Your job contains 1 sequence.
>002378
MEEKEREAEAEFPAFPYKPYSIQTDFMKALYCSLENGGVSMLESPTGTGKTLSIICSALQ
WVVDQKQKQKQKQKYETMIKSDHSFTNNGDCSSNDEPDWMRNFVVNRDFQAEDAKIKKKK
NGCGLGKTGERKHREISTDTFSHSMEKDKCFTKKECENLQSINDQSELSDEEFLLEEYES
EEEGAIGGGKSKRKAGAGTISSSSDEEEEDGLDEEGEEVLKVYFCSRTHSQLSQFIKELR
KTVFANEIKVVCLGSRKNFCINEEVLRLGNSTHINERCLELQNKKKNEICKIKNLGAEGK
VRRTKAFSGCPVLRSHKLQKGFRNEISQQGALDIEDLVHLGRHMRTCPYYGSRSMVPTAD
LVVLPYQSLLSKSARESLGLNLKNNIVIIDEAHNLADSLINMYNAKITLSQLENVHSHLE
KYFGRFCSLLGPGNRRYIQTLMVFTRAFLQVLLKEKDENDVRQDSENSTGAKHAFDSSVA
INEFLFSLNIDNINLVKLLKYIKESNIIHKVSGYGDKAASLQKGSVLKDGGENYEEGSIL
SGFQSLVDMLISLTNNDGDGRIIISKARPISSGQQGQQGGYLKYVMLTGEKVFSEIVEQA
HAVILAGGTLQPIEETRERLFPWLSPNKFHFFSCSHIVPPESILPVALSCGPTGKSFDFS
YGSRSSSAMIEELGLLLCNLVSVVPEGIIVFFPSFEYVERVYGAWKSLGILDRIMKKKHV
FREPRGNTHVESVLKEYQKTIDTLSSRPKEDSTPLNGAMLLAVVGGKISEGINFSDGMGR
CIVMVGLPYPSPSNIELLERIKHIEGLGDTNSKTLNTSASDAYYNGDAQAGFGILRSCRG
RGKEYYENLCMKAVNQSIGRAIRHINDHAAILLVDLRYASESSKRSCSHPANKLPRWIKD
RLVSSTNNYGEVHRLLHQFFKFNKNRGCQ
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 002378
(929 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2017894 - symbol:AT1G79890 species:3702 "Arabi... 2104 9.6e-242 2
UNIPROTKB|E2RGR5 - symbol:DDX11 "Uncharacterized protein"... 1053 3.5e-135 3
MGI|MGI:2443590 - symbol:Ddx11 "DEAD/H (Asp-Glu-Ala-Asp/H... 1054 5.0e-134 3
UNIPROTKB|Q92771 - symbol:DDX12P "Putative ATP-dependent ... 1022 3.1e-128 3
ZFIN|ZDB-GENE-041114-191 - symbol:ddx11 "DEAD/H (Asp-Glu-... 960 6.5e-126 3
UNIPROTKB|A8MPP1 - symbol:DDX11L8 "Putative ATP-dependent... 897 1.5e-116 3
UNIPROTKB|F1SK84 - symbol:DDX11 "Uncharacterized protein"... 1001 4.2e-115 2
UNIPROTKB|E1BL06 - symbol:E1BL06 "Uncharacterized protein... 1005 5.4e-115 2
RGD|1306675 - symbol:Ddx11 "DEAD/H (Asp-Glu-Ala-Asp/His) ... 826 2.4e-110 3
UNIPROTKB|Q96FC9 - symbol:DDX11 "Probable ATP-dependent R... 946 2.4e-108 2
POMBASE|SPAC3G6.11 - symbol:chl1 "ATP-dependent DNA helic... 565 3.8e-97 4
FB|FBgn0026876 - symbol:CG11403 species:7227 "Drosophila ... 433 1.8e-95 4
UNIPROTKB|F1NN99 - symbol:DDX11 "Uncharacterized protein"... 597 3.0e-79 3
SGD|S000005929 - symbol:CHL1 "Probable DNA helicase" spec... 368 1.2e-78 4
WB|WBGene00010839 - symbol:chl-1 species:6239 "Caenorhabd... 500 9.0e-66 3
ASPGD|ASPL0000038959 - symbol:AN10414 species:162425 "Eme... 377 6.2e-63 4
CGD|CAL0004313 - symbol:orf19.2000 species:5476 "Candida ... 419 5.0e-61 3
UNIPROTKB|B4GU19 - symbol:GL14463 "Regulator of telomere ... 261 5.4e-59 5
UNIPROTKB|Q29FS3 - symbol:GA17940 "Regulator of telomere ... 261 5.4e-59 5
FB|FBgn0029798 - symbol:CG4078 species:7227 "Drosophila m... 256 4.3e-58 5
UNIPROTKB|B3NSW1 - symbol:GG18780 "Regulator of telomere ... 254 7.3e-58 5
UNIPROTKB|B4PZB4 - symbol:GE16425 "Regulator of telomere ... 255 1.1e-57 5
UNIPROTKB|B3MSG8 - symbol:GF20802 "Regulator of telomere ... 255 1.2e-57 5
UNIPROTKB|B4L1Z2 - symbol:GI15901 "Regulator of telomere ... 255 2.9e-57 5
UNIPROTKB|B4M891 - symbol:GJ16649 "Regulator of telomere ... 248 6.5e-57 5
UNIPROTKB|B4JNS2 - symbol:GH24089 "Regulator of telomere ... 247 1.5e-56 5
UNIPROTKB|B4NDG5 - symbol:GK24923 "Regulator of telomere ... 262 1.8e-56 5
UNIPROTKB|Q16X92 - symbol:AAEL008960 "Regulator of telome... 233 3.3e-52 5
UNIPROTKB|J3QSE8 - symbol:BRIP1 "Fanconi anemia group J p... 244 5.9e-52 5
UNIPROTKB|B0W9F4 - symbol:CPIJ003765 "Regulator of telome... 350 1.6e-51 4
UNIPROTKB|Q9BX63 - symbol:BRIP1 "Fanconi anemia group J p... 244 2.9e-51 5
UNIPROTKB|D4ACW5 - symbol:Brip1 "Protein Brip1" species:1... 241 6.4e-51 5
UNIPROTKB|Q7QEI1 - symbol:AGAP000634 "Regulator of telome... 221 6.5e-51 5
ZFIN|ZDB-GENE-050306-11 - symbol:rtel1 "regulator of telo... 235 7.6e-51 5
MGI|MGI:2442836 - symbol:Brip1 "BRCA1 interacting protein... 245 7.6e-51 5
UNIPROTKB|E1C1X9 - symbol:BRIP1 "Fanconi anemia group J p... 219 3.1e-50 5
UNIPROTKB|Q3YK19 - symbol:BRIP1 "Fanconi anemia group J p... 219 3.2e-50 5
ZFIN|ZDB-GENE-081107-11 - symbol:brip1 "BRCA1 interacting... 254 1.7e-49 5
UNIPROTKB|E1BTS7 - symbol:Gga.49055 "Uncharacterized prot... 230 1.1e-48 5
MGI|MGI:2139369 - symbol:Rtel1 "regulator of telomere elo... 226 1.2e-48 5
DICTYBASE|DDB_G0286621 - symbol:fncJ "DEAD/DEAH box helic... 262 1.3e-48 5
UNIPROTKB|E1BTS6 - symbol:Gga.49055 "Uncharacterized prot... 230 1.4e-48 5
UNIPROTKB|F1NE49 - symbol:Gga.49055 "Uncharacterized prot... 230 1.5e-48 5
UNIPROTKB|D4ACH4 - symbol:Rtel1 "Regulator of telomere el... 232 1.7e-48 5
RGD|1306721 - symbol:Rtel1 "regulator of telomere elongat... 232 3.1e-48 5
UNIPROTKB|J9NVZ8 - symbol:BRIP1 "Uncharacterized protein"... 224 3.4e-48 5
UNIPROTKB|E2RHN5 - symbol:BRIP1 "Uncharacterized protein"... 224 4.0e-48 5
UNIPROTKB|B4I0K4 - symbol:GM12432 "Regulator of telomere ... 255 4.7e-48 5
UNIPROTKB|E2RLA6 - symbol:RTEL1 "Uncharacterized protein"... 229 8.7e-48 5
UNIPROTKB|Q6H1L8 - symbol:Rtel1 "Regulator of telomere el... 229 3.1e-47 5
UNIPROTKB|Q9NZ71 - symbol:RTEL1 "Regulator of telomere el... 217 5.4e-47 5
UNIPROTKB|A4K436 - symbol:RTEL1 "Regulator of telomere el... 217 1.1e-46 5
UNIPROTKB|F6WH68 - symbol:RTEL1 "Protein RTEL1-TNFRSF6B" ... 217 1.3e-46 5
UNIPROTKB|E1BNG9 - symbol:BRIP1 "Uncharacterized protein"... 239 6.4e-46 4
UNIPROTKB|F1MMS0 - symbol:BRIP1 "Uncharacterized protein"... 239 8.8e-46 4
UNIPROTKB|Q5RE34 - symbol:RTEL1 "Regulator of telomere el... 322 4.9e-45 4
TAIR|locus:2016209 - symbol:AT1G79950 species:3702 "Arabi... 217 1.0e-44 6
TAIR|locus:2030497 - symbol:AT1G20720 species:3702 "Arabi... 285 1.4e-44 4
UNIPROTKB|D6RA96 - symbol:RTEL1-TNFRSF6B "Protein RTEL1-T... 217 1.5e-44 5
UNIPROTKB|A8WS58 - symbol:rtel-1 "Regulator of telomere e... 182 4.5e-44 6
WB|WBGene00009124 - symbol:rtel-1 species:6239 "Caenorhab... 180 3.8e-43 5
UNIPROTKB|Q93575 - symbol:rtel-1 "Regulator of telomere e... 180 3.8e-43 5
GENEDB_PFALCIPARUM|MAL13P1.134 - symbol:MAL13P1.134 "heli... 270 3.6e-40 4
UNIPROTKB|Q8IE72 - symbol:MAL13P1.134 "DEAD box helicase,... 270 3.6e-40 4
RGD|1307659 - symbol:Brip1 "BRCA1 interacting protein C-t... 241 9.3e-39 5
DICTYBASE|DDB_G0267414 - symbol:repD "transcription facto... 366 1.2e-38 3
WB|WBGene00001049 - symbol:dog-1 species:6239 "Caenorhabd... 219 1.8e-37 4
POMBASE|SPAC1D4.12 - symbol:rad15 "transcription factor T... 222 1.8e-35 5
UNIPROTKB|Q91941 - symbol:ERCC2/XPD "ERCC2/XPD protein" s... 229 3.3e-35 5
UNIPROTKB|G3N0I3 - symbol:BRIP1 "Uncharacterized protein"... 239 1.6e-34 4
ZFIN|ZDB-GENE-040426-997 - symbol:ercc2 "excision repair ... 340 1.8e-34 3
UNIPROTKB|F1N2P3 - symbol:ERCC2 "TFIIH basal transcriptio... 223 9.6e-34 4
UNIPROTKB|A6QLJ0 - symbol:ERCC2 "TFIIH basal transcriptio... 223 9.7e-34 4
FB|FBgn0261850 - symbol:Xpd "Xeroderma pigmentosum D" spe... 337 1.4e-33 3
MGI|MGI:95413 - symbol:Ercc2 "excision repair cross-compl... 222 2.0e-33 4
UNIPROTKB|P18074 - symbol:ERCC2 "TFIIH basal transcriptio... 222 2.0e-33 4
UNIPROTKB|Q60452 - symbol:ERCC2 "TFIIH basal transcriptio... 222 4.1e-33 4
RGD|1309109 - symbol:Ercc2 "excision repair cross-complem... 222 4.1e-33 4
TAIR|locus:2014525 - symbol:UVH6 "ULTRAVIOLET HYPERSENSIT... 216 8.2e-33 5
UNIPROTKB|A8MX75 - symbol:ERCC2 "TFIIH basal transcriptio... 222 1.1e-32 4
CGD|CAL0002854 - symbol:RAD3 species:5476 "Candida albica... 317 5.6e-30 3
UNIPROTKB|Q5AFE9 - symbol:RAD3 "Putative uncharacterized ... 317 5.6e-30 3
UNIPROTKB|F1PMH9 - symbol:ERCC2 "Uncharacterized protein"... 227 6.1e-30 3
SGD|S000000973 - symbol:RAD3 "5' to 3' DNA helicase" spec... 223 7.1e-30 4
ASPGD|ASPL0000055138 - symbol:AN9436 species:162425 "Emer... 312 1.3e-29 3
UNIPROTKB|J9NWT1 - symbol:ERCC2 "Uncharacterized protein"... 222 1.4e-29 3
UNIPROTKB|I3LBL1 - symbol:BRIP1 "Uncharacterized protein"... 190 4.2e-29 4
UNIPROTKB|E7EVE9 - symbol:ERCC2 "TFIIH basal transcriptio... 222 5.4e-29 5
UNIPROTKB|F1MWN6 - symbol:RTEL1 "Regulator of telomere el... 217 9.3e-29 4
WB|WBGene00021752 - symbol:Y50D7A.2 species:6239 "Caenorh... 250 1.5e-28 3
UNIPROTKB|C9K0E8 - symbol:DDX11 "Probable ATP-dependent R... 204 4.7e-25 2
UNIPROTKB|H0YFY8 - symbol:DDX11 "Probable ATP-dependent R... 177 4.8e-25 2
UNIPROTKB|F5H235 - symbol:DDX11 "Probable ATP-dependent R... 200 1.2e-24 2
UNIPROTKB|F6WZM0 - symbol:DDX11 "Probable ATP-dependent R... 200 8.9e-22 2
UNIPROTKB|B4DMS8 - symbol:DDX11 "Probable ATP-dependent R... 145 1.1e-15 2
UNIPROTKB|J3QKX0 - symbol:BRIP1 "Fanconi anemia group J p... 200 7.7e-15 1
UNIPROTKB|Q4JC68 - symbol:Saci_0192 "ATP-dependent DNA he... 113 1.8e-11 6
UNIPROTKB|K7EIT8 - symbol:ERCC2 "TFIIH basal transcriptio... 163 2.2e-11 2
UNIPROTKB|Q4KBT0 - symbol:PFL_3198 "DEAD 2 domain protein... 128 1.2e-10 5
UNIPROTKB|F5GXJ8 - symbol:DDX11 "Probable ATP-dependent R... 114 3.8e-09 2
WARNING: Descriptions of 9 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2017894 [details] [associations]
symbol:AT1G79890 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0006139
"nucleobase-containing compound metabolic process" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0006259 "DNA metabolic process" evidence=RCA] [GO:0006261
"DNA-dependent DNA replication" evidence=RCA] [GO:0006310 "DNA
recombination" evidence=RCA] [GO:0007059 "chromosome segregation"
evidence=RCA] [GO:0007126 "meiosis" evidence=RCA] [GO:0007129
"synapsis" evidence=RCA] [GO:0007131 "reciprocal meiotic
recombination" evidence=RCA] [GO:0010332 "response to gamma
radiation" evidence=RCA] [GO:0032204 "regulation of telomere
maintenance" evidence=RCA] [GO:0033044 "regulation of chromosome
organization" evidence=RCA] [GO:0042138 "meiotic DNA double-strand
break formation" evidence=RCA] [GO:0043247 "telomere maintenance in
response to DNA damage" evidence=RCA] InterPro:IPR002464
InterPro:IPR006555 InterPro:IPR010614 InterPro:IPR014013
InterPro:IPR027076 Pfam:PF06733 Pfam:PF13307 PROSITE:PS00690
PROSITE:PS51193 SMART:SM00491 INTERPRO:IPR013020 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0004003 InterPro:IPR014001 SMART:SM00487 EMBL:AC011717
UniGene:At.18069 eggNOG:COG1199 KO:K11273 PANTHER:PTHR11472:SF5
TIGRFAMs:TIGR00604 HOGENOM:HOG000241266 OMA:NLGRCVV IPI:IPI00530666
PIR:A96830 RefSeq:NP_178107.1 UniGene:At.66890
ProteinModelPortal:Q9CA92 SMR:Q9CA92 STRING:Q9CA92 PaxDb:Q9CA92
PRIDE:Q9CA92 EnsemblPlants:AT1G79890.1 GeneID:844328
KEGG:ath:AT1G79890 TAIR:At1g79890 InParanoid:Q9CA92
PhylomeDB:Q9CA92 ProtClustDB:CLSN2681868 Genevestigator:Q9CA92
Uniprot:Q9CA92
Length = 882
Score = 2104 (745.7 bits), Expect = 9.6e-242, Sum P(2) = 9.6e-242
Identities = 426/709 (60%), Positives = 535/709 (75%)
Query: 221 KVYFCSRTHSQLSQFIKELRKTVFANEIKVVCLGSRKNFCINEEVLRLGNSTHINERCLE 280
KV+FCSRTHSQLSQF+KELRKTVFA ++KVVCLGSRKN CINE+VL+LGN T INERCL+
Sbjct: 184 KVFFCSRTHSQLSQFVKELRKTVFAKKLKVVCLGSRKNLCINEDVLKLGNVTRINERCLD 243
Query: 281 LQXXXXXXXXXXXXLGAEGKVRRTKAFSGCPVLRSHKLQKGFRNEISQQGALDIEDLVHL 340
LQ LGA ++ RTKA CP+LR HKLQ+ F+ E QQ A+DIEDLV L
Sbjct: 244 LQKKKISQVSKKKNLGANVRIVRTKASCRCPMLRKHKLQREFKAESFQQEAMDIEDLVQL 303
Query: 341 GRHMRTCPYYGSRSMVPTADLVVLPYQSLLSKSARESLGLNLKNNIVIIDEAHNLADSLI 400
GR MRTCPYYGSR M P ADLV+LPYQSLLSKS+RESLGL+LKN++VIIDEAHNLAD+L+
Sbjct: 304 GREMRTCPYYGSRRMAPAADLVILPYQSLLSKSSRESLGLSLKNSVVIIDEAHNLADTLL 363
Query: 401 NMYNAKITLSQLENVHSHLEKYFGRFCSLLGPGNRRYIQTLMVFTRAFLQVLLKEKDEND 460
+M++AK+T+SQLE++H +E Y GRF +LLG GNRRYIQ +++ TRAFL+ L +++ +
Sbjct: 364 SMHDAKLTVSQLEDIHCSIESYLGRFQNLLGAGNRRYIQIMLILTRAFLKPLASDRNLSS 423
Query: 461 VRQDSENSTGAKHAFDSSVAINEFLFSLNIDNINLVKLLKYIKESNIIHKVSGYGDKAAS 520
V + +K + ++ + F ++ NI+ + L+K + + I K S K +
Sbjct: 424 VNVGLDTENPSKSKPCGACSMAIYDFLFSL-NIDNINLVKLL--AYI--KESNIIHKVSG 478
Query: 521 LQK--GSVLKDGGENYEEGSILSGFQSLVDMLISLTNNDGDGRIIISKARPISSXXXXXX 578
+ ++L+ +EE S L+ F++ DML++LTNN+GDGRIIIS+ SS
Sbjct: 479 YGERVAAMLQKDPVAHEEMSKLTSFRAFSDMLVALTNNNGDGRIIISRT---SSSTSGQH 535
Query: 579 XXYLKYVMLTGEKVFSEIVEQAHAVILAGGTLQPIEETRERLFPWLSPNKFHFFSCSHIV 638
Y+KYVMLTG K+FSE+V++AHAVILAGGTLQPIEETRERLFPWL N+ FFSCSHIV
Sbjct: 536 GGYIKYVMLTGAKLFSEVVDEAHAVILAGGTLQPIEETRERLFPWLPSNQLQFFSCSHIV 595
Query: 639 PPESILPVALSCGPTGKXXXXXXXXXXXXAMIEELGLLLCNLVSVVPEGIIVFFPSFEYV 698
PPESI+P+A+S GP+G+ MI+ELGLL+ NLV+VVPEGIIVFF SFEY
Sbjct: 596 PPESIMPIAVSHGPSGQSFDFSHSSRSSIGMIQELGLLMSNLVAVVPEGIIVFFSSFEYE 655
Query: 699 ERVYGAWKSLGILDRIMKKKHVFREPRGNTHVESVLKEYQKTIDTLSSRPKEDSTPLNGA 758
+V+ AW + GIL RI+KKK VFREPR NT VE+VL++Y++ I+ S R GA
Sbjct: 656 TQVHTAWSNSGILRRIVKKKRVFREPRKNTEVEAVLRDYKEAIE--SER---------GA 704
Query: 759 MLLAVVGGKISEGINFSDGMGRCIVMVGLPYPSPSNIELLERIKHIEGLGDTNS-KTLNT 817
++LAVVGGK+SEGINFSD M RC+VMVGLPYPSPS+IELLERIKHIEG D++S K T
Sbjct: 705 IMLAVVGGKVSEGINFSDSMCRCVVMVGLPYPSPSDIELLERIKHIEGRADSDSIKPSVT 764
Query: 818 SASDAYYNGDAQAGFGILRSCRGRGKEYYENLCMKAVNQSIGRAIRHINDHAAILLVDLR 877
D+YY+GD QAGFG+L+SC+ RGKEYYENLCMKAVNQSIGRAIRH D+A+ILLVD R
Sbjct: 765 LVDDSYYSGDVQAGFGVLKSCKRRGKEYYENLCMKAVNQSIGRAIRHEKDYASILLVDAR 824
Query: 878 YASESSKR-SCSHPANKLPRWIKDRLVSSTNNYGEVHRLLHQFFKFNKN 925
Y+++ SKR S SHP+NKLP+WIKDRL+ ST YG+VHRLLHQFFK +KN
Sbjct: 825 YSNDPSKRTSHSHPSNKLPKWIKDRLIYSTKGYGDVHRLLHQFFK-HKN 872
Score = 249 (92.7 bits), Expect = 9.6e-242, Sum P(2) = 9.6e-242
Identities = 65/141 (46%), Positives = 76/141 (53%)
Query: 20 YSIQTDFMKALYCSLENGGVSMLESPTGTGKTLSIICSALQWVVDXXXXXXXXXXYETMI 79
YSIQ DFM ALY L+ GGVSMLESPTGTGK+LSIICSALQW+ D E+
Sbjct: 15 YSIQIDFMNALYQFLDKGGVSMLESPTGTGKSLSIICSALQWLTDRKEKRNSGLTEES-- 72
Query: 80 KSDHSFTNNGDCSSNDEPDWMRNFVVNR-DFQAEDAKIKKKKNGCGLGKTGERKH-REIS 137
H N D DEPDWMRNF +N D D IK K+ L RKH +E+
Sbjct: 73 ---HKVDGNDD---EDEPDWMRNFTLNEADGANGDKSIKNTKSPFSL-----RKHAKEVF 121
Query: 138 TDTFSHSMEKDKCFTKKECEN 158
T+ D+ F E E+
Sbjct: 122 TEGEKADELNDQEFLLDEYES 142
>UNIPROTKB|E2RGR5 [details] [associations]
symbol:DDX11 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0030496 "midbody" evidence=IEA] [GO:0007062
"sister chromatid cohesion" evidence=IEA] [GO:0000922 "spindle
pole" evidence=IEA] [GO:0000790 "nuclear chromatin" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004003 "ATP-dependent
DNA helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR006554 InterPro:IPR006555
InterPro:IPR010614 InterPro:IPR014013 InterPro:IPR027076
Pfam:PF06733 Pfam:PF13307 PROSITE:PS51193 SMART:SM00488
SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0003677
GO:GO:0000790 GO:GO:0004003 GO:GO:0030496 GO:GO:0000922
PANTHER:PTHR11472:SF5 TIGRFAMs:TIGR00604 OMA:NLGRCVV
GeneTree:ENSGT00530000063199 GO:GO:0007062 EMBL:AAEX03015316
Ensembl:ENSCAFT00000024894 Uniprot:E2RGR5
Length = 908
Score = 1053 (375.7 bits), Expect = 3.5e-135, Sum P(3) = 3.5e-135
Identities = 254/685 (37%), Positives = 378/685 (55%)
Query: 219 VLKVYFCSRTHSQLSQFIKELRKTVFANEIKVVCLGSRKNFCINEEVLRLGNSTHINERC 278
V K+Y+CSRTHSQL+QF+ E++++ F + ++V LGSR+N C+NE+V LG+ IN+RC
Sbjct: 226 VTKIYYCSRTHSQLAQFVHEVQRSPFGKDTRLVSLGSRQNLCVNEDVKTLGSVQLINDRC 285
Query: 279 LELQXXXXXXXXXXXXLGAEGKVRRTKAFSGCPVLRSHKLQKGFRNEISQQGALDIEDLV 338
+E+Q + K RR + + CP +LQ R+++ G DIE LV
Sbjct: 286 MEMQRSKHGSHKNRAE-EEKPKRRRQEHQAACPFYNYEQLQL-LRDQVLV-GVKDIEQLV 342
Query: 339 HLGRHMRTCPYYGSRSMVPTADLVVLPYQSLLSKSARESLGLNLKNNIVIIDEAHNLADS 398
LG+ R CPYYGSR +P A LVVLPYQ LL + R++ G+ L+ +V+IDEAHNL D+
Sbjct: 343 ALGKEARACPYYGSRFAIPAAQLVVLPYQMLLHAATRQAAGIRLQGQVVVIDEAHNLIDT 402
Query: 399 LINMYNAKITLSQLENVHSHLEKYFGRFCSLLGPGNRRYIQTLMVFTRAFLQVLLKEKDE 458
+ +++ +++ SQL HS L +Y R+ L N YI+ ++ F+ VL +
Sbjct: 403 ITGIHSVEVSGSQLCQAHSQLLQYMERYGKRLKAKNLMYIKQILYLLEKFVTVLGGNVKQ 462
Query: 459 NDVRQDSENSTGAKHAFDSSVAINEFLFSLNIDNINLVKLLKYIKESNIIHKVSGYGDKA 518
N Q S + TG + IN+FLF IDNINL K+ Y ++S I K+ G+ ++
Sbjct: 463 NPNTQ-SLSQTGTELK-----TINDFLFQTQIDNINLFKVRHYCEKSMISRKLFGFTERY 516
Query: 519 ASLQKGSVLKDGGENYEEGSILSGFQSLVDMLIS--LTN-NDGDGRI------------- 562
G VL E + QSL + +T DG+ R+
Sbjct: 517 -----GIVLAPSREQPNLAGLQHFLQSLQPTVTKTPVTPVEDGEARVPRPASPLMHIESF 571
Query: 563 --IISKA----RPISSXXXXXXXXYLKYVMLTGEKVFSEIVEQAHAVILAGGTLQPIEET 616
++ A R I S LK+++L F+++V++ AV++AGGT+QP+ +
Sbjct: 572 LAALTTANQDGRVILSRQGSLSQSSLKFLLLNPAVHFAQVVKECRAVVIAGGTMQPVSDF 631
Query: 617 RERLFPW--LSPNKFHFFSCSHIVPPESILPVALSCGPTGKXXXXXXXXXXXXAMIEELG 674
RE+L + + FSC H++PP++ILP+ + GP+ + M++E G
Sbjct: 632 REQLLACAGVEAERVVEFSCGHVIPPDNILPLIICSGPSSQQLEFTYQKRELPQMMDETG 691
Query: 675 LLLCNLVSVVPEGIIVFFPSFEYVERVYGAWKSLGILDRIMKKKHVFREPRGNTHVESVL 734
+LCNL +VVP G++ FFPS+EY +VY W G+L R+ +K +F+EP+ VE VL
Sbjct: 692 RILCNLCTVVPGGVVCFFPSYEYQRQVYAHWDKSGLLARLAVRKKIFQEPKRANQVEQVL 751
Query: 735 KEYQKTIDTLSSRPKEDSTPLNGAMLLAVVGGKISEGINFSDGMGRCIVMVGLPYPSPSN 794
EY + I + + GA+LL+VVGGK+SEGINFSD +GRC+VMVG+PYP+ +
Sbjct: 752 MEYSRCIKCCG----QAGGTVTGALLLSVVGGKMSEGINFSDDLGRCVVMVGMPYPNIKS 807
Query: 795 IELLERIKHIEGLGDTNSKTLNTSASDAYYNGDAQAGFGILRSCRGRGKEYYENLCMKAV 854
EL E++ +++ +TL G G K ENLCMKAV
Sbjct: 808 PELQEKMAYLD-------QTLPRVP------GQPPPG-----------KALVENLCMKAV 843
Query: 855 NQSIGRAIRHINDHAAILLVDLRYA 879
NQSIGRAIRH D A+I+L+D RYA
Sbjct: 844 NQSIGRAIRHQKDFASIVLLDQRYA 868
Score = 159 (61.0 bits), Expect = 3.5e-135, Sum P(3) = 3.5e-135
Identities = 39/81 (48%), Positives = 49/81 (60%)
Query: 842 GKEYYENLCMKAVNQSIGRAIRHINDHAAILLVDLRYASESSKRSCSHPANKLPRWIKDR 901
GK ENLCMKAVNQSIGRAIRH D A+I+L+D RYA KLP WI+DR
Sbjct: 831 GKALVENLCMKAVNQSIGRAIRHQKDFASIVLLDQRYARPPI-------LEKLPAWIRDR 883
Query: 902 L-VSSTNNYGEVHRLLHQFFK 921
+ V +T +G + +F +
Sbjct: 884 VEVRAT--FGPAFATMRKFHR 902
Score = 148 (57.2 bits), Expect = 3.5e-135, Sum P(3) = 3.5e-135
Identities = 43/122 (35%), Positives = 61/122 (50%)
Query: 20 YSIQTDFMKALYCSLENGGVSMLESPTGTGKTLSIICSALQWVVDXXXXXXXXXXYETMI 79
YSIQ DFM LY LE G + + ESPTGTGK+LS+IC AL W+ D ++
Sbjct: 20 YSIQKDFMAELYRVLEAGKIGIFESPTGTGKSLSVICGALSWLRDFEQKKHQEEA--RLL 77
Query: 80 KSDHSFTNNG---------DC-------SSNDEPDWMRNFVVN---RDF--QAEDAKIKK 118
K+ + N+G C S EPDW+ FV RD + ++ ++++
Sbjct: 78 KAGTTPLNDGKEQPPPLSASCKRTPDTLSPAGEPDWVTQFVQKKEERDLVDRLKEEQVRR 137
Query: 119 KK 120
KK
Sbjct: 138 KK 139
>MGI|MGI:2443590 [details] [associations]
symbol:Ddx11 "DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000790 "nuclear chromatin" evidence=ISO]
[GO:0000922 "spindle pole" evidence=ISO] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004003 "ATP-dependent
DNA helicase activity" evidence=IEA] [GO:0004386 "helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006139
"nucleobase-containing compound metabolic process" evidence=IEA]
[GO:0007049 "cell cycle" evidence=IEA] [GO:0007062 "sister
chromatid cohesion" evidence=ISO] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=ISO] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0016817 "hydrolase activity, acting on acid
anhydrides" evidence=IEA] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0030496 "midbody" evidence=ISO] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0051536 "iron-sulfur cluster
binding" evidence=IEA] [GO:0051539 "4 iron, 4 sulfur cluster
binding" evidence=IEA] InterPro:IPR006554 InterPro:IPR006555
InterPro:IPR010614 InterPro:IPR014013 InterPro:IPR027076
Pfam:PF06733 Pfam:PF13307 PROSITE:PS00690 PROSITE:PS51193
SMART:SM00488 SMART:SM00491 MGI:MGI:2443590 INTERPRO:IPR013020
GO:GO:0005524 GO:GO:0005730 GO:GO:0046872 GO:GO:0003677
GO:GO:0051539 GO:GO:0003723 GO:GO:0000790 GO:GO:0004003
GO:GO:0004386 GO:GO:0030496 GO:GO:0000922 GO:GO:0008094
eggNOG:COG1199 KO:K11273 PANTHER:PTHR11472:SF5 TIGRFAMs:TIGR00604
HOGENOM:HOG000241266 OMA:NLGRCVV GeneTree:ENSGT00530000063199
GO:GO:0007062 HOVERGEN:HBG058884 OrthoDB:EOG4B5P4M CTD:1663
EMBL:BC079656 IPI:IPI00460651 RefSeq:NP_001003919.1
UniGene:Mm.259605 ProteinModelPortal:Q6AXC6 SMR:Q6AXC6
STRING:Q6AXC6 PhosphoSite:Q6AXC6 PRIDE:Q6AXC6
Ensembl:ENSMUST00000163605 GeneID:320209 KEGG:mmu:320209
UCSC:uc008dha.1 InParanoid:Q6AXC6 NextBio:396263 Bgee:Q6AXC6
Genevestigator:Q6AXC6 GermOnline:ENSMUSG00000035842 Uniprot:Q6AXC6
Length = 880
Score = 1054 (376.1 bits), Expect = 5.0e-134, Sum P(3) = 5.0e-134
Identities = 253/689 (36%), Positives = 385/689 (55%)
Query: 219 VLKVYFCSRTHSQLSQFIKELRKTVFANEIKVVCLGSRKNFCINEEVLRLGNSTHINERC 278
+ K+Y+CSRTHSQL+QF++E+ K+ F E ++V LGSR+ C+NE+V LG+ +N+RC
Sbjct: 198 ITKIYYCSRTHSQLAQFVREVLKSPFGKETRLVSLGSRQTLCVNEDVKNLGSVQLMNDRC 257
Query: 279 LELQXXXXXXXXXXXXLGAEGKVRRTKAFSGCPVLRSHKLQKGFRNEISQQGALDIEDLV 338
+++Q + K +R K + CP +H+ + R+EI + D+E LV
Sbjct: 258 VDMQRSKREKNGTGED---KPKRKRQKIQTSCPFY-NHEQMELLRDEILLE-VKDMEQLV 312
Query: 339 HLGRHMRTCPYYGSRSMVPTADLVVLPYQSLLSKSARESLGLNLKNNIVIIDEAHNLADS 398
LG+ R CPYYGSR +P A LVVLPY LL + R++ G+ L+ +VIIDEAHNL D+
Sbjct: 313 ALGKEARACPYYGSRFAIPAAQLVVLPYPMLLHAATRQAAGIRLQGQVVIIDEAHNLIDT 372
Query: 399 LINMYNAKITLSQLENVHSHLEKYFGRFCSLLGPGNRRYIQTLMVFTRAFLQVLLKEKDE 458
+ N+++ ++ SQL HS L +Y R+ L N YI+ ++ F+ VL +
Sbjct: 373 ITNIHSTEVNGSQLCQAHSQLLQYMERYRKRLKAKNLMYIKQILYLLEKFVAVLGGNVKQ 432
Query: 459 NDVRQDSENSTGAKHAFDSSVAINEFLFSLNIDNINLVKLLKYIKESNIIHKVSGYGDKA 518
N Q S + TG++ +IN+FLF +DNINL K+ +Y+++S + K+ G+ +
Sbjct: 433 NPTTQ-SLSQTGSELK-----SINDFLFQSQVDNINLFKVQRYLEKSMLSRKLFGFTECF 486
Query: 519 ASLQKGSVLKDGGENYEEGSILSGFQSLVDMLISLTNNDG--DGRII-ISKARP------ 569
+ L D EN G L+GFQ + L S D +G+ + + A P
Sbjct: 487 GVVLPS--LSDSQEN--RG--LAGFQQFLKSLQSGPTEDSPEEGQAVALRPASPLMHIEA 540
Query: 570 --------------ISSXXXXXXXXYLKYVMLTGEKVFSEIVEQAHAVILAGGTLQPIEE 615
I + LK+++L F+++V++ AV++AGGT+QP+ +
Sbjct: 541 FLAALTTANQDGRVIVNRQGSVGQSSLKFLLLNPAVHFAQVVKECRAVVIAGGTMQPMSD 600
Query: 616 TRERLFPW--LSPNKFHFFSCSHIVPPESILPVALSCGPTGKXXXXXXXXXXXXAMIEEL 673
RE+L + + FSC H++PP++ILP+ + GP+ + M+EE
Sbjct: 601 FREQLLACSGVEAGRVVEFSCGHVIPPDNILPLIICSGPSNQQLEFTYQRRELPQMVEET 660
Query: 674 GLLLCNLVSVVPEGIIVFFPSFEYVERVYGAWKSLGILDRIMKKKHVFREPRGNTHVESV 733
G +LCNL +VVP G++ F PS+EY+ +V+ W G+L R+ +K +F+EP+ + VE V
Sbjct: 661 GRILCNLCNVVPGGVVCFLPSYEYLRQVHAHWDKTGLLTRLSVRKKIFQEPKRASQVEQV 720
Query: 734 LKEYQKTIDTLSSRPKEDSTPLNGAMLLAVVGGKISEGINFSDGMGRCIVMVGLPYPSPS 793
L Y K I +S E L GA+LL+VVGGK+SEGINFSD +GRC+VMVG+PYP+
Sbjct: 721 LMAYSKCI--MSCSHSEGH--LTGALLLSVVGGKMSEGINFSDDLGRCVVMVGMPYPNIK 776
Query: 794 NIELLERIKHIEGLGDTNSKTLNTSASDAYYNGDAQAGFGILRSCRGRGKEYYENLCMKA 853
+ EL E++ + L T +T G G ++ ENLCMKA
Sbjct: 777 SPELQEKMAY---LNQTLPRT----------QGQPLPGTVLI-----------ENLCMKA 812
Query: 854 VNQSIGRAIRHINDHAAILLVDLRYASES 882
+NQSIGRAIRH D A+I+L+D RYA S
Sbjct: 813 INQSIGRAIRHQRDFASIVLLDHRYARPS 841
Score = 153 (58.9 bits), Expect = 5.0e-134, Sum P(3) = 5.0e-134
Identities = 38/81 (46%), Positives = 49/81 (60%)
Query: 842 GKEYYENLCMKAVNQSIGRAIRHINDHAAILLVDLRYASESSKRSCSHPANKLPRWIKDR 901
G ENLCMKA+NQSIGRAIRH D A+I+L+D RYA S KLP WI+DR
Sbjct: 801 GTVLIENLCMKAINQSIGRAIRHQRDFASIVLLDHRYARPSILA-------KLPAWIRDR 853
Query: 902 L-VSSTNNYGEVHRLLHQFFK 921
+ V +T +G + +F +
Sbjct: 854 VEVKAT--FGPAFAAVRKFHR 872
Score = 142 (55.0 bits), Expect = 5.0e-134, Sum P(3) = 5.0e-134
Identities = 27/45 (60%), Positives = 32/45 (71%)
Query: 20 YSIQTDFMKALYCSLENGGVSMLESPTGTGKTLSIICSALQWVVD 64
Y IQ DFM LY LE G + + ESPTGTGK+LS+IC AL W+ D
Sbjct: 20 YPIQKDFMAELYKVLEGGKIGIFESPTGTGKSLSLICGALSWLRD 64
Score = 49 (22.3 bits), Expect = 8.9e-17, Sum P(3) = 8.9e-17
Identities = 17/55 (30%), Positives = 31/55 (56%)
Query: 117 KKKKNGCGLGKTGERKHREISTDT--FSHS-ME--KDKCFTK-KECENLQSINDQ 165
K++KNG G K +RK ++I T ++H ME +D+ + K+ E L ++ +
Sbjct: 264 KREKNGTGEDKP-KRKRQKIQTSCPFYNHEQMELLRDEILLEVKDMEQLVALGKE 317
>UNIPROTKB|Q92771 [details] [associations]
symbol:DDX12P "Putative ATP-dependent RNA helicase DDX12"
species:9606 "Homo sapiens" [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0007049 "cell cycle" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR006554 InterPro:IPR006555
InterPro:IPR010614 InterPro:IPR014013 InterPro:IPR027076
Pfam:PF06733 Pfam:PF13307 PROSITE:PS00690 PROSITE:PS51193
SMART:SM00488 SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0003723 GO:GO:0007049
GO:GO:0004003 PANTHER:PTHR11472:SF5 TIGRFAMs:TIGR00604
HOGENOM:HOG000241266 HOVERGEN:HBG058884 EMBL:AC092821 EMBL:AC141557
EMBL:U33834 IPI:IPI00023299 UniGene:Hs.447869 UniGene:Hs.504688
ProteinModelPortal:Q92771 SMR:Q92771 STRING:Q92771
PhosphoSite:Q92771 DMDM:182705254 PRIDE:Q92771
GeneCards:GC12M009720 HGNC:HGNC:2737 MIM:601151 neXtProt:NX_Q92771
InParanoid:Q92771 ArrayExpress:Q92771 CleanEx:HS_DDX12
Genevestigator:Q92771 Uniprot:Q92771
Length = 950
Score = 1022 (364.8 bits), Expect = 3.1e-128, Sum P(3) = 3.1e-128
Identities = 240/679 (35%), Positives = 380/679 (55%)
Query: 219 VLKVYFCSRTHSQLSQFIKELRKTVFANEIKVVCLGSRKNFCINEEVLRLGNSTHINERC 278
+ K+Y CSRTHSQL+QF+ E++K+ F ++++V LGSR+N C+NE+V LG+ IN RC
Sbjct: 245 ITKIYHCSRTHSQLAQFVHEVKKSPFGKDVRLVSLGSRQNLCVNEDVRSLGSVQLINNRC 304
Query: 279 LELQXXXXXXXXXXXXLGAEGKVRRTKAFSGCPVLRSHKLQKGFRNEISQQGALDIEDLV 338
+++Q + K RR + + CP +H+ Q G + + D+E L+
Sbjct: 305 VDMQRSRHEKKKGAEE--EKPKRRRQEKQAACPFY-NHE-QMGLLRDEALAEVKDMEQLL 360
Query: 339 HLGRHMRTCPYYGSRSMVPTADLVVLPYQSLLSKSARESLGLNLKNNIVIIDEAHNLADS 398
LG+ R CPYYGSR +P A LVVLPYQ LL + R++ G+ L++ +VIIDEAHNL D+
Sbjct: 361 ALGKEARACPYYGSRLAIPAAQLVVLPYQMLLHAATRQAAGIRLQDQVVIIDEAHNLIDT 420
Query: 399 LINMYNAKITLSQLENVHSHLEKYFGRFCSLLGPGNRRYIQTLMVFTRAFLQVLLKEKDE 458
+M++ +++ SQL HS L +Y R+ L N Y++ ++ F+ VL +
Sbjct: 421 TTSMHSVEVSGSQLCQAHSQLLQYMERYGKRLKAKNLMYLKQILYLLEKFVAVLGGNIKQ 480
Query: 459 NDVRQDSENSTGAKHAFDSSVAINEFLFSLNIDNINLVKLLKYIKESNIIHKVSGYGDKA 518
N Q S + TG + IN+FLF IDNINL K+ +Y ++S I K+ G+ ++
Sbjct: 481 NPNTQ-SLSQTGMELK-----TINDFLFQSQIDNINLFKVQRYCEKSMISRKLFGFTERY 534
Query: 519 ASL--QKGSVLKDGGENYEEG------SILSG----FQSLVDMLIS-LTNNDGDGRIIIS 565
++ + G + + + L+ Q+ V S L + +G + +
Sbjct: 535 GAVFSSREQPKLAGFQQFLQSLQPRTTEALAAPADESQASVPQPASPLMHIEGFLAALTT 594
Query: 566 K---ARPISSXXXXXXXXYLKYVMLTGEKVFSEIVEQAHAVILAGGTLQPIEETRERLFP 622
R I S LK+++L F+++V++ AV++AGGT+QP+ R++L
Sbjct: 595 ANQDGRVILSRQGSLSQSTLKFLLLNPAVHFAQVVKECRAVVIAGGTMQPVSNFRQQLLA 654
Query: 623 W--LSPNKFHFFSCSHIVPPESILPVALSCGPTGKXXXXXXXXXXXXAMIEELGLLLCNL 680
+ + FSC H++PP++ILP+ + G + + M++E+G +LCNL
Sbjct: 655 CAGVEAERVVEFSCGHVIPPDNILPLVICSGVSNQPLEFTFQKRDLPQMMDEVGRILCNL 714
Query: 681 VSVVPEGIIVFFPSFEYVERVYGAWKSLGILDRIMKKKHVFREPRGNTHVESVLKEYQKT 740
VV G++ FFPS+EY+ +V+ W+ G+L R+ +K +F+EP+ VE VL Y +
Sbjct: 715 CGVVSGGVVCFFPSYEYLRQVHAHWEKGGLLGRLAARKKIFQEPKSAHQVEQVLLAYSRC 774
Query: 741 IDTLSSRPKEDSTPLNGAMLLAVVGGKISEGINFSDGMGRCIVMVGLPYPSPSNIELLER 800
+ ++ P+ GA+LL+VVGGK+SEGINFSD +GRC+VMVG+P+P+ + EL E+
Sbjct: 775 LQACG----QERGPVTGALLLSVVGGKMSEGINFSDNLGRCVVMVGMPFPNIRSAELQEK 830
Query: 801 IKHIEGLGDTNSKTLNTSASDAYYNGDAQAGFGILRSCRGRGKEYYENLCMKAVNQSIGR 860
+ +++ +TL + A+ GK ENLCMKAVNQSIGR
Sbjct: 831 MAYLD-------QTLPRAPGQAH-----------------PGKALVENLCMKAVNQSIGR 866
Query: 861 AIRHINDHAAILLVDLRYA 879
AIRH D A+I+L+D RYA
Sbjct: 867 AIRHQKDFASIVLLDQRYA 885
Score = 146 (56.5 bits), Expect = 3.1e-128, Sum P(3) = 3.1e-128
Identities = 36/66 (54%), Positives = 42/66 (63%)
Query: 842 GKEYYENLCMKAVNQSIGRAIRHINDHAAILLVDLRYASESSKRSCSHPANKLPRWIKDR 901
GK ENLCMKAVNQSIGRAIRH D A+I+L+D RYA KLP WI+ R
Sbjct: 848 GKALVENLCMKAVNQSIGRAIRHQKDFASIVLLDQRYARPPVLA-------KLPAWIRAR 900
Query: 902 L-VSST 906
+ V +T
Sbjct: 901 VEVKAT 906
Score = 126 (49.4 bits), Expect = 3.1e-128, Sum P(3) = 3.1e-128
Identities = 24/40 (60%), Positives = 29/40 (72%)
Query: 25 DFMKALYCSLENGGVSMLESPTGTGKTLSIICSALQWVVD 64
DFM LY LE G + + ESPTGTGK+LS+IC AL W+ D
Sbjct: 44 DFMAELYRVLEAGKIGIFESPTGTGKSLSLICGALSWLRD 83
>ZFIN|ZDB-GENE-041114-191 [details] [associations]
symbol:ddx11 "DEAD/H (Asp-Glu-Ala-Asp/His) box
helicase 11" species:7955 "Danio rerio" [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0032508 "DNA duplex
unwinding" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0006139 "nucleobase-containing compound
metabolic process" evidence=IEA] [GO:0016817 "hydrolase activity,
acting on acid anhydrides" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR006555 InterPro:IPR010614
InterPro:IPR014013 InterPro:IPR027076 Pfam:PF06733 Pfam:PF13307
PROSITE:PS51193 SMART:SM00491 INTERPRO:IPR013020
ZFIN:ZDB-GENE-041114-191 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0004003 InterPro:IPR014001 SMART:SM00487 eggNOG:COG1199
KO:K11273 PANTHER:PTHR11472:SF5 TIGRFAMs:TIGR00604
HOGENOM:HOG000241266 HOVERGEN:HBG058884 OrthoDB:EOG4B5P4M CTD:1663
EMBL:BC085645 IPI:IPI00501779 RefSeq:NP_001007320.1
UniGene:Dr.37620 ProteinModelPortal:Q5U399 STRING:Q5U399
GeneID:492353 KEGG:dre:492353 InParanoid:Q5U399 NextBio:20864919
ArrayExpress:Q5U399 Uniprot:Q5U399
Length = 890
Score = 960 (343.0 bits), Expect = 6.5e-126, Sum P(3) = 6.5e-126
Identities = 228/610 (37%), Positives = 347/610 (56%)
Query: 219 VLKVYFCSRTHSQLSQFIKELRKTVFANEIKVVCLGSRKNFCINEEVLRLGNSTHINERC 278
V K+Y+CSRTHSQL+QF+ E++K+ + + +++V LGSR+N CIN EV+RLGN +NERC
Sbjct: 205 VTKIYYCSRTHSQLAQFVHEVQKSPYGDAVRLVNLGSRQNLCINPEVVRLGNVQMMNERC 264
Query: 279 LELQXXXXXXXXXXXXLGAEGKVRRTKAFSGCPVLRSHKLQKGFRNEISQQGALDIEDLV 338
LE+Q +E K R A + C R L ++E+ + D+E L+
Sbjct: 265 LEMQKNKHEKRQKASD--SESKRSRGLAKATCVFSRFENLM-AMKDEVLVK-VRDVEQLI 320
Query: 339 HLGRHMRTCPYYGSRSMVPTADLVVLPYQSLLSKSARESLGLNLKNNIVIIDEAHNLADS 398
GR TCPYY +R +P A +VVLPYQSLL S R++ G+ LK+ IVIIDEAHNL D+
Sbjct: 321 QHGRETHTCPYYSTRMSIPAAQVVVLPYQSLLHASTRKASGIKLKDQIVIIDEAHNLMDT 380
Query: 399 LINMYNAKITLSQLENVHSHLEKYFGRFCSLLGPGNRRYIQTLMVFTRAFLQVLLKEKDE 458
+ +++A+I+ QL HS L +Y R+ S L N YI+ ++ ++ L + +
Sbjct: 381 ISAIHSAEISGGQLCRAHSQLSQYCERYRSRLKAKNLMYIKQILFVLEGLVRTLGGKVGQ 440
Query: 459 NDVRQD----SENSTGAKHAFDSSVA-INEF----LFSLNIDNINLVKLLKYIKESNI-I 508
N Q SE T F + V IN F F ++ + L + + S I
Sbjct: 441 NPNTQSCQTGSELLTINDFLFKAQVDNINLFKVQKYFEKSMISRKLCGFAEKYEGSGINT 500
Query: 509 HKVS---------GYGDKAASLQ-KGSVLKDGGENYEEGSILSGFQSLVD-MLISLTNND 557
H S G +LQ K + + + E+ I++ L + L +LTN +
Sbjct: 501 HSSSKNKENRRTEGLWRFLQTLQSKPTDVSEQQMAVEDKPIMASPMMLAESFLFALTNAN 560
Query: 558 GDGRIIISKARPISSXXXXXXXXYLKYVMLTGEKVFSEIVEQAHAVILAGGTLQPIEETR 617
DGRI+I + ++ LK+++L F++I+++ AVI+AGGT+QP+ + +
Sbjct: 561 KDGRIVIQRQACVAQSS-------LKFLLLNAAVHFAQILQECRAVIIAGGTMQPVADFK 613
Query: 618 ERLF--PWLSPNKFHFFSCSHIVPPESILPVALSCGPTGKXXXXXXXXXXXXAMIEELGL 675
E+L ++ + FSC H++PPE+ILP+ L GP+G+ M+EE G
Sbjct: 614 EQLLFSAGVTEERILEFSCGHVIPPENILPIVLCAGPSGQQLEFTFQTRDSPQMMEETGR 673
Query: 676 LLCNLVSVVPEGIIVFFPSFEYVERVYGAWKSLGILDRIMKKKHVFREPRGNTHVESVLK 735
+L NL ++VP G++ FFPS+EY +R+ G W+S GIL R+ KK +F+EP+ + VE VL
Sbjct: 674 VLSNLCNIVPGGVVCFFPSYEYEKRILGHWESTGILQRLQSKKKIFQEPKKASQVEQVLS 733
Query: 736 EYQKTIDTLSSRPKEDSTPLNGAMLLAVVGGKISEGINFSDGMGRCIVMVGLPYPSPSNI 795
EY K I S+ + GA+L +VVGGK+SEGINFSD +GRCIVMVG+PYP+ +
Sbjct: 734 EYSKCIQRCSNIGGGQT----GALLFSVVGGKMSEGINFSDDLGRCIVMVGMPYPNIKSP 789
Query: 796 ELLERIKHIE 805
EL E++ +++
Sbjct: 790 ELQEKMAYLD 799
Score = 168 (64.2 bits), Expect = 6.5e-126, Sum P(3) = 6.5e-126
Identities = 43/108 (39%), Positives = 57/108 (52%)
Query: 20 YSIQTDFMKALYCSLENGGVSMLESPTGTGKTLSIICSALQWVVDXXXXXXXXXX--YET 77
Y IQ FM+ALY +L+ V + ESPTGTGK+LS+IC AL W+ D E
Sbjct: 15 YPIQESFMEALYTALDQRKVGIFESPTGTGKSLSLICGALTWLRDYEEQRKQEAARLLEG 74
Query: 78 MIKSDHSFTNNGDCSSNDEPDWMRNFV---VNRDF--QAEDAKIKKKK 120
SD N + S EPDW+ FV RD + +D ++K+KK
Sbjct: 75 QKDSDVVKEKNSN-SGPPEPDWVSEFVQKKAERDMVNKLKDEELKRKK 121
Score = 144 (55.7 bits), Expect = 6.5e-126, Sum P(3) = 6.5e-126
Identities = 35/79 (44%), Positives = 44/79 (55%)
Query: 842 GKEYYENLCMKAVNQSIGRAIRHINDHAAILLVDLRYASESSKRSCSHPANKLPRWIKDR 901
GK E+LCMKAVNQSIGRAIRH D+A I+L D RYA + + KLP WI+
Sbjct: 811 GKALVESLCMKAVNQSIGRAIRHRGDYACIVLCDHRYARTGTLQ-------KLPEWIRSS 863
Query: 902 LVSSTNNYGEVHRLLHQFF 920
+ +G +FF
Sbjct: 864 THTHAT-FGPAFASARRFF 881
>UNIPROTKB|A8MPP1 [details] [associations]
symbol:DDX11L8 "Putative ATP-dependent RNA helicase
DDX11-like protein 8" species:9606 "Homo sapiens" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR006554 InterPro:IPR006555
InterPro:IPR010614 InterPro:IPR014013 InterPro:IPR027076
Pfam:PF06733 Pfam:PF13307 PROSITE:PS51193 SMART:SM00488
SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0005730
GO:GO:0003677 GO:GO:0003723 GO:GO:0004003 eggNOG:COG1199
PANTHER:PTHR11472:SF5 TIGRFAMs:TIGR00604 EMBL:AC009533
IPI:IPI00872853 ProteinModelPortal:A8MPP1 SMR:A8MPP1 STRING:A8MPP1
PhosphoSite:A8MPP1 PaxDb:A8MPP1 PRIDE:A8MPP1 GeneCards:GC12M000095
HGNC:HGNC:37101 neXtProt:NX_A8MPP1 HOVERGEN:HBG058884
InParanoid:A8MPP1 OrthoDB:EOG4B5P4M Genevestigator:A8MPP1
Uniprot:A8MPP1
Length = 907
Score = 897 (320.8 bits), Expect = 1.5e-116, Sum P(3) = 1.5e-116
Identities = 205/605 (33%), Positives = 340/605 (56%)
Query: 219 VLKVYFCSRTHSQLSQFIKELRKTVFANEIKVVCLGSRKNFCINEEVLRLGNSTHINERC 278
+ K+Y CSRTHSQL+QF+ E++K+ F ++++V LGSR+N C+NE+V LG+ IN+RC
Sbjct: 228 ITKIYHCSRTHSQLAQFVHEVKKSPFGKDVRLVSLGSRQNLCVNEDVRSLGSVQLINDRC 287
Query: 279 LELQXXXXXXXXXXXXLGAEGKVRRTKAFSGCPVLRSHKLQKGFRNEISQQGALDIEDLV 338
+++Q + K RR + + CP +H+ Q G + + D+E L+
Sbjct: 288 VDMQRSRHEKKKGAEE--EKPKRRRQEKQAACPFY-NHE-QMGLLRDEALAEVKDMEQLL 343
Query: 339 HLGRHMRTCPYYGSRSMVPTADLVVLPYQSLLSKSARESLGLNLKNNIVIIDEAHNLADS 398
LG+ R CPYY SR +P A LVVLPYQ LL + R++ G+ L++ +VIIDEAHNL D+
Sbjct: 344 ALGKEARACPYYRSRLAIPAAKLVVLPYQMLLHAATRQAAGIRLQDQVVIIDEAHNLIDT 403
Query: 399 LINMYNAKITLSQLENVHSHLEKYFGRFCSLLGPGNRRYIQTLMVFTRAFLQVLLKEKDE 458
+ M++ +++ SQL HS L +Y R+ L N Y++ ++ F+ VL +
Sbjct: 404 ITGMHSVEVSGSQLCQAHSQLLQYMERYGKRLKAKNLMYLKQILYLLEKFVAVLGGNIKQ 463
Query: 459 NDVRQDSENSTGAKHAFDSSVAINEFLFSLNIDNINLVKLLKYIKESNIIHKVSGYGDKA 518
N Q S + TG + IN+FLF IDNINL K+ +Y ++S I K+ G+ ++
Sbjct: 464 NPNTQ-SLSQTGTELK-----TINDFLFQSQIDNINLFKVQRYCEKSMISRKLFGFTERY 517
Query: 519 ASL--QKGSVLKDGGENYEEG------SILSG----FQSLVDMLIS-LTNNDGDGRIIIS 565
++ + G + + + L+ Q+ V S L + +G + +
Sbjct: 518 GAVFSSREQPKLAGFQQFLQSLQPRTTEALAAPADESQASVPQPASPLMHIEGFLAALTT 577
Query: 566 K---ARPISSXXXXXXXXYLKYVMLTGEKVFSEIVEQAHAVILAGGTLQPIEETRERLFP 622
R I S LK+++L F+++V++ AV++AGGT+QP+ + R++L
Sbjct: 578 ANQDGRVILSRQGSLSESTLKFLLLNPAVHFAQVVKECRAVVIAGGTMQPVSDFRQQLLA 637
Query: 623 W--LSPNKFHFFSCSHIVPPESILPVALSCGPTGKXXXXXXXXXXXXAMIEELGLLLCNL 680
+ + FSC H++PP++I P+ + G + + M++E+G +LCNL
Sbjct: 638 CAGVEAERVVEFSCGHVIPPDNI-PLVICSGISNQPLEFTFQKRDLPQMMDEVGRILCNL 696
Query: 681 VSVVPEGIIVFFPSFEYVERVYGAWKSLGILDRIMKKKHVFREPRGNTHVESVLKEYQKT 740
VV G++ FF S+EY+ +V+ W+ G+L R+ +K +F+EP+ VE VL Y +
Sbjct: 697 CGVVSGGVVCFFSSYEYLRQVHAHWEKGGLLGRLAARKKIFQEPKSAHQVEQVLLAYSRC 756
Query: 741 IDTLSSRPKEDSTPLNGAMLLAVVGGKISEGINFSDGMGRCIVMVGLPYPSPSNIELLER 800
I ++ + A+LL+VVGGK+SEGINFSD +GRC+VMVG+P+P+ + EL E+
Sbjct: 757 IQACG----QERGQVTEALLLSVVGGKMSEGINFSDNLGRCVVMVGMPFPNIRSAELQEK 812
Query: 801 IKHIE 805
+ +++
Sbjct: 813 MAYLD 817
Score = 145 (56.1 bits), Expect = 1.5e-116, Sum P(3) = 1.5e-116
Identities = 28/45 (62%), Positives = 33/45 (73%)
Query: 20 YSIQTDFMKALYCSLENGGVSMLESPTGTGKTLSIICSALQWVVD 64
YSIQ DFM LY LE G + + ESPTGTGK+LS+IC AL W+ D
Sbjct: 20 YSIQEDFMAELYRVLEAGKIGIFESPTGTGKSLSLICGALSWLRD 64
Score = 141 (54.7 bits), Expect = 1.5e-116, Sum P(3) = 1.5e-116
Identities = 33/58 (56%), Positives = 37/58 (63%)
Query: 842 GKEYYENLCMKAVNQSIGRAIRHINDHAAILLVDLRYASESSKRSCSHPANKLPRWIK 899
GK ENLCMKAVNQSIGRAIRH D A+I+L+D RYA KLP WI+
Sbjct: 830 GKALVENLCMKAVNQSIGRAIRHQKDFASIVLLDQRYARPPVLA-------KLPAWIR 880
Score = 60 (26.2 bits), Expect = 6.8e-17, Sum P(3) = 6.8e-17
Identities = 29/125 (23%), Positives = 57/125 (45%)
Query: 316 HKLQKGFRNEISQQGALDIEDLVHLGRHM-RTCPYYGSRSMVPTAD--LVVLPYQSLLSK 372
H++Q + + +Q + E+L+ L R M T P + + + LV+ Y+S +
Sbjct: 149 HRVQLKYAAKRLRQEEEETENLLRLSREMLETGPEAERLEQLESGEEELVLAEYES--DE 206
Query: 373 SARESLGLNLKNNIVIIDEAHNLADSLINMYNAKITLSQLEN-VHSHLEKYFGRFCSLLG 431
+ + G + + ++E H + +Y+ T SQL VH + FG+ L+
Sbjct: 207 EKKVASGHRVDEDEDDLEEEH-----ITKIYHCSRTHSQLAQFVHEVKKSPFGKDVRLVS 261
Query: 432 PGNRR 436
G+R+
Sbjct: 262 LGSRQ 266
>UNIPROTKB|F1SK84 [details] [associations]
symbol:DDX11 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0030496 "midbody" evidence=IEA] [GO:0007062 "sister
chromatid cohesion" evidence=IEA] [GO:0000922 "spindle pole"
evidence=IEA] [GO:0000790 "nuclear chromatin" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004003 "ATP-dependent
DNA helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR006554 InterPro:IPR006555
InterPro:IPR010614 InterPro:IPR014013 InterPro:IPR027076
Pfam:PF06733 Pfam:PF13307 PROSITE:PS51193 SMART:SM00488
SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0003677
GO:GO:0000790 GO:GO:0004003 GO:GO:0030496 GO:GO:0000922
PANTHER:PTHR11472:SF5 TIGRFAMs:TIGR00604
GeneTree:ENSGT00530000063199 GO:GO:0007062 EMBL:CU861969
Ensembl:ENSSSCT00000000809 OMA:HQISKRD Uniprot:F1SK84
Length = 682
Score = 1001 (357.4 bits), Expect = 4.2e-115, Sum P(2) = 4.2e-115
Identities = 226/611 (36%), Positives = 351/611 (57%)
Query: 221 KVYFCSRTHSQLSQFIKELRKTVFANEIKVVCLGSRKNFCINEEVLRLGNSTHINERCLE 280
++Y+CSRTHSQL+QF+ E++++ F + ++V LGSR+N C+N++V +LG+ IN+RC++
Sbjct: 1 QIYYCSRTHSQLAQFVHEVQRSPFGKDTRLVSLGSRQNLCVNDDVRKLGSVQLINDRCVD 60
Query: 281 LQXXXXXXXXXXXXLGAEGKVRRTKAF--SGCPVLRSHKLQKGFRNEISQQGALDIEDLV 338
+Q + E K RR K + CP +LQ R+E+ GA DIE LV
Sbjct: 61 MQRSRREKS-----IAEEAKPRRRKQEQRTACPFYSHERLQL-LRDEVLV-GAKDIEQLV 113
Query: 339 HLGRHMRTCPYYGSRSMVPTADLVVLPYQSLLSKSARESLGLNLKNNIVIIDEAHNLADS 398
LG+ R CPYYGSR +P A LVVLPYQ +L + R++ G+ L+ +V++DEAHNL D+
Sbjct: 114 ALGKEARACPYYGSRFAIPAAQLVVLPYQMVLHAATRQAAGIRLQGQVVLVDEAHNLMDT 173
Query: 399 LINMYNAKITLSQLENVHSHLEKYFGRFCSLLGPGNRRYIQTLMVFTRAFLQVLLKEKDE 458
+ +++ +++ SQL HS L +Y R+ L N YI+ ++ F+ VL
Sbjct: 174 ITGIHSVEVSGSQLCQAHSQLLQYMERYGKRLKAKNLMYIKQILYLLEKFVAVL-----G 228
Query: 459 NDVRQDSENSTGAKHAFDSSVAINEFLFSLNIDNINLVKLLKYIKESNIIHKVSG----Y 514
+V+Q+ N+ A IN+FLF IDNINL K+ +Y ++S I K+ G Y
Sbjct: 229 GNVKQNP-NTQSLSQAGTELKTINDFLFQSQIDNINLFKVQRYCEKSMISRKLLGFTERY 287
Query: 515 GDKAAS----------------LQKGSVLKDGGENYEEGSI--LSGFQSLVDMLISLTNN 556
G AS LQ G V + E E G+ S + L +LT
Sbjct: 288 GAVLASPREQPRLAGFQHFLQSLQPG-VTEAPVEEEEAGAPRPASPLMHIEGFLAALTTA 346
Query: 557 DGDGRIIISKARPISSXXXXXXXXYLKYVMLTGEKVFSEIVEQAHAVILAGGTLQPIEET 616
+ DGR+I+S+ +S LK+++L F+++V++ AV++AGGT+QP+ +
Sbjct: 347 NQDGRVILSRQGSLSQSS-------LKFLLLNPAVHFAQVVKECRAVVIAGGTMQPVSDF 399
Query: 617 RERLFPW--LSPNKFHFFSCSHIVPPESILPVALSCGPTGKXXXXXXXXXXXXAMIEELG 674
RE+L + + FSC H++PP++ILP+ + GP + M++E G
Sbjct: 400 REQLLACAGVEAERVVEFSCGHVIPPDNILPLVICSGPANQQLEFTYQKRELPQMMDETG 459
Query: 675 LLLCNLVSVVPEGIIVFFPSFEYVERVYGAWKSLGILDRIMKKKHVFREPRGNTHVESVL 734
+LCNL +VVP G++ FFPS+EY +V+ W G+L R+ +K +F+EP+ VE VL
Sbjct: 460 RILCNLCNVVPGGVVCFFPSYEYQRQVHAHWDRSGLLARLAVRKKIFQEPKRANQVEQVL 519
Query: 735 KEYQKTIDTLSSRPKEDSTPLNGAMLLAVVGGKISEGINFSDGMGRCIVMVGLPYPSPSN 794
KEY + I + + GA+LL+VVGGK+SEGINFSD +GRC+VMVG+PYP+ +
Sbjct: 520 KEYSRCIKHCG----QAEGMVTGALLLSVVGGKMSEGINFSDSLGRCVVMVGMPYPNIRS 575
Query: 795 IELLERIKHIE 805
EL E++ +++
Sbjct: 576 AELQEKMAYLD 586
Score = 154 (59.3 bits), Expect = 4.2e-115, Sum P(2) = 4.2e-115
Identities = 37/66 (56%), Positives = 43/66 (65%)
Query: 842 GKEYYENLCMKAVNQSIGRAIRHINDHAAILLVDLRYASESSKRSCSHPANKLPRWIKDR 901
GK ENLCMKAVNQSIGRAIRH D A+I+L+D RYA KLP WI+DR
Sbjct: 599 GKALVENLCMKAVNQSIGRAIRHQKDFASIVLLDQRYARPPILA-------KLPAWIRDR 651
Query: 902 L-VSST 906
+ V +T
Sbjct: 652 VEVKAT 657
>UNIPROTKB|E1BL06 [details] [associations]
symbol:E1BL06 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0030496 "midbody" evidence=IEA] [GO:0007062 "sister
chromatid cohesion" evidence=IEA] [GO:0000922 "spindle pole"
evidence=IEA] [GO:0000790 "nuclear chromatin" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004003 "ATP-dependent
DNA helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR006555 InterPro:IPR010614
InterPro:IPR014013 InterPro:IPR027076 Pfam:PF06733 Pfam:PF13307
PROSITE:PS51193 SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524
GO:GO:0003677 GO:GO:0000790 GO:GO:0004003 GO:GO:0030496
GO:GO:0000922 InterPro:IPR014001 SMART:SM00487
PANTHER:PTHR11472:SF5 TIGRFAMs:TIGR00604 OMA:NLGRCVV
GeneTree:ENSGT00530000063199 GO:GO:0007062 EMBL:DAAA02014574
EMBL:DAAA02014575 EMBL:DAAA02014576 EMBL:DAAA02014577
IPI:IPI00707607 Ensembl:ENSBTAT00000009329 Uniprot:E1BL06
Length = 913
Score = 1005 (358.8 bits), Expect = 5.4e-115, Sum P(2) = 5.4e-115
Identities = 258/729 (35%), Positives = 389/729 (53%)
Query: 219 VLKVYFCSRTHSQLSQFIKELRKTVFANEIKVVCLGSRKNFCINEEVLRLGNSTHINERC 278
V K+Y+CSRTHSQL+QF+ E++K+ F + ++V LGSR+N C+N +V R G+ IN+RC
Sbjct: 223 VTKIYYCSRTHSQLAQFVHEVQKSPFGQDTRLVSLGSRQNLCVNGDV-RKGSVQLINDRC 281
Query: 279 LELQXXXXXXXXXXXXLGAEGKVRRTKAFSGCPVLRSHKLQKGFRNEISQQGALDIEDLV 338
+E+Q + RR + + CP +LQ R+E+ G D+E LV
Sbjct: 282 VEMQRSKHERKSITEEEEPTRRRRRQEPRATCPFYSYERLQL-LRDEVLV-GVKDVEQLV 339
Query: 339 HLGRHMRTCPYYGSRSMVPTADLVVLPYQSLLSKSARESLGLNLKNNIVIIDEAHNLADS 398
LG + CPYYG R +P A LVVLPYQ LL R++ G+ L+ +V+IDEAHNL D+
Sbjct: 340 ALGEEAQACPYYGGRFAIPAAQLVVLPYQMLLHAPTRQAAGIRLQGQVVVIDEAHNLIDT 399
Query: 399 LINMYNAKITLSQLENVHSHLEKYFGRFCSLLGPGNRRYIQTLMVFTRAFLQVLLKEKDE 458
+ N+++ ++ SQL HS L +Y R+ L N YI+ L+ F+ VL
Sbjct: 400 ITNIHSVEVRGSQLCQAHSQLLQYTERYGKRLKAKNLMYIKQLLYLLEKFVAVL-----G 454
Query: 459 NDVRQDSENSTGAKHAFDSSVAINEFLFSLNIDNINLVKLLKYIKESNIIHKVSGYGDK- 517
+++Q+ N+ A IN+FLF IDNINL K+ +Y ++S I K+ G+ ++
Sbjct: 455 GNIKQNP-NTQSLSQAGTELKTINDFLFQSKIDNINLFKVRRYCEKSKISRKLLGFTERY 513
Query: 518 ----AASLQ--KGSVLKDGGENYEEGSILS-------GFQSLVDMLISLTNNDGDGRIII 564
S++ K S +D ++ + G++ + G L + +G +
Sbjct: 514 GAVLVPSMEQPKLSGFQDFLQSLQPGAMAAPAAPVEVGEDRSPRPASPLMHVEGFLEALT 573
Query: 565 SK---ARPISSXXXXXXXXYLKYVMLTGEKVFSEIVEQAHAVILAGGTLQPIEETRERLF 621
+ R I S LK+++L F+++V++ AV++AGGT+QP+ + RE+L
Sbjct: 574 TANQDGRVILSRQGSLSQSSLKFLLLNPAVHFAQVVKECRAVVIAGGTMQPVSDFREQLL 633
Query: 622 PW--LSPNKFHFFSCSHIVPPESILPVALSCGPTGKXXXXXXXXXXXXAMIEELGLLLCN 679
+ + FSC H++PP+ ILP+ + GP+ + M++E G +LCN
Sbjct: 634 AGAGVEAERVVEFSCGHVIPPDHILPLIICSGPSNQMLDFTYQKRGLPQMMDETGRILCN 693
Query: 680 LVSVVPEGIIVFFPSFEYVERVYGAWKSLGILDRIMKKKHVFREPRGNTHVESVLKEYQK 739
L +VVP G++ FFPS+EY +V W+ G+L R+ +K +F+EPR VE VL EY +
Sbjct: 694 LCNVVPGGVVCFFPSYEYQHQVCTHWEKSGLLARLTIRKKIFQEPRKANRVEQVLLEYSR 753
Query: 740 TIDTLSSRPKEDSTPLNGAMLLAVVGGKISEGINFSDGMGR------CIVMVGLPYPSPS 793
I ++ GA+LL+VVGGK+SEGINFSD +GR V++G+ PSP
Sbjct: 754 CIKHCGQAQGTET----GALLLSVVGGKMSEGINFSDDLGRPQRDGRASVLLGVFVPSPV 809
Query: 794 NIELLERIKHIEGLGDTNSKTLNTSASDAYYNGDAQAGFGILRSCRGRGKEYYENLCMKA 853
+ G + AS G QA R GK ENLCMKA
Sbjct: 810 ----------VSAAGAHEAHWSRPRASP---RGPGQA-----RP----GKVLVENLCMKA 847
Query: 854 VNQSIGRAIRHINDHAAILLVDLRYASESSKRSCSHPANKLPRWIKDRL-VSSTNNYGEV 912
VNQSIGRAIRH D A+I+L+D RYAS + + KLP WI+DR+ V +T +G
Sbjct: 848 VNQSIGRAIRHQKDFASIVLLDQRYASPAIQA-------KLPAWIRDRVEVKAT--FGPA 898
Query: 913 HRLLHQFFK 921
L +F +
Sbjct: 899 FAALRKFHR 907
Score = 149 (57.5 bits), Expect = 5.4e-115, Sum P(2) = 5.4e-115
Identities = 42/122 (34%), Positives = 62/122 (50%)
Query: 20 YSIQTDFMKALYCSLENGGVSMLESPTGTGKTLSIICSALQWVVDXXXXXXXXXXYETMI 79
Y+IQ DFM ALY LE G + + ESPTGTGK+LS+IC AL W+ D E ++
Sbjct: 20 YAIQKDFMAALYQVLEAGKIGIFESPTGTGKSLSLICGALSWLRDFEQKKRQEE--ERLL 77
Query: 80 KSDHSFTNNG---------DCSSND-------EPDWMRNFVVN---RDF--QAEDAKIKK 118
+ ++NG C + EPDW+ FV RD + ++ ++++
Sbjct: 78 GAGAPASHNGLAPALGLPSSCQGSPGTPGATGEPDWITQFVQKKEERDLVDRLKEEQVRR 137
Query: 119 KK 120
KK
Sbjct: 138 KK 139
>RGD|1306675 [details] [associations]
symbol:Ddx11 "DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11"
species:10116 "Rattus norvegicus" [GO:0000790 "nuclear chromatin"
evidence=ISO] [GO:0000922 "spindle pole" evidence=ISO] [GO:0003677
"DNA binding" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;ISO] [GO:0007062 "sister chromatid cohesion"
evidence=ISO] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISO] [GO:0030496 "midbody" evidence=ISO]
InterPro:IPR006554 InterPro:IPR006555 InterPro:IPR010614
InterPro:IPR014013 InterPro:IPR027076 Pfam:PF06733 Pfam:PF13307
PROSITE:PS51193 SMART:SM00488 SMART:SM00491 RGD:1306675
INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0003677 GO:GO:0000790
GO:GO:0004003 GO:GO:0030496 GO:GO:0000922 PANTHER:PTHR11472:SF5
TIGRFAMs:TIGR00604 GeneTree:ENSGT00530000063199 GO:GO:0007062
OrthoDB:EOG4B5P4M IPI:IPI00765140 Ensembl:ENSRNOT00000016536
UCSC:RGD:1306675 Uniprot:D3ZT96
Length = 882
Score = 826 (295.8 bits), Expect = 2.4e-110, Sum P(3) = 2.4e-110
Identities = 203/613 (33%), Positives = 331/613 (53%)
Query: 219 VLKVYFCSRTHSQLSQFIKELRKTVFANEIKVVCLGSRKNFCINEEVLRLGNSTHI-NER 277
+ K+Y+CSRTHSQL+QF++E++K+ F E ++V LGSR++ C+NE+V LG S H+ N+R
Sbjct: 198 ITKIYYCSRTHSQLAQFVREVQKSPFGKETRLVSLGSRQSLCVNEDVKSLG-SVHLMNDR 256
Query: 278 CLELQXXXXXXXXXXXXLGAEG-KVRRTKAFSGCPVLRSHKLQKGFRNEISQQGALDIED 336
C+++Q +G + K RR K + CP +H+ + R+EI + D+E
Sbjct: 257 CVDMQRRKHKKMR----IGEDKPKRRRQKMQASCPFY-NHEQMELLRDEILLE-VKDMEQ 310
Query: 337 LVHLGRHMRTCPYYGSRSMVPTAD--LVVLPYQSLLSKSARESLGLNLKNNIVIIDEAHN 394
LV LG+ + CPYYGSR +P A LV+L +++L+ + +G + I DE H
Sbjct: 311 LVALGKEAQACPYYGSRFAIPAAQQVLVILLLRAVLTWMSLLYVGAXXQGQXXIXDEXHX 370
Query: 395 LADSLINMYNAKITLSQLENVHSHLEKYFGRFCSLLGPGNRRYIQTLMVFTRAFLQVLLK 454
D N+ ++ QL HS L +Y R+ L N YI+ ++ F+ VL
Sbjct: 371 XXDXXXNIXQXQVCGKQLCQAHSQLLQYMERYRKRLKAKNLMYIKQILYLLDKFVAVLGG 430
Query: 455 EKDENDVRQDSENSTGAK------HAFDSSVA-INEFLFSLNIDNINLVK---------- 497
+N Q S TG++ F S V IN F ++ L +
Sbjct: 431 NVKQNPSTQ-SLPQTGSELQSINDFLFQSQVDNINLFKVQRYLEKSMLSRKLFGFTECFG 489
Query: 498 -LLKYIKESNIIHKVSGYGDKAASLQKGSVLKDGGENYEEGSI--LSGFQSLVDMLISLT 554
+L + +S + G+ SLQ G +D E + ++ S + L +LT
Sbjct: 490 VVLPSLSDSEENRGLGGFQQFLKSLQSGPP-EDSLEEGQAVALRPASPLMHIEAFLEALT 548
Query: 555 NNDGDGRIIISKARPISSXXXXXXXXYLKYVMLTGEKVFSEIVEQAHAVILAGGTLQPIE 614
+ DGR+I+++ + LK+++L F+++V++ A+++AGGT+QP+
Sbjct: 549 TANQDGRVIVNRQGSVGQSS-------LKFLLLNPAVHFAQVVKECRALVIAGGTMQPVS 601
Query: 615 ETRERLFPW--LSPNKFHFFSCSHIVPPESILPVALSCGPTGKXXXXXXXXXXXXAMIEE 672
+ RE+L + ++ FSC H++PP++ILP+ + GP+ + M+EE
Sbjct: 602 DFREQLLACSGVEASRVVEFSCGHVIPPDNILPLIICSGPSNQQLEFTYQRRELPQMMEE 661
Query: 673 LGLLLCNLVSVVPEGIIVFFPSFEYVERVYGAWKSLGILDRIMKKKHVFREPRGNTHVES 732
G +LCNL +VVP G++ F PS+EY+ +V+ W G+L R+ +K +F+EP+ + VE
Sbjct: 662 TGRILCNLCNVVPGGMVCFLPSYEYLRQVHAHWDKTGLLARLSVRKKIFQEPKRASQVEQ 721
Query: 733 VLKEYQKTIDTLSSRPKEDSTPLNGAMLLAVVGGKISEGINFSDGMGRCIVMVGLPYPSP 792
VL Y I + S L GA+LL+VVGGK+SEGINFSD +GRC+VMVG+PYP+
Sbjct: 722 VLTAYSTCIASCS----HSEGHLTGALLLSVVGGKMSEGINFSDDLGRCVVMVGMPYPNI 777
Query: 793 SNIELLERIKHIE 805
+ EL E++ +++
Sbjct: 778 KSPELQEKMAYLD 790
Score = 158 (60.7 bits), Expect = 2.4e-110, Sum P(3) = 2.4e-110
Identities = 40/88 (45%), Positives = 52/88 (59%)
Query: 842 GKEYYENLCMKAVNQSIGRAIRHINDHAAILLVDLRYASESSKRSCSHPANKLPRWIKDR 901
G ENLCMKA+NQSIGRAIRH D A+I+L+D RYA S KLP WI+DR
Sbjct: 803 GTVLIENLCMKAINQSIGRAIRHQKDFASIVLLDHRYARPSILA-------KLPAWIRDR 855
Query: 902 L-VSSTNNYGEVHRLLHQFFKFNKNRGC 928
+ V +T +G + +F + K+ C
Sbjct: 856 VEVKAT--FGPAFAAMRKFHR-EKSHPC 880
Score = 140 (54.3 bits), Expect = 2.4e-110, Sum P(3) = 2.4e-110
Identities = 27/45 (60%), Positives = 32/45 (71%)
Query: 20 YSIQTDFMKALYCSLENGGVSMLESPTGTGKTLSIICSALQWVVD 64
Y IQ DFM LY LE G + + ESPTGTGK+LS+IC AL W+ D
Sbjct: 20 YPIQKDFMAELYKVLEAGKIGIFESPTGTGKSLSLICGALSWLRD 64
>UNIPROTKB|Q96FC9 [details] [associations]
symbol:DDX11 "Probable ATP-dependent RNA helicase DDX11"
species:9606 "Homo sapiens" [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0019048 "virus-host interaction" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0051539 "4 iron,
4 sulfur cluster binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0007062 "sister chromatid
cohesion" evidence=IDA] [GO:0000790 "nuclear chromatin"
evidence=IDA] [GO:0030496 "midbody" evidence=IDA] [GO:0000922
"spindle pole" evidence=IDA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IDA] [GO:0004386 "helicase activity"
evidence=IDA] [GO:0000086 "G2/M transition of mitotic cell cycle"
evidence=TAS] [GO:0000070 "mitotic sister chromatid segregation"
evidence=TAS] [GO:0000084 "S phase of mitotic cell cycle"
evidence=TAS] [GO:0003678 "DNA helicase activity" evidence=TAS]
[GO:0008284 "positive regulation of cell proliferation"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006987
"activation of signaling protein activity involved in unfolded
protein response" evidence=TAS] [GO:0030968 "endoplasmic reticulum
unfolded protein response" evidence=TAS] InterPro:IPR006554
InterPro:IPR006555 InterPro:IPR010614 InterPro:IPR014013
InterPro:IPR027076 Pfam:PF06733 Pfam:PF13307 PROSITE:PS00690
PROSITE:PS51193 SMART:SM00488 SMART:SM00491 INTERPRO:IPR013020
GO:GO:0005524 Reactome:REACT_116125 GO:GO:0000086 GO:GO:0019048
GO:GO:0005654 GO:GO:0006987 GO:GO:0005730 GO:GO:0046872
GO:GO:0003677 GO:GO:0008284 GO:GO:0051539 GO:GO:0003723
GO:GO:0000790 GO:GO:0000070 GO:GO:0004003 GO:GO:0030496
GO:GO:0000922 GO:GO:0000084 GO:GO:0003678 GO:GO:0008094
eggNOG:COG1199 KO:K11273 PANTHER:PTHR11472:SF5 TIGRFAMs:TIGR00604
CleanEx:HS_CHL1 OMA:NLGRCVV GO:GO:0007062 HOVERGEN:HBG058884
OrthoDB:EOG4B5P4M EMBL:X99583 EMBL:U33833 EMBL:U75967 EMBL:U75968
EMBL:BC050069 EMBL:BC050522 IPI:IPI00012188 IPI:IPI00332293
IPI:IPI00657836 IPI:IPI00658184 IPI:IPI00942296 PIR:G02071
RefSeq:NP_001244073.1 RefSeq:NP_001244074.1 RefSeq:NP_004390.3
RefSeq:NP_689651.1 UniGene:Hs.443960 ProteinModelPortal:Q96FC9
SMR:Q96FC9 IntAct:Q96FC9 MINT:MINT-1371028 STRING:Q96FC9
PhosphoSite:Q96FC9 DMDM:74731686 PaxDb:Q96FC9 PRIDE:Q96FC9
DNASU:1663 Ensembl:ENST00000228264 Ensembl:ENST00000251758
Ensembl:ENST00000350437 Ensembl:ENST00000407793
Ensembl:ENST00000435753 Ensembl:ENST00000542838
Ensembl:ENST00000545668 GeneID:1663 KEGG:hsa:1663 UCSC:uc001rjr.1
UCSC:uc001rjs.1 UCSC:uc001rjt.1 UCSC:uc001rju.1 CTD:1663
GeneCards:GC12P031226 HGNC:HGNC:2736 MIM:601150 MIM:613398
neXtProt:NX_Q96FC9 Orphanet:280558 PharmGKB:PA27201
InParanoid:Q96FC9 PhylomeDB:Q96FC9 GenomeRNAi:1663 NextBio:6842
ArrayExpress:Q96FC9 Bgee:Q96FC9 CleanEx:HS_DDX11
Genevestigator:Q96FC9 GermOnline:ENSG00000013573 Uniprot:Q96FC9
Length = 970
Score = 946 (338.1 bits), Expect = 2.4e-108, Sum P(2) = 2.4e-108
Identities = 212/605 (35%), Positives = 342/605 (56%)
Query: 219 VLKVYFCSRTHSQLSQFIKELRKTVFANEIKVVCLGSRKNFCINEEVLRLGNSTHINERC 278
+ K+Y+CSRTHSQL+QF+ E++K+ F ++++V LGSR+N C+NE+V LG+ IN+RC
Sbjct: 226 ITKIYYCSRTHSQLAQFVHEVKKSPFGKDVRLVSLGSRQNLCVNEDVKSLGSVQLINDRC 285
Query: 279 LELQXXXXXXXXXXXXLGAEGKVRRTKAFSGCPVLRSHKLQKGFRNEISQQGALDIEDLV 338
+++Q + K RR + + CP +H+ Q G + + D+E L+
Sbjct: 286 VDMQRSRHEKKKGAEE--EKPKRRRQEKQAACPFY-NHE-QMGLLRDEALAEVKDMEQLL 341
Query: 339 HLGRHMRTCPYYGSRSMVPTADLVVLPYQSLLSKSARESLGLNLKNNIVIIDEAHNLADS 398
LG+ R CPYYGSR +P A LVVLPYQ LL + R++ G+ L++ +VIIDEAHNL D+
Sbjct: 342 ALGKEARACPYYGSRLAIPAAQLVVLPYQMLLHAATRQAAGIRLQDQVVIIDEAHNLIDT 401
Query: 399 LINMYNAKITLSQLENVHSHLEKYFGRFCSLLGPGNRRYIQTLMVFTRAFLQVLLKEKDE 458
+ M++ +++ SQL HS L +Y R+ L N Y++ ++ F+ VL +
Sbjct: 402 ITGMHSVEVSGSQLCQAHSQLLQYVERYGKRLKAKNLMYLKQILYLLEKFVAVLGGNIKQ 461
Query: 459 NDVRQDSENSTGAKHAFDSSVAINEFLFSLNIDNINLVKLLKYIKESNIIHKVSG----Y 514
N Q S + TG + IN+FLF IDNINL K+ +Y ++S I K+ G Y
Sbjct: 462 NPNTQ-SLSQTGTELK-----TINDFLFQSQIDNINLFKVQRYCEKSMISRKLFGFTERY 515
Query: 515 GDKAASLQKGSV------LKDGGENYEEGSILSGFQSLVDML---ISLTNNDGDGRIIIS 565
G +S ++ + L+ E +S L L + G + +
Sbjct: 516 GAVFSSREQPKLAGFQQFLQSLQPRTTEALAAPADESQASTLRPASPLMHIQGFLAALTT 575
Query: 566 K---ARPISSXXXXXXXXYLKYVMLTGEKVFSEIVEQAHAVILAGGTLQPIEETRERLFP 622
R I S LK+++L F+++V++ AV++AGGT+QP+ + R++L
Sbjct: 576 ANQDGRVILSRQGSLSQSTLKFLLLNPAVHFAQVVKECRAVVIAGGTMQPVSDFRQQLLA 635
Query: 623 W--LSPNKFHFFSCSHIVPPESILPVALSCGPTGKXXXXXXXXXXXXAMIEELGLLLCNL 680
+ + FSC H++PP++ILP+ + G + + M++E+G +LCNL
Sbjct: 636 CAGVEAERVVEFSCGHVIPPDNILPLVICSGISNQPLEFTFQKRELPQMMDEVGRILCNL 695
Query: 681 VSVVPEGIIVFFPSFEYVERVYGAWKSLGILDRIMKKKHVFREPRGNTHVESVLKEYQKT 740
VVP G++ FFPS+EY+ +V+ W+ G+L R+ +K +F+EP+ VE VL Y +
Sbjct: 696 CGVVPGGVVCFFPSYEYLRQVHAHWEKGGLLGRLAARKKIFQEPKSAHQVEQVLLAYSRC 755
Query: 741 IDTLSSRPKEDSTPLNGAMLLAVVGGKISEGINFSDGMGRCIVMVGLPYPSPSNIELLER 800
I ++ + GA+LL+VVGGK+SEGINFSD +GRC+VMVG+P+P+ + EL E+
Sbjct: 756 IQACG----QERGQVTGALLLSVVGGKMSEGINFSDNLGRCVVMVGMPFPNIRSAELQEK 811
Query: 801 IKHIE 805
+ +++
Sbjct: 812 MAYLD 816
Score = 145 (56.1 bits), Expect = 2.4e-108, Sum P(2) = 2.4e-108
Identities = 28/45 (62%), Positives = 33/45 (73%)
Query: 20 YSIQTDFMKALYCSLENGGVSMLESPTGTGKTLSIICSALQWVVD 64
YSIQ DFM LY LE G + + ESPTGTGK+LS+IC AL W+ D
Sbjct: 20 YSIQEDFMAELYRVLEAGKIGIFESPTGTGKSLSLICGALSWLRD 64
>POMBASE|SPAC3G6.11 [details] [associations]
symbol:chl1 "ATP-dependent DNA helicase Chl1 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000790 "nuclear
chromatin" evidence=IC] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0006342
"chromatin silencing" evidence=NAS] [GO:0007064 "mitotic sister
chromatid cohesion" evidence=ISO] [GO:0032508 "DNA duplex
unwinding" evidence=IEA] [GO:0045910 "negative regulation of DNA
recombination" evidence=ISO] InterPro:IPR006554 InterPro:IPR006555
InterPro:IPR010614 InterPro:IPR014013 InterPro:IPR027076
Pfam:PF06733 Pfam:PF13307 PROSITE:PS51193 SMART:SM00488
SMART:SM00491 PomBase:SPAC3G6.11 INTERPRO:IPR013020 GO:GO:0005829
GO:GO:0005524 EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0003677
GO:GO:0000790 GO:GO:0004003 GO:GO:0006342 GO:GO:0007064
GO:GO:0045910 eggNOG:COG1199 KO:K11273 PANTHER:PTHR11472:SF5
TIGRFAMs:TIGR00604 PIR:T38730 RefSeq:NP_594977.1
ProteinModelPortal:O14147 STRING:O14147 EnsemblFungi:SPAC3G6.11.1
GeneID:2543118 KEGG:spo:SPAC3G6.11 HOGENOM:HOG000241266 OMA:NLGRCVV
OrthoDB:EOG408RH6 NextBio:20804145 Uniprot:O14147
Length = 844
Score = 565 (203.9 bits), Expect = 3.8e-97, Sum P(4) = 3.8e-97
Identities = 145/444 (32%), Positives = 230/444 (51%)
Query: 310 CPVLRSHKLQKGFRNEISQQGALDIEDLVHLGRHMRTCPYYGSRSMVPTADLVVLPYQSL 369
CP L+ + FR+E + +DIE+LV LG+ ++ CPYYG+R V +A +V LPY L
Sbjct: 283 CPFLQDNTQLWDFRDEALAE-IMDIEELVELGQRLKVCPYYGTREAVDSAQIVTLPYPLL 341
Query: 370 LSKSARESLGLNLKNNIVIIDEAHNLADSLINMYNAKITLSQLENVHSHLEKYFGRFCSL 429
L +SAR +L L LK+NI IIDEAHNL D++ +M+++ I+ Q+ + L++YF RF
Sbjct: 342 LQESARNALNLTLKDNICIIDEAHNLIDAICSMHSSSISFRQVCIAETQLQQYFLRFEKR 401
Query: 430 LGPGNRRYIQTLMVFTRAFLQVLLKEKDENDVRQDSENSTGAKHAFDSSVAINEFLFSLN 489
L NR +I+ L+ L N + E +T +K + ++ L S
Sbjct: 402 LNGNNRMHIKQLIKVVYNLKSFFL-----NCL----ETNTNSK-----VINVDSLLVSNG 447
Query: 490 IDNINLVKLLKYIKESNIIHKVSGYGDKAASL--QKGSVLKD-------GGENYEEGSIL 540
D INL L +Y+ S + KV GY SL Q+ L D G YEE
Sbjct: 448 ADQINLHHLSEYLNVSKLARKVDGYTKYMHSLGTQELESLNDLRSERFSNGNGYEEDPYT 507
Query: 541 SGFQSLVDMLISLTNNDGDGRIIISKARPISSXXXXXXXXYLKYVMLTGEKVFSEIVEQA 600
L L+++ N +G++ K YLKY++L K + EQ
Sbjct: 508 PVLMQLESFLLNIANPAPEGKLFYEKQ--------TGDNPYLKYLLLDPSKHVEILTEQC 559
Query: 601 HAVILAGGTLQPIEETRERLFPWLSPNKFHFFSCSHIVPPESILPVALSCGPTGKXXXXX 660
+V LAGGT+ PI++ LF ++ FSC HIVPPE+I + +S GP G
Sbjct: 560 RSVNLAGGTMSPIDDFITLLFSD-EQSRILPFSCDHIVPPENITTILVSQGPAGVPFEFT 618
Query: 661 XXXXXXXAMIEELGLLLCNLVSVVPEGIIVFFPSFEYVERVYGAWKSLGILDRIMKKKHV 720
++++LG N +S++P+G++VFFPSF ++++ W+ GI +R+ KK +
Sbjct: 619 HKRKDDENLLKDLGRTFQNFISIIPDGVVVFFPSFAFLQQAVKVWEMNGITNRLNAKKPL 678
Query: 721 FREPR--GNTHVESVLKEYQKTID 742
F E + G+ +++ + Y++++D
Sbjct: 679 FIESKDFGDNPLDT-FEHYKQSVD 701
Score = 406 (148.0 bits), Expect = 1.1e-59, Sum P(3) = 1.1e-59
Identities = 108/359 (30%), Positives = 185/359 (51%)
Query: 479 VAINEFLFSLNIDNINLVKLLKYIKESNIIHKVSGYGDKAASL--QKGSVLKD-GGENYE 535
+ ++ L S D INL L +Y+ S + KV GY SL Q+ L D E +
Sbjct: 437 INVDSLLVSNGADQINLHHLSEYLNVSKLARKVDGYTKYMHSLGTQELESLNDLRSERFS 496
Query: 536 EGSILSGFQS--LVDMLISLTNNDGDGRIIISKARPISSXXXXXXXX-----YLKYVMLT 588
G+ G++ +L+ L + +++ A P YLKY++L
Sbjct: 497 NGN---GYEEDPYTPVLMQLES------FLLNIANPAPEGKLFYEKQTGDNPYLKYLLLD 547
Query: 589 GEKVFSEIVEQAHAVILAGGTLQPIEETRERLFPWLSPNKFHFFSCSHIVPPESILPVAL 648
K + EQ +V LAGGT+ PI++ LF ++ FSC HIVPPE+I + +
Sbjct: 548 PSKHVEILTEQCRSVNLAGGTMSPIDDFITLLFSD-EQSRILPFSCDHIVPPENITTILV 606
Query: 649 SCGPTGKXXXXXXXXXXXXAMIEELGLLLCNLVSVVPEGIIVFFPSFEYVERVYGAWKSL 708
S GP G ++++LG N +S++P+G++VFFPSF ++++ W+
Sbjct: 607 SQGPAGVPFEFTHKRKDDENLLKDLGRTFQNFISIIPDGVVVFFPSFAFLQQAVKVWEMN 666
Query: 709 GILDRIMKKKHVFREPR--GNTHVESVLKEYQKTIDTLSSRPKEDSTPLNGAMLLAVVGG 766
GI +R+ KK +F E + G+ +++ + Y++++D L+G ML +V+GG
Sbjct: 667 GITNRLNAKKPLFIESKDFGDNPLDT-FEHYKQSVDA----------GLSG-MLFSVIGG 714
Query: 767 KISEGINFSDGMGRCIVMVGLPYPSPSNIELLERIKHIEGLGDTNSKTLNTS-ASDAYY 824
++SEGINFSD +GR +++VG+P+P+ ++E ++ ++E K +N AS +Y
Sbjct: 715 RLSEGINFSDKLGRAVMVVGMPFPNSQDVEWQAKVSYVEE--KAKEKGINAKQASQEFY 771
Score = 191 (72.3 bits), Expect = 3.8e-97, Sum P(4) = 3.8e-97
Identities = 50/127 (39%), Positives = 71/127 (55%)
Query: 798 LERIKHIEGLGDTNSKTLNTSASDAYYNGDAQAGFGILRSCRGRGKEYYENLCMKAVNQS 857
L R + G+ NS+ + A +Y A+ GI + + +E+YEN CM+AVNQS
Sbjct: 726 LGRAVMVVGMPFPNSQDVEWQAKVSYVEEKAKEK-GI--NAKQASQEFYENTCMRAVNQS 782
Query: 858 IGRAIRHINDHAAILLVDLRYASESSKRSCSHPANKLPRWIKDRLVSSTNNYGEVHRLLH 917
IGRAIRH +D+A+I+L+D RY S +R KLP W+ + SS N +G R L
Sbjct: 783 IGRAIRHRDDYASIILLDSRYNRSSIQR-------KLPNWLSKNIHSSPN-FGPAIRQLA 834
Query: 918 QFFKFNK 924
FF+ K
Sbjct: 835 TFFRAKK 841
Score = 177 (67.4 bits), Expect = 3.8e-97, Sum P(4) = 3.8e-97
Identities = 35/67 (52%), Positives = 48/67 (71%)
Query: 219 VLKVYFCSRTHSQLSQFIKELRKT---VFANEIKVVCLGSRKNFCINEEVLRLGNSTHIN 275
V K+YF SRTHSQL Q ++E++K F+ I+VV L SRKN CIN EV +L ++ +N
Sbjct: 211 VQKIYFTSRTHSQLQQLVQEIKKLNNQTFSTPIRVVSLASRKNLCINNEVRKLRPTSALN 270
Query: 276 ERCLELQ 282
E+C+ELQ
Sbjct: 271 EKCIELQ 277
Score = 154 (59.3 bits), Expect = 3.8e-97, Sum P(4) = 3.8e-97
Identities = 36/148 (24%), Positives = 78/148 (52%)
Query: 20 YSIQTDFMKALYCSLENGGVSMLESPTGTGKTLSIICSALQWVVDXXXXXXXXXXYETMI 79
Y IQ +FM++LY S+ +G + + ESPTGTGK+LS+IC++L W+ + ++
Sbjct: 20 YDIQLEFMRSLYSSISDGKIGIFESPTGTGKSLSLICASLTWLDEHGG---------VLL 70
Query: 80 KSDHSFTNNGDCSSNDEPDWM--RNFVVNRDFQAED-AKIKKKKNGCGLGKTGERKHREI 136
+ + +N +S+ PDW+ ++ + +D E A+++++ + K + + ++
Sbjct: 71 EDNEKSNDNKSNTSSKIPDWVLEQDLKIQKDLVKETHARLEQRLEE--IRKRNQSRKNQM 128
Query: 137 STDTFSHSMEKDKCFTKKECENLQSIND 164
S ++ ++ E + E + N+
Sbjct: 129 SNNSTTYHRETKRRNINAEASTSDNCNN 156
Score = 47 (21.6 bits), Expect = 8.6e-11, Sum P(2) = 8.6e-11
Identities = 27/122 (22%), Positives = 52/122 (42%)
Query: 500 KYIK-ESNIIHKVSGYGDKAASLQK-GSVLKDGGENYEEGSILSGFQSLVDMLISLTNND 557
K +K ++N H + Y + ++ S + DG E +G +SL + SLT D
Sbjct: 5 KEVKFKTNFHHPYTPYDIQLEFMRSLYSSISDGKIGIFESPTGTG-KSLSLICASLTWLD 63
Query: 558 GDGRIIISKARPISSXXXXXXXXYLKYVMLTGEKVFSEIVEQAHAVILAGGTLQPIEETR 617
G +++ + +V+ K+ ++V++ HA + Q +EE R
Sbjct: 64 EHGGVLLEDNEKSNDNKSNTSSKIPDWVLEQDLKIQKDLVKETHARLE-----QRLEEIR 118
Query: 618 ER 619
+R
Sbjct: 119 KR 120
Score = 41 (19.5 bits), Expect = 8.5e-70, Sum P(3) = 8.5e-70
Identities = 7/14 (50%), Positives = 12/14 (85%)
Query: 228 THSQLSQFIKELRK 241
TH++L Q ++E+RK
Sbjct: 106 THARLEQRLEEIRK 119
Score = 41 (19.5 bits), Expect = 7.5e-20, Sum P(3) = 7.5e-20
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 802 KHIEGLGDTNSKTLNTSASDAYYNGD 827
K++ LG ++LN S+ + NG+
Sbjct: 474 KYMHSLGTQELESLNDLRSERFSNGN 499
>FB|FBgn0026876 [details] [associations]
symbol:CG11403 species:7227 "Drosophila melanogaster"
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISS]
[GO:0006289 "nucleotide-excision repair" evidence=ISS] [GO:0004386
"helicase activity" evidence=ISS] [GO:0032508 "DNA duplex
unwinding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR006555
InterPro:IPR010614 InterPro:IPR014013 InterPro:IPR027076
Pfam:PF06733 Pfam:PF13307 PROSITE:PS51193 SMART:SM00491
INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
EMBL:AE014298 GO:GO:0006200 GO:GO:0004003 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 eggNOG:COG1199 KO:K11273
PANTHER:PTHR11472:SF5 TIGRFAMs:TIGR00604 OMA:NLGRCVV
GeneTree:ENSGT00530000063199 EMBL:AL121806 EMBL:AY058540
RefSeq:NP_569898.1 UniGene:Dm.4169 SMR:Q9XZS9 STRING:Q9XZS9
EnsemblMetazoa:FBtr0070245 GeneID:31072 KEGG:dme:Dmel_CG11403
UCSC:CG11403-RA FlyBase:FBgn0026876 InParanoid:Q9XZS9
OrthoDB:EOG4Q83CB GenomeRNAi:31072 NextBio:771801 Uniprot:Q9XZS9
Length = 861
Score = 433 (157.5 bits), Expect = 1.8e-95, Sum P(4) = 1.8e-95
Identities = 109/294 (37%), Positives = 167/294 (56%)
Query: 516 DKAASLQKGSVLKDGGENYEEGSILSGFQSLVDMLISLTNNDGDGRIIISKARPISSXXX 575
DKA LQ+ K + EE + S + L+ L +LT+N DGRI++ P+
Sbjct: 513 DKAEELQEQQ--KPTKKPVEEVAP-SPIRPLLAFLETLTSNAEDGRILVD---PVGGT-- 564
Query: 576 XXXXXYLKYVMLTGEKVFSEIVEQAHAVILAGGTLQPIEETRERLFPWLSPNKFHFFSCS 635
LKY++L + F++IV +A A+++AGGT+QP +E +E+LF F +
Sbjct: 565 ------LKYILLDPAEQFADIVAEARAIVIAGGTMQPTKELKEQLFTGCHDRLVERFY-N 617
Query: 636 HIVPPESILPVALSCGPTGKXXXXXXXXXXXXAMIEELGLLLCNLVSVVPEGIIVFFPSF 695
H+V ++ILP +S GP+G M+ EL ++L NL VVP G++ F PS+
Sbjct: 618 HVVANDAILPFVISNGPSGAPLSFKFAHRGSAEMLRELSMILRNLCQVVPGGVVCFLPSY 677
Query: 696 EYVERVYGAWKSLGILDRIMKKKHVFREPRGNTHVESVLKEYQKTIDTLSSRPKEDSTPL 755
EY+++VY + G L+ I +K VFRE G+ E +L Y I RP
Sbjct: 678 EYLDKVYKYLEQSGTLETISGRKSVFREVSGSA--EQLLDNYALAI----KRPAS----- 726
Query: 756 NGAMLLAVVGGKISEGINFSDGMGRCIVMVGLPYPSPSNIELLERIKHI-EGLG 808
GA+LL+VVGGK+SEG+NF+D +GR +++VGLPY + + EL +R++H+ E LG
Sbjct: 727 YGALLLSVVGGKLSEGLNFADDLGRAVLVVGLPYSNSLSPELRQRMQHLDEKLG 780
Score = 386 (140.9 bits), Expect = 1.8e-95, Sum P(4) = 1.8e-95
Identities = 103/299 (34%), Positives = 154/299 (51%)
Query: 220 LKVYFCSRTHSQLSQFIKELRKTVFANEIKVVCLGSRKNFCINEEVLRLGNSTHINERCL 279
++++FCSRTHSQL+Q + ELRKT ++ + LGSR+ C N V +L + +NERCL
Sbjct: 188 VQIFFCSRTHSQLAQIVAELRKTPHGQSVRSISLGSRQQLCGNPAVRKLKHVGLMNERCL 247
Query: 280 ELQXXXXXXXXXXXXLGAEGKVRRT-KAFSGCPVLRSHKLQKGFRNEISQQGALDIEDLV 338
++ K R T +A S CP ++ L + R +++ LDIE+L
Sbjct: 248 DMATKKARP-------NPSKKSRLTAEANSRCP-FKAASLVESLR-DLALTEPLDIEELA 298
Query: 339 HLGRHMRTCPYYGSRSMVPTADLVVLPYQSLLSKSARESLGLNLKNNIVIIDEAHNLADS 398
+ G C YY SRS V A L++LPYQ LL KSAR LG++LK +IVI+DEAHNL DS
Sbjct: 299 NEGTACGGCSYYASRSAVEHAQLILLPYQLLLQKSARNQLGISLKGSIVIVDEAHNLLDS 358
Query: 399 LINMYNAKITLSQLENVHSHLEKYFGRFCSLLGPGNRRYIQTLMVFTRAFLQVLLKEKDE 458
+ ++ ++I+ QLE + Y F N I ++ R L++L
Sbjct: 359 VAQLHGSEISRQQLERAKVQISGYKDHFQKRFTTKNLLKINQIIFIIRRLLKIL------ 412
Query: 459 NDVRQDSENSTGAKHAFDSSVAINEFLFSLNIDNINLVKLLKYIKESNIIHKVSGYGDK 517
D R++ + S G S + E + NI+L +LL + + KV G D+
Sbjct: 413 -DQRKELQ-SNGC-----SMMRTYELTAEGDFFNIDLCELLDFCARTRFARKVQGRADR 464
Score = 179 (68.1 bits), Expect = 1.8e-95, Sum P(4) = 1.8e-95
Identities = 38/85 (44%), Positives = 51/85 (60%)
Query: 840 GRGKEYYENLCMKAVNQSIGRAIRHINDHAAILLVDLRYASESSKRSCSHPANKLPRWIK 899
G G EYYENLC+KAVNQ IGRA+RHI D+A + L+D R+A + KLP+WI
Sbjct: 782 GAGNEYYENLCVKAVNQCIGRAVRHIKDYACVYLLDKRFADPKIR-------GKLPKWIS 834
Query: 900 DRLV---SSTNNYGEVHRLLHQFFK 921
+V ++ +G V +FFK
Sbjct: 835 RHIVEANAANGGFGAVQGRTARFFK 859
Score = 118 (46.6 bits), Expect = 1.8e-95, Sum P(4) = 1.8e-95
Identities = 22/43 (51%), Positives = 29/43 (67%)
Query: 20 YSIQTDFMKALYCSLENGGVSMLESPTGTGKTLSIICSALQWV 62
Y IQ M+ L+ LE G V + ESPTGTGK+L++ C AL W+
Sbjct: 25 YEIQEQLMQELFQVLERGQVGIFESPTGTGKSLTLTCGALTWL 67
Score = 43 (20.2 bits), Expect = 1.1e-59, Sum P(4) = 1.1e-59
Identities = 8/28 (28%), Positives = 16/28 (57%)
Query: 103 FVVNRDFQAEDAKIKKKKNGCGLGKTGE 130
F++ R + D + + + NGC + +T E
Sbjct: 403 FIIRRLLKILDQRKELQSNGCSMMRTYE 430
Score = 40 (19.1 bits), Expect = 1.0e-53, Sum P(4) = 1.0e-53
Identities = 7/19 (36%), Positives = 13/19 (68%)
Query: 495 LVKLLKYIKESNIIHKVSG 513
L K+ KY+++S + +SG
Sbjct: 680 LDKVYKYLEQSGTLETISG 698
Score = 37 (18.1 bits), Expect = 6.2e-16, Sum P(3) = 6.2e-16
Identities = 7/33 (21%), Positives = 19/33 (57%)
Query: 795 IELLERIKHIEGLGDTNSKTLNTSASDAYYNGD 827
+++L++ K ++ G + +T +A ++N D
Sbjct: 409 LKILDQRKELQSNGCSMMRTYELTAEGDFFNID 441
>UNIPROTKB|F1NN99 [details] [associations]
symbol:DDX11 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0000790 "nuclear chromatin"
evidence=IEA] [GO:0000922 "spindle pole" evidence=IEA] [GO:0007062
"sister chromatid cohesion" evidence=IEA] [GO:0030496 "midbody"
evidence=IEA] InterPro:IPR006554 InterPro:IPR006555
InterPro:IPR010614 InterPro:IPR014013 InterPro:IPR027076
Pfam:PF06733 Pfam:PF13307 PROSITE:PS51193 SMART:SM00488
SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0003677
GO:GO:0000790 GO:GO:0004003 GO:GO:0030496 GO:GO:0000922
PANTHER:PTHR11472:SF5 TIGRFAMs:TIGR00604 OMA:NLGRCVV
GeneTree:ENSGT00530000063199 GO:GO:0007062 EMBL:AADN02006472
EMBL:AADN02006473 IPI:IPI00575083 IntAct:F1NN99
Ensembl:ENSGALT00000021158 Uniprot:F1NN99
Length = 908
Score = 597 (215.2 bits), Expect = 3.0e-79, Sum P(3) = 3.0e-79
Identities = 158/429 (36%), Positives = 238/429 (55%)
Query: 219 VLKVYFCSRTHSQLSQFIKELRKTVFANEIKVVCLGSRKNFCINEEVLRLGNSTHINERC 278
V K+Y+CSRTHSQLSQF+ E++K+ F + ++V LGSR+N C+NEEV RLG IN+RC
Sbjct: 227 VTKIYYCSRTHSQLSQFVHEVQKSPFGKDTRLVSLGSRQNLCVNEEVRRLGALQLINDRC 286
Query: 279 LELQXXXXXXXXXXXXLGAEGKVRRTKAFSGCPVLRSHKLQKGFRNEISQQGALDIEDLV 338
E+Q EGK RR + CP S++ + R+E+ + DIE LV
Sbjct: 287 TEMQKNKHEKKSDAE---VEGKKRRVSR-TVCPFY-SYEQMQFLRDEVLVE-VKDIEQLV 340
Query: 339 HLGRHMRTCPYYGSRSMVPTADLVVLPYQSLLSKSARESLGLNLKNNIVIIDEAHNLADS 398
LG+ + CPYYGSR +P A LVVLPYQ LL ++ R + G+ LK+ +VIIDEAHNL D+
Sbjct: 341 TLGKETKACPYYGSRYAIPAAQLVVLPYQMLLHEATRSAAGIILKDQVVIIDEAHNLIDT 400
Query: 399 LINMYNAKITLSQLENVHSHLEKYFGRFCSLLGPGNRRYIQTLMVFTRAFLQVLLKEKDE 458
+ +Y+A+++ SQL HS L +Y R+ L N YI+ ++ F+ +L ++
Sbjct: 401 ITCIYSAEVSGSQLCCAHSQLLQYMERYRKRLKAKNLMYIKQILYLLERFVVMLGGNVNQ 460
Query: 459 NDVRQD-SENSTGAKHAFDSSVAINEFLFSLNIDNINLVKLLKYIKESNIIHKVSG---- 513
N Q S+ T K +IN+FLF IDNINL K+ +Y ++S I K+ G
Sbjct: 461 NPSCQVVSQTGTELK-------SINDFLFQSQIDNINLFKVQRYCEKSLISRKLFGFVER 513
Query: 514 YGD------------KAASLQKGSVLKDGGENYEEGSILSG-FQSLVDMLIS---LTNND 557
YG+ K A LQ + G +Y+EG + S ++ D L + L + +
Sbjct: 514 YGNPAPVVKTNKENQKLAGLQNFLMTLQQG-SYKEGPLQSPPVEADSDQLRAASPLMHIE 572
Query: 558 GDGRIIISK---ARPISSXXXXXXXXYLKYVMLTGEKVFSEIVEQAHAVILAGGTLQPIE 614
G + + R I + LK+++L F+++V++ AVI+AGGT+QP+
Sbjct: 573 GFLSALTNANEDGRVILNRQGTIGQSSLKFLLLNPAVHFAKVVKECRAVIIAGGTMQPVA 632
Query: 615 ETRERLFPW 623
+ RE+L +
Sbjct: 633 DFREQLLSY 641
Score = 543 (196.2 bits), Expect = 6.9e-70, Sum P(3) = 6.9e-70
Identities = 123/330 (37%), Positives = 192/330 (58%)
Query: 502 IKESNIIHKVSGYGDKAASLQKGSVLKDG---GENYEEGS----ILSGFQSLVDMLISLT 554
+K + K++G + +LQ+GS K+G E S S + L +LT
Sbjct: 521 VKTNKENQKLAGLQNFLMTLQQGSY-KEGPLQSPPVEADSDQLRAASPLMHIEGFLSALT 579
Query: 555 NNDGDGRIIISKARPISSXXXXXXXXYLKYVMLTGEKVFSEIVEQAHAVILAGGTLQPIE 614
N + DGR+I+++ I LK+++L F+++V++ AVI+AGGT+QP+
Sbjct: 580 NANEDGRVILNRQGTIGQSS-------LKFLLLNPAVHFAKVVKECRAVIIAGGTMQPVA 632
Query: 615 ETRERLFPW--LSPNKFHFFSCSHIVPPESILPVALSCGPTGKXXXXXXXXXXXXAMIEE 672
+ RE+L + + P + FSC H++PPE+ILP+ L GP+ + M++E
Sbjct: 633 DFREQLLSYAGVDPARIVEFSCGHVIPPENILPIILCSGPSNQQLEFTYQTRDLPQMMDE 692
Query: 673 LGLLLCNLVSVVPEGIIVFFPSFEYVERVYGAWKSLGILDRIMKKKHVFREPRGNTHVES 732
G +LCNL +VVP G++ FFPS++Y ++VY W+ G+L R+ KK +F+EP+ VE
Sbjct: 693 TGRILCNLCNVVPGGVVCFFPSYDYEKQVYAHWEKTGLLTRLATKKKIFQEPKKANQVEQ 752
Query: 733 VLKEYQKTIDTLSSRPKEDSTPLNGAMLLAVVGGKISEGINFSDGMGRCIVMVGLPYPSP 792
VL EY K I R + + GA+LL+VVGGK+SEGINFSD +GRC++MVG+PYP+
Sbjct: 753 VLAEYAKCI----KRCGQAGGQMTGALLLSVVGGKMSEGINFSDDLGRCVIMVGMPYPNI 808
Query: 793 SNIELLERIKHIEGLGDTNSKTLNTSASDA 822
+ EL E++ ++ KT+ SAS A
Sbjct: 809 KSPELQEKMTWLD-------KTMPRSASQA 831
Score = 160 (61.4 bits), Expect = 3.0e-79, Sum P(3) = 3.0e-79
Identities = 37/75 (49%), Positives = 48/75 (64%)
Query: 847 ENLCMKAVNQSIGRAIRHINDHAAILLVDLRYASESSKRSCSHPANKLPRWIKDRLVSST 906
ENLCMKAVNQSIGRAIRH D+A+ILL+D RYA + NKLP+WI++R +
Sbjct: 838 ENLCMKAVNQSIGRAIRHQKDYASILLLDHRYARPAI-------LNKLPQWIRER-IQVK 889
Query: 907 NNYGEVHRLLHQFFK 921
+G L +F +
Sbjct: 890 PAFGSAFAELRKFHR 904
Score = 110 (43.8 bits), Expect = 3.0e-79, Sum P(3) = 3.0e-79
Identities = 45/152 (29%), Positives = 67/152 (44%)
Query: 20 YSIQTDFMKALYCSLENGGVSML---ESPTGT-GKTLSIICSALQWVVDXXXXXXXXXXY 75
Y IQ FM ALY +LE G V + E P G GK+LS+IC AL W+ D
Sbjct: 20 YRIQEQFMAALYAALEAGVVICVCVEEDPHGPRGKSLSLICGALSWLQDFEKKKQQEEAR 79
Query: 76 ----ETMIKSDHSFTNNGD--C-SSND---EPDWMRNFVVNRDFQAEDAKIKKKKNGCGL 125
E + + +G C +S D EPDW+ FV ++ Q ++K+++
Sbjct: 80 LLAPEGSGQEEKQPLASGGPACPNSRDASGEPDWVTAFVQKKEEQDLVHRLKEEQI---- 135
Query: 126 GKTGERKHREISTDTFSHSMEKDKCFTKKECE 157
RK RE + H+++ +K E
Sbjct: 136 ----RRKKREERLEKIRHNVQLKYAAKRKRSE 163
>SGD|S000005929 [details] [associations]
symbol:CHL1 "Probable DNA helicase" species:4932
"Saccharomyces cerevisiae" [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0007059 "chromosome segregation"
evidence=IDA] [GO:0003678 "DNA helicase activity" evidence=ISS;IMP]
[GO:0006270 "DNA replication initiation" evidence=IMP] [GO:0007064
"mitotic sister chromatid cohesion" evidence=IGI;IMP;IPI]
[GO:0032508 "DNA duplex unwinding" evidence=IEA] [GO:0016817
"hydrolase activity, acting on acid anhydrides" evidence=IEA]
[GO:0036297 "interstrand cross-link repair" evidence=IGI]
[GO:0045910 "negative regulation of DNA recombination"
evidence=IGI;IMP] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0016818 "hydrolase activity, acting on acid anhydrides, in
phosphorus-containing anhydrides" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0006139
"nucleobase-containing compound metabolic process" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004003 "ATP-dependent
DNA helicase activity" evidence=IEA] [GO:0007535 "donor selection"
evidence=IGI;IMP] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0007049 "cell
cycle" evidence=IEA] InterPro:IPR002464 InterPro:IPR006554
InterPro:IPR006555 InterPro:IPR010614 InterPro:IPR014013
InterPro:IPR027076 Pfam:PF06733 Pfam:PF13307 PROSITE:PS00690
PROSITE:PS51193 SMART:SM00488 SMART:SM00491 SGD:S000005929
INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0006270 EMBL:Z71255 EMBL:BK006949 GO:GO:0004003 EMBL:Z48483
EMBL:U33335 GO:GO:0003678 GO:GO:0007064 GO:GO:0045910
eggNOG:COG1199 KO:K11273 PANTHER:PTHR11472:SF5 TIGRFAMs:TIGR00604
HOGENOM:HOG000241266 OMA:NLGRCVV OrthoDB:EOG408RH6 EMBL:X56584
PIR:S12499 RefSeq:NP_015317.1 ProteinModelPortal:P22516 SMR:P22516
DIP:DIP-4044N IntAct:P22516 MINT:MINT-526050 STRING:P22516
PaxDb:P22516 PeptideAtlas:P22516 EnsemblFungi:YPL008W GeneID:856099
KEGG:sce:YPL008W CYGD:YPL008w GeneTree:ENSGT00530000063199
NextBio:981143 Genevestigator:P22516 GermOnline:YPL008W
GO:GO:0007535 GO:GO:0036297 Uniprot:P22516
Length = 861
Score = 368 (134.6 bits), Expect = 1.2e-78, Sum P(4) = 1.2e-78
Identities = 108/354 (30%), Positives = 176/354 (49%)
Query: 220 LKVYFCSRTHSQLSQFIKELRKTVFANEIKVVCLGSRKNFCINEEVLRLGNSTHINERCL 279
+K+Y+ SRT+SQL QF +LR F + + + + L IN + +
Sbjct: 231 VKIYYASRTYSQLGQFTSQLRLPSFPSSFRDKVPDEKVKYL----PLASKKQLCINPKVM 286
Query: 280 ELQXXXXXXXXXXXXLGA-EGKV--RRTKAFSGCPVLRSHKLQKGFRNEISQQGALDIED 336
+ + + EG + + T + CP + L+ +EI DIED
Sbjct: 287 KWKTLEAINDACADLRHSKEGCIFYQNTNEWRHCPDTLA--LRDMIFSEIQ-----DIED 339
Query: 337 LVHLGRHMRTCPYYGSRSMVPTADLVVLPYQSLLSKSARESLGLNLKNNIVIIDEAHNLA 396
LV LG+ + CPYY SR +P A++V LPYQ LLS+S R SL +NL+N+IVIIDEAHNL
Sbjct: 340 LVPLGKSLGICPYYASREALPIAEVVTLPYQYLLSESTRSSLQINLENSIVIIDEAHNLI 399
Query: 397 DSLINMYNAKITLSQLENVHSHLEKYFGRFCSLLGPGNRRYIQTLMVFTRAFLQVLLKEK 456
+++ ++Y+++I+L L+N H + YF +F S L PGNR + L +Q ++K
Sbjct: 400 ETINSIYSSQISLEDLKNCHKGIVTYFNKFKSRLNPGNRVNLLKLNSLLMTLIQFIVKNF 459
Query: 457 DENDVRQDSENSTGAKHAFDSSVAINEFLFSLNIDNINLVKLLKYIKESNIIHKVSGYG- 515
+ + Q+ + N+ NID +N+ KLL+YIK S I +K+ Y
Sbjct: 460 KK--IGQEIDP--------------NDMFTGSNIDTLNIHKLLRYIKVSKIAYKIDTYNQ 503
Query: 516 ---DKAASLQKGSVLKDGGENYEEGSILSGFQSLVDMLISLTNNDGDGRIIISK 566
++ +S + + + ++ +L F+ + L LTN +G+ K
Sbjct: 504 ALKEEESSKNENPIKETHKKSVSSQPLL--FK-VSQFLYCLTNLTSEGQFFFEK 554
Score = 287 (106.1 bits), Expect = 1.2e-78, Sum P(4) = 1.2e-78
Identities = 71/225 (31%), Positives = 114/225 (50%)
Query: 582 LKYVMLTGEKVFSEIVEQAHAVILAGGTLQPIEETRERLFPWLSPNKFHFFSCSHIVPPE 641
+KY++L K F I+ QA V+LAGGT++P+ E L P + SC+H++P E
Sbjct: 558 IKYMLLEPSKPFESILNQAKCVVLAGGTMEPMSEFLSNLLPEVPSEDITTLSCNHVIPKE 617
Query: 642 SILPVALSCGPTGKXXXXXXXXXXXXAMIEELGLLLCNLVSVVPE--GIIVFFPSFEYVE 699
+ L ++ P + + L +L VP+ GI+ FFPS++Y+
Sbjct: 618 N-LQTYITNQP--ELEFTFEKRMSPSLVNNHLFQFFVDLSKAVPKKGGIVAFFPSYQYLA 674
Query: 700 RVYGAWKSLGILDRIMKKKHVFREPRGNTHVESVLKEYQKTIDTLSSRPKEDSTPLNGAM 759
V WK + + +F E + + +L Y ++ R G++
Sbjct: 675 HVIQCWKQNDRFATLNNVRKIFYEAKDG---DDILSGYSDSV--AEGR---------GSL 720
Query: 760 LLAVVGGKISEGINFSDGMGRCIVMVGLPYPSPSNIELLERIKHI 804
LLA+VGGK+SEGINF D + R +VMVGLP+P+ + EL+ + KH+
Sbjct: 721 LLAIVGGKLSEGINFQDDLCRAVVMVGLPFPNIFSGELIVKRKHL 765
Score = 163 (62.4 bits), Expect = 1.2e-78, Sum P(4) = 1.2e-78
Identities = 36/80 (45%), Positives = 51/80 (63%)
Query: 843 KEYYENLCMKAVNQSIGRAIRHINDHAAILLVDLRYASESSKRSCSHPANKLPRWIKDRL 902
KE+ EN+CMKAVNQS+GRAIRH ND+A I L+D+RY + ++ KL RW++D
Sbjct: 784 KEFMENICMKAVNQSVGRAIRHANDYANIYLLDVRYNRPNFRK-------KLSRWVQD-- 834
Query: 903 VSSTNNYGEVHRLLHQFFKF 922
S N+ H+++ KF
Sbjct: 835 --SINSEHTTHQVISSTRKF 852
Score = 147 (56.8 bits), Expect = 1.2e-78, Sum P(4) = 1.2e-78
Identities = 33/82 (40%), Positives = 47/82 (57%)
Query: 20 YSIQTDFMKALYCSLENGG-VSMLESPTGTGKTLSIICSALQWVVDXXXXXXXXXXYETM 78
Y IQ M+ +Y L G +++LESPTGTGKTLS+IC+ + W+ ET
Sbjct: 17 YDIQVQLMETVYRVLSEGKKIAILESPTGTGKTLSLICATMTWL--RMNKADIFTRMETN 74
Query: 79 IKSDHSFTNNGDCSSNDEPDWM 100
IK++ + N S+DEPDW+
Sbjct: 75 IKTNEDDSEN---LSDDEPDWV 93
>WB|WBGene00010839 [details] [associations]
symbol:chl-1 species:6239 "Caenorhabditis elegans"
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=IEA]
[GO:0016818 "hydrolase activity, acting on acid anhydrides, in
phosphorus-containing anhydrides" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006139 "nucleobase-containing compound metabolic
process" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] InterPro:IPR006554 InterPro:IPR006555
InterPro:IPR010614 InterPro:IPR014013 InterPro:IPR027076
Pfam:PF06733 Pfam:PF13307 PROSITE:PS51193 SMART:SM00488
SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0005634
GO:GO:0009792 GO:GO:0003677 GO:GO:0004003 eggNOG:COG1199
PANTHER:PTHR11472:SF5 TIGRFAMs:TIGR00604 HOGENOM:HOG000241266
OMA:NLGRCVV GeneTree:ENSGT00530000063199 EMBL:Z49128
RefSeq:NP_499295.2 ProteinModelPortal:Q21489 SMR:Q21489
STRING:Q21489 PaxDb:Q21489 EnsemblMetazoa:M03C11.2 GeneID:176457
KEGG:cel:CELE_M03C11.2 UCSC:M03C11.2 CTD:176457 WormBase:M03C11.2
InParanoid:Q21489 NextBio:892664 Uniprot:Q21489
Length = 830
Score = 500 (181.1 bits), Expect = 9.0e-66, Sum P(3) = 9.0e-66
Identities = 148/520 (28%), Positives = 241/520 (46%)
Query: 220 LKVYFCSRTHSQLSQFIKELRKTVFANEIKVVCLGSRKNFCINEEVLRLGNSTHINERCL 279
LK+++ SRTHSQL Q +EL KT F I V C SR C+NEEV +L + INE+C+
Sbjct: 184 LKIFYASRTHSQLEQLAEELAKTRFQPRI-VTC-ASRGTLCVNEEVKKLKLNHLINEKCM 241
Query: 280 ELQXXXXXXXXXXXXLGAEGKVRRTKAFS-GCPVLRSHKLQKGFRNEISQQGALDIEDLV 338
EL+ L +G ++TK + C S +++ +S + +E +
Sbjct: 242 ELRKNGMSEKEKVQKL-EKGTTKKTKTCATSCEFYNSTQIEDVVNGVLSNKLKSTLE-VS 299
Query: 339 HLGRHMRTCPYYGSRSMVPTADLVVLPYQSLLSKSARESLGLNLKNNIVIIDEAHNLADS 398
G+ CPY+ +R VP LV+LPYQ LL R++ G+ LK+N++++DEAHN+ ++
Sbjct: 300 KQGKLSNGCPYFATRKSVPQCQLVLLPYQVLLHDGTRKAWGIELKDNVIVLDEAHNVLNT 359
Query: 399 LINMYNAKITLSQLENVHSHLEKYFGRFCSLLGPGNRRYIQTLMVFTRAFLQVLLKEKDE 458
+ ++Y+A+I+ L + +Y + L N Y++ L T L + L + +
Sbjct: 360 ISSLYSAEISTKSLTLALRLIREYNAHYKLKLLAHNLLYMKQLESLTSKML-IFLNSQSK 418
Query: 459 NDVRQDSENSTGAKHAFDSSVA-INEFLFSLNIDNINLVKLLK--YIKESNIIHKVSGYG 515
DV T A+ A + ++ IN F + ++ +L K Y++ K
Sbjct: 419 EDVM------TMAQLARNLNILEINLFKLAEYMEKTDLCKKFHGFYMRLQKEEIKKENEK 472
Query: 516 DKAASLQKGSVLKDGGENYEEGS------ILSGFQSLVDMLISLTNNDGDGRIIISKARP 569
K +QK K+ E + S SL + +LTN DGRII+ K+
Sbjct: 473 PKLTGIQKLMAAKEAEPEPEAEPLPPPKPVPSPLFSLKSFIDALTNKCEDGRIIVEKS-- 530
Query: 570 ISSXXXXXXXXYLKYVMLTGEKVFSEIVEQAHAVILAGGTLQPIEETRERLFPW-LSPNK 628
++++L SE+V A A IL GGT++P + E L + +
Sbjct: 531 -------ATEAKFRFMLLNPADRLSEVVTSARATILVGGTMEPAQLLVETLSRGSIGADS 583
Query: 629 FHFFSCSHIVPPESILPVALSCGPTGKXXXXXXXXXXXXAMIEELGLLLCNLVSVVPEGI 688
FSC H++ +L V + GK + L + L+ +P G+
Sbjct: 584 IRRFSCCHVIDDSQLLAVTVERTVDGKPFQLTYQTRGADTTLRSLATSIQALIPHIPNGV 643
Query: 689 IVFFPSFEYVERVYGAWKSLGILDRIMKKKHVFREPRGNT 728
++F PS++++ K GIL RI +KK VF E R T
Sbjct: 644 VIFVPSYDFLFNFQKKMKEFGILKRIEEKKAVFTESRQPT 683
Score = 314 (115.6 bits), Expect = 2.8e-43, Sum P(4) = 2.8e-43
Identities = 96/334 (28%), Positives = 153/334 (45%)
Query: 487 SLNIDNINLVKLLKYIKESNIIHKVSGY--------------GDKAASLQKGSVLKDGGE 532
+LNI INL KL +Y++++++ K G+ K +QK K+ E
Sbjct: 430 NLNILEINLFKLAEYMEKTDLCKKFHGFYMRLQKEEIKKENEKPKLTGIQKLMAAKEA-E 488
Query: 533 NYEEGSILSGFQSLVDMLISLTNNDGDGRIIISKARPISSXXXXXXXXYLKYVMLTGEKV 592
E L + + L SL + R I ++++L
Sbjct: 489 PEPEAEPLPPPKPVPSPLFSLKSFIDALTNKCEDGRIIVEKSATEAK--FRFMLLNPADR 546
Query: 593 FSEIVEQAHAVILAGGTLQPIEETRERLFPW-LSPNKFHFFSCSHIVPPESILPVALSCG 651
SE+V A A IL GGT++P + E L + + FSC H++ +L V +
Sbjct: 547 LSEVVTSARATILVGGTMEPAQLLVETLSRGSIGADSIRRFSCCHVIDDSQLLAVTVERT 606
Query: 652 PTGKXXXXXXXXXXXXAMIEELGLLLCNLVSVVPEGIIVFFPSFEYVERVYGAWKSLGIL 711
GK + L + L+ +P G+++F PS++++ K GIL
Sbjct: 607 VDGKPFQLTYQTRGADTTLRSLATSIQALIPHIPNGVVIFVPSYDFLFNFQKKMKEFGIL 666
Query: 712 DRIMKKKHVFREPRGNTHVESVLKEYQKTIDTLSSRPKEDSTPLNGAMLLAVVGGKISEG 771
RI +KK VF E R T V + + T S+ GA+L AVVGGK+SEG
Sbjct: 667 KRIEEKKAVFTESRQPT--SDVWDRFSRAAKT--SK---------GAILFAVVGGKMSEG 713
Query: 772 INFSDGMGRCIVMVGLPYPSPSNIELLERIKHIE 805
INF D +GR ++++GLPYP+ +++EL ER+K ++
Sbjct: 714 INFCDELGRAVIVIGLPYPNKTSVELRERMKFLD 747
Score = 171 (65.3 bits), Expect = 9.0e-66, Sum P(3) = 9.0e-66
Identities = 40/85 (47%), Positives = 50/85 (58%)
Query: 842 GKEYYENLCMKAVNQSIGRAIRHINDHAAILLVDLRYASESSKRSCSHPANKLPRWIKDR 901
G YE+LCM AVNQ+IGRAIRH D+AA+ L D RYA ES++R KL WI DR
Sbjct: 754 GNLLYESLCMHAVNQAIGRAIRHRRDYAAVYLFDDRYAKESTRR-------KLSTWIGDR 806
Query: 902 LVSSTNNYGEVHRLLHQFFKFNKNR 926
+GE+ R FF+ N +
Sbjct: 807 TQVKLG-FGEIIRKTRSFFEANSKK 830
Score = 108 (43.1 bits), Expect = 9.0e-66, Sum P(3) = 9.0e-66
Identities = 18/43 (41%), Positives = 29/43 (67%)
Query: 20 YSIQTDFMKALYCSLENGGVSMLESPTGTGKTLSIICSALQWV 62
Y IQ + M+ + +E + + ESPTGTGK+LS++CS + W+
Sbjct: 11 YDIQLNLMREIRQCIEQRKIGIFESPTGTGKSLSVLCSTMTWL 53
Score = 37 (18.1 bits), Expect = 2.8e-43, Sum P(4) = 2.8e-43
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 389 IDEAHNLADSLINMYNAKITLSQLENVHSHLEK 421
+DE + ++ A T SQLE + L K
Sbjct: 173 VDEEEEKPLKCLKIFYASRTHSQLEQLAEELAK 205
>ASPGD|ASPL0000038959 [details] [associations]
symbol:AN10414 species:162425 "Emericella nidulans"
[GO:0006139 "nucleobase-containing compound metabolic process"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] InterPro:IPR006554
InterPro:IPR006555 InterPro:IPR010614 InterPro:IPR014013
InterPro:IPR027076 Pfam:PF06733 Pfam:PF13307 PROSITE:PS51193
SMART:SM00488 SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 EMBL:BN001306 GO:GO:0004003
PANTHER:PTHR11472:SF5 TIGRFAMs:TIGR00604 OMA:NLGRCVV
EnsemblFungi:CADANIAT00009590 Uniprot:C8VHC2
Length = 841
Score = 377 (137.8 bits), Expect = 6.2e-63, Sum P(4) = 6.2e-63
Identities = 99/301 (32%), Positives = 151/301 (50%)
Query: 550 LISLTNNDGDGRIIISKARPISSXXXXXXXXYLKYVMLTGEKVFSEIVEQAHAVILAGGT 609
L+ L N +GR+ +K P L Y++L F EIVE A AVILAGGT
Sbjct: 495 LLPLMNLSSEGRLFFTKT-P--------GDIQLHYMLLDPTNHFREIVEDARAVILAGGT 545
Query: 610 LQPIEETRERLFPWLSPNKFHFFSCSHIVPPESILPVALSCGPTGKXXXXXXXXXXXXAM 669
+ P+ + LF ++ ++ + FS H++P E++ L+ G TG M
Sbjct: 546 MSPMSDYLNHLFSYVPKDRLNTFSYGHVIPSENLTAHTLARGVTGCEFDFTYAGRDAEKM 605
Query: 670 IEELGLLLCNLVSVVPEGIIVFFPSFEYVERVYGAWKSLGILDRIMKKKHVFREPRGNTH 729
I +LG L +P+GI+ FFPS+EY+ RV WK+ + + K+ ++
Sbjct: 606 ILDLGRTFTQLCRAIPDGIVAFFPSYEYLSRVLNIWKNAVVREN---KQTLYETVEKEKQ 662
Query: 730 VESVLKEYQKTIDTLSSRPKEDSTPLNGAMLLAVVGGKISEGINFSDGMGRCIVMVGLPY 789
+ +E + T D L + GA+LL+VVGGK+SEGINFSD +GR +++VGLP+
Sbjct: 663 ILYESRETELTTDDLLNNYANTINKGRGALLLSVVGGKLSEGINFSDKLGRGVLIVGLPF 722
Query: 790 PSPSNIELLERIKHIE-------GLGDTNSKTLNTSAS--DAYYNGDAQAGFGILRSCRG 840
P+ + +IK+IE G G S+ L+ A+ D Y N +A + C G
Sbjct: 723 PNIRSPVWQAKIKYIEQKAYRNVGSGSEESRRLSAKAAGRDFYENACMRA----VNQCIG 778
Query: 841 R 841
R
Sbjct: 779 R 779
Score = 285 (105.4 bits), Expect = 3.1e-52, Sum P(4) = 3.1e-52
Identities = 71/172 (41%), Positives = 98/172 (56%)
Query: 735 KEYQKTIDTLSSRPKEDSTPLNGAMLLAVVGGKISEGINFSDGMGRCIVMVGLPYPSPSN 794
+E + T D L + GA+LL+VVGGK+SEGINFSD +GR +++VGLP+P+ +
Sbjct: 668 RETELTTDDLLNNYANTINKGRGALLLSVVGGKLSEGINFSDKLGRGVLIVGLPFPNIRS 727
Query: 795 IELLERIKHIEGLGDTNSKTLNTSASDAYYNGDAQAGFGILRSCRGRGKEYYENLCMKAV 854
+IK+IE AY N + + S + G+++YEN CM+AV
Sbjct: 728 PVWQAKIKYIE--------------QKAYRNVGSGSEESRRLSAKAAGRDFYENACMRAV 773
Query: 855 NQSIGRAIRHINDHAAILLVDLRYASESSKRSCSHPANKLPRWIKDRLVSST 906
NQ IGRAIRH ND+AAI+L+D RY S + KLP WIK LV +
Sbjct: 774 NQCIGRAIRHRNDYAAIVLIDKRYGKTSIEA-------KLPGWIKQSLVKDS 818
Score = 280 (103.6 bits), Expect = 6.2e-63, Sum P(4) = 6.2e-63
Identities = 89/305 (29%), Positives = 143/305 (46%)
Query: 220 LKVYFCSRTHSQLSQFIKELRKTVFANEI-KVVCLGSRKNFCINEEVLRLGNSTHINERC 278
+K+++CSRTHSQL QF ELR+ + + + + G E + + + N C
Sbjct: 195 IKIFYCSRTHSQLMQFASELRRVTMPSTLPESLRQGLTDEEEQGERIKHISLGSRKN-LC 253
Query: 279 LELQXXXXXXXXXXXXLGAEGKVRRTKAFSGCPVLRSHKLQK---GFRNEISQQGALDIE 335
+ + E + T A C L + + + FR+ + DIE
Sbjct: 254 INSRVAALGNPTAINERCLELQQPNTPAPLRCSYLPTEEDEAKTLSFRDH-ALATVKDIE 312
Query: 336 DLVHLGRHMRTCPYYGSRSMVPTADLVVLPYQSLLSKSARESLGLNLKNNIVIIDEAHNL 395
DL LG+ + CPYY SR +V ++ +SAR++L L++K ++VIIDEAHNL
Sbjct: 313 DLGKLGKKLGLCPYYASRGVVSHSE-----------RSARDALNLSIKGHVVIIDEAHNL 361
Query: 396 ADSLINMYNAKITLSQLENVHSHLEKYFGRFCSLLGPGNRRYIQTLMVFTRAFLQVLLKE 455
D++ N+++ +TLSQL L Y +F + L NR YI + ++++
Sbjct: 362 MDAISNIHSVTVTLSQLRTSIFQLTTYARKFKTRLKGKNRNYIAQV-------IRLISSI 414
Query: 456 KDENDVRQDSENSTGAKHAFDSSVAINEFLFSLNIDNINLVKLLKYIKESNIIHKVSGYG 515
D D+ K A + SV ++ + D IN KL +Y+ ES + KV GY
Sbjct: 415 ADHLQSLIDN------KQASEGSVLSSDLMAGKGADQINPYKLCRYLNESKLARKVDGYI 468
Query: 516 DKAAS 520
D + S
Sbjct: 469 DFSQS 473
Score = 100 (40.3 bits), Expect = 6.2e-63, Sum P(4) = 6.2e-63
Identities = 22/43 (51%), Positives = 27/43 (62%)
Query: 20 YSIQTDFMKALYCSLENGGVSMLESPTGTGKTLSII-CSALQW 61
Y IQ FM++LY LE G V++ ESPTG+G L II S W
Sbjct: 24 YDIQVRFMQSLYECLEEGKVAIFESPTGSGPRLQIIELSCTDW 66
Score = 55 (24.4 bits), Expect = 6.2e-63, Sum P(4) = 6.2e-63
Identities = 25/94 (26%), Positives = 43/94 (45%)
Query: 85 FTNNGDCSSNDEPDWMRNFV---VNR-------DFQAEDAKIKKKKNG--CGLGKT-GER 131
+T N D +DEP+WM F +R +F++ A+IK+++ L + G R
Sbjct: 66 WTRNRD---DDEPEWMVEFAKREASRAVTEKRIEFESRLARIKREEEQQRAALESSEGSR 122
Query: 132 KHREISTDTFSHSMEKDKCFTKKECENLQSINDQ 165
K + +S + E D F ++ S ND+
Sbjct: 123 KRQRVSVVSRDQDTEDDDQFA---LDDYDSENDE 153
>CGD|CAL0004313 [details] [associations]
symbol:orf19.2000 species:5476 "Candida albicans" [GO:0003678
"DNA helicase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0007535
"donor selection" evidence=IEA] [GO:0045910 "negative regulation of
DNA recombination" evidence=IEA] [GO:0006270 "DNA replication
initiation" evidence=IEA] [GO:0007064 "mitotic sister chromatid
cohesion" evidence=IEA] InterPro:IPR002464 InterPro:IPR006554
InterPro:IPR006555 InterPro:IPR010614 InterPro:IPR014013
InterPro:IPR027076 Pfam:PF06733 Pfam:PF13307 PROSITE:PS00690
PROSITE:PS51193 SMART:SM00488 SMART:SM00491 INTERPRO:IPR013020
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0007049
GO:GO:0004003 EMBL:AACQ01000031 EMBL:AACQ01000030
RefSeq:XP_719450.1 RefSeq:XP_719578.1 ProteinModelPortal:Q5AD67
STRING:Q5AD67 GeneID:3638692 GeneID:3638794 KEGG:cal:CaO19.2000
KEGG:cal:CaO19.9551 eggNOG:COG1199 KO:K11273 PANTHER:PTHR11472:SF5
TIGRFAMs:TIGR00604 Uniprot:Q5AD67
Length = 842
Score = 419 (152.6 bits), Expect = 5.0e-61, Sum P(3) = 5.0e-61
Identities = 115/363 (31%), Positives = 180/363 (49%)
Query: 467 NSTGAKHAFDSSVAINEFLFSLNIDNINLVKLLKYIKESNIIHKVSGYGDKAASLQKGSV 526
N+ K V I + D +N+ KL +++ +S I +K+ Y +K ++ +
Sbjct: 422 NTNSEKVKSGDEVQIQDIFKDSTGDLVNIHKLDQFLTKSKIAYKIESYIEKT-EMETDNG 480
Query: 527 LKDGGENYEEGSILSGFQS--LVDMLISLTNNDGDGRIIISKARPISSXXXXXXXXYLKY 584
K G GS S S L+ +I + +SK L Y
Sbjct: 481 EKKGRITNSGGSSSSSSSSNPLLFTIIKFLRTLTN----LSKEGKFFWDNENGTIS-LNY 535
Query: 585 VMLTGEKVFSEIVEQAHAVILAGGTLQPIEETRERLFPWLSPNKFHFFSCSHIVPPES-- 642
++L VF EIV+QA V+L GGT++P+ + + LFP + NK + F+C H++P E+
Sbjct: 536 MLLDPSAVFKEIVDQAKCVLLCGGTMEPMSDYMDYLFPSVPTNKINTFACGHVIPKENLQ 595
Query: 643 ILPVALSCGPTGKXXXXXXXXXXXXAMIEELGLLLCNLVSVVPEGIIVFFPSFEYVERVY 702
+ P++ T M LG L + VP G+++FFPS++Y+++V
Sbjct: 596 VFPIS-QWNDTNFEFSYQKRNDSKQLMA--LGEFLIEITKRVPYGVVIFFPSYKYLDQVL 652
Query: 703 GAWKSLGILDRIMKKKHVFREPRGNTHVESVLKEYQKTIDTLSSRPKEDSTPLNGAMLLA 762
W+ IL I +K +FREP+ ++VE VL EY I T R GA+L +
Sbjct: 653 QFWRDTKILTSIESEKTIFREPKDPSNVEKVLNEYGYLIQT--ER--------KGAILFS 702
Query: 763 VVGGKISEGINFSDGMGRCIVMVGLPYPSPSNIELLERIKHIEGLGDTNSKTLNTSASDA 822
VVGGK+SEGINFSD + R ++MVGLPYP+ + E++ + K+IE +N T T A +
Sbjct: 703 VVGGKMSEGINFSDDLARAVIMVGLPYPNAYSGEMVTKRKYIETSELSNGGT-TTDAKEK 761
Query: 823 YYN 825
N
Sbjct: 762 SRN 764
Score = 325 (119.5 bits), Expect = 3.5e-50, Sum P(3) = 3.5e-50
Identities = 102/352 (28%), Positives = 163/352 (46%)
Query: 220 LKVYFCSRTHSQLSQFIKELRKTVFANEIKVVCLGSRKNFCINEEVLRLGNSTH--INER 277
+K++F SRTHSQL+QF +LR T F + L R + + LG+ INE+
Sbjct: 201 IKIFFSSRTHSQLNQFSSQLRLTNFQASFED--LEERTKY------IPLGSRKQLCINEK 252
Query: 278 CLELQXXXXXXXXXXXXLGAEGKVRRTKAFSGCPVLRSHKLQKGFRNE---ISQQGALDI 334
++ L + R T +GC L + + E +S DI
Sbjct: 253 ---VRSKGNDQSVNDACLDLQ---RET---NGCQYLPKNYMMSSVTKEFADLSLAKIRDI 303
Query: 335 EDLVHLGRHMRTCPYYGSRSMVPTADLVVLPYQSLLSKSARESLGLNLKNNIVIIDEAHN 394
EDL LG + CPYY R + +++ LPYQ + + R+ L L++K++I+IIDEAHN
Sbjct: 304 EDLNELGIELNICPYYSVRKGIEMTEIISLPYQMIFQDTTRKILNLDIKDSIIIIDEAHN 363
Query: 395 LADSLINMYNAKITLSQLENVHSHLEKYFGRFCSLLGPGNRRYIQTLMVFTRAFLQVLLK 454
+ D + +MY+ KIT QL V L+ Y +F L GNR + L+ Q+LLK
Sbjct: 364 IIDVITSMYSIKITSDQLNKVIKSLKIYLNKFLKRLNSGNRINLMKLI----KICQILLK 419
Query: 455 EKDENDVRQDSENSTGAKHAFDSSVAINEFLFSLNIDNINLVKLLKYIKESNIIHKVSGY 514
+ N + S + + F S D +N+ KL +++ +S I +K+ Y
Sbjct: 420 FLNTNSEKVKSGDEVQIQDIFKDSTG----------DLVNIHKLDQFLTKSKIAYKIESY 469
Query: 515 GDKAA-----SLQKGSVLKDGGENYEEGSILSGFQSLVDMLISLTNNDGDGR 561
+K +KG + GG + S +++ L +LTN +G+
Sbjct: 470 IEKTEMETDNGEKKGRITNSGGSSSSSSSSNPLLFTIIKFLRTLTNLSKEGK 521
Score = 183 (69.5 bits), Expect = 5.0e-61, Sum P(3) = 5.0e-61
Identities = 36/77 (46%), Positives = 54/77 (70%)
Query: 833 GILRSCRGRGKEYYENLCMKAVNQSIGRAIRHINDHAAILLVDLRYASESSKRSCSHPAN 892
G + + + YYENLCM+AVNQSIGR+IRHIND++ I LVD R+++ + N
Sbjct: 753 GTTTDAKEKSRNYYENLCMRAVNQSIGRSIRHINDYSIIYLVDRRFSTPRIQ-------N 805
Query: 893 KLPRWIKDRL-VSSTNN 908
KL +W+K+R+ +++TNN
Sbjct: 806 KLSQWVKERISITTTNN 822
Score = 146 (56.5 bits), Expect = 5.0e-61, Sum P(3) = 5.0e-61
Identities = 35/93 (37%), Positives = 52/93 (55%)
Query: 20 YSIQTDFMKALYCSLENG-GVSMLESPTGTGKTLSIICSALQWVVDXXXXXXXXXXYETM 78
Y IQ M A+Y ++ENG + + ESPTGTGKTLSIICS++ W+ ET
Sbjct: 17 YDIQIQLMDAIYNTIENGYKIGLFESPTGTGKTLSIICSSMTWL---RTFKRNNTFLETN 73
Query: 79 IKSDHSFTNNGDCSSNDEPDWMR----NFVVNR 107
+ + + + S DEP+W++ + +VNR
Sbjct: 74 NEVEDVYESE---SEEDEPEWVKKAYQSSIVNR 103
>UNIPROTKB|B4GU19 [details] [associations]
symbol:GL14463 "Regulator of telomere elongation helicase 1
homolog" species:7234 "Drosophila persimilis" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0005524
"ATP binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0010569 "regulation of double-strand break repair via
homologous recombination" evidence=ISS] InterPro:IPR006555
InterPro:IPR010614 InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307
PROSITE:PS00690 PROSITE:PS51193 SMART:SM00491 INTERPRO:IPR013020
GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0006281 GO:GO:0051539 GO:GO:0004003 InterPro:IPR014001
SMART:SM00487 GO:GO:0010569 TIGRFAMs:TIGR00604 KO:K11136
OrthoDB:EOG4S4MX7 EMBL:CH479190 RefSeq:XP_002022098.1
EnsemblMetazoa:FBtr0180078 GeneID:6596883 KEGG:dpe:Dper_GL14463
FlyBase:FBgn0152068 Uniprot:B4GU19
Length = 1009
Score = 261 (96.9 bits), Expect = 5.4e-59, Sum P(5) = 5.4e-59
Identities = 70/231 (30%), Positives = 113/231 (48%)
Query: 599 QAHAVILAGGTLQPIEETRERLFPWLSPNKFHFFSCSHIVPPESILPVALSCGPTGKXXX 658
Q +VIL GTL P++ L P H + HIV + + GP +
Sbjct: 473 QVRSVILTSGTLAPLKPLIAEL---AIPVAQHLEN-PHIVDQSQVYVKIIGTGPDRQQLI 528
Query: 659 XXXXXXXXXAMIEELGLLLCNLVSVVPEGIIVFFPSFEYVERVYGAWKSLGILDRIMKKK 718
I LG + N+ +VP+G++VFFPS+ + + AW++ G+ I KK
Sbjct: 529 SNFKNRDNPKYISSLGQTILNVARIVPDGLLVFFPSYPMLNKCVDAWQASGLWADISCKK 588
Query: 719 HVFREPRGNTHVESVLKEYQKTIDTLSSRPKEDSTPLNGAMLLAVVGGKISEGINFSDGM 778
+F EPRG S ++E+ + I DS GA+ +AV GK+SEG++F+D
Sbjct: 589 PIFVEPRGKDQFTSTMEEFYQAI--------RDS---KGAVFMAVCRGKVSEGLDFADRN 637
Query: 779 GRCIVMVGLPYPSPSNIELLERIKHIEGLGDTNSKTLNTSAS-DAYYNGDA 828
GR +++ GLP+P + +++ + +++E TN N S +YN DA
Sbjct: 638 GRAVIITGLPFPPLKDPKVILKRRYLE----TNRTKENQLLSGQEWYNLDA 684
Score = 176 (67.0 bits), Expect = 5.4e-59, Sum P(5) = 5.4e-59
Identities = 37/96 (38%), Positives = 58/96 (60%)
Query: 332 LDIEDLVHLGRHMRTCPYYGSRSMVPTADLVVLPYQSLLSKSARESLGLNLKNNIVIIDE 391
+DIEDLV +G+ ++ CPYY S+ +V AD+ +PY LL AR++ + L N I+I+DE
Sbjct: 194 MDIEDLVRVGQKLKMCPYYASKELVAQADITFMPYNYLLDPKARKANKIELGNTIIILDE 253
Query: 392 AHNLADSLINMYNAKITLSQ----LENVHSHLEKYF 423
AHN+ + +I S +E+V +H+ K F
Sbjct: 254 AHNIEKICEESASVQIRSSDVAMAIEDV-THIMKVF 288
Score = 137 (53.3 bits), Expect = 5.4e-59, Sum P(5) = 5.4e-59
Identities = 29/58 (50%), Positives = 42/58 (72%)
Query: 219 VLKVYFCSRTHSQLSQFIKELRKTVFANEIKVVCLGSRKNFCINEEVLR-LGNSTHIN 275
V KV + SRTHSQL+Q ++EL++T +AN ++ V LGSR CI+ EV++ GNS +N
Sbjct: 106 VPKVIYASRTHSQLNQAMRELKRTAYAN-MRSVVLGSRDQLCIHPEVMKEQGNSNKVN 162
Score = 135 (52.6 bits), Expect = 5.4e-59, Sum P(5) = 5.4e-59
Identities = 33/82 (40%), Positives = 47/82 (57%)
Query: 842 GKEYYENLCMKAVNQSIGRAIRHINDHAAILLVDLRYASESSKRSCSHPANKLPRWIKDR 901
G+E+Y +AVNQ+IGR IRH ND+ AILL D R+ S +L +WI+
Sbjct: 676 GQEWYNLDATRAVNQAIGRVIRHRNDYGAILLCDSRFQDASQ-------VQQLSKWIRGH 728
Query: 902 LVS--STNNYGEVHRLLHQFFK 921
L + ++ +G + R L QFFK
Sbjct: 729 LGARPQSSPFGPIVRELRQFFK 750
Score = 126 (49.4 bits), Expect = 5.4e-59, Sum P(5) = 5.4e-59
Identities = 21/43 (48%), Positives = 33/43 (76%)
Query: 20 YSIQTDFMKALYCSLENGGVSMLESPTGTGKTLSIICSALQWV 62
Y++Q D+M+ + L +G +LESPTGTGKTLS++C++L W+
Sbjct: 18 YNVQRDYMEKVIICLRDGTNGVLESPTGTGKTLSLLCASLAWI 60
Score = 41 (19.5 bits), Expect = 1.2e-35, Sum P(5) = 1.2e-35
Identities = 15/60 (25%), Positives = 27/60 (45%)
Query: 728 THVESVLKEYQKTIDTLSSRPKEDSTPLNGAMLLAVVGGKISEGINFSDGMGRCIVMVGL 787
T ++ +L E +K ID + D T +++ ++G NF+ G C +V L
Sbjct: 310 TLLKEMLLELEKAIDAVVVDNPTDGTTYPASLMYELLGKA-----NFT--YGNCATIVAL 362
>UNIPROTKB|Q29FS3 [details] [associations]
symbol:GA17940 "Regulator of telomere elongation helicase 1
homolog" species:46245 "Drosophila pseudoobscura pseudoobscura"
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISS]
[GO:0005524 "ATP binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0010569 "regulation of double-strand break repair
via homologous recombination" evidence=ISS] InterPro:IPR006555
InterPro:IPR010614 InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307
PROSITE:PS00690 PROSITE:PS51193 SMART:SM00491 INTERPRO:IPR013020
GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0006281 GO:GO:0051539 GO:GO:0004003 InterPro:IPR014001
SMART:SM00487 GO:GO:0010569 eggNOG:COG1199 TIGRFAMs:TIGR00604
EMBL:CH379065 KO:K11136 OrthoDB:EOG4S4MX7 RefSeq:XP_001354453.2
GeneID:4814338 KEGG:dpo:Dpse_GA17940 FlyBase:FBgn0077949
InParanoid:Q29FS3 Uniprot:Q29FS3
Length = 1009
Score = 261 (96.9 bits), Expect = 5.4e-59, Sum P(5) = 5.4e-59
Identities = 70/231 (30%), Positives = 113/231 (48%)
Query: 599 QAHAVILAGGTLQPIEETRERLFPWLSPNKFHFFSCSHIVPPESILPVALSCGPTGKXXX 658
Q +VIL GTL P++ L P H + HIV + + GP +
Sbjct: 473 QVRSVILTSGTLAPLKPLIAEL---AIPVAQHLEN-PHIVDQSQVYVKIIGTGPDRQQLI 528
Query: 659 XXXXXXXXXAMIEELGLLLCNLVSVVPEGIIVFFPSFEYVERVYGAWKSLGILDRIMKKK 718
I LG + N+ +VP+G++VFFPS+ + + AW++ G+ I KK
Sbjct: 529 SNFKNRDNPKYISSLGQTILNVARIVPDGLLVFFPSYPMLNKCVDAWQASGLWADISCKK 588
Query: 719 HVFREPRGNTHVESVLKEYQKTIDTLSSRPKEDSTPLNGAMLLAVVGGKISEGINFSDGM 778
+F EPRG S ++E+ + I DS GA+ +AV GK+SEG++F+D
Sbjct: 589 PIFVEPRGKDQFTSTMEEFYQAI--------RDS---KGAVFMAVCRGKVSEGLDFADRN 637
Query: 779 GRCIVMVGLPYPSPSNIELLERIKHIEGLGDTNSKTLNTSAS-DAYYNGDA 828
GR +++ GLP+P + +++ + +++E TN N S +YN DA
Sbjct: 638 GRAVIITGLPFPPLKDPKVILKRRYLE----TNRTKENQLLSGQEWYNLDA 684
Score = 176 (67.0 bits), Expect = 5.4e-59, Sum P(5) = 5.4e-59
Identities = 37/96 (38%), Positives = 58/96 (60%)
Query: 332 LDIEDLVHLGRHMRTCPYYGSRSMVPTADLVVLPYQSLLSKSARESLGLNLKNNIVIIDE 391
+DIEDLV +G+ ++ CPYY S+ +V AD+ +PY LL AR++ + L N I+I+DE
Sbjct: 194 MDIEDLVRVGQKLKMCPYYASKELVAQADITFMPYNYLLDPKARKANKIELGNTIIILDE 253
Query: 392 AHNLADSLINMYNAKITLSQ----LENVHSHLEKYF 423
AHN+ + +I S +E+V +H+ K F
Sbjct: 254 AHNIEKICEESASVQIRSSDVAMAIEDV-THIMKVF 288
Score = 137 (53.3 bits), Expect = 5.4e-59, Sum P(5) = 5.4e-59
Identities = 29/58 (50%), Positives = 42/58 (72%)
Query: 219 VLKVYFCSRTHSQLSQFIKELRKTVFANEIKVVCLGSRKNFCINEEVLR-LGNSTHIN 275
V KV + SRTHSQL+Q ++EL++T +AN ++ V LGSR CI+ EV++ GNS +N
Sbjct: 106 VPKVIYASRTHSQLNQAMRELKRTAYAN-MRSVVLGSRDQLCIHPEVMKEQGNSNKVN 162
Score = 135 (52.6 bits), Expect = 5.4e-59, Sum P(5) = 5.4e-59
Identities = 33/82 (40%), Positives = 47/82 (57%)
Query: 842 GKEYYENLCMKAVNQSIGRAIRHINDHAAILLVDLRYASESSKRSCSHPANKLPRWIKDR 901
G+E+Y +AVNQ+IGR IRH ND+ AILL D R+ S +L +WI+
Sbjct: 676 GQEWYNLDATRAVNQAIGRVIRHRNDYGAILLCDSRFQDASQ-------VQQLSKWIRGH 728
Query: 902 LVS--STNNYGEVHRLLHQFFK 921
L + ++ +G + R L QFFK
Sbjct: 729 LGARPQSSPFGPIVRELRQFFK 750
Score = 126 (49.4 bits), Expect = 5.4e-59, Sum P(5) = 5.4e-59
Identities = 21/43 (48%), Positives = 33/43 (76%)
Query: 20 YSIQTDFMKALYCSLENGGVSMLESPTGTGKTLSIICSALQWV 62
Y++Q D+M+ + L +G +LESPTGTGKTLS++C++L W+
Sbjct: 18 YNVQRDYMEKVIICLRDGTNGVLESPTGTGKTLSLLCASLAWI 60
Score = 41 (19.5 bits), Expect = 1.2e-35, Sum P(5) = 1.2e-35
Identities = 15/60 (25%), Positives = 27/60 (45%)
Query: 728 THVESVLKEYQKTIDTLSSRPKEDSTPLNGAMLLAVVGGKISEGINFSDGMGRCIVMVGL 787
T ++ +L E +K ID + D T +++ ++G NF+ G C +V L
Sbjct: 310 TLLKEMLLELEKAIDAVVVDNPTDGTTYPASLMYELLGKA-----NFT--YGNCATIVAL 362
>FB|FBgn0029798 [details] [associations]
symbol:CG4078 species:7227 "Drosophila melanogaster"
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISS]
[GO:0006289 "nucleotide-excision repair" evidence=ISS] [GO:0003677
"DNA binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR006555 InterPro:IPR010614 InterPro:IPR014013
Pfam:PF06733 Pfam:PF13307 PROSITE:PS00690 PROSITE:PS51193
SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0005634
GO:GO:0046872 GO:GO:0003677 EMBL:AE014298 GO:GO:0006281
GO:GO:0051539 GO:GO:0004003 InterPro:IPR014001 SMART:SM00487
GO:GO:0010569 eggNOG:COG1199 TIGRFAMs:TIGR00604
GeneTree:ENSGT00530000063199 KO:K11136 OMA:PFPPLKD
OrthoDB:EOG4S4MX7 EMBL:BT021290 EMBL:EU217688 EMBL:EU217689
EMBL:EU217690 EMBL:EU217691 EMBL:EU217692 EMBL:EU217693
EMBL:EU217694 EMBL:EU217695 EMBL:EU217696 EMBL:EU217697
EMBL:EU217698 EMBL:EU217699 RefSeq:NP_572254.1 UniGene:Dm.11709
ProteinModelPortal:Q9W484 SMR:Q9W484 IntAct:Q9W484
MINT:MINT-4080348 PaxDb:Q9W484 PRIDE:Q9W484
EnsemblMetazoa:FBtr0070807 EnsemblMetazoa:FBtr0332398 GeneID:31497
KEGG:dme:Dmel_CG4078 UCSC:CG4078-RA FlyBase:FBgn0029798
InParanoid:Q9W484 PhylomeDB:Q9W484 GenomeRNAi:31497 NextBio:773915
Bgee:Q9W484 Uniprot:Q9W484
Length = 985
Score = 256 (95.2 bits), Expect = 4.3e-58, Sum P(5) = 4.3e-58
Identities = 66/230 (28%), Positives = 112/230 (48%)
Query: 599 QAHAVILAGGTLQPIEETRERLFPWLSPNKFHFFSCSHIVPPESILPVALSCGPTGKXXX 658
Q +VIL GTL P++ L P H + HIV + + GP +
Sbjct: 472 QVRSVILTSGTLAPLKPLIAEL---AIPVAQHLEN-PHIVDQSQVYVKIIGTGPDRQQLI 527
Query: 659 XXXXXXXXXAMIEELGLLLCNLVSVVPEGIIVFFPSFEYVERVYGAWKSLGILDRIMKKK 718
I LG + N+ +VP+G++VFFPS+ + + AW++ G+ I KK
Sbjct: 528 SNYANRDNPKYISSLGQTILNVARIVPDGLLVFFPSYPMLNKCVDAWQASGLWADISCKK 587
Query: 719 HVFREPRGNTHVESVLKEYQKTIDTLSSRPKEDSTPLNGAMLLAVVGGKISEGINFSDGM 778
+F EPR S ++E+ + I DS GA+ +AV GK+SEG++F+D
Sbjct: 588 PIFLEPRSKDQFTSTMEEFYQAI--------RDS---KGAVFMAVCRGKVSEGLDFADRN 636
Query: 779 GRCIVMVGLPYPSPSNIELLERIKHIEGLGDTNSKTLNTSASDAYYNGDA 828
GR +++ GLP+P + +++ + +++E ++ L+ +YN DA
Sbjct: 637 GRAVIITGLPFPPLKDPKVILKRRYLEANRTRENQLLS---GQEWYNLDA 683
Score = 181 (68.8 bits), Expect = 4.3e-58, Sum P(5) = 4.3e-58
Identities = 32/64 (50%), Positives = 46/64 (71%)
Query: 332 LDIEDLVHLGRHMRTCPYYGSRSMVPTADLVVLPYQSLLSKSARESLGLNLKNNIVIIDE 391
+DIEDLV +G+ ++ CPY+ SR +VP AD+ +PY LL AR++ + L N IVI+DE
Sbjct: 194 MDIEDLVKVGQRLKICPYFASRELVPQADITFMPYNYLLDPKARKANKIELGNTIVILDE 253
Query: 392 AHNL 395
AHN+
Sbjct: 254 AHNI 257
Score = 136 (52.9 bits), Expect = 4.3e-58, Sum P(5) = 4.3e-58
Identities = 30/58 (51%), Positives = 41/58 (70%)
Query: 219 VLKVYFCSRTHSQLSQFIKELRKTVFANEIKVVCLGSRKNFCINEEVLR-LGNSTHIN 275
V KV + SRTHSQL+Q ++EL++T +AN ++ V LGSR CI+ EV+R GNS N
Sbjct: 106 VPKVIYASRTHSQLTQAMRELKRTAYAN-MRSVVLGSRDQLCIHPEVMREQGNSNKTN 162
Score = 132 (51.5 bits), Expect = 4.3e-58, Sum P(5) = 4.3e-58
Identities = 33/82 (40%), Positives = 45/82 (54%)
Query: 842 GKEYYENLCMKAVNQSIGRAIRHINDHAAILLVDLRYASESSKRSCSHPANKLPRWIKDR 901
G+E+Y +AVNQ+IGR IRH ND+ AILL D R+ S +L +WI+
Sbjct: 675 GQEWYNLDATRAVNQAIGRVIRHRNDYGAILLCDSRFKDASQ-------VQQLSKWIRGH 727
Query: 902 LVS--STNNYGEVHRLLHQFFK 921
L + +G + R L QFFK
Sbjct: 728 LGDRPQCSPFGPIVRELRQFFK 749
Score = 121 (47.7 bits), Expect = 4.3e-58, Sum P(5) = 4.3e-58
Identities = 23/44 (52%), Positives = 33/44 (75%)
Query: 20 YSIQTDFM-KALYCSLENGGVSMLESPTGTGKTLSIICSALQWV 62
Y +Q +M K ++C L +G +LESPTGTGKTLS++CS+L W+
Sbjct: 18 YPVQRAYMEKVIHC-LRDGTNGVLESPTGTGKTLSLLCSSLAWI 60
Score = 41 (19.5 bits), Expect = 2.5e-35, Sum P(5) = 2.5e-35
Identities = 10/38 (26%), Positives = 19/38 (50%)
Query: 728 THVESVLKEYQKTIDTLSSRPKEDSTPLNGAMLLAVVG 765
T ++ +L E +K ID + D T +M+ ++G
Sbjct: 310 TLLKEMLLELEKAIDAIVVDNAVDGTTFPASMMYELLG 347
>UNIPROTKB|B3NSW1 [details] [associations]
symbol:GG18780 "Regulator of telomere elongation helicase 1
homolog" species:7220 "Drosophila erecta" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0005524
"ATP binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0010569 "regulation of double-strand break repair via
homologous recombination" evidence=ISS] InterPro:IPR006555
InterPro:IPR010614 InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307
PROSITE:PS00690 PROSITE:PS51193 SMART:SM00491 INTERPRO:IPR013020
GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0006281 GO:GO:0051539 GO:GO:0004003 InterPro:IPR014001
SMART:SM00487 GO:GO:0010569 TIGRFAMs:TIGR00604 EMBL:CH954180
KO:K11136 OrthoDB:EOG4S4MX7 RefSeq:XP_001977003.1
EnsemblMetazoa:FBtr0138834 GeneID:6550838 KEGG:der:Dere_GG18780
FlyBase:FBgn0110988 Uniprot:B3NSW1
Length = 985
Score = 254 (94.5 bits), Expect = 7.3e-58, Sum P(5) = 7.3e-58
Identities = 66/230 (28%), Positives = 112/230 (48%)
Query: 599 QAHAVILAGGTLQPIEETRERLFPWLSPNKFHFFSCSHIVPPESILPVALSCGPTGKXXX 658
Q +VIL GTL P++ L P H + HIV + + GP +
Sbjct: 472 QVRSVILTSGTLAPLKPLIAEL---AIPVAQHLEN-PHIVDQSQVYVKIIGTGPDRQQLI 527
Query: 659 XXXXXXXXXAMIEELGLLLCNLVSVVPEGIIVFFPSFEYVERVYGAWKSLGILDRIMKKK 718
I LG + N+ +VP+G++VFFPS+ + + AW++ G+ I KK
Sbjct: 528 SNYANRDNPKYISSLGQTILNVSRIVPDGLLVFFPSYPMLNKCVDAWQASGLWADISCKK 587
Query: 719 HVFREPRGNTHVESVLKEYQKTIDTLSSRPKEDSTPLNGAMLLAVVGGKISEGINFSDGM 778
+F EPR S ++E+ + I DS GA+ +AV GK+SEG++F+D
Sbjct: 588 PIFLEPRSKDQFTSTMEEFYQAI--------RDS---KGAVFMAVCRGKVSEGLDFADRN 636
Query: 779 GRCIVMVGLPYPSPSNIELLERIKHIEGLGDTNSKTLNTSASDAYYNGDA 828
GR +++ GLP+P + +++ + +++E ++ L+ +YN DA
Sbjct: 637 GRAVIITGLPFPPLKDPKVILKRRYLEANRTRENQLLS---GQEWYNLDA 683
Score = 184 (69.8 bits), Expect = 7.3e-58, Sum P(5) = 7.3e-58
Identities = 54/179 (30%), Positives = 90/179 (50%)
Query: 332 LDIEDLVHLGRHMRTCPYYGSRSMVPTADLVVLPYQSLLSKSARESLGLNLKNNIVIIDE 391
+DIEDLV +G+ ++ CPY+ SR +VP AD+ +PY LL AR++ + L N IVI+DE
Sbjct: 194 MDIEDLVKVGQRLKICPYFASRELVPQADITFMPYNYLLDPKARKANKIELGNTIVILDE 253
Query: 392 AHNLADSLINMYNAKITLSQ----LENVHSHLEKYF--GRFCSLLGPGNRRYIQTLMVFT 445
AHN+ + +I S +E+V +H+ + F G + G + + +
Sbjct: 254 AHNIEKICEESASVQIKSSDVAMAIEDV-THIMQVFASGESQDMAGDEPKDFTLDDLTLL 312
Query: 446 RAFLQVLLKEKDENDVRQDSENSTGAKHAFDSSVAINEFLFSLNIDNI-NLV-KLLKYI 502
+ L L K D V +E +T + F + N+ I +L+ KL++Y+
Sbjct: 313 KEMLLELEKAIDAVVVDNAAEGTTFPASLMYELLGKANFTYG-NVATIVSLLDKLVQYL 370
Score = 136 (52.9 bits), Expect = 7.3e-58, Sum P(5) = 7.3e-58
Identities = 30/58 (51%), Positives = 41/58 (70%)
Query: 219 VLKVYFCSRTHSQLSQFIKELRKTVFANEIKVVCLGSRKNFCINEEVLR-LGNSTHIN 275
V KV + SRTHSQL+Q ++EL++T +AN ++ V LGSR CI+ EV+R GNS N
Sbjct: 106 VPKVIYASRTHSQLTQAMRELKRTAYAN-MRSVVLGSRDQLCIHPEVMREQGNSNKTN 162
Score = 132 (51.5 bits), Expect = 7.3e-58, Sum P(5) = 7.3e-58
Identities = 33/82 (40%), Positives = 45/82 (54%)
Query: 842 GKEYYENLCMKAVNQSIGRAIRHINDHAAILLVDLRYASESSKRSCSHPANKLPRWIKDR 901
G+E+Y +AVNQ+IGR IRH ND+ AILL D R+ S +L +WI+
Sbjct: 675 GQEWYNLDATRAVNQAIGRVIRHRNDYGAILLCDSRFKDASQ-------VQQLSKWIRGH 727
Query: 902 LVS--STNNYGEVHRLLHQFFK 921
L + +G + R L QFFK
Sbjct: 728 LGDRPQCSPFGPIVRELRQFFK 749
Score = 118 (46.6 bits), Expect = 7.3e-58, Sum P(5) = 7.3e-58
Identities = 23/44 (52%), Positives = 32/44 (72%)
Query: 20 YSIQTDFM-KALYCSLENGGVSMLESPTGTGKTLSIICSALQWV 62
Y +Q +M K + C L +G +LESPTGTGKTLS++CS+L W+
Sbjct: 18 YPVQRAYMEKVIQC-LRDGTNGVLESPTGTGKTLSLLCSSLAWI 60
>UNIPROTKB|B4PZB4 [details] [associations]
symbol:GE16425 "Regulator of telomere elongation helicase 1
homolog" species:7245 "Drosophila yakuba" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0005524
"ATP binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0010569 "regulation of double-strand break repair via
homologous recombination" evidence=ISS] InterPro:IPR006555
InterPro:IPR010614 InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307
PROSITE:PS00690 PROSITE:PS51193 SMART:SM00491 INTERPRO:IPR013020
GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0006281 GO:GO:0051539 GO:GO:0004003 InterPro:IPR014001
SMART:SM00487 GO:GO:0010569 eggNOG:COG1199 TIGRFAMs:TIGR00604
EMBL:CM000162 KO:K11136 OrthoDB:EOG4S4MX7 RefSeq:XP_002099973.1
EnsemblMetazoa:FBtr0262943 GeneID:6524109 KEGG:dya:Dyak_GE16425
FlyBase:FBgn0233951 Uniprot:B4PZB4
Length = 985
Score = 255 (94.8 bits), Expect = 1.1e-57, Sum P(5) = 1.1e-57
Identities = 66/230 (28%), Positives = 112/230 (48%)
Query: 599 QAHAVILAGGTLQPIEETRERLFPWLSPNKFHFFSCSHIVPPESILPVALSCGPTGKXXX 658
Q +VIL GTL P++ L P H + HIV + + GP +
Sbjct: 472 QVRSVILTSGTLAPLKPLIAEL---AIPVAQHLEN-PHIVDQSQVYVKIIGTGPDRQQLI 527
Query: 659 XXXXXXXXXAMIEELGLLLCNLVSVVPEGIIVFFPSFEYVERVYGAWKSLGILDRIMKKK 718
I LG + N+ +VP+G++VFFPS+ + + AW++ G+ I KK
Sbjct: 528 SNYANRDNPKYISSLGQTILNVSRIVPDGLLVFFPSYPMLNKCVDAWQASGLWADISVKK 587
Query: 719 HVFREPRGNTHVESVLKEYQKTIDTLSSRPKEDSTPLNGAMLLAVVGGKISEGINFSDGM 778
+F EPR S ++E+ + I DS GA+ +AV GK+SEG++F+D
Sbjct: 588 PIFLEPRSKDQFTSTMEEFYQAI--------RDS---KGAVFMAVCRGKVSEGLDFADRN 636
Query: 779 GRCIVMVGLPYPSPSNIELLERIKHIEGLGDTNSKTLNTSASDAYYNGDA 828
GR +++ GLP+P + +++ + +++E ++ L+ +YN DA
Sbjct: 637 GRAVIITGLPFPPLKDPKVILKRRYLEANRTRENQLLS---GQEWYNLDA 683
Score = 181 (68.8 bits), Expect = 1.1e-57, Sum P(5) = 1.1e-57
Identities = 32/64 (50%), Positives = 46/64 (71%)
Query: 332 LDIEDLVHLGRHMRTCPYYGSRSMVPTADLVVLPYQSLLSKSARESLGLNLKNNIVIIDE 391
+DIEDLV +G+ ++ CPY+ SR +VP AD+ +PY LL AR++ + L N IVI+DE
Sbjct: 194 MDIEDLVKVGQRLKICPYFASRELVPQADITFMPYNYLLDPKARKANKIELGNTIVILDE 253
Query: 392 AHNL 395
AHN+
Sbjct: 254 AHNI 257
Score = 136 (52.9 bits), Expect = 1.1e-57, Sum P(5) = 1.1e-57
Identities = 30/58 (51%), Positives = 41/58 (70%)
Query: 219 VLKVYFCSRTHSQLSQFIKELRKTVFANEIKVVCLGSRKNFCINEEVLR-LGNSTHIN 275
V KV + SRTHSQL+Q ++EL++T +AN ++ V LGSR CI+ EV+R GNS N
Sbjct: 106 VPKVIYASRTHSQLTQAMRELKRTAYAN-MRSVVLGSRDQLCIHPEVMREQGNSNKTN 162
Score = 132 (51.5 bits), Expect = 1.1e-57, Sum P(5) = 1.1e-57
Identities = 33/82 (40%), Positives = 45/82 (54%)
Query: 842 GKEYYENLCMKAVNQSIGRAIRHINDHAAILLVDLRYASESSKRSCSHPANKLPRWIKDR 901
G+E+Y +AVNQ+IGR IRH ND+ AILL D R+ S +L +WI+
Sbjct: 675 GQEWYNLDATRAVNQAIGRVIRHRNDYGAILLCDSRFKDASQ-------VQQLSKWIRGH 727
Query: 902 LVS--STNNYGEVHRLLHQFFK 921
L + +G + R L QFFK
Sbjct: 728 LGDRPQCSPFGPIVRELRQFFK 749
Score = 118 (46.6 bits), Expect = 1.1e-57, Sum P(5) = 1.1e-57
Identities = 23/44 (52%), Positives = 32/44 (72%)
Query: 20 YSIQTDFM-KALYCSLENGGVSMLESPTGTGKTLSIICSALQWV 62
Y +Q +M K + C L +G +LESPTGTGKTLS++CS+L W+
Sbjct: 18 YPVQRAYMEKVIQC-LRDGTNGVLESPTGTGKTLSLLCSSLAWI 60
>UNIPROTKB|B3MSG8 [details] [associations]
symbol:GF20802 "Regulator of telomere elongation helicase 1
homolog" species:7217 "Drosophila ananassae" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0005524
"ATP binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0010569 "regulation of double-strand break repair via
homologous recombination" evidence=ISS] InterPro:IPR006555
InterPro:IPR010614 InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307
PROSITE:PS00690 PROSITE:PS51193 SMART:SM00491 INTERPRO:IPR013020
GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0006281 GO:GO:0051539 GO:GO:0004003 InterPro:IPR014001
SMART:SM00487 GO:GO:0010569 eggNOG:COG1199 TIGRFAMs:TIGR00604
EMBL:CH902622 KO:K11136 OrthoDB:EOG4S4MX7 RefSeq:XP_001964274.1
EnsemblMetazoa:FBtr0125502 GeneID:6503494 KEGG:dan:Dana_GF20802
FlyBase:FBgn0097808 InParanoid:B3MSG8 Uniprot:B3MSG8
Length = 994
Score = 255 (94.8 bits), Expect = 1.2e-57, Sum P(5) = 1.2e-57
Identities = 66/230 (28%), Positives = 113/230 (49%)
Query: 599 QAHAVILAGGTLQPIEETRERLFPWLSPNKFHFFSCSHIVPPESILPVALSCGPTGKXXX 658
Q +VIL GTL P++ L P H + HIV + + GP +
Sbjct: 472 QVRSVILTSGTLAPLKPLIAEL---AIPVAQHLEN-PHIVDQSQVYVKIIGTGPDRQPLI 527
Query: 659 XXXXXXXXXAMIEELGLLLCNLVSVVPEGIIVFFPSFEYVERVYGAWKSLGILDRIMKKK 718
I LG + N+ +VP+G++VFFPS+ + + AW++ G+ I KK
Sbjct: 528 SNYTNRDNPKYISSLGQTILNVSRLVPDGLLVFFPSYPMLNKCVDAWQASGLWADIASKK 587
Query: 719 HVFREPRGNTHVESVLKEYQKTIDTLSSRPKEDSTPLNGAMLLAVVGGKISEGINFSDGM 778
+F EPRG S ++E+ + I DS GA +AV GK+SEG++F+D
Sbjct: 588 PIFLEPRGKDQFTSTMEEFYQAI--------RDS---KGACFMAVCRGKVSEGLDFADRN 636
Query: 779 GRCIVMVGLPYPSPSNIELLERIKHIEGLGDTNSKTLNTSASDAYYNGDA 828
GR +++ GLP+P + +++ + +++E ++ L+ + +YN +A
Sbjct: 637 GRAVIITGLPFPPLKDPKVILKRRYLESNRTRENQLLS---GNEWYNLEA 683
Score = 183 (69.5 bits), Expect = 1.2e-57, Sum P(5) = 1.2e-57
Identities = 59/200 (29%), Positives = 100/200 (50%)
Query: 332 LDIEDLVHLGRHMRTCPYYGSRSMVPTADLVVLPYQSLLSKSARESLGLNLKNNIVIIDE 391
+DIEDL+ +G+ ++ CPYY S+ +VP AD+ +PY LL AR++ + L N IVI+DE
Sbjct: 194 MDIEDLIKVGQKLKMCPYYASKELVPQADITFMPYNYLLDPKARKANKIELGNTIVILDE 253
Query: 392 AHNLADSLINMYNAKITLSQ----LENVHSHLEKYFGRFC--SLLGPGNRRY-IQTLMVF 444
AHN+ + +I S +E+V +H+ K F + G + + I LM+
Sbjct: 254 AHNIEKICEESASVQIKSSDVAIAIEDV-THIMKAFASDSPQDMAGDEPKDFTIDDLMLL 312
Query: 445 TRAFLQVLLKEKDENDVRQDSENSTGAKHAFDSSVAINEFLFSLNIDNINLVKLLKYIKE 504
L + EK + V D+ GA + +S+ I E L N N+ ++ + +
Sbjct: 313 KEMLLDL---EKAIDAVAVDNPID-GA--TYPASM-IYELLGKANFTYGNVATIVALLDK 365
Query: 505 SNIIHKVSGYGDKAASLQKG 524
++ + + SL+KG
Sbjct: 366 --LVQYLMVASQQQMSLRKG 383
Score = 136 (52.9 bits), Expect = 1.2e-57, Sum P(5) = 1.2e-57
Identities = 29/58 (50%), Positives = 42/58 (72%)
Query: 219 VLKVYFCSRTHSQLSQFIKELRKTVFANEIKVVCLGSRKNFCINEEVLR-LGNSTHIN 275
V KV + SRTHSQL+Q ++EL++T ++N ++ V LGSR CI+ EV R +GNS +N
Sbjct: 106 VPKVIYASRTHSQLTQAMRELKRTAYSN-MRSVVLGSRDQLCIHPEVSREVGNSNKVN 162
Score = 129 (50.5 bits), Expect = 1.2e-57, Sum P(5) = 1.2e-57
Identities = 32/82 (39%), Positives = 44/82 (53%)
Query: 842 GKEYYENLCMKAVNQSIGRAIRHINDHAAILLVDLRYASESSKRSCSHPANKLPRWIKDR 901
G E+Y +AVNQ+IGR IRH ND+ AILL D R+ + +L +WI+
Sbjct: 675 GNEWYNLEATRAVNQAIGRVIRHRNDYGAILLCDSRFKDAAQ-------VQQLSKWIRGH 727
Query: 902 LVS--STNNYGEVHRLLHQFFK 921
L + +G + R L QFFK
Sbjct: 728 LGDRPQCSPFGPIVRELRQFFK 749
Score = 119 (46.9 bits), Expect = 1.2e-57, Sum P(5) = 1.2e-57
Identities = 23/44 (52%), Positives = 33/44 (75%)
Query: 20 YSIQTDFM-KALYCSLENGGVSMLESPTGTGKTLSIICSALQWV 62
Y +Q +M K + C L++G +LESPTGTGKTLS++CS+L W+
Sbjct: 18 YPVQRAYMEKVIQC-LKDGTNGVLESPTGTGKTLSLLCSSLAWI 60
>UNIPROTKB|B4L1Z2 [details] [associations]
symbol:GI15901 "Regulator of telomere elongation helicase 1
homolog" species:7230 "Drosophila mojavensis" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0005524
"ATP binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0010569 "regulation of double-strand break repair via
homologous recombination" evidence=ISS] InterPro:IPR006554
InterPro:IPR006555 InterPro:IPR010614 InterPro:IPR014013
Pfam:PF06733 Pfam:PF13307 PROSITE:PS00690 PROSITE:PS51193
SMART:SM00488 SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524
GO:GO:0005634 GO:GO:0046872 GO:GO:0003677 GO:GO:0006281
GO:GO:0051539 GO:GO:0004003 GO:GO:0010569 TIGRFAMs:TIGR00604
EMBL:CH933810 KO:K11136 OrthoDB:EOG4S4MX7 RefSeq:XP_002010396.1
EnsemblMetazoa:FBtr0166626 GeneID:6584754 KEGG:dmo:Dmoj_GI15901
FlyBase:FBgn0138650 InParanoid:B4L1Z2 Uniprot:B4L1Z2
Length = 1014
Score = 255 (94.8 bits), Expect = 2.9e-57, Sum P(5) = 2.9e-57
Identities = 68/231 (29%), Positives = 112/231 (48%)
Query: 599 QAHAVILAGGTLQPIEETRERLFPWLSPNKFHFFSCSHIVPPESILPVALSCGPTGKXXX 658
Q +VIL GTL P++ L P H + HIV + + GP +
Sbjct: 473 QVRSVILTSGTLAPLKPLIAEL---AIPVAQHLEN-PHIVDQSQVYVKIIGTGPDREQLI 528
Query: 659 XXXXXXXXXAMIEELGLLLCNLVSVVPEGIIVFFPSFEYVERVYGAWKSLGILDRIMKKK 718
I LG + N+ +VP+G++VFFPS+ + + AW++ G+ + +K
Sbjct: 529 SNYKNRDNPKYISSLGQTILNVSRIVPDGLLVFFPSYPMLNQCVDAWQASGLWADLSSRK 588
Query: 719 HVFREPRGNTHVESVLKEYQKTIDTLSSRPKEDSTPLNGAMLLAVVGGKISEGINFSDGM 778
+F EPRG S ++E+ + I DS GA +AV GK+SEG++F+D
Sbjct: 589 PIFLEPRGKDQFTSTMEEFYQAI--------RDS---KGACFMAVCRGKVSEGLDFADRN 637
Query: 779 GRCIVMVGLPYPSPSNIELLERIKHIEGLGDTNSKTLNTSAS-DAYYNGDA 828
GR +++ GLP+P + +++ + +++E TN N S +YN DA
Sbjct: 638 GRAVIITGLPFPPLKDPKVILKRRYLE----TNRTKENQLLSGQEWYNLDA 684
Score = 181 (68.8 bits), Expect = 2.9e-57, Sum P(5) = 2.9e-57
Identities = 38/96 (39%), Positives = 59/96 (61%)
Query: 332 LDIEDLVHLGRHMRTCPYYGSRSMVPTADLVVLPYQSLLSKSARESLGLNLKNNIVIIDE 391
+DIEDLV +G+ ++ CPYY S+ +V +AD+ +PY LL AR++ + L N IVI+DE
Sbjct: 195 MDIEDLVKVGQRLKMCPYYASKELVSSADITFMPYNYLLDPKARKANKIELSNTIVILDE 254
Query: 392 AHNLADSLINMYNAKITLSQ----LENVHSHLEKYF 423
AHN+ + +I S +E+V +H+ K F
Sbjct: 255 AHNIEKICEESASVQIRSSDVAMAIEDV-THIMKIF 289
Score = 131 (51.2 bits), Expect = 2.9e-57, Sum P(5) = 2.9e-57
Identities = 32/82 (39%), Positives = 47/82 (57%)
Query: 842 GKEYYENLCMKAVNQSIGRAIRHINDHAAILLVDLRYASESSKRSCSHPANKLPRWIKDR 901
G+E+Y +AVNQ+IGR IRH +D+ AILL D R+ S +L +WI+
Sbjct: 676 GQEWYNLDATRAVNQAIGRVIRHRHDYGAILLCDARFQDASQ-------VQQLSKWIRGH 728
Query: 902 LVS--STNNYGEVHRLLHQFFK 921
L + ++ +G + R L QFFK
Sbjct: 729 LGARPQSSPFGPIVRELRQFFK 750
Score = 129 (50.5 bits), Expect = 2.9e-57, Sum P(5) = 2.9e-57
Identities = 27/58 (46%), Positives = 42/58 (72%)
Query: 219 VLKVYFCSRTHSQLSQFIKELRKTVFANEIKVVCLGSRKNFCINEEVLR-LGNSTHIN 275
V KV + SRTHSQL+Q ++EL++T +A+ ++ V LGSR CI+ +V++ GNS +N
Sbjct: 107 VPKVIYASRTHSQLTQAMRELKRTAYAS-MRSVVLGSRDQLCIHPDVMKEQGNSNKVN 163
Score = 123 (48.4 bits), Expect = 2.9e-57, Sum P(5) = 2.9e-57
Identities = 22/43 (51%), Positives = 31/43 (72%)
Query: 20 YSIQTDFMKALYCSLENGGVSMLESPTGTGKTLSIICSALQWV 62
Y +Q FM+ + L +G +LESPTGTGKTLS++CS+L W+
Sbjct: 18 YEVQRAFMEKVIMCLRDGTNGVLESPTGTGKTLSLLCSSLAWI 60
Score = 47 (21.6 bits), Expect = 3.9e-26, Sum P(4) = 3.9e-26
Identities = 15/57 (26%), Positives = 27/57 (47%)
Query: 465 SENSTGAKHAFDSSVAINEFLFSLNIDNINLVKLLKYIKESNIIHKVSGYGDKAASL 521
+ S A +A D +N + S++ +N +LVK+ K + S ++ G K L
Sbjct: 831 TNQSQTAPNAMDFMSRLNSNVTSIDFNNTDLVKIHKRERSSPTANESLTSGKKRFKL 887
>UNIPROTKB|B4M891 [details] [associations]
symbol:GJ16649 "Regulator of telomere elongation helicase 1
homolog" species:7244 "Drosophila virilis" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0005524
"ATP binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0010569 "regulation of double-strand break repair via
homologous recombination" evidence=ISS] InterPro:IPR006555
InterPro:IPR010614 InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307
PROSITE:PS00690 PROSITE:PS51193 SMART:SM00491 INTERPRO:IPR013020
GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0006281 GO:GO:0051539 GO:GO:0004003 InterPro:IPR014001
SMART:SM00487 EMBL:CH940653 GO:GO:0010569 eggNOG:COG1199
TIGRFAMs:TIGR00604 KO:K11136 OMA:PFPPLKD OrthoDB:EOG4S4MX7
RefSeq:XP_002056881.1 EnsemblMetazoa:FBtr0232574 GeneID:6633257
KEGG:dvi:Dvir_GJ16649 FlyBase:FBgn0203833 InParanoid:B4M891
Uniprot:B4M891
Length = 1005
Score = 248 (92.4 bits), Expect = 6.5e-57, Sum P(5) = 6.5e-57
Identities = 70/232 (30%), Positives = 113/232 (48%)
Query: 600 AH--AVILAGGTLQPIEETRERLFPWLSPNKFHFFSCSHIVPPESILPVALSCGPTGKXX 657
AH +VIL GTL P++ L P H + HIV + + GP +
Sbjct: 471 AHVRSVILTSGTLAPLKPLIAEL---AIPVAQHLEN-PHIVDRSQVYVKIIGTGPDREQL 526
Query: 658 XXXXXXXXXXAMIEELGLLLCNLVSVVPEGIIVFFPSFEYVERVYGAWKSLGILDRIMKK 717
I LG + N+ +VP+G++VFFPS+ + + AW++ G+ I +
Sbjct: 527 ISNYKNRDNPKYISSLGQTILNVSRIVPDGLLVFFPSYPMLNQCVDAWQASGLWADISCR 586
Query: 718 KHVFREPRGNTHVESVLKEYQKTIDTLSSRPKEDSTPLNGAMLLAVVGGKISEGINFSDG 777
K +F EPRG S ++E+ + I DS GA +AV GK+SEG++F+D
Sbjct: 587 KPIFLEPRGKDQFTSTMEEFYQAI--------RDS---KGACFMAVCRGKVSEGLDFADR 635
Query: 778 MGRCIVMVGLPYPSPSNIELLERIKHIEGLGDTNSKTLNTSAS-DAYYNGDA 828
GR +++ GLP+P + +++ + +++E TN N S +YN DA
Sbjct: 636 NGRAVIITGLPFPPLKDPKVVLKRRYLE----TNRTKENQLLSGQEWYNLDA 683
Score = 173 (66.0 bits), Expect = 6.5e-57, Sum P(5) = 6.5e-57
Identities = 56/181 (30%), Positives = 91/181 (50%)
Query: 332 LDIEDLVHLGRHMRTCPYYGSRSMVPTADLVVLPYQSLLSKSARESLGLNLKNNIVIIDE 391
+DIEDLV +G+ ++ CPY+ S+ +V AD+ +PY LL AR++ + L N IVI+DE
Sbjct: 193 MDIEDLVKVGQRLKMCPYFASKELVNGADITFMPYNYLLDPKARKANKIELSNTIVILDE 252
Query: 392 AHNLADSLINMYNAKITLSQ----LENVHSHLEKYF--GRFCSLLGPGNRRYIQTL--MV 443
AHN+ + +I S +E++ +H+ K F G GP + TL +
Sbjct: 253 AHNIEKICEESASVQIRSSDVAMAIEDI-THIMKIFTSGDAQDTGGPEEPKDF-TLDDLT 310
Query: 444 FTRAFLQVLLKEKDENDVRQDSENST-GAKHAFDSSVAINEFLFSLNIDNINLV-KLLKY 501
+ L L K D V +E +T A H ++ N F + + L+ KL++Y
Sbjct: 311 LLKEMLLELEKAIDGVVVDNKAEGTTYPAAHIYELLGKAN-FTYGNCATIVALLDKLVQY 369
Query: 502 I 502
+
Sbjct: 370 L 370
Score = 143 (55.4 bits), Expect = 6.5e-57, Sum P(5) = 6.5e-57
Identities = 31/58 (53%), Positives = 42/58 (72%)
Query: 219 VLKVYFCSRTHSQLSQFIKELRKTVFANEIKVVCLGSRKNFCINEEVLR-LGNSTHIN 275
V KV + SRTHSQLSQ ++EL++T +AN +K V LGSR CI+ +V+R GNS +N
Sbjct: 105 VPKVIYASRTHSQLSQAMRELKRTAYAN-MKSVVLGSRDQLCIHPDVMREQGNSNKVN 161
Score = 135 (52.6 bits), Expect = 6.5e-57, Sum P(5) = 6.5e-57
Identities = 33/82 (40%), Positives = 47/82 (57%)
Query: 842 GKEYYENLCMKAVNQSIGRAIRHINDHAAILLVDLRYASESSKRSCSHPANKLPRWIKDR 901
G+E+Y +AVNQ+IGR IRH ND+ AILL D R+ S +L +WI+
Sbjct: 675 GQEWYNLDATRAVNQAIGRVIRHRNDYGAILLCDARFQDMSQ-------VQQLSKWIRGH 727
Query: 902 LVS--STNNYGEVHRLLHQFFK 921
L + ++ +G + R L QFFK
Sbjct: 728 LGARPQSSPFGPIVRELRQFFK 749
Score = 117 (46.2 bits), Expect = 6.5e-57, Sum P(5) = 6.5e-57
Identities = 20/43 (46%), Positives = 31/43 (72%)
Query: 20 YSIQTDFMKALYCSLENGGVSMLESPTGTGKTLSIICSALQWV 62
Y +Q +M+ + L +G +LESPTGTGKTLS++C++L W+
Sbjct: 18 YEVQRAYMEKVIMCLRDGTNGVLESPTGTGKTLSLLCASLAWI 60
>UNIPROTKB|B4JNS2 [details] [associations]
symbol:GH24089 "Regulator of telomere elongation helicase 1
homolog" species:7222 "Drosophila grimshawi" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0005524
"ATP binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0010569 "regulation of double-strand break repair via
homologous recombination" evidence=ISS] InterPro:IPR006554
InterPro:IPR006555 InterPro:IPR010614 InterPro:IPR014013
Pfam:PF06733 Pfam:PF13307 PROSITE:PS00690 PROSITE:PS51193
SMART:SM00488 SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524
GO:GO:0005634 GO:GO:0046872 GO:GO:0003677 GO:GO:0006281
GO:GO:0051539 GO:GO:0004003 EMBL:CH916371 GO:GO:0010569
eggNOG:COG1199 TIGRFAMs:TIGR00604 KO:K11136 OMA:PFPPLKD
OrthoDB:EOG4S4MX7 RefSeq:XP_001992658.1 EnsemblMetazoa:FBtr0159503
GeneID:6565576 KEGG:dgr:Dgri_GH24089 FlyBase:FBgn0131545
InParanoid:B4JNS2 Uniprot:B4JNS2
Length = 986
Score = 247 (92.0 bits), Expect = 1.5e-56, Sum P(5) = 1.5e-56
Identities = 67/228 (29%), Positives = 112/228 (49%)
Query: 602 AVILAGGTLQPIEETRERLFPWLSPNKFHFFSCSHIVPPESILPVALSCGPTGKXXXXXX 661
+VIL GTL P++ L P H + HIV + + GP +
Sbjct: 476 SVILTSGTLAPLKPLIAEL---AIPVAQHLEN-PHIVNEAQVYVKIIGTGPDREQLISNY 531
Query: 662 XXXXXXAMIEELGLLLCNLVSVVPEGIIVFFPSFEYVERVYGAWKSLGILDRIMKKKHVF 721
I LG + N+ +VP+G++VFFPS+ + + AW++ G+ I +K +F
Sbjct: 532 KNRDNPKYISSLGQTILNVSRIVPDGLLVFFPSYPMLNQCVDAWQASGLWADISSRKPIF 591
Query: 722 REPRGNTHVESVLKEYQKTIDTLSSRPKEDSTPLNGAMLLAVVGGKISEGINFSDGMGRC 781
EPRG S ++E+ + I DS GA +AV GK+SEG++F+D GR
Sbjct: 592 LEPRGKDQFTSTMEEFYQAI--------RDS---KGACFMAVCRGKVSEGLDFADRNGRA 640
Query: 782 IVMVGLPYPSPSNIELLERIKHIEGLGDTNSKTLNTSAS-DAYYNGDA 828
+++ GLP+P + +++ + +++E TN N S + +YN +A
Sbjct: 641 VIITGLPFPPLKDPKVILKRRYLE----TNRTRENQLLSGNEWYNLEA 684
Score = 170 (64.9 bits), Expect = 1.5e-56, Sum P(5) = 1.5e-56
Identities = 36/96 (37%), Positives = 58/96 (60%)
Query: 332 LDIEDLVHLGRHMRTCPYYGSRSMVPTADLVVLPYQSLLSKSARESLGLNLKNNIVIIDE 391
+DIEDLV +G+ ++ CPY+ S+ +V +AD+ +PY LL AR++ + L N IVI+DE
Sbjct: 196 MDIEDLVKVGQRLKMCPYFASKELVNSADITFMPYNYLLDPKARKANKIELSNAIVILDE 255
Query: 392 AHNLADSLINMYNAKITLSQ----LENVHSHLEKYF 423
HN+ + +I S +E+V +H+ K F
Sbjct: 256 GHNIEKICEESASVQIRSSDVAIAIEDV-THIMKIF 290
Score = 139 (54.0 bits), Expect = 1.5e-56, Sum P(5) = 1.5e-56
Identities = 29/58 (50%), Positives = 42/58 (72%)
Query: 219 VLKVYFCSRTHSQLSQFIKELRKTVFANEIKVVCLGSRKNFCINEEVLR-LGNSTHIN 275
V KV + SRTHSQL+Q ++EL++T +AN ++ V LGSR CI+ +V+R GNS +N
Sbjct: 108 VPKVIYASRTHSQLTQAMRELKRTAYAN-MRAVVLGSRDQLCIHPDVMREQGNSNKVN 164
Score = 138 (53.6 bits), Expect = 1.5e-56, Sum P(5) = 1.5e-56
Identities = 33/82 (40%), Positives = 47/82 (57%)
Query: 842 GKEYYENLCMKAVNQSIGRAIRHINDHAAILLVDLRYASESSKRSCSHPANKLPRWIKDR 901
G E+Y +AVNQ+IGR IRH ND+ AILL D R+ S +L +WI++
Sbjct: 676 GNEWYNLEATRAVNQAIGRVIRHRNDYGAILLCDARFQDASQ-------VQQLSKWIRNH 728
Query: 902 LVS--STNNYGEVHRLLHQFFK 921
L + ++ +G + R L QFFK
Sbjct: 729 LGARPQSSPFGPIVRELRQFFK 750
Score = 118 (46.6 bits), Expect = 1.5e-56, Sum P(5) = 1.5e-56
Identities = 21/43 (48%), Positives = 30/43 (69%)
Query: 20 YSIQTDFMKALYCSLENGGVSMLESPTGTGKTLSIICSALQWV 62
Y +Q +M+ + L +G +LESPTGTGKTLS++CS L W+
Sbjct: 18 YDVQRAYMEKVIICLRDGTNGVLESPTGTGKTLSLLCSTLGWI 60
>UNIPROTKB|B4NDG5 [details] [associations]
symbol:GK24923 "Regulator of telomere elongation helicase 1
homolog" species:7260 "Drosophila willistoni" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0005524
"ATP binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0010569 "regulation of double-strand break repair via
homologous recombination" evidence=ISS] InterPro:IPR006555
InterPro:IPR010614 InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307
PROSITE:PS00690 PROSITE:PS51193 SMART:SM00491 INTERPRO:IPR013020
GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0006281 GO:GO:0051539 GO:GO:0004003 InterPro:IPR014001
SMART:SM00487 EMBL:CH964239 GO:GO:0010569 eggNOG:COG1199
TIGRFAMs:TIGR00604 KO:K11136 OMA:PFPPLKD OrthoDB:EOG4S4MX7
RefSeq:XP_002071885.1 STRING:B4NDG5 EnsemblMetazoa:FBtr0255574
GeneID:6648559 KEGG:dwi:Dwil_GK24923 FlyBase:FBgn0226882
InParanoid:B4NDG5 Uniprot:B4NDG5
Length = 998
Score = 262 (97.3 bits), Expect = 1.8e-56, Sum P(5) = 1.8e-56
Identities = 69/230 (30%), Positives = 111/230 (48%)
Query: 599 QAHAVILAGGTLQPIEETRERLFPWLSPNKFHFFSCSHIVPPESILPVALSCGPTGKXXX 658
Q +VIL GTL P++ L P H + HIV + + GP +
Sbjct: 478 QVRSVILTSGTLAPLKPLIAEL---AIPVAQHLEN-PHIVDQSQVYVKIIGTGPDRQQLI 533
Query: 659 XXXXXXXXXAMIEELGLLLCNLVSVVPEGIIVFFPSFEYVERVYGAWKSLGILDRIMKKK 718
I LG + N+ +VP+G++VFFPS+ + + AW++ G+ I KK
Sbjct: 534 SNFKNRDNPKYISSLGQTILNVSRIVPDGLLVFFPSYPMLNKCVDAWQTSGLWADIAAKK 593
Query: 719 HVFREPRGNTHVESVLKEYQKTIDTLSSRPKEDSTPLNGAMLLAVVGGKISEGINFSDGM 778
+F EPRG + ++E+ + I DS GA +AV GK+SEG++F+D
Sbjct: 594 PIFLEPRGKDQFTTTMEEFYQAI--------RDS---KGACFMAVCRGKVSEGLDFADRN 642
Query: 779 GRCIVMVGLPYPSPSNIELLERIKHIEGLGDTNSKTLNTSASDAYYNGDA 828
GR +++ GLPYP + +++ + +++E T L T +YN DA
Sbjct: 643 GRAVIITGLPYPPLKDPKVILKRRYLEA-NRTKENQLLTGQE--WYNLDA 689
Score = 169 (64.5 bits), Expect = 1.8e-56, Sum P(5) = 1.8e-56
Identities = 30/64 (46%), Positives = 45/64 (70%)
Query: 332 LDIEDLVHLGRHMRTCPYYGSRSMVPTADLVVLPYQSLLSKSARESLGLNLKNNIVIIDE 391
+DIEDLV +G+ ++ CPY+ S+ +V AD+ +PY LL AR++ + L N IVI+DE
Sbjct: 196 MDIEDLVKVGQKLKMCPYFASKELVNDADITFMPYNYLLDPMARKANKIELSNTIVILDE 255
Query: 392 AHNL 395
AHN+
Sbjct: 256 AHNI 259
Score = 130 (50.8 bits), Expect = 1.8e-56, Sum P(5) = 1.8e-56
Identities = 28/58 (48%), Positives = 41/58 (70%)
Query: 219 VLKVYFCSRTHSQLSQFIKELRKTVFANEIKVVCLGSRKNFCINEEVLR-LGNSTHIN 275
V KV + SRTHSQL+Q ++EL+++ +A ++ V LGSR CI+ EV+R GNS +N
Sbjct: 108 VPKVIYASRTHSQLTQAMRELKRSAYAG-MRSVVLGSRDQLCIHPEVMREQGNSNKVN 164
Score = 126 (49.4 bits), Expect = 1.8e-56, Sum P(5) = 1.8e-56
Identities = 31/82 (37%), Positives = 46/82 (56%)
Query: 842 GKEYYENLCMKAVNQSIGRAIRHINDHAAILLVDLRYASESSKRSCSHPANKLPRWIKDR 901
G+E+Y +AVNQ+IGR IRH +D+ AILL D R+ S +L +WI+
Sbjct: 681 GQEWYNLDATRAVNQAIGRVIRHRHDYGAILLCDSRFQDNSQ-------VQQLSKWIRGH 733
Query: 902 LVS--STNNYGEVHRLLHQFFK 921
L + + +G + R L QFF+
Sbjct: 734 LGARPQCSPFGPIVRELRQFFR 755
Score = 123 (48.4 bits), Expect = 1.8e-56, Sum P(5) = 1.8e-56
Identities = 22/43 (51%), Positives = 31/43 (72%)
Query: 20 YSIQTDFMKALYCSLENGGVSMLESPTGTGKTLSIICSALQWV 62
Y +Q FM+ + L +G +LESPTGTGKTLS++CS+L W+
Sbjct: 18 YEVQRAFMEKVIICLRDGTNGVLESPTGTGKTLSLLCSSLAWI 60
Score = 46 (21.3 bits), Expect = 7.3e-25, Sum P(4) = 7.3e-25
Identities = 14/46 (30%), Positives = 23/46 (50%)
Query: 709 GILDRIMKKKHVFREPR-GNTHVESVLKEYQKTIDTLSSRPKEDST 753
G L +I K++ P G+T S LK+ K +D + + P S+
Sbjct: 873 GNLVKIHKRER--SSPTFGDTKSSSQLKKRYKLVDNIKTEPSTSSS 916
>UNIPROTKB|Q16X92 [details] [associations]
symbol:AAEL008960 "Regulator of telomere elongation
helicase 1 homolog" species:7159 "Aedes aegypti" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0005524
"ATP binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0010569 "regulation of double-strand break repair via
homologous recombination" evidence=ISS] InterPro:IPR006555
InterPro:IPR010614 InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307
PROSITE:PS00690 PROSITE:PS51193 SMART:SM00491 INTERPRO:IPR013020
GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0006281 GO:GO:0051539 GO:GO:0004003 InterPro:IPR014001
SMART:SM00487 GO:GO:0010569 eggNOG:COG1199 TIGRFAMs:TIGR00604
EMBL:CH477545 RefSeq:XP_001653621.1 UniGene:Aae.7622
ProteinModelPortal:Q16X92 PRIDE:Q16X92 EnsemblMetazoa:AAEL008960-RA
GeneID:5571306 KEGG:aag:AaeL_AAEL008960 VectorBase:AAEL008960
HOGENOM:HOG000007558 KO:K11136 OMA:PFPPLKD OrthoDB:EOG4S4MX7
PhylomeDB:Q16X92 Uniprot:Q16X92
Length = 1010
Score = 233 (87.1 bits), Expect = 3.3e-52, Sum P(5) = 3.3e-52
Identities = 57/229 (24%), Positives = 110/229 (48%)
Query: 600 AHAVILAGGTLQPIEETRERLFPWLSPNKFHFFSCSHIVPPESILPVALSCGPTGKXXXX 659
A ++IL GTL P++ L ++ HI+ + + GP +
Sbjct: 481 ARSIILTSGTLAPLKPLISELDIPIAVR----LENPHIIDGSQVCVKIVGQGPDKESLNS 536
Query: 660 XXXXXXXXAMIEELGLLLCNLVSVVPEGIIVFFPSFEYVERVYGAWKSLGILDRIMKKKH 719
I LG + + ++P G++VFFPS+ + + AW+ GI +I + K
Sbjct: 537 SYGNRDNPKYISSLGRTILSFCPIIPGGLLVFFPSYPLLNKCQEAWQETGIWAQISRTKP 596
Query: 720 VFREPRGNTHVESVLKEYQKTIDTLSSRPKEDSTPLNGAMLLAVVGGKISEGINFSDGMG 779
+F EPRG + + EY + I+ + GA+ +AV GK+SEG++F+D G
Sbjct: 597 IFVEPRGKDQFLNTMSEYYQKINDPDGK---------GAVFMAVCRGKVSEGLDFADMNG 647
Query: 780 RCIVMVGLPYPSPSNIELLERIKHIEGLGDTNSKTLNTSASDAYYNGDA 828
R +++ GLP+P + ++ + K+++ + ++ ++ D +Y+ +A
Sbjct: 648 RAVIITGLPFPPLKDARVILKKKYLQEVRTRENEIIS---GDEWYSLEA 693
Score = 171 (65.3 bits), Expect = 3.3e-52, Sum P(5) = 3.3e-52
Identities = 30/73 (41%), Positives = 49/73 (67%)
Query: 323 RNEISQQGALDIEDLVHLGRHMRTCPYYGSRSMVPTADLVVLPYQSLLSKSARESLGLNL 382
R E+ +DIEDLV +G +R CP++ S+ ++ +AD++ +PY LL AR++ L +
Sbjct: 196 RPEVVSNVIMDIEDLVKVGTKVRACPFFLSKELIESADILFMPYNYLLDPKARKANNLEI 255
Query: 383 KNNIVIIDEAHNL 395
N I+I+DEAHN+
Sbjct: 256 SNTIIILDEAHNV 268
Score = 127 (49.8 bits), Expect = 3.3e-52, Sum P(5) = 3.3e-52
Identities = 23/44 (52%), Positives = 32/44 (72%)
Query: 20 YSIQTDFMKALYCSLENGGVSMLESPTGTGKTLSIICSALQWVV 63
Y +Q D+M + L+N +LESPTGTGKTLS++CS+L WV+
Sbjct: 18 YQVQRDYMSRVIECLQNSTNGVLESPTGTGKTLSLLCSSLAWVL 61
Score = 125 (49.1 bits), Expect = 3.3e-52, Sum P(5) = 3.3e-52
Identities = 31/81 (38%), Positives = 47/81 (58%)
Query: 842 GKEYYENLCMKAVNQSIGRAIRHINDHAAILLVDLRYASESSKRSCSHPANKLPRWIKDR 901
G E+Y +AVNQ+IGR IRH ND+ AILL D R+ + K ++L WI+
Sbjct: 685 GDEWYSLEAARAVNQAIGRVIRHKNDYGAILLCDNRFHNHRQK-------SQLSSWIQKH 737
Query: 902 LVSSTN-NYGEVHRLLHQFFK 921
L ++ + N+G + L +FF+
Sbjct: 738 LNTNQHQNFGPIIGELSRFFR 758
Score = 116 (45.9 bits), Expect = 3.3e-52, Sum P(5) = 3.3e-52
Identities = 27/58 (46%), Positives = 39/58 (67%)
Query: 219 VLKVYFCSRTHSQLSQFIKELRKTVFANEIKVVCLGSRKNFCINEEVLRL-GNSTHIN 275
V K+ + SRTHSQL+Q ++E++ T ++ +K V LGSR CI+ EV + GNST N
Sbjct: 117 VPKIVYASRTHSQLTQVMQEMKNTSYSF-MKGVILGSRDQLCIHPEVSKEEGNSTKTN 173
>UNIPROTKB|J3QSE8 [details] [associations]
symbol:BRIP1 "Fanconi anemia group J protein" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR006555 InterPro:IPR010614 InterPro:IPR014013
Pfam:PF06733 Pfam:PF13307 PROSITE:PS51193 SMART:SM00491
INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0004003 InterPro:IPR014001 SMART:SM00487 TIGRFAMs:TIGR00604
EMBL:AC002994 EMBL:AC005969 EMBL:AC060798 HGNC:HGNC:20473
ProteinModelPortal:J3QSE8 Ensembl:ENST00000577598 Uniprot:J3QSE8
Length = 994
Score = 244 (91.0 bits), Expect = 5.9e-52, Sum P(5) = 5.9e-52
Identities = 63/248 (25%), Positives = 120/248 (48%)
Query: 556 NDGDGRIIISKARPISSXXXXXXXXYLKYVMLTGEKVFSEIVEQAHAVILAGGTLQPIEE 615
+D +G +++ K + S L + L FS+I + ++L GTL P++
Sbjct: 565 SDKNGLLVLPKNKKRSRQKTAVHV--LNFWCLNPAVAFSDINGKVQTIVLTSGTLSPMKS 622
Query: 616 TRERLFPWLSPNKFHFFSCSHIVPPESILPVALSCGPTGKXXXXXXXXXXXXAMIEELGL 675
L + +HI+ + + GP G+ +E+G
Sbjct: 623 FSSELGVTFTIQ----LEANHIIKNSQVWVGTIGSGPKGRNLCATFQNTETFEFQDEVGA 678
Query: 676 LLCNLVSVVPEGIIVFFPSFEYVERVYGAWKSLGILDRIMKKKHVFREPRGN--THVESV 733
LL ++ V +GI+ F PS++ +E++ W S G+ + K V EP+G T+ + +
Sbjct: 679 LLLSVCQTVSQGILCFLPSYKLLEKLKERWLSTGLWHNLELVKTVIVEPQGGEKTNFDEL 738
Query: 734 LKEYQKTIDTLSSRPKEDSTPLNGAMLLAVVGGKISEGINFSDGMGRCIVMVGLPYPSPS 793
L+ Y D + + ++D GA+L+AV GK+SEG++FSD R ++ +G+P+P+
Sbjct: 739 LQVYY---DAIKYKGEKD-----GALLVAVCRGKVSEGLDFSDDNARAVITIGIPFPNVK 790
Query: 794 NIEL-LER 800
++++ L+R
Sbjct: 791 DLQVELKR 798
Score = 198 (74.8 bits), Expect = 5.9e-52, Sum P(5) = 5.9e-52
Identities = 38/90 (42%), Positives = 54/90 (60%)
Query: 331 ALDIEDLVHLGRHMRTCPYYGSRSMVPTADLVVLPYQSLLSKSARESLGLNLKNNIVIID 390
A DIE+LV LG+ ++ CPYY +R ++ AD++ PY LL RES+ LNLK +VI+D
Sbjct: 334 AWDIEELVSLGKKLKACPYYTARELIQDADIIFCPYNYLLDAQIRESMDLNLKEQVVILD 393
Query: 391 EAHNLADSLINMYNAKITLSQLENVHSHLE 420
EAHN+ D + +T QL L+
Sbjct: 394 EAHNIEDCARESASYSVTEVQLRFARDELD 423
Score = 125 (49.1 bits), Expect = 5.9e-52, Sum P(5) = 5.9e-52
Identities = 25/61 (40%), Positives = 41/61 (67%)
Query: 221 KVYFCSRTHSQLSQFIKELRKTVFANEIKVVCLGSRKNFCINEEVLRLGNSTHINERCLE 280
K+YF +RTH Q++Q +ELR+T ++ + + L SR + C++ EV+ GN NE+C+E
Sbjct: 245 KIYFGTRTHKQIAQITRELRRTAYSG-VPMTILSSRDHTCVHPEVV--GNFNR-NEKCME 300
Query: 281 L 281
L
Sbjct: 301 L 301
Score = 108 (43.1 bits), Expect = 5.9e-52, Sum P(5) = 5.9e-52
Identities = 21/61 (34%), Positives = 39/61 (63%)
Query: 842 GKEYYENLCMKAVNQSIGRAIRHINDHAAILLVDLRYASESSKRSCSHPANKLPRWIKDR 901
G+++YE +A+NQ++GR IRH ND A++LVD R+ + S+ + L +W++ +
Sbjct: 813 GRQWYEIQAYRALNQALGRCIRHRNDWGALILVDDRFRNNPSRY-----ISGLSKWVRQQ 867
Query: 902 L 902
+
Sbjct: 868 I 868
Score = 93 (37.8 bits), Expect = 5.9e-52, Sum P(5) = 5.9e-52
Identities = 18/42 (42%), Positives = 27/42 (64%)
Query: 20 YSIQTDFMKALYCSLENGGVSMLESPTGTGKTLSIICSALQW 61
Y Q M ++ L + +LESPTG+GK+L+++CSAL W
Sbjct: 22 YPSQLAMMNSILRGLNSKQHCLLESPTGSGKSLALLCSALAW 63
>UNIPROTKB|B0W9F4 [details] [associations]
symbol:CPIJ003765 "Regulator of telomere elongation
helicase 1 homolog" species:7176 "Culex quinquefasciatus"
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISS]
[GO:0005524 "ATP binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0010569 "regulation of double-strand break repair
via homologous recombination" evidence=ISS] InterPro:IPR006555
InterPro:IPR010614 InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307
PROSITE:PS00690 PROSITE:PS51193 SMART:SM00491 INTERPRO:IPR013020
GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0006281 GO:GO:0051539 GO:GO:0004003 InterPro:IPR014001
SMART:SM00487 GO:GO:0010569 eggNOG:COG1199 TIGRFAMs:TIGR00604
HOGENOM:HOG000007558 KO:K11136 OMA:PFPPLKD OrthoDB:EOG4S4MX7
EMBL:DS231864 RefSeq:XP_001845338.1 ProteinModelPortal:B0W9F4
EnsemblMetazoa:CPIJ003765-RA GeneID:6035102
KEGG:cqu:CpipJ_CPIJ003765 VectorBase:CPIJ003765 PhylomeDB:B0W9F4
Uniprot:B0W9F4
Length = 978
Score = 350 (128.3 bits), Expect = 1.6e-51, Sum P(4) = 1.6e-51
Identities = 124/522 (23%), Positives = 231/522 (44%)
Query: 323 RNEISQQGALDIEDLVHLGRHMRTCPYYGSRSMVPTADLVVLPYQSLLSKSARESLGLNL 382
R EI+ +DIEDLV + ++ CP++ S+ ++ AD++ +PY LL AR++ L L
Sbjct: 198 RPEITGSTIMDIEDLVRVSTKLKACPFFMSKELIENADVLFMPYNYLLDPKARKANNLEL 257
Query: 383 KNNIVIIDEAHNLADSLINMYNAKITLSQL----ENVHSHLEKYFGRFCSLLGPGNRRYI 438
N I+I+DEAHN+ + +I S + ++V S + K ++ + +
Sbjct: 258 ANTIIILDEAHNVDKMCEESASMQIRSSDIALCIDDVTS-IMKVMDNTVAIPEDDDAKKD 316
Query: 439 QTL--MVFTRAFLQVLLKEKDENDVRQDSENSTG-AKHAFD--SSVAINEFLFSLNIDNI 493
T+ + + L L K DE V ST + F+ I E + + +
Sbjct: 317 FTIDDLALLKEMLLSLEKTVDEIPVMFSQGGSTQPGTYIFEIFEKANIKEGNYHIIAQLL 376
Query: 494 -NLVKLLKYIKE-SNIIHKVSGYGDKAASLQKGSVLKDG-GENYEEGSILSGFQSLVDM- 549
N+++ + I E +N + + G A SL S++ G G Y E SI ++ +D+
Sbjct: 377 ENIIQYIATITEKNNFVRRGGGLQILAESL---SIMFAGSGPQYRE-SIDKCYKCHIDIE 432
Query: 550 ---LISLTNNDGDGRIIISKARPISSXXXXXXXXYLKYVMLTGEKVFSEIVEQAHAVILA 606
+ DG + P S + + G + + A ++IL
Sbjct: 433 EQKKVRGNTKQADGWTATKQLVP-SVKANAKVINF--WCFNPGFGMRQLLGRNARSIILT 489
Query: 607 GGTLQPIEETRERLFPWLSPNKFHFFSCSHIVPPESILPVALSCGPTGKXXXXXXXXXXX 666
GTL P++ L ++ HI+ + + GP +
Sbjct: 490 SGTLAPLKPLISELDIPIAVK----LENPHIIDGSQVCVKIVGQGPDKESLNSSYGNRDN 545
Query: 667 XAMIEELGLLLCNLVSVVPEGIIVFFPSFEYVERVYGAWKSLGILDRIMKKKHVFREPRG 726
I LG + + ++P G++VFFPS+ + + AW+ GI +I + K +F EPRG
Sbjct: 546 PKYISSLGRTILSFCPIIPGGLLVFFPSYPLLNKCQEAWQETGIWAQISRTKPIFVEPRG 605
Query: 727 NTHVESVLKEYQKTIDTLSSRPKEDSTPLNGAMLLAVVGGKISEGINFSDGMGRCIVMVG 786
+ + EY I+ + GA+ +AV GK+SEG++F+D GR ++ G
Sbjct: 606 KDQFLNTMTEYYAKINDPDGK---------GAVFMAVCRGKVSEGLDFADMNGRACIITG 656
Query: 787 LPYPSPSNIELLERIKHIEGLGDTNSKTLNTSASDAYYNGDA 828
LP+P + ++ + ++++ + ++ ++ D +Y+ +A
Sbjct: 657 LPFPPLKDARVILKKRYLQEVRTRENEIIS---GDEWYSLEA 695
Score = 127 (49.8 bits), Expect = 1.6e-51, Sum P(4) = 1.6e-51
Identities = 22/44 (50%), Positives = 32/44 (72%)
Query: 20 YSIQTDFMKALYCSLENGGVSMLESPTGTGKTLSIICSALQWVV 63
Y +Q D+M + L+N +LESPTGTGKTLS++CS+L W++
Sbjct: 18 YQVQRDYMARVIECLQNSSNGVLESPTGTGKTLSLLCSSLAWIL 61
Score = 127 (49.8 bits), Expect = 1.6e-51, Sum P(4) = 1.6e-51
Identities = 32/81 (39%), Positives = 46/81 (56%)
Query: 842 GKEYYENLCMKAVNQSIGRAIRHINDHAAILLVDLRYASESSKRSCSHPANKLPRWIKDR 901
G E+Y +AVNQ+IGR IRH ND+ AILL D R+ + K +L WI+
Sbjct: 687 GDEWYSLEAARAVNQAIGRVIRHKNDYGAILLCDNRFHNPRQKA-------QLSSWIQKH 739
Query: 902 LVSSTN-NYGEVHRLLHQFFK 921
L ++ + +G + R L QFF+
Sbjct: 740 LNTAQHPTFGPIVRELSQFFR 760
Score = 107 (42.7 bits), Expect = 1.6e-51, Sum P(4) = 1.6e-51
Identities = 24/58 (41%), Positives = 37/58 (63%)
Query: 219 VLKVYFCSRTHSQLSQFIKELRKTVFANEIKVVCLGSRKNFCINEEVLRL-GNSTHIN 275
V K+ + SRTHSQL+Q ++E++ T + ++ V LGSR CI+ EV + GN+ N
Sbjct: 119 VPKIIYASRTHSQLTQAMQEMKNTSYGF-MRAVILGSRDQLCIHPEVAKEEGNAVKTN 175
>UNIPROTKB|Q9BX63 [details] [associations]
symbol:BRIP1 "Fanconi anemia group J protein" species:9606
"Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0051539 "4 iron, 4 sulfur
cluster binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA;NAS] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=NAS] [GO:0003677 "DNA binding" evidence=NAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0000077 "DNA damage checkpoint"
evidence=NAS] [GO:0006302 "double-strand break repair"
evidence=NAS] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=IDA] [GO:0031965 "nuclear membrane" evidence=IDA]
InterPro:IPR006555 InterPro:IPR010614 InterPro:IPR014013
Pfam:PF06733 Pfam:PF13307 PROSITE:PS00690 PROSITE:PS51193
SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0005737
GO:GO:0000077 GO:GO:0046872 GO:GO:0003677 GO:GO:0031965
GO:GO:0006357 GO:GO:0051539 GO:GO:0004003 GO:GO:0006302 MIM:114480
InterPro:IPR014001 SMART:SM00487 CleanEx:HS_BACH1 Orphanet:145
PDB:1T29 PDBsum:1T29 MIM:227650 Orphanet:84 eggNOG:COG1199
TIGRFAMs:TIGR00604 CTD:83990 HOGENOM:HOG000068083
HOVERGEN:HBG081519 KO:K15362 OrthoDB:EOG4J6RQ8 EMBL:AF360549
EMBL:AC002994 EMBL:AC005969 EMBL:AC060798 EMBL:BC101472
EMBL:BC101474 EMBL:AK074713 IPI:IPI00012500 IPI:IPI00514398
RefSeq:NP_114432.2 UniGene:Hs.128903 PDB:3AL3 PDBsum:3AL3
ProteinModelPortal:Q9BX63 SMR:Q9BX63 DIP:DIP-41787N IntAct:Q9BX63
MINT:MINT-275883 STRING:Q9BX63 PhosphoSite:Q9BX63 DMDM:57012613
PaxDb:Q9BX63 PRIDE:Q9BX63 DNASU:83990 Ensembl:ENST00000259008
GeneID:83990 KEGG:hsa:83990 UCSC:uc002izk.2 GeneCards:GC17M059759
H-InvDB:HIX0202529 HGNC:HGNC:20473 HPA:HPA005474 MIM:605882
MIM:609054 neXtProt:NX_Q9BX63 PharmGKB:PA134906421
InParanoid:Q9BX63 EvolutionaryTrace:Q9BX63 GenomeRNAi:83990
NextBio:73148 ArrayExpress:Q9BX63 Bgee:Q9BX63 CleanEx:HS_BRIP1
Genevestigator:Q9BX63 GermOnline:ENSG00000136492 Uniprot:Q9BX63
Length = 1249
Score = 244 (91.0 bits), Expect = 2.9e-51, Sum P(5) = 2.9e-51
Identities = 63/248 (25%), Positives = 120/248 (48%)
Query: 556 NDGDGRIIISKARPISSXXXXXXXXYLKYVMLTGEKVFSEIVEQAHAVILAGGTLQPIEE 615
+D +G +++ K + S L + L FS+I + ++L GTL P++
Sbjct: 565 SDKNGLLVLPKNKKRSRQKTAVHV--LNFWCLNPAVAFSDINGKVQTIVLTSGTLSPMKS 622
Query: 616 TRERLFPWLSPNKFHFFSCSHIVPPESILPVALSCGPTGKXXXXXXXXXXXXAMIEELGL 675
L + +HI+ + + GP G+ +E+G
Sbjct: 623 FSSELGVTFTIQ----LEANHIIKNSQVWVGTIGSGPKGRNLCATFQNTETFEFQDEVGA 678
Query: 676 LLCNLVSVVPEGIIVFFPSFEYVERVYGAWKSLGILDRIMKKKHVFREPRGN--THVESV 733
LL ++ V +GI+ F PS++ +E++ W S G+ + K V EP+G T+ + +
Sbjct: 679 LLLSVCQTVSQGILCFLPSYKLLEKLKERWLSTGLWHNLELVKTVIVEPQGGEKTNFDEL 738
Query: 734 LKEYQKTIDTLSSRPKEDSTPLNGAMLLAVVGGKISEGINFSDGMGRCIVMVGLPYPSPS 793
L+ Y D + + ++D GA+L+AV GK+SEG++FSD R ++ +G+P+P+
Sbjct: 739 LQVYY---DAIKYKGEKD-----GALLVAVCRGKVSEGLDFSDDNARAVITIGIPFPNVK 790
Query: 794 NIEL-LER 800
++++ L+R
Sbjct: 791 DLQVELKR 798
Score = 198 (74.8 bits), Expect = 2.9e-51, Sum P(5) = 2.9e-51
Identities = 38/90 (42%), Positives = 54/90 (60%)
Query: 331 ALDIEDLVHLGRHMRTCPYYGSRSMVPTADLVVLPYQSLLSKSARESLGLNLKNNIVIID 390
A DIE+LV LG+ ++ CPYY +R ++ AD++ PY LL RES+ LNLK +VI+D
Sbjct: 334 AWDIEELVSLGKKLKACPYYTARELIQDADIIFCPYNYLLDAQIRESMDLNLKEQVVILD 393
Query: 391 EAHNLADSLINMYNAKITLSQLENVHSHLE 420
EAHN+ D + +T QL L+
Sbjct: 394 EAHNIEDCARESASYSVTEVQLRFARDELD 423
Score = 125 (49.1 bits), Expect = 2.9e-51, Sum P(5) = 2.9e-51
Identities = 25/61 (40%), Positives = 41/61 (67%)
Query: 221 KVYFCSRTHSQLSQFIKELRKTVFANEIKVVCLGSRKNFCINEEVLRLGNSTHINERCLE 280
K+YF +RTH Q++Q +ELR+T ++ + + L SR + C++ EV+ GN NE+C+E
Sbjct: 245 KIYFGTRTHKQIAQITRELRRTAYSG-VPMTILSSRDHTCVHPEVV--GNFNR-NEKCME 300
Query: 281 L 281
L
Sbjct: 301 L 301
Score = 108 (43.1 bits), Expect = 2.9e-51, Sum P(5) = 2.9e-51
Identities = 21/61 (34%), Positives = 39/61 (63%)
Query: 842 GKEYYENLCMKAVNQSIGRAIRHINDHAAILLVDLRYASESSKRSCSHPANKLPRWIKDR 901
G+++YE +A+NQ++GR IRH ND A++LVD R+ + S+ + L +W++ +
Sbjct: 813 GRQWYEIQAYRALNQALGRCIRHRNDWGALILVDDRFRNNPSRY-----ISGLSKWVRQQ 867
Query: 902 L 902
+
Sbjct: 868 I 868
Score = 93 (37.8 bits), Expect = 2.9e-51, Sum P(5) = 2.9e-51
Identities = 18/42 (42%), Positives = 27/42 (64%)
Query: 20 YSIQTDFMKALYCSLENGGVSMLESPTGTGKTLSIICSALQW 61
Y Q M ++ L + +LESPTG+GK+L+++CSAL W
Sbjct: 22 YPSQLAMMNSILRGLNSKQHCLLESPTGSGKSLALLCSALAW 63
>UNIPROTKB|D4ACW5 [details] [associations]
symbol:Brip1 "Protein Brip1" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR006555 InterPro:IPR010614 InterPro:IPR014013
Pfam:PF06733 Pfam:PF13307 PROSITE:PS51193 SMART:SM00491 RGD:1307659
INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0003677 GO:GO:0006357 GO:GO:0004003 InterPro:IPR014001
SMART:SM00487 TIGRFAMs:TIGR00604 OrthoDB:EOG4J6RQ8 IPI:IPI00372668
Ensembl:ENSRNOT00000038829 ArrayExpress:D4ACW5 Uniprot:D4ACW5
Length = 1170
Score = 241 (89.9 bits), Expect = 6.4e-51, Sum P(5) = 6.4e-51
Identities = 57/222 (25%), Positives = 110/222 (49%)
Query: 582 LKYVMLTGEKVFSEIVEQAHAVILAGGTLQPIEETRERLFPWLSPNKFHFFSCSHIVPPE 641
L + L FS+I ++ ++L GTL P++ L + +H++
Sbjct: 590 LNFWCLNPAVAFSDINDKVRTIVLTSGTLSPLKSFSSELGVTFNIQ----LEANHVISNS 645
Query: 642 SILPVALSCGPTGKXXXXXXXXXXXXAMIEELGLLLCNLVSVVPEGIIVFFPSFEYVERV 701
+ + GP G+ +E+G+LL ++ V +GI+ F PS++ +E++
Sbjct: 646 QVWVGTVGSGPKGRNLCATFQHTETFEFQDEVGMLLLSVCQTVSQGILCFLPSYKLLEKL 705
Query: 702 YGAWKSLGILDRIMKKKHVFREPRGN--THVESVLKEYQKTIDTLSSRPKEDSTPLNGAM 759
W G+ + K V EP+G T + +L+ Y D + + ++D GA+
Sbjct: 706 RERWIFTGLWHSLESVKTVIAEPQGGEKTDFDELLQVYY---DAIKFKGEKD-----GAL 757
Query: 760 LLAVVGGKISEGINFSDGMGRCIVMVGLPYPSPSNIEL-LER 800
L+AV GK+SEG++FSD R ++ +G+P+P+ ++++ L+R
Sbjct: 758 LIAVCRGKVSEGLDFSDDNARAVITIGIPFPNVKDLQVELKR 799
Score = 193 (73.0 bits), Expect = 6.4e-51, Sum P(5) = 6.4e-51
Identities = 39/99 (39%), Positives = 59/99 (59%)
Query: 322 FRNEISQQGALDIEDLVHLGRHMRTCPYYGSRSMVPTADLVVLPYQSLLSKSARESLGLN 381
F + IS+ A DIE+LV LGR ++ CPYY +R ++ +AD++ PY LL RES+ +
Sbjct: 328 FLHGISK--AWDIEELVSLGRKLKACPYYTARELIDSADIIFCPYNYLLDSQIRESMDIK 385
Query: 382 LKNNIVIIDEAHNLADSLINMYNAKITLSQLENVHSHLE 420
LK +VI+DEAHN+ + + +T QL L+
Sbjct: 386 LKEQVVILDEAHNIEECARETASYSVTEVQLRFARDELD 424
Score = 128 (50.1 bits), Expect = 6.4e-51, Sum P(5) = 6.4e-51
Identities = 26/61 (42%), Positives = 41/61 (67%)
Query: 221 KVYFCSRTHSQLSQFIKELRKTVFANEIKVVCLGSRKNFCINEEVLRLGNSTHINERCLE 280
K+YF +RTH Q++Q +ELRKT ++ + + L SR + C++ EV+ GN NE+C+E
Sbjct: 246 KIYFGTRTHKQIAQITRELRKTAYSG-VPMTILSSRDHTCVHPEVV--GNFNR-NEKCME 301
Query: 281 L 281
L
Sbjct: 302 L 302
Score = 105 (42.0 bits), Expect = 6.4e-51, Sum P(5) = 6.4e-51
Identities = 25/80 (31%), Positives = 45/80 (56%)
Query: 842 GKEYYENLCMKAVNQSIGRAIRHINDHAAILLVDLRYASESSKRSCSHPANKLPRWIKDR 901
G+++YE +A+NQ++GR IRH ND A++LVD R+ + + R S L +W++ +
Sbjct: 814 GRQWYEIQAYRALNQALGRCIRHKNDWGALILVDDRF-NNNPDRYISG----LSKWVRQQ 868
Query: 902 LVSSTNNYGEVHRLLHQFFK 921
+ + + L +F K
Sbjct: 869 -IQHHSTFASALESLTEFSK 887
Score = 96 (38.9 bits), Expect = 6.4e-51, Sum P(5) = 6.4e-51
Identities = 18/42 (42%), Positives = 27/42 (64%)
Query: 20 YSIQTDFMKALYCSLENGGVSMLESPTGTGKTLSIICSALQW 61
Y Q M ++ L + +LESPTG+GK+L+++CSAL W
Sbjct: 22 YPAQLAMMNSIVRGLNSSQHCLLESPTGSGKSLALLCSALAW 63
>UNIPROTKB|Q7QEI1 [details] [associations]
symbol:AGAP000634 "Regulator of telomere elongation
helicase 1 homolog" species:7165 "Anopheles gambiae" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0005524
"ATP binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0010569 "regulation of double-strand break repair via
homologous recombination" evidence=ISS] InterPro:IPR006555
InterPro:IPR010614 InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307
PROSITE:PS00690 PROSITE:PS51193 SMART:SM00491 INTERPRO:IPR013020
GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0006281 GO:GO:0051539 GO:GO:0004003 InterPro:IPR014001
SMART:SM00487 GO:GO:0010569 eggNOG:COG1199 TIGRFAMs:TIGR00604
EMBL:AAAB01008847 HOGENOM:HOG000007558 KO:K11136 OrthoDB:EOG4S4MX7
RefSeq:XP_311162.5 GeneID:1272449 KEGG:aga:AgaP_AGAP000634
VectorBase:AGAP000634 CTD:1272449 PhylomeDB:Q7QEI1 Uniprot:Q7QEI1
Length = 991
Score = 221 (82.9 bits), Expect = 6.5e-51, Sum P(5) = 6.5e-51
Identities = 53/212 (25%), Positives = 103/212 (48%)
Query: 595 EIVEQA-HAVILAGGTLQPIEETRERLFPWLSPNKFHFFSCSHIVPPESILPVALSCGPT 653
++V+ ++IL GTL P++ L ++ + HI+ + ++ GP
Sbjct: 468 QLVDSGTRSIILTSGTLAPLKPFISELSLPVAVS----LENPHIIARSQVYVKVITHGPD 523
Query: 654 GKXXXXXXXXXXXXAMIEELGLLLCNLVSVVPEGIIVFFPSFEYVERVYGAWKSLGILDR 713
I LG +L ++P G+++FFPS+ + + W++ GI +
Sbjct: 524 RVELNSSFKNRSNPEYIASLGRTALSLCPIIPGGLLIFFPSYPLLNKCSEEWQASGIWGQ 583
Query: 714 IMKKKHVFREPRGNTHVESVLKEYQKTIDTLSSRPKEDSTPLNGAMLLAVVGGKISEGIN 773
I + K +F EPRG + + EY + +SR GA+ +AV GK+SEG++
Sbjct: 584 ISRLKQIFVEPRGKDQFTTTMAEYYAQVRDPASR---------GAIFMAVCRGKVSEGLD 634
Query: 774 FSDGMGRCIVMVGLPYPSPSNIELLERIKHIE 805
F+D GR +++ GLP+P + ++ + ++++
Sbjct: 635 FADANGRAVMITGLPFPPMMDARVVLKKQYLD 666
Score = 204 (76.9 bits), Expect = 6.5e-51, Sum P(5) = 6.5e-51
Identities = 59/208 (28%), Positives = 103/208 (49%)
Query: 323 RNEISQQGALDIEDLVHLGRHMRTCPYYGSRSMVPTADLVVLPYQSLLSKSARESLGLNL 382
R +++ +DIEDLV +GR ++ CPYY S+ +V AD++ +PY LL AR+S GL+L
Sbjct: 187 RPDVATVPVMDIEDLVTVGRKLKACPYYLSKELVEQADVIFMPYNYLLDPKARKSNGLSL 246
Query: 383 KNNIVIIDEAHNLADSLINMYNAKITLSQL----ENVHSHLEKYFGRFCSLLGPGNRRYI 438
+N ++I+DEAHN+ + +A + S + E+ S ++ + G G ++
Sbjct: 247 QNTVIILDEAHNVEKMCEEVGSALLRSSDIALAIEDTSSVIKSMMDGGGAWTGDGEKQLE 306
Query: 439 QTL--MVFTRAFLQVLLKEKDENDVRQDSENSTG-AKHAFDSSVAINEFLFSLNIDNINL 495
TL +V + L + K D+ + +T + FD N + NIN+
Sbjct: 307 LTLDDLVLLKEILLGVEKAVDDIPILFSQGGTTHPGTYIFDLLEKAN-----IKFGNINV 361
Query: 496 V-KLLKYIKESNIIHKVSGYGDKAASLQ 522
V +++ + K G+ + A LQ
Sbjct: 362 VLQVMNSLITHITTEKTGGFVRRGAGLQ 389
Score = 116 (45.9 bits), Expect = 6.5e-51, Sum P(5) = 6.5e-51
Identities = 22/45 (48%), Positives = 34/45 (75%)
Query: 20 YSIQTDFM-KALYCSLENGGVSMLESPTGTGKTLSIICSALQWVV 63
Y +Q ++M K + C L+N +LESPTGTGKTLS++CS++ W++
Sbjct: 18 YELQKNYMAKVIEC-LQNKTNGVLESPTGTGKTLSLLCSSMAWLL 61
Score = 113 (44.8 bits), Expect = 6.5e-51, Sum P(5) = 6.5e-51
Identities = 29/82 (35%), Positives = 47/82 (57%)
Query: 842 GKEYYENLCMKAVNQSIGRAIRHINDHAAILLVDLRYASESSKRSCSHPANKLPRWIKDR 901
G ++Y +AVNQ+IGR IRH +D+ AILL D R+ +++++ +L WI
Sbjct: 678 GNDWYSLEASRAVNQAIGRVIRHKDDYGAILLCDSRF--QNARQQA-----QLSAWIHSH 730
Query: 902 L--VSSTNNYGEVHRLLHQFFK 921
L S+ N+G V + +FF+
Sbjct: 731 LRESSAVPNFGTVVGEMSRFFR 752
Score = 106 (42.4 bits), Expect = 6.5e-51, Sum P(5) = 6.5e-51
Identities = 22/61 (36%), Positives = 37/61 (60%)
Query: 220 LKVYFCSRTHSQLSQFIKELRKTVFANEIKVVCLGSRKNFCINEEVLRLGNSTHINERCL 279
+K+ + SRTHSQLSQ ++EL+ T + ++ + LGSR CI+ ++ + N+ C
Sbjct: 109 MKIIYASRTHSQLSQAMQELKNTSYLF-VRSIILGSRDQLCIHPDISKQENNAIKTVLCR 167
Query: 280 E 280
E
Sbjct: 168 E 168
Score = 38 (18.4 bits), Expect = 6.7e-08, Sum P(3) = 6.7e-08
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 427 CSLLGPGNRRYIQTLMVFTR 446
CSL + ++Q+L V+ R
Sbjct: 918 CSLSAGSYKTFLQSLAVYNR 937
>ZFIN|ZDB-GENE-050306-11 [details] [associations]
symbol:rtel1 "regulator of telomere elongation
helicase 1" species:7955 "Danio rerio" [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0006139 "nucleobase-containing compound
metabolic process" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0016817
"hydrolase activity, acting on acid anhydrides" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR006555
InterPro:IPR010614 InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307
PROSITE:PS51193 SMART:SM00491 INTERPRO:IPR013020
ZFIN:ZDB-GENE-050306-11 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0004003 InterPro:IPR014001 SMART:SM00487 TIGRFAMs:TIGR00604
GeneTree:ENSGT00530000063199 KO:K11136 CTD:51750 EMBL:BX004876
IPI:IPI01016862 RefSeq:NP_001013328.2 UniGene:Dr.87074
ProteinModelPortal:F1QNW3 Ensembl:ENSDART00000123445 GeneID:503732
KEGG:dre:503732 NextBio:20866277 Bgee:F1QNW3 Uniprot:F1QNW3
Length = 1177
Score = 235 (87.8 bits), Expect = 7.6e-51, Sum P(5) = 7.6e-51
Identities = 60/209 (28%), Positives = 99/209 (47%)
Query: 598 EQAHAVILAGGTLQPIEE-TRERLFPWLSPNKFHFFSCSHIVPPESILPVALSCGPTGKX 656
++ +IL GTL P+ T E P+ P H++ + I + GP G
Sbjct: 469 QEVRCIILTSGTLSPLSSFTCEMQIPF--PVSLEN---PHVIQRDQIFVSIIEKGPDGVQ 523
Query: 657 XXXXXXXXXXXAMIEELGLLLCNLVSVVPEGIIVFFPSFEYVERVYGAWKSLGILDRIMK 716
+ +G L NL VVP G++VFFPS+ +++ W++ G DRI
Sbjct: 524 LSTAFDRRFVPENMSSMGNTLVNLSRVVPHGLLVFFPSYPVMDKTLEFWRAKGHADRIEN 583
Query: 717 KKHVFREPRGNTHVESVLKEYQKTIDTLSSRPKEDSTPLNGAMLLAVVGGKISEGINFSD 776
K +F EPRG V+ Y +D +S +G AV GK SEG++F+D
Sbjct: 584 VKPMFVEPRGKGTFTEVIDGYYGKVDDPNS---------SGGSFFAVCRGKASEGLDFAD 634
Query: 777 GMGRCIVMVGLPYPSPSNIELLERIKHIE 805
GR +V+ GLP+P + ++ ++++++
Sbjct: 635 TYGRGVVITGLPFPPRMDPRVVLKMQYLD 663
Score = 169 (64.5 bits), Expect = 7.6e-51, Sum P(5) = 7.6e-51
Identities = 37/93 (39%), Positives = 52/93 (55%)
Query: 303 RTKAFSGCPVLRSHKLQKGFRNEISQQGALDIEDLVHLGRHMRTCPYYGSRSMVPTADLV 362
R K S + ++ +K EI LD+EDLV G+ R CPYY SRS+ AD++
Sbjct: 164 RAKVSSRSCIFYNNVDEKSTDKEIVNS-ILDVEDLVKTGKKQRVCPYYLSRSLKQHADVI 222
Query: 363 VLPYQSLLSKSARESLGLNLKNNIVIIDEAHNL 395
+PY LL +R + + LK +VI DEAHN+
Sbjct: 223 FMPYNYLLDPKSRRAHNIELKGAVVIFDEAHNV 255
Score = 131 (51.2 bits), Expect = 7.6e-51, Sum P(5) = 7.6e-51
Identities = 30/80 (37%), Positives = 46/80 (57%)
Query: 842 GKEYYENLCMKAVNQSIGRAIRHINDHAAILLVDLRYASESSKRSCSHPANKLPRWIKDR 901
G+E+Y +AVNQ+IGR IRH D+ AI L D R+ S ++ N+LP W++
Sbjct: 678 GQEWYRQQASRAVNQAIGRVIRHREDYGAIFLCDHRFKSADAR-------NQLPSWVRP- 729
Query: 902 LVSSTNNYGEVHRLLHQFFK 921
V + +G + R + QFF+
Sbjct: 730 YVKIYDGFGTMVRDVAQFFR 749
Score = 124 (48.7 bits), Expect = 7.6e-51, Sum P(5) = 7.6e-51
Identities = 27/54 (50%), Positives = 37/54 (68%)
Query: 221 KVYFCSRTHSQLSQFIKELRKTVFANEIKVVCLGSRKNFCINEEVLRLGNSTHI 274
K+ + SRTHSQL+Q + EL+ T + +I V LGSR+ CIN+EV+R S HI
Sbjct: 108 KIIYASRTHSQLTQVVNELKNTSYRPKICV--LGSREQLCINQEVMR-HESNHI 158
Score = 104 (41.7 bits), Expect = 7.6e-51, Sum P(5) = 7.6e-51
Identities = 22/43 (51%), Positives = 28/43 (65%)
Query: 20 YSIQTDFM-KALYCSLENGGVSMLESPTGTGKTLSIICSALQW 61
Y Q D+M K + C L+ +LESPTGTGKTL ++CS L W
Sbjct: 18 YPCQEDYMSKVIEC-LQKKVNGVLESPTGTGKTLCLLCSTLAW 59
Score = 37 (18.1 bits), Expect = 3.3e-41, Sum P(5) = 3.3e-41
Identities = 7/32 (21%), Positives = 14/32 (43%)
Query: 833 GILRSCRGRGKEYYENLCMKAVNQSIGRAIRH 864
G+ + R K+ Y+ C++ + G H
Sbjct: 962 GLYQFIRPHHKKEYDERCLELTGEGCGYKQEH 993
>MGI|MGI:2442836 [details] [associations]
symbol:Brip1 "BRCA1 interacting protein C-terminal helicase
1" species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004003 "ATP-dependent
DNA helicase activity" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0006139 "nucleobase-containing compound metabolic
process" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=ISO] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0016817 "hydrolase activity, acting on acid
anhydrides" evidence=IEA] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0051536 "iron-sulfur cluster binding" evidence=IEA] [GO:0051539
"4 iron, 4 sulfur cluster binding" evidence=IEA] InterPro:IPR006555
InterPro:IPR010614 InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307
PROSITE:PS00690 PROSITE:PS51193 SMART:SM00491 MGI:MGI:2442836
INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0046872 GO:GO:0003677 GO:GO:0006281 GO:GO:0006357
GO:GO:0051539 GO:GO:0004003 InterPro:IPR014001 SMART:SM00487
CleanEx:MM_BACH1 eggNOG:COG1199 TIGRFAMs:TIGR00604
GeneTree:ENSGT00530000063199 CTD:83990 HOGENOM:HOG000068083
HOVERGEN:HBG081519 KO:K15362 OrthoDB:EOG4J6RQ8 EMBL:AL592465
EMBL:AL592065 EMBL:AL645690 EMBL:BC094252 EMBL:AK051878
EMBL:AK080771 IPI:IPI00319607 RefSeq:NP_840094.1 UniGene:Mm.186143
ProteinModelPortal:Q5SXJ3 SMR:Q5SXJ3 STRING:Q5SXJ3
PhosphoSite:Q5SXJ3 PRIDE:Q5SXJ3 Ensembl:ENSMUST00000044423
GeneID:237911 KEGG:mmu:237911 UCSC:uc007ksf.2 InParanoid:Q5SXJ3
OMA:GVHKISD ChiTaRS:BRIP1 NextBio:383570 Bgee:Q5SXJ3
CleanEx:MM_BRIP1 Genevestigator:Q5SXJ3
GermOnline:ENSMUSG00000034329 Uniprot:Q5SXJ3
Length = 1174
Score = 245 (91.3 bits), Expect = 7.6e-51, Sum P(5) = 7.6e-51
Identities = 59/222 (26%), Positives = 110/222 (49%)
Query: 582 LKYVMLTGEKVFSEIVEQAHAVILAGGTLQPIEETRERLFPWLSPNKFHFFSCSHIVPPE 641
L + L FS+I ++ ++L GTL P++ L S +H++
Sbjct: 592 LNFWCLNPAVAFSDINDKVRTIVLTSGTLSPLKSFSSELGVTFSIQ----LEANHVISNS 647
Query: 642 SILPVALSCGPTGKXXXXXXXXXXXXAMIEELGLLLCNLVSVVPEGIIVFFPSFEYVERV 701
+ + GP G+ +E+G+LL ++ V +GI+ F PS++ +E++
Sbjct: 648 QVWVGTVGSGPKGRNLCATFQHTETFEFQDEVGMLLLSVCQTVSQGILCFLPSYKLLEKL 707
Query: 702 YGAWKSLGILDRIMKKKHVFREPRGN--THVESVLKEYQKTIDTLSSRPKEDSTPLNGAM 759
W G+ + K V EP+G T + +L+ Y D + + ++D GA+
Sbjct: 708 RERWIFTGLWHSLESVKTVIAEPQGGEKTDFDELLQVYY---DAIKFKGEKD-----GAL 759
Query: 760 LLAVVGGKISEGINFSDGMGRCIVMVGLPYPSPSNIEL-LER 800
L+AV GK+SEG++FSD R ++ VG+P+P+ ++++ L+R
Sbjct: 760 LIAVCRGKVSEGLDFSDDNARAVITVGIPFPNVKDLQVELKR 801
Score = 194 (73.4 bits), Expect = 7.6e-51, Sum P(5) = 7.6e-51
Identities = 40/107 (37%), Positives = 60/107 (56%)
Query: 316 HKL--QKGFRNEISQQGALDIEDLVHLGRHMRTCPYYGSRSMVPTADLVVLPYQSLLSKS 373
HK+ Q+ ++ A DIE+LV LGR ++ CPYY +R ++ AD+V PY LL
Sbjct: 320 HKISNQQTLQHLQGMSRAWDIEELVSLGRKLKACPYYTARELIEDADIVFCPYNYLLDSQ 379
Query: 374 ARESLGLNLKNNIVIIDEAHNLADSLINMYNAKITLSQLENVHSHLE 420
RE++ + LK +VI+DEAHN+ D + +T QL L+
Sbjct: 380 IRETMDIKLKGQVVILDEAHNIEDCARESASYSVTEVQLRFARDELD 426
Score = 122 (48.0 bits), Expect = 7.6e-51, Sum P(5) = 7.6e-51
Identities = 25/61 (40%), Positives = 40/61 (65%)
Query: 221 KVYFCSRTHSQLSQFIKELRKTVFANEIKVVCLGSRKNFCINEEVLRLGNSTHINERCLE 280
K+YF +RTH Q++Q +ELRKT ++ + + L SR + C++ EV+ GN E+C+E
Sbjct: 248 KIYFGTRTHKQIAQITRELRKTAYSG-VPMTILSSRDHSCVHPEVV--GNFNR-KEKCME 303
Query: 281 L 281
L
Sbjct: 304 L 304
Score = 105 (42.0 bits), Expect = 7.6e-51, Sum P(5) = 7.6e-51
Identities = 22/61 (36%), Positives = 39/61 (63%)
Query: 842 GKEYYENLCMKAVNQSIGRAIRHINDHAAILLVDLRYASESSKRSCSHPANKLPRWIKDR 901
G+++YE +A+NQ++GR IRH ND A++LVD R+ + + R S L +W++ +
Sbjct: 816 GRQWYEIQAYRALNQALGRCIRHKNDWGALILVDDRF-NNNPNRYISG----LSKWVRQQ 870
Query: 902 L 902
+
Sbjct: 871 I 871
Score = 96 (38.9 bits), Expect = 7.6e-51, Sum P(5) = 7.6e-51
Identities = 18/42 (42%), Positives = 27/42 (64%)
Query: 20 YSIQTDFMKALYCSLENGGVSMLESPTGTGKTLSIICSALQW 61
Y Q M ++ L + +LESPTG+GK+L+++CSAL W
Sbjct: 22 YPAQLAMMNSIVRGLNSSQHCLLESPTGSGKSLALLCSALAW 63
>UNIPROTKB|E1C1X9 [details] [associations]
symbol:BRIP1 "Fanconi anemia group J protein homolog"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR006554 InterPro:IPR006555
InterPro:IPR010614 InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307
PROSITE:PS51193 SMART:SM00488 SMART:SM00491 INTERPRO:IPR013020
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0004003
TIGRFAMs:TIGR00604 GeneTree:ENSGT00530000063199 EMBL:AADN02025783
IPI:IPI00820128 Ensembl:ENSGALT00000008466 ArrayExpress:E1C1X9
Uniprot:E1C1X9
Length = 1249
Score = 219 (82.2 bits), Expect = 3.1e-50, Sum P(5) = 3.1e-50
Identities = 57/223 (25%), Positives = 107/223 (47%)
Query: 582 LKYVMLTGEKVFSEIVEQAHAVILAGGTLQPIEETRERLFPWLSPNKFHF-FSCSHIVPP 640
L + L FS++ V+L GTL P++ L KF +H++
Sbjct: 600 LNFWCLNPAVAFSDL-NDVRTVVLTSGTLSPMDSFSSELGV-----KFSIQLEANHVIRN 653
Query: 641 ESILPVALSCGPTGKXXXXXXXXXXXXAMIEELGLLLCNLVSVVPEGIIVFFPSFEYVER 700
+ + GP G+ +E+G LL ++ V +GI+ F PS++ +++
Sbjct: 654 SQVWVGTIGTGPNGRKLCATFQHTETFEFQDEVGALLLSVCQKVGQGILCFLPSYKLLDK 713
Query: 701 VYGAWKSLGILDRIMKKKHVFREPRGN--THVESVLKEYQKTIDTLSSRPKEDSTPLNGA 758
+ W G+ + K V EP+G + + +LK Y D + + ++D GA
Sbjct: 714 LKDRWIHTGLWRNLELVKTVIAEPQGGAKSDFDELLKIYY---DAIKFKGEKD-----GA 765
Query: 759 MLLAVVGGKISEGINFSDGMGRCIVMVGLPYPSPSNIEL-LER 800
+L+AV GK+SEG++F D R ++ +G+P+P+ ++++ L+R
Sbjct: 766 LLIAVCRGKVSEGLDFCDENARAVITIGIPFPNVKDLQVELKR 808
Score = 213 (80.0 bits), Expect = 3.1e-50, Sum P(5) = 3.1e-50
Identities = 44/107 (41%), Positives = 63/107 (58%)
Query: 316 HKLQKGFRNEISQQG--ALDIEDLVHLGRHMRTCPYYGSRSMVPTADLVVLPYQSLLSKS 373
HKL + + + + A DIEDLV LG+ +R CPY+ +R ++ AD+V PY LL
Sbjct: 327 HKLSEHYALQSAHNTYQAWDIEDLVSLGKKLRACPYFAARELMVGADIVFCPYNYLLDPQ 386
Query: 374 ARESLGLNLKNNIVIIDEAHNLADSLINMYNAKITLSQLENVHSHLE 420
RES+ +NLK +VI+DEAHN+ DS + +T SQL L+
Sbjct: 387 IRESMEINLKGQVVILDEAHNIEDSAREAVSYSVTESQLNAAREELD 433
Score = 121 (47.7 bits), Expect = 3.1e-50, Sum P(5) = 3.1e-50
Identities = 28/83 (33%), Positives = 46/83 (55%)
Query: 842 GKEYYENLCMKAVNQSIGRAIRHINDHAAILLVDLRYASESSKRSCSHPANKLPRWIKDR 901
G ++YE +A+NQ++GR IRH +D A++LVD R+ + +K L +WI+ +
Sbjct: 823 GSQWYEIQAYRALNQALGRCIRHRSDWGALILVDDRFRNNPNKYITG-----LSKWIRQQ 877
Query: 902 LVSSTNNYGEVHRLLHQFFKFNK 924
V N+G LH F + N+
Sbjct: 878 -VQHHENFGSALESLHAFAERNQ 899
Score = 105 (42.0 bits), Expect = 3.1e-50, Sum P(5) = 3.1e-50
Identities = 23/61 (37%), Positives = 38/61 (62%)
Query: 221 KVYFCSRTHSQLSQFIKELRKTVFANEIKVVCLGSRKNFCINEEVLRLGNSTHINERCLE 280
K++F +RTH Q++Q +EL++T ++ + + L SR CI+ V+ NS NE C+E
Sbjct: 254 KIFFGTRTHKQIAQITRELKRTAYSG-VPMTILSSRDYTCIHP-VVSSSNSNR-NELCVE 310
Query: 281 L 281
L
Sbjct: 311 L 311
Score = 102 (41.0 bits), Expect = 3.1e-50, Sum P(5) = 3.1e-50
Identities = 20/42 (47%), Positives = 27/42 (64%)
Query: 20 YSIQTDFMKALYCSLENGGVSMLESPTGTGKTLSIICSALQW 61
Y Q M A+ L N +LESPTG+GK+L+++CSAL W
Sbjct: 22 YPSQLAMMNAIVKGLNNRQHCLLESPTGSGKSLALLCSALSW 63
Score = 47 (21.6 bits), Expect = 1.4e-08, Sum P(3) = 1.4e-08
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 793 SNIELLERIKHIEGLGDTNSKTLNTSAS 820
+N E +KH + L DT K NT AS
Sbjct: 115 NNYETGGSVKHGDQLSDTECKENNTLAS 142
Score = 45 (20.9 bits), Expect = 1.2e-26, Sum P(4) = 1.2e-26
Identities = 16/54 (29%), Positives = 28/54 (51%)
Query: 300 KVRRTKAFSGCPV-LRSHKLQKGFRNEISQQGALDIEDLVHL--GRHMRTCPYY 350
+++RT A+SG P+ + S + +S + E V L G+H ++C YY
Sbjct: 271 ELKRT-AYSGVPMTILSSRDYTCIHPVVSSSNSNRNELCVELLEGKHGKSCLYY 323
>UNIPROTKB|Q3YK19 [details] [associations]
symbol:BRIP1 "Fanconi anemia group J protein homolog"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0051539 "4 iron, 4 sulfur
cluster binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0031965 "nuclear
membrane" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0006281 "DNA repair" evidence=TAS] InterPro:IPR006554
InterPro:IPR006555 InterPro:IPR010614 InterPro:IPR014013
Pfam:PF06733 Pfam:PF13307 PROSITE:PS00690 PROSITE:PS51193
SMART:SM00488 SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524
GO:GO:0005737 GO:GO:0005654 GO:GO:0046872 GO:GO:0003677
GO:GO:0006281 GO:GO:0006357 GO:GO:0051539 GO:GO:0004003
Reactome:REACT_115612 eggNOG:COG1199 TIGRFAMs:TIGR00604
GeneTree:ENSGT00530000063199 EMBL:DQ109581 IPI:IPI00593256
RefSeq:NP_001028230.1 UniGene:Gga.17801 ProteinModelPortal:Q3YK19
STRING:Q3YK19 Ensembl:ENSGALT00000039225 GeneID:417642
KEGG:gga:417642 CTD:83990 HOGENOM:HOG000068083 HOVERGEN:HBG081519
InParanoid:Q3YK19 KO:K15362 OMA:GYETSCK OrthoDB:EOG4J6RQ8
NextBio:20820915 ArrayExpress:Q3YK19 Uniprot:Q3YK19
Length = 1252
Score = 219 (82.2 bits), Expect = 3.2e-50, Sum P(5) = 3.2e-50
Identities = 57/223 (25%), Positives = 107/223 (47%)
Query: 582 LKYVMLTGEKVFSEIVEQAHAVILAGGTLQPIEETRERLFPWLSPNKFHF-FSCSHIVPP 640
L + L FS++ V+L GTL P++ L KF +H++
Sbjct: 600 LNFWCLNPAVAFSDL-NDVRTVVLTSGTLSPMDSFSSELGV-----KFSIQLEANHVIRN 653
Query: 641 ESILPVALSCGPTGKXXXXXXXXXXXXAMIEELGLLLCNLVSVVPEGIIVFFPSFEYVER 700
+ + GP G+ +E+G LL ++ V +GI+ F PS++ +++
Sbjct: 654 SQVWVGTIGTGPNGRKLCATFQHTETFEFQDEVGALLLSVCQKVGQGILCFLPSYKLLDK 713
Query: 701 VYGAWKSLGILDRIMKKKHVFREPRGN--THVESVLKEYQKTIDTLSSRPKEDSTPLNGA 758
+ W G+ + K V EP+G + + +LK Y D + + ++D GA
Sbjct: 714 LKDRWIHTGLWRNLELVKTVIAEPQGGAKSDFDELLKIYY---DAIKFKGEKD-----GA 765
Query: 759 MLLAVVGGKISEGINFSDGMGRCIVMVGLPYPSPSNIEL-LER 800
+L+AV GK+SEG++F D R ++ +G+P+P+ ++++ L+R
Sbjct: 766 LLIAVCRGKVSEGLDFCDENARAVITIGIPFPNVKDLQVELKR 808
Score = 213 (80.0 bits), Expect = 3.2e-50, Sum P(5) = 3.2e-50
Identities = 44/107 (41%), Positives = 63/107 (58%)
Query: 316 HKLQKGFRNEISQQG--ALDIEDLVHLGRHMRTCPYYGSRSMVPTADLVVLPYQSLLSKS 373
HKL + + + + A DIEDLV LG+ +R CPY+ +R ++ AD+V PY LL
Sbjct: 327 HKLSEHYALQSAHNTYQAWDIEDLVSLGKKLRACPYFAARELMVGADIVFCPYNYLLDPQ 386
Query: 374 ARESLGLNLKNNIVIIDEAHNLADSLINMYNAKITLSQLENVHSHLE 420
RES+ +NLK +VI+DEAHN+ DS + +T SQL L+
Sbjct: 387 IRESMEINLKGQVVILDEAHNIEDSAREAVSYSVTESQLNAAREELD 433
Score = 121 (47.7 bits), Expect = 3.2e-50, Sum P(5) = 3.2e-50
Identities = 28/83 (33%), Positives = 46/83 (55%)
Query: 842 GKEYYENLCMKAVNQSIGRAIRHINDHAAILLVDLRYASESSKRSCSHPANKLPRWIKDR 901
G ++YE +A+NQ++GR IRH +D A++LVD R+ + +K L +WI+ +
Sbjct: 823 GSQWYEIQAYRALNQALGRCIRHRSDWGALILVDDRFRNNPNKYITG-----LSKWIRQQ 877
Query: 902 LVSSTNNYGEVHRLLHQFFKFNK 924
V N+G LH F + N+
Sbjct: 878 -VQHHENFGSALESLHAFAERNQ 899
Score = 105 (42.0 bits), Expect = 3.2e-50, Sum P(5) = 3.2e-50
Identities = 23/61 (37%), Positives = 38/61 (62%)
Query: 221 KVYFCSRTHSQLSQFIKELRKTVFANEIKVVCLGSRKNFCINEEVLRLGNSTHINERCLE 280
K++F +RTH Q++Q +EL++T ++ + + L SR CI+ V+ NS NE C+E
Sbjct: 254 KIFFGTRTHKQIAQITRELKRTAYSG-VPMTILSSRDYTCIHP-VVSSSNSNR-NELCVE 310
Query: 281 L 281
L
Sbjct: 311 L 311
Score = 102 (41.0 bits), Expect = 3.2e-50, Sum P(5) = 3.2e-50
Identities = 20/42 (47%), Positives = 27/42 (64%)
Query: 20 YSIQTDFMKALYCSLENGGVSMLESPTGTGKTLSIICSALQW 61
Y Q M A+ L N +LESPTG+GK+L+++CSAL W
Sbjct: 22 YPSQLAMMNAIVKGLNNRQHCLLESPTGSGKSLALLCSALSW 63
Score = 47 (21.6 bits), Expect = 1.4e-08, Sum P(3) = 1.4e-08
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 793 SNIELLERIKHIEGLGDTNSKTLNTSAS 820
+N E +KH + L DT K NT AS
Sbjct: 115 NNYETGGSVKHGDQLSDTECKENNTLAS 142
Score = 45 (20.9 bits), Expect = 1.2e-26, Sum P(4) = 1.2e-26
Identities = 16/54 (29%), Positives = 28/54 (51%)
Query: 300 KVRRTKAFSGCPV-LRSHKLQKGFRNEISQQGALDIEDLVHL--GRHMRTCPYY 350
+++RT A+SG P+ + S + +S + E V L G+H ++C YY
Sbjct: 271 ELKRT-AYSGVPMTILSSRDYTCIHPVVSSSNSNRNELCVELLEGKHGKSCLYY 323
>ZFIN|ZDB-GENE-081107-11 [details] [associations]
symbol:brip1 "BRCA1 interacting protein C-terminal
helicase 1" species:7955 "Danio rerio" [GO:0016817 "hydrolase
activity, acting on acid anhydrides" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0016818 "hydrolase activity, acting on acid anhydrides, in
phosphorus-containing anhydrides" evidence=IEA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=IEA] [GO:0006139
"nucleobase-containing compound metabolic process" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] InterPro:IPR006555
InterPro:IPR010614 InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307
PROSITE:PS51193 SMART:SM00491 INTERPRO:IPR013020
ZFIN:ZDB-GENE-081107-11 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0004003 InterPro:IPR014001 SMART:SM00487 eggNOG:COG1199
TIGRFAMs:TIGR00604 CTD:83990 HOGENOM:HOG000068083
HOVERGEN:HBG081519 KO:K15362 OrthoDB:EOG4J6RQ8 EMBL:EF088194
IPI:IPI00877443 RefSeq:NP_001103766.1 UniGene:Dr.85128
ProteinModelPortal:A8QLH7 STRING:A8QLH7 GeneID:794038
KEGG:dre:794038 NextBio:20931680 ArrayExpress:A8QLH7 Uniprot:A8QLH7
Length = 1217
Score = 254 (94.5 bits), Expect = 1.7e-49, Sum P(5) = 1.7e-49
Identities = 67/264 (25%), Positives = 125/264 (47%)
Query: 582 LKYVMLTGEKVFSEIVEQAHAVILAGGTLQPIEETRERLFPWLSPNKFHF-FSCSHIVPP 640
L + L FS++ +++L GTL P+ L KF +H++
Sbjct: 618 LSFWCLNPAVAFSDLSSTVRSIVLTSGTLSPMGSFSSEL-----GIKFSIQLEANHVINK 672
Query: 641 ESILPVALSCGPTGKXXXXXXXXXXXXAMIEELGLLLCNLVSVVPEGIIVFFPSFEYVER 700
+ + GP G+ A +E+G LL + V G++ F PS++ +++
Sbjct: 673 SQVWVGTIGAGPQGRKLCATFQHAETFAFQDEVGALLLKVCHTVSRGVLCFLPSYKMLDK 732
Query: 701 VYGAWKSLGILDRIMKKKHVFREPRGNTH--VESVLKEYQKTI-DTLSSRPKEDSTPLNG 757
+ W + G+ D++ + K V EPRG + +L+ Y + I T + K D G
Sbjct: 733 LRDRWTNTGLWDKLEECKTVITEPRGGGKGDFDELLQTYYEAIRGTAAKGEKRD-----G 787
Query: 758 AMLLAVVGGKISEGINFSDGMGRCIVMVGLPYPSPSNIELLERIKHIEGLGDTNSKTLNT 817
A+L+AV GK+SEG++F+D R +V +G+P+P+ ++++ ++K+ D ++K+
Sbjct: 788 ALLVAVCRGKVSEGLDFTDDNARAVVTIGIPFPNIKDLQVELKMKY----NDKHAKSRGL 843
Query: 818 SASDAYYNGDAQAGFGILRSCRGR 841
+Y + QA + L GR
Sbjct: 844 LPGGRWY--EIQA-YRALNQALGR 864
Score = 177 (67.4 bits), Expect = 1.7e-49, Sum P(5) = 1.7e-49
Identities = 37/83 (44%), Positives = 52/83 (62%)
Query: 331 ALDIEDLVHLGRHMRTCPYYGSRSMVPTADLVVLPYQSLLSKSARESLGLNLKNNIVIID 390
A DIE+LV LG +R+C YY +R ++ A +V PY LL RES+ +NLK IV++D
Sbjct: 362 AWDIEELVRLGGKLRSCAYYAARELMQEACIVFCPYNYLLDPLIRESMEINLKEQIVVLD 421
Query: 391 EAHNLADSLINMYNAKITLSQLE 413
EAHN+ D +A TL+Q +
Sbjct: 422 EAHNIEDCARE--SASFTLNQAQ 442
Score = 111 (44.1 bits), Expect = 1.7e-49, Sum P(5) = 1.7e-49
Identities = 22/60 (36%), Positives = 39/60 (65%)
Query: 221 KVYFCSRTHSQLSQFIKELRKTVFANEIKVVCLGSRKNFCINEEVLRLGNSTHINERCLE 280
K++F +RTH Q++Q +EL++T+++ + + L SR + C++ EV+ N NERC E
Sbjct: 273 KIFFGTRTHKQITQIARELKRTLYST-VPMTILSSRDHTCVHPEVVPHANR---NERCKE 328
Score = 106 (42.4 bits), Expect = 1.7e-49, Sum P(5) = 1.7e-49
Identities = 20/42 (47%), Positives = 28/42 (66%)
Query: 20 YSIQTDFMKALYCSLENGGVSMLESPTGTGKTLSIICSALQW 61
Y Q M ++ L NG +LESPTG+GK+L+++CSAL W
Sbjct: 22 YPSQLAMMNSIIRGLNNGQHCLLESPTGSGKSLALLCSALAW 63
Score = 101 (40.6 bits), Expect = 1.7e-49, Sum P(5) = 1.7e-49
Identities = 25/78 (32%), Positives = 42/78 (53%)
Query: 842 GKEYYENLCMKAVNQSIGRAIRHINDHAAILLVDLRYASESSKRSCSHPANKLPRWIKDR 901
G +YE +A+NQ++GR IRH ND A++LVD R+ + +K L +W++ +
Sbjct: 846 GGRWYEIQAYRALNQALGRCIRHRNDWGALILVDDRFRTNPNKYITG-----LSKWVR-Q 899
Query: 902 LVSSTNNYGEVHRLLHQF 919
LV + + + L F
Sbjct: 900 LVRHHDTFTGAMQSLESF 917
>UNIPROTKB|E1BTS7 [details] [associations]
symbol:Gga.49055 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR006554 InterPro:IPR006555 InterPro:IPR010614
InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307 PROSITE:PS51193
SMART:SM00488 SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004003 TIGRFAMs:TIGR00604
GeneTree:ENSGT00530000063199 EMBL:AADN02019151 EMBL:AADN02019152
EMBL:AADN02019153 IPI:IPI00819960 Ensembl:ENSGALT00000039433
ArrayExpress:E1BTS7 Uniprot:E1BTS7
Length = 1085
Score = 230 (86.0 bits), Expect = 1.1e-48, Sum P(5) = 1.1e-48
Identities = 68/236 (28%), Positives = 105/236 (44%)
Query: 595 EIVEQA-HAVILAGGTLQPIEE-TRERLFPWLSPNKFHFFSCSHIVPPESILPVALSCGP 652
E+V Q +IL GTL P+ T E P+ P H++ + + GP
Sbjct: 468 ELVRQGVRTIILTSGTLSPLSSFTMEMQIPF--PV---LLENPHVIDKRQLWVGIIPKGP 522
Query: 653 TGKXXXXXXXXXXXXAMIEELGLLLCNLVSVVPEGIIVFFPSFEYVERVYGAWKSLGILD 712
G + LG + NLV VVP G++VFFPS+ +++ W+
Sbjct: 523 DGTVLNSAYERRFSEDYLSSLGKTIGNLVRVVPHGLLVFFPSYPVMDKSLEYWREHDFAK 582
Query: 713 RIMKKKHVFREPRGNTHVESVLKEYQKTIDTLSSRPKEDSTPLNGAMLLAVVGGKISEGI 772
RI + K +F EPR V+ Y I + PK NGA LAV GK SEG+
Sbjct: 583 RIEEVKPMFVEPRNKGSFAEVMDAYYSKI----ACPKS-----NGAAFLAVCRGKASEGL 633
Query: 773 NFSDGMGRCIVMVGLPYPSPSNIELLERIKHIEGLGDTNSKTLNTSASDAYYNGDA 828
+F+D GR +++ GLP+P ++ +++ + + +N S +YN A
Sbjct: 634 DFADMNGRGVIITGLPFPPRWEPRVVLKMQFLNEMKKSNMGAQCLSGHQ-WYNQQA 688
Score = 164 (62.8 bits), Expect = 1.1e-48, Sum P(5) = 1.1e-48
Identities = 31/64 (48%), Positives = 42/64 (65%)
Query: 332 LDIEDLVHLGRHMRTCPYYGSRSMVPTADLVVLPYQSLLSKSARESLGLNLKNNIVIIDE 391
+DIEDLV G R CPYY SRS+ AD++ +PY LL +R + + LK +VI+DE
Sbjct: 192 MDIEDLVKNGSKHRACPYYLSRSLKQQADIIFMPYNYLLDAKSRRAHNIELKGTVVILDE 251
Query: 392 AHNL 395
AHN+
Sbjct: 252 AHNV 255
Score = 125 (49.1 bits), Expect = 1.1e-48, Sum P(5) = 1.1e-48
Identities = 28/80 (35%), Positives = 45/80 (56%)
Query: 842 GKEYYENLCMKAVNQSIGRAIRHINDHAAILLVDLRYASESSKRSCSHPANKLPRWIKDR 901
G ++Y +AVNQ+IGR IRH D+ AI L D R+ +++ + KLP W++
Sbjct: 680 GHQWYNQQASRAVNQAIGRVIRHRQDYGAIFLCDDRFTTDNVR-------GKLPSWVRP- 731
Query: 902 LVSSTNNYGEVHRLLHQFFK 921
V+ +N+G R + FF+
Sbjct: 732 YVNVYDNFGHAVRSVSVFFR 751
Score = 121 (47.7 bits), Expect = 1.1e-48, Sum P(5) = 1.1e-48
Identities = 28/54 (51%), Positives = 36/54 (66%)
Query: 221 KVYFCSRTHSQLSQFIKELRKTVFANEIKVVCLGSRKNFCINEEVLRLGNSTHI 274
K+ + SRTHSQL+Q I EL+ TV+ +I V LGSR+ CIN EV R S H+
Sbjct: 108 KIIYASRTHSQLTQVINELKNTVYRPKICV--LGSREQLCINPEVKRQ-ESNHM 158
Score = 100 (40.3 bits), Expect = 1.1e-48, Sum P(5) = 1.1e-48
Identities = 22/43 (51%), Positives = 27/43 (62%)
Query: 20 YSIQTDFM-KALYCSLENGGVSMLESPTGTGKTLSIICSALQW 61
Y Q +M K L C L+ +LESPTGTGKTL ++CS L W
Sbjct: 18 YECQETYMAKVLEC-LQTKVNGILESPTGTGKTLCLLCSTLAW 59
>MGI|MGI:2139369 [details] [associations]
symbol:Rtel1 "regulator of telomere elongation helicase 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000723 "telomere maintenance" evidence=IMP]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=ISO] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=ISO] [GO:0005634
"nucleus" evidence=IDA] [GO:0006139 "nucleobase-containing compound
metabolic process" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0010569 "regulation of double-strand break repair
via homologous recombination" evidence=ISO] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0016817 "hydrolase activity, acting on
acid anhydrides" evidence=IEA] [GO:0016818 "hydrolase activity,
acting on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0051536 "iron-sulfur cluster binding" evidence=IEA] [GO:0051539
"4 iron, 4 sulfur cluster binding" evidence=IEA] InterPro:IPR006555
InterPro:IPR010614 InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307
PROSITE:PS00690 PROSITE:PS51193 SMART:SM00491 MGI:MGI:2139369
INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0006281 GO:GO:0051539 GO:GO:0004003
InterPro:IPR014001 SMART:SM00487 GO:GO:0000723 GO:GO:0010569
eggNOG:COG1199 TIGRFAMs:TIGR00604 GeneTree:ENSGT00530000063199
KO:K11136 CTD:51750 EMBL:AY481619 EMBL:AY481620 EMBL:AY481621
EMBL:AY481622 EMBL:AY481623 EMBL:AK173097 EMBL:AK145145
EMBL:AL928965 EMBL:BC105578 EMBL:BC144977 EMBL:BC144978
EMBL:BC145658 IPI:IPI00274165 IPI:IPI00467288 IPI:IPI00754466
IPI:IPI00756345 IPI:IPI00756903 IPI:IPI00929860
RefSeq:NP_001001882.3 RefSeq:NP_001160137.1 RefSeq:NP_001160138.1
RefSeq:NP_001160139.1 RefSeq:NP_001160140.1 UniGene:Mm.11333
ProteinModelPortal:Q0VGM9 SMR:Q0VGM9 STRING:Q0VGM9
PhosphoSite:Q0VGM9 PRIDE:Q0VGM9 Ensembl:ENSMUST00000048608
Ensembl:ENSMUST00000054622 Ensembl:ENSMUST00000098971
Ensembl:ENSMUST00000108814 Ensembl:ENSMUST00000108815
Ensembl:ENSMUST00000148252 GeneID:269400 KEGG:mmu:269400
UCSC:uc008olu.2 UCSC:uc008olv.2 UCSC:uc008olw.2 UCSC:uc008olx.2
UCSC:uc012cmk.1 UCSC:uc012cml.1 InParanoid:Q6H1L3 OMA:VLKMQFL
ChiTaRS:RTEL1 NextBio:392832 Bgee:Q0VGM9 Genevestigator:Q0VGM9
Uniprot:Q0VGM9
Length = 1203
Score = 226 (84.6 bits), Expect = 1.2e-48, Sum P(5) = 1.2e-48
Identities = 64/213 (30%), Positives = 95/213 (44%)
Query: 582 LKYVMLTGEKVFSEIVEQA-HAVILAGGTLQPIEETRERL---FPWLSPNKFHFFSCSHI 637
L Y + + E+V Q +IL GTL P+ + FP N HI
Sbjct: 453 LSYWCFSPSQSMRELVCQGVRTLILTSGTLAPLSSFALEMQIPFPVCLENP-------HI 505
Query: 638 VPPESILPVALSCGPTGKXXXXXXXXXXXXAMIEELGLLLCNLVSVVPEGIIVFFPSFEY 697
+ + + GP G + LG L N+ VVP G++VFFPS+
Sbjct: 506 IDKNQLWVGIVPRGPDGVQLSSAYDKRFSEECLSSLGKALSNIARVVPHGLLVFFPSYPV 565
Query: 698 VERVYGAWKSLGILDRIMKKKHVFREPRGNTHVESVLKEYQKTIDTLSSRPKEDSTPLNG 757
+E+ W+ G+ ++ K +F EPR V+ Y + + + +S NG
Sbjct: 566 MEKSLEFWQVQGLARKVEALKPLFVEPRNKGSFSEVIDAYYQQVASPAS---------NG 616
Query: 758 AMLLAVVGGKISEGINFSDGMGRCIVMVGLPYP 790
A LAV GK SEG++FSD GR +++ GLPYP
Sbjct: 617 ATFLAVCRGKASEGLDFSDMNGRGVIVTGLPYP 649
Score = 164 (62.8 bits), Expect = 1.2e-48, Sum P(5) = 1.2e-48
Identities = 31/64 (48%), Positives = 43/64 (67%)
Query: 332 LDIEDLVHLGRHMRTCPYYGSRSMVPTADLVVLPYQSLLSKSARESLGLNLKNNIVIIDE 391
LDIEDLV G + CPYY SR+M AD++ +PY LL +R++ ++LK +VI DE
Sbjct: 192 LDIEDLVKNGSKQKMCPYYLSRNMKQQADIIFMPYNYLLDAKSRKAHSIDLKGTVVIFDE 251
Query: 392 AHNL 395
AHN+
Sbjct: 252 AHNV 255
Score = 136 (52.9 bits), Expect = 1.2e-48, Sum P(5) = 1.2e-48
Identities = 33/89 (37%), Positives = 51/89 (57%)
Query: 833 GILRSCRGRGKEYYENLCMKAVNQSIGRAIRHINDHAAILLVDLRYASESSKRSCSHPAN 892
G+ C G+E+Y+ +AVNQ+IGR IRH +D+ AI L D R+A ++
Sbjct: 671 GVGGQCLS-GQEWYQQQASRAVNQAIGRVIRHRHDYGAIFLCDHRFAYADARA------- 722
Query: 893 KLPRWIKDRLVSSTNNYGEVHRLLHQFFK 921
+LP W++ L +N+G V R + QFF+
Sbjct: 723 QLPSWVRPYL-KVYDNFGHVIRDVAQFFR 750
Score = 115 (45.5 bits), Expect = 1.2e-48, Sum P(5) = 1.2e-48
Identities = 26/54 (48%), Positives = 35/54 (64%)
Query: 221 KVYFCSRTHSQLSQFIKELRKTVFANEIKVVCLGSRKNFCINEEVLRLGNSTHI 274
K+ + SRTHSQL+Q I+ELR T + KV LGSR+ CI+ EV + S H+
Sbjct: 108 KIIYASRTHSQLTQVIRELRNTAYRP--KVCVLGSREQLCIHPEVKKQ-ESNHM 158
Score = 102 (41.0 bits), Expect = 1.2e-48, Sum P(5) = 1.2e-48
Identities = 22/43 (51%), Positives = 28/43 (65%)
Query: 20 YSIQTDFM-KALYCSLENGGVSMLESPTGTGKTLSIICSALQW 61
Y Q ++M K L C L+ +LESPTGTGKTL ++CS L W
Sbjct: 18 YPCQQEYMTKVLEC-LQKKVNGILESPTGTGKTLCLLCSTLAW 59
Score = 39 (18.8 bits), Expect = 9.6e-39, Sum P(5) = 9.6e-39
Identities = 7/27 (25%), Positives = 13/27 (48%)
Query: 833 GILRSCRGRGKEYYENLCMKAVNQSIG 859
G + R K+ +E++C + Q G
Sbjct: 951 GFYQFVRPHHKQQFEDICFQLTGQRCG 977
>DICTYBASE|DDB_G0286621 [details] [associations]
symbol:fncJ "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0016817 "hydrolase activity, acting on acid
anhydrides" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0006139 "nucleobase-containing compound
metabolic process" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=IEA;ISS] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006302
"double-strand break repair" evidence=ISS] [GO:0005634 "nucleus"
evidence=IEA;IC] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR002464
InterPro:IPR006555 InterPro:IPR010614 InterPro:IPR014013
Pfam:PF06733 Pfam:PF13307 PROSITE:PS00690 PROSITE:PS51193
SMART:SM00491 dictyBase:DDB_G0286621 INTERPRO:IPR013020
GO:GO:0005524 GO:GO:0005634 GenomeReviews:CM000153_GR GO:GO:0003677
EMBL:AAFI02000089 GO:GO:0004003 GO:GO:0006302 InterPro:IPR014001
SMART:SM00487 eggNOG:COG1199 TIGRFAMs:TIGR00604 KO:K15362
RefSeq:XP_637574.1 ProteinModelPortal:Q54LI7
EnsemblProtists:DDB0232367 GeneID:8625714 KEGG:ddi:DDB_G0286621
InParanoid:Q54LI7 Uniprot:Q54LI7
Length = 1078
Score = 262 (97.3 bits), Expect = 1.3e-48, Sum P(5) = 1.3e-48
Identities = 79/293 (26%), Positives = 132/293 (45%)
Query: 539 ILSGFQSLVDMLISLTNNDGDGRIIISKARPISSXXXXXXXXYLKY-----VMLTGEKV- 592
+L F+ + M+ D R+++ KA + K+ + ++
Sbjct: 734 LLESFEKVTAMIYQNKGWIEDYRLVLQKASAFQTNGGKKSNQGTKWNYQFGIWAMSPRIA 793
Query: 593 FSEIVEQAHAVILAGGTLQPIEETRERLFPWLSPNKFHFFSCSHIVPP--ESILPVALSC 650
FS +V+ +V+L GTL P+ FP KF + +P + LS
Sbjct: 794 FSSLVQATRSVVLTSGTLSPLYS-----FPMELAAKFPISAEMGNLPDIAQRAWIGTLSH 848
Query: 651 GPTGKXXXXXXXXXXXXAMIEELGLLLCNLVSVVPEGIIVFFPSFEYVERVYGAWKSLGI 710
G G + LG + + ++P G++ FFPS+ ++E++ W GI
Sbjct: 849 GVKGTKLICTHGPSEGLDFQDSLGETILQHIELIPSGVLCFFPSYGFLEKLLSRWDETGI 908
Query: 711 LDRIMKKKHVFREPRGNTHVESVLKEYQKTIDTLSSRPKEDSTPLNGAMLLAVVGGKISE 770
L +I KK F EP+ +E+ +T+D K+ P GA+L AV GK+SE
Sbjct: 909 LKKINAKKRYFYEPKNQ-------REFIETLDNYREEIKQ--RPNKGAILFAVCRGKVSE 959
Query: 771 GINFSDGMGRCIVMVGLPYPSPSNIELLERIKHIEGLGDTNSKTLNTSASDAY 823
GI+FSD R +++VG+PYPS ++ ++ + +H DTN K + S D Y
Sbjct: 960 GIDFSDEYARGVIVVGIPYPSLVDLRIVLKKEH----NDTNKKGI--SGGDWY 1006
Score = 167 (63.8 bits), Expect = 1.3e-48, Sum P(5) = 1.3e-48
Identities = 34/86 (39%), Positives = 50/86 (58%)
Query: 333 DIEDLVHLGRHMRTCPYYGSRSMVPTADLVVLPYQSLLSKSARESLGLNLKNNIVIIDEA 392
DIEDL+ G+ CPY+ SR M+ ADL+ PY L+ R+S + +IVI DEA
Sbjct: 516 DIEDLMEAGQAHSECPYFASRDMIEKADLIFCPYNYLIDPQIRKSFADKVAGSIVIFDEA 575
Query: 393 HNLADSLINMYNAKITLSQLENVHSH 418
HN+ D+L+ + +L +L N H +
Sbjct: 576 HNIEDALMETSSFDSSLEEL-NEHCY 600
Score = 105 (42.0 bits), Expect = 1.3e-48, Sum P(5) = 1.3e-48
Identities = 20/42 (47%), Positives = 28/42 (66%)
Query: 20 YSIQTDFMKALYCSLENGGVSMLESPTGTGKTLSIICSALQW 61
Y+ Q M + L++ +LESPTGTGKTLS++CS+L W
Sbjct: 205 YACQASMMSRILEGLDSKENCILESPTGTGKTLSLLCSSLAW 246
Score = 102 (41.0 bits), Expect = 1.3e-48, Sum P(5) = 1.3e-48
Identities = 20/41 (48%), Positives = 27/41 (65%)
Query: 222 VYFCSRTHSQLSQFIKELRKTVFANEIKVVCLGSRKNFCIN 262
++FCSRTHSQ+ Q EL+KT + + V L SR +CIN
Sbjct: 429 IFFCSRTHSQIKQLTGELKKTPYRPNM--VVLASRDQYCIN 467
Score = 100 (40.3 bits), Expect = 1.3e-48, Sum P(5) = 1.3e-48
Identities = 19/47 (40%), Positives = 31/47 (65%)
Query: 842 GKEYYENLCMKAVNQSIGRAIRHINDHAAILLVDLRYASESSKRSCS 888
G ++Y+ +A+NQ++GR IRH ND+ +ILL+D R+ + S S
Sbjct: 1002 GGDWYKLQAYRALNQALGRCIRHKNDYGSILLIDERFTQMGNWNSLS 1048
Score = 40 (19.1 bits), Expect = 3.1e-06, Sum P(3) = 3.1e-06
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 75 YETMIKSDHSFTNNGDCSSNDEPDWMRNF 103
Y +++ +F NG SN W F
Sbjct: 755 YRLVLQKASAFQTNGGKKSNQGTKWNYQF 783
>UNIPROTKB|E1BTS6 [details] [associations]
symbol:Gga.49055 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR006554 InterPro:IPR006555 InterPro:IPR010614
InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307 PROSITE:PS51193
SMART:SM00488 SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004003 TIGRFAMs:TIGR00604
GeneTree:ENSGT00530000063199 EMBL:AADN02019151 EMBL:AADN02019152
EMBL:AADN02019153 IPI:IPI00822587 Ensembl:ENSGALT00000039434
ArrayExpress:E1BTS6 Uniprot:E1BTS6
Length = 1124
Score = 230 (86.0 bits), Expect = 1.4e-48, Sum P(5) = 1.4e-48
Identities = 68/236 (28%), Positives = 105/236 (44%)
Query: 595 EIVEQA-HAVILAGGTLQPIEE-TRERLFPWLSPNKFHFFSCSHIVPPESILPVALSCGP 652
E+V Q +IL GTL P+ T E P+ P H++ + + GP
Sbjct: 468 ELVRQGVRTIILTSGTLSPLSSFTMEMQIPF--PV---LLENPHVIDKRQLWVGIIPKGP 522
Query: 653 TGKXXXXXXXXXXXXAMIEELGLLLCNLVSVVPEGIIVFFPSFEYVERVYGAWKSLGILD 712
G + LG + NLV VVP G++VFFPS+ +++ W+
Sbjct: 523 DGTVLNSAYERRFSEDYLSSLGKTIGNLVRVVPHGLLVFFPSYPVMDKSLEYWREHDFAK 582
Query: 713 RIMKKKHVFREPRGNTHVESVLKEYQKTIDTLSSRPKEDSTPLNGAMLLAVVGGKISEGI 772
RI + K +F EPR V+ Y I + PK NGA LAV GK SEG+
Sbjct: 583 RIEEVKPMFVEPRNKGSFAEVMDAYYSKI----ACPKS-----NGAAFLAVCRGKASEGL 633
Query: 773 NFSDGMGRCIVMVGLPYPSPSNIELLERIKHIEGLGDTNSKTLNTSASDAYYNGDA 828
+F+D GR +++ GLP+P ++ +++ + + +N S +YN A
Sbjct: 634 DFADMNGRGVIITGLPFPPRWEPRVVLKMQFLNEMKKSNMGAQCLSGHQ-WYNQQA 688
Score = 164 (62.8 bits), Expect = 1.4e-48, Sum P(5) = 1.4e-48
Identities = 31/64 (48%), Positives = 42/64 (65%)
Query: 332 LDIEDLVHLGRHMRTCPYYGSRSMVPTADLVVLPYQSLLSKSARESLGLNLKNNIVIIDE 391
+DIEDLV G R CPYY SRS+ AD++ +PY LL +R + + LK +VI+DE
Sbjct: 192 MDIEDLVKNGSKHRACPYYLSRSLKQQADIIFMPYNYLLDAKSRRAHNIELKGTVVILDE 251
Query: 392 AHNL 395
AHN+
Sbjct: 252 AHNV 255
Score = 125 (49.1 bits), Expect = 1.4e-48, Sum P(5) = 1.4e-48
Identities = 28/80 (35%), Positives = 45/80 (56%)
Query: 842 GKEYYENLCMKAVNQSIGRAIRHINDHAAILLVDLRYASESSKRSCSHPANKLPRWIKDR 901
G ++Y +AVNQ+IGR IRH D+ AI L D R+ +++ + KLP W++
Sbjct: 680 GHQWYNQQASRAVNQAIGRVIRHRQDYGAIFLCDDRFTTDNVR-------GKLPSWVRP- 731
Query: 902 LVSSTNNYGEVHRLLHQFFK 921
V+ +N+G R + FF+
Sbjct: 732 YVNVYDNFGHAVRSVSVFFR 751
Score = 121 (47.7 bits), Expect = 1.4e-48, Sum P(5) = 1.4e-48
Identities = 28/54 (51%), Positives = 36/54 (66%)
Query: 221 KVYFCSRTHSQLSQFIKELRKTVFANEIKVVCLGSRKNFCINEEVLRLGNSTHI 274
K+ + SRTHSQL+Q I EL+ TV+ +I V LGSR+ CIN EV R S H+
Sbjct: 108 KIIYASRTHSQLTQVINELKNTVYRPKICV--LGSREQLCINPEVKRQ-ESNHM 158
Score = 100 (40.3 bits), Expect = 1.4e-48, Sum P(5) = 1.4e-48
Identities = 22/43 (51%), Positives = 27/43 (62%)
Query: 20 YSIQTDFM-KALYCSLENGGVSMLESPTGTGKTLSIICSALQW 61
Y Q +M K L C L+ +LESPTGTGKTL ++CS L W
Sbjct: 18 YECQETYMAKVLEC-LQTKVNGILESPTGTGKTLCLLCSTLAW 59
>UNIPROTKB|F1NE49 [details] [associations]
symbol:Gga.49055 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0000723 "telomere maintenance"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR006554 InterPro:IPR006555 InterPro:IPR010614
InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307 PROSITE:PS51193
SMART:SM00488 SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004003 GO:GO:0000723
TIGRFAMs:TIGR00604 GeneTree:ENSGT00530000063199 OMA:VLKMQFL
EMBL:AADN02019151 EMBL:AADN02019152 EMBL:AADN02019153
IPI:IPI00597328 Ensembl:ENSGALT00000009881 ArrayExpress:F1NE49
Uniprot:F1NE49
Length = 1127
Score = 230 (86.0 bits), Expect = 1.5e-48, Sum P(5) = 1.5e-48
Identities = 68/236 (28%), Positives = 105/236 (44%)
Query: 595 EIVEQA-HAVILAGGTLQPIEE-TRERLFPWLSPNKFHFFSCSHIVPPESILPVALSCGP 652
E+V Q +IL GTL P+ T E P+ P H++ + + GP
Sbjct: 470 ELVRQGVRTIILTSGTLSPLSSFTMEMQIPF--PV---LLENPHVIDKRQLWVGIIPKGP 524
Query: 653 TGKXXXXXXXXXXXXAMIEELGLLLCNLVSVVPEGIIVFFPSFEYVERVYGAWKSLGILD 712
G + LG + NLV VVP G++VFFPS+ +++ W+
Sbjct: 525 DGTVLNSAYERRFSEDYLSSLGKTIGNLVRVVPHGLLVFFPSYPVMDKSLEYWREHDFAK 584
Query: 713 RIMKKKHVFREPRGNTHVESVLKEYQKTIDTLSSRPKEDSTPLNGAMLLAVVGGKISEGI 772
RI + K +F EPR V+ Y I + PK NGA LAV GK SEG+
Sbjct: 585 RIEEVKPMFVEPRNKGSFAEVMDAYYSKI----ACPKS-----NGAAFLAVCRGKASEGL 635
Query: 773 NFSDGMGRCIVMVGLPYPSPSNIELLERIKHIEGLGDTNSKTLNTSASDAYYNGDA 828
+F+D GR +++ GLP+P ++ +++ + + +N S +YN A
Sbjct: 636 DFADMNGRGVIITGLPFPPRWEPRVVLKMQFLNEMKKSNMGAQCLSGHQ-WYNQQA 690
Score = 164 (62.8 bits), Expect = 1.5e-48, Sum P(5) = 1.5e-48
Identities = 31/64 (48%), Positives = 42/64 (65%)
Query: 332 LDIEDLVHLGRHMRTCPYYGSRSMVPTADLVVLPYQSLLSKSARESLGLNLKNNIVIIDE 391
+DIEDLV G R CPYY SRS+ AD++ +PY LL +R + + LK +VI+DE
Sbjct: 194 MDIEDLVKNGSKHRACPYYLSRSLKQQADIIFMPYNYLLDAKSRRAHNIELKGTVVILDE 253
Query: 392 AHNL 395
AHN+
Sbjct: 254 AHNV 257
Score = 125 (49.1 bits), Expect = 1.5e-48, Sum P(5) = 1.5e-48
Identities = 28/80 (35%), Positives = 45/80 (56%)
Query: 842 GKEYYENLCMKAVNQSIGRAIRHINDHAAILLVDLRYASESSKRSCSHPANKLPRWIKDR 901
G ++Y +AVNQ+IGR IRH D+ AI L D R+ +++ + KLP W++
Sbjct: 682 GHQWYNQQASRAVNQAIGRVIRHRQDYGAIFLCDDRFTTDNVR-------GKLPSWVRP- 733
Query: 902 LVSSTNNYGEVHRLLHQFFK 921
V+ +N+G R + FF+
Sbjct: 734 YVNVYDNFGHAVRSVSVFFR 753
Score = 121 (47.7 bits), Expect = 1.5e-48, Sum P(5) = 1.5e-48
Identities = 28/54 (51%), Positives = 36/54 (66%)
Query: 221 KVYFCSRTHSQLSQFIKELRKTVFANEIKVVCLGSRKNFCINEEVLRLGNSTHI 274
K+ + SRTHSQL+Q I EL+ TV+ +I V LGSR+ CIN EV R S H+
Sbjct: 110 KIIYASRTHSQLTQVINELKNTVYRPKICV--LGSREQLCINPEVKRQ-ESNHM 160
Score = 100 (40.3 bits), Expect = 1.5e-48, Sum P(5) = 1.5e-48
Identities = 22/43 (51%), Positives = 27/43 (62%)
Query: 20 YSIQTDFM-KALYCSLENGGVSMLESPTGTGKTLSIICSALQW 61
Y Q +M K L C L+ +LESPTGTGKTL ++CS L W
Sbjct: 20 YECQETYMAKVLEC-LQTKVNGILESPTGTGKTLCLLCSTLAW 61
>UNIPROTKB|D4ACH4 [details] [associations]
symbol:Rtel1 "Regulator of telomere elongation helicase 1"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR006554 InterPro:IPR006555
InterPro:IPR006935 InterPro:IPR010614 InterPro:IPR014013
Pfam:PF04851 Pfam:PF06733 Pfam:PF13307 PROSITE:PS51193
SMART:SM00488 SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004003 TIGRFAMs:TIGR00604
IPI:IPI00781945 Ensembl:ENSRNOT00000029336 ArrayExpress:D4ACH4
Uniprot:D4ACH4
Length = 1165
Score = 232 (86.7 bits), Expect = 1.7e-48, Sum P(5) = 1.7e-48
Identities = 64/228 (28%), Positives = 103/228 (45%)
Query: 582 LKYVMLTGEKVFSEIVEQA-HAVILAGGTLQPIEETRERL---FPWLSPNKFHFFSCSHI 637
L Y + E+V+Q +IL GTL P+ + FP N HI
Sbjct: 453 LSYWCFSPSHSMRELVQQGVRTLILTSGTLAPLSSFALEMQIPFPVCLENP-------HI 505
Query: 638 VPPESILPVALSCGPTGKXXXXXXXXXXXXAMIEELGLLLCNLVSVVPEGIIVFFPSFEY 697
+ + + GP G + LG L N+ VVP G++VFFPS+
Sbjct: 506 IDKNQLWVGVIPRGPDGVQLSSAYDKRFSEECLSSLGKALGNIARVVPHGLLVFFPSYPV 565
Query: 698 VERVYGAWKSLGILDRIMKKKHVFREPRGNTHVESVLKEYQKTIDTLSSRPKEDSTPLNG 757
+E+ W++ G+ ++ K +F EPR V+ Y + + + S NG
Sbjct: 566 MEKSLEFWQAQGMSKKVEALKPLFVEPRNKGSFSEVIDAYYQQVASPGS---------NG 616
Query: 758 AMLLAVVGGKISEGINFSDGMGRCIVMVGLPYPSPSNIELLERIKHIE 805
A LAV GK SEG++FSD GR +++ GLPYP + ++ +++ ++
Sbjct: 617 ATFLAVCRGKASEGLDFSDMNGRGVIVTGLPYPPRMDPRVILKMQFLD 664
Score = 163 (62.4 bits), Expect = 1.7e-48, Sum P(5) = 1.7e-48
Identities = 32/77 (41%), Positives = 48/77 (62%)
Query: 319 QKGFRNEISQQGALDIEDLVHLGRHMRTCPYYGSRSMVPTADLVVLPYQSLLSKSARESL 378
+K E++ LDIEDLV G + CPYY SR++ AD++ +PY LL +R++
Sbjct: 180 EKSLEQELATP-ILDIEDLVKNGSKHKVCPYYLSRNLKQQADIIFMPYNYLLDAKSRKAH 238
Query: 379 GLNLKNNIVIIDEAHNL 395
++LK +VI DEAHN+
Sbjct: 239 NIDLKGTVVIFDEAHNV 255
Score = 137 (53.3 bits), Expect = 1.7e-48, Sum P(5) = 1.7e-48
Identities = 32/80 (40%), Positives = 49/80 (61%)
Query: 842 GKEYYENLCMKAVNQSIGRAIRHINDHAAILLVDLRYASESSKRSCSHPANKLPRWIKDR 901
G+E+Y+ +AVNQ+IGR IRH +D+ AI L D R+A ++ +H LP W++
Sbjct: 679 GQEWYQQQASRAVNQAIGRVIRHRHDYGAIFLCDHRFAYADAR---AH----LPSWVRPY 731
Query: 902 LVSSTNNYGEVHRLLHQFFK 921
L +N+G V R + QFF+
Sbjct: 732 L-KVYDNFGRVIRDVAQFFR 750
Score = 109 (43.4 bits), Expect = 1.7e-48, Sum P(5) = 1.7e-48
Identities = 26/54 (48%), Positives = 34/54 (62%)
Query: 221 KVYFCSRTHSQLSQFIKELRKTVFANEIKVVCLGSRKNFCINEEVLRLGNSTHI 274
K+ + SRTHSQL+Q I ELR T + KV LGSR+ CI+ EV + S H+
Sbjct: 108 KIIYASRTHSQLTQVIGELRNTSYRP--KVCVLGSREQLCIHPEVKKQ-ESNHM 158
Score = 99 (39.9 bits), Expect = 1.7e-48, Sum P(5) = 1.7e-48
Identities = 21/43 (48%), Positives = 28/43 (65%)
Query: 20 YSIQTDFM-KALYCSLENGGVSMLESPTGTGKTLSIICSALQW 61
Y Q ++M K L C L+ +LESPTGTGKTL ++C+ L W
Sbjct: 18 YPCQQEYMTKVLEC-LQKKVNGILESPTGTGKTLCLLCTTLAW 59
>RGD|1306721 [details] [associations]
symbol:Rtel1 "regulator of telomere elongation helicase 1"
species:10116 "Rattus norvegicus" [GO:0000723 "telomere
maintenance" evidence=ISO;ISS] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=IEA;ISO;ISS] [GO:0005524 "ATP binding"
evidence=IEA;ISO;ISS] [GO:0005634 "nucleus" evidence=IEA;ISO;ISS]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0010569 "regulation of
double-strand break repair via homologous recombination"
evidence=ISO;ISS] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA]
InterPro:IPR006554 InterPro:IPR006555 InterPro:IPR006935
InterPro:IPR010614 InterPro:IPR014013 Pfam:PF04851 Pfam:PF06733
Pfam:PF13307 PROSITE:PS00690 PROSITE:PS51193 SMART:SM00488
SMART:SM00491 RGD:1306721 INTERPRO:IPR013020 GO:GO:0005524
GO:GO:0005634 GO:GO:0046872 GO:GO:0003677 GO:GO:0006281
GO:GO:0051539 GO:GO:0004003 GO:GO:0000723 GO:GO:0010569
eggNOG:COG1199 TIGRFAMs:TIGR00604 EMBL:CH474066
HOGENOM:HOG000007558 KO:K11136 CTD:51750 OrthoDB:EOG412M4Q
EMBL:BC086436 IPI:IPI00781945 IPI:IPI00782143 RefSeq:NP_001178786.1
UniGene:Rn.98315 PRIDE:Q5RJZ1 GeneID:362288 KEGG:rno:362288
UCSC:RGD:1306721 NextBio:679364 ArrayExpress:Q5RJZ1
Genevestigator:Q5RJZ1 Uniprot:Q5RJZ1
Length = 1274
Score = 232 (86.7 bits), Expect = 3.1e-48, Sum P(5) = 3.1e-48
Identities = 64/228 (28%), Positives = 103/228 (45%)
Query: 582 LKYVMLTGEKVFSEIVEQA-HAVILAGGTLQPIEETRERL---FPWLSPNKFHFFSCSHI 637
L Y + E+V+Q +IL GTL P+ + FP N HI
Sbjct: 453 LSYWCFSPSHSMRELVQQGVRTLILTSGTLAPLSSFALEMQIPFPVCLENP-------HI 505
Query: 638 VPPESILPVALSCGPTGKXXXXXXXXXXXXAMIEELGLLLCNLVSVVPEGIIVFFPSFEY 697
+ + + GP G + LG L N+ VVP G++VFFPS+
Sbjct: 506 IDKNQLWVGVIPRGPDGVQLSSAYDKRFSEECLSSLGKALGNIARVVPHGLLVFFPSYPV 565
Query: 698 VERVYGAWKSLGILDRIMKKKHVFREPRGNTHVESVLKEYQKTIDTLSSRPKEDSTPLNG 757
+E+ W++ G+ ++ K +F EPR V+ Y + + + S NG
Sbjct: 566 MEKSLEFWQAQGMSKKVEALKPLFVEPRNKGSFSEVIDAYYQQVASPGS---------NG 616
Query: 758 AMLLAVVGGKISEGINFSDGMGRCIVMVGLPYPSPSNIELLERIKHIE 805
A LAV GK SEG++FSD GR +++ GLPYP + ++ +++ ++
Sbjct: 617 ATFLAVCRGKASEGLDFSDMNGRGVIVTGLPYPPRMDPRVILKMQFLD 664
Score = 163 (62.4 bits), Expect = 3.1e-48, Sum P(5) = 3.1e-48
Identities = 32/77 (41%), Positives = 48/77 (62%)
Query: 319 QKGFRNEISQQGALDIEDLVHLGRHMRTCPYYGSRSMVPTADLVVLPYQSLLSKSARESL 378
+K E++ LDIEDLV G + CPYY SR++ AD++ +PY LL +R++
Sbjct: 180 EKSLEQELATP-ILDIEDLVKNGSKHKVCPYYLSRNLKQQADIIFMPYNYLLDAKSRKAH 238
Query: 379 GLNLKNNIVIIDEAHNL 395
++LK +VI DEAHN+
Sbjct: 239 NIDLKGTVVIFDEAHNV 255
Score = 137 (53.3 bits), Expect = 3.1e-48, Sum P(5) = 3.1e-48
Identities = 32/80 (40%), Positives = 49/80 (61%)
Query: 842 GKEYYENLCMKAVNQSIGRAIRHINDHAAILLVDLRYASESSKRSCSHPANKLPRWIKDR 901
G+E+Y+ +AVNQ+IGR IRH +D+ AI L D R+A ++ +H LP W++
Sbjct: 679 GQEWYQQQASRAVNQAIGRVIRHRHDYGAIFLCDHRFAYADAR---AH----LPSWVRPY 731
Query: 902 LVSSTNNYGEVHRLLHQFFK 921
L +N+G V R + QFF+
Sbjct: 732 L-KVYDNFGRVIRDVAQFFR 750
Score = 109 (43.4 bits), Expect = 3.1e-48, Sum P(5) = 3.1e-48
Identities = 26/54 (48%), Positives = 34/54 (62%)
Query: 221 KVYFCSRTHSQLSQFIKELRKTVFANEIKVVCLGSRKNFCINEEVLRLGNSTHI 274
K+ + SRTHSQL+Q I ELR T + KV LGSR+ CI+ EV + S H+
Sbjct: 108 KIIYASRTHSQLTQVIGELRNTSYRP--KVCVLGSREQLCIHPEVKKQ-ESNHM 158
Score = 99 (39.9 bits), Expect = 3.1e-48, Sum P(5) = 3.1e-48
Identities = 21/43 (48%), Positives = 28/43 (65%)
Query: 20 YSIQTDFM-KALYCSLENGGVSMLESPTGTGKTLSIICSALQW 61
Y Q ++M K L C L+ +LESPTGTGKTL ++C+ L W
Sbjct: 18 YPCQQEYMTKVLEC-LQKKVNGILESPTGTGKTLCLLCTTLAW 59
>UNIPROTKB|J9NVZ8 [details] [associations]
symbol:BRIP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR006555 InterPro:IPR010614 InterPro:IPR014013
Pfam:PF06733 Pfam:PF13307 PROSITE:PS51193 SMART:SM00491
INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0004003 InterPro:IPR014001 SMART:SM00487 TIGRFAMs:TIGR00604
GeneTree:ENSGT00530000063199 EMBL:AAEX03006594 EMBL:AAEX03006595
EMBL:AAEX03006596 Ensembl:ENSCAFT00000045493 Uniprot:J9NVZ8
Length = 1214
Score = 224 (83.9 bits), Expect = 3.4e-48, Sum P(5) = 3.4e-48
Identities = 57/222 (25%), Positives = 107/222 (48%)
Query: 582 LKYVMLTGEKVFSEIVEQAHAVILAGGTLQPIEETRERLFPWLSPNKFHFFSCSHIVPPE 641
L + L FS+I + ++L GTL P++ L + +H++
Sbjct: 588 LNFWCLNPAVAFSDINGKVLTIVLTSGTLSPMKSFSSELGVTFTIQ----LEANHVINNS 643
Query: 642 SILPVALSCGPTGKXXXXXXXXXXXXAMIEELGLLLCNLVSVVPEGIIVFFPSFEYVERV 701
+ + GP G+ +E+G LL ++ V +GI+ F PS++ +E++
Sbjct: 644 QVWVGTIGSGPKGRNLCATFQHTETFEFQDEVGALLLSVCQTVNQGILCFLPSYKLLEKL 703
Query: 702 YGAWKSLGILDRIMKKKHVFREPRGN--THVESVLKEYQKTIDTLSSRPKEDSTPLNGAM 759
W G+ + K V EP+G T +L+ Y D + + ++D GA+
Sbjct: 704 KERWLYTGLWHNLELVKTVIVEPQGGEKTDFNELLQVYY---DAIKYKGEKD-----GAL 755
Query: 760 LLAVVGGKISEGINFSDGMGRCIVMVGLPYPSPSNIEL-LER 800
L+AV GK+SEG++FSD R ++ +G+P+P+ ++++ L+R
Sbjct: 756 LVAVCRGKVSEGLDFSDDNARAVITIGIPFPNVKDLQVELKR 797
Score = 189 (71.6 bits), Expect = 3.4e-48, Sum P(5) = 3.4e-48
Identities = 36/90 (40%), Positives = 53/90 (58%)
Query: 331 ALDIEDLVHLGRHMRTCPYYGSRSMVPTADLVVLPYQSLLSKSARESLGLNLKNNIVIID 390
A DIE+LV LG+ ++ CPYY +R ++ A ++ PY LL RES+ +NLK +VI+D
Sbjct: 333 AWDIEELVSLGKKLKACPYYTARELIEDAHIIFCPYNYLLDAQIRESMDINLKEQVVILD 392
Query: 391 EAHNLADSLINMYNAKITLSQLENVHSHLE 420
EAHN+ D + +T QL L+
Sbjct: 393 EAHNIEDCARESASYSVTEVQLRFARDELD 422
Score = 125 (49.1 bits), Expect = 3.4e-48, Sum P(5) = 3.4e-48
Identities = 25/61 (40%), Positives = 41/61 (67%)
Query: 221 KVYFCSRTHSQLSQFIKELRKTVFANEIKVVCLGSRKNFCINEEVLRLGNSTHINERCLE 280
K+YF +RTH Q++Q +ELR+T ++ + + L SR + C++ EV+ GN NE+C+E
Sbjct: 244 KIYFGTRTHKQIAQITRELRRTAYSG-VPMTILSSRDHTCVHPEVV--GNFNR-NEKCME 299
Query: 281 L 281
L
Sbjct: 300 L 300
Score = 112 (44.5 bits), Expect = 3.4e-48, Sum P(5) = 3.4e-48
Identities = 23/61 (37%), Positives = 39/61 (63%)
Query: 842 GKEYYENLCMKAVNQSIGRAIRHINDHAAILLVDLRYASESSKRSCSHPANKLPRWIKDR 901
G+++YE +A+NQ++GR IRH ND A++LVD R+ S S+ + L +WI+ +
Sbjct: 812 GRQWYEIQAYRALNQALGRCIRHKNDWGALILVDDRFRSNPSRY-----ISGLSKWIRQQ 866
Query: 902 L 902
+
Sbjct: 867 I 867
Score = 89 (36.4 bits), Expect = 3.4e-48, Sum P(5) = 3.4e-48
Identities = 17/42 (40%), Positives = 26/42 (61%)
Query: 20 YSIQTDFMKALYCSLENGGVSMLESPTGTGKTLSIICSALQW 61
Y Q M ++ L + +LESPTG+GK+L+++CS L W
Sbjct: 22 YPSQLAMMNSIVRGLNSKQHCLLESPTGSGKSLALLCSTLAW 63
Score = 42 (19.8 bits), Expect = 3.1e-22, Sum P(4) = 3.1e-22
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 438 IQTLMVFTRAFLQVLLKEKDENDVRQDSEN 467
+++L F+R +V+ K++ QDSE+
Sbjct: 877 LESLSDFSRKHQKVINVSKEDRKFTQDSES 906
>UNIPROTKB|E2RHN5 [details] [associations]
symbol:BRIP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0031965 "nuclear membrane" evidence=IEA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004003 "ATP-dependent
DNA helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR006555 InterPro:IPR010614
InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307 PROSITE:PS51193
SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0003677 GO:GO:0006357 GO:GO:0004003
InterPro:IPR014001 SMART:SM00487 TIGRFAMs:TIGR00604
GeneTree:ENSGT00530000063199 OMA:GVHKISD EMBL:AAEX03006594
EMBL:AAEX03006595 EMBL:AAEX03006596 Ensembl:ENSCAFT00000028135
Uniprot:E2RHN5
Length = 1244
Score = 224 (83.9 bits), Expect = 4.0e-48, Sum P(5) = 4.0e-48
Identities = 57/222 (25%), Positives = 107/222 (48%)
Query: 582 LKYVMLTGEKVFSEIVEQAHAVILAGGTLQPIEETRERLFPWLSPNKFHFFSCSHIVPPE 641
L + L FS+I + ++L GTL P++ L + +H++
Sbjct: 589 LNFWCLNPAVAFSDINGKVLTIVLTSGTLSPMKSFSSELGVTFTIQ----LEANHVINNS 644
Query: 642 SILPVALSCGPTGKXXXXXXXXXXXXAMIEELGLLLCNLVSVVPEGIIVFFPSFEYVERV 701
+ + GP G+ +E+G LL ++ V +GI+ F PS++ +E++
Sbjct: 645 QVWVGTIGSGPKGRNLCATFQHTETFEFQDEVGALLLSVCQTVNQGILCFLPSYKLLEKL 704
Query: 702 YGAWKSLGILDRIMKKKHVFREPRGN--THVESVLKEYQKTIDTLSSRPKEDSTPLNGAM 759
W G+ + K V EP+G T +L+ Y D + + ++D GA+
Sbjct: 705 KERWLYTGLWHNLELVKTVIVEPQGGEKTDFNELLQVYY---DAIKYKGEKD-----GAL 756
Query: 760 LLAVVGGKISEGINFSDGMGRCIVMVGLPYPSPSNIEL-LER 800
L+AV GK+SEG++FSD R ++ +G+P+P+ ++++ L+R
Sbjct: 757 LVAVCRGKVSEGLDFSDDNARAVITIGIPFPNVKDLQVELKR 798
Score = 189 (71.6 bits), Expect = 4.0e-48, Sum P(5) = 4.0e-48
Identities = 36/90 (40%), Positives = 53/90 (58%)
Query: 331 ALDIEDLVHLGRHMRTCPYYGSRSMVPTADLVVLPYQSLLSKSARESLGLNLKNNIVIID 390
A DIE+LV LG+ ++ CPYY +R ++ A ++ PY LL RES+ +NLK +VI+D
Sbjct: 334 AWDIEELVSLGKKLKACPYYTARELIEDAHIIFCPYNYLLDAQIRESMDINLKEQVVILD 393
Query: 391 EAHNLADSLINMYNAKITLSQLENVHSHLE 420
EAHN+ D + +T QL L+
Sbjct: 394 EAHNIEDCARESASYSVTEVQLRFARDELD 423
Score = 125 (49.1 bits), Expect = 4.0e-48, Sum P(5) = 4.0e-48
Identities = 25/61 (40%), Positives = 41/61 (67%)
Query: 221 KVYFCSRTHSQLSQFIKELRKTVFANEIKVVCLGSRKNFCINEEVLRLGNSTHINERCLE 280
K+YF +RTH Q++Q +ELR+T ++ + + L SR + C++ EV+ GN NE+C+E
Sbjct: 245 KIYFGTRTHKQIAQITRELRRTAYSG-VPMTILSSRDHTCVHPEVV--GNFNR-NEKCME 300
Query: 281 L 281
L
Sbjct: 301 L 301
Score = 112 (44.5 bits), Expect = 4.0e-48, Sum P(5) = 4.0e-48
Identities = 23/61 (37%), Positives = 39/61 (63%)
Query: 842 GKEYYENLCMKAVNQSIGRAIRHINDHAAILLVDLRYASESSKRSCSHPANKLPRWIKDR 901
G+++YE +A+NQ++GR IRH ND A++LVD R+ S S+ + L +WI+ +
Sbjct: 813 GRQWYEIQAYRALNQALGRCIRHKNDWGALILVDDRFRSNPSRY-----ISGLSKWIRQQ 867
Query: 902 L 902
+
Sbjct: 868 I 868
Score = 89 (36.4 bits), Expect = 4.0e-48, Sum P(5) = 4.0e-48
Identities = 17/42 (40%), Positives = 26/42 (61%)
Query: 20 YSIQTDFMKALYCSLENGGVSMLESPTGTGKTLSIICSALQW 61
Y Q M ++ L + +LESPTG+GK+L+++CS L W
Sbjct: 22 YPSQLAMMNSIVRGLNSKQHCLLESPTGSGKSLALLCSTLAW 63
Score = 42 (19.8 bits), Expect = 3.5e-22, Sum P(4) = 3.5e-22
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 438 IQTLMVFTRAFLQVLLKEKDENDVRQDSEN 467
+++L F+R +V+ K++ QDSE+
Sbjct: 878 LESLSDFSRKHQKVINVSKEDRKFTQDSES 907
>UNIPROTKB|B4I0K4 [details] [associations]
symbol:GM12432 "Regulator of telomere elongation helicase 1
homolog" species:7238 "Drosophila sechellia" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0005524
"ATP binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0010569 "regulation of double-strand break repair via
homologous recombination" evidence=ISS] InterPro:IPR006554
InterPro:IPR006555 InterPro:IPR010614 InterPro:IPR014013
Pfam:PF06733 Pfam:PF13307 PROSITE:PS00690 PROSITE:PS51193
SMART:SM00488 SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524
GO:GO:0005634 GO:GO:0046872 GO:GO:0003677 GO:GO:0006281
GO:GO:0051539 GO:GO:0004003 EMBL:CH480819 GO:GO:0010569
TIGRFAMs:TIGR00604 KO:K11136 OrthoDB:EOG4S4MX7
RefSeq:XP_002036876.1 EnsemblMetazoa:FBtr0195417 GeneID:6612367
KEGG:dse:Dsec_GM12432 FlyBase:FBgn0167369 Uniprot:B4I0K4
Length = 966
Score = 255 (94.8 bits), Expect = 4.7e-48, Sum P(5) = 4.7e-48
Identities = 65/230 (28%), Positives = 112/230 (48%)
Query: 599 QAHAVILAGGTLQPIEETRERLFPWLSPNKFHFFSCSHIVPPESILPVALSCGPTGKXXX 658
Q +VIL GTL P++ L P H + HIV + + GP +
Sbjct: 453 QVRSVILTSGTLAPLKPLIAEL---AIPVAQHLEN-PHIVDQSQVYVKIIGTGPDRQQLI 508
Query: 659 XXXXXXXXXAMIEELGLLLCNLVSVVPEGIIVFFPSFEYVERVYGAWKSLGILDRIMKKK 718
+ LG + N+ +VP+G++VFFPS+ + + AW++ G+ I KK
Sbjct: 509 SNYANRDNPKYVSSLGQTILNVARIVPDGLLVFFPSYPMLNKCVDAWQASGLWADISCKK 568
Query: 719 HVFREPRGNTHVESVLKEYQKTIDTLSSRPKEDSTPLNGAMLLAVVGGKISEGINFSDGM 778
+F EPR S ++E+ + I DS GA+ +AV GK+SEG++F+D
Sbjct: 569 PIFLEPRSKDQFTSTMEEFYQAI--------RDS---KGAVFMAVCRGKVSEGLDFADRN 617
Query: 779 GRCIVMVGLPYPSPSNIELLERIKHIEGLGDTNSKTLNTSASDAYYNGDA 828
GR +++ GLP+P + +++ + +++E ++ L+ +YN DA
Sbjct: 618 GRAVIITGLPFPPLKDPKVILKRRYLEANRTRENQLLS---GQEWYNLDA 664
Score = 142 (55.0 bits), Expect = 4.7e-48, Sum P(5) = 4.7e-48
Identities = 31/58 (53%), Positives = 42/58 (72%)
Query: 219 VLKVYFCSRTHSQLSQFIKELRKTVFANEIKVVCLGSRKNFCINEEVLR-LGNSTHIN 275
V KV + SRTHSQL+Q ++EL++T +AN ++ V LGSR CI+ EV+R LGNS N
Sbjct: 106 VPKVIYASRTHSQLTQAMRELKRTAYAN-MRSVVLGSRDQLCIHPEVMRELGNSNKTN 162
Score = 132 (51.5 bits), Expect = 4.7e-48, Sum P(5) = 4.7e-48
Identities = 33/82 (40%), Positives = 45/82 (54%)
Query: 842 GKEYYENLCMKAVNQSIGRAIRHINDHAAILLVDLRYASESSKRSCSHPANKLPRWIKDR 901
G+E+Y +AVNQ+IGR IRH ND+ AILL D R+ S +L +WI+
Sbjct: 656 GQEWYNLDATRAVNQAIGRVIRHRNDYGAILLCDSRFKDASQ-------VQQLSKWIRGH 708
Query: 902 LVS--STNNYGEVHRLLHQFFK 921
L + +G + R L QFFK
Sbjct: 709 LGDRPQCSPFGPIVRELRQFFK 730
Score = 121 (47.7 bits), Expect = 4.7e-48, Sum P(5) = 4.7e-48
Identities = 23/44 (52%), Positives = 33/44 (75%)
Query: 20 YSIQTDFM-KALYCSLENGGVSMLESPTGTGKTLSIICSALQWV 62
Y +Q +M K ++C L +G +LESPTGTGKTLS++CS+L W+
Sbjct: 18 YPVQRAYMEKVIHC-LRDGTNGVLESPTGTGKTLSLLCSSLAWI 60
Score = 78 (32.5 bits), Expect = 4.7e-48, Sum P(5) = 4.7e-48
Identities = 12/24 (50%), Positives = 19/24 (79%)
Query: 332 LDIEDLVHLGRHMRTCPYYGSRSM 355
+DIEDLV +G+ ++ CPY+ SR +
Sbjct: 194 MDIEDLVKVGQRLKICPYFASREL 217
Score = 62 (26.9 bits), Expect = 2.1e-46, Sum P(5) = 2.1e-46
Identities = 20/68 (29%), Positives = 36/68 (52%)
Query: 361 LVVLPYQSLLSKSARESLGLNLKNNIVIIDEAHNLADSLINMY-NAKITLSQ----LENV 415
L + PY S+ + + L N IVI+DEAHN+ + + Y + +I S +E++
Sbjct: 206 LKICPY--FASRELARANKIELGNTIVILDEAHNI-EKICEEYASVQIKSSDVAMTIEDI 262
Query: 416 HSHLEKYF 423
+H+ + F
Sbjct: 263 -THIRQVF 269
Score = 40 (19.1 bits), Expect = 4.1e-25, Sum P(5) = 4.1e-25
Identities = 10/38 (26%), Positives = 19/38 (50%)
Query: 728 THVESVLKEYQKTIDTLSSRPKEDSTPLNGAMLLAVVG 765
T ++ +L E +K ID + D T +M+ ++G
Sbjct: 291 TLLKEMLLELEKAIDAVVVDNAVDGTTFPASMMYELLG 328
>UNIPROTKB|E2RLA6 [details] [associations]
symbol:RTEL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR006554 InterPro:IPR006555 InterPro:IPR010614
InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307 PROSITE:PS51193
SMART:SM00488 SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004003 TIGRFAMs:TIGR00604
GeneTree:ENSGT00530000063199 OMA:VLKMQFL EMBL:AAEX03014162
EMBL:AAEX03014163 Ensembl:ENSCAFT00000020689 Uniprot:E2RLA6
Length = 1232
Score = 229 (85.7 bits), Expect = 8.7e-48, Sum P(5) = 8.7e-48
Identities = 75/248 (30%), Positives = 108/248 (43%)
Query: 571 SSXXXXXXXXYLKYVMLTGEKVFSEIVEQA-HAVILAGGTLQPIEETRERL---FPWLSP 626
SS L Y + ++V+Q VIL GTL P+ + FP
Sbjct: 441 SSTAARKPGKVLSYWCFSPGHSMRQLVQQGVRTVILTSGTLAPVSSFALEMQIPFPVCLE 500
Query: 627 NKFHFFSCSHIVPPESILPVALSCGPTGKXXXXXXXXXXXXAMIEELGLLLCNLVSVVPE 686
N H++ + I +S GP G A + LG L N+ VVP
Sbjct: 501 NP-------HVIHQQQIWVGIVSRGPDGAQLSSAFDKRFSEACLSSLGKALGNIARVVPH 553
Query: 687 GIIVFFPSFEYVERVYGAWKSLGILDRIMKKKHVFREPRGNTHVESVLKEYQKTIDTLSS 746
G++VFFPS+ +ER W++ ++ K VF EPR V+ Y + +
Sbjct: 554 GLLVFFPSYPVLERSLQFWRTHDSAGKLEALKPVFVEPRNKGGFSEVVDAYYARV----A 609
Query: 747 RPKEDSTPLNGAMLLAVVGGKISEGINFSDGMGRCIVMVGLPYP---SPS---NIELLER 800
P ST GA LAV GK SEG++F+D GR +++ GLPYP P ++ L+
Sbjct: 610 CP--GST---GATFLAVCRGKASEGLDFADMNGRGVIITGLPYPPRMDPRVVLKMQFLDE 664
Query: 801 IKHIEGLG 808
IK+ G G
Sbjct: 665 IKNHRGPG 672
Score = 163 (62.4 bits), Expect = 8.7e-48, Sum P(5) = 8.7e-48
Identities = 32/77 (41%), Positives = 47/77 (61%)
Query: 319 QKGFRNEISQQGALDIEDLVHLGRHMRTCPYYGSRSMVPTADLVVLPYQSLLSKSARESL 378
+K E++ LDIEDLV G + CPYY SR++ AD++ +PY LL +R +
Sbjct: 179 EKSLEQELATP-ILDIEDLVKSGNKHKLCPYYLSRNLKQQADIIFMPYNYLLDTKSRRAH 237
Query: 379 GLNLKNNIVIIDEAHNL 395
++LK +VI DEAHN+
Sbjct: 238 SIDLKGTVVIFDEAHNV 254
Score = 130 (50.8 bits), Expect = 8.7e-48, Sum P(5) = 8.7e-48
Identities = 31/84 (36%), Positives = 48/84 (57%)
Query: 842 GKEYYENLCMKAVNQSIGRAIRHINDHAAILLVDLRYASESSKRSCSHPANKLPRWIKDR 901
G E+Y +AVNQ+IGR IRH +D+ AI L D R+A ++ +LP W++
Sbjct: 678 GHEWYRQQASRAVNQAIGRVIRHRHDYGAIFLCDHRFAHVDARA-------QLPSWVRPH 730
Query: 902 LVSSTNNYGEVHRLLHQFFKFNKN 925
V +++G V R + QFF+ +N
Sbjct: 731 -VRVYDSFGPVIRDVAQFFRVAQN 753
Score = 110 (43.8 bits), Expect = 8.7e-48, Sum P(5) = 8.7e-48
Identities = 25/54 (46%), Positives = 35/54 (64%)
Query: 221 KVYFCSRTHSQLSQFIKELRKTVFANEIKVVCLGSRKNFCINEEVLRLGNSTHI 274
K+ + SRTHSQL+Q I+ELR T + + V LGSR+ CI+ EV + S H+
Sbjct: 107 KIIYASRTHSQLTQVIRELRNTSYRPRVCV--LGSREQLCIHPEVKKQ-ESNHM 157
Score = 103 (41.3 bits), Expect = 8.7e-48, Sum P(5) = 8.7e-48
Identities = 22/43 (51%), Positives = 28/43 (65%)
Query: 20 YSIQTDFM-KALYCSLENGGVSMLESPTGTGKTLSIICSALQW 61
Y Q ++M K L C L+ +LESPTGTGKTL ++CS L W
Sbjct: 18 YKCQEEYMSKVLEC-LQKRVNGILESPTGTGKTLCLLCSTLAW 59
Score = 38 (18.4 bits), Expect = 2.1e-38, Sum P(5) = 2.1e-38
Identities = 8/32 (25%), Positives = 14/32 (43%)
Query: 833 GILRSCRGRGKEYYENLCMKAVNQSIGRAIRH 864
G + R K+ +E C++ +S G H
Sbjct: 957 GFYQFVRPHHKQRFEEACVQRTGRSCGYQPEH 988
>UNIPROTKB|Q6H1L8 [details] [associations]
symbol:Rtel1 "Regulator of telomere elongation helicase 1"
species:10096 "Mus spretus" [GO:0000723 "telomere maintenance"
evidence=ISS] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0010569 "regulation of double-strand
break repair via homologous recombination" evidence=ISS]
InterPro:IPR006554 InterPro:IPR006555 InterPro:IPR010614
InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307 PROSITE:PS00690
PROSITE:PS51193 SMART:SM00488 SMART:SM00491 MGI:MGI:2139369
INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0006281 GO:GO:0051539 GO:GO:0004003
GO:GO:0000723 GO:GO:0010569 TIGRFAMs:TIGR00604 EMBL:AY481613
EMBL:AY481614 EMBL:AY481615 EMBL:AY481616 EMBL:AY481617
EMBL:AY530632 ProteinModelPortal:Q6H1L8 Uniprot:Q6H1L8
Length = 1203
Score = 229 (85.7 bits), Expect = 3.1e-47, Sum P(5) = 3.1e-47
Identities = 64/211 (30%), Positives = 96/211 (45%)
Query: 582 LKYVMLTGEKVFSEIVEQA-HAVILAGGTLQPIEE-TRERLFPWLSPNKFHFFSCSHIVP 639
L Y + + E+V Q +IL GTL P+ E+ P+ P HI+
Sbjct: 453 LSYWCFSPSQSMRELVCQGVRTLILTSGTLAPLSSFALEKQIPF--PV---CLENPHIID 507
Query: 640 PESILPVALSCGPTGKXXXXXXXXXXXXAMIEELGLLLCNLVSVVPEGIIVFFPSFEYVE 699
+ + GP G + LG L N+ VVP G++VFFPS+ +E
Sbjct: 508 KNQLWVGIVPRGPDGVQLSSAYDKRFSEECLSSLGKALSNIARVVPHGLLVFFPSYPVME 567
Query: 700 RVYGAWKSLGILDRIMKKKHVFREPRGNTHVESVLKEYQKTIDTLSSRPKEDSTPLNGAM 759
+ W+ G+ ++ K +F EPR V+ Y + + + +S NGA
Sbjct: 568 KSLEFWQVQGLARKVEALKPLFVEPRNKGSFSEVIDAYYQQVASPAS---------NGAT 618
Query: 760 LLAVVGGKISEGINFSDGMGRCIVMVGLPYP 790
LAV GK SEG++FSD GR +++ GLPYP
Sbjct: 619 FLAVCRGKASEGLDFSDMNGRGVIVTGLPYP 649
Score = 164 (62.8 bits), Expect = 3.1e-47, Sum P(5) = 3.1e-47
Identities = 31/64 (48%), Positives = 43/64 (67%)
Query: 332 LDIEDLVHLGRHMRTCPYYGSRSMVPTADLVVLPYQSLLSKSARESLGLNLKNNIVIIDE 391
LDIEDLV G + CPYY SR+M AD++ +PY LL +R++ ++LK +VI DE
Sbjct: 192 LDIEDLVKNGSKQKMCPYYLSRNMKQQADIIFMPYNYLLDAKSRKAHSIDLKGTVVIFDE 251
Query: 392 AHNL 395
AHN+
Sbjct: 252 AHNV 255
Score = 126 (49.4 bits), Expect = 3.1e-47, Sum P(5) = 3.1e-47
Identities = 31/89 (34%), Positives = 49/89 (55%)
Query: 833 GILRSCRGRGKEYYENLCMKAVNQSIGRAIRHINDHAAILLVDLRYASESSKRSCSHPAN 892
G+ C G+E+Y+ +AVNQ+IGR IRH +D+ AI L D R+A ++
Sbjct: 671 GVGGQCLS-GQEWYQQQASRAVNQAIGRVIRHRHDYGAIFLCDHRFAYADARA------- 722
Query: 893 KLPRWIKDRLVSSTNNYGEVHRLLHQFFK 921
+LP W++ L +N+G R + QF +
Sbjct: 723 QLPSWVRPYL-KVYDNFGHAIRDVAQFLR 750
Score = 108 (43.1 bits), Expect = 3.1e-47, Sum P(5) = 3.1e-47
Identities = 25/54 (46%), Positives = 34/54 (62%)
Query: 221 KVYFCSRTHSQLSQFIKELRKTVFANEIKVVCLGSRKNFCINEEVLRLGNSTHI 274
K+ + SRTHSQ +Q I+ELR T + KV LGSR+ CI+ EV + S H+
Sbjct: 108 KIIYASRTHSQPTQVIRELRNTAYRP--KVCVLGSREQLCIHPEVKKQ-ESNHM 158
Score = 102 (41.0 bits), Expect = 3.1e-47, Sum P(5) = 3.1e-47
Identities = 22/43 (51%), Positives = 28/43 (65%)
Query: 20 YSIQTDFM-KALYCSLENGGVSMLESPTGTGKTLSIICSALQW 61
Y Q ++M K L C L+ +LESPTGTGKTL ++CS L W
Sbjct: 18 YPCQQEYMTKVLEC-LQKKVNGILESPTGTGKTLCLLCSTLAW 59
Score = 39 (18.8 bits), Expect = 2.3e-38, Sum P(5) = 2.3e-38
Identities = 7/27 (25%), Positives = 13/27 (48%)
Query: 833 GILRSCRGRGKEYYENLCMKAVNQSIG 859
G + R K+ +E++C + Q G
Sbjct: 951 GFYQFVRPHHKQQFEDICFQLTGQRCG 977
>UNIPROTKB|Q9NZ71 [details] [associations]
symbol:RTEL1 "Regulator of telomere elongation helicase 1"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0051539 "4 iron, 4 sulfur cluster
binding" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IMP] [GO:0000723 "telomere maintenance"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005524 "ATP
binding" evidence=IMP] [GO:0010569 "regulation of double-strand
break repair via homologous recombination" evidence=IMP]
InterPro:IPR006554 InterPro:IPR006555 InterPro:IPR010614
InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307 PROSITE:PS00690
PROSITE:PS51193 SMART:SM00488 SMART:SM00491 INTERPRO:IPR013020
GO:GO:0005524 GO:GO:0005634 EMBL:CH471077 GO:GO:0046872
GO:GO:0003677 GO:GO:0006281 GO:GO:0051539 GO:GO:0004003
EMBL:AF217796 GO:GO:0000723 GO:GO:0010569 eggNOG:COG1199
TIGRFAMs:TIGR00604 EMBL:AL353715 KO:K11136 CTD:51750
OrthoDB:EOG412M4Q EMBL:AF217795 EMBL:AB029011 EMBL:AK000485
EMBL:AK302508 EMBL:AK299332 EMBL:AK304798 EMBL:AL080127
IPI:IPI00219849 IPI:IPI00413900 IPI:IPI00718800 IPI:IPI00745153
IPI:IPI00929254 IPI:IPI00929311 IPI:IPI00929712 IPI:IPI00929751
PIR:T12516 PIR:T45294 RefSeq:NP_057518.1 RefSeq:NP_116575.3
UniGene:Hs.434878 ProteinModelPortal:Q9NZ71 SMR:Q9NZ71
IntAct:Q9NZ71 STRING:Q9NZ71 PhosphoSite:Q9NZ71 DMDM:229462743
PaxDb:Q9NZ71 PRIDE:Q9NZ71 GeneID:51750 KEGG:hsa:51750
UCSC:uc002yfu.2 UCSC:uc002yfx.1 UCSC:uc011abd.2 UCSC:uc021wge.1
GeneCards:GC20P062289 HGNC:HGNC:15888 MIM:608833 neXtProt:NX_Q9NZ71
PharmGKB:PA134915625 HOVERGEN:HBG108423 InParanoid:Q9NZ71
GenomeRNAi:51750 NextBio:55835 ArrayExpress:Q9NZ71 Bgee:Q9NZ71
Genevestigator:Q9NZ71 GermOnline:ENSG00000026036 Uniprot:Q9NZ71
Length = 1219
Score = 217 (81.4 bits), Expect = 5.4e-47, Sum P(5) = 5.4e-47
Identities = 65/229 (28%), Positives = 102/229 (44%)
Query: 595 EIVEQA-HAVILAGGTLQPIEETRERL---FPWLSPNKFHFFSCSHIVPPESILPVALSC 650
E+V Q ++IL GTL P+ + FP N HI+ I +
Sbjct: 466 ELVRQGVRSLILTSGTLAPVSSFALEMQIPFPVCLENP-------HIIDKHQIWVGVVPR 518
Query: 651 GPTGKXXXXXXXXXXXXAMIEELGLLLCNLVSVVPEGIIVFFPSFEYVERVYGAWKSLGI 710
GP G + LG L N+ VVP G+++FFPS+ +E+ W++ +
Sbjct: 519 GPDGAQLSSAFDRRFSEECLSSLGKALGNIARVVPYGLLIFFPSYPVMEKSLEFWRARDL 578
Query: 711 LDRIMKKKHVFREPRGNTHVESVLKEYQKTIDTLSSRPKEDSTPLNGAMLLAVVGGKISE 770
++ K +F EPR + Y + + P ST GA LAV GK SE
Sbjct: 579 ARKMEALKPLFVEPRSKGSFSETISAYYARV----AAP--GST---GATFLAVCRGKASE 629
Query: 771 GINFSDGMGRCIVMVGLPYP---SPSNIELLERIKHIEGLGDTNSKTLN 816
G++FSD GR +++ GLPYP P + ++ + ++G G + L+
Sbjct: 630 GLDFSDTNGRGVIVTGLPYPPRMDPRVVLKMQFLDEMKGQGGAGGQFLS 678
Score = 167 (63.8 bits), Expect = 5.4e-47, Sum P(5) = 5.4e-47
Identities = 33/77 (42%), Positives = 47/77 (61%)
Query: 319 QKGFRNEISQQGALDIEDLVHLGRHMRTCPYYGSRSMVPTADLVVLPYQSLLSKSARESL 378
+K E++ LDIEDLV G R CPYY SR++ AD++ +PY LL +R +
Sbjct: 180 EKSLEQELASP-ILDIEDLVKSGSKHRVCPYYLSRNLKQQADIIFMPYNYLLDAKSRRAH 238
Query: 379 GLNLKNNIVIIDEAHNL 395
++LK +VI DEAHN+
Sbjct: 239 NIDLKGTVVIFDEAHNV 255
Score = 132 (51.5 bits), Expect = 5.4e-47, Sum P(5) = 5.4e-47
Identities = 30/80 (37%), Positives = 46/80 (57%)
Query: 842 GKEYYENLCMKAVNQSIGRAIRHINDHAAILLVDLRYASESSKRSCSHPANKLPRWIKDR 901
G+E+Y +AVNQ+IGR IRH D+ A+ L D R+A ++ +LP W++
Sbjct: 679 GQEWYRQQASRAVNQAIGRVIRHRQDYGAVFLCDHRFAFADARA-------QLPSWVRPH 731
Query: 902 LVSSTNNYGEVHRLLHQFFK 921
V +N+G V R + QFF+
Sbjct: 732 -VRVYDNFGHVIRDVAQFFR 750
Score = 112 (44.5 bits), Expect = 5.4e-47, Sum P(5) = 5.4e-47
Identities = 26/54 (48%), Positives = 34/54 (62%)
Query: 221 KVYFCSRTHSQLSQFIKELRKTVFANEIKVVCLGSRKNFCINEEVLRLGNSTHI 274
K+ + SRTHSQL+Q I ELR T + KV LGSR+ CI+ EV + S H+
Sbjct: 108 KIIYASRTHSQLTQVINELRNTSYRP--KVCVLGSREQLCIHPEVKKQ-ESNHL 158
Score = 100 (40.3 bits), Expect = 5.4e-47, Sum P(5) = 5.4e-47
Identities = 21/43 (48%), Positives = 28/43 (65%)
Query: 20 YSIQTDFM-KALYCSLENGGVSMLESPTGTGKTLSIICSALQW 61
Y Q ++M K L C L+ +LESPTGTGKTL ++C+ L W
Sbjct: 18 YKCQQEYMTKVLEC-LQQKVNGILESPTGTGKTLCLLCTTLAW 59
Score = 37 (18.1 bits), Expect = 2.6e-37, Sum P(5) = 2.6e-37
Identities = 7/32 (21%), Positives = 14/32 (43%)
Query: 833 GILRSCRGRGKEYYENLCMKAVNQSIGRAIRH 864
G + R K+ +E +C++ + G H
Sbjct: 951 GFYQFVRPHHKQQFEEVCIQLTGRGCGYRPEH 982
>UNIPROTKB|A4K436 [details] [associations]
symbol:RTEL1 "Regulator of telomere elongation helicase 1"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=ISS]
[GO:0010569 "regulation of double-strand break repair via
homologous recombination" evidence=ISS] [GO:0005524 "ATP binding"
evidence=ISS] [GO:0000723 "telomere maintenance" evidence=ISS]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISS]
[GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR006554 InterPro:IPR006555 InterPro:IPR010614
InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307 PROSITE:PS00690
PROSITE:PS51193 SMART:SM00488 SMART:SM00491 INTERPRO:IPR013020
GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0006281 GO:GO:0051539 GO:GO:0004003 GO:GO:0000723
GO:GO:0010569 eggNOG:COG1199 TIGRFAMs:TIGR00604
HOGENOM:HOG000007558 KO:K11136 EMBL:DQ323152 EMBL:DQ323153
EMBL:DQ420360 EMBL:DQ420361 EMBL:DQ420362 EMBL:DQ420363
IPI:IPI00840795 IPI:IPI00905335 IPI:IPI00930023 IPI:IPI00930030
IPI:IPI00930035 RefSeq:NP_001091044.1 UniGene:Bt.6256
ProteinModelPortal:A4K436 GeneID:505721 KEGG:bta:505721 CTD:51750
InParanoid:A4K434 OrthoDB:EOG412M4Q NextBio:20867282 Uniprot:A4K436
Length = 1216
Score = 217 (81.4 bits), Expect = 1.1e-46, Sum P(5) = 1.1e-46
Identities = 59/213 (27%), Positives = 102/213 (47%)
Query: 595 EIVEQA-HAVILAGGTLQPIEE-TRERLFPWLSPNKFHFFSCSHIVPPESILPVALSCGP 652
E+V Q +IL GTL P+ + E P+ P H++ I + GP
Sbjct: 464 ELVRQGVRTLILTSGTLAPMASFSLEMQIPF--PV---CLENPHVINQHQIWVGVIPKGP 518
Query: 653 TGKXXXXXXXXXXXXAMIEELGLLLCNLVSVVPEGIIVFFPSFEYVERVYGAWKSLGILD 712
G + LG +L N+ VVP G++VFFPS+ +E+ W++
Sbjct: 519 DGAQLSSAFDRRFSDECLSSLGKVLSNISRVVPHGLLVFFPSYPVMEKSLEFWRARDFTR 578
Query: 713 RIMKKKHVFREPRGNTHVESVLKEYQKTIDTLSSRPKEDSTPLNGAMLLAVVGGKISEGI 772
++ +K +F EPR V++ + + + P+ +GA+ LAV GK SEG+
Sbjct: 579 KLEVRKPLFVEPRSKGGFSEVMEAFYARV----AAPES-----SGAIFLAVCRGKASEGL 629
Query: 773 NFSDGMGRCIVMVGLPYPSPSNIELLERIKHIE 805
+F+D GR +++ GLPYP + +L +++ ++
Sbjct: 630 DFADVNGRGVIVTGLPYPPRMDPRVLLKMQFLD 662
Score = 172 (65.6 bits), Expect = 1.1e-46, Sum P(5) = 1.1e-46
Identities = 37/94 (39%), Positives = 54/94 (57%)
Query: 302 RRTKAFSGCPVLRSHKLQKGFRNEISQQGALDIEDLVHLGRHMRTCPYYGSRSMVPTADL 361
RR A C + + +K E++ LDIEDLV G + CPYY SR++ AD+
Sbjct: 163 RRKVASRSCHFYNNVE-EKSLEQELATP-ILDIEDLVRSGTKHKLCPYYLSRNLKQQADI 220
Query: 362 VVLPYQSLLSKSARESLGLNLKNNIVIIDEAHNL 395
+ +PY LL +R + G++LK +VI DEAHN+
Sbjct: 221 IFMPYNYLLDAKSRRAHGIDLKGTVVIFDEAHNV 254
Score = 125 (49.1 bits), Expect = 1.1e-46, Sum P(5) = 1.1e-46
Identities = 28/80 (35%), Positives = 46/80 (57%)
Query: 842 GKEYYENLCMKAVNQSIGRAIRHINDHAAILLVDLRYASESSKRSCSHPANKLPRWIKDR 901
G ++Y +AVNQ+IGR IRH +D+ A+ L D R+A ++ +LP W++
Sbjct: 677 GHDWYRQQASRAVNQAIGRVIRHRHDYGAVFLCDHRFAHADTRA-------QLPSWVRPH 729
Query: 902 LVSSTNNYGEVHRLLHQFFK 921
V +++G V R + QFF+
Sbjct: 730 -VKVYDSFGHVIRDVAQFFR 748
Score = 108 (43.1 bits), Expect = 1.1e-46, Sum P(5) = 1.1e-46
Identities = 25/54 (46%), Positives = 34/54 (62%)
Query: 221 KVYFCSRTHSQLSQFIKELRKTVFANEIKVVCLGSRKNFCINEEVLRLGNSTHI 274
K+ + SRTHSQL+Q I ELR T + + V LGSR+ CI+ EV + S H+
Sbjct: 107 KIIYASRTHSQLTQVISELRNTSYRPRVCV--LGSREQLCIHPEVKKQ-ESNHM 157
Score = 103 (41.3 bits), Expect = 1.1e-46, Sum P(5) = 1.1e-46
Identities = 22/43 (51%), Positives = 27/43 (62%)
Query: 20 YSIQTDFM-KALYCSLENGGVSMLESPTGTGKTLSIICSALQW 61
Y Q ++M K L C E +LESPTGTGKTL ++CS L W
Sbjct: 18 YKCQEEYMSKVLECLQEKVN-GILESPTGTGKTLCLLCSTLAW 59
Score = 40 (19.1 bits), Expect = 5.0e-38, Sum P(5) = 5.0e-38
Identities = 16/58 (27%), Positives = 25/58 (43%)
Query: 833 GILRSCRGRGKEYYENLCMKAVNQSIGRAIRHINDHAAILLVDLRYASESSKRSCSHP 890
G + R K+ +E +C++ Q G + H + H L A +SS R S P
Sbjct: 954 GFYQFVRPHHKQQFEEVCLQLTGQ--GCSSPHKHGHPQRQGAQL--ALDSSGRKESDP 1007
Score = 39 (18.8 bits), Expect = 1.4e-06, Sum P(3) = 1.4e-06
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 836 RSCRGRGKEYYENLCMKAVNQSIGRAIRHIND 867
R R +Y N+ K++ Q + I I D
Sbjct: 164 RKVASRSCHFYNNVEEKSLEQELATPILDIED 195
Score = 38 (18.4 bits), Expect = 1.5e-19, Sum P(5) = 1.5e-19
Identities = 7/24 (29%), Positives = 14/24 (58%)
Query: 615 ETRERLFPWLSPNKFHFFSCSHIV 638
+TR +L W+ P+ + S H++
Sbjct: 717 DTRAQLPSWVRPHVKVYDSFGHVI 740
>UNIPROTKB|F6WH68 [details] [associations]
symbol:RTEL1 "Protein RTEL1-TNFRSF6B" species:9606 "Homo
sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR006554 InterPro:IPR006555 InterPro:IPR010614
InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307 PROSITE:PS51193
SMART:SM00488 SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004003 EMBL:AL121845
TIGRFAMs:TIGR00604 EMBL:AL353715 HGNC:HGNC:15888 OMA:VLKMQFL
HGNC:HGNC:44095 IPI:IPI01021192 SMR:F6WH68 Ensembl:ENST00000318100
Ensembl:ENST00000482936 Uniprot:F6WH68
Length = 1400
Score = 217 (81.4 bits), Expect = 1.3e-46, Sum P(5) = 1.3e-46
Identities = 65/229 (28%), Positives = 102/229 (44%)
Query: 595 EIVEQA-HAVILAGGTLQPIEETRERL---FPWLSPNKFHFFSCSHIVPPESILPVALSC 650
E+V Q ++IL GTL P+ + FP N HI+ I +
Sbjct: 466 ELVRQGVRSLILTSGTLAPVSSFALEMQIPFPVCLENP-------HIIDKHQIWVGVVPR 518
Query: 651 GPTGKXXXXXXXXXXXXAMIEELGLLLCNLVSVVPEGIIVFFPSFEYVERVYGAWKSLGI 710
GP G + LG L N+ VVP G+++FFPS+ +E+ W++ +
Sbjct: 519 GPDGAQLSSAFDRRFSEECLSSLGKALGNIARVVPYGLLIFFPSYPVMEKSLEFWRARDL 578
Query: 711 LDRIMKKKHVFREPRGNTHVESVLKEYQKTIDTLSSRPKEDSTPLNGAMLLAVVGGKISE 770
++ K +F EPR + Y + + P ST GA LAV GK SE
Sbjct: 579 ARKMEALKPLFVEPRSKGSFSETISAYYARV----AAP--GST---GATFLAVCRGKASE 629
Query: 771 GINFSDGMGRCIVMVGLPYP---SPSNIELLERIKHIEGLGDTNSKTLN 816
G++FSD GR +++ GLPYP P + ++ + ++G G + L+
Sbjct: 630 GLDFSDTNGRGVIVTGLPYPPRMDPRVVLKMQFLDEMKGQGGAGGQFLS 678
Score = 167 (63.8 bits), Expect = 1.3e-46, Sum P(5) = 1.3e-46
Identities = 33/77 (42%), Positives = 47/77 (61%)
Query: 319 QKGFRNEISQQGALDIEDLVHLGRHMRTCPYYGSRSMVPTADLVVLPYQSLLSKSARESL 378
+K E++ LDIEDLV G R CPYY SR++ AD++ +PY LL +R +
Sbjct: 180 EKSLEQELASP-ILDIEDLVKSGSKHRVCPYYLSRNLKQQADIIFMPYNYLLDAKSRRAH 238
Query: 379 GLNLKNNIVIIDEAHNL 395
++LK +VI DEAHN+
Sbjct: 239 NIDLKGTVVIFDEAHNV 255
Score = 132 (51.5 bits), Expect = 1.3e-46, Sum P(5) = 1.3e-46
Identities = 30/80 (37%), Positives = 46/80 (57%)
Query: 842 GKEYYENLCMKAVNQSIGRAIRHINDHAAILLVDLRYASESSKRSCSHPANKLPRWIKDR 901
G+E+Y +AVNQ+IGR IRH D+ A+ L D R+A ++ +LP W++
Sbjct: 679 GQEWYRQQASRAVNQAIGRVIRHRQDYGAVFLCDHRFAFADARA-------QLPSWVRPH 731
Query: 902 LVSSTNNYGEVHRLLHQFFK 921
V +N+G V R + QFF+
Sbjct: 732 -VRVYDNFGHVIRDVAQFFR 750
Score = 112 (44.5 bits), Expect = 1.3e-46, Sum P(5) = 1.3e-46
Identities = 26/54 (48%), Positives = 34/54 (62%)
Query: 221 KVYFCSRTHSQLSQFIKELRKTVFANEIKVVCLGSRKNFCINEEVLRLGNSTHI 274
K+ + SRTHSQL+Q I ELR T + KV LGSR+ CI+ EV + S H+
Sbjct: 108 KIIYASRTHSQLTQVINELRNTSYRP--KVCVLGSREQLCIHPEVKKQ-ESNHL 158
Score = 100 (40.3 bits), Expect = 1.3e-46, Sum P(5) = 1.3e-46
Identities = 21/43 (48%), Positives = 28/43 (65%)
Query: 20 YSIQTDFM-KALYCSLENGGVSMLESPTGTGKTLSIICSALQW 61
Y Q ++M K L C L+ +LESPTGTGKTL ++C+ L W
Sbjct: 18 YKCQQEYMTKVLEC-LQQKVNGILESPTGTGKTLCLLCTTLAW 59
Score = 37 (18.1 bits), Expect = 6.3e-37, Sum P(5) = 6.3e-37
Identities = 7/32 (21%), Positives = 14/32 (43%)
Query: 833 GILRSCRGRGKEYYENLCMKAVNQSIGRAIRH 864
G + R K+ +E +C++ + G H
Sbjct: 951 GFYQFVRPHHKQQFEEVCIQLTGRGCGYRPEH 982
>UNIPROTKB|E1BNG9 [details] [associations]
symbol:BRIP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR006554 InterPro:IPR006555 InterPro:IPR010614
InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307 PROSITE:PS51193
SMART:SM00488 SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004003 TIGRFAMs:TIGR00604
GeneTree:ENSGT00530000063199 EMBL:DAAA02048371 IPI:IPI00923893
Ensembl:ENSBTAT00000048969 Uniprot:E1BNG9
Length = 1098
Score = 239 (89.2 bits), Expect = 6.4e-46, Sum P(4) = 6.4e-46
Identities = 63/253 (24%), Positives = 121/253 (47%)
Query: 551 ISLTNNDGDGRIIISKARPISSXXXXXXXXYLKYVMLTGEKVFSEIVEQAHAVILAGGTL 610
I+ ++ G +I+SK + L + L FS+I + A++L GTL
Sbjct: 495 INQSDTTDHGLLILSKNK--KRLRQKAAVRVLNFWCLNPAVAFSDINGKVWAIVLTSGTL 552
Query: 611 QPIEETRERLFPWLSPNKFHFFSCSHIVPPESILPVALSCGPTGKXXXXXXXXXXXXAMI 670
P++ L + +H++ + + GP G+
Sbjct: 553 SPMKSFSSELGVTFTIQ----LEANHVINNSQVWVGTIGSGPKGRSLCATFQHTETFEFQ 608
Query: 671 EELGLLLCNLVSVVPEGIIVFFPSFEYVERVYGAWKSLGILDRIMKKKHVFREPRGNTHV 730
+E+G LL ++ + +GI+ F PS++ +E++ W S G+ + K V EP+G +
Sbjct: 609 DEVGALLLSVCQTISQGILCFLPSYKLLEKLKERWLSTGLWYNLELVKTVIVEPQGGEKI 668
Query: 731 E--SVLKEYQKTIDTLSSRPKEDSTPLNGAMLLAVVGGKISEGINFSDGMGRCIVMVGLP 788
+ +L+ Y D + + ++D GA+L+AV GK+SEG++FSD R +V +G+P
Sbjct: 669 DFDELLQMYY---DAIKYKGEKD-----GALLVAVCRGKVSEGLDFSDDNARAVVTIGIP 720
Query: 789 YPSPSNIEL-LER 800
+P+ ++++ L+R
Sbjct: 721 FPNVKDLQVELKR 733
Score = 195 (73.7 bits), Expect = 6.4e-46, Sum P(4) = 6.4e-46
Identities = 37/90 (41%), Positives = 54/90 (60%)
Query: 331 ALDIEDLVHLGRHMRTCPYYGSRSMVPTADLVVLPYQSLLSKSARESLGLNLKNNIVIID 390
A DIE+LV LGR ++ CPYY +R ++ AD++ PY LL RE++ +NLK +VI+D
Sbjct: 270 AWDIEELVSLGRKLKACPYYTARELMQNADIIFCPYNYLLDAQIRETMDINLKEQVVILD 329
Query: 391 EAHNLADSLINMYNAKITLSQLENVHSHLE 420
EAHN+ D + +T QL L+
Sbjct: 330 EAHNIEDCARESASYSVTEVQLRFARDELD 359
Score = 122 (48.0 bits), Expect = 6.4e-46, Sum P(4) = 6.4e-46
Identities = 24/61 (39%), Positives = 41/61 (67%)
Query: 221 KVYFCSRTHSQLSQFIKELRKTVFANEIKVVCLGSRKNFCINEEVLRLGNSTHINERCLE 280
K+YF +RTH Q++Q +EL++T ++ + + L SR + C++ EV+ GN NE+C+E
Sbjct: 181 KIYFGTRTHKQIAQITRELQRTAYSG-VPMTILSSRDHTCVHPEVM--GNFNR-NEKCME 236
Query: 281 L 281
L
Sbjct: 237 L 237
Score = 114 (45.2 bits), Expect = 6.4e-46, Sum P(4) = 6.4e-46
Identities = 26/80 (32%), Positives = 46/80 (57%)
Query: 842 GKEYYENLCMKAVNQSIGRAIRHINDHAAILLVDLRYASESSKRSCSHPANKLPRWIKDR 901
G+++YE +A+NQ++GR IRH ND A++LVD R+ S S+ + L +W++ +
Sbjct: 748 GRQWYEIQAYRALNQALGRCIRHKNDWGALILVDDRFRSNPSRY-----ISGLSKWVR-Q 801
Query: 902 LVSSTNNYGEVHRLLHQFFK 921
L+ + + L +F K
Sbjct: 802 LIQHHSTFESALESLAEFAK 821
Score = 40 (19.1 bits), Expect = 5.8e-18, Sum P(3) = 5.8e-18
Identities = 10/41 (24%), Positives = 21/41 (51%)
Query: 438 IQTLMVFTRAFLQVLLKEKDENDVRQDSENSTGAKHAFDSS 478
+++L F + +V+ K++ Q SE + G + DS+
Sbjct: 813 LESLAEFAKKHQKVIAASKEDRKSIQGSEPTLGGACSKDST 853
>UNIPROTKB|F1MMS0 [details] [associations]
symbol:BRIP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0031965 "nuclear membrane" evidence=IEA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR006554 InterPro:IPR006555 InterPro:IPR010614
InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307 PROSITE:PS51193
SMART:SM00488 SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0003677 GO:GO:0006357
GO:GO:0004003 TIGRFAMs:TIGR00604 GeneTree:ENSGT00530000063199
OMA:GVHKISD EMBL:DAAA02048371 IPI:IPI00923893
Ensembl:ENSBTAT00000061499 Uniprot:F1MMS0
Length = 1164
Score = 239 (89.2 bits), Expect = 8.8e-46, Sum P(4) = 8.8e-46
Identities = 63/253 (24%), Positives = 121/253 (47%)
Query: 551 ISLTNNDGDGRIIISKARPISSXXXXXXXXYLKYVMLTGEKVFSEIVEQAHAVILAGGTL 610
I+ ++ G +I+SK + L + L FS+I + A++L GTL
Sbjct: 495 INQSDTTDHGLLILSKNK--KRLRQKAAVRVLNFWCLNPAVAFSDINGKVWAIVLTSGTL 552
Query: 611 QPIEETRERLFPWLSPNKFHFFSCSHIVPPESILPVALSCGPTGKXXXXXXXXXXXXAMI 670
P++ L + +H++ + + GP G+
Sbjct: 553 SPMKSFSSELGVTFTIQ----LEANHVINNSQVWVGTIGSGPKGRSLCATFQHTETFEFQ 608
Query: 671 EELGLLLCNLVSVVPEGIIVFFPSFEYVERVYGAWKSLGILDRIMKKKHVFREPRGNTHV 730
+E+G LL ++ + +GI+ F PS++ +E++ W S G+ + K V EP+G +
Sbjct: 609 DEVGALLLSVCQTISQGILCFLPSYKLLEKLKERWLSTGLWYNLELVKTVIVEPQGGEKI 668
Query: 731 E--SVLKEYQKTIDTLSSRPKEDSTPLNGAMLLAVVGGKISEGINFSDGMGRCIVMVGLP 788
+ +L+ Y D + + ++D GA+L+AV GK+SEG++FSD R +V +G+P
Sbjct: 669 DFDELLQMYY---DAIKYKGEKD-----GALLVAVCRGKVSEGLDFSDDNARAVVTIGIP 720
Query: 789 YPSPSNIEL-LER 800
+P+ ++++ L+R
Sbjct: 721 FPNVKDLQVELKR 733
Score = 195 (73.7 bits), Expect = 8.8e-46, Sum P(4) = 8.8e-46
Identities = 37/90 (41%), Positives = 54/90 (60%)
Query: 331 ALDIEDLVHLGRHMRTCPYYGSRSMVPTADLVVLPYQSLLSKSARESLGLNLKNNIVIID 390
A DIE+LV LGR ++ CPYY +R ++ AD++ PY LL RE++ +NLK +VI+D
Sbjct: 270 AWDIEELVSLGRKLKACPYYTARELMQNADIIFCPYNYLLDAQIRETMDINLKEQVVILD 329
Query: 391 EAHNLADSLINMYNAKITLSQLENVHSHLE 420
EAHN+ D + +T QL L+
Sbjct: 330 EAHNIEDCARESASYSVTEVQLRFARDELD 359
Score = 122 (48.0 bits), Expect = 8.8e-46, Sum P(4) = 8.8e-46
Identities = 24/61 (39%), Positives = 41/61 (67%)
Query: 221 KVYFCSRTHSQLSQFIKELRKTVFANEIKVVCLGSRKNFCINEEVLRLGNSTHINERCLE 280
K+YF +RTH Q++Q +EL++T ++ + + L SR + C++ EV+ GN NE+C+E
Sbjct: 181 KIYFGTRTHKQIAQITRELQRTAYSG-VPMTILSSRDHTCVHPEVM--GNFNR-NEKCME 236
Query: 281 L 281
L
Sbjct: 237 L 237
Score = 114 (45.2 bits), Expect = 8.8e-46, Sum P(4) = 8.8e-46
Identities = 26/80 (32%), Positives = 46/80 (57%)
Query: 842 GKEYYENLCMKAVNQSIGRAIRHINDHAAILLVDLRYASESSKRSCSHPANKLPRWIKDR 901
G+++YE +A+NQ++GR IRH ND A++LVD R+ S S+ + L +W++ +
Sbjct: 748 GRQWYEIQAYRALNQALGRCIRHKNDWGALILVDDRFRSNPSRY-----ISGLSKWVR-Q 801
Query: 902 LVSSTNNYGEVHRLLHQFFK 921
L+ + + L +F K
Sbjct: 802 LIQHHSTFESALESLAEFAK 821
Score = 40 (19.1 bits), Expect = 7.2e-18, Sum P(3) = 7.2e-18
Identities = 10/41 (24%), Positives = 21/41 (51%)
Query: 438 IQTLMVFTRAFLQVLLKEKDENDVRQDSENSTGAKHAFDSS 478
+++L F + +V+ K++ Q SE + G + DS+
Sbjct: 813 LESLAEFAKKHQKVIAASKEDRKSIQGSEPTLGGACSKDST 853
>UNIPROTKB|Q5RE34 [details] [associations]
symbol:RTEL1 "Regulator of telomere elongation helicase 1"
species:9601 "Pongo abelii" [GO:0000723 "telomere maintenance"
evidence=ISS] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0010569 "regulation of double-strand
break repair via homologous recombination" evidence=ISS]
InterPro:IPR006554 InterPro:IPR006555 InterPro:IPR010614
InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307 PROSITE:PS00690
PROSITE:PS51193 SMART:SM00488 SMART:SM00491 INTERPRO:IPR013020
GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0006281 GO:GO:0051539 GO:GO:0004003 GO:GO:0000723
GO:GO:0010569 TIGRFAMs:TIGR00604 KO:K11136 CTD:51750 EMBL:CR857704
RefSeq:NP_001124929.1 UniGene:Pab.2365 ProteinModelPortal:Q5RE34
GeneID:100171800 KEGG:pon:100171800 Uniprot:Q5RE34
Length = 1302
Score = 322 (118.4 bits), Expect = 4.9e-45, Sum P(4) = 4.9e-45
Identities = 130/521 (24%), Positives = 216/521 (41%)
Query: 319 QKGFRNEISQQGALDIEDLVHLGRHMRTCPYYGSRSMVPTADLVVLPYQSLLSKSARESL 378
+K E++ LDIEDLV G R CPYY SR++ AD++ +PY LL +R +
Sbjct: 181 EKSLEQELASP-ILDIEDLVKSGSKHRVCPYYLSRNLKQQADIIFMPYNYLLDAKSRRAH 239
Query: 379 GLNLKNNIVIIDEAHNLADSLINMYNAKIT----LSQLENVHSHLEKYF-----GR---- 425
++LK +VI DEAHN+ + +T S L+ + LE+ G
Sbjct: 240 NIDLKGTVVIFDEAHNVEKMCEESASFDLTPHDLASGLDIIDQVLEEQTKTAQQGEPHPE 299
Query: 426 FCS-LLGPGNRRYIQTLMVFTRAFLQVLLKEKDENDVRQDSENSTGAKHAFDSSVAINEF 484
F + PG ++ + L+ L D ++ D T A +
Sbjct: 300 FSADSTSPGLNMELEDIAKLKMILLR-LEGAIDAVELPGDDSGVTKPGSYIFELFAEAQI 358
Query: 485 LFSLNIDNIN-LVKLLKYIK-ESNIIHKVSGYGDKAASLQKGSVLKDGGENYEEGSILSG 542
F + ++ L ++++++ + + +G K A + + D E GS L+G
Sbjct: 359 TFQTKVCILDSLDQIIQHLAGRAGVFTNTAGL-QKLADIIQIVFSVDPSEG-GPGS-LAG 415
Query: 543 FQSLVDMLISLTNNDGDGRIIISKARPISSXXXXXXXXYLKYVMLTGEKVFSEIVEQA-H 601
+L + + + D R ++ S+ L Y + E+V Q
Sbjct: 416 LGALQSYKVHI-HPDAGHRQTAQRSDAWSTTAARKRGKVLSYWCFSPGLSMRELVRQGVR 474
Query: 602 AVILAGGTLQPIEETRERL---FPWLSPNKFHFFSCSHIVPPESILPVALSCGPTGKXXX 658
++IL GTL P+ + FP N HI+ I + GP G
Sbjct: 475 SLILTSGTLAPVSSFALEMQIPFPVCLENP-------HIIDKHQIWVGVVPRGPDGAQLS 527
Query: 659 XXXXXXXXXAMIEELGLLLCNLVSVVPEGIIVFFPSFEYVERVYGAWKSLGILDRIMKKK 718
+ LG L N VVP G+++FFPS+ +E+ W++ + ++ K
Sbjct: 528 SAFDRRFSEECLSSLGKALGNTARVVPCGLLIFFPSYPVMEKSLEFWRARDLARKMEALK 587
Query: 719 HVFREPRGNTHVESVLKEYQKTIDTLSSRPKEDSTPLNGAMLLAVVGGKISEGINFSDGM 778
+F EPR + Y + + P ST GA LAV GK SEG++FSD
Sbjct: 588 PLFVEPRSKGSFSETISAYYARV----AAP--GST---GATFLAVCRGKASEGLDFSDTN 638
Query: 779 GRCIVMVGLPYP---SPSNIELLERIKHIEGLGDTNSKTLN 816
GR +++ GLPYP P + ++ + ++G G + L+
Sbjct: 639 GRGVIVTGLPYPPRMDPRVVLKMQFLDEMKGQGGAGGQFLS 679
Score = 132 (51.5 bits), Expect = 4.9e-45, Sum P(4) = 4.9e-45
Identities = 30/80 (37%), Positives = 46/80 (57%)
Query: 842 GKEYYENLCMKAVNQSIGRAIRHINDHAAILLVDLRYASESSKRSCSHPANKLPRWIKDR 901
G+E+Y +AVNQ+IGR IRH D+ A+ L D R+A ++ +LP W++
Sbjct: 680 GQEWYRQQASRAVNQAIGRVIRHRQDYGAVFLCDHRFAFADARA-------QLPSWVRPH 732
Query: 902 LVSSTNNYGEVHRLLHQFFK 921
V +N+G V R + QFF+
Sbjct: 733 -VRVYDNFGHVIRDVAQFFR 751
Score = 114 (45.2 bits), Expect = 4.9e-45, Sum P(4) = 4.9e-45
Identities = 27/54 (50%), Positives = 34/54 (62%)
Query: 221 KVYFCSRTHSQLSQFIKELRKTVFANEIKVVCLGSRKNFCINEEVLRLGNSTHI 274
K+ + SRTHSQL+Q I ELR T + KV LGSR+ CI+ EV + S HI
Sbjct: 109 KIIYASRTHSQLTQVINELRNTSYRP--KVCVLGSREQLCIHPEVKKQ-ESNHI 159
Score = 91 (37.1 bits), Expect = 4.9e-45, Sum P(4) = 4.9e-45
Identities = 20/43 (46%), Positives = 27/43 (62%)
Query: 20 YSIQTDFM-KALYCSLENGGVSMLESPTGTGKTLSIICSALQW 61
Y Q ++M K L C L+ +LES TGTGKTL ++C+ L W
Sbjct: 18 YKCQQEYMTKVLEC-LQQKVNGILESHTGTGKTLCLLCTTLAW 59
Score = 37 (18.1 bits), Expect = 3.1e-35, Sum P(4) = 3.1e-35
Identities = 7/32 (21%), Positives = 14/32 (43%)
Query: 833 GILRSCRGRGKEYYENLCMKAVNQSIGRAIRH 864
G + R K+ +E +C++ + G H
Sbjct: 953 GFYQFVRPHHKQQFEEVCIQLTGRGCGYRPEH 984
>TAIR|locus:2016209 [details] [associations]
symbol:AT1G79950 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006139
"nucleobase-containing compound metabolic process" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0016817 "hydrolase activity, acting on acid
anhydrides" evidence=IEA] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0006346
"methylation-dependent chromatin silencing" evidence=RCA]
[GO:0007267 "cell-cell signaling" evidence=RCA] [GO:0009616 "virus
induced gene silencing" evidence=RCA] [GO:0009855 "determination of
bilateral symmetry" evidence=RCA] [GO:0010014 "meristem initiation"
evidence=RCA] [GO:0010073 "meristem maintenance" evidence=RCA]
[GO:0010267 "production of ta-siRNAs involved in RNA interference"
evidence=RCA] [GO:0016246 "RNA interference" evidence=RCA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=RCA] InterPro:IPR003822 InterPro:IPR006555
InterPro:IPR010614 InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307
PROSITE:PS51193 SMART:SM00491 INTERPRO:IPR013020 EMBL:CP002684
GO:GO:0005739 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0004003 InterPro:IPR014001 SMART:SM00487
TIGRFAMs:TIGR00604 Gene3D:1.20.1160.11 SUPFAM:SSF47762 KO:K11136
OMA:PFPPLKD IPI:IPI00530732 RefSeq:NP_178113.3 UniGene:At.34013
ProteinModelPortal:F4HQE2 SMR:F4HQE2 PRIDE:F4HQE2
EnsemblPlants:AT1G79950.1 GeneID:844335 KEGG:ath:AT1G79950
ArrayExpress:F4HQE2 Uniprot:F4HQE2
Length = 1040
Score = 217 (81.4 bits), Expect = 1.0e-44, Sum P(6) = 1.0e-44
Identities = 57/197 (28%), Positives = 98/197 (49%)
Query: 602 AVILAGGTLQPIEETRERL---FPWLSPNKFHFFSCSHIVPPESILPVALSCGPTGKXXX 658
++IL GTL P++ + L FP N H++ + +S GP+G
Sbjct: 484 SIILTSGTLSPMDSLAQELKLDFPIRLENP-------HVISSNQLWAGVVSTGPSGYVLN 536
Query: 659 XXXXXXXXXAMIEELGLLLCNLVSVVPEGIIVFFPSFEYVERVYGAWK------SLGILD 712
+ELG + N VVPEG+++FFPS+ ++ WK S+ + +
Sbjct: 537 SSYRNRDVPEYKQELGNAIVNFSRVVPEGLLIFFPSYYLMDSCITFWKNGCYRNSMTVWE 596
Query: 713 RIMKKKHVFREPRGNTHVESVLKEYQKTIDTLSSRPKEDSTPLNGAMLLAVVGGKISEGI 772
RI K K EP+ ++ + ++++ S + ++ +T +G + AV GK+SEG+
Sbjct: 597 RICKLKKPVIEPKDSSLFPAAMRDF-------SEKLQDRAT--SGVVFFAVCRGKVSEGL 647
Query: 773 NFSDGMGRCIVMVGLPY 789
+F+DG GR +V+ GLPY
Sbjct: 648 DFADGAGRAVVITGLPY 664
Score = 153 (58.9 bits), Expect = 1.0e-44, Sum P(6) = 1.0e-44
Identities = 30/68 (44%), Positives = 45/68 (66%)
Query: 332 LDIEDLVHLGRHMRTCPYYGSRSMVPTADLVVLPYQSLLSKSARESLGLNLKNNIVIIDE 391
+DIEDLV++G+ CPYY +R + D++ PY L+S R+ L +N N+++I DE
Sbjct: 231 VDIEDLVNIGKDSGPCPYYITRELHKDVDIIFAPYNYLISNGYRKFLKVNWTNSVLIFDE 290
Query: 392 AHNLADSL 399
AHNL +SL
Sbjct: 291 AHNL-ESL 297
Score = 117 (46.2 bits), Expect = 1.0e-44, Sum P(6) = 1.0e-44
Identities = 31/90 (34%), Positives = 47/90 (52%)
Query: 836 RSCRGRGKEYYENLCMKAVNQSIGRAIRHINDHAAILLVDLRYASESSKRSCSHPANKLP 895
RS G +Y +AVNQ+IGR IRH +D+ AI+ D R+ S + +K+
Sbjct: 692 RSTLLSGSMWYSQEAARAVNQAIGRVIRHRHDYGAIIFCDDRFEQPSQQ-------SKIS 744
Query: 896 RWIKDRLVSSTNNYGEVHRLLHQFFKFNKN 925
WI+ V + YGEV L +FF+ ++
Sbjct: 745 LWIRPN-VKCYSRYGEVISDLARFFRTERS 773
Score = 114 (45.2 bits), Expect = 1.0e-44, Sum P(6) = 1.0e-44
Identities = 23/44 (52%), Positives = 32/44 (72%)
Query: 222 VYFCSRTHSQLSQFIKELRKTVFANEIKVVCLGSRKNFCINEEV 265
+ + SRTHSQL Q IKEL+++ + K+V LGSR+ C+NEEV
Sbjct: 145 IVYASRTHSQLRQVIKELKRSSYRP--KMVVLGSREQLCVNEEV 186
Score = 102 (41.0 bits), Expect = 1.0e-44, Sum P(6) = 1.0e-44
Identities = 20/42 (47%), Positives = 28/42 (66%)
Query: 20 YSIQTDFMKALYCSLENGGVSMLESPTGTGKTLSIICSALQW 61
Y Q +M + SL+N ++LESPTGTGKTL ++C+ L W
Sbjct: 63 YQSQIIYMDRVIESLQNKCHALLESPTGTGKTLCLLCATLAW 104
Score = 38 (18.4 bits), Expect = 1.0e-44, Sum P(6) = 1.0e-44
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 481 INEFLFSLNIDNINLVKLLKYIKESNI 507
I E L SLNI + KL+ ++E+ +
Sbjct: 375 IYEMLKSLNITHETAPKLIGTVEEAAV 401
>TAIR|locus:2030497 [details] [associations]
symbol:AT1G20720 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0006139
"nucleobase-containing compound metabolic process" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0006261
"DNA-dependent DNA replication" evidence=RCA] InterPro:IPR006554
InterPro:IPR006555 InterPro:IPR010614 InterPro:IPR014013
Pfam:PF06733 Pfam:PF13307 PROSITE:PS51193 SMART:SM00488
SMART:SM00491 EMBL:CP002684 GO:GO:0005739 GO:GO:0005524
GO:GO:0003677 GO:GO:0004003 KO:K15362 OMA:EKELDDS IPI:IPI00524588
RefSeq:NP_173495.5 UniGene:At.51696 ProteinModelPortal:F4HUN4
SMR:F4HUN4 PRIDE:F4HUN4 EnsemblPlants:AT1G20720.1 GeneID:838662
KEGG:ath:AT1G20720 Uniprot:F4HUN4
Length = 1175
Score = 285 (105.4 bits), Expect = 1.4e-44, Sum P(4) = 1.4e-44
Identities = 91/314 (28%), Positives = 147/314 (46%)
Query: 592 VFSEIVEQAHAVILAGGTLQPIEETRERLFPWLSPNKFHFFSCSHIVPPE-SILPVALSC 650
VF ++ + + +VIL GTL P+ L + H++ P + A+S
Sbjct: 474 VFKDLADISLSVILTSGTLSPMNSFSSELGMQFGTS----LEAPHVIDPNMQVWAGAISN 529
Query: 651 GPTGKXXXXXXXXXXXXAMIEELGLLLCNLVSVVPEGIIVFFPSFEYVERVYGAWKSLGI 710
GP+ + + LG L + ++VP G +VFFPS++ +E++ W+
Sbjct: 530 GPSNYPLNASYKTADAYSFQDALGKSLEEICTIVPGGSLVFFPSYKLMEKLCMRWRETEQ 589
Query: 711 LDRIMKKKHVFREPRGNTHVE--SVLKEYQKTIDTLS-----SRPKEDSTPLN------- 756
R+ KK +F EPRG E SVLK Y +I + +R + + P+
Sbjct: 590 WSRLCLKKDLFVEPRGGAQDEFDSVLKGYYDSIRGKNKIIGRNRRAKKAGPIKTETQDDS 649
Query: 757 --GAMLLAVVGGKISEGINFSDGMGRCIVMVGLPYPSPSNIELLERIKHIEGLGDTNSKT 814
GA LAV GK+SEGI+F+D R +++VG+P+P+ +I++ GL K
Sbjct: 650 KKGAAFLAVCRGKVSEGIDFADDNARAVIIVGIPFPNLHDIQV--------GL----KKK 697
Query: 815 LNTSASDAYYNGDAQAGFGILRSCRGRGKEYYENLCMKAVNQSIGRAIRHINDHAAILLV 874
N D Y + + G G E+Y +A+NQ+ GR IRH D+ AI+ +
Sbjct: 698 YN----DTYKSSKSLLG----------GSEWYCQQAYRALNQAAGRCIRHRFDYGAIIFL 743
Query: 875 DLRYASESSKRSCS 888
D RY + ++ S S
Sbjct: 744 DERYKEQRNRASIS 757
Score = 162 (62.1 bits), Expect = 1.4e-44, Sum P(4) = 1.4e-44
Identities = 37/92 (40%), Positives = 52/92 (56%)
Query: 307 FSGCPVLRSH-KLQKGFRNEISQQGALDIEDLVHLGRHMRTCPYYGSRSMVPTADLVVLP 365
F + SH LQ NE+ DIEDLV +G+++R CPY+ S SM A LV P
Sbjct: 217 FKNVNKITSHPSLQPRGHNEVH-----DIEDLVKVGKNVRGCPYFASWSMAENAQLVFCP 271
Query: 366 YQSLLSKSARESLGLNLKNNIVIIDEAHNLAD 397
Y +++ R + ++LK I+I DEAHN+ D
Sbjct: 272 YSYIVNPVIRAGVEVDLKGAIIIFDEAHNMED 303
Score = 114 (45.2 bits), Expect = 1.4e-44, Sum P(4) = 1.4e-44
Identities = 23/57 (40%), Positives = 36/57 (63%)
Query: 222 VYFCSRTHSQLSQFIKELRKTVFANEIKVVCLGSRKNFCINEEVLRLGNSTHINERC 278
+Y+ SRTHSQ++Q I+E RKT + + + L SRK++C N VL N +++ C
Sbjct: 151 IYYASRTHSQITQVIREYRKTGY--RVPMAVLASRKHYCTNRHVLGKDN---VDDEC 202
Score = 94 (38.1 bits), Expect = 1.4e-44, Sum P(4) = 1.4e-44
Identities = 21/47 (44%), Positives = 30/47 (63%)
Query: 20 YSIQTDFMKALYCSLE----NGGV-SMLESPTGTGKTLSIICSALQW 61
Y Q FM + +L+ +G ++LESPTGTGK+LS++CS L W
Sbjct: 41 YGTQLAFMSRVISTLDRAQRDGHCHALLESPTGTGKSLSLLCSVLAW 87
>UNIPROTKB|D6RA96 [details] [associations]
symbol:RTEL1-TNFRSF6B "Protein RTEL1-TNFRSF6B" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] InterPro:IPR006554 InterPro:IPR006555
InterPro:IPR010614 InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307
PROSITE:PS51193 SMART:SM00488 SMART:SM00491 GO:GO:0005524
GO:GO:0003677 GO:GO:0004003 EMBL:AL121845 EMBL:AL353715
HOGENOM:HOG000007558 ProteinModelPortal:D6RA96 SMR:D6RA96
Ensembl:ENST00000492259 HGNC:HGNC:44095 ArrayExpress:D6RA96
Bgee:D6RA96 Uniprot:D6RA96
Length = 785
Score = 217 (81.4 bits), Expect = 1.5e-44, Sum P(5) = 1.5e-44
Identities = 65/229 (28%), Positives = 102/229 (44%)
Query: 595 EIVEQA-HAVILAGGTLQPIEETRERL---FPWLSPNKFHFFSCSHIVPPESILPVALSC 650
E+V Q ++IL GTL P+ + FP N HI+ I +
Sbjct: 494 ELVRQGVRSLILTSGTLAPVSSFALEMQIPFPVCLENP-------HIIDKHQIWVGVVPR 546
Query: 651 GPTGKXXXXXXXXXXXXAMIEELGLLLCNLVSVVPEGIIVFFPSFEYVERVYGAWKSLGI 710
GP G + LG L N+ VVP G+++FFPS+ +E+ W++ +
Sbjct: 547 GPDGAQLSSAFDRRFSEECLSSLGKALGNIARVVPYGLLIFFPSYPVMEKSLEFWRARDL 606
Query: 711 LDRIMKKKHVFREPRGNTHVESVLKEYQKTIDTLSSRPKEDSTPLNGAMLLAVVGGKISE 770
++ K +F EPR + Y + + P ST GA LAV GK SE
Sbjct: 607 ARKMEALKPLFVEPRSKGSFSETISAYYARV----AAP--GST---GATFLAVCRGKASE 657
Query: 771 GINFSDGMGRCIVMVGLPYP---SPSNIELLERIKHIEGLGDTNSKTLN 816
G++FSD GR +++ GLPYP P + ++ + ++G G + L+
Sbjct: 658 GLDFSDTNGRGVIVTGLPYPPRMDPRVVLKMQFLDEMKGQGGAGGQFLS 706
Score = 167 (63.8 bits), Expect = 1.5e-44, Sum P(5) = 1.5e-44
Identities = 33/77 (42%), Positives = 47/77 (61%)
Query: 319 QKGFRNEISQQGALDIEDLVHLGRHMRTCPYYGSRSMVPTADLVVLPYQSLLSKSARESL 378
+K E++ LDIEDLV G R CPYY SR++ AD++ +PY LL +R +
Sbjct: 180 EKSLEQELASP-ILDIEDLVKSGSKHRVCPYYLSRNLKQQADIIFMPYNYLLDAKSRRAH 238
Query: 379 GLNLKNNIVIIDEAHNL 395
++LK +VI DEAHN+
Sbjct: 239 NIDLKGTVVIFDEAHNV 255
Score = 112 (44.5 bits), Expect = 1.5e-44, Sum P(5) = 1.5e-44
Identities = 26/54 (48%), Positives = 34/54 (62%)
Query: 221 KVYFCSRTHSQLSQFIKELRKTVFANEIKVVCLGSRKNFCINEEVLRLGNSTHI 274
K+ + SRTHSQL+Q I ELR T + KV LGSR+ CI+ EV + S H+
Sbjct: 108 KIIYASRTHSQLTQVINELRNTSYRP--KVCVLGSREQLCIHPEVKKQ-ESNHL 158
Score = 100 (40.3 bits), Expect = 1.5e-44, Sum P(5) = 1.5e-44
Identities = 21/43 (48%), Positives = 28/43 (65%)
Query: 20 YSIQTDFM-KALYCSLENGGVSMLESPTGTGKTLSIICSALQW 61
Y Q ++M K L C L+ +LESPTGTGKTL ++C+ L W
Sbjct: 18 YKCQQEYMTKVLEC-LQQKVNGILESPTGTGKTLCLLCTTLAW 59
Score = 95 (38.5 bits), Expect = 1.5e-44, Sum P(5) = 1.5e-44
Identities = 18/36 (50%), Positives = 24/36 (66%)
Query: 842 GKEYYENLCMKAVNQSIGRAIRHINDHAAILLVDLR 877
G+E+Y +AVNQ+IGR IRH D+ A+ L D R
Sbjct: 707 GQEWYRQQASRAVNQAIGRVIRHRQDYGAVFLCDHR 742
>UNIPROTKB|A8WS58 [details] [associations]
symbol:rtel-1 "Regulator of telomere elongation helicase 1
homolog" species:6238 "Caenorhabditis briggsae" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0005524
"ATP binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0010569 "regulation of double-strand break repair via
homologous recombination" evidence=ISS] InterPro:IPR006554
InterPro:IPR006555 InterPro:IPR010614 InterPro:IPR014013
Pfam:PF06733 Pfam:PF13307 PROSITE:PS00690 PROSITE:PS51193
SMART:SM00488 SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524
GO:GO:0005634 GO:GO:0046872 GO:GO:0003677 GO:GO:0006281
GO:GO:0051539 GO:GO:0004003 GO:GO:0010569 eggNOG:COG1199
TIGRFAMs:TIGR00604 KO:K11136 EMBL:HE601486 RefSeq:XP_002639805.1
EnsemblMetazoa:CBG02256 GeneID:8581799 KEGG:cbr:CBG02256
CTD:8581799 WormBase:CBG02256 HOGENOM:HOG000154218 OMA:ENDIENQ
Uniprot:A8WS58
Length = 994
Score = 182 (69.1 bits), Expect = 4.5e-44, Sum P(6) = 4.5e-44
Identities = 41/88 (46%), Positives = 55/88 (62%)
Query: 324 NEISQQG-ALDIEDLVHLGRHMRTCPYYGSRSMVPTADLVVLPYQSLLSKSARESLGLNL 382
NEI ++G A+DIED V +G CPY+ SR TA+L++LPY ++ R L+L
Sbjct: 184 NEILEKGEAMDIEDFVKIGTQNSICPYFMSRQRSETAELILLPYNYIIDPKMRRRYKLDL 243
Query: 383 KNNIVIIDEAHNLADSLINMYNAKITLS 410
KN+IVI DEAHNL +S+ NA LS
Sbjct: 244 KNSIVIFDEAHNL-ESICES-NASAELS 269
Score = 178 (67.7 bits), Expect = 4.5e-44, Sum P(6) = 4.5e-44
Identities = 60/236 (25%), Positives = 104/236 (44%)
Query: 603 VILAGGTLQPIEETRERLFPW-LSPNKFHFFSCSHIVPPESILPVALSCGPTGKXXXXXX 661
V+LA GTL PI+ F + + N H + +L ++ G G
Sbjct: 485 VLLASGTLSPIQA-----FTYNMGLNFGAILENEHALKQVPVLTSIVTRGKHG-GLVGSF 538
Query: 662 XXXXXXAMIEELGLLLCNLVSVVPEGIIVFFPSFEYVERVYGAWKSL--GILD------- 712
+ ++G L ++ P+G++VFF S+ ++ + WK G D
Sbjct: 539 QNRKNIEYVSDVGESLIRVMETTPQGVLVFFSSYSQMDELVEVWKKTKRGASDSPETFWE 598
Query: 713 RIMKKKHVFREPRGNTHVESVLKEYQKTIDTLSSRPKEDSTPLNGAMLLAVVGGKISEGI 772
++ K K + EPR + +V Y + + S P +GA LLAV GK+SEGI
Sbjct: 599 KMEKTKKIAVEPRAKEQLAAVRLRYTQGV----SEP-------HGAALLAVCRGKVSEGI 647
Query: 773 NFSDGMGRCIVMVGLPYPSPSNIELLERIKHIEGLGDTNSKTLNTSASDAYYNGDA 828
+F D R +++VG+PYP + ++ + +++ L T +S +Y +A
Sbjct: 648 DFCDAESRAVIIVGIPYPPIHDERVVLKKMYLDDLMGRKDLTNEPQSSRDWYQMEA 703
Score = 120 (47.3 bits), Expect = 4.5e-44, Sum P(6) = 4.5e-44
Identities = 23/57 (40%), Positives = 36/57 (63%)
Query: 222 VYFCSRTHSQLSQFIKELRKTVFANEIKVVCLGSRKNFCINEEVLRLGNSTHINERC 278
+++ SRTHSQL Q + EL +T + +K LGSR++FCIN++V ++ S C
Sbjct: 105 IFYASRTHSQLEQVVHELNRTEY-KWVKTTILGSREHFCINQKVKKIKESNRQAHVC 160
Score = 110 (43.8 bits), Expect = 4.5e-44, Sum P(6) = 4.5e-44
Identities = 22/66 (33%), Positives = 39/66 (59%)
Query: 843 KEYYENLCMKAVNQSIGRAIRHINDHAAILLVDLRYASESSKRSCSHPANKLPRWIKDRL 902
+++Y+ +AVNQ+IGR +RH ND ++L+D RYAS + P P+W+++ +
Sbjct: 696 RDWYQMEAFRAVNQAIGRVLRHKNDFGTVVLIDTRYAS-------AKP-EMFPKWLRNTI 747
Query: 903 VSSTNN 908
+N
Sbjct: 748 SRCDSN 753
Score = 106 (42.4 bits), Expect = 4.5e-44, Sum P(6) = 4.5e-44
Identities = 23/43 (53%), Positives = 28/43 (65%)
Query: 20 YSIQTDFMKALYCSLENGGVSMLESPTGTGKTLSIICSALQWV 62
Y Q FMK + L+ + LESPTGTGKTLS++CS L WV
Sbjct: 26 YECQRIFMKNVIDVLDMKLDAALESPTGTGKTLSLLCSTLAWV 68
Score = 41 (19.5 bits), Expect = 4.5e-44, Sum P(6) = 4.5e-44
Identities = 9/20 (45%), Positives = 15/20 (75%)
Query: 452 LLKEKDENDVRQDSENSTGA 471
LL E++EN R++++N T A
Sbjct: 286 LLVEEEEN-AREEADNETEA 304
Score = 38 (18.4 bits), Expect = 6.8e-30, Sum P(6) = 6.8e-30
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 742 DTLSSRPKEDSTPLNGAMLLAVVGGKISEG 771
D L S P D +GA+LL + +G
Sbjct: 346 DQLKSVPPLDGKASDGAILLETLANSGCDG 375
>WB|WBGene00009124 [details] [associations]
symbol:rtel-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0016818 "hydrolase activity, acting on
acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0006139 "nucleobase-containing compound metabolic process"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0016817
"hydrolase activity, acting on acid anhydrides" evidence=IEA]
InterPro:IPR006554 InterPro:IPR006555 InterPro:IPR010614
InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307 PROSITE:PS00690
PROSITE:PS51193 SMART:SM00488 SMART:SM00491 INTERPRO:IPR013020
GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0006281 GO:GO:0051539 GO:GO:0004003 GO:GO:0010569
eggNOG:COG1199 TIGRFAMs:TIGR00604 GeneTree:ENSGT00530000063199
EMBL:Z79754 KO:K11136 OMA:PFPPLKD HOGENOM:HOG000154218 EMBL:Z83224
PIR:T21356 RefSeq:NP_492769.1 ProteinModelPortal:Q93575 SMR:Q93575
IntAct:Q93575 MINT:MINT-227415 STRING:Q93575 PaxDb:Q93575
EnsemblMetazoa:F25H2.13.1 EnsemblMetazoa:F25H2.13.2 GeneID:172946
KEGG:cel:CELE_F25H2.13 UCSC:F25H2.13 CTD:172946 WormBase:F25H2.13
InParanoid:Q93575 NextBio:877635 Uniprot:Q93575
Length = 994
Score = 180 (68.4 bits), Expect = 3.8e-43, Sum P(5) = 3.8e-43
Identities = 57/231 (24%), Positives = 105/231 (45%)
Query: 603 VILAGGTLQPIEETRERLFPW-LSPNKFHFFSCSHIVPPESILPVALSCGPTGKXXXXXX 661
V+LA GTL PI+ F + + N H + +L ++ G G
Sbjct: 487 VLLASGTLSPIQA-----FTYNMGLNFGAILENEHALKQVPVLTSIVTRGKRGGLAGSFQ 541
Query: 662 XXXXXXAMIEELGLLLCNLVSVVPEGIIVFFPSFEYVERVYGAWKSL--------GILDR 713
+ + L ++ V+P+GI++FF S+ ++ + WK+ ++
Sbjct: 542 NRKNLD-YVTGVAEALLRVMEVIPQGILIFFSSYSQMDELVATWKTTKWSSNSNESFWEK 600
Query: 714 IMKKKHVFREPRGNTHVESVLKEYQKTIDTLSSRPKEDSTPLNGAMLLAVVGGKISEGIN 773
+ K K V EPR + ++ Y + + E +GA LLAV GK+SEGI+
Sbjct: 601 MEKTKRVVVEPRAKEELAAIRLRYTQGVS-------EQ----HGAALLAVCRGKVSEGID 649
Query: 774 FSDGMGRCIVMVGLPYPSPSNIELLERIKHIEGL-GDTNSKTLNTSASDAY 823
F D R ++++G+PYP + ++ + +++ L G ++K+ S+ D Y
Sbjct: 650 FCDAESRAVIIIGIPYPPIHDERVVLKKMYLDDLMGRKDTKSERQSSQDWY 700
Score = 174 (66.3 bits), Expect = 3.8e-43, Sum P(5) = 3.8e-43
Identities = 39/98 (39%), Positives = 56/98 (57%)
Query: 325 EISQQG-ALDIEDLVHLGRHMRTCPYYGSRSMVPTADLVVLPYQSLLSKSARESLGLNLK 383
E +G A+DIED V LG CPY+ SR TA+L++LPY ++ R L+LK
Sbjct: 185 EFLDKGEAMDIEDFVKLGTQNSLCPYFMSRQRSETAELILLPYNYIIDPKMRRRYKLDLK 244
Query: 384 NNIVIIDEAHNLADSLINMYNAKITLSQLENVHSHLEK 421
N+IVI DEAHNL + +A++T + + L+K
Sbjct: 245 NSIVIFDEAHNLESICESNASAELTSTSIALCIEELKK 282
Score = 120 (47.3 bits), Expect = 3.8e-43, Sum P(5) = 3.8e-43
Identities = 23/57 (40%), Positives = 36/57 (63%)
Query: 222 VYFCSRTHSQLSQFIKELRKTVFANEIKVVCLGSRKNFCINEEVLRLGNSTHINERC 278
+++ SRTHSQL Q + EL +T + +K LGSR++FCIN++V ++ S C
Sbjct: 105 IFYASRTHSQLEQVVHELNRTEY-KWVKTTILGSREHFCINQKVKKIKESNRQAHVC 160
Score = 108 (43.1 bits), Expect = 3.8e-43, Sum P(5) = 3.8e-43
Identities = 23/43 (53%), Positives = 28/43 (65%)
Query: 20 YSIQTDFMKALYCSLENGGVSMLESPTGTGKTLSIICSALQWV 62
Y Q FMK + L+ + LESPTGTGKTLS++CS L WV
Sbjct: 26 YECQRIFMKNVVDVLDRKLDAALESPTGTGKTLSLLCSTLAWV 68
Score = 106 (42.4 bits), Expect = 3.8e-43, Sum P(5) = 3.8e-43
Identities = 27/86 (31%), Positives = 49/86 (56%)
Query: 836 RSCRGRGKEYYENLCMKAVNQSIGRAIRHINDHAAILLVDLRYASESSKRSCSHPANKLP 895
+S R +++Y+ +AVNQ+IGR +RH +D ++L+D RYAS + P P
Sbjct: 690 KSERQSSQDWYQMEAFRAVNQAIGRVLRHKDDFGTVVLMDTRYAS-------AKP-EMFP 741
Query: 896 RWIKDRLVSSTNNYGEVHRLLHQFFK 921
+W+++ +S ++ G + +FFK
Sbjct: 742 KWLRNT-ISRSDTDGCALKT-SRFFK 765
Score = 38 (18.4 bits), Expect = 4.7e-22, Sum P(4) = 4.7e-22
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 442 MVFTRAFLQVLLKEKDENDVRQDSEN 467
+V + +L L+ KD RQ S++
Sbjct: 673 VVLKKMYLDDLMGRKDTKSERQSSQD 698
>UNIPROTKB|Q93575 [details] [associations]
symbol:rtel-1 "Regulator of telomere elongation helicase 1
homolog" species:6239 "Caenorhabditis elegans" [GO:0005634
"nucleus" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0010569 "regulation of double-strand break repair via
homologous recombination" evidence=IGI] [GO:0004003 "ATP-dependent
DNA helicase activity" evidence=ISS] InterPro:IPR006554
InterPro:IPR006555 InterPro:IPR010614 InterPro:IPR014013
Pfam:PF06733 Pfam:PF13307 PROSITE:PS00690 PROSITE:PS51193
SMART:SM00488 SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524
GO:GO:0005634 GO:GO:0046872 GO:GO:0003677 GO:GO:0006281
GO:GO:0051539 GO:GO:0004003 GO:GO:0010569 eggNOG:COG1199
TIGRFAMs:TIGR00604 GeneTree:ENSGT00530000063199 EMBL:Z79754
KO:K11136 OMA:PFPPLKD HOGENOM:HOG000154218 EMBL:Z83224 PIR:T21356
RefSeq:NP_492769.1 ProteinModelPortal:Q93575 SMR:Q93575
IntAct:Q93575 MINT:MINT-227415 STRING:Q93575 PaxDb:Q93575
EnsemblMetazoa:F25H2.13.1 EnsemblMetazoa:F25H2.13.2 GeneID:172946
KEGG:cel:CELE_F25H2.13 UCSC:F25H2.13 CTD:172946 WormBase:F25H2.13
InParanoid:Q93575 NextBio:877635 Uniprot:Q93575
Length = 994
Score = 180 (68.4 bits), Expect = 3.8e-43, Sum P(5) = 3.8e-43
Identities = 57/231 (24%), Positives = 105/231 (45%)
Query: 603 VILAGGTLQPIEETRERLFPW-LSPNKFHFFSCSHIVPPESILPVALSCGPTGKXXXXXX 661
V+LA GTL PI+ F + + N H + +L ++ G G
Sbjct: 487 VLLASGTLSPIQA-----FTYNMGLNFGAILENEHALKQVPVLTSIVTRGKRGGLAGSFQ 541
Query: 662 XXXXXXAMIEELGLLLCNLVSVVPEGIIVFFPSFEYVERVYGAWKSL--------GILDR 713
+ + L ++ V+P+GI++FF S+ ++ + WK+ ++
Sbjct: 542 NRKNLD-YVTGVAEALLRVMEVIPQGILIFFSSYSQMDELVATWKTTKWSSNSNESFWEK 600
Query: 714 IMKKKHVFREPRGNTHVESVLKEYQKTIDTLSSRPKEDSTPLNGAMLLAVVGGKISEGIN 773
+ K K V EPR + ++ Y + + E +GA LLAV GK+SEGI+
Sbjct: 601 MEKTKRVVVEPRAKEELAAIRLRYTQGVS-------EQ----HGAALLAVCRGKVSEGID 649
Query: 774 FSDGMGRCIVMVGLPYPSPSNIELLERIKHIEGL-GDTNSKTLNTSASDAY 823
F D R ++++G+PYP + ++ + +++ L G ++K+ S+ D Y
Sbjct: 650 FCDAESRAVIIIGIPYPPIHDERVVLKKMYLDDLMGRKDTKSERQSSQDWY 700
Score = 174 (66.3 bits), Expect = 3.8e-43, Sum P(5) = 3.8e-43
Identities = 39/98 (39%), Positives = 56/98 (57%)
Query: 325 EISQQG-ALDIEDLVHLGRHMRTCPYYGSRSMVPTADLVVLPYQSLLSKSARESLGLNLK 383
E +G A+DIED V LG CPY+ SR TA+L++LPY ++ R L+LK
Sbjct: 185 EFLDKGEAMDIEDFVKLGTQNSLCPYFMSRQRSETAELILLPYNYIIDPKMRRRYKLDLK 244
Query: 384 NNIVIIDEAHNLADSLINMYNAKITLSQLENVHSHLEK 421
N+IVI DEAHNL + +A++T + + L+K
Sbjct: 245 NSIVIFDEAHNLESICESNASAELTSTSIALCIEELKK 282
Score = 120 (47.3 bits), Expect = 3.8e-43, Sum P(5) = 3.8e-43
Identities = 23/57 (40%), Positives = 36/57 (63%)
Query: 222 VYFCSRTHSQLSQFIKELRKTVFANEIKVVCLGSRKNFCINEEVLRLGNSTHINERC 278
+++ SRTHSQL Q + EL +T + +K LGSR++FCIN++V ++ S C
Sbjct: 105 IFYASRTHSQLEQVVHELNRTEY-KWVKTTILGSREHFCINQKVKKIKESNRQAHVC 160
Score = 108 (43.1 bits), Expect = 3.8e-43, Sum P(5) = 3.8e-43
Identities = 23/43 (53%), Positives = 28/43 (65%)
Query: 20 YSIQTDFMKALYCSLENGGVSMLESPTGTGKTLSIICSALQWV 62
Y Q FMK + L+ + LESPTGTGKTLS++CS L WV
Sbjct: 26 YECQRIFMKNVVDVLDRKLDAALESPTGTGKTLSLLCSTLAWV 68
Score = 106 (42.4 bits), Expect = 3.8e-43, Sum P(5) = 3.8e-43
Identities = 27/86 (31%), Positives = 49/86 (56%)
Query: 836 RSCRGRGKEYYENLCMKAVNQSIGRAIRHINDHAAILLVDLRYASESSKRSCSHPANKLP 895
+S R +++Y+ +AVNQ+IGR +RH +D ++L+D RYAS + P P
Sbjct: 690 KSERQSSQDWYQMEAFRAVNQAIGRVLRHKDDFGTVVLMDTRYAS-------AKP-EMFP 741
Query: 896 RWIKDRLVSSTNNYGEVHRLLHQFFK 921
+W+++ +S ++ G + +FFK
Sbjct: 742 KWLRNT-ISRSDTDGCALKT-SRFFK 765
Score = 38 (18.4 bits), Expect = 4.7e-22, Sum P(4) = 4.7e-22
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 442 MVFTRAFLQVLLKEKDENDVRQDSEN 467
+V + +L L+ KD RQ S++
Sbjct: 673 VVLKKMYLDDLMGRKDTKSERQSSQD 698
>GENEDB_PFALCIPARUM|MAL13P1.134 [details] [associations]
symbol:MAL13P1.134 "helicase, putative"
species:5833 "Plasmodium falciparum" [GO:0016020 "membrane"
evidence=ISS] InterPro:IPR006554 InterPro:IPR006555
InterPro:IPR010614 InterPro:IPR014013 InterPro:IPR027076
Pfam:PF06733 Pfam:PF13307 PROSITE:PS51193 SMART:SM00488
SMART:SM00491 GO:GO:0005524 GO:GO:0016020 GO:GO:0003677
GO:GO:0004003 EMBL:AL844509 KO:K11273 PANTHER:PTHR11472:SF5
RefSeq:XP_001349985.1 ProteinModelPortal:Q8IE72
EnsemblProtists:MAL13P1.134:mRNA GeneID:813685 KEGG:pfa:MAL13P1.134
EuPathDB:PlasmoDB:PF3D7_1324500 HOGENOM:HOG000281821
ProtClustDB:CLSZ2500734 Uniprot:Q8IE72
Length = 1099
Score = 270 (100.1 bits), Expect = 3.6e-40, Sum P(4) = 3.6e-40
Identities = 82/294 (27%), Positives = 135/294 (45%)
Query: 593 FSEIVEQAHAVILAGGTLQPIEETRERLFPWLSPNKFHFFSCSHIVPPESILPVALSCGP 652
F I + VIL GGTL P+EE LF + NK FS +I ++I S
Sbjct: 732 FQSITKDCSNVILIGGTLYPMEEFL-LLFLNYNKNKIKLFSSDYIFKKQNIFARIFSTNL 790
Query: 653 TGKXXXXXXXXXXXXA-MIEELGLLLCNLVSVVPEGIIVFFPSFEYVERVYGAWKSLG-- 709
+ L + + + + G I+FFPS+ ++ Y G
Sbjct: 791 ISSDFIDNTYKNRLKKDHLLNLAIYIYMITFNILYGNIIFFPSYNFLNDFYNFLNKEGEY 850
Query: 710 ILDRIMKKKHVFREPRGNTHVESVLKEYQKTIDTLSSRPKEDSTPLNGAMLLAVVGGKIS 769
I +RI KKK VF E + + ++++K Y I+ + + NG +L V+ GK+S
Sbjct: 851 IFNRIKKKKFVFFEKKND---DTIVKNYMNNIENIKNIDPNLRIQ-NGCILFCVMNGKLS 906
Query: 770 EGINFSDGMGRCIVMVGLPYPSPSNI--ELLERIKHIEGLGDTNSKTLNTSASDAYYNGD 827
EGINF D + R +V+VG+P+ ++ + L R+K+ + +NT D N
Sbjct: 907 EGINFYDDLCRNVVVVGIPFIKHDSVVDKNLLRLKYYR---EYTKDIMNTH--DKNDNTK 961
Query: 828 AQAGFGILRSCRGRGKEYYENLCMKAVNQSIGRAIRHINDHAAILLVDLRYASE 881
+ + C + Y MK +NQ IGR++RH+ND ++ +D R++ +
Sbjct: 962 ILIYDDVHKMC----ESYETKYAMKIINQCIGRSLRHVNDFSSFFFLDYRFSKK 1011
Score = 245 (91.3 bits), Expect = 3.6e-40, Sum P(4) = 3.6e-40
Identities = 67/246 (27%), Positives = 121/246 (49%)
Query: 221 KVYFCSRTHSQLSQFIKELRKTV--FANE--IKVVCLGSRKNFCINEEVLR-LGNSTHIN 275
+++ CSRT SQL+Q+ EL+K + I ++ +GSRK+ CINE L+ N +N
Sbjct: 223 QIFICSRTQSQLNQYFHELKKIEKKMGEDFSINMIIIGSRKHLCINEAFLKKYKNINELN 282
Query: 276 ERCLELQXXXXXXXXXXXX---LGAEGKVRRTKAFSGCPVLRSHKLQ-KGFRN-----EI 326
+ C + GK +R S C S + N ++
Sbjct: 283 DCCKNSKCKYKEIYNEKMSEKWKKKNGKKKRIFYDSSCSSNSSENEDIETIDNYILITKL 342
Query: 327 SQQGALDIEDLVHL--GRHMRTCPYYGSRSMVPTADLVVLPYQSLLSKSARESLGLNLKN 384
+DIED+ + H+ CPYY S+ + AD+++LPY +L+++ R +L +N+KN
Sbjct: 343 INNRNVDIEDIKDICKNEHIEICPYYLSKENIKNADIILLPYICILNENIRNNLKINIKN 402
Query: 385 NIVIIDEAHNLADSLINMYNAKITLSQLENVHSHLEKYFGRFCSLLGPGNRRYIQTLMVF 444
NIVI DE+ N+ +++ + + I+ + L +Y ++ ++L N I+ ++V+
Sbjct: 403 NIVIFDESQNIIENINSCNSVSISNHHILFCKIILNEYIKKYKNVLNNNNIIMIKQIIVY 462
Query: 445 TRAFLQ 450
L+
Sbjct: 463 CNLLLE 468
Score = 59 (25.8 bits), Expect = 3.6e-40, Sum P(4) = 3.6e-40
Identities = 30/128 (23%), Positives = 56/128 (43%)
Query: 43 ESPTGTGKTLSIICSALQWVVDXXXXXXXXXXYETMIKSDHSFTNNGDCSSNDEPDWMRN 102
E TG+GK+L+++ S + W+ IK N + S EPDW++
Sbjct: 91 EMKTGSGKSLTLLTSLIYWLWKHKMNLF-------FIKE------NIELKST-EPDWVKE 136
Query: 103 FVVNRDFQAEDAKIKK----KKNGCGLGKTGERKHREISTDTFSHSMEKDKCFTKKECEN 158
V+ + + I++ K+N + K K+ + D + + K+ +KK+CE
Sbjct: 137 SVIEKVIEKYKHNIQQDHKIKENNLNILK----KYFSFTDDKIA--LHKNIKISKKKCEQ 190
Query: 159 LQSI--ND 164
+ + ND
Sbjct: 191 HEPVQKND 198
Score = 52 (23.4 bits), Expect = 2.1e-20, Sum P(4) = 2.1e-20
Identities = 21/66 (31%), Positives = 35/66 (53%)
Query: 224 FCSRTHSQLSQFIKEL----RKTVFANEIKVVCLGSRKNF-CINEE---VLRLGNSTHIN 275
F T++ L+ F +E RK +F NEI+V+ + S NF I ++ V+ +G + +
Sbjct: 694 FNDDTYNNLNIFFEEFFVKKRKDLF-NEIEVISVSSCNNFQSITKDCSNVILIGGTLYPM 752
Query: 276 ERCLEL 281
E L L
Sbjct: 753 EEFLLL 758
Score = 38 (18.4 bits), Expect = 3.6e-40, Sum P(4) = 3.6e-40
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 20 YSIQTDFMKALYCSLENGGVSMLES 44
Y IQ +FM+ Y L + + ++
Sbjct: 18 YKIQLNFMRLFYQVLTSSNIKKYDN 42
Score = 38 (18.4 bits), Expect = 2.9e-16, Sum P(4) = 2.9e-16
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 813 KTLNTSASDAYYNGDAQAGF 832
K N SD +N D + GF
Sbjct: 675 KNKNIKMSDDNFNNDDKKGF 694
>UNIPROTKB|Q8IE72 [details] [associations]
symbol:MAL13P1.134 "DEAD box helicase, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0016020 "membrane"
evidence=ISS] InterPro:IPR006554 InterPro:IPR006555
InterPro:IPR010614 InterPro:IPR014013 InterPro:IPR027076
Pfam:PF06733 Pfam:PF13307 PROSITE:PS51193 SMART:SM00488
SMART:SM00491 GO:GO:0005524 GO:GO:0016020 GO:GO:0003677
GO:GO:0004003 EMBL:AL844509 KO:K11273 PANTHER:PTHR11472:SF5
RefSeq:XP_001349985.1 ProteinModelPortal:Q8IE72
EnsemblProtists:MAL13P1.134:mRNA GeneID:813685 KEGG:pfa:MAL13P1.134
EuPathDB:PlasmoDB:PF3D7_1324500 HOGENOM:HOG000281821
ProtClustDB:CLSZ2500734 Uniprot:Q8IE72
Length = 1099
Score = 270 (100.1 bits), Expect = 3.6e-40, Sum P(4) = 3.6e-40
Identities = 82/294 (27%), Positives = 135/294 (45%)
Query: 593 FSEIVEQAHAVILAGGTLQPIEETRERLFPWLSPNKFHFFSCSHIVPPESILPVALSCGP 652
F I + VIL GGTL P+EE LF + NK FS +I ++I S
Sbjct: 732 FQSITKDCSNVILIGGTLYPMEEFL-LLFLNYNKNKIKLFSSDYIFKKQNIFARIFSTNL 790
Query: 653 TGKXXXXXXXXXXXXA-MIEELGLLLCNLVSVVPEGIIVFFPSFEYVERVYGAWKSLG-- 709
+ L + + + + G I+FFPS+ ++ Y G
Sbjct: 791 ISSDFIDNTYKNRLKKDHLLNLAIYIYMITFNILYGNIIFFPSYNFLNDFYNFLNKEGEY 850
Query: 710 ILDRIMKKKHVFREPRGNTHVESVLKEYQKTIDTLSSRPKEDSTPLNGAMLLAVVGGKIS 769
I +RI KKK VF E + + ++++K Y I+ + + NG +L V+ GK+S
Sbjct: 851 IFNRIKKKKFVFFEKKND---DTIVKNYMNNIENIKNIDPNLRIQ-NGCILFCVMNGKLS 906
Query: 770 EGINFSDGMGRCIVMVGLPYPSPSNI--ELLERIKHIEGLGDTNSKTLNTSASDAYYNGD 827
EGINF D + R +V+VG+P+ ++ + L R+K+ + +NT D N
Sbjct: 907 EGINFYDDLCRNVVVVGIPFIKHDSVVDKNLLRLKYYR---EYTKDIMNTH--DKNDNTK 961
Query: 828 AQAGFGILRSCRGRGKEYYENLCMKAVNQSIGRAIRHINDHAAILLVDLRYASE 881
+ + C + Y MK +NQ IGR++RH+ND ++ +D R++ +
Sbjct: 962 ILIYDDVHKMC----ESYETKYAMKIINQCIGRSLRHVNDFSSFFFLDYRFSKK 1011
Score = 245 (91.3 bits), Expect = 3.6e-40, Sum P(4) = 3.6e-40
Identities = 67/246 (27%), Positives = 121/246 (49%)
Query: 221 KVYFCSRTHSQLSQFIKELRKTV--FANE--IKVVCLGSRKNFCINEEVLR-LGNSTHIN 275
+++ CSRT SQL+Q+ EL+K + I ++ +GSRK+ CINE L+ N +N
Sbjct: 223 QIFICSRTQSQLNQYFHELKKIEKKMGEDFSINMIIIGSRKHLCINEAFLKKYKNINELN 282
Query: 276 ERCLELQXXXXXXXXXXXX---LGAEGKVRRTKAFSGCPVLRSHKLQ-KGFRN-----EI 326
+ C + GK +R S C S + N ++
Sbjct: 283 DCCKNSKCKYKEIYNEKMSEKWKKKNGKKKRIFYDSSCSSNSSENEDIETIDNYILITKL 342
Query: 327 SQQGALDIEDLVHL--GRHMRTCPYYGSRSMVPTADLVVLPYQSLLSKSARESLGLNLKN 384
+DIED+ + H+ CPYY S+ + AD+++LPY +L+++ R +L +N+KN
Sbjct: 343 INNRNVDIEDIKDICKNEHIEICPYYLSKENIKNADIILLPYICILNENIRNNLKINIKN 402
Query: 385 NIVIIDEAHNLADSLINMYNAKITLSQLENVHSHLEKYFGRFCSLLGPGNRRYIQTLMVF 444
NIVI DE+ N+ +++ + + I+ + L +Y ++ ++L N I+ ++V+
Sbjct: 403 NIVIFDESQNIIENINSCNSVSISNHHILFCKIILNEYIKKYKNVLNNNNIIMIKQIIVY 462
Query: 445 TRAFLQ 450
L+
Sbjct: 463 CNLLLE 468
Score = 59 (25.8 bits), Expect = 3.6e-40, Sum P(4) = 3.6e-40
Identities = 30/128 (23%), Positives = 56/128 (43%)
Query: 43 ESPTGTGKTLSIICSALQWVVDXXXXXXXXXXYETMIKSDHSFTNNGDCSSNDEPDWMRN 102
E TG+GK+L+++ S + W+ IK N + S EPDW++
Sbjct: 91 EMKTGSGKSLTLLTSLIYWLWKHKMNLF-------FIKE------NIELKST-EPDWVKE 136
Query: 103 FVVNRDFQAEDAKIKK----KKNGCGLGKTGERKHREISTDTFSHSMEKDKCFTKKECEN 158
V+ + + I++ K+N + K K+ + D + + K+ +KK+CE
Sbjct: 137 SVIEKVIEKYKHNIQQDHKIKENNLNILK----KYFSFTDDKIA--LHKNIKISKKKCEQ 190
Query: 159 LQSI--ND 164
+ + ND
Sbjct: 191 HEPVQKND 198
Score = 52 (23.4 bits), Expect = 2.1e-20, Sum P(4) = 2.1e-20
Identities = 21/66 (31%), Positives = 35/66 (53%)
Query: 224 FCSRTHSQLSQFIKEL----RKTVFANEIKVVCLGSRKNF-CINEE---VLRLGNSTHIN 275
F T++ L+ F +E RK +F NEI+V+ + S NF I ++ V+ +G + +
Sbjct: 694 FNDDTYNNLNIFFEEFFVKKRKDLF-NEIEVISVSSCNNFQSITKDCSNVILIGGTLYPM 752
Query: 276 ERCLEL 281
E L L
Sbjct: 753 EEFLLL 758
Score = 38 (18.4 bits), Expect = 3.6e-40, Sum P(4) = 3.6e-40
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 20 YSIQTDFMKALYCSLENGGVSMLES 44
Y IQ +FM+ Y L + + ++
Sbjct: 18 YKIQLNFMRLFYQVLTSSNIKKYDN 42
Score = 38 (18.4 bits), Expect = 2.9e-16, Sum P(4) = 2.9e-16
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 813 KTLNTSASDAYYNGDAQAGF 832
K N SD +N D + GF
Sbjct: 675 KNKNIKMSDDNFNNDDKKGF 694
>RGD|1307659 [details] [associations]
symbol:Brip1 "BRCA1 interacting protein C-terminal helicase 1"
species:10116 "Rattus norvegicus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005737 "cytoplasm" evidence=ISO;IDA] [GO:0006357 "regulation
of transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0008285 "negative regulation of cell proliferation"
evidence=IDA] [GO:0031965 "nuclear membrane" evidence=ISO]
[GO:0071295 "cellular response to vitamin" evidence=IEP]
InterPro:IPR006555 InterPro:IPR010614 InterPro:IPR014013
Pfam:PF06733 Pfam:PF13307 PROSITE:PS51193 SMART:SM00491 RGD:1307659
INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0008285 GO:GO:0003677 GO:GO:0004003 TIGRFAMs:TIGR00604
IPI:IPI00781914 Ensembl:ENSRNOT00000055817 ArrayExpress:D4AD12
GO:GO:0071295 Uniprot:D4AD12
Length = 818
Score = 241 (89.9 bits), Expect = 9.3e-39, Sum P(5) = 9.3e-39
Identities = 57/222 (25%), Positives = 110/222 (49%)
Query: 582 LKYVMLTGEKVFSEIVEQAHAVILAGGTLQPIEETRERLFPWLSPNKFHFFSCSHIVPPE 641
L + L FS+I ++ ++L GTL P++ L + +H++
Sbjct: 512 LNFWCLNPAVAFSDINDKVRTIVLTSGTLSPLKSFSSELGVTFNIQ----LEANHVISNS 567
Query: 642 SILPVALSCGPTGKXXXXXXXXXXXXAMIEELGLLLCNLVSVVPEGIIVFFPSFEYVERV 701
+ + GP G+ +E+G+LL ++ V +GI+ F PS++ +E++
Sbjct: 568 QVWVGTVGSGPKGRNLCATFQHTETFEFQDEVGMLLLSVCQTVSQGILCFLPSYKLLEKL 627
Query: 702 YGAWKSLGILDRIMKKKHVFREPRGN--THVESVLKEYQKTIDTLSSRPKEDSTPLNGAM 759
W G+ + K V EP+G T + +L+ Y D + + ++D GA+
Sbjct: 628 RERWIFTGLWHSLESVKTVIAEPQGGEKTDFDELLQVYY---DAIKFKGEKD-----GAL 679
Query: 760 LLAVVGGKISEGINFSDGMGRCIVMVGLPYPSPSNIEL-LER 800
L+AV GK+SEG++FSD R ++ +G+P+P+ ++++ L+R
Sbjct: 680 LIAVCRGKVSEGLDFSDDNARAVITIGIPFPNVKDLQVELKR 721
Score = 128 (50.1 bits), Expect = 9.3e-39, Sum P(5) = 9.3e-39
Identities = 26/61 (42%), Positives = 41/61 (67%)
Query: 221 KVYFCSRTHSQLSQFIKELRKTVFANEIKVVCLGSRKNFCINEEVLRLGNSTHINERCLE 280
K+YF +RTH Q++Q +ELRKT ++ + + L SR + C++ EV+ GN NE+C+E
Sbjct: 242 KIYFGTRTHKQIAQITRELRKTAYSG-VPMTILSSRDHTCVHPEVV--GNFNR-NEKCME 297
Query: 281 L 281
L
Sbjct: 298 L 298
Score = 105 (42.0 bits), Expect = 9.3e-39, Sum P(5) = 9.3e-39
Identities = 25/80 (31%), Positives = 45/80 (56%)
Query: 842 GKEYYENLCMKAVNQSIGRAIRHINDHAAILLVDLRYASESSKRSCSHPANKLPRWIKDR 901
G+++YE +A+NQ++GR IRH ND A++LVD R+ + + R S L +W++ +
Sbjct: 736 GRQWYEIQAYRALNQALGRCIRHKNDWGALILVDDRF-NNNPDRYISG----LSKWVRQQ 790
Query: 902 LVSSTNNYGEVHRLLHQFFK 921
+ + + L +F K
Sbjct: 791 -IQHHSTFASALESLTEFSK 809
Score = 96 (38.9 bits), Expect = 9.3e-39, Sum P(5) = 9.3e-39
Identities = 18/42 (42%), Positives = 27/42 (64%)
Query: 20 YSIQTDFMKALYCSLENGGVSMLESPTGTGKTLSIICSALQW 61
Y Q M ++ L + +LESPTG+GK+L+++CSAL W
Sbjct: 22 YPAQLAMMNSIVRGLNSSQHCLLESPTGSGKSLALLCSALAW 63
Score = 63 (27.2 bits), Expect = 9.3e-39, Sum P(5) = 9.3e-39
Identities = 13/43 (30%), Positives = 22/43 (51%)
Query: 378 LGLNLKNNIVIIDEAHNLADSLINMYNAKITLSQLENVHSHLE 420
+ + LK +VI+DEAHN+ + + +T QL L+
Sbjct: 304 MDIKLKEQVVILDEAHNIEECARETASYSVTEVQLRFARDELD 346
>DICTYBASE|DDB_G0267414 [details] [associations]
symbol:repD "transcription factor IIH component"
species:44689 "Dictyostelium discoideum" [GO:0006974 "response to
DNA damage stimulus" evidence=IEA;IEP] [GO:0043141 "ATP-dependent
5'-3' DNA helicase activity" evidence=ISS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0006289 "nucleotide-excision repair" evidence=IEA;ISS]
[GO:0005675 "holo TFIIH complex" evidence=ISS] [GO:0005524 "ATP
binding" evidence=IEA;ISS] [GO:0000287 "magnesium ion binding"
evidence=ISS] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006139 "nucleobase-containing compound metabolic
process" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000443 "SSL2-core TFIIH complex portion
of holo TFIIH complex" evidence=ISS] [GO:0000442 "SSL2-core TFIIH
complex portion of NEF3 complex" evidence=ISS] [GO:0051539 "4 iron,
4 sulfur cluster binding" evidence=IEA] [GO:0051536 "iron-sulfur
cluster binding" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR001945 InterPro:IPR002464
InterPro:IPR006554 InterPro:IPR006555 InterPro:IPR010614
InterPro:IPR010643 InterPro:IPR014013 Pfam:PF06733 Pfam:PF06777
Pfam:PF13307 PRINTS:PR00852 PROSITE:PS00690 PROSITE:PS51193
SMART:SM00488 SMART:SM00491 dictyBase:DDB_G0267414
INTERPRO:IPR013020 GO:GO:0005524 GenomeReviews:CM000150_GR
GO:GO:0006355 GO:GO:0000287 GO:GO:0003677 EMBL:AAFI02000003
GO:GO:0051539 GO:GO:0006366 GO:GO:0006289 eggNOG:COG1199
TIGRFAMs:TIGR00604 KO:K10844 OMA:KDVDGKC EMBL:U77066
RefSeq:XP_647302.1 ProteinModelPortal:Q55G81 STRING:Q55G81
EnsemblProtists:DDB0191272 GeneID:8616111 KEGG:ddi:DDB_G0267414
ProtClustDB:CLSZ2431526 GO:GO:0000443 GO:GO:0000442 GO:GO:0043141
Uniprot:Q55G81
Length = 776
Score = 366 (133.9 bits), Expect = 1.2e-38, Sum P(3) = 1.2e-38
Identities = 144/606 (23%), Positives = 252/606 (41%)
Query: 220 LKVYFCSRTHSQLSQFIKELRKTV-FAN-EI-----KVVCLG--SRKNFCINEEVLRLGN 270
+K+ +CSRT ++ Q +E R+ + + N E+ K +C+ SR+N CI V +
Sbjct: 66 IKLIYCSRTVPEIEQATEEARRVLQYRNSEMGEESPKTLCMSMSSRRNLCIQPRVSEERD 125
Query: 271 STHINERCLELQXXXXXXXXXXXXLGAEGKVRRTKAFSGCPVLRSHKLQKGFRNEISQQG 330
++ C EL R + C + + G EI +G
Sbjct: 126 GKVVDALCRELTSSWN---------------RESPTSEKCKFFENFE-SNG--KEILLEG 167
Query: 331 ALDIEDLVHLGRHMRTCPYYGSRSMVPTADLVVLPYQSLLSKSARESLGLNL-KNNIVII 389
+EDL G + CPY+ SR M+ A++V+ YQ LL + + N+IV+
Sbjct: 168 VYSLEDLKEYGLKHQMCPYFLSRHMLNFANIVIFSYQYLLDPKIASLISSSFPSNSIVVF 227
Query: 390 DEAHNLADSLINMYNAKITLSQLENVHSHLEKYFGRFCSLLGPGNRRYIQTLMVFTRAFL 449
DEAHN+ + IN + I L+ ++ K + + +R
Sbjct: 228 DEAHNIDNVCINALSINIDNKLLDTSSKNIAKINKQIEDIKKVDEKRLKDEYQRLVNGLA 287
Query: 450 QVLLKEKDE--------NDVRQDSE--NSTGAKHAFDSSVAINEFLFS-LNIDNINLVKL 498
+ DE NDV Q++ N A+H + ++L S L +
Sbjct: 288 RSGSTRADETTSDPVLPNDVIQEAVPGNIRKAEHFISLLRRVVDYLKSRLKSQMLLSESP 347
Query: 499 LKYIKESNIIHKVSGYGDKAASLQKGSVLKDGGENYEEGSILSGFQSLVDMLISLTNNDG 558
L +++ ++S + S + S+L+ N + + SG + D +L
Sbjct: 348 LAFLQGLYHATQISSRTLRFCSSRLSSLLRTLRIN--DVNQFSGISLIADFA-TLVGTYN 404
Query: 559 DGRIIISKARPISSXXXXXXXXYLKYVMLTGEKVFSEIVEQAHAVILAGGTLQPIEETRE 618
+G +II + P ++ L I ++ +V++ GTL P++ +
Sbjct: 405 NGFLIIIE--PYYQRQNNTYDQIFQFCCLDASIGMKPIFDKYRSVVITSGTLSPLDIYTK 462
Query: 619 RLFPWLSPNKFHFFSCSHIVPPESILPVALSCGPTGKXXXXXXXXXXXXAMIEELGLLLC 678
L P + S + I P L+ G A++ G LL
Sbjct: 463 MLN--FRPTVVERLTMS--LNRNCICPCILTRGSDQISISTKFDVRSDTAVVRNYGALLV 518
Query: 679 NLVSVVPEGIIVFFPSFEYVERVYGAWKSLGILDRIMKKKHVFREPRGNTHVESVLKEYQ 738
+ ++VP+GII FF S+ Y+E++ W +G+L+ I+ K +F E L+ Y+
Sbjct: 519 EVSAIVPDGIICFFTSYSYMEQIVSVWNEMGLLNNILTNKLIFVETSDPAESALALQNYK 578
Query: 739 KTIDTLSSRPKEDSTPLNGAMLLAVVGGKISEGINFSDGMGRCIVMVGLPYPSPSNIELL 798
K D S R GA+LL+V GK+SEGI+F + GRC+++ G+PY + + L
Sbjct: 579 KACD--SGR---------GAVLLSVARGKVSEGIDFDNQYGRCVILYGIPYINTESKVLR 627
Query: 799 ERIKHI 804
R++ +
Sbjct: 628 ARLEFL 633
Score = 93 (37.8 bits), Expect = 1.2e-38, Sum P(3) = 1.2e-38
Identities = 19/36 (52%), Positives = 26/36 (72%)
Query: 20 YSIQTDFMKALYCSLENGGVSMLESPTGTGKTLSII 55
Y Q +M AL SL+NGG +LE P+GTGKT+S++
Sbjct: 18 YPEQYSYMVALKRSLDNGGPCILEMPSGTGKTVSLL 53
Score = 78 (32.5 bits), Expect = 1.2e-38, Sum P(3) = 1.2e-38
Identities = 20/58 (34%), Positives = 30/58 (51%)
Query: 841 RGKEYYENLCMKAVNQSIGRAIRHINDHAAILLVDLRYASESSKRSCSHPANKLPRWI 898
R E+ M+ +Q +GR IR +D+ ++ D RY + KR NKLP+WI
Sbjct: 640 RENEFLTFDAMRTASQCVGRVIRGKSDYGIMIFADKRY-NRLDKR------NKLPQWI 690
>WB|WBGene00001049 [details] [associations]
symbol:dog-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0016818 "hydrolase activity, acting on
acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0006139 "nucleobase-containing compound metabolic process"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006974
"response to DNA damage stimulus" evidence=IMP] [GO:0043570
"maintenance of DNA repeat elements" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0000723 "telomere maintenance"
evidence=IMP] [GO:0006289 "nucleotide-excision repair"
evidence=IGI;IMP] [GO:0090329 "regulation of DNA-dependent DNA
replication" evidence=IGI;IMP] InterPro:IPR002464
InterPro:IPR006554 InterPro:IPR006555 InterPro:IPR010614
InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307 PROSITE:PS00690
PROSITE:PS51193 SMART:SM00488 SMART:SM00491 GO:GO:0005524
GO:GO:0003677 GO:GO:0000003 GO:GO:0004003 GO:GO:0000723
GO:GO:0006289 GO:GO:0043570 eggNOG:COG1199
GeneTree:ENSGT00530000063199 GO:GO:0090329 KO:K15362 EMBL:Z81526
PIR:T21711 RefSeq:NP_493618.1 ProteinModelPortal:O62217 SMR:O62217
STRING:O62217 PaxDb:O62217 EnsemblMetazoa:F33H2.1.1
EnsemblMetazoa:F33H2.1.2 GeneID:173370 KEGG:cel:CELE_F33H2.1
UCSC:F33H2.1 CTD:173370 WormBase:F33H2.1 HOGENOM:HOG000021716
InParanoid:O62217 OMA:EKELDDS NextBio:879367 Uniprot:O62217
Length = 983
Score = 219 (82.2 bits), Expect = 1.8e-37, Sum P(4) = 1.8e-37
Identities = 61/238 (25%), Positives = 107/238 (44%)
Query: 593 FSEIVEQAHAVILAGGTLQPIEETRERLFPWLSPNKFHFFSCSHIVPPESILPVALSCGP 652
F + + +++LA GTL P++ + L ++ ++I L GP
Sbjct: 673 FFDAFNETRSIVLASGTLCPMDTLKTELGMEFKQQ----VEGDQVINKDNIFAAVLPIGP 728
Query: 653 TGKXXXXXXXXXXX--XAMIEELGLLLCNLVSVVPEGIIVFFPSFEYVERVYGAWKSLGI 710
G + ELG ++ + S VP GI+ F PS+ ++++
Sbjct: 729 FGNRIQCTYRNTSDPESSFYCELGAIIKYVCSNVPAGILCFLPSYRVLDQLKQCMIRNST 788
Query: 711 LDRIMKKKHVFREPRGNTHVESVLKEYQKTIDTLSSRPKEDSTPLNGAMLLAVVGGKISE 770
+ +I KK V EPR ++ + SV+ ++ I P +NG+++ AV GK+SE
Sbjct: 789 MRQIEMKKVVLYEPRRSSELTSVMDQFDAAIFD----PSRFGANINGSLMFAVFRGKVSE 844
Query: 771 GINFSDGMGRCIVMVGLPYPSPSNIELLERIKHIEGLGDTNSKTLNTSASDAYYNGDA 828
GI+F+D R ++ VG+PYP+ + ++ K + D NSK D +Y A
Sbjct: 845 GIDFADDRARVVISVGIPYPNAMDDQV--NAKKL--YNDQNSKEKGILTGDEWYTTQA 898
Score = 183 (69.5 bits), Expect = 1.8e-37, Sum P(4) = 1.8e-37
Identities = 54/198 (27%), Positives = 95/198 (47%)
Query: 220 LKVYFCSRTHSQLSQFIKELRKTVFANEIKVVCLGSRKNFCINEEVLRLGNSTHINERCL 279
+++Y+ +RTH Q++Q +KE + +A +K L SR+ CIN + + I++ C
Sbjct: 238 VRIYYGTRTHKQIAQVVKEFSRLPYAKILKHTILASREQSCINPAARKHAD---ISQYCK 294
Query: 280 ELQXXXXXXXXXXXXLGAEGKVRRTKAFSGCPVLRSHKLQKGFRNEISQQGALDIEDLVH 339
E+ + K R KA P LR H + G D+E +V
Sbjct: 295 EVNSAHSIGCSFKSAM----KPRFEKAL---P-LRDHLERNG-------TVVFDMEKIVE 339
Query: 340 -LG-RHMRTCPYYGS-RSMVPTADLVVLPYQSLLSKSARESLGLNLKNNIVIIDEAHNLA 396
L + + CPY+ + R + AD++ P+ L+ R S + ++N+IVI+DEAHN+
Sbjct: 340 TLAISYPQLCPYFSTNRILTQDADIIFCPFSYLVDPLIRNSSDVQIRNSIVILDEAHNIE 399
Query: 397 DSLINMYNAKITLSQLEN 414
D+ + T +L++
Sbjct: 400 DTCREAASFSFTEKELDD 417
Score = 109 (43.4 bits), Expect = 1.8e-37, Sum P(4) = 1.8e-37
Identities = 26/94 (27%), Positives = 47/94 (50%)
Query: 842 GKEYYENLCMKAVNQSIGRAIRHINDHAAILLVDLRYASESSKRSCSHPANKLPRWIKDR 901
G E+Y +A+NQ++GR +RH ND A+L++D R ++ + ++ +WI+ +
Sbjct: 890 GDEWYTTQAYRALNQALGRCLRHKNDWGAMLMIDERLERQTGNLVGGASSARVSKWIRAQ 949
Query: 902 LVSSTN------NYGEVHRLLHQFFKFNKNRGCQ 929
L S + N+ E + H K K C+
Sbjct: 950 LKSYPSFKEFNANFREFIQRRHAVEKAKKENFCE 983
Score = 76 (31.8 bits), Expect = 1.8e-37, Sum P(4) = 1.8e-37
Identities = 15/43 (34%), Positives = 26/43 (60%)
Query: 20 YSIQTDFMKALYCSLENGGVSMLESPTGTGKTLSIICSALQWV 62
YS Q + + +L+N + ESPTG+GKT++++ S W+
Sbjct: 91 YSTQKLMIVRILTALKNSQNVLGESPTGSGKTMALLASTCAWL 133
>POMBASE|SPAC1D4.12 [details] [associations]
symbol:rad15 "transcription factor TFIIH complex subunit
Rad15" species:4896 "Schizosaccharomyces pombe" [GO:0000112
"nucleotide-excision repair factor 3 complex" evidence=IGI]
[GO:0000439 "core TFIIH complex" evidence=ISO] [GO:0000717
"nucleotide-excision repair, DNA duplex unwinding" evidence=IGI]
[GO:0000991 "core RNA polymerase II binding transcription factor
activity" evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IC] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005675 "holo TFIIH complex" evidence=ISO]
[GO:0005829 "cytosol" evidence=IDA] [GO:0006367 "transcription
initiation from RNA polymerase II promoter" evidence=ISO]
[GO:0043141 "ATP-dependent 5'-3' DNA helicase activity"
evidence=ISO] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA]
InterPro:IPR001945 InterPro:IPR006554 InterPro:IPR006555
InterPro:IPR010614 InterPro:IPR010643 InterPro:IPR014013
Pfam:PF06733 Pfam:PF06777 Pfam:PF13307 PRINTS:PR00852
PROSITE:PS00690 PROSITE:PS51193 SMART:SM00488 SMART:SM00491
PomBase:SPAC1D4.12 INTERPRO:IPR013020 GO:GO:0005829 GO:GO:0005524
EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0046872 GO:GO:0003677
GO:GO:0051539 GO:GO:0006367 GO:GO:0000991 GO:GO:0005675
eggNOG:COG1199 TIGRFAMs:TIGR00604 HOGENOM:HOG000205390 KO:K10844
OMA:KDVDGKC GO:GO:0043141 GO:GO:0000717 GO:GO:0000439 GO:GO:0000112
EMBL:X64583 EMBL:X60499 PIR:S22660 RefSeq:NP_593025.1
ProteinModelPortal:P26659 IntAct:P26659 STRING:P26659
EnsemblFungi:SPAC1D4.12.1 GeneID:2542203 KEGG:spo:SPAC1D4.12
OrthoDB:EOG4G1QQH NextBio:20803273 Uniprot:P26659
Length = 772
Score = 222 (83.2 bits), Expect = 1.8e-35, Sum P(5) = 1.8e-35
Identities = 65/268 (24%), Positives = 115/268 (42%)
Query: 538 SILSGFQSLVDMLISLTNNDGDGRIIISKARPISSXXXXXXXXYLKYVMLTGEKVFSEIV 597
S++ F SL ++ T R I P + L++ L +
Sbjct: 388 SLVEDFHSLQQVVAFATLVATYERGFILILEPFETENATVPNPILRFSCLDASIAIKPVF 447
Query: 598 EQAHAVILAGGTLQPIEETRERLFP-WLSPNKFHFFSCSHIVPPESILPVALSCGPTGKX 656
E+ +VI+ GTL P++ ++P L N S + LP+ ++ G
Sbjct: 448 ERFRSVIITSGTLSPLD-----MYPKMLQFNTVMQESYGMSLARNCFLPMVVTRGSDQVA 502
Query: 657 XXXXXXXXXXXAMIEELGLLLCNLVSVVPEGIIVFFPSFEYVERVYGAWKSLGILDRIMK 716
+++ G +L + P+G++ FFPS+ Y+E + +W+S+GILD + K
Sbjct: 503 ISSKFEARNDPSVVRNYGNILVEFSKITPDGLVAFFPSYLYLESIVSSWQSMGILDEVWK 562
Query: 717 KKHVFREPRGNTHVESVLKEYQKTIDTLSSRPKEDSTPLNGAMLLAVVGGKISEGINFSD 776
K + E L+ Y+ + R GA+LL+V GK+SEG++F
Sbjct: 563 YKLILVETPDPHETTLALETYRAACS--NGR---------GAVLLSVARGKVSEGVDFDH 611
Query: 777 GMGRCIVMVGLPYPSPSNIELLERIKHI 804
GR ++M G+PY + L R++ +
Sbjct: 612 HYGRAVIMFGIPYQYTESRVLKARLEFL 639
Score = 166 (63.5 bits), Expect = 1.8e-35, Sum P(5) = 1.8e-35
Identities = 55/203 (27%), Positives = 89/203 (43%)
Query: 221 KVYFCSRTHSQLSQFIKELRKTV------FANEIKVVCLG--SRKNFCINEEVLRLGNST 272
K+ +CSRT S++ + + EL++ + E + LG SRKN C++ V R N
Sbjct: 68 KLIYCSRTMSEIDKALAELKRLMAYRTSQLGYEEPFLGLGLTSRKNLCLHPSVRREKNGN 127
Query: 273 HINERCLELQXXXXXXXXXXXXLGAEGKVRRTK-AFSGCPVLRSH-KLQKGFRNEISQQG 330
++ RC L G VR + A P H L+ + + G
Sbjct: 128 VVDARCRSLTA---------------GFVREQRLAGMDVPTCEFHDNLEDLEPHSLISNG 172
Query: 331 ALDIEDLVHLGRHMRTCPYYGSRSMVPTADLVVLPYQSLLSKSARESLGLNL-KNNIVII 389
++D+ G CPY+ R M+P ++++ Y LL E + L K+ IV+
Sbjct: 173 VWTLDDITEYGEKTTRCPYFTVRRMLPFCNVIIYSYHYLLDPKIAERVSRELSKDCIVVF 232
Query: 390 DEAHNLADSLINMYNAKITLSQL 412
DEAHN+ + I + +T S L
Sbjct: 233 DEAHNIDNVCIESLSIDLTESSL 255
Score = 87 (35.7 bits), Expect = 1.8e-35, Sum P(5) = 1.8e-35
Identities = 17/36 (47%), Positives = 26/36 (72%)
Query: 20 YSIQTDFMKALYCSLENGGVSMLESPTGTGKTLSII 55
Y Q +M L SL+ GG+++LE P+GTGKT+S++
Sbjct: 18 YPEQYQYMCDLKHSLDAGGIALLEMPSGTGKTISLL 53
Score = 85 (35.0 bits), Expect = 1.8e-35, Sum P(5) = 1.8e-35
Identities = 20/58 (34%), Positives = 30/58 (51%)
Query: 851 MKAVNQSIGRAIRHINDHAAILLVDLRYASESSKRSCSHPANKLPRWIKDRLVSSTNN 908
M+ Q +GR +R +DH ++L D RY S KR+ KLP+WI+ + N
Sbjct: 656 MRHAAQCLGRVLRGKDDHGIMVLADKRYG-RSDKRT------KLPKWIQQYITEGATN 706
Score = 41 (19.5 bits), Expect = 1.8e-35, Sum P(5) = 1.8e-35
Identities = 19/99 (19%), Positives = 46/99 (46%)
Query: 432 PGNRRYIQTLMVFTRAFLQVLLKEKDENDVRQDSENSTGAKHAFDSSVAINEFLFSLNID 491
PGN R + + F + F++ L V ++ S +H D + I++ +
Sbjct: 319 PGNIRRAEHFIAFLKRFVEYLKTRMKVLHVIAETPTSF-LQHVKDITF-IDKKPLRFCAE 376
Query: 492 NI-NLVKLLKY--IKESNIIHKVSGYGDKAASLQKGSVL 527
+ +LV+ L+ +++ + + +V + A+ ++G +L
Sbjct: 377 RLTSLVRALQISLVEDFHSLQQVVAFATLVATYERGFIL 415
>UNIPROTKB|Q91941 [details] [associations]
symbol:ERCC2/XPD "ERCC2/XPD protein" species:8083
"Xiphophorus maculatus" [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=ISS] [GO:0006917 "induction of
apoptosis" evidence=ISS] [GO:0043139 "5'-3' DNA helicase activity"
evidence=ISS] InterPro:IPR001945 InterPro:IPR002464
InterPro:IPR006554 InterPro:IPR006555 InterPro:IPR010614
InterPro:IPR010643 InterPro:IPR014013 Pfam:PF06733 Pfam:PF06777
Pfam:PF13307 PRINTS:PR00852 PROSITE:PS00690 PROSITE:PS51193
SMART:SM00488 SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524
GO:GO:0005634 GO:GO:0006917 GO:GO:0003677 GO:GO:0004003
GO:GO:0006283 TIGRFAMs:TIGR00604 GO:GO:0043139 HOVERGEN:HBG051498
EMBL:U17896 PIR:I51720 ProteinModelPortal:Q91941 Uniprot:Q91941
Length = 760
Score = 229 (85.7 bits), Expect = 3.3e-35, Sum P(5) = 3.3e-35
Identities = 66/260 (25%), Positives = 117/260 (45%)
Query: 545 SLVDMLISLTNNDGDGRIIISKARPISSXXXXXXXXYLKYVMLTGEKVFSEIVEQAHAVI 604
+L+ +L + G II + P L + + + ++ +VI
Sbjct: 398 TLISNFATLVSTYSQGFTIIIE--PFEDRTPTIANPVLHFSCMDPSIAIKPVFQRFQSVI 455
Query: 605 LAGGTLQPIEETRERLFPWLSPNKFHFFSCSHIVPPESILPVALSCGPTGKXXXXXXXXX 664
+ GTL P++ R+ + P F+ + + + P+ + G
Sbjct: 456 ITSGTLSPLD-IYPRILDF-RPVTMASFTMT--LARTCLCPLIVGRGNDQVALSSKFETR 511
Query: 665 XXXAMIEELGLLLCNLVSVVPEGIIVFFPSFEYVERVYGAWKSLGILDRIMKKKHVFREP 724
A+I G LL + +VVP+GI+ FF S+ Y+E + +W GIL+ I K K +F E
Sbjct: 512 EDFAVIRNYGNLLLEMSAVVPDGIVAFFTSYVYMENIVASWYEQGILENIQKNKLIFIET 571
Query: 725 RGNTHVESVLKEYQKTIDTLSSRPKEDSTPLNGAMLLAVVGGKISEGINFSDGMGRCIVM 784
+ L++YQ+ + + R GA+LL+V GK+SEGI+F GR ++M
Sbjct: 572 QDAAETSMALEKYQEACE--NGR---------GAILLSVARGKVSEGIDFVHHFGRAVIM 620
Query: 785 VGLPYPSPSNIELLERIKHI 804
G+PY + L R++++
Sbjct: 621 FGVPYVYTQSRILKARLEYL 640
Score = 175 (66.7 bits), Expect = 3.3e-35, Sum P(5) = 3.3e-35
Identities = 56/212 (26%), Positives = 99/212 (46%)
Query: 219 VLKVYFCSRTHSQLSQFIKELRKTV--FA------NEIKVVCLGSRKNFCINEEVLRLGN 270
V K+ +CSRT ++ + ++ELRK + +A N + L SRKN CI+ EV L
Sbjct: 67 VTKLIYCSRTVPEIEKVVEELRKLMEFYAKETGEVNNFLALSLSSRKNLCIHPEVSSLRF 126
Query: 271 STHINERCLELQXXXXXXXXXXXXLGAEGKVRRTKAFSGCPVLRSHKLQKGFRNEIS-QQ 329
++ +C L + A+ R + PV R ++ ++
Sbjct: 127 GKEVDGKCHSL---------TASYIRAQ---RHSNPNQ--PVCRFYEEFDAVGRQVPLPA 172
Query: 330 GALDIEDLVHLGRHMRTCPYYGSRSMVPTADLVVLPYQSLLSKSARESLGLNL-KNNIVI 388
G +++DL GR CPYY +R + A++VV Y LL + + L K ++V+
Sbjct: 173 GIYNLDDLKDFGRRKGWCPYYLARYSILHANIVVYSYHYLLDPKIADLVSKELAKKSVVV 232
Query: 389 IDEAHNLADSLINMYNAKITLSQLENVHSHLE 420
DEAHN+ + I+ + IT ++ ++++
Sbjct: 233 FDEAHNIDNVCIDSMSVNITRRTVDRCQNNVD 264
Score = 86 (35.3 bits), Expect = 3.3e-35, Sum P(5) = 3.3e-35
Identities = 22/58 (37%), Positives = 31/58 (53%)
Query: 851 MKAVNQSIGRAIRHINDHAAILLVDLRYASESSKRSCSHPANKLPRWIKDRLVSSTNN 908
M+ Q +GRAIR D+ ++ D RYA S KR KLPRWI++ + + N
Sbjct: 657 MRHAAQCLGRAIRGKTDYGLMIFADKRYA-RSDKRG------KLPRWIQEHINDGSLN 707
Score = 70 (29.7 bits), Expect = 3.3e-35, Sum P(5) = 3.3e-35
Identities = 15/36 (41%), Positives = 23/36 (63%)
Query: 20 YSIQTDFMKALYCSLENGGVSMLESPTGTGKTLSII 55
Y Q +M L +L+ G +LE P+GTGKT+S++
Sbjct: 18 YPEQYSYMLELKRTLDAKGHGVLEMPSGTGKTISLL 53
Score = 37 (18.1 bits), Expect = 3.3e-35, Sum P(5) = 3.3e-35
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 432 PGNRRYIQTLMVFTRAFLQVLLKEKDENDVRQDS 465
PG+ R + + F R FL+ L V Q+S
Sbjct: 320 PGSIRTAEHFVGFLRRFLEYLKARLRVQHVVQES 353
>UNIPROTKB|G3N0I3 [details] [associations]
symbol:BRIP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR006555 InterPro:IPR010614 InterPro:IPR014013
Pfam:PF06733 Pfam:PF13307 PROSITE:PS51193 SMART:SM00491
INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0004003 TIGRFAMs:TIGR00604 GeneTree:ENSGT00530000063199
EMBL:DAAA02048371 Ensembl:ENSBTAT00000065712 Uniprot:G3N0I3
Length = 756
Score = 239 (89.2 bits), Expect = 1.6e-34, Sum P(4) = 1.6e-34
Identities = 63/253 (24%), Positives = 121/253 (47%)
Query: 551 ISLTNNDGDGRIIISKARPISSXXXXXXXXYLKYVMLTGEKVFSEIVEQAHAVILAGGTL 610
I+ ++ G +I+SK + L + L FS+I + A++L GTL
Sbjct: 421 INQSDTTDHGLLILSKNK--KRLRQKAAVRVLNFWCLNPAVAFSDINGKVWAIVLTSGTL 478
Query: 611 QPIEETRERLFPWLSPNKFHFFSCSHIVPPESILPVALSCGPTGKXXXXXXXXXXXXAMI 670
P++ L + +H++ + + GP G+
Sbjct: 479 SPMKSFSSELGVTFTIQ----LEANHVINNSQVWVGTIGSGPKGRSLCATFQHTETFEFQ 534
Query: 671 EELGLLLCNLVSVVPEGIIVFFPSFEYVERVYGAWKSLGILDRIMKKKHVFREPRGNTHV 730
+E+G LL ++ + +GI+ F PS++ +E++ W S G+ + K V EP+G +
Sbjct: 535 DEVGALLLSVCQTISQGILCFLPSYKLLEKLKERWLSTGLWYNLELVKTVIVEPQGGEKI 594
Query: 731 E--SVLKEYQKTIDTLSSRPKEDSTPLNGAMLLAVVGGKISEGINFSDGMGRCIVMVGLP 788
+ +L+ Y D + + ++D GA+L+AV GK+SEG++FSD R +V +G+P
Sbjct: 595 DFDELLQMYY---DAIKYKGEKD-----GALLVAVCRGKVSEGLDFSDDNARAVVTIGIP 646
Query: 789 YPSPSNIEL-LER 800
+P+ ++++ L+R
Sbjct: 647 FPNVKDLQVELKR 659
Score = 122 (48.0 bits), Expect = 1.6e-34, Sum P(4) = 1.6e-34
Identities = 24/61 (39%), Positives = 41/61 (67%)
Query: 221 KVYFCSRTHSQLSQFIKELRKTVFANEIKVVCLGSRKNFCINEEVLRLGNSTHINERCLE 280
K+YF +RTH Q++Q +EL++T ++ + + L SR + C++ EV+ GN NE+C+E
Sbjct: 181 KIYFGTRTHKQIAQITRELQRTAYSG-VPMTILSSRDHTCVHPEVM--GNFNR-NEKCME 236
Query: 281 L 281
L
Sbjct: 237 L 237
Score = 114 (45.2 bits), Expect = 1.6e-34, Sum P(4) = 1.6e-34
Identities = 26/80 (32%), Positives = 46/80 (57%)
Query: 842 GKEYYENLCMKAVNQSIGRAIRHINDHAAILLVDLRYASESSKRSCSHPANKLPRWIKDR 901
G+++YE +A+NQ++GR IRH ND A++LVD R+ S S+ + L +W++ +
Sbjct: 674 GRQWYEIQAYRALNQALGRCIRHKNDWGALILVDDRFRSNPSRY-----ISGLSKWVR-Q 727
Query: 902 LVSSTNNYGEVHRLLHQFFK 921
L+ + + L +F K
Sbjct: 728 LIQHHSTFESALESLAEFAK 747
Score = 75 (31.5 bits), Expect = 1.6e-34, Sum P(4) = 1.6e-34
Identities = 15/45 (33%), Positives = 25/45 (55%)
Query: 376 ESLGLNLKNNIVIIDEAHNLADSLINMYNAKITLSQLENVHSHLE 420
+++ +NLK +VI+DEAHN+ D + +T QL L+
Sbjct: 241 KNMDINLKEQVVILDEAHNIEDCARESASYSVTEVQLRFARDELD 285
>ZFIN|ZDB-GENE-040426-997 [details] [associations]
symbol:ercc2 "excision repair cross-complementing
rodent repair deficiency, complementation group 2" species:7955
"Danio rerio" [GO:0016817 "hydrolase activity, acting on acid
anhydrides" evidence=IEA] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006289 "nucleotide-excision repair" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0006139 "nucleobase-containing
compound metabolic process" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001945 InterPro:IPR002464 InterPro:IPR006554
InterPro:IPR006555 InterPro:IPR010614 InterPro:IPR010643
InterPro:IPR014013 Pfam:PF06733 Pfam:PF06777 Pfam:PF13307
PRINTS:PR00852 PROSITE:PS00690 PROSITE:PS51193 SMART:SM00488
SMART:SM00491 INTERPRO:IPR013020 ZFIN:ZDB-GENE-040426-997
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0004003
GO:GO:0006289 TIGRFAMs:TIGR00604 GeneTree:ENSGT00550000075092
EMBL:CR855332 EMBL:JN172105 IPI:IPI00495155 UniGene:Dr.5152
Ensembl:ENSDART00000141618 Uniprot:F1Q5E7
Length = 760
Score = 340 (124.7 bits), Expect = 1.8e-34, Sum P(3) = 1.8e-34
Identities = 144/613 (23%), Positives = 259/613 (42%)
Query: 219 VLKVYFCSRTHSQLSQFIKELRK--------TVFANEIKVVCLGSRKNFCINEEVLRLGN 270
V K+ +CSRT ++ + ++ELRK T N+ + L SRKN CI+ EV L
Sbjct: 67 VTKLVYCSRTVPEIEKVVEELRKLMDYYSKQTGVKNDFLALALSSRKNLCIHPEVSSLRF 126
Query: 271 STHINERCLELQXXXXXXXXXXXXLGAEGKVRRTKAFSGCPVLRSHKLQKGFRNEIS-QQ 329
++ +C L + A+ + + PV + ++ ++
Sbjct: 127 GKEVDGKCHSL---------TASYIRAQHQSNPNQ-----PVCQFYEEFDNVGRQVPIPP 172
Query: 330 GALDIEDLVHLGRHMRTCPYYGSRSMVPTADLVVLPYQSLLSKSARESLGLNL-KNNIVI 388
G +++DL GR CPY+ +R + A++VV Y LL + + L K ++V+
Sbjct: 173 GIYNLDDLKDFGRRKGWCPYFLARYALLHANIVVYSYHYLLDPKIADLVSKELAKKSVVV 232
Query: 389 IDEAHNLADSLINMYNAKITLSQLENVHSHLEKYFGRFCSLLGPGNRRYIQTLMVFTRAF 448
DEAHN+ + I+ + IT L+ +++E + + +
Sbjct: 233 FDEAHNIDNVCIDSMSVNITRRTLDRCQTNVETLQNTISRIKETDAAKLREEYRRLVEGL 292
Query: 449 LQV-LLKEKD---ENDVRQDS---ENSTG----AKHAFDSSVAINEFLFS-LNIDNI--- 493
+ + +E D N V D E G A+H E+L + L I ++
Sbjct: 293 KEANVARETDIYLSNPVLPDEILQEAVPGSIRTAEHFVGFMKRFLEYLKARLRIHHVVQE 352
Query: 494 NLVKLLKYIKESNIIHK--VSGYGDKAASLQKGSVLKDGGENYEEGSILSGFQSLVDMLI 551
+ + LK I E I + + ++ SL + + D + + +++S F +LV
Sbjct: 353 SAPQFLKDIFEKVCIDRKPLRFCAERLRSLLRTLEIADIAD-FSPITLISHFATLVS--- 408
Query: 552 SLTNNDGDGRIIISKARPISSXXXXXXXXYLKYVMLTGEKVFSEIVEQAHAVILAGGTLQ 611
T + G III P L + + + + VI+ GTL
Sbjct: 409 --TYSKGF-TIIIE---PFEDKTPTIANPVLHFSCMDPSIAIKPVFGRFQTVIITSGTLS 462
Query: 612 PIEETRERLFPWLSPNKFHFFSCSHIVPPESILPVALSCGPTGKXXXXXXXXXXXXAMIE 671
P++ R+ + P F+ + + + P+ + G A+I
Sbjct: 463 PLD-IYPRILDF-RPVTMASFTMT--LARTCLCPLIVGRGNDQVAMTSKFETREDFAVIR 518
Query: 672 ELGLLLCNLVSVVPEGIIVFFPSFEYVERVYGAWKSLGILDRIMKKKHVFREPRGNTHVE 731
G LL + ++VP+GI+ FF S+ Y+E + +W GIL+ I + K +F E +
Sbjct: 519 NYGNLLLEMSAIVPDGIVAFFTSYMYMENIVASWYEQGILENIQRNKLIFIETQDAAETS 578
Query: 732 SVLKEYQKTIDTLSSRPKEDSTPLNGAMLLAVVGGKISEGINFSDGMGRCIVMVGLPYPS 791
L++YQ+ + + R GA+LL+V GK+SEGI+F GR ++M G+PY
Sbjct: 579 MALEKYQEACE--NGR---------GAILLSVARGKVSEGIDFVHHFGRAVIMFGVPYVY 627
Query: 792 PSNIELLERIKHI 804
+ L R++++
Sbjct: 628 TQSRILKARLEYL 640
Score = 89 (36.4 bits), Expect = 1.8e-34, Sum P(3) = 1.8e-34
Identities = 22/58 (37%), Positives = 31/58 (53%)
Query: 851 MKAVNQSIGRAIRHINDHAAILLVDLRYASESSKRSCSHPANKLPRWIKDRLVSSTNN 908
M+ Q +GRAIR D+ ++ D RYA + KR KLPRWI++ L + N
Sbjct: 657 MRHAAQCVGRAIRGKTDYGLMIFADKRYA-RADKRG------KLPRWIQEHLTDGSLN 707
Score = 70 (29.7 bits), Expect = 1.8e-34, Sum P(3) = 1.8e-34
Identities = 15/36 (41%), Positives = 23/36 (63%)
Query: 20 YSIQTDFMKALYCSLENGGVSMLESPTGTGKTLSII 55
Y Q +M L +L+ G +LE P+GTGKT+S++
Sbjct: 18 YPEQYSYMLELKRTLDAKGHGVLEMPSGTGKTISLL 53
>UNIPROTKB|F1N2P3 [details] [associations]
symbol:ERCC2 "TFIIH basal transcription factor complex
helicase XPD subunit" species:9913 "Bos taurus" [GO:0071817 "MMXD
complex" evidence=IEA] [GO:0060218 "hematopoietic stem cell
differentiation" evidence=IEA] [GO:0048820 "hair follicle
maturation" evidence=IEA] [GO:0047485 "protein N-terminus binding"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0043588 "skin
development" evidence=IEA] [GO:0043388 "positive regulation of DNA
binding" evidence=IEA] [GO:0043249 "erythrocyte maturation"
evidence=IEA] [GO:0043139 "5'-3' DNA helicase activity"
evidence=IEA] [GO:0043066 "negative regulation of apoptotic
process" evidence=IEA] [GO:0040016 "embryonic cleavage"
evidence=IEA] [GO:0035315 "hair cell differentiation" evidence=IEA]
[GO:0035264 "multicellular organism growth" evidence=IEA]
[GO:0033683 "nucleotide-excision repair, DNA incision"
evidence=IEA] [GO:0032289 "central nervous system myelin formation"
evidence=IEA] [GO:0030282 "bone mineralization" evidence=IEA]
[GO:0030198 "extracellular matrix organization" evidence=IEA]
[GO:0021510 "spinal cord development" evidence=IEA] [GO:0019907
"cyclin-dependent protein kinase activating kinase holoenzyme
complex" evidence=IEA] [GO:0009791 "post-embryonic development"
evidence=IEA] [GO:0009650 "UV protection" evidence=IEA] [GO:0008353
"RNA polymerase II carboxy-terminal domain kinase activity"
evidence=IEA] [GO:0008283 "cell proliferation" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0007568
"aging" evidence=IEA] [GO:0007059 "chromosome segregation"
evidence=IEA] [GO:0006979 "response to oxidative stress"
evidence=IEA] [GO:0006917 "induction of apoptosis" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0001701 "in utero
embryonic development" evidence=IEA] [GO:0000075 "cell cycle
checkpoint" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR001945
InterPro:IPR002464 InterPro:IPR006554 InterPro:IPR006555
InterPro:IPR010614 InterPro:IPR010643 InterPro:IPR014013
Pfam:PF06733 Pfam:PF06777 Pfam:PF13307 PRINTS:PR00852
PROSITE:PS00690 PROSITE:PS51193 SMART:SM00488 SMART:SM00491
INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0005737 GO:GO:0006915
GO:GO:0043066 GO:GO:0043588 GO:GO:0007059 GO:GO:0006979
GO:GO:0006917 GO:GO:0003677 GO:GO:0008283 GO:GO:0007568
GO:GO:0001701 GO:GO:0045944 GO:GO:0030198 GO:GO:0040016
GO:GO:0009791 GO:GO:0060218 GO:GO:0004003 GO:GO:0035264
GO:GO:0071817 GO:GO:0021510 GO:GO:0030282 GO:GO:0000075
GO:GO:0043388 GO:GO:0008353 GO:GO:0009650 GO:GO:0019907
GO:GO:0006283 TIGRFAMs:TIGR00604 GO:GO:0035315 GO:GO:0043139
GO:GO:0043249 OMA:KDVDGKC IPI:IPI00866827 GO:GO:0033683
GO:GO:0032289 GO:GO:0048820 GeneTree:ENSGT00550000075092
EMBL:DAAA02047375 Ensembl:ENSBTAT00000002680 Uniprot:F1N2P3
Length = 759
Score = 223 (83.6 bits), Expect = 9.6e-34, Sum P(4) = 9.6e-34
Identities = 70/274 (25%), Positives = 123/274 (44%)
Query: 536 EGSILSGFQ--SLVDMLISLTNNDGDGRIIISKARPISSXXXXXXXXYLKYVMLTGEKVF 593
E S L+ F +L+ +L + G II + P L + +
Sbjct: 386 EISDLTDFSPLTLLANFATLVSTYAKGFTIIIE--PFDDRTPTIANPILHFSCMDASLAI 443
Query: 594 SEIVEQAHAVILAGGTLQPIEETRERLFPWLSPNKFH---FFSCSHIVPPESILPVALSC 650
+ E+ +VI+ GTL P++ ++P + FH + + + + P+ +
Sbjct: 444 KPVFERFQSVIITSGTLSPLD-----IYPKILD--FHPVTMATFTMTLARVCLCPMIIGR 496
Query: 651 GPTGKXXXXXXXXXXXXAMIEELGLLLCNLVSVVPEGIIVFFPSFEYVERVYGAWKSLGI 710
G A+I G LL + +VVP+GI+ FF S++Y+E +W GI
Sbjct: 497 GNDQVAISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFTSYQYMESTVASWYEQGI 556
Query: 711 LDRIMKKKHVFREPRGNTHVESVLKEYQKTIDTLSSRPKEDSTPLNGAMLLAVVGGKISE 770
L+ I + K +F E + L++YQ+ + + R GA+LL+V GK+SE
Sbjct: 557 LENIQRNKLLFIETQDGAETSVALEKYQEACE--NGR---------GAILLSVARGKVSE 605
Query: 771 GINFSDGMGRCIVMVGLPYPSPSNIELLERIKHI 804
GI+F GR ++M G+PY + L R++++
Sbjct: 606 GIDFVHHYGRAVIMFGVPYVYTQSRILKARLEYL 639
Score = 168 (64.2 bits), Expect = 9.6e-34, Sum P(4) = 9.6e-34
Identities = 57/211 (27%), Positives = 95/211 (45%)
Query: 219 VLKVYFCSRTHSQLSQFIKELRKTVFANEI----KVVCLG----SRKNFCINEEVLRLGN 270
V K+ +CSRT ++ + I+ELRK + E K+ LG SRKN CI+ EV L
Sbjct: 66 VTKLIYCSRTVPEIEKVIEELRKLLSFYEKQEGEKLPFLGLALSSRKNLCIHPEVTPLRF 125
Query: 271 STHINERCLELQXXXXXXXXXXXXLGAEGKVRRTKAFSGCPVLRSHKLQKGFRNEISQQG 330
++ +C L + +R + C + G R G
Sbjct: 126 GKDVDGKCHSLTASY-----------VRAQYQRDSSLPHCRFYEEFDVH-G-RQVPLPTG 172
Query: 331 ALDIEDLVHLGRHMRTCPYYGSRSMVPTADLVVLPYQSLLSKSARESLGLNL-KNNIVII 389
+++DL +GR CPY+ +R + A++VV Y LL + + L + +V+
Sbjct: 173 IYNLDDLKAVGRRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARKAVVVF 232
Query: 390 DEAHNLADSLINMYNAKITLSQLENVHSHLE 420
DEAHN+ + I+ + +T L+ ++LE
Sbjct: 233 DEAHNIDNVCIDSMSVNLTRRTLDRCQANLE 263
Score = 84 (34.6 bits), Expect = 9.6e-34, Sum P(4) = 9.6e-34
Identities = 21/58 (36%), Positives = 31/58 (53%)
Query: 851 MKAVNQSIGRAIRHINDHAAILLVDLRYASESSKRSCSHPANKLPRWIKDRLVSSTNN 908
M+ Q +GRAIR D+ ++ D R+A + KR KLPRWI++ L + N
Sbjct: 656 MRHAAQCVGRAIRGKTDYGLMVFADKRFA-RADKRG------KLPRWIQEHLTDANLN 706
Score = 69 (29.3 bits), Expect = 9.6e-34, Sum P(4) = 9.6e-34
Identities = 15/36 (41%), Positives = 23/36 (63%)
Query: 20 YSIQTDFMKALYCSLENGGVSMLESPTGTGKTLSII 55
Y Q +M L +L+ G +LE P+GTGKT+S++
Sbjct: 17 YPEQFSYMLELKRTLDAKGHGVLEMPSGTGKTVSLL 52
>UNIPROTKB|A6QLJ0 [details] [associations]
symbol:ERCC2 "TFIIH basal transcription factor complex
helicase XPD subunit" species:9913 "Bos taurus" [GO:0006468
"protein phosphorylation" evidence=ISS] [GO:0008353 "RNA polymerase
II carboxy-terminal domain kinase activity" evidence=ISS]
[GO:0071817 "MMXD complex" evidence=ISS] [GO:0005819 "spindle"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0007059 "chromosome segregation"
evidence=ISS] [GO:0005675 "holo TFIIH complex" evidence=ISS]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISS]
[GO:0035315 "hair cell differentiation" evidence=ISS] [GO:0004672
"protein kinase activity" evidence=ISS] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0043139 "5'-3' DNA helicase activity"
evidence=ISS] [GO:0033683 "nucleotide-excision repair, DNA
incision" evidence=ISS] [GO:0019907 "cyclin-dependent protein
kinase activating kinase holoenzyme complex" evidence=ISS]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0008022 "protein C-terminus binding"
evidence=ISS] [GO:0006979 "response to oxidative stress"
evidence=ISS] [GO:0000075 "cell cycle checkpoint" evidence=ISS]
[GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=IEA]
InterPro:IPR001945 InterPro:IPR002464 InterPro:IPR006554
InterPro:IPR006555 InterPro:IPR010614 InterPro:IPR010643
InterPro:IPR014013 Pfam:PF06733 Pfam:PF06777 Pfam:PF13307
PRINTS:PR00852 PROSITE:PS00690 PROSITE:PS51193 SMART:SM00488
SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0005737
GO:GO:0007059 GO:GO:0006979 GO:GO:0046872 GO:GO:0003677
GO:GO:0045944 GO:GO:0006468 GO:GO:0051539 GO:GO:0006366
GO:GO:0004003 GO:GO:0071817 GO:GO:0008022 GO:GO:0000075
GO:GO:0005675 eggNOG:COG1199 TIGRFAMs:TIGR00604 GO:GO:0035315
GO:GO:0043139 KO:K10844 EMBL:BC147982 IPI:IPI00866827
RefSeq:NP_001096787.1 UniGene:Bt.4215 STRING:A6QLJ0 PRIDE:A6QLJ0
GeneID:100125238 KEGG:bta:100125238 CTD:2068 HOVERGEN:HBG051498
NextBio:20788783 GO:GO:0033683 Uniprot:A6QLJ0
Length = 760
Score = 223 (83.6 bits), Expect = 9.7e-34, Sum P(4) = 9.7e-34
Identities = 70/274 (25%), Positives = 123/274 (44%)
Query: 536 EGSILSGFQ--SLVDMLISLTNNDGDGRIIISKARPISSXXXXXXXXYLKYVMLTGEKVF 593
E S L+ F +L+ +L + G II + P L + +
Sbjct: 387 EISDLTDFSPLTLLANFATLVSTYAKGFTIIIE--PFDDRTPTIANPILHFSCMDASLAI 444
Query: 594 SEIVEQAHAVILAGGTLQPIEETRERLFPWLSPNKFH---FFSCSHIVPPESILPVALSC 650
+ E+ +VI+ GTL P++ ++P + FH + + + + P+ +
Sbjct: 445 KPVFERFQSVIITSGTLSPLD-----IYPKILD--FHPVTMATFTMTLARVCLCPMIIGR 497
Query: 651 GPTGKXXXXXXXXXXXXAMIEELGLLLCNLVSVVPEGIIVFFPSFEYVERVYGAWKSLGI 710
G A+I G LL + +VVP+GI+ FF S++Y+E +W GI
Sbjct: 498 GNDQVAISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFTSYQYMESTVASWYEQGI 557
Query: 711 LDRIMKKKHVFREPRGNTHVESVLKEYQKTIDTLSSRPKEDSTPLNGAMLLAVVGGKISE 770
L+ I + K +F E + L++YQ+ + + R GA+LL+V GK+SE
Sbjct: 558 LENIQRNKLLFIETQDGAETSVALEKYQEACE--NGR---------GAILLSVARGKVSE 606
Query: 771 GINFSDGMGRCIVMVGLPYPSPSNIELLERIKHI 804
GI+F GR ++M G+PY + L R++++
Sbjct: 607 GIDFVHHYGRAVIMFGVPYVYTQSRILKARLEYL 640
Score = 168 (64.2 bits), Expect = 9.7e-34, Sum P(4) = 9.7e-34
Identities = 57/211 (27%), Positives = 95/211 (45%)
Query: 219 VLKVYFCSRTHSQLSQFIKELRKTVFANEI----KVVCLG----SRKNFCINEEVLRLGN 270
V K+ +CSRT ++ + I+ELRK + E K+ LG SRKN CI+ EV L
Sbjct: 67 VTKLIYCSRTVPEIEKVIEELRKLLSFYEKQEGEKLPFLGLALSSRKNLCIHPEVTPLRF 126
Query: 271 STHINERCLELQXXXXXXXXXXXXLGAEGKVRRTKAFSGCPVLRSHKLQKGFRNEISQQG 330
++ +C L + +R + C + G R G
Sbjct: 127 GKDVDGKCHSLTASY-----------VRAQYQRDSSLPHCRFYEEFDVH-G-RQVPLPTG 173
Query: 331 ALDIEDLVHLGRHMRTCPYYGSRSMVPTADLVVLPYQSLLSKSARESLGLNL-KNNIVII 389
+++DL +GR CPY+ +R + A++VV Y LL + + L + +V+
Sbjct: 174 IYNLDDLKAVGRRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARKAVVVF 233
Query: 390 DEAHNLADSLINMYNAKITLSQLENVHSHLE 420
DEAHN+ + I+ + +T L+ ++LE
Sbjct: 234 DEAHNIDNVCIDSMSVNLTRRTLDRCQANLE 264
Score = 84 (34.6 bits), Expect = 9.7e-34, Sum P(4) = 9.7e-34
Identities = 21/58 (36%), Positives = 31/58 (53%)
Query: 851 MKAVNQSIGRAIRHINDHAAILLVDLRYASESSKRSCSHPANKLPRWIKDRLVSSTNN 908
M+ Q +GRAIR D+ ++ D R+A + KR KLPRWI++ L + N
Sbjct: 657 MRHAAQCVGRAIRGKTDYGLMVFADKRFA-RADKRG------KLPRWIQEHLTDANLN 707
Score = 69 (29.3 bits), Expect = 9.7e-34, Sum P(4) = 9.7e-34
Identities = 15/36 (41%), Positives = 23/36 (63%)
Query: 20 YSIQTDFMKALYCSLENGGVSMLESPTGTGKTLSII 55
Y Q +M L +L+ G +LE P+GTGKT+S++
Sbjct: 18 YPEQFSYMLELKRTLDAKGHGVLEMPSGTGKTVSLL 53
>FB|FBgn0261850 [details] [associations]
symbol:Xpd "Xeroderma pigmentosum D" species:7227 "Drosophila
melanogaster" [GO:0006289 "nucleotide-excision repair"
evidence=ISS;IDA] [GO:0001113 "transcriptional open complex
formation at RNA polymerase II promoter" evidence=ISS] [GO:0005634
"nucleus" evidence=IDA] [GO:0043141 "ATP-dependent 5'-3' DNA
helicase activity" evidence=ISS;IDA] [GO:0006974 "response to DNA
damage stimulus" evidence=IDA] [GO:0005675 "holo TFIIH complex"
evidence=ISS] [GO:0009411 "response to UV" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005703 "polytene
chromosome puff" evidence=IDA] [GO:0000439 "core TFIIH complex"
evidence=ISS;IDA] [GO:0001111 "promoter clearance from RNA
polymerase II promoter" evidence=ISS] [GO:0005705 "polytene
chromosome interband" evidence=IDA] [GO:0006367 "transcription
initiation from RNA polymerase II promoter" evidence=ISS]
[GO:0004386 "helicase activity" evidence=ISS] [GO:0007088
"regulation of mitosis" evidence=IMP] [GO:0010972 "negative
regulation of G2/M transition of mitotic cell cycle" evidence=IDA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IDA] [GO:0051983 "regulation of chromosome
segregation" evidence=IMP] InterPro:IPR001945 InterPro:IPR002464
InterPro:IPR006554 InterPro:IPR006555 InterPro:IPR010614
InterPro:IPR010643 InterPro:IPR014013 Pfam:PF06733 Pfam:PF06777
Pfam:PF13307 PRINTS:PR00852 PROSITE:PS00690 PROSITE:PS51193
SMART:SM00488 SMART:SM00491 INTERPRO:IPR013020 EMBL:AE013599
GO:GO:0005524 GO:GO:0005737 GO:GO:0007088 GO:GO:0009411
GO:GO:0003677 GO:GO:0006367 GO:GO:0006289 GO:GO:0051983
GO:GO:0005675 GO:GO:0005703 GO:GO:0010972 GO:GO:0005705
TIGRFAMs:TIGR00604 KO:K10844 OMA:KDVDGKC GO:GO:0043141
GeneTree:ENSGT00550000075092 GO:GO:0000439 FlyBase:FBgn0261850
RefSeq:NP_726036.2 UniGene:Dm.718 ProteinModelPortal:Q7KVP9
STRING:Q7KVP9 PRIDE:Q7KVP9 EnsemblMetazoa:FBtr0071576 GeneID:37414
KEGG:dme:Dmel_CG9433 UCSC:CG9433-RA CTD:37414 InParanoid:Q7KVP9
OrthoDB:EOG4FTTFK PhylomeDB:Q7KVP9 GenomeRNAi:37414 NextBio:803510
ArrayExpress:Q7KVP9 Bgee:Q7KVP9 Uniprot:Q7KVP9
Length = 769
Score = 337 (123.7 bits), Expect = 1.4e-33, Sum P(3) = 1.4e-33
Identities = 150/612 (24%), Positives = 249/612 (40%)
Query: 219 VLKVYFCSRTHSQLSQFIKELRKTVFANE--------IKVVCLGSRKNFCINEEVLRLGN 270
V K+ +CSRT ++ + I EL+ + E + L SRKN CI+ EV +
Sbjct: 67 VRKLIYCSRTVPEIEKVIAELQNLMVYYERHCPNPPPFTGLVLSSRKNMCIHPEVSKERE 126
Query: 271 STHINERCLELQXXXXXXXXXXXXLGAEGKVRRTKAFSGCPVLRSHKLQKGFRNEISQQG 330
++ +C L + E + C L+ G + + G
Sbjct: 127 GKAVDGKCYGL---TASYIRERHEMDTETPI--------CQYFEGFSLE-GKESTLPV-G 173
Query: 331 ALDIEDLVHLGRHMRTCPYYGSRSMVPTADLVVLPYQSLLSKSARESLGLNL-KNNIVII 389
I+DL GR CPY+ +R + A +VV Y LL + + + + + V+
Sbjct: 174 VYSIDDLKEYGRSRNWCPYFLARYAIAHAHIVVYSYHYLLDPKIAQVVSKEMSRESCVVF 233
Query: 390 DEAHNLADSLINMYNAKI---TLSQLENVHSHLEKYFGRF----CSLLGPGNRRYIQTLM 442
DEAHN+ + I+ + KI T+ + N +HL K + L +R +Q L
Sbjct: 234 DEAHNIDNVCIDSMSVKINRRTVERSTNALNHLTKLVQDIREEDTNRLNEEYQRMVQGLK 293
Query: 443 VFT--RAFLQVLLKEKDENDVRQD--SENSTGAKHAFDSSVAINEFLFS-LNIDNI---N 494
+ R +L NDV + N A H E++ + L + ++ +
Sbjct: 294 DASVQRDTDMILANPVLPNDVLTEVVPGNIRNADHFLSFLRRFIEYIKTRLRVHHVVQES 353
Query: 495 LVKLLKYIKESNIIHK--VSGYGDKAASLQKGSVLKDGGENYEEGSILSGFQSLVDMLIS 552
LK I I + + ++ +SL + + D E Y ++++ F +LV
Sbjct: 354 PAGFLKDISSKICIERKPLRFCAERLSSLLRTLEISDLTE-YGALTLITHFATLVS---- 408
Query: 553 LTNNDGDGRIIISKARPISSXXXXXXXXYLKYVMLTGEKVFSEIVEQAHAVILAGGTLQP 612
T G III P L + L + + + V++ GTL P
Sbjct: 409 -TYTKGF-TIIIE---PFDDKTPTVSNPILHFSCLDSSIAMAPVFSRFQTVVITSGTLSP 463
Query: 613 IEETRERLFPWLSPNKFHFFSCSHIVPPESILPVALSCGPTGKXXXXXXXXXXXXAMIEE 672
++ + L P F+ + P +LP+ +S G A+I
Sbjct: 464 MDMYPKILD--FDPVVMSSFTMTLARP--CLLPMIVSKGNDQVTISSKFETREDTAVIRN 519
Query: 673 LGLLLCNLVSVVPEGIIVFFPSFEYVERVYGAWKSLGILDRIMKKKHVFREPRGNTHVES 732
G LL + VP+GI+ FF S+ Y+E V +W GI+D +++ K +F E + N
Sbjct: 520 YGQLLVEVAKTVPDGIVCFFTSYLYLESVVASWYDQGIVDTLLRYKLLFIETQDNAETSY 579
Query: 733 VLKEYQKTIDTLSSRPKEDSTPLNGAMLLAVVGGKISEGINFSDGMGRCIVMVGLPYPSP 792
L Y K D R GA+LLAV GK+SEG++F GR ++M G+PY
Sbjct: 580 ALMNYVKACDC--GR---------GAVLLAVARGKVSEGVDFDHHYGRAVLMFGIPYVYT 628
Query: 793 SNIELLERIKHI 804
+ L R+ ++
Sbjct: 629 QSRILKARLDYL 640
Score = 84 (34.6 bits), Expect = 1.4e-33, Sum P(3) = 1.4e-33
Identities = 21/58 (36%), Positives = 32/58 (55%)
Query: 851 MKAVNQSIGRAIRHINDHAAILLVDLRYASESSKRSCSHPANKLPRWIKDRLVSSTNN 908
M+ Q +GRA+R D+ ++ D R+ S KRS +LP+WI++ LV S N
Sbjct: 657 MRHAAQCVGRALRGKTDYGIMIFADKRF-SRHDKRS------RLPKWIQEHLVDSFCN 707
Score = 70 (29.7 bits), Expect = 1.4e-33, Sum P(3) = 1.4e-33
Identities = 16/45 (35%), Positives = 27/45 (60%)
Query: 20 YSIQTDFMKALYCSLENGGVSMLESPTGTGKTLSIICSALQWVVD 64
Y Q +M L SL+ G +LE P+GTGKT +++ + ++V+
Sbjct: 18 YPEQYAYMLELKRSLDAKGHCLLEMPSGTGKTATLLSLIVAYMVE 62
>MGI|MGI:95413 [details] [associations]
symbol:Ercc2 "excision repair cross-complementing rodent
repair deficiency, complementation group 2" species:10090 "Mus
musculus" [GO:0000075 "cell cycle checkpoint" evidence=ISO]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0001701 "in
utero embryonic development" evidence=IMP] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005675 "holo TFIIH complex" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005819 "spindle" evidence=ISO]
[GO:0005856 "cytoskeleton" evidence=IEA] [GO:0006139
"nucleobase-containing compound metabolic process" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IMP] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=ISO]
[GO:0006289 "nucleotide-excision repair" evidence=ISO;IMP]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0006468 "protein phosphorylation"
evidence=ISO] [GO:0006915 "apoptotic process" evidence=IMP]
[GO:0006917 "induction of apoptosis" evidence=ISO] [GO:0006974
"response to DNA damage stimulus" evidence=IEA] [GO:0006979
"response to oxidative stress" evidence=ISO;IMP] [GO:0007059
"chromosome segregation" evidence=ISO] [GO:0007568 "aging"
evidence=IMP] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008283 "cell proliferation" evidence=IMP]
[GO:0009411 "response to UV" evidence=IMP] [GO:0009650 "UV
protection" evidence=ISO;IMP] [GO:0009791 "post-embryonic
development" evidence=IMP] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0016817 "hydrolase activity, acting on acid
anhydrides" evidence=IEA] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0021510 "spinal cord development" evidence=IMP]
[GO:0022405 "hair cycle process" evidence=IMP] [GO:0030198
"extracellular matrix organization" evidence=IMP] [GO:0030282 "bone
mineralization" evidence=IMP] [GO:0032289 "central nervous system
myelin formation" evidence=IMP] [GO:0033683 "nucleotide-excision
repair, DNA incision" evidence=ISO] [GO:0035264 "multicellular
organism growth" evidence=IMP] [GO:0035315 "hair cell
differentiation" evidence=ISO;IMP] [GO:0040016 "embryonic cleavage"
evidence=IMP] [GO:0043066 "negative regulation of apoptotic
process" evidence=IMP] [GO:0043139 "5'-3' DNA helicase activity"
evidence=ISO] [GO:0043249 "erythrocyte maturation" evidence=IMP]
[GO:0043388 "positive regulation of DNA binding" evidence=IMP]
[GO:0043588 "skin development" evidence=IMP] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0047485 "protein N-terminus binding"
evidence=ISO] [GO:0048820 "hair follicle maturation" evidence=IMP]
[GO:0051536 "iron-sulfur cluster binding" evidence=IEA] [GO:0051539
"4 iron, 4 sulfur cluster binding" evidence=IEA] [GO:0060218
"hematopoietic stem cell differentiation" evidence=IMP] [GO:0071817
"MMXD complex" evidence=ISO] InterPro:IPR001945 InterPro:IPR002464
InterPro:IPR006554 InterPro:IPR006555 InterPro:IPR010614
InterPro:IPR010643 InterPro:IPR014013 Pfam:PF06733 Pfam:PF06777
Pfam:PF13307 PRINTS:PR00852 PROSITE:PS00690 PROSITE:PS51193
SMART:SM00488 SMART:SM00491 MGI:MGI:95413 INTERPRO:IPR013020
GO:GO:0005524 GO:GO:0005737 GO:GO:0006915 GO:GO:0043066
GO:GO:0043588 GO:GO:0007059 GO:GO:0006979 GO:GO:0006917
GO:GO:0046872 GO:GO:0003677 GO:GO:0008283 GO:GO:0007568
GO:GO:0001701 GO:GO:0001666 GO:GO:0045944 GO:GO:0030198
GO:GO:0040016 GO:GO:0051539 GO:GO:0006366 GO:GO:0009791
GO:GO:0060218 GO:GO:0004003 GO:GO:0035264 GO:GO:0071817
GO:GO:0021510 GO:GO:0030282 GO:GO:0000075 GO:GO:0043388
GO:GO:0008353 GO:GO:0009650 GO:GO:0005675 GO:GO:0019907
GO:GO:0006283 eggNOG:COG1199 TIGRFAMs:TIGR00604 GO:GO:0035315
GO:GO:0043139 GO:GO:0043249 EMBL:CH466639 HOGENOM:HOG000205390
KO:K10844 OMA:KDVDGKC CTD:2068 HOVERGEN:HBG051498 GO:GO:0033683
OrthoDB:EOG4BVRT2 GO:GO:0000441 GO:GO:0032289 GO:GO:0048820
EMBL:U97572 EMBL:AK004652 EMBL:AK082761 IPI:IPI00310721
RefSeq:NP_031975.2 UniGene:Mm.36524 ProteinModelPortal:O08811
SMR:O08811 STRING:O08811 PhosphoSite:O08811 PaxDb:O08811
PRIDE:O08811 Ensembl:ENSMUST00000062831 GeneID:13871 KEGG:mmu:13871
GeneTree:ENSGT00550000075092 InParanoid:Q8C487 NextBio:284788
Bgee:O08811 Genevestigator:O08811 GermOnline:ENSMUSG00000030400
Uniprot:O08811
Length = 760
Score = 222 (83.2 bits), Expect = 2.0e-33, Sum P(4) = 2.0e-33
Identities = 60/226 (26%), Positives = 107/226 (47%)
Query: 582 LKYVMLTGEKVFSEIVEQAHAVILAGGTLQPIEETRERLFPWLSPNKFH---FFSCSHIV 638
L + + + E+ +VI+ GTL P++ ++P + FH + + +
Sbjct: 433 LHFSCMDASLAIKPVFERFQSVIITSGTLSPLD-----IYPKILD--FHPVTMATFTMTL 485
Query: 639 PPESILPVALSCGPTGKXXXXXXXXXXXXAMIEELGLLLCNLVSVVPEGIIVFFPSFEYV 698
+ P+ + G A+I G LL + +VVP+GI+ FF S++Y+
Sbjct: 486 ARVCLCPMIIGRGNDQVAISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFTSYQYM 545
Query: 699 ERVYGAWKSLGILDRIMKKKHVFREPRGNTHVESVLKEYQKTIDTLSSRPKEDSTPLNGA 758
E +W GIL+ I + K +F E + L++YQ+ + + R GA
Sbjct: 546 ESTVASWYEQGILENIQRNKLLFIETQDGAETSVALEKYQEACE--NGR---------GA 594
Query: 759 MLLAVVGGKISEGINFSDGMGRCIVMVGLPYPSPSNIELLERIKHI 804
+LL+V GK+SEGI+F GR ++M G+PY + L R++++
Sbjct: 595 ILLSVARGKVSEGIDFVHHYGRAVIMFGVPYVYTQSRILKARLEYL 640
Score = 163 (62.4 bits), Expect = 2.0e-33, Sum P(4) = 2.0e-33
Identities = 56/211 (26%), Positives = 95/211 (45%)
Query: 219 VLKVYFCSRTHSQLSQFIKELRKTVFANEI----KVVCLG----SRKNFCINEEVLRLGN 270
V K+ +CSRT ++ + I+ELRK + E K+ LG SRKN CI+ EV L
Sbjct: 67 VTKLIYCSRTVPEIEKVIEELRKLLSFYEQQEGEKLPFLGLALSSRKNLCIHPEVTPLRF 126
Query: 271 STHINERCLELQXXXXXXXXXXXXLGAEGKVRRTKAFSGCPVLRSHKLQKGFRNEISQQG 330
++ +C L + ++ + C + G R G
Sbjct: 127 GKDVDGKCHSLTASY-----------VRAQYQQDASLPHCRFYEEFDIH-G-RQMPLPAG 173
Query: 331 ALDIEDLVHLGRHMRTCPYYGSRSMVPTADLVVLPYQSLLSKSARESLGLNL-KNNIVII 389
+++DL LG+ CPY+ +R + A++VV Y LL + + L + +V+
Sbjct: 174 IYNLDDLKALGQRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARKAVVVF 233
Query: 390 DEAHNLADSLINMYNAKITLSQLENVHSHLE 420
DEAHN+ + I+ + +T L+ S+L+
Sbjct: 234 DEAHNIDNVCIDSMSVNLTRRTLDRCQSNLD 264
Score = 87 (35.7 bits), Expect = 2.0e-33, Sum P(4) = 2.0e-33
Identities = 22/58 (37%), Positives = 31/58 (53%)
Query: 851 MKAVNQSIGRAIRHINDHAAILLVDLRYASESSKRSCSHPANKLPRWIKDRLVSSTNN 908
M+ Q +GRAIR D+ ++ D R+A + KR KLPRWI++ L S N
Sbjct: 657 MRHAAQCVGRAIRGKTDYGLMVFADKRFA-RADKRG------KLPRWIQEHLTDSNLN 707
Score = 69 (29.3 bits), Expect = 2.0e-33, Sum P(4) = 2.0e-33
Identities = 15/36 (41%), Positives = 23/36 (63%)
Query: 20 YSIQTDFMKALYCSLENGGVSMLESPTGTGKTLSII 55
Y Q +M L +L+ G +LE P+GTGKT+S++
Sbjct: 18 YPEQFSYMLELKRTLDAKGHGVLEMPSGTGKTVSLL 53
>UNIPROTKB|P18074 [details] [associations]
symbol:ERCC2 "TFIIH basal transcription factor complex
helicase XPD subunit" species:9606 "Homo sapiens" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0019048 "virus-host interaction" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0051539 "4 iron, 4 sulfur
cluster binding" evidence=IEA] [GO:0021510 "spinal cord
development" evidence=IEA] [GO:0030198 "extracellular matrix
organization" evidence=IEA] [GO:0030282 "bone mineralization"
evidence=IEA] [GO:0032289 "central nervous system myelin formation"
evidence=IEA] [GO:0035264 "multicellular organism growth"
evidence=IEA] [GO:0040016 "embryonic cleavage" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0043249 "erythrocyte maturation" evidence=IEA]
[GO:0043388 "positive regulation of DNA binding" evidence=IEA]
[GO:0043588 "skin development" evidence=IEA] [GO:0048820 "hair
follicle maturation" evidence=IEA] [GO:0060218 "hematopoietic stem
cell differentiation" evidence=IEA] [GO:0000441 "SSL2-core TFIIH
complex" evidence=IEA] [GO:0001666 "response to hypoxia"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0006915 "apoptotic process" evidence=IEA]
[GO:0007568 "aging" evidence=IEA] [GO:0008283 "cell proliferation"
evidence=IEA] [GO:0009791 "post-embryonic development"
evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IDA;TAS] [GO:0006289 "nucleotide-excision repair"
evidence=IGI;NAS;TAS] [GO:0047485 "protein N-terminus binding"
evidence=IPI] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006917 "induction of apoptosis" evidence=IMP] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=IDA;TAS]
[GO:0005675 "holo TFIIH complex" evidence=IDA;TAS] [GO:0033683
"nucleotide-excision repair, DNA incision" evidence=IMP]
[GO:0004672 "protein kinase activity" evidence=IDA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IDA] [GO:0043139 "5'-3' DNA helicase activity"
evidence=IDA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IDA;TAS] [GO:0008022 "protein
C-terminus binding" evidence=IPI] [GO:0019907 "cyclin-dependent
protein kinase activating kinase holoenzyme complex" evidence=IDA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IDA] [GO:0035315 "hair cell differentiation" evidence=IMP]
[GO:0000075 "cell cycle checkpoint" evidence=IMP] [GO:0006979
"response to oxidative stress" evidence=IMP] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0007059
"chromosome segregation" evidence=IMP] [GO:0071817 "MMXD complex"
evidence=IDA] [GO:0005819 "spindle" evidence=IDA] [GO:0008353 "RNA
polymerase II carboxy-terminal domain kinase activity"
evidence=IDA] [GO:0009650 "UV protection" evidence=IGI] [GO:0000718
"nucleotide-excision repair, DNA damage removal" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006281 "DNA repair"
evidence=TAS] [GO:0006360 "transcription from RNA polymerase I
promoter" evidence=TAS] [GO:0006361 "transcription initiation from
RNA polymerase I promoter" evidence=TAS] [GO:0006362 "transcription
elongation from RNA polymerase I promoter" evidence=TAS]
[GO:0006363 "termination of RNA polymerase I transcription"
evidence=TAS] [GO:0006367 "transcription initiation from RNA
polymerase II promoter" evidence=TAS] [GO:0006368 "transcription
elongation from RNA polymerase II promoter" evidence=TAS]
[GO:0006370 "7-methylguanosine mRNA capping" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016032 "viral
reproduction" evidence=TAS] [GO:0050434 "positive regulation of
viral transcription" evidence=TAS] [GO:0006468 "protein
phosphorylation" evidence=IDA] Reactome:REACT_216 Reactome:REACT_71
InterPro:IPR001945 InterPro:IPR002464 InterPro:IPR006554
InterPro:IPR006555 InterPro:IPR010614 InterPro:IPR010643
InterPro:IPR014013 Pfam:PF06733 Pfam:PF06777 Pfam:PF13307
PRINTS:PR00852 PROSITE:PS00690 PROSITE:PS51193 SMART:SM00488
SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0005737
Reactome:REACT_116125 GO:GO:0006915 GO:GO:0019048 GO:GO:0043066
GO:GO:0043588 GO:GO:0007059 GO:GO:0016032 GO:GO:0006979
GO:GO:0006917 GO:GO:0046872 GO:GO:0003677 GO:GO:0008283
GO:GO:0007568 GO:GO:0001701 GO:GO:0001666 Reactome:REACT_1675
GO:GO:0045944 GO:GO:0030198 GO:GO:0006468 EMBL:CH471126
GO:GO:0040016 GO:GO:0051539 GO:GO:0009791 GO:GO:0060218
GO:GO:0004003 GO:GO:0035264 GO:GO:0006368 GO:GO:0071817
GO:GO:0021510 GO:GO:0030282 GO:GO:0006367 GO:GO:0000075
Reactome:REACT_1788 GO:GO:0043388 GO:GO:0009650 GO:GO:0005675
GO:GO:0006370 GO:GO:0000718 GO:GO:0050434 GO:GO:0006363
GO:GO:0006362 GO:GO:0006361 GO:GO:0006283 GO:GO:0008094
eggNOG:COG1199 TIGRFAMs:TIGR00604 GO:GO:0035315 GO:GO:0043139
GO:GO:0043249 Orphanet:1466 HOGENOM:HOG000205390 KO:K10844
OMA:KDVDGKC CTD:2068 HOVERGEN:HBG051498 GO:GO:0033683 EMBL:X52221
EMBL:X52222 EMBL:L47234 EMBL:AY092780 EMBL:BT006883 EMBL:BC108255
EMBL:BC110523 IPI:IPI00029728 IPI:IPI00984321 PIR:S10888
RefSeq:NP_000391.1 RefSeq:NP_001124339.1 UniGene:Hs.487294
ProteinModelPortal:P18074 DIP:DIP-644N STRING:P18074
PhosphoSite:P18074 DMDM:119540 PaxDb:P18074 PRIDE:P18074 DNASU:2068
Ensembl:ENST00000391940 Ensembl:ENST00000391942
Ensembl:ENST00000391945 GeneID:2068 KEGG:hsa:2068 UCSC:uc002pbj.2
GeneCards:GC19M045854 HGNC:HGNC:3434 HPA:CAB005375 MIM:126340
MIM:278730 MIM:601675 MIM:610756 neXtProt:NX_P18074 Orphanet:231256
Orphanet:453 Orphanet:670 Orphanet:276258 Orphanet:220295
PharmGKB:PA27848 InParanoid:P18074 OrthoDB:EOG4BVRT2
PhylomeDB:P18074 ChiTaRS:ERCC2 GenomeRNAi:2068 NextBio:8409
ArrayExpress:P18074 Bgee:P18074 CleanEx:HS_ERCC2
Genevestigator:P18074 GermOnline:ENSG00000104884 GO:GO:0000441
GO:GO:0032289 GO:GO:0048820 Uniprot:P18074
Length = 760
Score = 222 (83.2 bits), Expect = 2.0e-33, Sum P(4) = 2.0e-33
Identities = 60/226 (26%), Positives = 107/226 (47%)
Query: 582 LKYVMLTGEKVFSEIVEQAHAVILAGGTLQPIEETRERLFPWLSPNKFH---FFSCSHIV 638
L + + + E+ +VI+ GTL P++ ++P + FH + + +
Sbjct: 433 LHFSCMDASLAIKPVFERFQSVIITSGTLSPLD-----IYPKILD--FHPVTMATFTMTL 485
Query: 639 PPESILPVALSCGPTGKXXXXXXXXXXXXAMIEELGLLLCNLVSVVPEGIIVFFPSFEYV 698
+ P+ + G A+I G LL + +VVP+GI+ FF S++Y+
Sbjct: 486 ARVCLCPMIIGRGNDQVAISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFTSYQYM 545
Query: 699 ERVYGAWKSLGILDRIMKKKHVFREPRGNTHVESVLKEYQKTIDTLSSRPKEDSTPLNGA 758
E +W GIL+ I + K +F E + L++YQ+ + + R GA
Sbjct: 546 ESTVASWYEQGILENIQRNKLLFIETQDGAETSVALEKYQEACE--NGR---------GA 594
Query: 759 MLLAVVGGKISEGINFSDGMGRCIVMVGLPYPSPSNIELLERIKHI 804
+LL+V GK+SEGI+F GR ++M G+PY + L R++++
Sbjct: 595 ILLSVARGKVSEGIDFVHHYGRAVIMFGVPYVYTQSRILKARLEYL 640
Score = 163 (62.4 bits), Expect = 2.0e-33, Sum P(4) = 2.0e-33
Identities = 57/212 (26%), Positives = 95/212 (44%)
Query: 219 VLKVYFCSRTHSQLSQFIKELRKTVFANEI----KVVCLG----SRKNFCINEEVLRLGN 270
V K+ +CSRT ++ + I+ELRK + E K+ LG SRKN CI+ EV L
Sbjct: 67 VTKLIYCSRTVPEIEKVIEELRKLLNFYEKQEGEKLPFLGLALSSRKNLCIHPEVTPLRF 126
Query: 271 STHINERCLELQXXXXXXXXXXXXLGAEGKVRRTKAFSGCPVLRSHKLQKGFRNEIS-QQ 329
++ +C L + + + C R ++ E+
Sbjct: 127 GKDVDGKCHSLTASY-----------VRAQYQHDTSLPHC---RFYEEFDAHGREVPLPA 172
Query: 330 GALDIEDLVHLGRHMRTCPYYGSRSMVPTADLVVLPYQSLLSKSARESLGLNL-KNNIVI 388
G +++DL LGR CPY+ +R + A++VV Y LL + + L + +V+
Sbjct: 173 GIYNLDDLKALGRRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARKAVVV 232
Query: 389 IDEAHNLADSLINMYNAKITLSQLENVHSHLE 420
DEAHN+ + I+ + +T L+ +LE
Sbjct: 233 FDEAHNIDNVCIDSMSVNLTRRTLDRCQGNLE 264
Score = 83 (34.3 bits), Expect = 2.0e-33, Sum P(4) = 2.0e-33
Identities = 21/58 (36%), Positives = 30/58 (51%)
Query: 851 MKAVNQSIGRAIRHINDHAAILLVDLRYASESSKRSCSHPANKLPRWIKDRLVSSTNN 908
M+ Q +GRAIR D+ ++ D R+A KR KLPRWI++ L + N
Sbjct: 657 MRHAAQCVGRAIRGKTDYGLMVFADKRFA-RGDKRG------KLPRWIQEHLTDANLN 707
Score = 73 (30.8 bits), Expect = 2.0e-33, Sum P(4) = 2.0e-33
Identities = 15/36 (41%), Positives = 24/36 (66%)
Query: 20 YSIQTDFMKALYCSLENGGVSMLESPTGTGKTLSII 55
Y Q +M+ L +L+ G +LE P+GTGKT+S++
Sbjct: 18 YPEQFSYMRELKRTLDAKGHGVLEMPSGTGKTVSLL 53
>UNIPROTKB|Q60452 [details] [associations]
symbol:ERCC2 "TFIIH basal transcription factor complex
helicase XPD subunit" species:10029 "Cricetulus griseus"
[GO:0000075 "cell cycle checkpoint" evidence=ISS] [GO:0005675 "holo
TFIIH complex" evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0005819 "spindle" evidence=ISS] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=ISS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0006468 "protein phosphorylation" evidence=ISS]
[GO:0006917 "induction of apoptosis" evidence=ISS] [GO:0006979
"response to oxidative stress" evidence=ISS] [GO:0007059
"chromosome segregation" evidence=ISS] [GO:0008022 "protein
C-terminus binding" evidence=ISS] [GO:0033683 "nucleotide-excision
repair, DNA incision" evidence=ISS] [GO:0035315 "hair cell
differentiation" evidence=ISS] [GO:0043139 "5'-3' DNA helicase
activity" evidence=ISS] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0047485 "protein N-terminus binding"
evidence=ISS] [GO:0071817 "MMXD complex" evidence=ISS] [GO:0019907
"cyclin-dependent protein kinase activating kinase holoenzyme
complex" evidence=ISS] [GO:0004672 "protein kinase activity"
evidence=ISS] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISS] [GO:0008353 "RNA polymerase II carboxy-terminal
domain kinase activity" evidence=ISS] InterPro:IPR001945
InterPro:IPR002464 InterPro:IPR006554 InterPro:IPR006555
InterPro:IPR010614 InterPro:IPR010643 InterPro:IPR014013
Pfam:PF06733 Pfam:PF06777 Pfam:PF13307 PRINTS:PR00852
PROSITE:PS00690 PROSITE:PS51193 SMART:SM00488 SMART:SM00491
INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0005737 GO:GO:0007059
GO:GO:0006979 GO:GO:0006917 GO:GO:0046872 GO:GO:0003677
GO:GO:0045944 GO:GO:0006468 GO:GO:0051539 GO:GO:0006366
GO:GO:0004003 GO:GO:0071817 GO:GO:0008022 GO:GO:0047485
GO:GO:0000075 GO:GO:0005675 GO:GO:0006283 TIGRFAMs:TIGR00604
GO:GO:0035315 GO:GO:0043139 CTD:2068 HOVERGEN:HBG051498
GO:GO:0033683 EMBL:U04968 EMBL:U04967 PIR:A55732
RefSeq:NP_001231320.1 GeneID:100689272 Uniprot:Q60452
Length = 760
Score = 222 (83.2 bits), Expect = 4.1e-33, Sum P(4) = 4.1e-33
Identities = 60/226 (26%), Positives = 107/226 (47%)
Query: 582 LKYVMLTGEKVFSEIVEQAHAVILAGGTLQPIEETRERLFPWLSPNKFH---FFSCSHIV 638
L + + + E+ +VI+ GTL P++ ++P + FH + + +
Sbjct: 433 LHFSCMDASLAIKPVFERFQSVIITSGTLSPLD-----IYPKILD--FHPVTMATFTMTL 485
Query: 639 PPESILPVALSCGPTGKXXXXXXXXXXXXAMIEELGLLLCNLVSVVPEGIIVFFPSFEYV 698
+ P+ + G A+I G LL + +VVP+GI+ FF S++Y+
Sbjct: 486 ARVCLCPMIIGRGNDQVAISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFTSYQYM 545
Query: 699 ERVYGAWKSLGILDRIMKKKHVFREPRGNTHVESVLKEYQKTIDTLSSRPKEDSTPLNGA 758
E +W GIL+ I + K +F E + L++YQ+ + + R GA
Sbjct: 546 ESTVASWYEQGILENIQRNKLLFIETQDGAETSVALEKYQEACE--NGR---------GA 594
Query: 759 MLLAVVGGKISEGINFSDGMGRCIVMVGLPYPSPSNIELLERIKHI 804
+LL+V GK+SEGI+F GR ++M G+PY + L R++++
Sbjct: 595 ILLSVARGKVSEGIDFVHHYGRAVIMFGVPYVYTQSRILKARLEYL 640
Score = 160 (61.4 bits), Expect = 4.1e-33, Sum P(4) = 4.1e-33
Identities = 56/211 (26%), Positives = 94/211 (44%)
Query: 219 VLKVYFCSRTHSQLSQFIKELRKTVFANEI----KVVCLG----SRKNFCINEEVLRLGN 270
V K+ +CSRT ++ + I+ELRK + E K+ LG SRKN CI+ EV L
Sbjct: 67 VTKLIYCSRTVPEIEKVIEELRKLLSFYEQQEGEKLPFLGLALSSRKNLCIHPEVTPLRF 126
Query: 271 STHINERCLELQXXXXXXXXXXXXLGAEGKVRRTKAFSGCPVLRSHKLQKGFRNEISQQG 330
++ +C L + ++ + C G R G
Sbjct: 127 GKDVDGKCHSLTASY-----------VRAQYQQDASLPHCRFYEEFDAH-G-RQVPLPAG 173
Query: 331 ALDIEDLVHLGRHMRTCPYYGSRSMVPTADLVVLPYQSLLSKSARESLGLNL-KNNIVII 389
+++DL LG+ CPY+ +R + A++VV Y LL + + L + +V+
Sbjct: 174 IYNLDDLKALGQRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARKAVVVF 233
Query: 390 DEAHNLADSLINMYNAKITLSQLENVHSHLE 420
DEAHN+ + I+ + +T L+ S+L+
Sbjct: 234 DEAHNIDNVCIDSMSVNLTRRTLDRCQSNLD 264
Score = 87 (35.7 bits), Expect = 4.1e-33, Sum P(4) = 4.1e-33
Identities = 22/58 (37%), Positives = 31/58 (53%)
Query: 851 MKAVNQSIGRAIRHINDHAAILLVDLRYASESSKRSCSHPANKLPRWIKDRLVSSTNN 908
M+ Q +GRAIR D+ ++ D R+A + KR KLPRWI++ L S N
Sbjct: 657 MRHAAQCVGRAIRGKTDYGLMVFADKRFA-RADKRG------KLPRWIQEHLTDSNLN 707
Score = 69 (29.3 bits), Expect = 4.1e-33, Sum P(4) = 4.1e-33
Identities = 15/36 (41%), Positives = 23/36 (63%)
Query: 20 YSIQTDFMKALYCSLENGGVSMLESPTGTGKTLSII 55
Y Q +M L +L+ G +LE P+GTGKT+S++
Sbjct: 18 YPEQFSYMLELKRTLDAKGHGVLEMPSGTGKTVSLL 53
>RGD|1309109 [details] [associations]
symbol:Ercc2 "excision repair cross-complementing rodent repair
deficiency, complementation group 2" species:10116 "Rattus
norvegicus" [GO:0000075 "cell cycle checkpoint" evidence=IEA;ISO]
[GO:0000441 "SSL2-core TFIIH complex" evidence=IDA] [GO:0001666
"response to hypoxia" evidence=IEP] [GO:0001701 "in utero embryonic
development" evidence=IEA;ISO] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005675 "holo TFIIH complex" evidence=ISO] [GO:0005737
"cytoplasm" evidence=IEA;ISO] [GO:0005819 "spindle" evidence=ISO]
[GO:0006281 "DNA repair" evidence=ISO] [GO:0006283
"transcription-coupled nucleotide-excision repair"
evidence=IEA;ISO] [GO:0006289 "nucleotide-excision repair"
evidence=ISO] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0006468 "protein phosphorylation"
evidence=ISO] [GO:0006915 "apoptotic process" evidence=IEA;ISO]
[GO:0006917 "induction of apoptosis" evidence=IEA;ISO] [GO:0006979
"response to oxidative stress" evidence=IEA;ISO] [GO:0007059
"chromosome segregation" evidence=IEA;ISO] [GO:0007568 "aging"
evidence=IEA;ISO] [GO:0008022 "protein C-terminus binding"
evidence=IEA;ISO] [GO:0008283 "cell proliferation"
evidence=IEA;ISO] [GO:0008353 "RNA polymerase II carboxy-terminal
domain kinase activity" evidence=IEA;ISO] [GO:0009411 "response to
UV" evidence=ISO] [GO:0009650 "UV protection" evidence=IEA;ISO]
[GO:0009791 "post-embryonic development" evidence=IEA;ISO]
[GO:0019907 "cyclin-dependent protein kinase activating kinase
holoenzyme complex" evidence=IEA;ISO] [GO:0021510 "spinal cord
development" evidence=IEA;ISO] [GO:0022405 "hair cycle process"
evidence=ISO] [GO:0030198 "extracellular matrix organization"
evidence=IEA;ISO] [GO:0030282 "bone mineralization"
evidence=IEA;ISO] [GO:0032289 "central nervous system myelin
formation" evidence=IEA;ISO] [GO:0033683 "nucleotide-excision
repair, DNA incision" evidence=IEA;ISO] [GO:0035264 "multicellular
organism growth" evidence=IEA;ISO] [GO:0035315 "hair cell
differentiation" evidence=IEA;ISO] [GO:0040016 "embryonic cleavage"
evidence=IEA;ISO] [GO:0043066 "negative regulation of apoptotic
process" evidence=IEA;ISO] [GO:0043139 "5'-3' DNA helicase
activity" evidence=IEA;ISO] [GO:0043249 "erythrocyte maturation"
evidence=IEA;ISO] [GO:0043388 "positive regulation of DNA binding"
evidence=IEA;ISO] [GO:0043588 "skin development" evidence=IEA;ISO]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=ISO] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA;ISO] [GO:0047485
"protein N-terminus binding" evidence=IEA;ISO] [GO:0048820 "hair
follicle maturation" evidence=IEA;ISO] [GO:0060218 "hematopoietic
stem cell differentiation" evidence=IEA;ISO] [GO:0071817 "MMXD
complex" evidence=IEA;ISO] [GO:0004672 "protein kinase activity"
evidence=ISO] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISO] InterPro:IPR001945 InterPro:IPR002464
InterPro:IPR006554 InterPro:IPR006555 InterPro:IPR010614
InterPro:IPR010643 InterPro:IPR014013 Pfam:PF06733 Pfam:PF06777
Pfam:PF13307 PRINTS:PR00852 PROSITE:PS00690 PROSITE:PS51193
SMART:SM00488 SMART:SM00491 RGD:1309109 INTERPRO:IPR013020
GO:GO:0005524 GO:GO:0005737 GO:GO:0006915 GO:GO:0043066
GO:GO:0043588 GO:GO:0007059 GO:GO:0006979 GO:GO:0006917
GO:GO:0003677 GO:GO:0008283 GO:GO:0007568 GO:GO:0001701
GO:GO:0001666 GO:GO:0045944 GO:GO:0030198 GO:GO:0040016
GO:GO:0009791 GO:GO:0060218 GO:GO:0004003 GO:GO:0035264
GO:GO:0071817 GO:GO:0021510 GO:GO:0030282 GO:GO:0000075
EMBL:CH473979 GO:GO:0043388 GO:GO:0008353 GO:GO:0009650
GO:GO:0019907 GO:GO:0006283 TIGRFAMs:TIGR00604 GO:GO:0035315
GO:GO:0043139 GO:GO:0043249 KO:K10844 CTD:2068 GO:GO:0033683
OrthoDB:EOG4BVRT2 GO:GO:0000441 GO:GO:0032289 GO:GO:0048820
GeneTree:ENSGT00550000075092 IPI:IPI00367025 RefSeq:NP_001166280.1
UniGene:Rn.41871 Ensembl:ENSRNOT00000024246 GeneID:308415
KEGG:rno:308415 NextBio:658821 Uniprot:D3ZEG9
Length = 760
Score = 222 (83.2 bits), Expect = 4.1e-33, Sum P(4) = 4.1e-33
Identities = 60/226 (26%), Positives = 107/226 (47%)
Query: 582 LKYVMLTGEKVFSEIVEQAHAVILAGGTLQPIEETRERLFPWLSPNKFH---FFSCSHIV 638
L + + + E+ +VI+ GTL P++ ++P + FH + + +
Sbjct: 433 LHFSCMDASLAIKPVFERFQSVIITSGTLSPLD-----IYPKILD--FHPVTMATFTMTL 485
Query: 639 PPESILPVALSCGPTGKXXXXXXXXXXXXAMIEELGLLLCNLVSVVPEGIIVFFPSFEYV 698
+ P+ + G A+I G LL + +VVP+GI+ FF S++Y+
Sbjct: 486 ARVCLCPMIIGRGNDQVAISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFTSYQYM 545
Query: 699 ERVYGAWKSLGILDRIMKKKHVFREPRGNTHVESVLKEYQKTIDTLSSRPKEDSTPLNGA 758
E +W GIL+ I + K +F E + L++YQ+ + + R GA
Sbjct: 546 ESTVASWYEQGILENIQRNKLLFIETQDGAETSVALEKYQEACE--NGR---------GA 594
Query: 759 MLLAVVGGKISEGINFSDGMGRCIVMVGLPYPSPSNIELLERIKHI 804
+LL+V GK+SEGI+F GR ++M G+PY + L R++++
Sbjct: 595 ILLSVARGKVSEGIDFVHHYGRAVIMFGVPYVYTQSRILKARLEYL 640
Score = 160 (61.4 bits), Expect = 4.1e-33, Sum P(4) = 4.1e-33
Identities = 56/211 (26%), Positives = 94/211 (44%)
Query: 219 VLKVYFCSRTHSQLSQFIKELRKTVFANEI----KVVCLG----SRKNFCINEEVLRLGN 270
V K+ +CSRT ++ + I+ELRK + E K+ LG SRKN CI+ EV L
Sbjct: 67 VTKLIYCSRTVPEIEKVIEELRKLLSFYEQQEGEKLPFLGLALSSRKNLCIHPEVTPLRF 126
Query: 271 STHINERCLELQXXXXXXXXXXXXLGAEGKVRRTKAFSGCPVLRSHKLQKGFRNEISQQG 330
++ +C L + ++ + C G R G
Sbjct: 127 GKDVDGKCHSLTASY-----------VRAQYQQDASLPHCRFYEEFDTH-G-RQVPLPAG 173
Query: 331 ALDIEDLVHLGRHMRTCPYYGSRSMVPTADLVVLPYQSLLSKSARESLGLNL-KNNIVII 389
+++DL LG+ CPY+ +R + A++VV Y LL + + L + +V+
Sbjct: 174 IYNLDDLKALGQRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARKAVVVF 233
Query: 390 DEAHNLADSLINMYNAKITLSQLENVHSHLE 420
DEAHN+ + I+ + +T L+ S+L+
Sbjct: 234 DEAHNIDNVCIDSMSVNLTRRTLDRCQSNLD 264
Score = 87 (35.7 bits), Expect = 4.1e-33, Sum P(4) = 4.1e-33
Identities = 22/58 (37%), Positives = 31/58 (53%)
Query: 851 MKAVNQSIGRAIRHINDHAAILLVDLRYASESSKRSCSHPANKLPRWIKDRLVSSTNN 908
M+ Q +GRAIR D+ ++ D R+A + KR KLPRWI++ L S N
Sbjct: 657 MRHAAQCVGRAIRGKTDYGLMVFADKRFA-RADKRG------KLPRWIQEHLTDSNLN 707
Score = 69 (29.3 bits), Expect = 4.1e-33, Sum P(4) = 4.1e-33
Identities = 15/36 (41%), Positives = 23/36 (63%)
Query: 20 YSIQTDFMKALYCSLENGGVSMLESPTGTGKTLSII 55
Y Q +M L +L+ G +LE P+GTGKT+S++
Sbjct: 18 YPEQFSYMLELKRTLDAKGHGVLEMPSGTGKTVSLL 53
>TAIR|locus:2014525 [details] [associations]
symbol:UVH6 "ULTRAVIOLET HYPERSENSITIVE 6" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0006139 "nucleobase-containing compound metabolic process"
evidence=IEA] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0016817 "hydrolase activity, acting on acid
anhydrides" evidence=IEA] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IMP] [GO:0009408
"response to heat" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0000394 "RNA splicing, via endonucleolytic
cleavage and ligation" evidence=RCA] [GO:0000724 "double-strand
break repair via homologous recombination" evidence=RCA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=RCA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=RCA] [GO:0006457 "protein folding" evidence=RCA]
[GO:0009644 "response to high light intensity" evidence=RCA]
[GO:0010212 "response to ionizing radiation" evidence=RCA]
[GO:0010286 "heat acclimation" evidence=RCA] [GO:0042542 "response
to hydrogen peroxide" evidence=RCA] [GO:0043687 "post-translational
protein modification" evidence=RCA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0009411 "response to UV" evidence=IMP] InterPro:IPR001945
InterPro:IPR002464 InterPro:IPR006554 InterPro:IPR006555
InterPro:IPR010614 InterPro:IPR010643 InterPro:IPR014013
Pfam:PF06733 Pfam:PF06777 Pfam:PF13307 PRINTS:PR00852
PROSITE:PS00690 PROSITE:PS51193 SMART:SM00488 SMART:SM00491
INTERPRO:IPR013020 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005524 GO:GO:0005634 GO:GO:0009411 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0006281 GO:GO:0006351
GO:GO:0051539 GO:GO:0009408 GO:GO:0004003 GO:GO:0006289
eggNOG:COG1199 TIGRFAMs:TIGR00604 EMBL:AY090788 EMBL:AF188623
EMBL:AC005278 EMBL:AY062471 EMBL:AY090915 EMBL:BT010344
IPI:IPI00543586 PIR:C86163 RefSeq:NP_171818.1 RefSeq:NP_849584.1
UniGene:At.10863 ProteinModelPortal:Q8W4M7 SMR:Q8W4M7 IntAct:Q8W4M7
STRING:Q8W4M7 PaxDb:Q8W4M7 PRIDE:Q8W4M7 EnsemblPlants:AT1G03190.1
EnsemblPlants:AT1G03190.2 GeneID:839557 KEGG:ath:AT1G03190
GeneFarm:4445 TAIR:At1g03190 HOGENOM:HOG000205390 InParanoid:Q8W4M7
KO:K10844 OMA:KDVDGKC PhylomeDB:Q8W4M7 ProtClustDB:CLSN2679645
Genevestigator:Q8W4M7 GermOnline:AT1G03190 Uniprot:Q8W4M7
Length = 758
Score = 216 (81.1 bits), Expect = 8.2e-33, Sum P(5) = 8.2e-33
Identities = 58/209 (27%), Positives = 100/209 (47%)
Query: 596 IVEQAHAVILAGGTLQPIEETRERLFPWLSPNKFHFFSCSHIVPPESILPVALSCGPTGK 655
+ ++ +V++ GTL PI+ RL + +P F S + + I P+ L+ G
Sbjct: 447 VFDRFQSVVITSGTLSPID-LYPRLLNF-TPVVSRSFKMS--MTRDCICPMVLTRGSDQL 502
Query: 656 XXXXXXXXXXXXAMIEELGLLLCNLVSVVPEGIIVFFPSFEYVERVYGAWKSLGILDRIM 715
++ G LL +VS+VP+G++ FF S+ Y++ + W GIL IM
Sbjct: 503 PVSTKFDMRSDPGVVRNYGKLLVEMVSIVPDGVVCFFVSYSYMDGIIATWNETGILKEIM 562
Query: 716 KKKHVFREPRGNTHVESVLKEYQKTIDTLSSRPKEDSTPLNGAMLLAVVGGKISEGINFS 775
++K VF E + L Y++ D R GA+ +V GK++EGI+F
Sbjct: 563 QQKLVFIETQDVVETTLALDNYRRACDC--GR---------GAVFFSVARGKVAEGIDFD 611
Query: 776 DGMGRCIVMVGLPYPSPSNIELLERIKHI 804
GR +VM G+P+ + L R++++
Sbjct: 612 RHYGRLVVMYGVPFQYTLSKILRARLEYL 640
Score = 178 (67.7 bits), Expect = 8.2e-33, Sum P(5) = 8.2e-33
Identities = 53/211 (25%), Positives = 93/211 (44%)
Query: 220 LKVYFCSRTHSQLSQFIKELRKTV------FANEIKVVCLG--SRKNFCINEEVLRLGNS 271
+K+ +C+RT ++ + + EL+ + K++ LG SRKN C+N +VL N
Sbjct: 68 IKLVYCTRTVHEMEKTLGELKLLHDYQVRHLGTQAKILALGLSSRKNLCVNTKVLAAENR 127
Query: 272 THINERCLELQXXXXXXXXXXXXLGAEGKVRRTKAFSGCPVLRSHKLQKGFRNEISQQGA 331
++ C + L E C ++ +K N + G
Sbjct: 128 DSVDAACRK------RTASWVRALSTENPNVEL-----CDFFENY--EKAAENALLPPGV 174
Query: 332 LDIEDLVHLGRHMRTCPYYGSRSMVPTADLVVLPYQSLLSKSARESLGLNL-KNNIVIID 390
+EDL G++ CPY+ +R M+ A+++V YQ LL + L K ++V+ D
Sbjct: 175 YTLEDLRAFGKNRGWCPYFLARHMIQFANVIVYSYQYLLDPKVAGFISKELQKESVVVFD 234
Query: 391 EAHNLADSLINMYNAKITLSQLENVHSHLEK 421
EAHN+ + I + + LE + +L K
Sbjct: 235 EAHNIDNVCIEALSVSVRRVTLEGANRNLNK 265
Score = 73 (30.8 bits), Expect = 8.2e-33, Sum P(5) = 8.2e-33
Identities = 15/36 (41%), Positives = 24/36 (66%)
Query: 20 YSIQTDFMKALYCSLENGGVSMLESPTGTGKTLSII 55
Y Q ++M L +L+ G +LE PTGTGKT++++
Sbjct: 18 YPEQYEYMVELKRALDAKGHCLLEMPTGTGKTIALL 53
Score = 68 (29.0 bits), Expect = 8.2e-33, Sum P(5) = 8.2e-33
Identities = 19/52 (36%), Positives = 25/52 (48%)
Query: 851 MKAVNQSIGRAIRHINDHAAILLVDLRYASESSKRSCSHPANKLPRWIKDRL 902
++ Q +GR IR D+ ++ D RY S KRS KLP WI L
Sbjct: 657 LRQAAQCVGRVIRSKADYGMMIFADKRY-SRHDKRS------KLPGWILSHL 701
Score = 40 (19.1 bits), Expect = 8.2e-33, Sum P(5) = 8.2e-33
Identities = 17/75 (22%), Positives = 31/75 (41%)
Query: 432 PGNRRYIQTLMVFTRAFLQVLLKEKDENDVRQDSENSTGAKHAFDSSVAINEFLFSLNID 491
PGN R + + R LQ L D +V ++S S + + +S I + D
Sbjct: 320 PGNIRRAEHFVHVLRRLLQYLGVRLDTENVEKESPVSFVS--SLNSQAGIEQKTLKFCYD 377
Query: 492 NINLVKLLKYIKESN 506
+ + L I +++
Sbjct: 378 RLQSLMLTLEITDTD 392
>UNIPROTKB|A8MX75 [details] [associations]
symbol:ERCC2 "TFIIH basal transcription factor complex
helicase XPD subunit" species:9606 "Homo sapiens" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR001945 InterPro:IPR002464
InterPro:IPR006554 InterPro:IPR006555 InterPro:IPR010614
InterPro:IPR010643 InterPro:IPR014013 Pfam:PF06733 Pfam:PF06777
Pfam:PF13307 PRINTS:PR00852 PROSITE:PS00690 PROSITE:PS51193
SMART:SM00488 SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004003 GO:GO:0006289
TIGRFAMs:TIGR00604 HOGENOM:HOG000205390 HOVERGEN:HBG051498
EMBL:L47234 HGNC:HGNC:3434 ChiTaRS:ERCC2 IPI:IPI00442420
ProteinModelPortal:A8MX75 STRING:A8MX75 PRIDE:A8MX75
Ensembl:ENST00000391941 ArrayExpress:A8MX75 Bgee:A8MX75
Uniprot:A8MX75
Length = 706
Score = 222 (83.2 bits), Expect = 1.1e-32, Sum P(4) = 1.1e-32
Identities = 60/226 (26%), Positives = 107/226 (47%)
Query: 582 LKYVMLTGEKVFSEIVEQAHAVILAGGTLQPIEETRERLFPWLSPNKFH---FFSCSHIV 638
L + + + E+ +VI+ GTL P++ ++P + FH + + +
Sbjct: 409 LHFSCMDASLAIKPVFERFQSVIITSGTLSPLD-----IYPKILD--FHPVTMATFTMTL 461
Query: 639 PPESILPVALSCGPTGKXXXXXXXXXXXXAMIEELGLLLCNLVSVVPEGIIVFFPSFEYV 698
+ P+ + G A+I G LL + +VVP+GI+ FF S++Y+
Sbjct: 462 ARVCLCPMIIGRGNDQVAISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFTSYQYM 521
Query: 699 ERVYGAWKSLGILDRIMKKKHVFREPRGNTHVESVLKEYQKTIDTLSSRPKEDSTPLNGA 758
E +W GIL+ I + K +F E + L++YQ+ + + R GA
Sbjct: 522 ESTVASWYEQGILENIQRNKLLFIETQDGAETSVALEKYQEACE--NGR---------GA 570
Query: 759 MLLAVVGGKISEGINFSDGMGRCIVMVGLPYPSPSNIELLERIKHI 804
+LL+V GK+SEGI+F GR ++M G+PY + L R++++
Sbjct: 571 ILLSVARGKVSEGIDFVHHYGRAVIMFGVPYVYTQSRILKARLEYL 616
Score = 163 (62.4 bits), Expect = 1.1e-32, Sum P(4) = 1.1e-32
Identities = 57/212 (26%), Positives = 95/212 (44%)
Query: 219 VLKVYFCSRTHSQLSQFIKELRKTVFANEI----KVVCLG----SRKNFCINEEVLRLGN 270
V K+ +CSRT ++ + I+ELRK + E K+ LG SRKN CI+ EV L
Sbjct: 43 VTKLIYCSRTVPEIEKVIEELRKLLNFYEKQEGEKLPFLGLALSSRKNLCIHPEVTPLRF 102
Query: 271 STHINERCLELQXXXXXXXXXXXXLGAEGKVRRTKAFSGCPVLRSHKLQKGFRNEIS-QQ 329
++ +C L + + + C R ++ E+
Sbjct: 103 GKDVDGKCHSLTASY-----------VRAQYQHDTSLPHC---RFYEEFDAHGREVPLPA 148
Query: 330 GALDIEDLVHLGRHMRTCPYYGSRSMVPTADLVVLPYQSLLSKSARESLGLNL-KNNIVI 388
G +++DL LGR CPY+ +R + A++VV Y LL + + L + +V+
Sbjct: 149 GIYNLDDLKALGRRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARKAVVV 208
Query: 389 IDEAHNLADSLINMYNAKITLSQLENVHSHLE 420
DEAHN+ + I+ + +T L+ +LE
Sbjct: 209 FDEAHNIDNVCIDSMSVNLTRRTLDRCQGNLE 240
Score = 83 (34.3 bits), Expect = 1.1e-32, Sum P(4) = 1.1e-32
Identities = 21/58 (36%), Positives = 30/58 (51%)
Query: 851 MKAVNQSIGRAIRHINDHAAILLVDLRYASESSKRSCSHPANKLPRWIKDRLVSSTNN 908
M+ Q +GRAIR D+ ++ D R+A KR KLPRWI++ L + N
Sbjct: 633 MRHAAQCVGRAIRGKTDYGLMVFADKRFA-RGDKRG------KLPRWIQEHLTDANLN 683
Score = 64 (27.6 bits), Expect = 1.1e-32, Sum P(4) = 1.1e-32
Identities = 13/29 (44%), Positives = 21/29 (72%)
Query: 27 MKALYCSLENGGVSMLESPTGTGKTLSII 55
M+ L +L+ G +LE P+GTGKT+S++
Sbjct: 1 MRELKRTLDAKGHGVLEMPSGTGKTVSLL 29
>CGD|CAL0002854 [details] [associations]
symbol:RAD3 species:5476 "Candida albicans" [GO:0003678 "DNA
helicase activity" evidence=IDA] [GO:0005675 "holo TFIIH complex"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0000439 "core
TFIIH complex" evidence=IEA] [GO:0000112 "nucleotide-excision
repair factor 3 complex" evidence=IEA] [GO:0003684 "damaged DNA
binding" evidence=IEA] [GO:0043141 "ATP-dependent 5'-3' DNA
helicase activity" evidence=IEA] [GO:0004003 "ATP-dependent DNA
helicase activity" evidence=IEA] [GO:0010525 "regulation of
transposition, RNA-mediated" evidence=IEA] [GO:0000019 "regulation
of mitotic recombination" evidence=IEA] [GO:0070816
"phosphorylation of RNA polymerase II C-terminal domain"
evidence=IEA] [GO:0000717 "nucleotide-excision repair, DNA duplex
unwinding" evidence=IEA] [GO:0033683 "nucleotide-excision repair,
DNA incision" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] InterPro:IPR001945
InterPro:IPR002464 InterPro:IPR006554 InterPro:IPR006555
InterPro:IPR010614 InterPro:IPR010643 InterPro:IPR014013
Pfam:PF06733 Pfam:PF06777 Pfam:PF13307 PRINTS:PR00852
PROSITE:PS00690 PROSITE:PS51193 SMART:SM00488 SMART:SM00491
CGD:CAL0002854 INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004003 EMBL:AACQ01000024 GO:GO:0003678
GO:GO:0006289 eggNOG:COG1199 TIGRFAMs:TIGR00604 KO:K10844
RefSeq:XP_720409.1 RefSeq:XP_888639.1 ProteinModelPortal:Q5AFE9
STRING:Q5AFE9 GeneID:3638014 GeneID:3704106 KEGG:cal:CaO19.7119
KEGG:cal:CaO19_7119 Uniprot:Q5AFE9
Length = 765
Score = 317 (116.6 bits), Expect = 5.6e-30, Sum P(3) = 5.6e-30
Identities = 139/602 (23%), Positives = 249/602 (41%)
Query: 221 KVYFCSRTHSQLSQFIKELRKTV-F-ANEIKVV----CLG--SRKNFCINEEVLRLGNST 272
K+ +CSRT S++ + + EL K + F ANE+ V LG SRKN C++ + +
Sbjct: 68 KIVYCSRTMSEIEKALIELHKLMEFRANELGEVEDFRGLGLTSRKNLCLHPTISKERKGV 127
Query: 273 HINERCLELQXXXXXXXXXXXXLGAEGKVRRTKAFSGCPVLRS----H-KLQKGFRNEIS 327
++E+C + G+++ K G P S H KL + +
Sbjct: 128 VVDEKCRRI---------------TNGQLKE-KIEKGVPTEDSLCSFHEKLYDLEPHNLV 171
Query: 328 QQGALDIEDLVHLGRHMRTCPYYGSRSMVPTADLVVLPYQSLLSKSARESLGLNL-KNNI 386
G + L+ + TCPY+ R M+P ++++ Y LL E + L K++I
Sbjct: 172 PPGVYSFDALIKYCKEEGTCPYFTVRRMIPFCNIIIYSYHYLLDPKIAERVSRELSKDSI 231
Query: 387 VIIDEAHNLADSLINMYNAKITLSQLENVHSHLEKYFGRFCSLLGPGNRRYIQTLMVFTR 446
VI DEAHN+ + I + +T L+ K + + +
Sbjct: 232 VIFDEAHNIDNVCIESLSLDLTDETLKKASRGANKLGEAIEDMKAQDSEKLQNEYEQLVE 291
Query: 447 AFLQVLLKEKDE----NDVR-QD--SENSTG----AKHAFDSSVAINEFLFS----LNID 491
Q + E N V QD E G +H E+L + L++
Sbjct: 292 GLRQAEIARDQELFMANPVLPQDLLDEAIPGNIRKGEHFIAFLKRFIEYLKTRMKVLHVI 351
Query: 492 NINLVKLLKYIKESNIIH-KVSGYGDKAASLQKGSVLKDGGENYEEGSILSGFQSLVDML 550
+ L+++KE I K + + SL ++ +++ ++ F +LV
Sbjct: 352 SETPTSFLQHLKELTYIERKPLRFCSERLSLLVRTLEVTEIDDFNALKDIATFATLV--- 408
Query: 551 ISLTNNDGDGRIIISKARPISSXXXXXXXXYLKYVMLTGEKVFSEIVEQAHAVILAGGTL 610
+ D ++I+ P + L + L + ++ +VI+ GT+
Sbjct: 409 ---STYDSGFQLILE---PYETEGSTVPNPILHFTCLDASIAIKPVFDRFSSVIITSGTI 462
Query: 611 QPIEETRERLFPWLSPNKFHFF---SCSHIVPPESILPVALSCGPTGKXXXXXXXXXXXX 667
P++ ++P + KF S + + S LP+ ++ G
Sbjct: 463 SPLD-----MYPKML--KFETVIQESYAMTLARRSFLPMIVTKGSDQVSISSRFEIRNDP 515
Query: 668 AMIEELGLLLCNLVSVVPEGIIVFFPSFEYVERVYGAWKSLGILDRIMKKKHVFREPRGN 727
+++ G LL + P+G++VFFPS+ Y+E + W+S+G+LD + K K + E
Sbjct: 516 SVVRNYGSLLIEFAKITPDGMVVFFPSYLYMESIISMWQSMGVLDEVWKHKLILVETPDA 575
Query: 728 THVESVLKEYQKTIDTLSSRPKEDSTPLNGAMLLAVVGGKISEGINFSDGMGRCIVMVGL 787
L+ Y+K + R GA+LL+V GK+SEGI+F GR ++M+G+
Sbjct: 576 QETSLALETYRKACS--NGR---------GAVLLSVARGKVSEGIDFDHHYGRTVLMIGI 624
Query: 788 PY 789
P+
Sbjct: 625 PF 626
Score = 71 (30.1 bits), Expect = 5.6e-30, Sum P(3) = 5.6e-30
Identities = 15/36 (41%), Positives = 24/36 (66%)
Query: 20 YSIQTDFMKALYCSLENGGVSMLESPTGTGKTLSII 55
Y Q +M + +L+ GG +LE P+GTGKT+S++
Sbjct: 18 YPEQYSYMCDIKKTLDVGGNCILEMPSGTGKTVSLL 53
Score = 70 (29.7 bits), Expect = 5.6e-30, Sum P(3) = 5.6e-30
Identities = 18/58 (31%), Positives = 29/58 (50%)
Query: 851 MKAVNQSIGRAIRHINDHAAILLVDLRYASESSKRSCSHPANKLPRWIKDRLVSSTNN 908
M+ Q +GR +R +D+ ++L D R+A + N+LP+WI L S N
Sbjct: 658 MRHAAQCLGRVLRGKDDYGIMVLADRRFARKK---------NQLPKWIAQALNDSDTN 706
>UNIPROTKB|Q5AFE9 [details] [associations]
symbol:RAD3 "Putative uncharacterized protein RAD3"
species:237561 "Candida albicans SC5314" [GO:0003678 "DNA helicase
activity" evidence=IDA] [GO:0032508 "DNA duplex unwinding"
evidence=IDA] InterPro:IPR001945 InterPro:IPR002464
InterPro:IPR006554 InterPro:IPR006555 InterPro:IPR010614
InterPro:IPR010643 InterPro:IPR014013 Pfam:PF06733 Pfam:PF06777
Pfam:PF13307 PRINTS:PR00852 PROSITE:PS00690 PROSITE:PS51193
SMART:SM00488 SMART:SM00491 CGD:CAL0002854 INTERPRO:IPR013020
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0004003
EMBL:AACQ01000024 GO:GO:0003678 GO:GO:0006289 eggNOG:COG1199
TIGRFAMs:TIGR00604 KO:K10844 RefSeq:XP_720409.1 RefSeq:XP_888639.1
ProteinModelPortal:Q5AFE9 STRING:Q5AFE9 GeneID:3638014
GeneID:3704106 KEGG:cal:CaO19.7119 KEGG:cal:CaO19_7119
Uniprot:Q5AFE9
Length = 765
Score = 317 (116.6 bits), Expect = 5.6e-30, Sum P(3) = 5.6e-30
Identities = 139/602 (23%), Positives = 249/602 (41%)
Query: 221 KVYFCSRTHSQLSQFIKELRKTV-F-ANEIKVV----CLG--SRKNFCINEEVLRLGNST 272
K+ +CSRT S++ + + EL K + F ANE+ V LG SRKN C++ + +
Sbjct: 68 KIVYCSRTMSEIEKALIELHKLMEFRANELGEVEDFRGLGLTSRKNLCLHPTISKERKGV 127
Query: 273 HINERCLELQXXXXXXXXXXXXLGAEGKVRRTKAFSGCPVLRS----H-KLQKGFRNEIS 327
++E+C + G+++ K G P S H KL + +
Sbjct: 128 VVDEKCRRI---------------TNGQLKE-KIEKGVPTEDSLCSFHEKLYDLEPHNLV 171
Query: 328 QQGALDIEDLVHLGRHMRTCPYYGSRSMVPTADLVVLPYQSLLSKSARESLGLNL-KNNI 386
G + L+ + TCPY+ R M+P ++++ Y LL E + L K++I
Sbjct: 172 PPGVYSFDALIKYCKEEGTCPYFTVRRMIPFCNIIIYSYHYLLDPKIAERVSRELSKDSI 231
Query: 387 VIIDEAHNLADSLINMYNAKITLSQLENVHSHLEKYFGRFCSLLGPGNRRYIQTLMVFTR 446
VI DEAHN+ + I + +T L+ K + + +
Sbjct: 232 VIFDEAHNIDNVCIESLSLDLTDETLKKASRGANKLGEAIEDMKAQDSEKLQNEYEQLVE 291
Query: 447 AFLQVLLKEKDE----NDVR-QD--SENSTG----AKHAFDSSVAINEFLFS----LNID 491
Q + E N V QD E G +H E+L + L++
Sbjct: 292 GLRQAEIARDQELFMANPVLPQDLLDEAIPGNIRKGEHFIAFLKRFIEYLKTRMKVLHVI 351
Query: 492 NINLVKLLKYIKESNIIH-KVSGYGDKAASLQKGSVLKDGGENYEEGSILSGFQSLVDML 550
+ L+++KE I K + + SL ++ +++ ++ F +LV
Sbjct: 352 SETPTSFLQHLKELTYIERKPLRFCSERLSLLVRTLEVTEIDDFNALKDIATFATLV--- 408
Query: 551 ISLTNNDGDGRIIISKARPISSXXXXXXXXYLKYVMLTGEKVFSEIVEQAHAVILAGGTL 610
+ D ++I+ P + L + L + ++ +VI+ GT+
Sbjct: 409 ---STYDSGFQLILE---PYETEGSTVPNPILHFTCLDASIAIKPVFDRFSSVIITSGTI 462
Query: 611 QPIEETRERLFPWLSPNKFHFF---SCSHIVPPESILPVALSCGPTGKXXXXXXXXXXXX 667
P++ ++P + KF S + + S LP+ ++ G
Sbjct: 463 SPLD-----MYPKML--KFETVIQESYAMTLARRSFLPMIVTKGSDQVSISSRFEIRNDP 515
Query: 668 AMIEELGLLLCNLVSVVPEGIIVFFPSFEYVERVYGAWKSLGILDRIMKKKHVFREPRGN 727
+++ G LL + P+G++VFFPS+ Y+E + W+S+G+LD + K K + E
Sbjct: 516 SVVRNYGSLLIEFAKITPDGMVVFFPSYLYMESIISMWQSMGVLDEVWKHKLILVETPDA 575
Query: 728 THVESVLKEYQKTIDTLSSRPKEDSTPLNGAMLLAVVGGKISEGINFSDGMGRCIVMVGL 787
L+ Y+K + R GA+LL+V GK+SEGI+F GR ++M+G+
Sbjct: 576 QETSLALETYRKACS--NGR---------GAVLLSVARGKVSEGIDFDHHYGRTVLMIGI 624
Query: 788 PY 789
P+
Sbjct: 625 PF 626
Score = 71 (30.1 bits), Expect = 5.6e-30, Sum P(3) = 5.6e-30
Identities = 15/36 (41%), Positives = 24/36 (66%)
Query: 20 YSIQTDFMKALYCSLENGGVSMLESPTGTGKTLSII 55
Y Q +M + +L+ GG +LE P+GTGKT+S++
Sbjct: 18 YPEQYSYMCDIKKTLDVGGNCILEMPSGTGKTVSLL 53
Score = 70 (29.7 bits), Expect = 5.6e-30, Sum P(3) = 5.6e-30
Identities = 18/58 (31%), Positives = 29/58 (50%)
Query: 851 MKAVNQSIGRAIRHINDHAAILLVDLRYASESSKRSCSHPANKLPRWIKDRLVSSTNN 908
M+ Q +GR +R +D+ ++L D R+A + N+LP+WI L S N
Sbjct: 658 MRHAAQCLGRVLRGKDDYGIMVLADRRFARKK---------NQLPKWIAQALNDSDTN 706
>UNIPROTKB|F1PMH9 [details] [associations]
symbol:ERCC2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0006289 "nucleotide-excision
repair" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001945 InterPro:IPR002464 InterPro:IPR006554
InterPro:IPR006555 InterPro:IPR010614 InterPro:IPR010643
InterPro:IPR014013 Pfam:PF06733 Pfam:PF06777 Pfam:PF13307
PRINTS:PR00852 PROSITE:PS00690 PROSITE:PS51193 SMART:SM00488
SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004003 GO:GO:0006289 TIGRFAMs:TIGR00604
OMA:KDVDGKC GeneTree:ENSGT00550000075092 EMBL:AAEX03000876
Ensembl:ENSCAFT00000007249 Uniprot:F1PMH9
Length = 771
Score = 227 (85.0 bits), Expect = 6.1e-30, Sum P(3) = 6.1e-30
Identities = 80/323 (24%), Positives = 143/323 (44%)
Query: 582 LKYVMLTGEKVFSEIVEQAHAVILAGGTLQPIEETRERLFPWLSPNKFH---FFSCSHIV 638
L + + + E+ +VI+ GTL P++ ++P + FH + + +
Sbjct: 445 LHFSCMDASLAIKPVFERFQSVIITSGTLSPLD-----IYPKILD--FHPVTMATFTMTL 497
Query: 639 PPESILPVALSCGPTGKXXXXXXXXXXXXAMIEELGLLLCNLVSVVPEGIIVFFPSFEYV 698
+ P+ + G A+I G LL + +VVP+GI+ FF S++Y+
Sbjct: 498 ARVCLCPMIIGRGNDQVAISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFTSYQYM 557
Query: 699 ERVYGAWKSLGILDRIMKKKHVFREPRGNTHVESVLKEYQKTIDTLSSRPKEDSTPLNGA 758
E +W GIL+ I + K +F E + L++YQ+ + + R GA
Sbjct: 558 ESTVASWYEQGILENIQRNKLLFIETQDGAETSVALEKYQEACE--NGR---------GA 606
Query: 759 MLLAVVGGKISEGINFSDGMGRCIVMVGLPYPSPSNIELLERIKHIEGLGDTNSKTLNTS 818
+LL+V GK+SEGI+F GR ++M G+PY + L R++++ + L
Sbjct: 607 ILLSVARGKVSEGIDFVHHYGRAVIMFGVPYVYTQSRILKARLEYLRDQFQIRNDFLTL- 665
Query: 819 ASDAYYNGDAQAGFGILRSCRGRGKEYYENLCMKAVNQSIGRAIRHINDHA--AILLVDL 876
DA + AQ G +R G + + ++ G+ R I +H A L + +
Sbjct: 666 --DAMRHA-AQCVGGAIRGKTDYGLMVFADKRFARADKR-GKLPRWIQEHLTDANLNLTV 721
Query: 877 RYASESSK---RSCSHPANKLPR 896
+ +K R + P ++LPR
Sbjct: 722 DEGVQVAKYFLRQMAQPFHRLPR 744
Score = 169 (64.5 bits), Expect = 6.1e-30, Sum P(3) = 6.1e-30
Identities = 58/211 (27%), Positives = 95/211 (45%)
Query: 219 VLKVYFCSRTHSQLSQFIKELRKTVFANEI----KVVCLG----SRKNFCINEEVLRLGN 270
V K+ +CSRT ++ + I+ELRK + E K+ LG SRKN CI+ EV+ L
Sbjct: 79 VTKLIYCSRTVPEIEKVIEELRKLLNFYEKQEGEKLPFLGLALSSRKNLCIHPEVMPLRF 138
Query: 271 STHINERCLELQXXXXXXXXXXXXLGAEGKVRRTKAFSGCPVLRSHKLQKGFRNEISQQG 330
++ +C L + ++ + C + G R G
Sbjct: 139 GKDVDGKCHSLTASY-----------VRAQYQQDSSLPHCRFYEEFDVH-G-RQVPLPAG 185
Query: 331 ALDIEDLVHLGRHMRTCPYYGSRSMVPTADLVVLPYQSLLSKSARESLGLNL-KNNIVII 389
+++DL LG+ CPY+ +R + A++VV Y LL E + L + +V+
Sbjct: 186 IYNLDDLKALGQRQGWCPYFLARYSILHANVVVYSYHYLLDPKIAELVSKELARKAVVVF 245
Query: 390 DEAHNLADSLINMYNAKITLSQLENVHSHLE 420
DEAHN+ + I+ + IT L+ +LE
Sbjct: 246 DEAHNIDNVCIDSMSVNITRRTLDRCQGNLE 276
Score = 77 (32.2 bits), Expect = 3.9e-14, Sum P(3) = 3.9e-14
Identities = 20/58 (34%), Positives = 30/58 (51%)
Query: 851 MKAVNQSIGRAIRHINDHAAILLVDLRYASESSKRSCSHPANKLPRWIKDRLVSSTNN 908
M+ Q +G AIR D+ ++ D R+A + KR KLPRWI++ L + N
Sbjct: 668 MRHAAQCVGGAIRGKTDYGLMVFADKRFA-RADKRG------KLPRWIQEHLTDANLN 718
Score = 69 (29.3 bits), Expect = 6.1e-30, Sum P(3) = 6.1e-30
Identities = 15/36 (41%), Positives = 23/36 (63%)
Query: 20 YSIQTDFMKALYCSLENGGVSMLESPTGTGKTLSII 55
Y Q +M L +L+ G +LE P+GTGKT+S++
Sbjct: 30 YPEQFSYMLELKRTLDAKGHGVLEMPSGTGKTVSLL 65
>SGD|S000000973 [details] [associations]
symbol:RAD3 "5' to 3' DNA helicase" species:4932
"Saccharomyces cerevisiae" [GO:0000439 "core TFIIH complex"
evidence=IDA] [GO:0005675 "holo TFIIH complex" evidence=IDA]
[GO:0070816 "phosphorylation of RNA polymerase II C-terminal
domain" evidence=IDA] [GO:0051539 "4 iron, 4 sulfur cluster
binding" evidence=IEA] [GO:0016817 "hydrolase activity, acting on
acid anhydrides" evidence=IEA] [GO:0000990 "core RNA polymerase
binding transcription factor activity" evidence=IC] [GO:0000112
"nucleotide-excision repair factor 3 complex" evidence=IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0051536
"iron-sulfur cluster binding" evidence=IEA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=IEA] [GO:0006289
"nucleotide-excision repair" evidence=IEA] [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0010525 "regulation of transposition,
RNA-mediated" evidence=IMP] [GO:0043141 "ATP-dependent 5'-3' DNA
helicase activity" evidence=IDA] [GO:0000019 "regulation of mitotic
recombination" evidence=IMP] [GO:0003684 "damaged DNA binding"
evidence=IDA] [GO:0033683 "nucleotide-excision repair, DNA
incision" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0006139 "nucleobase-containing compound metabolic
process" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IDA] InterPro:IPR001945
InterPro:IPR002464 InterPro:IPR006554 InterPro:IPR006555
InterPro:IPR010614 InterPro:IPR010643 InterPro:IPR014013
Pfam:PF06733 Pfam:PF06777 Pfam:PF13307 PRINTS:PR00852
PROSITE:PS00690 PROSITE:PS51193 SMART:SM00488 SMART:SM00491
SGD:S000000973 INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0046872
GO:GO:0003684 GO:GO:0051539 GO:GO:0006366 EMBL:BK006939 EMBL:U18922
RefSeq:NP_011098.3 GeneID:856918 KEGG:sce:YER171W GO:GO:0070816
GO:GO:0005675 eggNOG:COG1199 TIGRFAMs:TIGR00604
HOGENOM:HOG000205390 KO:K10844 OMA:KDVDGKC GO:GO:0033683
GO:GO:0043141 GeneTree:ENSGT00550000075092 GO:GO:0000439
GO:GO:0000112 GO:GO:0010525 GO:GO:0000019 OrthoDB:EOG4G1QQH
EMBL:X02368 EMBL:K03293 PIR:A23308 RefSeq:NP_011102.3
ProteinModelPortal:P06839 DIP:DIP-2425N IntAct:P06839
MINT:MINT-617451 STRING:P06839 PaxDb:P06839 PeptideAtlas:P06839
EnsemblFungi:YER171W GeneID:856922 KEGG:sce:YER175C CYGD:YER171w
NextBio:983374 Genevestigator:P06839 GermOnline:YER171W
Uniprot:P06839
Length = 778
Score = 223 (83.6 bits), Expect = 7.1e-30, Sum P(4) = 7.1e-30
Identities = 54/209 (25%), Positives = 101/209 (48%)
Query: 582 LKYVMLTGEKVFSEIVEQAHAVILAGGTLQPIEETRERLFPWLSPNKFHFF-SCSHIVPP 640
+++ L + E+ +VI+ GT+ P++ ++P + K S + +
Sbjct: 435 MRFTCLDASIAIKPVFERFSSVIITSGTISPLD-----MYPRMLNFKTVLQKSYAMTLAK 489
Query: 641 ESILPVALSCGPTGKXXXXXXXXXXXXAMIEELGLLLCNLVSVVPEGIIVFFPSFEYVER 700
+S LP+ ++ G +++ G +L + P+G++VFFPS+ Y+E
Sbjct: 490 KSFLPMIITKGSDQVAISSRFEIRNDPSIVRNYGSMLVEFAKITPDGMVVFFPSYLYMES 549
Query: 701 VYGAWKSLGILDRIMKKKHVFREPRGNTHVESVLKEYQKTIDTLSSRPKEDSTPLNGAML 760
+ W+++GILD + K K + E L+ Y+K + R GA+L
Sbjct: 550 IVSMWQTMGILDEVWKHKLILVETPDAQETSLALETYRKACS--NGR---------GAIL 598
Query: 761 LAVVGGKISEGINFSDGMGRCIVMVGLPY 789
L+V GK+SEGI+F GR ++M+G+P+
Sbjct: 599 LSVARGKVSEGIDFDHQYGRTVLMIGIPF 627
Score = 141 (54.7 bits), Expect = 7.1e-30, Sum P(4) = 7.1e-30
Identities = 47/202 (23%), Positives = 86/202 (42%)
Query: 221 KVYFCSRTHSQLSQFIKELRKTV--------FANEIKVVCLGSRKNFCINEEVLRLGNST 272
K+ +CSRT S++ + + EL + + + + + L SRKN C++ EV + T
Sbjct: 68 KIIYCSRTMSEIEKALVELENLMDYRTKELGYQEDFRGLGLTSRKNLCLHPEVSKERKGT 127
Query: 273 HINERCLELQXXXXXXXXXXXXLGAEGKVRRTKAFSGCPVLRSHKLQKGFRNE-ISQQGA 331
++E+C + A+ K+ + + H+ E +G
Sbjct: 128 VVDEKCRRMTNGQ-----------AKRKLEEDPE-ANVELCEYHENLYNIEVEDYLPKGV 175
Query: 332 LDIEDLVHLGRHMRTCPYYGSRSMVPTADLVVLPYQSLLSKSARESLGLNL-KNNIVIID 390
E L+ CPY+ R M+ ++++ Y LL E + + K++IVI D
Sbjct: 176 FSFEKLLKYCEEKTLCPYFIVRRMISLCNIIIYSYHYLLDPKIAERVSNEVSKDSIVIFD 235
Query: 391 EAHNLADSLINMYNAKITLSQL 412
EAHN+ + I + +T L
Sbjct: 236 EAHNIDNVCIESLSLDLTTDAL 257
Score = 77 (32.2 bits), Expect = 7.1e-30, Sum P(4) = 7.1e-30
Identities = 16/36 (44%), Positives = 26/36 (72%)
Query: 20 YSIQTDFMKALYCSLENGGVSMLESPTGTGKTLSII 55
Y Q ++M + +L+ GG S+LE P+GTGKT+S++
Sbjct: 18 YPEQYNYMCDIKKTLDVGGNSILEMPSGTGKTVSLL 53
Score = 66 (28.3 bits), Expect = 7.1e-30, Sum P(4) = 7.1e-30
Identities = 21/70 (30%), Positives = 34/70 (48%)
Query: 839 RGRGKEYYENLCMKAVNQSIGRAIRHINDHAAILLVDLRYASESSKRSCSHPANKLPRWI 898
R R ++ M+ Q +GR +R +D+ ++L D R+ S KRS +LP+WI
Sbjct: 647 RIRENDFLSFDAMRHAAQCLGRVLRGKDDYGVMVLADRRF---SRKRS------QLPKWI 697
Query: 899 KDRLVSSTNN 908
L + N
Sbjct: 698 AQGLSDADLN 707
>ASPGD|ASPL0000055138 [details] [associations]
symbol:AN9436 species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0010525 "regulation of
transposition, RNA-mediated" evidence=IEA] [GO:0000019 "regulation
of mitotic recombination" evidence=IEA] [GO:0070816
"phosphorylation of RNA polymerase II C-terminal domain"
evidence=IEA] [GO:0000717 "nucleotide-excision repair, DNA duplex
unwinding" evidence=IEA] [GO:0033683 "nucleotide-excision repair,
DNA incision" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0003684 "damaged DNA
binding" evidence=IEA] [GO:0043141 "ATP-dependent 5'-3' DNA
helicase activity" evidence=IEA] [GO:0005675 "holo TFIIH complex"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0000439 "core
TFIIH complex" evidence=IEA] [GO:0000112 "nucleotide-excision
repair factor 3 complex" evidence=IEA] InterPro:IPR001945
InterPro:IPR006554 InterPro:IPR006555 InterPro:IPR010614
InterPro:IPR010643 InterPro:IPR014013 Pfam:PF06733 Pfam:PF06777
Pfam:PF13307 PRINTS:PR00852 PROSITE:PS51193 SMART:SM00488
SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0005634
EMBL:BN001308 GO:GO:0003677 GO:GO:0004003 GO:GO:0006289
TIGRFAMs:TIGR00604 OMA:KDVDGKC EnsemblFungi:CADANIAT00001938
Uniprot:C8VRA9
Length = 791
Score = 312 (114.9 bits), Expect = 1.3e-29, Sum P(3) = 1.3e-29
Identities = 141/614 (22%), Positives = 253/614 (41%)
Query: 221 KVYFCSRTHSQLSQFIKELRKTV--------FANEIKVVCLGSRKNFCINEEVLRLGNST 272
K+ +CSRT S++ + + ELR+ + + + + + L SRKN C++ V R + T
Sbjct: 68 KLIYCSRTMSEIEKALAELRELMKFRSEQLGYTEDFRALGLTSRKNLCLHPSVKREKSGT 127
Query: 273 HINERCLELQXXXXXXXXXXXXLGAEGKVRRTKAFSGCPVLRSHKLQKGFRNEISQQGAL 332
++ RC L G + V +L H L G
Sbjct: 128 VVDARCRSLTAGFVKEKKEK---GED--VELCVYHENLDLLEPHNLVP--------PGVF 174
Query: 333 DIEDLVHLGRHMRTCPYYGSRSMVPTADLVVLPYQSLLSKSARESLGLNL-KNNIVIIDE 391
++ L++ G + CPY+ +R M+P ++++ Y LL E + K+ IV+ DE
Sbjct: 175 TLDGLLNYGEQHKQCPYFSARRMMPYCNVIIYSYHYLLDPKIAERVSKEFSKDCIVVFDE 234
Query: 392 AHNLADSLINMYNAKITLSQLENVH---SHLEKYFGRFCSLLGPG-NRRYIQTLMVFTRA 447
AHN+ + I + IT L ++LE+ S N Y++ L+ R
Sbjct: 235 AHNIDNVCIESLSIDITEDSLRKATRGANNLERKIQDVKSSDAEKLNNEYMK-LVEGLRE 293
Query: 448 FLQVLLKEKDE---NDVRQDS---ENSTGAKHAFDSSVA-INEFLFSLNI-----DNINL 495
Q +++D+ N V D E G + VA + F+ L I+
Sbjct: 294 AEQA--RDEDQFISNPVLPDDLLKEAVPGNIRRAEHFVAFLKRFIEYLKTRMKVTHTISE 351
Query: 496 VKL--LKYIKESNIIHK--VSGYGDKAASLQKGSVLKDGGENYEEGSILSGFQSLVDMLI 551
L L ++KE I + + ++ SL + L + E+Y+ ++ F +LV
Sbjct: 352 TPLSFLNHVKELTFIERKPLRFCAERLTSLVRTLELINI-EDYQPLQEVATFATLV---- 406
Query: 552 SLTNNDGDGRIIISKARPISSXXXXXXXXYLKYVMLTGEKVFSEIVEQAHAVILAGGTLQ 611
+ D G ++I + P S L + L + ++ +V++ GTL
Sbjct: 407 --STYD-KGFLLILE--PFESEAATVPNPVLHFTCLDAAIAIKPVFDRFSSVVITSGTLS 461
Query: 612 PIEETRERL-FPWLSPNKFHFFSCSHIVPPESILPVALSCGPTGKXXXXXXXXXXXXAMI 670
P+E + L F + + S + S LP+ ++ G ++
Sbjct: 462 PLEMYPKMLGFTTVMQESY-----SMTLARRSFLPMIVTRGSDQAQISSSFQIRNDPGVV 516
Query: 671 EELGLLLCNLVSVVPEGIIVFFPSFEYVERVYGAWKSLGILDRIMKKKHVFREPRGNTHV 730
G ++ + P+G++VFFPS+ Y+E + W+ +GILD I K + E
Sbjct: 517 RNYGNIVLEFSRITPDGVVVFFPSYLYMESIISMWQGMGILDSIWNYKLILVETPDAQES 576
Query: 731 ESVLKEYQKTIDTLSSRPKEDSTPLNGAMLLAVVGGKISEGINFSDGMGRCIVMVGLPYP 790
L+ Y+ + R GA+L V GK+SEGI+F GR ++ +G+P+
Sbjct: 577 SLALETYRTAC--CNGR---------GALLFCVARGKVSEGIDFDHHYGRAVLCIGVPFQ 625
Query: 791 SPSNIELLERIKHI 804
+ L R++ +
Sbjct: 626 YTESRILKARLEFL 639
Score = 75 (31.5 bits), Expect = 1.3e-29, Sum P(3) = 1.3e-29
Identities = 21/70 (30%), Positives = 34/70 (48%)
Query: 839 RGRGKEYYENLCMKAVNQSIGRAIRHINDHAAILLVDLRYASESSKRSCSHPANKLPRWI 898
R R ++ M+ Q +GR +R +D+ ++L D R+ KR N+LP+WI
Sbjct: 644 RIRENDFLSFDAMRHAAQCLGRVLRGKDDYGIMVLADRRF---QKKR------NQLPKWI 694
Query: 899 KDRLVSSTNN 908
L+ S N
Sbjct: 695 SQALLESETN 704
Score = 69 (29.3 bits), Expect = 1.3e-29, Sum P(3) = 1.3e-29
Identities = 15/36 (41%), Positives = 24/36 (66%)
Query: 20 YSIQTDFMKALYCSLENGGVSMLESPTGTGKTLSII 55
Y Q +M L +L+ GG +LE P+GTGKT++++
Sbjct: 18 YPEQYAYMCDLKKTLDAGGHCVLEMPSGTGKTVTLL 53
>UNIPROTKB|J9NWT1 [details] [associations]
symbol:ERCC2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0006289 "nucleotide-excision
repair" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001945 InterPro:IPR002464 InterPro:IPR006554
InterPro:IPR006555 InterPro:IPR010614 InterPro:IPR010643
InterPro:IPR014013 Pfam:PF06733 Pfam:PF06777 Pfam:PF13307
PRINTS:PR00852 PROSITE:PS00690 PROSITE:PS51193 SMART:SM00488
SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004003 GO:GO:0006289 TIGRFAMs:TIGR00604
GeneTree:ENSGT00550000075092 EMBL:AAEX03000876
Ensembl:ENSCAFT00000044333 Uniprot:J9NWT1
Length = 707
Score = 222 (83.2 bits), Expect = 1.4e-29, Sum P(3) = 1.4e-29
Identities = 60/226 (26%), Positives = 107/226 (47%)
Query: 582 LKYVMLTGEKVFSEIVEQAHAVILAGGTLQPIEETRERLFPWLSPNKFH---FFSCSHIV 638
L + + + E+ +VI+ GTL P++ ++P + FH + + +
Sbjct: 433 LHFSCMDASLAIKPVFERFQSVIITSGTLSPLD-----IYPKILD--FHPVTMATFTMTL 485
Query: 639 PPESILPVALSCGPTGKXXXXXXXXXXXXAMIEELGLLLCNLVSVVPEGIIVFFPSFEYV 698
+ P+ + G A+I G LL + +VVP+GI+ FF S++Y+
Sbjct: 486 ARVCLCPMIIGRGNDQVAISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFTSYQYM 545
Query: 699 ERVYGAWKSLGILDRIMKKKHVFREPRGNTHVESVLKEYQKTIDTLSSRPKEDSTPLNGA 758
E +W GIL+ I + K +F E + L++YQ+ + + R GA
Sbjct: 546 ESTVASWYEQGILENIQRNKLLFIETQDGAETSVALEKYQEACE--NGR---------GA 594
Query: 759 MLLAVVGGKISEGINFSDGMGRCIVMVGLPYPSPSNIELLERIKHI 804
+LL+V GK+SEGI+F GR ++M G+PY + L R++++
Sbjct: 595 ILLSVARGKVSEGIDFVHHYGRAVIMFGVPYVYTQSRILKARLEYL 640
Score = 169 (64.5 bits), Expect = 1.4e-29, Sum P(3) = 1.4e-29
Identities = 58/211 (27%), Positives = 95/211 (45%)
Query: 219 VLKVYFCSRTHSQLSQFIKELRKTVFANEI----KVVCLG----SRKNFCINEEVLRLGN 270
V K+ +CSRT ++ + I+ELRK + E K+ LG SRKN CI+ EV+ L
Sbjct: 67 VTKLIYCSRTVPEIEKVIEELRKLLNFYEKQEGEKLPFLGLALSSRKNLCIHPEVMPLRF 126
Query: 271 STHINERCLELQXXXXXXXXXXXXLGAEGKVRRTKAFSGCPVLRSHKLQKGFRNEISQQG 330
++ +C L + ++ + C + G R G
Sbjct: 127 GKDVDGKCHSLTASY-----------VRAQYQQDSSLPHCRFYEEFDVH-G-RQVPLPAG 173
Query: 331 ALDIEDLVHLGRHMRTCPYYGSRSMVPTADLVVLPYQSLLSKSARESLGLNL-KNNIVII 389
+++DL LG+ CPY+ +R + A++VV Y LL E + L + +V+
Sbjct: 174 IYNLDDLKALGQRQGWCPYFLARYSILHANVVVYSYHYLLDPKIAELVSKELARKAVVVF 233
Query: 390 DEAHNLADSLINMYNAKITLSQLENVHSHLE 420
DEAHN+ + I+ + IT L+ +LE
Sbjct: 234 DEAHNIDNVCIDSMSVNITRRTLDRCQGNLE 264
Score = 69 (29.3 bits), Expect = 1.4e-29, Sum P(3) = 1.4e-29
Identities = 15/36 (41%), Positives = 23/36 (63%)
Query: 20 YSIQTDFMKALYCSLENGGVSMLESPTGTGKTLSII 55
Y Q +M L +L+ G +LE P+GTGKT+S++
Sbjct: 18 YPEQFSYMLELKRTLDAKGHGVLEMPSGTGKTVSLL 53
>UNIPROTKB|I3LBL1 [details] [associations]
symbol:BRIP1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0031965 "nuclear membrane" evidence=IEA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR010614 InterPro:IPR014013 Pfam:PF06733 PROSITE:PS51193
GO:GO:0005524 GO:GO:0005737 GO:GO:0003677 GO:GO:0006357
GO:GO:0004003 InterPro:IPR014001 SMART:SM00487
GeneTree:ENSGT00530000063199 EMBL:CU914462 EMBL:CU694840
Ensembl:ENSSSCT00000025154 OMA:TEAWDIE Uniprot:I3LBL1
Length = 709
Score = 190 (71.9 bits), Expect = 4.2e-29, Sum P(4) = 4.2e-29
Identities = 37/90 (41%), Positives = 54/90 (60%)
Query: 331 ALDIEDLVHLGRHMRTCPYYGSRSMVPTADLVVLPYQSLLSKSARESLGLNLKNNIVIID 390
A DIE+LV LG+ ++ CPYY +R ++ AD++ PY LL RES+ +NLK +VI+D
Sbjct: 339 AWDIEELVTLGKKIKACPYYTARELMQDADIIFCPYNYLLDVQIRESMEINLKEQVVILD 398
Query: 391 EAHNLADSLINMYNAKITLSQLENVHSHLE 420
EAHN+ D + +T QL L+
Sbjct: 399 EAHNIEDCARESASYSVTEVQLRFARDELD 428
Score = 117 (46.2 bits), Expect = 4.2e-29, Sum P(4) = 4.2e-29
Identities = 24/61 (39%), Positives = 39/61 (63%)
Query: 221 KVYFCSRTHSQLSQFIKELRKTVFANEIKVVCLGSRKNFCINEEVLRLGNSTHINERCLE 280
K+YF +RTH Q++Q +ELR+T ++ + + L SR + C++ EV+ GN E C+E
Sbjct: 250 KIYFGTRTHKQIAQITRELRRTAYSG-VPMTILSSRDHTCVHPEVV--GNFNR-KENCME 305
Query: 281 L 281
L
Sbjct: 306 L 306
Score = 100 (40.3 bits), Expect = 4.2e-29, Sum P(4) = 4.2e-29
Identities = 27/118 (22%), Positives = 49/118 (41%)
Query: 582 LKYVMLTGEKVFSEIVEQAHAVILAGGTLQPIEETRERLFPWLSPNKFHFFSCSHIVPPE 641
L + L FS+I + ++L GTL P++ L + +H++
Sbjct: 594 LNFWCLNPAVAFSDINGKVWNIVLTSGTLSPMKSFSSELGVTFTIQ----LEANHVINNS 649
Query: 642 SILPVALSCGPTGKXXXXXXXXXXXXAMIEELGLLLCNLVSVVPEGIIVFFPSFEYVE 699
+ + GP G+ A +E+G LL ++ V +GI+ F PS++ E
Sbjct: 650 QVWVGTIGSGPQGRNLCATFQHTETFAFQDEVGALLLSVCQTVSQGILCFLPSYKVRE 707
Score = 93 (37.8 bits), Expect = 4.2e-29, Sum P(4) = 4.2e-29
Identities = 18/42 (42%), Positives = 27/42 (64%)
Query: 20 YSIQTDFMKALYCSLENGGVSMLESPTGTGKTLSIICSALQW 61
Y Q M ++ L + +LESPTG+GK+L+++CSAL W
Sbjct: 22 YPSQLAMMNSIVRGLNSKQHCLLESPTGSGKSLALLCSALAW 63
>UNIPROTKB|E7EVE9 [details] [associations]
symbol:ERCC2 "TFIIH basal transcription factor complex
helicase XPD subunit" species:9606 "Homo sapiens" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR002464
InterPro:IPR006554 InterPro:IPR006555 InterPro:IPR010614
InterPro:IPR010643 InterPro:IPR014013 Pfam:PF06733 Pfam:PF06777
Pfam:PF13307 PROSITE:PS00690 PROSITE:PS51193 SMART:SM00488
SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004003 TIGRFAMs:TIGR00604 EMBL:L47234
HGNC:HGNC:3434 ChiTaRS:ERCC2 IPI:IPI00745781
ProteinModelPortal:E7EVE9 Ensembl:ENST00000391944 UCSC:uc010ejz.2
ArrayExpress:E7EVE9 Bgee:E7EVE9 Uniprot:E7EVE9
Length = 682
Score = 222 (83.2 bits), Expect = 5.4e-29, Sum P(5) = 5.4e-29
Identities = 60/226 (26%), Positives = 107/226 (47%)
Query: 582 LKYVMLTGEKVFSEIVEQAHAVILAGGTLQPIEETRERLFPWLSPNKFH---FFSCSHIV 638
L + + + E+ +VI+ GTL P++ ++P + FH + + +
Sbjct: 355 LHFSCMDASLAIKPVFERFQSVIITSGTLSPLD-----IYPKILD--FHPVTMATFTMTL 407
Query: 639 PPESILPVALSCGPTGKXXXXXXXXXXXXAMIEELGLLLCNLVSVVPEGIIVFFPSFEYV 698
+ P+ + G A+I G LL + +VVP+GI+ FF S++Y+
Sbjct: 408 ARVCLCPMIIGRGNDQVAISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFTSYQYM 467
Query: 699 ERVYGAWKSLGILDRIMKKKHVFREPRGNTHVESVLKEYQKTIDTLSSRPKEDSTPLNGA 758
E +W GIL+ I + K +F E + L++YQ+ + + R GA
Sbjct: 468 ESTVASWYEQGILENIQRNKLLFIETQDGAETSVALEKYQEACE--NGR---------GA 516
Query: 759 MLLAVVGGKISEGINFSDGMGRCIVMVGLPYPSPSNIELLERIKHI 804
+LL+V GK+SEGI+F GR ++M G+PY + L R++++
Sbjct: 517 ILLSVARGKVSEGIDFVHHYGRAVIMFGVPYVYTQSRILKARLEYL 562
Score = 83 (34.3 bits), Expect = 5.4e-29, Sum P(5) = 5.4e-29
Identities = 21/58 (36%), Positives = 30/58 (51%)
Query: 851 MKAVNQSIGRAIRHINDHAAILLVDLRYASESSKRSCSHPANKLPRWIKDRLVSSTNN 908
M+ Q +GRAIR D+ ++ D R+A KR KLPRWI++ L + N
Sbjct: 579 MRHAAQCVGRAIRGKTDYGLMVFADKRFA-RGDKRG------KLPRWIQEHLTDANLN 629
Score = 80 (33.2 bits), Expect = 5.4e-29, Sum P(5) = 5.4e-29
Identities = 23/56 (41%), Positives = 33/56 (58%)
Query: 219 VLKVYFCSRTHSQLSQFIKELRKTVFANEI----KVVCLG----SRKNFCINEEVL 266
V K+ +CSRT ++ + I+ELRK + E K+ LG SRKN CI+ E+L
Sbjct: 67 VTKLIYCSRTVPEIEKVIEELRKLLNFYEKQEGEKLPFLGLALSSRKNLCIHPEIL 122
Score = 75 (31.5 bits), Expect = 5.4e-29, Sum P(5) = 5.4e-29
Identities = 18/63 (28%), Positives = 32/63 (50%)
Query: 359 ADLVVLPYQSLLSKSARESLGLNL-KNNIVIIDEAHNLADSLINMYNAKITLSQLENVHS 417
A++VV Y LL + + L + +V+ DEAHN+ + I+ + +T L+
Sbjct: 124 ANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNIDNVCIDSMSVNLTRRTLDRCQG 183
Query: 418 HLE 420
+LE
Sbjct: 184 NLE 186
Score = 73 (30.8 bits), Expect = 5.4e-29, Sum P(5) = 5.4e-29
Identities = 15/36 (41%), Positives = 24/36 (66%)
Query: 20 YSIQTDFMKALYCSLENGGVSMLESPTGTGKTLSII 55
Y Q +M+ L +L+ G +LE P+GTGKT+S++
Sbjct: 18 YPEQFSYMRELKRTLDAKGHGVLEMPSGTGKTVSLL 53
>UNIPROTKB|F1MWN6 [details] [associations]
symbol:RTEL1 "Regulator of telomere elongation helicase 1"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004003 "ATP-dependent
DNA helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR006555 InterPro:IPR010614
InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307 PROSITE:PS51193
SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004003 TIGRFAMs:TIGR00604
GeneTree:ENSGT00530000063199 IPI:IPI00905335 EMBL:DAAA02036222
Ensembl:ENSBTAT00000052120 OMA:THEKEDE Uniprot:F1MWN6
Length = 564
Score = 217 (81.4 bits), Expect = 9.3e-29, Sum P(4) = 9.3e-29
Identities = 59/213 (27%), Positives = 102/213 (47%)
Query: 595 EIVEQA-HAVILAGGTLQPIEE-TRERLFPWLSPNKFHFFSCSHIVPPESILPVALSCGP 652
E+V Q +IL GTL P+ + E P+ P H++ I + GP
Sbjct: 333 ELVRQGVRTLILTSGTLAPMASFSLEMQIPF--PV---CLENPHVINQHQIWVGVIPKGP 387
Query: 653 TGKXXXXXXXXXXXXAMIEELGLLLCNLVSVVPEGIIVFFPSFEYVERVYGAWKSLGILD 712
G + LG +L N+ VVP G++VFFPS+ +E+ W++
Sbjct: 388 DGAQLSSAFDRRFSDECLSSLGKVLSNISRVVPHGLLVFFPSYPVMEKSLEFWRARDFTR 447
Query: 713 RIMKKKHVFREPRGNTHVESVLKEYQKTIDTLSSRPKEDSTPLNGAMLLAVVGGKISEGI 772
++ +K +F EPR V++ + + + P+ +GA+ LAV GK SEG+
Sbjct: 448 KLEVRKPLFVEPRSKGGFSEVMEAFYARV----AAPES-----SGAIFLAVCRGKASEGL 498
Query: 773 NFSDGMGRCIVMVGLPYPSPSNIELLERIKHIE 805
+F+D GR +++ GLPYP + +L +++ ++
Sbjct: 499 DFADVNGRGVIVTGLPYPPRMDPRVLLKMQFLD 531
Score = 172 (65.6 bits), Expect = 9.3e-29, Sum P(4) = 9.3e-29
Identities = 37/94 (39%), Positives = 54/94 (57%)
Query: 302 RRTKAFSGCPVLRSHKLQKGFRNEISQQGALDIEDLVHLGRHMRTCPYYGSRSMVPTADL 361
RR A C + + +K E++ LDIEDLV G + CPYY SR++ AD+
Sbjct: 32 RRKVASRSCHFYNNVE-EKSLEQELATP-ILDIEDLVRSGTKHKLCPYYLSRNLKQQADI 89
Query: 362 VVLPYQSLLSKSARESLGLNLKNNIVIIDEAHNL 395
+ +PY LL +R + G++LK +VI DEAHN+
Sbjct: 90 IFMPYNYLLDAKSRRAHGIDLKGTVVIFDEAHNV 123
Score = 50 (22.7 bits), Expect = 9.3e-29, Sum P(4) = 9.3e-29
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 842 GKEYYENLCMKAVNQSIGR 860
G ++Y +AVNQ+IGR
Sbjct: 546 GHDWYRQQASRAVNQAIGR 564
Score = 48 (22.0 bits), Expect = 9.3e-29, Sum P(4) = 9.3e-29
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 251 VC-LGSRKNFCINEEVLRLGNSTHI 274
VC LGSR+ CI+ EV + S H+
Sbjct: 3 VCVLGSREQLCIHPEVKKQ-ESNHM 26
>WB|WBGene00021752 [details] [associations]
symbol:Y50D7A.2 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004003 "ATP-dependent
DNA helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006289
"nucleotide-excision repair" evidence=IEA] [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006139 "nucleobase-containing compound metabolic
process" evidence=IEA] [GO:0016817 "hydrolase activity, acting on
acid anhydrides" evidence=IEA] [GO:0009792 "embryo development
ending in birth or egg hatching" evidence=IMP] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
InterPro:IPR001945 InterPro:IPR002464 InterPro:IPR006555
InterPro:IPR010614 InterPro:IPR010643 InterPro:IPR014013
Pfam:PF06733 Pfam:PF06777 Pfam:PF13307 PRINTS:PR00852
PROSITE:PS00690 PROSITE:PS51193 SMART:SM00491 INTERPRO:IPR013020
GO:GO:0005524 GO:GO:0005634 GO:GO:0009792 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0003677 GO:GO:0000003
EMBL:FO081772 GO:GO:0004003 GO:GO:0006289 eggNOG:COG1199
TIGRFAMs:TIGR00604 HOGENOM:HOG000205390 KO:K10844 OMA:KDVDGKC
GeneTree:ENSGT00550000075092 RefSeq:NP_497182.2 UniGene:Cel.30456
ProteinModelPortal:Q9N3L2 STRING:Q9N3L2 PaxDb:Q9N3L2
EnsemblMetazoa:Y50D7A.2 GeneID:175190 KEGG:cel:CELE_Y50D7A.2
UCSC:Y50D7A.2 CTD:175190 WormBase:Y50D7A.2 InParanoid:Q9N3L2
NextBio:887130 Uniprot:Q9N3L2
Length = 606
Score = 250 (93.1 bits), Expect = 1.5e-28, Sum P(3) = 1.5e-28
Identities = 68/236 (28%), Positives = 116/236 (49%)
Query: 596 IVEQAHAVILAGGTLQPIEETRERLFPWLSPNKFHFFSCSHIVPPESILPVALSCGPTGK 655
++ + +VI+ GTL P+E + L P+ F+ + P + P+ ++ G
Sbjct: 292 VMSRFQSVIITSGTLSPLEMYPKVLD--FDPSVIASFTMTLARP--CLSPLVVARGNDQV 347
Query: 656 XXXXXXXXXXXXAMIEELGLLLCNLVSVVPEGIIVFFPSFEYVERVYGAWKSLGILDRIM 715
A+I G L+ + S+VP+G++VFF S+ Y+E V G W I+D +M
Sbjct: 348 AMTSRFEQRADVAVIRNYGNLVLEMASLVPDGMVVFFTSYLYMENVIGVWYEQHIIDELM 407
Query: 716 KKKHVFREPRGNTHVESVLKEYQKTIDTLSSRPKEDSTPLNGAMLLAVVGGKISEGINFS 775
K K +F E + L++Y + D S R GA+L +V GK+SEGI+FS
Sbjct: 408 KYKLLFIETNDALETSAALEKYVEACD--SGR---------GAVLFSVARGKVSEGIDFS 456
Query: 776 DGMGRCIVMVGLPYPSPSNIELLERIKHIE---GLGDTNSKTLNTSASDAYYNGDA 828
+GRC++M+G+PY + L R++++ G+ + + T + A G A
Sbjct: 457 HHLGRCVIMLGIPYMYTESRVLRARLEYLRDQFGIKENDFLTFDAMRHTAQCMGRA 512
Score = 119 (46.9 bits), Expect = 1.5e-28, Sum P(3) = 1.5e-28
Identities = 26/91 (28%), Positives = 44/91 (48%)
Query: 335 EDLVHLGRHMRTCPYYGSRSMVPTADLVVLPYQSLLSKSARESLGLNL-KNNIVIIDEAH 393
EDL LGR + CPY+ +R + A +VV Y +L E + + + ++V+ DEAH
Sbjct: 27 EDLRSLGREKKICPYFTARQAINRAHIVVYSYHYILDPKIAELVSKDFSRKSVVVFDEAH 86
Query: 394 NLADSLINMYNAKITLSQLENVHSHLEKYFG 424
N+ + I + I+ + L+ G
Sbjct: 87 NIDNVCIESMSVAISQKNADRALQELQSLEG 117
Score = 75 (31.5 bits), Expect = 1.5e-28, Sum P(3) = 1.5e-28
Identities = 19/58 (32%), Positives = 31/58 (53%)
Query: 851 MKAVNQSIGRAIRHINDHAAILLVDLRYASESSKRSCSHPANKLPRWIKDRLVSSTNN 908
M+ Q +GRA+R D+ ++ D R+ S + KR KLPRW+++ L + N
Sbjct: 502 MRHTAQCMGRALRSKTDYGLMVFADKRF-SRNDKRG------KLPRWMQEYLEPACTN 552
>UNIPROTKB|C9K0E8 [details] [associations]
symbol:DDX11 "Probable ATP-dependent RNA helicase DDX11"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR006554
InterPro:IPR010614 InterPro:IPR014013 InterPro:IPR027076
Pfam:PF06733 PROSITE:PS51193 SMART:SM00488 GO:GO:0005524
GO:GO:0003677 GO:GO:0004003 PANTHER:PTHR11472:SF5 HGNC:HGNC:2736
EMBL:AC008013 HOGENOM:HOG000070023 IPI:IPI01012155
ProteinModelPortal:C9K0E8 SMR:C9K0E8 STRING:C9K0E8
Ensembl:ENST00000438391 UCSC:uc001qvo.2 ArrayExpress:C9K0E8
Bgee:C9K0E8 Uniprot:C9K0E8
Length = 302
Score = 204 (76.9 bits), Expect = 4.7e-25, Sum P(2) = 4.7e-25
Identities = 40/107 (37%), Positives = 66/107 (61%)
Query: 219 VLKVYFCSRTHSQLSQFIKELRKTVFANEIKVVCLGSRKNFCINEEVLRLGNSTHINERC 278
+ K+Y+CSRTHSQL+QF+ E++K+ F ++++V LGSR+N C+NE+V LG+ IN+RC
Sbjct: 197 ITKIYYCSRTHSQLAQFVHEVKKSPFGKDVRLVSLGSRQNLCVNEDVKSLGSVQLINDRC 256
Query: 279 LELQXXXXXXXXXXXXLGAEGKVRRTKAFSGCPVLRSHKLQKGFRNE 325
+++Q + K RR + + CP +H+ R+E
Sbjct: 257 VDMQRSRHEKKKGAEE--EKPKRRRQEKQAACPFY-NHEQMGLLRDE 300
Score = 145 (56.1 bits), Expect = 4.7e-25, Sum P(2) = 4.7e-25
Identities = 28/45 (62%), Positives = 33/45 (73%)
Query: 20 YSIQTDFMKALYCSLENGGVSMLESPTGTGKTLSIICSALQWVVD 64
YSIQ DFM LY LE G + + ESPTGTGK+LS+IC AL W+ D
Sbjct: 20 YSIQEDFMAELYRVLEAGKIGIFESPTGTGKSLSLICGALSWLRD 64
>UNIPROTKB|H0YFY8 [details] [associations]
symbol:DDX11 "Probable ATP-dependent RNA helicase DDX11"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0032508 "DNA
duplex unwinding" evidence=IEA] InterPro:IPR006555
InterPro:IPR027076 Pfam:PF13307 SMART:SM00491 GO:GO:0005524
GO:GO:0003676 GO:GO:0008026 PANTHER:PTHR11472:SF5 HGNC:HGNC:2736
EMBL:AC008013 Ensembl:ENST00000539702 Uniprot:H0YFY8
Length = 172
Score = 177 (67.4 bits), Expect = 4.8e-25, Sum P(2) = 4.8e-25
Identities = 36/80 (45%), Positives = 55/80 (68%)
Query: 730 VESVLKEYQKTIDTLSS----RPKEDSTPLNGAMLLAVVGGKISEGINFSDGMGRCIVMV 785
VE VL Y + I +S ++ + GA+LL+VVGGK+SEGINFSD +GRC+VMV
Sbjct: 3 VEQVLLAYSRCIQVRASCWAWACGQERGQVTGALLLSVVGGKMSEGINFSDNLGRCVVMV 62
Query: 786 GLPYPSPSNIELLERIKHIE 805
G+P+P+ + EL E++ +++
Sbjct: 63 GMPFPNIRSAELQEKMAYLD 82
Score = 146 (56.5 bits), Expect = 4.8e-25, Sum P(2) = 4.8e-25
Identities = 37/81 (45%), Positives = 48/81 (59%)
Query: 842 GKEYYENLCMKAVNQSIGRAIRHINDHAAILLVDLRYASESSKRSCSHPANKLPRWIKDR 901
GK ENLCMKAVNQSIGRAIRH D A+++L+D RYA KLP WI+ R
Sbjct: 95 GKALVENLCMKAVNQSIGRAIRHQKDFASVVLLDQRYARPPVLA-------KLPAWIRAR 147
Query: 902 L-VSSTNNYGEVHRLLHQFFK 921
+ V +T +G + +F +
Sbjct: 148 VEVKAT--FGPAIAAVQKFHR 166
>UNIPROTKB|F5H235 [details] [associations]
symbol:DDX11 "Probable ATP-dependent RNA helicase DDX11"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR006554
InterPro:IPR010614 InterPro:IPR014013 Pfam:PF06733 PROSITE:PS51193
SMART:SM00488 GO:GO:0005524 GO:GO:0003677 GO:GO:0004003
HGNC:HGNC:2736 EMBL:AC008013 IPI:IPI01012139
ProteinModelPortal:F5H235 SMR:F5H235 Ensembl:ENST00000539049
ArrayExpress:F5H235 Bgee:F5H235 Uniprot:F5H235
Length = 297
Score = 200 (75.5 bits), Expect = 1.2e-24, Sum P(2) = 1.2e-24
Identities = 32/64 (50%), Positives = 52/64 (81%)
Query: 219 VLKVYFCSRTHSQLSQFIKELRKTVFANEIKVVCLGSRKNFCINEEVLRLGNSTHINERC 278
+ K+Y+CSRTHSQL+QF+ E++K+ F ++++V LGSR+N C+NE+V LG+ IN+RC
Sbjct: 226 ITKIYYCSRTHSQLAQFVHEVKKSPFGKDVRLVSLGSRQNLCVNEDVKSLGSVQLINDRC 285
Query: 279 LELQ 282
+++Q
Sbjct: 286 VDMQ 289
Score = 145 (56.1 bits), Expect = 1.2e-24, Sum P(2) = 1.2e-24
Identities = 28/45 (62%), Positives = 33/45 (73%)
Query: 20 YSIQTDFMKALYCSLENGGVSMLESPTGTGKTLSIICSALQWVVD 64
YSIQ DFM LY LE G + + ESPTGTGK+LS+IC AL W+ D
Sbjct: 20 YSIQEDFMAELYRVLEAGKIGIFESPTGTGKSLSLICGALSWLRD 64
>UNIPROTKB|F6WZM0 [details] [associations]
symbol:DDX11 "Probable ATP-dependent RNA helicase DDX11"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR006554
InterPro:IPR010614 InterPro:IPR014013 Pfam:PF06733 PROSITE:PS51193
SMART:SM00488 GO:GO:0005524 GO:GO:0003677 GO:GO:0004003
HGNC:HGNC:2736 EMBL:AC008013 IPI:IPI00943235
ProteinModelPortal:F6WZM0 SMR:F6WZM0 Ensembl:ENST00000540935
ArrayExpress:F6WZM0 Bgee:F6WZM0 Uniprot:F6WZM0
Length = 288
Score = 200 (75.5 bits), Expect = 8.9e-22, Sum P(2) = 8.9e-22
Identities = 32/64 (50%), Positives = 52/64 (81%)
Query: 219 VLKVYFCSRTHSQLSQFIKELRKTVFANEIKVVCLGSRKNFCINEEVLRLGNSTHINERC 278
+ K+Y+CSRTHSQL+QF+ E++K+ F ++++V LGSR+N C+NE+V LG+ IN+RC
Sbjct: 200 ITKIYYCSRTHSQLAQFVHEVKKSPFGKDVRLVSLGSRQNLCVNEDVKSLGSVQLINDRC 259
Query: 279 LELQ 282
+++Q
Sbjct: 260 VDMQ 263
Score = 114 (45.2 bits), Expect = 8.9e-22, Sum P(2) = 8.9e-22
Identities = 22/38 (57%), Positives = 27/38 (71%)
Query: 27 MKALYCSLENGGVSMLESPTGTGKTLSIICSALQWVVD 64
M LY LE G + + ESPTGTGK+LS+IC AL W+ D
Sbjct: 1 MAELYRVLEAGKIGIFESPTGTGKSLSLICGALSWLRD 38
>UNIPROTKB|B4DMS8 [details] [associations]
symbol:DDX11 "Probable ATP-dependent RNA helicase DDX11"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR006554
InterPro:IPR010614 InterPro:IPR014013 Pfam:PF06733 PROSITE:PS51193
SMART:SM00488 GO:GO:0005524 GO:GO:0003677 GO:GO:0004003
UniGene:Hs.443960 HGNC:HGNC:2736 EMBL:AC008013 EMBL:AK297607
IPI:IPI00909981 SMR:B4DMS8 STRING:B4DMS8 Ensembl:ENST00000542129
HOGENOM:HOG000070023 HOVERGEN:HBG104020 Uniprot:B4DMS8
Length = 304
Score = 145 (56.1 bits), Expect = 1.1e-15, Sum P(2) = 1.1e-15
Identities = 28/45 (62%), Positives = 33/45 (73%)
Query: 20 YSIQTDFMKALYCSLENGGVSMLESPTGTGKTLSIICSALQWVVD 64
YSIQ DFM LY LE G + + ESPTGTGK+LS+IC AL W+ D
Sbjct: 20 YSIQEDFMAELYRVLEAGKIGIFESPTGTGKSLSLICGALSWLRD 64
Score = 127 (49.8 bits), Expect = 1.1e-15, Sum P(2) = 1.1e-15
Identities = 20/39 (51%), Positives = 33/39 (84%)
Query: 219 VLKVYFCSRTHSQLSQFIKELRKTVFANEIKVVCLGSRK 257
+ K+Y+CSRTHSQL+QF+ E++K+ F ++++V LGSR+
Sbjct: 226 ITKIYYCSRTHSQLAQFVHEVKKSPFGKDVRLVSLGSRQ 264
>UNIPROTKB|J3QKX0 [details] [associations]
symbol:BRIP1 "Fanconi anemia group J protein" species:9606
"Homo sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR006555 Pfam:PF13307
SMART:SM00491 GO:GO:0005524 GO:GO:0003676 GO:GO:0008026
EMBL:AC002994 EMBL:AC005969 EMBL:AC060798 HGNC:HGNC:20473
Ensembl:ENST00000584322 Uniprot:J3QKX0
Length = 180
Score = 200 (75.5 bits), Expect = 7.7e-15, P = 7.7e-15
Identities = 42/129 (32%), Positives = 78/129 (60%)
Query: 671 EELGLLLCNLVSVVPEGIIVFFPSFEYVERVYGAWKSLGILDRIMKKKHVFREPRGN--T 728
+E+G LL ++ V +GI+ F PS++ +E++ W S G+ + K V EP+G T
Sbjct: 2 DEVGALLLSVCQTVSQGILCFLPSYKLLEKLKERWLSTGLWHNLELVKTVIVEPQGGEKT 61
Query: 729 HVESVLKEYQKTIDTLSSRPKEDSTPLNGAMLLAVVGGKISEGINFSDGMGRCIVMVGLP 788
+ + +L+ Y D + + ++D GA+L+AV GK+SEG++FSD R ++ +G+P
Sbjct: 62 NFDELLQVYY---DAIKYKGEKD-----GALLVAVCRGKVSEGLDFSDDNARAVITIGIP 113
Query: 789 YPSPSNIEL 797
+P+ +++L
Sbjct: 114 FPNVKDLQL 122
>UNIPROTKB|Q4JC68 [details] [associations]
symbol:Saci_0192 "ATP-dependent DNA helicase Saci_0192"
species:330779 "Sulfolobus acidocaldarius DSM 639" [GO:0032508 "DNA
duplex unwinding" evidence=IDA] [GO:0043139 "5'-3' DNA helicase
activity" evidence=IDA] [GO:0051539 "4 iron, 4 sulfur cluster
binding" evidence=IDA] InterPro:IPR006555 InterPro:IPR010614
InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307 PROSITE:PS51193
SMART:SM00491 GO:GO:0005524 GO:GO:0046872 GO:GO:0003677
GO:GO:0006281 GO:GO:0006351 GO:GO:0051539 GO:GO:0004003
EMBL:CP000077 GenomeReviews:CP000077_GR eggNOG:COG1199
GO:GO:0043139 KO:K10844 RefSeq:YP_254904.1 PDB:3CRV PDB:3CRW
PDBsum:3CRV PDBsum:3CRW ProteinModelPortal:Q4JC68 GeneID:3474005
KEGG:sai:Saci_0192 HOGENOM:HOG000271001 OMA:CPYEYAK
ProtClustDB:CLSK802665 BioCyc:SACI330779:GH9J-270-MONOMER
EvolutionaryTrace:Q4JC68 Uniprot:Q4JC68
Length = 551
Score = 113 (44.8 bits), Expect = 1.8e-11, Sum P(6) = 1.8e-11
Identities = 37/135 (27%), Positives = 66/135 (48%)
Query: 341 GRHMRTCPYYGSRSMVPTADLVVLPYQSLLSKSARESLGLNLKNNIVIIDEAHNL--ADS 398
G + CPYY + + AD++ L Y RE + ++L+ +++IDEAHNL +
Sbjct: 131 GLQDKFCPYYSLLNSLYKADVIALTYPYFFIDRYREFIDIDLREYMIVIDEAHNLDKVNE 190
Query: 399 LINMYNAKITL------SQLENVHSHLEKYFGRFCSLLGPGNRRYIQTLMV--FTRAFLQ 450
L ++IT+ S+ E L K + ++ P + +YI+ V ++ L+
Sbjct: 191 LEERSLSEITIQMAIKQSKSEESRRILSKLLNQLREVVLP-DEKYIKVENVPKLSKEELE 249
Query: 451 VLLKEKDENDVRQDS 465
+L D D+R+DS
Sbjct: 250 ILAD--DYEDIRKDS 262
Score = 74 (31.1 bits), Expect = 1.8e-11, Sum P(6) = 1.8e-11
Identities = 18/43 (41%), Positives = 28/43 (65%)
Query: 854 VNQSIGRAIRHINDHAAILLVDLRYASESSKRS--CSHPANKL 894
+ Q+IGRAIR +ND + L+D R+ S K++ C + ANK+
Sbjct: 508 IKQAIGRAIRDVNDKCNVWLLDKRFESLYWKKNLKCLN-ANKM 549
Score = 72 (30.4 bits), Expect = 1.8e-11, Sum P(6) = 1.8e-11
Identities = 23/74 (31%), Positives = 42/74 (56%)
Query: 734 LKEYQKTIDTLSSRPKEDSTPLNGAMLLAVVG-GKISEGI---NFSDGMGRCIVMVGLPY 789
L +Y ++ D+ S + N +L+ VG GK++EGI N + +V+VG+PY
Sbjct: 415 LPKYVESEDS-SVEDLYSAISANNKVLIGSVGKGKLAEGIELRNNDRSLISDVVIVGIPY 473
Query: 790 PSPSN-IELL-ERI 801
P P + +++L +R+
Sbjct: 474 PPPDDYLKILAQRV 487
Score = 51 (23.0 bits), Expect = 1.8e-11, Sum P(6) = 1.8e-11
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 34 LENGGVSMLESPTGTGKTL-SIICS 57
L N + L +PTG+GKTL S++ S
Sbjct: 19 LRNNFLVALNAPTGSGKTLFSLLVS 43
Score = 44 (20.5 bits), Expect = 1.8e-11, Sum P(6) = 1.8e-11
Identities = 7/14 (50%), Positives = 12/14 (85%)
Query: 688 IIVFFPSFEYVERV 701
++V FPS+E ++RV
Sbjct: 396 VLVVFPSYEIMDRV 409
Score = 44 (20.5 bits), Expect = 1.8e-11, Sum P(6) = 1.8e-11
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 673 LGLLLCNLVSVV-PEGIIVFFPSFEYVERVYGAWKSLGILD 712
L LL N +S++ G + P EY+E+V+G +++ LD
Sbjct: 308 LNLLNDNELSIILMSGTL---PPREYMEKVWGIKRNMLYLD 345
Score = 44 (20.5 bits), Expect = 1.8e-11, Sum P(6) = 1.8e-11
Identities = 12/44 (27%), Positives = 19/44 (43%)
Query: 221 KVYFCSRTHSQLSQFIKELRKTVFANEIKVVCLGSRKNFCINEE 264
KV F RTH++ ++L K I L + + C+ E
Sbjct: 49 KVLFVVRTHNEFYPIYRDLTKIREKRNITFSFLVGKPSSCLYAE 92
>UNIPROTKB|K7EIT8 [details] [associations]
symbol:ERCC2 "TFIIH basal transcription factor complex
helicase XPD subunit" species:9606 "Homo sapiens" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR002464
InterPro:IPR006554 InterPro:IPR010614 InterPro:IPR010643
InterPro:IPR014013 Pfam:PF06733 Pfam:PF06777 PROSITE:PS00690
PROSITE:PS51193 SMART:SM00488 INTERPRO:IPR013020 TIGRFAMs:TIGR00604
EMBL:L47234 HGNC:HGNC:3434 Ensembl:ENST00000586131 Uniprot:K7EIT8
Length = 292
Score = 163 (62.4 bits), Expect = 2.2e-11, Sum P(2) = 2.2e-11
Identities = 57/212 (26%), Positives = 95/212 (44%)
Query: 219 VLKVYFCSRTHSQLSQFIKELRKTVFANEI----KVVCLG----SRKNFCINEEVLRLGN 270
V K+ +CSRT ++ + I+ELRK + E K+ LG SRKN CI+ EV L
Sbjct: 43 VTKLIYCSRTVPEIEKVIEELRKLLNFYEKQEGEKLPFLGLALSSRKNLCIHPEVTPLRF 102
Query: 271 STHINERCLELQXXXXXXXXXXXXLGAEGKVRRTKAFSGCPVLRSHKLQKGFRNEIS-QQ 329
++ +C L + + + C R ++ E+
Sbjct: 103 GKDVDGKCHSLTASY-----------VRAQYQHDTSLPHC---RFYEEFDAHGREVPLPA 148
Query: 330 GALDIEDLVHLGRHMRTCPYYGSRSMVPTADLVVLPYQSLLSKSARESLGLNL-KNNIVI 388
G +++DL LGR CPY+ +R + A++VV Y LL + + L + +V+
Sbjct: 149 GIYNLDDLKALGRRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARKAVVV 208
Query: 389 IDEAHNLADSLINMYNAKITLSQLENVHSHLE 420
DEAHN+ + I+ + +T L+ +LE
Sbjct: 209 FDEAHNIDNVCIDSMSVNLTRRTLDRCQGNLE 240
Score = 64 (27.6 bits), Expect = 2.2e-11, Sum P(2) = 2.2e-11
Identities = 13/29 (44%), Positives = 21/29 (72%)
Query: 27 MKALYCSLENGGVSMLESPTGTGKTLSII 55
M+ L +L+ G +LE P+GTGKT+S++
Sbjct: 1 MRELKRTLDAKGHGVLEMPSGTGKTVSLL 29
>UNIPROTKB|Q4KBT0 [details] [associations]
symbol:PFL_3198 "DEAD 2 domain protein" species:220664
"Pseudomonas protegens Pf-5" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR001650
InterPro:IPR006555 InterPro:IPR010614 InterPro:IPR014013
Pfam:PF06733 Pfam:PF13307 PROSITE:PS51193 PROSITE:PS51194
SMART:SM00491 GO:GO:0005524 GO:GO:0003677 EMBL:CP000076
GenomeReviews:CP000076_GR GO:GO:0004003 eggNOG:COG1199
RefSeq:YP_260303.1 ProteinModelPortal:Q4KBT0 STRING:Q4KBT0
GeneID:3478111 KEGG:pfl:PFL_3198 PATRIC:19875717
HOGENOM:HOG000183657 OMA:YLAFFSS ProtClustDB:CLSK866841
BioCyc:PFLU220664:GIX8-3213-MONOMER Uniprot:Q4KBT0
Length = 758
Score = 128 (50.1 bits), Expect = 1.2e-10, Sum P(5) = 1.2e-10
Identities = 41/119 (34%), Positives = 55/119 (46%)
Query: 305 KAFSG--CPVLRS-HKLQKGFRNEISQQGALDIEDLVHLGRHMRTCPYYGSRSMVPTADL 361
KA G CP+ + + R SQ LD + L + + CPYY S+ M +DL
Sbjct: 280 KACHGESCPLAKGFYDRLPAARQAASQVPLLDRQALREVALEHQVCPYYLSQEMARWSDL 339
Query: 362 VVLPYQSLLSKSARESLGLNLKNN---IVIIDEAHNLADSLINMYNAKITLSQLENVHS 417
VV Y SA GL N V++DEAHNL + MY+A + QL +V S
Sbjct: 340 VVADYNYYFDFSAL-LFGLAQANQWQVAVLVDEAHNLVERGRGMYSASLDQQQLASVRS 397
Score = 70 (29.7 bits), Expect = 1.2e-10, Sum P(5) = 1.2e-10
Identities = 23/83 (27%), Positives = 40/83 (48%)
Query: 729 HVESVLKEYQKTIDTLSSRP-KEDSTPLNGAMLLAVVGGKISEGINF--SDGMGRCIVMV 785
H + VL + +D S + + P + AV+GG EGI+ S +G + +
Sbjct: 617 HPDIVLWCQSRGMDEASRQDFLQQFRPEGQGIGFAVLGGAFGEGIDLPGSKLIGAFVATL 676
Query: 786 GLPYPSPSNIELLERIKHIEGLG 808
GLP +P N ++ +R+ + G G
Sbjct: 677 GLPQLNPLNEQMKQRMAALFGSG 699
Score = 59 (25.8 bits), Expect = 1.2e-10, Sum P(5) = 1.2e-10
Identities = 15/41 (36%), Positives = 24/41 (58%)
Query: 840 GRGKEY-YENLCMKAVNQSIGRAIRHINDHAAILLVDLRYA 879
G G +Y Y ++ V Q+ GR IR +D ++L+D R+A
Sbjct: 697 GSGYDYTYLYPGLQKVVQAAGRVIRGQSDRGVLVLIDDRFA 737
Score = 56 (24.8 bits), Expect = 1.2e-10, Sum P(5) = 1.2e-10
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 23 QTDFMKALYCSLENGGVSMLESPTGTGKTLSIICSALQ 60
Q +++Y ++ G + ++PTG GKTL I L+
Sbjct: 187 QRALAESVYKAVSTGRCLLAQAPTGIGKTLGTIFPMLK 224
Score = 49 (22.3 bits), Expect = 1.2e-10, Sum P(5) = 1.2e-10
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 676 LLCNLVSVVPEGIIVFFPSFEYVERVYG 703
L+ + P + FF SF+Y+++V G
Sbjct: 584 LMARQFAARPGNYLAFFSSFDYLQQVAG 611
>UNIPROTKB|F5GXJ8 [details] [associations]
symbol:DDX11 "Probable ATP-dependent RNA helicase DDX11"
species:9606 "Homo sapiens" [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] InterPro:IPR006554 InterPro:IPR014013
PROSITE:PS51193 SMART:SM00488 GO:GO:0004003 HGNC:HGNC:2736
EMBL:AC008013 IPI:IPI01011771 ProteinModelPortal:F5GXJ8 SMR:F5GXJ8
Ensembl:ENST00000415475 ArrayExpress:F5GXJ8 Bgee:F5GXJ8
Uniprot:F5GXJ8
Length = 224
Score = 114 (45.2 bits), Expect = 3.8e-09, Sum P(2) = 3.8e-09
Identities = 22/38 (57%), Positives = 27/38 (71%)
Query: 27 MKALYCSLENGGVSMLESPTGTGKTLSIICSALQWVVD 64
M LY LE G + + ESPTGTGK+LS+IC AL W+ D
Sbjct: 1 MAELYRVLEAGKIGIFESPTGTGKSLSLICGALSWLRD 38
Score = 92 (37.4 bits), Expect = 3.8e-09, Sum P(2) = 3.8e-09
Identities = 14/24 (58%), Positives = 22/24 (91%)
Query: 219 VLKVYFCSRTHSQLSQFIKELRKT 242
+ K+Y+CSRTHSQL+QF+ E++K+
Sbjct: 200 ITKIYYCSRTHSQLAQFVHEVKKS 223
>UNIPROTKB|F5GXL6 [details] [associations]
symbol:DDX11 "Probable ATP-dependent RNA helicase DDX11"
species:9606 "Homo sapiens" [GO:0016817 "hydrolase activity, acting
on acid anhydrides" evidence=IEA] InterPro:IPR014013
PROSITE:PS51193 HGNC:HGNC:2736 GO:GO:0016817 EMBL:AC008013
IPI:IPI01010239 ProteinModelPortal:F5GXL6 SMR:F5GXL6
Ensembl:ENST00000535317 ArrayExpress:F5GXL6 Bgee:F5GXL6
Uniprot:F5GXL6
Length = 192
Score = 145 (56.1 bits), Expect = 5.9e-09, P = 5.9e-09
Identities = 28/45 (62%), Positives = 33/45 (73%)
Query: 20 YSIQTDFMKALYCSLENGGVSMLESPTGTGKTLSIICSALQWVVD 64
YSIQ DFM LY LE G + + ESPTGTGK+LS+IC AL W+ D
Sbjct: 56 YSIQEDFMAELYRVLEAGKIGIFESPTGTGKSLSLICGALSWLRD 100
>UNIPROTKB|F5GYY1 [details] [associations]
symbol:DDX11 "Probable ATP-dependent RNA helicase DDX11"
species:9606 "Homo sapiens" [GO:0016817 "hydrolase activity, acting
on acid anhydrides" evidence=IEA] InterPro:IPR014013
PROSITE:PS51193 HGNC:HGNC:2736 GO:GO:0016817 EMBL:AC008013
IPI:IPI01010700 ProteinModelPortal:F5GYY1 SMR:F5GYY1
Ensembl:ENST00000542244 ArrayExpress:F5GYY1 Bgee:F5GYY1
Uniprot:F5GYY1
Length = 171
Score = 145 (56.1 bits), Expect = 5.9e-09, P = 5.9e-09
Identities = 28/45 (62%), Positives = 33/45 (73%)
Query: 20 YSIQTDFMKALYCSLENGGVSMLESPTGTGKTLSIICSALQWVVD 64
YSIQ DFM LY LE G + + ESPTGTGK+LS+IC AL W+ D
Sbjct: 20 YSIQEDFMAELYRVLEAGKIGIFESPTGTGKSLSLICGALSWLRD 64
>UNIPROTKB|I3LHB7 [details] [associations]
symbol:ERCC2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR006555 Pfam:PF13307
GO:GO:0005524 GO:GO:0003676 GO:GO:0008026
GeneTree:ENSGT00550000075092 Ensembl:ENSSSCT00000032501 OMA:GGEGREM
Uniprot:I3LHB7
Length = 138
Score = 140 (54.3 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 27/72 (37%), Positives = 42/72 (58%)
Query: 668 AMIEELGLLLCNLVSVVPEGIIVFFPSFEYVERVYGAWKSLGILDRIMKKKHVFREPRGN 727
A+I G LL + +VVP+GI+ FF S++Y+E AW GIL+ I + K +F E +
Sbjct: 40 AVIRNYGNLLLEMSAVVPDGIVAFFTSYQYMESTVAAWYEQGILENIQRNKLLFIETQDG 99
Query: 728 THVESVLKEYQK 739
L++YQ+
Sbjct: 100 AETSVALEKYQE 111
>UNIPROTKB|Q880W4 [details] [associations]
symbol:PSPTO_3036 "Uncharacterized protein" species:223283
"Pseudomonas syringae pv. tomato str. DC3000" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001650 InterPro:IPR006555 InterPro:IPR010614
InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307 PROSITE:PS51193
PROSITE:PS51194 SMART:SM00491 GO:GO:0005524 GO:GO:0003677
GO:GO:0004003 EMBL:AE016853 GenomeReviews:AE016853_GR
eggNOG:COG1199 HOGENOM:HOG000183657 OMA:YLAFFSS
ProtClustDB:CLSK866841 RefSeq:NP_792831.1 GeneID:1184693
KEGG:pst:PSPTO_3036 PATRIC:19997439
BioCyc:PSYR223283:GJIX-3084-MONOMER Uniprot:Q880W4
Length = 761
Score = 115 (45.5 bits), Expect = 5.0e-08, Sum P(5) = 5.0e-08
Identities = 43/152 (28%), Positives = 66/152 (43%)
Query: 264 EVLRLGNSTHINERCLELQXXXXXXXXXXXXLGAEGKVRRTKAFSGCPVLRSHKLQKGFR 323
EV+R ++ + R LEL A+ + P RS L+ +
Sbjct: 258 EVIR-HSAPELRLRVLELVARDKACEHPDKACNADSCPLARGFYDRLPAARSAALESPWL 316
Query: 324 NEISQQGALDIEDLVHLGRHMRTCPYYGSRSMVPTADLVVLPYQSLLSKSARE-SLG-LN 381
N+ + A L+H + CPYY S+ + AD+V+ Y SA LG LN
Sbjct: 317 NQAGVREAA----LLH-----QVCPYYLSQELARWADVVIADYNYYFDLSALLFGLGQLN 367
Query: 382 LKNNIVIIDEAHNLADSLINMYNAKITLSQLE 413
V++DEAHN+ + MY+A + SQL+
Sbjct: 368 QWRVAVLVDEAHNMVERARQMYSASLDQSQLK 399
Score = 68 (29.0 bits), Expect = 5.0e-08, Sum P(5) = 5.0e-08
Identities = 17/49 (34%), Positives = 26/49 (53%)
Query: 762 AVVGGKISEGINFSDG--MGRCIVMVGLPYPSPSNIELLERIKHIEGLG 808
AV+GG EGI+ +G I +GLP +P N + +R+ + G G
Sbjct: 656 AVLGGAFGEGIDLPGARLIGAFIATLGLPQLNPVNEQFKQRMAALFGAG 704
Score = 60 (26.2 bits), Expect = 5.0e-08, Sum P(5) = 5.0e-08
Identities = 15/41 (36%), Positives = 24/41 (58%)
Query: 840 GRGKEY-YENLCMKAVNQSIGRAIRHINDHAAILLVDLRYA 879
G G +Y Y ++ V Q+ GR IR +D ++L+D R+A
Sbjct: 702 GAGYDYTYLYPGVQKVVQAAGRVIRSQSDSGVVMLIDDRFA 742
Score = 53 (23.7 bits), Expect = 5.0e-08, Sum P(5) = 5.0e-08
Identities = 11/38 (28%), Positives = 21/38 (55%)
Query: 23 QTDFMKALYCSLENGGVSMLESPTGTGKTLSIICSALQ 60
Q +++Y ++ G M ++PTG GKT+ + L+
Sbjct: 193 QRALAESVYKAVSTGCCLMAQAPTGIGKTVGTLFPLLK 230
Score = 40 (19.1 bits), Expect = 5.0e-08, Sum P(5) = 5.0e-08
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 676 LLCNLVSVVPEGIIVFFPSFEYVERV 701
L+ + P + FF SF+Y+ +V
Sbjct: 589 LMATQFAARPGNYLAFFSSFDYLLQV 614
>UNIPROTKB|F1SK82 [details] [associations]
symbol:F1SK82 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] InterPro:IPR014013 PROSITE:PS51193
GeneTree:ENSGT00530000063199 GO:GO:0016817 EMBL:CU861969
Ensembl:ENSSSCT00000000811 OMA:CAVAKHP Uniprot:F1SK82
Length = 210
Score = 145 (56.1 bits), Expect = 7.7e-08, P = 7.7e-08
Identities = 28/45 (62%), Positives = 33/45 (73%)
Query: 20 YSIQTDFMKALYCSLENGGVSMLESPTGTGKTLSIICSALQWVVD 64
Y IQ DFM ALY LE G + + ESPTGTGK+LS+IC AL W+ D
Sbjct: 20 YPIQKDFMAALYQVLEAGKIGIFESPTGTGKSLSLICGALSWLRD 64
>TAIR|locus:504956155 [details] [associations]
symbol:AT1G09995 "AT1G09995" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0004386
EMBL:BT024635 IPI:IPI00544494 RefSeq:NP_683295.1 UniGene:At.44893
ProteinModelPortal:Q29QC1 EnsemblPlants:AT1G09995.1 GeneID:837534
KEGG:ath:AT1G09995 TAIR:At1g09995 eggNOG:KOG1133
Genevestigator:Q29QC1 Uniprot:Q29QC1
Length = 88
Score = 133 (51.9 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 26/72 (36%), Positives = 46/72 (63%)
Query: 389 IDEAHNLADSLINMYNAKITL---SQLENVHSHLEKYFGRFCSLLGPGNRRYIQTLMVFT 445
ID ++ + + +++ KI+ +LE++H +E Y GRF +LL GN RYIQ +++ T
Sbjct: 11 IDSSNQIDERCLDLQKKKISQVSKKKLEDIHCSIESYLGRFQNLLRAGNMRYIQIMLILT 70
Query: 446 RAFLQVLLKEKD 457
RAFL+ L +++
Sbjct: 71 RAFLKPLASDRN 82
>UNIPROTKB|H0YGL4 [details] [associations]
symbol:DDX11 "Probable ATP-dependent RNA helicase DDX11"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0032508 "DNA
duplex unwinding" evidence=IEA] InterPro:IPR006555
InterPro:IPR027076 Pfam:PF13307 SMART:SM00491 GO:GO:0005524
GO:GO:0003676 GO:GO:0008026 PANTHER:PTHR11472:SF5 HGNC:HGNC:2736
EMBL:AC008013 Ensembl:ENST00000545115 Uniprot:H0YGL4
Length = 76
Score = 112 (44.5 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 25/51 (49%), Positives = 33/51 (64%)
Query: 730 VESVLKEYQKTIDTLSSRPKEDSTPLNGAMLLAVVGGKISEGINFSDGMGR 780
VE VL Y + I ++ + GA+LL+VVGGK+SEGINFSD +GR
Sbjct: 3 VEQVLLAYSRCIQACG----QERGQVTGALLLSVVGGKMSEGINFSDNLGR 49
>WB|WBGene00021759 [details] [associations]
symbol:Y50D7A.11 species:6239 "Caenorhabditis elegans"
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=IEA]
[GO:0016818 "hydrolase activity, acting on acid anhydrides, in
phosphorus-containing anhydrides" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0002009 "morphogenesis of an epithelium" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] InterPro:IPR006554
InterPro:IPR010614 InterPro:IPR014013 Pfam:PF06733 PROSITE:PS51193
SMART:SM00488 GO:GO:0005524 GO:GO:0002009 GO:GO:0040010
GO:GO:0003677 GO:GO:0040035 EMBL:FO081772 GO:GO:0004003
eggNOG:COG1199 GeneTree:ENSGT00550000075092 RefSeq:NP_001022900.1
UniGene:Cel.9728 ProteinModelPortal:Q7YZG6 SMR:Q7YZG6 PaxDb:Q7YZG6
EnsemblMetazoa:Y50D7A.11 GeneID:3565352 KEGG:cel:CELE_Y50D7A.11
UCSC:Y50D7A.11 CTD:3565352 WormBase:Y50D7A.11 HOGENOM:HOG000203646
InParanoid:Q7YZG6 NextBio:956143 Uniprot:Q7YZG6
Length = 197
Score = 80 (33.2 bits), Expect = 0.00056, Sum P(2) = 0.00056
Identities = 22/71 (30%), Positives = 39/71 (54%)
Query: 221 KVYFCSRTHSQLSQFIKELR-------KTVFANEIKV-VCLGSRKNFCINEEV--LRLGN 270
K+ +CSRT ++ + ++E++ K K+ V + +RKN C+NE V LR GN
Sbjct: 69 KLVYCSRTIPEIEKCVEEMKVLYDYWEKETGQPVAKITVAMSARKNLCVNEPVAALRFGN 128
Query: 271 STHINERCLEL 281
+ ++ C +L
Sbjct: 129 T--VDSACQKL 137
Score = 78 (32.5 bits), Expect = 0.00056, Sum P(2) = 0.00056
Identities = 16/44 (36%), Positives = 28/44 (63%)
Query: 20 YSIQTDFMKALYCSLENGGVSMLESPTGTGKTLSIICSALQWVV 63
Y Q +MK + +L+ G +LE P+GTGKT+S++ L +++
Sbjct: 18 YPEQVLYMKEVKKALDARGHGLLEMPSGTGKTVSLLSLVLAYMI 61
>UNIPROTKB|Q724Q2 [details] [associations]
symbol:LMOf2365_0172 "Putative uncharacterized protein"
species:265669 "Listeria monocytogenes serotype 4b str. F2365"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001650 InterPro:IPR006555
InterPro:IPR010614 InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307
PROSITE:PS51193 PROSITE:PS51194 SMART:SM00491 GO:GO:0005524
GO:GO:0003677 GO:GO:0004003 EMBL:AE017262 GenomeReviews:AE017262_GR
eggNOG:COG1199 HOGENOM:HOG000183657 OMA:YLAFFSS RefSeq:YP_012782.1
ProteinModelPortal:Q724Q2 STRING:Q724Q2 GeneID:2798762
KEGG:lmf:LMOf2365_0172 PATRIC:20321523 ProtClustDB:CLSK2518435
Uniprot:Q724Q2
Length = 779
Score = 71 (30.1 bits), Expect = 0.00079, Sum P(4) = 0.00079
Identities = 15/43 (34%), Positives = 28/43 (65%)
Query: 840 GRGKEY-YENLCMKAVNQSIGRAIRHINDHAAILLVDLRYASE 881
G+G +Y Y+ M V Q++GR IR +D +LL++ R++++
Sbjct: 704 GQGFDYAYQIPGMNKVLQAVGRVIRGESDRGVVLLIEERFSAD 746
Score = 71 (30.1 bits), Expect = 0.00079, Sum P(4) = 0.00079
Identities = 28/134 (20%), Positives = 52/134 (38%)
Query: 310 CPVLRSH--KLQKGFRNEISQQGALDIEDLVHLGRHMRTCPYYGSRSMVPTADLVVLPYQ 367
C R + +L + + + + A+ + + R CP+ S + D++V Y
Sbjct: 289 CQFARGYYDRLNEALFDMLQSEEAITRQVVEGYARKYTLCPFELSLDVALFCDVIVCDYN 348
Query: 368 SLLSKSA--RESLGLNLKNNIVIIDEAHNLADSLINMYNAKITLSQLENVHSHLE-KYFG 424
L + ++DE HNL D +MY+A + S + V L+ K
Sbjct: 349 YLFDPVVYLKRFFAEGPGKYTFLVDEVHNLVDRARSMYSATLKKSTVMQVKRGLDSKKNK 408
Query: 425 RFCSLLGPGNRRYI 438
R + + N+ I
Sbjct: 409 RLLNAINVMNKEMI 422
Score = 64 (27.6 bits), Expect = 0.00079, Sum P(4) = 0.00079
Identities = 19/62 (30%), Positives = 30/62 (48%)
Query: 680 LVSVVPEGIIVFFPSFEYVERVYGAWKSLGILDRIMKKKHVFREPRGNTHVESVLKEYQK 739
LVS I FFPSF Y+++VY +K R+ K++ E + +E E +
Sbjct: 593 LVSGKNGNYIFFFPSFLYLQKVYDLFKEKYPNIRLQKQETAMDEKQREHFLEDFHAENVE 652
Query: 740 TI 741
T+
Sbjct: 653 TL 654
Score = 52 (23.4 bits), Expect = 0.00079, Sum P(4) = 0.00079
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 23 QTDFMKALYCSLENGGVSMLESPTGTGKTLSII 55
Q + A+Y ++ + E+PTG GKT+S +
Sbjct: 191 QRELAIAVYRTISSEESLFCEAPTGIGKTMSTL 223
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.135 0.395 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 929 818 0.0010 121 3 11 22 0.40 34
37 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 109
No. of states in DFA: 621 (66 KB)
Total size of DFA: 401 KB (2195 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 68.21u 0.12s 68.33t Elapsed: 00:00:04
Total cpu time: 68.25u 0.12s 68.37t Elapsed: 00:00:04
Start: Mon May 20 17:42:15 2013 End: Mon May 20 17:42:19 2013
WARNINGS ISSUED: 1