BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002377
(929 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q86US8|EST1A_HUMAN Telomerase-binding protein EST1A OS=Homo sapiens GN=SMG6 PE=1 SV=2
Length = 1419
Score = 154 bits (390), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 152/540 (28%), Positives = 235/540 (43%), Gaps = 109/540 (20%)
Query: 5 YEAIILEDHAFSEQHNVEYALWQ-LHYRRIEELRAHYSAAVSSAGSNTSQATKVPLRSDR 63
YE IL D FS+ NV+ LW+ Y+ IE+ R Q K P +
Sbjct: 623 YERCILLDIEFSDNQNVDQILWKNAFYQVIEKFR---------------QLVKDP-NVEN 666
Query: 64 VTKIRQQFKTFLSEATGFYHELILKIRAKYGLPLGNFSEDSENRIIMDKDGKKSSEVKKG 123
+IR + L E + F+ L+ K++ Y L ++ + I K +K+ VK
Sbjct: 667 PEQIRNRLLELLDEGSDFFDSLLQKLQVTYKFKLEDYMD---GLAIRSKPLRKT--VKYA 721
Query: 124 LVSCHRCLIYLGDLARYKGLYGEGDSKSREYAAASSYYLQAASLWPSSGNPHHQLAILAS 183
L+S RC+I GD+ARY+ E S + Y A S+YL+A + P +G P++QLA+LA
Sbjct: 722 LISAQRCMICQGDIARYR----EQASDTANYGKARSWYLKAQHIAPKNGRPYNQLALLAV 777
Query: 184 YSSDELVAVYRYFRSLAVDSPFSTARDNLIVAFEKNRQSYSQM----------SGDVKSS 233
Y+ +L AVY Y RSLA +P TA+++L+ FE+ ++ QM S D
Sbjct: 778 YTRRKLDAVYYYMRSLAASNPILTAKESLMSLFEETKRKAEQMEKKQHEEFDLSPDQWRK 837
Query: 234 TAKEAGRLTGKGRGKVEVKL------------ASKDADMETSAVKESVSGVQEKLKAFCT 281
K R G ++E+ + + KD++ E S S + K F
Sbjct: 838 GKKSTFRHVGDDTTRLEIWIHPSHPRSSQGTESGKDSEQENGLGSLSPSDLN---KRFIL 894
Query: 282 RFVRLNGILFTRTSLETFAEVLALVSSGLCELLSSGPEEELNFGSDANENALFIVRLVSI 341
F+ +G LFTR +ETF V V LL P GS +++L++I
Sbjct: 895 SFLHAHGKLFTRIGMETFPAVAEKVLKEFQVLLQHSPSP---IGSTR------MLQLMTI 945
Query: 342 LIFTVHNLKKENENQTYAEIVQRAVLLQNAFTAVFELMGHIIERCM---------QLSDP 392
+F VHN + ++ ++E R+V+ + A + ++ RC QLS P
Sbjct: 946 NMFAVHNSQLKD---CFSEEC-RSVIQEQAAALGLAMFSLLVRRCTCLLKESAKAQLSSP 1001
Query: 393 S----------SSY------LLPGVLVFVEWLACYPDIASGSDAD-ERQATVRSNFWNQC 435
SS+ LLP V V+ +W+ YPD + + + V + W+
Sbjct: 1002 EDQDDQDDIKVSSFVPDLKELLPSVKVWSDWMLGYPDTWNPPPTSLDLPSHVAVDVWSTL 1061
Query: 436 ISFLNKILSLG----PMSVADDEDLTCFFNMSRYDEAETENRLALWEDIELRGFLPLLPA 491
F N + ++ P+ D+DLT L L ED L GF+PLL A
Sbjct: 1062 ADFCNILTAVNQSEVPLYKDPDDDLTL---------------LILEEDRLLSGFVPLLAA 1106
>sp|Q5RAK6|EST1A_PONAB Telomerase-binding protein EST1A OS=Pongo abelii GN=SMG6 PE=2 SV=1
Length = 1419
Score = 151 bits (381), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 151/540 (27%), Positives = 234/540 (43%), Gaps = 109/540 (20%)
Query: 5 YEAIILEDHAFSEQHNVEYALWQ-LHYRRIEELRAHYSAAVSSAGSNTSQATKVPLRSDR 63
YE IL D FS+ NV+ LW+ Y+ IE+ R Q K P +
Sbjct: 623 YERCILLDIEFSDNQNVDQILWKNAFYQVIEKFR---------------QLVKDP-NVEN 666
Query: 64 VTKIRQQFKTFLSEATGFYHELILKIRAKYGLPLGNFSEDSENRIIMDKDGKKSSEVKKG 123
+IR + L E + F+ L+ K++ Y L ++ + I K +K+ VK
Sbjct: 667 PEQIRNRLLELLDEGSDFFDSLLQKLQVTYKFKLEDYID---GLAIRSKPLRKT--VKYA 721
Query: 124 LVSCHRCLIYLGDLARYKGLYGEGDSKSREYAAASSYYLQAASLWPSSGNPHHQLAILAS 183
L+S RC+I GD+ARY+ E + Y A S+YL+A + P +G P++QLA+LA
Sbjct: 722 LISAQRCMICQGDIARYR----EQARDTANYGKARSWYLKAQHIAPKNGRPYNQLALLAV 777
Query: 184 YSSDELVAVYRYFRSLAVDSPFSTARDNLIVAFEKNRQSYSQM----------SGDVKSS 233
Y+ +L AVY Y RSLA +P TA+++L+ FE+ ++ QM S D
Sbjct: 778 YTRRKLDAVYYYMRSLAASNPILTAKESLMSLFEETKRKAEQMEKKQHEEFELSPDQWRK 837
Query: 234 TAKEAGRLTGKGRGKVEVKL------------ASKDADMETSAVKESVSGVQEKLKAFCT 281
K R G ++E+ + + KD++ E S S + K F
Sbjct: 838 GKKSTFRHVGDDTTRLEIWIHPSHPRSSQGTESGKDSEQENGLGSLSPSDLN---KRFIL 894
Query: 282 RFVRLNGILFTRTSLETFAEVLALVSSGLCELLSSGPEEELNFGSDANENALFIVRLVSI 341
F+ +G LFTR +ETF V V LL P GS +++L++I
Sbjct: 895 SFLHAHGKLFTRIGMETFPAVAEKVLKEFQVLLQHSPSP---IGSTR------MLQLMTI 945
Query: 342 LIFTVHNLKKENENQTYAEIVQRAVLLQNAFTAVFELMGHIIERCM---------QLSDP 392
+F VHN + ++ ++E R+V+ + A + ++ RC QLS P
Sbjct: 946 NMFAVHNSQLKD---CFSEEC-RSVIQEQAAALGLAMFSLLVCRCTYLLKESAKAQLSSP 1001
Query: 393 S----------SSY------LLPGVLVFVEWLACYPDIASGSDAD-ERQATVRSNFWNQC 435
SS+ LLP V V+ +W+ YPD + + + V + W+
Sbjct: 1002 EDQDDQDDIKVSSFVPDLKELLPSVKVWSDWMLGYPDTWNPPPTSLDLPSHVAVDVWSTL 1061
Query: 436 ISFLNKILSLG----PMSVADDEDLTCFFNMSRYDEAETENRLALWEDIELRGFLPLLPA 491
F N + ++ P+ D+DLT L L ED L GF+PLL A
Sbjct: 1062 ADFCNILTAVNQSEVPLYKDPDDDLTL---------------LILEEDRLLSGFVPLLAA 1106
>sp|P61406|EST1A_MOUSE Telomerase-binding protein EST1A OS=Mus musculus GN=Smg6 PE=2 SV=1
Length = 1418
Score = 149 bits (377), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 150/540 (27%), Positives = 236/540 (43%), Gaps = 109/540 (20%)
Query: 5 YEAIILEDHAFSEQHNVEYALWQ-LHYRRIEELRAHYSAAVSSAGSNTSQATKVPLRSDR 63
YE IL D FS+ NV+ LW+ Y+ IE+ R Q K P S+
Sbjct: 622 YERCILLDIEFSDSQNVDQILWKNAFYQVIEKFR---------------QLLKDP-NSEN 665
Query: 64 VTKIRQQFKTFLSEATGFYHELILKIRAKYGLPLGNFSEDSENRIIMDKDGKKSSEVKKG 123
+IR + L E + F+ L+ K++ Y L ++ + I K +K+ VK
Sbjct: 666 PEQIRNRLLELLDEGSDFFDSLLQKLQVTYKFKLEDYMD---GLAIRSKPLRKT--VKYA 720
Query: 124 LVSCHRCLIYLGDLARYKGLYGEGDSKSREYAAASSYYLQAASLWPSSGNPHHQLAILAS 183
L+S R +I GD++RY+ E + + Y A S+YL+A + P +G P++QLA+LA
Sbjct: 721 LISAQRSMICQGDISRYR----EQANDTANYGKARSWYLKAQHIAPKNGRPYNQLALLAV 776
Query: 184 YSSDELVAVYRYFRSLAVDSPFSTARDNLIVAFEKNRQSYSQ----------MSGDVKSS 233
Y+ +L AVY Y RSLA +P TA+++L+ FE+ ++ Q MS D
Sbjct: 777 YTRRKLDAVYYYMRSLAASNPILTAKESLMSLFEETKRKAEQMEKKQHEEFDMSPDKWRK 836
Query: 234 TAKEAGRLTGKGRGKVEVKL------------ASKDADMETSAVKESVSGVQEKLKAFCT 281
K R G ++E+ + + KD++ E S S + K F
Sbjct: 837 GKKSTFRHVGDDTTRLEIWIHPSHSRSAQGTESGKDSEQENGLGSLSPSDLN---KRFIL 893
Query: 282 RFVRLNGILFTRTSLETFAEVLALVSSGLCELLSSGPEEELNFGSDANENALFIVRLVSI 341
F+ +G LFTR +ETF V V LL P GS +++L++I
Sbjct: 894 SFLHAHGKLFTRIGMETFPAVAEKVLKEFQVLLQHSPSP---IGSTR------MLQLMTI 944
Query: 342 LIFTVHNLKKENENQTYAEIVQRAVLLQNAFTAVFELMGHIIERCM---------QLSDP 392
+F VHN + ++ ++E R+V+ + A + + +++RC QLS P
Sbjct: 945 NMFAVHNSQLKD---CFSEEC-RSVIQEQAASLGLAMFSLLVQRCTCLLKDSAKAQLSSP 1000
Query: 393 S----------SSY------LLPGVLVFVEWLACYPDIASGSDAD-ERQATVRSNFWNQC 435
SS+ LLP V V+ +W+ YPD + + V + W+
Sbjct: 1001 EDQEDQDDIKVSSFVPDLKELLPSVKVWSDWMLGYPDTWNPPPTSLDLPLQVAVDVWSTL 1060
Query: 436 ISFLNKILSLG----PMSVADDEDLTCFFNMSRYDEAETENRLALWEDIELRGFLPLLPA 491
F N + ++ P+ D+DLT L L ED L GF+PLL A
Sbjct: 1061 ADFCNILTAVNQSEVPLYKDPDDDLTL---------------LILEEDRLLSGFVPLLAA 1105
>sp|Q5RJH6|SMG7_MOUSE Protein SMG7 OS=Mus musculus GN=Smg7 PE=1 SV=1
Length = 1138
Score = 138 bits (348), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 160/596 (26%), Positives = 250/596 (41%), Gaps = 144/596 (24%)
Query: 1 MRENYEAIILEDHAFSEQHNVEYALWQLHYR-RIEELRAHYSAAVSSAGSNTSQATKVPL 59
+++ Y+ +++ D ++ VE LW ++ +I L+ A + A N S+
Sbjct: 36 LQDLYQKMLVTDLEYALDKKVEQDLWNHAFKNQITTLQGQ---AKNRANPNRSE------ 86
Query: 60 RSDRVTKIRQQFKTFLSEATGFYHELILKIRAKYGLPLGNFSEDSENRIIMDKDGKKSSE 119
++ FL A+GFY +L+ ++ + + L + S+ II +K S+
Sbjct: 87 -------VQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHSSTI 139
Query: 120 VKKGLVSC----HRCLIYLGDLARYKGLYGEGDSKSREYAAASSYYLQAASLWPSSGNPH 175
VK SC CL++LGD+ARY+ + + A SYY AA L PS+G P+
Sbjct: 140 VKPQSSSCSYICQHCLVHLGDIARYRN----------QTSQAESYYRHAAQLVPSNGQPY 189
Query: 176 HQLAILASYSSDELVAVYRYFRSLAVDSPFSTARDNLIVAFEKNRQSYSQMSGDVKSSTA 235
+QLAILAS D L ++ Y RS+AV PF A NL A K +S
Sbjct: 190 NQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALES------------- 236
Query: 236 KEAGRLTGKGRGKVEVKLASKDADMETSAVKESVSGVQEKLKAFCTRFVRLNGILFTRTS 295
R +++ K GV + +KA F++ +G ++ S
Sbjct: 237 ----------RDELKTKW-----------------GVSDFIKA----FIKFHGHVYLSKS 265
Query: 296 LETFAEVLALVSSGLCELLSSGPEEELNFGSDANENALFIVRLVSILIFTVHNLK---KE 352
LE + + + LL F N L V + I +F +H+L+ E
Sbjct: 266 LEKLSPLREKLEEQFKRLL---------FQKAFNSQQL--VHVTVINLFQLHHLRDFSNE 314
Query: 353 NENQTYAEIVQRAVLLQNAFTAVFELMGHIIERCMQLSDPSSS---YLLPGVLVFVEWLA 409
E +Y++ Q L A+F I+ +C +D S Y LP V V ++WL
Sbjct: 315 TEQHSYSQDEQ---LCWTQLLALFMSFLGILCKCPLQNDSQESNNAYPLPAVKVSMDWLR 371
Query: 410 CYPDIASGSDADERQATVRSNFWNQCISFLNKILSLGPMSVADDEDLTCFFNMSRYDEAE 469
P + + DERQ W IS LN S P R D+
Sbjct: 372 LRPRVFQEAVVDERQY-----IWPWLISLLN---SFHP----------------REDDLS 407
Query: 470 TENRLALWEDIELRGFLPLLPAQTILDFSRKISFGGDGNKE---RKDRVKRIFAAGKALA 526
N L E+ EL+GFL L P+ LDFS+ G G+KE R+ R +R+ + GK +A
Sbjct: 408 NTNATPLPEEFELQGFLALRPSFRNLDFSKGHQ-GITGDKEGQQRRIRQQRLISIGKWIA 466
Query: 527 NVIMVDQKP--VCFDSKVKKFVIGTEPLDDITFTSSDVSKTNDLILENQAEKAMNL 580
D +P + +++V K + TE +LILE+ +E NL
Sbjct: 467 -----DNQPRLIQCENEVGKLLFITE--------------IPELILEDPSEAKENL 503
>sp|Q92540|SMG7_HUMAN Protein SMG7 OS=Homo sapiens GN=SMG7 PE=1 SV=2
Length = 1137
Score = 134 bits (338), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 162/598 (27%), Positives = 254/598 (42%), Gaps = 147/598 (24%)
Query: 1 MRENYEAIILEDHAFSEQHNVEYALWQLHYR-RIEELRAHYSAAVSSAGSNTSQATKVPL 59
+++ Y+ +++ D ++ VE LW ++ +I L+ A + A N S+
Sbjct: 36 LQDLYQKMLVTDLEYALDKKVEQDLWNHAFKNQITTLQGQ---AKNRANPNRSE------ 86
Query: 60 RSDRVTKIRQQFKTFLSEATGFYHELILKIRAKYGLPLGNFSEDSENRIIMDKDGKKSSE 119
++ FL A+GFY +L+ ++ + + L + S+ II +K S+
Sbjct: 87 -------VQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAI 139
Query: 120 VKKGLVSC----HRCLIYLGDLARYKGLYGEGDSKSREYAAASSYYLQAASLWPSSGNPH 175
VK SC CL++LGD+ARY+ + + A SYY AA L PS+G P+
Sbjct: 140 VKPQSSSCSYICQHCLVHLGDIARYRN----------QTSQAESYYRHAAQLVPSNGQPY 189
Query: 176 HQLAILASYSSDELVAVYRYFRSLAVDSPFSTARDNLIVAFEKNRQSYSQMSGDVKSSTA 235
+QLAILAS D L ++ Y RS+AV PF A NL A K +S
Sbjct: 190 NQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALES------------- 236
Query: 236 KEAGRLTGKGRGKVEVKLASKDADMETSAVKESVSGVQEKLKAFCTRFVRLNGILFTRTS 295
R +V+ K GV + +KA F++ +G ++ S
Sbjct: 237 ----------RDEVKTKW-----------------GVSDFIKA----FIKFHGHVYLSKS 265
Query: 296 LETFAEVLALVSSGLCELLSSGPEEELNFGSDANENALFIVRLVSILIFTVHNLK---KE 352
LE + + + LL F N L V + I +F +H+L+ E
Sbjct: 266 LEKLSPLREKLEEQFKRLL---------FQKAFNSQQL--VHVTVINLFQLHHLRDFSNE 314
Query: 353 NENQTYAEIVQRAVLLQNAFTAVFELMGHIIERCMQLSDPS-----SSYLLPGVLVFVEW 407
E TY++ Q L A+F I+ +C L + S ++Y LP V V ++W
Sbjct: 315 TEQHTYSQDEQ---LCWTQLLALFMSFLGILCKC-PLQNESQEESYNAYPLPAVKVSMDW 370
Query: 408 LACYPDIASGSDADERQATVRSNFWNQCISFLNKILSLGPMSVADDEDLTCFFNMSRYDE 467
L P + + DERQ W IS LN S P +EDL+
Sbjct: 371 LRLRPRVFQEAVVDERQY-----IWPWLISLLN---SFHP----HEEDLSSI-------- 410
Query: 468 AETENRLALWEDIELRGFLPLLPAQTILDFSRKISFGGDGNKE---RKDRVKRIFAAGKA 524
+ L E+ EL+GFL L P+ LDFS+ G G+KE R+ R +R+ + GK
Sbjct: 411 ----SATPLPEEFELQGFLALRPSFRNLDFSKGHQ-GITGDKEGQQRRIRQQRLISIGKW 465
Query: 525 LANVIMVDQKP--VCFDSKVKKFVIGTEPLDDITFTSSDVSKTNDLILENQAEKAMNL 580
+A D +P + +++V K + TE +LILE+ +E NL
Sbjct: 466 IA-----DNQPRLIQCENEVGKLLFITE--------------IPELILEDPSEAKENL 504
>sp|Q9UPR3|SMG5_HUMAN Protein SMG5 OS=Homo sapiens GN=SMG5 PE=1 SV=3
Length = 1016
Score = 89.4 bits (220), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 93/318 (29%), Positives = 143/318 (44%), Gaps = 39/318 (12%)
Query: 71 FKTFLSEATGFYHELILKIRAKYGLPLG---NFSEDSENRIIMDKDGKKS-SEVKKGLVS 126
++T L GFY L+L I++ Y L L +++ ++ I K S E+ ++
Sbjct: 111 YRTHLVAGIGFYQHLLLYIQSHYQLELQCCIDWTHVTDPLIGCKKPVSASGKEMDWAQMA 170
Query: 127 CHRCLIYLGDLARYKGLYGEGDSKSREYAAASSYYLQAASLWPSSGNPHHQLAILASYSS 186
CHRCL+YLGDL+RY+ D++ A +Y QA S+ P G P +QL LA
Sbjct: 171 CHRCLVYLGDLSRYQNELAGVDTE----LLAERFYYQALSVAPQIGMPFNQLGTLAGSKY 226
Query: 187 DELVAVYRYFRSLAVDSPFSTARDNLIVAFEKNRQSYSQMSGDVKSSTAKEAGRLTGKGR 246
+ A+Y Y R + + F A NL ++K + Y Q+ K T K + GK R
Sbjct: 227 YNVEAMYCYLRCIQSEVSFEGAYGNLKRLYDKAAKMYHQLK---KCETRKLS---PGKKR 280
Query: 247 GKVEVKLASKDADMETSAVKESVSGVQEKLKAFCTRFVRLNGILFTRTSLETFAEVLALV 306
K ++K + S ++ S V +L + C ++ LE F L +
Sbjct: 281 CK-DIKRLLVNFMYLQSLLQPKSSSVDSELTSLC------------QSVLEDFNLCLFYL 327
Query: 307 SSGLCELLSSGPEEELNFGSDANENALFIVRLVSILIFTVHNLKKENENQTYAEIVQRAV 366
S L+S EEE G A L I ++V I + VH+L++ Q A I
Sbjct: 328 PSSPNLSLASEDEEEYESGY-AFLPDLLIFQMVIICLMCVHSLERAGSKQYSAAI----- 381
Query: 367 LLQNAFT-AVF-ELMGHI 382
AFT A+F L+ H+
Sbjct: 382 ----AFTLALFSHLVNHV 395
>sp|Q6ZPY2|SMG5_MOUSE Protein SMG5 OS=Mus musculus GN=Smg5 PE=2 SV=2
Length = 1017
Score = 83.6 bits (205), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 89/317 (28%), Positives = 138/317 (43%), Gaps = 39/317 (12%)
Query: 71 FKTFLSEATGFYHELILKIRAKYGLPLG---NFSEDSENRIIMDKDGKKS-SEVKKGLVS 126
++T L GFY L+L I++ Y L L +++ ++ + K S E+ ++
Sbjct: 111 YRTHLVAGIGFYQHLLLYIQSHYQLELQCCIDWTHVTDPLMGFKKPVSASGKEMDWAQMA 170
Query: 127 CHRCLIYLGDLARYKGLYGEGDSKSREYAAASSYYLQAASLWPSSGNPHHQLAILASYSS 186
CHRCL+YLGDL+RY+ D++ A +Y QA S+ P G P +QL LA
Sbjct: 171 CHRCLVYLGDLSRYQNELAGVDTE----LLAERFYYQALSVAPQIGMPFNQLGTLAGSKY 226
Query: 187 DELVAVYRYFRSLAVDSPFSTARDNLIVAFEKNRQSYSQMSGDVKSSTAKEAGRLTGKGR 246
+ A+Y Y R + + F A NL ++K + Y Q+ KS T K + K R
Sbjct: 227 YNVEAMYCYLRCIQSEVSFEGAYGNLKRLYDKAAKMYHQLK---KSETRKLS---PSKKR 280
Query: 247 GKVEVKLASKDADMETSAVKESVSGVQEKLKAFCTRFVRLNGILFTRTSLETFAEVLALV 306
K ++K + S ++ S V +L + C ++ LE F L +
Sbjct: 281 CK-DIKRLLVNFMYLQSLLQPKSSSVDSELTSLC------------QSVLEDFNLCLFYL 327
Query: 307 SSGLCELLSSGPEEELNFGSDANENALFIVRLVSILIFTVHNLKKENENQTYAEIVQRAV 366
S L++ EEE G A L I ++ I + VH+LK+ A I
Sbjct: 328 PSSPNLGLTNEDEEECESGY-AFLPDLLIFQMAIICLMGVHSLKRAGSKHYSAAI----- 381
Query: 367 LLQNAFTAVFELMGHII 383
AFT L H+I
Sbjct: 382 ----AFT--LALFSHLI 392
>sp|O74804|EST1_SCHPO Telomere elongation protein est1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=est1 PE=1 SV=1
Length = 490
Score = 39.3 bits (90), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 51/102 (50%), Gaps = 10/102 (9%)
Query: 122 KGLVSCHRCLIYLGDLARYKGLYGEGDSKSREYAAASSYYLQAASLWPSSGNPHHQLAIL 181
+ L + C IYLGD+ARY K Y A +Y A P +G +Q+A++
Sbjct: 163 EALECVYNCFIYLGDMARYS---STCLKKRGAYDRALGFYDLAHRTLPGNGMHRNQIAVV 219
Query: 182 ASYSSDELV--AVYRYFRSLAVDSPFSTARDNL---IVAFEK 218
++SDE + ++Y + +L + P +A NL ++AF +
Sbjct: 220 --WASDECIVESIYWFSSALCSEDPPKSALLNLLKQLIAFYR 259
>sp|Q03466|EBS1_YEAST Protein EBS1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=EBS1 PE=1 SV=1
Length = 884
Score = 38.9 bits (89), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 44/97 (45%), Gaps = 2/97 (2%)
Query: 128 HRCLIYLGDLARYKGLYGEGDSKS--REYAAASSYYLQAASLWPSSGNPHHQLAILASYS 185
HRCL++LG RYK L E +K + + ++ A+ + PS+G + Q + +
Sbjct: 197 HRCLLFLGTAYRYKTLLEEISNKYSISNFKKSLDFFRLASLVLPSAGETYSQAGAIFLQT 256
Query: 186 SDELVAVYRYFRSLAVDSPFSTARDNLIVAFEKNRQS 222
+ +AV+ + + + P + N N+ S
Sbjct: 257 GNLGIAVFNFVKGMMTKMPSPVSIKNFGALMVDNKSS 293
>sp|O14338|YB33_SCHPO Uncharacterized serine-rich protein C2F12.03c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC2F12.03c PE=1 SV=1
Length = 891
Score = 37.0 bits (84), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 124 LVSC-HRCLIYLGDLARYKGLYGEGDSKSREYAAASSYYLQAASLWPSSGNPHHQLAIL 181
LV C +R LIY+GD+ RY L +Y + YY+ AA++ P G HQL ++
Sbjct: 294 LVLCVYRSLIYIGDVHRY--LAEVRSPNVPDYQVSRRYYVMAANVAPDYGVHFHQLGLI 350
>sp|Q3ILF3|SYA_PSEHT Alanine--tRNA ligase OS=Pseudoalteromonas haloplanktis (strain TAC
125) GN=alaS PE=3 SV=1
Length = 868
Score = 35.4 bits (80), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 53/122 (43%), Gaps = 13/122 (10%)
Query: 325 GSDANENALFIVRLVSILIFTVHNLKKENENQTYAEIVQRAVLLQNAFTAVFELMGHIIE 384
G+ F +LV+ LI E Q Y E+ ++ +++ E G +E
Sbjct: 313 GNKLGAQGAFFYKLVAALI--------EQMGQAYPELAKQQEIIEKVLRIEEEQFGKTLE 364
Query: 385 RCMQLSDPSSSYL----LPGVLVFVEW-LACYPDIASGSDADERQATVRSNFWNQCISFL 439
R + + + S S L +PG LVF + +P + A ERQ T+ + + +C++
Sbjct: 365 RGLAILEESLSDLKGDVIPGDLVFKLYDTYGFPADLTADVARERQMTIDNKGFEECMAVQ 424
Query: 440 NK 441
K
Sbjct: 425 RK 426
>sp|Q751B2|EBS1_ASHGO Protein EBS1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 /
FGSC 9923 / NRRL Y-1056) GN=EBS1 PE=3 SV=1
Length = 775
Score = 34.3 bits (77), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 63/293 (21%), Positives = 118/293 (40%), Gaps = 48/293 (16%)
Query: 24 ALW-QLHY---RRIEELRAHYSAAVSSAGSNTSQATKVPLRS-----DRVTKIRQQFKTF 74
A+W ++HY + ++ RAH + +A + T + R +++ KI +QF
Sbjct: 67 AVWKEIHYPIFKWFQQWRAH---LLEAAEGGPQERTYISFRRMNGKLNKIFKIIRQF--- 120
Query: 75 LSEATGFYHELILKIRAKYG----LPLG-----NFSEDSENRIIMDKDGKKSSEVKKGLV 125
Y+ L+ ++ +Y LP G N E + + D S ++
Sbjct: 121 -------YNGLVQQLFDRYDFGKLLPAGVIRELNVQSGGELQTLDDS----SYFTILCVM 169
Query: 126 SCHRCLIYLGDLARYKGLYGEGDSKSR--EYAAASSYYLQAASLWPSSGNPHHQLAILAS 183
S RCL+YLG RYK + + ++ + Y++ A + PS G + Q ++
Sbjct: 170 SLQRCLLYLGCCHRYKCCCSKLSKRFHISDFDDSMRYFMLAKQIVPSVGETYLQEGLVYV 229
Query: 184 YSSDELVAVYRYFRSLAVDSPFSTARDNL--IVAFEKNRQSYSQMSGDVKSSTAKEAGRL 241
+ + A Y + R P NL IVA + + +++ G +K +KE+
Sbjct: 230 QTGNYGHAAYAFMRGSLSRMPTDAGIPNLESIVA-DASSGLFAKHQGILKRLRSKESDSN 288
Query: 242 TGKGRGKVEVKL--------ASKDADMETSAVKESVSGVQEKLKAFCTRFVRL 286
R +E A + + S ++ + EK+++ R VRL
Sbjct: 289 KLINREVLEFYFLALFSSVYAPESWSKQGSDIRHCTEILFEKVRSRYARNVRL 341
>sp|Q4JW06|SYFA_CORJK Phenylalanine--tRNA ligase alpha subunit OS=Corynebacterium
jeikeium (strain K411) GN=pheS PE=3 SV=1
Length = 351
Score = 33.9 bits (76), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 53/131 (40%), Gaps = 23/131 (17%)
Query: 199 LAVDSPFSTARDNLIVAFEKNRQSYSQMSGDVKSSTAKEAGRLTGKGRGKVEVKLASKDA 258
L D+P AR +L G + K+AGRL RG+VE + A A
Sbjct: 45 LGDDAPIPAARRSL---------------GSLPKDQRKDAGRLVNMARGRVEKRFAQVKA 89
Query: 259 DMETSAVKESVSGVQEKLKAFCTRFVRLNGILFTRTSLETFAEVLALVSSGLCELLSSGP 318
++E +E + + + TR G + + +E +A + G+ ++ GP
Sbjct: 90 ELERKRNEEVLRAERIDVTEPTTR-----GQRGAQHPITILSEQIADIFVGMGWEIADGP 144
Query: 319 E---EELNFGS 326
E E NF S
Sbjct: 145 EVEAEYFNFDS 155
>sp|Q3A4L9|GLYA_PELCD Serine hydroxymethyltransferase OS=Pelobacter carbinolicus (strain
DSM 2380 / Gra Bd 1) GN=glyA PE=3 SV=1
Length = 416
Score = 33.9 bits (76), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 859 GTGFPFPGKQFPAVQSHAEKQKGWQEYQSVEHLKLQHEQQLL 900
G+ F GK F V +K+ G+ +Y+ VE L L+H+ LL
Sbjct: 127 GSPVNFSGKLFNIVSYGVQKETGYIDYEEVERLALEHKPTLL 168
>sp|P90986|TY3H_CAEEL Tyrosine 3-monooxygenase OS=Caenorhabditis elegans GN=cat-2 PE=1
SV=4
Length = 519
Score = 33.5 bits (75), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 22 EYALWQLHYRRIEELRAHYSAAVSSAGSNTSQATKVPLRSDRVTKIRQQFKTFLSEATGF 81
E+A W+ Y ++ +L ++ AV Q KV L +DR+ +IR K FL + TGF
Sbjct: 245 EHATWKAVYEKLGDLHLSHTCAVYRQNLKILQEEKV-LTADRIPQIRDVNK-FLQKKTGF 302
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.131 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 346,372,960
Number of Sequences: 539616
Number of extensions: 15127613
Number of successful extensions: 46625
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 48
Number of HSP's that attempted gapping in prelim test: 46462
Number of HSP's gapped (non-prelim): 162
length of query: 929
length of database: 191,569,459
effective HSP length: 127
effective length of query: 802
effective length of database: 123,038,227
effective search space: 98676658054
effective search space used: 98676658054
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 66 (30.0 bits)