BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002379
(929 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|B Chain B, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|D Chain D, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3TAX|A Chain A, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|3TAX|C Chain C, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|4AY5|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY6|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4GYW|A Chain A, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYW|C Chain C, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYY|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GYY|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GZ3|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ3|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ5|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ6|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
Length = 723
Score = 37.7 bits (86), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 60/144 (41%), Gaps = 10/144 (6%)
Query: 740 CPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI--KHTRAHQGLARVYYLKNELK 797
CP+ +LNNL +I E G +++A Y AL++ + AH LA V + +L+
Sbjct: 5 CPT----HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQ 60
Query: 798 AAYDEMTKLLEKAQYSASAFEKRS----EYSDREMAKNDLNMATQLDPLRTYPYRYRAAV 853
A + + + A A+ E D + A A Q++P + A++
Sbjct: 61 EALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASI 120
Query: 854 LMDDQKEVEAVEELSKAIAFKPDL 877
D EA+ A+ KPD
Sbjct: 121 HKDSGNIPEAIASYRTALKLKPDF 144
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 35.4 bits (80), Expect = 0.14, Method: Composition-based stats.
Identities = 31/110 (28%), Positives = 43/110 (39%), Gaps = 10/110 (9%)
Query: 802 EMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEV 861
E K L A Y ++K EY + A +LDP +
Sbjct: 10 EAWKNLGNAYYKQGDYQKAIEYYQK---------ALELDPNNASAWYNLGNAYYKQGDYQ 60
Query: 862 EAVEELSKAIAFKPD-LQMLHLRAAFYESIGDLTSAIRDSQAALCLDPNH 910
+A+E KA+ P+ + + R Y GD AI D Q AL LDPN+
Sbjct: 61 KAIEYYQKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNN 110
>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha.
pdb|1W3B|B Chain B, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha
Length = 388
Score = 33.9 bits (76), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 64/163 (39%), Gaps = 7/163 (4%)
Query: 753 NLGSIYVECGKLDQAENCYINALDI--KHTRAHQGLARVYYLKNELKAAYDEMTKLLEKA 810
NLG++ E D+A Y+ AL + H H LA VYY + + A D + +E
Sbjct: 208 NLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ 267
Query: 811 QYSASAF----EKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEE 866
+ A+ E A++ N A +L P A + + EAV
Sbjct: 268 PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRL 327
Query: 867 LSKAIAFKPDLQMLHLR-AAFYESIGDLTSAIRDSQAALCLDP 908
KA+ P+ H A+ + G L A+ + A+ + P
Sbjct: 328 YRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP 370
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 33.5 bits (75), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 59/164 (35%), Gaps = 35/164 (21%)
Query: 749 QALNNLGSIYVECGKLDQAENCYINA--LDIKHTRAHQGLARVYYLKNELKAAYDEMTKL 806
+A NLG+ Y + G D+A Y A LD + A L YY + + YDE +
Sbjct: 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGD----YDEAIEY 57
Query: 807 LEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEE 866
+K A +LDP + EA+E
Sbjct: 58 YQK--------------------------ALELDPRSAEAWYNLGNAYYKQGDYDEAIEY 91
Query: 867 LSKAIAFKPDL--QMLHLRAAFYESIGDLTSAIRDSQAALCLDP 908
KA+ P +L A+Y+ GD AI Q AL LDP
Sbjct: 92 YQKALELDPRSAEAWYNLGNAYYKQ-GDYDEAIEYYQKALELDP 134
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 9/83 (10%)
Query: 730 VIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINA--LDIKHTRAHQGLA 787
I+ ++AL R +A NLG+ Y + G D+A Y A LD + A L
Sbjct: 20 AIEYYQKALELDP---RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLG 76
Query: 788 RVYYLKNELKAAYDEMTKLLEKA 810
YY + + YDE + +KA
Sbjct: 77 NAYYKQGD----YDEAIEYYQKA 95
>pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt
pdb|2VYI|B Chain B, Crystal Structure Of The Tpr Domain Of Human Sgt
Length = 131
Score = 32.7 bits (73), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
Query: 856 DDQKEVE----AVEELSKAIAFKPDLQMLHL-RAAFYESIGDLTSAIRDSQAALCLDP 908
++Q +VE AV KAI P + RAA Y +G+ A++D + A+C+DP
Sbjct: 20 NEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDP 77
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 30.0 bits (66), Expect = 6.2, Method: Composition-based stats.
Identities = 29/101 (28%), Positives = 43/101 (42%), Gaps = 6/101 (5%)
Query: 814 ASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAF 873
+A+ K+ +Y + A A +LDP + EA+E KA+
Sbjct: 16 GNAYYKQGDYDE---AIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72
Query: 874 KPD--LQMLHLRAAFYESIGDLTSAIRDSQAALCLDPNHME 912
P+ +L A+Y+ GD AI Q AL LDPN+ E
Sbjct: 73 DPNNAEAWYNLGNAYYKQ-GDYDEAIEYYQKALELDPNNAE 112
Score = 29.6 bits (65), Expect = 8.5, Method: Composition-based stats.
Identities = 30/103 (29%), Positives = 46/103 (44%), Gaps = 12/103 (11%)
Query: 748 GQALNNLGSIYVECGKLDQAENCYINA--LDIKHTRAHQGLARVYYLKNELKAAYDEMTK 805
+A NLG+ Y + G D+A Y A LD + A L YY + + A + K
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68
Query: 806 LLE------KAQYS-ASAFEKRSEYSDREMAKNDLNMATQLDP 841
LE +A Y+ +A+ K+ +Y + A A +LDP
Sbjct: 69 ALELDPNNAEAWYNLGNAYYKQGDYDE---AIEYYQKALELDP 108
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 30.0 bits (66), Expect = 6.6, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 862 EAVEELSKAIAFKPD--LQMLHLRAAFYESIGDLTSAIRDSQAALCLDPNHME 912
EA+E KA+ P+ +L A+Y+ GD AI Q AL LDPN+ E
Sbjct: 27 EAIEYYQKALELDPNNAEAWYNLGNAYYKQ-GDYDEAIEYYQKALELDPNNAE 78
>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
Length = 70
Score = 29.3 bits (64), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 6/64 (9%)
Query: 749 QALNNLGSIYVECGKLDQAENCYINA--LDIKHTRAHQGLARVYYLKNELKAAYDEMTKL 806
+A NLG+ Y + G D+A Y A LD + A L YY + + YDE +
Sbjct: 4 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGD----YDEAIEY 59
Query: 807 LEKA 810
+KA
Sbjct: 60 YQKA 63
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,169,385
Number of Sequences: 62578
Number of extensions: 903811
Number of successful extensions: 2205
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 2173
Number of HSP's gapped (non-prelim): 45
length of query: 929
length of database: 14,973,337
effective HSP length: 108
effective length of query: 821
effective length of database: 8,214,913
effective search space: 6744443573
effective search space used: 6744443573
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)