151 SESLRKSILRSCHATLVRLGDLSRYRET--ELVSKERNWGPAIGYYDLASVIYPASGASH 208
Query: 176 HQLAILASYSSDELVAVYRYFRSLAVDSPFSTARDNLIVAFEK 218
+QLA++A ++ L A Y +R+L+ P TAR NL + F K
Sbjct: 209 NQLAVIALADANHLKATYHLYRALSAQEPHPTARGNLEIEFRK 251
Score = 46 (21.3 bits), Expect = 5.3e-09, Sum P(3) = 5.3e-09
Identities = 37/146 (25%), Positives = 54/146 (36%)
Query: 735 SGMHYSFSNGPEAVIPSKVDAIASLGVAAVKASSAFPAGPRKSPVSRPVRHLGPPPGFSP 794
+G H+S S ++ + + + A S F G + + VS G G
Sbjct: 553 TGHHHSLSTA--SIEREDIRQVKQEANYQIDARSTF-GGSQSASVSMSAAMNGIVEGVER 609
Query: 795 VPSKQV--TAPI----SGSELTNENPLMDDYSWLDGYQLPASTKGPGLGSSVNYLSHANP 848
+ AP+ S ++N P DD L Q P + PGLG + S A P
Sbjct: 610 LVESDTYENAPVIPNRSFDAISNTVP-RDDK--LPARQTPVAP--PGLGPPMTSYSAALP 664
Query: 849 QYVSNSNGLAGTGFPFPGKQFPAVQS 874
Q VS+S PG P + S
Sbjct: 665 Q-VSSSQSFTPQA-AIPG--LPTIWS 686
Score = 41 (19.5 bits), Expect = 5.4e-09, Sum P(4) = 5.4e-09
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 577 AMNLGVVQAPQLYMDGEEEDEVIVFKP---AVTEKR-ADVVG 614
A VV P++ EE++E + F P T +R DV G
Sbjct: 443 ASTFDVVHLPEVDYLLEEDEETLCFMPLSKGATSRRYLDVNG 484
Score = 39 (18.8 bits), Expect = 5.3e-09, Sum P(3) = 5.3e-09
Identities = 16/77 (20%), Positives = 32/77 (41%)
Query: 397 LLPGVLVFVEWLACYPD-IASGSDADERQATVRSNFWNQCISFLNKILS------LGPMS 449
+LP + + WL + + + + D A + FW + L + S L +
Sbjct: 396 ILPALRNYSSWLLTVSNYLVAYKEKDTPLAVQLTEFWKIYANTLTLLASTFDVVHLPEVD 455
Query: 450 --VADDEDLTCFFNMSR 464
+ +DE+ CF +S+
Sbjct: 456 YLLEEDEETLCFMPLSK 472
Score = 39 (18.8 bits), Expect = 5.4e-09, Sum P(4) = 5.4e-09
Identities = 13/41 (31%), Positives = 20/41 (48%)
Query: 527 NVIMVDQKPVCFDSKVKKFVIGTEPLDDITFTSSDVS-KTN 566
N + VD K + ++KF + +D + T SD KTN
Sbjct: 303 NQLAVDLKERSLEGILQKFCLINIAAEDSSRTRSDERPKTN 343
>MGI|MGI:2447364 [details] [associations]
symbol:Smg5 "Smg-5 homolog, nonsense mediated mRNA decay
factor (C. elegans)" species:10090 "Mus musculus" [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0035303 "regulation of
dephosphorylation" evidence=ISO] [GO:0051721 "protein phosphatase
2A binding" evidence=ISO] MGI:MGI:2447364 InterPro:IPR006596
GO:GO:0005634 GO:GO:0005737 GO:GO:0000184 GO:GO:0051721
SMART:SM00670 InterPro:IPR018834 InterPro:IPR019458 Pfam:PF10374
Pfam:PF10373 GO:GO:0035303 GeneTree:ENSGT00560000077120 CTD:23381
eggNOG:NOG303517 HOVERGEN:HBG082268 KO:K11125 OMA:RVCCIRS
OrthoDB:EOG4933H4 EMBL:AK129286 EMBL:BC024683 EMBL:BC100408
IPI:IPI00674658 IPI:IPI00677945 RefSeq:NP_839977.2
UniGene:Mm.439830 ProteinModelPortal:Q6ZPY2 SMR:Q6ZPY2
STRING:Q6ZPY2 PhosphoSite:Q6ZPY2 PaxDb:Q6ZPY2 PRIDE:Q6ZPY2
Ensembl:ENSMUST00000001451 GeneID:229512 KEGG:mmu:229512
UCSC:uc008pus.1 UCSC:uc008put.1 HOGENOM:HOG000261635
InParanoid:Q6ZPY2 NextBio:379471 Bgee:Q6ZPY2 Genevestigator:Q6ZPY2
GermOnline:ENSMUSG00000001415 Uniprot:Q6ZPY2
Length = 1017
Score = 158 (60.7 bits), Expect = 8.4e-09, Sum P(3) = 8.4e-09
Identities = 58/214 (27%), Positives = 94/214 (43%)
Query: 71 FKTFLSEATGFYHELILKIRAKYGLPLG---NFSEDSENRIIMDKDGKKSS-EVKKGLVS 126
++T L GFY L+L I++ Y L L +++ ++ + K S E+ ++
Sbjct: 111 YRTHLVAGIGFYQHLLLYIQSHYQLELQCCIDWTHVTDPLMGFKKPVSASGKEMDWAQMA 170
Query: 127 CHRCLIYLGDLARYKGLYGEGDSKSREXXXXXXXXXXXXXXWPSSGNPHHQLAILASYSS 186
CHRCL+YLGDL+RY+ D++ P G P +QL LA
Sbjct: 171 CHRCLVYLGDLSRYQNELAGVDTELLAERFYYQALSVA----PQIGMPFNQLGTLAGSKY 226
Query: 187 DELVAVYRYFRSLAVDSPFSTARDNLIVAFEKNRQSYSQMSGDVKSSTAKEAGRLTGKGR 246
+ A+Y Y R + + F A NL ++K + Y Q+ KS T K + K R
Sbjct: 227 YNVEAMYCYLRCIQSEVSFEGAYGNLKRLYDKAAKMYHQLK---KSETRKLS---PSKKR 280
Query: 247 GKVEVKLASKDADMETSAVKESVSGVQEKLKAFC 280
K ++K + S ++ S V +L + C
Sbjct: 281 CK-DIKRLLVNFMYLQSLLQPKSSSVDSELTSLC 313
Score = 69 (29.3 bits), Expect = 8.4e-09, Sum P(3) = 8.4e-09
Identities = 37/121 (30%), Positives = 51/121 (42%)
Query: 384 ERCMQ--LSDPSSSYLLPGVLVFVEWLACYPDIASGSDADERQATVRSNFWNQCISFLNK 441
ER +Q L + LLP V VF++WL PD+ A Q+ WN+ L+
Sbjct: 640 ERSLQEKLQALMAEGLLPAVKVFLDWLRTNPDLIIVC-AQSSQS-----LWNR----LSV 689
Query: 442 ILSLGPMSVA-DDEDLT-CFFNMSRYDEAETEN---RLALWEDIELRGFLPLLPAQTILD 496
+L+L P S D L C + E + L L ED+ LR PL A +
Sbjct: 690 LLNLLPASAELQDSGLALCSEVQGLLEGCELPDLPASLLLPEDMALRNLPPLRAAHRRFN 749
Query: 497 F 497
F
Sbjct: 750 F 750
Score = 42 (19.8 bits), Expect = 8.4e-09, Sum P(3) = 8.4e-09
Identities = 17/62 (27%), Positives = 25/62 (40%)
Query: 314 LSSGPEEELNFGSDANENALFIVRLVSILIFTVHNLKKENENQTYAEIVQRAVLLQNAFT 373
L++ EEE G A L I ++ I + VH+LK+ A I L +
Sbjct: 335 LTNEDEEECESGY-AFLPDLLIFQMAIICLMGVHSLKRAGSKHYSAAIAFTLALFSHLIN 393
Query: 374 AV 375
V
Sbjct: 394 HV 395
Score = 38 (18.4 bits), Expect = 1.0e-05, Sum P(3) = 1.0e-05
Identities = 9/33 (27%), Positives = 20/33 (60%)
Query: 559 SSDVSKTNDLILENQAEKAMNLGVVQAPQLYMD 591
SS+ S N+ L+ + + M G++ A ++++D
Sbjct: 632 SSNRSCRNERSLQEKLQALMAEGLLPAVKVFLD 664
>UNIPROTKB|H9KZJ8 [details] [associations]
symbol:SMG5 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0035303 "regulation of dephosphorylation"
evidence=IEA] [GO:0051721 "protein phosphatase 2A binding"
evidence=IEA] InterPro:IPR018834 InterPro:IPR019458 Pfam:PF10374
Pfam:PF10373 GeneTree:ENSGT00560000077120 EMBL:AADN02044345
EMBL:AADN02044346 EMBL:AADN02044347 Ensembl:ENSGALT00000014661
OMA:WQMVESA Uniprot:H9KZJ8
Length = 512
Score = 155 (59.6 bits), Expect = 4.4e-08, Sum P(2) = 4.4e-08
Identities = 46/160 (28%), Positives = 73/160 (45%)
Query: 71 FKTFLSEATGFYHELILKIRAKYGLPLG---NFSEDSENRIIMDKDGKKSS-EVKKGLVS 126
++T L GFY L+L I++ Y L L +++ ++ + K S E++ ++
Sbjct: 89 YRTHLVAGIGFYQHLLLYIQSHYQLELQCCIDWTHVTDPLMGCKKPVSASEKEMEWAQMA 148
Query: 127 CHRCLIYLGDLARYKGLYGEGDSKSREXXXXXXXXXXXXXXWPSSGNPHHQLAILASYSS 186
CHRCL+YLGDLARY+ D++ P G P +QL LA
Sbjct: 149 CHRCLVYLGDLARYQNELAGVDTELLAERFYYQALSVA----PQIGMPFNQLGTLAGSKY 204
Query: 187 DELVAVYRYFRSLAVDSPFSTARDNLIVAFEKNRQSYSQM 226
+ A Y Y R + + F A NL ++K + Y Q+
Sbjct: 205 YNVEATYCYLRCIQSEVSFEGASGNLKRLYDKAAKMYQQL 244
Score = 53 (23.7 bits), Expect = 4.4e-08, Sum P(2) = 4.4e-08
Identities = 19/63 (30%), Positives = 28/63 (44%)
Query: 314 LSSGPEEELNFGSDANENA-LFIVRLVSILIFTVHNLKKENENQTYAEIVQRAVLLQNAF 372
LSS E+E + S + L I R+V I +VH+L++ Q A I L +
Sbjct: 311 LSSVSEDEEEYESGYSFLPDLLIFRMVIICFMSVHSLRRAGSKQYSAAIAFTLALFSHLI 370
Query: 373 TAV 375
V
Sbjct: 371 NHV 373
Score = 42 (19.8 bits), Expect = 5.9e-07, Sum P(2) = 5.9e-07
Identities = 21/87 (24%), Positives = 33/87 (37%)
Query: 394 SSY-LLPGVLVFVEWLACYPDIASGSDADERQATVRSNFWNQCISFL-NKILSLGPMSVA 451
S Y LP +L+F + C+ + S A +Q + F S L N + +
Sbjct: 323 SGYSFLPDLLIFRMVIICFMSVHSLRRAGSKQYSAAIAFTLALFSHLINHVNIRLQAELE 382
Query: 452 DDEDLTCFFNMSRYDEAETENRLALWE 478
+ E+ F DE E L+ E
Sbjct: 383 EGENPVPAFRSDGTDEPEPREPLSSME 409
>WB|WBGene00004884 [details] [associations]
symbol:smg-6 species:6239 "Caenorhabditis elegans"
[GO:0018996 "molting cycle, collagen and cuticulin-based cuticle"
evidence=IMP] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IGI] [GO:0016246 "RNA
interference" evidence=IMP] [GO:0030538 "embryonic genitalia
morphogenesis" evidence=IMP] InterPro:IPR006596 GO:GO:0016246
GO:GO:0000184 GO:GO:0018996 SMART:SM00670 InterPro:IPR018834
InterPro:IPR019458 Pfam:PF10374 Pfam:PF10373 KO:K11124
GeneTree:ENSGT00560000077120 GO:GO:0030538 EMBL:FO081031
GeneID:175367 KEGG:cel:CELE_Y54F10AL.2 UCSC:Y54F10AL.2c CTD:175367
HOGENOM:HOG000125313 NextBio:887840 RefSeq:NP_497566.3
ProteinModelPortal:Q9BL68 SMR:Q9BL68 DIP:DIP-26703N
MINT:MINT-1081365 STRING:Q9BL68 PRIDE:Q9BL68
EnsemblMetazoa:Y54F10AL.2a WormBase:Y54F10AL.2a InParanoid:Q9BL68
OMA:SMLYRSA ArrayExpress:Q9BL68 Uniprot:Q9BL68
Length = 1241
Score = 115 (45.5 bits), Expect = 9.5e-05, Sum P(3) = 9.5e-05
Identities = 52/184 (28%), Positives = 78/184 (42%)
Query: 5 YEAIILEDHAFSEQHNVEYALW-QLHYRRIEELRAHYSAAVSSAGSNTSQATKVPLRSDR 63
Y +I+ D +S +E L+ Q Y+ IE LR ++A A + K+ L
Sbjct: 525 YSQVIIHDVIYSFTAGLEQKLFRQAFYKCIESLRTGSNSAAPDARLIRAVTQKLLLNG-- 582
Query: 64 VTKIRQQFKTFLSEATGFYHELILKIRAKYGLPLGNFSEDSENRIIMDKDGKK--SSEVK 121
+ T+ T F+ L + + G P + E E I + +K S+ K
Sbjct: 583 IVYYENLIATY---ETQFHVALTDALTWQSGSP--SDEELCEQYIELPIGIQKFDSATQK 637
Query: 122 KGLVSCHRCLIYLGDLARYKGLYGEGDSKSREXXXXXXXXXXXXXXWPSSGNPHHQLAIL 181
+ S R LI LGDL RYK L +G S WPS+G+P++QL I+
Sbjct: 638 TAIKSLSRHLISLGDLHRYKSLI-DG---SENYEISKSCYQKSSQLWPSTGHPYNQLGIV 693
Query: 182 ASYS 185
YS
Sbjct: 694 VYYS 697
Score = 64 (27.6 bits), Expect = 9.5e-05, Sum P(3) = 9.5e-05
Identities = 30/127 (23%), Positives = 59/127 (46%)
Query: 569 ILENQAEKAMNLGVVQAPQLYMDGEEEDEVIVFKPAVTEKRADVVGSTWM--YYDGFTPG 626
IL AEK+ G Q DG EE + + + E+R +G T + + + P
Sbjct: 1016 ILGFSAEKSEKSGE-NGKQKLGDGLEEPKSR--EQMIDEQRG--LGKTTIVIHPEYLIPD 1070
Query: 627 HNAAVGDLQFYAGSVSTSQDNLRQQSTYDSSLPLPVS-VGNILPQHLQS-VQPHAPKQLM 684
N +GDLQ + T+Q N + Q +++ + + + P +S + H P+++
Sbjct: 1071 TNVLIGDLQLMKNLLETAQKNKKFQILVPTTVLDELQYIAKLSPLDSKSNSEAHDPERIS 1130
Query: 685 EEEVSLA 691
+ ++++A
Sbjct: 1131 KAKIAVA 1137
Score = 54 (24.1 bits), Expect = 9.5e-05, Sum P(3) = 9.5e-05
Identities = 47/228 (20%), Positives = 95/228 (41%)
Query: 197 RSLAVDSPFSTARDNLIVAFEKNRQSYSQMSG--DVKSSTAKEAGRLTGKGRGKVEVKL- 253
R+LA P+ A+D L + R ++ D +S KE G + + + ++ +
Sbjct: 731 RALACSHPYEVAKDRLKQRIDAMRTKVAKYQPVLDKESGIVKEQGNVLRRLQRIRQIWIH 790
Query: 254 ----ASKDA-------DMETSAVKESVSGVQEKLKAF-CTRFVRLNGILFTRTSLETFAE 301
S+D D+ ++ S + + + ++ C F G+L T+ ++ F E
Sbjct: 791 PITETSQDGTGERIVDDVLVHFMEHSKAKLHRRAVSYLCDTF----GMLVTKIGMDHF-E 845
Query: 302 VLALVSSGLCELLSSGPEEELNFGSDANENALFIVRLVSILIFTVH-NLKKENENQTYAE 360
++ + GL L +S + E +F +D +V+ ++ I+ N K + + ++
Sbjct: 846 SVSERAFGL--LYASLSKSETDFSADQ------LVKFSAMFIYAAQVNFDKSTPSTSKSQ 897
Query: 361 IVQRAVLLQNAFTAVFELMGHIIERCMQLSDPSSSYLLPGVLVFVEWL 408
+ AV + FT L+ HI ++ LLP V W+
Sbjct: 898 L-HTAV--RTIFTYFLVLLEHI--------STHTTLLLPAANVIATWI 934
>FB|FBgn0039260 [details] [associations]
symbol:Smg6 "Smg6" species:7227 "Drosophila melanogaster"
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IDA;IMP] [GO:0035195 "gene
silencing by miRNA" evidence=IMP] [GO:0016246 "RNA interference"
evidence=IMP] [GO:0004540 "ribonuclease activity" evidence=IDA]
[GO:0007274 "neuromuscular synaptic transmission" evidence=IDA]
[GO:0050808 "synapse organization" evidence=IDA] [GO:0043487
"regulation of RNA stability" evidence=IMP] InterPro:IPR006596
GO:GO:0000184 GO:GO:0007274 GO:GO:0050808 GO:GO:0004540
SMART:SM00670 InterPro:IPR018834 Pfam:PF10373 eggNOG:NOG313444
GO:GO:0043487 EMBL:AJ556816 ProteinModelPortal:Q86BS8 SMR:Q86BS8
STRING:Q86BS8 PRIDE:Q86BS8 FlyBase:FBgn0039260 InParanoid:Q86BS8
OrthoDB:EOG4K3JCB ArrayExpress:Q86BS8 Bgee:Q86BS8 Uniprot:Q86BS8
Length = 949
Score = 123 (48.4 bits), Expect = 0.00014, Sum P(3) = 0.00014
Identities = 37/123 (30%), Positives = 57/123 (46%)
Query: 107 RIIMDKDGKK---SSEVKKGL-VSCHRCLIYLGDLARYKGLYGEGDSKSREXXXXXXXXX 162
R++ DK K SS L V R LI LGDL RY+ K+ +
Sbjct: 260 RMLYDKLMAKCVASSRCDSALKVVAQRLLICLGDLTRYR----VNHVKATDYMEAARYYQ 315
Query: 163 XXXXXWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAVDSPFSTARDNLIVAFEKNRQS 222
P +G P +QLA+++ Y AVY Y RSL + +A+++L+ F++ R+
Sbjct: 316 RAQELVPGNGAPFNQLAVISIYHHKRFDAVYYYVRSLLTSNSIQSAKESLLDLFDEIRRK 375
Query: 223 YSQ 225
Y +
Sbjct: 376 YEE 378
Score = 59 (25.8 bits), Expect = 0.00014, Sum P(3) = 0.00014
Identities = 16/48 (33%), Positives = 26/48 (54%)
Query: 471 ENRLALWEDIELRGFLPLLPAQTILDFSRKISFGGDGNKERKDRVKRI 518
+N + L ED+ LRGF PL +D+ ++ G + +RV+RI
Sbjct: 618 KNEILLDEDVALRGFTPLGRETLSMDYLKR----GSERLQFFERVRRI 661
Score = 45 (20.9 bits), Expect = 0.00014, Sum P(3) = 0.00014
Identities = 7/33 (21%), Positives = 19/33 (57%)
Query: 1 MRENYEAIILEDHAFSEQHNVEYALWQLHYRRI 33
+++ ++ ++LE F +H V+ W+L + +
Sbjct: 200 LQDAFKQLLLEQLKFVCEHKVDVFFWKLLFYNV 232
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.315 0.132 0.381 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 929 899 0.00088 122 3 11 22 0.43 34
37 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 32
No. of states in DFA: 626 (67 KB)
Total size of DFA: 420 KB (2203 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 84.95u 0.10s 85.05t Elapsed: 00:00:04
Total cpu time: 84.96u 0.10s 85.06t Elapsed: 00:00:04
Start: Mon May 20 17:39:07 2013 End: Mon May 20 17:39:11 2013