Query 002378
Match_columns 929
No_of_seqs 278 out of 1735
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 23:56:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002378.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002378hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a15_A XPD helicase, ATP-depen 100.0 6E-92 2E-96 846.5 44.7 598 17-926 2-615 (620)
2 3crv_A XPD/RAD3 related DNA he 100.0 1.9E-78 6.5E-83 723.0 40.8 474 221-880 49-534 (551)
3 2vl7_A XPD; helicase, unknown 100.0 3.8E-69 1.3E-73 640.8 38.1 477 221-899 53-537 (540)
4 3sqw_A ATP-dependent RNA helic 99.5 3.9E-12 1.4E-16 152.2 30.4 82 684-789 287-370 (579)
5 3i5x_A ATP-dependent RNA helic 99.5 9.5E-12 3.2E-16 148.2 28.9 82 684-789 338-421 (563)
6 3pey_A ATP-dependent RNA helic 99.4 2.8E-11 9.6E-16 136.4 29.1 121 677-877 234-356 (395)
7 2i4i_A ATP-dependent RNA helic 99.4 1.9E-11 6.6E-16 139.3 27.2 79 685-789 276-355 (417)
8 1xti_A Probable ATP-dependent 99.4 5.9E-11 2E-15 133.9 29.8 80 684-789 249-329 (391)
9 2db3_A ATP-dependent RNA helic 99.4 4.2E-11 1.4E-15 138.1 27.7 87 677-789 292-379 (434)
10 1hv8_A Putative ATP-dependent 99.4 2.3E-11 7.8E-16 135.7 22.9 87 677-789 230-317 (367)
11 1s2m_A Putative ATP-dependent 99.4 9.7E-11 3.3E-15 132.8 26.9 79 684-788 257-336 (400)
12 2j0s_A ATP-dependent RNA helic 99.3 1.7E-10 5.9E-15 131.3 26.9 79 684-788 275-354 (410)
13 3eiq_A Eukaryotic initiation f 99.3 1.7E-10 5.7E-15 131.3 24.3 80 684-789 279-359 (414)
14 3fht_A ATP-dependent RNA helic 99.3 2.2E-10 7.7E-15 130.0 24.6 114 684-877 265-379 (412)
15 3oiy_A Reverse gyrase helicase 99.3 8.1E-10 2.8E-14 126.2 27.2 76 684-789 251-331 (414)
16 1fuu_A Yeast initiation factor 99.3 1.4E-11 4.7E-16 139.2 11.9 79 685-789 259-338 (394)
17 2z0m_A 337AA long hypothetical 99.2 8.9E-10 3E-14 121.3 23.0 78 682-789 217-295 (337)
18 2xgj_A ATP-dependent RNA helic 99.0 1E-08 3.4E-13 129.5 24.8 45 12-60 80-124 (1010)
19 3l9o_A ATP-dependent RNA helic 99.0 1.5E-08 5.1E-13 129.1 24.9 45 13-61 179-223 (1108)
20 4a4z_A Antiviral helicase SKI2 99.0 2.8E-08 9.7E-13 125.4 24.2 87 683-789 334-453 (997)
21 3iuy_A Probable ATP-dependent 98.7 4.6E-08 1.6E-12 102.1 10.3 42 18-63 42-83 (228)
22 2pl3_A Probable ATP-dependent 98.7 7.3E-08 2.5E-12 101.1 11.1 42 18-63 47-88 (236)
23 1qde_A EIF4A, translation init 98.6 5.2E-08 1.8E-12 101.3 9.5 44 15-62 32-76 (224)
24 3dkp_A Probable ATP-dependent 98.6 4.9E-08 1.7E-12 103.1 7.7 43 16-62 48-91 (245)
25 1wrb_A DJVLGB; RNA helicase, D 98.6 1.3E-07 4.3E-12 100.5 10.0 42 18-63 45-86 (253)
26 3ber_A Probable ATP-dependent 98.5 3E-07 1E-11 97.6 11.5 43 16-62 62-105 (249)
27 3tbk_A RIG-I helicase domain; 98.3 7.2E-07 2.5E-11 105.0 9.6 99 670-789 373-481 (555)
28 4a2p_A RIG-I, retinoic acid in 98.3 1.3E-06 4.5E-11 103.0 9.6 99 670-789 374-482 (556)
29 2ykg_A Probable ATP-dependent 98.1 9.3E-06 3.2E-10 98.8 11.3 99 670-789 382-490 (696)
30 1wp9_A ATP-dependent RNA helic 98.0 6.5E-06 2.2E-10 94.4 8.0 93 670-788 345-447 (494)
31 4a2q_A RIG-I, retinoic acid in 98.0 1.1E-05 3.9E-10 99.9 9.2 99 670-789 615-723 (797)
32 4a2w_A RIG-I, retinoic acid in 97.8 1.7E-05 5.9E-10 99.8 7.7 99 670-789 615-723 (936)
33 1oyw_A RECQ helicase, ATP-depe 97.7 0.00039 1.3E-08 81.8 16.5 79 685-789 236-315 (523)
34 2hjv_A ATP-dependent RNA helic 97.7 0.00036 1.2E-08 68.6 13.7 80 684-789 34-114 (163)
35 2v1x_A ATP-dependent DNA helic 97.7 0.00044 1.5E-08 82.5 16.8 79 685-789 267-346 (591)
36 2rb4_A ATP-dependent RNA helic 97.7 0.00027 9.3E-09 70.3 12.7 88 677-790 25-114 (175)
37 3fho_A ATP-dependent RNA helic 97.7 7.9E-05 2.7E-09 87.4 10.1 122 677-878 348-471 (508)
38 1vec_A ATP-dependent RNA helic 97.7 3.8E-05 1.3E-09 78.2 6.1 44 15-62 21-65 (206)
39 1fuk_A Eukaryotic initiation f 97.6 0.00016 5.6E-09 71.2 10.1 80 684-789 29-109 (165)
40 2p6n_A ATP-dependent RNA helic 97.6 0.00015 5E-09 73.7 10.0 87 677-789 46-133 (191)
41 3fe2_A Probable ATP-dependent 97.6 4E-05 1.4E-09 80.6 5.8 44 16-63 48-92 (242)
42 2oxc_A Probable ATP-dependent 97.5 7.3E-05 2.5E-09 77.9 5.8 43 16-62 43-86 (230)
43 2jgn_A DBX, DDX3, ATP-dependen 97.5 0.00045 1.6E-08 69.6 11.3 79 685-789 46-125 (185)
44 1t6n_A Probable ATP-dependent 97.5 8.2E-05 2.8E-09 76.7 5.8 44 15-62 32-76 (220)
45 1wp9_A ATP-dependent RNA helic 97.5 0.00068 2.3E-08 77.4 13.8 40 17-61 8-47 (494)
46 2gxq_A Heat resistant RNA depe 97.5 8.6E-05 2.9E-09 75.5 5.3 42 18-63 23-64 (207)
47 1q0u_A Bstdead; DEAD protein, 97.5 6E-05 2.1E-09 77.8 4.2 42 18-63 26-67 (219)
48 3b6e_A Interferon-induced heli 97.5 0.0001 3.5E-09 75.3 5.7 48 13-64 28-75 (216)
49 3bor_A Human initiation factor 97.4 6.1E-05 2.1E-09 78.9 3.9 43 16-62 49-92 (237)
50 3ly5_A ATP-dependent RNA helic 97.4 0.00013 4.4E-09 77.8 6.2 42 19-64 77-118 (262)
51 1t5i_A C_terminal domain of A 97.4 0.00042 1.4E-08 68.9 9.5 80 684-789 30-110 (172)
52 3fmo_B ATP-dependent RNA helic 97.4 0.00011 3.9E-09 80.0 5.3 41 18-62 114-156 (300)
53 2va8_A SSO2462, SKI2-type heli 97.3 0.0029 1E-07 77.1 17.8 45 14-61 25-70 (715)
54 3eaq_A Heat resistant RNA depe 97.3 0.0013 4.4E-08 67.8 11.6 80 684-789 30-110 (212)
55 1gm5_A RECG; helicase, replica 97.2 0.00032 1.1E-08 86.0 6.8 50 14-63 364-415 (780)
56 2yjt_D ATP-dependent RNA helic 96.2 7.8E-05 2.7E-09 74.0 0.0 79 685-789 30-109 (170)
57 2jlq_A Serine protease subunit 97.1 0.00041 1.4E-08 80.0 6.1 77 684-790 187-263 (451)
58 2v1x_A ATP-dependent DNA helic 97.0 0.00044 1.5E-08 82.5 4.9 41 15-59 40-81 (591)
59 2eyq_A TRCF, transcription-rep 97.0 0.00072 2.5E-08 86.7 7.1 48 14-61 599-648 (1151)
60 3i32_A Heat resistant RNA depe 96.9 0.0096 3.3E-07 64.7 14.7 79 685-789 28-107 (300)
61 3fmp_B ATP-dependent RNA helic 96.9 0.00041 1.4E-08 80.4 3.8 80 685-789 333-412 (479)
62 2v6i_A RNA helicase; membrane, 96.8 0.0044 1.5E-07 70.9 11.2 77 684-790 170-246 (431)
63 4gl2_A Interferon-induced heli 96.7 0.0011 3.6E-08 80.7 5.8 96 674-789 387-493 (699)
64 3fmp_B ATP-dependent RNA helic 96.7 0.00037 1.3E-08 80.8 1.6 40 19-60 115-154 (479)
65 2p6r_A Afuhel308 helicase; pro 96.7 0.0062 2.1E-07 74.1 12.4 43 14-60 20-63 (702)
66 1oyw_A RECQ helicase, ATP-depe 96.7 0.00073 2.5E-08 79.4 3.6 41 15-59 21-62 (523)
67 2fz4_A DNA repair protein RAD2 96.6 0.0018 6.3E-08 67.8 5.6 41 14-58 89-129 (237)
68 4ddu_A Reverse gyrase; topoiso 96.5 0.0016 5.4E-08 83.1 5.7 44 15-62 75-118 (1104)
69 2xau_A PRE-mRNA-splicing facto 96.5 0.004 1.4E-07 76.5 9.0 107 667-789 284-398 (773)
70 1rif_A DAR protein, DNA helica 96.5 0.0014 4.9E-08 70.3 4.0 42 17-62 112-153 (282)
71 3h1t_A Type I site-specific re 96.4 0.011 3.6E-07 70.4 11.6 103 671-789 423-528 (590)
72 2fwr_A DNA repair protein RAD2 96.4 0.0024 8.1E-08 73.7 5.8 75 684-788 348-422 (472)
73 2oca_A DAR protein, ATP-depend 96.4 0.0021 7.3E-08 74.9 5.4 91 673-789 336-427 (510)
74 4f92_B U5 small nuclear ribonu 96.3 0.025 8.5E-07 75.1 15.1 46 15-63 74-121 (1724)
75 1tf5_A Preprotein translocase 96.3 0.0026 8.8E-08 77.4 5.2 37 17-59 82-118 (844)
76 3llm_A ATP-dependent RNA helic 96.3 0.0026 9E-08 66.3 4.7 42 16-61 59-100 (235)
77 3h1t_A Type I site-specific re 96.3 0.0037 1.3E-07 74.4 6.4 39 18-56 178-217 (590)
78 2zj8_A DNA helicase, putative 96.3 0.014 4.7E-07 71.2 11.6 44 15-61 19-63 (720)
79 4gl2_A Interferon-induced heli 96.2 0.0062 2.1E-07 73.8 8.3 45 16-64 5-49 (699)
80 2oca_A DAR protein, ATP-depend 96.2 0.022 7.6E-07 66.2 12.2 41 16-60 111-151 (510)
81 2p6r_A Afuhel308 helicase; pro 96.0 0.0021 7.2E-08 78.3 2.7 15 32-46 63-77 (702)
82 2va8_A SSO2462, SKI2-type heli 96.0 0.0037 1.3E-07 76.2 4.9 20 686-705 253-272 (715)
83 2zj8_A DNA helicase, putative 96.0 0.0032 1.1E-07 77.0 4.2 16 377-392 331-346 (720)
84 2fwr_A DNA repair protein RAD2 96.0 0.0084 2.9E-07 69.0 7.5 42 13-58 88-129 (472)
85 2wv9_A Flavivirin protease NS2 96.0 0.042 1.5E-06 66.3 13.6 77 684-790 409-485 (673)
86 2d7d_A Uvrabc system protein B 95.9 0.035 1.2E-06 67.0 12.5 79 685-789 445-524 (661)
87 3fho_A ATP-dependent RNA helic 95.8 0.002 6.8E-08 75.4 1.1 42 19-62 142-183 (508)
88 1gku_B Reverse gyrase, TOP-RG; 95.7 0.0071 2.4E-07 76.9 5.6 43 15-63 54-96 (1054)
89 1nkt_A Preprotein translocase 95.7 0.0055 1.9E-07 74.7 4.2 37 17-59 110-146 (922)
90 2fsf_A Preprotein translocase 95.7 0.0064 2.2E-07 73.9 4.7 38 17-60 73-110 (853)
91 3tbk_A RIG-I helicase domain; 95.6 0.02 6.8E-07 66.8 8.7 43 16-62 2-44 (555)
92 1c4o_A DNA nucleotide excision 95.6 0.051 1.7E-06 65.6 12.1 79 684-788 438-517 (664)
93 2eyq_A TRCF, transcription-rep 95.5 0.075 2.6E-06 68.1 14.1 78 685-786 812-890 (1151)
94 2z83_A Helicase/nucleoside tri 95.5 0.0068 2.3E-07 69.9 4.0 78 684-791 189-266 (459)
95 2whx_A Serine protease/ntpase/ 95.2 0.022 7.5E-07 68.1 7.2 77 684-790 354-430 (618)
96 4a2p_A RIG-I, retinoic acid in 95.2 0.05 1.7E-06 63.5 9.9 44 15-62 4-47 (556)
97 3rc3_A ATP-dependent RNA helic 95.1 0.054 1.9E-06 65.3 10.3 122 684-876 319-443 (677)
98 2ipc_A Preprotein translocase 95.1 0.012 4.1E-07 71.7 4.4 37 17-59 78-114 (997)
99 1z5z_A Helicase of the SNF2/RA 95.1 0.13 4.3E-06 54.9 11.9 95 671-790 99-195 (271)
100 1z63_A Helicase of the SNF2/RA 95.0 0.1 3.4E-06 60.4 12.0 94 671-789 328-423 (500)
101 2wv9_A Flavivirin protease NS2 94.6 0.0024 8.1E-08 77.2 -3.4 46 18-63 215-267 (673)
102 1z63_A Helicase of the SNF2/RA 94.5 0.045 1.6E-06 63.3 7.2 43 14-56 33-75 (500)
103 1gku_B Reverse gyrase, TOP-RG; 94.5 0.076 2.6E-06 67.5 9.7 82 679-788 269-352 (1054)
104 2whx_A Serine protease/ntpase/ 94.4 0.0057 2E-07 73.2 -0.9 41 19-63 172-212 (618)
105 4a2q_A RIG-I, retinoic acid in 94.3 0.11 3.9E-06 64.0 10.5 42 16-61 246-287 (797)
106 4f92_B U5 small nuclear ribonu 94.3 0.035 1.2E-06 73.8 6.2 43 19-64 927-969 (1724)
107 2ykg_A Probable ATP-dependent 94.3 0.064 2.2E-06 64.8 8.2 44 15-62 9-53 (696)
108 4a2w_A RIG-I, retinoic acid in 94.2 0.1 3.4E-06 65.6 9.8 41 16-60 246-286 (936)
109 4ddu_A Reverse gyrase; topoiso 94.2 0.28 9.4E-06 62.6 13.8 77 684-789 308-388 (1104)
110 1yks_A Genome polyprotein [con 94.0 0.064 2.2E-06 61.4 7.0 75 685-789 177-251 (440)
111 1yks_A Genome polyprotein [con 94.0 0.014 4.7E-07 67.0 1.3 31 33-63 4-34 (440)
112 2z83_A Helicase/nucleoside tri 93.8 0.018 6.2E-07 66.3 1.9 33 31-63 15-47 (459)
113 1gm5_A RECG; helicase, replica 93.8 0.077 2.7E-06 65.0 7.5 81 685-788 578-667 (780)
114 1z3i_X Similar to RAD54-like; 93.6 0.38 1.3E-05 57.7 13.0 81 684-789 415-498 (644)
115 3mwy_W Chromo domain-containin 93.6 0.15 5.3E-06 62.8 9.7 83 684-789 571-654 (800)
116 3dmq_A RNA polymerase-associat 93.2 0.14 4.9E-06 64.4 8.8 83 683-789 501-585 (968)
117 2w00_A HSDR, R.ECOR124I; ATP-b 93.1 0.051 1.7E-06 68.6 4.4 45 17-62 270-324 (1038)
118 3upu_A ATP-dependent DNA helic 92.9 0.12 4.1E-06 59.4 6.9 49 15-64 21-71 (459)
119 2v6i_A RNA helicase; membrane, 92.0 0.065 2.2E-06 61.1 3.0 27 36-62 1-27 (431)
120 2jlq_A Serine protease subunit 91.9 0.054 1.8E-06 62.2 2.2 40 19-63 5-45 (451)
121 3n70_A Transport activator; si 88.9 0.25 8.6E-06 47.0 3.6 28 26-53 9-40 (145)
122 3dmq_A RNA polymerase-associat 88.6 0.45 1.6E-05 59.8 6.7 48 13-62 148-195 (968)
123 3o8b_A HCV NS3 protease/helica 87.9 0.049 1.7E-06 65.2 -2.6 72 684-788 395-466 (666)
124 3o8b_A HCV NS3 protease/helica 87.4 1.3 4.6E-05 52.9 9.3 22 853-876 492-513 (666)
125 1jbk_A CLPB protein; beta barr 87.3 0.43 1.5E-05 46.4 4.2 38 17-54 21-60 (195)
126 2r44_A Uncharacterized protein 87.2 0.2 7E-06 54.5 2.0 34 19-52 28-61 (331)
127 2w00_A HSDR, R.ECOR124I; ATP-b 86.7 2 7E-05 54.1 10.9 42 667-708 510-560 (1038)
128 2w58_A DNAI, primosome compone 86.7 0.56 1.9E-05 46.8 4.8 32 22-53 33-70 (202)
129 3rc3_A ATP-dependent RNA helic 86.5 0.24 8.2E-06 59.7 2.2 17 36-52 154-170 (677)
130 3co5_A Putative two-component 86.2 0.39 1.3E-05 45.5 3.2 20 33-52 23-42 (143)
131 1a5t_A Delta prime, HOLB; zinc 86.1 0.61 2.1E-05 51.0 5.1 37 19-55 3-42 (334)
132 1z3i_X Similar to RAD54-like; 86.1 0.72 2.5E-05 55.3 6.2 46 16-61 53-103 (644)
133 3nbx_X ATPase RAVA; AAA+ ATPas 86.1 0.33 1.1E-05 56.3 3.1 31 22-52 26-56 (500)
134 3jux_A Protein translocase sub 86.1 0.53 1.8E-05 56.5 4.7 140 590-775 399-539 (822)
135 2p65_A Hypothetical protein PF 85.8 0.46 1.6E-05 46.1 3.6 36 18-53 22-59 (187)
136 1w36_D RECD, exodeoxyribonucle 85.0 0.55 1.9E-05 55.9 4.3 37 20-60 151-189 (608)
137 3mwy_W Chromo domain-containin 84.4 1.2 4E-05 54.9 7.0 41 18-58 236-276 (800)
138 3b6e_A Interferon-induced heli 84.4 0.24 8.1E-06 49.8 0.7 39 358-396 132-175 (216)
139 3jux_A Protein translocase sub 83.8 11 0.00038 45.4 14.5 37 17-59 74-110 (822)
140 2xau_A PRE-mRNA-splicing facto 83.8 0.65 2.2E-05 56.9 4.3 30 28-59 100-129 (773)
141 3hws_A ATP-dependent CLP prote 83.6 0.59 2E-05 51.6 3.6 30 23-52 20-66 (363)
142 3h4m_A Proteasome-activating n 83.0 0.61 2.1E-05 49.3 3.3 42 12-53 11-67 (285)
143 2bjv_A PSP operon transcriptio 82.4 0.45 1.5E-05 49.9 1.9 31 22-52 10-44 (265)
144 3ec2_A DNA replication protein 82.4 1.8 6.2E-05 42.2 6.2 33 20-52 16-53 (180)
145 1njg_A DNA polymerase III subu 82.4 0.55 1.9E-05 47.4 2.5 34 20-53 25-61 (250)
146 3te6_A Regulatory protein SIR3 80.9 0.94 3.2E-05 49.3 3.8 30 25-54 31-62 (318)
147 2gxq_A Heat resistant RNA depe 80.7 0.48 1.6E-05 47.3 1.3 38 358-397 120-158 (207)
148 1ofh_A ATP-dependent HSL prote 80.4 1.1 3.8E-05 47.6 4.1 31 23-53 20-66 (310)
149 4b3f_X DNA-binding protein smu 80.2 1.3 4.5E-05 53.0 5.1 53 755-807 569-631 (646)
150 4fcw_A Chaperone protein CLPB; 80.1 0.79 2.7E-05 49.0 2.9 33 22-54 21-64 (311)
151 2chg_A Replication factor C sm 80.1 0.81 2.8E-05 45.5 2.8 32 22-53 21-54 (226)
152 1iqp_A RFCS; clamp loader, ext 78.9 1.3 4.3E-05 47.5 4.0 35 20-54 27-63 (327)
153 1g8p_A Magnesium-chelatase 38 78.9 0.82 2.8E-05 49.7 2.5 40 13-52 19-60 (350)
154 1vec_A ATP-dependent RNA helic 78.8 0.39 1.3E-05 48.0 -0.2 39 357-397 121-160 (206)
155 2qen_A Walker-type ATPase; unk 78.7 0.92 3.1E-05 49.0 2.8 30 24-53 18-47 (350)
156 3cf0_A Transitional endoplasmi 78.3 1.1 3.7E-05 48.1 3.2 42 12-53 9-65 (301)
157 3b9p_A CG5977-PA, isoform A; A 78.2 1.2 4.2E-05 47.3 3.6 40 15-54 18-71 (297)
158 1sxj_D Activator 1 41 kDa subu 78.0 0.74 2.5E-05 50.1 1.8 35 20-54 39-75 (353)
159 2qgz_A Helicase loader, putati 77.9 2.1 7E-05 46.3 5.3 32 22-53 132-168 (308)
160 1sxj_C Activator 1 40 kDa subu 77.7 1.6 5.5E-05 47.5 4.5 34 22-55 29-64 (340)
161 1hqc_A RUVB; extended AAA-ATPa 76.7 1.5 5.2E-05 47.0 3.8 34 20-53 14-54 (324)
162 3pxg_A Negative regulator of g 76.6 1.2 4.1E-05 51.2 3.1 37 17-53 179-217 (468)
163 1q0u_A Bstdead; DEAD protein, 76.1 0.81 2.8E-05 46.3 1.4 38 358-397 126-164 (219)
164 2r62_A Cell division protease 76.1 1.1 3.9E-05 46.7 2.6 17 37-53 44-60 (268)
165 3pfi_A Holliday junction ATP-d 76.1 0.91 3.1E-05 49.3 1.9 35 19-53 30-71 (338)
166 2v1u_A Cell division control p 75.3 1.3 4.5E-05 48.5 2.9 36 18-53 19-60 (387)
167 1lv7_A FTSH; alpha/beta domain 74.5 3.1 0.0001 43.1 5.4 34 19-52 16-60 (257)
168 3eie_A Vacuolar protein sortin 74.5 1.5 5E-05 47.6 2.9 43 11-53 11-67 (322)
169 3bos_A Putative DNA replicatio 74.3 2.9 9.9E-05 42.2 5.0 31 23-53 36-68 (242)
170 2gk6_A Regulator of nonsense t 73.9 3.4 0.00012 49.1 6.2 34 19-56 181-214 (624)
171 2qz4_A Paraplegin; AAA+, SPG7, 73.2 3.7 0.00013 42.4 5.6 35 19-53 10-55 (262)
172 1rif_A DAR protein, DNA helica 72.9 0.88 3E-05 48.2 0.7 38 356-397 202-239 (282)
173 3fe2_A Probable ATP-dependent 72.8 0.9 3.1E-05 46.9 0.7 38 358-397 152-190 (242)
174 3pxi_A Negative regulator of g 72.7 1.6 5.6E-05 53.2 3.1 36 17-52 179-216 (758)
175 3uk6_A RUVB-like 2; hexameric 72.5 3.2 0.00011 45.3 5.2 34 20-53 49-86 (368)
176 1jr3_A DNA polymerase III subu 71.8 2.4 8.4E-05 46.3 4.0 36 19-54 17-55 (373)
177 2oxc_A Probable ATP-dependent 71.7 0.7 2.4E-05 47.3 -0.4 39 357-397 141-180 (230)
178 1ojl_A Transcriptional regulat 71.6 2.1 7.1E-05 46.1 3.3 28 26-53 10-41 (304)
179 1t6n_A Probable ATP-dependent 71.6 0.8 2.7E-05 46.3 -0.0 37 359-397 135-172 (220)
180 1fnn_A CDC6P, cell division co 71.3 2.6 8.9E-05 46.2 4.1 37 18-54 17-61 (389)
181 3bor_A Human initiation factor 71.0 1 3.6E-05 46.2 0.7 37 359-397 150-187 (237)
182 3pvs_A Replication-associated 70.9 2.2 7.4E-05 48.7 3.4 35 19-53 27-66 (447)
183 2fz4_A DNA repair protein RAD2 70.2 1.8 6E-05 44.8 2.2 36 358-397 171-206 (237)
184 1l8q_A Chromosomal replication 70.2 3.5 0.00012 44.4 4.7 32 22-53 18-53 (324)
185 3pxi_A Negative regulator of g 69.8 1.7 5.8E-05 53.1 2.3 30 23-52 496-536 (758)
186 2chq_A Replication factor C sm 69.7 1.9 6.5E-05 45.9 2.4 34 20-53 19-54 (319)
187 3vfd_A Spastin; ATPase, microt 69.2 2.8 9.6E-05 46.6 3.8 39 15-53 112-164 (389)
188 3d8b_A Fidgetin-like protein 1 68.8 2.8 9.6E-05 46.1 3.7 37 17-53 83-133 (357)
189 2c9o_A RUVB-like 1; hexameric 68.4 4.7 0.00016 45.9 5.5 31 23-53 45-79 (456)
190 3ly5_A ATP-dependent RNA helic 68.3 1.4 4.9E-05 46.1 1.0 39 358-397 176-215 (262)
191 2qby_B CDC6 homolog 3, cell di 68.1 3.2 0.00011 45.5 3.9 33 22-54 24-62 (384)
192 3syl_A Protein CBBX; photosynt 68.1 4.3 0.00015 43.1 4.8 16 38-53 68-83 (309)
193 3e1s_A Exodeoxyribonuclease V, 66.9 5.6 0.00019 46.8 5.8 35 15-53 186-220 (574)
194 3u61_B DNA polymerase accessor 66.8 3.7 0.00013 44.1 4.0 35 20-54 28-65 (324)
195 3k1j_A LON protease, ATP-depen 66.1 3.9 0.00013 48.4 4.4 33 22-54 45-77 (604)
196 1c4o_A DNA nucleotide excision 65.8 4.9 0.00017 48.2 5.2 42 14-55 4-46 (664)
197 3t15_A Ribulose bisphosphate c 63.7 3.5 0.00012 44.0 3.0 21 38-60 37-57 (293)
198 2qmh_A HPR kinase/phosphorylas 63.3 3.2 0.00011 41.9 2.4 18 37-54 34-52 (205)
199 1d2n_A N-ethylmaleimide-sensit 63.3 3 0.0001 43.7 2.3 24 30-53 52-80 (272)
200 1um8_A ATP-dependent CLP prote 63.2 5.2 0.00018 44.1 4.4 17 37-53 72-88 (376)
201 2xzl_A ATP-dependent helicase 62.8 7.2 0.00025 47.8 5.9 35 19-57 361-395 (802)
202 2qp9_X Vacuolar protein sortin 62.6 3.1 0.0001 45.8 2.4 39 15-53 48-100 (355)
203 2wjy_A Regulator of nonsense t 62.4 5.5 0.00019 48.8 4.8 34 19-56 357-390 (800)
204 1r6b_X CLPA protein; AAA+, N-t 62.2 2.5 8.7E-05 51.4 1.8 32 22-53 462-504 (758)
205 2qby_A CDC6 homolog 1, cell di 62.0 3.5 0.00012 44.9 2.7 37 18-54 20-62 (386)
206 1ixz_A ATP-dependent metallopr 61.6 11 0.00036 38.9 6.2 35 19-53 20-65 (254)
207 1qvr_A CLPB protein; coiled co 61.2 2.8 9.6E-05 51.9 1.9 30 23-52 563-603 (854)
208 2zan_A Vacuolar protein sortin 60.8 4.9 0.00017 45.6 3.7 40 14-53 130-183 (444)
209 2gza_A Type IV secretion syste 60.6 5.4 0.00019 44.0 3.9 25 28-52 166-190 (361)
210 1sxj_A Activator 1 95 kDa subu 60.6 5.7 0.0002 46.0 4.3 33 22-54 43-94 (516)
211 1sxj_B Activator 1 37 kDa subu 59.5 4.5 0.00015 43.0 3.0 32 22-53 25-58 (323)
212 4akg_A Glutathione S-transfera 59.3 6.5 0.00022 54.3 5.0 38 17-54 903-940 (2695)
213 2oap_1 GSPE-2, type II secreti 59.1 5.8 0.0002 46.0 4.0 28 26-53 249-276 (511)
214 1in4_A RUVB, holliday junction 59.0 5.2 0.00018 43.4 3.4 31 23-53 30-67 (334)
215 1tue_A Replication protein E1; 58.6 7.8 0.00027 39.3 4.3 29 26-54 44-75 (212)
216 2d7d_A Uvrabc system protein B 58.3 6.8 0.00023 46.9 4.5 42 13-54 7-49 (661)
217 1xwi_A SKD1 protein; VPS4B, AA 58.0 5.6 0.00019 43.0 3.4 16 38-53 46-61 (322)
218 4b4t_L 26S protease subunit RP 57.7 5.6 0.00019 45.1 3.4 46 13-60 176-236 (437)
219 1ry6_A Internal kinesin; kines 57.4 5.6 0.00019 43.9 3.3 39 17-55 58-103 (360)
220 2gno_A DNA polymerase III, gam 57.3 6.4 0.00022 42.3 3.7 33 23-55 2-36 (305)
221 2b8t_A Thymidine kinase; deoxy 57.1 5.8 0.0002 40.7 3.2 33 31-63 6-38 (223)
222 3vkg_A Dynein heavy chain, cyt 56.7 7.4 0.00025 54.4 4.9 43 19-62 1286-1328(3245)
223 4b4t_M 26S protease regulatory 56.5 3.7 0.00013 46.5 1.7 40 19-60 185-236 (434)
224 2kjq_A DNAA-related protein; s 56.4 6 0.0002 37.6 2.9 17 36-52 35-51 (149)
225 4akg_A Glutathione S-transfera 56.2 6.8 0.00023 54.1 4.4 35 19-53 1249-1283(2695)
226 4b4t_J 26S protease regulatory 56.0 4 0.00014 45.8 1.8 40 19-60 152-203 (405)
227 3f9v_A Minichromosome maintena 54.7 3.5 0.00012 48.7 1.2 30 23-52 300-342 (595)
228 3hu3_A Transitional endoplasmi 54.7 7.8 0.00027 44.6 4.0 38 16-53 202-254 (489)
229 1u0j_A DNA replication protein 54.5 11 0.00038 39.7 4.8 30 26-55 89-122 (267)
230 1tf5_A Preprotein translocase 53.2 1.1E+02 0.0039 37.2 13.9 93 670-788 418-516 (844)
231 4b4t_K 26S protease regulatory 52.7 4.7 0.00016 45.6 1.7 40 19-60 176-227 (428)
232 1iy2_A ATP-dependent metallopr 52.6 15 0.00051 38.4 5.6 35 19-53 44-89 (278)
233 2pt7_A CAG-ALFA; ATPase, prote 52.0 8.7 0.0003 41.8 3.7 27 26-52 160-186 (330)
234 1r6b_X CLPA protein; AAA+, N-t 51.1 9.1 0.00031 46.5 4.1 36 18-53 186-223 (758)
235 1qvr_A CLPB protein; coiled co 51.0 8.2 0.00028 47.7 3.7 36 17-52 169-206 (854)
236 2j41_A Guanylate kinase; GMP, 50.3 5.3 0.00018 39.4 1.5 18 34-51 3-20 (207)
237 3fmo_B ATP-dependent RNA helic 50.3 3 0.0001 44.7 -0.4 41 356-397 208-249 (300)
238 4b4t_H 26S protease regulatory 50.0 5.2 0.00018 45.6 1.5 40 19-60 213-264 (467)
239 2ce7_A Cell division protein F 49.7 16 0.00054 41.9 5.5 35 19-53 20-65 (476)
240 2r2a_A Uncharacterized protein 49.7 4.8 0.00016 40.5 1.0 14 383-396 87-100 (199)
241 3tr0_A Guanylate kinase, GMP k 49.5 5.5 0.00019 39.3 1.5 19 34-52 4-22 (205)
242 2bwj_A Adenylate kinase 5; pho 49.3 5.5 0.00019 39.1 1.4 26 27-52 2-27 (199)
243 1g41_A Heat shock protein HSLU 49.3 8.2 0.00028 43.8 3.0 16 37-52 50-65 (444)
244 4b4t_I 26S protease regulatory 48.7 5.9 0.0002 44.7 1.7 40 19-60 186-237 (437)
245 2fsf_A Preprotein translocase 47.9 80 0.0027 38.5 11.4 140 591-776 367-507 (853)
246 3tau_A Guanylate kinase, GMP k 47.7 6.6 0.00023 39.3 1.8 18 35-52 6-23 (208)
247 3vaa_A Shikimate kinase, SK; s 46.9 7 0.00024 38.7 1.8 20 33-52 21-40 (199)
248 1p9r_A General secretion pathw 46.9 9.4 0.00032 43.0 3.0 30 22-53 154-183 (418)
249 1kgd_A CASK, peripheral plasma 46.6 7.2 0.00025 38.0 1.8 17 36-52 4-20 (180)
250 3a8t_A Adenylate isopentenyltr 46.0 6.1 0.00021 43.2 1.2 16 37-52 40-55 (339)
251 2fna_A Conserved hypothetical 45.7 7 0.00024 41.9 1.7 27 25-53 20-46 (357)
252 3exa_A TRNA delta(2)-isopenten 45.5 6.4 0.00022 42.6 1.3 16 37-52 3-18 (322)
253 3llm_A ATP-dependent RNA helic 45.5 9.6 0.00033 38.8 2.6 34 357-394 154-187 (235)
254 1xx6_A Thymidine kinase; NESG, 45.4 11 0.00038 37.5 3.0 28 35-62 6-33 (191)
255 2z4s_A Chromosomal replication 45.3 15 0.00053 41.4 4.5 31 23-53 113-146 (440)
256 3vkg_A Dynein heavy chain, cyt 45.2 15 0.00053 51.3 5.2 46 17-62 886-933 (3245)
257 4a14_A Kinesin, kinesin-like p 44.9 12 0.00043 40.8 3.5 40 15-54 56-101 (344)
258 1kht_A Adenylate kinase; phosp 44.9 7.7 0.00026 37.6 1.7 17 36-52 2-18 (192)
259 3b85_A Phosphate starvation-in 44.8 15 0.00053 36.9 4.0 24 30-53 15-38 (208)
260 3lw7_A Adenylate kinase relate 43.5 8 0.00027 36.6 1.5 15 38-52 2-16 (179)
261 2orw_A Thymidine kinase; TMTK, 43.1 14 0.00048 36.3 3.3 26 36-61 2-27 (184)
262 3trf_A Shikimate kinase, SK; a 43.0 8.6 0.0003 37.2 1.7 16 37-52 5-20 (185)
263 2dr3_A UPF0273 protein PH0284; 42.9 9.8 0.00033 38.5 2.2 29 33-61 19-47 (247)
264 3ney_A 55 kDa erythrocyte memb 42.7 9 0.00031 38.5 1.8 18 35-52 17-34 (197)
265 2dhr_A FTSH; AAA+ protein, hex 42.5 24 0.00083 40.6 5.6 35 19-53 35-80 (499)
266 2w0m_A SSO2452; RECA, SSPF, un 42.2 12 0.00042 37.3 2.8 30 28-57 13-43 (235)
267 3lre_A Kinesin-like protein KI 41.9 12 0.00042 41.0 2.9 43 13-55 76-124 (355)
268 1sxj_E Activator 1 40 kDa subu 41.9 9.4 0.00032 41.3 1.9 33 22-54 18-53 (354)
269 1n0w_A DNA repair protein RAD5 41.0 10 0.00035 38.3 2.0 27 33-59 20-46 (243)
270 1w5s_A Origin recognition comp 40.4 11 0.00037 41.5 2.2 33 22-54 29-69 (412)
271 3cpe_A Terminase, DNA packagin 40.3 23 0.00078 41.7 5.1 42 15-61 160-201 (592)
272 2cvh_A DNA repair and recombin 40.2 9.2 0.00031 38.0 1.4 23 33-55 16-38 (220)
273 1z6g_A Guanylate kinase; struc 39.6 11 0.00037 38.1 1.9 20 33-52 19-38 (218)
274 2y65_A Kinesin, kinesin heavy 39.6 17 0.00057 40.1 3.5 39 16-54 58-102 (365)
275 1gvn_B Zeta; postsegregational 39.6 15 0.00051 39.0 3.0 36 16-52 6-48 (287)
276 2eyu_A Twitching motility prot 39.5 9.1 0.00031 40.1 1.3 19 34-52 22-40 (261)
277 2c95_A Adenylate kinase 1; tra 39.0 12 0.00042 36.3 2.1 19 34-52 6-24 (196)
278 1bg2_A Kinesin; motor protein, 39.0 16 0.00054 39.6 3.2 39 17-55 52-96 (325)
279 2qor_A Guanylate kinase; phosp 38.7 11 0.00039 37.3 1.8 19 34-52 9-27 (204)
280 1x88_A Kinesin-like protein KI 38.6 14 0.00048 40.6 2.7 39 17-55 63-107 (359)
281 2h58_A Kinesin-like protein KI 38.6 12 0.00041 40.7 2.1 39 17-55 56-99 (330)
282 1ypw_A Transitional endoplasmi 38.4 13 0.00043 45.7 2.5 18 35-52 236-253 (806)
283 3iij_A Coilin-interacting nucl 38.3 9.8 0.00033 36.8 1.2 17 36-52 10-26 (180)
284 1t5c_A CENP-E protein, centrom 38.3 17 0.00059 39.8 3.3 39 17-55 52-96 (349)
285 3cm0_A Adenylate kinase; ATP-b 38.0 8.5 0.00029 37.3 0.7 18 35-52 2-19 (186)
286 3dc4_A Kinesin-like protein NO 37.9 15 0.0005 40.3 2.6 38 17-54 69-112 (344)
287 2ehv_A Hypothetical protein PH 37.6 14 0.00048 37.4 2.4 26 33-58 26-51 (251)
288 2zts_A Putative uncharacterize 37.5 17 0.00056 36.8 2.9 23 33-55 26-48 (251)
289 3lnc_A Guanylate kinase, GMP k 37.5 8.3 0.00028 39.1 0.6 19 34-52 24-42 (231)
290 2v54_A DTMP kinase, thymidylat 37.5 9.2 0.00032 37.6 0.9 17 36-52 3-19 (204)
291 1goj_A Kinesin, kinesin heavy 37.4 16 0.00055 40.1 2.9 39 17-55 55-99 (355)
292 1lvg_A Guanylate kinase, GMP k 37.3 11 0.00039 37.3 1.6 17 36-52 3-19 (198)
293 3bfn_A Kinesin-like protein KI 36.9 15 0.00051 40.9 2.5 39 17-55 73-117 (388)
294 3m6a_A ATP-dependent protease 36.8 16 0.00055 42.5 3.0 18 37-54 108-125 (543)
295 3gbj_A KIF13B protein; kinesin 36.8 15 0.00051 40.4 2.5 37 18-54 68-110 (354)
296 3lfu_A DNA helicase II; SF1 he 36.2 20 0.00069 42.3 3.8 36 19-60 10-45 (647)
297 2o0j_A Terminase, DNA packagin 36.1 29 0.001 38.5 4.8 40 15-58 160-199 (385)
298 3foz_A TRNA delta(2)-isopenten 35.7 11 0.00037 40.7 1.2 15 38-52 11-25 (316)
299 3jvv_A Twitching mobility prot 35.6 21 0.00072 39.2 3.5 30 33-63 119-148 (356)
300 3v9p_A DTMP kinase, thymidylat 35.2 12 0.00042 38.3 1.4 19 34-52 22-40 (227)
301 3kb2_A SPBC2 prophage-derived 34.4 14 0.00047 35.0 1.6 14 39-52 3-16 (173)
302 2heh_A KIF2C protein; kinesin, 34.4 22 0.00077 39.4 3.4 40 17-56 109-154 (387)
303 1m7g_A Adenylylsulfate kinase; 34.0 15 0.00053 36.5 1.9 21 32-52 20-40 (211)
304 1v8k_A Kinesin-like protein KI 33.8 19 0.00064 40.4 2.7 40 16-55 128-173 (410)
305 2vvg_A Kinesin-2; motor protei 33.6 22 0.00074 39.0 3.2 37 18-54 65-107 (350)
306 2x8a_A Nuclear valosin-contain 33.3 19 0.00065 37.8 2.6 16 38-53 45-60 (274)
307 2plr_A DTMP kinase, probable t 33.3 12 0.00042 36.8 1.0 17 36-52 3-19 (213)
308 3b6u_A Kinesin-like protein KI 33.2 20 0.00068 39.6 2.8 38 18-55 77-120 (372)
309 1qhx_A CPT, protein (chloramph 33.0 15 0.00053 35.1 1.7 15 37-51 3-17 (178)
310 1zp6_A Hypothetical protein AT 33.0 9.1 0.00031 37.3 -0.0 20 33-52 5-24 (191)
311 1zd8_A GTP:AMP phosphotransfer 33.0 13 0.00046 37.4 1.3 18 35-52 5-22 (227)
312 3bh0_A DNAB-like replicative h 32.9 18 0.00061 38.8 2.4 34 28-61 59-92 (315)
313 1s96_A Guanylate kinase, GMP k 32.6 16 0.00055 37.1 1.8 20 33-52 12-31 (219)
314 4tmk_A Protein (thymidylate ki 32.6 14 0.00049 37.3 1.4 17 36-52 2-18 (213)
315 2wbe_C Bipolar kinesin KRP-130 32.6 21 0.00072 39.5 2.8 38 18-55 76-119 (373)
316 2v9p_A Replication protein E1; 32.4 16 0.00056 39.2 1.9 27 26-52 115-141 (305)
317 1tev_A UMP-CMP kinase; ploop, 32.3 14 0.00047 35.8 1.2 16 37-52 3-18 (196)
318 3a00_A Guanylate kinase, GMP k 32.1 17 0.00058 35.4 1.8 16 37-52 1-16 (186)
319 4edh_A DTMP kinase, thymidylat 31.8 14 0.00049 37.3 1.3 18 35-52 4-21 (213)
320 3qf7_A RAD50; ABC-ATPase, ATPa 31.6 20 0.0007 39.3 2.6 22 39-62 25-46 (365)
321 3cob_A Kinesin heavy chain-lik 31.6 18 0.00063 39.9 2.2 38 17-54 55-97 (369)
322 1nkt_A Preprotein translocase 31.6 2E+02 0.0068 35.4 11.2 82 670-777 446-527 (922)
323 4gp7_A Metallophosphoesterase; 31.4 10 0.00036 36.5 0.1 21 34-54 6-26 (171)
324 2ewv_A Twitching motility prot 31.3 14 0.00048 40.8 1.2 19 34-52 133-151 (372)
325 2ze6_A Isopentenyl transferase 31.1 14 0.00047 38.3 1.0 14 39-52 3-16 (253)
326 1ypw_A Transitional endoplasmi 31.1 18 0.00063 44.2 2.3 24 36-61 510-533 (806)
327 1svm_A Large T antigen; AAA+ f 30.8 19 0.00064 39.9 2.1 26 27-52 159-184 (377)
328 2jaq_A Deoxyguanosine kinase; 30.8 17 0.00057 35.5 1.5 14 39-52 2-15 (205)
329 1e9r_A Conjugal transfer prote 30.7 20 0.00069 40.1 2.4 18 37-54 53-70 (437)
330 1uaa_A REP helicase, protein ( 30.6 32 0.0011 41.0 4.3 40 19-64 3-42 (673)
331 3crm_A TRNA delta(2)-isopenten 30.6 15 0.0005 39.9 1.2 15 38-52 6-20 (323)
332 1rz3_A Hypothetical protein rb 30.6 25 0.00087 34.7 2.9 28 25-52 5-37 (201)
333 1kag_A SKI, shikimate kinase I 30.5 19 0.00064 34.3 1.8 16 37-52 4-19 (173)
334 2ius_A DNA translocase FTSK; n 30.5 26 0.0009 40.4 3.3 28 35-62 165-192 (512)
335 2r2a_A Uncharacterized protein 30.5 24 0.00082 35.3 2.6 17 38-54 6-22 (199)
336 4eun_A Thermoresistant glucoki 30.4 18 0.00063 35.6 1.8 18 35-52 27-44 (200)
337 1zak_A Adenylate kinase; ATP:A 30.1 15 0.00053 36.8 1.2 17 36-52 4-20 (222)
338 3c8u_A Fructokinase; YP_612366 30.1 33 0.0011 33.9 3.7 27 26-52 7-37 (208)
339 2rhm_A Putative kinase; P-loop 30.0 15 0.0005 35.7 0.9 17 36-52 4-20 (193)
340 4a74_A DNA repair and recombin 29.8 15 0.00051 36.7 1.0 25 33-57 21-45 (231)
341 1cr0_A DNA primase/helicase; R 29.8 19 0.00066 37.8 1.9 32 27-58 25-56 (296)
342 2pez_A Bifunctional 3'-phospho 29.8 16 0.00056 35.1 1.3 17 36-52 4-20 (179)
343 1xjc_A MOBB protein homolog; s 29.7 33 0.0011 33.3 3.4 26 38-64 5-30 (169)
344 1ak2_A Adenylate kinase isoenz 29.5 19 0.00066 36.5 1.8 16 37-52 16-31 (233)
345 3tmk_A Thymidylate kinase; pho 29.4 18 0.0006 36.8 1.4 16 36-51 4-19 (216)
346 1aky_A Adenylate kinase; ATP:A 29.4 19 0.00067 35.9 1.8 17 36-52 3-19 (220)
347 1nlf_A Regulatory protein REPA 29.2 20 0.00068 37.5 1.8 27 33-59 26-52 (279)
348 1ly1_A Polynucleotide kinase; 29.0 18 0.00062 34.5 1.4 15 38-52 3-17 (181)
349 1y63_A LMAJ004144AAA protein; 29.0 20 0.00069 34.8 1.8 17 36-52 9-25 (184)
350 3tlx_A Adenylate kinase 2; str 28.8 23 0.00079 36.3 2.2 17 36-52 28-44 (243)
351 2vp4_A Deoxynucleoside kinase; 28.7 17 0.0006 36.8 1.3 18 35-52 18-35 (230)
352 4etp_A Kinesin-like protein KA 28.7 25 0.00084 39.3 2.6 39 17-55 116-159 (403)
353 2yvu_A Probable adenylyl-sulfa 28.4 14 0.00047 35.9 0.4 17 36-52 12-28 (186)
354 1nn5_A Similar to deoxythymidy 28.3 17 0.00059 35.8 1.2 18 35-52 7-24 (215)
355 1nks_A Adenylate kinase; therm 28.2 15 0.00051 35.4 0.6 13 39-51 3-15 (194)
356 1knq_A Gluconate kinase; ALFA/ 27.9 18 0.00061 34.6 1.1 17 36-52 7-23 (175)
357 3cf2_A TER ATPase, transitiona 27.9 20 0.00067 43.9 1.7 33 20-52 209-253 (806)
358 1np6_A Molybdopterin-guanine d 27.9 37 0.0013 33.1 3.4 25 38-63 7-31 (174)
359 2rep_A Kinesin-like protein KI 27.9 26 0.0009 38.7 2.6 38 18-55 92-134 (376)
360 4eaq_A DTMP kinase, thymidylat 27.8 18 0.00063 36.8 1.3 18 35-52 24-41 (229)
361 2zfi_A Kinesin-like protein KI 27.7 32 0.0011 37.9 3.3 36 20-55 67-108 (366)
362 2wwf_A Thymidilate kinase, put 27.7 19 0.00066 35.4 1.4 17 36-52 9-25 (212)
363 3eph_A TRNA isopentenyltransfe 27.5 16 0.00056 40.8 0.8 14 38-51 3-16 (409)
364 2cdn_A Adenylate kinase; phosp 27.4 22 0.00074 34.9 1.7 15 38-52 21-35 (201)
365 3cf2_A TER ATPase, transitiona 27.3 25 0.00085 43.0 2.4 22 38-61 512-533 (806)
366 3lv8_A DTMP kinase, thymidylat 27.2 20 0.00069 36.9 1.4 17 36-52 26-42 (236)
367 2r6a_A DNAB helicase, replicat 27.0 28 0.00095 39.4 2.7 35 27-61 193-227 (454)
368 2vli_A Antibiotic resistance p 26.8 20 0.00068 34.4 1.2 17 36-52 4-20 (183)
369 1f2t_A RAD50 ABC-ATPase; DNA d 26.7 31 0.0011 32.5 2.6 23 38-62 24-46 (149)
370 3kta_A Chromosome segregation 26.3 32 0.0011 33.0 2.7 22 39-62 28-49 (182)
371 1f9v_A Kinesin-like protein KA 26.2 38 0.0013 37.0 3.4 38 18-55 61-103 (347)
372 1znw_A Guanylate kinase, GMP k 25.4 36 0.0012 33.6 3.0 20 33-52 16-35 (207)
373 1ex7_A Guanylate kinase; subst 25.2 23 0.00079 35.0 1.4 14 39-52 3-16 (186)
374 2z0h_A DTMP kinase, thymidylat 25.2 24 0.00083 34.1 1.6 14 39-52 2-15 (197)
375 3a4m_A L-seryl-tRNA(SEC) kinas 25.1 22 0.00075 36.8 1.3 17 36-52 3-19 (260)
376 1p5z_B DCK, deoxycytidine kina 25.0 22 0.00076 36.7 1.3 18 35-52 22-39 (263)
377 3be4_A Adenylate kinase; malar 24.6 24 0.00081 35.3 1.4 16 37-52 5-20 (217)
378 3u06_A Protein claret segregat 24.5 27 0.00092 39.1 1.9 38 18-55 115-157 (412)
379 2hf9_A Probable hydrogenase ni 24.2 47 0.0016 32.9 3.5 23 38-61 39-61 (226)
380 1e6c_A Shikimate kinase; phosp 24.1 27 0.00092 33.1 1.6 15 38-52 3-17 (173)
381 1ukz_A Uridylate kinase; trans 23.9 24 0.00083 34.5 1.3 15 38-52 16-30 (203)
382 3t61_A Gluconokinase; PSI-biol 23.9 27 0.00091 34.3 1.6 15 38-52 19-33 (202)
383 2owm_A Nckin3-434, related to 23.8 43 0.0015 37.8 3.4 37 19-55 113-155 (443)
384 2q6t_A DNAB replication FORK h 23.7 29 0.001 39.1 2.1 36 27-62 190-225 (444)
385 1ko7_A HPR kinase/phosphatase; 23.7 43 0.0015 36.0 3.3 32 23-54 114-162 (314)
386 3t0q_A AGR253WP; kinesin, alph 23.7 42 0.0014 36.7 3.2 39 17-55 61-104 (349)
387 3d3q_A TRNA delta(2)-isopenten 23.6 25 0.00086 38.3 1.4 15 38-52 8-22 (340)
388 2bbw_A Adenylate kinase 4, AK4 23.6 29 0.00097 35.4 1.8 16 37-52 27-42 (246)
389 1qf9_A UMP/CMP kinase, protein 23.6 22 0.00074 34.2 0.8 15 38-52 7-21 (194)
390 1htw_A HI0065; nucleotide-bind 23.5 20 0.00067 34.4 0.5 17 35-51 31-47 (158)
391 3uie_A Adenylyl-sulfate kinase 23.4 25 0.00086 34.6 1.3 17 35-51 23-39 (200)
392 2bdt_A BH3686; alpha-beta prot 23.4 21 0.00072 34.6 0.7 16 37-52 2-17 (189)
393 2px0_A Flagellar biosynthesis 23.3 40 0.0014 35.8 2.9 23 36-58 104-126 (296)
394 3nwj_A ATSK2; P loop, shikimat 23.3 29 0.00098 36.0 1.7 29 24-52 32-63 (250)
395 3bgw_A DNAB-like replicative h 23.2 32 0.0011 38.9 2.2 36 28-63 188-223 (444)
396 2pbr_A DTMP kinase, thymidylat 23.1 28 0.00096 33.5 1.5 14 39-52 2-15 (195)
397 3auy_A DNA double-strand break 22.7 33 0.0011 37.6 2.2 23 38-62 26-48 (371)
398 1gtv_A TMK, thymidylate kinase 22.4 15 0.00052 36.3 -0.6 13 39-51 2-14 (214)
399 3qks_A DNA double-strand break 22.3 40 0.0014 33.4 2.6 24 38-63 24-47 (203)
400 1zuh_A Shikimate kinase; alpha 22.3 30 0.001 32.7 1.6 15 38-52 8-22 (168)
401 2www_A Methylmalonic aciduria 22.2 81 0.0028 34.2 5.2 26 37-63 74-99 (349)
402 2nr8_A Kinesin-like protein KI 22.1 52 0.0018 36.0 3.6 36 20-55 81-122 (358)
403 2wsm_A Hydrogenase expression/ 22.0 88 0.003 30.7 5.1 38 23-61 14-53 (221)
404 2xb4_A Adenylate kinase; ATP-b 22.0 30 0.001 34.8 1.5 14 39-52 2-15 (223)
405 2cbz_A Multidrug resistance-as 21.9 24 0.00082 36.2 0.8 19 34-52 28-46 (237)
406 3nwn_A Kinesin-like protein KI 21.8 47 0.0016 36.5 3.1 35 21-55 83-123 (359)
407 2pt5_A Shikimate kinase, SK; a 21.7 32 0.0011 32.4 1.5 14 39-52 2-15 (168)
408 2z43_A DNA repair and recombin 21.7 32 0.0011 36.9 1.7 26 33-58 103-128 (324)
409 3fb4_A Adenylate kinase; psych 21.4 30 0.001 34.2 1.4 14 39-52 2-15 (216)
410 4hlc_A DTMP kinase, thymidylat 21.2 29 0.00098 34.8 1.2 16 37-52 2-17 (205)
411 4a1f_A DNAB helicase, replicat 21.2 37 0.0012 37.0 2.1 36 27-62 36-71 (338)
412 3dl0_A Adenylate kinase; phosp 21.1 31 0.0011 34.2 1.4 14 39-52 2-15 (216)
413 3tif_A Uncharacterized ABC tra 20.9 26 0.00088 35.9 0.8 18 34-51 28-45 (235)
414 2j9r_A Thymidine kinase; TK1, 20.8 52 0.0018 33.3 3.0 28 36-63 27-54 (214)
415 1ny5_A Transcriptional regulat 20.7 57 0.002 35.9 3.6 27 26-52 145-175 (387)
416 3tqf_A HPR(Ser) kinase; transf 20.6 37 0.0013 33.4 1.8 18 37-54 16-34 (181)
417 2pze_A Cystic fibrosis transme 20.5 26 0.00089 35.7 0.7 19 34-52 31-49 (229)
418 3umf_A Adenylate kinase; rossm 20.5 38 0.0013 34.3 1.9 18 34-51 26-43 (217)
419 3ld9_A DTMP kinase, thymidylat 20.5 31 0.0011 35.1 1.3 17 36-52 20-36 (223)
420 1sgw_A Putative ABC transporte 20.3 27 0.00092 35.3 0.7 19 34-52 32-50 (214)
421 1pjr_A PCRA; DNA repair, DNA r 20.2 66 0.0023 38.7 4.3 39 19-63 12-50 (724)
422 1e4v_A Adenylate kinase; trans 20.0 30 0.001 34.4 1.0 14 39-52 2-15 (214)
No 1
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=100.00 E-value=6e-92 Score=846.48 Aligned_cols=598 Identities=24% Similarity=0.363 Sum_probs=437.7
Q ss_pred CCCCHHHHHHHHHHHHHHHcCCceeeeCCCCCcchHHHHHHHHHhHHHHHHHHHHHhHhhhhhccCCCCCCCCCCCCCCc
Q 002378 17 YKPYSIQTDFMKALYCSLENGGVSMLESPTGTGKTLSIICSALQWVVDQKQKQKQKQKYETMIKSDHSFTNNGDCSSNDE 96 (929)
Q Consensus 17 f~py~~Q~~~M~~v~~~~~~~~~~~~esptgtgktl~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (929)
|+|||.|.++|.+|+++|.+|+++|+|+|||||||+++|+++|.|+...
T Consensus 2 ~~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~------------------------------- 50 (620)
T 4a15_A 2 YENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSER------------------------------- 50 (620)
T ss_dssp ---CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHH-------------------------------
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhc-------------------------------
Confidence 7899999999999999999999999999999999999999999986420
Q ss_pred chhHHHhhhchhhhHHHHHHHhhhccCCCcccchhhhccccccccccccchhhchhhhhhhhcccccccCCccccccccc
Q 002378 97 PDWMRNFVVNRDFQAEDAKIKKKKNGCGLGKTGERKHREISTDTFSHSMEKDKCFTKKECENLQSINDQSELSDEEFLLE 176 (929)
Q Consensus 97 pdw~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (929)
T Consensus 51 -------------------------------------------------------------------------------- 50 (620)
T 4a15_A 51 -------------------------------------------------------------------------------- 50 (620)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccccCCCccccccCCCCCCCCCCcccccCCccccCcccEEEEecccchhHHHHHHHHHhcccCCCeeEEEeccc
Q 002378 177 EYESEEEGAIGGGKSKRKAGAGTISSSSDEEEEDGLDEEGEEVLKVYFCSRTHSQLSQFIKELRKTVFANEIKVVCLGSR 256 (929)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kIiy~SRTHSQL~Qvi~ELrkt~~~~~~~~~~L~SR 256 (929)
.+||+|+||||+|..|+++||+++.....+++++|.||
T Consensus 51 ------------------------------------------~~kvli~t~T~~l~~Qi~~el~~l~~~~~~~~~~l~gr 88 (620)
T 4a15_A 51 ------------------------------------------KLKVLYLVRTNSQEEQVIKELRSLSSTMKIRAIPMQGR 88 (620)
T ss_dssp ------------------------------------------TCEEEEEESSHHHHHHHHHHHHHHHHHSCCCEEECCCH
T ss_pred ------------------------------------------CCeEEEECCCHHHHHHHHHHHHHHhhccCeEEEEEECC
Confidence 03699999999999999999999876556999999999
Q ss_pred ccccc-cHHHhhcCCchhhHH---HHHHHhhhhhhhhhhhhhccccccccccCCCCCCcCcccchhhhccccccccCCCC
Q 002378 257 KNFCI-NEEVLRLGNSTHINE---RCLELQNKKKNEICKIKNLGAEGKVRRTKAFSGCPVLRSHKLQKGFRNEISQQGAL 332 (929)
Q Consensus 257 ~~lCi-n~~v~~~~~~~~~n~---~C~~l~~~k~~~~~~~~~~~~~~~~~~~~~~~~C~y~~~~~~~~~~~~~~~~~~v~ 332 (929)
++||+ |+.++.+.+ ..+++ .|..+.+..+ ......|+||.+.....+ ..+.+..+++
T Consensus 89 ~~lC~~~~~~~~~~~-~~~~~~~~~C~~l~~~~~-----------------~~~~~~C~~~~~~~~~gd-~~~~l~~~~~ 149 (620)
T 4a15_A 89 VNMCILYRMVDDLHE-INAESLAKFCNMKKREVM-----------------AGNEAACPYFNFKIRSDE-TKRFLFDELP 149 (620)
T ss_dssp HHHCSSHHHHCCCSS-CCHHHHHHHHHHHHHHHH-----------------TTCTTSSTTCSGGGGCHH-HHHHHHHHCC
T ss_pred CcccccChhhhhccc-chhhhHHHHHHHHHhccc-----------------cCCCCCCCcccccCcccc-hhHHhccCCC
Confidence 99999 999987654 45565 8998875421 012257999988643111 1123355789
Q ss_pred CHHHHHHhcccCCCCchhhhhcccCCCcEEEeccccccCHHHHHH----hCCCCCCCEEEEeCCcChHHHHHhhcccccC
Q 002378 333 DIEDLVHLGRHMRTCPYYGSRSMVPTADLVVLPYQSLLSKSARES----LGLNLKNNIVIIDEAHNLADSLINMYNAKIT 408 (929)
Q Consensus 333 DIEdL~~~g~~~~~CPYy~sR~~~~~AdII~~pYnyLl~~~~R~~----l~i~l~~~ivI~DEAHNL~d~~~~~~S~~ls 408 (929)
|+|+|++.|++++.||||.+|+.+.+|||||+||||||||.+|+. ++++++++||||||||||+|+|++++|++|+
T Consensus 150 die~l~~~~~~~~~CPy~~aR~~~~~ADvVV~ny~ylld~~~r~~~~~~~~i~p~~~ivI~DEAHNL~d~a~~~~S~~ls 229 (620)
T 4a15_A 150 TAEEFYDYGERNNVCPYESMKAALPDADIVIAPYAYFLNRSVAEKFLSHWGVSRNQIVIILDEAHNLPDIGRSIGSFRIS 229 (620)
T ss_dssp CHHHHHHHHHHTTCCHHHHHHHHGGGCSEEEEEHHHHTCHHHHHHHHHHHTCCGGGEEEEETTGGGHHHHHHHHHCEEEE
T ss_pred CHHHHHHHhhhcCCCccHHHHHHhhcCCEEEeCchhhcCHHHHHHHHHhhccCcCCeEEEEECCCchHHHHHHhhcceeC
Confidence 999999999999999999999999999999999999999999875 6889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHH-HHHHHHhhccccccccccccCcccCccCCCCcccHHHHHhh
Q 002378 409 LSQLENVHSHLEKYFGRFCSLLGPGNRRYIQTLMVFTR-AFLQVLLKEKDENDVRQDSENSTGAKHAFDSSVAINEFLFS 487 (929)
Q Consensus 409 ~~~l~~a~~~l~~~~~~~~~~l~~~n~~~~~~l~~l~~-~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 487 (929)
..+|..+.+++..+..+. +. +...+..+...+. .+...+...... . .......+++..
T Consensus 230 ~~~l~~~~~~l~~~~~~~---~~--~~~~~~~~~~~~~~~l~~~~~~~~~~---------~-------~~~~~~~~l~~~ 288 (620)
T 4a15_A 230 VESLNRADREAQAYGDPE---LS--QKIHVSDLIEMIRSALQSMVSERCGK---------G-------DVRIRFQEFMEY 288 (620)
T ss_dssp HHHHHHHHHHHHHTTCCE---EE--TTEEHHHHHHHHHHHHHHHHHHHCSS---------S-------CEEECTHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhh---hh--hhHHHHHHHHHHHHHHHHHHHHhhcc---------c-------ccCCChHHHHHH
Confidence 999999999987654321 11 1111222222211 121111111110 0 000000111110
Q ss_pred ----cccccccHHHHHHHHHHhhhHHHHhhhhhhhhhhccCccccCCCCCcccCCCcchHHHHHHHHHHhcCCCCCceEE
Q 002378 488 ----LNIDNINLVKLLKYIKESNIIHKVSGYGDKAASLQKGSVLKDGGENYEEGSILSGFQSLVDMLISLTNNDGDGRII 563 (929)
Q Consensus 488 ----~~~~~~nl~~l~~~l~~~~~~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~fl~~l~~~~~d~~v~ 563 (929)
.+.. ...+.. +..++..+.+.+...... ........+..+.+|+..+...+.++.++
T Consensus 289 ~~~~~~~~---~~~l~~------~~~~l~~~~~~~~~~~~~----------~~~~~~~~~~~~~~fl~~~~~~~~~~~~~ 349 (620)
T 4a15_A 289 MRIMNKRS---EREIRS------LLNYLYLFGEYVENEKEK----------VGKVPFSYCSSVASRIIAFSDQDEEKYAA 349 (620)
T ss_dssp HHHHHTCC---HHHHHH------HHHHHHHHHHHHHHHHHH----------TTSCCCCHHHHHHHHHHHHHTSCTTTEEE
T ss_pred HHHhhccc---HHHHHH------HHHHHHHHHHHHHhhccc----------cccccccHHHHHHHHHHHHhhcCCCCEEE
Confidence 0111 011111 122232332221111000 00122345778889998885444445666
Q ss_pred EeecCCCCCCCCCCcCceEEEEecChhHHHHHHHHhhceEEEeccCCCChhhHHHhhCCCCCCCceeeeecCCccCCCCc
Q 002378 564 ISKARPISSGQQGQQGGYLKYVMLTGEKVFSEIVEQAHAVILAGGTLQPIEETRERLFPWLSPNKFHFFSCSHIVPPESI 643 (929)
Q Consensus 564 ~~~~~~~~~~~~~~~~~~L~~~cl~ps~~f~~l~~~~~svILtSGTLsP~~~f~~~L~~~~~~~~i~~~~~~hvi~~~~~ 643 (929)
|..... +..|+++|++|+..|+ ++ .+++||||||||+|+++|...||.. ...++++|+|+.+|.
T Consensus 350 ~~~~~~---------~~~l~~~~l~~~~~l~-~~-~~~~~il~SaTL~p~~~~~~~lGl~-----~~~~~~~spf~~~~~ 413 (620)
T 4a15_A 350 ILSPED---------GGYMQAACLDPSGILE-VL-KESKTIHMSGTLDPFDFYSDITGFE-----IPFKKIGEIFPPENR 413 (620)
T ss_dssp EEECGG---------GCEEEEEECCTHHHHG-GG-GGSEEEEEESSCCSHHHHHHHHCCC-----CCEEECCCCSCGGGE
T ss_pred EEEeCC---------CcEEEEEECCHHHHHH-HH-hCCeEEEEccCCCcHHHHHHHhCCC-----ceeeecCCCCCHHHe
Confidence 654221 2589999999999999 99 9999999999999999999999764 246789999999998
Q ss_pred eEEEeecCCCCCceeeeecccCChHHHHHHHHHHHHHhhccCCCeEEEccCHHHHHHHHHHHHhcChhHHhhcCccEEEc
Q 002378 644 LPVALSCGPTGKSFDFSYGSRSSSAMIEELGLLLCNLVSVVPEGIIVFFPSFEYVERVYGAWKSLGILDRIMKKKHVFRE 723 (929)
Q Consensus 644 ~~~iv~~gp~g~~l~~~y~~R~~~~~~~~l~~~i~~~~~~vpgg~LVfFpSy~~l~~~~~~w~~~~~~~~l~~~K~if~E 723 (929)
.+++++. +.++|..|+ +.+++++++.|.++++.+|||+|||||||.+|+++++.|+. +. .+ |
T Consensus 414 ~~~~~~~------~~~~~~~r~-~~~~~~~~~~i~~l~~~~~g~~lvlF~Sy~~l~~v~~~l~~------~~--~~---~ 475 (620)
T 4a15_A 414 YIAYYDG------VSSKYDTLD-EKELDRMATVIEDIILKVKKNTIVYFPSYSLMDRVENRVSF------EH--MK---E 475 (620)
T ss_dssp EEEEECC------C-------C-HHHHHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHTSSCCS------CC--EE---C
T ss_pred EEEEeCC------CCCcCCCCC-HHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHHHh------cc--hh---c
Confidence 8876632 335677775 57789999999999999999999999999999999999871 21 12 6
Q ss_pred CCC--CchHHHHHHHHHHHHhccCCCCCCCCCCCCCcEEEEEecCccccccccCCCcceEEEEEccCCCCCCCHHHHHHH
Q 002378 724 PRG--NTHVESVLKEYQKTIDTLSSRPKEDSTPLNGAMLLAVVGGKISEGINFSDGMGRCIVMVGLPYPSPSNIELLERI 801 (929)
Q Consensus 724 ~~~--~~~~~~~l~~y~~~i~~~~~~~~~~~~~~~gaiL~aV~rGk~sEGIDf~d~~~r~ViivGlPfp~~~d~~v~~k~ 801 (929)
+++ ..+.+.++++|+ + +|+|||||+||+|||||||+|+.+|+|||+|||||+| ||.+++|+
T Consensus 476 ~q~~~~~~~~~ll~~f~-----~-----------~~~vL~~v~~gsf~EGiD~~g~~l~~viI~~lPfp~~-~p~~~ar~ 538 (620)
T 4a15_A 476 YRGIDQKELYSMLKKFR-----R-----------DHGTIFAVSGGRLSEGINFPGNELEMIILAGLPFPRP-DAINRSLF 538 (620)
T ss_dssp CTTCCSHHHHHHHHHHT-----T-----------SCCEEEEETTSCC--------CCCCEEEESSCCCCCC-CHHHHHHH
T ss_pred cCCCChhHHHHHHHHhc-----c-----------CCcEEEEEecCceeccccCCCCceEEEEEEcCCCCCC-CHHHHHHH
Confidence 654 347899999997 1 6899999999999999999999999999999999999 69999999
Q ss_pred HHHhhccCCCCCccCCccccccccCCcccccccccccCCCchhh-HhhHHHHHHHHhhcccccCCCCeEEEEEEeccccc
Q 002378 802 KHIEGLGDTNSKTLNTSASDAYYNGDAQAGFGILRSCRGRGKEY-YENLCMKAVNQSIGRAIRHINDHAAILLVDLRYAS 880 (929)
Q Consensus 802 ~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-y~~~a~ravnQaiGR~IRh~~D~g~iiLlD~R~~~ 880 (929)
+|+++.+ .+|+.| |..+||++|+||+||+|||++|||+|+|+|+||
T Consensus 539 ~~~~~~~-------------------------------g~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~R~-- 585 (620)
T 4a15_A 539 DYYERKY-------------------------------GKGWEYSVVYPTAIKIRQEIGRLIRSAEDTGACVILDKRA-- 585 (620)
T ss_dssp HHHHHHH-------------------------------SCHHHHHTHHHHHHHHHHHHHTTCCSTTCCEEEEEECGGG--
T ss_pred HHHHHhh-------------------------------CCCchHHhHHHHHHHHHHHhCccccCCCceEEEEEEccch--
Confidence 9999863 135666 888999999999999999999999999999999
Q ss_pred CCCcCCCCCccCCCcHHHHhhcccccCCHHHHHHHHHHHHHHhhhc
Q 002378 881 ESSKRSCSHPANKLPRWIKDRLVSSTNNYGEVHRLLHQFFKFNKNR 926 (929)
Q Consensus 881 ~~~~~~~~~~~~~LP~Wir~~i~~~~~~~~~~~~~l~~Ff~~~~~~ 926 (929)
++ +++.||+ ++.... ...++.+||.....|
T Consensus 586 ~~-------~~~~LP~-~~~~~~--------~~~~~~~f~~~~~~~ 615 (620)
T 4a15_A 586 GQ-------FRKFIPD-MKKTSD--------PASDIYNFFISAQAR 615 (620)
T ss_dssp GG-------GGGGSTT-CEEESC--------HHHHHHHHHHHHHTC
T ss_pred HH-------HHHhCCc-hhhhcC--------cHHHHHHHHhChhhh
Confidence 55 7899999 765443 356788999877544
No 2
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=100.00 E-value=1.9e-78 Score=723.03 Aligned_cols=474 Identities=21% Similarity=0.233 Sum_probs=350.2
Q ss_pred EEEEecccchhHHHHHHHHHhcccCCCeeEEEecccccccccHHHhhcCCchhhHHHHHHHhhhhhhhhhhhhhcccccc
Q 002378 221 KVYFCSRTHSQLSQFIKELRKTVFANEIKVVCLGSRKNFCINEEVLRLGNSTHINERCLELQNKKKNEICKIKNLGAEGK 300 (929)
Q Consensus 221 kIiy~SRTHSQL~Qvi~ELrkt~~~~~~~~~~L~SR~~lCin~~v~~~~~~~~~n~~C~~l~~~k~~~~~~~~~~~~~~~ 300 (929)
+|+|+++||++..|+.+|++++.-...+++++|.||+++|+|+.+. +. .... .|.
T Consensus 49 ~v~i~~pt~~l~~q~~~~~~~l~~~~~~~~~~l~gr~~~c~~~~~~-~~-~~~~--~c~--------------------- 103 (551)
T 3crv_A 49 KVLFVVRTHNEFYPIYRDLTKIREKRNITFSFLVGKPSSCLYAEKG-AE-SEDI--PCK--------------------- 103 (551)
T ss_dssp EEEEEESSGGGHHHHHHHHTTCCCSSCCCEEECCCHHHHCTTBCTT-CC-GGGC--CGG---------------------
T ss_pred eEEEEcCCHHHHHHHHHHHHHHhhhcCccEEEEccccccCcCchhc-CC-Cccc--ccC---------------------
Confidence 5999999999999999999998433358999999999999998876 43 2221 342
Q ss_pred ccccCCCCCCcCcccchhhhccccccccCCCCCHHHHHHh----cccCCCCchhhhhcccCCCcEEEeccccccCHHHHH
Q 002378 301 VRRTKAFSGCPVLRSHKLQKGFRNEISQQGALDIEDLVHL----GRHMRTCPYYGSRSMVPTADLVVLPYQSLLSKSARE 376 (929)
Q Consensus 301 ~~~~~~~~~C~y~~~~~~~~~~~~~~~~~~v~DIEdL~~~----g~~~~~CPYy~sR~~~~~AdII~~pYnyLl~~~~R~ 376 (929)
.|+|+.+.... . ...+++++++. |+.++.||||.+|+.+..|||||+||+|||++.+|.
T Consensus 104 --------~c~~~~~~~~~----g-----~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adIVV~~~~~l~~~~~~~ 166 (551)
T 3crv_A 104 --------YCELKGSIVEV----K-----TDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADVIALTYPYFFIDRYRE 166 (551)
T ss_dssp --------GCTTTTCCCCC----C-----CCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSEEEEETHHHHCHHHHT
T ss_pred --------CCCCccccccc----c-----ccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCCEEEeCchHhcCHHHHH
Confidence 49998664321 1 15677777665 458899999999999999999999999999999888
Q ss_pred HhCCCCCCCEEEEeCCcChHHHHHhhcccccCHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHHhhcc
Q 002378 377 SLGLNLKNNIVIIDEAHNLADSLINMYNAKITLSQLENVHSHLEKYFGRFCSLLGPGNRRYIQTLMVFTRAFLQVLLKEK 456 (929)
Q Consensus 377 ~l~i~l~~~ivI~DEAHNL~d~~~~~~S~~ls~~~l~~a~~~l~~~~~~~~~~l~~~n~~~~~~l~~l~~~l~~~l~~~~ 456 (929)
.+++.+++.+|||||||||++ |++++|++|+..++..+.+++..+..+ .+++.+...+....
T Consensus 167 ~~~~~~~~~~vIiDEAHnl~d-~~~~~s~~ls~~~l~~~~~~l~~~~~~-----------------~~l~~l~~~l~~~~ 228 (551)
T 3crv_A 167 FIDIDLREYMIVIDEAHNLDK-VNELEERSLSEITIQMAIKQSKSEESR-----------------RILSKLLNQLREVV 228 (551)
T ss_dssp TSCCCSTTEEEEETTGGGGGG-GGGGGCEEEEHHHHHHHHHHCSCHHHH-----------------HHHHHHHHHHTTSC
T ss_pred hcCCCcCCeEEEEecccchHH-HHHhhceecCHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHh
Confidence 888888999999999999999 999999999999999998877543211 12222223332210
Q ss_pred ccccccccccCcccCccCCCCcccHHHHHhhcccccccH-HHHHHHHHHhhhHHHHhhhhhhhhhhccCccccCCCCCcc
Q 002378 457 DENDVRQDSENSTGAKHAFDSSVAINEFLFSLNIDNINL-VKLLKYIKESNIIHKVSGYGDKAASLQKGSVLKDGGENYE 535 (929)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~nl-~~l~~~l~~~~~~~kl~~~~~~~~~~~~~~~~~~~~~~~~ 535 (929)
. .. + .... ..++...+ ..+..+.. .+....+.....
T Consensus 229 ~-------~~-~--------~~~~-------~~~~~~~~~~~l~~l~~------~l~~~~~~~~~~-------------- 265 (551)
T 3crv_A 229 L-------PD-E--------KYIK-------VENVPKLSKEELEILAD------DYEDIRKDSLKQ-------------- 265 (551)
T ss_dssp C-------SC-S--------SCEE-------CSCCCCCCHHHHHHHHH------HHHHHHHHHHHT--------------
T ss_pred h-------cc-c--------cccc-------cccChHHHHHHHHHHHH------HHHHHHHhhhhc--------------
Confidence 0 00 0 0000 00000000 11111110 010000000000
Q ss_pred cCCCcchHHHHHHHHHHhcCCCCCceEEEeecCCCCCCCCCCcCceEEEEecChhHHHHHHHHhh-ceEEEeccCCCChh
Q 002378 536 EGSILSGFQSLVDMLISLTNNDGDGRIIISKARPISSGQQGQQGGYLKYVMLTGEKVFSEIVEQA-HAVILAGGTLQPIE 614 (929)
Q Consensus 536 ~~~~~~~l~~~~~fl~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~L~~~cl~ps~~f~~l~~~~-~svILtSGTLsP~~ 614 (929)
.......+..+.+|+..+.. + ++.+ +.. .+ +|+++|++|+..|+ ++.++ ++||||||||+|++
T Consensus 266 ~~~~~~~~~~l~~~~~~~~~-~-~~~v-~~~-----------~~-~l~~~pl~~~~~l~-~~~~~~~svIltSaTL~~~~ 329 (551)
T 3crv_A 266 GKVNKIHIGSILRFFSLLSI-G-SFIP-FSY-----------SK-RLVIKNPEISYYLN-LLNDNELSIILMSGTLPPRE 329 (551)
T ss_dssp TCBCCCHHHHHHHHHHHHHH-S-SCEE-EEE-----------TT-EEEEECCCTHHHHG-GGGCTTCEEEEEESSCCCHH
T ss_pred CCcccchHHHHHHHHHHHhc-c-CCeE-ecc-----------CC-EEEEEECCHHHHHH-HHhccCceEEEEeeCCCcHH
Confidence 00112346677778776654 2 3443 221 02 79999999999999 88998 99999999999999
Q ss_pred hHHHhhCCCCCCCc--eeeeecCCccCCCCceEEEeecCCCCCceeeeecccCChHHHHHHHHHHHHHhhccCCCeEEEc
Q 002378 615 ETRERLFPWLSPNK--FHFFSCSHIVPPESILPVALSCGPTGKSFDFSYGSRSSSAMIEELGLLLCNLVSVVPEGIIVFF 692 (929)
Q Consensus 615 ~f~~~L~~~~~~~~--i~~~~~~hvi~~~~~~~~iv~~gp~g~~l~~~y~~R~~~~~~~~l~~~i~~~~~~vpgg~LVfF 692 (929)
+|.+.||...+. . +..++++|+| ++|..+++... +..+|++|+ +.+++.+++.|.+++..+|||+||||
T Consensus 330 ~~~~~lGl~~~~-~~~~~~~~~~spf-~~~~~l~v~~~------~~~~~~~r~-~~~~~~l~~~i~~l~~~~~g~~lvlF 400 (551)
T 3crv_A 330 YMEKVWGIKRNM-LYLDVEREIQKRV-SGSYECYIGVD------VTSKYDMRS-DNMWKRYADYLLKIYFQAKANVLVVF 400 (551)
T ss_dssp HHHHTSCCCSCE-EEEEHHHHTTSCC-SCEEEEEEECS------CCCCTTTCC-HHHHHHHHHHHHHHHHHCSSEEEEEE
T ss_pred HHHHHhCCCCcc-ccccceeecCCcC-CCceEEEEeCC------CCCccccCC-HHHHHHHHHHHHHHHHhCCCCEEEEe
Confidence 999999764221 1 1156789999 88887766532 234677776 67889999999999999999999999
Q ss_pred cCHHHHHHHHHHHHhcChhHHhhcCccEEEcCCCCchHHHHHHHHHHHHhccCCCCCCCCCCCCCcEEEEEecCcccccc
Q 002378 693 PSFEYVERVYGAWKSLGILDRIMKKKHVFREPRGNTHVESVLKEYQKTIDTLSSRPKEDSTPLNGAMLLAVVGGKISEGI 772 (929)
Q Consensus 693 pSy~~l~~~~~~w~~~~~~~~l~~~K~if~E~~~~~~~~~~l~~y~~~i~~~~~~~~~~~~~~~gaiL~aV~rGk~sEGI 772 (929)
|||.+|+++++. ..++||+|+++ .+.+++++.|+. ..++||||||||+|||||
T Consensus 401 ~Sy~~l~~v~~~-----------~~~~v~~q~~~-~~~~~~~~~~~~---------------~~~~vl~~v~gg~~~EGi 453 (551)
T 3crv_A 401 PSYEIMDRVMSR-----------ISLPKYVESED-SSVEDLYSAISA---------------NNKVLIGSVGKGKLAEGI 453 (551)
T ss_dssp SCHHHHHHHHTT-----------CCSSEEECCSS-CCHHHHHHHTTS---------------SSSCEEEEESSCCSCCSS
T ss_pred cCHHHHHHHHHh-----------cCCcEEEcCCC-CCHHHHHHHHHh---------------cCCeEEEEEecceecccc
Confidence 999999999962 24789999974 456788888863 257999999999999999
Q ss_pred ccC---CCcceEEEEEccCCCCCCCHHHHHHHHHHhhccCCCCCccCCccccccccCCcccccccccccCCCch-hhHhh
Q 002378 773 NFS---DGMGRCIVMVGLPYPSPSNIELLERIKHIEGLGDTNSKTLNTSASDAYYNGDAQAGFGILRSCRGRGK-EYYEN 848 (929)
Q Consensus 773 Df~---d~~~r~ViivGlPfp~~~d~~v~~k~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~y~~ 848 (929)
||+ |+.||+|||+|||||+| ||.+++|++|+++.. + .+++ .+|..
T Consensus 454 D~~d~~g~~l~~viI~~lPfp~~-dp~~~ar~~~~~~~~---g---------------------------~~~~~~~y~~ 502 (551)
T 3crv_A 454 ELRNNDRSLISDVVIVGIPYPPP-DDYLKILAQRVSLKM---N---------------------------RENEEFLFKI 502 (551)
T ss_dssp CCEETTEESEEEEEEESCCCCCC-SHHHHHHHHHTTCCS---S---------------------------TTTHHHHTHH
T ss_pred cccccCCcceeEEEEEcCCCCCC-CHHHHHHHHHHHHhh---C---------------------------CchhHHHHHH
Confidence 999 88999999999999999 999999999998541 0 1244 33888
Q ss_pred HHHHHHHHhhcccccCCCCeEEEEEEeccccc
Q 002378 849 LCMKAVNQSIGRAIRHINDHAAILLVDLRYAS 880 (929)
Q Consensus 849 ~a~ravnQaiGR~IRh~~D~g~iiLlD~R~~~ 880 (929)
+|+++|+||+||+|||++|||+|+|||+||.+
T Consensus 503 pa~~~l~Qa~GRlIR~~~D~G~v~llD~R~~~ 534 (551)
T 3crv_A 503 PALVTIKQAIGRAIRDVNDKCNVWLLDKRFES 534 (551)
T ss_dssp HHHHHHHHHHHTTCCSTTCEEEEEEESGGGGS
T ss_pred HHHHHHHHHhccCccCCCccEEEEEeehhccc
Confidence 99999999999999999999999999999976
No 3
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=100.00 E-value=3.8e-69 Score=640.78 Aligned_cols=477 Identities=21% Similarity=0.276 Sum_probs=274.7
Q ss_pred EEEEecccchhHHHHHHHHHhcccCCCeeEEEecccccccccHHHhhcCCchhhHHHHHHHhhhhhhhhhhhhhcccccc
Q 002378 221 KVYFCSRTHSQLSQFIKELRKTVFANEIKVVCLGSRKNFCINEEVLRLGNSTHINERCLELQNKKKNEICKIKNLGAEGK 300 (929)
Q Consensus 221 kIiy~SRTHSQL~Qvi~ELrkt~~~~~~~~~~L~SR~~lCin~~v~~~~~~~~~n~~C~~l~~~k~~~~~~~~~~~~~~~ 300 (929)
+|+|+|+||++..|+++|++++ . +++++|.||+++|+|+.+.... .. ..|.
T Consensus 53 ~~~~~~~t~~l~~q~~~~~~~l--~--~~~~~l~gr~~lC~~~~~~~~~--~~--~~c~--------------------- 103 (540)
T 2vl7_A 53 KVLIFTRTHSQLDSIYKNAKLL--G--LKTGFLIGKSASCIYAQGDEEP--DE--INCS--------------------- 103 (540)
T ss_dssp EEEEEESCHHHHHHHHHHHGGG--T--CCEEEC-----------------------------------------------
T ss_pred cEEEEcCCHHHHHHHHHHHHhc--C--CcEEEecCCccccCCchhcccc--cc--cCCC---------------------
Confidence 5999999999999999999995 3 7899999999999998765221 11 1242
Q ss_pred ccccCCCCCCcCcccchhhhccccccccCCCCCHHHHHHhcccCCCCchhhhhcccCCCcEEEeccccccCHHHHHHhC-
Q 002378 301 VRRTKAFSGCPVLRSHKLQKGFRNEISQQGALDIEDLVHLGRHMRTCPYYGSRSMVPTADLVVLPYQSLLSKSARESLG- 379 (929)
Q Consensus 301 ~~~~~~~~~C~y~~~~~~~~~~~~~~~~~~v~DIEdL~~~g~~~~~CPYy~sR~~~~~AdII~~pYnyLl~~~~R~~l~- 379 (929)
.|+|+...... .+ .++.+.+..++++++.||||.+|+.+..|||||+||+|||++.+|+.++
T Consensus 104 --------~c~~~~~~~~~----gd-----~~~~~~~~~~~~~~~~Cpy~~~r~~~~~adiVV~n~~~l~~~~~~~~~~~ 166 (540)
T 2vl7_A 104 --------KCRLKDKIKTI----ED-----KEPSKLIEEFKDAVDYCPYYSLRANLKDKDVIAMTYPYLFQKPIRNSVFC 166 (540)
T ss_dssp ----------------------------------------------------CTTGGGCSEEEEETHHHHSHHHHHHHSC
T ss_pred --------CCCchhccccc----cc-----CCcHHHHHHHhhhcCCChHHHHHHHhhcCCEEEEChHHhcCHHHHHhhCc
Confidence 48777643221 11 1233445567888999999999999999999999999999999998877
Q ss_pred -----CCCCCCEEEEeCCcChHHHHHhhcccccCHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHHhh
Q 002378 380 -----LNLKNNIVIIDEAHNLADSLINMYNAKITLSQLENVHSHLEKYFGRFCSLLGPGNRRYIQTLMVFTRAFLQVLLK 454 (929)
Q Consensus 380 -----i~l~~~ivI~DEAHNL~d~~~~~~S~~ls~~~l~~a~~~l~~~~~~~~~~l~~~n~~~~~~l~~l~~~l~~~l~~ 454 (929)
+.+++.+|||||||||++ +++++|.+|+..++..+.+++..+... ...+. ..+..++..+..++..
T Consensus 167 ~~~~~~~~~~~~vIiDEAHnl~~-a~~~~s~~ls~~~l~~~~~~l~~~~~~-----~~~~~---~~l~~~~~~l~~~l~~ 237 (540)
T 2vl7_A 167 NKDDCLKLEDYLIVIDEAHNLLE-ADKWFTRKISRKMLERALKEIEIVERL-----NRIDA---KKVKDYINLLIDYMSK 237 (540)
T ss_dssp SSTTSCCGGGEEEEETTGGGGGG-GGGGGCEEECHHHHHHHHHHHHHHHHT-----TCCCC---HHHHHHHHHHHHHHHT
T ss_pred ccccccCcCCCEEEEEccccHHH-HHHHhccccCHHHHHHHHHHHHHHHhc-----chhhH---HHHHHHHHHHHHHHHH
Confidence 778999999999999966 899999999999999999998764321 11111 2233444455454433
Q ss_pred ccccccccccccCcccCccCCCCcccHHHHHhhcccccccHHHHHHHHHHhhhHHHHhhhhhhhhhhccCccccCCCCCc
Q 002378 455 EKDENDVRQDSENSTGAKHAFDSSVAINEFLFSLNIDNINLVKLLKYIKESNIIHKVSGYGDKAASLQKGSVLKDGGENY 534 (929)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~nl~~l~~~l~~~~~~~kl~~~~~~~~~~~~~~~~~~~~~~~ 534 (929)
.... + .. .....+ . ..+.+.+..+. .+.+.+.....
T Consensus 238 ~~~~---------~-------~~-~~~~~~----~---~~~~~~l~~l~---------~~~~~~~~~~~----------- 273 (540)
T 2vl7_A 238 LIKD---------G-------RC-HELSLM----P---LPDRETNGELI---------VVTRAYLNIDE----------- 273 (540)
T ss_dssp SCCS---------S-------SE-EEESCC----C---CCCHHHHHHHH---------HHHHHHHTTCC-----------
T ss_pred hhcc---------c-------cc-cchhhc----c---cccHHHHHHHH---------HHHHHHHHhhc-----------
Confidence 2110 0 00 000000 0 00111111111 11111100000
Q ss_pred ccCCCcchHHHHHHHHHHhcCCCCCceEEEeecCCCCCCCCCCcCceEEEEecChhHHHHHHHHhhceEEEeccCCCChh
Q 002378 535 EEGSILSGFQSLVDMLISLTNNDGDGRIIISKARPISSGQQGQQGGYLKYVMLTGEKVFSEIVEQAHAVILAGGTLQPIE 614 (929)
Q Consensus 535 ~~~~~~~~l~~~~~fl~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~L~~~cl~ps~~f~~l~~~~~svILtSGTLsP~~ 614 (929)
.....+.+..+.+|+. . ++.++|.. ..|.+.|++....+.+.+...+++|||||||+|+.
T Consensus 274 -~~~~~~~l~~~l~~~~---~---~~~~~~~~-------------~~l~~~P~~~~~~l~~~~~~~~~~IltSATL~p~~ 333 (540)
T 2vl7_A 274 -GPVKKSSLKSLLKFVE---M---KGDLYNCN-------------GSLVKVPSDVNQLIEDALNVKTFKVLMSGTLPESL 333 (540)
T ss_dssp -SSSCCCHHHHHHHHHH---S---CCEEEEET-------------TEEEEECSCHHHHHHHHTCCSSCEEEEESSCCTTC
T ss_pred -cCccHHHHHHHHHHHH---h---CCCEEEEC-------------CeEEEehHHHHHHHHHhcCccCCeEEEcccCCCCc
Confidence 0001234555555543 1 56677741 14554444433333322212334599999999941
Q ss_pred hHHHhhCCCCCCCceeeeecCCccCCCCceEEEeecCCCCCceeeeecccCChHHHHHHHHHHHHHhhccCCCeEEEccC
Q 002378 615 ETRERLFPWLSPNKFHFFSCSHIVPPESILPVALSCGPTGKSFDFSYGSRSSSAMIEELGLLLCNLVSVVPEGIIVFFPS 694 (929)
Q Consensus 615 ~f~~~L~~~~~~~~i~~~~~~hvi~~~~~~~~iv~~gp~g~~l~~~y~~R~~~~~~~~l~~~i~~~~~~vpgg~LVfFpS 694 (929)
.+...++ ....+++...+ + ++ +..+.++|..|++ .+ +++++.|.+++..+|||+||||||
T Consensus 334 ~~~~~f~----------~~~~~~~g~~~--~-~~-----~~~l~s~f~~r~~-~~-~~~~~~l~~~~~~~~g~~lvff~S 393 (540)
T 2vl7_A 334 TLTNSYK----------IVVNESYGRGE--Y-YY-----CPNVTSELRKRNS-NI-PIYSILLKRIYENSSKSVLVFFPS 393 (540)
T ss_dssp CCTTEEE----------EECCCC-CCCE--E-EE-----CTTCCCCGGGHHH-HH-HHHHHHHHHHHHTCSSEEEEEESC
T ss_pred ccchhcC----------CchhheecCCc--c-ee-----ccccCCCcccccC-HH-HHHHHHHHHHHHhCCCCEEEEeCC
Confidence 1100000 11122221111 1 11 1345567777753 45 899999999999999999999999
Q ss_pred HHHHHHHHHHHHhcChhHHhhcCccEEEcCCCCchHHHHHHHHHHHHhccCCCCCCCCCCCCCcEEEEEecCcccccccc
Q 002378 695 FEYVERVYGAWKSLGILDRIMKKKHVFREPRGNTHVESVLKEYQKTIDTLSSRPKEDSTPLNGAMLLAVVGGKISEGINF 774 (929)
Q Consensus 695 y~~l~~~~~~w~~~~~~~~l~~~K~if~E~~~~~~~~~~l~~y~~~i~~~~~~~~~~~~~~~gaiL~aV~rGk~sEGIDf 774 (929)
|.+|+.+++.|+. +++|+|+++ .++++++++|+. .++|||||++|+|||||||
T Consensus 394 ~~~~~~v~~~l~~----------~~~~~q~~~-~~~~~~l~~f~~----------------~~~il~~V~~~~~~EGiD~ 446 (540)
T 2vl7_A 394 YEMLESVRIHLSG----------IPVIEENKK-TRHEEVLELMKT----------------GKYLVMLVMRAKESEGVEF 446 (540)
T ss_dssp HHHHHHHHTTCTT----------SCEEESTTT-CCHHHHHHHHHT----------------SCCEEEEEC----------
T ss_pred HHHHHHHHHHhcc----------CceEecCCC-CcHHHHHHHHhc----------------CCeEEEEEecCceecceec
Confidence 9999999988853 579999975 688999999975 4699999999999999999
Q ss_pred CCC--cceEEEEEccCCCCCCCHHHHHHHHHHhhccCCCCCccCCccccccccCCcccccccccccCCCchhhHhhHHHH
Q 002378 775 SDG--MGRCIVMVGLPYPSPSNIELLERIKHIEGLGDTNSKTLNTSASDAYYNGDAQAGFGILRSCRGRGKEYYENLCMK 852 (929)
Q Consensus 775 ~d~--~~r~ViivGlPfp~~~d~~v~~k~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~a~r 852 (929)
+|+ ++|+|||+|||||+|.||.+++|++|+++.+++. .+..||..+ ++
T Consensus 447 ~~~~~~~~~Vii~~lPf~~~~d~~~~~r~~~~~~~~~~~-----------------------------~~~~~~~~~-~~ 496 (540)
T 2vl7_A 447 REKENLFESLVLAGLPYPNVSDDMVRKRIERLSKLTGKD-----------------------------EDSIIHDLT-AI 496 (540)
T ss_dssp -----CEEEEEEESCCCCCTTSHHHHHHHHHHHHHHTCC-----------------------------HHHHHHHHH-HH
T ss_pred CCCcccccEEEEECCCCCCCCCHHHHHHHHHHHHhhCCC-----------------------------hhHHHHHHH-HH
Confidence 998 8999999999999999999999999999874221 112346665 99
Q ss_pred HHHHhhcccccCCCCeEEEEEEecccccCCCcCCCCCccCCCcHHHH
Q 002378 853 AVNQSIGRAIRHINDHAAILLVDLRYASESSKRSCSHPANKLPRWIK 899 (929)
Q Consensus 853 avnQaiGR~IRh~~D~g~iiLlD~R~~~~~~~~~~~~~~~~LP~Wir 899 (929)
+|+||+||+|||++|||+|+|+|+||.+..||+ .+ + |+||+
T Consensus 497 ~~~Q~~GR~iR~~~D~g~v~llD~R~~~~~yg~---~l-~--~~~~~ 537 (540)
T 2vl7_A 497 VIKQTIGRAFRDPNDYVKIYLCDSRYREYFADL---GI-S--EKEIK 537 (540)
T ss_dssp HHHHHHHHHCCSTTCCCEEEEESGGGGGGTTTT---TC-C--TTTCE
T ss_pred HHHHHhCCcccCCCccEEEEEEccccCcchhhc---cc-C--hhhcc
Confidence 999999999999999999999999999998763 22 2 77764
No 4
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.51 E-value=3.9e-12 Score=152.20 Aligned_cols=82 Identities=16% Similarity=0.298 Sum_probs=62.5
Q ss_pred cCCCeEEEccCHHHHHHHHHHHHhcChhHHhhcCccE-EEcCC-CCchHHHHHHHHHHHHhccCCCCCCCCCCCCCcEEE
Q 002378 684 VPEGIIVFFPSFEYVERVYGAWKSLGILDRIMKKKHV-FREPR-GNTHVESVLKEYQKTIDTLSSRPKEDSTPLNGAMLL 761 (929)
Q Consensus 684 vpgg~LVfFpSy~~l~~~~~~w~~~~~~~~l~~~K~i-f~E~~-~~~~~~~~l~~y~~~i~~~~~~~~~~~~~~~gaiL~ 761 (929)
.++.+|||++|....+.+++.++.. +.....+ .+-+. ...+...++++|++ +...||+
T Consensus 287 ~~~~~iVF~~t~~~~~~l~~~L~~~-----~~~~~~v~~~hg~~~~~~R~~~~~~F~~---------------g~~~vLV 346 (579)
T 3sqw_A 287 SNYKAIIFAPTVKFTSFLCSILKNE-----FKKDLPILEFHGKITQNKRTSLVKRFKK---------------DESGILV 346 (579)
T ss_dssp TCCEEEEECSSHHHHHHHHHHHHHH-----HTTTSCEEEESTTSCHHHHHHHHHHHHH---------------CSSEEEE
T ss_pred CCCcEEEECCcHHHHHHHHHHHHHh-----hcCCCcEEEecCCCCHHHHHHHHHHhhc---------------CCCeEEE
Confidence 3567999999999999999888753 1111222 33332 23478899999988 4678999
Q ss_pred EEecCccccccccCCCcceEEEEEccCC
Q 002378 762 AVVGGKISEGINFSDGMGRCIVMVGLPY 789 (929)
Q Consensus 762 aV~rGk~sEGIDf~d~~~r~ViivGlPf 789 (929)
|+ ..+++|||+++ ++.||..++|.
T Consensus 347 aT--~~~~~GiDip~--v~~VI~~~~p~ 370 (579)
T 3sqw_A 347 CT--DVGARGMDFPN--VHEVLQIGVPS 370 (579)
T ss_dssp EC--GGGTSSCCCTT--CCEEEEESCCS
T ss_pred Ec--chhhcCCCccc--CCEEEEcCCCC
Confidence 98 89999999998 88999999886
No 5
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.46 E-value=9.5e-12 Score=148.17 Aligned_cols=82 Identities=16% Similarity=0.298 Sum_probs=62.2
Q ss_pred cCCCeEEEccCHHHHHHHHHHHHhcChhHHhhcCccE-EEcCC-CCchHHHHHHHHHHHHhccCCCCCCCCCCCCCcEEE
Q 002378 684 VPEGIIVFFPSFEYVERVYGAWKSLGILDRIMKKKHV-FREPR-GNTHVESVLKEYQKTIDTLSSRPKEDSTPLNGAMLL 761 (929)
Q Consensus 684 vpgg~LVfFpSy~~l~~~~~~w~~~~~~~~l~~~K~i-f~E~~-~~~~~~~~l~~y~~~i~~~~~~~~~~~~~~~gaiL~ 761 (929)
.++.+|||++|....+.+++.+... +.....+ .+-+. ...+...+++.|++ +...||+
T Consensus 338 ~~~~~iVF~~s~~~~~~l~~~L~~~-----~~~~~~v~~~h~~~~~~~R~~~~~~f~~---------------g~~~vLv 397 (563)
T 3i5x_A 338 SNYKAIIFAPTVKFTSFLCSILKNE-----FKKDLPILEFHGKITQNKRTSLVKRFKK---------------DESGILV 397 (563)
T ss_dssp TCCEEEEECSCHHHHHHHHHHHHHH-----HTTTSCEEEESTTSCHHHHHHHHHHHHH---------------CSSEEEE
T ss_pred CCCcEEEEcCcHHHHHHHHHHHHHh-----ccCCceEEEecCCCCHHHHHHHHHHHhc---------------CCCCEEE
Confidence 3567999999999999999888753 1111223 23332 23478899999987 4678999
Q ss_pred EEecCccccccccCCCcceEEEEEccCC
Q 002378 762 AVVGGKISEGINFSDGMGRCIVMVGLPY 789 (929)
Q Consensus 762 aV~rGk~sEGIDf~d~~~r~ViivGlPf 789 (929)
|+ ..+++|||+++ ++.||..++|.
T Consensus 398 aT--~~~~~GiDip~--v~~VI~~~~p~ 421 (563)
T 3i5x_A 398 CT--DVGARGMDFPN--VHEVLQIGVPS 421 (563)
T ss_dssp EC--GGGTSSCCCTT--CCEEEEESCCS
T ss_pred Ec--chhhcCCCccc--CCEEEEECCCC
Confidence 98 89999999998 88999999885
No 6
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.44 E-value=2.8e-11 Score=136.36 Aligned_cols=121 Identities=18% Similarity=0.243 Sum_probs=86.8
Q ss_pred HHHHhhcc-CCCeEEEccCHHHHHHHHHHHHhcChhHHhhcCccEEEcCC-CCchHHHHHHHHHHHHhccCCCCCCCCCC
Q 002378 677 LCNLVSVV-PEGIIVFFPSFEYVERVYGAWKSLGILDRIMKKKHVFREPR-GNTHVESVLKEYQKTIDTLSSRPKEDSTP 754 (929)
Q Consensus 677 i~~~~~~v-pgg~LVfFpSy~~l~~~~~~w~~~~~~~~l~~~K~if~E~~-~~~~~~~~l~~y~~~i~~~~~~~~~~~~~ 754 (929)
+..+.... .+.+|||+++....+.+++.++..++ .-.++-+. ...+...+++.|+.
T Consensus 234 l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~-------~~~~~~~~~~~~~r~~~~~~f~~--------------- 291 (395)
T 3pey_A 234 LTELYGLMTIGSSIIFVATKKTANVLYGKLKSEGH-------EVSILHGDLQTQERDRLIDDFRE--------------- 291 (395)
T ss_dssp HHHHHTTTTSSEEEEECSCHHHHHHHHHHHHHTTC-------CCEEECTTSCHHHHHHHHHHHHT---------------
T ss_pred HHHHHHhccCCCEEEEeCCHHHHHHHHHHHHhcCC-------cEEEeCCCCCHHHHHHHHHHHHC---------------
Confidence 33444433 46799999999999999999876542 22344432 33578889999976
Q ss_pred CCCcEEEEEecCccccccccCCCcceEEEEEccCCCCCCCHHHHHHHHHHhhccCCCCCccCCccccccccCCccccccc
Q 002378 755 LNGAMLLAVVGGKISEGINFSDGMGRCIVMVGLPYPSPSNIELLERIKHIEGLGDTNSKTLNTSASDAYYNGDAQAGFGI 834 (929)
Q Consensus 755 ~~gaiL~aV~rGk~sEGIDf~d~~~r~ViivGlPfp~~~d~~v~~k~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 834 (929)
+...||+|+ ..+++|||+++ ++.||..++|.-...
T Consensus 292 g~~~vlv~T--~~~~~Gidip~--~~~Vi~~~~p~~~~~----------------------------------------- 326 (395)
T 3pey_A 292 GRSKVLITT--NVLARGIDIPT--VSMVVNYDLPTLANG----------------------------------------- 326 (395)
T ss_dssp TSCCEEEEC--GGGSSSCCCTT--EEEEEESSCCBCTTS-----------------------------------------
T ss_pred CCCCEEEEC--ChhhcCCCccc--CCEEEEcCCCCCCcC-----------------------------------------
Confidence 356799998 89999999997 888999888752110
Q ss_pred ccccCCCchhhHhhHHHHHHHHhhcccccCCCCeEEEEEEecc
Q 002378 835 LRSCRGRGKEYYENLCMKAVNQSIGRAIRHINDHAAILLVDLR 877 (929)
Q Consensus 835 ~~~~~~~g~~~y~~~a~ravnQaiGR~IRh~~D~g~iiLlD~R 877 (929)
++ -+....|++||+-|...+--++++++.+
T Consensus 327 ----------~~---s~~~~~Qr~GR~gR~g~~g~~~~~~~~~ 356 (395)
T 3pey_A 327 ----------QA---DPATYIHRIGRTGRFGRKGVAISFVHDK 356 (395)
T ss_dssp ----------SB---CHHHHHHHHTTSSCTTCCEEEEEEECSH
T ss_pred ----------CC---CHHHhhHhccccccCCCCceEEEEEech
Confidence 00 1234579999999998877777777754
No 7
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.43 E-value=1.9e-11 Score=139.29 Aligned_cols=79 Identities=14% Similarity=0.198 Sum_probs=61.0
Q ss_pred CCCeEEEccCHHHHHHHHHHHHhcChhHHhhcCccEEEcCC-CCchHHHHHHHHHHHHhccCCCCCCCCCCCCCcEEEEE
Q 002378 685 PEGIIVFFPSFEYVERVYGAWKSLGILDRIMKKKHVFREPR-GNTHVESVLKEYQKTIDTLSSRPKEDSTPLNGAMLLAV 763 (929)
Q Consensus 685 pgg~LVfFpSy~~l~~~~~~w~~~~~~~~l~~~K~if~E~~-~~~~~~~~l~~y~~~i~~~~~~~~~~~~~~~gaiL~aV 763 (929)
.+.+|||+++....+.+++.++..++ .-.++-+. ...+...++++|+. +...||+|+
T Consensus 276 ~~~~lVf~~~~~~~~~l~~~L~~~~~-------~~~~~h~~~~~~~r~~~~~~f~~---------------g~~~vlvaT 333 (417)
T 2i4i_A 276 DSLTLVFVETKKGADSLEDFLYHEGY-------ACTSIHGDRSQRDREEALHQFRS---------------GKSPILVAT 333 (417)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHTTC-------CEEEECTTSCHHHHHHHHHHHHH---------------TSSCEEEEC
T ss_pred CCeEEEEECCHHHHHHHHHHHHHCCC-------CeeEecCCCCHHHHHHHHHHHHc---------------CCCCEEEEC
Confidence 45699999999999999999876542 22334433 23478889999987 456799999
Q ss_pred ecCccccccccCCCcceEEEEEccCC
Q 002378 764 VGGKISEGINFSDGMGRCIVMVGLPY 789 (929)
Q Consensus 764 ~rGk~sEGIDf~d~~~r~ViivGlPf 789 (929)
..+++|||+++ ++.||..++|.
T Consensus 334 --~~~~~Gidip~--v~~Vi~~~~p~ 355 (417)
T 2i4i_A 334 --AVAARGLDISN--VKHVINFDLPS 355 (417)
T ss_dssp --HHHHTTSCCCC--EEEEEESSCCS
T ss_pred --ChhhcCCCccc--CCEEEEEcCCC
Confidence 89999999998 78899877763
No 8
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.42 E-value=5.9e-11 Score=133.92 Aligned_cols=80 Identities=9% Similarity=0.120 Sum_probs=62.4
Q ss_pred cCCCeEEEccCHHHHHHHHHHHHhcChhHHhhcCccEEEcCC-CCchHHHHHHHHHHHHhccCCCCCCCCCCCCCcEEEE
Q 002378 684 VPEGIIVFFPSFEYVERVYGAWKSLGILDRIMKKKHVFREPR-GNTHVESVLKEYQKTIDTLSSRPKEDSTPLNGAMLLA 762 (929)
Q Consensus 684 vpgg~LVfFpSy~~l~~~~~~w~~~~~~~~l~~~K~if~E~~-~~~~~~~~l~~y~~~i~~~~~~~~~~~~~~~gaiL~a 762 (929)
.++.+|||++|....+.+++.+...++ ..+++-+. ...+...+++.|++ +...||+|
T Consensus 249 ~~~~~lvf~~~~~~~~~l~~~L~~~~~-------~~~~~~~~~~~~~r~~~~~~f~~---------------~~~~vlv~ 306 (391)
T 1xti_A 249 EFNQVVIFVKSVQRCIALAQLLVEQNF-------PAIAIHRGMPQEERLSRYQQFKD---------------FQRRILVA 306 (391)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHHTTC-------CEEEECTTSCHHHHHHHHHHHHT---------------TCCSEEEE
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhCCC-------cEEEEeCCCCHHHHHHHHHHHhc---------------CCCcEEEE
Confidence 456899999999999999999887542 23444443 23478889999976 45689999
Q ss_pred EecCccccccccCCCcceEEEEEccCC
Q 002378 763 VVGGKISEGINFSDGMGRCIVMVGLPY 789 (929)
Q Consensus 763 V~rGk~sEGIDf~d~~~r~ViivGlPf 789 (929)
+ ..+++|||+++ ++.||..++|.
T Consensus 307 T--~~~~~Gidi~~--~~~Vi~~~~p~ 329 (391)
T 1xti_A 307 T--NLFGRGMDIER--VNIAFNYDMPE 329 (391)
T ss_dssp S--CCCSSCBCCTT--EEEEEESSCCS
T ss_pred C--ChhhcCCCccc--CCEEEEeCCCC
Confidence 8 89999999987 88899988773
No 9
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=99.40 E-value=4.2e-11 Score=138.14 Aligned_cols=87 Identities=15% Similarity=0.221 Sum_probs=65.7
Q ss_pred HHHHhhccCCCeEEEccCHHHHHHHHHHHHhcChhHHhhcCccEEEcCC-CCchHHHHHHHHHHHHhccCCCCCCCCCCC
Q 002378 677 LCNLVSVVPEGIIVFFPSFEYVERVYGAWKSLGILDRIMKKKHVFREPR-GNTHVESVLKEYQKTIDTLSSRPKEDSTPL 755 (929)
Q Consensus 677 i~~~~~~vpgg~LVfFpSy~~l~~~~~~w~~~~~~~~l~~~K~if~E~~-~~~~~~~~l~~y~~~i~~~~~~~~~~~~~~ 755 (929)
|.+++...++++|||+++....+.+.+.+...++ .-..+-+. ...+++.+++.|+. +
T Consensus 292 l~~~l~~~~~~~lVF~~t~~~a~~l~~~L~~~~~-------~~~~lhg~~~~~~R~~~l~~F~~---------------g 349 (434)
T 2db3_A 292 LIEILSEQADGTIVFVETKRGADFLASFLSEKEF-------PTTSIHGDRLQSQREQALRDFKN---------------G 349 (434)
T ss_dssp HHHHHHHCCTTEEEECSSHHHHHHHHHHHHHTTC-------CEEEESTTSCHHHHHHHHHHHHT---------------S
T ss_pred HHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhCCC-------CEEEEeCCCCHHHHHHHHHHHHc---------------C
Confidence 3344455566799999999999999998877542 22334432 23478899999976 4
Q ss_pred CCcEEEEEecCccccccccCCCcceEEEEEccCC
Q 002378 756 NGAMLLAVVGGKISEGINFSDGMGRCIVMVGLPY 789 (929)
Q Consensus 756 ~gaiL~aV~rGk~sEGIDf~d~~~r~ViivGlPf 789 (929)
...||+|+ .-+++|||+++ ++.||..++|.
T Consensus 350 ~~~vLvaT--~v~~rGlDi~~--v~~VI~~d~p~ 379 (434)
T 2db3_A 350 SMKVLIAT--SVASRGLDIKN--IKHVINYDMPS 379 (434)
T ss_dssp SCSEEEEC--GGGTSSCCCTT--CCEEEESSCCS
T ss_pred CCcEEEEc--hhhhCCCCccc--CCEEEEECCCC
Confidence 56899998 89999999998 67899888774
No 10
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.38 E-value=2.3e-11 Score=135.67 Aligned_cols=87 Identities=21% Similarity=0.327 Sum_probs=65.2
Q ss_pred HHHHhhccCCCeEEEccCHHHHHHHHHHHHhcChhHHhhcCccEEEcCC-CCchHHHHHHHHHHHHhccCCCCCCCCCCC
Q 002378 677 LCNLVSVVPEGIIVFFPSFEYVERVYGAWKSLGILDRIMKKKHVFREPR-GNTHVESVLKEYQKTIDTLSSRPKEDSTPL 755 (929)
Q Consensus 677 i~~~~~~vpgg~LVfFpSy~~l~~~~~~w~~~~~~~~l~~~K~if~E~~-~~~~~~~~l~~y~~~i~~~~~~~~~~~~~~ 755 (929)
|..++...++.+|||++|....+.+.+.++..++ +...+-+. ...+...+++.|+. +
T Consensus 230 l~~~l~~~~~~~lvf~~~~~~~~~l~~~L~~~~~-------~~~~~~~~~~~~~r~~~~~~f~~---------------~ 287 (367)
T 1hv8_A 230 LCRLLKNKEFYGLVFCKTKRDTKELASMLRDIGF-------KAGAIHGDLSQSQREKVIRLFKQ---------------K 287 (367)
T ss_dssp HHHHHCSTTCCEEEECSSHHHHHHHHHHHHHTTC-------CEEEECSSSCHHHHHHHHHHHHT---------------T
T ss_pred HHHHHhcCCCcEEEEECCHHHHHHHHHHHHhcCC-------CeEEeeCCCCHHHHHHHHHHHHc---------------C
Confidence 4444555677899999999999999999876532 22344432 23467888999876 4
Q ss_pred CCcEEEEEecCccccccccCCCcceEEEEEccCC
Q 002378 756 NGAMLLAVVGGKISEGINFSDGMGRCIVMVGLPY 789 (929)
Q Consensus 756 ~gaiL~aV~rGk~sEGIDf~d~~~r~ViivGlPf 789 (929)
...||+|+ ..+++|||+++ ++.||..++|.
T Consensus 288 ~~~vlv~T--~~~~~Gid~~~--~~~Vi~~~~~~ 317 (367)
T 1hv8_A 288 KIRILIAT--DVMSRGIDVND--LNCVINYHLPQ 317 (367)
T ss_dssp SSSEEEEC--TTHHHHCCCSC--CSEEEESSCCS
T ss_pred CCeEEEEC--ChhhcCCCccc--CCEEEEecCCC
Confidence 56799998 89999999998 77888877654
No 11
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.36 E-value=9.7e-11 Score=132.77 Aligned_cols=79 Identities=18% Similarity=0.285 Sum_probs=59.7
Q ss_pred cCCCeEEEccCHHHHHHHHHHHHhcChhHHhhcCccEEEcCC-CCchHHHHHHHHHHHHhccCCCCCCCCCCCCCcEEEE
Q 002378 684 VPEGIIVFFPSFEYVERVYGAWKSLGILDRIMKKKHVFREPR-GNTHVESVLKEYQKTIDTLSSRPKEDSTPLNGAMLLA 762 (929)
Q Consensus 684 vpgg~LVfFpSy~~l~~~~~~w~~~~~~~~l~~~K~if~E~~-~~~~~~~~l~~y~~~i~~~~~~~~~~~~~~~gaiL~a 762 (929)
.++.+|||++|...++.+++.++..++ ...++-+. ...+...+++.|++ +...||+|
T Consensus 257 ~~~~~lVf~~~~~~~~~l~~~L~~~~~-------~~~~~~~~~~~~~r~~~~~~f~~---------------g~~~vLv~ 314 (400)
T 1s2m_A 257 QINQAIIFCNSTNRVELLAKKITDLGY-------SCYYSHARMKQQERNKVFHEFRQ---------------GKVRTLVC 314 (400)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHHHHTC-------CEEEECTTSCHHHHHHHHHHHHT---------------TSSSEEEE
T ss_pred CCCcEEEEEecHHHHHHHHHHHHhcCC-------CeEEecCCCCHHHHHHHHHHHhc---------------CCCcEEEE
Confidence 346799999999999999998876432 22334332 23467889999976 45679999
Q ss_pred EecCccccccccCCCcceEEEEEccC
Q 002378 763 VVGGKISEGINFSDGMGRCIVMVGLP 788 (929)
Q Consensus 763 V~rGk~sEGIDf~d~~~r~ViivGlP 788 (929)
+ ..+++|||+++ ++.||..++|
T Consensus 315 T--~~~~~Gidip~--~~~Vi~~~~p 336 (400)
T 1s2m_A 315 S--DLLTRGIDIQA--VNVVINFDFP 336 (400)
T ss_dssp S--SCSSSSCCCTT--EEEEEESSCC
T ss_pred c--CccccCCCccC--CCEEEEeCCC
Confidence 8 89999999996 6778877765
No 12
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.34 E-value=1.7e-10 Score=131.27 Aligned_cols=79 Identities=14% Similarity=0.208 Sum_probs=61.0
Q ss_pred cCCCeEEEccCHHHHHHHHHHHHhcChhHHhhcCccEEEcCC-CCchHHHHHHHHHHHHhccCCCCCCCCCCCCCcEEEE
Q 002378 684 VPEGIIVFFPSFEYVERVYGAWKSLGILDRIMKKKHVFREPR-GNTHVESVLKEYQKTIDTLSSRPKEDSTPLNGAMLLA 762 (929)
Q Consensus 684 vpgg~LVfFpSy~~l~~~~~~w~~~~~~~~l~~~K~if~E~~-~~~~~~~~l~~y~~~i~~~~~~~~~~~~~~~gaiL~a 762 (929)
..+.+|||++|....+.+.+.+...++ +-.++-+. ...+...+++.|++ +...||+|
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~~~~-------~~~~~h~~~~~~~r~~~~~~f~~---------------g~~~vlv~ 332 (410)
T 2j0s_A 275 TITQAVIFCNTKRKVDWLTEKMREANF-------TVSSMHGDMPQKERESIMKEFRS---------------GASRVLIS 332 (410)
T ss_dssp TSSEEEEECSSHHHHHHHHHHHHHTTC-------CCEEECTTSCHHHHHHHHHHHHH---------------TSSCEEEE
T ss_pred CCCcEEEEEcCHHHHHHHHHHHHhCCC-------ceEEeeCCCCHHHHHHHHHHHHC---------------CCCCEEEE
Confidence 356899999999999999998876542 22334332 23578899999987 45679998
Q ss_pred EecCccccccccCCCcceEEEEEccC
Q 002378 763 VVGGKISEGINFSDGMGRCIVMVGLP 788 (929)
Q Consensus 763 V~rGk~sEGIDf~d~~~r~ViivGlP 788 (929)
+ ..+++|||+++ ++.||..++|
T Consensus 333 T--~~~~~Gidi~~--v~~Vi~~~~p 354 (410)
T 2j0s_A 333 T--DVWARGLDVPQ--VSLIINYDLP 354 (410)
T ss_dssp C--GGGSSSCCCTT--EEEEEESSCC
T ss_pred C--ChhhCcCCccc--CCEEEEECCC
Confidence 8 89999999996 6778887765
No 13
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.30 E-value=1.7e-10 Score=131.25 Aligned_cols=80 Identities=10% Similarity=0.206 Sum_probs=54.2
Q ss_pred cCCCeEEEccCHHHHHHHHHHHHhcChhHHhhcCccEEEcCC-CCchHHHHHHHHHHHHhccCCCCCCCCCCCCCcEEEE
Q 002378 684 VPEGIIVFFPSFEYVERVYGAWKSLGILDRIMKKKHVFREPR-GNTHVESVLKEYQKTIDTLSSRPKEDSTPLNGAMLLA 762 (929)
Q Consensus 684 vpgg~LVfFpSy~~l~~~~~~w~~~~~~~~l~~~K~if~E~~-~~~~~~~~l~~y~~~i~~~~~~~~~~~~~~~gaiL~a 762 (929)
..+.+|||+++....+.+++.+...++ ...++-+. ...+...+++.|+. +...||+|
T Consensus 279 ~~~~~lvf~~~~~~~~~l~~~l~~~~~-------~~~~~h~~~~~~~r~~~~~~f~~---------------g~~~vlv~ 336 (414)
T 3eiq_A 279 TITQAVIFINTRRKVDWLTEKMHARDF-------TVSAMHGDMDQKERDVIMREFRS---------------GSSRVLIT 336 (414)
T ss_dssp CCSSCEEECSCHHHHHHHHHHHHTTTC-------CCEEC---CHHHHHHHHHHHHSC---------------C---CEEE
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHhcCC-------eEEEecCCCCHHHHHHHHHHHHc---------------CCCcEEEE
Confidence 346899999999999999998876532 22333332 22467888888865 35578888
Q ss_pred EecCccccccccCCCcceEEEEEccCC
Q 002378 763 VVGGKISEGINFSDGMGRCIVMVGLPY 789 (929)
Q Consensus 763 V~rGk~sEGIDf~d~~~r~ViivGlPf 789 (929)
+ ..+++|||+++ ++.||..++|.
T Consensus 337 T--~~~~~Gidip~--v~~Vi~~~~p~ 359 (414)
T 3eiq_A 337 T--DLLARGIDVQQ--VSLVINYDLPT 359 (414)
T ss_dssp C--SSCC--CCGGG--CSCEEESSCCS
T ss_pred C--CccccCCCccC--CCEEEEeCCCC
Confidence 8 89999999996 66788877764
No 14
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.29 E-value=2.2e-10 Score=129.97 Aligned_cols=114 Identities=14% Similarity=0.168 Sum_probs=84.2
Q ss_pred cCCCeEEEccCHHHHHHHHHHHHhcChhHHhhcCccEEEcCC-CCchHHHHHHHHHHHHhccCCCCCCCCCCCCCcEEEE
Q 002378 684 VPEGIIVFFPSFEYVERVYGAWKSLGILDRIMKKKHVFREPR-GNTHVESVLKEYQKTIDTLSSRPKEDSTPLNGAMLLA 762 (929)
Q Consensus 684 vpgg~LVfFpSy~~l~~~~~~w~~~~~~~~l~~~K~if~E~~-~~~~~~~~l~~y~~~i~~~~~~~~~~~~~~~gaiL~a 762 (929)
.++.+|||++|....+.+++.+...++ .-.++-+. ...+...+++.|++ +...||+|
T Consensus 265 ~~~~~lvf~~~~~~~~~l~~~L~~~~~-------~~~~~~~~~~~~~r~~~~~~f~~---------------g~~~vlv~ 322 (412)
T 3fht_A 265 TIAQAMIFCHTRKTASWLAAELSKEGH-------QVALLSGEMMVEQRAAVIERFRE---------------GKEKVLVT 322 (412)
T ss_dssp SSSEEEEECSSHHHHHHHHHHHHHTTC-------CCEEECTTSCHHHHHHHHHHHHT---------------TSCSEEEE
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhCCC-------eEEEecCCCCHHHHHHHHHHHHC---------------CCCcEEEE
Confidence 456899999999999999999876532 23344432 33578889999986 35679999
Q ss_pred EecCccccccccCCCcceEEEEEccCCCCCCCHHHHHHHHHHhhccCCCCCccCCccccccccCCcccccccccccCCCc
Q 002378 763 VVGGKISEGINFSDGMGRCIVMVGLPYPSPSNIELLERIKHIEGLGDTNSKTLNTSASDAYYNGDAQAGFGILRSCRGRG 842 (929)
Q Consensus 763 V~rGk~sEGIDf~d~~~r~ViivGlPfp~~~d~~v~~k~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 842 (929)
+ ..+++|||+++ ++.||..++|.-+..+.
T Consensus 323 T--~~~~~Gidip~--~~~Vi~~~~p~~~~~~~----------------------------------------------- 351 (412)
T 3fht_A 323 T--NVCARGIDVEQ--VSVVINFDLPVDKDGNP----------------------------------------------- 351 (412)
T ss_dssp C--GGGTSSCCCTT--EEEEEESSCCBCSSSSB-----------------------------------------------
T ss_pred c--CccccCCCccC--CCEEEEECCCCCCCCCc-----------------------------------------------
Confidence 8 89999999997 77898888876432110
Q ss_pred hhhHhhHHHHHHHHhhcccccCCCCeEEEEEEecc
Q 002378 843 KEYYENLCMKAVNQSIGRAIRHINDHAAILLVDLR 877 (929)
Q Consensus 843 ~~~y~~~a~ravnQaiGR~IRh~~D~g~iiLlD~R 877 (929)
.+....|++||+-|...+--+++|++..
T Consensus 352 -------s~~~~~Qr~GR~gR~g~~g~~~~~~~~~ 379 (412)
T 3fht_A 352 -------DNETYLHRIGRTGRFGKRGLAVNMVDSK 379 (412)
T ss_dssp -------CHHHHHHHHTTSSCTTCCEEEEEEECSH
T ss_pred -------chheeecccCcccCCCCCceEEEEEcCh
Confidence 0234579999999988776677788754
No 15
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.26 E-value=8.1e-10 Score=126.18 Aligned_cols=76 Identities=16% Similarity=0.339 Sum_probs=57.0
Q ss_pred cCCCeEEEccCHHHHHHHHHHHHhcChhHHhhcCccE-EEcCCCCchHHHHHHHHHHHHhccCCCCCCCCCCCCCcEEEE
Q 002378 684 VPEGIIVFFPSFEYVERVYGAWKSLGILDRIMKKKHV-FREPRGNTHVESVLKEYQKTIDTLSSRPKEDSTPLNGAMLLA 762 (929)
Q Consensus 684 vpgg~LVfFpSy~~l~~~~~~w~~~~~~~~l~~~K~i-f~E~~~~~~~~~~l~~y~~~i~~~~~~~~~~~~~~~gaiL~a 762 (929)
.++.+|||+++-...+.+.+.++..++ +.. .+-+ .. .+ ++.|++ +.-.||+|
T Consensus 251 ~~~~~lVF~~~~~~~~~l~~~L~~~~~-------~~~~~~h~---~~-r~-~~~f~~---------------g~~~vLva 303 (414)
T 3oiy_A 251 FRDGILIFAQTEEEGKELYEYLKRFKF-------NVGETWSE---FE-KN-FEDFKV---------------GKINILIG 303 (414)
T ss_dssp HCSSEEEEESSHHHHHHHHHHHHHTTC-------CEEESSSC---HH-HH-HHHHHT---------------TSCSEEEE
T ss_pred cCCCEEEEECCHHHHHHHHHHHHHcCC-------ceehhhcC---cc-hH-HHHHhC---------------CCCeEEEE
Confidence 568999999999999999998887542 111 2222 23 33 888876 45689999
Q ss_pred ----EecCccccccccCCCcceEEEEEccCC
Q 002378 763 ----VVGGKISEGINFSDGMGRCIVMVGLPY 789 (929)
Q Consensus 763 ----V~rGk~sEGIDf~d~~~r~ViivGlPf 789 (929)
+ .-+++|||+++ .++.||..++|.
T Consensus 304 t~s~T--~~~~~GiDip~-~v~~VI~~~~p~ 331 (414)
T 3oiy_A 304 VQAYY--GKLTRGVDLPE-RIKYVIFWGTPS 331 (414)
T ss_dssp ECCTT--CCCCCCCCCTT-TCCEEEEESCCT
T ss_pred ecCcC--chhhccCcccc-ccCEEEEECCCC
Confidence 7 88999999997 356799999886
No 16
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.26 E-value=1.4e-11 Score=139.18 Aligned_cols=79 Identities=13% Similarity=0.206 Sum_probs=0.0
Q ss_pred CCCeEEEccCHHHHHHHHHHHHhcChhHHhhcCccEEEcC-CCCchHHHHHHHHHHHHhccCCCCCCCCCCCCCcEEEEE
Q 002378 685 PEGIIVFFPSFEYVERVYGAWKSLGILDRIMKKKHVFREP-RGNTHVESVLKEYQKTIDTLSSRPKEDSTPLNGAMLLAV 763 (929)
Q Consensus 685 pgg~LVfFpSy~~l~~~~~~w~~~~~~~~l~~~K~if~E~-~~~~~~~~~l~~y~~~i~~~~~~~~~~~~~~~gaiL~aV 763 (929)
.+.+|||++|...++.+.+.++..++ .-.++-+ ....+...+++.|++ +...||+|+
T Consensus 259 ~~~~lVf~~~~~~~~~l~~~L~~~~~-------~~~~~~~~~~~~~r~~~~~~f~~---------------~~~~vlv~T 316 (394)
T 1fuu_A 259 VTQAVIFCNTRRKVEELTTKLRNDKF-------TVSAIYSDLPQQERDTIMKEFRS---------------GSSRILIST 316 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCcEEEEECCHHHHHHHHHHHHHcCC-------eEEEeeCCCCHHHHHHHHHHHHC---------------CCCcEEEEC
Confidence 46799999999999999988876532 1112221 223466788888876 356788888
Q ss_pred ecCccccccccCCCcceEEEEEccCC
Q 002378 764 VGGKISEGINFSDGMGRCIVMVGLPY 789 (929)
Q Consensus 764 ~rGk~sEGIDf~d~~~r~ViivGlPf 789 (929)
..+++|||+++ ++.||..++|.
T Consensus 317 --~~~~~Gldi~~--~~~Vi~~~~p~ 338 (394)
T 1fuu_A 317 --DLLARGIDVQQ--VSLVINYDLPA 338 (394)
T ss_dssp --------------------------
T ss_pred --ChhhcCCCccc--CCEEEEeCCCC
Confidence 89999999997 66788777654
No 17
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.21 E-value=8.9e-10 Score=121.32 Aligned_cols=78 Identities=13% Similarity=0.183 Sum_probs=58.1
Q ss_pred hccCCCeEEEccCHHHHHHHHHHHHhcChhHHhhcCccEEEcC-CCCchHHHHHHHHHHHHhccCCCCCCCCCCCCCcEE
Q 002378 682 SVVPEGIIVFFPSFEYVERVYGAWKSLGILDRIMKKKHVFREP-RGNTHVESVLKEYQKTIDTLSSRPKEDSTPLNGAML 760 (929)
Q Consensus 682 ~~vpgg~LVfFpSy~~l~~~~~~w~~~~~~~~l~~~K~if~E~-~~~~~~~~~l~~y~~~i~~~~~~~~~~~~~~~gaiL 760 (929)
...++.+|||+++....+.+.+.++. ...+-+ ....+...++++|++ +...||
T Consensus 217 ~~~~~~~lvf~~~~~~~~~l~~~l~~-----------~~~~~~~~~~~~r~~~~~~f~~---------------~~~~vl 270 (337)
T 2z0m_A 217 ENKDKGVIVFVRTRNRVAKLVRLFDN-----------AIELRGDLPQSVRNRNIDAFRE---------------GEYDML 270 (337)
T ss_dssp TCCCSSEEEECSCHHHHHHHHTTCTT-----------EEEECTTSCHHHHHHHHHHHHT---------------TSCSEE
T ss_pred hCCCCcEEEEEcCHHHHHHHHHHhhh-----------hhhhcCCCCHHHHHHHHHHHHc---------------CCCcEE
Confidence 45667899999999999888765542 122332 223467889999976 456799
Q ss_pred EEEecCccccccccCCCcceEEEEEccCC
Q 002378 761 LAVVGGKISEGINFSDGMGRCIVMVGLPY 789 (929)
Q Consensus 761 ~aV~rGk~sEGIDf~d~~~r~ViivGlPf 789 (929)
+|+ ..+++|||+++ ++.||..+.|.
T Consensus 271 v~T--~~~~~Gid~~~--~~~Vi~~~~~~ 295 (337)
T 2z0m_A 271 ITT--DVASRGLDIPL--VEKVINFDAPQ 295 (337)
T ss_dssp EEC--HHHHTTCCCCC--BSEEEESSCCS
T ss_pred EEc--CccccCCCccC--CCEEEEecCCC
Confidence 998 89999999997 67888877663
No 18
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.05 E-value=1e-08 Score=129.53 Aligned_cols=45 Identities=18% Similarity=0.324 Sum_probs=37.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHcCCceeeeCCCCCcchHHHHHHHHH
Q 002378 12 FPAFPYKPYSIQTDFMKALYCSLENGGVSMLESPTGTGKTLSIICSALQ 60 (929)
Q Consensus 12 ~~~FPf~py~~Q~~~M~~v~~~~~~~~~~~~esptgtgktl~~l~~~l~ 60 (929)
--.|||+|+|.|.+.+. +|.+|+++|+.+|||+|||++++.+.+.
T Consensus 80 ~~~~~f~L~~~Q~eai~----~l~~g~~vLV~apTGSGKTlva~lai~~ 124 (1010)
T 2xgj_A 80 ARTYPFTLDPFQDTAIS----CIDRGESVLVSAHTSAGKTVVAEYAIAQ 124 (1010)
T ss_dssp SCCCSSCCCHHHHHHHH----HHHHTCEEEEECCTTSCHHHHHHHHHHH
T ss_pred HHhCCCCCCHHHHHHHH----HHHcCCCEEEECCCCCChHHHHHHHHHH
Confidence 34589999999999877 4677999999999999999987766543
No 19
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.02 E-value=1.5e-08 Score=129.12 Aligned_cols=45 Identities=18% Similarity=0.316 Sum_probs=38.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHcCCceeeeCCCCCcchHHHHHHHHHh
Q 002378 13 PAFPYKPYSIQTDFMKALYCSLENGGVSMLESPTGTGKTLSIICSALQW 61 (929)
Q Consensus 13 ~~FPf~py~~Q~~~M~~v~~~~~~~~~~~~esptgtgktl~~l~~~l~~ 61 (929)
-.|||+|+|+|.+.+. +|.+|+++|+.+|||+|||++++.+++..
T Consensus 179 ~~~~f~ltp~Q~~AI~----~i~~g~dvLV~ApTGSGKTlva~l~i~~~ 223 (1108)
T 3l9o_A 179 RTYPFTLDPFQDTAIS----CIDRGESVLVSAHTSAGKTVVAEYAIAQS 223 (1108)
T ss_dssp SCCSSCCCHHHHHHHH----HHTTTCCEEEECCSSSHHHHHHHHHHHHH
T ss_pred HhCCCCCCHHHHHHHH----HHHcCCCEEEECCCCCChHHHHHHHHHHH
Confidence 4589999999998866 56889999999999999999988776543
No 20
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=98.97 E-value=2.8e-08 Score=125.39 Aligned_cols=87 Identities=14% Similarity=0.114 Sum_probs=60.6
Q ss_pred ccCCCeEEEccCHHHHHHHHHHHHhcChhH--------------------------------HhhcCc-cEEEcCCCCch
Q 002378 683 VVPEGIIVFFPSFEYVERVYGAWKSLGILD--------------------------------RIMKKK-HVFREPRGNTH 729 (929)
Q Consensus 683 ~vpgg~LVfFpSy~~l~~~~~~w~~~~~~~--------------------------------~l~~~K-~if~E~~~~~~ 729 (929)
.-.+.+|||++|-...+.+...+...++.. .+-... .++--+.....
T Consensus 334 ~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~ 413 (997)
T 4a4z_A 334 RELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIV 413 (997)
T ss_dssp TTCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHH
T ss_pred CCCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHH
Confidence 345789999999999999888776543311 000011 12222222346
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCCCCCCcEEEEEecCccccccccCCCcceEEEEEccCC
Q 002378 730 VESVLKEYQKTIDTLSSRPKEDSTPLNGAMLLAVVGGKISEGINFSDGMGRCIVMVGLPY 789 (929)
Q Consensus 730 ~~~~l~~y~~~i~~~~~~~~~~~~~~~gaiL~aV~rGk~sEGIDf~d~~~r~ViivGlPf 789 (929)
.+.+++.|.+ +.-.||||+ --+++|||+|+ +.||+.++|-
T Consensus 414 R~~v~~~F~~---------------G~~kVLvAT--~~~a~GIDiP~---~~VVi~~~~k 453 (997)
T 4a4z_A 414 KELIEILFSK---------------GFIKVLFAT--ETFAMGLNLPT---RTVIFSSIRK 453 (997)
T ss_dssp HHHHHHHHHT---------------TCCSEEEEC--THHHHSCCCCC---SEEEESCSEE
T ss_pred HHHHHHHHHC---------------CCCcEEEEc--hHhhCCCCCCC---ceEEEecccc
Confidence 7888888876 456899999 89999999999 8899988775
No 21
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=98.68 E-value=4.6e-08 Score=102.14 Aligned_cols=42 Identities=31% Similarity=0.352 Sum_probs=36.8
Q ss_pred CCCHHHHHHHHHHHHHHHcCCceeeeCCCCCcchHHHHHHHHHhHH
Q 002378 18 KPYSIQTDFMKALYCSLENGGVSMLESPTGTGKTLSIICSALQWVV 63 (929)
Q Consensus 18 ~py~~Q~~~M~~v~~~~~~~~~~~~esptgtgktl~~l~~~l~~~~ 63 (929)
.|+|+|.+.+. .+.+|+++|+.+|||||||++++.+++.++.
T Consensus 42 ~~~~~Q~~~i~----~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~ 83 (228)
T 3iuy_A 42 KPTPIQSQAWP----IILQGIDLIVVAQTGTGKTLSYLMPGFIHLD 83 (228)
T ss_dssp SCCHHHHHHHH----HHHTTCCEEEECCTTSCHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHH----HHhCCCCEEEECCCCChHHHHHHHHHHHHHH
Confidence 59999998876 4557899999999999999999999887764
No 22
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=98.66 E-value=7.3e-08 Score=101.13 Aligned_cols=42 Identities=24% Similarity=0.252 Sum_probs=36.5
Q ss_pred CCCHHHHHHHHHHHHHHHcCCceeeeCCCCCcchHHHHHHHHHhHH
Q 002378 18 KPYSIQTDFMKALYCSLENGGVSMLESPTGTGKTLSIICSALQWVV 63 (929)
Q Consensus 18 ~py~~Q~~~M~~v~~~~~~~~~~~~esptgtgktl~~l~~~l~~~~ 63 (929)
.|+|+|.+.+. .+.+|+++|+.+|||+|||++++.+++.++.
T Consensus 47 ~~~~~Q~~~i~----~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~ 88 (236)
T 2pl3_A 47 LVTEIQKQTIG----LALQGKDVLGAAKTGSGKTLAFLVPVLEALY 88 (236)
T ss_dssp BCCHHHHHHHH----HHHTTCCEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHH----HHhCCCCEEEEeCCCCcHHHHHHHHHHHHHH
Confidence 48999998876 4567899999999999999999999987764
No 23
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=98.65 E-value=5.2e-08 Score=101.27 Aligned_cols=44 Identities=27% Similarity=0.443 Sum_probs=36.2
Q ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCceeeeCCCCCcchHHHHHHHHHhH
Q 002378 15 FPY-KPYSIQTDFMKALYCSLENGGVSMLESPTGTGKTLSIICSALQWV 62 (929)
Q Consensus 15 FPf-~py~~Q~~~M~~v~~~~~~~~~~~~esptgtgktl~~l~~~l~~~ 62 (929)
+.| .|+|.|.+.+.. +.+|+++|+.+|||+|||++++.+++.++
T Consensus 32 ~g~~~~~~~Q~~~i~~----~~~~~~~lv~~pTGsGKT~~~~~~~l~~l 76 (224)
T 1qde_A 32 YGFEEPSAIQQRAIMP----IIEGHDVLAQAQSGTGKTGTFSIAALQRI 76 (224)
T ss_dssp HTCCSCCHHHHHHHHH----HHTTCCEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCCCCCcHHHHHHHHH----HhcCCCEEEECCCCCcHHHHHHHHHHHHH
Confidence 345 499999988764 55789999999999999999988877654
No 24
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=98.60 E-value=4.9e-08 Score=103.12 Aligned_cols=43 Identities=28% Similarity=0.449 Sum_probs=36.2
Q ss_pred CCC-CCHHHHHHHHHHHHHHHcCCceeeeCCCCCcchHHHHHHHHHhH
Q 002378 16 PYK-PYSIQTDFMKALYCSLENGGVSMLESPTGTGKTLSIICSALQWV 62 (929)
Q Consensus 16 Pf~-py~~Q~~~M~~v~~~~~~~~~~~~esptgtgktl~~l~~~l~~~ 62 (929)
-|. |+|+|.+.+. .+.+|+++|+.+|||+|||++++.+++.++
T Consensus 48 g~~~~~~~Q~~~i~----~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l 91 (245)
T 3dkp_A 48 GFQMPTPIQMQAIP----VMLHGRELLASAPTGSGKTLAFSIPILMQL 91 (245)
T ss_dssp TCCSCCHHHHHHHH----HHHTTCCEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHH----HHhCCCCEEEECCCCCcHHHHHHHHHHHHH
Confidence 455 9999999876 556789999999999999999998887553
No 25
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=98.57 E-value=1.3e-07 Score=100.46 Aligned_cols=42 Identities=26% Similarity=0.379 Sum_probs=36.7
Q ss_pred CCCHHHHHHHHHHHHHHHcCCceeeeCCCCCcchHHHHHHHHHhHH
Q 002378 18 KPYSIQTDFMKALYCSLENGGVSMLESPTGTGKTLSIICSALQWVV 63 (929)
Q Consensus 18 ~py~~Q~~~M~~v~~~~~~~~~~~~esptgtgktl~~l~~~l~~~~ 63 (929)
.|+|+|.+.+.. +.+|+++|+.+|||||||++++.+++.++.
T Consensus 45 ~~~~~Q~~~i~~----i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~ 86 (253)
T 1wrb_A 45 RPTPIQKNAIPA----ILEHRDIMACAQTGSGKTAAFLIPIINHLV 86 (253)
T ss_dssp SCCHHHHHHHHH----HHTTCCEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHH----HhCCCCEEEECCCCChHHHHHHHHHHHHHH
Confidence 399999998774 556899999999999999999999987765
No 26
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=98.53 E-value=3e-07 Score=97.63 Aligned_cols=43 Identities=26% Similarity=0.251 Sum_probs=36.2
Q ss_pred CC-CCCHHHHHHHHHHHHHHHcCCceeeeCCCCCcchHHHHHHHHHhH
Q 002378 16 PY-KPYSIQTDFMKALYCSLENGGVSMLESPTGTGKTLSIICSALQWV 62 (929)
Q Consensus 16 Pf-~py~~Q~~~M~~v~~~~~~~~~~~~esptgtgktl~~l~~~l~~~ 62 (929)
.| .|+|+|.+.+. .+.+|+++|+.+|||||||++++.+++..+
T Consensus 62 g~~~~~~~Q~~~i~----~i~~~~~~lv~a~TGsGKT~~~~~~il~~l 105 (249)
T 3ber_A 62 GWTKPTKIQIEAIP----LALQGRDIIGLAETGSGKTGAFALPILNAL 105 (249)
T ss_dssp TCCSCCHHHHHHHH----HHHTTCCEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHH----HHhCCCCEEEEcCCCCCchhHhHHHHHHHH
Confidence 45 59999999876 455789999999999999999998887654
No 27
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=98.34 E-value=7.2e-07 Score=105.00 Aligned_cols=99 Identities=15% Similarity=0.167 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHhhc-cCCCeEEEccCHHHHHHHHHHHHhcChhHHhhcCccEEEcC---------CCCchHHHHHHHHHH
Q 002378 670 IEELGLLLCNLVSV-VPEGIIVFFPSFEYVERVYGAWKSLGILDRIMKKKHVFREP---------RGNTHVESVLKEYQK 739 (929)
Q Consensus 670 ~~~l~~~i~~~~~~-vpgg~LVfFpSy~~l~~~~~~w~~~~~~~~l~~~K~if~E~---------~~~~~~~~~l~~y~~ 739 (929)
+..|...|...... .++.+|||.++-...+.+.+.+...+....+ +..++-+ ....+...+++.|++
T Consensus 373 ~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~---~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~ 449 (555)
T 3tbk_A 373 LRDLYLVLQEEYHLKPETKTILFVKTRALVDALKKWIEENPALSFL---KPGILTGRGRTNRATGMTLPAQKCVLEAFRA 449 (555)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEECSSHHHHHHHHHHHHHCGGGTTC---CEEECCC------------------------
T ss_pred HHHHHHHHHHHhccCCCceEEEEeCcHHHHHHHHHHHhhCcCcCce---eeeEEEecCCcccccccCHHHHHHHHHHHhc
Confidence 35566666665543 3578999999999999999999876533222 1112211 122467788888876
Q ss_pred HHhccCCCCCCCCCCCCCcEEEEEecCccccccccCCCcceEEEEEccCC
Q 002378 740 TIDTLSSRPKEDSTPLNGAMLLAVVGGKISEGINFSDGMGRCIVMVGLPY 789 (929)
Q Consensus 740 ~i~~~~~~~~~~~~~~~gaiL~aV~rGk~sEGIDf~d~~~r~ViivGlPf 789 (929)
.+.-.||+|+ .-++||||+++ ++.||..++|.
T Consensus 450 --------------~g~~~vLvaT--~~~~~GlDlp~--v~~VI~~d~p~ 481 (555)
T 3tbk_A 450 --------------SGDNNILIAT--SVADEGIDIAE--CNLVILYEYVG 481 (555)
T ss_dssp ----------------CCSEEEEC--CCTTCCEETTS--CSEEEEESCCS
T ss_pred --------------CCCeeEEEEc--chhhcCCcccc--CCEEEEeCCCC
Confidence 1234688888 89999999994 88899998875
No 28
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=98.27 E-value=1.3e-06 Score=102.97 Aligned_cols=99 Identities=18% Similarity=0.189 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHhhc-cCCCeEEEccCHHHHHHHHHHHHhcChhHHhhcCccEEEcC---------CCCchHHHHHHHHHH
Q 002378 670 IEELGLLLCNLVSV-VPEGIIVFFPSFEYVERVYGAWKSLGILDRIMKKKHVFREP---------RGNTHVESVLKEYQK 739 (929)
Q Consensus 670 ~~~l~~~i~~~~~~-vpgg~LVfFpSy~~l~~~~~~w~~~~~~~~l~~~K~if~E~---------~~~~~~~~~l~~y~~ 739 (929)
+..|.+.|.+.... .++.+|||.++-..++.+.+.+.....+..+ +..++-+ ....+...+++.|++
T Consensus 374 ~~~L~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~---~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~ 450 (556)
T 4a2p_A 374 LEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYI---KPGVLMGRGRRDQTTGMTLPSQKGVLDAFKT 450 (556)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEEESSHHHHHHHHHHHTTCSGGGSC---CEEC---------------------------
T ss_pred HHHHHHHHHHHhcCCCCceEEEEEccHHHHHHHHHHHHhCCCccee---eeeEEEccCCcccccccCHHHHHHHHHHhcc
Confidence 45566666555433 4578999999999999999988764211111 1111111 123467788888876
Q ss_pred HHhccCCCCCCCCCCCCCcEEEEEecCccccccccCCCcceEEEEEccCC
Q 002378 740 TIDTLSSRPKEDSTPLNGAMLLAVVGGKISEGINFSDGMGRCIVMVGLPY 789 (929)
Q Consensus 740 ~i~~~~~~~~~~~~~~~gaiL~aV~rGk~sEGIDf~d~~~r~ViivGlPf 789 (929)
.+.-.||+|+ .-++||||+++ +..||..++|.
T Consensus 451 --------------~g~~~vLvaT--~~~~~GiDip~--v~~VI~~d~p~ 482 (556)
T 4a2p_A 451 --------------SKDNRLLIAT--SVADEGIDIVQ--CNLVVLYEYSG 482 (556)
T ss_dssp -----------------CCEEEEE--C-------------CEEEEETCCS
T ss_pred --------------cCceEEEEEc--CchhcCCCchh--CCEEEEeCCCC
Confidence 1234689988 89999999997 88999988763
No 29
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=98.07 E-value=9.3e-06 Score=98.84 Aligned_cols=99 Identities=15% Similarity=0.181 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHhhccC-CCeEEEccCHHHHHHHHHHHHhcChhHHhhcCccEEEc---------CCCCchHHHHHHHHHH
Q 002378 670 IEELGLLLCNLVSVVP-EGIIVFFPSFEYVERVYGAWKSLGILDRIMKKKHVFRE---------PRGNTHVESVLKEYQK 739 (929)
Q Consensus 670 ~~~l~~~i~~~~~~vp-gg~LVfFpSy~~l~~~~~~w~~~~~~~~l~~~K~if~E---------~~~~~~~~~~l~~y~~ 739 (929)
+..|...|.......+ +.+|||.++-...+.+.+.++..+.+..+ +..++- .....+...++++|+.
T Consensus 382 ~~~L~~ll~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~---~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~ 458 (696)
T 2ykg_A 382 LEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFL---KPGILTGRGKTNQNTGMTLPAQKCILDAFKA 458 (696)
T ss_dssp HHHHHHHHHHHHTTCTTCCEEEECSCHHHHHHHHHHHHHCTTCCSC---CEEC---------------------------
T ss_pred HHHHHHHHHHHhccCCCCcEEEEeCcHHHHHHHHHHHHhCCCcccc---ceeEEEccCCCccccCCCHHHHHHHHHHHHh
Confidence 4555566655543334 56999999999999999998876532111 222221 1122456778888864
Q ss_pred HHhccCCCCCCCCCCCCCcEEEEEecCccccccccCCCcceEEEEEccCC
Q 002378 740 TIDTLSSRPKEDSTPLNGAMLLAVVGGKISEGINFSDGMGRCIVMVGLPY 789 (929)
Q Consensus 740 ~i~~~~~~~~~~~~~~~gaiL~aV~rGk~sEGIDf~d~~~r~ViivGlPf 789 (929)
.+.-.||+|+ .-+.+|||+++ ++.||..++|.
T Consensus 459 --------------~g~~~vLVaT--~v~~~GiDip~--v~~VI~~d~p~ 490 (696)
T 2ykg_A 459 --------------SGDHNILIAT--SVADEGIDIAQ--CNLVILYEYVG 490 (696)
T ss_dssp ----------------CCSCSEEE--ESSCCC---CC--CSEEEEESCC-
T ss_pred --------------cCCccEEEEe--chhhcCCcCcc--CCEEEEeCCCC
Confidence 0245788888 78999999997 88999988873
No 30
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=98.01 E-value=6.5e-06 Score=94.38 Aligned_cols=93 Identities=17% Similarity=0.166 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHhh-ccCCCeEEEccCHHHHHHHHHHHHhcChhHHhhcCccEEEcC---------CCCchHHHHHHHHHH
Q 002378 670 IEELGLLLCNLVS-VVPEGIIVFFPSFEYVERVYGAWKSLGILDRIMKKKHVFREP---------RGNTHVESVLKEYQK 739 (929)
Q Consensus 670 ~~~l~~~i~~~~~-~vpgg~LVfFpSy~~l~~~~~~w~~~~~~~~l~~~K~if~E~---------~~~~~~~~~l~~y~~ 739 (929)
+..|...|..... ..++.+|||+++...++.+.+.++..++ +..++-+ ....+...+++.|++
T Consensus 345 ~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~-------~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~ 417 (494)
T 1wp9_A 345 MDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGI-------KAKRFVGQASKENDRGLSQREQKLILDEFAR 417 (494)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTC-------CEEEECCSSCC-------CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCC-------CcEEEeccccccccccCCHHHHHHHHHHHhc
Confidence 4556666666543 2467899999999999999999887542 2344444 234578999999987
Q ss_pred HHhccCCCCCCCCCCCCCcEEEEEecCccccccccCCCcceEEEEEccC
Q 002378 740 TIDTLSSRPKEDSTPLNGAMLLAVVGGKISEGINFSDGMGRCIVMVGLP 788 (929)
Q Consensus 740 ~i~~~~~~~~~~~~~~~gaiL~aV~rGk~sEGIDf~d~~~r~ViivGlP 788 (929)
+.-.||+|+ ..++||||+++ ++.||+.++|
T Consensus 418 ---------------~~~~vLv~T--~~~~~Gldl~~--~~~Vi~~d~~ 447 (494)
T 1wp9_A 418 ---------------GEFNVLVAT--SVGEEGLDVPE--VDLVVFYEPV 447 (494)
T ss_dssp ---------------TSCSEEEEC--GGGGGGGGSTT--CCEEEESSCC
T ss_pred ---------------CCceEEEEC--CccccCCCchh--CCEEEEeCCC
Confidence 346799998 89999999998 7889877766
No 31
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=97.96 E-value=1.1e-05 Score=99.86 Aligned_cols=99 Identities=19% Similarity=0.223 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHhhc-cCCCeEEEccCHHHHHHHHHHHHhcChhHHhhcCcc-EEEc--------CCCCchHHHHHHHHHH
Q 002378 670 IEELGLLLCNLVSV-VPEGIIVFFPSFEYVERVYGAWKSLGILDRIMKKKH-VFRE--------PRGNTHVESVLKEYQK 739 (929)
Q Consensus 670 ~~~l~~~i~~~~~~-vpgg~LVfFpSy~~l~~~~~~w~~~~~~~~l~~~K~-if~E--------~~~~~~~~~~l~~y~~ 739 (929)
+..|...|...... .++.+|||.++-..++.+.+.++...-+..+ +. +|.- +....+...+++.|+.
T Consensus 615 ~~~L~~lL~~~~~~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~---~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~ 691 (797)
T 4a2q_A 615 LEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYI---KPGVLMGRGRRDQTTGMTLPSQKGVLDAFKT 691 (797)
T ss_dssp HHHHHHHHHHHHHHCSSCCEEEEESSHHHHHHHHHHHHTCSTTCSC---CCEEC--------------------------
T ss_pred HHHHHHHHHHHhccCCCCeEEEEECcHHHHHHHHHHHHhCcccccc---cceEEEecCCcccCCCCCHHHHHHHHHHhhc
Confidence 45566666654433 3478999999999999999988764211111 11 1111 1122467788888876
Q ss_pred HHhccCCCCCCCCCCCCCcEEEEEecCccccccccCCCcceEEEEEccCC
Q 002378 740 TIDTLSSRPKEDSTPLNGAMLLAVVGGKISEGINFSDGMGRCIVMVGLPY 789 (929)
Q Consensus 740 ~i~~~~~~~~~~~~~~~gaiL~aV~rGk~sEGIDf~d~~~r~ViivGlPf 789 (929)
.+.-.||+|+ .-+++|||+++ ++.||..++|.
T Consensus 692 --------------~g~~~vLVaT--~~~~~GIDlp~--v~~VI~yd~p~ 723 (797)
T 4a2q_A 692 --------------SKDNRLLIAT--SVADEGIDIVQ--CNLVVLYEYSG 723 (797)
T ss_dssp ----------------CCSEEEEE--CC-------CC--CSEEEEESCCS
T ss_pred --------------cCCceEEEEc--CchhcCCCchh--CCEEEEeCCCC
Confidence 1234699998 89999999997 88999988764
No 32
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=97.83 E-value=1.7e-05 Score=99.80 Aligned_cols=99 Identities=18% Similarity=0.189 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHhhc-cCCCeEEEccCHHHHHHHHHHHHhcChhHHhhcCccEEEc---------CCCCchHHHHHHHHHH
Q 002378 670 IEELGLLLCNLVSV-VPEGIIVFFPSFEYVERVYGAWKSLGILDRIMKKKHVFRE---------PRGNTHVESVLKEYQK 739 (929)
Q Consensus 670 ~~~l~~~i~~~~~~-vpgg~LVfFpSy~~l~~~~~~w~~~~~~~~l~~~K~if~E---------~~~~~~~~~~l~~y~~ 739 (929)
+..|...|.+.... .++.+|||.++-..++.+.+.+....-+..+ +..++- +....++..+++.|+.
T Consensus 615 ~~~L~~lL~~~~~~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~i---k~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~ 691 (936)
T 4a2w_A 615 LEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYI---KPGVLMGRGRRDQTTGMTLPSQKGVLDAFKT 691 (936)
T ss_dssp HHHHHHHHHHTTTSCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSC---CCEEC--------------------------
T ss_pred HHHHHHHHHHHhccCCCCeEEEEeCCHHHHHHHHHHHhhCcccccc---ceeEEecCCCcccCCCCCHHHHHHHHHHhhc
Confidence 35566666655433 3468999999999999999988764211111 111111 1122467788888875
Q ss_pred HHhccCCCCCCCCCCCCCcEEEEEecCccccccccCCCcceEEEEEccCC
Q 002378 740 TIDTLSSRPKEDSTPLNGAMLLAVVGGKISEGINFSDGMGRCIVMVGLPY 789 (929)
Q Consensus 740 ~i~~~~~~~~~~~~~~~gaiL~aV~rGk~sEGIDf~d~~~r~ViivGlPf 789 (929)
.+.-.||+|+ .-++||||+++ ++.||..++|.
T Consensus 692 --------------~g~~~VLVaT--~~~~eGIDlp~--v~~VI~yD~p~ 723 (936)
T 4a2w_A 692 --------------SKDNRLLIAT--SVADEGIDIVQ--CNLVVLYEYSG 723 (936)
T ss_dssp ----------------CCSEEEEE--CC------CCC--CSEEEEESCCS
T ss_pred --------------cCCeeEEEEe--CchhcCCcchh--CCEEEEeCCCC
Confidence 1234689888 89999999997 88999998875
No 33
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=97.72 E-value=0.00039 Score=81.79 Aligned_cols=79 Identities=22% Similarity=0.227 Sum_probs=61.5
Q ss_pred CCCeEEEccCHHHHHHHHHHHHhcChhHHhhcCccEEEcC-CCCchHHHHHHHHHHHHhccCCCCCCCCCCCCCcEEEEE
Q 002378 685 PEGIIVFFPSFEYVERVYGAWKSLGILDRIMKKKHVFREP-RGNTHVESVLKEYQKTIDTLSSRPKEDSTPLNGAMLLAV 763 (929)
Q Consensus 685 pgg~LVfFpSy~~l~~~~~~w~~~~~~~~l~~~K~if~E~-~~~~~~~~~l~~y~~~i~~~~~~~~~~~~~~~gaiL~aV 763 (929)
.+.+|||++|-...+.+++.++..++ .-...-+ .+..+...+++.|.. +...||+|+
T Consensus 236 ~~~~IVf~~sr~~~e~l~~~L~~~g~-------~~~~~h~~l~~~~R~~~~~~f~~---------------g~~~vlVaT 293 (523)
T 1oyw_A 236 GKSGIIYCNSRAKVEDTAARLQSKGI-------SAAAYHAGLENNVRADVQEKFQR---------------DDLQIVVAT 293 (523)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHTTC-------CEEEECTTSCHHHHHHHHHHHHT---------------TSCSEEEEC
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHCCC-------CEEEecCCCCHHHHHHHHHHHHc---------------CCCeEEEEe
Confidence 34799999999999999999887542 1223333 233568889999986 457899988
Q ss_pred ecCccccccccCCCcceEEEEEccCC
Q 002378 764 VGGKISEGINFSDGMGRCIVMVGLPY 789 (929)
Q Consensus 764 ~rGk~sEGIDf~d~~~r~ViivGlPf 789 (929)
..+.+|||+++ ++.||..++|.
T Consensus 294 --~a~~~GiD~p~--v~~VI~~~~p~ 315 (523)
T 1oyw_A 294 --VAFGMGINKPN--VRFVVHFDIPR 315 (523)
T ss_dssp --TTSCTTTCCTT--CCEEEESSCCS
T ss_pred --chhhCCCCccC--ccEEEEECCCC
Confidence 89999999998 88999988774
No 34
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=97.71 E-value=0.00036 Score=68.61 Aligned_cols=80 Identities=19% Similarity=0.240 Sum_probs=61.6
Q ss_pred cCCCeEEEccCHHHHHHHHHHHHhcChhHHhhcCccEEEcCC-CCchHHHHHHHHHHHHhccCCCCCCCCCCCCCcEEEE
Q 002378 684 VPEGIIVFFPSFEYVERVYGAWKSLGILDRIMKKKHVFREPR-GNTHVESVLKEYQKTIDTLSSRPKEDSTPLNGAMLLA 762 (929)
Q Consensus 684 vpgg~LVfFpSy~~l~~~~~~w~~~~~~~~l~~~K~if~E~~-~~~~~~~~l~~y~~~i~~~~~~~~~~~~~~~gaiL~a 762 (929)
.++.+|||+++....+.+.+.+...++ .-.++-+. ...+...+++.|+. +.-.||+|
T Consensus 34 ~~~~~lVF~~~~~~~~~l~~~L~~~~~-------~~~~~hg~~~~~~r~~~~~~f~~---------------g~~~vlv~ 91 (163)
T 2hjv_A 34 NPDSCIIFCRTKEHVNQLTDELDDLGY-------PCDKIHGGMIQEDRFDVMNEFKR---------------GEYRYLVA 91 (163)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHHTTC-------CEEEECTTSCHHHHHHHHHHHHT---------------TSCSEEEE
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHcCC-------cEEEEeCCCCHHHHHHHHHHHHc---------------CCCeEEEE
Confidence 456899999999999999998876542 22344432 23578889999986 35679988
Q ss_pred EecCccccccccCCCcceEEEEEccCC
Q 002378 763 VVGGKISEGINFSDGMGRCIVMVGLPY 789 (929)
Q Consensus 763 V~rGk~sEGIDf~d~~~r~ViivGlPf 789 (929)
+ ..+++|||+++ ++.||..++|+
T Consensus 92 T--~~~~~Gld~~~--~~~Vi~~~~p~ 114 (163)
T 2hjv_A 92 T--DVAARGIDIEN--ISLVINYDLPL 114 (163)
T ss_dssp C--GGGTTTCCCSC--CSEEEESSCCS
T ss_pred C--ChhhcCCchhc--CCEEEEeCCCC
Confidence 8 89999999997 67799888764
No 35
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=97.71 E-value=0.00044 Score=82.53 Aligned_cols=79 Identities=16% Similarity=0.154 Sum_probs=62.4
Q ss_pred CCCeEEEccCHHHHHHHHHHHHhcChhHHhhcCccEEEcC-CCCchHHHHHHHHHHHHhccCCCCCCCCCCCCCcEEEEE
Q 002378 685 PEGIIVFFPSFEYVERVYGAWKSLGILDRIMKKKHVFREP-RGNTHVESVLKEYQKTIDTLSSRPKEDSTPLNGAMLLAV 763 (929)
Q Consensus 685 pgg~LVfFpSy~~l~~~~~~w~~~~~~~~l~~~K~if~E~-~~~~~~~~~l~~y~~~i~~~~~~~~~~~~~~~gaiL~aV 763 (929)
++.+|||++|....+.+++.+...++ .-.++-+ ....+...+++.|.. +...||+|+
T Consensus 267 ~~~~IVf~~sr~~~e~la~~L~~~g~-------~~~~~h~~l~~~~R~~~~~~F~~---------------g~~~VlVAT 324 (591)
T 2v1x_A 267 GQSGIIYCFSQKDSEQVTVSLQNLGI-------HAGAYHANLEPEDKTTVHRKWSA---------------NEIQVVVAT 324 (591)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHTTC-------CEEEECTTSCHHHHHHHHHHHHT---------------TSSSEEEEC
T ss_pred CCCeEEEeCcHHHHHHHHHHHHHCCC-------CEEEecCCCCHHHHHHHHHHHHc---------------CCCeEEEEe
Confidence 46799999999999999999887542 2233333 233578889999976 467899999
Q ss_pred ecCccccccccCCCcceEEEEEccCC
Q 002378 764 VGGKISEGINFSDGMGRCIVMVGLPY 789 (929)
Q Consensus 764 ~rGk~sEGIDf~d~~~r~ViivGlPf 789 (929)
..+.+|||+++ ++.||..++|.
T Consensus 325 --~a~~~GID~p~--V~~VI~~~~p~ 346 (591)
T 2v1x_A 325 --VAFGMGIDKPD--VRFVIHHSMSK 346 (591)
T ss_dssp --TTSCTTCCCSC--EEEEEESSCCS
T ss_pred --chhhcCCCccc--ccEEEEeCCCC
Confidence 89999999998 88999998876
No 36
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=97.70 E-value=0.00027 Score=70.33 Aligned_cols=88 Identities=15% Similarity=0.218 Sum_probs=65.2
Q ss_pred HHHHhhcc-CCCeEEEccCHHHHHHHHHHHHhcChhHHhhcCccEEEcC-CCCchHHHHHHHHHHHHhccCCCCCCCCCC
Q 002378 677 LCNLVSVV-PEGIIVFFPSFEYVERVYGAWKSLGILDRIMKKKHVFREP-RGNTHVESVLKEYQKTIDTLSSRPKEDSTP 754 (929)
Q Consensus 677 i~~~~~~v-pgg~LVfFpSy~~l~~~~~~w~~~~~~~~l~~~K~if~E~-~~~~~~~~~l~~y~~~i~~~~~~~~~~~~~ 754 (929)
|..++... ++.+|||+++....+.+...+...++ .-.++-+ ....+...+++.|+.
T Consensus 25 L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~-------~~~~~~g~~~~~~R~~~~~~f~~--------------- 82 (175)
T 2rb4_A 25 LCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGH-------QVSLLSGELTVEQRASIIQRFRD--------------- 82 (175)
T ss_dssp HHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTTTC-------CEEEECSSCCHHHHHHHHHHHHT---------------
T ss_pred HHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCC-------cEEEEeCCCCHHHHHHHHHHHHc---------------
Confidence 44444444 45699999999999999998876542 2233333 233578889999986
Q ss_pred CCCcEEEEEecCccccccccCCCcceEEEEEccCCC
Q 002378 755 LNGAMLLAVVGGKISEGINFSDGMGRCIVMVGLPYP 790 (929)
Q Consensus 755 ~~gaiL~aV~rGk~sEGIDf~d~~~r~ViivGlPfp 790 (929)
+.-.||+|+ .-+++|||+++ ++.||..++|+-
T Consensus 83 g~~~vLvaT--~~~~~Gid~~~--~~~Vi~~d~p~~ 114 (175)
T 2rb4_A 83 GKEKVLITT--NVCARGIDVKQ--VTIVVNFDLPVK 114 (175)
T ss_dssp TSCSEEEEC--CSCCTTTCCTT--EEEEEESSCCC-
T ss_pred CCCeEEEEe--cchhcCCCccc--CCEEEEeCCCCC
Confidence 356799998 89999999998 788999888853
No 37
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=97.70 E-value=7.9e-05 Score=87.36 Aligned_cols=122 Identities=16% Similarity=0.167 Sum_probs=69.1
Q ss_pred HHHHhhc-cCCCeEEEccCHHHHHHHHHHHHhcChhHHhhcCccEEEcC-CCCchHHHHHHHHHHHHhccCCCCCCCCCC
Q 002378 677 LCNLVSV-VPEGIIVFFPSFEYVERVYGAWKSLGILDRIMKKKHVFREP-RGNTHVESVLKEYQKTIDTLSSRPKEDSTP 754 (929)
Q Consensus 677 i~~~~~~-vpgg~LVfFpSy~~l~~~~~~w~~~~~~~~l~~~K~if~E~-~~~~~~~~~l~~y~~~i~~~~~~~~~~~~~ 754 (929)
+..++.. .++.+|||+++....+.+...+...++ .-.++-+ ....+...+++.|+.
T Consensus 348 l~~ll~~~~~~~~LVF~~s~~~a~~l~~~L~~~~~-------~v~~~hg~~~~~~R~~il~~f~~--------------- 405 (508)
T 3fho_A 348 LVELYGLLTIGQSIIFCKKKDTAEEIARRMTADGH-------TVACLTGNLEGAQRDAIMDSFRV--------------- 405 (508)
T ss_dssp HHHHHC---CCCEEEBCSSTTTTTHHHHHHTTTTC-------CCCEEC-----CTTGGGTHHHHS---------------
T ss_pred HHHHHHhcCCCcEEEEECCHHHHHHHHHHHHhCCC-------cEEEEeCCCCHHHHHHHHHHHHC---------------
Confidence 3334443 457899999999999999988876431 1122222 223456778888865
Q ss_pred CCCcEEEEEecCccccccccCCCcceEEEEEccCCCCCCCHHHHHHHHHHhhccCCCCCccCCccccccccCCccccccc
Q 002378 755 LNGAMLLAVVGGKISEGINFSDGMGRCIVMVGLPYPSPSNIELLERIKHIEGLGDTNSKTLNTSASDAYYNGDAQAGFGI 834 (929)
Q Consensus 755 ~~gaiL~aV~rGk~sEGIDf~d~~~r~ViivGlPfp~~~d~~v~~k~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 834 (929)
+...||+|+ ..+++|||+++ ++.||..++|.-....
T Consensus 406 g~~~VLVaT--~~l~~GiDip~--v~~VI~~~~p~~~~~~---------------------------------------- 441 (508)
T 3fho_A 406 GTSKVLVTT--NVIARGIDVSQ--VNLVVNYDMPLDQAGR---------------------------------------- 441 (508)
T ss_dssp SSCCCCEEC--C-----CCCTT--CCEEEC----CC--------------------------------------------
T ss_pred CCCeEEEeC--ChhhcCCCccC--CCEEEEECCCCcccCC----------------------------------------
Confidence 456799999 89999999998 7788888877532100
Q ss_pred ccccCCCchhhHhhHHHHHHHHhhcccccCCCCeEEEEEEeccc
Q 002378 835 LRSCRGRGKEYYENLCMKAVNQSIGRAIRHINDHAAILLVDLRY 878 (929)
Q Consensus 835 ~~~~~~~g~~~y~~~a~ravnQaiGR~IRh~~D~g~iiLlD~R~ 878 (929)
. -+....|.+||+-|...+--++++++..-
T Consensus 442 -----------~---s~~~~~Qr~GRagR~g~~g~~i~l~~~~~ 471 (508)
T 3fho_A 442 -----------P---DPQTYLHRIGRTGRFGRVGVSINFVHDKK 471 (508)
T ss_dssp ---------------CTHHHHHTTSCCC-----CEEEEEECTTT
T ss_pred -----------C---CHHHHHHHhhhcCCCCCCcEEEEEEeChH
Confidence 0 02345699999999887767777777543
No 38
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=97.67 E-value=3.8e-05 Score=78.23 Aligned_cols=44 Identities=23% Similarity=0.335 Sum_probs=37.3
Q ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCceeeeCCCCCcchHHHHHHHHHhH
Q 002378 15 FPY-KPYSIQTDFMKALYCSLENGGVSMLESPTGTGKTLSIICSALQWV 62 (929)
Q Consensus 15 FPf-~py~~Q~~~M~~v~~~~~~~~~~~~esptgtgktl~~l~~~l~~~ 62 (929)
+.| .|+|.|.+.+. .+.+|+++++.+|||+|||++++.+++.++
T Consensus 21 ~g~~~~~~~Q~~~i~----~~~~~~~~lv~apTGsGKT~~~~~~~~~~~ 65 (206)
T 1vec_A 21 MGWEKPSPIQEESIP----IALSGRDILARAKNGTGKSGAYLIPLLERL 65 (206)
T ss_dssp TTCCSCCHHHHHHHH----HHHTTCCEEEECCSSSTTHHHHHHHHHHHC
T ss_pred CCCCCCCHHHHHHHH----HHccCCCEEEECCCCCchHHHHHHHHHHHh
Confidence 456 49999998876 455789999999999999999999988765
No 39
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=97.65 E-value=0.00016 Score=71.22 Aligned_cols=80 Identities=13% Similarity=0.199 Sum_probs=61.2
Q ss_pred cCCCeEEEccCHHHHHHHHHHHHhcChhHHhhcCccEEEcC-CCCchHHHHHHHHHHHHhccCCCCCCCCCCCCCcEEEE
Q 002378 684 VPEGIIVFFPSFEYVERVYGAWKSLGILDRIMKKKHVFREP-RGNTHVESVLKEYQKTIDTLSSRPKEDSTPLNGAMLLA 762 (929)
Q Consensus 684 vpgg~LVfFpSy~~l~~~~~~w~~~~~~~~l~~~K~if~E~-~~~~~~~~~l~~y~~~i~~~~~~~~~~~~~~~gaiL~a 762 (929)
.++.+|||+++-...+.+...+...++ .-..+-+ ....+...+++.|+. +.-.||+|
T Consensus 29 ~~~~~lVF~~~~~~~~~l~~~L~~~~~-------~~~~~~~~~~~~~r~~~~~~f~~---------------g~~~vlv~ 86 (165)
T 1fuk_A 29 SVTQAVIFCNTRRKVEELTTKLRNDKF-------TVSAIYSDLPQQERDTIMKEFRS---------------GSSRILIS 86 (165)
T ss_dssp TCSCEEEEESSHHHHHHHHHHHHHTTC-------CEEEECTTSCHHHHHHHHHHHHT---------------TSCSEEEE
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHcCC-------CEEEEECCCCHHHHHHHHHHHHc---------------CCCEEEEE
Confidence 456799999999999999998876532 2233333 233578889999976 35689999
Q ss_pred EecCccccccccCCCcceEEEEEccCC
Q 002378 763 VVGGKISEGINFSDGMGRCIVMVGLPY 789 (929)
Q Consensus 763 V~rGk~sEGIDf~d~~~r~ViivGlPf 789 (929)
+ ..+++|||+++ ++.||..++|.
T Consensus 87 T--~~~~~G~d~~~--~~~Vi~~~~p~ 109 (165)
T 1fuk_A 87 T--DLLARGIDVQQ--VSLVINYDLPA 109 (165)
T ss_dssp E--GGGTTTCCCCS--CSEEEESSCCS
T ss_pred c--ChhhcCCCccc--CCEEEEeCCCC
Confidence 8 89999999996 67799888765
No 40
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=97.65 E-value=0.00015 Score=73.68 Aligned_cols=87 Identities=14% Similarity=0.231 Sum_probs=65.9
Q ss_pred HHHHhhccCCCeEEEccCHHHHHHHHHHHHhcChhHHhhcCccEEEcCC-CCchHHHHHHHHHHHHhccCCCCCCCCCCC
Q 002378 677 LCNLVSVVPEGIIVFFPSFEYVERVYGAWKSLGILDRIMKKKHVFREPR-GNTHVESVLKEYQKTIDTLSSRPKEDSTPL 755 (929)
Q Consensus 677 i~~~~~~vpgg~LVfFpSy~~l~~~~~~w~~~~~~~~l~~~K~if~E~~-~~~~~~~~l~~y~~~i~~~~~~~~~~~~~~ 755 (929)
|.+++...++.+|||+++...++.+.+.++..++ ....+-+. ...+...+++.|+. +
T Consensus 46 L~~~l~~~~~~~lVF~~~~~~~~~l~~~L~~~g~-------~~~~lhg~~~~~~R~~~l~~F~~---------------g 103 (191)
T 2p6n_A 46 LLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGV-------EAVAIHGGKDQEERTKAIEAFRE---------------G 103 (191)
T ss_dssp HHHHHTTSCSCEEEECSCHHHHHHHHHHHHHHTC-------CEEEECTTSCHHHHHHHHHHHHH---------------T
T ss_pred HHHHHHhCCCCEEEEECCHHHHHHHHHHHHHcCC-------cEEEEeCCCCHHHHHHHHHHHhc---------------C
Confidence 4455556678899999999999999998876542 22344442 23578899999987 3
Q ss_pred CCcEEEEEecCccccccccCCCcceEEEEEccCC
Q 002378 756 NGAMLLAVVGGKISEGINFSDGMGRCIVMVGLPY 789 (929)
Q Consensus 756 ~gaiL~aV~rGk~sEGIDf~d~~~r~ViivGlPf 789 (929)
.-.||+|+ ..+++|||+++ ++.||..++|.
T Consensus 104 ~~~vLvaT--~~~~~Gldi~~--v~~VI~~d~p~ 133 (191)
T 2p6n_A 104 KKDVLVAT--DVASKGLDFPA--IQHVINYDMPE 133 (191)
T ss_dssp SCSEEEEC--HHHHTTCCCCC--CSEEEESSCCS
T ss_pred CCEEEEEc--CchhcCCCccc--CCEEEEeCCCC
Confidence 56799888 89999999987 67888877664
No 41
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=97.64 E-value=4e-05 Score=80.58 Aligned_cols=44 Identities=27% Similarity=0.286 Sum_probs=38.3
Q ss_pred CCC-CCHHHHHHHHHHHHHHHcCCceeeeCCCCCcchHHHHHHHHHhHH
Q 002378 16 PYK-PYSIQTDFMKALYCSLENGGVSMLESPTGTGKTLSIICSALQWVV 63 (929)
Q Consensus 16 Pf~-py~~Q~~~M~~v~~~~~~~~~~~~esptgtgktl~~l~~~l~~~~ 63 (929)
-|. |+|+|.+.+.. +.+|+++++.+|||+|||++++.+++..+.
T Consensus 48 g~~~~~~~Q~~~i~~----~~~g~~~l~~apTGsGKT~~~~l~~l~~l~ 92 (242)
T 3fe2_A 48 NFTEPTAIQAQGWPV----ALSGLDMVGVAQTGSGKTLSYLLPAIVHIN 92 (242)
T ss_dssp TCCSCCHHHHHHHHH----HHHTCCEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHH----HhCCCCEEEECCCcCHHHHHHHHHHHHHHH
Confidence 465 99999998775 457899999999999999999999998775
No 42
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=97.52 E-value=7.3e-05 Score=77.88 Aligned_cols=43 Identities=23% Similarity=0.267 Sum_probs=37.0
Q ss_pred CCC-CCHHHHHHHHHHHHHHHcCCceeeeCCCCCcchHHHHHHHHHhH
Q 002378 16 PYK-PYSIQTDFMKALYCSLENGGVSMLESPTGTGKTLSIICSALQWV 62 (929)
Q Consensus 16 Pf~-py~~Q~~~M~~v~~~~~~~~~~~~esptgtgktl~~l~~~l~~~ 62 (929)
.|. |+|+|.+.+. .+.+|+++|+.+|||+|||++++.+++..+
T Consensus 43 g~~~~~~~Q~~~i~----~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l 86 (230)
T 2oxc_A 43 GFERPSPVQLKAIP----LGRCGLDLIVQAKSGTGKTCVFSTIALDSL 86 (230)
T ss_dssp TCCSCCHHHHHHHH----HHHTTCCEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHH----HHhCCCCEEEECCCCCcHHHHHHHHHHHHH
Confidence 465 9999999876 456789999999999999999999888765
No 43
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=97.51 E-value=0.00045 Score=69.60 Aligned_cols=79 Identities=15% Similarity=0.219 Sum_probs=51.1
Q ss_pred CCCeEEEccCHHHHHHHHHHHHhcChhHHhhcCccEEEcC-CCCchHHHHHHHHHHHHhccCCCCCCCCCCCCCcEEEEE
Q 002378 685 PEGIIVFFPSFEYVERVYGAWKSLGILDRIMKKKHVFREP-RGNTHVESVLKEYQKTIDTLSSRPKEDSTPLNGAMLLAV 763 (929)
Q Consensus 685 pgg~LVfFpSy~~l~~~~~~w~~~~~~~~l~~~K~if~E~-~~~~~~~~~l~~y~~~i~~~~~~~~~~~~~~~gaiL~aV 763 (929)
++.+|||+++....+.+...++..++ ...++-+ ....+...+++.|+. +.-.||+|+
T Consensus 46 ~~k~lVF~~~~~~~~~l~~~L~~~g~-------~~~~lhg~~~~~~r~~~~~~f~~---------------g~~~vLvaT 103 (185)
T 2jgn_A 46 DSLTLVFVETKKGADSLEDFLYHEGY-------ACTSIHGDRSQRDREEALHQFRS---------------GKSPILVAT 103 (185)
T ss_dssp CSCEEEEESCHHHHHHHHHHHHHTTC-------CEEEEC--------CHHHHHHHH---------------TSSSEEEEE
T ss_pred CCeEEEEECCHHHHHHHHHHHHHcCC-------ceEEEeCCCCHHHHHHHHHHHHc---------------CCCeEEEEc
Confidence 46799999999999999998876542 2233333 233567889999987 356799998
Q ss_pred ecCccccccccCCCcceEEEEEccCC
Q 002378 764 VGGKISEGINFSDGMGRCIVMVGLPY 789 (929)
Q Consensus 764 ~rGk~sEGIDf~d~~~r~ViivGlPf 789 (929)
..+++|||+++ +..||..++|.
T Consensus 104 --~~~~~Gldi~~--~~~VI~~d~p~ 125 (185)
T 2jgn_A 104 --AVAARGLDISN--VKHVINFDLPS 125 (185)
T ss_dssp --C------CCCS--BSEEEESSCCS
T ss_pred --ChhhcCCCccc--CCEEEEeCCCC
Confidence 89999999997 67888877663
No 44
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=97.50 E-value=8.2e-05 Score=76.70 Aligned_cols=44 Identities=20% Similarity=0.323 Sum_probs=37.3
Q ss_pred CCCC-CCHHHHHHHHHHHHHHHcCCceeeeCCCCCcchHHHHHHHHHhH
Q 002378 15 FPYK-PYSIQTDFMKALYCSLENGGVSMLESPTGTGKTLSIICSALQWV 62 (929)
Q Consensus 15 FPf~-py~~Q~~~M~~v~~~~~~~~~~~~esptgtgktl~~l~~~l~~~ 62 (929)
+.|. |+|.|.+.+..+ .+|+++|+.+|||+|||++++.+++.++
T Consensus 32 ~g~~~~~~~Q~~~i~~~----~~~~~~li~~~TGsGKT~~~~~~~~~~~ 76 (220)
T 1t6n_A 32 CGFEHPSEVQHECIPQA----ILGMDVLCQAKSGMGKTAVFVLATLQQL 76 (220)
T ss_dssp TTCCCCCHHHHHHHHHH----HTTCCEEEECCTTSCHHHHHHHHHHHHC
T ss_pred CCCCCCCHHHHHHHHHH----hCCCCEEEECCCCCchhhhhhHHHHHhh
Confidence 4465 999999987754 4578999999999999999999988765
No 45
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=97.48 E-value=0.00068 Score=77.36 Aligned_cols=40 Identities=25% Similarity=0.175 Sum_probs=33.6
Q ss_pred CCCCHHHHHHHHHHHHHHHcCCceeeeCCCCCcchHHHHHHHHHh
Q 002378 17 YKPYSIQTDFMKALYCSLENGGVSMLESPTGTGKTLSIICSALQW 61 (929)
Q Consensus 17 f~py~~Q~~~M~~v~~~~~~~~~~~~esptgtgktl~~l~~~l~~ 61 (929)
|+|||.|.+.+..++. + ++|+.+|||+|||++++..++..
T Consensus 8 ~~l~~~Q~~~i~~~~~----~-~~ll~~~tG~GKT~~~~~~~~~~ 47 (494)
T 1wp9_A 8 IQPRIYQEVIYAKCKE----T-NCLIVLPTGLGKTLIAMMIAEYR 47 (494)
T ss_dssp HCCCHHHHHHHHHGGG----S-CEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHhh----C-CEEEEcCCCCCHHHHHHHHHHHH
Confidence 6799999999876544 4 99999999999999988776654
No 46
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=97.47 E-value=8.6e-05 Score=75.54 Aligned_cols=42 Identities=26% Similarity=0.291 Sum_probs=36.5
Q ss_pred CCCHHHHHHHHHHHHHHHcCCceeeeCCCCCcchHHHHHHHHHhHH
Q 002378 18 KPYSIQTDFMKALYCSLENGGVSMLESPTGTGKTLSIICSALQWVV 63 (929)
Q Consensus 18 ~py~~Q~~~M~~v~~~~~~~~~~~~esptgtgktl~~l~~~l~~~~ 63 (929)
.|+|.|.+.+. .+.+|+++++.+|||||||++++.+++.++.
T Consensus 23 ~~~~~Q~~~i~----~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~ 64 (207)
T 2gxq_A 23 TPTPIQAAALP----LALEGKDLIGQARTGTGKTLAFALPIAERLA 64 (207)
T ss_dssp SCCHHHHHHHH----HHHTTCCEEEECCTTSCHHHHHHHHHHHHCC
T ss_pred CCCHHHHHHHH----HHcCCCCEEEECCCCChHHHHHHHHHHHHHh
Confidence 59999999876 4556899999999999999999999887764
No 47
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=97.46 E-value=6e-05 Score=77.77 Aligned_cols=42 Identities=29% Similarity=0.359 Sum_probs=36.4
Q ss_pred CCCHHHHHHHHHHHHHHHcCCceeeeCCCCCcchHHHHHHHHHhHH
Q 002378 18 KPYSIQTDFMKALYCSLENGGVSMLESPTGTGKTLSIICSALQWVV 63 (929)
Q Consensus 18 ~py~~Q~~~M~~v~~~~~~~~~~~~esptgtgktl~~l~~~l~~~~ 63 (929)
.|+|.|.+.+..+ .+|+++|+.+|||+|||++++.+++..+.
T Consensus 26 ~~~~~Q~~~i~~~----~~~~~~lv~a~TGsGKT~~~~~~~l~~l~ 67 (219)
T 1q0u_A 26 KPTEIQERIIPGA----LRGESMVGQSQTGTGKTHAYLLPIMEKIK 67 (219)
T ss_dssp SCCHHHHHHHHHH----HHTCCEEEECCSSHHHHHHHHHHHHHHCC
T ss_pred CCCHHHHHHHHHH----hCCCCEEEECCCCChHHHHHHHHHHHHHH
Confidence 5999999998754 46799999999999999999999887753
No 48
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=97.45 E-value=0.0001 Score=75.25 Aligned_cols=48 Identities=21% Similarity=0.244 Sum_probs=40.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHcCCceeeeCCCCCcchHHHHHHHHHhHHH
Q 002378 13 PAFPYKPYSIQTDFMKALYCSLENGGVSMLESPTGTGKTLSIICSALQWVVD 64 (929)
Q Consensus 13 ~~FPf~py~~Q~~~M~~v~~~~~~~~~~~~esptgtgktl~~l~~~l~~~~~ 64 (929)
..+.++|+|.|.+.+..++ +++++|+.+|||+|||++++.+++.++..
T Consensus 28 ~~~~~~l~~~Q~~~i~~~~----~~~~~li~~~tGsGKT~~~~~~~~~~~~~ 75 (216)
T 3b6e_A 28 PEPELQLRPYQMEVAQPAL----EGKNIIICLPTGSGKTRVAVYIAKDHLDK 75 (216)
T ss_dssp CSCCCCCCHHHHHHHHHHH----TTCCEEEECSCHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCchHHHHHHHHHHh----cCCCEEEEcCCCCCHHHHHHHHHHHHHhh
Confidence 4456789999999987654 57999999999999999999999887764
No 49
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=97.44 E-value=6.1e-05 Score=78.94 Aligned_cols=43 Identities=28% Similarity=0.350 Sum_probs=37.1
Q ss_pred CCC-CCHHHHHHHHHHHHHHHcCCceeeeCCCCCcchHHHHHHHHHhH
Q 002378 16 PYK-PYSIQTDFMKALYCSLENGGVSMLESPTGTGKTLSIICSALQWV 62 (929)
Q Consensus 16 Pf~-py~~Q~~~M~~v~~~~~~~~~~~~esptgtgktl~~l~~~l~~~ 62 (929)
.|. |+|+|.+.+.. +.+|+++|+.+|||||||++++.+++.++
T Consensus 49 g~~~~~~~Q~~ai~~----i~~~~~~li~apTGsGKT~~~~l~~l~~l 92 (237)
T 3bor_A 49 GFEKPSAIQQRAIIP----CIKGYDVIAQAQSGTGKTATFAISILQQL 92 (237)
T ss_dssp TCCSCCHHHHHHHHH----HHTTCCEEECCCSSHHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHH----HhCCCCEEEECCCCCcHHHHHHHHHHHHH
Confidence 466 99999988774 55789999999999999999999988765
No 50
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=97.42 E-value=0.00013 Score=77.83 Aligned_cols=42 Identities=29% Similarity=0.427 Sum_probs=36.9
Q ss_pred CCHHHHHHHHHHHHHHHcCCceeeeCCCCCcchHHHHHHHHHhHHH
Q 002378 19 PYSIQTDFMKALYCSLENGGVSMLESPTGTGKTLSIICSALQWVVD 64 (929)
Q Consensus 19 py~~Q~~~M~~v~~~~~~~~~~~~esptgtgktl~~l~~~l~~~~~ 64 (929)
|+|+|.+.+..+ ..|+++|+.+|||||||++++.+++..+..
T Consensus 77 ~~~~Q~~~i~~~----~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~ 118 (262)
T 3ly5_A 77 MTEIQHKSIRPL----LEGRDLLAAAKTGSGKTLAFLIPAVELIVK 118 (262)
T ss_dssp CCHHHHHHHHHH----HHTCCCEECCCTTSCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHH----hCCCcEEEEccCCCCchHHHHHHHHHHHHh
Confidence 999999987754 457899999999999999999999988764
No 51
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=97.41 E-value=0.00042 Score=68.93 Aligned_cols=80 Identities=9% Similarity=0.120 Sum_probs=61.1
Q ss_pred cCCCeEEEccCHHHHHHHHHHHHhcChhHHhhcCccEEEcCC-CCchHHHHHHHHHHHHhccCCCCCCCCCCCCCcEEEE
Q 002378 684 VPEGIIVFFPSFEYVERVYGAWKSLGILDRIMKKKHVFREPR-GNTHVESVLKEYQKTIDTLSSRPKEDSTPLNGAMLLA 762 (929)
Q Consensus 684 vpgg~LVfFpSy~~l~~~~~~w~~~~~~~~l~~~K~if~E~~-~~~~~~~~l~~y~~~i~~~~~~~~~~~~~~~gaiL~a 762 (929)
.++.+|||+++-...+.+.+.+...++ .-.++-+. ...+...+++.|+. +.-.||+|
T Consensus 30 ~~~~~lVF~~~~~~~~~l~~~L~~~~~-------~~~~~hg~~~~~~r~~~~~~f~~---------------g~~~vLva 87 (172)
T 1t5i_A 30 EFNQVVIFVKSVQRCIALAQLLVEQNF-------PAIAIHRGMPQEERLSRYQQFKD---------------FQRRILVA 87 (172)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHHTTC-------CEEEECTTSCHHHHHHHHHHHHT---------------TSCSEEEE
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhcCC-------CEEEEECCCCHHHHHHHHHHHHC---------------CCCcEEEE
Confidence 346799999999999999998876542 22334332 23578889999986 45679988
Q ss_pred EecCccccccccCCCcceEEEEEccCC
Q 002378 763 VVGGKISEGINFSDGMGRCIVMVGLPY 789 (929)
Q Consensus 763 V~rGk~sEGIDf~d~~~r~ViivGlPf 789 (929)
+ ..+++|||+++ ++.||..++|.
T Consensus 88 T--~~~~~Gldi~~--~~~Vi~~d~p~ 110 (172)
T 1t5i_A 88 T--NLFGRGMDIER--VNIAFNYDMPE 110 (172)
T ss_dssp S--SCCSTTCCGGG--CSEEEESSCCS
T ss_pred C--CchhcCcchhh--CCEEEEECCCC
Confidence 8 89999999986 77899887763
No 52
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=97.38 E-value=0.00011 Score=80.00 Aligned_cols=41 Identities=27% Similarity=0.362 Sum_probs=35.1
Q ss_pred CCCHHHHHHHHHHHHHHHcC--CceeeeCCCCCcchHHHHHHHHHhH
Q 002378 18 KPYSIQTDFMKALYCSLENG--GVSMLESPTGTGKTLSIICSALQWV 62 (929)
Q Consensus 18 ~py~~Q~~~M~~v~~~~~~~--~~~~~esptgtgktl~~l~~~l~~~ 62 (929)
.|+++|...+. .+.+| ++.|+.+|||||||++|+.++|..+
T Consensus 114 ~pt~iQ~~ai~----~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l 156 (300)
T 3fmo_B 114 RPSKIQENALP----LMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQV 156 (300)
T ss_dssp SCCHHHHHHHH----HHTSSSCCCEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHH----HHHcCCCCeEEEECCCCCCccHHHHHHHHHhh
Confidence 39999998865 55565 9999999999999999999998764
No 53
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=97.35 E-value=0.0029 Score=77.13 Aligned_cols=45 Identities=33% Similarity=0.338 Sum_probs=37.1
Q ss_pred CCCC-CCCHHHHHHHHHHHHHHHcCCceeeeCCCCCcchHHHHHHHHHh
Q 002378 14 AFPY-KPYSIQTDFMKALYCSLENGGVSMLESPTGTGKTLSIICSALQW 61 (929)
Q Consensus 14 ~FPf-~py~~Q~~~M~~v~~~~~~~~~~~~esptgtgktl~~l~~~l~~ 61 (929)
.++| .|||+|.+.+..+ +.+++++|+.+|||+|||+++..+.+..
T Consensus 25 ~~g~~~l~~~Q~~~i~~~---~~~~~~~lv~apTGsGKT~~~~l~il~~ 70 (715)
T 2va8_A 25 KRGIKKLNPPQTEAVKKG---LLEGNRLLLTSPTGSGKTLIAEMGIISF 70 (715)
T ss_dssp TTSCCBCCHHHHHHHHTT---TTTTCCEEEECCTTSCHHHHHHHHHHHH
T ss_pred hCCCCCCCHHHHHHHHHH---hcCCCcEEEEcCCCCcHHHHHHHHHHHH
Confidence 3678 5999999987742 5569999999999999999988776644
No 54
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=97.28 E-value=0.0013 Score=67.77 Aligned_cols=80 Identities=19% Similarity=0.219 Sum_probs=61.1
Q ss_pred cCCCeEEEccCHHHHHHHHHHHHhcChhHHhhcCccEEEcCC-CCchHHHHHHHHHHHHhccCCCCCCCCCCCCCcEEEE
Q 002378 684 VPEGIIVFFPSFEYVERVYGAWKSLGILDRIMKKKHVFREPR-GNTHVESVLKEYQKTIDTLSSRPKEDSTPLNGAMLLA 762 (929)
Q Consensus 684 vpgg~LVfFpSy~~l~~~~~~w~~~~~~~~l~~~K~if~E~~-~~~~~~~~l~~y~~~i~~~~~~~~~~~~~~~gaiL~a 762 (929)
.++.+|||+++....+.+.+.+...++ .-..+-+. ...+.+.+++.|+. +.-.||+|
T Consensus 30 ~~~~~lVF~~~~~~~~~l~~~L~~~~~-------~~~~lhg~~~~~~r~~~~~~f~~---------------g~~~vlva 87 (212)
T 3eaq_A 30 SPDRAMVFTRTKAETEEIAQGLLRLGH-------PAQALHGDLSQGERERVLGAFRQ---------------GEVRVLVA 87 (212)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHHHTC-------CEEEECSSSCHHHHHHHHHHHHS---------------SSCCEEEE
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHcCC-------CEEEEECCCCHHHHHHHHHHHHC---------------CCCeEEEe
Confidence 478899999999999999998876532 22333332 23478889999976 45679999
Q ss_pred EecCccccccccCCCcceEEEEEccCC
Q 002378 763 VVGGKISEGINFSDGMGRCIVMVGLPY 789 (929)
Q Consensus 763 V~rGk~sEGIDf~d~~~r~ViivGlPf 789 (929)
+ .-+++|||+++ ++.||..++|.
T Consensus 88 T--~~~~~Gidi~~--v~~Vi~~~~p~ 110 (212)
T 3eaq_A 88 T--DVAARGLDIPQ--VDLVVHYRLPD 110 (212)
T ss_dssp C--TTTTCSSSCCC--BSEEEESSCCS
T ss_pred c--ChhhcCCCCcc--CcEEEECCCCc
Confidence 8 99999999986 77899888764
No 55
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=97.19 E-value=0.00032 Score=86.02 Aligned_cols=50 Identities=18% Similarity=0.222 Sum_probs=46.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHcC--CceeeeCCCCCcchHHHHHHHHHhHH
Q 002378 14 AFPYKPYSIQTDFMKALYCSLENG--GVSMLESPTGTGKTLSIICSALQWVV 63 (929)
Q Consensus 14 ~FPf~py~~Q~~~M~~v~~~~~~~--~~~~~esptgtgktl~~l~~~l~~~~ 63 (929)
.|||+|++.|.+.+..++..+..+ .+.|+.+|||+|||++++.+++..+.
T Consensus 364 ~lpf~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~ 415 (780)
T 1gm5_A 364 SLPFKLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYE 415 (780)
T ss_dssp HSSSCCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHH
T ss_pred hCCCCCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 589999999999999999999887 48999999999999999999998764
No 56
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=96.16 E-value=7.8e-05 Score=74.02 Aligned_cols=79 Identities=19% Similarity=0.238 Sum_probs=58.5
Q ss_pred CCCeEEEccCHHHHHHHHHHHHhcChhHHhhcCccEEEcC-CCCchHHHHHHHHHHHHhccCCCCCCCCCCCCCcEEEEE
Q 002378 685 PEGIIVFFPSFEYVERVYGAWKSLGILDRIMKKKHVFREP-RGNTHVESVLKEYQKTIDTLSSRPKEDSTPLNGAMLLAV 763 (929)
Q Consensus 685 pgg~LVfFpSy~~l~~~~~~w~~~~~~~~l~~~K~if~E~-~~~~~~~~~l~~y~~~i~~~~~~~~~~~~~~~gaiL~aV 763 (929)
++.+|||+++-...+.+.+.++..++ ...++-+ ....+...+++.|+. +.-.||+|+
T Consensus 30 ~~~~iVF~~~~~~~~~l~~~L~~~~~-------~~~~~~g~~~~~~r~~~~~~f~~---------------g~~~vLvaT 87 (170)
T 2yjt_D 30 ATRSIVFVRKRERVHELANWLREAGI-------NNCYLEGEMVQGKRNEAIKRLTE---------------GRVNVLVAT 87 (170)
Confidence 45799999999999999988876532 1122222 223467788888876 345688888
Q ss_pred ecCccccccccCCCcceEEEEEccCC
Q 002378 764 VGGKISEGINFSDGMGRCIVMVGLPY 789 (929)
Q Consensus 764 ~rGk~sEGIDf~d~~~r~ViivGlPf 789 (929)
..+++|||+++ ++.||..++|.
T Consensus 88 --~~~~~Gid~~~--~~~Vi~~~~p~ 109 (170)
T 2yjt_D 88 --DVAARGIDIPD--VSHVFNFDMPR 109 (170)
Confidence 89999999998 77899888774
No 57
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=97.09 E-value=0.00041 Score=79.97 Aligned_cols=77 Identities=9% Similarity=0.094 Sum_probs=57.6
Q ss_pred cCCCeEEEccCHHHHHHHHHHHHhcChhHHhhcCccEEEcCCCCchHHHHHHHHHHHHhccCCCCCCCCCCCCCcEEEEE
Q 002378 684 VPEGIIVFFPSFEYVERVYGAWKSLGILDRIMKKKHVFREPRGNTHVESVLKEYQKTIDTLSSRPKEDSTPLNGAMLLAV 763 (929)
Q Consensus 684 vpgg~LVfFpSy~~l~~~~~~w~~~~~~~~l~~~K~if~E~~~~~~~~~~l~~y~~~i~~~~~~~~~~~~~~~gaiL~aV 763 (929)
.++.+|||++|-...+.+++.++..++ +-..+- +...+.+++.|++ +.-.||+|+
T Consensus 187 ~~~~~lVF~~s~~~a~~l~~~L~~~g~-------~~~~lh---~~~~~~~~~~f~~---------------g~~~vLVaT 241 (451)
T 2jlq_A 187 YQGKTVWFVPSIKAGNDIANCLRKSGK-------RVIQLS---RKTFDTEYPKTKL---------------TDWDFVVTT 241 (451)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHTTTC-------CEEEEC---TTTHHHHGGGGGS---------------SCCSEEEEC
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHcCC-------eEEECC---HHHHHHHHHhhcc---------------CCceEEEEC
Confidence 467899999999999999999876542 112222 2344667777764 467899998
Q ss_pred ecCccccccccCCCcceEEEEEccCCC
Q 002378 764 VGGKISEGINFSDGMGRCIVMVGLPYP 790 (929)
Q Consensus 764 ~rGk~sEGIDf~d~~~r~ViivGlPfp 790 (929)
.-+.+|||+++ +.||-.|+++.
T Consensus 242 --~v~~~GiDip~---~~VI~~~~~~~ 263 (451)
T 2jlq_A 242 --DISEMGANFRA---GRVIDPRRCLK 263 (451)
T ss_dssp --GGGGSSCCCCC---SEEEECCEEEE
T ss_pred --CHHHhCcCCCC---CEEEECCCccc
Confidence 89999999998 88998776543
No 58
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=96.96 E-value=0.00044 Score=82.48 Aligned_cols=41 Identities=29% Similarity=0.371 Sum_probs=35.7
Q ss_pred CCCC-CCHHHHHHHHHHHHHHHcCCceeeeCCCCCcchHHHHHHHH
Q 002378 15 FPYK-PYSIQTDFMKALYCSLENGGVSMLESPTGTGKTLSIICSAL 59 (929)
Q Consensus 15 FPf~-py~~Q~~~M~~v~~~~~~~~~~~~esptgtgktl~~l~~~l 59 (929)
|.|+ |+|.|.+.+.. +.+|+++|+.+|||+|||||++.++|
T Consensus 40 fg~~~~rp~Q~~~i~~----il~g~d~lv~~pTGsGKTl~~~lpal 81 (591)
T 2v1x_A 40 FKLEKFRPLQLETINV----TMAGKEVFLVMPTGGGKSLCYQLPAL 81 (591)
T ss_dssp SCCCSCCTTHHHHHHH----HHTTCCEEEECCTTSCTTHHHHHHHH
T ss_pred hCCCCCCHHHHHHHHH----HHcCCCEEEEECCCChHHHHHHHHHH
Confidence 6675 99999998774 55689999999999999999999886
No 59
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=96.96 E-value=0.00072 Score=86.69 Aligned_cols=48 Identities=19% Similarity=0.225 Sum_probs=44.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHcCC--ceeeeCCCCCcchHHHHHHHHHh
Q 002378 14 AFPYKPYSIQTDFMKALYCSLENGG--VSMLESPTGTGKTLSIICSALQW 61 (929)
Q Consensus 14 ~FPf~py~~Q~~~M~~v~~~~~~~~--~~~~esptgtgktl~~l~~~l~~ 61 (929)
.|||+|+|.|...+..+...+..|+ ++|+.+|||+|||++++.+++..
T Consensus 599 ~f~~~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~ 648 (1151)
T 2eyq_A 599 SFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLA 648 (1151)
T ss_dssp TCCSCCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHH
T ss_pred hCCCCCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHH
Confidence 5899999999999999999999887 99999999999999998887764
No 60
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=96.92 E-value=0.0096 Score=64.67 Aligned_cols=79 Identities=16% Similarity=0.210 Sum_probs=61.6
Q ss_pred CCCeEEEccCHHHHHHHHHHHHhcChhHHhhcCccEEEcC-CCCchHHHHHHHHHHHHhccCCCCCCCCCCCCCcEEEEE
Q 002378 685 PEGIIVFFPSFEYVERVYGAWKSLGILDRIMKKKHVFREP-RGNTHVESVLKEYQKTIDTLSSRPKEDSTPLNGAMLLAV 763 (929)
Q Consensus 685 pgg~LVfFpSy~~l~~~~~~w~~~~~~~~l~~~K~if~E~-~~~~~~~~~l~~y~~~i~~~~~~~~~~~~~~~gaiL~aV 763 (929)
++.+|||+++-...+.+.+.+...++ .-..+-+ ....+.+.+++.|+. +...||+|+
T Consensus 28 ~~~~LVF~~t~~~~~~l~~~L~~~g~-------~~~~lhg~l~~~~r~~~~~~f~~---------------g~~~vLVaT 85 (300)
T 3i32_A 28 PDRAMVFTRTKAETEEIAQGLLRLGH-------PAQALHGDMSQGERERVMGAFRQ---------------GEVRVLVAT 85 (300)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHTTTC-------CEEEECSCCCTHHHHHHHHHHHH---------------TSCCEEEEC
T ss_pred CCCEEEEECCHHHHHHHHHHHHhCCC-------CEEEEeCCCCHHHHHHHHHHhhc---------------CCceEEEEe
Confidence 78999999999999999998876542 2233333 234578899999987 456799998
Q ss_pred ecCccccccccCCCcceEEEEEccCC
Q 002378 764 VGGKISEGINFSDGMGRCIVMVGLPY 789 (929)
Q Consensus 764 ~rGk~sEGIDf~d~~~r~ViivGlPf 789 (929)
.-+.+|||+++ ++.||..++|.
T Consensus 86 --~va~~Gidi~~--v~~VI~~d~p~ 107 (300)
T 3i32_A 86 --DVAARGLDIPQ--VDLVVHYRMPD 107 (300)
T ss_dssp --STTTCSTTCCC--CSEEEESSCCS
T ss_pred --chhhcCccccc--eeEEEEcCCCC
Confidence 99999999986 67888888765
No 61
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=96.89 E-value=0.00041 Score=80.35 Aligned_cols=80 Identities=10% Similarity=0.160 Sum_probs=0.0
Q ss_pred CCCeEEEccCHHHHHHHHHHHHhcChhHHhhcCccEEEcCCCCchHHHHHHHHHHHHhccCCCCCCCCCCCCCcEEEEEe
Q 002378 685 PEGIIVFFPSFEYVERVYGAWKSLGILDRIMKKKHVFREPRGNTHVESVLKEYQKTIDTLSSRPKEDSTPLNGAMLLAVV 764 (929)
Q Consensus 685 pgg~LVfFpSy~~l~~~~~~w~~~~~~~~l~~~K~if~E~~~~~~~~~~l~~y~~~i~~~~~~~~~~~~~~~gaiL~aV~ 764 (929)
.+.+|||++|-...+.++..+...++- -.++.-.....+...+++.|++ +.-.||+|+
T Consensus 333 ~~~~lvF~~s~~~~~~l~~~L~~~~~~------v~~lh~~~~~~~R~~~~~~f~~---------------g~~~iLv~T- 390 (479)
T 3fmp_B 333 IAQAMIFCHTRKTASWLAAELSKEGHQ------VALLSGEMMVEQRAAVIERFRE---------------GKEKVLVTT- 390 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCceEEEeCcHHHHHHHHHHHHhCCcc------EEEecCCCCHHHHHHHHHHHHc---------------CCCcEEEEc-
Confidence 357999999999988888877654320 1122222233467788999976 456789888
Q ss_pred cCccccccccCCCcceEEEEEccCC
Q 002378 765 GGKISEGINFSDGMGRCIVMVGLPY 789 (929)
Q Consensus 765 rGk~sEGIDf~d~~~r~ViivGlPf 789 (929)
.-+++||||++ ++.||..++|.
T Consensus 391 -~~~~~GlDip~--v~~VI~~d~p~ 412 (479)
T 3fmp_B 391 -NVCARGIDVEQ--VSVVINFDLPV 412 (479)
T ss_dssp -------------------------
T ss_pred -cccccCCcccc--CCEEEEecCCC
Confidence 89999999998 66788777765
No 62
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=96.78 E-value=0.0044 Score=70.88 Aligned_cols=77 Identities=12% Similarity=0.106 Sum_probs=59.6
Q ss_pred cCCCeEEEccCHHHHHHHHHHHHhcChhHHhhcCccEEEcCCCCchHHHHHHHHHHHHhccCCCCCCCCCCCCCcEEEEE
Q 002378 684 VPEGIIVFFPSFEYVERVYGAWKSLGILDRIMKKKHVFREPRGNTHVESVLKEYQKTIDTLSSRPKEDSTPLNGAMLLAV 763 (929)
Q Consensus 684 vpgg~LVfFpSy~~l~~~~~~w~~~~~~~~l~~~K~if~E~~~~~~~~~~l~~y~~~i~~~~~~~~~~~~~~~gaiL~aV 763 (929)
.+|.+|||+|+-...+.+++.++..++ +-..+-+ ...+.+++.|++ +.-.||+|+
T Consensus 170 ~~~~~lVF~~~~~~~~~l~~~L~~~~~-------~v~~lhg---~~r~~~~~~f~~---------------g~~~vLVaT 224 (431)
T 2v6i_A 170 FDGRTVWFVHSIKQGAEIGTCLQKAGK-------KVLYLNR---KTFESEYPKCKS---------------EKWDFVITT 224 (431)
T ss_dssp CSSCEEEECSSHHHHHHHHHHHHHTTC-------CEEEEST---TTHHHHTTHHHH---------------SCCSEEEEC
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHHcCC-------eEEEeCC---ccHHHHHHhhcC---------------CCCeEEEEC
Confidence 478899999999999999998876531 2233333 367889999987 467899999
Q ss_pred ecCccccccccCCCcceEEEEEccCCC
Q 002378 764 VGGKISEGINFSDGMGRCIVMVGLPYP 790 (929)
Q Consensus 764 ~rGk~sEGIDf~d~~~r~ViivGlPfp 790 (929)
.-+.+|||++ ...||..|.++-
T Consensus 225 --~v~e~GiDip---~~~VI~~g~~~~ 246 (431)
T 2v6i_A 225 --DISEMGANFK---ADRVIDPRKTIK 246 (431)
T ss_dssp --GGGGTSCCCC---CSEEEECCEEEE
T ss_pred --chHHcCcccC---CcEEEecCcccc
Confidence 8999999997 567888776664
No 63
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=96.74 E-value=0.0011 Score=80.68 Aligned_cols=96 Identities=10% Similarity=0.069 Sum_probs=63.2
Q ss_pred HHHHHHHhhcc--CCCeEEEccCHHHHHHHHHHHHhcChhHHhhcCccEEEcC---------CCCchHHHHHHHHHHHHh
Q 002378 674 GLLLCNLVSVV--PEGIIVFFPSFEYVERVYGAWKSLGILDRIMKKKHVFREP---------RGNTHVESVLKEYQKTID 742 (929)
Q Consensus 674 ~~~i~~~~~~v--pgg~LVfFpSy~~l~~~~~~w~~~~~~~~l~~~K~if~E~---------~~~~~~~~~l~~y~~~i~ 742 (929)
...|....... ++.+|||+++-...+.+.+.+.....+... ..+..++-+ ....+...+++.|++
T Consensus 387 ~~~L~~~~~~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~-g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~--- 462 (699)
T 4gl2_A 387 RNTIMEQYTRTEESARGIIFTKTRQSAYALSQWITENEKFAEV-GVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRT--- 462 (699)
T ss_dssp HHHHHHHHHHSSSCCCEEEECSCHHHHHHHHHHHHSSCSCC------CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---
T ss_pred HHHHHHHHhcCCCCCcEEEEECcHHHHHHHHHHHHhCcccccc-CcceEEEECCCCccCCCCCCHHHHHHHHHHHhc---
Confidence 33444433333 578999999999999999988764111100 012233333 223478889999976
Q ss_pred ccCCCCCCCCCCCCCcEEEEEecCccccccccCCCcceEEEEEccCC
Q 002378 743 TLSSRPKEDSTPLNGAMLLAVVGGKISEGINFSDGMGRCIVMVGLPY 789 (929)
Q Consensus 743 ~~~~~~~~~~~~~~gaiL~aV~rGk~sEGIDf~d~~~r~ViivGlPf 789 (929)
+...||+|+ .-++||||+++ ++.||..++|.
T Consensus 463 ------------g~~~VLVaT--~~~~~GIDip~--v~~VI~~d~p~ 493 (699)
T 4gl2_A 463 ------------GKINLLIAT--TVAEEGLDIKE--CNIVIRYGLVT 493 (699)
T ss_dssp ---------------CCSEEE--CSCCTTSCCCS--CCCCEEESCCC
T ss_pred ------------CCCcEEEEc--cccccCCcccc--CCEEEEeCCCC
Confidence 356799999 89999999995 78899888774
No 64
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=96.73 E-value=0.00037 Score=80.76 Aligned_cols=40 Identities=25% Similarity=0.368 Sum_probs=29.0
Q ss_pred CCHHHHHHHHHHHHHHHcCCceeeeCCCCCcchHHHHHHHHH
Q 002378 19 PYSIQTDFMKALYCSLENGGVSMLESPTGTGKTLSIICSALQ 60 (929)
Q Consensus 19 py~~Q~~~M~~v~~~~~~~~~~~~esptgtgktl~~l~~~l~ 60 (929)
|+|+|...+..++.. .++++|+.+|||+|||++++.+++.
T Consensus 115 p~~~Q~~ai~~il~~--~~~~~l~~a~TGsGKT~~~~l~il~ 154 (479)
T 3fmp_B 115 PSKIQENALPLMLAE--PPQNLIAQSQSGTGKTAAFVLAMLS 154 (479)
T ss_dssp CCHHHHHHHHHHTSB--SCCEEEEECCSSSSHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHcC--CCCcEEEEcCCCCchhHHHHHHHHH
Confidence 788888876644331 2388888888888888888776654
No 65
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=96.71 E-value=0.0062 Score=74.11 Aligned_cols=43 Identities=21% Similarity=0.248 Sum_probs=34.3
Q ss_pred CCCC-CCCHHHHHHHHHHHHHHHcCCceeeeCCCCCcchHHHHHHHHH
Q 002378 14 AFPY-KPYSIQTDFMKALYCSLENGGVSMLESPTGTGKTLSIICSALQ 60 (929)
Q Consensus 14 ~FPf-~py~~Q~~~M~~v~~~~~~~~~~~~esptgtgktl~~l~~~l~ 60 (929)
.++| .|||+|.+.+.. +.+++++|+.+|||+|||+++..+.+.
T Consensus 20 ~~g~~~l~~~Q~~~i~~----i~~~~~~lv~apTGsGKT~~~~l~il~ 63 (702)
T 2p6r_A 20 EEGIEELFPPQAEAVEK----VFSGKNLLLAMPTAAGKTLLAEMAMVR 63 (702)
T ss_dssp CC---CCCCCCHHHHHH----HTTCSCEEEECSSHHHHHHHHHHHHHH
T ss_pred hCCCCCCCHHHHHHHHH----HhCCCcEEEEcCCccHHHHHHHHHHHH
Confidence 3678 599999988775 557999999999999999988776653
No 66
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=96.67 E-value=0.00073 Score=79.43 Aligned_cols=41 Identities=29% Similarity=0.432 Sum_probs=35.5
Q ss_pred CCCC-CCHHHHHHHHHHHHHHHcCCceeeeCCCCCcchHHHHHHHH
Q 002378 15 FPYK-PYSIQTDFMKALYCSLENGGVSMLESPTGTGKTLSIICSAL 59 (929)
Q Consensus 15 FPf~-py~~Q~~~M~~v~~~~~~~~~~~~esptgtgktl~~l~~~l 59 (929)
|.|+ |+|.|.+.+.. +.+|+++|+.+|||+|||++++.++|
T Consensus 21 ~g~~~~r~~Q~~~i~~----il~g~d~lv~apTGsGKTl~~~lp~l 62 (523)
T 1oyw_A 21 FGYQQFRPGQEEIIDT----VLSGRDCLVVMPTGGGKSLCYQIPAL 62 (523)
T ss_dssp TCCSSCCTTHHHHHHH----HHTTCCEEEECSCHHHHHHHHHHHHH
T ss_pred hCCCCCCHHHHHHHHH----HHcCCCEEEECCCCcHHHHHHHHHHH
Confidence 5664 89999988774 55789999999999999999998887
No 67
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=96.58 E-value=0.0018 Score=67.80 Aligned_cols=41 Identities=17% Similarity=0.131 Sum_probs=33.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHcCCceeeeCCCCCcchHHHHHHH
Q 002378 14 AFPYKPYSIQTDFMKALYCSLENGGVSMLESPTGTGKTLSIICSA 58 (929)
Q Consensus 14 ~FPf~py~~Q~~~M~~v~~~~~~~~~~~~esptgtgktl~~l~~~ 58 (929)
.|+++|++.|.+.+.. +.++..+|+.+|||+|||+..+..+
T Consensus 89 ~~~~~l~~~Q~~ai~~----~~~~~~~ll~~~tG~GKT~~a~~~~ 129 (237)
T 2fz4_A 89 DAEISLRDYQEKALER----WLVDKRGCIVLPTGSGKTHVAMAAI 129 (237)
T ss_dssp CCCCCCCHHHHHHHHH----HTTTSEEEEEESSSTTHHHHHHHHH
T ss_pred cCCCCcCHHHHHHHHH----HHhCCCEEEEeCCCCCHHHHHHHHH
Confidence 3556899999998775 4456779999999999999876654
No 68
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=96.55 E-value=0.0016 Score=83.07 Aligned_cols=44 Identities=27% Similarity=0.267 Sum_probs=38.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHHcCCceeeeCCCCCcchHHHHHHHHHhH
Q 002378 15 FPYKPYSIQTDFMKALYCSLENGGVSMLESPTGTGKTLSIICSALQWV 62 (929)
Q Consensus 15 FPf~py~~Q~~~M~~v~~~~~~~~~~~~esptgtgktl~~l~~~l~~~ 62 (929)
|+|+|+|+|...+. .+.+|+++|+.+|||+|||+++|.+++..+
T Consensus 75 ~gf~pt~iQ~~ai~----~il~g~dvlv~ApTGSGKTl~~l~~il~~~ 118 (1104)
T 4ddu_A 75 FGKDLTGYQRLWAK----RIVQGKSFTMVAPTGVGKTTFGMMTALWLA 118 (1104)
T ss_dssp SSSCCCHHHHHHHH----HHTTTCCEEECCSTTCCHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHH----HHHcCCCEEEEeCCCCcHHHHHHHHHHHHH
Confidence 78899999998876 455689999999999999999998888776
No 69
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=96.54 E-value=0.004 Score=76.55 Aligned_cols=107 Identities=7% Similarity=0.053 Sum_probs=63.3
Q ss_pred hHHHHHHHHHHHHHhhc-cCCCeEEEccCHHHHHHHHHHHHhcChhHHh------hcCccEEEcCC-CCchHHHHHHHHH
Q 002378 667 SAMIEELGLLLCNLVSV-VPEGIIVFFPSFEYVERVYGAWKSLGILDRI------MKKKHVFREPR-GNTHVESVLKEYQ 738 (929)
Q Consensus 667 ~~~~~~l~~~i~~~~~~-vpgg~LVfFpSy~~l~~~~~~w~~~~~~~~l------~~~K~if~E~~-~~~~~~~~l~~y~ 738 (929)
.++...+...+..+... .+|.+|||+|+....+.+.+.+.... ..+ ....-...-+. ...+...+++.|.
T Consensus 284 ~~~~~~~l~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~--~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~ 361 (773)
T 2xau_A 284 RDYLDSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEG--DQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAP 361 (773)
T ss_dssp SCHHHHHHHHHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHH--HHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCC
T ss_pred hhHHHHHHHHHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHH--HhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcc
Confidence 44555666666666554 47889999999999999998876420 011 01111222221 1123344444332
Q ss_pred HHHhccCCCCCCCCCCCCCcEEEEEecCccccccccCCCcceEEEEEccCC
Q 002378 739 KTIDTLSSRPKEDSTPLNGAMLLAVVGGKISEGINFSDGMGRCIVMVGLPY 789 (929)
Q Consensus 739 ~~i~~~~~~~~~~~~~~~gaiL~aV~rGk~sEGIDf~d~~~r~ViivGlPf 789 (929)
.. . +..+...||+|+ .-+..|||+++ .+.||-.|+|-
T Consensus 362 ~~-~---------~~~g~~kVlVAT--~iae~GidIp~--v~~VId~g~~k 398 (773)
T 2xau_A 362 ES-H---------NGRPGRKVVIST--NIAETSLTIDG--IVYVVDPGFSK 398 (773)
T ss_dssp CC-S---------SSSCCEEEEEEC--THHHHTCCCTT--EEEEEECSEEE
T ss_pred cc-c---------CCCCceEEEEeC--cHHHhCcCcCC--eEEEEeCCCcc
Confidence 00 0 001345777777 89999999996 78899888864
No 70
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=96.47 E-value=0.0014 Score=70.25 Aligned_cols=42 Identities=21% Similarity=0.206 Sum_probs=34.9
Q ss_pred CCCCHHHHHHHHHHHHHHHcCCceeeeCCCCCcchHHHHHHHHHhH
Q 002378 17 YKPYSIQTDFMKALYCSLENGGVSMLESPTGTGKTLSIICSALQWV 62 (929)
Q Consensus 17 f~py~~Q~~~M~~v~~~~~~~~~~~~esptgtgktl~~l~~~l~~~ 62 (929)
+.|+|.|.+.+..++. +..+|+.+|||+|||++++..++..+
T Consensus 112 ~~l~~~Q~~ai~~~l~----~~~~ll~~~tGsGKT~~~~~~~~~~~ 153 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLV----NRRRILNLPTSAGRSLIQALLARYYL 153 (282)
T ss_dssp CCCCHHHHHHHHHHHH----HSEEEECCCTTSCHHHHHHHHHHHHH
T ss_pred cCccHHHHHHHHHHHh----cCCeEEEcCCCCCcHHHHHHHHHHHH
Confidence 7899999999887665 36789999999999999977666544
No 71
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=96.43 E-value=0.011 Score=70.41 Aligned_cols=103 Identities=12% Similarity=0.096 Sum_probs=64.2
Q ss_pred HHHHHHHHHHhhc-cC-CCeEEEccCHHHHHHHHHHHHhcChhHHhhcCc-cEEEcCCCCchHHHHHHHHHHHHhccCCC
Q 002378 671 EELGLLLCNLVSV-VP-EGIIVFFPSFEYVERVYGAWKSLGILDRIMKKK-HVFREPRGNTHVESVLKEYQKTIDTLSSR 747 (929)
Q Consensus 671 ~~l~~~i~~~~~~-vp-gg~LVfFpSy~~l~~~~~~w~~~~~~~~l~~~K-~if~E~~~~~~~~~~l~~y~~~i~~~~~~ 747 (929)
..++..|..++.. .+ +.+|||.++-...+.+++.+...+.-..-.... -..+-+......+.++++|++.
T Consensus 423 ~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~~r~~~l~~F~~~------- 495 (590)
T 3h1t_A 423 DAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGKIGKGHLSRFQEL------- 495 (590)
T ss_dssp HHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHHHHHHHHHHHHCT-------
T ss_pred HHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCChHHHHHHHHHHhCC-------
Confidence 3344445444443 23 569999999999999999887654311100111 1233333222378899999860
Q ss_pred CCCCCCCCCCcEEEEEecCccccccccCCCcceEEEEEccCC
Q 002378 748 PKEDSTPLNGAMLLAVVGGKISEGINFSDGMGRCIVMVGLPY 789 (929)
Q Consensus 748 ~~~~~~~~~gaiL~aV~rGk~sEGIDf~d~~~r~ViivGlPf 789 (929)
......||+++ .-+++|||+++ +.+||+...|.
T Consensus 496 -----~~~~~~ilvtt--~~l~~GiDip~--v~~Vi~~~~~~ 528 (590)
T 3h1t_A 496 -----ETSTPVILTTS--QLLTTGVDAPT--CKNVVLARVVN 528 (590)
T ss_dssp -----TCCCCCEEEES--STTTTTCCCTT--EEEEEEESCCC
T ss_pred -----CCCCCEEEEEC--ChhhcCccchh--eeEEEEEecCC
Confidence 11123477777 88999999997 78888876653
No 72
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=96.42 E-value=0.0024 Score=73.70 Aligned_cols=75 Identities=17% Similarity=0.228 Sum_probs=56.1
Q ss_pred cCCCeEEEccCHHHHHHHHHHHHhcChhHHhhcCccEEEcCCCCchHHHHHHHHHHHHhccCCCCCCCCCCCCCcEEEEE
Q 002378 684 VPEGIIVFFPSFEYVERVYGAWKSLGILDRIMKKKHVFREPRGNTHVESVLKEYQKTIDTLSSRPKEDSTPLNGAMLLAV 763 (929)
Q Consensus 684 vpgg~LVfFpSy~~l~~~~~~w~~~~~~~~l~~~K~if~E~~~~~~~~~~l~~y~~~i~~~~~~~~~~~~~~~gaiL~aV 763 (929)
.++.+|||.++-..++.+.+.+... ++.-.....+.+.+++.|++ +...||+|+
T Consensus 348 ~~~k~lvF~~~~~~~~~l~~~l~~~-----------~~~g~~~~~~R~~~~~~F~~---------------g~~~vLv~T 401 (472)
T 2fwr_A 348 RKDKIIIFTRHNELVYRISKVFLIP-----------AITHRTSREEREEILEGFRT---------------GRFRAIVSS 401 (472)
T ss_dssp SSSCBCCBCSCHHHHHHHHHHTTCC-----------BCCSSSCSHHHHTHHHHHHH---------------SSCSBCBCS
T ss_pred CCCcEEEEECCHHHHHHHHHHhCcc-----------eeeCCCCHHHHHHHHHHHhC---------------CCCCEEEEc
Confidence 3578999999999998888765311 22222234578899999987 456788887
Q ss_pred ecCccccccccCCCcceEEEEEccC
Q 002378 764 VGGKISEGINFSDGMGRCIVMVGLP 788 (929)
Q Consensus 764 ~rGk~sEGIDf~d~~~r~ViivGlP 788 (929)
..+.+|||+++ +..||+.+.|
T Consensus 402 --~~~~~Gldlp~--~~~Vi~~~~~ 422 (472)
T 2fwr_A 402 --QVLDEGIDVPD--ANVGVIMSGS 422 (472)
T ss_dssp --SCCCSSSCSCC--BSEEEEECCS
T ss_pred --CchhcCccccc--CcEEEEECCC
Confidence 89999999987 6788887755
No 73
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=96.42 E-value=0.0021 Score=74.90 Aligned_cols=91 Identities=15% Similarity=0.128 Sum_probs=63.9
Q ss_pred HHHHHHHHhhccCCCeEEEccCHHHHHHHHHHHHhcChhHHhhcCccEEEcCCC-CchHHHHHHHHHHHHhccCCCCCCC
Q 002378 673 LGLLLCNLVSVVPEGIIVFFPSFEYVERVYGAWKSLGILDRIMKKKHVFREPRG-NTHVESVLKEYQKTIDTLSSRPKED 751 (929)
Q Consensus 673 l~~~i~~~~~~vpgg~LVfFpSy~~l~~~~~~w~~~~~~~~l~~~K~if~E~~~-~~~~~~~l~~y~~~i~~~~~~~~~~ 751 (929)
+...|.+.+. .+++.+|+|.+...++.+.+.+...+. +-.++-+.. ..+.+.+++.|++
T Consensus 336 l~~~l~~~~~-~~~~~~ivf~~~~~~~~l~~~L~~~~~-------~v~~~~g~~~~~~r~~i~~~f~~------------ 395 (510)
T 2oca_A 336 IAKLAIKLAQ-KDENAFVMFKHVSHGKAIFDLIKNEYD-------KVYYVSGEVDTETRNIMKTLAEN------------ 395 (510)
T ss_dssp HHHHHHHHHT-TTCEEEEEESSHHHHHHHHHHHHTTCS-------SEEEESSSTTHHHHHHHHHHHHH------------
T ss_pred HHHHHHHHHh-cCCCeEEEEecHHHHHHHHHHHHHcCC-------CeEEEECCCCHHHHHHHHHHHhC------------
Confidence 4455555544 456788888888888888887776431 234455432 2467889999987
Q ss_pred CCCCCCcEEEEEecCccccccccCCCcceEEEEEccCC
Q 002378 752 STPLNGAMLLAVVGGKISEGINFSDGMGRCIVMVGLPY 789 (929)
Q Consensus 752 ~~~~~gaiL~aV~rGk~sEGIDf~d~~~r~ViivGlPf 789 (929)
+...||+|.+ ..+++|||+++ ++.||+.+.|.
T Consensus 396 ---g~~~vLv~T~-~~~~~GiDip~--v~~vi~~~~~~ 427 (510)
T 2oca_A 396 ---GKGIIIVASY-GVFSTGISVKN--LHHVVLAHGVK 427 (510)
T ss_dssp ---CCSCEEEEEH-HHHHHSCCCCS--EEEEEESSCCC
T ss_pred ---CCCCEEEEEc-Chhhccccccc--CcEEEEeCCCC
Confidence 3445777663 58999999998 88999888774
No 74
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=96.32 E-value=0.025 Score=75.10 Aligned_cols=46 Identities=33% Similarity=0.455 Sum_probs=38.3
Q ss_pred CC-CC-CCHHHHHHHHHHHHHHHcCCceeeeCCCCCcchHHHHHHHHHhHH
Q 002378 15 FP-YK-PYSIQTDFMKALYCSLENGGVSMLESPTGTGKTLSIICSALQWVV 63 (929)
Q Consensus 15 FP-f~-py~~Q~~~M~~v~~~~~~~~~~~~esptgtgktl~~l~~~l~~~~ 63 (929)
|| |+ +.++|...... +++.++|.|+.+|||+|||++...+.|..|.
T Consensus 74 f~g~~~ln~iQs~~~~~---al~~~~N~lv~APTGsGKTlva~l~il~~l~ 121 (1724)
T 4f92_B 74 FEGFKTLNRIQSKLYRA---ALETDENLLLCAPTGAGKTNVALMCMLREIG 121 (1724)
T ss_dssp CTTCSBCCHHHHHTHHH---HHTCCCCEEEECCTTSCCHHHHHHHHHHHHG
T ss_pred cCCCCCCCHHHHHHHHH---HHcCCCcEEEEeCCcchHHHHHHHHHHHHHH
Confidence 66 65 89999886554 3567899999999999999999999887764
No 75
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=96.30 E-value=0.0026 Score=77.43 Aligned_cols=37 Identities=30% Similarity=0.374 Sum_probs=32.4
Q ss_pred CCCCHHHHHHHHHHHHHHHcCCceeeeCCCCCcchHHHHHHHH
Q 002378 17 YKPYSIQTDFMKALYCSLENGGVSMLESPTGTGKTLSIICSAL 59 (929)
Q Consensus 17 f~py~~Q~~~M~~v~~~~~~~~~~~~esptgtgktl~~l~~~l 59 (929)
|.|||+|..-.- .|..|+ |.+++|||||||++++|++
T Consensus 82 ~~pt~VQ~~~ip----~ll~G~--Iaea~TGeGKTlaf~LP~~ 118 (844)
T 1tf5_A 82 MFPFKVQLMGGV----ALHDGN--IAEMKTGEGKTLTSTLPVY 118 (844)
T ss_dssp CCCCHHHHHHHH----HHHTTS--EEECCTTSCHHHHHHHHHH
T ss_pred CCCcHHHHHhhH----HHhCCC--EEEccCCcHHHHHHHHHHH
Confidence 489999998866 556777 9999999999999999997
No 76
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.30 E-value=0.0026 Score=66.30 Aligned_cols=42 Identities=17% Similarity=0.268 Sum_probs=34.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHcCCceeeeCCCCCcchHHHHHHHHHh
Q 002378 16 PYKPYSIQTDFMKALYCSLENGGVSMLESPTGTGKTLSIICSALQW 61 (929)
Q Consensus 16 Pf~py~~Q~~~M~~v~~~~~~~~~~~~esptgtgktl~~l~~~l~~ 61 (929)
++..|++|.+.+. .+.+|++.++.+|||+|||+.+....+..
T Consensus 59 ~~p~~~~q~~~i~----~i~~g~~~~i~g~TGsGKTt~~~~~~~~~ 100 (235)
T 3llm_A 59 LLPVKKFESEILE----AISQNSVVIIRGATGCGKTTQVPQFILDD 100 (235)
T ss_dssp TSGGGGGHHHHHH----HHHHCSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHH----HHhcCCEEEEEeCCCCCcHHhHHHHHhcc
Confidence 4557888988766 66789999999999999999887766543
No 77
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=96.27 E-value=0.0037 Score=74.37 Aligned_cols=39 Identities=28% Similarity=0.279 Sum_probs=34.5
Q ss_pred CCCHHHHHHHHHHHHHHHcC-CceeeeCCCCCcchHHHHH
Q 002378 18 KPYSIQTDFMKALYCSLENG-GVSMLESPTGTGKTLSIIC 56 (929)
Q Consensus 18 ~py~~Q~~~M~~v~~~~~~~-~~~~~esptgtgktl~~l~ 56 (929)
.|+|.|.+.+..+++.+.+| ..+++.+|||||||++.+.
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~ 217 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQ 217 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHH
Confidence 79999999999999999987 5589999999999999654
No 78
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=96.26 E-value=0.014 Score=71.24 Aligned_cols=44 Identities=23% Similarity=0.274 Sum_probs=36.3
Q ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCceeeeCCCCCcchHHHHHHHHHh
Q 002378 15 FPY-KPYSIQTDFMKALYCSLENGGVSMLESPTGTGKTLSIICSALQW 61 (929)
Q Consensus 15 FPf-~py~~Q~~~M~~v~~~~~~~~~~~~esptgtgktl~~l~~~l~~ 61 (929)
++| .|||+|.+.+..+ +.+++++|+.+|||+|||+++..+.+..
T Consensus 19 ~g~~~l~~~Q~~~i~~~---~~~~~~~lv~apTGsGKT~~~~l~il~~ 63 (720)
T 2zj8_A 19 RGIESFYPPQAEALKSG---ILEGKNALISIPTASGKTLIAEIAMVHR 63 (720)
T ss_dssp TTCCBCCHHHHHHHTTT---GGGTCEEEEECCGGGCHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHH---hcCCCcEEEEcCCccHHHHHHHHHHHHH
Confidence 678 5999999987742 5569999999999999999887776644
No 79
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=96.25 E-value=0.0062 Score=73.83 Aligned_cols=45 Identities=20% Similarity=0.183 Sum_probs=37.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHcCCceeeeCCCCCcchHHHHHHHHHhHHH
Q 002378 16 PYKPYSIQTDFMKALYCSLENGGVSMLESPTGTGKTLSIICSALQWVVD 64 (929)
Q Consensus 16 Pf~py~~Q~~~M~~v~~~~~~~~~~~~esptgtgktl~~l~~~l~~~~~ 64 (929)
+|+|+|.|.+.+..+ .+|+++|+.+|||+|||++++.+++..+..
T Consensus 5 ~~~l~~~Q~~~i~~i----l~g~~~ll~~~TGsGKTl~~~~~i~~~l~~ 49 (699)
T 4gl2_A 5 MLQLRPYQMEVAQPA----LEGKNIIICLPTGCGKTRVAVYIAKDHLDK 49 (699)
T ss_dssp --CCCHHHHHHHHHH----HSSCCEEECCCTTSCHHHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHH----HhCCCEEEEcCCCCcHHHHHHHHHHHHHHh
Confidence 578999999987755 458999999999999999999998877654
No 80
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=96.16 E-value=0.022 Score=66.16 Aligned_cols=41 Identities=22% Similarity=0.156 Sum_probs=34.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHcCCceeeeCCCCCcchHHHHHHHHH
Q 002378 16 PYKPYSIQTDFMKALYCSLENGGVSMLESPTGTGKTLSIICSALQ 60 (929)
Q Consensus 16 Pf~py~~Q~~~M~~v~~~~~~~~~~~~esptgtgktl~~l~~~l~ 60 (929)
||+|+|.|.+.+..++. +.++|+.+|||+|||++++.+++.
T Consensus 111 ~~~l~~~Q~~ai~~~~~----~~~~ll~~~tGsGKT~~~~~~~~~ 151 (510)
T 2oca_A 111 RIEPHWYQKDAVFEGLV----NRRRILNLPTSAGRSLIQALLARY 151 (510)
T ss_dssp EECCCHHHHHHHHHHHH----HSEEEEECCSTTTHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh----cCCcEEEeCCCCCHHHHHHHHHHH
Confidence 77999999999887664 488999999999999998765443
No 81
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=96.04 E-value=0.0021 Score=78.27 Aligned_cols=15 Identities=27% Similarity=0.330 Sum_probs=6.4
Q ss_pred HHHHcCCceeeeCCC
Q 002378 32 CSLENGGVSMLESPT 46 (929)
Q Consensus 32 ~~~~~~~~~~~espt 46 (929)
+.+..+..+|+-+||
T Consensus 63 ~~~~~~~~~l~i~P~ 77 (702)
T 2p6r_A 63 REAIKGGKSLYVVPL 77 (702)
T ss_dssp HHHHTTCCEEEEESS
T ss_pred HHHHhCCcEEEEeCc
Confidence 333334444444444
No 82
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=96.04 E-value=0.0037 Score=76.20 Aligned_cols=20 Identities=20% Similarity=0.087 Sum_probs=9.1
Q ss_pred CCeEEEccCHHHHHHHHHHH
Q 002378 686 EGIIVFFPSFEYVERVYGAW 705 (929)
Q Consensus 686 gg~LVfFpSy~~l~~~~~~w 705 (929)
+.+|||+||-...+.+...+
T Consensus 253 ~~~LVF~~s~~~~~~~a~~L 272 (715)
T 2va8_A 253 GQVLVFRNSRKMAESTALKI 272 (715)
T ss_dssp CCEEEECSSHHHHHHHHHHH
T ss_pred CCEEEEECCHHHHHHHHHHH
Confidence 34444444444444444443
No 83
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=96.02 E-value=0.0032 Score=76.95 Aligned_cols=16 Identities=38% Similarity=0.407 Sum_probs=10.7
Q ss_pred HhCCCCCCCEEEEeCC
Q 002378 377 SLGLNLKNNIVIIDEA 392 (929)
Q Consensus 377 ~l~i~l~~~ivI~DEA 392 (929)
..|+++.+..+|||-.
T Consensus 331 ~~Gvdip~~~~VI~~~ 346 (720)
T 2zj8_A 331 SAGINTPAFRVIIRDI 346 (720)
T ss_dssp GGGCCCCBSEEEECCS
T ss_pred hccCCCCceEEEEcCC
Confidence 4577777777777744
No 84
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=96.02 E-value=0.0084 Score=69.04 Aligned_cols=42 Identities=17% Similarity=0.098 Sum_probs=34.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHcCCceeeeCCCCCcchHHHHHHH
Q 002378 13 PAFPYKPYSIQTDFMKALYCSLENGGVSMLESPTGTGKTLSIICSA 58 (929)
Q Consensus 13 ~~FPf~py~~Q~~~M~~v~~~~~~~~~~~~esptgtgktl~~l~~~ 58 (929)
..||++|+|.|.+.+.. +.+++.+|+.+|||+|||++++.++
T Consensus 88 ~~~~~~l~~~Q~~ai~~----i~~~~~~ll~~~TGsGKT~~~l~~i 129 (472)
T 2fwr_A 88 FDAEISLRDYQEKALER----WLVDKRGCIVLPTGSGKTHVAMAAI 129 (472)
T ss_dssp CCCCCCBCHHHHHHHHH----HTTTTEEEEECCTTSCHHHHHHHHH
T ss_pred ccCCCCcCHHHHHHHHH----HHhcCCEEEEeCCCCCHHHHHHHHH
Confidence 44788999999998774 4556789999999999999876543
No 85
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=95.97 E-value=0.042 Score=66.27 Aligned_cols=77 Identities=8% Similarity=0.104 Sum_probs=60.2
Q ss_pred cCCCeEEEccCHHHHHHHHHHHHhcChhHHhhcCccEEEcCCCCchHHHHHHHHHHHHhccCCCCCCCCCCCCCcEEEEE
Q 002378 684 VPEGIIVFFPSFEYVERVYGAWKSLGILDRIMKKKHVFREPRGNTHVESVLKEYQKTIDTLSSRPKEDSTPLNGAMLLAV 763 (929)
Q Consensus 684 vpgg~LVfFpSy~~l~~~~~~w~~~~~~~~l~~~K~if~E~~~~~~~~~~l~~y~~~i~~~~~~~~~~~~~~~gaiL~aV 763 (929)
.++.+|||+||-...+.+++.++..++ +-..+-+ .+.+.+++.|++ +.-.||+|+
T Consensus 409 ~~~~~lVF~~s~~~~e~la~~L~~~g~-------~v~~lHg---~eR~~v~~~F~~---------------g~~~VLVaT 463 (673)
T 2wv9_A 409 YAGKTVWFVASVKMSNEIAQCLQRAGK-------RVIQLNR---KSYDTEYPKCKN---------------GDWDFVITT 463 (673)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHTTTC-------CEEEECS---SSHHHHGGGGGT---------------CCCSEEEEC
T ss_pred CCCCEEEEECCHHHHHHHHHHHHhCCC-------eEEEeCh---HHHHHHHHHHHC---------------CCceEEEEC
Confidence 477899999999999999998876532 2233333 467888888875 456799998
Q ss_pred ecCccccccccCCCcceEEEEEccCCC
Q 002378 764 VGGKISEGINFSDGMGRCIVMVGLPYP 790 (929)
Q Consensus 764 ~rGk~sEGIDf~d~~~r~ViivGlPfp 790 (929)
.-+.+|||++ ++.||..|+++-
T Consensus 464 --dv~e~GIDip---v~~VI~~g~~~~ 485 (673)
T 2wv9_A 464 --DISEMGANFG---ASRVIDCRKSVK 485 (673)
T ss_dssp --GGGGTTCCCC---CSEEEECCEECC
T ss_pred --chhhcceeeC---CcEEEECCCccc
Confidence 8999999998 678999887764
No 86
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=95.91 E-value=0.035 Score=66.99 Aligned_cols=79 Identities=13% Similarity=0.198 Sum_probs=60.9
Q ss_pred CCCeEEEccCHHHHHHHHHHHHhcChhHHhhcCccEEEcC-CCCchHHHHHHHHHHHHhccCCCCCCCCCCCCCcEEEEE
Q 002378 685 PEGIIVFFPSFEYVERVYGAWKSLGILDRIMKKKHVFREP-RGNTHVESVLKEYQKTIDTLSSRPKEDSTPLNGAMLLAV 763 (929)
Q Consensus 685 pgg~LVfFpSy~~l~~~~~~w~~~~~~~~l~~~K~if~E~-~~~~~~~~~l~~y~~~i~~~~~~~~~~~~~~~gaiL~aV 763 (929)
++.+|||++|-...+.+.+.+...++ +..++.+ .+..+...+++.|+. +.-.||+|+
T Consensus 445 ~~~vlVf~~t~~~ae~L~~~L~~~gi-------~~~~lh~~~~~~~R~~~l~~f~~---------------g~~~VLVaT 502 (661)
T 2d7d_A 445 NERVLVTTLTKKMSEDLTDYLKEIGI-------KVNYLHSEIKTLERIEIIRDLRL---------------GKYDVLVGI 502 (661)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHTTC-------CEEEECTTCCHHHHHHHHHHHHH---------------TSCSEEEES
T ss_pred CCeEEEEECCHHHHHHHHHHHHhcCC-------CeEEEeCCCCHHHHHHHHHHHhc---------------CCeEEEEec
Confidence 45799999999999999999987653 2223333 233578889999987 345788887
Q ss_pred ecCccccccccCCCcceEEEEEccCC
Q 002378 764 VGGKISEGINFSDGMGRCIVMVGLPY 789 (929)
Q Consensus 764 ~rGk~sEGIDf~d~~~r~ViivGlPf 789 (929)
+.+++|||+++ ++.||+.+.+.
T Consensus 503 --~~l~~GlDip~--v~lVi~~d~d~ 524 (661)
T 2d7d_A 503 --NLLREGLDIPE--VSLVAILDADK 524 (661)
T ss_dssp --CCCSTTCCCTT--EEEEEETTTTC
T ss_pred --chhhCCcccCC--CCEEEEeCccc
Confidence 88999999997 78999998753
No 87
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=95.83 E-value=0.002 Score=75.39 Aligned_cols=42 Identities=26% Similarity=0.280 Sum_probs=33.7
Q ss_pred CCHHHHHHHHHHHHHHHcCCceeeeCCCCCcchHHHHHHHHHhH
Q 002378 19 PYSIQTDFMKALYCSLENGGVSMLESPTGTGKTLSIICSALQWV 62 (929)
Q Consensus 19 py~~Q~~~M~~v~~~~~~~~~~~~esptgtgktl~~l~~~l~~~ 62 (929)
|++.|.+.+..+++. .++++|+.+|||||||++++.+++..+
T Consensus 142 p~~~Q~~ai~~i~~~--~~~~~ll~apTGsGKT~~~~~~il~~l 183 (508)
T 3fho_A 142 XXKIQEKALPLLLSN--PPRNMIGQSQSGTGKTAAFALTMLSRV 183 (508)
T ss_dssp CCCTTSSSHHHHHCS--SCCCEEEECCSSTTSHHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHHcC--CCCCEEEECCCCccHHHHHHHHHHHHH
Confidence 888998887654432 249999999999999999998888654
No 88
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=95.72 E-value=0.0071 Score=76.93 Aligned_cols=43 Identities=21% Similarity=0.176 Sum_probs=35.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHcCCceeeeCCCCCcchHHHHHHHHHhHH
Q 002378 15 FPYKPYSIQTDFMKALYCSLENGGVSMLESPTGTGKTLSIICSALQWVV 63 (929)
Q Consensus 15 FPf~py~~Q~~~M~~v~~~~~~~~~~~~esptgtgktl~~l~~~l~~~~ 63 (929)
|.|+| |+|.+.+.. +.+|+++|+.+|||||||+ ++.+++.++.
T Consensus 54 ~g~~p-~iQ~~ai~~----il~g~dvlv~apTGSGKTl-~~lp~l~~~~ 96 (1054)
T 1gku_B 54 VGEPR-AIQKMWAKR----ILRKESFAATAPTGVGKTS-FGLAMSLFLA 96 (1054)
T ss_dssp TCSCC-HHHHHHHHH----HHTTCCEECCCCBTSCSHH-HHHHHHHHHH
T ss_pred cCCCH-HHHHHHHHH----HHhCCCEEEEcCCCCCHHH-HHHHHHHHHh
Confidence 45558 999998774 4578999999999999999 7777777664
No 89
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=95.70 E-value=0.0055 Score=74.66 Aligned_cols=37 Identities=32% Similarity=0.472 Sum_probs=31.9
Q ss_pred CCCCHHHHHHHHHHHHHHHcCCceeeeCCCCCcchHHHHHHHH
Q 002378 17 YKPYSIQTDFMKALYCSLENGGVSMLESPTGTGKTLSIICSAL 59 (929)
Q Consensus 17 f~py~~Q~~~M~~v~~~~~~~~~~~~esptgtgktl~~l~~~l 59 (929)
+.|||+|..-.- .|..|+ |.|++||+||||++++|++
T Consensus 110 ~rP~~VQ~~~ip----~Ll~G~--Iaem~TGeGKTLa~~LP~~ 146 (922)
T 1nkt_A 110 QRPFDVQVMGAA----ALHLGN--VAEMKTGEGKTLTCVLPAY 146 (922)
T ss_dssp CCCCHHHHHHHH----HHHTTE--EEECCTTSCHHHHTHHHHH
T ss_pred CCCCHHHHHHHH----hHhcCC--EEEecCCCccHHHHHHHHH
Confidence 589999998865 455676 9999999999999999986
No 90
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=95.69 E-value=0.0064 Score=73.89 Aligned_cols=38 Identities=26% Similarity=0.238 Sum_probs=32.6
Q ss_pred CCCCHHHHHHHHHHHHHHHcCCceeeeCCCCCcchHHHHHHHHH
Q 002378 17 YKPYSIQTDFMKALYCSLENGGVSMLESPTGTGKTLSIICSALQ 60 (929)
Q Consensus 17 f~py~~Q~~~M~~v~~~~~~~~~~~~esptgtgktl~~l~~~l~ 60 (929)
..|||+|..-.- .|..|+ |.|++|||||||++++|++.
T Consensus 73 ~~p~~VQ~~~i~----~ll~G~--Iaem~TGsGKTlaf~LP~l~ 110 (853)
T 2fsf_A 73 MRHFDVQLLGGM----VLNERC--IAEMRTGEGKTLTATLPAYL 110 (853)
T ss_dssp CCCCHHHHHHHH----HHHSSE--EEECCTTSCHHHHHHHHHHH
T ss_pred CCCChHHHhhcc----cccCCe--eeeecCCchHHHHHHHHHHH
Confidence 579999998865 556777 99999999999999999983
No 91
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=95.63 E-value=0.02 Score=66.76 Aligned_cols=43 Identities=26% Similarity=0.439 Sum_probs=37.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHcCCceeeeCCCCCcchHHHHHHHHHhH
Q 002378 16 PYKPYSIQTDFMKALYCSLENGGVSMLESPTGTGKTLSIICSALQWV 62 (929)
Q Consensus 16 Pf~py~~Q~~~M~~v~~~~~~~~~~~~esptgtgktl~~l~~~l~~~ 62 (929)
||+|+|.|.+.+..+ .+|+++|+.+|||+|||++++.+++..+
T Consensus 2 ~~~~~~~Q~~~i~~~----~~~~~~l~~~~tGsGKT~~~~~~~~~~~ 44 (555)
T 3tbk_A 2 PLKPRNYQLELALPA----KKGKNTIICAPTGCGKTFVSLLICEHHL 44 (555)
T ss_dssp CCCCCHHHHHHHHHH----HTTCCEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHH----hCCCCEEEEeCCCChHHHHHHHHHHHHH
Confidence 789999999997754 4789999999999999999998876554
No 92
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=95.57 E-value=0.051 Score=65.60 Aligned_cols=79 Identities=10% Similarity=0.174 Sum_probs=59.9
Q ss_pred cCCCeEEEccCHHHHHHHHHHHHhcChhHHhhcCccEEEcC-CCCchHHHHHHHHHHHHhccCCCCCCCCCCCCCcEEEE
Q 002378 684 VPEGIIVFFPSFEYVERVYGAWKSLGILDRIMKKKHVFREP-RGNTHVESVLKEYQKTIDTLSSRPKEDSTPLNGAMLLA 762 (929)
Q Consensus 684 vpgg~LVfFpSy~~l~~~~~~w~~~~~~~~l~~~K~if~E~-~~~~~~~~~l~~y~~~i~~~~~~~~~~~~~~~gaiL~a 762 (929)
.++.+|||++|-...+.+.+.+...++ +..+..+ .+..+...+++.|+. +.-.||+|
T Consensus 438 ~~~~vlVf~~t~~~ae~L~~~L~~~gi-------~~~~lh~~~~~~~R~~~~~~f~~---------------g~~~VLva 495 (664)
T 1c4o_A 438 RGERTLVTVLTVRMAEELTSFLVEHGI-------RARYLHHELDAFKRQALIRDLRL---------------GHYDCLVG 495 (664)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTC-------CEEEECTTCCHHHHHHHHHHHHT---------------TSCSEEEE
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhcCC-------CceeecCCCCHHHHHHHHHHhhc---------------CCceEEEc
Confidence 356899999999999999999987653 1222232 233467889998875 34568888
Q ss_pred EecCccccccccCCCcceEEEEEccC
Q 002378 763 VVGGKISEGINFSDGMGRCIVMVGLP 788 (929)
Q Consensus 763 V~rGk~sEGIDf~d~~~r~ViivGlP 788 (929)
+ ..+++|||+++ ++.||+.+.+
T Consensus 496 T--~~l~~GlDip~--v~lVI~~d~d 517 (664)
T 1c4o_A 496 I--NLLREGLDIPE--VSLVAILDAD 517 (664)
T ss_dssp S--CCCCTTCCCTT--EEEEEETTTT
T ss_pred c--ChhhcCccCCC--CCEEEEeCCc
Confidence 7 88999999997 7889998864
No 93
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=95.55 E-value=0.075 Score=68.13 Aligned_cols=78 Identities=12% Similarity=0.264 Sum_probs=56.5
Q ss_pred CCCeEEEccCHHHHHHHHHHHHhcChhHHhhcCccEEEcCC-CCchHHHHHHHHHHHHhccCCCCCCCCCCCCCcEEEEE
Q 002378 685 PEGIIVFFPSFEYVERVYGAWKSLGILDRIMKKKHVFREPR-GNTHVESVLKEYQKTIDTLSSRPKEDSTPLNGAMLLAV 763 (929)
Q Consensus 685 pgg~LVfFpSy~~l~~~~~~w~~~~~~~~l~~~K~if~E~~-~~~~~~~~l~~y~~~i~~~~~~~~~~~~~~~gaiL~aV 763 (929)
++.++||.++-..++.+++.++.. +...+-.++-++ ...+.+.+++.|++ +.-.||+|+
T Consensus 812 g~qvlvf~~~v~~~~~l~~~L~~~-----~p~~~v~~lhg~~~~~eR~~il~~F~~---------------g~~~VLVaT 871 (1151)
T 2eyq_A 812 GGQVYYLYNDVENIQKAAERLAEL-----VPEARIAIGHGQMRERELERVMNDFHH---------------QRFNVLVCT 871 (1151)
T ss_dssp TCEEEEECCCSSCHHHHHHHHHHH-----CTTSCEEECCSSCCHHHHHHHHHHHHT---------------TSCCEEEES
T ss_pred CCeEEEEECCHHHHHHHHHHHHHh-----CCCCeEEEEeCCCCHHHHHHHHHHHHc---------------CCCcEEEEC
Confidence 567999999999899888888753 111122334443 23468899999986 456899999
Q ss_pred ecCccccccccCCCcceEEEEEc
Q 002378 764 VGGKISEGINFSDGMGRCIVMVG 786 (929)
Q Consensus 764 ~rGk~sEGIDf~d~~~r~ViivG 786 (929)
..+.+|||+++ ++.||+.+
T Consensus 872 --~v~e~GiDip~--v~~VIi~~ 890 (1151)
T 2eyq_A 872 --TIIETGIDIPT--ANTIIIER 890 (1151)
T ss_dssp --STTGGGSCCTT--EEEEEETT
T ss_pred --CcceeeecccC--CcEEEEeC
Confidence 89999999997 66777644
No 94
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=95.51 E-value=0.0068 Score=69.90 Aligned_cols=78 Identities=9% Similarity=0.083 Sum_probs=53.6
Q ss_pred cCCCeEEEccCHHHHHHHHHHHHhcChhHHhhcCccEEEcCCCCchHHHHHHHHHHHHhccCCCCCCCCCCCCCcEEEEE
Q 002378 684 VPEGIIVFFPSFEYVERVYGAWKSLGILDRIMKKKHVFREPRGNTHVESVLKEYQKTIDTLSSRPKEDSTPLNGAMLLAV 763 (929)
Q Consensus 684 vpgg~LVfFpSy~~l~~~~~~w~~~~~~~~l~~~K~if~E~~~~~~~~~~l~~y~~~i~~~~~~~~~~~~~~~gaiL~aV 763 (929)
.++.+|||+||....+.+++.++..++ +-..+.+ .+...+++.|+. +...||+|+
T Consensus 189 ~~~~~LVF~~s~~~~~~l~~~L~~~g~-------~v~~lh~---~~R~~~~~~f~~---------------g~~~iLVaT 243 (459)
T 2z83_A 189 YAGKTVWFVASVKMGNEIAMCLQRAGK-------KVIQLNR---KSYDTEYPKCKN---------------GDWDFVITT 243 (459)
T ss_dssp CCSCEEEECSCHHHHHHHHHHHHHTTC-------CEEEEST---TCCCCCGGGSSS---------------CCCSEEEES
T ss_pred cCCCEEEEeCChHHHHHHHHHHHhcCC-------cEEecCH---HHHHHHHhhccC---------------CCceEEEEC
Confidence 378999999999999999998876532 1122222 233445555543 456899998
Q ss_pred ecCccccccccCCCcceEEEEEccCCCC
Q 002378 764 VGGKISEGINFSDGMGRCIVMVGLPYPS 791 (929)
Q Consensus 764 ~rGk~sEGIDf~d~~~r~ViivGlPfp~ 791 (929)
.-+.+|||+++ +.||-.|..+.+
T Consensus 244 --~v~~~GiDip~---~~VI~~G~~~~~ 266 (459)
T 2z83_A 244 --DISEMGANFGA---SRVIDCRKSVKP 266 (459)
T ss_dssp --SCC---CCCSC---SEEEECCEECCE
T ss_pred --ChHHhCeecCC---CEEEECCccccc
Confidence 89999999998 889998866543
No 95
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=95.23 E-value=0.022 Score=68.13 Aligned_cols=77 Identities=9% Similarity=0.092 Sum_probs=61.1
Q ss_pred cCCCeEEEccCHHHHHHHHHHHHhcChhHHhhcCccEEEcCCCCchHHHHHHHHHHHHhccCCCCCCCCCCCCCcEEEEE
Q 002378 684 VPEGIIVFFPSFEYVERVYGAWKSLGILDRIMKKKHVFREPRGNTHVESVLKEYQKTIDTLSSRPKEDSTPLNGAMLLAV 763 (929)
Q Consensus 684 vpgg~LVfFpSy~~l~~~~~~w~~~~~~~~l~~~K~if~E~~~~~~~~~~l~~y~~~i~~~~~~~~~~~~~~~gaiL~aV 763 (929)
.++.+|||++|....+.+++.++..++ +-..+-+ .+...+++.|++ +.-.||+|+
T Consensus 354 ~~~~~LVF~~s~~~a~~l~~~L~~~g~-------~v~~lhg---~~R~~~l~~F~~---------------g~~~VLVaT 408 (618)
T 2whx_A 354 YQGKTVWFVPSIKAGNDIANCLRKSGK-------RVIQLSR---KTFDTEYPKTKL---------------TDWDFVVTT 408 (618)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHHTTC-------CEEEECT---TTHHHHTTHHHH---------------SCCSEEEEC
T ss_pred CCCCEEEEECChhHHHHHHHHHHHcCC-------cEEEECh---HHHHHHHHhhcC---------------CCcEEEEEC
Confidence 378899999999999999999886532 2223332 467889999987 467899999
Q ss_pred ecCccccccccCCCcceEEEEEccCCC
Q 002378 764 VGGKISEGINFSDGMGRCIVMVGLPYP 790 (929)
Q Consensus 764 ~rGk~sEGIDf~d~~~r~ViivGlPfp 790 (929)
.-+.+|||+ + .+.||..|+++-
T Consensus 409 --dv~~rGiDi-~--v~~VId~g~~~~ 430 (618)
T 2whx_A 409 --DISEMGANF-R--AGRVIDPRRCLK 430 (618)
T ss_dssp --GGGGTTCCC-C--CSEEEECCEEEE
T ss_pred --cHHHcCccc-C--ceEEEECcceec
Confidence 899999999 3 799999998663
No 96
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=95.15 E-value=0.05 Score=63.51 Aligned_cols=44 Identities=27% Similarity=0.318 Sum_probs=33.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHHcCCceeeeCCCCCcchHHHHHHHHHhH
Q 002378 15 FPYKPYSIQTDFMKALYCSLENGGVSMLESPTGTGKTLSIICSALQWV 62 (929)
Q Consensus 15 FPf~py~~Q~~~M~~v~~~~~~~~~~~~esptgtgktl~~l~~~l~~~ 62 (929)
.||+|+|.|.+.+..+ .+|+++|+.+|||+|||++++.+++..+
T Consensus 4 ~~~~~~~~Q~~~i~~~----~~~~~~l~~~~tGsGKT~~~~~~~~~~~ 47 (556)
T 4a2p_A 4 ETKKARSYQIELAQPA----INGKNALICAPTGSGKTFVSILICEHHF 47 (556)
T ss_dssp ----CCHHHHHHHHHH----HTTCCEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHH----HcCCCEEEEcCCCChHHHHHHHHHHHHH
Confidence 5789999999987654 5689999999999999999988876543
No 97
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=95.13 E-value=0.054 Score=65.29 Aligned_cols=122 Identities=17% Similarity=0.087 Sum_probs=80.5
Q ss_pred cCCCeEEEccCHHHHHHHHHHHHhcChhHHhhcCccEEEcCC-CCchHHHHHHHHHHHHhccCCCCCCCCCCCCCcEEEE
Q 002378 684 VPEGIIVFFPSFEYVERVYGAWKSLGILDRIMKKKHVFREPR-GNTHVESVLKEYQKTIDTLSSRPKEDSTPLNGAMLLA 762 (929)
Q Consensus 684 vpgg~LVfFpSy~~l~~~~~~w~~~~~~~~l~~~K~if~E~~-~~~~~~~~l~~y~~~i~~~~~~~~~~~~~~~gaiL~a 762 (929)
...|.+|||+|....+.+.+.+...++ +-.++-+. ...++..+++.|+. + .+.-.||+|
T Consensus 319 ~~~g~iIf~~s~~~ie~la~~L~~~g~-------~v~~lHG~L~~~~R~~~~~~F~~----~---------~g~~~VLVA 378 (677)
T 3rc3_A 319 LRPGDCIVCFSKNDIYSVSRQIEIRGL-------ESAVIYGSLPPGTKLAQAKKFND----P---------NDPCKILVA 378 (677)
T ss_dssp CCTTEEEECSSHHHHHHHHHHHHHTTC-------CCEEECTTSCHHHHHHHHHHHHC----T---------TSSCCEEEE
T ss_pred cCCCCEEEEcCHHHHHHHHHHHHhcCC-------CeeeeeccCCHHHHHHHHHHHHc----c---------CCCeEEEEe
Confidence 356778899999999999988876431 22333332 22356788888875 0 124578888
Q ss_pred EecCccccccccCCCcceEEEEEccCCCCCCCHHHHHHHHHHhhccCCCCCccCCccccccccCCcccccccccccCCCc
Q 002378 763 VVGGKISEGINFSDGMGRCIVMVGLPYPSPSNIELLERIKHIEGLGDTNSKTLNTSASDAYYNGDAQAGFGILRSCRGRG 842 (929)
Q Consensus 763 V~rGk~sEGIDf~d~~~r~ViivGlPfp~~~d~~v~~k~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 842 (929)
+ .-+..|||+ + ++.||..|++.. ..||.-. .+
T Consensus 379 T--di~e~GlDi-~--v~~VI~~~~~k~-~~~~~G~--~~---------------------------------------- 410 (677)
T 3rc3_A 379 T--DAIGMGLNL-S--IRRIIFYSLIKP-SINEKGE--RE---------------------------------------- 410 (677)
T ss_dssp C--GGGGSSCCC-C--BSEEEESCSBC-----------------------------------------------------
T ss_pred C--cHHHCCcCc-C--ccEEEECCcccc-ccccCCc--cc----------------------------------------
Confidence 8 899999999 4 899999999875 2232200 00
Q ss_pred hhhHhhHHHHHHHHhhcccccCCCC--eEEEEEEec
Q 002378 843 KEYYENLCMKAVNQSIGRAIRHIND--HAAILLVDL 876 (929)
Q Consensus 843 ~~~y~~~a~ravnQaiGR~IRh~~D--~g~iiLlD~ 876 (929)
..++ ......|.+||+=|...+ .|.++++..
T Consensus 411 ~~p~---s~~~~~QR~GRAGR~g~~g~~G~v~~l~~ 443 (677)
T 3rc3_A 411 LEPI---TTSQALQIAGRAGRFSSRFKEGEVTTMNH 443 (677)
T ss_dssp -CBC---CHHHHHHHHTTBTCTTSSCSSEEEEESST
T ss_pred cccC---CHHHHHHHhcCCCCCCCCCCCEEEEEEec
Confidence 0011 123467999999999976 688888864
No 98
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=95.12 E-value=0.012 Score=71.71 Aligned_cols=37 Identities=27% Similarity=0.296 Sum_probs=32.1
Q ss_pred CCCCHHHHHHHHHHHHHHHcCCceeeeCCCCCcchHHHHHHHH
Q 002378 17 YKPYSIQTDFMKALYCSLENGGVSMLESPTGTGKTLSIICSAL 59 (929)
Q Consensus 17 f~py~~Q~~~M~~v~~~~~~~~~~~~esptgtgktl~~l~~~l 59 (929)
|.|||+|....- .|..|+ |.|++|||||||+++++++
T Consensus 78 ~~Pt~VQ~~~ip----~LlqG~--IaeakTGeGKTLvf~Lp~~ 114 (997)
T 2ipc_A 78 MRHFDVQLIGGA----VLHEGK--IAEMKTGEGKTLVATLAVA 114 (997)
T ss_dssp CCCCHHHHHHHH----HHHTTS--EEECCSTHHHHHHHHHHHH
T ss_pred CCCcHHHHhhcc----cccCCc--eeeccCCCchHHHHHHHHH
Confidence 489999998865 556777 9999999999999999985
No 99
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=95.05 E-value=0.13 Score=54.88 Aligned_cols=95 Identities=11% Similarity=0.109 Sum_probs=64.9
Q ss_pred HHHHHHHHHHhhccCCCeEEEccCHHHHHHHHHHHHhc-ChhHHhhcCccEEEcCCC-CchHHHHHHHHHHHHhccCCCC
Q 002378 671 EELGLLLCNLVSVVPEGIIVFFPSFEYVERVYGAWKSL-GILDRIMKKKHVFREPRG-NTHVESVLKEYQKTIDTLSSRP 748 (929)
Q Consensus 671 ~~l~~~i~~~~~~vpgg~LVfFpSy~~l~~~~~~w~~~-~~~~~l~~~K~if~E~~~-~~~~~~~l~~y~~~i~~~~~~~ 748 (929)
..|...|..+.. .+..+|||..+-..++.+...+... ++ ...++-+.. ..++..++++|+..
T Consensus 99 ~~L~~ll~~~~~-~~~kvlIFs~~~~~~~~l~~~L~~~~g~-------~~~~l~G~~~~~~R~~~i~~F~~~-------- 162 (271)
T 1z5z_A 99 IRTMEIIEEALD-EGDKIAIFTQFVDMGKIIRNIIEKELNT-------EVPFLYGELSKKERDDIISKFQNN-------- 162 (271)
T ss_dssp HHHHHHHHHHHH-TTCCEEEEESCHHHHHHHHHHHHHHHCS-------CCCEECTTSCHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHHHh-CCCeEEEEeccHHHHHHHHHHHHHhcCC-------cEEEEECCCCHHHHHHHHHHhcCC--------
Confidence 445555555432 4568999999999999888887653 31 233444432 24789999999981
Q ss_pred CCCCCCCCCcEEEEEecCccccccccCCCcceEEEEEccCCC
Q 002378 749 KEDSTPLNGAMLLAVVGGKISEGINFSDGMGRCIVMVGLPYP 790 (929)
Q Consensus 749 ~~~~~~~~gaiL~aV~rGk~sEGIDf~d~~~r~ViivGlPfp 790 (929)
.....+|++. ...++|||+++ +..||+..+|+-
T Consensus 163 -----~~~~v~L~st--~~~g~Glnl~~--a~~VI~~d~~wn 195 (271)
T 1z5z_A 163 -----PSVKFIVLSV--KAGGFGINLTS--ANRVIHFDRWWN 195 (271)
T ss_dssp -----TTCCEEEEEC--CTTCCCCCCTT--CSEEEECSCCSC
T ss_pred -----CCCCEEEEeh--hhhcCCcCccc--CCEEEEECCCCC
Confidence 0112366666 78899999986 789999998873
No 100
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=95.04 E-value=0.1 Score=60.43 Aligned_cols=94 Identities=11% Similarity=0.133 Sum_probs=62.6
Q ss_pred HHHHHHHHHHhhccCCCeEEEccCHHHHHHHHHHHHhc-ChhHHhhcCccEEEcCC-CCchHHHHHHHHHHHHhccCCCC
Q 002378 671 EELGLLLCNLVSVVPEGIIVFFPSFEYVERVYGAWKSL-GILDRIMKKKHVFREPR-GNTHVESVLKEYQKTIDTLSSRP 748 (929)
Q Consensus 671 ~~l~~~i~~~~~~vpgg~LVfFpSy~~l~~~~~~w~~~-~~~~~l~~~K~if~E~~-~~~~~~~~l~~y~~~i~~~~~~~ 748 (929)
..+.+.|.++.. .+..+|||..+-..++.+.+.+... + ....++-+. ...+++.++++|++.
T Consensus 328 ~~l~~~l~~~~~-~~~k~lvF~~~~~~~~~l~~~l~~~~~-------~~~~~~~g~~~~~~R~~~~~~F~~~-------- 391 (500)
T 1z63_A 328 IRTMEIIEEALD-EGDKIAIFTQFVDMGKIIRNIIEKELN-------TEVPFLYGELSKKERDDIISKFQNN-------- 391 (500)
T ss_dssp HHHHHHHHHHHT-TTCCEEEECSCHHHHHHHHHHHHHHHT-------CCCCEEETTSCHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHHHc-cCCcEEEEEehHHHHHHHHHHHHHhhC-------CCeEEEECCCCHHHHHHHHHHhcCC--------
Confidence 344454544432 3567999999989888888877653 2 122344443 234789999999881
Q ss_pred CCCCCCCCCcEEEEEecCccccccccCCCcceEEEEEccCC
Q 002378 749 KEDSTPLNGAMLLAVVGGKISEGINFSDGMGRCIVMVGLPY 789 (929)
Q Consensus 749 ~~~~~~~~gaiL~aV~rGk~sEGIDf~d~~~r~ViivGlPf 789 (929)
.....+|+++ ...+||||+++ +..||+..+|+
T Consensus 392 -----~~~~vil~st--~~~~~Glnl~~--~~~vi~~d~~~ 423 (500)
T 1z63_A 392 -----PSVKFIVLSV--KAGGFGINLTS--ANRVIHFDRWW 423 (500)
T ss_dssp -----TTCCCCEEEC--CCC-CCCCCTT--CSEEEESSCCS
T ss_pred -----CCCCEEEEec--ccccCCCchhh--CCEEEEeCCCC
Confidence 0122477777 78999999986 78899988776
No 101
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=94.63 E-value=0.0024 Score=77.22 Aligned_cols=46 Identities=20% Similarity=0.255 Sum_probs=33.9
Q ss_pred CCCHHHH-----HHHHHHH--HHHHcCCceeeeCCCCCcchHHHHHHHHHhHH
Q 002378 18 KPYSIQT-----DFMKALY--CSLENGGVSMLESPTGTGKTLSIICSALQWVV 63 (929)
Q Consensus 18 ~py~~Q~-----~~M~~v~--~~~~~~~~~~~esptgtgktl~~l~~~l~~~~ 63 (929)
.|.++|. ..+..++ +.+..|++.|+.+|||||||++++.++|..+.
T Consensus 215 ~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~ 267 (673)
T 2wv9_A 215 YVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAI 267 (673)
T ss_dssp EEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHH
T ss_pred ccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 4788998 4333322 33448999999999999999999988887654
No 102
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=94.52 E-value=0.045 Score=63.35 Aligned_cols=43 Identities=21% Similarity=0.065 Sum_probs=37.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHcCCceeeeCCCCCcchHHHHH
Q 002378 14 AFPYKPYSIQTDFMKALYCSLENGGVSMLESPTGTGKTLSIIC 56 (929)
Q Consensus 14 ~FPf~py~~Q~~~M~~v~~~~~~~~~~~~esptgtgktl~~l~ 56 (929)
.+...+||.|.+....+......+..+|+..|||+|||+..+.
T Consensus 33 ~~~~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~ 75 (500)
T 1z63_A 33 NIKANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIA 75 (500)
T ss_dssp SCSSCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHH
T ss_pred hhhccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHH
Confidence 3555699999999988888888899999999999999998654
No 103
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=94.50 E-value=0.076 Score=67.52 Aligned_cols=82 Identities=17% Similarity=0.280 Sum_probs=55.4
Q ss_pred HHhhccCCCeEEEccCHHHHHHHHHHHHhcChhHHhhcCccEEEcCCCCchHHHHHHHHHHHHhccCCCCCCCCCCCCCc
Q 002378 679 NLVSVVPEGIIVFFPSFEYVERVYGAWKSLGILDRIMKKKHVFREPRGNTHVESVLKEYQKTIDTLSSRPKEDSTPLNGA 758 (929)
Q Consensus 679 ~~~~~vpgg~LVfFpSy~~l~~~~~~w~~~~~~~~l~~~K~if~E~~~~~~~~~~l~~y~~~i~~~~~~~~~~~~~~~ga 758 (929)
.+++..++++|||+++-...+.+.+.++.. + +-.++.+ +.+.+++.|+. +...
T Consensus 269 ~ll~~~~~~~LVF~~t~~~a~~l~~~L~~~-----~---~v~~lhg----~~~~~l~~F~~---------------G~~~ 321 (1054)
T 1gku_B 269 SILEKLGTGGIIYARTGEEAEEIYESLKNK-----F---RIGIVTA----TKKGDYEKFVE---------------GEID 321 (1054)
T ss_dssp HHHTTSCSCEEEEESSHHHHHHHHHTTTTS-----S---CEEECTT----SSSHHHHHHHH---------------TSCS
T ss_pred HHHhhcCCCEEEEEcCHHHHHHHHHHHhhc-----c---CeeEEec----cHHHHHHHHHc---------------CCCc
Confidence 344445789999999999999888876543 1 1122222 23678999987 4678
Q ss_pred EEEEEe--cCccccccccCCCcceEEEEEccC
Q 002378 759 MLLAVV--GGKISEGINFSDGMGRCIVMVGLP 788 (929)
Q Consensus 759 iL~aV~--rGk~sEGIDf~d~~~r~ViivGlP 788 (929)
||+|+. -.-+++|||+++- .+.||..|+|
T Consensus 322 VLVaTas~Tdv~~rGIDip~V-I~~VI~~~~P 352 (1054)
T 1gku_B 322 HLIGTAHYYGTLVRGLDLPER-IRFAVFVGCP 352 (1054)
T ss_dssp EEEEECC------CCSCCTTT-CCEEEEESCC
T ss_pred EEEEecCCCCeeEeccccCCc-ccEEEEeCCC
Confidence 999831 2779999999981 2679999999
No 104
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=94.36 E-value=0.0057 Score=73.21 Aligned_cols=41 Identities=15% Similarity=0.071 Sum_probs=35.0
Q ss_pred CCHHHHHHHHHHHHHHHcCCceeeeCCCCCcchHHHHHHHHHhHH
Q 002378 19 PYSIQTDFMKALYCSLENGGVSMLESPTGTGKTLSIICSALQWVV 63 (929)
Q Consensus 19 py~~Q~~~M~~v~~~~~~~~~~~~esptgtgktl~~l~~~l~~~~ 63 (929)
|.|+|.. .+..+.+|+++|+.+|||||||++++.++|..+.
T Consensus 172 ~lpiq~~----~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~ 212 (618)
T 2whx_A 172 GEPDYEV----DEDIFRKKRLTIMDLHPGAGKTKRILPSIVREAL 212 (618)
T ss_dssp CCCCCCC----CGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHH
T ss_pred CCCcccc----CHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 5677755 2778899999999999999999999999887764
No 105
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=94.32 E-value=0.11 Score=63.95 Aligned_cols=42 Identities=29% Similarity=0.364 Sum_probs=29.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHcCCceeeeCCCCCcchHHHHHHHHHh
Q 002378 16 PYKPYSIQTDFMKALYCSLENGGVSMLESPTGTGKTLSIICSALQW 61 (929)
Q Consensus 16 Pf~py~~Q~~~M~~v~~~~~~~~~~~~esptgtgktl~~l~~~l~~ 61 (929)
++.|+|.|.+.+. .+.+|+++|+.+|||+|||++++.+++..
T Consensus 246 ~~~l~~~Q~~~i~----~~l~~~~~ll~~~TGsGKTl~~~~~i~~~ 287 (797)
T 4a2q_A 246 TKKARSYQIELAQ----PAINGKNALICAPTGSGKTFVSILICEHH 287 (797)
T ss_dssp --CCCHHHHHHHH----HHHTTCCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHH----HHHhCCCEEEEeCCCChHHHHHHHHHHHH
Confidence 3458888887655 44567788888888888888877766544
No 106
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=94.31 E-value=0.035 Score=73.77 Aligned_cols=43 Identities=26% Similarity=0.458 Sum_probs=36.2
Q ss_pred CCHHHHHHHHHHHHHHHcCCceeeeCCCCCcchHHHHHHHHHhHHH
Q 002378 19 PYSIQTDFMKALYCSLENGGVSMLESPTGTGKTLSIICSALQWVVD 64 (929)
Q Consensus 19 py~~Q~~~M~~v~~~~~~~~~~~~esptgtgktl~~l~~~l~~~~~ 64 (929)
++|+|.+....+| ..++++++.+|||+|||+++..+.+.-+.+
T Consensus 927 fnpiQ~q~~~~l~---~~~~nvlv~APTGSGKTliaelail~~l~~ 969 (1724)
T 4f92_B 927 FNPIQTQVFNTVY---NSDDNVFVGAPTGSGKTICAEFAILRMLLQ 969 (1724)
T ss_dssp CCHHHHHHHHHHH---SCCSCEEEECCTTSCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHh---cCCCcEEEEeCCCCCchHHHHHHHHHHHHh
Confidence 8999999866554 467899999999999999999988876654
No 107
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=94.31 E-value=0.064 Score=64.84 Aligned_cols=44 Identities=23% Similarity=0.366 Sum_probs=36.2
Q ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCceeeeCCCCCcchHHHHHHHHHhH
Q 002378 15 FPY-KPYSIQTDFMKALYCSLENGGVSMLESPTGTGKTLSIICSALQWV 62 (929)
Q Consensus 15 FPf-~py~~Q~~~M~~v~~~~~~~~~~~~esptgtgktl~~l~~~l~~~ 62 (929)
|.| .|+|.|.+.+.. +.+|+++|+.+|||+|||++++.+++..+
T Consensus 9 ~g~~~lr~~Q~~~i~~----~l~g~~~iv~~~TGsGKTl~~~~~i~~~l 53 (696)
T 2ykg_A 9 YSPFKPRNYQLELALP----AMKGKNTIICAPTGCGKTFVSLLICEHHL 53 (696)
T ss_dssp TC--CCCHHHHHHHHH----HHTTCCEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cCCCCccHHHHHHHHH----HHcCCCEEEEcCCCchHHHHHHHHHHHHH
Confidence 555 499999999875 44689999999999999999988877654
No 108
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=94.20 E-value=0.1 Score=65.63 Aligned_cols=41 Identities=29% Similarity=0.378 Sum_probs=27.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHcCCceeeeCCCCCcchHHHHHHHHH
Q 002378 16 PYKPYSIQTDFMKALYCSLENGGVSMLESPTGTGKTLSIICSALQ 60 (929)
Q Consensus 16 Pf~py~~Q~~~M~~v~~~~~~~~~~~~esptgtgktl~~l~~~l~ 60 (929)
++.|+|.|.+.+..+ .+|+++|+.+|||+|||++++.+++.
T Consensus 246 ~~~~r~~Q~~ai~~i----l~g~~~ll~a~TGsGKTl~~~~~i~~ 286 (936)
T 4a2w_A 246 TKKARSYQIELAQPA----INGKNALICAPTGSGKTFVSILICEH 286 (936)
T ss_dssp --CCCHHHHHHHHHH----HTTCCEEEECCTTSCHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHH----HcCCCEEEEeCCCchHHHHHHHHHHH
Confidence 445778887765543 45777888888888888777666543
No 109
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=94.16 E-value=0.28 Score=62.58 Aligned_cols=77 Identities=17% Similarity=0.365 Sum_probs=58.8
Q ss_pred cCCCeEEEccCHHHHHHHHHHHHhcChhHHhhcCccEEEcCCCCchHHHHHHHHHHHHhccCCCCCCCCCCCCCcEEEE-
Q 002378 684 VPEGIIVFFPSFEYVERVYGAWKSLGILDRIMKKKHVFREPRGNTHVESVLKEYQKTIDTLSSRPKEDSTPLNGAMLLA- 762 (929)
Q Consensus 684 vpgg~LVfFpSy~~l~~~~~~w~~~~~~~~l~~~K~if~E~~~~~~~~~~l~~y~~~i~~~~~~~~~~~~~~~gaiL~a- 762 (929)
.++.+|||++|-...+.+...++..++ .+.. .-. ++..+ ++.|++ +.-.||+|
T Consensus 308 ~~~~~LVF~~s~~~a~~l~~~L~~~g~--------~~~~-~lh-g~rr~-l~~F~~---------------G~~~VLVat 361 (1104)
T 4ddu_A 308 FRDGILIFAQTEEEGKELYEYLKRFKF--------NVGE-TWS-EFEKN-FEDFKV---------------GKINILIGV 361 (1104)
T ss_dssp HCSSEEEEESSSHHHHHHHHHHHHTTC--------CEEE-SSS-SHHHH-HHHHHH---------------TSCSEEEEE
T ss_pred cCCCEEEEECcHHHHHHHHHHHHhCCC--------Ceee-Eec-CcHHH-HHHHHC---------------CCCCEEEEe
Confidence 568999999999999999998876542 1210 111 23455 999988 46789999
Q ss_pred ---EecCccccccccCCCcceEEEEEccCC
Q 002378 763 ---VVGGKISEGINFSDGMGRCIVMVGLPY 789 (929)
Q Consensus 763 ---V~rGk~sEGIDf~d~~~r~ViivGlPf 789 (929)
+ .-+++|||+++ .++.||-.++|-
T Consensus 362 as~T--dvlarGIDip~-~V~~VI~~d~P~ 388 (1104)
T 4ddu_A 362 QAYY--GKLTRGVDLPE-RIKYVIFWGTPS 388 (1104)
T ss_dssp TTTH--HHHCCSCCCTT-TCCEEEEESCCE
T ss_pred cCCC--CeeEecCcCCC-CCCEEEEECCCC
Confidence 6 78999999997 357899999996
No 110
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=94.05 E-value=0.064 Score=61.38 Aligned_cols=75 Identities=13% Similarity=0.156 Sum_probs=50.5
Q ss_pred CCCeEEEccCHHHHHHHHHHHHhcChhHHhhcCccEEEcCCCCchHHHHHHHHHHHHhccCCCCCCCCCCCCCcEEEEEe
Q 002378 685 PEGIIVFFPSFEYVERVYGAWKSLGILDRIMKKKHVFREPRGNTHVESVLKEYQKTIDTLSSRPKEDSTPLNGAMLLAVV 764 (929)
Q Consensus 685 pgg~LVfFpSy~~l~~~~~~w~~~~~~~~l~~~K~if~E~~~~~~~~~~l~~y~~~i~~~~~~~~~~~~~~~gaiL~aV~ 764 (929)
++.+|||+||-...+.+++.++..++ +-..+-+ .+.+.+++.|++ +.-.||+|+
T Consensus 177 ~~~~lVF~~s~~~a~~l~~~L~~~~~-------~v~~lhg---~~R~~~~~~F~~---------------g~~~vLVaT- 230 (440)
T 1yks_A 177 KRPTAWFLPSIRAANVMAASLRKAGK-------SVVVLNR---KTFEREYPTIKQ---------------KKPDFILAT- 230 (440)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTTC-------CEEECCS---SSCC-----------------------CCCSEEEES-
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHcCC-------CEEEecc---hhHHHHHhhhcC---------------CCceEEEEC-
Confidence 67899999999999999998876531 2223332 345678888876 456899988
Q ss_pred cCccccccccCCCcceEEEEEccCC
Q 002378 765 GGKISEGINFSDGMGRCIVMVGLPY 789 (929)
Q Consensus 765 rGk~sEGIDf~d~~~r~ViivGlPf 789 (929)
.-+..|||++ ++.||..|.-+
T Consensus 231 -~v~e~GiDip---v~~VI~~g~~~ 251 (440)
T 1yks_A 231 -DIAEMGANLC---VERVLDCRTAF 251 (440)
T ss_dssp -SSTTCCTTCC---CSEEEECCEEE
T ss_pred -ChhheeeccC---ceEEEeCCccc
Confidence 8999999998 67888777644
No 111
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=94.01 E-value=0.014 Score=66.97 Aligned_cols=31 Identities=26% Similarity=0.329 Sum_probs=26.9
Q ss_pred HHHcCCceeeeCCCCCcchHHHHHHHHHhHH
Q 002378 33 SLENGGVSMLESPTGTGKTLSIICSALQWVV 63 (929)
Q Consensus 33 ~~~~~~~~~~esptgtgktl~~l~~~l~~~~ 63 (929)
.+.+|++.|+.+|||||||++++.+.+..+.
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~ 34 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECA 34 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHH
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 4678999999999999999999888887654
No 112
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=93.83 E-value=0.018 Score=66.34 Aligned_cols=33 Identities=21% Similarity=0.293 Sum_probs=28.8
Q ss_pred HHHHHcCCceeeeCCCCCcchHHHHHHHHHhHH
Q 002378 31 YCSLENGGVSMLESPTGTGKTLSIICSALQWVV 63 (929)
Q Consensus 31 ~~~~~~~~~~~~esptgtgktl~~l~~~l~~~~ 63 (929)
-..|.+++++|+.+|||||||++++.++|..+.
T Consensus 15 ~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~ 47 (459)
T 2z83_A 15 PNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAI 47 (459)
T ss_dssp CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHH
T ss_pred HHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 456788999999999999999999999987654
No 113
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=93.81 E-value=0.077 Score=64.99 Aligned_cols=81 Identities=15% Similarity=0.185 Sum_probs=50.2
Q ss_pred CCCeEEEccCHH--------HHHHHHHHHHhcChhHHhhcCccEEEcCC-CCchHHHHHHHHHHHHhccCCCCCCCCCCC
Q 002378 685 PEGIIVFFPSFE--------YVERVYGAWKSLGILDRIMKKKHVFREPR-GNTHVESVLKEYQKTIDTLSSRPKEDSTPL 755 (929)
Q Consensus 685 pgg~LVfFpSy~--------~l~~~~~~w~~~~~~~~l~~~K~if~E~~-~~~~~~~~l~~y~~~i~~~~~~~~~~~~~~ 755 (929)
.+.++||+|+-. ..+.+++.+.... +...+-.++-++ ...+.+.+++.|++ +
T Consensus 578 g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~----~~~~~v~~lHG~m~~~eR~~v~~~F~~---------------G 638 (780)
T 1gm5_A 578 GGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEV----FPEFKLGLMHGRLSQEEKDRVMLEFAE---------------G 638 (780)
T ss_dssp SCCBCCBCCCC--------CHHHHHHHSGGGSC----C---CBCCCCSSSCCSCSHHHHHHHTT---------------T
T ss_pred CCcEEEEecchhhhhhhhHHHHHHHHHHHHhhh----cCCCcEEEEeCCCCHHHHHHHHHHHHC---------------C
Confidence 456899998643 3344444443300 000111222222 23567899999976 4
Q ss_pred CCcEEEEEecCccccccccCCCcceEEEEEccC
Q 002378 756 NGAMLLAVVGGKISEGINFSDGMGRCIVMVGLP 788 (929)
Q Consensus 756 ~gaiL~aV~rGk~sEGIDf~d~~~r~ViivGlP 788 (929)
.-.||+|+ ..+.+|||+++ ++.||+.+.|
T Consensus 639 ~~~ILVaT--~vie~GIDiP~--v~~VIi~d~~ 667 (780)
T 1gm5_A 639 RYDILVST--TVIEVGIDVPR--ANVMVIENPE 667 (780)
T ss_dssp SSSBCCCS--SCCCSCSCCTT--CCEEEBCSCS
T ss_pred CCeEEEEC--CCCCccccCCC--CCEEEEeCCC
Confidence 56789888 89999999998 6778877654
No 114
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=93.59 E-value=0.38 Score=57.68 Aligned_cols=81 Identities=9% Similarity=0.110 Sum_probs=58.1
Q ss_pred cCCCeEEEccCHHHHHHHHHHHHhcChhHHhhcCccEEEcCCC-CchHHHHHHHHHHHHhccCCCCCCCCCCCCC--cEE
Q 002378 684 VPEGIIVFFPSFEYVERVYGAWKSLGILDRIMKKKHVFREPRG-NTHVESVLKEYQKTIDTLSSRPKEDSTPLNG--AML 760 (929)
Q Consensus 684 vpgg~LVfFpSy~~l~~~~~~w~~~~~~~~l~~~K~if~E~~~-~~~~~~~l~~y~~~i~~~~~~~~~~~~~~~g--aiL 760 (929)
....+|||..+-..++.+...+...++ ..+.+.+.. ..+++.++++|.. ...+ .+|
T Consensus 415 ~~~k~lIFs~~~~~~~~l~~~l~~~g~-------~~~~l~G~~~~~~R~~~i~~F~~--------------~~~~~~v~L 473 (644)
T 1z3i_X 415 TSDKVVLVSNYTQTLDLFEKLCRNRRY-------LYVRLDGTMSIKKRAKIVERFNN--------------PSSPEFIFM 473 (644)
T ss_dssp CCCEEEEEESCHHHHHHHHHHHHHHTC-------CEEEECSSCCHHHHHHHHHHHHS--------------TTCCCCEEE
T ss_pred CCCEEEEEEccHHHHHHHHHHHHHCCC-------CEEEEeCCCCHHHHHHHHHHhcC--------------CCCCcEEEE
Confidence 356788888888888888887765442 335565542 2478899999986 1122 356
Q ss_pred EEEecCccccccccCCCcceEEEEEccCC
Q 002378 761 LAVVGGKISEGINFSDGMGRCIVMVGLPY 789 (929)
Q Consensus 761 ~aV~rGk~sEGIDf~d~~~r~ViivGlPf 789 (929)
+++ ...++|||+++ +..||+..+|+
T Consensus 474 ~st--~a~g~Glnl~~--a~~Vi~~d~~w 498 (644)
T 1z3i_X 474 LSS--KAGGCGLNLIG--ANRLVMFDPDW 498 (644)
T ss_dssp EEG--GGSCTTCCCTT--EEEEEECSCCS
T ss_pred Eec--ccccCCccccc--CCEEEEECCCC
Confidence 666 78999999986 88899988776
No 115
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=93.58 E-value=0.15 Score=62.77 Aligned_cols=83 Identities=11% Similarity=0.131 Sum_probs=59.5
Q ss_pred cCCCeEEEccCHHHHHHHHHHHHhcChhHHhhcCccEEEcCCC-CchHHHHHHHHHHHHhccCCCCCCCCCCCCCcEEEE
Q 002378 684 VPEGIIVFFPSFEYVERVYGAWKSLGILDRIMKKKHVFREPRG-NTHVESVLKEYQKTIDTLSSRPKEDSTPLNGAMLLA 762 (929)
Q Consensus 684 vpgg~LVfFpSy~~l~~~~~~w~~~~~~~~l~~~K~if~E~~~-~~~~~~~l~~y~~~i~~~~~~~~~~~~~~~gaiL~a 762 (929)
....+|||...-..++.+...+...++ ....+.+.. ..++..+++.|... ....-.+|++
T Consensus 571 ~g~kvLIFsq~~~~ld~L~~~L~~~g~-------~~~~i~G~~~~~eR~~~i~~F~~~------------~~~~~v~LlS 631 (800)
T 3mwy_W 571 DGHRVLIFSQMVRMLDILGDYLSIKGI-------NFQRLDGTVPSAQRRISIDHFNSP------------DSNDFVFLLS 631 (800)
T ss_dssp TTCCEEEEESCHHHHHHHHHHHHHHTC-------CCEEESTTSCHHHHHHHHHTTSST------------TCSCCCEEEE
T ss_pred CCCeEEEEechHHHHHHHHHHHHhCCC-------CEEEEeCCCCHHHHHHHHHHhhCC------------CCCceEEEEe
Confidence 356799999999999988888875542 345566543 34788899988650 1111247777
Q ss_pred EecCccccccccCCCcceEEEEEccCC
Q 002378 763 VVGGKISEGINFSDGMGRCIVMVGLPY 789 (929)
Q Consensus 763 V~rGk~sEGIDf~d~~~r~ViivGlPf 789 (929)
+ ...++|||++. +..||+...|+
T Consensus 632 t--~agg~GlNL~~--a~~VI~~D~~w 654 (800)
T 3mwy_W 632 T--RAGGLGINLMT--ADTVVIFDSDW 654 (800)
T ss_dssp H--HHHTTTCCCTT--CCEEEESSCCS
T ss_pred c--ccccCCCCccc--cceEEEecCCC
Confidence 6 78899999987 88999988776
No 116
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=93.23 E-value=0.14 Score=64.38 Aligned_cols=83 Identities=17% Similarity=0.197 Sum_probs=61.1
Q ss_pred ccCCCeEEEccCHHHHHHHHHHHHh-cChhHHhhcCccEEEcCC-CCchHHHHHHHHHHHHhccCCCCCCCCCCCCCcEE
Q 002378 683 VVPEGIIVFFPSFEYVERVYGAWKS-LGILDRIMKKKHVFREPR-GNTHVESVLKEYQKTIDTLSSRPKEDSTPLNGAML 760 (929)
Q Consensus 683 ~vpgg~LVfFpSy~~l~~~~~~w~~-~~~~~~l~~~K~if~E~~-~~~~~~~~l~~y~~~i~~~~~~~~~~~~~~~gaiL 760 (929)
..++.++||.++-...+.+...+.. .|+ +...+-+. ...+.+.+++.|+.- ...-.||
T Consensus 501 ~~~~k~iVF~~~~~~~~~l~~~L~~~~g~-------~~~~lhG~~~~~~R~~~l~~F~~g-------------~~~~~vL 560 (968)
T 3dmq_A 501 HRSQKVLVICAKAATALQLEQVLREREGI-------RAAVFHEGMSIIERDRAAAWFAEE-------------DTGAQVL 560 (968)
T ss_dssp TSSSCCCEECSSTHHHHHHHHHHHTTTCC-------CEEEECTTSCTTHHHHHHHHHHST-------------TSSCEEE
T ss_pred CCCCCEEEEeCcHHHHHHHHHHHHHHcCC-------cEEEEeCCCCHHHHHHHHHHHhCC-------------CCcccEE
Confidence 3467899999999999999988874 232 23444443 345789999999870 1125677
Q ss_pred EEEecCccccccccCCCcceEEEEEccCC
Q 002378 761 LAVVGGKISEGINFSDGMGRCIVMVGLPY 789 (929)
Q Consensus 761 ~aV~rGk~sEGIDf~d~~~r~ViivGlPf 789 (929)
+|+ ..+++|||+++ +..||+..+|+
T Consensus 561 vaT--~v~~~GlDl~~--~~~VI~~d~p~ 585 (968)
T 3dmq_A 561 LCS--EIGSEGRNFQF--ASHMVMFDLPF 585 (968)
T ss_dssp ECS--CCTTCSSCCTT--CCEEECSSCCS
T ss_pred Eec--chhhcCCCccc--CcEEEEecCCC
Confidence 776 89999999998 77899888774
No 117
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=93.12 E-value=0.051 Score=68.56 Aligned_cols=45 Identities=18% Similarity=0.181 Sum_probs=36.7
Q ss_pred CCCCHHHHHHHHHHHHHHHcC----------CceeeeCCCCCcchHHHHHHHHHhH
Q 002378 17 YKPYSIQTDFMKALYCSLENG----------GVSMLESPTGTGKTLSIICSALQWV 62 (929)
Q Consensus 17 f~py~~Q~~~M~~v~~~~~~~----------~~~~~esptgtgktl~~l~~~l~~~ 62 (929)
..|+|.|......+++.+..+ +.+|+.+|||||||++. +.++.++
T Consensus 270 ~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll 324 (1038)
T 2w00_A 270 LVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLA 324 (1038)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHH
Confidence 349999999999999988653 68999999999999997 4444433
No 118
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=92.92 E-value=0.12 Score=59.36 Aligned_cols=49 Identities=12% Similarity=0.245 Sum_probs=41.7
Q ss_pred CCCC-CCHHHHHHHHHHHHHHHcCC-ceeeeCCCCCcchHHHHHHHHHhHHH
Q 002378 15 FPYK-PYSIQTDFMKALYCSLENGG-VSMLESPTGTGKTLSIICSALQWVVD 64 (929)
Q Consensus 15 FPf~-py~~Q~~~M~~v~~~~~~~~-~~~~esptgtgktl~~l~~~l~~~~~ 64 (929)
.||+ .-+.|...+..+...|.++. +.++.+|.||||| .++...++||..
T Consensus 21 ~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT-~ll~~~~~~l~~ 71 (459)
T 3upu_A 21 MTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGAT-TLTKFIIEALIS 71 (459)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHH-HHHHHHHHHHHH
T ss_pred CccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHH-HHHHHHHHHHHh
Confidence 6675 77899999999999999887 9999999999999 456677777765
No 119
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=92.00 E-value=0.065 Score=61.14 Aligned_cols=27 Identities=19% Similarity=0.316 Sum_probs=22.9
Q ss_pred cCCceeeeCCCCCcchHHHHHHHHHhH
Q 002378 36 NGGVSMLESPTGTGKTLSIICSALQWV 62 (929)
Q Consensus 36 ~~~~~~~esptgtgktl~~l~~~l~~~ 62 (929)
.|++.|+.+|||+|||++++.++|..+
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~ 27 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREA 27 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 378999999999999999988888544
No 120
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=91.93 E-value=0.054 Score=62.17 Aligned_cols=40 Identities=15% Similarity=0.092 Sum_probs=28.5
Q ss_pred CCHHHHHHHHHHHHHHHcC-CceeeeCCCCCcchHHHHHHHHHhHH
Q 002378 19 PYSIQTDFMKALYCSLENG-GVSMLESPTGTGKTLSIICSALQWVV 63 (929)
Q Consensus 19 py~~Q~~~M~~v~~~~~~~-~~~~~esptgtgktl~~l~~~l~~~~ 63 (929)
|.|+|.. +..+.++ .+.|+.+|||+|||++++.++|..+.
T Consensus 5 ~~~iq~~-----i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~ 45 (451)
T 2jlq_A 5 GEPDYEV-----DEDIFRKKRLTIMDLHPGAGKTKRILPSIVREAL 45 (451)
T ss_dssp CSCCCCC-----CGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHH
T ss_pred CCCcHHH-----HHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHH
Confidence 5566642 2344444 55699999999999999999887543
No 121
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=88.89 E-value=0.25 Score=46.95 Aligned_cols=28 Identities=21% Similarity=0.279 Sum_probs=20.9
Q ss_pred HHHHHHHHH----HcCCceeeeCCCCCcchHH
Q 002378 26 FMKALYCSL----ENGGVSMLESPTGTGKTLS 53 (929)
Q Consensus 26 ~M~~v~~~~----~~~~~~~~esptgtgktl~ 53 (929)
.|+.+.+.+ ..+.++++.+|+|||||+.
T Consensus 9 ~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~l 40 (145)
T 3n70_A 9 WINQYRRRLQQLSETDIAVWLYGAPGTGRMTG 40 (145)
T ss_dssp HHHHHHHHHHHHTTCCSCEEEESSTTSSHHHH
T ss_pred HHHHHHHHHHHHhCCCCCEEEECCCCCCHHHH
Confidence 355555544 5678999999999999953
No 122
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=88.62 E-value=0.45 Score=59.84 Aligned_cols=48 Identities=15% Similarity=0.036 Sum_probs=37.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHcCCceeeeCCCCCcchHHHHHHHHHhH
Q 002378 13 PAFPYKPYSIQTDFMKALYCSLENGGVSMLESPTGTGKTLSIICSALQWV 62 (929)
Q Consensus 13 ~~FPf~py~~Q~~~M~~v~~~~~~~~~~~~esptgtgktl~~l~~~l~~~ 62 (929)
...+++|+|-|......++. ..+..+||..|||+|||+..+..+...+
T Consensus 148 ~~~~~~LrpyQ~eav~~~l~--~~~~~~LLad~tGlGKTi~Ai~~i~~l~ 195 (968)
T 3dmq_A 148 RGQRTSLIPHQLNIAHDVGR--RHAPRVLLADEVGLGKTIEAGMILHQQL 195 (968)
T ss_dssp SCCSSCCCHHHHHHHHHHHH--SSSCEEEECCCTTSCHHHHHHHHHHHHH
T ss_pred cCCCCCCcHHHHHHHHHHHH--hcCCCEEEECCCCCcHHHHHHHHHHHHH
Confidence 44678899999998887665 2367899999999999998766654443
No 123
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=87.88 E-value=0.049 Score=65.22 Aligned_cols=72 Identities=13% Similarity=0.094 Sum_probs=49.9
Q ss_pred cCCCeEEEccCHHHHHHHHHHHHhcChhHHhhcCccEEEcCCCCchHHHHHHHHHHHHhccCCCCCCCCCCCCCcEEEEE
Q 002378 684 VPEGIIVFFPSFEYVERVYGAWKSLGILDRIMKKKHVFREPRGNTHVESVLKEYQKTIDTLSSRPKEDSTPLNGAMLLAV 763 (929)
Q Consensus 684 vpgg~LVfFpSy~~l~~~~~~w~~~~~~~~l~~~K~if~E~~~~~~~~~~l~~y~~~i~~~~~~~~~~~~~~~gaiL~aV 763 (929)
.++.+|||+++....+.+++.++..++ +-..+-+.-..+ +|.+ ....||+|.
T Consensus 395 ~~~~vLVFv~Tr~~ae~la~~L~~~g~-------~v~~lHG~l~q~------er~~---------------~~~~VLVAT 446 (666)
T 3o8b_A 395 RGGRHLIFCHSKKKCDELAAKLSGLGI-------NAVAYYRGLDVS------VIPT---------------IGDVVVVAT 446 (666)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHTTTC-------CEEEECTTSCGG------GSCS---------------SSCEEEEEC
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHhCCC-------cEEEecCCCCHH------HHHh---------------CCCcEEEEC
Confidence 467899999999999999999887542 223333321111 1111 234899998
Q ss_pred ecCccccccccCCCcceEEEEEccC
Q 002378 764 VGGKISEGINFSDGMGRCIVMVGLP 788 (929)
Q Consensus 764 ~rGk~sEGIDf~d~~~r~ViivGlP 788 (929)
.-+..|||+ + .+.||.+|+.
T Consensus 447 --dVaerGIDI-d--V~~VI~~Gl~ 466 (666)
T 3o8b_A 447 --DALMTGYTG-D--FDSVIDCNTC 466 (666)
T ss_dssp --TTHHHHCCC-C--BSEEEECCEE
T ss_pred --ChHHccCCC-C--CcEEEecCcc
Confidence 899999998 3 8999987754
No 124
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=87.36 E-value=1.3 Score=52.88 Aligned_cols=22 Identities=23% Similarity=0.196 Sum_probs=15.8
Q ss_pred HHHHhhcccccCCCCeEEEEEEec
Q 002378 853 AVNQSIGRAIRHINDHAAILLVDL 876 (929)
Q Consensus 853 avnQaiGR~IRh~~D~g~iiLlD~ 876 (929)
...|.+||+=| .-.|.+.|+.+
T Consensus 492 syiQRiGRtGR--g~~G~i~lvt~ 513 (666)
T 3o8b_A 492 SRSQRRGRTGR--GRRGIYRFVTP 513 (666)
T ss_dssp HHHHHHTTBCS--SSCEEEEESCC
T ss_pred HHHHHhccCCC--CCCCEEEEEec
Confidence 45799999999 34466666554
No 125
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=87.25 E-value=0.43 Score=46.39 Aligned_cols=38 Identities=18% Similarity=0.227 Sum_probs=29.2
Q ss_pred CCCCHHHHHHHHHHHHHHHcC--CceeeeCCCCCcchHHH
Q 002378 17 YKPYSIQTDFMKALYCSLENG--GVSMLESPTGTGKTLSI 54 (929)
Q Consensus 17 f~py~~Q~~~M~~v~~~~~~~--~~~~~esptgtgktl~~ 54 (929)
|+.+-.+...++.+.+.+..+ .+++|.||+|||||...
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~ 60 (195)
T 1jbk_A 21 LDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIV 60 (195)
T ss_dssp SCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHH
T ss_pred ccccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHH
Confidence 344456677788888888765 67999999999999643
No 126
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=87.24 E-value=0.2 Score=54.48 Aligned_cols=34 Identities=29% Similarity=0.330 Sum_probs=29.9
Q ss_pred CCHHHHHHHHHHHHHHHcCCceeeeCCCCCcchH
Q 002378 19 PYSIQTDFMKALYCSLENGGVSMLESPTGTGKTL 52 (929)
Q Consensus 19 py~~Q~~~M~~v~~~~~~~~~~~~esptgtgktl 52 (929)
.+-.|...++.+..++..+.+.+|.+|+|||||.
T Consensus 28 ~i~g~~~~~~~l~~~l~~~~~vll~G~pGtGKT~ 61 (331)
T 2r44_A 28 VVVGQKYMINRLLIGICTGGHILLEGVPGLAKTL 61 (331)
T ss_dssp TCCSCHHHHHHHHHHHHHTCCEEEESCCCHHHHH
T ss_pred ceeCcHHHHHHHHHHHHcCCeEEEECCCCCcHHH
Confidence 3446788899999999999999999999999995
No 127
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=86.75 E-value=2 Score=54.09 Aligned_cols=42 Identities=17% Similarity=0.198 Sum_probs=27.9
Q ss_pred hHHHHHHHHHHHHHhhc---------cCCCeEEEccCHHHHHHHHHHHHhc
Q 002378 667 SAMIEELGLLLCNLVSV---------VPEGIIVFFPSFEYVERVYGAWKSL 708 (929)
Q Consensus 667 ~~~~~~l~~~i~~~~~~---------vpgg~LVfFpSy~~l~~~~~~w~~~ 708 (929)
+.-+..++..|.+.... .++..+||.+|......+++.++..
T Consensus 510 ~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~ 560 (1038)
T 2w00_A 510 PMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRL 560 (1038)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhh
Confidence 44455666655543321 2246899999999999988887654
No 128
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=86.69 E-value=0.56 Score=46.84 Aligned_cols=32 Identities=16% Similarity=0.007 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHcC------CceeeeCCCCCcchHH
Q 002378 22 IQTDFMKALYCSLENG------GVSMLESPTGTGKTLS 53 (929)
Q Consensus 22 ~Q~~~M~~v~~~~~~~------~~~~~esptgtgktl~ 53 (929)
.|...++.+.+.+... ...+|.+|+|||||.-
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~l 70 (202)
T 2w58_A 33 GRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYL 70 (202)
T ss_dssp HHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHH
T ss_pred hHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHH
Confidence 6777777777777765 7899999999999963
No 129
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=86.49 E-value=0.24 Score=59.68 Aligned_cols=17 Identities=29% Similarity=0.481 Sum_probs=16.1
Q ss_pred cCCceeeeCCCCCcchH
Q 002378 36 NGGVSMLESPTGTGKTL 52 (929)
Q Consensus 36 ~~~~~~~esptgtgktl 52 (929)
+|+++|+.+|||+|||+
T Consensus 154 ~rk~vlv~apTGSGKT~ 170 (677)
T 3rc3_A 154 QRKIIFHSGPTNSGKTY 170 (677)
T ss_dssp CCEEEEEECCTTSSHHH
T ss_pred CCCEEEEEcCCCCCHHH
Confidence 68899999999999998
No 130
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=86.22 E-value=0.39 Score=45.52 Aligned_cols=20 Identities=10% Similarity=0.097 Sum_probs=16.7
Q ss_pred HHHcCCceeeeCCCCCcchH
Q 002378 33 SLENGGVSMLESPTGTGKTL 52 (929)
Q Consensus 33 ~~~~~~~~~~esptgtgktl 52 (929)
....+.+++|.+|+|||||.
T Consensus 23 ~~~~~~~vll~G~~GtGKt~ 42 (143)
T 3co5_A 23 AAKRTSPVFLTGEAGSPFET 42 (143)
T ss_dssp HHTCSSCEEEEEETTCCHHH
T ss_pred HhCCCCcEEEECCCCccHHH
Confidence 34567889999999999994
No 131
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=86.12 E-value=0.61 Score=50.97 Aligned_cols=37 Identities=19% Similarity=0.212 Sum_probs=32.2
Q ss_pred CCHHHHHHHHHHHHHHHcCCc---eeeeCCCCCcchHHHH
Q 002378 19 PYSIQTDFMKALYCSLENGGV---SMLESPTGTGKTLSII 55 (929)
Q Consensus 19 py~~Q~~~M~~v~~~~~~~~~---~~~esptgtgktl~~l 55 (929)
.||.|.+.++.+...+.+|+. .+|.||.|||||....
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~ 42 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIY 42 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHH
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHH
Confidence 599999999999999999853 7899999999995443
No 132
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=86.11 E-value=0.72 Score=55.26 Aligned_cols=46 Identities=24% Similarity=0.185 Sum_probs=38.0
Q ss_pred CCCCCHHHHHHHHHHHHHH-----HcCCceeeeCCCCCcchHHHHHHHHHh
Q 002378 16 PYKPYSIQTDFMKALYCSL-----ENGGVSMLESPTGTGKTLSIICSALQW 61 (929)
Q Consensus 16 Pf~py~~Q~~~M~~v~~~~-----~~~~~~~~esptgtgktl~~l~~~l~~ 61 (929)
...++|-|++..+.+++++ ..+..+||--|||+|||+..|......
T Consensus 53 ~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l 103 (644)
T 1z3i_X 53 SKVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTL 103 (644)
T ss_dssp HTTCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHH
T ss_pred hhcccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHH
Confidence 3468999999999999987 466789999999999999876655443
No 133
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=86.11 E-value=0.33 Score=56.32 Aligned_cols=31 Identities=19% Similarity=0.295 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHcCCceeeeCCCCCcchH
Q 002378 22 IQTDFMKALYCSLENGGVSMLESPTGTGKTL 52 (929)
Q Consensus 22 ~Q~~~M~~v~~~~~~~~~~~~esptgtgktl 52 (929)
.|...++.+..++..+.+.+|.||+|||||.
T Consensus 26 Gq~~~i~~l~~al~~~~~VLL~GpPGtGKT~ 56 (500)
T 3nbx_X 26 ERSHAIRLCLLAALSGESVFLLGPPGIAKSL 56 (500)
T ss_dssp SCHHHHHHHHHHHHHTCEEEEECCSSSSHHH
T ss_pred HHHHHHHHHHHHHhcCCeeEeecCchHHHHH
Confidence 5678889999999999999999999999995
No 134
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=86.06 E-value=0.53 Score=56.52 Aligned_cols=140 Identities=14% Similarity=0.092 Sum_probs=76.8
Q ss_pred hHHHHHHHHhhceEEEeccCCCChh-hHHHhhCCCCCCCceeeeecCCccCCCCceEEEeecCCCCCceeeeecccCChH
Q 002378 590 EKVFSEIVEQAHAVILAGGTLQPIE-ETRERLFPWLSPNKFHFFSCSHIVPPESILPVALSCGPTGKSFDFSYGSRSSSA 668 (929)
Q Consensus 590 s~~f~~l~~~~~svILtSGTLsP~~-~f~~~L~~~~~~~~i~~~~~~hvi~~~~~~~~iv~~gp~g~~l~~~y~~R~~~~ 668 (929)
+..|+.++.....+.-++||+.+-. .|....... .+. ||.+.-...+. -+ ..-|.+ ..+
T Consensus 399 ~IT~Qn~Fr~Y~kL~GMTGTa~te~~Ef~~iY~l~-------vv~----IPtnkp~~R~d--~~-----d~vy~t--~~e 458 (822)
T 3jux_A 399 TITFQNYFRMYEKLAGMTGTAKTEESEFVQVYGME-------VVV----IPTHKPMIRKD--HD-----DLVFRT--QKE 458 (822)
T ss_dssp EECHHHHHTTSSEEEEEESSCGGGHHHHHHHSCCC-------EEE----CCCSSCCCCEE--CC-----CEEESS--HHH
T ss_pred HHHHHHHHHHhhHHeEECCCCchHHHHHHHHhCCe-------EEE----ECCCCCcceee--cC-----cEEEec--HHH
Confidence 3457778888889999999998633 333222221 111 11111000000 00 012322 223
Q ss_pred HHHHHHHHHHHHhhccCCCeEEEccCHHHHHHHHHHHHhcChhHHhhcCccEEEcCCCCchHHHHHHHHHHHHhccCCCC
Q 002378 669 MIEELGLLLCNLVSVVPEGIIVFFPSFEYVERVYGAWKSLGILDRIMKKKHVFREPRGNTHVESVLKEYQKTIDTLSSRP 748 (929)
Q Consensus 669 ~~~~l~~~i~~~~~~vpgg~LVfFpSy~~l~~~~~~w~~~~~~~~l~~~K~if~E~~~~~~~~~~l~~y~~~i~~~~~~~ 748 (929)
-...+...|.... ..+..+|||+.|-...+.+...++..|+-. .++ -++ ....+..+-.+.-
T Consensus 459 K~~al~~~I~~~~-~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~------~vL-hgk-q~~rE~~ii~~ag--------- 520 (822)
T 3jux_A 459 KYEKIVEEIEKRY-KKGQPVLVGTTSIEKSELLSSMLKKKGIPH------QVL-NAK-YHEKEAEIVAKAG--------- 520 (822)
T ss_dssp HHHHHHHHHHHHH-HHTCCEEEEESSHHHHHHHHHHHHTTTCCC------EEE-CSC-HHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHHh-hCCCCEEEEECCHHHHHHHHHHHHHCCCCE------EEe-eCC-chHHHHHHHHhCC---------
Confidence 3445555454432 134569999999999999999998776421 122 222 1222332222211
Q ss_pred CCCCCCCCCcEEEEEecCccccccccC
Q 002378 749 KEDSTPLNGAMLLAVVGGKISEGINFS 775 (929)
Q Consensus 749 ~~~~~~~~gaiL~aV~rGk~sEGIDf~ 775 (929)
..|+|++|. .-.+.|+|++
T Consensus 521 ------~~g~VtVAT--dmAgRGtDI~ 539 (822)
T 3jux_A 521 ------QKGMVTIAT--NMAGRGTDIK 539 (822)
T ss_dssp ------STTCEEEEE--TTTTTTCCCC
T ss_pred ------CCCeEEEEc--chhhCCcCcc
Confidence 368999999 8999999997
No 135
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=85.84 E-value=0.46 Score=46.09 Aligned_cols=36 Identities=19% Similarity=0.171 Sum_probs=27.6
Q ss_pred CCCHHHHHHHHHHHHHHHc--CCceeeeCCCCCcchHH
Q 002378 18 KPYSIQTDFMKALYCSLEN--GGVSMLESPTGTGKTLS 53 (929)
Q Consensus 18 ~py~~Q~~~M~~v~~~~~~--~~~~~~esptgtgktl~ 53 (929)
+.+-.+...|+.+.+.+.. ..+++|.+|+|||||..
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~l 59 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAI 59 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHH
T ss_pred chhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHH
Confidence 3444566678888888876 46789999999999953
No 136
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=85.02 E-value=0.55 Score=55.93 Aligned_cols=37 Identities=24% Similarity=0.249 Sum_probs=28.5
Q ss_pred CHHHHHHHHHHHHHHHcCCceeeeCCCCCcch--HHHHHHHHH
Q 002378 20 YSIQTDFMKALYCSLENGGVSMLESPTGTGKT--LSIICSALQ 60 (929)
Q Consensus 20 y~~Q~~~M~~v~~~~~~~~~~~~esptgtgkt--l~~l~~~l~ 60 (929)
.+.|...+..+ ..+.+.++.+|+||||| ++.|+..|.
T Consensus 151 ~~~Q~~Ai~~~----l~~~~~vi~G~pGTGKTt~l~~ll~~l~ 189 (608)
T 1w36_D 151 INWQKVAAAVA----LTRRISVISGGPGTGKTTTVAKLLAALI 189 (608)
T ss_dssp CCHHHHHHHHH----HTBSEEEEECCTTSTHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHH----hcCCCEEEEeCCCCCHHHHHHHHHHHHH
Confidence 57898877654 36899999999999999 555655553
No 137
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=84.44 E-value=1.2 Score=54.91 Aligned_cols=41 Identities=17% Similarity=0.183 Sum_probs=36.7
Q ss_pred CCCHHHHHHHHHHHHHHHcCCceeeeCCCCCcchHHHHHHH
Q 002378 18 KPYSIQTDFMKALYCSLENGGVSMLESPTGTGKTLSIICSA 58 (929)
Q Consensus 18 ~py~~Q~~~M~~v~~~~~~~~~~~~esptgtgktl~~l~~~ 58 (929)
+++|-|++.+..++.....+..+||-.|||+|||+..|..+
T Consensus 236 ~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i 276 (800)
T 3mwy_W 236 ELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFI 276 (800)
T ss_dssp CCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHH
Confidence 58899999999999999999999999999999999865443
No 138
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=84.40 E-value=0.24 Score=49.77 Aligned_cols=39 Identities=26% Similarity=0.449 Sum_probs=23.4
Q ss_pred CCcEEEeccccccCHHHHHH----hCCCCCC-CEEEEeCCcChH
Q 002378 358 TADLVVLPYQSLLSKSARES----LGLNLKN-NIVIIDEAHNLA 396 (929)
Q Consensus 358 ~AdII~~pYnyLl~~~~R~~----l~i~l~~-~ivI~DEAHNL~ 396 (929)
.++|+|++|..|++...+.. ..+.+.+ .+|||||||++.
T Consensus 132 ~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~ 175 (216)
T 3b6e_A 132 SCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTN 175 (216)
T ss_dssp HCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC----
T ss_pred CCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhc
Confidence 47999999999876543211 1133333 799999999985
No 139
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=83.83 E-value=11 Score=45.37 Aligned_cols=37 Identities=30% Similarity=0.409 Sum_probs=29.7
Q ss_pred CCCCHHHHHHHHHHHHHHHcCCceeeeCCCCCcchHHHHHHHH
Q 002378 17 YKPYSIQTDFMKALYCSLENGGVSMLESPTGTGKTLSIICSAL 59 (929)
Q Consensus 17 f~py~~Q~~~M~~v~~~~~~~~~~~~esptgtgktl~~l~~~l 59 (929)
+.||++|+.--= +|..|+ |.|..||+||||+...+++
T Consensus 74 ~r~~dvQligg~----~L~~G~--iaEM~TGEGKTLva~lp~~ 110 (822)
T 3jux_A 74 MRPFDVQVMGGI----ALHEGK--VAEMKTGEGKTLAATMPIY 110 (822)
T ss_dssp CCCCHHHHHHHH----HHHTTC--EEECCTTSCHHHHTHHHHH
T ss_pred CCCcHHHHHHHH----HHhCCC--hhhccCCCCccHHHHHHHH
Confidence 459999986543 566777 8999999999998887765
No 140
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=83.76 E-value=0.65 Score=56.93 Aligned_cols=30 Identities=20% Similarity=0.297 Sum_probs=23.9
Q ss_pred HHHHHHHHcCCceeeeCCCCCcchHHHHHHHH
Q 002378 28 KALYCSLENGGVSMLESPTGTGKTLSIICSAL 59 (929)
Q Consensus 28 ~~v~~~~~~~~~~~~esptgtgktl~~l~~~l 59 (929)
..+..+|..+++.++.+|||+|||+ +++.+
T Consensus 100 ~~i~~~l~~~~~vii~gpTGSGKTt--llp~l 129 (773)
T 2xau_A 100 DEFLKLYQNNQIMVFVGETGSGKTT--QIPQF 129 (773)
T ss_dssp HHHHHHHHHCSEEEEECCTTSSHHH--HHHHH
T ss_pred HHHHHHHhCCCeEEEECCCCCCHHH--HHHHH
Confidence 3456678889999999999999999 44444
No 141
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=83.63 E-value=0.59 Score=51.59 Aligned_cols=30 Identities=37% Similarity=0.443 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHH-----------------cCCceeeeCCCCCcchH
Q 002378 23 QTDFMKALYCSLE-----------------NGGVSMLESPTGTGKTL 52 (929)
Q Consensus 23 Q~~~M~~v~~~~~-----------------~~~~~~~esptgtgktl 52 (929)
|...|+.|..++. .+.+.+|.+|+|||||+
T Consensus 20 ~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~ 66 (363)
T 3hws_A 20 QEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTL 66 (363)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHH
T ss_pred HHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHH
Confidence 5667777777773 45789999999999997
No 142
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=83.01 E-value=0.61 Score=49.27 Aligned_cols=42 Identities=29% Similarity=0.303 Sum_probs=27.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHH---------------HcCCceeeeCCCCCcchHH
Q 002378 12 FPAFPYKPYSIQTDFMKALYCSL---------------ENGGVSMLESPTGTGKTLS 53 (929)
Q Consensus 12 ~~~FPf~py~~Q~~~M~~v~~~~---------------~~~~~~~~esptgtgktl~ 53 (929)
.+.+.|+....+...|+.+.+.+ ..+...+|.||+|||||..
T Consensus 11 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~l 67 (285)
T 3h4m_A 11 RPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLL 67 (285)
T ss_dssp SCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHH
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHH
Confidence 44466665445555555555444 3457899999999999953
No 143
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=82.43 E-value=0.45 Score=49.89 Aligned_cols=31 Identities=16% Similarity=0.138 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHH----HHcCCceeeeCCCCCcchH
Q 002378 22 IQTDFMKALYCS----LENGGVSMLESPTGTGKTL 52 (929)
Q Consensus 22 ~Q~~~M~~v~~~----~~~~~~~~~esptgtgktl 52 (929)
.|-..|+.+++. ...+.+++|.+|+|||||.
T Consensus 10 g~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~ 44 (265)
T 2bjv_A 10 GEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKEL 44 (265)
T ss_dssp CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHH
T ss_pred eCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHH
Confidence 344445554443 4457889999999999995
No 144
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=82.39 E-value=1.8 Score=42.23 Aligned_cols=33 Identities=18% Similarity=0.169 Sum_probs=26.8
Q ss_pred CHHHHHHHHHHHHHHH-----cCCceeeeCCCCCcchH
Q 002378 20 YSIQTDFMKALYCSLE-----NGGVSMLESPTGTGKTL 52 (929)
Q Consensus 20 y~~Q~~~M~~v~~~~~-----~~~~~~~esptgtgktl 52 (929)
-+.|...++.+.+-+. .|...+|-+|+|||||.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTt 53 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTH 53 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHH
Confidence 3578888887777663 57889999999999995
No 145
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=82.39 E-value=0.55 Score=47.38 Aligned_cols=34 Identities=26% Similarity=0.271 Sum_probs=27.6
Q ss_pred CHHHHHHHHHHHHHHHcCC---ceeeeCCCCCcchHH
Q 002378 20 YSIQTDFMKALYCSLENGG---VSMLESPTGTGKTLS 53 (929)
Q Consensus 20 y~~Q~~~M~~v~~~~~~~~---~~~~esptgtgktl~ 53 (929)
+-.+...++.+...+..+. ..+|.+|+|||||..
T Consensus 25 ~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l 61 (250)
T 1njg_A 25 VVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSI 61 (250)
T ss_dssp CCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHH
T ss_pred HhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHH
Confidence 3456778888888888886 689999999999953
No 146
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=80.89 E-value=0.94 Score=49.30 Aligned_cols=30 Identities=13% Similarity=0.179 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHcC--CceeeeCCCCCcchHHH
Q 002378 25 DFMKALYCSLENG--GVSMLESPTGTGKTLSI 54 (929)
Q Consensus 25 ~~M~~v~~~~~~~--~~~~~esptgtgktl~~ 54 (929)
.++..|..++..+ .+.++-||+|||||+..
T Consensus 31 ~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v 62 (318)
T 3te6_A 31 RIFLPIYDSLMSSQNKLFYITNADDSTKFQLV 62 (318)
T ss_dssp HHHHHHHHHHHTTCCCEEEEECCCSHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCeEEEECCCCCCHHHHH
Confidence 3444566666544 67889999999999654
No 147
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=80.74 E-value=0.48 Score=47.30 Aligned_cols=38 Identities=26% Similarity=0.322 Sum_probs=26.7
Q ss_pred CCcEEEeccccccCHHHHHHhCCCCC-CCEEEEeCCcChHH
Q 002378 358 TADLVVLPYQSLLSKSARESLGLNLK-NNIVIIDEAHNLAD 397 (929)
Q Consensus 358 ~AdII~~pYnyLl~~~~R~~l~i~l~-~~ivI~DEAHNL~d 397 (929)
.++|||+++..|++...+.. +.+. -.+|||||||++.+
T Consensus 120 ~~~i~v~T~~~l~~~~~~~~--~~~~~~~~iViDEah~~~~ 158 (207)
T 2gxq_A 120 GADAVVATPGRALDYLRQGV--LDLSRVEVAVLDEADEMLS 158 (207)
T ss_dssp CCSEEEECHHHHHHHHHHTS--SCCTTCSEEEEESHHHHHH
T ss_pred CCCEEEECHHHHHHHHHcCC--cchhhceEEEEEChhHhhc
Confidence 46899999988776543322 2333 47999999999864
No 148
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=80.36 E-value=1.1 Score=47.64 Aligned_cols=31 Identities=35% Similarity=0.412 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHc----------------CCceeeeCCCCCcchHH
Q 002378 23 QTDFMKALYCSLEN----------------GGVSMLESPTGTGKTLS 53 (929)
Q Consensus 23 Q~~~M~~v~~~~~~----------------~~~~~~esptgtgktl~ 53 (929)
|...++.+..++.. ..+.+|.||+|||||..
T Consensus 20 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~l 66 (310)
T 1ofh_A 20 QADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEI 66 (310)
T ss_dssp CHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHH
T ss_pred hHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHH
Confidence 45566666666654 57899999999999953
No 149
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=80.16 E-value=1.3 Score=53.02 Aligned_cols=53 Identities=11% Similarity=0.074 Sum_probs=34.5
Q ss_pred CCCcEEEEEecCccccccccCCCc----------ceEEEEEccCCCCCCCHHHHHHHHHHhhc
Q 002378 755 LNGAMLLAVVGGKISEGINFSDGM----------GRCIVMVGLPYPSPSNIELLERIKHIEGL 807 (929)
Q Consensus 755 ~~gaiL~aV~rGk~sEGIDf~d~~----------~r~ViivGlPfp~~~d~~v~~k~~yl~~~ 807 (929)
....|+|+.+|..-.-+|.|-.+. =+.+||||=|---..++.++.-++|++++
T Consensus 569 E~dvII~S~vrsn~~~~iGFl~~~rRlNVAlTRAk~~liivGn~~~l~~~~~~~~li~~~~~~ 631 (646)
T 4b3f_X 569 EKEAVILSFVRSNRKGEVGFLAEDRRINVAVTRARRHVAVICDSRTVNNHAFLKTLVEYFTQH 631 (646)
T ss_dssp CEEEEEEECCCCCTTCCCCSTTCHHHHHHHHHTEEEEEEEEECHHHHTTSHHHHHHHHHHHHS
T ss_pred cCCEEEEEeccCCCCCCccccCCcCcEEeEhhhhhCeEEEEEchHHhcCCHHHHHHHHHHHHC
Confidence 456899998887666667887662 23688888443333456666666666654
No 150
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=80.09 E-value=0.79 Score=48.96 Aligned_cols=33 Identities=27% Similarity=0.367 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHcC-----------CceeeeCCCCCcchHHH
Q 002378 22 IQTDFMKALYCSLENG-----------GVSMLESPTGTGKTLSI 54 (929)
Q Consensus 22 ~Q~~~M~~v~~~~~~~-----------~~~~~esptgtgktl~~ 54 (929)
.|...|+.+...+..+ .+.+|.+|+|||||...
T Consensus 21 G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la 64 (311)
T 4fcw_A 21 GQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELA 64 (311)
T ss_dssp SCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHH
T ss_pred CHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHH
Confidence 5667777777777765 47899999999999543
No 151
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=80.08 E-value=0.81 Score=45.52 Aligned_cols=32 Identities=28% Similarity=0.377 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHcC--CceeeeCCCCCcchHH
Q 002378 22 IQTDFMKALYCSLENG--GVSMLESPTGTGKTLS 53 (929)
Q Consensus 22 ~Q~~~M~~v~~~~~~~--~~~~~esptgtgktl~ 53 (929)
.+...++.+.+.+..+ .+.+|.||+|||||..
T Consensus 21 g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l 54 (226)
T 2chg_A 21 GQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTAT 54 (226)
T ss_dssp SCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHH
T ss_pred CcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHH
Confidence 4667788888888877 3599999999999953
No 152
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=78.89 E-value=1.3 Score=47.51 Aligned_cols=35 Identities=26% Similarity=0.362 Sum_probs=29.1
Q ss_pred CHHHHHHHHHHHHHHHcCC--ceeeeCCCCCcchHHH
Q 002378 20 YSIQTDFMKALYCSLENGG--VSMLESPTGTGKTLSI 54 (929)
Q Consensus 20 y~~Q~~~M~~v~~~~~~~~--~~~~esptgtgktl~~ 54 (929)
.-.|...++.+...+..+. +.+|.||+|||||...
T Consensus 27 ~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la 63 (327)
T 1iqp_A 27 IVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAA 63 (327)
T ss_dssp CCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHH
T ss_pred hhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHH
Confidence 4457888889999998885 7999999999999643
No 153
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=78.86 E-value=0.82 Score=49.73 Aligned_cols=40 Identities=30% Similarity=0.399 Sum_probs=26.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHH--cCCceeeeCCCCCcchH
Q 002378 13 PAFPYKPYSIQTDFMKALYCSLE--NGGVSMLESPTGTGKTL 52 (929)
Q Consensus 13 ~~FPf~py~~Q~~~M~~v~~~~~--~~~~~~~esptgtgktl 52 (929)
..++|+-.-.|...++.+...+. ...+.+|.||+|||||.
T Consensus 19 ~~~~f~~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~ 60 (350)
T 1g8p_A 19 PVFPFSAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKST 60 (350)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTH
T ss_pred CCCCchhccChHHHHHHHHHHhhCCCCceEEEECCCCccHHH
Confidence 34666644455555555444443 35679999999999995
No 154
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=78.78 E-value=0.39 Score=48.04 Aligned_cols=39 Identities=18% Similarity=0.292 Sum_probs=26.8
Q ss_pred CCCcEEEeccccccCHHHHHHhCCCC-CCCEEEEeCCcChHH
Q 002378 357 PTADLVVLPYQSLLSKSARESLGLNL-KNNIVIIDEAHNLAD 397 (929)
Q Consensus 357 ~~AdII~~pYnyLl~~~~R~~l~i~l-~~~ivI~DEAHNL~d 397 (929)
..++|||+++..|++...+. ...+ .-.+|||||||++.+
T Consensus 121 ~~~~i~v~T~~~l~~~~~~~--~~~~~~~~~lViDEah~~~~ 160 (206)
T 1vec_A 121 DTVHVVIATPGRILDLIKKG--VAKVDHVQMIVLDEADKLLS 160 (206)
T ss_dssp SCCSEEEECHHHHHHHHHTT--CSCCTTCCEEEEETHHHHTS
T ss_pred CCCCEEEeCHHHHHHHHHcC--CcCcccCCEEEEEChHHhHh
Confidence 35799999998886554221 1223 347899999999754
No 155
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=78.70 E-value=0.92 Score=49.02 Aligned_cols=30 Identities=27% Similarity=0.190 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHcCCceeeeCCCCCcchHH
Q 002378 24 TDFMKALYCSLENGGVSMLESPTGTGKTLS 53 (929)
Q Consensus 24 ~~~M~~v~~~~~~~~~~~~esptgtgktl~ 53 (929)
...++.+.+.+..|..+++.+|.|+|||--
T Consensus 18 ~~el~~L~~~l~~~~~v~i~G~~G~GKT~L 47 (350)
T 2qen_A 18 EEESRKLEESLENYPLTLLLGIRRVGKSSL 47 (350)
T ss_dssp HHHHHHHHHHHHHCSEEEEECCTTSSHHHH
T ss_pred HHHHHHHHHHHhcCCeEEEECCCcCCHHHH
Confidence 445566666777789999999999999953
No 156
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=78.31 E-value=1.1 Score=48.14 Aligned_cols=42 Identities=21% Similarity=0.297 Sum_probs=26.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHH---------------cCCceeeeCCCCCcchHH
Q 002378 12 FPAFPYKPYSIQTDFMKALYCSLE---------------NGGVSMLESPTGTGKTLS 53 (929)
Q Consensus 12 ~~~FPf~py~~Q~~~M~~v~~~~~---------------~~~~~~~esptgtgktl~ 53 (929)
.+...|+-.-.+...|+.+.+.+. .+...+|.+|+|||||+.
T Consensus 9 ~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~l 65 (301)
T 3cf0_A 9 VPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLL 65 (301)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHH
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHH
Confidence 344455533344445555555443 357789999999999963
No 157
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=78.21 E-value=1.2 Score=47.27 Aligned_cols=40 Identities=25% Similarity=0.156 Sum_probs=26.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHc--------------CCceeeeCCCCCcchHHH
Q 002378 15 FPYKPYSIQTDFMKALYCSLEN--------------GGVSMLESPTGTGKTLSI 54 (929)
Q Consensus 15 FPf~py~~Q~~~M~~v~~~~~~--------------~~~~~~esptgtgktl~~ 54 (929)
..|+-.-.|...|+.+.+.+.. +...+|.||+|||||...
T Consensus 18 ~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 18 VEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp CCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHH
T ss_pred CCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHH
Confidence 3344333455566666665532 578999999999999643
No 158
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=77.99 E-value=0.74 Score=50.07 Aligned_cols=35 Identities=29% Similarity=0.376 Sum_probs=29.0
Q ss_pred CHHHHHHHHHHHHHHHcC--CceeeeCCCCCcchHHH
Q 002378 20 YSIQTDFMKALYCSLENG--GVSMLESPTGTGKTLSI 54 (929)
Q Consensus 20 y~~Q~~~M~~v~~~~~~~--~~~~~esptgtgktl~~ 54 (929)
.-.|...++.+...+..+ .+.+|.||+|||||...
T Consensus 39 i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la 75 (353)
T 1sxj_D 39 VTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTI 75 (353)
T ss_dssp CCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHH
T ss_pred hhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHH
Confidence 345677888999999988 67999999999999643
No 159
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=77.91 E-value=2.1 Score=46.27 Aligned_cols=32 Identities=19% Similarity=0.152 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHc-----CCceeeeCCCCCcchHH
Q 002378 22 IQTDFMKALYCSLEN-----GGVSMLESPTGTGKTLS 53 (929)
Q Consensus 22 ~Q~~~M~~v~~~~~~-----~~~~~~esptgtgktl~ 53 (929)
.+...+..+.+.+.+ +.+.+|-||||||||.-
T Consensus 132 ~~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~L 168 (308)
T 2qgz_A 132 SRMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYL 168 (308)
T ss_dssp HHHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHH
T ss_pred HHHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHH
Confidence 455566666677775 68999999999999953
No 160
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=77.67 E-value=1.6 Score=47.51 Aligned_cols=34 Identities=26% Similarity=0.470 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHcCCc--eeeeCCCCCcchHHHH
Q 002378 22 IQTDFMKALYCSLENGGV--SMLESPTGTGKTLSII 55 (929)
Q Consensus 22 ~Q~~~M~~v~~~~~~~~~--~~~esptgtgktl~~l 55 (929)
.|...++.+-..+..|.. .+|.||.|||||....
T Consensus 29 g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~ 64 (340)
T 1sxj_C 29 GQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIV 64 (340)
T ss_dssp SCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHH
T ss_pred CcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHH
Confidence 377888999999999976 9999999999995544
No 161
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=76.67 E-value=1.5 Score=47.03 Aligned_cols=34 Identities=32% Similarity=0.280 Sum_probs=23.9
Q ss_pred CHHHHHHHHHHHHHHH-------cCCceeeeCCCCCcchHH
Q 002378 20 YSIQTDFMKALYCSLE-------NGGVSMLESPTGTGKTLS 53 (929)
Q Consensus 20 y~~Q~~~M~~v~~~~~-------~~~~~~~esptgtgktl~ 53 (929)
+-.|...|+.+...+. ...+.+|.+|+|||||..
T Consensus 14 ~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~l 54 (324)
T 1hqc_A 14 YIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTL 54 (324)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHH
T ss_pred hhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHH
Confidence 3345556666666664 237899999999999953
No 162
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=76.60 E-value=1.2 Score=51.18 Aligned_cols=37 Identities=19% Similarity=0.196 Sum_probs=30.3
Q ss_pred CCCCHHHHHHHHHHHHHHHc--CCceeeeCCCCCcchHH
Q 002378 17 YKPYSIQTDFMKALYCSLEN--GGVSMLESPTGTGKTLS 53 (929)
Q Consensus 17 f~py~~Q~~~M~~v~~~~~~--~~~~~~esptgtgktl~ 53 (929)
++|.-.|..-|+.++..|.. +.+.||.||+|||||..
T Consensus 179 ld~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~l 217 (468)
T 3pxg_A 179 LDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAI 217 (468)
T ss_dssp SCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHH
T ss_pred CCCccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHH
Confidence 44666788889999999954 47899999999999964
No 163
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=76.12 E-value=0.81 Score=46.34 Aligned_cols=38 Identities=18% Similarity=0.271 Sum_probs=26.3
Q ss_pred CCcEEEeccccccCHHHHHHhCCCC-CCCEEEEeCCcChHH
Q 002378 358 TADLVVLPYQSLLSKSARESLGLNL-KNNIVIIDEAHNLAD 397 (929)
Q Consensus 358 ~AdII~~pYnyLl~~~~R~~l~i~l-~~~ivI~DEAHNL~d 397 (929)
.+||||+++..|++-..+ -.+.+ .-.+|||||||.+.+
T Consensus 126 ~~~Iiv~Tp~~l~~~l~~--~~~~~~~~~~lViDEah~~~~ 164 (219)
T 1q0u_A 126 QPHIVIGTPGRINDFIRE--QALDVHTAHILVVDEADLMLD 164 (219)
T ss_dssp CCSEEEECHHHHHHHHHT--TCCCGGGCCEEEECSHHHHHH
T ss_pred CCCEEEeCHHHHHHHHHc--CCCCcCcceEEEEcCchHHhh
Confidence 578999999888754321 12222 236899999998754
No 164
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=76.12 E-value=1.1 Score=46.73 Aligned_cols=17 Identities=47% Similarity=0.575 Sum_probs=14.1
Q ss_pred CCceeeeCCCCCcchHH
Q 002378 37 GGVSMLESPTGTGKTLS 53 (929)
Q Consensus 37 ~~~~~~esptgtgktl~ 53 (929)
....+|.||+|||||..
T Consensus 44 ~~~vll~G~~GtGKT~l 60 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLL 60 (268)
T ss_dssp CSCCCCBCSSCSSHHHH
T ss_pred CceEEEECCCCCcHHHH
Confidence 35688999999999953
No 165
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=76.06 E-value=0.91 Score=49.28 Aligned_cols=35 Identities=26% Similarity=0.310 Sum_probs=26.6
Q ss_pred CCHHHHHHHHHHHHHHHcC-------CceeeeCCCCCcchHH
Q 002378 19 PYSIQTDFMKALYCSLENG-------GVSMLESPTGTGKTLS 53 (929)
Q Consensus 19 py~~Q~~~M~~v~~~~~~~-------~~~~~esptgtgktl~ 53 (929)
-+-.|...|+.+...+... .+++|.+|+|||||..
T Consensus 30 ~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~l 71 (338)
T 3pfi_A 30 GYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTL 71 (338)
T ss_dssp GCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHH
T ss_pred HhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHH
Confidence 3446677777777777653 5899999999999964
No 166
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=75.28 E-value=1.3 Score=48.50 Aligned_cols=36 Identities=28% Similarity=0.250 Sum_probs=26.9
Q ss_pred CCCHHHHHHHHHHHHHH------HcCCceeeeCCCCCcchHH
Q 002378 18 KPYSIQTDFMKALYCSL------ENGGVSMLESPTGTGKTLS 53 (929)
Q Consensus 18 ~py~~Q~~~M~~v~~~~------~~~~~~~~esptgtgktl~ 53 (929)
+-+..+..-|+.+...| ..+.+.+|.||+|||||..
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l 60 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAV 60 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHH
Confidence 44556667777777766 3457899999999999964
No 167
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=74.51 E-value=3.1 Score=43.13 Aligned_cols=34 Identities=26% Similarity=0.287 Sum_probs=24.3
Q ss_pred CCHHHHHHHHHHHHHHHc-----------CCceeeeCCCCCcchH
Q 002378 19 PYSIQTDFMKALYCSLEN-----------GGVSMLESPTGTGKTL 52 (929)
Q Consensus 19 py~~Q~~~M~~v~~~~~~-----------~~~~~~esptgtgktl 52 (929)
-++.+.+-+..++..+.. ....+|.+|+|||||.
T Consensus 16 G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~ 60 (257)
T 1lv7_A 16 GCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTL 60 (257)
T ss_dssp SCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHH
T ss_pred CcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHH
Confidence 456666666666665543 4568899999999995
No 168
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=74.45 E-value=1.5 Score=47.59 Aligned_cols=43 Identities=23% Similarity=0.222 Sum_probs=30.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHH--------------cCCceeeeCCCCCcchHH
Q 002378 11 EFPAFPYKPYSIQTDFMKALYCSLE--------------NGGVSMLESPTGTGKTLS 53 (929)
Q Consensus 11 ~~~~FPf~py~~Q~~~M~~v~~~~~--------------~~~~~~~esptgtgktl~ 53 (929)
+.+...|+-+..|...++.|.+.+. .....+|.+|+|||||+.
T Consensus 11 ~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~l 67 (322)
T 3eie_A 11 EKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYL 67 (322)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHH
T ss_pred cCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHH
Confidence 3444556666667777777777662 135689999999999963
No 169
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=74.31 E-value=2.9 Score=42.23 Aligned_cols=31 Identities=19% Similarity=0.232 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHc--CCceeeeCCCCCcchHH
Q 002378 23 QTDFMKALYCSLEN--GGVSMLESPTGTGKTLS 53 (929)
Q Consensus 23 Q~~~M~~v~~~~~~--~~~~~~esptgtgktl~ 53 (929)
+...++.+...+.. +.+.+|.+|+|||||..
T Consensus 36 ~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~l 68 (242)
T 3bos_A 36 NDELIGALKSAASGDGVQAIYLWGPVKSGRTHL 68 (242)
T ss_dssp CHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHH
T ss_pred CHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHH
Confidence 35666667666664 68899999999999953
No 170
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=73.91 E-value=3.4 Score=49.14 Aligned_cols=34 Identities=26% Similarity=0.376 Sum_probs=26.7
Q ss_pred CCHHHHHHHHHHHHHHHcCCceeeeCCCCCcchHHHHH
Q 002378 19 PYSIQTDFMKALYCSLENGGVSMLESPTGTGKTLSIIC 56 (929)
Q Consensus 19 py~~Q~~~M~~v~~~~~~~~~~~~esptgtgktl~~l~ 56 (929)
.-+.|...+..++ .+...++.+|.|||||..+..
T Consensus 181 ln~~Q~~av~~~l----~~~~~li~GppGTGKT~~~~~ 214 (624)
T 2gk6_A 181 LNHSQVYAVKTVL----QRPLSLIQGPPGTGKTVTSAT 214 (624)
T ss_dssp CCHHHHHHHHHHH----TCSEEEEECCTTSCHHHHHHH
T ss_pred CCHHHHHHHHHHh----cCCCeEEECCCCCCHHHHHHH
Confidence 4578988877654 467899999999999986543
No 171
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=73.19 E-value=3.7 Score=42.35 Aligned_cols=35 Identities=23% Similarity=0.202 Sum_probs=24.9
Q ss_pred CCHHHHHHHHHHHHHHHc-----------CCceeeeCCCCCcchHH
Q 002378 19 PYSIQTDFMKALYCSLEN-----------GGVSMLESPTGTGKTLS 53 (929)
Q Consensus 19 py~~Q~~~M~~v~~~~~~-----------~~~~~~esptgtgktl~ 53 (929)
-++.+++-++.++..+.. ....+|.+|+|||||..
T Consensus 10 G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~l 55 (262)
T 2qz4_A 10 GMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLL 55 (262)
T ss_dssp SCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHH
T ss_pred CHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHH
Confidence 456666666666666543 34578999999999953
No 172
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=72.88 E-value=0.88 Score=48.17 Aligned_cols=38 Identities=21% Similarity=0.229 Sum_probs=26.4
Q ss_pred cCCCcEEEeccccccCHHHHHHhCCCCCCCEEEEeCCcChHH
Q 002378 356 VPTADLVVLPYQSLLSKSARESLGLNLKNNIVIIDEAHNLAD 397 (929)
Q Consensus 356 ~~~AdII~~pYnyLl~~~~R~~l~i~l~~~ivI~DEAHNL~d 397 (929)
...++|+|++|..|+.... .. .-.-.+|||||||++.+
T Consensus 202 ~~~~~I~v~T~~~l~~~~~-~~---~~~~~~vIiDEaH~~~~ 239 (282)
T 1rif_A 202 KNDAPVVVGTWQTVVKQPK-EW---FSQFGMMMNDECHLATG 239 (282)
T ss_dssp CTTCSEEEECHHHHTTSCG-GG---GGGEEEEEEETGGGCCH
T ss_pred ccCCcEEEEchHHHHhhHH-HH---HhhCCEEEEECCccCCc
Confidence 3678999999987765421 00 11226899999999963
No 173
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=72.78 E-value=0.9 Score=46.86 Aligned_cols=38 Identities=18% Similarity=0.318 Sum_probs=27.4
Q ss_pred CCcEEEeccccccCHHHHHHhCCCCC-CCEEEEeCCcChHH
Q 002378 358 TADLVVLPYQSLLSKSARESLGLNLK-NNIVIIDEAHNLAD 397 (929)
Q Consensus 358 ~AdII~~pYnyLl~~~~R~~l~i~l~-~~ivI~DEAHNL~d 397 (929)
.+||||++...|++-..+.. +.+. -.+|||||||.+.+
T Consensus 152 ~~~I~v~Tp~~l~~~l~~~~--~~~~~~~~lViDEah~l~~ 190 (242)
T 3fe2_A 152 GVEICIATPGRLIDFLECGK--TNLRRTTYLVLDEADRMLD 190 (242)
T ss_dssp CCSEEEECHHHHHHHHHHTS--CCCTTCCEEEETTHHHHHH
T ss_pred CCCEEEECHHHHHHHHHcCC--CCcccccEEEEeCHHHHhh
Confidence 37899999988877653322 2333 36899999999876
No 174
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=72.67 E-value=1.6 Score=53.20 Aligned_cols=36 Identities=19% Similarity=0.219 Sum_probs=30.7
Q ss_pred CCCCHHHHHHHHHHHHHHHcC--CceeeeCCCCCcchH
Q 002378 17 YKPYSIQTDFMKALYCSLENG--GVSMLESPTGTGKTL 52 (929)
Q Consensus 17 f~py~~Q~~~M~~v~~~~~~~--~~~~~esptgtgktl 52 (929)
++|.-.|...|+.++..|..+ .+.||.+|+|||||.
T Consensus 179 ld~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~ 216 (758)
T 3pxi_A 179 LDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTA 216 (758)
T ss_dssp SCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHH
T ss_pred CCCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHH
Confidence 456677899999999999654 689999999999996
No 175
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=72.47 E-value=3.2 Score=45.33 Aligned_cols=34 Identities=18% Similarity=0.209 Sum_probs=25.3
Q ss_pred CHHHHHHHHHHHHHHHcCC----ceeeeCCCCCcchHH
Q 002378 20 YSIQTDFMKALYCSLENGG----VSMLESPTGTGKTLS 53 (929)
Q Consensus 20 y~~Q~~~M~~v~~~~~~~~----~~~~esptgtgktl~ 53 (929)
.+.+...+..+.+.+..+. ..+|.||+|||||..
T Consensus 49 ~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~l 86 (368)
T 3uk6_A 49 QLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAI 86 (368)
T ss_dssp CHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHH
Confidence 3445555566788887764 689999999999964
No 176
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=71.75 E-value=2.4 Score=46.26 Aligned_cols=36 Identities=25% Similarity=0.270 Sum_probs=28.6
Q ss_pred CCHHHHHHHHHHHHHHHcCCc---eeeeCCCCCcchHHH
Q 002378 19 PYSIQTDFMKALYCSLENGGV---SMLESPTGTGKTLSI 54 (929)
Q Consensus 19 py~~Q~~~M~~v~~~~~~~~~---~~~esptgtgktl~~ 54 (929)
..-.|...++.+...+..+.. .+|.||.|||||...
T Consensus 17 ~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la 55 (373)
T 1jr3_A 17 DVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIA 55 (373)
T ss_dssp TSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHH
T ss_pred hccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHH
Confidence 344578888888889988763 689999999999543
No 177
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=71.73 E-value=0.7 Score=47.31 Aligned_cols=39 Identities=21% Similarity=0.155 Sum_probs=27.2
Q ss_pred CCCcEEEeccccccCHHHHHHhCCCCCC-CEEEEeCCcChHH
Q 002378 357 PTADLVVLPYQSLLSKSARESLGLNLKN-NIVIIDEAHNLAD 397 (929)
Q Consensus 357 ~~AdII~~pYnyLl~~~~R~~l~i~l~~-~ivI~DEAHNL~d 397 (929)
..++|||+++..|++-.-+ -.+.+.+ .+|||||||++.+
T Consensus 141 ~~~~Iiv~Tp~~l~~~~~~--~~~~~~~~~~lViDEah~~~~ 180 (230)
T 2oxc_A 141 KKCHIAVGSPGRIKQLIEL--DYLNPGSIRLFILDEADKLLE 180 (230)
T ss_dssp TSCSEEEECHHHHHHHHHT--TSSCGGGCCEEEESSHHHHHS
T ss_pred cCCCEEEECHHHHHHHHhc--CCcccccCCEEEeCCchHhhc
Confidence 4589999999988764321 1233333 5899999998854
No 178
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=71.62 E-value=2.1 Score=46.11 Aligned_cols=28 Identities=25% Similarity=0.440 Sum_probs=20.2
Q ss_pred HHHHHHHHH----HcCCceeeeCCCCCcchHH
Q 002378 26 FMKALYCSL----ENGGVSMLESPTGTGKTLS 53 (929)
Q Consensus 26 ~M~~v~~~~----~~~~~~~~esptgtgktl~ 53 (929)
.|+.+++.+ ....+++|.+|||||||+.
T Consensus 10 ~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~l 41 (304)
T 1ojl_A 10 AMQHLLNEIAMVAPSDATVLIHGDSGTGKELV 41 (304)
T ss_dssp HHHHHHHHHHHHCSTTSCEEEESCTTSCHHHH
T ss_pred HHHHHHHHHHHHhCCCCcEEEECCCCchHHHH
Confidence 344444444 4468899999999999953
No 179
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=71.55 E-value=0.8 Score=46.30 Aligned_cols=37 Identities=27% Similarity=0.349 Sum_probs=25.9
Q ss_pred CcEEEeccccccCHHHHHHhCCCCC-CCEEEEeCCcChHH
Q 002378 359 ADLVVLPYQSLLSKSARESLGLNLK-NNIVIIDEAHNLAD 397 (929)
Q Consensus 359 AdII~~pYnyLl~~~~R~~l~i~l~-~~ivI~DEAHNL~d 397 (929)
++|||+++..|++...+ ..+.+. -.+|||||||++.+
T Consensus 135 ~~i~v~T~~~l~~~~~~--~~~~~~~~~~lViDEah~~~~ 172 (220)
T 1t6n_A 135 PHIVVGTPGRILALARN--KSLNLKHIKHFILDECDKMLE 172 (220)
T ss_dssp CSEEEECHHHHHHHHHT--TSSCCTTCCEEEEESHHHHHS
T ss_pred CCEEEeCHHHHHHHHHh--CCCCcccCCEEEEcCHHHHhc
Confidence 58999999888765422 223333 37899999998853
No 180
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=71.34 E-value=2.6 Score=46.23 Aligned_cols=37 Identities=27% Similarity=0.318 Sum_probs=26.0
Q ss_pred CCCHHHHHHHHHHHHHHHc---C---C--ceeeeCCCCCcchHHH
Q 002378 18 KPYSIQTDFMKALYCSLEN---G---G--VSMLESPTGTGKTLSI 54 (929)
Q Consensus 18 ~py~~Q~~~M~~v~~~~~~---~---~--~~~~esptgtgktl~~ 54 (929)
+....+..-++.+...+.. + . +.++.||+|||||..+
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~ 61 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTL 61 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHH
Confidence 4455566666666666654 2 4 7999999999999654
No 181
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=71.03 E-value=1 Score=46.23 Aligned_cols=37 Identities=22% Similarity=0.288 Sum_probs=26.1
Q ss_pred CcEEEeccccccCHHHHHHhCCCCC-CCEEEEeCCcChHH
Q 002378 359 ADLVVLPYQSLLSKSARESLGLNLK-NNIVIIDEAHNLAD 397 (929)
Q Consensus 359 AdII~~pYnyLl~~~~R~~l~i~l~-~~ivI~DEAHNL~d 397 (929)
++|||+++..|++...+.. +.+. -.+|||||||.+.+
T Consensus 150 ~~Ilv~Tp~~l~~~l~~~~--~~~~~~~~lViDEah~~~~ 187 (237)
T 3bor_A 150 PHIVVGTPGRVFDMLNRRY--LSPKWIKMFVLDEADEMLS 187 (237)
T ss_dssp CSEEEECHHHHHHHHHTTS--SCSTTCCEEEEESHHHHHH
T ss_pred CCEEEECHHHHHHHHHhCC--cCcccCcEEEECCchHhhc
Confidence 7899999888776543222 2233 46899999998854
No 182
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=70.88 E-value=2.2 Score=48.73 Aligned_cols=35 Identities=37% Similarity=0.501 Sum_probs=29.2
Q ss_pred CCHHHHHHH---HHHHHHHHcCCc--eeeeCCCCCcchHH
Q 002378 19 PYSIQTDFM---KALYCSLENGGV--SMLESPTGTGKTLS 53 (929)
Q Consensus 19 py~~Q~~~M---~~v~~~~~~~~~--~~~esptgtgktl~ 53 (929)
-+-.|...| ..+...+..+.. .||.+|+|||||..
T Consensus 27 ~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtl 66 (447)
T 3pvs_A 27 QYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTL 66 (447)
T ss_dssp TCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHH
T ss_pred HhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHH
Confidence 455688888 888899998875 89999999999953
No 183
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=70.25 E-value=1.8 Score=44.80 Aligned_cols=36 Identities=31% Similarity=0.445 Sum_probs=26.2
Q ss_pred CCcEEEeccccccCHHHHHHhCCCCCCCEEEEeCCcChHH
Q 002378 358 TADLVVLPYQSLLSKSARESLGLNLKNNIVIIDEAHNLAD 397 (929)
Q Consensus 358 ~AdII~~pYnyLl~~~~R~~l~i~l~~~ivI~DEAHNL~d 397 (929)
.++|+|+.|..++.... .+. -.-.+|||||||++.+
T Consensus 171 ~~~i~v~T~~~l~~~~~--~~~--~~~~llIiDEaH~l~~ 206 (237)
T 2fz4_A 171 LKPLTVSTYDSAYVNAE--KLG--NRFMLLIFDEVHHLPA 206 (237)
T ss_dssp CCSEEEEEHHHHHHTHH--HHT--TTCSEEEEECSSCCCT
T ss_pred cCCEEEEeHHHHHhhHH--Hhc--ccCCEEEEECCccCCC
Confidence 57999999988765432 221 2357999999999964
No 184
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=70.17 E-value=3.5 Score=44.37 Aligned_cols=32 Identities=25% Similarity=0.130 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHcC----CceeeeCCCCCcchHH
Q 002378 22 IQTDFMKALYCSLENG----GVSMLESPTGTGKTLS 53 (929)
Q Consensus 22 ~Q~~~M~~v~~~~~~~----~~~~~esptgtgktl~ 53 (929)
.+...+..+...+... ...+|.||+|||||..
T Consensus 18 ~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~l 53 (324)
T 1l8q_A 18 GNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHL 53 (324)
T ss_dssp TTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHH
T ss_pred cHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHH
Confidence 4444555566666553 5799999999999953
No 185
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=69.82 E-value=1.7 Score=53.07 Aligned_cols=30 Identities=27% Similarity=0.333 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHcCC-----------ceeeeCCCCCcchH
Q 002378 23 QTDFMKALYCSLENGG-----------VSMLESPTGTGKTL 52 (929)
Q Consensus 23 Q~~~M~~v~~~~~~~~-----------~~~~esptgtgktl 52 (929)
|...|+.|.+++.... +.+|.||||||||.
T Consensus 496 q~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~ 536 (758)
T 3pxi_A 496 QDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTE 536 (758)
T ss_dssp CHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHH
T ss_pred hHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHH
Confidence 6778888888887543 58999999999995
No 186
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=69.73 E-value=1.9 Score=45.91 Aligned_cols=34 Identities=26% Similarity=0.354 Sum_probs=28.0
Q ss_pred CHHHHHHHHHHHHHHHcCC--ceeeeCCCCCcchHH
Q 002378 20 YSIQTDFMKALYCSLENGG--VSMLESPTGTGKTLS 53 (929)
Q Consensus 20 y~~Q~~~M~~v~~~~~~~~--~~~~esptgtgktl~ 53 (929)
.-.|...++.+...+..+. +.+|.||+|||||..
T Consensus 19 ~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~l 54 (319)
T 2chq_A 19 VVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTAT 54 (319)
T ss_dssp SCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHH
T ss_pred HhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHH
Confidence 3357888888888888875 699999999999954
No 187
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=69.15 E-value=2.8 Score=46.62 Aligned_cols=39 Identities=23% Similarity=0.174 Sum_probs=29.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHH--------------cCCceeeeCCCCCcchHH
Q 002378 15 FPYKPYSIQTDFMKALYCSLE--------------NGGVSMLESPTGTGKTLS 53 (929)
Q Consensus 15 FPf~py~~Q~~~M~~v~~~~~--------------~~~~~~~esptgtgktl~ 53 (929)
..|+-+-.|...|+.|.+.+. ...+.+|.+|+|||||+.
T Consensus 112 ~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~l 164 (389)
T 3vfd_A 112 VKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTML 164 (389)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHH
T ss_pred CChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHH
Confidence 445555667777887777762 247899999999999963
No 188
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=68.81 E-value=2.8 Score=46.08 Aligned_cols=37 Identities=22% Similarity=0.116 Sum_probs=25.4
Q ss_pred CCCCHHHHHHHHHHHHHHH--------------cCCceeeeCCCCCcchHH
Q 002378 17 YKPYSIQTDFMKALYCSLE--------------NGGVSMLESPTGTGKTLS 53 (929)
Q Consensus 17 f~py~~Q~~~M~~v~~~~~--------------~~~~~~~esptgtgktl~ 53 (929)
|+-.-.|...|+.|.+.+. ....++|.+|+|||||+.
T Consensus 83 ~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~l 133 (357)
T 3d8b_A 83 WEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLI 133 (357)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHH
T ss_pred HHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHH
Confidence 3333345666666666664 246789999999999964
No 189
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=68.44 E-value=4.7 Score=45.89 Aligned_cols=31 Identities=23% Similarity=0.320 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHcC----CceeeeCCCCCcchHH
Q 002378 23 QTDFMKALYCSLENG----GVSMLESPTGTGKTLS 53 (929)
Q Consensus 23 Q~~~M~~v~~~~~~~----~~~~~esptgtgktl~ 53 (929)
.+..+..+++.+..| ...+|.+|+|||||+.
T Consensus 45 ~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~l 79 (456)
T 2c9o_A 45 AREACGVIVELIKSKKMAGRAVLLAGPPGTGKTAL 79 (456)
T ss_dssp HHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHH
Confidence 334444566666666 4799999999999953
No 190
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=68.27 E-value=1.4 Score=46.12 Aligned_cols=39 Identities=26% Similarity=0.377 Sum_probs=27.4
Q ss_pred CCcEEEeccccccCHHHHHHhCCCCC-CCEEEEeCCcChHH
Q 002378 358 TADLVVLPYQSLLSKSARESLGLNLK-NNIVIIDEAHNLAD 397 (929)
Q Consensus 358 ~AdII~~pYnyLl~~~~R~~l~i~l~-~~ivI~DEAHNL~d 397 (929)
.++|||++...|++...+ .-++.+. -.+|||||||.+.+
T Consensus 176 ~~~Iiv~Tp~~l~~~~~~-~~~~~~~~l~~lViDEah~l~~ 215 (262)
T 3ly5_A 176 GINIIVATPGRLLDHMQN-TPGFMYKNLQCLVIDEADRILD 215 (262)
T ss_dssp CCSEEEECHHHHHHHHHH-CTTCCCTTCCEEEECSHHHHHH
T ss_pred CCCEEEEcHHHHHHHHHc-cCCcccccCCEEEEcChHHHhh
Confidence 478999998888665432 2223444 37899999998766
No 191
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=68.10 E-value=3.2 Score=45.52 Aligned_cols=33 Identities=21% Similarity=0.289 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHc------CCceeeeCCCCCcchHHH
Q 002378 22 IQTDFMKALYCSLEN------GGVSMLESPTGTGKTLSI 54 (929)
Q Consensus 22 ~Q~~~M~~v~~~~~~------~~~~~~esptgtgktl~~ 54 (929)
.+..-|+.+...|.. ..+.+|.||+|||||...
T Consensus 24 gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la 62 (384)
T 2qby_B 24 FREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVS 62 (384)
T ss_dssp TCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHH
Confidence 445555555555543 467999999999999643
No 192
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=68.06 E-value=4.3 Score=43.12 Aligned_cols=16 Identities=31% Similarity=0.239 Sum_probs=13.9
Q ss_pred CceeeeCCCCCcchHH
Q 002378 38 GVSMLESPTGTGKTLS 53 (929)
Q Consensus 38 ~~~~~esptgtgktl~ 53 (929)
.+.+|.||+|||||..
T Consensus 68 ~~vll~G~~GtGKT~l 83 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTV 83 (309)
T ss_dssp CEEEEEECTTSSHHHH
T ss_pred ceEEEECCCCCCHHHH
Confidence 4689999999999954
No 193
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=66.87 E-value=5.6 Score=46.83 Aligned_cols=35 Identities=20% Similarity=0.209 Sum_probs=28.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHcCCceeeeCCCCCcchHH
Q 002378 15 FPYKPYSIQTDFMKALYCSLENGGVSMLESPTGTGKTLS 53 (929)
Q Consensus 15 FPf~py~~Q~~~M~~v~~~~~~~~~~~~esptgtgktl~ 53 (929)
|++..-+.|...+..+ ..+.+.++.+|.|||||..
T Consensus 186 ~~~~L~~~Q~~Av~~~----~~~~~~~I~G~pGTGKTt~ 220 (574)
T 3e1s_A 186 ARKGLSEEQASVLDQL----AGHRLVVLTGGPGTGKSTT 220 (574)
T ss_dssp TTTTCCHHHHHHHHHH----TTCSEEEEECCTTSCHHHH
T ss_pred hcCCCCHHHHHHHHHH----HhCCEEEEEcCCCCCHHHH
Confidence 3666778998887654 4678999999999999954
No 194
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=66.78 E-value=3.7 Score=44.07 Aligned_cols=35 Identities=17% Similarity=0.167 Sum_probs=26.8
Q ss_pred CHHHHHHHHHHHHHHHcCC---ceeeeCCCCCcchHHH
Q 002378 20 YSIQTDFMKALYCSLENGG---VSMLESPTGTGKTLSI 54 (929)
Q Consensus 20 y~~Q~~~M~~v~~~~~~~~---~~~~esptgtgktl~~ 54 (929)
+-.|...++.+...+..+. ..++.+|+|||||...
T Consensus 28 ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la 65 (324)
T 3u61_B 28 CILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVA 65 (324)
T ss_dssp SCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHH
T ss_pred HhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHH
Confidence 3466777888888888775 3577888999999654
No 195
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=66.09 E-value=3.9 Score=48.41 Aligned_cols=33 Identities=18% Similarity=0.168 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHcCCceeeeCCCCCcchHHH
Q 002378 22 IQTDFMKALYCSLENGGVSMLESPTGTGKTLSI 54 (929)
Q Consensus 22 ~Q~~~M~~v~~~~~~~~~~~~esptgtgktl~~ 54 (929)
.|...++.+-.++..|.+.+|.+|+|||||...
T Consensus 45 G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtla 77 (604)
T 3k1j_A 45 GQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLG 77 (604)
T ss_dssp SCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHH
T ss_pred CchhhHhhccccccCCCEEEEEeCCCCCHHHHH
Confidence 477889999999999999999999999999644
No 196
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=65.82 E-value=4.9 Score=48.17 Aligned_cols=42 Identities=29% Similarity=0.306 Sum_probs=36.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHcCC-ceeeeCCCCCcchHHHH
Q 002378 14 AFPYKPYSIQTDFMKALYCSLENGG-VSMLESPTGTGKTLSII 55 (929)
Q Consensus 14 ~FPf~py~~Q~~~M~~v~~~~~~~~-~~~~esptgtgktl~~l 55 (929)
.=||+|.+.|...+..+.+.+..|. ..++.+.||+|||+.+.
T Consensus 4 ~~~~~~~~~q~~ai~~l~~~~~~~~~~~~l~g~tgs~kt~~~a 46 (664)
T 1c4o_A 4 YRGPSPKGDQPKAIAGLVEALRDGERFVTLLGATGTGKTVTMA 46 (664)
T ss_dssp CCSCCCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHH
T ss_pred CCCCCCCCCChHHHHHHHHHHhcCCCcEEEEcCCCcHHHHHHH
Confidence 3478999999999999999999885 46788999999998653
No 197
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=63.72 E-value=3.5 Score=44.00 Aligned_cols=21 Identities=19% Similarity=0.291 Sum_probs=15.2
Q ss_pred CceeeeCCCCCcchHHHHHHHHH
Q 002378 38 GVSMLESPTGTGKTLSIICSALQ 60 (929)
Q Consensus 38 ~~~~~esptgtgktl~~l~~~l~ 60 (929)
..++|.+|+|||||. |+-+++
T Consensus 37 ~~lLl~GppGtGKT~--la~aiA 57 (293)
T 3t15_A 37 LILGIWGGKGQGKSF--QCELVF 57 (293)
T ss_dssp SEEEEEECTTSCHHH--HHHHHH
T ss_pred eEEEEECCCCCCHHH--HHHHHH
Confidence 456789999999996 444443
No 198
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=63.33 E-value=3.2 Score=41.93 Aligned_cols=18 Identities=22% Similarity=0.466 Sum_probs=14.3
Q ss_pred CCceeeeCCCCCcch-HHH
Q 002378 37 GGVSMLESPTGTGKT-LSI 54 (929)
Q Consensus 37 ~~~~~~esptgtgkt-l~~ 54 (929)
|...++-+|||+||| |++
T Consensus 34 g~~ilI~GpsGsGKStLA~ 52 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETAL 52 (205)
T ss_dssp TEEEEEECCCTTTTHHHHH
T ss_pred CEEEEEECCCCCCHHHHHH
Confidence 456789999999996 544
No 199
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=63.31 E-value=3 Score=43.71 Aligned_cols=24 Identities=29% Similarity=0.263 Sum_probs=17.7
Q ss_pred HHHHHH---c--CCceeeeCCCCCcchHH
Q 002378 30 LYCSLE---N--GGVSMLESPTGTGKTLS 53 (929)
Q Consensus 30 v~~~~~---~--~~~~~~esptgtgktl~ 53 (929)
+++.+. . ....+|.+|+|||||..
T Consensus 52 l~~~l~~~~~~~~~~vLl~G~~GtGKT~l 80 (272)
T 1d2n_A 52 LVQQTKNSDRTPLVSVLLEGPPHSGKTAL 80 (272)
T ss_dssp HHHHHHHCSSCSEEEEEEECSTTSSHHHH
T ss_pred HHHHHhccCCCCCeEEEEECCCCCcHHHH
Confidence 455554 2 25789999999999964
No 200
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=63.16 E-value=5.2 Score=44.07 Aligned_cols=17 Identities=47% Similarity=0.646 Sum_probs=14.6
Q ss_pred CCceeeeCCCCCcchHH
Q 002378 37 GGVSMLESPTGTGKTLS 53 (929)
Q Consensus 37 ~~~~~~esptgtgktl~ 53 (929)
..+.+|.+|+|||||..
T Consensus 72 ~~~ill~Gp~GtGKT~l 88 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLM 88 (376)
T ss_dssp CCCEEEECCTTSSHHHH
T ss_pred CCCEEEECCCCCCHHHH
Confidence 46799999999999953
No 201
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=62.82 E-value=7.2 Score=47.82 Aligned_cols=35 Identities=26% Similarity=0.390 Sum_probs=26.9
Q ss_pred CCHHHHHHHHHHHHHHHcCCceeeeCCCCCcchHHHHHH
Q 002378 19 PYSIQTDFMKALYCSLENGGVSMLESPTGTGKTLSIICS 57 (929)
Q Consensus 19 py~~Q~~~M~~v~~~~~~~~~~~~esptgtgktl~~l~~ 57 (929)
.-+.|...+..++ .+...++.+|.|||||..+...
T Consensus 361 Ln~~Q~~Av~~~l----~~~~~lI~GppGTGKT~~i~~~ 395 (802)
T 2xzl_A 361 LNSSQSNAVSHVL----QRPLSLIQGPPGTGKTVTSATI 395 (802)
T ss_dssp CCHHHHHHHHHHT----TCSEEEEECSTTSSHHHHHHHH
T ss_pred CCHHHHHHHHHHh----cCCCEEEECCCCCCHHHHHHHH
Confidence 3478998877553 4678999999999999775443
No 202
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=62.60 E-value=3.1 Score=45.80 Aligned_cols=39 Identities=21% Similarity=0.180 Sum_probs=25.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHH--------------cCCceeeeCCCCCcchHH
Q 002378 15 FPYKPYSIQTDFMKALYCSLE--------------NGGVSMLESPTGTGKTLS 53 (929)
Q Consensus 15 FPf~py~~Q~~~M~~v~~~~~--------------~~~~~~~esptgtgktl~ 53 (929)
..|+-.-.|...++.|.+.+. ....++|.+|+|||||+.
T Consensus 48 ~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~l 100 (355)
T 2qp9_X 48 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYL 100 (355)
T ss_dssp CCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHH
Confidence 344433345566666666652 135689999999999963
No 203
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=62.41 E-value=5.5 Score=48.82 Aligned_cols=34 Identities=26% Similarity=0.376 Sum_probs=26.2
Q ss_pred CCHHHHHHHHHHHHHHHcCCceeeeCCCCCcchHHHHH
Q 002378 19 PYSIQTDFMKALYCSLENGGVSMLESPTGTGKTLSIIC 56 (929)
Q Consensus 19 py~~Q~~~M~~v~~~~~~~~~~~~esptgtgktl~~l~ 56 (929)
.-+.|...+..++ .+...++.+|.|||||..+..
T Consensus 357 Ln~~Q~~Av~~~l----~~~~~lI~GppGTGKT~ti~~ 390 (800)
T 2wjy_A 357 LNHSQVYAVKTVL----QRPLSLIQGPPGTGKTVTSAT 390 (800)
T ss_dssp CCHHHHHHHHHHH----TSSEEEEECCTTSCHHHHHHH
T ss_pred CCHHHHHHHHHhc----cCCeEEEEcCCCCCHHHHHHH
Confidence 4578888777553 467899999999999976543
No 204
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=62.20 E-value=2.5 Score=51.43 Aligned_cols=32 Identities=31% Similarity=0.399 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHcC-----------CceeeeCCCCCcchHH
Q 002378 22 IQTDFMKALYCSLENG-----------GVSMLESPTGTGKTLS 53 (929)
Q Consensus 22 ~Q~~~M~~v~~~~~~~-----------~~~~~esptgtgktl~ 53 (929)
.|...|+.|..++... .+.+|.+|||||||..
T Consensus 462 g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~l 504 (758)
T 1r6b_X 462 GQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEV 504 (758)
T ss_dssp SCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHH
T ss_pred CHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHH
Confidence 3556676666666532 1689999999999953
No 205
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=62.00 E-value=3.5 Score=44.92 Aligned_cols=37 Identities=22% Similarity=0.253 Sum_probs=26.2
Q ss_pred CCCHHHHHHHHHHHHHHHc------CCceeeeCCCCCcchHHH
Q 002378 18 KPYSIQTDFMKALYCSLEN------GGVSMLESPTGTGKTLSI 54 (929)
Q Consensus 18 ~py~~Q~~~M~~v~~~~~~------~~~~~~esptgtgktl~~ 54 (929)
+....+..-|+.+.+.+.. +...++.||+|||||..+
T Consensus 20 ~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~ 62 (386)
T 2qby_A 20 DELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVV 62 (386)
T ss_dssp SCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHH
Confidence 3344556666666666663 578999999999999543
No 206
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=61.59 E-value=11 Score=38.87 Aligned_cols=35 Identities=26% Similarity=0.232 Sum_probs=23.6
Q ss_pred CCHHHHHHHHHHHHHHHc-----------CCceeeeCCCCCcchHH
Q 002378 19 PYSIQTDFMKALYCSLEN-----------GGVSMLESPTGTGKTLS 53 (929)
Q Consensus 19 py~~Q~~~M~~v~~~~~~-----------~~~~~~esptgtgktl~ 53 (929)
-++.+..-++.+...+.. .+..+|.+|+|||||.-
T Consensus 20 g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl 65 (254)
T 1ixz_A 20 GAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHL 65 (254)
T ss_dssp SCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHH
T ss_pred CcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHH
Confidence 455566666666665533 23478999999999953
No 207
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=61.19 E-value=2.8 Score=51.87 Aligned_cols=30 Identities=30% Similarity=0.485 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHcC-----------CceeeeCCCCCcchH
Q 002378 23 QTDFMKALYCSLENG-----------GVSMLESPTGTGKTL 52 (929)
Q Consensus 23 Q~~~M~~v~~~~~~~-----------~~~~~esptgtgktl 52 (929)
|...|+.|...+... .+.+|.||||||||.
T Consensus 563 ~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~ 603 (854)
T 1qvr_A 563 QDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTE 603 (854)
T ss_dssp CHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHH
T ss_pred cHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHH
Confidence 566777777777653 368999999999995
No 208
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=60.77 E-value=4.9 Score=45.60 Aligned_cols=40 Identities=20% Similarity=0.118 Sum_probs=26.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHHH--------------cCCceeeeCCCCCcchHH
Q 002378 14 AFPYKPYSIQTDFMKALYCSLE--------------NGGVSMLESPTGTGKTLS 53 (929)
Q Consensus 14 ~FPf~py~~Q~~~M~~v~~~~~--------------~~~~~~~esptgtgktl~ 53 (929)
...|+-.-.|...++.|.+.+. .....+|.||+|||||+.
T Consensus 130 ~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~l 183 (444)
T 2zan_A 130 NVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYL 183 (444)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHH
Confidence 3444434456666666666652 236789999999999954
No 209
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=60.62 E-value=5.4 Score=43.96 Aligned_cols=25 Identities=28% Similarity=0.323 Sum_probs=22.1
Q ss_pred HHHHHHHHcCCceeeeCCCCCcchH
Q 002378 28 KALYCSLENGGVSMLESPTGTGKTL 52 (929)
Q Consensus 28 ~~v~~~~~~~~~~~~esptgtgktl 52 (929)
+.+--++..|+..++-+|||+|||-
T Consensus 166 ~~l~~~i~~G~~i~ivG~sGsGKST 190 (361)
T 2gza_A 166 SFLRRAVQLERVIVVAGETGSGKTT 190 (361)
T ss_dssp HHHHHHHHTTCCEEEEESSSSCHHH
T ss_pred HHHHHHHhcCCEEEEECCCCCCHHH
Confidence 6666788999999999999999993
No 210
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=60.60 E-value=5.7 Score=45.98 Aligned_cols=33 Identities=30% Similarity=0.244 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHc-------------------CCceeeeCCCCCcchHHH
Q 002378 22 IQTDFMKALYCSLEN-------------------GGVSMLESPTGTGKTLSI 54 (929)
Q Consensus 22 ~Q~~~M~~v~~~~~~-------------------~~~~~~esptgtgktl~~ 54 (929)
.|...++.+...|.. ....+|.||+|||||...
T Consensus 43 G~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla 94 (516)
T 1sxj_A 43 GNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAA 94 (516)
T ss_dssp SCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHH
T ss_pred CCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHH
Confidence 466677777777765 268999999999999643
No 211
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=59.54 E-value=4.5 Score=43.00 Aligned_cols=32 Identities=22% Similarity=0.271 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHcCC--ceeeeCCCCCcchHH
Q 002378 22 IQTDFMKALYCSLENGG--VSMLESPTGTGKTLS 53 (929)
Q Consensus 22 ~Q~~~M~~v~~~~~~~~--~~~~esptgtgktl~ 53 (929)
.|...++.+...+..+. +.+|.||.|||||..
T Consensus 25 g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~l 58 (323)
T 1sxj_B 25 GNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTS 58 (323)
T ss_dssp SCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHH
Confidence 57778888888898874 589999999999954
No 212
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=59.31 E-value=6.5 Score=54.30 Aligned_cols=38 Identities=16% Similarity=0.134 Sum_probs=31.8
Q ss_pred CCCCHHHHHHHHHHHHHHHcCCceeeeCCCCCcchHHH
Q 002378 17 YKPYSIQTDFMKALYCSLENGGVSMLESPTGTGKTLSI 54 (929)
Q Consensus 17 f~py~~Q~~~M~~v~~~~~~~~~~~~esptgtgktl~~ 54 (929)
+.|-+.+..-+-.+|+++.....+++-||||||||.++
T Consensus 903 l~~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~ 940 (2695)
T 4akg_A 903 FSMSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATW 940 (2695)
T ss_dssp CCCCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHH
T ss_pred CcccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHH
Confidence 44566666777789999999999999999999999864
No 213
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=59.13 E-value=5.8 Score=45.97 Aligned_cols=28 Identities=21% Similarity=0.343 Sum_probs=23.2
Q ss_pred HHHHHHHHHHcCCceeeeCCCCCcchHH
Q 002378 26 FMKALYCSLENGGVSMLESPTGTGKTLS 53 (929)
Q Consensus 26 ~M~~v~~~~~~~~~~~~esptgtgktl~ 53 (929)
.+..+.-++..|.+.++-||||+|||-.
T Consensus 249 ~l~~l~~~v~~g~~i~I~GptGSGKTTl 276 (511)
T 2oap_1 249 VLAYLWLAIEHKFSAIVVGETASGKTTT 276 (511)
T ss_dssp HHHHHHHHHHTTCCEEEEESTTSSHHHH
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 4556667888999999999999999943
No 214
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=58.97 E-value=5.2 Score=43.41 Aligned_cols=31 Identities=35% Similarity=0.453 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHcC-------CceeeeCCCCCcchHH
Q 002378 23 QTDFMKALYCSLENG-------GVSMLESPTGTGKTLS 53 (929)
Q Consensus 23 Q~~~M~~v~~~~~~~-------~~~~~esptgtgktl~ 53 (929)
|....+.+--.+..+ .+.+|-+|+|||||..
T Consensus 30 ~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTL 67 (334)
T 1in4_A 30 QENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTL 67 (334)
T ss_dssp CHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHH
T ss_pred cHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHH
Confidence 455566666666654 7899999999999853
No 215
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=58.60 E-value=7.8 Score=39.31 Aligned_cols=29 Identities=28% Similarity=0.337 Sum_probs=19.5
Q ss_pred HHHHHHHHHHcC---CceeeeCCCCCcchHHH
Q 002378 26 FMKALYCSLENG---GVSMLESPTGTGKTLSI 54 (929)
Q Consensus 26 ~M~~v~~~~~~~---~~~~~esptgtgktl~~ 54 (929)
|+..+..-+..- ...+|-+|.|||||...
T Consensus 44 f~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a 75 (212)
T 1tue_A 44 FLGALKSFLKGTPKKNCLVFCGPANTGKSYFG 75 (212)
T ss_dssp HHHHHHHHHHTCTTCSEEEEESCGGGCHHHHH
T ss_pred HHHHHHHHHhcCCcccEEEEECCCCCCHHHHH
Confidence 355555544432 35888999999999644
No 216
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=58.25 E-value=6.8 Score=46.91 Aligned_cols=42 Identities=29% Similarity=0.413 Sum_probs=36.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHcCC-ceeeeCCCCCcchHHH
Q 002378 13 PAFPYKPYSIQTDFMKALYCSLENGG-VSMLESPTGTGKTLSI 54 (929)
Q Consensus 13 ~~FPf~py~~Q~~~M~~v~~~~~~~~-~~~~esptgtgktl~~ 54 (929)
..=||+|+.-|...+..+.+.|..|. ..++-+-||+|||+.+
T Consensus 7 ~~~~~~p~~~Q~~~i~~l~~~~~~~~~~~~l~g~~gs~k~~~~ 49 (661)
T 2d7d_A 7 LVSKYQPQGDQPKAIEKLVKGIQEGKKHQTLLGATGTGKTFTV 49 (661)
T ss_dssp CCCSCCCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHH
T ss_pred eecCCCCCCCCHHHHHHHHHHHhcCCCcEEEECcCCcHHHHHH
Confidence 34689999999999999999999986 4678899999999754
No 217
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=58.05 E-value=5.6 Score=43.00 Aligned_cols=16 Identities=38% Similarity=0.484 Sum_probs=13.9
Q ss_pred CceeeeCCCCCcchHH
Q 002378 38 GVSMLESPTGTGKTLS 53 (929)
Q Consensus 38 ~~~~~esptgtgktl~ 53 (929)
+..+|.+|+|||||+.
T Consensus 46 ~~iLL~GppGtGKT~l 61 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYL 61 (322)
T ss_dssp SEEEEESSSSSCHHHH
T ss_pred ceEEEECCCCccHHHH
Confidence 6789999999999953
No 218
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=57.71 E-value=5.6 Score=45.09 Aligned_cols=46 Identities=26% Similarity=0.354 Sum_probs=29.6
Q ss_pred CCCCCC---CCHHHHHHHHHHHHH-HHc-----------CCceeeeCCCCCcchHHHHHHHHH
Q 002378 13 PAFPYK---PYSIQTDFMKALYCS-LEN-----------GGVSMLESPTGTGKTLSIICSALQ 60 (929)
Q Consensus 13 ~~FPf~---py~~Q~~~M~~v~~~-~~~-----------~~~~~~esptgtgktl~~l~~~l~ 60 (929)
|...|+ -++-|++-++.++.- |.. .+-+||-||.|||||+ |+-+++
T Consensus 176 p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTl--lAkAiA 236 (437)
T 4b4t_L 176 GEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTL--LAKAVA 236 (437)
T ss_dssp CSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHH--HHHHHH
T ss_pred CCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHH--HHHHHH
Confidence 334454 466677666655544 332 3678899999999996 444444
No 219
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=57.41 E-value=5.6 Score=43.88 Aligned_cols=39 Identities=23% Similarity=0.286 Sum_probs=28.6
Q ss_pred CCCCHHHHHHHHHH----H-HHHHcCCce--eeeCCCCCcchHHHH
Q 002378 17 YKPYSIQTDFMKAL----Y-CSLENGGVS--MLESPTGTGKTLSII 55 (929)
Q Consensus 17 f~py~~Q~~~M~~v----~-~~~~~~~~~--~~esptgtgktl~~l 55 (929)
|.|...|.+..+.+ + +++++|.++ +.-+.||||||-+++
T Consensus 58 f~~~~~Q~~Vy~~~~~plv~~~~~~G~n~tifAYGqTGSGKTyTM~ 103 (360)
T 1ry6_A 58 FDDTVDNFTVYENTIKPLIIDLYENGCVCSCFAYGQTGSGKTYTML 103 (360)
T ss_dssp ECTTCCHHHHHHHHTHHHHHHHHHHCCEEEEEEECCTTSSHHHHHH
T ss_pred ecCCCCHHHHHHHHhhhhhhhhccCCceeEEEeeCCCCCCCCEEEe
Confidence 45777888877653 3 445568775 669999999998764
No 220
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=57.31 E-value=6.4 Score=42.32 Aligned_cols=33 Identities=9% Similarity=0.047 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHcCC--ceeeeCCCCCcchHHHH
Q 002378 23 QTDFMKALYCSLENGG--VSMLESPTGTGKTLSII 55 (929)
Q Consensus 23 Q~~~M~~v~~~~~~~~--~~~~esptgtgktl~~l 55 (929)
|.+.|+.+...|.+|+ +.||.||.|||||-...
T Consensus 2 ~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~ 36 (305)
T 2gno_A 2 AKDQLETLKRIIEKSEGISILINGEDLSYPREVSL 36 (305)
T ss_dssp --CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHH
Confidence 7788899999999886 68899999999985443
No 221
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=57.13 E-value=5.8 Score=40.67 Aligned_cols=33 Identities=21% Similarity=0.193 Sum_probs=22.9
Q ss_pred HHHHHcCCceeeeCCCCCcchHHHHHHHHHhHH
Q 002378 31 YCSLENGGVSMLESPTGTGKTLSIICSALQWVV 63 (929)
Q Consensus 31 ~~~~~~~~~~~~esptgtgktl~~l~~~l~~~~ 63 (929)
|..-..|...++.||+|+|||..+|-.+..+..
T Consensus 6 ~~~~~~G~i~litG~mGsGKTT~ll~~~~r~~~ 38 (223)
T 2b8t_A 6 AFSKKIGWIEFITGPMFAGKTAELIRRLHRLEY 38 (223)
T ss_dssp -----CCEEEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred hhccCCcEEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 334456788999999999999888777665543
No 222
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=56.67 E-value=7.4 Score=54.36 Aligned_cols=43 Identities=28% Similarity=0.361 Sum_probs=30.7
Q ss_pred CCHHHHHHHHHHHHHHHcCCceeeeCCCCCcchHHHHHHHHHhH
Q 002378 19 PYSIQTDFMKALYCSLENGGVSMLESPTGTGKTLSIICSALQWV 62 (929)
Q Consensus 19 py~~Q~~~M~~v~~~~~~~~~~~~esptgtgktl~~l~~~l~~~ 62 (929)
|..-=..+..-+...|..++.++|.||||||||.. +-.+|+.+
T Consensus 1286 PT~DTvR~~~ll~~ll~~~~pvLL~GptGtGKT~l-i~~~L~~l 1328 (3245)
T 3vkg_A 1286 PTVDTTRHVDVLHAWLSEHRPLILCGPPGSGKTMT-LTSTLRAF 1328 (3245)
T ss_dssp CCHHHHHHHHHHHHHHHTTCCCEEESSTTSSHHHH-HHHHGGGC
T ss_pred cchHHHHHHHHHHHHHHCCCcEEEECCCCCCHHHH-HHHHHHhC
Confidence 55554555555666788899999999999999953 34444443
No 223
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=56.52 E-value=3.7 Score=46.50 Aligned_cols=40 Identities=23% Similarity=0.293 Sum_probs=25.4
Q ss_pred CCHHHHHHHHHH-HHHHHc-----------CCceeeeCCCCCcchHHHHHHHHH
Q 002378 19 PYSIQTDFMKAL-YCSLEN-----------GGVSMLESPTGTGKTLSIICSALQ 60 (929)
Q Consensus 19 py~~Q~~~M~~v-~~~~~~-----------~~~~~~esptgtgktl~~l~~~l~ 60 (929)
-++-|++-++.. .--|.. .+-+||-||.|||||+ |+-+++
T Consensus 185 Gl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTl--lAkAiA 236 (434)
T 4b4t_M 185 GLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTL--LARACA 236 (434)
T ss_dssp SCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHH--HHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHH--HHHHHH
Confidence 456666665543 222332 3678999999999996 444554
No 224
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=56.41 E-value=6 Score=37.62 Aligned_cols=17 Identities=24% Similarity=0.370 Sum_probs=15.6
Q ss_pred cCCceeeeCCCCCcchH
Q 002378 36 NGGVSMLESPTGTGKTL 52 (929)
Q Consensus 36 ~~~~~~~esptgtgktl 52 (929)
.|...+|-+|+|+|||-
T Consensus 35 ~g~~~~l~G~~G~GKTt 51 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSH 51 (149)
T ss_dssp CCSEEEEESSSTTTTCH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 78999999999999984
No 225
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=56.24 E-value=6.8 Score=54.12 Aligned_cols=35 Identities=29% Similarity=0.348 Sum_probs=27.0
Q ss_pred CCHHHHHHHHHHHHHHHcCCceeeeCCCCCcchHH
Q 002378 19 PYSIQTDFMKALYCSLENGGVSMLESPTGTGKTLS 53 (929)
Q Consensus 19 py~~Q~~~M~~v~~~~~~~~~~~~esptgtgktl~ 53 (929)
|..--..+..-+-..+..++..+|.||||||||+.
T Consensus 1249 pT~DT~R~~~ll~~~l~~~~~vLL~GPpGtGKT~l 1283 (2695)
T 4akg_A 1249 PTIDTIKHEKIFYDLLNSKRGIILCGPPGSGKTMI 1283 (2695)
T ss_dssp CCHHHHHHHHHHHHHHHHTCEEEEECSTTSSHHHH
T ss_pred eccchHHHHHHHHHHHHCCCeEEEECCCCCCHHHH
Confidence 55545555555666788899999999999999963
No 226
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=56.03 E-value=4 Score=45.76 Aligned_cols=40 Identities=28% Similarity=0.333 Sum_probs=26.4
Q ss_pred CCHHHHHHHHHHHHH-HHc-----------CCceeeeCCCCCcchHHHHHHHHH
Q 002378 19 PYSIQTDFMKALYCS-LEN-----------GGVSMLESPTGTGKTLSIICSALQ 60 (929)
Q Consensus 19 py~~Q~~~M~~v~~~-~~~-----------~~~~~~esptgtgktl~~l~~~l~ 60 (929)
-++-|++-++.++.- |.. .+-+||-||.|||||+ |+-+++
T Consensus 152 Gl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTl--lAkAiA 203 (405)
T 4b4t_J 152 GLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTL--LARAVA 203 (405)
T ss_dssp SCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHH--HHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHH--HHHHHH
Confidence 456666666555443 322 3678999999999996 455554
No 227
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=54.66 E-value=3.5 Score=48.75 Aligned_cols=30 Identities=23% Similarity=0.240 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHcCC-------------ceeeeCCCCCcchH
Q 002378 23 QTDFMKALYCSLENGG-------------VSMLESPTGTGKTL 52 (929)
Q Consensus 23 Q~~~M~~v~~~~~~~~-------------~~~~esptgtgktl 52 (929)
|...-+.+.-+|..|. +.+|.||+|||||.
T Consensus 300 ~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~ 342 (595)
T 3f9v_A 300 HWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQ 342 (595)
T ss_dssp CHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHH
T ss_pred hHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHH
Confidence 4445555555566554 89999999999995
No 228
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=54.66 E-value=7.8 Score=44.63 Aligned_cols=38 Identities=26% Similarity=0.244 Sum_probs=24.6
Q ss_pred CCCCCHHHHHHHHHHHHHHH---------------cCCceeeeCCCCCcchHH
Q 002378 16 PYKPYSIQTDFMKALYCSLE---------------NGGVSMLESPTGTGKTLS 53 (929)
Q Consensus 16 Pf~py~~Q~~~M~~v~~~~~---------------~~~~~~~esptgtgktl~ 53 (929)
.|+..-.+...|+.|.+.+. ....++|.+|+|||||+.
T Consensus 202 ~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~l 254 (489)
T 3hu3_A 202 GYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLI 254 (489)
T ss_dssp CGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHH
T ss_pred CHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHH
Confidence 34434445555555555543 236789999999999973
No 229
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=54.50 E-value=11 Score=39.70 Aligned_cols=30 Identities=20% Similarity=0.031 Sum_probs=19.7
Q ss_pred HHHHHHHHHHcC---C-ceeeeCCCCCcchHHHH
Q 002378 26 FMKALYCSLENG---G-VSMLESPTGTGKTLSII 55 (929)
Q Consensus 26 ~M~~v~~~~~~~---~-~~~~esptgtgktl~~l 55 (929)
+...++.-+... + ..+|-||.|||||+-..
T Consensus 89 ~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 89 AASVFLGWATKKFGKRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp HHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHH
Confidence 334445455443 2 58899999999997443
No 230
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=53.15 E-value=1.1e+02 Score=37.22 Aligned_cols=93 Identities=18% Similarity=0.177 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHhhccCCCeEEEccCHHHHHHHHHHHHhcChhHHhhcCccEEEcCCCCchHHHHHHHHHHHHhccCCCCC
Q 002378 670 IEELGLLLCNLVSVVPEGIIVFFPSFEYVERVYGAWKSLGILDRIMKKKHVFREPRGNTHVESVLKEYQKTIDTLSSRPK 749 (929)
Q Consensus 670 ~~~l~~~i~~~~~~vpgg~LVfFpSy~~l~~~~~~w~~~~~~~~l~~~K~if~E~~~~~~~~~~l~~y~~~i~~~~~~~~ 749 (929)
...|...|.... ..+..+|||+.|-...+.+...++..|+- ....-++ ....+.. .+...
T Consensus 418 ~~al~~~i~~~~-~~~~pvLVft~s~~~se~Ls~~L~~~gi~-------~~vLhg~-~~~rEr~------ii~~a----- 477 (844)
T 1tf5_A 418 FKAVAEDVAQRY-MTGQPVLVGTVAVETSELISKLLKNKGIP-------HQVLNAK-NHEREAQ------IIEEA----- 477 (844)
T ss_dssp HHHHHHHHHHHH-HHTCCEEEEESCHHHHHHHHHHHHTTTCC-------CEEECSS-CHHHHHH------HHTTT-----
T ss_pred HHHHHHHHHHHH-hcCCcEEEEECCHHHHHHHHHHHHHCCCC-------EEEeeCC-ccHHHHH------HHHHc-----
Confidence 344444444332 23446999999999999999999887641 1222222 1122221 11111
Q ss_pred CCCCCCCCcEEEEEecCccccccccCCC------cceEEEEEccC
Q 002378 750 EDSTPLNGAMLLAVVGGKISEGINFSDG------MGRCIVMVGLP 788 (929)
Q Consensus 750 ~~~~~~~gaiL~aV~rGk~sEGIDf~d~------~~r~ViivGlP 788 (929)
...|+|++|. .-.+.|+|++.. .+-.||-.-+|
T Consensus 478 ----g~~g~VlIAT--dmAgRG~DI~l~~~V~~~ggl~VIn~d~p 516 (844)
T 1tf5_A 478 ----GQKGAVTIAT--NMAGRGTDIKLGEGVKELGGLAVVGTERH 516 (844)
T ss_dssp ----TSTTCEEEEE--TTSSTTCCCCCCTTSGGGTSEEEEESSCC
T ss_pred ----CCCCeEEEeC--CccccCcCccccchhhhcCCcEEEEecCC
Confidence 1368999999 899999999831 23355555555
No 231
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=52.67 E-value=4.7 Score=45.59 Aligned_cols=40 Identities=25% Similarity=0.320 Sum_probs=26.3
Q ss_pred CCHHHHHHHHHHHHH-HHc-----------CCceeeeCCCCCcchHHHHHHHHH
Q 002378 19 PYSIQTDFMKALYCS-LEN-----------GGVSMLESPTGTGKTLSIICSALQ 60 (929)
Q Consensus 19 py~~Q~~~M~~v~~~-~~~-----------~~~~~~esptgtgktl~~l~~~l~ 60 (929)
-++-|++-++..+.. +.. .+-.+|-||.|||||+ |+-+++
T Consensus 176 Gl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~--lakAiA 227 (428)
T 4b4t_K 176 GLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTM--LVKAVA 227 (428)
T ss_dssp SCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHH--HHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHH--HHHHHH
Confidence 466677666555443 322 2458999999999996 455554
No 232
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=52.63 E-value=15 Score=38.41 Aligned_cols=35 Identities=26% Similarity=0.232 Sum_probs=23.9
Q ss_pred CCHHHHHHHHHHHHHHHc-----------CCceeeeCCCCCcchHH
Q 002378 19 PYSIQTDFMKALYCSLEN-----------GGVSMLESPTGTGKTLS 53 (929)
Q Consensus 19 py~~Q~~~M~~v~~~~~~-----------~~~~~~esptgtgktl~ 53 (929)
-++.+..-++.+...+.. .+..+|.+|+|||||.-
T Consensus 44 g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl 89 (278)
T 1iy2_A 44 GAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHL 89 (278)
T ss_dssp SCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHH
T ss_pred ChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHH
Confidence 455666666666665543 23478999999999953
No 233
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=51.96 E-value=8.7 Score=41.77 Aligned_cols=27 Identities=26% Similarity=0.305 Sum_probs=22.9
Q ss_pred HHHHHHHHHHcCCceeeeCCCCCcchH
Q 002378 26 FMKALYCSLENGGVSMLESPTGTGKTL 52 (929)
Q Consensus 26 ~M~~v~~~~~~~~~~~~esptgtgktl 52 (929)
..+.+--++..|++.++-+|||+|||-
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTT 186 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTT 186 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHH
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHH
Confidence 455666678899999999999999995
No 234
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=51.15 E-value=9.1 Score=46.48 Aligned_cols=36 Identities=19% Similarity=0.177 Sum_probs=28.7
Q ss_pred CCCHHHHHHHHHHHHHHHc--CCceeeeCCCCCcchHH
Q 002378 18 KPYSIQTDFMKALYCSLEN--GGVSMLESPTGTGKTLS 53 (929)
Q Consensus 18 ~py~~Q~~~M~~v~~~~~~--~~~~~~esptgtgktl~ 53 (929)
+|.-.|...|+.+++.|.. +.+.+|.+|+|||||..
T Consensus 186 d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~l 223 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAI 223 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHH
T ss_pred CCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHH
Confidence 3445577788888888875 47899999999999964
No 235
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=50.98 E-value=8.2 Score=47.69 Aligned_cols=36 Identities=19% Similarity=0.207 Sum_probs=30.3
Q ss_pred CCCCHHHHHHHHHHHHHHHcC--CceeeeCCCCCcchH
Q 002378 17 YKPYSIQTDFMKALYCSLENG--GVSMLESPTGTGKTL 52 (929)
Q Consensus 17 f~py~~Q~~~M~~v~~~~~~~--~~~~~esptgtgktl 52 (929)
|+|+-.|...|+.+++.|..+ .+.+|.||+|||||.
T Consensus 169 ld~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~ 206 (854)
T 1qvr_A 169 LDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTA 206 (854)
T ss_dssp SCCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHH
T ss_pred CcccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHH
Confidence 456667888999999999875 479999999999996
No 236
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=50.29 E-value=5.3 Score=39.42 Aligned_cols=18 Identities=39% Similarity=0.634 Sum_probs=15.7
Q ss_pred HHcCCceeeeCCCCCcch
Q 002378 34 LENGGVSMLESPTGTGKT 51 (929)
Q Consensus 34 ~~~~~~~~~esptgtgkt 51 (929)
+..|...+|.+|+|+|||
T Consensus 3 i~~g~~i~l~G~~GsGKS 20 (207)
T 2j41_A 3 NEKGLLIVLSGPSGVGKG 20 (207)
T ss_dssp -CCCCEEEEECSTTSCHH
T ss_pred CCCCCEEEEECCCCCCHH
Confidence 567889999999999998
No 237
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=50.25 E-value=3 Score=44.65 Aligned_cols=41 Identities=15% Similarity=0.170 Sum_probs=27.1
Q ss_pred cCCCcEEEeccccccCHHHHHHhCCCCC-CCEEEEeCCcChHH
Q 002378 356 VPTADLVVLPYQSLLSKSARESLGLNLK-NNIVIIDEAHNLAD 397 (929)
Q Consensus 356 ~~~AdII~~pYnyLl~~~~R~~l~i~l~-~~ivI~DEAHNL~d 397 (929)
...+||||++..-|++-..+. -.+.+. -.+|||||||.+.+
T Consensus 208 ~~~~~IlV~TP~~l~~~l~~~-~~~~l~~l~~lVlDEad~l~~ 249 (300)
T 3fmo_B 208 KISEQIVIGTPGTVLDWCSKL-KFIDPKKIKVFVLDEADVMIA 249 (300)
T ss_dssp CCCCSEEEECHHHHHHHHTTT-CCCCGGGCSEEEETTHHHHHH
T ss_pred cCCCCEEEECHHHHHHHHHhc-CCCChhhceEEEEeCHHHHhh
Confidence 446799999987776554221 123333 36899999998864
No 238
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=49.96 E-value=5.2 Score=45.60 Aligned_cols=40 Identities=28% Similarity=0.298 Sum_probs=26.3
Q ss_pred CCHHHHHHHHHHHHH-H-----------HcCCceeeeCCCCCcchHHHHHHHHH
Q 002378 19 PYSIQTDFMKALYCS-L-----------ENGGVSMLESPTGTGKTLSIICSALQ 60 (929)
Q Consensus 19 py~~Q~~~M~~v~~~-~-----------~~~~~~~~esptgtgktl~~l~~~l~ 60 (929)
-++-|++-++.++.- | .-.+-+||-+|.|||||+ |+-+++
T Consensus 213 Gl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTl--LAkAiA 264 (467)
T 4b4t_H 213 GCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTL--CARAVA 264 (467)
T ss_dssp TCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHH--HHHHHH
T ss_pred cHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHH--HHHHHH
Confidence 466676666654432 2 124778999999999995 455554
No 239
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=49.69 E-value=16 Score=41.86 Aligned_cols=35 Identities=29% Similarity=0.273 Sum_probs=23.9
Q ss_pred CCHHHHHHHHHHHHHHHc-----------CCceeeeCCCCCcchHH
Q 002378 19 PYSIQTDFMKALYCSLEN-----------GGVSMLESPTGTGKTLS 53 (929)
Q Consensus 19 py~~Q~~~M~~v~~~~~~-----------~~~~~~esptgtgktl~ 53 (929)
-.+.+.+-++.++..+.+ .+.++|.+|+|||||+.
T Consensus 20 G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~L 65 (476)
T 2ce7_A 20 GAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLL 65 (476)
T ss_dssp SCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHH
T ss_pred CcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHH
Confidence 345555556666665543 25688999999999964
No 240
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=49.66 E-value=4.8 Score=40.49 Aligned_cols=14 Identities=43% Similarity=0.619 Sum_probs=12.2
Q ss_pred CCCEEEEeCCcChH
Q 002378 383 KNNIVIIDEAHNLA 396 (929)
Q Consensus 383 ~~~ivI~DEAHNL~ 396 (929)
++.||||||||++.
T Consensus 87 ~~~vliIDEAq~l~ 100 (199)
T 2r2a_A 87 IGSIVIVDEAQDVW 100 (199)
T ss_dssp TTCEEEETTGGGTS
T ss_pred CceEEEEEChhhhc
Confidence 38899999999983
No 241
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=49.53 E-value=5.5 Score=39.29 Aligned_cols=19 Identities=26% Similarity=0.658 Sum_probs=16.0
Q ss_pred HHcCCceeeeCCCCCcchH
Q 002378 34 LENGGVSMLESPTGTGKTL 52 (929)
Q Consensus 34 ~~~~~~~~~esptgtgktl 52 (929)
+..|....|-+|+|+|||-
T Consensus 4 m~~g~ii~l~Gp~GsGKST 22 (205)
T 3tr0_A 4 MNKANLFIISAPSGAGKTS 22 (205)
T ss_dssp -CCCCEEEEECCTTSCHHH
T ss_pred CCCCcEEEEECcCCCCHHH
Confidence 4578899999999999984
No 242
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=49.32 E-value=5.5 Score=39.06 Aligned_cols=26 Identities=19% Similarity=0.290 Sum_probs=18.8
Q ss_pred HHHHHHHHHcCCceeeeCCCCCcchH
Q 002378 27 MKALYCSLENGGVSMLESPTGTGKTL 52 (929)
Q Consensus 27 M~~v~~~~~~~~~~~~esptgtgktl 52 (929)
|......+..+..+++++|.|+|||-
T Consensus 2 ~~~~~~~~~~~~~I~l~G~~GsGKsT 27 (199)
T 2bwj_A 2 MGGFMEDLRKCKIIFIIGGPGSGKGT 27 (199)
T ss_dssp --CHHHHHHHSCEEEEEECTTSSHHH
T ss_pred CcccccccCCCCEEEEECCCCCCHHH
Confidence 33334455667899999999999983
No 243
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=49.30 E-value=8.2 Score=43.79 Aligned_cols=16 Identities=38% Similarity=0.476 Sum_probs=14.3
Q ss_pred CCceeeeCCCCCcchH
Q 002378 37 GGVSMLESPTGTGKTL 52 (929)
Q Consensus 37 ~~~~~~esptgtgktl 52 (929)
..+.+|.+|+|||||.
T Consensus 50 ~~~iLl~GppGtGKT~ 65 (444)
T 1g41_A 50 PKNILMIGPTGVGKTE 65 (444)
T ss_dssp CCCEEEECCTTSSHHH
T ss_pred CceEEEEcCCCCCHHH
Confidence 4789999999999996
No 244
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=48.66 E-value=5.9 Score=44.68 Aligned_cols=40 Identities=28% Similarity=0.242 Sum_probs=26.5
Q ss_pred CCHHHHHHHHHHHHH-HHc-----------CCceeeeCCCCCcchHHHHHHHHH
Q 002378 19 PYSIQTDFMKALYCS-LEN-----------GGVSMLESPTGTGKTLSIICSALQ 60 (929)
Q Consensus 19 py~~Q~~~M~~v~~~-~~~-----------~~~~~~esptgtgktl~~l~~~l~ 60 (929)
-++.|++-++..+.- |.. .+-+||-+|.|||||+ |+-+++
T Consensus 186 Gld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTl--LAkAiA 237 (437)
T 4b4t_I 186 GLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTL--LAKAVA 237 (437)
T ss_dssp SCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHH--HHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHH--HHHHHH
Confidence 466676666655543 322 3678999999999996 444444
No 245
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=47.89 E-value=80 Score=38.55 Aligned_cols=140 Identities=15% Similarity=0.042 Sum_probs=74.1
Q ss_pred HHHHHHHHhhceEEEeccCCCCh-hhHHHhhCCCCCCCceeeeecCCccCCCCceEEEeecCCCCCceeeeecccCChHH
Q 002378 591 KVFSEIVEQAHAVILAGGTLQPI-EETRERLFPWLSPNKFHFFSCSHIVPPESILPVALSCGPTGKSFDFSYGSRSSSAM 669 (929)
Q Consensus 591 ~~f~~l~~~~~svILtSGTLsP~-~~f~~~L~~~~~~~~i~~~~~~hvi~~~~~~~~iv~~gp~g~~l~~~y~~R~~~~~ 669 (929)
..++..+.-..-+.-++||+..- ..|....... .+. ||.+.-.... .-+ +.-|.+ ..+-
T Consensus 367 It~qnyfr~Y~kl~GmTGTa~te~~ef~~iY~l~-------vv~----IPtn~p~~R~--d~~-----d~v~~~--~~~K 426 (853)
T 2fsf_A 367 ITFQNYFRLYEKLAGMTGTADTEAFEFSSIYKLD-------TVV----VPTNRPMIRK--DLP-----DLVYMT--EAEK 426 (853)
T ss_dssp EEHHHHHTTSSEEEEEECTTCCCHHHHHHHHCCE-------EEE----CCCSSCCCCE--ECC-----CEEESS--HHHH
T ss_pred eehHHHHhhhhhhhcCCCCchhHHHHHHHHhCCc-------EEE----cCCCCCceee--cCC-----cEEEeC--HHHH
Confidence 34556666777889999999743 3444333221 111 2211100000 000 012222 1233
Q ss_pred HHHHHHHHHHHhhccCCCeEEEccCHHHHHHHHHHHHhcChhHHhhcCccEEEcCCCCchHHHHHHHHHHHHhccCCCCC
Q 002378 670 IEELGLLLCNLVSVVPEGIIVFFPSFEYVERVYGAWKSLGILDRIMKKKHVFREPRGNTHVESVLKEYQKTIDTLSSRPK 749 (929)
Q Consensus 670 ~~~l~~~i~~~~~~vpgg~LVfFpSy~~l~~~~~~w~~~~~~~~l~~~K~if~E~~~~~~~~~~l~~y~~~i~~~~~~~~ 749 (929)
...|...|.... ..+..+|||+.|-..-+.+...++..|+-. ...-.+ ....+..+ ....+
T Consensus 427 ~~al~~~i~~~~-~~gqpvLVft~sie~se~Ls~~L~~~gi~~-------~vLnak-~~~rEa~i-----ia~ag----- 487 (853)
T 2fsf_A 427 IQAIIEDIKERT-AKGQPVLVGTISIEKSELVSNELTKAGIKH-------NVLNAK-FHANEAAI-----VAQAG----- 487 (853)
T ss_dssp HHHHHHHHHHHH-TTTCCEEEEESSHHHHHHHHHHHHHTTCCC-------EECCTT-CHHHHHHH-----HHTTT-----
T ss_pred HHHHHHHHHHHh-cCCCCEEEEECcHHHHHHHHHHHHHCCCCE-------EEecCC-hhHHHHHH-----HHhcC-----
Confidence 344444443322 234469999999999999999998876411 122222 11122211 11121
Q ss_pred CCCCCCCCcEEEEEecCccccccccCC
Q 002378 750 EDSTPLNGAMLLAVVGGKISEGINFSD 776 (929)
Q Consensus 750 ~~~~~~~gaiL~aV~rGk~sEGIDf~d 776 (929)
..|+|++|. .-.+.|+|++.
T Consensus 488 -----r~G~VtIAT--nmAgRGtDI~l 507 (853)
T 2fsf_A 488 -----YPAAVTIAT--NMAGRGTDIVL 507 (853)
T ss_dssp -----STTCEEEEE--SCCSSCSCCCT
T ss_pred -----CCCeEEEec--ccccCCcCccC
Confidence 468999999 88899999997
No 246
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=47.72 E-value=6.6 Score=39.31 Aligned_cols=18 Identities=39% Similarity=0.656 Sum_probs=15.5
Q ss_pred HcCCceeeeCCCCCcchH
Q 002378 35 ENGGVSMLESPTGTGKTL 52 (929)
Q Consensus 35 ~~~~~~~~esptgtgktl 52 (929)
..|...+|-+|+|+|||-
T Consensus 6 ~~g~~i~l~GpsGsGKsT 23 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGT 23 (208)
T ss_dssp CCCCEEEEECCTTSCHHH
T ss_pred CCCcEEEEECcCCCCHHH
Confidence 357889999999999983
No 247
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=46.94 E-value=7 Score=38.73 Aligned_cols=20 Identities=25% Similarity=0.144 Sum_probs=15.6
Q ss_pred HHHcCCceeeeCCCCCcchH
Q 002378 33 SLENGGVSMLESPTGTGKTL 52 (929)
Q Consensus 33 ~~~~~~~~~~esptgtgktl 52 (929)
.+..++..+|.+|+|+|||-
T Consensus 21 ~~~~~~~i~l~G~~GsGKsT 40 (199)
T 3vaa_A 21 QSNAMVRIFLTGYMGAGKTT 40 (199)
T ss_dssp ---CCCEEEEECCTTSCHHH
T ss_pred ecCCCCEEEEEcCCCCCHHH
Confidence 45678899999999999984
No 248
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=46.86 E-value=9.4 Score=43.00 Aligned_cols=30 Identities=27% Similarity=0.504 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHcCCceeeeCCCCCcchHH
Q 002378 22 IQTDFMKALYCSLENGGVSMLESPTGTGKTLS 53 (929)
Q Consensus 22 ~Q~~~M~~v~~~~~~~~~~~~esptgtgktl~ 53 (929)
.+...++.++ ...|+..++-+|||+|||-.
T Consensus 154 ~~~~~L~~l~--~~~ggii~I~GpnGSGKTTl 183 (418)
T 1p9r_A 154 HNHDNFRRLI--KRPHGIILVTGPTGSGKSTT 183 (418)
T ss_dssp HHHHHHHHHH--TSSSEEEEEECSTTSCHHHH
T ss_pred HHHHHHHHHH--HhcCCeEEEECCCCCCHHHH
Confidence 3555666663 35677889999999999943
No 249
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=46.65 E-value=7.2 Score=38.03 Aligned_cols=17 Identities=18% Similarity=0.210 Sum_probs=14.9
Q ss_pred cCCceeeeCCCCCcchH
Q 002378 36 NGGVSMLESPTGTGKTL 52 (929)
Q Consensus 36 ~~~~~~~esptgtgktl 52 (929)
.|+..++-+|+|+|||-
T Consensus 4 ~g~~i~i~GpsGsGKST 20 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRH 20 (180)
T ss_dssp CCCEEEEECCTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 47889999999999994
No 250
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=45.96 E-value=6.1 Score=43.19 Aligned_cols=16 Identities=38% Similarity=0.476 Sum_probs=13.8
Q ss_pred CCceeeeCCCCCcchH
Q 002378 37 GGVSMLESPTGTGKTL 52 (929)
Q Consensus 37 ~~~~~~esptgtgktl 52 (929)
++.+++-+|||+|||-
T Consensus 40 ~~lIvI~GPTgsGKTt 55 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSR 55 (339)
T ss_dssp CEEEEEECSTTSSHHH
T ss_pred CceEEEECCCCCCHHH
Confidence 4578999999999993
No 251
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=45.67 E-value=7 Score=41.91 Aligned_cols=27 Identities=19% Similarity=0.193 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHcCCceeeeCCCCCcchHH
Q 002378 25 DFMKALYCSLENGGVSMLESPTGTGKTLS 53 (929)
Q Consensus 25 ~~M~~v~~~~~~~~~~~~esptgtgktl~ 53 (929)
.-++.+.+ +.. ..+++.+|.|+|||--
T Consensus 20 ~el~~L~~-l~~-~~v~i~G~~G~GKT~L 46 (357)
T 2fna_A 20 KEIEKLKG-LRA-PITLVLGLRRTGKSSI 46 (357)
T ss_dssp HHHHHHHH-TCS-SEEEEEESTTSSHHHH
T ss_pred HHHHHHHH-hcC-CcEEEECCCCCCHHHH
Confidence 34445555 555 6899999999999943
No 252
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=45.54 E-value=6.4 Score=42.62 Aligned_cols=16 Identities=31% Similarity=0.424 Sum_probs=13.6
Q ss_pred CCceeeeCCCCCcchH
Q 002378 37 GGVSMLESPTGTGKTL 52 (929)
Q Consensus 37 ~~~~~~esptgtgktl 52 (929)
++..++-+|||+|||-
T Consensus 3 ~~~i~i~GptgsGKt~ 18 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTK 18 (322)
T ss_dssp CEEEEEECCTTSCHHH
T ss_pred CcEEEEECCCcCCHHH
Confidence 4577899999999993
No 253
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=45.52 E-value=9.6 Score=38.84 Aligned_cols=34 Identities=32% Similarity=0.391 Sum_probs=24.3
Q ss_pred CCCcEEEeccccccCHHHHHHhCCCCCCCEEEEeCCcC
Q 002378 357 PTADLVVLPYQSLLSKSARESLGLNLKNNIVIIDEAHN 394 (929)
Q Consensus 357 ~~AdII~~pYnyLl~~~~R~~l~i~l~~~ivI~DEAHN 394 (929)
..++|||+....|++...+ + .-.-.+|||||||.
T Consensus 154 ~~~~Ivv~Tpg~l~~~l~~---~-l~~~~~lVlDEah~ 187 (235)
T 3llm_A 154 PHASIMFCTVGVLLRKLEA---G-IRGISHVIVDEIHE 187 (235)
T ss_dssp SSSEEEEEEHHHHHHHHHH---C-CTTCCEEEECCTTS
T ss_pred CCCeEEEECHHHHHHHHHh---h-hcCCcEEEEECCcc
Confidence 4689999998777665322 1 12337999999996
No 254
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=45.39 E-value=11 Score=37.47 Aligned_cols=28 Identities=21% Similarity=0.285 Sum_probs=22.4
Q ss_pred HcCCceeeeCCCCCcchHHHHHHHHHhH
Q 002378 35 ENGGVSMLESPTGTGKTLSIICSALQWV 62 (929)
Q Consensus 35 ~~~~~~~~esptgtgktl~~l~~~l~~~ 62 (929)
..|+..++.||.|+|||..+|-.+..+.
T Consensus 6 ~~g~i~v~~G~mgsGKTT~ll~~a~r~~ 33 (191)
T 1xx6_A 6 DHGWVEVIVGPMYSGKSEELIRRIRRAK 33 (191)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 3467889999999999988886665553
No 255
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=45.27 E-value=15 Score=41.43 Aligned_cols=31 Identities=16% Similarity=0.037 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHcC---CceeeeCCCCCcchHH
Q 002378 23 QTDFMKALYCSLENG---GVSMLESPTGTGKTLS 53 (929)
Q Consensus 23 Q~~~M~~v~~~~~~~---~~~~~esptgtgktl~ 53 (929)
+...+..+....... ...+|.||+|||||.-
T Consensus 113 n~~a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtL 146 (440)
T 2z4s_A 113 NSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHL 146 (440)
T ss_dssp THHHHHHHHHHHHSTTSSCCEEEECSSSSSHHHH
T ss_pred hHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHH
Confidence 334455555555553 4799999999999953
No 256
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=45.22 E-value=15 Score=51.30 Aligned_cols=46 Identities=24% Similarity=0.164 Sum_probs=35.9
Q ss_pred CCCCHHHHHHHHHHHHHHHcCCceeeeCCCCCcchHHH--HHHHHHhH
Q 002378 17 YKPYSIQTDFMKALYCSLENGGVSMLESPTGTGKTLSI--ICSALQWV 62 (929)
Q Consensus 17 f~py~~Q~~~M~~v~~~~~~~~~~~~esptgtgktl~~--l~~~l~~~ 62 (929)
+.|.|.|..=+-.+|+++.-..-.++-||||+|||-++ |..||+-+
T Consensus 886 L~~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~~L~~al~~l 933 (3245)
T 3vkg_A 886 LVTKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWEVYLEAIEQV 933 (3245)
T ss_dssp CCCCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHHHHHHHHTTT
T ss_pred CccCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 34666677777788999999999999999999999875 45555544
No 257
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=44.93 E-value=12 Score=40.82 Aligned_cols=40 Identities=23% Similarity=0.198 Sum_probs=29.1
Q ss_pred CCCCCCHHHHHHHHH----HHHHHHcCCce--eeeCCCCCcchHHH
Q 002378 15 FPYKPYSIQTDFMKA----LYCSLENGGVS--MLESPTGTGKTLSI 54 (929)
Q Consensus 15 FPf~py~~Q~~~M~~----v~~~~~~~~~~--~~esptgtgktl~~ 54 (929)
.=|.|...|.+.-+. +++.+.+|-++ +.-+.||||||-++
T Consensus 56 ~Vf~~~~~Q~~vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 56 VVLAEDAGQEAVYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp EEECTTCCHHHHHHHHTHHHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred EEEecCcchhHHHHHHHHHHHHHHHhhcCeeEEEecccCCCceEee
Confidence 334577788877655 56666778553 45899999999886
No 258
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=44.86 E-value=7.7 Score=37.60 Aligned_cols=17 Identities=24% Similarity=0.374 Sum_probs=14.4
Q ss_pred cCCceeeeCCCCCcchH
Q 002378 36 NGGVSMLESPTGTGKTL 52 (929)
Q Consensus 36 ~~~~~~~esptgtgktl 52 (929)
.+..++|++|.|+|||-
T Consensus 2 ~~~~I~i~G~~GsGKsT 18 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTT 18 (192)
T ss_dssp -CCEEEEECCTTSCHHH
T ss_pred CCeEEEEECCCCCCHHH
Confidence 36789999999999994
No 259
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=44.75 E-value=15 Score=36.89 Aligned_cols=24 Identities=21% Similarity=0.355 Sum_probs=20.4
Q ss_pred HHHHHHcCCceeeeCCCCCcchHH
Q 002378 30 LYCSLENGGVSMLESPTGTGKTLS 53 (929)
Q Consensus 30 v~~~~~~~~~~~~esptgtgktl~ 53 (929)
+++.+..|+...+-+|.|+|||--
T Consensus 15 ~l~~i~~Ge~~~liG~nGsGKSTL 38 (208)
T 3b85_A 15 YVDAIDTNTIVFGLGPAGSGKTYL 38 (208)
T ss_dssp HHHHHHHCSEEEEECCTTSSTTHH
T ss_pred HHHhccCCCEEEEECCCCCCHHHH
Confidence 556679999999999999999853
No 260
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=43.55 E-value=8 Score=36.61 Aligned_cols=15 Identities=27% Similarity=0.461 Sum_probs=13.0
Q ss_pred CceeeeCCCCCcchH
Q 002378 38 GVSMLESPTGTGKTL 52 (929)
Q Consensus 38 ~~~~~esptgtgktl 52 (929)
...++.||.|+|||-
T Consensus 2 ~~I~l~G~~GsGKsT 16 (179)
T 3lw7_A 2 KVILITGMPGSGKSE 16 (179)
T ss_dssp CEEEEECCTTSCHHH
T ss_pred cEEEEECCCCCCHHH
Confidence 467899999999994
No 261
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=43.15 E-value=14 Score=36.32 Aligned_cols=26 Identities=19% Similarity=0.418 Sum_probs=20.5
Q ss_pred cCCceeeeCCCCCcchHHHHHHHHHh
Q 002378 36 NGGVSMLESPTGTGKTLSIICSALQW 61 (929)
Q Consensus 36 ~~~~~~~esptgtgktl~~l~~~l~~ 61 (929)
.|...++.+|.|+|||..++-.+..+
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHH
Confidence 47788999999999998877555444
No 262
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=42.99 E-value=8.6 Score=37.24 Aligned_cols=16 Identities=31% Similarity=0.137 Sum_probs=14.2
Q ss_pred CCceeeeCCCCCcchH
Q 002378 37 GGVSMLESPTGTGKTL 52 (929)
Q Consensus 37 ~~~~~~esptgtgktl 52 (929)
+++++|.+|+|+|||-
T Consensus 5 ~~~i~l~G~~GsGKst 20 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTS 20 (185)
T ss_dssp CCEEEEECSTTSSHHH
T ss_pred CCEEEEECCCCCCHHH
Confidence 5789999999999983
No 263
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=42.94 E-value=9.8 Score=38.53 Aligned_cols=29 Identities=24% Similarity=0.216 Sum_probs=21.6
Q ss_pred HHHcCCceeeeCCCCCcchHHHHHHHHHh
Q 002378 33 SLENGGVSMLESPTGTGKTLSIICSALQW 61 (929)
Q Consensus 33 ~~~~~~~~~~esptgtgktl~~l~~~l~~ 61 (929)
.|..|...++.+|+|+|||.-.+.-+...
T Consensus 19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~~~ 47 (247)
T 2dr3_A 19 GIPERNVVLLSGGPGTGKTIFSQQFLWNG 47 (247)
T ss_dssp SEETTCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 45678899999999999997554444433
No 264
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=42.68 E-value=9 Score=38.46 Aligned_cols=18 Identities=17% Similarity=0.344 Sum_probs=15.7
Q ss_pred HcCCceeeeCCCCCcchH
Q 002378 35 ENGGVSMLESPTGTGKTL 52 (929)
Q Consensus 35 ~~~~~~~~esptgtgktl 52 (929)
..|+..+|.+|+|+|||-
T Consensus 17 ~~g~~ivl~GPSGaGKsT 34 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSH 34 (197)
T ss_dssp CSCCEEEEECCTTSSHHH
T ss_pred CCCCEEEEECcCCCCHHH
Confidence 368899999999999994
No 265
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=42.48 E-value=24 Score=40.59 Aligned_cols=35 Identities=26% Similarity=0.232 Sum_probs=24.5
Q ss_pred CCHHHHHHHHHHHHHHHc-----------CCceeeeCCCCCcchHH
Q 002378 19 PYSIQTDFMKALYCSLEN-----------GGVSMLESPTGTGKTLS 53 (929)
Q Consensus 19 py~~Q~~~M~~v~~~~~~-----------~~~~~~esptgtgktl~ 53 (929)
-++.+..-++.+...+.+ .+..+|.+|+|||||+-
T Consensus 35 G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtL 80 (499)
T 2dhr_A 35 GAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHL 80 (499)
T ss_dssp SCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHH
T ss_pred CcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHH
Confidence 455666666666666654 23478999999999964
No 266
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=42.25 E-value=12 Score=37.29 Aligned_cols=30 Identities=27% Similarity=0.286 Sum_probs=21.6
Q ss_pred HHHHH-HHHcCCceeeeCCCCCcchHHHHHH
Q 002378 28 KALYC-SLENGGVSMLESPTGTGKTLSIICS 57 (929)
Q Consensus 28 ~~v~~-~~~~~~~~~~esptgtgktl~~l~~ 57 (929)
..+.. .+..|...++-+|+|+|||.-+.+-
T Consensus 13 d~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l 43 (235)
T 2w0m_A 13 DKLIQGGIPQGFFIALTGEPGTGKTIFSLHF 43 (235)
T ss_dssp HGGGTTSEETTCEEEEECSTTSSHHHHHHHH
T ss_pred HHHhcCCCcCCCEEEEEcCCCCCHHHHHHHH
Confidence 34443 5667899999999999999544433
No 267
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=41.91 E-value=12 Score=41.03 Aligned_cols=43 Identities=23% Similarity=0.299 Sum_probs=30.1
Q ss_pred CCCCCCCCHHHHHHHH----HHHHHHHcCCc--eeeeCCCCCcchHHHH
Q 002378 13 PAFPYKPYSIQTDFMK----ALYCSLENGGV--SMLESPTGTGKTLSII 55 (929)
Q Consensus 13 ~~FPf~py~~Q~~~M~----~v~~~~~~~~~--~~~esptgtgktl~~l 55 (929)
|+.-|.|...|.+.-+ .+++.+.+|.+ ++.-+.||||||-++.
T Consensus 76 FD~vf~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~ 124 (355)
T 3lre_A 76 FDAVFDETSTQSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTML 124 (355)
T ss_dssp CSEEECTTCCHHHHHHTTHHHHHHHHTTTCCEEEEEECCTTSSHHHHHT
T ss_pred eceEECCCCChHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCceeeec
Confidence 3334457778887765 45666677855 3458999999998863
No 268
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=41.87 E-value=9.4 Score=41.28 Aligned_cols=33 Identities=21% Similarity=0.223 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHH-HcC--CceeeeCCCCCcchHHH
Q 002378 22 IQTDFMKALYCSL-ENG--GVSMLESPTGTGKTLSI 54 (929)
Q Consensus 22 ~Q~~~M~~v~~~~-~~~--~~~~~esptgtgktl~~ 54 (929)
.|...++.+...+ ..+ .+.+|.||+|||||..+
T Consensus 18 g~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~ 53 (354)
T 1sxj_E 18 HNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRC 53 (354)
T ss_dssp SCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHH
T ss_pred CCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHH
Confidence 4677777777777 554 45899999999999643
No 269
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=41.01 E-value=10 Score=38.33 Aligned_cols=27 Identities=26% Similarity=0.276 Sum_probs=21.2
Q ss_pred HHHcCCceeeeCCCCCcchHHHHHHHH
Q 002378 33 SLENGGVSMLESPTGTGKTLSIICSAL 59 (929)
Q Consensus 33 ~~~~~~~~~~esptgtgktl~~l~~~l 59 (929)
.|..|...++-+|+|+|||.-+++-+.
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHH
Confidence 456789999999999999976555443
No 270
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=40.45 E-value=11 Score=41.53 Aligned_cols=33 Identities=18% Similarity=0.177 Sum_probs=21.0
Q ss_pred HHHHHHHHHH-HHHH-----cCCceee--eCCCCCcchHHH
Q 002378 22 IQTDFMKALY-CSLE-----NGGVSML--ESPTGTGKTLSI 54 (929)
Q Consensus 22 ~Q~~~M~~v~-~~~~-----~~~~~~~--esptgtgktl~~ 54 (929)
.+.+.+...+ ..+. .+.++++ .+|.|||||..+
T Consensus 29 ~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~ 69 (412)
T 1w5s_A 29 GEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLA 69 (412)
T ss_dssp HHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHH
T ss_pred HHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHH
Confidence 4444444444 4332 3457888 999999999643
No 271
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=40.26 E-value=23 Score=41.67 Aligned_cols=42 Identities=17% Similarity=0.188 Sum_probs=33.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHHcCCceeeeCCCCCcchHHHHHHHHHh
Q 002378 15 FPYKPYSIQTDFMKALYCSLENGGVSMLESPTGTGKTLSIICSALQW 61 (929)
Q Consensus 15 FPf~py~~Q~~~M~~v~~~~~~~~~~~~esptgtgktl~~l~~~l~~ 61 (929)
.||.++|-|..+|..+ ......+++.|-|+|||-... ..+.|
T Consensus 160 ~~~~l~p~Q~~i~~~l----~~~r~~~i~~~Rq~GKS~~~a-~~~l~ 201 (592)
T 3cpe_A 160 IKVQLRDYQRDMLKIM----SSKRMTVCNLSRQLGKTTVVA-IFLAH 201 (592)
T ss_dssp BBCCCCHHHHHHHHHH----HHCSEEEEEECSSSCHHHHHH-HHHHH
T ss_pred ccCcCCHHHHHHHHhh----ccccEEEEEEcCccChHHHHH-HHHHH
Confidence 6899999999999876 345779999999999997553 33444
No 272
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=40.19 E-value=9.2 Score=38.00 Aligned_cols=23 Identities=22% Similarity=0.367 Sum_probs=18.9
Q ss_pred HHHcCCceeeeCCCCCcchHHHH
Q 002378 33 SLENGGVSMLESPTGTGKTLSII 55 (929)
Q Consensus 33 ~~~~~~~~~~esptgtgktl~~l 55 (929)
.|..|...++-+|+|+|||.-++
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~ 38 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLAL 38 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHH
T ss_pred CCcCCEEEEEECCCCCCHHHHHH
Confidence 56678999999999999996443
No 273
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=39.59 E-value=11 Score=38.13 Aligned_cols=20 Identities=30% Similarity=0.371 Sum_probs=15.7
Q ss_pred HHHcCCceeeeCCCCCcchH
Q 002378 33 SLENGGVSMLESPTGTGKTL 52 (929)
Q Consensus 33 ~~~~~~~~~~esptgtgktl 52 (929)
.+..|+...|-+|+|+|||-
T Consensus 19 ~i~~G~~~~lvGpsGsGKST 38 (218)
T 1z6g_A 19 SMNNIYPLVICGPSGVGKGT 38 (218)
T ss_dssp ---CCCCEEEECSTTSSHHH
T ss_pred ecCCCCEEEEECCCCCCHHH
Confidence 57789999999999999983
No 274
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=39.57 E-value=17 Score=40.13 Aligned_cols=39 Identities=21% Similarity=0.271 Sum_probs=28.4
Q ss_pred CCCCCHHHHHHHHH----HHHHHHcCCc--eeeeCCCCCcchHHH
Q 002378 16 PYKPYSIQTDFMKA----LYCSLENGGV--SMLESPTGTGKTLSI 54 (929)
Q Consensus 16 Pf~py~~Q~~~M~~----v~~~~~~~~~--~~~esptgtgktl~~ 54 (929)
=|.|...|.+..+. +++.+.+|-+ ++.-+.||||||-++
T Consensus 58 Vf~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm 102 (365)
T 2y65_A 58 VFKPNASQEKVYNEAAKSIVTDVLAGYNGTIFAYGQTSSGKTHTM 102 (365)
T ss_dssp EECTTCCHHHHHHHHTHHHHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred EecCCCCHHHHHHHhhhhHHHHHhCCCceEEEeecCCCCCCceEE
Confidence 34588888877654 5566667755 345999999999876
No 275
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=39.56 E-value=15 Score=38.95 Aligned_cols=36 Identities=17% Similarity=0.210 Sum_probs=23.6
Q ss_pred CCCCCHHHHHHHHHHHHHHHc-------CCceeeeCCCCCcchH
Q 002378 16 PYKPYSIQTDFMKALYCSLEN-------GGVSMLESPTGTGKTL 52 (929)
Q Consensus 16 Pf~py~~Q~~~M~~v~~~~~~-------~~~~~~esptgtgktl 52 (929)
+|.|-.+|..+ +.++..+.. +...|+-||.|+|||-
T Consensus 6 ~~s~~~~~~~~-~~~~~~~l~~~~~~~~~~livl~G~sGsGKST 48 (287)
T 1gvn_B 6 NFTDKQFENRL-NDNLEELIQGKKAVESPTAFLLGGQPGSGKTS 48 (287)
T ss_dssp CCCHHHHHHHH-HHHHHHHHTTCCCCSSCEEEEEECCTTSCTHH
T ss_pred CCCHHHHHHHH-HHHHHHHhccccCCCCCeEEEEECCCCCCHHH
Confidence 45665555544 444555443 3568899999999983
No 276
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=39.50 E-value=9.1 Score=40.10 Aligned_cols=19 Identities=32% Similarity=0.623 Sum_probs=17.3
Q ss_pred HHcCCceeeeCCCCCcchH
Q 002378 34 LENGGVSMLESPTGTGKTL 52 (929)
Q Consensus 34 ~~~~~~~~~esptgtgktl 52 (929)
+..|+..++-+|||+|||-
T Consensus 22 i~~g~~v~i~Gp~GsGKST 40 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKST 40 (261)
T ss_dssp GCSSEEEEEECSTTCSHHH
T ss_pred hCCCCEEEEECCCCccHHH
Confidence 7788999999999999994
No 277
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=39.00 E-value=12 Score=36.33 Aligned_cols=19 Identities=21% Similarity=0.396 Sum_probs=16.3
Q ss_pred HHcCCceeeeCCCCCcchH
Q 002378 34 LENGGVSMLESPTGTGKTL 52 (929)
Q Consensus 34 ~~~~~~~~~esptgtgktl 52 (929)
+..+..++|++|.|+|||-
T Consensus 6 m~~~~~I~l~G~~GsGKsT 24 (196)
T 2c95_A 6 LKKTNIIFVVGGPGSGKGT 24 (196)
T ss_dssp HTTSCEEEEEECTTSSHHH
T ss_pred CcCCCEEEEECCCCCCHHH
Confidence 4567889999999999994
No 278
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=38.99 E-value=16 Score=39.65 Aligned_cols=39 Identities=15% Similarity=0.178 Sum_probs=28.4
Q ss_pred CCCCHHHHHHHHH----HHHHHHcCCc--eeeeCCCCCcchHHHH
Q 002378 17 YKPYSIQTDFMKA----LYCSLENGGV--SMLESPTGTGKTLSII 55 (929)
Q Consensus 17 f~py~~Q~~~M~~----v~~~~~~~~~--~~~esptgtgktl~~l 55 (929)
|.|...|.+.-+. +++.+.+|-+ ++.-+.||||||-++.
T Consensus 52 f~~~~sQ~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~ 96 (325)
T 1bg2_A 52 FQSSTSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTME 96 (325)
T ss_dssp ECTTCCHHHHHHHHTHHHHHHHHTTCCEEEEEECSTTSSHHHHHT
T ss_pred eCCCCCHHHHHHHHhhhhHHHHhCCCeEEEEEECCCCCCCceEec
Confidence 4477788876654 5666667755 4459999999998874
No 279
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=38.69 E-value=11 Score=37.30 Aligned_cols=19 Identities=21% Similarity=0.300 Sum_probs=16.3
Q ss_pred HHcCCceeeeCCCCCcchH
Q 002378 34 LENGGVSMLESPTGTGKTL 52 (929)
Q Consensus 34 ~~~~~~~~~esptgtgktl 52 (929)
+..|...+|.+|+|+|||-
T Consensus 9 ~~~~~~i~l~G~sGsGKsT 27 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGT 27 (204)
T ss_dssp CCCCCCEEEECCTTSCHHH
T ss_pred cccCCEEEEECCCCCCHHH
Confidence 4568899999999999983
No 280
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=38.61 E-value=14 Score=40.64 Aligned_cols=39 Identities=23% Similarity=0.281 Sum_probs=28.0
Q ss_pred CCCCHHHHHHHHH----HHHHHHcCCc--eeeeCCCCCcchHHHH
Q 002378 17 YKPYSIQTDFMKA----LYCSLENGGV--SMLESPTGTGKTLSII 55 (929)
Q Consensus 17 f~py~~Q~~~M~~----v~~~~~~~~~--~~~esptgtgktl~~l 55 (929)
|.|...|.+..+. +++.+.+|-+ ++.-+.||||||-+++
T Consensus 63 f~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTM~ 107 (359)
T 1x88_A 63 FGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTME 107 (359)
T ss_dssp ECTTCCHHHHHHHHHHHHHHHHHTTCEEEEEEEECTTSSHHHHHT
T ss_pred EeccCchhHHHHHHHHHhHHHHhCCCceEEEEeCCCCCCCceEEe
Confidence 4577788887665 4455667755 3458999999997764
No 281
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=38.59 E-value=12 Score=40.67 Aligned_cols=39 Identities=28% Similarity=0.362 Sum_probs=28.0
Q ss_pred CCCCHHHHHHHHH---HHHHHHcCCc--eeeeCCCCCcchHHHH
Q 002378 17 YKPYSIQTDFMKA---LYCSLENGGV--SMLESPTGTGKTLSII 55 (929)
Q Consensus 17 f~py~~Q~~~M~~---v~~~~~~~~~--~~~esptgtgktl~~l 55 (929)
|.|...|.+..+. +++.+.+|.+ ++.-+.||||||-++.
T Consensus 56 f~~~~~Q~~Vy~~v~~lv~~~l~G~n~tifAYGqTGSGKTyTm~ 99 (330)
T 2h58_A 56 FSPQASQQDVFQEVQALVTSCIDGFNVCIFAYGQTGAGKTYTME 99 (330)
T ss_dssp ECTTCCHHHHHTTTHHHHHHHHTTCCEEEEEESSTTSSHHHHHT
T ss_pred eCCCCCcHhHHHHHHHHHHHHhCCCEEEEEeECCCCCCCcEEEe
Confidence 3477788776654 5666667755 3459999999998763
No 282
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=38.39 E-value=13 Score=45.71 Aligned_cols=18 Identities=44% Similarity=0.560 Sum_probs=15.5
Q ss_pred HcCCceeeeCCCCCcchH
Q 002378 35 ENGGVSMLESPTGTGKTL 52 (929)
Q Consensus 35 ~~~~~~~~esptgtgktl 52 (929)
..+..++|.+|+|||||.
T Consensus 236 ~~~~~vLL~Gp~GtGKTt 253 (806)
T 1ypw_A 236 KPPRGILLYGPPGTGKTL 253 (806)
T ss_dssp CCCCEEEECSCTTSSHHH
T ss_pred CCCCeEEEECcCCCCHHH
Confidence 446789999999999995
No 283
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=38.34 E-value=9.8 Score=36.76 Aligned_cols=17 Identities=29% Similarity=0.235 Sum_probs=15.1
Q ss_pred cCCceeeeCCCCCcchH
Q 002378 36 NGGVSMLESPTGTGKTL 52 (929)
Q Consensus 36 ~~~~~~~esptgtgktl 52 (929)
.+.++++.+|.|+|||-
T Consensus 10 ~~~~i~i~G~~GsGKst 26 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTT 26 (180)
T ss_dssp CCCCEEEECSTTSSHHH
T ss_pred cCCeEEEEeCCCCCHHH
Confidence 56789999999999995
No 284
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=38.33 E-value=17 Score=39.79 Aligned_cols=39 Identities=15% Similarity=0.202 Sum_probs=28.3
Q ss_pred CCCCHHHHHHHHH----HHHHHHcCCc--eeeeCCCCCcchHHHH
Q 002378 17 YKPYSIQTDFMKA----LYCSLENGGV--SMLESPTGTGKTLSII 55 (929)
Q Consensus 17 f~py~~Q~~~M~~----v~~~~~~~~~--~~~esptgtgktl~~l 55 (929)
|.|-..|.+..+. +++.+.+|.+ ++.-+.||||||-+++
T Consensus 52 f~~~~tQ~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTM~ 96 (349)
T 1t5c_A 52 FHGNETTKNVYEEIAAPIIDSAIQGYNGTIFAYGQTASGKTYTMM 96 (349)
T ss_dssp ECTTSCHHHHHHHTTHHHHHHHHTTCCEEEEEEESTTSSHHHHHT
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHcCCccceeeecCCCCCCCeEEe
Confidence 3477788887764 5566667755 3458999999998763
No 285
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=37.95 E-value=8.5 Score=37.26 Aligned_cols=18 Identities=28% Similarity=0.549 Sum_probs=14.8
Q ss_pred HcCCceeeeCCCCCcchH
Q 002378 35 ENGGVSMLESPTGTGKTL 52 (929)
Q Consensus 35 ~~~~~~~~esptgtgktl 52 (929)
..|...+|++|.|+|||-
T Consensus 2 ~~g~~I~l~G~~GsGKST 19 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGT 19 (186)
T ss_dssp -CEEEEEEECCTTSCHHH
T ss_pred CCCeEEEEECCCCCCHHH
Confidence 346788999999999984
No 286
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=37.85 E-value=15 Score=40.28 Aligned_cols=38 Identities=29% Similarity=0.349 Sum_probs=27.8
Q ss_pred CCCCHHHHHHHHH----HHHHHHcCCc--eeeeCCCCCcchHHH
Q 002378 17 YKPYSIQTDFMKA----LYCSLENGGV--SMLESPTGTGKTLSI 54 (929)
Q Consensus 17 f~py~~Q~~~M~~----v~~~~~~~~~--~~~esptgtgktl~~ 54 (929)
|.|...|.+.-+. +++.+.+|-+ ++.-+.||||||-++
T Consensus 69 f~~~~sQ~~Vy~~~~~plv~~~l~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 69 FPATISQDEMYQALILPLVDKLLEGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp ECTTCCHHHHHHHHTHHHHHHHHHTCCEEEEEESSTTSSHHHHH
T ss_pred ECCCCCHHHHHHhhccchhhHhhCCCceEEEEecCCCCCCCeEE
Confidence 4477788877665 5566667755 355899999999886
No 287
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=37.57 E-value=14 Score=37.41 Aligned_cols=26 Identities=31% Similarity=0.322 Sum_probs=21.2
Q ss_pred HHHcCCceeeeCCCCCcchHHHHHHH
Q 002378 33 SLENGGVSMLESPTGTGKTLSIICSA 58 (929)
Q Consensus 33 ~~~~~~~~~~esptgtgktl~~l~~~ 58 (929)
.+..|....+-+|+|+|||.-+.+-+
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 67789999999999999997555444
No 288
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=37.51 E-value=17 Score=36.82 Aligned_cols=23 Identities=35% Similarity=0.450 Sum_probs=18.2
Q ss_pred HHHcCCceeeeCCCCCcchHHHH
Q 002378 33 SLENGGVSMLESPTGTGKTLSII 55 (929)
Q Consensus 33 ~~~~~~~~~~esptgtgktl~~l 55 (929)
.|..|...++.+|+|+|||.-.+
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l 48 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAA 48 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHH
T ss_pred CCCCCeEEEEEeCCCCCHHHHHH
Confidence 35567899999999999995433
No 289
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=37.50 E-value=8.3 Score=39.14 Aligned_cols=19 Identities=42% Similarity=0.604 Sum_probs=12.2
Q ss_pred HHcCCceeeeCCCCCcchH
Q 002378 34 LENGGVSMLESPTGTGKTL 52 (929)
Q Consensus 34 ~~~~~~~~~esptgtgktl 52 (929)
+..|+...|-+|+|+|||-
T Consensus 24 v~~G~ii~l~Gp~GsGKST 42 (231)
T 3lnc_A 24 KSVGVILVLSSPSGCGKTT 42 (231)
T ss_dssp EECCCEEEEECSCC----C
T ss_pred cCCCCEEEEECCCCCCHHH
Confidence 4567889999999999983
No 290
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=37.50 E-value=9.2 Score=37.59 Aligned_cols=17 Identities=29% Similarity=0.474 Sum_probs=14.9
Q ss_pred cCCceeeeCCCCCcchH
Q 002378 36 NGGVSMLESPTGTGKTL 52 (929)
Q Consensus 36 ~~~~~~~esptgtgktl 52 (929)
.|..++|++|.|+|||-
T Consensus 3 ~~~~I~l~G~~GsGKsT 19 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTT 19 (204)
T ss_dssp CCCEEEEECCTTSSHHH
T ss_pred CCcEEEEEcCCCCCHHH
Confidence 47789999999999983
No 291
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=37.45 E-value=16 Score=40.10 Aligned_cols=39 Identities=21% Similarity=0.301 Sum_probs=27.8
Q ss_pred CCCCHHHHHHHH----HHHHHHHcCCc--eeeeCCCCCcchHHHH
Q 002378 17 YKPYSIQTDFMK----ALYCSLENGGV--SMLESPTGTGKTLSII 55 (929)
Q Consensus 17 f~py~~Q~~~M~----~v~~~~~~~~~--~~~esptgtgktl~~l 55 (929)
|.|...|.+.-+ .+++.+.+|.+ ++.-+.||||||-+++
T Consensus 55 f~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~ 99 (355)
T 1goj_A 55 FDMSCKQSDIFDFSIKPTVDDILNGYNGTVFAYGQTGAGKSYTMM 99 (355)
T ss_dssp ECTTCCHHHHHHHHTHHHHHHHTTTCCEEEEEECSTTSSHHHHHT
T ss_pred ECCCCccHHHHHHHHHHHHHHHhCCCcceEEEECCCCCCcceEee
Confidence 347777877665 45666667755 4458999999998764
No 292
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=37.30 E-value=11 Score=37.27 Aligned_cols=17 Identities=29% Similarity=0.540 Sum_probs=13.6
Q ss_pred cCCceeeeCCCCCcchH
Q 002378 36 NGGVSMLESPTGTGKTL 52 (929)
Q Consensus 36 ~~~~~~~esptgtgktl 52 (929)
.|+..+|-+|+|+|||-
T Consensus 3 ~g~~i~lvGpsGaGKST 19 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKST 19 (198)
T ss_dssp --CCEEEECCTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 57888999999999983
No 293
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=36.88 E-value=15 Score=40.89 Aligned_cols=39 Identities=31% Similarity=0.454 Sum_probs=28.6
Q ss_pred CCCCHHHHHHHHH----HHHHHHcCCc--eeeeCCCCCcchHHHH
Q 002378 17 YKPYSIQTDFMKA----LYCSLENGGV--SMLESPTGTGKTLSII 55 (929)
Q Consensus 17 f~py~~Q~~~M~~----v~~~~~~~~~--~~~esptgtgktl~~l 55 (929)
|.|...|.+..+. +++.+.+|-+ ++.-+.||||||-+++
T Consensus 73 f~~~~tQ~~Vy~~~~~plv~~~l~G~N~tifAYGqTGSGKTyTM~ 117 (388)
T 3bfn_A 73 YGERSTQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTML 117 (388)
T ss_dssp ECTTCCHHHHHHHHTGGGHHHHTTTCCEEEEEESCTTSSHHHHHT
T ss_pred ecCCCCHhHHHHHHHHHHHHHhhcCceeeEeeecCCCCCCCeEee
Confidence 3477788887765 5566677755 3458999999998873
No 294
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=36.84 E-value=16 Score=42.53 Aligned_cols=18 Identities=39% Similarity=0.576 Sum_probs=15.5
Q ss_pred CCceeeeCCCCCcchHHH
Q 002378 37 GGVSMLESPTGTGKTLSI 54 (929)
Q Consensus 37 ~~~~~~esptgtgktl~~ 54 (929)
|.+.+|-+|+|||||...
T Consensus 108 g~~vll~Gp~GtGKTtla 125 (543)
T 3m6a_A 108 GPILCLAGPPGVGKTSLA 125 (543)
T ss_dssp SCEEEEESSSSSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 678999999999999543
No 295
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=36.79 E-value=15 Score=40.39 Aligned_cols=37 Identities=22% Similarity=0.292 Sum_probs=26.9
Q ss_pred CCCHHHHHHHH----HHHHHHHcCCce--eeeCCCCCcchHHH
Q 002378 18 KPYSIQTDFMK----ALYCSLENGGVS--MLESPTGTGKTLSI 54 (929)
Q Consensus 18 ~py~~Q~~~M~----~v~~~~~~~~~~--~~esptgtgktl~~ 54 (929)
++|..|.++-+ .+++.+.+|.++ +.-+.||||||-++
T Consensus 68 ~~~a~Q~~vy~~~~~~lv~~~l~G~n~tifAYGqTGSGKTyTm 110 (354)
T 3gbj_A 68 EKYAGQDIVFKCLGENILQNAFDGYNACIFAYGQTGSGKSYTM 110 (354)
T ss_dssp TTBCCHHHHHHHHHHHHHHHHHTTCCEEEEEEECTTSSHHHHH
T ss_pred cccccHHHHHHHhhHHHHHHHhCCceeEEEeeCCCCCCCceEE
Confidence 45667887654 456666678654 45899999999887
No 296
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=36.19 E-value=20 Score=42.27 Aligned_cols=36 Identities=14% Similarity=0.111 Sum_probs=26.1
Q ss_pred CCHHHHHHHHHHHHHHHcCCceeeeCCCCCcchHHHHHHHHH
Q 002378 19 PYSIQTDFMKALYCSLENGGVSMLESPTGTGKTLSIICSALQ 60 (929)
Q Consensus 19 py~~Q~~~M~~v~~~~~~~~~~~~esptgtgktl~~l~~~l~ 60 (929)
.-+.|.+... ......++.+|.|||||-.++.-+..
T Consensus 10 Ln~~Q~~av~------~~~~~~lV~a~aGsGKT~~l~~ri~~ 45 (647)
T 3lfu_A 10 LNDKQREAVA------APRSNLLVLAGAGSGKTRVLVHRIAW 45 (647)
T ss_dssp CCHHHHHHHT------CCSSCEEEEECTTSCHHHHHHHHHHH
T ss_pred CCHHHHHHHh------CCCCCEEEEECCCCCHHHHHHHHHHH
Confidence 4567877754 23577889999999999887655443
No 297
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=36.07 E-value=29 Score=38.45 Aligned_cols=40 Identities=15% Similarity=0.146 Sum_probs=32.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHcCCceeeeCCCCCcchHHHHHHH
Q 002378 15 FPYKPYSIQTDFMKALYCSLENGGVSMLESPTGTGKTLSIICSA 58 (929)
Q Consensus 15 FPf~py~~Q~~~M~~v~~~~~~~~~~~~esptgtgktl~~l~~~ 58 (929)
.||.++|-|..+|..+. ....++++.|-+.|||-....-+
T Consensus 160 ~p~~L~p~Qk~il~~l~----~~R~~vi~~sRq~GKT~l~a~~~ 199 (385)
T 2o0j_A 160 IKVQLRDYQRDMLKIMS----SKRMTVCNLSRQLGKTTVVAIFL 199 (385)
T ss_dssp EECCCCHHHHHHHHHHH----HSSEEEEEECSSSCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHhhc----cCcEEEEEEcCcCChhHHHHHHH
Confidence 68999999999998663 34679999999999997544433
No 298
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=35.74 E-value=11 Score=40.70 Aligned_cols=15 Identities=40% Similarity=0.543 Sum_probs=12.8
Q ss_pred CceeeeCCCCCcchH
Q 002378 38 GVSMLESPTGTGKTL 52 (929)
Q Consensus 38 ~~~~~esptgtgktl 52 (929)
...++-+|||+|||-
T Consensus 11 ~~i~i~GptgsGKt~ 25 (316)
T 3foz_A 11 KAIFLMGPTASGKTA 25 (316)
T ss_dssp EEEEEECCTTSCHHH
T ss_pred cEEEEECCCccCHHH
Confidence 467889999999993
No 299
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=35.57 E-value=21 Score=39.15 Aligned_cols=30 Identities=27% Similarity=0.542 Sum_probs=20.3
Q ss_pred HHHcCCceeeeCCCCCcchHHHHHHHHHhHH
Q 002378 33 SLENGGVSMLESPTGTGKTLSIICSALQWVV 63 (929)
Q Consensus 33 ~~~~~~~~~~esptgtgktl~~l~~~l~~~~ 63 (929)
....+...++-+|||+|||-.+ -+.+.++.
T Consensus 119 ~~~~~g~i~I~GptGSGKTTlL-~~l~g~~~ 148 (356)
T 3jvv_A 119 SDVPRGLVLVTGPTGSGKSTTL-AAMLDYLN 148 (356)
T ss_dssp HHCSSEEEEEECSTTSCHHHHH-HHHHHHHH
T ss_pred HhCCCCEEEEECCCCCCHHHHH-HHHHhccc
Confidence 4456678899999999999433 33344443
No 300
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=35.24 E-value=12 Score=38.33 Aligned_cols=19 Identities=32% Similarity=0.490 Sum_probs=13.0
Q ss_pred HHcCCceeeeCCCCCcchH
Q 002378 34 LENGGVSMLESPTGTGKTL 52 (929)
Q Consensus 34 ~~~~~~~~~esptgtgktl 52 (929)
+..|..++||+|.|+|||-
T Consensus 22 m~~g~~I~~eG~~GsGKsT 40 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTT 40 (227)
T ss_dssp -CCCCEEEEECCC---CHH
T ss_pred ccCCeEEEEECCCCCCHHH
Confidence 3568899999999999983
No 301
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=34.37 E-value=14 Score=34.99 Aligned_cols=14 Identities=29% Similarity=0.330 Sum_probs=12.4
Q ss_pred ceeeeCCCCCcchH
Q 002378 39 VSMLESPTGTGKTL 52 (929)
Q Consensus 39 ~~~~esptgtgktl 52 (929)
.+++.||.|+|||-
T Consensus 3 ~i~l~G~~GsGKsT 16 (173)
T 3kb2_A 3 LIILEGPDCCFKST 16 (173)
T ss_dssp EEEEECSSSSSHHH
T ss_pred EEEEECCCCCCHHH
Confidence 57899999999984
No 302
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=34.36 E-value=22 Score=39.43 Aligned_cols=40 Identities=20% Similarity=0.254 Sum_probs=28.6
Q ss_pred CCCCHHHHHHHHH----HHHHHHcCCc--eeeeCCCCCcchHHHHH
Q 002378 17 YKPYSIQTDFMKA----LYCSLENGGV--SMLESPTGTGKTLSIIC 56 (929)
Q Consensus 17 f~py~~Q~~~M~~----v~~~~~~~~~--~~~esptgtgktl~~l~ 56 (929)
|.|-..|.+.-+. +++.+.+|.+ ++.-+.||||||-++.-
T Consensus 109 F~~~~sQ~~Vy~~~~~plv~~~l~G~N~tifAYGQTGSGKTyTM~G 154 (387)
T 2heh_A 109 FDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGG 154 (387)
T ss_dssp ECTTCCHHHHHHHTTHHHHHHHHTTCEEEEEEESCTTSSHHHHHC-
T ss_pred EecCCCceeehhhhHHHHHHHHhcCCceEEEEecCCCCCCCeEecc
Confidence 4577788877654 5667777755 44589999999988643
No 303
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=33.97 E-value=15 Score=36.53 Aligned_cols=21 Identities=19% Similarity=0.196 Sum_probs=17.7
Q ss_pred HHHHcCCceeeeCCCCCcchH
Q 002378 32 CSLENGGVSMLESPTGTGKTL 52 (929)
Q Consensus 32 ~~~~~~~~~~~esptgtgktl 52 (929)
..+..|...++++|.|+|||-
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT 40 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKST 40 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHH
T ss_pred ccCCCCCEEEEECCCCCCHHH
Confidence 346778899999999999973
No 304
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=33.83 E-value=19 Score=40.36 Aligned_cols=40 Identities=20% Similarity=0.295 Sum_probs=28.9
Q ss_pred CCCCCHHHHHHHH----HHHHHHHcCCc--eeeeCCCCCcchHHHH
Q 002378 16 PYKPYSIQTDFMK----ALYCSLENGGV--SMLESPTGTGKTLSII 55 (929)
Q Consensus 16 Pf~py~~Q~~~M~----~v~~~~~~~~~--~~~esptgtgktl~~l 55 (929)
=|.|...|.+.-+ .+++.+.+|.+ ++.-+.||||||-++.
T Consensus 128 VF~~~~tQ~~Vy~~~~~plV~~~l~G~N~tifAYGQTGSGKTyTM~ 173 (410)
T 1v8k_A 128 AFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMG 173 (410)
T ss_dssp EECTTCCHHHHHHHTTHHHHHHHHTTCEEEEEEEESTTSSHHHHHH
T ss_pred EEecCCChhhhhHHHHHHHHHHHhcCCceeEEeecCCCCCCCeEee
Confidence 3457778887765 45666777755 4458999999998864
No 305
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=33.65 E-value=22 Score=39.00 Aligned_cols=37 Identities=24% Similarity=0.241 Sum_probs=27.3
Q ss_pred CCCHHHHHHHHH----HHHHHHcCCc--eeeeCCCCCcchHHH
Q 002378 18 KPYSIQTDFMKA----LYCSLENGGV--SMLESPTGTGKTLSI 54 (929)
Q Consensus 18 ~py~~Q~~~M~~----v~~~~~~~~~--~~~esptgtgktl~~ 54 (929)
.|...|.+.-+. +++.+.+|-+ ++.-+.||||||-++
T Consensus 65 ~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 65 DQTSCNYGIFQASFKPLIDAVLEGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp CTTCCHHHHHHHTTHHHHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred CCCcchhHHHHHHHHHHHHHHhCCCceeEEeecCCCCCCCEEe
Confidence 477788877654 5666677755 345899999999876
No 306
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=33.31 E-value=19 Score=37.80 Aligned_cols=16 Identities=44% Similarity=0.655 Sum_probs=13.2
Q ss_pred CceeeeCCCCCcchHH
Q 002378 38 GVSMLESPTGTGKTLS 53 (929)
Q Consensus 38 ~~~~~esptgtgktl~ 53 (929)
+..+|.+|.|||||+-
T Consensus 45 ~GvlL~Gp~GtGKTtL 60 (274)
T 2x8a_A 45 AGVLLAGPPGCGKTLL 60 (274)
T ss_dssp SEEEEESSTTSCHHHH
T ss_pred CeEEEECCCCCcHHHH
Confidence 3388999999999963
No 307
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=33.26 E-value=12 Score=36.81 Aligned_cols=17 Identities=29% Similarity=0.474 Sum_probs=14.7
Q ss_pred cCCceeeeCCCCCcchH
Q 002378 36 NGGVSMLESPTGTGKTL 52 (929)
Q Consensus 36 ~~~~~~~esptgtgktl 52 (929)
.+..++|++|.|+|||-
T Consensus 3 ~~~~I~i~G~~GsGKsT 19 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSS 19 (213)
T ss_dssp CCEEEEEECCTTSSHHH
T ss_pred CCeEEEEEcCCCCCHHH
Confidence 46788999999999983
No 308
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=33.15 E-value=20 Score=39.63 Aligned_cols=38 Identities=26% Similarity=0.183 Sum_probs=27.2
Q ss_pred CCCHHHHHHHHH----HHHHHHcCCc--eeeeCCCCCcchHHHH
Q 002378 18 KPYSIQTDFMKA----LYCSLENGGV--SMLESPTGTGKTLSII 55 (929)
Q Consensus 18 ~py~~Q~~~M~~----v~~~~~~~~~--~~~esptgtgktl~~l 55 (929)
.|...|.+..+. +++.+.+|-+ ++.-+.||||||-++.
T Consensus 77 ~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTM~ 120 (372)
T 3b6u_A 77 DWNAKQFELYDETFRPLVDSVLQGFNGTIFAYGQTGTGKTYTME 120 (372)
T ss_dssp CTTCCHHHHHHHTHHHHHHHHHTTCCEEEEEEESTTSSHHHHHT
T ss_pred CCcCchHHHHHHHHHHHHHHHhCCCeeeEEeecCCCCCCCEeEe
Confidence 477788877654 5566667755 3458999999998763
No 309
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=33.04 E-value=15 Score=35.08 Aligned_cols=15 Identities=20% Similarity=0.395 Sum_probs=13.7
Q ss_pred CCceeeeCCCCCcch
Q 002378 37 GGVSMLESPTGTGKT 51 (929)
Q Consensus 37 ~~~~~~esptgtgkt 51 (929)
+..+++.+|.|+|||
T Consensus 3 ~~~i~l~G~~GsGKS 17 (178)
T 1qhx_A 3 TRMIILNGGSSAGKS 17 (178)
T ss_dssp CCEEEEECCTTSSHH
T ss_pred ceEEEEECCCCCCHH
Confidence 567899999999998
No 310
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=33.03 E-value=9.1 Score=37.26 Aligned_cols=20 Identities=25% Similarity=0.444 Sum_probs=16.8
Q ss_pred HHHcCCceeeeCCCCCcchH
Q 002378 33 SLENGGVSMLESPTGTGKTL 52 (929)
Q Consensus 33 ~~~~~~~~~~esptgtgktl 52 (929)
.+..|+..++-+|.|+|||-
T Consensus 5 ~i~~g~~i~l~G~~GsGKST 24 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKST 24 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHH
T ss_pred CCCCCeEEEEECCCCCCHHH
Confidence 36678899999999999984
No 311
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=33.00 E-value=13 Score=37.39 Aligned_cols=18 Identities=17% Similarity=0.174 Sum_probs=14.3
Q ss_pred HcCCceeeeCCCCCcchH
Q 002378 35 ENGGVSMLESPTGTGKTL 52 (929)
Q Consensus 35 ~~~~~~~~esptgtgktl 52 (929)
..+..++|+||.|+|||-
T Consensus 5 ~~~~~I~l~G~~GsGKsT 22 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGT 22 (227)
T ss_dssp --CCEEEEEECTTSSHHH
T ss_pred ccCcEEEEECCCCCCHHH
Confidence 445789999999999984
No 312
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=32.95 E-value=18 Score=38.83 Aligned_cols=34 Identities=12% Similarity=0.140 Sum_probs=24.8
Q ss_pred HHHHHHHHcCCceeeeCCCCCcchHHHHHHHHHh
Q 002378 28 KALYCSLENGGVSMLESPTGTGKTLSIICSALQW 61 (929)
Q Consensus 28 ~~v~~~~~~~~~~~~esptgtgktl~~l~~~l~~ 61 (929)
..+...|..|...++.+|+|+|||.-.+.-+...
T Consensus 59 D~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~ 92 (315)
T 3bh0_A 59 DRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNM 92 (315)
T ss_dssp HHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 3444567788999999999999996555544443
No 313
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=32.58 E-value=16 Score=37.10 Aligned_cols=20 Identities=25% Similarity=0.664 Sum_probs=15.8
Q ss_pred HHHcCCceeeeCCCCCcchH
Q 002378 33 SLENGGVSMLESPTGTGKTL 52 (929)
Q Consensus 33 ~~~~~~~~~~esptgtgktl 52 (929)
.+..|...++-+|.|+|||-
T Consensus 12 ~~~~G~ii~l~GpsGsGKST 31 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSS 31 (219)
T ss_dssp ---CCCEEEEECCTTSCHHH
T ss_pred cCCCCcEEEEECCCCCCHHH
Confidence 46789999999999999994
No 314
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=32.56 E-value=14 Score=37.34 Aligned_cols=17 Identities=29% Similarity=0.411 Sum_probs=15.2
Q ss_pred cCCceeeeCCCCCcchH
Q 002378 36 NGGVSMLESPTGTGKTL 52 (929)
Q Consensus 36 ~~~~~~~esptgtgktl 52 (929)
.|..++||+|.|+|||-
T Consensus 2 ~g~~i~~eG~~gsGKsT 18 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTT 18 (213)
T ss_dssp CCCEEEEEECTTSCHHH
T ss_pred CCeEEEEECCCCCCHHH
Confidence 47899999999999983
No 315
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=32.55 E-value=21 Score=39.48 Aligned_cols=38 Identities=34% Similarity=0.358 Sum_probs=26.4
Q ss_pred CCCHHHHHHHHH----HHHHHHcCCc--eeeeCCCCCcchHHHH
Q 002378 18 KPYSIQTDFMKA----LYCSLENGGV--SMLESPTGTGKTLSII 55 (929)
Q Consensus 18 ~py~~Q~~~M~~----v~~~~~~~~~--~~~esptgtgktl~~l 55 (929)
.|-..|.+..+. +++.+.+|-+ ++.-+.||||||-+++
T Consensus 76 ~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~ 119 (373)
T 2wbe_C 76 GPESKQCDVYSVVVSPLIEEVLNGYNCTVFAYGQTGTGKTHTMV 119 (373)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHT
T ss_pred ccccchhHHHHHHHHHHHHHHhCCceEEEEeecCCCCCcceecc
Confidence 476778777655 4555556754 4458999999997753
No 316
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=32.38 E-value=16 Score=39.18 Aligned_cols=27 Identities=19% Similarity=0.290 Sum_probs=21.4
Q ss_pred HHHHHHHHHHcCCceeeeCCCCCcchH
Q 002378 26 FMKALYCSLENGGVSMLESPTGTGKTL 52 (929)
Q Consensus 26 ~M~~v~~~~~~~~~~~~esptgtgktl 52 (929)
..+.+--.+..|+...+-+|+|+|||-
T Consensus 115 vL~~vsl~i~~Ge~vaIvGpsGsGKST 141 (305)
T 2v9p_A 115 ALKLWLKGIPKKNCLAFIGPPNTGKSM 141 (305)
T ss_dssp HHHHHHHTCTTCSEEEEECSSSSSHHH
T ss_pred hhccceEEecCCCEEEEECCCCCcHHH
Confidence 345555567789999999999999983
No 317
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=32.29 E-value=14 Score=35.82 Aligned_cols=16 Identities=25% Similarity=0.221 Sum_probs=13.8
Q ss_pred CCceeeeCCCCCcchH
Q 002378 37 GGVSMLESPTGTGKTL 52 (929)
Q Consensus 37 ~~~~~~esptgtgktl 52 (929)
+..++|++|.|+|||-
T Consensus 3 ~~~I~l~G~~GsGKsT 18 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGT 18 (196)
T ss_dssp CEEEEEECCTTSSHHH
T ss_pred ceEEEEECCCCCCHHH
Confidence 5678999999999984
No 318
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=32.11 E-value=17 Score=35.44 Aligned_cols=16 Identities=31% Similarity=0.605 Sum_probs=13.4
Q ss_pred CCceeeeCCCCCcchH
Q 002378 37 GGVSMLESPTGTGKTL 52 (929)
Q Consensus 37 ~~~~~~esptgtgktl 52 (929)
+...+|-+|+|+|||-
T Consensus 1 ~~ii~l~GpsGaGKsT 16 (186)
T 3a00_A 1 SRPIVISGPSGTGKST 16 (186)
T ss_dssp CCCEEEESSSSSSHHH
T ss_pred CCEEEEECCCCCCHHH
Confidence 4567889999999993
No 319
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=31.84 E-value=14 Score=37.27 Aligned_cols=18 Identities=39% Similarity=0.591 Sum_probs=15.2
Q ss_pred HcCCceeeeCCCCCcchH
Q 002378 35 ENGGVSMLESPTGTGKTL 52 (929)
Q Consensus 35 ~~~~~~~~esptgtgktl 52 (929)
+.|..++||+|.|+|||-
T Consensus 4 m~g~~i~~eG~~gsGKsT 21 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKST 21 (213)
T ss_dssp -CCEEEEEECSTTSSHHH
T ss_pred CCceEEEEEcCCCCCHHH
Confidence 457889999999999983
No 320
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=31.63 E-value=20 Score=39.32 Aligned_cols=22 Identities=32% Similarity=0.816 Sum_probs=16.3
Q ss_pred ceeeeCCCCCcchHHHHHHHHHhH
Q 002378 39 VSMLESPTGTGKTLSIICSALQWV 62 (929)
Q Consensus 39 ~~~~esptgtgktl~~l~~~l~~~ 62 (929)
..++-+|||+||| ++| -+++|+
T Consensus 25 ~~~i~G~NGaGKT-Tll-~ai~~a 46 (365)
T 3qf7_A 25 ITVVEGPNGAGKS-SLF-EAISFA 46 (365)
T ss_dssp EEEEECCTTSSHH-HHH-HHHHHH
T ss_pred eEEEECCCCCCHH-HHH-HHHHHH
Confidence 5678999999999 444 455554
No 321
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=31.63 E-value=18 Score=39.86 Aligned_cols=38 Identities=29% Similarity=0.375 Sum_probs=27.8
Q ss_pred CCCCHHHHHHHHH---HHHHHHcCCce--eeeCCCCCcchHHH
Q 002378 17 YKPYSIQTDFMKA---LYCSLENGGVS--MLESPTGTGKTLSI 54 (929)
Q Consensus 17 f~py~~Q~~~M~~---v~~~~~~~~~~--~~esptgtgktl~~ 54 (929)
|.|...|.+.-+. +++.+.+|.++ +.-+.||||||-++
T Consensus 55 f~~~~~Q~~Vy~~~~~lv~~~l~G~n~tifAYGqTGSGKTyTM 97 (369)
T 3cob_A 55 FDGNATQDDVFEDTKYLVQSAVDGYNVCIFAYGQTGSGKTFTI 97 (369)
T ss_dssp ECTTCCHHHHHHTTTHHHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred ECCCCCcceehhhhhhhhHhhhcCCceEEEEECCCCCCCeEee
Confidence 4477788877654 56666678653 44899999999886
No 322
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=31.61 E-value=2e+02 Score=35.37 Aligned_cols=82 Identities=12% Similarity=0.050 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHhhccCCCeEEEccCHHHHHHHHHHHHhcChhHHhhcCccEEEcCCCCchHHHHHHHHHHHHhccCCCCC
Q 002378 670 IEELGLLLCNLVSVVPEGIIVFFPSFEYVERVYGAWKSLGILDRIMKKKHVFREPRGNTHVESVLKEYQKTIDTLSSRPK 749 (929)
Q Consensus 670 ~~~l~~~i~~~~~~vpgg~LVfFpSy~~l~~~~~~w~~~~~~~~l~~~K~if~E~~~~~~~~~~l~~y~~~i~~~~~~~~ 749 (929)
...|...|.... ..+..+|||+.|-.-.+.+...++..|+- ....-.+ ....+..+- ...+
T Consensus 446 ~~al~~~i~~~~-~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~-------~~vLnak-~~~rEa~ii-----a~ag----- 506 (922)
T 1nkt_A 446 YIAVVDDVAERY-AKGQPVLIGTTSVERSEYLSRQFTKRRIP-------HNVLNAK-YHEQEATII-----AVAG----- 506 (922)
T ss_dssp HHHHHHHHHHHH-HTTCCEEEEESCHHHHHHHHHHHHHTTCC-------CEEECSS-CHHHHHHHH-----HTTT-----
T ss_pred HHHHHHHHHHHH-hcCCcEEEEECCHHHHHHHHHHHHHCCCC-------EEEecCC-hhHHHHHHH-----HhcC-----
Confidence 344444444332 12345999999999999999999887641 1222222 112222111 1111
Q ss_pred CCCCCCCCcEEEEEecCccccccccCCC
Q 002378 750 EDSTPLNGAMLLAVVGGKISEGINFSDG 777 (929)
Q Consensus 750 ~~~~~~~gaiL~aV~rGk~sEGIDf~d~ 777 (929)
..|+|++|. .-...|+|++..
T Consensus 507 -----r~G~VtIAT--nmAgRGtDI~l~ 527 (922)
T 1nkt_A 507 -----RRGGVTVAT--NMAGRGTDIVLG 527 (922)
T ss_dssp -----STTCEEEEE--TTCSTTCCCCTT
T ss_pred -----CCCeEEEec--chhhcCccccCC
Confidence 468999999 888999999974
No 323
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=31.41 E-value=10 Score=36.55 Aligned_cols=21 Identities=19% Similarity=0.314 Sum_probs=17.0
Q ss_pred HHcCCceeeeCCCCCcchHHH
Q 002378 34 LENGGVSMLESPTGTGKTLSI 54 (929)
Q Consensus 34 ~~~~~~~~~esptgtgktl~~ 54 (929)
+..|+...+-+|.|+|||--+
T Consensus 6 i~~gei~~l~G~nGsGKSTl~ 26 (171)
T 4gp7_A 6 IPELSLVVLIGSSGSGKSTFA 26 (171)
T ss_dssp EESSEEEEEECCTTSCHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHH
Confidence 356888999999999998543
No 324
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=31.33 E-value=14 Score=40.78 Aligned_cols=19 Identities=32% Similarity=0.623 Sum_probs=16.7
Q ss_pred HHcCCceeeeCCCCCcchH
Q 002378 34 LENGGVSMLESPTGTGKTL 52 (929)
Q Consensus 34 ~~~~~~~~~esptgtgktl 52 (929)
+..|+..++-+|||+|||-
T Consensus 133 ~~~g~~i~ivG~~GsGKTT 151 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKST 151 (372)
T ss_dssp TSSSEEEEEECSSSSSHHH
T ss_pred hcCCCEEEEECCCCCCHHH
Confidence 5678889999999999994
No 325
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=31.15 E-value=14 Score=38.34 Aligned_cols=14 Identities=36% Similarity=0.544 Sum_probs=12.2
Q ss_pred ceeeeCCCCCcchH
Q 002378 39 VSMLESPTGTGKTL 52 (929)
Q Consensus 39 ~~~~esptgtgktl 52 (929)
..++-+|||||||-
T Consensus 3 li~I~G~~GSGKST 16 (253)
T 2ze6_A 3 LHLIYGPTCSGKTD 16 (253)
T ss_dssp EEEEECCTTSSHHH
T ss_pred EEEEECCCCcCHHH
Confidence 57889999999983
No 326
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=31.12 E-value=18 Score=44.24 Aligned_cols=24 Identities=29% Similarity=0.439 Sum_probs=18.5
Q ss_pred cCCceeeeCCCCCcchHHHHHHHHHh
Q 002378 36 NGGVSMLESPTGTGKTLSIICSALQW 61 (929)
Q Consensus 36 ~~~~~~~esptgtgktl~~l~~~l~~ 61 (929)
.+...+|.+|+|||||+ |+-+|+.
T Consensus 510 ~~~~vLL~GppGtGKT~--Lakala~ 533 (806)
T 1ypw_A 510 PSKGVLFYGPPGCGKTL--LAKAIAN 533 (806)
T ss_dssp CCCCCCCBCCTTSSHHH--HHHHHHH
T ss_pred CCceeEEECCCCCCHHH--HHHHHHH
Confidence 46789999999999997 4445544
No 327
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=30.79 E-value=19 Score=39.94 Aligned_cols=26 Identities=19% Similarity=0.401 Sum_probs=19.6
Q ss_pred HHHHHHHHHcCCceeeeCCCCCcchH
Q 002378 27 MKALYCSLENGGVSMLESPTGTGKTL 52 (929)
Q Consensus 27 M~~v~~~~~~~~~~~~esptgtgktl 52 (929)
.+.+--.+..|...++.+|.|+|||.
T Consensus 159 l~~~~~~i~~~~~i~l~G~~GsGKST 184 (377)
T 1svm_A 159 LKCMVYNIPKKRYWLFKGPIDSGKTT 184 (377)
T ss_dssp HHHHHHCCTTCCEEEEECSTTSSHHH
T ss_pred HHhcccccCCCCEEEEECCCCCCHHH
Confidence 33334456678899999999999984
No 328
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=30.77 E-value=17 Score=35.52 Aligned_cols=14 Identities=21% Similarity=0.297 Sum_probs=12.2
Q ss_pred ceeeeCCCCCcchH
Q 002378 39 VSMLESPTGTGKTL 52 (929)
Q Consensus 39 ~~~~esptgtgktl 52 (929)
.++|++|.|+|||-
T Consensus 2 ~I~i~G~~GsGKsT 15 (205)
T 2jaq_A 2 KIAIFGTVGAGKST 15 (205)
T ss_dssp EEEEECCTTSCHHH
T ss_pred EEEEECCCccCHHH
Confidence 57899999999993
No 329
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=30.71 E-value=20 Score=40.14 Aligned_cols=18 Identities=28% Similarity=0.462 Sum_probs=15.9
Q ss_pred CCceeeeCCCCCcchHHH
Q 002378 37 GGVSMLESPTGTGKTLSI 54 (929)
Q Consensus 37 ~~~~~~esptgtgktl~~ 54 (929)
..+.++-+|||+|||-.+
T Consensus 53 ~~h~~i~G~tGsGKs~~~ 70 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLL 70 (437)
T ss_dssp GGCEEEEECTTSSHHHHH
T ss_pred cceEEEECCCCCCHHHHH
Confidence 478999999999999874
No 330
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=30.64 E-value=32 Score=40.96 Aligned_cols=40 Identities=18% Similarity=0.136 Sum_probs=29.9
Q ss_pred CCHHHHHHHHHHHHHHHcCCceeeeCCCCCcchHHHHHHHHHhHHH
Q 002378 19 PYSIQTDFMKALYCSLENGGVSMLESPTGTGKTLSIICSALQWVVD 64 (929)
Q Consensus 19 py~~Q~~~M~~v~~~~~~~~~~~~esptgtgktl~~l~~~l~~~~~ 64 (929)
.-|.|++.... .++..++.++-|||||-.++.-+...+..
T Consensus 3 L~~~Q~~av~~------~~~~~lV~AgaGSGKT~~l~~ri~~ll~~ 42 (673)
T 1uaa_A 3 LNPGQQQAVEF------VTGPCLVLAGAGSGKTRVITNKIAHLIRG 42 (673)
T ss_dssp CCHHHHHHHHC------CSSEEEECCCTTSCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhC------CCCCEEEEeCCCCChHHHHHHHHHHHHHh
Confidence 45678777542 36788899999999999887776655553
No 331
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=30.63 E-value=15 Score=39.86 Aligned_cols=15 Identities=40% Similarity=0.450 Sum_probs=13.0
Q ss_pred CceeeeCCCCCcchH
Q 002378 38 GVSMLESPTGTGKTL 52 (929)
Q Consensus 38 ~~~~~esptgtgktl 52 (929)
+..++-+|||+|||-
T Consensus 6 ~~i~i~GptGsGKTt 20 (323)
T 3crm_A 6 PAIFLMGPTAAGKTD 20 (323)
T ss_dssp EEEEEECCTTSCHHH
T ss_pred cEEEEECCCCCCHHH
Confidence 468899999999994
No 332
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=30.59 E-value=25 Score=34.66 Aligned_cols=28 Identities=21% Similarity=0.158 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHc-----CCceeeeCCCCCcchH
Q 002378 25 DFMKALYCSLEN-----GGVSMLESPTGTGKTL 52 (929)
Q Consensus 25 ~~M~~v~~~~~~-----~~~~~~esptgtgktl 52 (929)
+.|..+.+.+.. +....+.+|.|+|||-
T Consensus 5 ~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKst 37 (201)
T 1rz3_A 5 DRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTT 37 (201)
T ss_dssp HHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHH
T ss_pred HHHHHHHHHHHHhccCCCeEEEEECCCCCCHHH
Confidence 456777777764 4667889999999984
No 333
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=30.52 E-value=19 Score=34.25 Aligned_cols=16 Identities=31% Similarity=0.464 Sum_probs=14.1
Q ss_pred CCceeeeCCCCCcchH
Q 002378 37 GGVSMLESPTGTGKTL 52 (929)
Q Consensus 37 ~~~~~~esptgtgktl 52 (929)
+...+|-+|.|+|||-
T Consensus 4 ~~~i~l~G~~GsGKST 19 (173)
T 1kag_A 4 KRNIFLVGPMGAGKST 19 (173)
T ss_dssp CCCEEEECCTTSCHHH
T ss_pred CCeEEEECCCCCCHHH
Confidence 5788999999999983
No 334
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=30.46 E-value=26 Score=40.41 Aligned_cols=28 Identities=14% Similarity=0.249 Sum_probs=21.9
Q ss_pred HcCCceeeeCCCCCcchHHHHHHHHHhH
Q 002378 35 ENGGVSMLESPTGTGKTLSIICSALQWV 62 (929)
Q Consensus 35 ~~~~~~~~esptgtgktl~~l~~~l~~~ 62 (929)
..+.+.++-++||+|||-++-+..++.+
T Consensus 165 ~~~pHlLIaG~TGSGKSt~L~~li~sLl 192 (512)
T 2ius_A 165 AKMPHLLVAGTTGSGASVGVNAMILSML 192 (512)
T ss_dssp GGSCSEEEECCTTSSHHHHHHHHHHHHH
T ss_pred ccCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 3468999999999999988766555443
No 335
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=30.45 E-value=24 Score=35.27 Aligned_cols=17 Identities=29% Similarity=0.696 Sum_probs=14.3
Q ss_pred CceeeeCCCCCcchHHH
Q 002378 38 GVSMLESPTGTGKTLSI 54 (929)
Q Consensus 38 ~~~~~esptgtgktl~~ 54 (929)
.+.++.+|.|||||+.-
T Consensus 6 mi~l~tG~pGsGKT~~a 22 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKM 22 (199)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred eEEEEEeCCCCCHHHHH
Confidence 36789999999999853
No 336
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=30.42 E-value=18 Score=35.60 Aligned_cols=18 Identities=28% Similarity=0.339 Sum_probs=15.3
Q ss_pred HcCCceeeeCCCCCcchH
Q 002378 35 ENGGVSMLESPTGTGKTL 52 (929)
Q Consensus 35 ~~~~~~~~esptgtgktl 52 (929)
..|...++.+|.|+|||-
T Consensus 27 ~~g~~i~l~G~~GsGKST 44 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTT 44 (200)
T ss_dssp -CCCEEEEECCTTSCHHH
T ss_pred CCCcEEEEECCCCCCHHH
Confidence 468899999999999983
No 337
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=30.14 E-value=15 Score=36.76 Aligned_cols=17 Identities=18% Similarity=0.218 Sum_probs=14.4
Q ss_pred cCCceeeeCCCCCcchH
Q 002378 36 NGGVSMLESPTGTGKTL 52 (929)
Q Consensus 36 ~~~~~~~esptgtgktl 52 (929)
.+..++|+||.|+|||-
T Consensus 4 ~~~~I~l~G~~GsGKsT 20 (222)
T 1zak_A 4 DPLKVMISGAPASGKGT 20 (222)
T ss_dssp CSCCEEEEESTTSSHHH
T ss_pred CCeEEEEECCCCCCHHH
Confidence 34678999999999983
No 338
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=30.14 E-value=33 Score=33.95 Aligned_cols=27 Identities=19% Similarity=0.332 Sum_probs=18.7
Q ss_pred HHHHHHHHH----HcCCceeeeCCCCCcchH
Q 002378 26 FMKALYCSL----ENGGVSMLESPTGTGKTL 52 (929)
Q Consensus 26 ~M~~v~~~~----~~~~~~~~esptgtgktl 52 (929)
+...|.+.+ ..|....+-+|+|+|||-
T Consensus 7 ~~~~~~~~~~~~~~~g~~v~I~G~sGsGKST 37 (208)
T 3c8u_A 7 LCQGVLERLDPRQPGRQLVALSGAPGSGKST 37 (208)
T ss_dssp HHHHHHHHSCTTCCSCEEEEEECCTTSCTHH
T ss_pred HHHHHHHHHHhcCCCCeEEEEECCCCCCHHH
Confidence 444444444 346677889999999983
No 339
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=29.99 E-value=15 Score=35.69 Aligned_cols=17 Identities=24% Similarity=0.335 Sum_probs=14.5
Q ss_pred cCCceeeeCCCCCcchH
Q 002378 36 NGGVSMLESPTGTGKTL 52 (929)
Q Consensus 36 ~~~~~~~esptgtgktl 52 (929)
.+..+++++|.|+|||-
T Consensus 4 ~~~~I~l~G~~GsGKST 20 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTT 20 (193)
T ss_dssp CCEEEEEEESTTSSHHH
T ss_pred CCeEEEEECCCCCCHHH
Confidence 35678999999999984
No 340
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=29.82 E-value=15 Score=36.71 Aligned_cols=25 Identities=20% Similarity=0.217 Sum_probs=19.7
Q ss_pred HHHcCCceeeeCCCCCcchHHHHHH
Q 002378 33 SLENGGVSMLESPTGTGKTLSIICS 57 (929)
Q Consensus 33 ~~~~~~~~~~esptgtgktl~~l~~ 57 (929)
.+..|+...+-+|+|+|||.-+.+-
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l 45 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTL 45 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHH
Confidence 4567889999999999999654443
No 341
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=29.80 E-value=19 Score=37.85 Aligned_cols=32 Identities=25% Similarity=0.284 Sum_probs=24.7
Q ss_pred HHHHHHHHHcCCceeeeCCCCCcchHHHHHHH
Q 002378 27 MKALYCSLENGGVSMLESPTGTGKTLSIICSA 58 (929)
Q Consensus 27 M~~v~~~~~~~~~~~~esptgtgktl~~l~~~ 58 (929)
...+.-.|..|...++-+|+|+|||.-+++-+
T Consensus 25 Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia 56 (296)
T 1cr0_A 25 INDKTLGARGGEVIMVTSGSGMGKSTFVRQQA 56 (296)
T ss_dssp HHHHHCSBCTTCEEEEEESTTSSHHHHHHHHH
T ss_pred HHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHH
Confidence 45555578889999999999999996554433
No 342
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=29.77 E-value=16 Score=35.10 Aligned_cols=17 Identities=35% Similarity=0.483 Sum_probs=14.7
Q ss_pred cCCceeeeCCCCCcchH
Q 002378 36 NGGVSMLESPTGTGKTL 52 (929)
Q Consensus 36 ~~~~~~~esptgtgktl 52 (929)
.|...+|++|.|+|||-
T Consensus 4 ~g~~i~l~G~~GsGKST 20 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTT 20 (179)
T ss_dssp CCEEEEEECCTTSSHHH
T ss_pred CCcEEEEECCCCCCHHH
Confidence 46788999999999984
No 343
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=29.68 E-value=33 Score=33.34 Aligned_cols=26 Identities=19% Similarity=0.103 Sum_probs=18.4
Q ss_pred CceeeeCCCCCcchHHHHHHHHHhHHH
Q 002378 38 GVSMLESPTGTGKTLSIICSALQWVVD 64 (929)
Q Consensus 38 ~~~~~esptgtgktl~~l~~~l~~~~~ 64 (929)
....+-+|.|+|||- ++...+.+|..
T Consensus 5 ~~i~i~G~sGsGKTT-l~~~L~~~l~~ 30 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTT-LMEKWVAAAVR 30 (169)
T ss_dssp CEEEEECCTTSSHHH-HHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHH-HHHHHHHhhHh
Confidence 356778899999984 55556666653
No 344
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=29.49 E-value=19 Score=36.46 Aligned_cols=16 Identities=38% Similarity=0.582 Sum_probs=13.9
Q ss_pred CCceeeeCCCCCcchH
Q 002378 37 GGVSMLESPTGTGKTL 52 (929)
Q Consensus 37 ~~~~~~esptgtgktl 52 (929)
+..++|++|.|+|||-
T Consensus 16 ~~~I~l~G~~GsGKsT 31 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGT 31 (233)
T ss_dssp CCEEEEECCTTSSHHH
T ss_pred CeEEEEECCCCCCHHH
Confidence 4679999999999983
No 345
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=29.42 E-value=18 Score=36.79 Aligned_cols=16 Identities=38% Similarity=0.561 Sum_probs=14.9
Q ss_pred cCCceeeeCCCCCcch
Q 002378 36 NGGVSMLESPTGTGKT 51 (929)
Q Consensus 36 ~~~~~~~esptgtgkt 51 (929)
.|..++||+|.|+|||
T Consensus 4 ~g~~i~~eG~~g~GKs 19 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKT 19 (216)
T ss_dssp CCCEEEEEECSSSSHH
T ss_pred CCeEEEEECCCCCCHH
Confidence 5889999999999998
No 346
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=29.38 E-value=19 Score=35.93 Aligned_cols=17 Identities=29% Similarity=0.374 Sum_probs=14.4
Q ss_pred cCCceeeeCCCCCcchH
Q 002378 36 NGGVSMLESPTGTGKTL 52 (929)
Q Consensus 36 ~~~~~~~esptgtgktl 52 (929)
.+..++|++|.|+|||-
T Consensus 3 ~~~~I~l~G~~GsGKsT 19 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGT 19 (220)
T ss_dssp CCCEEEEECCTTSSHHH
T ss_pred CCcEEEEECCCCCCHHH
Confidence 35678999999999983
No 347
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=29.19 E-value=20 Score=37.50 Aligned_cols=27 Identities=33% Similarity=0.480 Sum_probs=21.2
Q ss_pred HHHcCCceeeeCCCCCcchHHHHHHHH
Q 002378 33 SLENGGVSMLESPTGTGKTLSIICSAL 59 (929)
Q Consensus 33 ~~~~~~~~~~esptgtgktl~~l~~~l 59 (929)
.|..|...++-+|+|+|||.-+++-+.
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 466789999999999999975554443
No 348
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=29.01 E-value=18 Score=34.46 Aligned_cols=15 Identities=20% Similarity=0.324 Sum_probs=12.8
Q ss_pred CceeeeCCCCCcchH
Q 002378 38 GVSMLESPTGTGKTL 52 (929)
Q Consensus 38 ~~~~~esptgtgktl 52 (929)
..+++.+|.|+|||-
T Consensus 3 ~~I~i~G~~GsGKST 17 (181)
T 1ly1_A 3 KIILTIGCPGSGKST 17 (181)
T ss_dssp EEEEEECCTTSSHHH
T ss_pred eEEEEecCCCCCHHH
Confidence 357899999999984
No 349
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=28.99 E-value=20 Score=34.81 Aligned_cols=17 Identities=35% Similarity=0.477 Sum_probs=14.9
Q ss_pred cCCceeeeCCCCCcchH
Q 002378 36 NGGVSMLESPTGTGKTL 52 (929)
Q Consensus 36 ~~~~~~~esptgtgktl 52 (929)
.+.+++|.+|.|+|||-
T Consensus 9 ~~~~I~l~G~~GsGKST 25 (184)
T 1y63_A 9 KGINILITGTPGTGKTS 25 (184)
T ss_dssp SSCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 46789999999999994
No 350
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=28.78 E-value=23 Score=36.30 Aligned_cols=17 Identities=24% Similarity=0.391 Sum_probs=14.3
Q ss_pred cCCceeeeCCCCCcchH
Q 002378 36 NGGVSMLESPTGTGKTL 52 (929)
Q Consensus 36 ~~~~~~~esptgtgktl 52 (929)
.+..++|.+|.|+|||-
T Consensus 28 ~~~~I~l~G~~GsGKsT 44 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGT 44 (243)
T ss_dssp CCEEEEEECCTTSSHHH
T ss_pred CCcEEEEECCCCCCHHH
Confidence 45678999999999983
No 351
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=28.72 E-value=17 Score=36.78 Aligned_cols=18 Identities=28% Similarity=0.372 Sum_probs=15.3
Q ss_pred HcCCceeeeCCCCCcchH
Q 002378 35 ENGGVSMLESPTGTGKTL 52 (929)
Q Consensus 35 ~~~~~~~~esptgtgktl 52 (929)
..|....|++|.|+|||-
T Consensus 18 ~~g~~i~i~G~~GsGKST 35 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTT 35 (230)
T ss_dssp CCCEEEEEECSTTSCHHH
T ss_pred CCceEEEEECCCCCCHHH
Confidence 456788999999999984
No 352
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=28.71 E-value=25 Score=39.34 Aligned_cols=39 Identities=26% Similarity=0.361 Sum_probs=27.5
Q ss_pred CCCCHHHHHHHHH---HHHHHHcCCc--eeeeCCCCCcchHHHH
Q 002378 17 YKPYSIQTDFMKA---LYCSLENGGV--SMLESPTGTGKTLSII 55 (929)
Q Consensus 17 f~py~~Q~~~M~~---v~~~~~~~~~--~~~esptgtgktl~~l 55 (929)
|.|-..|.+.-+. +++.+.+|-+ ++.-+.||||||-+++
T Consensus 116 F~~~~~Q~~Vf~~v~~lv~~~l~G~N~tifAYGqTGSGKTyTM~ 159 (403)
T 4etp_A 116 FDQQDTNVDVFKEVGQLVQSSLDGYNVAIFAYGQTGSGKTFTML 159 (403)
T ss_dssp ECTTCCHHHHHHHHHHHHHHHHTTCCEEEEEESCTTSSHHHHHH
T ss_pred ECCCCchHHHHHHHHHHHHHHhCCcceEEEEECCCCCCCceEeC
Confidence 4477777776554 4555667755 3458999999999884
No 353
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=28.41 E-value=14 Score=35.93 Aligned_cols=17 Identities=41% Similarity=0.501 Sum_probs=14.8
Q ss_pred cCCceeeeCCCCCcchH
Q 002378 36 NGGVSMLESPTGTGKTL 52 (929)
Q Consensus 36 ~~~~~~~esptgtgktl 52 (929)
.|...+|+++.|+|||-
T Consensus 12 ~~~~i~l~G~~GsGKsT 28 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTT 28 (186)
T ss_dssp CCEEEEEECCTTSSHHH
T ss_pred CCcEEEEEcCCCCCHHH
Confidence 46788999999999984
No 354
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=28.33 E-value=17 Score=35.81 Aligned_cols=18 Identities=28% Similarity=0.468 Sum_probs=15.6
Q ss_pred HcCCceeeeCCCCCcchH
Q 002378 35 ENGGVSMLESPTGTGKTL 52 (929)
Q Consensus 35 ~~~~~~~~esptgtgktl 52 (929)
..+..++|++|.|+|||-
T Consensus 7 ~~~~~I~l~G~~GsGKsT 24 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKST 24 (215)
T ss_dssp CCCCEEEEEESTTSSHHH
T ss_pred cCCcEEEEECCCCCCHHH
Confidence 357889999999999993
No 355
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=28.16 E-value=15 Score=35.44 Aligned_cols=13 Identities=23% Similarity=0.603 Sum_probs=11.9
Q ss_pred ceeeeCCCCCcch
Q 002378 39 VSMLESPTGTGKT 51 (929)
Q Consensus 39 ~~~~esptgtgkt 51 (929)
.++|++|.|+|||
T Consensus 3 ~I~i~G~~GsGKs 15 (194)
T 1nks_A 3 IGIVTGIPGVGKS 15 (194)
T ss_dssp EEEEEECTTSCHH
T ss_pred EEEEECCCCCCHH
Confidence 5789999999998
No 356
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=27.91 E-value=18 Score=34.59 Aligned_cols=17 Identities=24% Similarity=0.442 Sum_probs=14.6
Q ss_pred cCCceeeeCCCCCcchH
Q 002378 36 NGGVSMLESPTGTGKTL 52 (929)
Q Consensus 36 ~~~~~~~esptgtgktl 52 (929)
.|...+|.+|.|+|||-
T Consensus 7 ~g~~i~l~G~~GsGKST 23 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSA 23 (175)
T ss_dssp TSEEEEEECSTTSCHHH
T ss_pred CCcEEEEEcCCCCCHHH
Confidence 46788999999999984
No 357
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=27.90 E-value=20 Score=43.87 Aligned_cols=33 Identities=33% Similarity=0.340 Sum_probs=22.6
Q ss_pred CHHHHHHHHHHHHH-HHc-----------CCceeeeCCCCCcchH
Q 002378 20 YSIQTDFMKALYCS-LEN-----------GGVSMLESPTGTGKTL 52 (929)
Q Consensus 20 y~~Q~~~M~~v~~~-~~~-----------~~~~~~esptgtgktl 52 (929)
++-|++-++.++.- |.. -+.+||.+|.|||||+
T Consensus 209 l~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~ 253 (806)
T 3cf2_A 209 CRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTL 253 (806)
T ss_dssp CCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHH
T ss_pred HHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHH
Confidence 45566555555543 443 2568999999999996
No 358
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=27.89 E-value=37 Score=33.06 Aligned_cols=25 Identities=20% Similarity=0.300 Sum_probs=17.6
Q ss_pred CceeeeCCCCCcchHHHHHHHHHhHH
Q 002378 38 GVSMLESPTGTGKTLSIICSALQWVV 63 (929)
Q Consensus 38 ~~~~~esptgtgktl~~l~~~l~~~~ 63 (929)
...++-+|.|+||| +|+...+.++.
T Consensus 7 ~~i~i~G~sGsGKT-Tl~~~l~~~l~ 31 (174)
T 1np6_A 7 PLLAFAAWSGTGKT-TLLKKLIPALC 31 (174)
T ss_dssp CEEEEECCTTSCHH-HHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHH-HHHHHHHHhcc
Confidence 56778999999998 44555555543
No 359
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=27.88 E-value=26 Score=38.73 Aligned_cols=38 Identities=26% Similarity=0.271 Sum_probs=26.5
Q ss_pred CCCHHHHHHHHHHH---HHHHcCCc--eeeeCCCCCcchHHHH
Q 002378 18 KPYSIQTDFMKALY---CSLENGGV--SMLESPTGTGKTLSII 55 (929)
Q Consensus 18 ~py~~Q~~~M~~v~---~~~~~~~~--~~~esptgtgktl~~l 55 (929)
.|...|.+..+.+- +.+.+|-+ ++.-+.||||||-+++
T Consensus 92 ~~~~~Q~~Vy~~v~~lv~~~l~G~N~tifAYGqTGSGKTyTM~ 134 (376)
T 2rep_A 92 PPGSGQDEVFEEIAMLVQSALDGYPVCIFAYGQTGSGKTFTME 134 (376)
T ss_dssp CTTCCHHHHHHHHHHHHHGGGGTCCEEEEEECSTTSSHHHHHT
T ss_pred CCcccchhhhhhHHHHHHHhcCCCceEEEEeCCCCCCCceEee
Confidence 47778888776653 44445644 4458999999997764
No 360
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=27.76 E-value=18 Score=36.79 Aligned_cols=18 Identities=33% Similarity=0.538 Sum_probs=15.6
Q ss_pred HcCCceeeeCCCCCcchH
Q 002378 35 ENGGVSMLESPTGTGKTL 52 (929)
Q Consensus 35 ~~~~~~~~esptgtgktl 52 (929)
..|..++||+|.|+|||-
T Consensus 24 ~~g~~i~i~G~~GsGKsT 41 (229)
T 4eaq_A 24 AMSAFITFEGPEGSGKTT 41 (229)
T ss_dssp CCCEEEEEECCTTSCHHH
T ss_pred CCCeEEEEEcCCCCCHHH
Confidence 367889999999999984
No 361
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=27.75 E-value=32 Score=37.86 Aligned_cols=36 Identities=19% Similarity=0.308 Sum_probs=25.4
Q ss_pred CHHHHHHHHH----HHHHHHcCCc--eeeeCCCCCcchHHHH
Q 002378 20 YSIQTDFMKA----LYCSLENGGV--SMLESPTGTGKTLSII 55 (929)
Q Consensus 20 y~~Q~~~M~~----v~~~~~~~~~--~~~esptgtgktl~~l 55 (929)
|..|.+..+. +++.+.+|-+ ++.-+.||||||-+++
T Consensus 67 ~asQ~~Vy~~~~~plv~~~l~G~N~tifAYGqTGSGKTyTm~ 108 (366)
T 2zfi_A 67 YASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMM 108 (366)
T ss_dssp CCCHHHHHHHTHHHHHHHHHTTCCEEEEEECSTTSSHHHHHT
T ss_pred cCcHHHHHHHHHHHHHHHHhcCCeeEEEEeCCCCCCCceEee
Confidence 3678877655 4556667755 3458999999997763
No 362
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=27.72 E-value=19 Score=35.43 Aligned_cols=17 Identities=24% Similarity=0.401 Sum_probs=15.0
Q ss_pred cCCceeeeCCCCCcchH
Q 002378 36 NGGVSMLESPTGTGKTL 52 (929)
Q Consensus 36 ~~~~~~~esptgtgktl 52 (929)
.+..++|++|.|+|||-
T Consensus 9 ~~~~I~l~G~~GsGKST 25 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKST 25 (212)
T ss_dssp CSCEEEEEESTTSSHHH
T ss_pred cCCEEEEEcCCCCCHHH
Confidence 56789999999999994
No 363
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=27.48 E-value=16 Score=40.78 Aligned_cols=14 Identities=36% Similarity=0.615 Sum_probs=12.3
Q ss_pred CceeeeCCCCCcch
Q 002378 38 GVSMLESPTGTGKT 51 (929)
Q Consensus 38 ~~~~~esptgtgkt 51 (929)
+.+++-+|||+|||
T Consensus 3 ~~i~i~GptgsGKt 16 (409)
T 3eph_A 3 KVIVIAGTTGVGKS 16 (409)
T ss_dssp EEEEEEECSSSSHH
T ss_pred cEEEEECcchhhHH
Confidence 45788999999999
No 364
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=27.39 E-value=22 Score=34.95 Aligned_cols=15 Identities=33% Similarity=0.450 Sum_probs=13.3
Q ss_pred CceeeeCCCCCcchH
Q 002378 38 GVSMLESPTGTGKTL 52 (929)
Q Consensus 38 ~~~~~esptgtgktl 52 (929)
..++|++|.|+|||-
T Consensus 21 ~~I~l~G~~GsGKST 35 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGT 35 (201)
T ss_dssp CEEEEECCTTSSHHH
T ss_pred eEEEEECCCCCCHHH
Confidence 578899999999994
No 365
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=27.30 E-value=25 Score=42.95 Aligned_cols=22 Identities=32% Similarity=0.486 Sum_probs=16.7
Q ss_pred CceeeeCCCCCcchHHHHHHHHHh
Q 002378 38 GVSMLESPTGTGKTLSIICSALQW 61 (929)
Q Consensus 38 ~~~~~esptgtgktl~~l~~~l~~ 61 (929)
+..+|.+|.|||||+ |.-+++.
T Consensus 512 ~gvLl~GPPGtGKT~--lAkaiA~ 533 (806)
T 3cf2_A 512 KGVLFYGPPGCGKTL--LAKAIAN 533 (806)
T ss_dssp SCCEEESSTTSSHHH--HHHHHHH
T ss_pred ceEEEecCCCCCchH--HHHHHHH
Confidence 568899999999994 5555543
No 366
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=27.16 E-value=20 Score=36.88 Aligned_cols=17 Identities=29% Similarity=0.485 Sum_probs=15.4
Q ss_pred cCCceeeeCCCCCcchH
Q 002378 36 NGGVSMLESPTGTGKTL 52 (929)
Q Consensus 36 ~~~~~~~esptgtgktl 52 (929)
.|..++||+|.|+|||-
T Consensus 26 ~~~~i~~eG~~GsGKsT 42 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKST 42 (236)
T ss_dssp CCCEEEEEESTTSCHHH
T ss_pred CCeEEEEECCCCCCHHH
Confidence 58899999999999994
No 367
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=26.99 E-value=28 Score=39.40 Aligned_cols=35 Identities=11% Similarity=0.185 Sum_probs=25.5
Q ss_pred HHHHHHHHHcCCceeeeCCCCCcchHHHHHHHHHh
Q 002378 27 MKALYCSLENGGVSMLESPTGTGKTLSIICSALQW 61 (929)
Q Consensus 27 M~~v~~~~~~~~~~~~esptgtgktl~~l~~~l~~ 61 (929)
+..+...|..|...++-+|+|+|||.-.+.-+...
T Consensus 193 LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~ 227 (454)
T 2r6a_A 193 LDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNV 227 (454)
T ss_dssp HHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 34444567778999999999999997555554444
No 368
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=26.78 E-value=20 Score=34.38 Aligned_cols=17 Identities=29% Similarity=0.509 Sum_probs=10.2
Q ss_pred cCCceeeeCCCCCcchH
Q 002378 36 NGGVSMLESPTGTGKTL 52 (929)
Q Consensus 36 ~~~~~~~esptgtgktl 52 (929)
.+..++|++|.|+|||-
T Consensus 4 ~~~~I~l~G~~GsGKST 20 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTH 20 (183)
T ss_dssp -CCEEEEECCC----CH
T ss_pred CCeEEEEECCCCCCHHH
Confidence 35789999999999984
No 369
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=26.70 E-value=31 Score=32.51 Aligned_cols=23 Identities=22% Similarity=0.380 Sum_probs=16.9
Q ss_pred CceeeeCCCCCcchHHHHHHHHHhH
Q 002378 38 GVSMLESPTGTGKTLSIICSALQWV 62 (929)
Q Consensus 38 ~~~~~esptgtgktl~~l~~~l~~~ 62 (929)
...++-+|+|+|||-- .-||.|+
T Consensus 24 g~~~I~G~NGsGKSti--l~Ai~~~ 46 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSL--LDAILVG 46 (149)
T ss_dssp EEEEEECCTTSSHHHH--HHHHHHH
T ss_pred CeEEEECCCCCCHHHH--HHHHHHH
Confidence 4667899999999963 4456664
No 370
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=26.29 E-value=32 Score=32.98 Aligned_cols=22 Identities=27% Similarity=0.493 Sum_probs=16.5
Q ss_pred ceeeeCCCCCcchHHHHHHHHHhH
Q 002378 39 VSMLESPTGTGKTLSIICSALQWV 62 (929)
Q Consensus 39 ~~~~esptgtgktl~~l~~~l~~~ 62 (929)
..++-+|+|+|||- |.-+|.|+
T Consensus 28 ~~~i~G~NGsGKSt--ll~ai~~~ 49 (182)
T 3kta_A 28 FTAIVGANGSGKSN--IGDAILFV 49 (182)
T ss_dssp EEEEEECTTSSHHH--HHHHHHHH
T ss_pred cEEEECCCCCCHHH--HHHHHHHH
Confidence 67889999999995 33456664
No 371
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=26.17 E-value=38 Score=37.01 Aligned_cols=38 Identities=24% Similarity=0.281 Sum_probs=26.1
Q ss_pred CCCHHHHHHHHHHH---HHHHcCCc--eeeeCCCCCcchHHHH
Q 002378 18 KPYSIQTDFMKALY---CSLENGGV--SMLESPTGTGKTLSII 55 (929)
Q Consensus 18 ~py~~Q~~~M~~v~---~~~~~~~~--~~~esptgtgktl~~l 55 (929)
.|-..|.+..+.+- +.+.+|-+ ++.-+.||||||-+++
T Consensus 61 ~~~~~Q~~Vy~~v~~lv~~~l~G~n~tifAYGqTGSGKTyTM~ 103 (347)
T 1f9v_A 61 DQQDTNVDVFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTML 103 (347)
T ss_dssp CTTCCHHHHHHHHHHHHGGGGGTCCEEEEEECCTTSSHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCceeEEEEECCCCCCCcEecc
Confidence 46667877766543 33345644 4458999999998874
No 372
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=25.41 E-value=36 Score=33.61 Aligned_cols=20 Identities=30% Similarity=0.514 Sum_probs=16.0
Q ss_pred HHHcCCceeeeCCCCCcchH
Q 002378 33 SLENGGVSMLESPTGTGKTL 52 (929)
Q Consensus 33 ~~~~~~~~~~esptgtgktl 52 (929)
.+..|+...|-+|+|+|||-
T Consensus 16 ~i~~Gei~~l~GpnGsGKST 35 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKST 35 (207)
T ss_dssp ---CCCEEEEECSTTSSHHH
T ss_pred CCCCCCEEEEECCCCCCHHH
Confidence 78899999999999999994
No 373
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=25.21 E-value=23 Score=35.02 Aligned_cols=14 Identities=36% Similarity=0.705 Sum_probs=12.2
Q ss_pred ceeeeCCCCCcchH
Q 002378 39 VSMLESPTGTGKTL 52 (929)
Q Consensus 39 ~~~~esptgtgktl 52 (929)
.+||-||+|+|||-
T Consensus 3 pIVi~GPSG~GK~T 16 (186)
T 1ex7_A 3 PIVISGPSGTGKST 16 (186)
T ss_dssp CEEEECCTTSSHHH
T ss_pred EEEEECCCCCCHHH
Confidence 57899999999983
No 374
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=25.17 E-value=24 Score=34.15 Aligned_cols=14 Identities=29% Similarity=0.458 Sum_probs=12.0
Q ss_pred ceeeeCCCCCcchH
Q 002378 39 VSMLESPTGTGKTL 52 (929)
Q Consensus 39 ~~~~esptgtgktl 52 (929)
.++|+||.|+|||-
T Consensus 2 ~I~l~G~~GsGKsT 15 (197)
T 2z0h_A 2 FITFEGIDGSGKST 15 (197)
T ss_dssp EEEEECSTTSSHHH
T ss_pred EEEEECCCCCCHHH
Confidence 46899999999983
No 375
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=25.10 E-value=22 Score=36.84 Aligned_cols=17 Identities=24% Similarity=0.303 Sum_probs=14.3
Q ss_pred cCCceeeeCCCCCcchH
Q 002378 36 NGGVSMLESPTGTGKTL 52 (929)
Q Consensus 36 ~~~~~~~esptgtgktl 52 (929)
.+..++++||.|+|||-
T Consensus 3 ~~~lIvl~G~pGSGKST 19 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKST 19 (260)
T ss_dssp CCEEEEEECCTTSSHHH
T ss_pred CCEEEEEEcCCCCCHHH
Confidence 35678999999999994
No 376
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=24.96 E-value=22 Score=36.72 Aligned_cols=18 Identities=17% Similarity=0.115 Sum_probs=14.8
Q ss_pred HcCCceeeeCCCCCcchH
Q 002378 35 ENGGVSMLESPTGTGKTL 52 (929)
Q Consensus 35 ~~~~~~~~esptgtgktl 52 (929)
..+..++|||+.|+|||-
T Consensus 22 ~~~~~I~ieG~~GsGKST 39 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKST 39 (263)
T ss_dssp -CCEEEEEECSTTSSHHH
T ss_pred cCceEEEEECCCCCCHHH
Confidence 356788999999999993
No 377
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=24.61 E-value=24 Score=35.32 Aligned_cols=16 Identities=25% Similarity=0.279 Sum_probs=13.8
Q ss_pred CCceeeeCCCCCcchH
Q 002378 37 GGVSMLESPTGTGKTL 52 (929)
Q Consensus 37 ~~~~~~esptgtgktl 52 (929)
+..++|++|.|+|||-
T Consensus 5 ~~~I~l~G~~GsGKsT 20 (217)
T 3be4_A 5 KHNLILIGAPGSGKGT 20 (217)
T ss_dssp CCEEEEEECTTSSHHH
T ss_pred ceEEEEECCCCCCHHH
Confidence 4678999999999984
No 378
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=24.53 E-value=27 Score=39.12 Aligned_cols=38 Identities=32% Similarity=0.374 Sum_probs=26.8
Q ss_pred CCCHHHHHHHH---HHHHHHHcCCc--eeeeCCCCCcchHHHH
Q 002378 18 KPYSIQTDFMK---ALYCSLENGGV--SMLESPTGTGKTLSII 55 (929)
Q Consensus 18 ~py~~Q~~~M~---~v~~~~~~~~~--~~~esptgtgktl~~l 55 (929)
.|-..|.+.-+ .+++.+.+|-+ ++.-+.||||||-++.
T Consensus 115 ~~~~~Q~~Vf~~v~plv~~~l~G~n~tifAYGqTGSGKTyTM~ 157 (412)
T 3u06_A 115 HPLSSQSDIFEMVSPLIQSALDGYNICIFAYGQTGSGKTYTMD 157 (412)
T ss_dssp CTTCCHHHHHTTTHHHHHHHHTTCCEEEEEESSTTSSHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCceEEEEecCCCCCCeeEec
Confidence 46667776654 45666667755 3458999999998873
No 379
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=24.18 E-value=47 Score=32.88 Aligned_cols=23 Identities=22% Similarity=0.179 Sum_probs=15.8
Q ss_pred CceeeeCCCCCcchHHHHHHHHHh
Q 002378 38 GVSMLESPTGTGKTLSIICSALQW 61 (929)
Q Consensus 38 ~~~~~esptgtgktl~~l~~~l~~ 61 (929)
..+++-++.|+||| ||+...+.+
T Consensus 39 ~~i~ivG~~gvGKT-tl~~~l~~~ 61 (226)
T 2hf9_A 39 VAFDFMGAIGSGKT-LLIEKLIDN 61 (226)
T ss_dssp EEEEEEESTTSSHH-HHHHHHHHH
T ss_pred eEEEEEcCCCCCHH-HHHHHHHHH
Confidence 34566699999999 565555544
No 380
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=24.14 E-value=27 Score=33.06 Aligned_cols=15 Identities=20% Similarity=0.248 Sum_probs=13.0
Q ss_pred CceeeeCCCCCcchH
Q 002378 38 GVSMLESPTGTGKTL 52 (929)
Q Consensus 38 ~~~~~esptgtgktl 52 (929)
+.++|.+|.|+|||-
T Consensus 3 ~~I~l~G~~GsGKsT 17 (173)
T 1e6c_A 3 EPIFMVGARGCGMTT 17 (173)
T ss_dssp CCEEEESCTTSSHHH
T ss_pred ceEEEECCCCCCHHH
Confidence 468899999999984
No 381
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=23.89 E-value=24 Score=34.54 Aligned_cols=15 Identities=27% Similarity=0.359 Sum_probs=13.1
Q ss_pred CceeeeCCCCCcchH
Q 002378 38 GVSMLESPTGTGKTL 52 (929)
Q Consensus 38 ~~~~~esptgtgktl 52 (929)
..++|++|.|+|||-
T Consensus 16 ~~I~l~G~~GsGKsT 30 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGT 30 (203)
T ss_dssp EEEEEECSTTSSHHH
T ss_pred cEEEEECCCCCCHHH
Confidence 468899999999984
No 382
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=23.86 E-value=27 Score=34.32 Aligned_cols=15 Identities=27% Similarity=0.503 Sum_probs=13.4
Q ss_pred CceeeeCCCCCcchH
Q 002378 38 GVSMLESPTGTGKTL 52 (929)
Q Consensus 38 ~~~~~esptgtgktl 52 (929)
..++|.||.|+|||-
T Consensus 19 ~~I~l~G~~GsGKST 33 (202)
T 3t61_A 19 GSIVVMGVSGSGKSS 33 (202)
T ss_dssp SCEEEECSTTSCHHH
T ss_pred eEEEEECCCCCCHHH
Confidence 578999999999994
No 383
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=23.76 E-value=43 Score=37.85 Aligned_cols=37 Identities=19% Similarity=0.266 Sum_probs=26.1
Q ss_pred CCHHHHHHHHH----HHHHHHcCCc--eeeeCCCCCcchHHHH
Q 002378 19 PYSIQTDFMKA----LYCSLENGGV--SMLESPTGTGKTLSII 55 (929)
Q Consensus 19 py~~Q~~~M~~----v~~~~~~~~~--~~~esptgtgktl~~l 55 (929)
+|..|.+.-+. +++.+.+|-+ ++.-+.||||||-+++
T Consensus 113 ~~asQ~~Vy~~~~~plv~~~l~GyN~tIfAYGQTGSGKTyTM~ 155 (443)
T 2owm_A 113 HYATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTMM 155 (443)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHTTCCEEEEEESSTTSSHHHHHT
T ss_pred cCCCHHHHHHhhhhhHHHHhhcCCceEEEEeCCCCCCCCEEee
Confidence 35678877654 4555667755 4458999999998873
No 384
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=23.73 E-value=29 Score=39.08 Aligned_cols=36 Identities=19% Similarity=0.274 Sum_probs=25.8
Q ss_pred HHHHHHHHHcCCceeeeCCCCCcchHHHHHHHHHhH
Q 002378 27 MKALYCSLENGGVSMLESPTGTGKTLSIICSALQWV 62 (929)
Q Consensus 27 M~~v~~~~~~~~~~~~esptgtgktl~~l~~~l~~~ 62 (929)
+..+...|..|...++-+|+|+|||.-.+.-+....
T Consensus 190 LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a 225 (444)
T 2q6t_A 190 LDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAA 225 (444)
T ss_dssp HHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred hhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 344445677789999999999999965555554443
No 385
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=23.72 E-value=43 Score=36.00 Aligned_cols=32 Identities=28% Similarity=0.443 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHc----------------CCceeeeCCCCCcch-HHH
Q 002378 23 QTDFMKALYCSLEN----------------GGVSMLESPTGTGKT-LSI 54 (929)
Q Consensus 23 Q~~~M~~v~~~~~~----------------~~~~~~esptgtgkt-l~~ 54 (929)
--++|..+...|.. |.-++|-+|.|+||| |++
T Consensus 114 ts~~~~~l~~~l~~~~~~~~~~H~~~v~~~g~~vl~~G~sG~GKSt~a~ 162 (314)
T 1ko7_A 114 TTQLMSRLTTFLEHELARTTSLHGVLVDVYGVGVLITGDSGIGKSETAL 162 (314)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEEESEEEEETTEEEEEEESTTSSHHHHHH
T ss_pred hhHHHHHHHHHHHHhhccceeeeEEEEEECCEEEEEEeCCCCCHHHHHH
Confidence 34677778888887 888999999999995 543
No 386
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=23.68 E-value=42 Score=36.68 Aligned_cols=39 Identities=23% Similarity=0.383 Sum_probs=26.8
Q ss_pred CCCCHHHHHHHHH---HHHHHHcCCc--eeeeCCCCCcchHHHH
Q 002378 17 YKPYSIQTDFMKA---LYCSLENGGV--SMLESPTGTGKTLSII 55 (929)
Q Consensus 17 f~py~~Q~~~M~~---v~~~~~~~~~--~~~esptgtgktl~~l 55 (929)
|.|-..|.+.-+. +++.+.+|-+ ++.-+.||||||-.++
T Consensus 61 f~~~~~Q~~vf~~v~~lv~~~l~G~n~tifAYGqTGSGKTyTm~ 104 (349)
T 3t0q_A 61 FEPSHTNKEIFEEIRQLVQSSLDGYNVCIFAYGQTGSGKTYTML 104 (349)
T ss_dssp ECTTCCHHHHHHHHHHHHHGGGTTCEEEEEEECSTTSSHHHHHH
T ss_pred ECCCccHHHHHHHHHHHHHHHHCCcceeEEEeCCCCCCCceEeC
Confidence 3466678776655 4444456755 3558999999999874
No 387
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=23.62 E-value=25 Score=38.30 Aligned_cols=15 Identities=33% Similarity=0.430 Sum_probs=13.0
Q ss_pred CceeeeCCCCCcchH
Q 002378 38 GVSMLESPTGTGKTL 52 (929)
Q Consensus 38 ~~~~~esptgtgktl 52 (929)
..+++.+|||+|||-
T Consensus 8 ~lI~I~GptgSGKTt 22 (340)
T 3d3q_A 8 FLIVIVGPTASGKTE 22 (340)
T ss_dssp EEEEEECSTTSSHHH
T ss_pred ceEEEECCCcCcHHH
Confidence 478899999999994
No 388
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=23.59 E-value=29 Score=35.43 Aligned_cols=16 Identities=25% Similarity=0.324 Sum_probs=14.2
Q ss_pred CCceeeeCCCCCcchH
Q 002378 37 GGVSMLESPTGTGKTL 52 (929)
Q Consensus 37 ~~~~~~esptgtgktl 52 (929)
+...++.+|.|+|||-
T Consensus 27 ~~~i~l~G~~GsGKST 42 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGT 42 (246)
T ss_dssp CCEEEEECCTTSSHHH
T ss_pred CcEEEEECCCCCCHHH
Confidence 5789999999999983
No 389
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=23.58 E-value=22 Score=34.25 Aligned_cols=15 Identities=27% Similarity=0.397 Sum_probs=13.1
Q ss_pred CceeeeCCCCCcchH
Q 002378 38 GVSMLESPTGTGKTL 52 (929)
Q Consensus 38 ~~~~~esptgtgktl 52 (929)
..++|++|.|+|||-
T Consensus 7 ~~I~l~G~~GsGKsT 21 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGT 21 (194)
T ss_dssp EEEEEEESTTSSHHH
T ss_pred cEEEEECCCCCCHHH
Confidence 468899999999995
No 390
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=23.46 E-value=20 Score=34.42 Aligned_cols=17 Identities=35% Similarity=0.464 Sum_probs=15.6
Q ss_pred HcCCceeeeCCCCCcch
Q 002378 35 ENGGVSMLESPTGTGKT 51 (929)
Q Consensus 35 ~~~~~~~~esptgtgkt 51 (929)
..|....|-+|.|+|||
T Consensus 31 ~~Ge~v~L~G~nGaGKT 47 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKT 47 (158)
T ss_dssp SSCEEEEEECSTTSSHH
T ss_pred CCCCEEEEECCCCCCHH
Confidence 67888999999999998
No 391
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=23.43 E-value=25 Score=34.56 Aligned_cols=17 Identities=29% Similarity=0.558 Sum_probs=15.2
Q ss_pred HcCCceeeeCCCCCcch
Q 002378 35 ENGGVSMLESPTGTGKT 51 (929)
Q Consensus 35 ~~~~~~~~esptgtgkt 51 (929)
..|...++-+|.|+|||
T Consensus 23 ~~g~~i~l~G~sGsGKS 39 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKS 39 (200)
T ss_dssp SCCEEEEEECSTTSSHH
T ss_pred CCCeEEEEECCCCCCHH
Confidence 56788999999999998
No 392
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=23.38 E-value=21 Score=34.61 Aligned_cols=16 Identities=25% Similarity=0.586 Sum_probs=13.3
Q ss_pred CCceeeeCCCCCcchH
Q 002378 37 GGVSMLESPTGTGKTL 52 (929)
Q Consensus 37 ~~~~~~esptgtgktl 52 (929)
|...+|-+|.|+|||-
T Consensus 2 g~ii~l~G~~GaGKST 17 (189)
T 2bdt_A 2 KKLYIITGPAGVGKST 17 (189)
T ss_dssp EEEEEEECSTTSSHHH
T ss_pred CeEEEEECCCCCcHHH
Confidence 4567889999999984
No 393
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=23.31 E-value=40 Score=35.83 Aligned_cols=23 Identities=30% Similarity=0.317 Sum_probs=17.2
Q ss_pred cCCceeeeCCCCCcchHHHHHHH
Q 002378 36 NGGVSMLESPTGTGKTLSIICSA 58 (929)
Q Consensus 36 ~~~~~~~esptgtgktl~~l~~~ 58 (929)
.+++.+|-||+|+|||-.+.+-+
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA 126 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLA 126 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 36688889999999996544433
No 394
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=23.26 E-value=29 Score=36.01 Aligned_cols=29 Identities=24% Similarity=0.279 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHc---CCceeeeCCCCCcchH
Q 002378 24 TDFMKALYCSLEN---GGVSMLESPTGTGKTL 52 (929)
Q Consensus 24 ~~~M~~v~~~~~~---~~~~~~esptgtgktl 52 (929)
....+.+--.+.. |...+|-+|.|+|||-
T Consensus 32 ~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKST 63 (250)
T 3nwj_A 32 QQILKKKAEEVKPYLNGRSMYLVGMMGSGKTT 63 (250)
T ss_dssp CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHH
T ss_pred chhhhhhhhhhhhhcCCCEEEEECCCCCCHHH
Confidence 3456666666677 9999999999999984
No 395
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=23.16 E-value=32 Score=38.92 Aligned_cols=36 Identities=11% Similarity=0.097 Sum_probs=26.2
Q ss_pred HHHHHHHHcCCceeeeCCCCCcchHHHHHHHHHhHH
Q 002378 28 KALYCSLENGGVSMLESPTGTGKTLSIICSALQWVV 63 (929)
Q Consensus 28 ~~v~~~~~~~~~~~~esptgtgktl~~l~~~l~~~~ 63 (929)
..+...|..|...|+.+++|+|||.-.+.-+..+..
T Consensus 188 D~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a~ 223 (444)
T 3bgw_A 188 DRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD 223 (444)
T ss_dssp HHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHHH
T ss_pred HhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHH
Confidence 334445677899999999999999766665555443
No 396
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=23.11 E-value=28 Score=33.50 Aligned_cols=14 Identities=36% Similarity=0.520 Sum_probs=12.1
Q ss_pred ceeeeCCCCCcchH
Q 002378 39 VSMLESPTGTGKTL 52 (929)
Q Consensus 39 ~~~~esptgtgktl 52 (929)
.++|+||.|+|||-
T Consensus 2 ~I~l~G~~GsGKsT 15 (195)
T 2pbr_A 2 LIAFEGIDGSGKTT 15 (195)
T ss_dssp EEEEECSTTSCHHH
T ss_pred EEEEECCCCCCHHH
Confidence 47899999999983
No 397
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=22.70 E-value=33 Score=37.56 Aligned_cols=23 Identities=26% Similarity=0.501 Sum_probs=18.0
Q ss_pred CceeeeCCCCCcchHHHHHHHHHhH
Q 002378 38 GVSMLESPTGTGKTLSIICSALQWV 62 (929)
Q Consensus 38 ~~~~~esptgtgktl~~l~~~l~~~ 62 (929)
..-++.+|||+|||. |.-|+.|+
T Consensus 26 gl~vi~G~NGaGKT~--ileAI~~~ 48 (371)
T 3auy_A 26 GIVAIIGENGSGKSS--IFEAVFFA 48 (371)
T ss_dssp EEEEEEECTTSSHHH--HHHHHHHH
T ss_pred CeEEEECCCCCCHHH--HHHHHHHH
Confidence 567899999999996 45677773
No 398
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=22.37 E-value=15 Score=36.26 Aligned_cols=13 Identities=31% Similarity=0.542 Sum_probs=11.8
Q ss_pred ceeeeCCCCCcch
Q 002378 39 VSMLESPTGTGKT 51 (929)
Q Consensus 39 ~~~~esptgtgkt 51 (929)
.++|+||.|+|||
T Consensus 2 ~I~i~G~~GsGKs 14 (214)
T 1gtv_A 2 LIAIEGVDGAGKR 14 (214)
T ss_dssp EEEEEEEEEEEHH
T ss_pred EEEEEcCCCCCHH
Confidence 5789999999998
No 399
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=22.31 E-value=40 Score=33.45 Aligned_cols=24 Identities=21% Similarity=0.389 Sum_probs=17.7
Q ss_pred CceeeeCCCCCcchHHHHHHHHHhHH
Q 002378 38 GVSMLESPTGTGKTLSIICSALQWVV 63 (929)
Q Consensus 38 ~~~~~esptgtgktl~~l~~~l~~~~ 63 (929)
...++-+|+|+|||-- .-+|.|+-
T Consensus 24 ~~~~I~G~NgsGKSti--l~ai~~~l 47 (203)
T 3qks_A 24 GINLIIGQNGSGKSSL--LDAILVGL 47 (203)
T ss_dssp EEEEEECCTTSSHHHH--HHHHHHHH
T ss_pred CeEEEEcCCCCCHHHH--HHHHHHHh
Confidence 4678889999999953 45566654
No 400
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=22.30 E-value=30 Score=32.71 Aligned_cols=15 Identities=27% Similarity=0.248 Sum_probs=13.5
Q ss_pred CceeeeCCCCCcchH
Q 002378 38 GVSMLESPTGTGKTL 52 (929)
Q Consensus 38 ~~~~~esptgtgktl 52 (929)
++++|.++.|+|||-
T Consensus 8 ~~i~l~G~~GsGKST 22 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSS 22 (168)
T ss_dssp CEEEEESCTTSSHHH
T ss_pred ceEEEECCCCCCHHH
Confidence 688999999999983
No 401
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=22.21 E-value=81 Score=34.18 Aligned_cols=26 Identities=23% Similarity=0.217 Sum_probs=18.7
Q ss_pred CCceeeeCCCCCcchHHHHHHHHHhHH
Q 002378 37 GGVSMLESPTGTGKTLSIICSALQWVV 63 (929)
Q Consensus 37 ~~~~~~esptgtgktl~~l~~~l~~~~ 63 (929)
+..+.|-||+|+||| +||-..+.++.
T Consensus 74 ~~~v~lvG~pgaGKS-TLln~L~~~~~ 99 (349)
T 2www_A 74 AFRVGLSGPPGAGKS-TFIEYFGKMLT 99 (349)
T ss_dssp CEEEEEECCTTSSHH-HHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHH-HHHHHHHHHhh
Confidence 456778999999999 55555555543
No 402
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=22.09 E-value=52 Score=36.04 Aligned_cols=36 Identities=22% Similarity=0.240 Sum_probs=24.5
Q ss_pred CHHHHHHHHH----HHHHHHcCCce--eeeCCCCCcchHHHH
Q 002378 20 YSIQTDFMKA----LYCSLENGGVS--MLESPTGTGKTLSII 55 (929)
Q Consensus 20 y~~Q~~~M~~----v~~~~~~~~~~--~~esptgtgktl~~l 55 (929)
...|.+.-+. +++.+.+|.++ +.-+.||||||-+++
T Consensus 81 ~~sQ~~Vy~~~~~~lv~~~l~G~N~tIfAYGqTGSGKTyTM~ 122 (358)
T 2nr8_A 81 DASQDLVYETVAKDVVSQALDGYNGTIMCYGQTGAGKTYTMM 122 (358)
T ss_dssp SCCHHHHHHHHTHHHHHHHHTTCCEEEEEEESTTSSHHHHHT
T ss_pred CcCHHHHHHHHHHHHHHHHhCCCceEEEEECCCCCCCceEec
Confidence 3467665544 55666677553 448999999998763
No 403
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=22.04 E-value=88 Score=30.69 Aligned_cols=38 Identities=16% Similarity=0.177 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHc--CCceeeeCCCCCcchHHHHHHHHHh
Q 002378 23 QTDFMKALYCSLEN--GGVSMLESPTGTGKTLSIICSALQW 61 (929)
Q Consensus 23 Q~~~M~~v~~~~~~--~~~~~~esptgtgktl~~l~~~l~~ 61 (929)
....+..+...+.. -...++-+++|+||| +|+...+.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKT-Tl~~~l~~~ 53 (221)
T 2wsm_A 14 NKRLAEKNREALRESGTVAVNIMGAIGSGKT-LLIERTIER 53 (221)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEEEECTTSCHH-HHHHHHHHH
T ss_pred cHHHHHHHHHhhcccCceEEEEEcCCCCCHH-HHHHHHHHH
Confidence 33444444444432 346778899999999 555554444
No 404
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=22.03 E-value=30 Score=34.79 Aligned_cols=14 Identities=29% Similarity=0.517 Sum_probs=12.2
Q ss_pred ceeeeCCCCCcchH
Q 002378 39 VSMLESPTGTGKTL 52 (929)
Q Consensus 39 ~~~~esptgtgktl 52 (929)
.++|++|.|+|||-
T Consensus 2 ~I~l~G~~GsGKsT 15 (223)
T 2xb4_A 2 NILIFGPNGSGKGT 15 (223)
T ss_dssp EEEEECCTTSCHHH
T ss_pred EEEEECCCCCCHHH
Confidence 47899999999984
No 405
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=21.87 E-value=24 Score=36.18 Aligned_cols=19 Identities=21% Similarity=0.454 Sum_probs=16.4
Q ss_pred HHcCCceeeeCCCCCcchH
Q 002378 34 LENGGVSMLESPTGTGKTL 52 (929)
Q Consensus 34 ~~~~~~~~~esptgtgktl 52 (929)
+..|+...+-+|+|+|||-
T Consensus 28 i~~Ge~~~i~G~nGsGKST 46 (237)
T 2cbz_A 28 IPEGALVAVVGQVGCGKSS 46 (237)
T ss_dssp ECTTCEEEEECSTTSSHHH
T ss_pred ECCCCEEEEECCCCCCHHH
Confidence 4578899999999999983
No 406
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=21.84 E-value=47 Score=36.45 Aligned_cols=35 Identities=23% Similarity=0.252 Sum_probs=24.3
Q ss_pred HHHHHHHHH----HHHHHHcCCc--eeeeCCCCCcchHHHH
Q 002378 21 SIQTDFMKA----LYCSLENGGV--SMLESPTGTGKTLSII 55 (929)
Q Consensus 21 ~~Q~~~M~~----v~~~~~~~~~--~~~esptgtgktl~~l 55 (929)
..|.+.-+. +++.+.+|-+ ++.-+.||||||-+++
T Consensus 83 ~sQ~~Vy~~~~~plv~~~l~G~N~tifAYGQTGSGKTyTM~ 123 (359)
T 3nwn_A 83 ASQDLVYETVAKDVVSQALDGYNGTIMCYGQTGAGKTYTMM 123 (359)
T ss_dssp CCHHHHHHHHTHHHHHHHHTTCCEEEEEEESTTSSHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCCCCCccEEeC
Confidence 357765543 5566667755 4458999999998764
No 407
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=21.70 E-value=32 Score=32.42 Aligned_cols=14 Identities=21% Similarity=0.069 Sum_probs=12.2
Q ss_pred ceeeeCCCCCcchH
Q 002378 39 VSMLESPTGTGKTL 52 (929)
Q Consensus 39 ~~~~esptgtgktl 52 (929)
.++|++|.|+|||-
T Consensus 2 ~I~l~G~~GsGKsT 15 (168)
T 2pt5_A 2 RIYLIGFMCSGKST 15 (168)
T ss_dssp EEEEESCTTSCHHH
T ss_pred eEEEECCCCCCHHH
Confidence 57899999999983
No 408
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=21.66 E-value=32 Score=36.95 Aligned_cols=26 Identities=19% Similarity=0.157 Sum_probs=19.6
Q ss_pred HHHcCCceeeeCCCCCcchHHHHHHH
Q 002378 33 SLENGGVSMLESPTGTGKTLSIICSA 58 (929)
Q Consensus 33 ~~~~~~~~~~esptgtgktl~~l~~~ 58 (929)
.|..|...++.+|+|+|||.-.+..+
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la 128 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLS 128 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHH
Confidence 34567899999999999996444433
No 409
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=21.40 E-value=30 Score=34.21 Aligned_cols=14 Identities=29% Similarity=0.297 Sum_probs=11.9
Q ss_pred ceeeeCCCCCcchH
Q 002378 39 VSMLESPTGTGKTL 52 (929)
Q Consensus 39 ~~~~esptgtgktl 52 (929)
.++|.||.|+|||-
T Consensus 2 ~I~l~G~~GsGKsT 15 (216)
T 3fb4_A 2 NIVLMGLPGAGKGT 15 (216)
T ss_dssp EEEEECSTTSSHHH
T ss_pred EEEEECCCCCCHHH
Confidence 46889999999983
No 410
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=21.20 E-value=29 Score=34.76 Aligned_cols=16 Identities=38% Similarity=0.650 Sum_probs=13.9
Q ss_pred CCceeeeCCCCCcchH
Q 002378 37 GGVSMLESPTGTGKTL 52 (929)
Q Consensus 37 ~~~~~~esptgtgktl 52 (929)
|+.++|||+-|+|||-
T Consensus 2 ~kFI~~EG~dGsGKsT 17 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTT 17 (205)
T ss_dssp CEEEEEECCTTSCHHH
T ss_pred CCEEEEECCCCCcHHH
Confidence 4678999999999984
No 411
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=21.19 E-value=37 Score=36.98 Aligned_cols=36 Identities=14% Similarity=0.280 Sum_probs=26.6
Q ss_pred HHHHHHHHHcCCceeeeCCCCCcchHHHHHHHHHhH
Q 002378 27 MKALYCSLENGGVSMLESPTGTGKTLSIICSALQWV 62 (929)
Q Consensus 27 M~~v~~~~~~~~~~~~esptgtgktl~~l~~~l~~~ 62 (929)
+..+...|..|...|+.+|+|+|||.-.+.-+....
T Consensus 36 LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a 71 (338)
T 4a1f_A 36 LDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSAL 71 (338)
T ss_dssp HHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 344455788899999999999999976555554443
No 412
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=21.06 E-value=31 Score=34.17 Aligned_cols=14 Identities=29% Similarity=0.290 Sum_probs=11.9
Q ss_pred ceeeeCCCCCcchH
Q 002378 39 VSMLESPTGTGKTL 52 (929)
Q Consensus 39 ~~~~esptgtgktl 52 (929)
.++|.||.|+|||-
T Consensus 2 ~I~l~G~~GsGKsT 15 (216)
T 3dl0_A 2 NLVLMGLPGAGKGT 15 (216)
T ss_dssp EEEEECSTTSSHHH
T ss_pred EEEEECCCCCCHHH
Confidence 46889999999983
No 413
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=20.86 E-value=26 Score=35.87 Aligned_cols=18 Identities=28% Similarity=0.706 Sum_probs=16.0
Q ss_pred HHcCCceeeeCCCCCcch
Q 002378 34 LENGGVSMLESPTGTGKT 51 (929)
Q Consensus 34 ~~~~~~~~~esptgtgkt 51 (929)
+..|+...+-+|+|+|||
T Consensus 28 i~~Ge~~~iiG~nGsGKS 45 (235)
T 3tif_A 28 IKEGEFVSIMGPSGSGKS 45 (235)
T ss_dssp ECTTCEEEEECSTTSSHH
T ss_pred EcCCCEEEEECCCCCcHH
Confidence 457889999999999999
No 414
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=20.80 E-value=52 Score=33.29 Aligned_cols=28 Identities=18% Similarity=0.183 Sum_probs=22.8
Q ss_pred cCCceeeeCCCCCcchHHHHHHHHHhHH
Q 002378 36 NGGVSMLESPTGTGKTLSIICSALQWVV 63 (929)
Q Consensus 36 ~~~~~~~esptgtgktl~~l~~~l~~~~ 63 (929)
.|+..++.+|-|+|||..+|-.+..+..
T Consensus 27 ~G~l~vitG~MgsGKTT~lL~~a~r~~~ 54 (214)
T 2j9r_A 27 NGWIEVICGSMFSGKSEELIRRVRRTQF 54 (214)
T ss_dssp SCEEEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHH
Confidence 4677888999999999998877776643
No 415
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=20.67 E-value=57 Score=35.94 Aligned_cols=27 Identities=19% Similarity=0.337 Sum_probs=19.9
Q ss_pred HHHHHHHHHH----cCCceeeeCCCCCcchH
Q 002378 26 FMKALYCSLE----NGGVSMLESPTGTGKTL 52 (929)
Q Consensus 26 ~M~~v~~~~~----~~~~~~~esptgtgktl 52 (929)
.|+.+++.+. ....+++.+++|||||+
T Consensus 145 ~m~~l~~~i~~~a~~~~~vli~Ge~GtGK~~ 175 (387)
T 1ny5_A 145 KMKEILEKIKKISCAECPVLITGESGVGKEV 175 (387)
T ss_dssp HHHHHHHHHHHHTTCCSCEEEECSTTSSHHH
T ss_pred HhhHHHHHHHHhcCCCCCeEEecCCCcCHHH
Confidence 5666655543 34678999999999995
No 416
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=20.60 E-value=37 Score=33.39 Aligned_cols=18 Identities=22% Similarity=0.320 Sum_probs=14.5
Q ss_pred CCceeeeCCCCCcch-HHH
Q 002378 37 GGVSMLESPTGTGKT-LSI 54 (929)
Q Consensus 37 ~~~~~~esptgtgkt-l~~ 54 (929)
|.-.+|-+|.|+||| |++
T Consensus 16 G~gvli~G~SGaGKStlal 34 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSL 34 (181)
T ss_dssp TEEEEEEESSSSSHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHH
Confidence 556788999999999 544
No 417
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=20.51 E-value=26 Score=35.68 Aligned_cols=19 Identities=37% Similarity=0.594 Sum_probs=16.4
Q ss_pred HHcCCceeeeCCCCCcchH
Q 002378 34 LENGGVSMLESPTGTGKTL 52 (929)
Q Consensus 34 ~~~~~~~~~esptgtgktl 52 (929)
+..|+...+-+|.|+|||-
T Consensus 31 i~~Ge~~~i~G~nGsGKST 49 (229)
T 2pze_A 31 IERGQLLAVAGSTGAGKTS 49 (229)
T ss_dssp EETTCEEEEECCTTSSHHH
T ss_pred EcCCCEEEEECCCCCCHHH
Confidence 4578899999999999993
No 418
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=20.46 E-value=38 Score=34.33 Aligned_cols=18 Identities=28% Similarity=0.411 Sum_probs=14.3
Q ss_pred HHcCCceeeeCCCCCcch
Q 002378 34 LENGGVSMLESPTGTGKT 51 (929)
Q Consensus 34 ~~~~~~~~~esptgtgkt 51 (929)
+...+++|+-+|.|+||+
T Consensus 26 ~~k~kiI~llGpPGsGKg 43 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKG 43 (217)
T ss_dssp TTSCEEEEEECCTTCCHH
T ss_pred ccCCcEEEEECCCCCCHH
Confidence 344577888999999995
No 419
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=20.46 E-value=31 Score=35.11 Aligned_cols=17 Identities=29% Similarity=0.345 Sum_probs=14.7
Q ss_pred cCCceeeeCCCCCcchH
Q 002378 36 NGGVSMLESPTGTGKTL 52 (929)
Q Consensus 36 ~~~~~~~esptgtgktl 52 (929)
.|..++||++.|+|||-
T Consensus 20 ~~~~i~~~G~~g~GKst 36 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTT 36 (223)
T ss_dssp CCEEEEEECSTTSSHHH
T ss_pred CCeEEEEECCCCCCHHH
Confidence 36788999999999983
No 420
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=20.31 E-value=27 Score=35.30 Aligned_cols=19 Identities=42% Similarity=0.742 Sum_probs=16.4
Q ss_pred HHcCCceeeeCCCCCcchH
Q 002378 34 LENGGVSMLESPTGTGKTL 52 (929)
Q Consensus 34 ~~~~~~~~~esptgtgktl 52 (929)
+..|+...+-+|.|+|||-
T Consensus 32 i~~Ge~~~iiG~NGsGKST 50 (214)
T 1sgw_A 32 IEKGNVVNFHGPNGIGKTT 50 (214)
T ss_dssp EETTCCEEEECCTTSSHHH
T ss_pred EcCCCEEEEECCCCCCHHH
Confidence 4578888999999999994
No 421
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=20.18 E-value=66 Score=38.66 Aligned_cols=39 Identities=15% Similarity=0.199 Sum_probs=27.9
Q ss_pred CCHHHHHHHHHHHHHHHcCCceeeeCCCCCcchHHHHHHHHHhHH
Q 002378 19 PYSIQTDFMKALYCSLENGGVSMLESPTGTGKTLSIICSALQWVV 63 (929)
Q Consensus 19 py~~Q~~~M~~v~~~~~~~~~~~~esptgtgktl~~l~~~l~~~~ 63 (929)
.-|.|++.... .....++.++-|||||-.|+.-....+.
T Consensus 12 Ln~~Q~~av~~------~~g~~lV~AgAGSGKT~vL~~ri~~ll~ 50 (724)
T 1pjr_A 12 LNKEQQEAVRT------TEGPLLIMAGAGSGKTRVLTHRIAYLMA 50 (724)
T ss_dssp SCHHHHHHHHC------CSSCEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhC------CCCCEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 55778876542 3578888999999999987765544433
No 422
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=20.04 E-value=30 Score=34.36 Aligned_cols=14 Identities=21% Similarity=0.131 Sum_probs=12.0
Q ss_pred ceeeeCCCCCcchH
Q 002378 39 VSMLESPTGTGKTL 52 (929)
Q Consensus 39 ~~~~esptgtgktl 52 (929)
.++|++|.|+|||-
T Consensus 2 ~I~l~G~~GsGKsT 15 (214)
T 1e4v_A 2 RIILLGAPVAGKGT 15 (214)
T ss_dssp EEEEEESTTSSHHH
T ss_pred EEEEECCCCCCHHH
Confidence 46899999999983
Done!