Query 002379
Match_columns 929
No_of_seqs 1240 out of 4325
Neff 9.2
Searched_HMMs 46136
Date Thu Mar 28 22:42:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002379.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002379hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4626 O-linked N-acetylgluco 100.0 6.2E-43 1.3E-47 373.2 34.2 434 422-920 51-499 (966)
2 KOG4626 O-linked N-acetylgluco 100.0 8.6E-40 1.9E-44 349.2 32.0 382 415-890 112-503 (966)
3 TIGR02917 PEP_TPR_lipo putativ 100.0 3.1E-33 6.7E-38 352.7 59.9 490 398-926 379-886 (899)
4 TIGR02917 PEP_TPR_lipo putativ 100.0 2E-32 4.3E-37 345.4 60.9 493 414-923 120-681 (899)
5 PRK11447 cellulose synthase su 100.0 2E-31 4.3E-36 339.2 57.3 485 387-910 32-704 (1157)
6 PRK11447 cellulose synthase su 100.0 3.4E-30 7.4E-35 327.9 58.5 468 396-905 161-739 (1157)
7 TIGR00990 3a0801s09 mitochondr 100.0 8.5E-30 1.8E-34 305.1 51.8 417 418-913 126-578 (615)
8 PRK09782 bacteriophage N4 rece 100.0 5.5E-27 1.2E-31 285.0 56.0 503 396-925 58-725 (987)
9 TIGR00990 3a0801s09 mitochondr 100.0 1.1E-27 2.4E-32 286.8 46.0 392 488-926 132-557 (615)
10 KOG2002 TPR-containing nuclear 100.0 4E-27 8.8E-32 266.3 47.4 472 427-924 136-659 (1018)
11 KOG2002 TPR-containing nuclear 100.0 5.1E-26 1.1E-30 257.4 47.6 456 434-925 251-764 (1018)
12 PRK09782 bacteriophage N4 rece 100.0 5E-25 1.1E-29 268.0 51.9 498 418-926 43-692 (987)
13 KOG0547 Translocase of outer m 100.0 6.1E-25 1.3E-29 231.1 39.9 424 417-920 113-580 (606)
14 PRK15174 Vi polysaccharide exp 100.0 2.6E-25 5.7E-30 265.4 42.0 328 519-910 46-385 (656)
15 PRK15174 Vi polysaccharide exp 100.0 5.9E-25 1.3E-29 262.4 43.4 316 498-878 59-386 (656)
16 PRK10049 pgaA outer membrane p 99.9 2E-24 4.4E-29 263.2 43.5 389 496-921 30-471 (765)
17 PRK10049 pgaA outer membrane p 99.9 8.8E-23 1.9E-27 249.0 45.3 394 503-923 4-439 (765)
18 PHA02790 Kelch-like protein; P 99.9 2.1E-26 4.4E-31 265.1 12.5 146 214-363 18-166 (480)
19 PHA02713 hypothetical protein; 99.9 1.3E-25 2.8E-30 261.8 15.2 152 206-363 13-167 (557)
20 KOG4441 Proteins containing BT 99.9 1.3E-25 2.7E-30 260.4 12.5 155 205-363 23-178 (571)
21 KOG0547 Translocase of outer m 99.9 1.5E-22 3.3E-27 213.2 33.2 390 490-926 122-552 (606)
22 KOG0548 Molecular co-chaperone 99.9 1E-21 2.2E-26 210.8 38.1 426 422-923 5-472 (539)
23 KOG4350 Uncharacterized conser 99.9 6.4E-25 1.4E-29 224.1 12.3 148 213-363 40-189 (620)
24 PHA03098 kelch-like protein; P 99.9 6E-24 1.3E-28 250.7 15.3 141 215-363 7-149 (534)
25 KOG1155 Anaphase-promoting com 99.9 9.3E-20 2E-24 191.4 42.3 345 513-926 162-556 (559)
26 KOG1126 DNA-binding cell divis 99.9 7.8E-22 1.7E-26 216.8 27.0 299 518-912 320-626 (638)
27 PRK14574 hmsH outer membrane p 99.9 3.2E-19 6.9E-24 213.3 50.6 446 419-917 34-524 (822)
28 KOG1155 Anaphase-promoting com 99.9 6E-20 1.3E-24 192.8 38.8 370 419-880 164-543 (559)
29 KOG0624 dsRNA-activated protei 99.9 5.9E-21 1.3E-25 192.6 29.1 210 489-707 44-256 (504)
30 KOG2003 TPR repeat-containing 99.9 2.8E-20 6E-25 193.4 34.7 268 642-920 421-703 (840)
31 KOG1173 Anaphase-promoting com 99.9 4.8E-20 1E-24 198.4 35.3 393 418-923 140-535 (611)
32 KOG1126 DNA-binding cell divis 99.9 6.7E-21 1.4E-25 209.5 26.4 286 499-878 337-625 (638)
33 PRK11788 tetratricopeptide rep 99.9 9.3E-20 2E-24 207.1 36.6 304 516-910 36-355 (389)
34 PRK14574 hmsH outer membrane p 99.9 8.5E-19 1.8E-23 209.7 44.3 415 482-921 33-494 (822)
35 KOG0495 HAT repeat protein [RN 99.9 1.2E-17 2.7E-22 181.4 48.0 439 468-925 366-865 (913)
36 KOG2076 RNA polymerase III tra 99.9 1.5E-17 3.1E-22 188.5 48.1 486 419-909 139-852 (895)
37 KOG0495 HAT repeat protein [RN 99.9 1.1E-16 2.3E-21 174.3 52.5 478 399-919 393-893 (913)
38 PRK11788 tetratricopeptide rep 99.9 2.3E-19 5.1E-24 203.8 33.8 275 589-921 36-326 (389)
39 KOG1174 Anaphase-promoting com 99.9 1.3E-17 2.9E-22 172.5 40.7 286 630-926 222-520 (564)
40 KOG4162 Predicted calmodulin-b 99.8 4.6E-17 9.9E-22 181.5 40.5 423 418-911 322-788 (799)
41 KOG0624 dsRNA-activated protei 99.8 1.2E-17 2.6E-22 168.9 32.3 358 418-877 37-426 (504)
42 PLN03077 Protein ECB2; Provisi 99.8 8.3E-17 1.8E-21 200.8 45.4 453 424-921 227-701 (857)
43 KOG0548 Molecular co-chaperone 99.8 7.6E-18 1.6E-22 181.3 29.5 386 489-926 8-441 (539)
44 PLN03081 pentatricopeptide (PP 99.8 3.2E-16 6.9E-21 190.9 46.8 441 423-906 91-557 (697)
45 PLN03077 Protein ECB2; Provisi 99.8 1.4E-15 2.9E-20 189.9 48.0 443 421-905 255-719 (857)
46 KOG2076 RNA polymerase III tra 99.8 1.4E-16 3E-21 180.6 34.0 324 555-907 146-513 (895)
47 TIGR00540 hemY_coli hemY prote 99.8 2.3E-16 4.9E-21 179.2 34.8 294 519-906 88-399 (409)
48 KOG1127 TPR repeat-containing 99.8 1.3E-16 2.8E-21 181.0 32.1 454 424-906 404-913 (1238)
49 PLN03081 pentatricopeptide (PP 99.8 1.3E-15 2.9E-20 185.5 42.3 382 499-922 141-539 (697)
50 KOG2003 TPR repeat-containing 99.8 8.2E-16 1.8E-20 160.4 31.0 398 418-891 275-708 (840)
51 KOG1173 Anaphase-promoting com 99.8 2.2E-16 4.8E-21 170.5 27.6 269 513-845 242-524 (611)
52 PLN03218 maturation of RBCL 1; 99.8 3.9E-14 8.6E-19 174.5 50.6 349 422-808 373-747 (1060)
53 KOG1127 TPR repeat-containing 99.8 6.1E-15 1.3E-19 167.7 39.5 405 497-926 508-982 (1238)
54 PRK10747 putative protoheme IX 99.8 3.5E-15 7.5E-20 168.6 37.0 299 518-907 87-391 (398)
55 PF13429 TPR_15: Tetratricopep 99.8 6.4E-18 1.4E-22 182.3 13.7 252 643-906 11-277 (280)
56 KOG2075 Topoisomerase TOP1-int 99.7 6.8E-18 1.5E-22 178.4 12.9 142 218-363 115-262 (521)
57 PLN03218 maturation of RBCL 1; 99.7 4.3E-14 9.3E-19 174.1 47.8 368 499-909 424-819 (1060)
58 PRK12370 invasion protein regu 99.7 3.6E-16 7.9E-21 184.1 28.7 244 498-808 278-534 (553)
59 PRK11189 lipoprotein NlpI; Pro 99.7 3.9E-16 8.4E-21 168.9 24.8 210 626-875 46-267 (296)
60 PRK12370 invasion protein regu 99.7 9.1E-16 2E-20 180.8 30.0 270 551-908 261-537 (553)
61 KOG4162 Predicted calmodulin-b 99.7 1.7E-14 3.7E-19 161.2 37.0 380 513-927 321-770 (799)
62 PRK11189 lipoprotein NlpI; Pro 99.7 9.8E-16 2.1E-20 165.7 26.8 228 654-924 40-284 (296)
63 KOG4591 Uncharacterized conser 99.7 1.2E-17 2.7E-22 155.2 8.7 141 214-361 63-207 (280)
64 KOG1174 Anaphase-promoting com 99.7 3.2E-14 6.8E-19 147.8 33.0 360 425-818 136-509 (564)
65 KOG1129 TPR repeat-containing 99.7 2.8E-16 6.1E-21 158.2 16.6 201 552-817 227-432 (478)
66 COG3063 PilF Tfp pilus assembl 99.7 6.1E-15 1.3E-19 143.1 23.1 206 640-915 35-245 (250)
67 KOG1129 TPR repeat-containing 99.7 6.9E-16 1.5E-20 155.4 17.0 242 519-821 227-470 (478)
68 KOG0550 Molecular chaperone (D 99.7 8.3E-16 1.8E-20 160.0 18.1 178 640-876 169-353 (486)
69 PF13429 TPR_15: Tetratricopep 99.7 1.4E-16 3E-21 172.0 12.7 258 519-872 12-276 (280)
70 TIGR00540 hemY_coli hemY prote 99.7 9.3E-14 2E-18 157.8 36.2 303 417-809 82-399 (409)
71 KOG1125 TPR repeat-containing 99.7 1.4E-15 3E-20 165.4 18.4 244 644-898 289-563 (579)
72 TIGR02521 type_IV_pilW type IV 99.7 1.5E-14 3.2E-19 151.0 25.9 201 638-908 29-234 (234)
73 PRK10747 putative protoheme IX 99.7 1.6E-13 3.4E-18 155.1 35.2 290 487-874 88-391 (398)
74 PF00651 BTB: BTB/POZ domain; 99.7 1.5E-16 3.3E-21 145.6 8.3 100 215-317 8-110 (111)
75 KOG1915 Cell cycle control pro 99.7 9.1E-12 2E-16 131.7 44.2 444 421-922 75-551 (677)
76 KOG1125 TPR repeat-containing 99.7 1.6E-14 3.6E-19 157.1 23.8 253 487-797 289-559 (579)
77 KOG0550 Molecular chaperone (D 99.6 1.4E-13 3E-18 143.6 28.6 375 412-903 42-440 (486)
78 KOG1156 N-terminal acetyltrans 99.6 5E-13 1.1E-17 146.9 33.7 375 515-919 7-447 (700)
79 TIGR02521 type_IV_pilW type IV 99.6 7.1E-14 1.5E-18 145.8 25.7 186 673-926 30-218 (234)
80 KOG1156 N-terminal acetyltrans 99.6 5.3E-12 1.2E-16 139.0 40.4 428 420-905 8-467 (700)
81 COG2956 Predicted N-acetylgluc 99.6 2.6E-12 5.6E-17 130.3 33.3 259 496-817 50-319 (389)
82 PLN02789 farnesyltranstransfer 99.6 1.6E-13 3.5E-18 148.0 25.7 241 638-918 35-314 (320)
83 cd05804 StaR_like StaR_like; a 99.6 6.5E-13 1.4E-17 148.9 31.8 314 511-907 2-337 (355)
84 COG3063 PilF Tfp pilus assembl 99.6 2.4E-13 5.1E-18 132.2 23.5 204 549-816 36-243 (250)
85 smart00225 BTB Broad-Complex, 99.6 2.6E-15 5.7E-20 131.4 9.3 89 220-311 2-90 (90)
86 KOG1840 Kinesin light chain [C 99.6 5.7E-13 1.2E-17 149.6 29.0 257 510-872 194-478 (508)
87 KOG0783 Uncharacterized conser 99.6 1.2E-15 2.5E-20 169.3 7.0 133 225-360 719-856 (1267)
88 PLN02789 farnesyltranstransfer 99.6 4.5E-13 9.8E-18 144.5 26.3 206 630-875 61-304 (320)
89 KOG4682 Uncharacterized conser 99.6 8.5E-15 1.8E-19 151.1 11.5 146 212-360 64-211 (488)
90 KOG1840 Kinesin light chain [C 99.6 2.1E-12 4.6E-17 145.0 31.0 238 636-905 195-478 (508)
91 COG2956 Predicted N-acetylgluc 99.6 2.8E-12 6E-17 130.1 27.8 244 644-923 39-295 (389)
92 KOG2376 Signal recognition par 99.6 1.7E-10 3.8E-15 125.9 43.3 429 423-917 16-498 (652)
93 KOG1915 Cell cycle control pro 99.5 4.4E-10 9.5E-15 119.2 40.3 385 499-912 91-506 (677)
94 COG3071 HemY Uncharacterized e 99.4 5.1E-10 1.1E-14 117.6 33.4 292 557-906 93-390 (400)
95 KOG3785 Uncharacterized conser 99.4 5.8E-10 1.3E-14 114.2 31.6 268 497-797 38-333 (557)
96 TIGR03302 OM_YfiO outer membra 99.4 1.2E-11 2.6E-16 129.9 19.5 201 634-909 27-235 (235)
97 KOG3785 Uncharacterized conser 99.4 3.7E-09 8.1E-14 108.4 35.0 434 399-909 39-493 (557)
98 cd05804 StaR_like StaR_like; a 99.4 2.4E-10 5.3E-15 128.1 29.4 285 499-810 24-337 (355)
99 TIGR03302 OM_YfiO outer membra 99.4 4.2E-11 9E-16 125.7 20.7 175 510-705 28-234 (235)
100 KOG2376 Signal recognition par 99.4 2.8E-09 6.1E-14 116.7 34.5 352 497-904 28-444 (652)
101 PRK15359 type III secretion sy 99.4 1.2E-11 2.5E-16 118.3 14.2 121 801-924 14-139 (144)
102 KOG1130 Predicted G-alpha GTPa 99.3 3.3E-11 7.2E-16 125.4 17.5 211 642-906 97-344 (639)
103 PF12569 NARP1: NMDA receptor- 99.3 9.7E-10 2.1E-14 125.4 30.6 268 639-906 3-334 (517)
104 KOG2047 mRNA splicing factor [ 99.3 7.1E-08 1.5E-12 106.5 42.7 412 502-922 89-597 (835)
105 PRK14720 transcript cleavage f 99.3 4.1E-10 9E-15 133.6 26.8 154 508-703 24-178 (906)
106 PRK10370 formate-dependent nit 99.3 2.4E-10 5.3E-15 115.3 19.0 159 755-922 23-189 (198)
107 PRK15359 type III secretion sy 99.3 1.1E-10 2.4E-15 111.6 15.0 55 630-684 82-136 (144)
108 PRK04841 transcriptional regul 99.3 1.4E-08 3.1E-13 128.6 38.6 366 518-911 344-765 (903)
109 KOG1130 Predicted G-alpha GTPa 99.3 5.7E-11 1.2E-15 123.7 13.4 266 423-812 21-307 (639)
110 PF12569 NARP1: NMDA receptor- 99.3 4.1E-08 8.9E-13 112.2 37.9 126 641-777 195-334 (517)
111 KOG2047 mRNA splicing factor [ 99.2 1.3E-06 2.8E-11 96.8 46.9 434 417-860 246-710 (835)
112 KOG0553 TPR repeat-containing 99.2 6E-11 1.3E-15 120.5 12.5 107 822-928 93-200 (304)
113 COG5010 TadD Flp pilus assembl 99.2 2E-09 4.3E-14 107.7 20.2 179 563-806 48-228 (257)
114 PRK10370 formate-dependent nit 99.2 4.7E-10 1E-14 113.3 16.1 115 626-780 59-176 (198)
115 PRK14720 transcript cleavage f 99.2 1.8E-09 3.9E-14 128.3 22.9 222 634-889 25-269 (906)
116 KOG3060 Uncharacterized conser 99.2 3.7E-09 8E-14 104.5 21.0 169 749-917 53-231 (289)
117 KOG4340 Uncharacterized conser 99.2 1.6E-08 3.4E-13 101.7 25.4 270 498-811 27-307 (459)
118 KOG1128 Uncharacterized conser 99.2 7.3E-10 1.6E-14 124.1 17.5 221 512-810 395-617 (777)
119 COG3071 HemY Uncharacterized e 99.2 1.7E-07 3.6E-12 99.0 33.5 304 417-809 82-390 (400)
120 KOG4340 Uncharacterized conser 99.1 6E-08 1.3E-12 97.6 28.1 387 430-881 21-451 (459)
121 PRK15179 Vi polysaccharide bio 99.1 4.4E-09 9.5E-14 124.5 23.9 143 630-812 76-220 (694)
122 PRK15179 Vi polysaccharide bio 99.1 4.4E-09 9.6E-14 124.5 23.6 141 573-777 77-217 (694)
123 PRK04841 transcriptional regul 99.1 1.1E-07 2.3E-12 120.6 37.9 381 418-877 340-764 (903)
124 TIGR02552 LcrH_SycD type III s 99.1 7.2E-10 1.6E-14 105.2 13.8 122 802-923 5-131 (135)
125 COG5010 TadD Flp pilus assembl 99.1 4.5E-09 9.8E-14 105.1 18.9 178 499-701 51-229 (257)
126 KOG1128 Uncharacterized conser 99.1 3.7E-09 8E-14 118.5 18.2 217 637-874 395-617 (777)
127 KOG3060 Uncharacterized conser 99.1 3E-08 6.5E-13 98.1 21.7 181 510-714 47-232 (289)
128 TIGR02552 LcrH_SycD type III s 99.0 4.3E-09 9.3E-14 99.9 14.1 115 569-707 4-118 (135)
129 KOG0553 TPR repeat-containing 99.0 4E-09 8.7E-14 107.4 12.4 111 784-894 85-200 (304)
130 PRK15363 pathogenicity island 99.0 8.5E-09 1.8E-13 96.7 13.1 99 822-920 47-146 (157)
131 PF04733 Coatomer_E: Coatomer 99.0 1.1E-08 2.4E-13 109.3 15.8 258 649-919 10-278 (290)
132 COG4783 Putative Zn-dependent 98.9 2.4E-07 5.3E-12 100.4 25.0 147 589-777 307-454 (484)
133 PRK15363 pathogenicity island 98.9 3E-08 6.6E-13 93.0 14.2 106 632-777 26-132 (157)
134 COG4783 Putative Zn-dependent 98.9 2.1E-07 4.5E-12 100.9 20.9 146 778-923 304-454 (484)
135 PLN03088 SGT1, suppressor of 98.9 2E-08 4.3E-13 111.3 13.7 103 823-925 15-118 (356)
136 PF04733 Coatomer_E: Coatomer 98.8 1E-07 2.2E-12 101.9 17.1 138 640-817 131-273 (290)
137 KOG1941 Acetylcholine receptor 98.8 2.1E-06 4.6E-11 89.0 24.1 244 517-810 8-276 (518)
138 KOG0511 Ankyrin repeat protein 98.8 1.6E-08 3.5E-13 104.2 8.8 147 220-369 295-448 (516)
139 TIGR02795 tol_pal_ybgF tol-pal 98.8 1.2E-07 2.7E-12 87.4 13.9 112 781-919 3-118 (119)
140 COG4785 NlpI Lipoprotein NlpI, 98.8 4.3E-07 9.3E-12 87.7 17.0 212 549-793 66-288 (297)
141 PF13525 YfiO: Outer membrane 98.8 6.4E-07 1.4E-11 91.2 19.7 177 418-694 4-198 (203)
142 COG4785 NlpI Lipoprotein NlpI, 98.8 1.9E-07 4.1E-12 90.1 14.5 197 638-875 63-268 (297)
143 PF13414 TPR_11: TPR repeat; P 98.7 3.7E-08 8.1E-13 81.1 8.3 67 639-705 2-69 (69)
144 PRK10866 outer membrane biogen 98.7 1.5E-06 3.2E-11 90.7 21.9 202 638-903 30-238 (243)
145 PF13414 TPR_11: TPR repeat; P 98.7 5.6E-08 1.2E-12 80.1 7.4 66 843-908 2-69 (69)
146 KOG1941 Acetylcholine receptor 98.7 1.4E-05 3E-10 83.1 26.1 312 423-870 10-357 (518)
147 PLN03088 SGT1, suppressor of 98.7 2.7E-07 5.8E-12 102.3 14.6 108 783-890 5-117 (356)
148 PRK10866 outer membrane biogen 98.7 2.5E-06 5.5E-11 89.0 20.8 174 486-700 35-238 (243)
149 PF13525 YfiO: Outer membrane 98.6 2.6E-06 5.7E-11 86.7 19.9 188 639-897 4-198 (203)
150 PF14938 SNAP: Soluble NSF att 98.6 3.5E-06 7.6E-11 90.6 20.9 174 680-912 41-231 (282)
151 CHL00033 ycf3 photosystem I as 98.6 1.5E-06 3.2E-11 85.9 15.0 77 640-716 35-115 (168)
152 PRK10153 DNA-binding transcrip 98.6 1.4E-06 2.9E-11 100.7 16.9 86 827-912 401-488 (517)
153 PF13432 TPR_16: Tetratricopep 98.5 2.8E-07 6E-12 74.9 7.9 64 644-707 1-64 (65)
154 KOG1070 rRNA processing protei 98.5 3E-05 6.5E-10 93.2 27.3 211 626-877 1444-1667(1710)
155 KOG0543 FKBP-type peptidyl-pro 98.5 8.3E-07 1.8E-11 94.6 12.9 128 785-927 213-341 (397)
156 PRK10153 DNA-binding transcrip 98.5 2.9E-06 6.3E-11 98.0 18.6 144 551-711 342-490 (517)
157 PRK10803 tol-pal system protei 98.5 1.8E-06 3.9E-11 90.6 15.4 115 781-922 143-262 (263)
158 PF14938 SNAP: Soluble NSF att 98.5 2.3E-06 5.1E-11 92.0 16.6 213 641-911 36-271 (282)
159 PRK02603 photosystem I assembl 98.5 2.6E-06 5.7E-11 84.4 15.6 70 638-707 33-105 (172)
160 PF13432 TPR_16: Tetratricopep 98.5 3.5E-07 7.7E-12 74.2 7.7 64 848-911 1-65 (65)
161 TIGR02795 tol_pal_ybgF tol-pal 98.5 1.5E-06 3.3E-11 80.0 13.0 105 548-707 2-109 (119)
162 KOG4234 TPR repeat-containing 98.5 1.3E-06 2.8E-11 83.4 11.9 118 783-925 98-216 (271)
163 COG4235 Cytochrome c biogenesi 98.5 3E-06 6.6E-11 87.5 15.7 122 797-918 139-268 (287)
164 KOG2471 TPR repeat-containing 98.5 4.1E-05 9E-10 82.5 24.5 361 499-904 224-682 (696)
165 KOG4648 Uncharacterized conser 98.5 1E-07 2.3E-12 97.6 4.9 232 643-922 100-346 (536)
166 PRK02603 photosystem I assembl 98.5 2.4E-06 5.2E-11 84.7 14.6 115 671-814 32-154 (172)
167 PRK11906 transcriptional regul 98.5 4.5E-06 9.7E-11 91.4 17.1 155 499-701 276-434 (458)
168 COG4235 Cytochrome c biogenesi 98.5 3.5E-06 7.6E-11 87.0 14.9 120 564-707 138-260 (287)
169 PF09976 TPR_21: Tetratricopep 98.5 8.3E-06 1.8E-10 78.2 16.7 124 647-807 18-145 (145)
170 PRK11906 transcriptional regul 98.4 6.2E-06 1.4E-10 90.3 17.1 139 552-707 259-405 (458)
171 cd00189 TPR Tetratricopeptide 98.4 2E-06 4.3E-11 74.7 11.2 98 591-706 3-100 (100)
172 PF09976 TPR_21: Tetratricopep 98.4 5.3E-06 1.2E-10 79.6 14.9 80 824-904 62-145 (145)
173 COG0457 NrfG FOG: TPR repeat [ 98.4 0.00026 5.6E-09 72.7 29.1 217 653-909 36-268 (291)
174 cd00189 TPR Tetratricopeptide 98.4 2.3E-06 5E-11 74.3 11.0 74 836-909 26-100 (100)
175 KOG3081 Vesicle coat complex C 98.4 7.1E-05 1.5E-09 75.3 22.2 259 649-919 17-284 (299)
176 PF12895 Apc3: Anaphase-promot 98.4 1.4E-06 3E-11 74.9 9.1 81 653-774 2-84 (84)
177 PF12895 Apc3: Anaphase-promot 98.4 5.3E-07 1.2E-11 77.5 6.2 80 823-903 2-84 (84)
178 KOG3617 WD40 and TPR repeat-co 98.4 0.0011 2.3E-08 76.0 33.5 220 515-774 912-1171(1416)
179 CHL00033 ycf3 photosystem I as 98.4 4.4E-06 9.6E-11 82.5 13.0 124 529-707 13-153 (168)
180 KOG2300 Uncharacterized conser 98.4 0.0074 1.6E-07 65.8 37.8 376 516-913 8-480 (629)
181 COG4700 Uncharacterized protei 98.4 4.4E-05 9.5E-10 72.4 18.3 127 750-904 91-220 (251)
182 COG3898 Uncharacterized membra 98.4 0.00086 1.9E-08 70.9 29.2 71 836-906 321-392 (531)
183 KOG3616 Selective LIM binding 98.3 0.00092 2E-08 75.4 30.9 242 641-900 766-1057(1636)
184 KOG0543 FKBP-type peptidyl-pro 98.3 4.9E-06 1.1E-10 88.8 12.8 144 518-703 211-355 (397)
185 PF13371 TPR_9: Tetratricopept 98.3 1.8E-06 4E-11 71.8 7.8 70 851-920 2-72 (73)
186 PF13512 TPR_18: Tetratricopep 98.3 1.2E-05 2.6E-10 74.4 13.5 114 779-919 9-141 (142)
187 KOG1070 rRNA processing protei 98.3 0.00012 2.6E-09 88.2 25.1 230 656-922 1440-1679(1710)
188 COG0457 NrfG FOG: TPR repeat [ 98.3 0.00081 1.7E-08 68.9 29.1 61 751-811 205-267 (291)
189 KOG3616 Selective LIM binding 98.3 0.004 8.8E-08 70.4 34.5 51 524-574 741-791 (1636)
190 KOG2053 Mitochondrial inherita 98.3 0.02 4.3E-07 67.2 41.0 405 496-908 24-538 (932)
191 PF14559 TPR_19: Tetratricopep 98.3 2.1E-06 4.6E-11 70.3 6.7 66 855-920 2-68 (68)
192 KOG3617 WD40 and TPR repeat-co 98.3 0.00047 1E-08 78.8 26.9 66 838-903 1073-1171(1416)
193 KOG4648 Uncharacterized conser 98.3 8E-07 1.7E-11 91.3 4.6 194 677-914 100-304 (536)
194 KOG0783 Uncharacterized conser 98.3 1.2E-06 2.7E-11 98.9 6.4 114 215-346 556-684 (1267)
195 PRK15331 chaperone protein Sic 98.2 1.5E-05 3.3E-10 75.3 12.6 106 632-777 29-134 (165)
196 PRK15331 chaperone protein Sic 98.2 1.6E-05 3.5E-10 75.1 12.7 105 782-887 39-147 (165)
197 PRK10803 tol-pal system protei 98.2 2.2E-05 4.7E-10 82.6 14.9 102 639-777 141-246 (263)
198 KOG1914 mRNA cleavage and poly 98.2 0.02 4.4E-07 63.5 39.7 378 505-906 10-464 (656)
199 KOG4234 TPR repeat-containing 98.2 4.8E-05 1E-09 72.9 14.4 107 417-546 93-199 (271)
200 KOG3081 Vesicle coat complex C 98.2 0.00097 2.1E-08 67.4 24.3 124 756-879 145-277 (299)
201 COG1729 Uncharacterized protei 98.2 3.9E-05 8.5E-10 78.4 14.7 113 783-922 144-260 (262)
202 PF12688 TPR_5: Tetratrico pep 98.1 5.2E-05 1.1E-09 69.1 13.4 99 641-776 2-103 (120)
203 COG4105 ComL DNA uptake lipopr 98.1 0.00029 6.3E-09 71.5 19.9 176 639-814 33-238 (254)
204 KOG2838 Uncharacterized conser 98.1 1.8E-06 3.9E-11 85.4 4.0 56 228-284 262-327 (401)
205 PF12688 TPR_5: Tetratrico pep 98.1 4.9E-05 1.1E-09 69.3 12.8 100 548-702 1-103 (120)
206 PF14559 TPR_19: Tetratricopep 98.1 9.4E-06 2E-10 66.4 7.5 63 650-712 1-64 (68)
207 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 3.6E-05 7.8E-10 85.1 14.3 72 630-701 224-295 (395)
208 COG4105 ComL DNA uptake lipopr 98.1 0.00029 6.4E-09 71.4 19.2 165 747-911 33-238 (254)
209 COG3898 Uncharacterized membra 98.1 0.0069 1.5E-07 64.3 28.9 186 499-707 102-296 (531)
210 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 6.1E-05 1.3E-09 83.3 14.9 116 754-870 175-294 (395)
211 PF13371 TPR_9: Tetratricopept 98.1 1.7E-05 3.6E-10 66.0 7.9 61 647-707 2-62 (73)
212 KOG4555 TPR repeat-containing 98.0 3.7E-05 8E-10 68.4 10.0 89 822-910 55-148 (175)
213 KOG2300 Uncharacterized conser 98.0 0.03 6.5E-07 61.3 33.6 166 724-912 336-523 (629)
214 KOG2053 Mitochondrial inherita 98.0 0.0088 1.9E-07 70.0 31.5 228 559-813 20-259 (932)
215 PF13512 TPR_18: Tetratricopep 98.0 0.00013 2.8E-09 67.6 13.7 84 514-600 9-96 (142)
216 PLN03098 LPA1 LOW PSII ACCUMUL 98.0 2.1E-05 4.5E-10 86.1 9.4 69 635-703 70-141 (453)
217 KOG2716 Polymerase delta-inter 98.0 3.4E-05 7.4E-10 77.3 10.1 97 220-319 7-106 (230)
218 KOG1987 Speckle-type POZ prote 98.0 4.5E-06 9.7E-11 90.8 4.3 130 226-359 109-243 (297)
219 PF10345 Cohesin_load: Cohesin 98.0 0.023 5.1E-07 68.1 35.7 441 401-905 40-605 (608)
220 PLN03098 LPA1 LOW PSII ACCUMUL 98.0 2.2E-05 4.8E-10 85.9 9.0 68 839-906 70-141 (453)
221 COG4700 Uncharacterized protei 98.0 0.00082 1.8E-08 64.0 17.6 62 639-701 159-220 (251)
222 COG1729 Uncharacterized protei 97.9 0.00014 3.1E-09 74.4 13.1 105 750-881 143-252 (262)
223 KOG4555 TPR repeat-containing 97.9 0.00035 7.7E-09 62.3 12.9 106 643-784 46-151 (175)
224 PF13424 TPR_12: Tetratricopep 97.9 5.1E-05 1.1E-09 64.0 7.4 73 671-777 2-75 (78)
225 KOG1585 Protein required for f 97.8 0.002 4.4E-08 64.1 18.8 197 555-804 38-251 (308)
226 PF13424 TPR_12: Tetratricopep 97.8 3.2E-05 7E-10 65.2 5.2 67 638-704 3-76 (78)
227 PF02214 BTB_2: BTB/POZ domain 97.8 3.6E-05 7.8E-10 67.6 5.3 88 220-310 1-94 (94)
228 KOG1586 Protein required for f 97.8 0.00092 2E-08 66.0 15.0 162 753-915 39-233 (288)
229 KOG2796 Uncharacterized conser 97.7 0.014 3.1E-07 58.8 22.3 219 640-877 69-319 (366)
230 PF06552 TOM20_plant: Plant sp 97.7 0.00022 4.7E-09 68.2 9.3 85 796-880 7-116 (186)
231 KOG2471 TPR repeat-containing 97.7 0.0043 9.3E-08 67.5 19.9 78 641-718 284-380 (696)
232 KOG3473 RNA polymerase II tran 97.7 0.00022 4.8E-09 59.3 7.8 81 220-303 19-112 (112)
233 PF04184 ST7: ST7 protein; In 97.6 0.0058 1.3E-07 67.4 20.4 239 648-919 176-427 (539)
234 PF06552 TOM20_plant: Plant sp 97.6 0.00022 4.8E-09 68.1 8.2 94 827-920 8-123 (186)
235 KOG4507 Uncharacterized conser 97.5 0.014 3.1E-07 64.9 21.4 103 823-925 620-724 (886)
236 KOG0376 Serine-threonine phosp 97.5 0.0002 4.3E-09 78.3 6.5 99 824-922 18-117 (476)
237 PF13431 TPR_17: Tetratricopep 97.4 0.00014 3.1E-09 49.9 2.9 33 503-535 1-33 (34)
238 KOG2796 Uncharacterized conser 97.4 0.0089 1.9E-07 60.2 16.5 139 551-707 180-319 (366)
239 PF13281 DUF4071: Domain of un 97.4 0.016 3.5E-07 63.3 19.8 170 748-918 141-346 (374)
240 PF13428 TPR_14: Tetratricopep 97.4 0.00039 8.5E-09 51.1 5.2 42 641-682 2-43 (44)
241 KOG1585 Protein required for f 97.4 0.01 2.2E-07 59.3 16.3 163 640-807 31-217 (308)
242 KOG0545 Aryl-hydrocarbon recep 97.3 0.0016 3.6E-08 64.6 10.7 120 419-582 178-298 (329)
243 PF13428 TPR_14: Tetratricopep 97.3 0.00057 1.2E-08 50.3 5.2 40 880-919 4-43 (44)
244 KOG1586 Protein required for f 97.3 0.18 4E-06 50.3 23.6 178 642-877 36-228 (288)
245 KOG2838 Uncharacterized conser 97.3 0.00019 4.1E-09 71.5 3.3 63 220-284 133-197 (401)
246 KOG2610 Uncharacterized conser 97.3 0.018 3.9E-07 60.0 17.3 152 753-904 108-274 (491)
247 PF10345 Cohesin_load: Cohesin 97.2 0.79 1.7E-05 55.1 34.6 84 496-580 36-131 (608)
248 PF10300 DUF3808: Protein of u 97.2 0.099 2.1E-06 60.3 25.3 155 752-906 192-376 (468)
249 PF13431 TPR_17: Tetratricopep 97.2 0.00032 6.9E-09 48.2 3.0 32 663-694 2-33 (34)
250 KOG0985 Vesicle coat protein c 97.2 0.91 2E-05 54.4 36.6 230 513-769 1102-1375(1666)
251 KOG2610 Uncharacterized conser 97.2 0.028 6E-07 58.7 17.6 125 553-701 108-236 (491)
252 COG2976 Uncharacterized protei 97.2 0.017 3.7E-07 56.0 15.1 100 822-921 101-203 (207)
253 PF05843 Suf: Suppressor of fo 97.2 0.0037 8E-08 67.0 12.1 91 827-917 53-147 (280)
254 PF07079 DUF1347: Protein of u 97.1 0.58 1.3E-05 51.3 41.9 60 844-903 460-521 (549)
255 KOG0545 Aryl-hydrocarbon recep 97.1 0.0061 1.3E-07 60.7 12.1 72 842-913 228-300 (329)
256 KOG1550 Extracellular protein 97.1 0.063 1.4E-06 63.4 23.0 261 637-910 241-542 (552)
257 PF00515 TPR_1: Tetratricopept 97.1 0.00076 1.7E-08 46.3 4.1 34 419-452 1-34 (34)
258 PF02259 FAT: FAT domain; Int 97.1 0.22 4.9E-06 55.4 26.4 157 748-909 146-341 (352)
259 KOG4642 Chaperone-dependent E3 97.1 0.0027 5.9E-08 63.0 9.1 81 825-905 25-106 (284)
260 KOG0530 Protein farnesyltransf 97.0 0.35 7.6E-06 49.2 23.5 216 630-917 67-309 (318)
261 KOG0551 Hsp90 co-chaperone CNS 97.0 0.0024 5.2E-08 66.4 8.5 103 783-911 84-187 (390)
262 PF05843 Suf: Suppressor of fo 97.0 0.029 6.2E-07 60.2 17.4 136 642-817 3-144 (280)
263 PF00515 TPR_1: Tetratricopept 97.0 0.0013 2.7E-08 45.2 4.6 32 675-706 2-33 (34)
264 PF07719 TPR_2: Tetratricopept 97.0 0.0013 2.8E-08 45.1 4.5 34 419-452 1-34 (34)
265 KOG0376 Serine-threonine phosp 97.0 0.001 2.2E-08 72.9 5.6 97 785-881 9-109 (476)
266 KOG0985 Vesicle coat protein c 97.0 1.5 3.2E-05 52.7 35.1 230 637-902 1101-1337(1666)
267 PF04184 ST7: ST7 protein; In 97.0 0.026 5.5E-07 62.5 16.1 189 681-917 175-386 (539)
268 KOG4642 Chaperone-dependent E3 96.9 0.003 6.6E-08 62.7 7.6 79 626-704 30-108 (284)
269 PF07719 TPR_2: Tetratricopept 96.9 0.002 4.4E-08 44.1 4.6 32 675-706 2-33 (34)
270 PF14853 Fis1_TPR_C: Fis1 C-te 96.9 0.0039 8.4E-08 47.4 6.3 48 879-926 3-50 (53)
271 KOG0551 Hsp90 co-chaperone CNS 96.8 0.014 3.1E-07 60.9 12.2 107 415-545 77-183 (390)
272 KOG1550 Extracellular protein 96.8 0.5 1.1E-05 55.9 26.9 172 499-702 230-425 (552)
273 KOG1308 Hsp70-interacting prot 96.8 0.00085 1.9E-08 70.1 3.0 86 823-908 127-213 (377)
274 KOG1914 mRNA cleavage and poly 96.8 1.4 3E-05 49.5 36.7 394 499-908 37-503 (656)
275 COG2909 MalT ATP-dependent tra 96.8 1.3 2.8E-05 53.0 28.6 293 512-836 344-685 (894)
276 PF10300 DUF3808: Protein of u 96.7 0.4 8.7E-06 55.4 24.6 120 654-809 247-376 (468)
277 PF13281 DUF4071: Domain of un 96.7 0.081 1.7E-06 57.9 17.6 190 639-878 140-339 (374)
278 KOG1258 mRNA processing protei 96.7 1.4 3.1E-05 50.3 27.6 104 822-925 309-414 (577)
279 KOG3364 Membrane protein invol 96.7 0.021 4.6E-07 51.8 10.7 84 843-926 31-120 (149)
280 KOG0530 Protein farnesyltransf 96.6 0.99 2.1E-05 46.1 23.1 220 433-684 40-269 (318)
281 KOG1258 mRNA processing protei 96.6 1.9 4.2E-05 49.3 33.5 176 749-924 298-488 (577)
282 PF11822 DUF3342: Domain of un 96.6 0.0038 8.2E-08 65.6 6.0 114 227-342 14-137 (317)
283 COG3118 Thioredoxin domain-con 96.5 0.11 2.3E-06 54.1 15.7 158 518-699 137-297 (304)
284 KOG1308 Hsp70-interacting prot 96.5 0.0049 1.1E-07 64.6 6.1 98 425-550 120-217 (377)
285 KOG0890 Protein kinase of the 96.5 3 6.6E-05 55.0 31.4 104 748-851 1670-1796(2382)
286 smart00512 Skp1 Found in Skp1 96.4 0.012 2.7E-07 52.5 7.8 81 220-303 4-104 (104)
287 COG0790 FOG: TPR repeat, SEL1 96.4 0.55 1.2E-05 50.8 22.1 176 733-912 56-272 (292)
288 COG2909 MalT ATP-dependent tra 96.4 3.4 7.3E-05 49.6 28.9 211 482-704 414-648 (894)
289 PF08631 SPO22: Meiosis protei 96.4 1.7 3.8E-05 46.5 25.4 163 526-703 4-186 (278)
290 COG3118 Thioredoxin domain-con 96.3 0.12 2.6E-06 53.7 15.2 125 422-546 137-267 (304)
291 PF13181 TPR_8: Tetratricopept 96.2 0.0064 1.4E-07 41.6 3.7 33 419-451 1-33 (34)
292 PRK10941 hypothetical protein; 96.1 0.037 8E-07 58.3 10.6 82 846-927 183-265 (269)
293 COG2976 Uncharacterized protei 96.1 0.11 2.3E-06 50.7 12.4 65 518-582 129-193 (207)
294 PF07707 BACK: BTB And C-termi 96.1 0.0069 1.5E-07 54.0 4.2 40 324-363 1-40 (103)
295 KOG2041 WD40 repeat protein [G 96.0 1.7 3.6E-05 50.1 22.9 233 630-903 683-936 (1189)
296 PF13181 TPR_8: Tetratricopept 96.0 0.013 2.9E-07 40.0 4.4 32 675-706 2-33 (34)
297 KOG0890 Protein kinase of the 96.0 4.1 9E-05 53.8 28.9 362 520-918 1388-1796(2382)
298 KOG1665 AFH1-interacting prote 95.9 0.025 5.4E-07 55.2 7.4 90 220-312 11-105 (302)
299 PF02259 FAT: FAT domain; Int 95.9 2.4 5.2E-05 47.1 24.9 171 511-706 142-341 (352)
300 KOG2714 SETA binding protein S 95.9 0.03 6.5E-07 60.4 8.5 85 220-308 13-102 (465)
301 COG0790 FOG: TPR repeat, SEL1 95.9 1.5 3.2E-05 47.4 22.3 123 750-877 111-270 (292)
302 PF08424 NRDE-2: NRDE-2, neces 95.7 0.53 1.1E-05 51.5 17.8 150 627-777 6-183 (321)
303 PF03704 BTAD: Bacterial trans 95.7 0.16 3.5E-06 48.5 12.1 62 641-702 63-124 (146)
304 KOG1724 SCF ubiquitin ligase, 95.6 0.063 1.4E-06 51.4 8.7 99 225-327 13-138 (162)
305 PF13176 TPR_7: Tetratricopept 95.4 0.023 4.9E-07 39.6 3.7 28 421-448 1-28 (36)
306 KOG4507 Uncharacterized conser 95.3 4.5 9.8E-05 45.9 22.6 96 785-880 611-712 (886)
307 KOG3824 Huntingtin interacting 95.0 0.07 1.5E-06 55.0 7.4 67 853-919 125-192 (472)
308 PF13176 TPR_7: Tetratricopept 95.0 0.036 7.8E-07 38.5 3.8 30 676-705 1-30 (36)
309 PF04910 Tcf25: Transcriptiona 95.0 1.3 2.8E-05 49.2 17.9 148 630-815 30-228 (360)
310 PF08631 SPO22: Meiosis protei 94.9 6.4 0.00014 42.2 23.8 227 651-904 4-273 (278)
311 PF03704 BTAD: Bacterial trans 94.9 1.1 2.3E-05 42.8 15.2 57 519-575 66-123 (146)
312 PF13174 TPR_6: Tetratricopept 94.9 0.05 1.1E-06 36.6 4.2 33 781-813 1-33 (33)
313 PF03931 Skp1_POZ: Skp1 family 94.9 0.14 3.1E-06 40.7 7.4 56 220-280 3-59 (62)
314 PRK13184 pknD serine/threonine 94.8 15 0.00032 45.9 28.0 325 555-904 482-867 (932)
315 KOG1464 COP9 signalosome, subu 94.8 1.5 3.2E-05 44.8 15.9 223 497-729 43-294 (440)
316 PF13174 TPR_6: Tetratricopept 94.8 0.042 9E-07 37.1 3.6 31 846-876 2-32 (33)
317 smart00875 BACK BTB And C-term 94.7 0.028 6E-07 49.7 3.4 40 324-363 1-40 (101)
318 PF09986 DUF2225: Uncharacteri 94.5 0.64 1.4E-05 47.4 13.1 95 653-777 90-194 (214)
319 PF04910 Tcf25: Transcriptiona 94.5 1.5 3.2E-05 48.7 17.0 94 507-605 32-156 (360)
320 KOG3783 Uncharacterized conser 94.4 5.5 0.00012 45.2 20.6 81 498-578 250-333 (546)
321 PF14853 Fis1_TPR_C: Fis1 C-te 94.3 0.17 3.8E-06 38.5 6.2 34 549-582 2-35 (53)
322 COG4649 Uncharacterized protei 94.0 1 2.2E-05 43.1 11.8 31 842-872 165-195 (221)
323 PRK15180 Vi polysaccharide bio 93.9 4.4 9.5E-05 44.8 18.2 38 890-927 711-748 (831)
324 PF09613 HrpB1_HrpK: Bacterial 93.9 1.9 4.1E-05 41.2 13.7 80 642-721 12-92 (160)
325 KOG3824 Huntingtin interacting 93.8 0.17 3.8E-06 52.3 7.1 74 643-716 119-193 (472)
326 PF14561 TPR_20: Tetratricopep 93.3 0.66 1.4E-05 40.0 9.0 72 626-697 8-81 (90)
327 COG5201 SKP1 SCF ubiquitin lig 93.3 0.83 1.8E-05 40.7 9.4 101 220-325 4-131 (158)
328 PF12968 DUF3856: Domain of Un 93.3 1.4 3.1E-05 39.3 10.7 63 844-906 55-129 (144)
329 COG5107 RNA14 Pre-mRNA 3'-end 93.2 17 0.00036 40.4 34.0 380 503-906 30-495 (660)
330 PF14561 TPR_20: Tetratricopep 93.2 0.93 2E-05 39.1 9.6 48 499-546 6-53 (90)
331 TIGR02561 HrpB1_HrpK type III 93.1 2.5 5.5E-05 39.6 12.8 105 645-775 15-120 (153)
332 PF04781 DUF627: Protein of un 93.0 0.51 1.1E-05 41.8 7.8 29 787-815 3-31 (111)
333 smart00028 TPR Tetratricopepti 93.0 0.16 3.4E-06 33.2 3.9 30 846-875 3-32 (34)
334 KOG1464 COP9 signalosome, subu 93.0 5.4 0.00012 40.9 15.8 216 527-762 39-286 (440)
335 PF07079 DUF1347: Protein of u 92.8 19 0.00041 40.1 34.1 143 518-669 9-157 (549)
336 smart00028 TPR Tetratricopepti 92.5 0.17 3.6E-06 33.1 3.5 30 676-705 3-32 (34)
337 KOG2041 WD40 repeat protein [G 92.4 27 0.00058 40.9 31.5 31 669-699 847-877 (1189)
338 PF09986 DUF2225: Uncharacteri 92.3 1.3 2.9E-05 45.1 11.1 92 762-876 91-197 (214)
339 KOG2396 HAT (Half-A-TPR) repea 92.0 1.6 3.4E-05 48.7 11.7 89 831-919 92-182 (568)
340 PRK10941 hypothetical protein; 92.0 1.2 2.6E-05 47.1 10.6 66 642-707 183-248 (269)
341 PF08424 NRDE-2: NRDE-2, neces 91.9 9.8 0.00021 41.7 18.2 82 501-582 5-99 (321)
342 PF12968 DUF3856: Domain of Un 91.7 4.1 8.8E-05 36.5 11.6 101 522-669 16-129 (144)
343 COG5107 RNA14 Pre-mRNA 3'-end 91.7 25 0.00055 39.0 34.8 280 407-702 30-361 (660)
344 KOG1778 CREB binding protein/P 91.7 0.078 1.7E-06 56.6 1.3 141 220-363 29-170 (319)
345 PF13374 TPR_10: Tetratricopep 91.4 0.33 7.1E-06 34.6 4.1 30 419-448 2-31 (42)
346 PF09613 HrpB1_HrpK: Bacterial 91.0 4.9 0.00011 38.5 12.5 99 823-923 23-122 (160)
347 PF01466 Skp1: Skp1 family, di 90.9 0.6 1.3E-05 39.0 5.7 52 286-337 11-64 (78)
348 KOG0511 Ankyrin repeat protein 90.8 0.29 6.4E-06 51.9 4.5 85 220-309 152-237 (516)
349 PF10602 RPN7: 26S proteasome 90.7 5 0.00011 39.6 12.9 118 733-874 18-143 (177)
350 COG2912 Uncharacterized conser 90.6 1.3 2.9E-05 46.0 8.9 76 849-924 186-262 (269)
351 KOG3364 Membrane protein invol 90.5 2.2 4.8E-05 39.1 9.1 68 515-582 32-105 (149)
352 PF04781 DUF627: Protein of un 90.5 2.6 5.6E-05 37.5 9.3 45 659-703 63-107 (111)
353 COG4976 Predicted methyltransf 90.3 0.84 1.8E-05 45.6 6.9 59 649-707 4-62 (287)
354 KOG0529 Protein geranylgeranyl 89.9 12 0.00026 41.2 15.7 99 826-924 91-196 (421)
355 KOG2396 HAT (Half-A-TPR) repea 89.9 39 0.00085 38.2 37.7 85 841-925 457-544 (568)
356 COG4649 Uncharacterized protei 89.7 20 0.00044 34.6 15.8 61 645-705 63-125 (221)
357 COG4976 Predicted methyltransf 89.5 0.76 1.6E-05 45.9 5.8 57 822-878 7-63 (287)
358 KOG1463 26S proteasome regulat 89.2 35 0.00075 36.6 22.3 265 644-909 8-319 (411)
359 PF11207 DUF2989: Protein of u 88.7 13 0.00029 36.9 13.9 82 814-897 111-198 (203)
360 PF13374 TPR_10: Tetratricopep 88.3 0.96 2.1E-05 32.1 4.5 30 675-704 3-32 (42)
361 COG3914 Spy Predicted O-linked 87.9 8.4 0.00018 44.2 13.3 118 799-916 50-181 (620)
362 PF10602 RPN7: 26S proteasome 87.7 4.4 9.5E-05 40.0 10.1 96 516-611 37-136 (177)
363 PF11207 DUF2989: Protein of u 87.6 23 0.00049 35.4 14.6 40 528-567 153-197 (203)
364 KOG1538 Uncharacterized conser 87.6 26 0.00056 40.6 16.7 23 678-700 636-658 (1081)
365 COG5191 Uncharacterized conser 87.5 1.4 3.1E-05 45.9 6.5 90 832-921 95-186 (435)
366 KOG2422 Uncharacterized conser 87.4 26 0.00056 40.2 16.5 148 762-909 252-451 (665)
367 COG4941 Predicted RNA polymera 87.1 11 0.00024 40.1 12.7 94 830-925 316-413 (415)
368 PF12862 Apc5: Anaphase-promot 86.6 3.3 7.1E-05 36.0 7.6 59 649-707 7-74 (94)
369 KOG1310 WD40 repeat protein [G 85.8 2.5 5.4E-05 47.3 7.7 88 791-878 385-479 (758)
370 KOG2715 Uncharacterized conser 85.6 6.4 0.00014 37.1 9.0 100 216-318 18-122 (210)
371 TIGR02561 HrpB1_HrpK type III 85.5 4.7 0.0001 37.9 8.2 72 823-894 23-95 (153)
372 PF10516 SHNi-TPR: SHNi-TPR; 85.4 1.1 2.3E-05 31.5 3.1 29 420-448 2-30 (38)
373 PRK13184 pknD serine/threonine 85.3 1.1E+02 0.0025 38.4 31.0 87 496-582 490-586 (932)
374 KOG1538 Uncharacterized conser 84.6 88 0.0019 36.5 19.4 99 639-775 746-844 (1081)
375 COG2912 Uncharacterized conser 83.1 4.4 9.5E-05 42.2 7.7 67 594-678 187-253 (269)
376 KOG3807 Predicted membrane pro 82.7 72 0.0016 34.0 17.2 126 636-779 180-306 (556)
377 PRK15180 Vi polysaccharide bio 82.5 6.2 0.00013 43.7 8.8 158 526-707 300-461 (831)
378 COG5159 RPN6 26S proteasome re 82.2 70 0.0015 33.5 21.5 264 644-909 7-317 (421)
379 KOG4814 Uncharacterized conser 81.9 1.1E+02 0.0024 35.8 21.4 67 850-916 360-433 (872)
380 PF10579 Rapsyn_N: Rapsyn N-te 81.6 9.4 0.0002 31.6 7.5 61 643-703 9-72 (80)
381 PF04053 Coatomer_WDAD: Coatom 81.6 43 0.00094 38.3 15.8 128 525-700 271-399 (443)
382 PRK11619 lytic murein transgly 81.2 1.4E+02 0.0029 36.2 40.4 134 760-903 324-465 (644)
383 KOG1310 WD40 repeat protein [G 81.1 4 8.7E-05 45.8 6.9 89 755-843 381-478 (758)
384 KOG2581 26S proteasome regulat 81.1 56 0.0012 36.0 15.1 133 523-673 134-280 (493)
385 PF04053 Coatomer_WDAD: Coatom 81.0 20 0.00043 41.1 12.8 100 758-870 271-373 (443)
386 PF07721 TPR_4: Tetratricopept 80.8 2.2 4.7E-05 27.0 3.0 23 676-698 3-25 (26)
387 PF10516 SHNi-TPR: SHNi-TPR; 80.3 3 6.5E-05 29.3 3.7 29 845-873 2-30 (38)
388 KOG1463 26S proteasome regulat 80.1 92 0.002 33.6 20.4 165 644-841 132-318 (411)
389 PRK11619 lytic murein transgly 79.7 1.5E+02 0.0033 35.9 34.0 309 517-871 35-373 (644)
390 KOG3807 Predicted membrane pro 79.4 93 0.002 33.3 20.0 52 616-669 194-245 (556)
391 KOG0546 HSP90 co-chaperone CPR 79.1 2.1 4.6E-05 45.8 3.9 84 843-926 274-358 (372)
392 PF12862 Apc5: Anaphase-promot 78.9 5 0.00011 34.9 5.7 56 758-813 8-74 (94)
393 PF07721 TPR_4: Tetratricopept 78.8 3.1 6.6E-05 26.3 3.2 23 846-868 3-25 (26)
394 KOG4814 Uncharacterized conser 78.2 1.5E+02 0.0032 34.9 24.8 99 783-905 357-456 (872)
395 PF10579 Rapsyn_N: Rapsyn N-te 77.9 14 0.00031 30.6 7.4 56 850-905 12-71 (80)
396 KOG3783 Uncharacterized conser 77.2 1.5E+02 0.0032 34.3 26.4 74 630-705 257-334 (546)
397 COG3629 DnrI DNA-binding trans 77.0 21 0.00046 37.7 10.6 64 640-703 153-216 (280)
398 KOG1839 Uncharacterized protei 76.5 37 0.00079 43.0 13.8 164 641-808 933-1127(1236)
399 KOG3840 Uncharaterized conserv 76.4 5.1 0.00011 41.5 5.6 83 220-303 98-184 (438)
400 COG5191 Uncharacterized conser 75.3 4.6 0.0001 42.3 5.0 78 630-707 97-175 (435)
401 PF07720 TPR_3: Tetratricopept 74.6 8.4 0.00018 26.7 4.6 31 675-705 2-34 (36)
402 COG3914 Spy Predicted O-linked 74.4 96 0.0021 36.0 15.3 126 534-683 50-185 (620)
403 PF07720 TPR_3: Tetratricopept 73.7 8.2 0.00018 26.8 4.4 21 846-866 3-23 (36)
404 KOG1839 Uncharacterized protei 73.3 35 0.00077 43.2 12.6 168 518-703 935-1128(1236)
405 smart00386 HAT HAT (Half-A-TPR 73.1 7.1 0.00015 25.5 4.1 31 891-921 1-31 (33)
406 KOG2063 Vacuolar assembly/sort 72.0 1.2E+02 0.0026 37.6 16.5 28 642-669 506-533 (877)
407 TIGR03504 FimV_Cterm FimV C-te 71.1 13 0.00028 27.1 5.1 23 849-871 4-26 (44)
408 KOG0687 26S proteasome regulat 70.4 47 0.001 35.5 10.9 85 399-483 81-176 (393)
409 KOG0529 Protein geranylgeranyl 70.2 1.2E+02 0.0025 33.8 14.2 168 499-686 47-241 (421)
410 PF04190 DUF410: Protein of un 69.6 1.4E+02 0.0031 31.4 14.9 65 842-906 88-170 (260)
411 KOG0276 Vesicle coat complex C 69.3 38 0.00082 39.1 10.6 27 751-777 669-695 (794)
412 COG3629 DnrI DNA-binding trans 68.0 21 0.00045 37.8 8.0 61 845-905 154-215 (280)
413 COG4455 ImpE Protein of avirul 66.4 23 0.00049 35.6 7.3 54 824-877 15-68 (273)
414 KOG2723 Uncharacterized conser 66.1 19 0.00041 36.5 6.9 97 216-316 6-108 (221)
415 PF10373 EST1_DNA_bind: Est1 D 65.5 20 0.00044 38.1 7.8 61 659-719 1-62 (278)
416 KOG0128 RNA-binding protein SA 64.3 3.4E+02 0.0073 33.2 24.7 280 626-905 99-410 (881)
417 PF15015 NYD-SP12_N: Spermatog 64.1 21 0.00045 39.3 7.1 56 645-700 233-288 (569)
418 COG3014 Uncharacterized protei 63.2 1.7E+02 0.0038 31.6 13.3 174 629-821 44-254 (449)
419 KOG2581 26S proteasome regulat 62.6 2.3E+02 0.0049 31.6 14.4 23 784-806 213-235 (493)
420 PF00244 14-3-3: 14-3-3 protei 61.8 2E+02 0.0044 29.8 15.0 63 518-580 4-69 (236)
421 PF04840 Vps16_C: Vps16, C-ter 61.2 2.5E+02 0.0054 30.6 23.1 48 844-899 237-284 (319)
422 PF12739 TRAPPC-Trs85: ER-Golg 60.6 3E+02 0.0065 31.3 17.1 27 751-777 373-399 (414)
423 KOG0546 HSP90 co-chaperone CPR 59.7 23 0.0005 38.3 6.4 54 630-683 299-352 (372)
424 PF10373 EST1_DNA_bind: Est1 D 59.5 34 0.00074 36.3 8.2 61 500-560 1-62 (278)
425 PF14863 Alkyl_sulf_dimr: Alky 59.0 50 0.0011 31.1 8.0 54 873-926 66-119 (141)
426 KOG0686 COP9 signalosome, subu 59.0 1.1E+02 0.0025 33.8 11.5 29 419-447 150-178 (466)
427 PF11817 Foie-gras_1: Foie gra 59.0 1.4E+02 0.003 31.2 12.4 59 549-607 179-237 (247)
428 COG3947 Response regulator con 58.9 33 0.00072 36.0 7.2 61 642-702 281-341 (361)
429 KOG4014 Uncharacterized conser 58.9 1.9E+02 0.0041 28.5 14.5 66 637-703 31-102 (248)
430 smart00299 CLH Clathrin heavy 58.3 1.6E+02 0.0034 27.4 13.2 48 650-698 17-64 (140)
431 PF12854 PPR_1: PPR repeat 57.6 23 0.0005 24.0 4.1 28 875-902 5-32 (34)
432 PF15015 NYD-SP12_N: Spermatog 57.1 98 0.0021 34.3 10.6 74 647-720 183-275 (569)
433 TIGR03504 FimV_Cterm FimV C-te 57.0 21 0.00045 26.1 4.0 29 882-911 4-32 (44)
434 PF00651 BTB: BTB/POZ domain; 56.7 14 0.00029 32.9 3.8 30 321-350 81-110 (111)
435 cd02682 MIT_AAA_Arch MIT: doma 56.5 60 0.0013 26.8 7.0 31 418-448 5-35 (75)
436 COG3947 Response regulator con 56.1 38 0.00082 35.6 7.1 56 848-903 283-339 (361)
437 KOG0128 RNA-binding protein SA 55.4 4.7E+02 0.01 32.0 35.5 205 499-718 168-392 (881)
438 smart00386 HAT HAT (Half-A-TPR 54.4 25 0.00054 22.7 4.0 29 654-682 1-29 (33)
439 COG1747 Uncharacterized N-term 53.8 4E+02 0.0087 30.7 19.2 21 857-877 272-292 (711)
440 KOG2114 Vacuolar assembly/sort 53.6 3.1E+02 0.0068 33.5 14.7 240 649-912 343-596 (933)
441 COG5187 RPN7 26S proteasome re 53.3 1.3E+02 0.0028 31.7 10.3 99 417-542 113-219 (412)
442 PF11846 DUF3366: Domain of un 52.6 42 0.0009 33.6 7.0 52 860-911 127-178 (193)
443 PF12739 TRAPPC-Trs85: ER-Golg 52.0 2.5E+02 0.0054 32.0 13.8 29 677-705 373-401 (414)
444 PF11817 Foie-gras_1: Foie gra 51.7 77 0.0017 33.2 9.0 81 726-806 153-244 (247)
445 PF00244 14-3-3: 14-3-3 protei 51.3 3E+02 0.0065 28.5 14.6 56 643-698 4-61 (236)
446 PF11822 DUF3342: Domain of un 50.0 5.5 0.00012 42.5 0.1 53 306-360 61-113 (317)
447 COG4941 Predicted RNA polymera 50.0 3.7E+02 0.0081 29.2 14.7 181 499-707 214-398 (415)
448 PF09670 Cas_Cas02710: CRISPR- 49.8 3.1E+02 0.0067 30.8 13.9 61 643-703 134-198 (379)
449 KOG0686 COP9 signalosome, subu 49.7 1.3E+02 0.0028 33.4 10.1 61 749-809 151-216 (466)
450 KOG4279 Serine/threonine prote 49.7 1E+02 0.0023 36.6 9.9 162 748-910 201-399 (1226)
451 PF04190 DUF410: Protein of un 49.6 3.4E+02 0.0073 28.6 20.0 66 638-703 88-170 (260)
452 PF13041 PPR_2: PPR repeat fam 49.5 56 0.0012 24.1 5.6 39 843-881 2-42 (50)
453 PF12854 PPR_1: PPR repeat 49.2 38 0.00083 22.9 4.1 26 674-699 7-32 (34)
454 cd02682 MIT_AAA_Arch MIT: doma 48.7 34 0.00074 28.2 4.4 22 850-871 12-33 (75)
455 KOG1920 IkappaB kinase complex 48.5 3.7E+02 0.0081 34.2 14.7 188 655-889 852-1044(1265)
456 COG5159 RPN6 26S proteasome re 48.5 3.6E+02 0.0077 28.6 23.2 102 755-856 213-331 (421)
457 PF08311 Mad3_BUB1_I: Mad3/BUB 48.2 2.2E+02 0.0049 26.2 13.9 98 708-807 23-126 (126)
458 COG3014 Uncharacterized protei 47.9 4E+02 0.0087 29.0 14.3 116 782-915 127-251 (449)
459 PF09670 Cas_Cas02710: CRISPR- 47.8 3.9E+02 0.0084 30.0 14.3 28 421-448 133-160 (379)
460 PF10255 Paf67: RNA polymerase 46.7 49 0.0011 37.1 6.7 59 517-576 124-192 (404)
461 cd02680 MIT_calpain7_2 MIT: do 45.3 30 0.00065 28.6 3.6 17 857-873 19-35 (75)
462 PF13041 PPR_2: PPR repeat fam 45.3 67 0.0015 23.7 5.4 28 750-777 5-32 (50)
463 PF10255 Paf67: RNA polymerase 44.3 35 0.00076 38.2 5.2 58 644-702 126-192 (404)
464 KOG2075 Topoisomerase TOP1-int 43.4 26 0.00056 39.3 3.9 44 318-365 185-228 (521)
465 COG4455 ImpE Protein of avirul 43.4 1.1E+02 0.0024 30.9 7.8 59 649-707 10-68 (273)
466 PF05053 Menin: Menin; InterP 43.3 1.6E+02 0.0035 34.1 10.0 44 499-542 297-345 (618)
467 KOG2422 Uncharacterized conser 42.3 6.3E+02 0.014 29.7 20.7 48 654-701 252-311 (665)
468 COG5187 RPN7 26S proteasome re 41.6 4.6E+02 0.0099 27.9 12.8 135 636-777 69-221 (412)
469 COG5536 BET4 Protein prenyltra 40.6 2.5E+02 0.0053 29.7 10.0 125 797-921 49-194 (328)
470 KOG0276 Vesicle coat complex C 39.3 2.4E+02 0.0051 33.1 10.5 50 523-576 645-694 (794)
471 PF01535 PPR: PPR repeat; Int 39.0 41 0.00089 21.5 3.1 25 751-775 3-27 (31)
472 COG1747 Uncharacterized N-term 38.5 6.8E+02 0.015 29.0 23.8 58 853-910 214-292 (711)
473 KOG4151 Myosin assembly protei 38.1 1.4E+02 0.0031 35.9 9.0 79 845-923 92-173 (748)
474 cd02683 MIT_1 MIT: domain cont 37.9 1.5E+02 0.0032 24.7 6.7 31 418-448 5-35 (77)
475 PF04212 MIT: MIT (microtubule 37.8 64 0.0014 26.0 4.6 31 418-448 4-34 (69)
476 cd02681 MIT_calpain7_1 MIT: do 37.6 44 0.00095 27.7 3.5 17 856-872 18-34 (76)
477 smart00671 SEL1 Sel1-like repe 36.5 56 0.0012 21.8 3.5 29 421-449 3-35 (36)
478 PF01535 PPR: PPR repeat; Int 36.4 57 0.0012 20.7 3.4 26 847-872 3-28 (31)
479 PF11846 DUF3366: Domain of un 36.3 80 0.0017 31.5 6.1 52 531-582 127-178 (193)
480 cd02681 MIT_calpain7_1 MIT: do 36.2 66 0.0014 26.7 4.4 31 418-448 5-35 (76)
481 KOG1497 COP9 signalosome, subu 35.7 2.8E+02 0.006 29.9 9.6 94 590-702 105-212 (399)
482 KOG0687 26S proteasome regulat 35.2 4.4E+02 0.0095 28.6 11.0 97 674-777 104-210 (393)
483 PF08238 Sel1: Sel1 repeat; I 34.9 81 0.0017 21.5 4.2 30 420-449 2-38 (39)
484 KOG3342 Signal peptidase I [In 34.8 23 0.0005 33.0 1.6 19 217-235 80-100 (180)
485 PHA02537 M terminase endonucle 34.7 79 0.0017 32.5 5.6 43 882-925 174-225 (230)
486 KOG4279 Serine/threonine prote 34.6 1E+02 0.0022 36.7 6.9 124 639-795 200-335 (1226)
487 PF05053 Menin: Menin; InterP 34.1 3.9E+02 0.0085 31.2 11.2 83 676-776 259-346 (618)
488 smart00745 MIT Microtubule Int 33.3 2.1E+02 0.0045 23.4 7.1 32 417-448 6-37 (77)
489 TIGR00756 PPR pentatricopeptid 32.9 72 0.0016 20.7 3.6 26 751-776 3-28 (35)
490 smart00299 CLH Clathrin heavy 32.5 2.3E+02 0.0051 26.2 8.3 114 789-918 16-132 (140)
491 cd02679 MIT_spastin MIT: domai 32.2 70 0.0015 26.8 3.9 16 857-872 21-36 (79)
492 PF10952 DUF2753: Protein of u 32.0 1.6E+02 0.0034 26.9 6.2 64 847-910 4-87 (140)
493 PF14863 Alkyl_sulf_dimr: Alky 30.6 2.2E+02 0.0047 26.9 7.4 53 547-605 69-121 (141)
494 PF12178 INCENP_N: Chromosome 28.9 28 0.00061 24.3 0.9 23 302-324 3-25 (38)
495 PF10932 DUF2783: Protein of u 28.4 1.7E+02 0.0036 23.0 4.9 49 82-134 9-59 (60)
496 cd02678 MIT_VPS4 MIT: domain c 28.0 2.7E+02 0.0058 22.9 6.8 31 418-448 5-35 (75)
497 PF04212 MIT: MIT (microtubule 27.8 1.2E+02 0.0026 24.3 4.6 26 751-776 8-33 (69)
498 smart00101 14_3_3 14-3-3 homol 27.5 7.2E+02 0.016 25.9 17.1 42 677-718 4-49 (244)
499 cd02677 MIT_SNX15 MIT: domain 26.9 1.2E+02 0.0025 25.2 4.3 32 417-448 4-35 (75)
500 PF07219 HemY_N: HemY protein 26.8 2.3E+02 0.0049 25.2 6.7 49 844-892 59-108 (108)
No 1
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=6.2e-43 Score=373.20 Aligned_cols=434 Identities=18% Similarity=0.151 Sum_probs=375.0
Q ss_pred HHHhhHHHHhcccHHHHHHHHHHHHhcCccccHHH--HHHHHHHhchHHHHHHHHHhhhccCCCchhhhHHHHHHhhhhH
Q 002379 422 LHQLGCVMFEREEYKDACYYFEAAADAGHIYSLAG--LARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNLGRE 499 (929)
Q Consensus 422 ~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~~~a~--la~~~~~~g~a~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 499 (929)
...++...++.|+|.+|.+..+.+-+.+|.+.... +...+++ +. ..+.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q-~~-----------------------------r~d~ 100 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQ-GS-----------------------------RLDK 100 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhc-cc-----------------------------chhh
Confidence 45688888999999999999999999988876531 1111111 11 1112
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccC-CHhHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Q 002379 500 KIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLALLALE 578 (929)
Q Consensus 500 Ai~~~~kal~l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~ 578 (929)
...--..+++.+|..+++|-++|+++.+.|++++|+..|+.+++++| ..+.|.++|.++...|+.+.|...|..+++++
T Consensus 101 s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqln 180 (966)
T KOG4626|consen 101 SSAGSLLAIRKNPQGAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLN 180 (966)
T ss_pred hhhhhhhhhhccchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC
Confidence 23333456778888888888888888888888888888888888888 77788888888888888888888888888888
Q ss_pred CCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHH
Q 002379 579 SNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKA 658 (929)
Q Consensus 579 p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~ 658 (929)
|+.. .+...+|.+....|+..+| -++|.++++.+|..+.+|.++|-++..+|+...
T Consensus 181 P~l~------ca~s~lgnLlka~Grl~ea------------------~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~ 236 (966)
T KOG4626|consen 181 PDLY------CARSDLGNLLKAEGRLEEA------------------KACYLKAIETQPCFAIAWSNLGCVFNAQGEIWL 236 (966)
T ss_pred cchh------hhhcchhHHHHhhcccchh------------------HHHHHHHHhhCCceeeeehhcchHHhhcchHHH
Confidence 8887 5566688888888888888 445588888888888888888888888888888
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch-HHHHHHHHHHHhcCCCCCChHHHHHHHHHH
Q 002379 659 AMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEA 737 (929)
Q Consensus 659 A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~~~~~l~~~l~~~~~~~~~~~~a~~~~e~A 737 (929)
|+..|++|++++|..+++|+++|.+|...+.+++|+.+|.+|+.+.|++ .++-+++.+|.++| .++-|
T Consensus 237 aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG-----------~ldlA 305 (966)
T KOG4626|consen 237 AIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQG-----------LLDLA 305 (966)
T ss_pred HHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccc-----------cHHHH
Confidence 8888888888888888888888888888888888888888888888888 88888888888777 77788
Q ss_pred hhchhccCc--h--hHHHHHHHHHHHHcCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcc
Q 002379 738 LRCPSDGLR--K--GQALNNLGSIYVECGKLDQAENCYINALDI--KHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQ 811 (929)
Q Consensus 738 l~~~~~al~--~--~~a~~~lg~~~~~~g~~~eA~~~~~~al~~--~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p 811 (929)
+.+|++++. | .++|+++|.++...|+..+|+++|.+++.+ .++++.++||.+|..+|++++|...|.++++..|
T Consensus 306 I~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p 385 (966)
T KOG4626|consen 306 IDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFP 385 (966)
T ss_pred HHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhCh
Confidence 888887754 3 589999999999999999999999999999 7889999999999999999999999999999999
Q ss_pred CCHHHHHHHh----hhCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHH-HHHHH
Q 002379 812 YSASAFEKRS----EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLH-LRAAF 886 (929)
Q Consensus 812 ~~~~~~~~lg----~~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~-~la~~ 886 (929)
..+.+..+++ +.|++++|+.+|++++.+.|..++++.++|.+|..+|+.+.|+..|.+||.++|....++ ++|.+
T Consensus 386 ~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi 465 (966)
T KOG4626|consen 386 EFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASI 465 (966)
T ss_pred hhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHH
Confidence 9999999999 679999999999999999999999999999999999999999999999999999998888 88999
Q ss_pred HHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHH
Q 002379 887 YESIGDLTSAIRDSQAALCLDPNHMETLDLYNRA 920 (929)
Q Consensus 887 ~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~l 920 (929)
|...|+..+|+..|+.+|+++|+.++++-++...
T Consensus 466 ~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~ 499 (966)
T KOG4626|consen 466 YKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHC 499 (966)
T ss_pred hhccCCcHHHHHHHHHHHccCCCCchhhhHHHHH
Confidence 9999999999999999999999999998776543
No 2
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=8.6e-40 Score=349.24 Aligned_cols=382 Identities=19% Similarity=0.187 Sum_probs=350.1
Q ss_pred HHHHHHHHHHhhHHHHhcccHHHHHHHHHHHHhcCccccHHHHHHHHHHhchHHHHHHHHHhhhccCCCchhhhHHHHHH
Q 002379 415 RWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGHIYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLY 494 (929)
Q Consensus 415 ~~~~a~~~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~~~a~la~~~~~~g~a~~a~~~~~~~~~~~~~~~~~~~~~~l~ 494 (929)
.++-+.+|.++|+++-++|++++|+..|+.+++++|.+.. +|...+.++.
T Consensus 112 ~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fid------------------------------a~inla~al~ 161 (966)
T KOG4626|consen 112 NPQGAEAYSNLANILKERGQLQDALALYRAAIELKPKFID------------------------------AYINLAAALV 161 (966)
T ss_pred cchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhH------------------------------HHhhHHHHHH
Confidence 4567889999999999999999999999999999998776 2333333333
Q ss_pred hhhh--HHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccC-CHhHHHHHHHHHHHhccHHHHHHHH
Q 002379 495 NLGR--EKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDT 571 (929)
Q Consensus 495 ~~~~--~Ai~~~~kal~l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~~g~~~~A~~~~ 571 (929)
..++ .|..+|.+|++++|...-+...+|..+..+|+.++|..+|.++++..| -.-+|.++|..+...|+...|+..|
T Consensus 162 ~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y 241 (966)
T KOG4626|consen 162 TQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHY 241 (966)
T ss_pred hcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHH
Confidence 3343 889999999999999999999999999999999999999999998888 4556889999999999999999999
Q ss_pred HHHHhhcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHHH
Q 002379 572 LALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLL 651 (929)
Q Consensus 572 ~~al~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~lg~~~~ 651 (929)
+++++++|+.. +++..+|.++...+.+++| +.+|.+++...|+++.++.++|.+|+
T Consensus 242 ~eAvkldP~f~------dAYiNLGnV~ke~~~~d~A------------------vs~Y~rAl~lrpn~A~a~gNla~iYy 297 (966)
T KOG4626|consen 242 EEAVKLDPNFL------DAYINLGNVYKEARIFDRA------------------VSCYLRALNLRPNHAVAHGNLACIYY 297 (966)
T ss_pred HHhhcCCCcch------HHHhhHHHHHHHHhcchHH------------------HHHHHHHHhcCCcchhhccceEEEEe
Confidence 99999999999 8888999999999999999 67779999999999999999999999
Q ss_pred HhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHHHHHhcCCCCCChHHHH
Q 002379 652 RLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVI 731 (929)
Q Consensus 652 ~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~l~~~l~~~~~~~~~~~~a~ 731 (929)
.+|..+-|+..|++++++.|..++++.++|.++...|+..+|..+|.+++.+.|++
T Consensus 298 eqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~h------------------------ 353 (966)
T KOG4626|consen 298 EQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNH------------------------ 353 (966)
T ss_pred ccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCcc------------------------
Confidence 99999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 002379 732 QLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI--KHTRAHQGLARVYYLKNELKAAYDEMTKLLEK 809 (929)
Q Consensus 732 ~~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~--~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~ 809 (929)
+++.++||.+|.++|++++|...|.++++. .-..++.+||.+|.++|++++|+..|+.++.+
T Consensus 354 ----------------adam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI 417 (966)
T KOG4626|consen 354 ----------------ADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI 417 (966)
T ss_pred ----------------HHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc
Confidence 677899999999999999999999999999 44578999999999999999999999999999
Q ss_pred ccCCHHHHHHHh----hhCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHH-HHH
Q 002379 810 AQYSASAFEKRS----EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLH-LRA 884 (929)
Q Consensus 810 ~p~~~~~~~~lg----~~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~-~la 884 (929)
.|..++++.++| ++|+.+.|+++|.+|+.++|..++++.+||.+|...|+..+|+..|+.+++++|+.+.++ +++
T Consensus 418 ~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNll 497 (966)
T KOG4626|consen 418 KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLL 497 (966)
T ss_pred CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHH
Confidence 999999999999 789999999999999999999999999999999999999999999999999999998777 565
Q ss_pred HHHHHc
Q 002379 885 AFYESI 890 (929)
Q Consensus 885 ~~~~~~ 890 (929)
.++.-.
T Consensus 498 h~lq~v 503 (966)
T KOG4626|consen 498 HCLQIV 503 (966)
T ss_pred HHHHHH
Confidence 555443
No 3
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=3.1e-33 Score=352.74 Aligned_cols=490 Identities=14% Similarity=0.078 Sum_probs=392.1
Q ss_pred chHHHHHHHHHhhcchHHHHHHHHHHHhhHHHHhcccHHHHHHHHHHHHhcCccccHH--HHHHHHHHhchHHHHHHHHH
Q 002379 398 SNTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGHIYSLA--GLARAKYKVGQQYSAYKLIN 475 (929)
Q Consensus 398 ~~~~~~~Le~l~~~~~~~~~~a~~~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~~~a--~la~~~~~~g~a~~a~~~~~ 475 (929)
.+.+...++++.+..+. ....+..+|..+...|++++|+..|+++++.+|..... .++..+...|+...+...+.
T Consensus 379 ~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 455 (899)
T TIGR02917 379 FEKAAEYLAKATELDPE---NAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAK 455 (899)
T ss_pred HHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHH
Confidence 34455555555444332 23355666777777777777777777777666554433 44455555555444433333
Q ss_pred hhhcc--CCCchhhhHHHHHHhhhh--HHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccC-CHhH
Q 002379 476 SIISE--HKPTGWMYQERSLYNLGR--EKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDC 550 (929)
Q Consensus 476 ~~~~~--~~~~~~~~~~~~l~~~~~--~Ai~~~~kal~l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~ 550 (929)
..... ..+..|...+..+...++ +|+..|+++++.+|++..+++.+|.++...|++++|+..|++++...| +...
T Consensus 456 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 535 (899)
T TIGR02917 456 KLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRA 535 (899)
T ss_pred HHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHH
Confidence 33222 134456666666666555 777777777777777777777777777777777777777777776666 5566
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHH
Q 002379 551 LELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVIN 630 (929)
Q Consensus 551 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~ 630 (929)
+..++.++...|++++|+..+++++..+|.+. .....++..+...|++++|...+ +
T Consensus 536 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~A~~~~------------------~ 591 (899)
T TIGR02917 536 ILALAGLYLRTGNEEEAVAWLEKAAELNPQEI------EPALALAQYYLGKGQLKKALAIL------------------N 591 (899)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCccch------hHHHHHHHHHHHCCCHHHHHHHH------------------H
Confidence 66777777777777777777777777777766 55556677777777777775544 8
Q ss_pred HHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch-HH
Q 002379 631 QMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EA 709 (929)
Q Consensus 631 ~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~~ 709 (929)
+++...|.++.+|..+|.++...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..|+++++.+|++ ..
T Consensus 592 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 671 (899)
T TIGR02917 592 EAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEA 671 (899)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999998 89
Q ss_pred HHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCc----hhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC-CCHHHHH
Q 002379 710 FFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLR----KGQALNNLGSIYVECGKLDQAENCYINALDI-KHTRAHQ 784 (929)
Q Consensus 710 ~~~l~~~l~~~~~~~~~~~~a~~~~e~Al~~~~~al~----~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~-~~~~a~~ 784 (929)
+..++..+...+ ++++|+..++.... ....+..+|.++...|++++|+..|++++.. .....+.
T Consensus 672 ~~~l~~~~~~~~-----------~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 740 (899)
T TIGR02917 672 QIGLAQLLLAAK-----------RTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAI 740 (899)
T ss_pred HHHHHHHHHHcC-----------CHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHH
Confidence 999999998887 67777777666533 3577889999999999999999999999998 3347888
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHh----hhCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCH
Q 002379 785 GLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS----EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKE 860 (929)
Q Consensus 785 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg----~~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~ 860 (929)
.++.++...|++++|...++++++..|++..++..+| ..|++++|+..|+++++.+|.++.++..+|.++...|+
T Consensus 741 ~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~- 819 (899)
T TIGR02917 741 KLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD- 819 (899)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-
Confidence 9999999999999999999999999999999999888 57999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCchHHH-HHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHhhhhh
Q 002379 861 VEAVEELSKAIAFKPDLQMLH-LRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNRARDQASH 926 (929)
Q Consensus 861 ~eA~~~l~kal~~~p~~~~~~-~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~l~~~~~~ 926 (929)
.+|+..++++++..|+++... .+|.++...|++++|+..|+++++.+|.++.++..+..+....++
T Consensus 820 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~ 886 (899)
T TIGR02917 820 PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGR 886 (899)
T ss_pred HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCC
Confidence 889999999999999987665 779999999999999999999999999999999999887765544
No 4
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=2e-32 Score=345.36 Aligned_cols=493 Identities=18% Similarity=0.148 Sum_probs=348.4
Q ss_pred HHHHHHHHHHHhhHHHHhcccHHHHHHHHHHHHhcCccccHH--HHHHHHHHhchHHHHHHHHHhhhcc--CCCchhhhH
Q 002379 414 ERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGHIYSLA--GLARAKYKVGQQYSAYKLINSIISE--HKPTGWMYQ 489 (929)
Q Consensus 414 ~~~~~a~~~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~~~a--~la~~~~~~g~a~~a~~~~~~~~~~--~~~~~~~~~ 489 (929)
..+..+..++.+|..++..|++++|+..|+++++.+|....+ .++..+...|+...+.+.+...+.. .....|+..
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 199 (899)
T TIGR02917 120 DDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLK 199 (899)
T ss_pred CchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 344567788999999999999999999999999998877655 7777888888755555444443322 145678888
Q ss_pred HHHHHhhhh--HHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccC-CHhHHHHHHHHHHHhccHHH
Q 002379 490 ERSLYNLGR--EKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYES 566 (929)
Q Consensus 490 ~~~l~~~~~--~Ai~~~~kal~l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~~g~~~~ 566 (929)
+..+...++ +|+..|+++++.+|.++..+..++.++...|++++|...++++++..| ++..+..+|.+++..|++++
T Consensus 200 ~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (899)
T TIGR02917 200 GDLLLSLGNIELALAAYRKAIALRPNNPAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYED 279 (899)
T ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCHHH
Confidence 888887776 999999999999999999999999999999999999999999998877 66778888999999999999
Q ss_pred HHHHHHHHHhhcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhcccc----------------ccccccHHHHH
Q 002379 567 ALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSS----------------VDDIGSLAVIN 630 (929)
Q Consensus 567 A~~~~~~al~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~----------------~~~~~~l~~~~ 630 (929)
|+..|+++++.+|++. .+...++.++...|++++|...++....... .+...++..+.
T Consensus 280 A~~~~~~~l~~~~~~~------~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 353 (899)
T TIGR02917 280 ARETLQDALKSAPEYL------PALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLS 353 (899)
T ss_pred HHHHHHHHHHhCCCch------hHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999999999887 6667788888999999998777644211110 11112255666
Q ss_pred HHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch-HH
Q 002379 631 QMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EA 709 (929)
Q Consensus 631 ~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~~ 709 (929)
+++..+|.++..+..+|.++...|++++|+..|+++++.+|+++..+..+|.++...|++++|+..++++++..|+. ..
T Consensus 354 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 433 (899)
T TIGR02917 354 PALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRA 433 (899)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhh
Confidence 77777777777788888888888888888888888888888877788888888888888888888888888877776 66
Q ss_pred HHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCc----hhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC--CCHHHH
Q 002379 710 FFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLR----KGQALNNLGSIYVECGKLDQAENCYINALDI--KHTRAH 783 (929)
Q Consensus 710 ~~~l~~~l~~~~~~~~~~~~a~~~~e~Al~~~~~al~----~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~--~~~~a~ 783 (929)
...++..+...+ .+++|+..+.+... ....+..+|.++...|++++|+..|+++++. ++..++
T Consensus 434 ~~~l~~~~~~~~-----------~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 502 (899)
T TIGR02917 434 DLLLILSYLRSG-----------QFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAA 502 (899)
T ss_pred HHHHHHHHHhcC-----------CHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHH
Confidence 666666665554 34444444443322 1345666666666666666666666666655 334455
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHh--------------------------------------hhCC
Q 002379 784 QGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS--------------------------------------EYSD 825 (929)
Q Consensus 784 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg--------------------------------------~~g~ 825 (929)
..+|.++...|++++|...+++++...|++..++..++ ..|+
T Consensus 503 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 582 (899)
T TIGR02917 503 ANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQ 582 (899)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCC
Confidence 66666666666666666666666665555555444443 2355
Q ss_pred HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHH-HHHHHHHHcCCHHHHHHHHHHHh
Q 002379 826 REMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLH-LRAAFYESIGDLTSAIRDSQAAL 904 (929)
Q Consensus 826 ~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~-~la~~~~~~g~~~~A~~~~~~al 904 (929)
+++|+..++++++..|.++..|..+|.++...|++++|+..|+++++..|+++..+ .+|.++...|++++|+..|++++
T Consensus 583 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 662 (899)
T TIGR02917 583 LKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRAL 662 (899)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 55555555555555555566666666666666666666666666666666554433 44666666666666666666666
Q ss_pred ccCCCCHHHHHHHHHHHhh
Q 002379 905 CLDPNHMETLDLYNRARDQ 923 (929)
Q Consensus 905 ~l~P~~~~a~~~~~~l~~~ 923 (929)
+.+|++..++..+..+...
T Consensus 663 ~~~~~~~~~~~~l~~~~~~ 681 (899)
T TIGR02917 663 ELKPDNTEAQIGLAQLLLA 681 (899)
T ss_pred hcCCCCHHHHHHHHHHHHH
Confidence 6666666666555555433
No 5
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=2e-31 Score=339.19 Aligned_cols=485 Identities=13% Similarity=0.036 Sum_probs=339.2
Q ss_pred hhhhhhhhc-ccchHHHHHHHHHhhcchHHHHHHHHHHHhhHHHHhcccHHHHHHHHHHHHhcCccccHH----------
Q 002379 387 LSQVAMEKD-RVSNTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGHIYSLA---------- 455 (929)
Q Consensus 387 l~~~~~~~~-~~~~~~~~~Le~l~~~~~~~~~~a~~~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~~~a---------- 455 (929)
+.++.+-.. .+.+.+...|+++....++++ .++..++.+++..|++++|.+.++++++++|.+..+
T Consensus 32 l~q~~~~~~~~~~d~a~~~l~kl~~~~p~~p---~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~ 108 (1157)
T PRK11447 32 LEQVRLGEATHREDLVRQSLYRLELIDPNNP---DVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLS 108 (1157)
T ss_pred HHHHHHHHhhCChHHHHHHHHHHHccCCCCH---HHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhc
Confidence 344444332 345667788999988887764 466788999999999999999999999999987653
Q ss_pred --------HHHHHHHHhchHHHHHHHHHhhhccCCCc---hhhhHHHHHH--hhhhHHHHHHHHHHhcCCCChHHHHHHH
Q 002379 456 --------GLARAKYKVGQQYSAYKLINSIISEHKPT---GWMYQERSLY--NLGREKIVDLNYASELDPTLSFPYKYRA 522 (929)
Q Consensus 456 --------~la~~~~~~g~a~~a~~~~~~~~~~~~~~---~~~~~~~~l~--~~~~~Ai~~~~kal~l~P~~~~a~~~~a 522 (929)
.+++.+...|+..++.......+....+. +..+...... ....+|+..|+++++.+|+++.++..+|
T Consensus 109 ~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA 188 (1157)
T PRK11447 109 TPEGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLA 188 (1157)
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 23445666666555555444444432222 2222222222 2333999999999999999999999999
Q ss_pred HHHHHhCCHHHHHHHHHHHhcccCC------------------HhH----------------------------------
Q 002379 523 VAKMEEGQIRAAISEIDRIIVFKLS------------------VDC---------------------------------- 550 (929)
Q Consensus 523 ~~~~~~g~~~~A~~~~~~al~~~~~------------------~~~---------------------------------- 550 (929)
.++...|++++|+..+++++...+. +..
T Consensus 189 ~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp 268 (1157)
T PRK11447 189 LLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADP 268 (1157)
T ss_pred HHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCc
Confidence 9999999999999999988643210 000
Q ss_pred ---HHHHHHHHHHhccHHHHHHHHHHHHhhcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHH
Q 002379 551 ---LELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLA 627 (929)
Q Consensus 551 ---~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~ 627 (929)
...+|..+...|++++|+..|+++++.+|++. .++..++.++...|++++|+..+
T Consensus 269 ~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~------~a~~~Lg~~~~~~g~~~eA~~~l---------------- 326 (1157)
T PRK11447 269 AFRARAQGLAAVDSGQGGKAIPELQQAVRANPKDS------EALGALGQAYSQQGDRARAVAQF---------------- 326 (1157)
T ss_pred chHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCHHHHHHHH----------------
Confidence 01337778889999999999999999999998 88889999999999999996666
Q ss_pred HHHHHHhcCCCChH--------------HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHH
Q 002379 628 VINQMLINDPGKSF--------------LRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEA 693 (929)
Q Consensus 628 ~~~~al~~~p~~~~--------------~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA 693 (929)
+++++.+|++.. ....+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|
T Consensus 327 --~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA 404 (1157)
T PRK11447 327 --EKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAA 404 (1157)
T ss_pred --HHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 899999887653 2235588899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccch-HHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCc-------------hhHHHHHHHHHHH
Q 002379 694 LSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLR-------------KGQALNNLGSIYV 759 (929)
Q Consensus 694 ~~~~~~al~~~p~~-~~~~~l~~~l~~~~~~~~~~~~a~~~~e~Al~~~~~al~-------------~~~a~~~lg~~~~ 759 (929)
++.|+++++++|++ .++..++..+.... +++|+..+.+... ....+..+|.++.
T Consensus 405 ~~~y~~aL~~~p~~~~a~~~L~~l~~~~~------------~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~ 472 (1157)
T PRK11447 405 ERYYQQALRMDPGNTNAVRGLANLYRQQS------------PEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALE 472 (1157)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhcC------------HHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 99999999999999 78887877764321 2222222221110 0123455666666
Q ss_pred HcCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHH------------------
Q 002379 760 ECGKLDQAENCYINALDI--KHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEK------------------ 819 (929)
Q Consensus 760 ~~g~~~eA~~~~~~al~~--~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~------------------ 819 (929)
..|++++|+..|+++++. +++.+++.+|.+|...|++++|+..++++++..|+++..++.
T Consensus 473 ~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l 552 (1157)
T PRK11447 473 NQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHL 552 (1157)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 666666666666666666 334556666666666666666666666666666655544332
Q ss_pred --------------------------------------------------------Hh----hhCCHHHHHHHHHHHHhc
Q 002379 820 --------------------------------------------------------RS----EYSDREMAKNDLNMATQL 839 (929)
Q Consensus 820 --------------------------------------------------------lg----~~g~~~~A~~~~~~al~l 839 (929)
+| ..|++++|+..|+++++.
T Consensus 553 ~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~ 632 (1157)
T PRK11447 553 NTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR 632 (1157)
T ss_pred HhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 23 235556666666666666
Q ss_pred CCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHH-HHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 002379 840 DPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLH-LRAAFYESIGDLTSAIRDSQAALCLDPNH 910 (929)
Q Consensus 840 ~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~-~la~~~~~~g~~~~A~~~~~~al~l~P~~ 910 (929)
+|.++.++..+|.+|...|++++|++.++++++..|++...+ .+|.++...|++++|++.|++++...|++
T Consensus 633 ~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~ 704 (1157)
T PRK11447 633 EPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQ 704 (1157)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccC
Confidence 666666666666666666666666666666666555554433 34566666666666666666666555443
No 6
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=3.4e-30 Score=327.90 Aligned_cols=468 Identities=15% Similarity=0.062 Sum_probs=374.8
Q ss_pred ccchHHHHHHHHHhhcchHHHHHHHHHHHhhHHHHhcccHHHHHHHHHHHHhcCccccHHHHHHHHHH-------hchHH
Q 002379 396 RVSNTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGHIYSLAGLARAKYK-------VGQQY 468 (929)
Q Consensus 396 ~~~~~~~~~Le~l~~~~~~~~~~a~~~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~~~a~la~~~~~-------~g~a~ 468 (929)
...+.++..|+++.+..+... .++..+|.+++..|++++|+..|+++++..+....+. ..+.. .....
T Consensus 161 g~~~~A~~~L~~ll~~~P~~~---~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa--~~~~~~l~~~~~~~~~~ 235 (1157)
T PRK11447 161 AQRPEAINQLQRLNADYPGNT---GLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAA--QLWYGQIKDMPVSDASV 235 (1157)
T ss_pred ccHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHH--HHHHHHHhccCCChhhH
Confidence 345678888888887766543 4677899999999999999999999987644322111 11110 01112
Q ss_pred HHHHHHHhhhccC------------------CC-chhhhHHHHHHhhhh--HHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 002379 469 SAYKLINSIISEH------------------KP-TGWMYQERSLYNLGR--EKIVDLNYASELDPTLSFPYKYRAVAKME 527 (929)
Q Consensus 469 ~a~~~~~~~~~~~------------------~~-~~~~~~~~~l~~~~~--~Ai~~~~kal~l~P~~~~a~~~~a~~~~~ 527 (929)
..+.......++. .+ ......+..+...++ +|+..|+++++.+|+++.++..+|.++.+
T Consensus 236 ~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~ 315 (1157)
T PRK11447 236 AALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQ 315 (1157)
T ss_pred HHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 2222222211111 11 111234566666555 99999999999999999999999999999
Q ss_pred hCCHHHHHHHHHHHhcccCCH-h--------------HHHHHHHHHHHhccHHHHHHHHHHHHhhcCCchhhhccccHHH
Q 002379 528 EGQIRAAISEIDRIIVFKLSV-D--------------CLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDH 592 (929)
Q Consensus 528 ~g~~~~A~~~~~~al~~~~~~-~--------------~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~ 592 (929)
.|++++|+..|+++++..|+. . .....|..+...|++++|+..|+++++.+|++. .++.
T Consensus 316 ~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~------~a~~ 389 (1157)
T PRK11447 316 QGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDS------YAVL 389 (1157)
T ss_pred cCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH------HHHH
Confidence 999999999999999888732 1 123457788899999999999999999999998 7788
Q ss_pred HHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHH----------------------------
Q 002379 593 LVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRF---------------------------- 644 (929)
Q Consensus 593 ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~---------------------------- 644 (929)
.++.++...|++++|+..+ +++++.+|++..++.
T Consensus 390 ~Lg~~~~~~g~~~eA~~~y------------------~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~ 451 (1157)
T PRK11447 390 GLGDVAMARKDYAAAERYY------------------QQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRS 451 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHH------------------HHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHH
Confidence 8999999999999997666 666666666555443
Q ss_pred --------------HHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch-HH
Q 002379 645 --------------RQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EA 709 (929)
Q Consensus 645 --------------~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~~ 709 (929)
.+|..+...|++++|+..|+++++.+|+++.+++.+|.+|...|++++|+..++++++..|++ +.
T Consensus 452 ~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~ 531 (1157)
T PRK11447 452 IDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQ 531 (1157)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Confidence 345556678999999999999999999999999999999999999999999999999999999 88
Q ss_pred HHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCch--------------hHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002379 710 FFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRK--------------GQALNNLGSIYVECGKLDQAENCYINAL 775 (929)
Q Consensus 710 ~~~l~~~l~~~~~~~~~~~~a~~~~e~Al~~~~~al~~--------------~~a~~~lg~~~~~~g~~~eA~~~~~~al 775 (929)
++.++..+...+ ++++|+..+.+.... ......++..+...|++++|+..++.
T Consensus 532 ~~a~al~l~~~~-----------~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-- 598 (1157)
T PRK11447 532 VYAYGLYLSGSD-----------RDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-- 598 (1157)
T ss_pred HHHHHHHHHhCC-----------CHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh--
Confidence 888887777666 666676666654321 12345778899999999999999872
Q ss_pred cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHh----hhCCHHHHHHHHHHHHhcCCCCcHHHHHHH
Q 002379 776 DIKHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS----EYSDREMAKNDLNMATQLDPLRTYPYRYRA 851 (929)
Q Consensus 776 ~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg----~~g~~~~A~~~~~~al~l~p~~~~~~~~la 851 (929)
.-.++..+..+|.++...|++++|+..|+++++..|++..++..++ ..|++++|+..++++++..|+++..+..+|
T Consensus 599 ~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la 678 (1157)
T PRK11447 599 QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVA 678 (1157)
T ss_pred CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 2256678899999999999999999999999999999999999888 579999999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCchH------HH-HHHHHHHHcCCHHHHHHHHHHHhc
Q 002379 852 AVLMDDQKEVEAVEELSKAIAFKPDLQM------LH-LRAAFYESIGDLTSAIRDSQAALC 905 (929)
Q Consensus 852 ~~~~~~g~~~eA~~~l~kal~~~p~~~~------~~-~la~~~~~~g~~~~A~~~~~~al~ 905 (929)
.++...|++++|++.|++++...|+.+. .+ .+|.++...|++++|+..|++++.
T Consensus 679 ~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 679 LAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9999999999999999999998765432 22 459999999999999999999985
No 7
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=100.00 E-value=8.5e-30 Score=305.05 Aligned_cols=417 Identities=13% Similarity=0.071 Sum_probs=285.3
Q ss_pred HHHHHHHhhHHHHhcccHHHHHHHHHHHHhcCccccHHHHHHHHHHhchHHHHHHHHHhhhccCCCchhhhHHHHHHhhh
Q 002379 418 RMLALHQLGCVMFEREEYKDACYYFEAAADAGHIYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNLG 497 (929)
Q Consensus 418 ~a~~~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~~~a~la~~~~~~g~a~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 497 (929)
.+..+..+|+.++..|+|++|+..|+++++..|.. . .+.+.+......+ +.
T Consensus 126 ~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~-~-----~~~n~a~~~~~l~-----------------------~~ 176 (615)
T TIGR00990 126 YAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPDP-V-----YYSNRAACHNALG-----------------------DW 176 (615)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCch-H-----HHHHHHHHHHHhC-----------------------CH
Confidence 46678899999999999999999999999998852 2 2333333222222 44
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccCCHhHHHHHHHHHHHhccHHHHHHHHHHHHhh
Q 002379 498 REKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLAL 577 (929)
Q Consensus 498 ~~Ai~~~~kal~l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~ 577 (929)
++|+..++++++++|++..+|+.+|.++..+|++++|+..|..+....+...... .... ...-...+......+++.
T Consensus 177 ~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~--~~~~-~~~l~~~a~~~~~~~l~~ 253 (615)
T TIGR00990 177 EKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQS--AQAV-ERLLKKFAESKAKEILET 253 (615)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHH--HHHH-HHHHHHHHHHHHHHHHhc
Confidence 5899999999999999999999999999999999999999988875554211111 1111 111113445556666676
Q ss_pred cCCchhhhccccHHHHHHHHHHhhcccchHHHHH---------------Hhhhcc----ccccccccHHHHHHHHhc---
Q 002379 578 ESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWI---------------KLYDRW----SSVDDIGSLAVINQMLIN--- 635 (929)
Q Consensus 578 ~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l---------------~l~~~~----~~~~~~~~l~~~~~al~~--- 635 (929)
.|.+. .....++..+... ....+...+ .++... .......++..|++++..
T Consensus 254 ~~~~~------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~ 326 (615)
T TIGR00990 254 KPENL------PSVTFVGNYLQSF-RPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKL 326 (615)
T ss_pred CCCCC------CCHHHHHHHHHHc-cCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCC
Confidence 76665 2222233322111 000000000 000000 000000113333444443
Q ss_pred CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHH
Q 002379 636 DPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAY 715 (929)
Q Consensus 636 ~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~l~~ 715 (929)
.|..+.++..+|.++..+|++++|+..|+++++.+|.....+..+|.++...|++++|+..|+++++.+|++
T Consensus 327 ~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~-------- 398 (615)
T TIGR00990 327 GEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSED-------- 398 (615)
T ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC--------
Confidence 244445555555555555555555555555555555555555555555555555555555555555555544
Q ss_pred HHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHh
Q 002379 716 ILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI--KHTRAHQGLARVYYLK 793 (929)
Q Consensus 716 ~l~~~~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~--~~~~a~~~la~~~~~~ 793 (929)
..+++.+|.++...|++++|+.+|++++++ ++..++..+|.++..+
T Consensus 399 --------------------------------~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~ 446 (615)
T TIGR00990 399 --------------------------------PDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKE 446 (615)
T ss_pred --------------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHC
Confidence 467888999999999999999999999998 4567889999999999
Q ss_pred CCHHHHHHHHHHHHHHccCCHHHHHHHh----hhCCHHHHHHHHHHHHhcCCCCcHH------HHHHHHHH-HhcCCHHH
Q 002379 794 NELKAAYDEMTKLLEKAQYSASAFEKRS----EYSDREMAKNDLNMATQLDPLRTYP------YRYRAAVL-MDDQKEVE 862 (929)
Q Consensus 794 g~~~~A~~~~~~al~~~p~~~~~~~~lg----~~g~~~~A~~~~~~al~l~p~~~~~------~~~la~~~-~~~g~~~e 862 (929)
|++++|+..+++++...|+++.++..+| ..|++++|+..|+++++++|..... +...+.++ ...|++++
T Consensus 447 g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~e 526 (615)
T TIGR00990 447 GSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIE 526 (615)
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHH
Confidence 9999999999999999999999988888 6799999999999999999864332 23333333 34699999
Q ss_pred HHHHHHHHHhcCCCchHHH-HHHHHHHHcCCHHHHHHHHHHHhccCCCCHHH
Q 002379 863 AVEELSKAIAFKPDLQMLH-LRAAFYESIGDLTSAIRDSQAALCLDPNHMET 913 (929)
Q Consensus 863 A~~~l~kal~~~p~~~~~~-~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a 913 (929)
|+..++++++++|++...+ .+|.++..+|++++|+.+|++++++.+...+.
T Consensus 527 A~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e~ 578 (615)
T TIGR00990 527 AENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGEL 578 (615)
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHHH
Confidence 9999999999999887655 67999999999999999999999999876554
No 8
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.97 E-value=5.5e-27 Score=285.01 Aligned_cols=503 Identities=12% Similarity=-0.048 Sum_probs=320.6
Q ss_pred ccchHHHHHHHHHhhcchHHHHHHHHHHHhhHHHHhcccHHHHHHHHHHHHhcCccccHHHHHH-HHHHhchHHHHHHHH
Q 002379 396 RVSNTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGHIYSLAGLAR-AKYKVGQQYSAYKLI 474 (929)
Q Consensus 396 ~~~~~~~~~Le~l~~~~~~~~~~a~~~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~~~a~la~-~~~~~g~a~~a~~~~ 474 (929)
.+.+.++..++++.+..|+. +.+++.++..|+..|++++|+..++++++.+|.+....+.. ...+..++...|+++
T Consensus 58 Gd~~~A~~~l~~Al~~dP~n---~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i~~~~kA~~~ye~l 134 (987)
T PRK09782 58 NDEATAIREFEYIHQQVPDN---IPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAIPVEVKSVTTVEEL 134 (987)
T ss_pred CCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHhccChhHHHHHHHH
Confidence 34456666666666665554 34556777777777777777777777777777655542211 113334455666666
Q ss_pred HhhhccCCCchhhhHHHH------H-HhhhhHHHHHHH-HHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccC
Q 002379 475 NSIISEHKPTGWMYQERS------L-YNLGREKIVDLN-YASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL 546 (929)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~------l-~~~~~~Ai~~~~-kal~l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~ 546 (929)
....|+ ........+.. + |...++|.+.++ +.+..+|......+.++.+|..+|++++|+..+.++++.++
T Consensus 135 ~~~~P~-n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~p 213 (987)
T PRK09782 135 LAQQKA-CDAVPTLRCRSEVGQNALRLAQLPVARAQLNDATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNT 213 (987)
T ss_pred HHhCCC-ChhHHHHHHHHhhccchhhhhhHHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCC
Confidence 665555 33333333333 1 333333333333 22222222333444446666666666666666666665555
Q ss_pred -CHhHHHHHHHHHHH-hccHHHHHHHHHHHHhhcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhcc-------
Q 002379 547 -SVDCLELRAWLFIA-ADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRW------- 617 (929)
Q Consensus 547 -~~~~~~~~a~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~------- 617 (929)
+......++.+|.. +++ ++|...++..++ +++ .+...++..+...|+.++|..+++.....
T Consensus 214 l~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk---~d~------~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~ 283 (987)
T PRK09782 214 LSAAERRQWFDVLLAGQLD-DRLLALQSQGIF---TDP------QSRITYATALAYRGEKARLQHYLIENKPLFTTDAQE 283 (987)
T ss_pred CCHHHHHHHHHHHHHhhCH-HHHHHHhchhcc---cCH------HHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCcc
Confidence 33334444555444 244 444444332211 222 22333334444444444443333220000
Q ss_pred ---------------------------------------------------------------------cc-ccccccHH
Q 002379 618 ---------------------------------------------------------------------SS-VDDIGSLA 627 (929)
Q Consensus 618 ---------------------------------------------------------------------~~-~~~~~~l~ 627 (929)
.. .....+..
T Consensus 284 ~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 363 (987)
T PRK09782 284 KSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALR 363 (987)
T ss_pred HHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHH
Confidence 00 00000012
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHh---------------------------------------
Q 002379 628 VINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARN--------------------------------------- 668 (929)
Q Consensus 628 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~--------------------------------------- 668 (929)
......+..|.+...+...+......|++++|...|+.+..
T Consensus 364 ~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 443 (987)
T PRK09782 364 LARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLP 443 (987)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccc
Confidence 22223333455666666666666666666666665555443
Q ss_pred --------------------------cCCc--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Q 002379 669 --------------------------HSSS--EHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADT 720 (929)
Q Consensus 669 --------------------------~~p~--~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~l~~~l~~~ 720 (929)
..|. ++.+|..+|.++.. +++++|+..+.+++...|+......++..+...
T Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~ 522 (987)
T PRK09782 444 LAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQV 522 (987)
T ss_pred cchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 2344 56666777777776 677777777777777777664344455555555
Q ss_pred CCCCCChHHHHHHHHHHhhchhccCc---hhHHHHHHHHHHHHcCCHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHhCC
Q 002379 721 NLDPESSTYVIQLLEEALRCPSDGLR---KGQALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNE 795 (929)
Q Consensus 721 ~~~~~~~~~a~~~~e~Al~~~~~al~---~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~--~~~a~~~la~~~~~~g~ 795 (929)
+ ++++|+..++++.. ....+..+|.++...|++++|+.+|+++++.. ....+..++......|+
T Consensus 523 G-----------r~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr 591 (987)
T PRK09782 523 E-----------DYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQ 591 (987)
T ss_pred C-----------CHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCC
Confidence 5 77888887776643 13567888999999999999999999999884 33445555666666799
Q ss_pred HHHHHHHHHHHHHHccCCHHHHHHHh----hhCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002379 796 LKAAYDEMTKLLEKAQYSASAFEKRS----EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAI 871 (929)
Q Consensus 796 ~~~A~~~~~~al~~~p~~~~~~~~lg----~~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal 871 (929)
+++|+..++++++.+|+ +.++..+| ..|++++|+..|++++.++|+++.++.++|.++...|++++|++.|++++
T Consensus 592 ~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL 670 (987)
T PRK09782 592 PELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAH 670 (987)
T ss_pred HHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999999999999996 88888888 67999999999999999999999999999999999999999999999999
Q ss_pred hcCCCchHHH-HHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHhhhh
Q 002379 872 AFKPDLQMLH-LRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNRARDQAS 925 (929)
Q Consensus 872 ~~~p~~~~~~-~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~l~~~~~ 925 (929)
+.+|+++.++ .+|.++..+|++++|+..|+++++++|++..+..-++.+.....
T Consensus 671 ~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~ 725 (987)
T PRK09782 671 KGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRF 725 (987)
T ss_pred HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHH
Confidence 9999987665 78999999999999999999999999999888887777765554
No 9
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.97 E-value=1.1e-27 Score=286.80 Aligned_cols=392 Identities=18% Similarity=0.136 Sum_probs=305.7
Q ss_pred hHHHHHHhhhh--HHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccC-CHhHHHHHHHHHHHhccH
Q 002379 488 YQERSLYNLGR--EKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDY 564 (929)
Q Consensus 488 ~~~~~l~~~~~--~Ai~~~~kal~l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~~g~~ 564 (929)
..|..++..++ +|+..|+++++++|+ +..|.++|.+|...|++++|+..++++++++| .+..+..+|.++..+|++
T Consensus 132 ~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~ 210 (615)
T TIGR00990 132 EKGNKAYRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKY 210 (615)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCH
Confidence 34555555555 999999999999996 77899999999999999999999999999988 778899999999999999
Q ss_pred HHHHHHHHHHHhhcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhc-----------cccccccccHHHHHHHH
Q 002379 565 ESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDR-----------WSSVDDIGSLAVINQML 633 (929)
Q Consensus 565 ~~A~~~~~~al~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~-----------~~~~~~~~~l~~~~~al 633 (929)
++|+..|..+...++.+..... ..+...... .....+...++.... ............+....
T Consensus 211 ~eA~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~-~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (615)
T TIGR00990 211 ADALLDLTASCIIDGFRNEQSA-----QAVERLLKK-FAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSN 284 (615)
T ss_pred HHHHHHHHHHHHhCCCccHHHH-----HHHHHHHHH-HHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccc
Confidence 9999999888777655441110 001111000 000111111110000 00000000111223333
Q ss_pred hcCCCChHHHHHHHHHHH---HhcCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch
Q 002379 634 INDPGKSFLRFRQSLLLL---RLNCQKAAMRCLRLARNH---SSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF 707 (929)
Q Consensus 634 ~~~p~~~~~~~~lg~~~~---~~g~~~~A~~~l~~al~~---~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~ 707 (929)
+.++.....+..++..+. ..+++++|+..|+++++. .|....++..+|.++...|++++|+..|++++.++|++
T Consensus 285 ~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~ 364 (615)
T TIGR00990 285 ELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRV 364 (615)
T ss_pred ccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 445555555556655443 347899999999999976 47778889999999999999999999999999999876
Q ss_pred HHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC--CCHHHHHH
Q 002379 708 EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI--KHTRAHQG 785 (929)
Q Consensus 708 ~~~~~l~~~l~~~~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~--~~~~a~~~ 785 (929)
..++..+|.++...|++++|+..|+++++. +++.+++.
T Consensus 365 ----------------------------------------~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~ 404 (615)
T TIGR00990 365 ----------------------------------------TQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYH 404 (615)
T ss_pred ----------------------------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 455888999999999999999999999998 56789999
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHh----hhCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHH
Q 002379 786 LARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS----EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEV 861 (929)
Q Consensus 786 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg----~~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~ 861 (929)
+|.++...|++++|+..|+++++.+|++..++..+| ..|++++|+..|+++++..|.++.++..+|.++...|+++
T Consensus 405 lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~ 484 (615)
T TIGR00990 405 RAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFD 484 (615)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHH
Confidence 999999999999999999999999999999999888 6799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCchHH-------HHH-HHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHhhhhh
Q 002379 862 EAVEELSKAIAFKPDLQML-------HLR-AAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNRARDQASH 926 (929)
Q Consensus 862 eA~~~l~kal~~~p~~~~~-------~~l-a~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~l~~~~~~ 926 (929)
+|++.|++++++.|+.... ... +..+...|++++|+..|+++++++|++..++..++++....++
T Consensus 485 ~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~ 557 (615)
T TIGR00990 485 EAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGD 557 (615)
T ss_pred HHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccC
Confidence 9999999999999875321 122 3344457999999999999999999999988888887655443
No 10
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.97 E-value=4e-27 Score=266.29 Aligned_cols=472 Identities=15% Similarity=0.109 Sum_probs=395.5
Q ss_pred HHHHhccc--HHHHHHHHHHHHhcCccccHH--HHHHHHHHhch---HHHHHHHHHhhhccCCCchhhhHHHHHHhhhh-
Q 002379 427 CVMFEREE--YKDACYYFEAAADAGHIYSLA--GLARAKYKVGQ---QYSAYKLINSIISEHKPTGWMYQERSLYNLGR- 498 (929)
Q Consensus 427 ~~~~~~g~--y~~A~~~f~~al~~~~~~~~a--~la~~~~~~g~---a~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~- 498 (929)
..++..|+ ++.|...|..++...|.+.++ |-|++.+++++ +...|+.++...|...+...+..|.+.+..+.
T Consensus 136 ~~~l~~~~~~~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~ 215 (1018)
T KOG2002|consen 136 GFLLLEGDKSMDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMS 215 (1018)
T ss_pred hhhhhcCCccHHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccch
Confidence 33444443 599999999999999999887 66667777766 45556667777777778888888888777666
Q ss_pred -HHHHHHHHHHhcCCCChHHHHHHHHHHHHhC---CHHHHHHHHHHHhcccC-CHhHHHHHHHHHHHhccHHHHHHHHHH
Q 002379 499 -EKIVDLNYASELDPTLSFPYKYRAVAKMEEG---QIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLA 573 (929)
Q Consensus 499 -~Ai~~~~kal~l~P~~~~a~~~~a~~~~~~g---~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~~g~~~~A~~~~~~ 573 (929)
.|+..|++++++||+++.++..+|.+-.... .+..++..+.++...++ +|..+..++..++..|+|+.+......
T Consensus 216 ~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ 295 (1018)
T KOG2002|consen 216 EKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEH 295 (1018)
T ss_pred hhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHH
Confidence 9999999999999999999999998877655 47789999999998888 999999999999999999999999999
Q ss_pred HHhhcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCC-hHHHHHHHHHHHH
Q 002379 574 LLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGK-SFLRFRQSLLLLR 652 (929)
Q Consensus 574 al~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~~p~~-~~~~~~lg~~~~~ 652 (929)
++...-.... ..+..+.+|..+...|++++|..++ .++++.+|++ ...++.+|..|..
T Consensus 296 ai~~t~~~~~---~aes~Y~~gRs~Ha~Gd~ekA~~yY------------------~~s~k~~~d~~~l~~~GlgQm~i~ 354 (1018)
T KOG2002|consen 296 AIKNTENKSI---KAESFYQLGRSYHAQGDFEKAFKYY------------------MESLKADNDNFVLPLVGLGQMYIK 354 (1018)
T ss_pred HHHhhhhhHH---HHHHHHHHHHHHHhhccHHHHHHHH------------------HHHHccCCCCccccccchhHHHHH
Confidence 9986633331 1267889999999999999996665 8999999988 7889999999999
Q ss_pred hcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcC----CHHHHHHHHHHHHhhccch-HHHHHHHHHHHhcCCCCCCh
Q 002379 653 LNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTG----HREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESS 727 (929)
Q Consensus 653 ~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g----~~~eA~~~~~~al~~~p~~-~~~~~l~~~l~~~~~~~~~~ 727 (929)
.|+++.|+.+|++.++..|++.+....+|.+|...+ ..+.|..+..++++..|.+ ++|..++..+.... .
T Consensus 355 ~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d-----~ 429 (1018)
T KOG2002|consen 355 RGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTD-----P 429 (1018)
T ss_pred hchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcC-----h
Confidence 999999999999999999999999999999999886 6789999999999999999 99999999987654 3
Q ss_pred HHHHHHHHHHhhchhccCc--hhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC-----CCH-------HHHHHHHHHHHHh
Q 002379 728 TYVIQLLEEALRCPSDGLR--KGQALNNLGSIYVECGKLDQAENCYINALDI-----KHT-------RAHQGLARVYYLK 793 (929)
Q Consensus 728 ~~a~~~~e~Al~~~~~al~--~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~-----~~~-------~a~~~la~~~~~~ 793 (929)
...+..|..|+..+...-. |.+.++++|..++..|++.+|...|..|+.. +.. ...+++|+++...
T Consensus 430 ~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l 509 (1018)
T KOG2002|consen 430 WASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEEL 509 (1018)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhh
Confidence 3446677788776665533 5799999999999999999999999999877 111 2489999999999
Q ss_pred CCHHHHHHHHHHHHHHccCCHHHHHHHh----hhCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHH
Q 002379 794 NELKAAYDEMTKLLEKAQYSASAFEKRS----EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSK 869 (929)
Q Consensus 794 g~~~~A~~~~~~al~~~p~~~~~~~~lg----~~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~k 869 (929)
++++.|.+.|..++..+|...++|..+| ..++..+|...+..++..+..++.++..+|..++...++..|.+-|+.
T Consensus 510 ~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~ 589 (1018)
T KOG2002|consen 510 HDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFET 589 (1018)
T ss_pred hhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHH
Confidence 9999999999999999999999999998 347889999999999999999999999999999999999999888877
Q ss_pred HHhcCCCch---HHHHHHHHHHH------------cCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHhhh
Q 002379 870 AIAFKPDLQ---MLHLRAAFYES------------IGDLTSAIRDSQAALCLDPNHMETLDLYNRARDQA 924 (929)
Q Consensus 870 al~~~p~~~---~~~~la~~~~~------------~g~~~~A~~~~~~al~l~P~~~~a~~~~~~l~~~~ 924 (929)
+++.-...+ ....+|.+|.+ .+.+++|++.|.++|..+|.|.-+.+..+.+....
T Consensus 590 i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~k 659 (1018)
T KOG2002|consen 590 ILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEK 659 (1018)
T ss_pred HHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhc
Confidence 776543332 22255766653 35678899999999999998888777776665433
No 11
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.96 E-value=5.1e-26 Score=257.40 Aligned_cols=456 Identities=15% Similarity=0.092 Sum_probs=327.5
Q ss_pred cHHHHHHHHHHHHhcCccccHH--HHHHHHHHhchHHHHHHHHHhhhccC-----CCchhhhHHHHHHhhhh--HHHHHH
Q 002379 434 EYKDACYYFEAAADAGHIYSLA--GLARAKYKVGQQYSAYKLINSIISEH-----KPTGWMYQERSLYNLGR--EKIVDL 504 (929)
Q Consensus 434 ~y~~A~~~f~~al~~~~~~~~a--~la~~~~~~g~a~~a~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~--~Ai~~~ 504 (929)
.|..|...+.++..+++.+..+ .++.-++-.|+.......+...+... ...+++..|+++...|+ +|...|
T Consensus 251 s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY 330 (1018)
T KOG2002|consen 251 SYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYY 330 (1018)
T ss_pred HHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence 3555566666666665555554 44555555555444444333332221 12345555555555555 566666
Q ss_pred HHHHhcCCCC-hHHHHHHHHHHHHhCCHHHHHHHHHHHhcccC-CHhHHHHHHHHHHHhc----cHHHHHHHHHHHHhhc
Q 002379 505 NYASELDPTL-SFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAAD----DYESALRDTLALLALE 578 (929)
Q Consensus 505 ~kal~l~P~~-~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~~g----~~~~A~~~~~~al~~~ 578 (929)
.+++..+|++ ..+++.+|..++..|+++.|+.+|++++...| +.+....+|.+|...+ ..+.|.....++++..
T Consensus 331 ~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~ 410 (1018)
T KOG2002|consen 331 MESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT 410 (1018)
T ss_pred HHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc
Confidence 6666666655 55566666666666666666666666665555 4555555555555443 4455556666666665
Q ss_pred CCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhc-----CCCChHHHHHHHHHHHHh
Q 002379 579 SNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLIN-----DPGKSFLRFRQSLLLLRL 653 (929)
Q Consensus 579 p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~-----~p~~~~~~~~lg~~~~~~ 653 (929)
|.+. +++..++.++.....|. ++..|..++.. .+--+..+.++|..++..
T Consensus 411 ~~d~------~a~l~laql~e~~d~~~-------------------sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~ 465 (1018)
T KOG2002|consen 411 PVDS------EAWLELAQLLEQTDPWA-------------------SLDAYGNALDILESKGKQIPPEVLNNVASLHFRL 465 (1018)
T ss_pred cccH------HHHHHHHHHHHhcChHH-------------------HHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHh
Confidence 5555 44444555554433322 24445666532 344567889999999999
Q ss_pred cCHHHHHHHHHHHHhc-----CCch-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch-HHHHHHHHHHHhcCC
Q 002379 654 NCQKAAMRCLRLARNH-----SSSE-----HERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNL 722 (929)
Q Consensus 654 g~~~~A~~~l~~al~~-----~p~~-----~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~~~~~l~~~l~~~~~ 722 (929)
|++++|...|..|+.. +++. ....+++|.++...++++.|...|..+++..|.+ +++..++......+
T Consensus 466 g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~- 544 (1018)
T KOG2002|consen 466 GNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKN- 544 (1018)
T ss_pred cChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhcc-
Confidence 9999999999999876 2222 2347899999999999999999999999999999 88888874443444
Q ss_pred CCCChHHHHHHHHHHhhchhccCc----hhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHH--
Q 002379 723 DPESSTYVIQLLEEALRCPSDGLR----KGQALNNLGSIYVECGKLDQAENCYINALDI----KHTRAHQGLARVYYL-- 792 (929)
Q Consensus 723 ~~~~~~~a~~~~e~Al~~~~~al~----~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~----~~~~a~~~la~~~~~-- 792 (929)
...+|...+..+++ .+.++..+|..++...++..|.+-|+..++. .++.+...||++++.
T Consensus 545 ----------~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l 614 (1018)
T KOG2002|consen 545 ----------NLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQAL 614 (1018)
T ss_pred ----------CcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHh
Confidence 45566666666644 3588999999999999999999988877766 456788889997764
Q ss_pred ----------hCCHHHHHHHHHHHHHHccCCHHHHHHHh----hhCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcC
Q 002379 793 ----------KNELKAAYDEMTKLLEKAQYSASAFEKRS----EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQ 858 (929)
Q Consensus 793 ----------~g~~~~A~~~~~~al~~~p~~~~~~~~lg----~~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g 858 (929)
.+.+++|++.|.+++..+|.|..+-..+| ..|++.+|+..|.++.+-..+++.+|.++|.+|..+|
T Consensus 615 ~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~ 694 (1018)
T KOG2002|consen 615 HNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQG 694 (1018)
T ss_pred cccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHH
Confidence 35578999999999999999988877766 7799999999999999888889999999999999999
Q ss_pred CHHHHHHHHHHHHhcCC---CchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHhhhh
Q 002379 859 KEVEAVEELSKAIAFKP---DLQMLHLRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNRARDQAS 925 (929)
Q Consensus 859 ~~~eA~~~l~kal~~~p---~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~l~~~~~ 925 (929)
+|..|++.|+.+++..- +....+.+|.+++..|.+.+|.+...+|+.+.|.++.+..+++.+..+..
T Consensus 695 qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla 764 (1018)
T KOG2002|consen 695 QYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLA 764 (1018)
T ss_pred HHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHH
Confidence 99999999999997643 33567789999999999999999999999999999999999988776554
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.96 E-value=5e-25 Score=267.99 Aligned_cols=498 Identities=12% Similarity=-0.002 Sum_probs=359.1
Q ss_pred HHHHHHHhhHHHHhcccHHHHHHHHHHHHhcCccccHH--HHHHHHHHhchHHHHHHHHHhhhccCCCchhhhHHHHHHh
Q 002379 418 RMLALHQLGCVMFEREEYKDACYYFEAAADAGHIYSLA--GLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYN 495 (929)
Q Consensus 418 ~a~~~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~~~a--~la~~~~~~g~a~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 495 (929)
....+|..|..+...|++++|+..|+++++++|.+..+ .+++.|...|+..++...+.+.+...+...+++.....+.
T Consensus 43 ~~~~~f~~a~~~~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i~ 122 (987)
T PRK09782 43 VIYPRLDKALKAQKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAIP 122 (987)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHhc
Confidence 45567888888899999999999999999999999655 8888999999876666666655555445666666556666
Q ss_pred hhhHHHHHHHHHHhcCCCChHHHHHHHHH--------HHHhCCHHHHHHHHHHHhcccCCHhH-HHHHHHHHHHhccHHH
Q 002379 496 LGREKIVDLNYASELDPTLSFPYKYRAVA--------KMEEGQIRAAISEIDRIIVFKLSVDC-LELRAWLFIAADDYES 566 (929)
Q Consensus 496 ~~~~Ai~~~~kal~l~P~~~~a~~~~a~~--------~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~a~~~~~~g~~~~ 566 (929)
...+|+..|++.++.+|++..+++.++.. |.+.++..+|+. .+.+..+|.+.. ...++.+|..+|++++
T Consensus 123 ~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~ 200 (987)
T PRK09782 123 VEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQ 200 (987)
T ss_pred cChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHH
Confidence 66699999999999999999999999998 777777777776 555544434444 4455999999999999
Q ss_pred HHHHHHHHHhhcCCchhhhccccHHHHHHHHHHh-hcccchHHHHHHhhhcccc----------ccccccHHHHHHHH--
Q 002379 567 ALRDTLALLALESNYMMFHGRVSGDHLVKLLNHH-VRSWSPADCWIKLYDRWSS----------VDDIGSLAVINQML-- 633 (929)
Q Consensus 567 A~~~~~~al~~~p~~~~~~~~~~a~~ll~~~~~~-~~~~~~A~~~l~l~~~~~~----------~~~~~~l~~~~~al-- 633 (929)
|+..+.++++..|.+. .....++.+|.. .++ +.+..+.+-... .. .-..+......+.+
T Consensus 201 Ai~lL~~L~k~~pl~~------~~~~~L~~ay~q~l~~-~~a~al~~~~lk-~d~~l~~ala~~yi~~G~~~~A~~~L~~ 272 (987)
T PRK09782 201 ADTLYNEARQQNTLSA------AERRQWFDVLLAGQLD-DRLLALQSQGIF-TDPQSRITYATALAYRGEKARLQHYLIE 272 (987)
T ss_pred HHHHHHHHHhcCCCCH------HHHHHHHHHHHHhhCH-HHHHHHhchhcc-cCHHHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 9999999999999988 555556667666 344 444333211000 00 00000000111111
Q ss_pred -----hcCCCChHHHHHH-----------------------------HHHHHHh--------------------------
Q 002379 634 -----INDPGKSFLRFRQ-----------------------------SLLLLRL-------------------------- 653 (929)
Q Consensus 634 -----~~~p~~~~~~~~l-----------------------------g~~~~~~-------------------------- 653 (929)
..+|.+...++.+ ...+...
T Consensus 273 ~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 352 (987)
T PRK09782 273 NKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVS 352 (987)
T ss_pred CcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhc
Confidence 1112222211111 1222222
Q ss_pred ---cCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch----HHHHHHHHHHHhcCC----
Q 002379 654 ---NCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF----EAFFLKAYILADTNL---- 722 (929)
Q Consensus 654 ---g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~----~~~~~l~~~l~~~~~---- 722 (929)
+.+.+|...++...+..|.+...+..++....+.|++++|...|++++...++- .....++..+.....
T Consensus 353 ~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 432 (987)
T PRK09782 353 VATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATP 432 (987)
T ss_pred cccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccch
Confidence 444555555555566668888999999999999999999999999998853322 122244444443321
Q ss_pred --------------------------------------CCC--ChH--HH------HHHHHHHhhchhccCc--hh-HHH
Q 002379 723 --------------------------------------DPE--SST--YV------IQLLEEALRCPSDGLR--KG-QAL 751 (929)
Q Consensus 723 --------------------------------------~~~--~~~--~a------~~~~e~Al~~~~~al~--~~-~a~ 751 (929)
.+. ... .. .+..++|+..+.+++. |. ...
T Consensus 433 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~~~~~eAi~a~~~Al~~~Pd~~~~ 512 (987)
T PRK09782 433 AKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRDTLPGVALYAWLQAEQRQPDAWQH 512 (987)
T ss_pred HHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHhCCcHHHHHHHHHHHHhCCchHHH
Confidence 000 000 00 0122344444444422 21 234
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHh-hh---CCH
Q 002379 752 NNLGSIYVECGKLDQAENCYINALDI-KHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS-EY---SDR 826 (929)
Q Consensus 752 ~~lg~~~~~~g~~~eA~~~~~~al~~-~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg-~~---g~~ 826 (929)
..+|.++...|++++|+..|++++.. .....+..+|.++...|++++|...++++++..|++...+..++ .. |++
T Consensus 513 L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~ 592 (987)
T PRK09782 513 RAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQP 592 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCH
Confidence 44566667899999999999998776 34456888999999999999999999999999999887776665 44 999
Q ss_pred HHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHH-HHHHHHHHcCCHHHHHHHHHHHhc
Q 002379 827 EMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLH-LRAAFYESIGDLTSAIRDSQAALC 905 (929)
Q Consensus 827 ~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~-~la~~~~~~g~~~~A~~~~~~al~ 905 (929)
++|+..|+++++++|+ +.++.++|.++.+.|++++|+..|+++++++|+++.++ .+|.++...|++++|+..|+++++
T Consensus 593 ~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~ 671 (987)
T PRK09782 593 ELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHK 671 (987)
T ss_pred HHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999996 99999999999999999999999999999999998766 779999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHhhhhh
Q 002379 906 LDPNHMETLDLYNRARDQASH 926 (929)
Q Consensus 906 l~P~~~~a~~~~~~l~~~~~~ 926 (929)
++|++++++..++.+.....+
T Consensus 672 l~P~~~~a~~nLA~al~~lGd 692 (987)
T PRK09782 672 GLPDDPALIRQLAYVNQRLDD 692 (987)
T ss_pred hCCCCHHHHHHHHHHHHHCCC
Confidence 999999999999988766544
No 13
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=6.1e-25 Score=231.11 Aligned_cols=424 Identities=13% Similarity=0.101 Sum_probs=307.8
Q ss_pred HHHHHHHHhhHHHHhcccHHHHHHHHHHHHhcCccccHHHHHHHHHHhchHHHHHHHHHhhhccCCCchhhhHHHHHHhh
Q 002379 417 QRMLALHQLGCVMFEREEYKDACYYFEAAADAGHIYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNL 496 (929)
Q Consensus 417 ~~a~~~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~~~a~la~~~~~~g~a~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 496 (929)
..+..+-..|+.+++.|+|++||++|..||+..|+-.. .|.++...+..++ +
T Consensus 113 k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epi-----FYsNraAcY~~lg-----------------------d 164 (606)
T KOG0547|consen 113 KYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPI-----FYSNRAACYESLG-----------------------D 164 (606)
T ss_pred HHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCch-----hhhhHHHHHHHHh-----------------------h
Confidence 45778889999999999999999999999999998655 4555555555444 4
Q ss_pred hhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccC--CHhHHHHHHHHHHHhccHHHH-------
Q 002379 497 GREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL--SVDCLELRAWLFIAADDYESA------- 567 (929)
Q Consensus 497 ~~~Ai~~~~kal~l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~a~~~~~~g~~~~A------- 567 (929)
.++-+++..++++++|+...+++.|+.++...|++++|+....-.--+.. +.......-..+-.++ ...+
T Consensus 165 ~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a-~~ka~e~~k~n 243 (606)
T KOG0547|consen 165 WEKVIEDCTKALELNPDYVKALLRRASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQA-MKKAKEKLKEN 243 (606)
T ss_pred HHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHH-HHHHHHhhccc
Confidence 44677788999999999999999999999999999999877654321111 1111110111111111 0111
Q ss_pred ----------HHHHHHHHhhcCCchhhhccccHHHHHHHHH-----HhhcccchHHHHHHhhhccccccccccHHHHHHH
Q 002379 568 ----------LRDTLALLALESNYMMFHGRVSGDHLVKLLN-----HHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQM 632 (929)
Q Consensus 568 ----------~~~~~~al~~~p~~~~~~~~~~a~~ll~~~~-----~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~a 632 (929)
+..|-..+.-+|........-.+...+...+ .....|.+|...+.... ..+...
T Consensus 244 r~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~-----------~~~~~~ 312 (606)
T KOG0547|consen 244 RPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEEC-----------LGSESS 312 (606)
T ss_pred CCCCCCcHHHHHHHHhhccccccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHh-----------hhhhhh
Confidence 1112122211111110000000111111111 00112222222220000 000000
Q ss_pred HhcC------CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccc
Q 002379 633 LIND------PGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERT 706 (929)
Q Consensus 633 l~~~------p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~ 706 (929)
+..+ ..-+.++...|..++-.|++..|...|++++.++|.+...|..+|.+|.+.++.++-...|.+|..++|+
T Consensus 313 ~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~ 392 (606)
T KOG0547|consen 313 LSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE 392 (606)
T ss_pred ccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC
Confidence 0001 0125677888999999999999999999999999999999999999999999999999999999999998
Q ss_pred hHHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcCC--CHHHHH
Q 002379 707 FEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQ 784 (929)
Q Consensus 707 ~~~~~~l~~~l~~~~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~--~~~a~~ 784 (929)
+ +.+|+..|.+++-.+++++|+..|++++.++ +..++.
T Consensus 393 n----------------------------------------~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~i 432 (606)
T KOG0547|consen 393 N----------------------------------------PDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYI 432 (606)
T ss_pred C----------------------------------------CchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHH
Confidence 8 6678889999999999999999999999995 446788
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHh----hhCCHHHHHHHHHHHHhcCCC------CcHHHHHHHHHH
Q 002379 785 GLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS----EYSDREMAKNDLNMATQLDPL------RTYPYRYRAAVL 854 (929)
Q Consensus 785 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg----~~g~~~~A~~~~~~al~l~p~------~~~~~~~la~~~ 854 (929)
.++.+.+++++++++...|+.++...|+.++.|...+ ..+++++|++.|.+++.+.|. ++.++...|.+.
T Consensus 433 Ql~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~ 512 (606)
T KOG0547|consen 433 QLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLV 512 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhh
Confidence 9999999999999999999999999999999888777 568999999999999999998 777777777655
Q ss_pred Hh-cCCHHHHHHHHHHHHhcCCCchHHH-HHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHH
Q 002379 855 MD-DQKEVEAVEELSKAIAFKPDLQMLH-LRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNRA 920 (929)
Q Consensus 855 ~~-~g~~~eA~~~l~kal~~~p~~~~~~-~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~l 920 (929)
.+ .+++.+|+..+++|++++|.....+ .+|.+..++|+.++|+++|+++..+.-.-.+....+.-.
T Consensus 513 ~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lArt~~E~~~a~s~a 580 (606)
T KOG0547|consen 513 LQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLARTESEMVHAYSLA 580 (606)
T ss_pred hchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 44 4689999999999999999998777 789999999999999999999999877777666655443
No 14
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.95 E-value=2.6e-25 Score=265.42 Aligned_cols=328 Identities=13% Similarity=0.049 Sum_probs=181.2
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHhcccC-CHhHHHHHHHHHHHhccHHHHHHHHHHHHhhcCCchhhhccccHHHHHHHH
Q 002379 519 KYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLL 597 (929)
Q Consensus 519 ~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~ll~~~ 597 (929)
...+..+.+.|++++|...++.++...| +++.++.+|.+....|++++|+..|+++++.+|++. .++..++.+
T Consensus 46 ~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~------~a~~~la~~ 119 (656)
T PRK15174 46 ILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQP------EDVLLVASV 119 (656)
T ss_pred HHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCCh------HHHHHHHHH
Confidence 3334445555555555555555555555 444555555555555555555555555555555555 444555555
Q ss_pred HHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHH
Q 002379 598 NHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERL 677 (929)
Q Consensus 598 ~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~ 677 (929)
+...|++++|...+ .++++.+|+++.++..++.++...|++++|+..+++++...|+++.++
T Consensus 120 l~~~g~~~~Ai~~l------------------~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~ 181 (656)
T PRK15174 120 LLKSKQYATVADLA------------------EQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMI 181 (656)
T ss_pred HHHcCCHHHHHHHH------------------HHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHH
Confidence 55555555553333 555555555555555555555555555555555555555555555544
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHH
Q 002379 678 VYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSI 757 (929)
Q Consensus 678 ~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~l~~~l~~~~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~ 757 (929)
..++ .+...|++++|+..+++++..+|.. .......++.+
T Consensus 182 ~~~~-~l~~~g~~~eA~~~~~~~l~~~~~~---------------------------------------~~~~~~~l~~~ 221 (656)
T PRK15174 182 ATCL-SFLNKSRLPEDHDLARALLPFFALE---------------------------------------RQESAGLAVDT 221 (656)
T ss_pred HHHH-HHHHcCCHHHHHHHHHHHHhcCCCc---------------------------------------chhHHHHHHHH
Confidence 4432 2455555555555555555544321 00112233445
Q ss_pred HHHcCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHhCCHHH----HHHHHHHHHHHccCCHHHHHHHh----hhCCHH
Q 002379 758 YVECGKLDQAENCYINALDI--KHTRAHQGLARVYYLKNELKA----AYDEMTKLLEKAQYSASAFEKRS----EYSDRE 827 (929)
Q Consensus 758 ~~~~g~~~eA~~~~~~al~~--~~~~a~~~la~~~~~~g~~~~----A~~~~~~al~~~p~~~~~~~~lg----~~g~~~ 827 (929)
+...|++++|+..|+++++. +++.++..+|.++...|++++ |+..++++++.+|++..++..+| ..|+++
T Consensus 222 l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~ 301 (656)
T PRK15174 222 LCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNE 301 (656)
T ss_pred HHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHH
Confidence 55556666666666666655 344555566666666666553 56666666666666666555555 345666
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHH-HHHHHHHHcCCHHHHHHHHHHHhcc
Q 002379 828 MAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLH-LRAAFYESIGDLTSAIRDSQAALCL 906 (929)
Q Consensus 828 ~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~-~la~~~~~~g~~~~A~~~~~~al~l 906 (929)
+|+..++++++++|+++.++..+|.++...|++++|+..|++++..+|+...++ .+|.++...|++++|+..|+++++.
T Consensus 302 eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 302 KAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 666666666666666666666666666666666666666666666666554433 2355566666666666666666666
Q ss_pred CCCC
Q 002379 907 DPNH 910 (929)
Q Consensus 907 ~P~~ 910 (929)
+|++
T Consensus 382 ~P~~ 385 (656)
T PRK15174 382 RASH 385 (656)
T ss_pred Chhh
Confidence 5553
No 15
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.95 E-value=5.9e-25 Score=262.38 Aligned_cols=316 Identities=12% Similarity=0.026 Sum_probs=283.6
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccC-CHhHHHHHHHHHHHhccHHHHHHHHHHHHh
Q 002379 498 REKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLALLA 576 (929)
Q Consensus 498 ~~Ai~~~~kal~l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~~g~~~~A~~~~~~al~ 576 (929)
.+|...++..+...|+++.+++.+|.+....|++++|+..|++++..+| ++..+..+|.++...|++++|+..|+++++
T Consensus 59 ~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~ 138 (656)
T PRK15174 59 DVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWL 138 (656)
T ss_pred chhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3899999999999999999999999999999999999999999999998 888899999999999999999999999999
Q ss_pred hcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHHHHhcCH
Q 002379 577 LESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQ 656 (929)
Q Consensus 577 ~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~lg~~~~~~g~~ 656 (929)
++|++. .++..++.++...|++++|...+ .+++...|+++.++...+ .+...|++
T Consensus 139 l~P~~~------~a~~~la~~l~~~g~~~eA~~~~------------------~~~~~~~P~~~~a~~~~~-~l~~~g~~ 193 (656)
T PRK15174 139 AFSGNS------QIFALHLRTLVLMDKELQAISLA------------------RTQAQEVPPRGDMIATCL-SFLNKSRL 193 (656)
T ss_pred hCCCcH------HHHHHHHHHHHHCCChHHHHHHH------------------HHHHHhCCCCHHHHHHHH-HHHHcCCH
Confidence 999998 77778999999999999995555 888889999988887764 48889999
Q ss_pred HHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHHHHHhcCCCCCChHHHHHHHH
Q 002379 657 KAAMRCLRLARNHSSS-EHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLE 735 (929)
Q Consensus 657 ~~A~~~l~~al~~~p~-~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~l~~~l~~~~~~~~~~~~a~~~~e 735 (929)
++|+..++++++.+|. .......++.++...|++++|+..|+++++.+|++
T Consensus 194 ~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~---------------------------- 245 (656)
T PRK15174 194 PEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDG---------------------------- 245 (656)
T ss_pred HHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC----------------------------
Confidence 9999999999998763 34445667889999999999999999999998877
Q ss_pred HHhhchhccCchhHHHHHHHHHHHHcCCHHH----HHHHHHHHHcC--CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 002379 736 EALRCPSDGLRKGQALNNLGSIYVECGKLDQ----AENCYINALDI--KHTRAHQGLARVYYLKNELKAAYDEMTKLLEK 809 (929)
Q Consensus 736 ~Al~~~~~al~~~~a~~~lg~~~~~~g~~~e----A~~~~~~al~~--~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~ 809 (929)
..++.++|.++...|++++ |+..|+++++. +++.++..+|.++...|++++|+..+++++..
T Consensus 246 ------------~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l 313 (656)
T PRK15174 246 ------------AALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT 313 (656)
T ss_pred ------------HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 4557788888888999885 89999999998 55678999999999999999999999999999
Q ss_pred ccCCHHHHHHHh----hhCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCch
Q 002379 810 AQYSASAFEKRS----EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQ 878 (929)
Q Consensus 810 ~p~~~~~~~~lg----~~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~ 878 (929)
+|+++.++..+| ..|++++|+..|++++..+|.....+..+|.++...|++++|+..|+++++.+|++.
T Consensus 314 ~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 314 HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 999999888887 679999999999999999998888788889999999999999999999999999874
No 16
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.95 E-value=2e-24 Score=263.24 Aligned_cols=389 Identities=12% Similarity=-0.013 Sum_probs=322.1
Q ss_pred hhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccC-CHhHHHHHHHHHHHhccHHHHHHHHHHH
Q 002379 496 LGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLAL 574 (929)
Q Consensus 496 ~~~~Ai~~~~kal~l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~~g~~~~A~~~~~~a 574 (929)
..++|+..+.++...+|..+.++..+|.++...|++++|+..++++++..| +++.+..++.++...|++++|+..++++
T Consensus 30 ~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~ 109 (765)
T PRK10049 30 QDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQL 109 (765)
T ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 445899999999999999999999999999999999999999999999988 7888999999999999999999999999
Q ss_pred HhhcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHHHHhc
Q 002379 575 LALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLN 654 (929)
Q Consensus 575 l~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~lg~~~~~~g 654 (929)
++..|++. . +..++.++...|++++|+..+ +++++.+|+++.++..++.++...+
T Consensus 110 l~~~P~~~------~-~~~la~~l~~~g~~~~Al~~l------------------~~al~~~P~~~~~~~~la~~l~~~~ 164 (765)
T PRK10049 110 VSGAPDKA------N-LLALAYVYKRAGRHWDELRAM------------------TQALPRAPQTQQYPTEYVQALRNNR 164 (765)
T ss_pred HHhCCCCH------H-HHHHHHHHHHCCCHHHHHHHH------------------HHHHHhCCCCHHHHHHHHHHHHHCC
Confidence 99999999 7 778999999999999995555 9999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCchHH-----HHHHHHHHHH-----HcCCH---HHHHHHHHHHHhhc---cch-H----HHHHH
Q 002379 655 CQKAAMRCLRLARNHSSSEHE-----RLVYEGWILY-----DTGHR---EEALSRAEKSISIE---RTF-E----AFFLK 713 (929)
Q Consensus 655 ~~~~A~~~l~~al~~~p~~~~-----~~~~lg~~~~-----~~g~~---~eA~~~~~~al~~~---p~~-~----~~~~l 713 (929)
..++|+..++++.. .|+... ....+..+.. ..+++ ++|++.++++++.. |+. . +....
T Consensus 165 ~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~ 243 (765)
T PRK10049 165 LSAPALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDR 243 (765)
T ss_pred ChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHH
Confidence 99999999998776 554311 1122222222 23345 78999999999764 332 1 11111
Q ss_pred HHHHHhcCCCCCChHHHHHHHHHHhhchhccCc-----hhHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCC------HHH
Q 002379 714 AYILADTNLDPESSTYVIQLLEEALRCPSDGLR-----KGQALNNLGSIYVECGKLDQAENCYINALDIKH------TRA 782 (929)
Q Consensus 714 ~~~l~~~~~~~~~~~~a~~~~e~Al~~~~~al~-----~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~------~~a 782 (929)
...+...+ ++++|+..|++.+. |..+...+|.+|...|++++|+..|+++++.++ ...
T Consensus 244 l~~Ll~~g-----------~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~ 312 (765)
T PRK10049 244 LGALLARD-----------RYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEE 312 (765)
T ss_pred HHHHHHhh-----------hHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHH
Confidence 22233334 67777777777754 334555579999999999999999999988742 246
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHccCC---------------HHHHHHHh----hhCCHHHHHHHHHHHHhcCCCC
Q 002379 783 HQGLARVYYLKNELKAAYDEMTKLLEKAQYS---------------ASAFEKRS----EYSDREMAKNDLNMATQLDPLR 843 (929)
Q Consensus 783 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~lg----~~g~~~~A~~~~~~al~l~p~~ 843 (929)
...++.++...|++++|+..++++....|.. ..++..++ ..|++++|+..+++++...|.+
T Consensus 313 ~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n 392 (765)
T PRK10049 313 LADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGN 392 (765)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 7778888999999999999999999987632 22444444 6799999999999999999999
Q ss_pred cHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHH-HHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 002379 844 TYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLH-LRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNRAR 921 (929)
Q Consensus 844 ~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~-~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~l~ 921 (929)
+.++..+|.++...|++++|++.++++++++|++..+. .+|.++...|++++|...++++++.+|+++.+..+....+
T Consensus 393 ~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~~~~~~~ 471 (765)
T PRK10049 393 QGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQRLARARD 471 (765)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999997666 6799999999999999999999999999998877665543
No 17
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.93 E-value=8.8e-23 Score=248.95 Aligned_cols=394 Identities=12% Similarity=-0.012 Sum_probs=310.3
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccC-CHhHHHHHHHHHHHhccHHHHHHHHHHHHhhcCCc
Q 002379 503 DLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLALLALESNY 581 (929)
Q Consensus 503 ~~~kal~l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~ 581 (929)
.++. -...|-++.-......+....|++++|+..+.++....+ ....+..+|.++...|++++|+..|+++++.+|++
T Consensus 4 ~~~~-~~~~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~ 82 (765)
T PRK10049 4 WLRQ-ALKSALSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQN 82 (765)
T ss_pred hhhh-hhccCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 3444 334555666666667788899999999999999987565 55568999999999999999999999999999999
Q ss_pred hhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHH
Q 002379 582 MMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMR 661 (929)
Q Consensus 582 ~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 661 (929)
+ .+...++.++...|++++|...+ +++++.+|+++. +..+|.++...|++++|+.
T Consensus 83 ~------~a~~~la~~l~~~g~~~eA~~~l------------------~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~ 137 (765)
T PRK10049 83 D------DYQRGLILTLADAGQYDEALVKA------------------KQLVSGAPDKAN-LLALAYVYKRAGRHWDELR 137 (765)
T ss_pred H------HHHHHHHHHHHHCCCHHHHHHHH------------------HHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHH
Confidence 8 67778999999999999996666 999999999999 9999999999999999999
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch-HHH-HHHHHHHHhcCCCCCC-----h---HHHH
Q 002379 662 CLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAF-FLKAYILADTNLDPES-----S---TYVI 731 (929)
Q Consensus 662 ~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~~~-~~l~~~l~~~~~~~~~-----~---~~a~ 731 (929)
.++++++..|+++.++..+|.++...|..++|+..++++.. .|+. ... ................ . ..++
T Consensus 138 ~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al 216 (765)
T PRK10049 138 AMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRAL 216 (765)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHH
Confidence 99999999999999999999999999999999999998887 6543 110 0011111111111111 1 2233
Q ss_pred HHHHHHhhchhccCch----hHHHHHHHHHHHHcCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHHhCCHHHHHHHHH
Q 002379 732 QLLEEALRCPSDGLRK----GQALNNLGSIYVECGKLDQAENCYINALDIK---HTRAHQGLARVYYLKNELKAAYDEMT 804 (929)
Q Consensus 732 ~~~e~Al~~~~~al~~----~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~---~~~a~~~la~~~~~~g~~~~A~~~~~ 804 (929)
..++.+++.+.+.... ..+......++...|++++|+..|+++++.. +..+...+|.+|...|++++|+..|+
T Consensus 217 ~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~ 296 (765)
T PRK10049 217 AQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILT 296 (765)
T ss_pred HHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 3444444332222111 1233332334467899999999999999884 44566668999999999999999999
Q ss_pred HHHHHccCCH----HHHHHH----hhhCCHHHHHHHHHHHHhcCCCC---------------cHHHHHHHHHHHhcCCHH
Q 002379 805 KLLEKAQYSA----SAFEKR----SEYSDREMAKNDLNMATQLDPLR---------------TYPYRYRAAVLMDDQKEV 861 (929)
Q Consensus 805 ~al~~~p~~~----~~~~~l----g~~g~~~~A~~~~~~al~l~p~~---------------~~~~~~la~~~~~~g~~~ 861 (929)
++++..|.+. .....+ ...|++++|+..++++...+|.. ..++..+|.++...|+++
T Consensus 297 ~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~ 376 (765)
T PRK10049 297 ELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLP 376 (765)
T ss_pred HHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHH
Confidence 9998887652 222222 26799999999999999987732 346788999999999999
Q ss_pred HHHHHHHHHHhcCCCchHHH-HHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHhh
Q 002379 862 EAVEELSKAIAFKPDLQMLH-LRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNRARDQ 923 (929)
Q Consensus 862 eA~~~l~kal~~~p~~~~~~-~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~l~~~ 923 (929)
+|++.+++++...|+++.++ .+|.++...|++++|++.++++++++|++..++..++.+...
T Consensus 377 eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~ 439 (765)
T PRK10049 377 QAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALD 439 (765)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH
Confidence 99999999999999998666 679999999999999999999999999998888777765443
No 18
>PHA02790 Kelch-like protein; Provisional
Probab=99.93 E-value=2.1e-26 Score=265.06 Aligned_cols=146 Identities=13% Similarity=0.120 Sum_probs=133.0
Q ss_pred CCCCCC-EEEEEcCeEEEeehhHHhccCHHHHHHhcCCCCcCCCCeeEecCCCCCHHHHHHHhhhHccCCCCCCChhHHH
Q 002379 214 LEEDDS-VTFCVRDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFCPGIVL 292 (929)
Q Consensus 214 ~~~~~~-v~~~v~~~~~~~hr~iLaa~S~~F~~mf~~~~~e~~~~~i~~~~~~~~~~~~~~~l~~~Yt~~~~~~~~~~~~ 292 (929)
.....+ |++++ |++|+|||+|||++||||++||+++|+|+.+ +|++...++++++|+.+|+|+|||++. ++.++|+
T Consensus 18 ~~~~~~~~~~~~-~~~~~~HR~VLAa~S~YFraMF~~~~~Es~~-~v~~~~~~v~~~~l~~lldy~YTg~l~-it~~nV~ 94 (480)
T PHA02790 18 MTKKFKTIIEAI-GGNIIVNSTILKKLSPYFRTHLRQKYTKNKD-PVTRVCLDLDIHSLTSIVIYSYTGKVY-IDSHNVV 94 (480)
T ss_pred hhhhhceEEEEc-CcEEeeehhhhhhcCHHHHHHhcCCcccccc-ceEEEecCcCHHHHHHHHHhheeeeEE-EecccHH
Confidence 344455 76655 5699999999999999999999999999965 566521389999999999999999999 9999999
Q ss_pred HHHHHhchhChHhHHHHHHHHHHhhcCChhhHHHHHHHHHHhChHHHHHHHHHHHHhchhhhcCc--cchhhh
Q 002379 293 ELLSFANRFCCEEMKSACDAHLASLVGDIEDALILIDYGLEERATLLVASCLQVLLRELPSSLYN--PKVMKI 363 (929)
Q Consensus 293 ~ll~~A~~~~~~~l~~~C~~~l~~~~~~~~n~~~~~~~a~~~~~~~L~~~c~~~i~~~~~~v~~~--~~f~~L 363 (929)
+||.+|++||++.+++.|++||.+.|+ ++||+.++.+|+.|+|++|.+.|.+||.+||.++.++ ++|..|
T Consensus 95 ~ll~aA~~Lqi~~v~~~C~~fL~~~l~-~~NCl~i~~~A~~y~~~~L~~~a~~fi~~nF~~v~~~~~~ef~~L 166 (480)
T PHA02790 95 NLLRASILTSVEFIIYTCINFILRDFR-KEYCVECYMMGIEYGLSNLLCHTKDFIAKHFLELEDDIIDNFDYL 166 (480)
T ss_pred HHHHHHHHhChHHHHHHHHHHHHhhCC-cchHHHHHHHHHHhCHHHHHHHHHHHHHHhHHHHhcccchhhhhC
Confidence 999999999999999999999999999 9999999999999999999999999999999999986 788765
No 19
>PHA02713 hypothetical protein; Provisional
Probab=99.93 E-value=1.3e-25 Score=261.83 Aligned_cols=152 Identities=12% Similarity=0.205 Sum_probs=140.5
Q ss_pred chhhhhccCCCCCC-EEEEEc-CeEEEeehhHHhccCHHHHHHhcCCCCcCC-CCeeEecCCCCCHHHHHHHhhhHccCC
Q 002379 206 VEKFVCLSLEEDDS-VTFCVR-DKEISFVRNKIASLSSPFKAMLYGGFVESK-RKTIDFSHDGVSVEGLRAVEVYTRTSR 282 (929)
Q Consensus 206 ~~~~~~~~~~~~~~-v~~~v~-~~~~~~hr~iLaa~S~~F~~mf~~~~~e~~-~~~i~~~~~~~~~~~~~~~l~~~Yt~~ 282 (929)
......++.++..+ |+++|+ |++|+|||.||||+|+||++||+++|+|+. +++|+| +++++++|+.+|+|+|||+
T Consensus 13 l~~l~~lr~~~~l~DV~L~v~~~~~f~~Hr~vLaa~S~YF~amF~~~~~e~~~~~~v~l--~~v~~~~~~~ll~y~Yt~~ 90 (557)
T PHA02713 13 VSNISNLLDDDILCDVIITIGDGEEIKAHKTILAAGSKYFRTLFTTPMIIRDLVTRVNL--QMFDKDAVKNIVQYLYNRH 90 (557)
T ss_pred HHHHHHHHhCCCCCCEEEEeCCCCEEeehHHHHhhcCHHHHHHhcCCchhhccCceEEe--ccCCHHHHHHHHHHhcCCC
Confidence 34445555556666 999997 899999999999999999999999999875 789999 9999999999999999996
Q ss_pred CCCCChhHHHHHHHHhchhChHhHHHHHHHHHHhhcCChhhHHHHHHHHHHhChHHHHHHHHHHHHhchhhhcCccchhh
Q 002379 283 VDLFCPGIVLELLSFANRFCCEEMKSACDAHLASLVGDIEDALILIDYGLEERATLLVASCLQVLLRELPSSLYNPKVMK 362 (929)
Q Consensus 283 ~~~~~~~~~~~ll~~A~~~~~~~l~~~C~~~l~~~~~~~~n~~~~~~~a~~~~~~~L~~~c~~~i~~~~~~v~~~~~f~~ 362 (929)
++.++|++||.+|++|+++.|++.|++||.+.++ ++||+.++.++..+++..|.+.|.+||.+||.++.++++|.+
T Consensus 91 ---i~~~nv~~ll~aA~~lqi~~l~~~C~~~l~~~l~-~~NCl~i~~~~~~~~~~~L~~~a~~~i~~~f~~v~~~~ef~~ 166 (557)
T PHA02713 91 ---ISSMNVIDVLKCADYLLIDDLVTDCESYIKDYTN-HDTCIYMYHRLYEMSHIPIVKYIKRMLMSNIPTLITTDAFKK 166 (557)
T ss_pred ---CCHHHHHHHHHHHHHHCHHHHHHHHHHHHHhhCC-ccchHHHHHHHHhccchHHHHHHHHHHHHHHHHHhCChhhhh
Confidence 5789999999999999999999999999999999 999999999999999999999999999999999999999987
Q ss_pred h
Q 002379 363 I 363 (929)
Q Consensus 363 L 363 (929)
|
T Consensus 167 L 167 (557)
T PHA02713 167 T 167 (557)
T ss_pred C
Confidence 6
No 20
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.92 E-value=1.3e-25 Score=260.37 Aligned_cols=155 Identities=25% Similarity=0.298 Sum_probs=148.0
Q ss_pred cchhhhhccCCCCCC-EEEEEcCeEEEeehhHHhccCHHHHHHhcCCCCcCCCCeeEecCCCCCHHHHHHHhhhHccCCC
Q 002379 205 IVEKFVCLSLEEDDS-VTFCVRDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRV 283 (929)
Q Consensus 205 ~~~~~~~~~~~~~~~-v~~~v~~~~~~~hr~iLaa~S~~F~~mf~~~~~e~~~~~i~~~~~~~~~~~~~~~l~~~Yt~~~ 283 (929)
+...+..++.....+ |++.|++++|+|||.||||+||||++||+++|+|+.+.+|+| .+|++.+|..+++|+||+++
T Consensus 23 ~l~~l~~lr~~~~lcDv~L~v~~~~~~aHR~VLAa~S~YFraMFt~~l~e~~~~~i~l--~~v~~~~l~~ll~y~Yt~~i 100 (571)
T KOG4441|consen 23 LLQGLNELREEGLLCDVTLLVGDREFPAHRVVLAACSPYFRAMFTSGLKESKQKEINL--EGVDPETLELLLDYAYTGKL 100 (571)
T ss_pred HHHHHHHHHHhCCCceEEEEECCeeechHHHHHHhccHHHHHHhcCCcccccceEEEE--ecCCHHHHHHHHHHhhcceE
Confidence 355566666666777 999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred CCCChhHHHHHHHHhchhChHhHHHHHHHHHHhhcCChhhHHHHHHHHHHhChHHHHHHHHHHHHhchhhhcCccchhhh
Q 002379 284 DLFCPGIVLELLSFANRFCCEEMKSACDAHLASLVGDIEDALILIDYGLEERATLLVASCLQVLLRELPSSLYNPKVMKI 363 (929)
Q Consensus 284 ~~~~~~~~~~ll~~A~~~~~~~l~~~C~~~l~~~~~~~~n~~~~~~~a~~~~~~~L~~~c~~~i~~~~~~v~~~~~f~~L 363 (929)
. ++.++|++||.+|++||++.+.+.|++||.++++ ++||+.|..+|+.|+|.+|...+..||.+||.++.++++|+.|
T Consensus 101 ~-i~~~nVq~ll~aA~~lQi~~v~~~C~~fL~~~l~-~~Nclgi~~~a~~~~~~~L~~~a~~~i~~~F~~v~~~eefl~L 178 (571)
T KOG4441|consen 101 E-ISEDNVQELLEAASLLQIPEVVDACCEFLESQLD-PSNCLGIRRFAELHSCTELLEVADEYILQHFAEVSKTEEFLLL 178 (571)
T ss_pred E-echHhHHHHHHHHHHhhhHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhccHHhhCC
Confidence 9 9999999999999999999999999999999999 9999999999999999999999999999999999999999875
No 21
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=1.5e-22 Score=213.19 Aligned_cols=390 Identities=17% Similarity=0.140 Sum_probs=262.0
Q ss_pred HHHHHhhhh--HHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccC-CHhHHHHHHHHHHHhccHHH
Q 002379 490 ERSLYNLGR--EKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYES 566 (929)
Q Consensus 490 ~~~l~~~~~--~Ai~~~~kal~l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~~g~~~~ 566 (929)
|.-.+..++ +||++|++||++.|+.+..|-+++.+|...|+|++-++...++++++| ...+++.|+..+-.+|++.+
T Consensus 122 GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~e 201 (606)
T KOG0547|consen 122 GNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLGKFDE 201 (606)
T ss_pred hhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccHHH
Confidence 333444433 666666666666666666666666666666666666666666666665 44456666666666666666
Q ss_pred HHHHHHHHHhhcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCC-------C
Q 002379 567 ALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPG-------K 639 (929)
Q Consensus 567 A~~~~~~al~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~~p~-------~ 639 (929)
|+....-.- +..+.... ....++..+...++. .++.+.+. .++...+.....+..|-..+..+|. +
T Consensus 202 al~D~tv~c-i~~~F~n~----s~~~~~eR~Lkk~a~-~ka~e~~k-~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ 274 (606)
T KOG0547|consen 202 ALFDVTVLC-ILEGFQNA----SIEPMAERVLKKQAM-KKAKEKLK-ENRPPVLPSATFIASYFGSFHADPKPLFDNKSD 274 (606)
T ss_pred HHHhhhHHH-Hhhhcccc----hhHHHHHHHHHHHHH-HHHHHhhc-ccCCCCCCcHHHHHHHHhhccccccccccCCCc
Confidence 665543321 11110000 111111111111111 01111110 0011111111113333333333221 1
Q ss_pred -hHHHHHHHHHHHHhc---CHHHHHHHHHHHHhcC----Cch---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002379 640 -SFLRFRQSLLLLRLN---CQKAAMRCLRLARNHS----SSE---------HERLVYEGWILYDTGHREEALSRAEKSIS 702 (929)
Q Consensus 640 -~~~~~~lg~~~~~~g---~~~~A~~~l~~al~~~----p~~---------~~~~~~lg~~~~~~g~~~eA~~~~~~al~ 702 (929)
+.+-..-+.-++..+ .|..|...+.+..... ..+ +.++...|..++-.|++-.|...|+.+|.
T Consensus 275 ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~ 354 (606)
T KOG0547|consen 275 KSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIK 354 (606)
T ss_pred cchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHh
Confidence 122222222222223 5677777666654321 111 56777788888889999999999999999
Q ss_pred hccchHHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC--CCH
Q 002379 703 IERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI--KHT 780 (929)
Q Consensus 703 ~~p~~~~~~~l~~~l~~~~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~--~~~ 780 (929)
++|.+ ...|..+|.+|....+.++-...|.+|..+ .++
T Consensus 355 l~~~~----------------------------------------~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~ 394 (606)
T KOG0547|consen 355 LDPAF----------------------------------------NSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENP 394 (606)
T ss_pred cCccc----------------------------------------chHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCC
Confidence 88866 233778899999999999999999999999 567
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHh----hhCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHh
Q 002379 781 RAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS----EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMD 856 (929)
Q Consensus 781 ~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg----~~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~ 856 (929)
++|+..|.+++.++++++|+..|+++++++|++..++.+++ ..++++++...|+.+.+..|+.++.+...|.++..
T Consensus 395 dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtD 474 (606)
T KOG0547|consen 395 DVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTD 474 (606)
T ss_pred chhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhh
Confidence 89999999999999999999999999999999999999888 66899999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCC------chHHH-HHHHH-HHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHhhhhh
Q 002379 857 DQKEVEAVEELSKAIAFKPD------LQMLH-LRAAF-YESIGDLTSAIRDSQAALCLDPNHMETLDLYNRARDQASH 926 (929)
Q Consensus 857 ~g~~~eA~~~l~kal~~~p~------~~~~~-~la~~-~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~l~~~~~~ 926 (929)
++++++|++.|.+++++.|. ++..+ ..|.+ ....+|+..|++.+++|+++||....++.-++.+.-+.++
T Consensus 475 qqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~ 552 (606)
T KOG0547|consen 475 QQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGK 552 (606)
T ss_pred HHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhh
Confidence 99999999999999999998 33222 22322 2346999999999999999999999999999988766543
No 22
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1e-21 Score=210.81 Aligned_cols=426 Identities=17% Similarity=0.153 Sum_probs=303.4
Q ss_pred HHHhhHHHHhcccHHHHHHHHHHHHhcCccccHHHHHHHHHHhchHHHHHHHHHhhhccCCCchhhhHHHHHHhhhhHHH
Q 002379 422 LHQLGCVMFEREEYKDACYYFEAAADAGHIYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNLGREKI 501 (929)
Q Consensus 422 ~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~~~a~la~~~~~~g~a~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Ai 501 (929)
+-..|+..+..|+|+.|+..|..++.++|.+.. .|.++..++.... ...+|+
T Consensus 5 ~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhv-----lySnrsaa~a~~~-----------------------~~~~al 56 (539)
T KOG0548|consen 5 LKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHV-----LYSNRSAAYASLG-----------------------SYEKAL 56 (539)
T ss_pred HHHHHHhhcccccHHHHHHHHHHHHccCCCccc-----hhcchHHHHHHHh-----------------------hHHHHH
Confidence 456799999999999999999999999999877 5555555544444 555788
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccC-CHhHHHHHHHHHHHh-------------------
Q 002379 502 VDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAA------------------- 561 (929)
Q Consensus 502 ~~~~kal~l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~~------------------- 561 (929)
++-.+.++++|+-+..|..+|..+.-+|+|++|+..|.+.++.+| +......++..+...
T Consensus 57 ~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~ 136 (539)
T KOG0548|consen 57 KDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANL 136 (539)
T ss_pred HHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcC
Confidence 888888999999999999999999999999999999999998887 444555555555111
Q ss_pred --ccHHHHHHHHHHHHhhcCCch---hhhccccH-HHHHHHHHHhhcccchHHHHHHhhhcc-ccc--------cccccH
Q 002379 562 --DDYESALRDTLALLALESNYM---MFHGRVSG-DHLVKLLNHHVRSWSPADCWIKLYDRW-SSV--------DDIGSL 626 (929)
Q Consensus 562 --g~~~~A~~~~~~al~~~p~~~---~~~~~~~a-~~ll~~~~~~~~~~~~A~~~l~l~~~~-~~~--------~~~~~l 626 (929)
-++--....|...++..|.++ ..+..... ...++.+. ..+.... ....... ... +....+
T Consensus 137 p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~-~~~~~~~----~~~~~~~~~~~~~p~~~~~~~~~~~ 211 (539)
T KOG0548|consen 137 PLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLK-GVDELLF----YASGIEILASMAEPCKQEHNGFPII 211 (539)
T ss_pred hhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHh-cCccccc----cccccccCCCCCCcccccCCCCCcc
Confidence 111112233333443333333 11111000 00111111 0000000 0000000 000 000000
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccc
Q 002379 627 AVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERT 706 (929)
Q Consensus 627 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~ 706 (929)
....+- ...-..+...-.+|...+...+++.|++.|..+++++ .+...+.+.+.+|+..|++.+.+.....+++....
T Consensus 212 ~d~~ee-~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre 289 (539)
T KOG0548|consen 212 EDNTEE-RRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE 289 (539)
T ss_pred chhHHH-HHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH
Confidence 000000 0011123345688999999999999999999999999 88888999999999999999999999998876655
Q ss_pred h-HHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC-CCHHHHH
Q 002379 707 F-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI-KHTRAHQ 784 (929)
Q Consensus 707 ~-~~~~~l~~~l~~~~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~-~~~~a~~ 784 (929)
. .-+..++ .+...+|..|...++++.|+.+|++++.. ..
T Consensus 290 ~rad~klIa----------------------------------k~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt----- 330 (539)
T KOG0548|consen 290 LRADYKLIA----------------------------------KALARLGNAYTKREDYEGAIKYYQKALTEHRT----- 330 (539)
T ss_pred HHHHHHHHH----------------------------------HHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC-----
Confidence 5 2222222 22444788888899999999999998876 33
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHh----hhCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCH
Q 002379 785 GLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS----EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKE 860 (929)
Q Consensus 785 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg----~~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~ 860 (929)
..+.......+++........-.+|+-+..-...| ..|++..|+..|.+++..+|+++..|.++|.+|.+.|.+
T Consensus 331 --~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~ 408 (539)
T KOG0548|consen 331 --PDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEY 408 (539)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhH
Confidence 34455566677777777777777777655544455 679999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCchHHHHH-HHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHhh
Q 002379 861 VEAVEELSKAIAFKPDLQMLHLR-AAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNRARDQ 923 (929)
Q Consensus 861 ~eA~~~l~kal~~~p~~~~~~~l-a~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~l~~~ 923 (929)
..|+...+++++++|+....|.+ |.++..+.+|++|++.|++++++||++.++...+.+..+.
T Consensus 409 ~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 409 PEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEA 472 (539)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 99999999999999999988866 9999999999999999999999999999999999887664
No 23
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.92 E-value=6.4e-25 Score=224.08 Aligned_cols=148 Identities=28% Similarity=0.427 Sum_probs=140.9
Q ss_pred cCCCCCCEEEEEcCeEEEeehhHHhccCHHHHHHhcCCCCcCCCCeeEecCCCCCHHHHHHHhhhHccCCCCC--CChhH
Q 002379 213 SLEEDDSVTFCVRDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDL--FCPGI 290 (929)
Q Consensus 213 ~~~~~~~v~~~v~~~~~~~hr~iLaa~S~~F~~mf~~~~~e~~~~~i~~~~~~~~~~~~~~~l~~~Yt~~~~~--~~~~~ 290 (929)
.+.+.++|||+|++++|||||.|||+||.|||||++|||+|+.+..|++ .+...++|+++|+|||||++.. +..+.
T Consensus 40 ~~e~y~DVtfvve~~rfpAHRvILAaRs~yFRAlLYgGm~Es~q~~ipL--q~t~~eAF~~lLrYiYtg~~~l~~~~ed~ 117 (620)
T KOG4350|consen 40 TSEDYSDVTFVVEDTRFPAHRVILAARSSYFRALLYGGMQESHQQLIPL--QETNSEAFRALLRYIYTGKIDLAGVEEDI 117 (620)
T ss_pred hcCcccceEEEEeccccchhhhhHHHHHHHHHHHHhhhhhhhhhccccc--ccccHHHHHHHHHHHhhcceecccchHHH
Confidence 4445556999999999999999999999999999999999999999999 8899999999999999999984 67788
Q ss_pred HHHHHHHhchhChHhHHHHHHHHHHhhcCChhhHHHHHHHHHHhChHHHHHHHHHHHHhchhhhcCccchhhh
Q 002379 291 VLELLSFANRFCCEEMKSACDAHLASLVGDIEDALILIDYGLEERATLLVASCLQVLLRELPSSLYNPKVMKI 363 (929)
Q Consensus 291 ~~~ll~~A~~~~~~~l~~~C~~~l~~~~~~~~n~~~~~~~a~~~~~~~L~~~c~~~i~~~~~~v~~~~~f~~L 363 (929)
+++.|.+|++|++..|.....++|++.+. .+|++.+++.|..|+.++|...|+.|+.+|..+++.+++|..|
T Consensus 118 lld~LslAh~Ygf~~Le~aiSeYl~~iL~-~~NvCmifdaA~ly~l~~Lt~~C~mfmDrnA~~lL~~~sFn~L 189 (620)
T KOG4350|consen 118 LLDYLSLAHRYGFIQLETAISEYLKEILK-NENVCMIFDAAYLYQLTDLTDYCMMFMDRNADQLLEDPSFNRL 189 (620)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHHc-ccceeeeeeHHHHhcchHHHHHHHHHHhcCHHhhhcCcchhhh
Confidence 99999999999999999999999999999 9999999999999999999999999999999999999999887
No 24
>PHA03098 kelch-like protein; Provisional
Probab=99.91 E-value=6e-24 Score=250.67 Aligned_cols=141 Identities=13% Similarity=0.214 Sum_probs=134.1
Q ss_pred CCCCCEEEEE--cCeEEEeehhHHhccCHHHHHHhcCCCCcCCCCeeEecCCCCCHHHHHHHhhhHccCCCCCCChhHHH
Q 002379 215 EEDDSVTFCV--RDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFCPGIVL 292 (929)
Q Consensus 215 ~~~~~v~~~v--~~~~~~~hr~iLaa~S~~F~~mf~~~~~e~~~~~i~~~~~~~~~~~~~~~l~~~Yt~~~~~~~~~~~~ 292 (929)
....||+++| +|++|+|||.|||++|+||++||+++|+ +.+|+| ++ ++++|+.+|+|+|||++. ++.++++
T Consensus 7 ~~~~Dv~l~~~~~~~~~~~Hk~vLaa~S~yF~~mf~~~~~---~~~i~l--~~-~~~~~~~~l~y~Ytg~~~-i~~~~~~ 79 (534)
T PHA03098 7 QKFCDESIIIVNGGGIIKVHKIILSSSSEYFKKMFKNNFK---ENEINL--NI-DYDSFNEVIKYIYTGKIN-ITSNNVK 79 (534)
T ss_pred CCCCCEEEEEEcCCEEEEeHHHHHHhhhHHHHHHHhCCCC---CceEEe--cC-CHHHHHHHHHHhcCCceE-EcHHHHH
Confidence 3344477777 9999999999999999999999999998 578999 88 999999999999999999 9999999
Q ss_pred HHHHHhchhChHhHHHHHHHHHHhhcCChhhHHHHHHHHHHhChHHHHHHHHHHHHhchhhhcCccchhhh
Q 002379 293 ELLSFANRFCCEEMKSACDAHLASLVGDIEDALILIDYGLEERATLLVASCLQVLLRELPSSLYNPKVMKI 363 (929)
Q Consensus 293 ~ll~~A~~~~~~~l~~~C~~~l~~~~~~~~n~~~~~~~a~~~~~~~L~~~c~~~i~~~~~~v~~~~~f~~L 363 (929)
+||.+|++|+++.|+..|+++|.+.++ ++||+.++.+|..|++..|.+.|.+||.+||.++.++++|.+|
T Consensus 80 ~ll~~A~~l~~~~l~~~C~~~l~~~l~-~~nc~~~~~~a~~~~~~~L~~~~~~~i~~nf~~v~~~~~f~~l 149 (534)
T PHA03098 80 DILSIANYLIIDFLINLCINYIIKIID-DNNCIDIYRFSFFYGCKKLYSAAYNYIRNNIELIYNDPDFIYL 149 (534)
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHhCC-HhHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhcCchhhcC
Confidence 999999999999999999999999999 9999999999999999999999999999999999999999988
No 25
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=9.3e-20 Score=191.36 Aligned_cols=345 Identities=15% Similarity=0.071 Sum_probs=246.7
Q ss_pred CChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccC-CHhHHHHHHHHHHHhccHHHHHHHHHHHHhhcCCchhhhccccHH
Q 002379 513 TLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGD 591 (929)
Q Consensus 513 ~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~ 591 (929)
.++..++..|.++.+.|....|+..|..++...| ...+|..++.+. .-+........--|.+..| -..
T Consensus 162 ~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~li-------t~~e~~~~l~~~l~~~~h~----M~~ 230 (559)
T KOG1155|consen 162 KDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELI-------TDIEILSILVVGLPSDMHW----MKK 230 (559)
T ss_pred chhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhh-------chHHHHHHHHhcCcccchH----HHH
Confidence 3466777788888888888888888888875555 444444333322 1122222222222322211 122
Q ss_pred HHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhc-CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 002379 592 HLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLIN-DPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHS 670 (929)
Q Consensus 592 ~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~ 670 (929)
..+..++....+.+++..-. +..... -|...-.-...|.+.+.+.++++|+..|+...+.+
T Consensus 231 ~F~~~a~~el~q~~e~~~k~------------------e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knD 292 (559)
T KOG1155|consen 231 FFLKKAYQELHQHEEALQKK------------------ERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKND 292 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHH------------------HHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcC
Confidence 33444444444444442111 333333 34455555555555555556666666666555555
Q ss_pred Cch----------------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHHH
Q 002379 671 SSE----------------------------------HERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYI 716 (929)
Q Consensus 671 p~~----------------------------------~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~l~~~ 716 (929)
|-. ++...-+|+.|.-.++.++|+.+|++|++++|..
T Consensus 293 PYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~--------- 363 (559)
T KOG1155|consen 293 PYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKY--------- 363 (559)
T ss_pred CCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcch---------
Confidence 543 3333444555555555666666666666666554
Q ss_pred HHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCH--HHHHHHHHHHHHhC
Q 002379 717 LADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIKHT--RAHQGLARVYYLKN 794 (929)
Q Consensus 717 l~~~~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~~--~a~~~la~~~~~~g 794 (929)
..+|..+|.-|..+++...|++.|++|+++++. ++|+++|.+|..++
T Consensus 364 -------------------------------~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~ 412 (559)
T KOG1155|consen 364 -------------------------------LSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMK 412 (559)
T ss_pred -------------------------------hHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhc
Confidence 467889999999999999999999999999655 69999999999999
Q ss_pred CHHHHHHHHHHHHHHccCCHHHHHHHh----hhCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 002379 795 ELKAAYDEMTKLLEKAQYSASAFEKRS----EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKA 870 (929)
Q Consensus 795 ~~~~A~~~~~~al~~~p~~~~~~~~lg----~~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~ka 870 (929)
...=|+-+|+++.+..|++...|..+| .+++.++|+.+|.+++.....+..++..+|.+|.+.++.++|..+|++.
T Consensus 413 Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~ 492 (559)
T KOG1155|consen 413 MHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKY 492 (559)
T ss_pred chHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 999999999999999999999999999 6799999999999999999999999999999999999999999999999
Q ss_pred HhcC-------CCch-HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHhhhhh
Q 002379 871 IAFK-------PDLQ-MLHLRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNRARDQASH 926 (929)
Q Consensus 871 l~~~-------p~~~-~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~l~~~~~~ 926 (929)
++.. |+.. ....++..+.+.+++++|-.+..+++.-++.-.++..++..++...+.
T Consensus 493 v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e~eeak~LlReir~~~~p 556 (559)
T KOG1155|consen 493 VEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGETECEEAKALLREIRKIQAP 556 (559)
T ss_pred HHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCC
Confidence 9843 3222 222679999999999999999999999999999999888888876653
No 26
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=7.8e-22 Score=216.80 Aligned_cols=299 Identities=17% Similarity=0.174 Sum_probs=204.8
Q ss_pred HHHHHHHH--HHhCCHHHHHHHHHHHhcccCC-HhHHHHHHHHHHHhccHHHHHHHHHHHHhhcCCchhhhccccHHHHH
Q 002379 518 YKYRAVAK--MEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLV 594 (929)
Q Consensus 518 ~~~~a~~~--~~~g~~~~A~~~~~~al~~~~~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~ll 594 (929)
+..+|..+ ..+-+..+|+..|.+.-...++ .-.+..+|..|+.+++|++|.++|+.+-++.|-.. +...+.
T Consensus 320 lr~~~~~~~~~s~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv------~~meiy 393 (638)
T KOG1126|consen 320 LRGLGEGYRSLSQYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRV------KGMEIY 393 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc------cchhHH
Confidence 44445444 4455678999999995444443 34477899999999999999999999999888766 222222
Q ss_pred HHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchH
Q 002379 595 KLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEH 674 (929)
Q Consensus 595 ~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~ 674 (929)
..+....++-- +..+ .-+..+..+|+.|..|..+|.+|.-+++++.|+++|++|++++|...
T Consensus 394 ST~LWHLq~~v-~Ls~-----------------Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~fa 455 (638)
T KOG1126|consen 394 STTLWHLQDEV-ALSY-----------------LAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFA 455 (638)
T ss_pred HHHHHHHHhhH-HHHH-----------------HHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccc
Confidence 22222211100 0000 01344455566666666666666666666666666666666666555
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHH
Q 002379 675 ERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNL 754 (929)
Q Consensus 675 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~l~~~l~~~~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~l 754 (929)
.+|..+|.=+..+.++|.|..+|+.|+..+|.+
T Consensus 456 YayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rh----------------------------------------------- 488 (638)
T KOG1126|consen 456 YAYTLLGHESIATEEFDKAMKSFRKALGVDPRH----------------------------------------------- 488 (638)
T ss_pred hhhhhcCChhhhhHHHHhHHHHHHhhhcCCchh-----------------------------------------------
Confidence 555555555555555555555555555555544
Q ss_pred HHHHHHcCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHh----hhCCHHHHH
Q 002379 755 GSIYVECGKLDQAENCYINALDIKHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS----EYSDREMAK 830 (929)
Q Consensus 755 g~~~~~~g~~~eA~~~~~~al~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg----~~g~~~~A~ 830 (929)
-++|+++|.+|.++++++.|.-.|++|++++|.+.......| ..|+.++|+
T Consensus 489 -------------------------YnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL 543 (638)
T KOG1126|consen 489 -------------------------YNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKAL 543 (638)
T ss_pred -------------------------hHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHH
Confidence 345566666666666666666666666666666655555554 456667777
Q ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHH-HHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 002379 831 NDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLH-LRAAFYESIGDLTSAIRDSQAALCLDPN 909 (929)
Q Consensus 831 ~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~-~la~~~~~~g~~~~A~~~~~~al~l~P~ 909 (929)
..|++|+.++|.++...+..|.++...+++++|+..+++..++-|+....+ ++|.+|.++|+.+.|+..|.-|..+||.
T Consensus 544 ~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 544 QLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred HHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 777777888888999999999999999999999999999999999998666 7799999999999999999999999998
Q ss_pred CHH
Q 002379 910 HME 912 (929)
Q Consensus 910 ~~~ 912 (929)
-.+
T Consensus 624 g~~ 626 (638)
T KOG1126|consen 624 GAQ 626 (638)
T ss_pred cch
Confidence 766
No 27
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.90 E-value=3.2e-19 Score=213.32 Aligned_cols=446 Identities=12% Similarity=0.038 Sum_probs=320.8
Q ss_pred HHHHHHhhHHHHhcccHHHHHHHHHHHHhcCcccc--HHHHHHHHHHhchHHHHHHHHHhhhccCCCchhhhH--HHHHH
Q 002379 419 MLALHQLGCVMFEREEYKDACYYFEAAADAGHIYS--LAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQ--ERSLY 494 (929)
Q Consensus 419 a~~~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~~--~a~la~~~~~~g~a~~a~~~~~~~~~~~~~~~~~~~--~~~l~ 494 (929)
+...+..+.+.++.|+|+.|+..|+++++.+|.+. ...++.++...|+...+...+.+.....+....... +..+.
T Consensus 34 ~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~ 113 (822)
T PRK14574 34 ADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYR 113 (822)
T ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHH
Confidence 34667889999999999999999999999999985 446777777778766666655555533233333333 44555
Q ss_pred hhhh--HHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccCCHhHHHHHHHHHHHhccHHHHHHHHH
Q 002379 495 NLGR--EKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTL 572 (929)
Q Consensus 495 ~~~~--~Ai~~~~kal~l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~ 572 (929)
..++ +|+..|+++++.+|+++.++..++..+...++.++|+..++++....|....+..++.++...++..+|+..++
T Consensus 114 ~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~e 193 (822)
T PRK14574 114 NEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASS 193 (822)
T ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHH
Confidence 5555 99999999999999999999999999999999999999999999888754444555555555777877999999
Q ss_pred HHHhhcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhc--C--CCChHHHHHHHH
Q 002379 573 ALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLIN--D--PGKSFLRFRQSL 648 (929)
Q Consensus 573 ~al~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~--~--p~~~~~~~~lg~ 648 (929)
++++.+|++. ..+..+..+....|....|...++.+..|....+...++...-+-.. . +....
T Consensus 194 kll~~~P~n~------e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~------- 260 (822)
T PRK14574 194 EAVRLAPTSE------EVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSE------- 260 (822)
T ss_pred HHHHhCCCCH------HHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccc-------
Confidence 9999999999 66666777788888888887777666655554443222221111111 0 10000
Q ss_pred HHHHhcCHHHHHHHHHHHHhcCCchH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHHHHHhcC
Q 002379 649 LLLRLNCQKAAMRCLRLARNHSSSEH-------ERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTN 721 (929)
Q Consensus 649 ~~~~~g~~~~A~~~l~~al~~~p~~~-------~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~l~~~l~~~~ 721 (929)
-.+---.+.|+..+++.+...+..| .+..-.-.++...|++.+++..|+..-......
T Consensus 261 -~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~-------------- 325 (822)
T PRK14574 261 -TERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKM-------------- 325 (822)
T ss_pred -hhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCC--------------
Confidence 0001123566667777666333322 122333455667778888888877655322111
Q ss_pred CCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcCC------CHH--HHHHHHHHHHHh
Q 002379 722 LDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIK------HTR--AHQGLARVYYLK 793 (929)
Q Consensus 722 ~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~------~~~--a~~~la~~~~~~ 793 (929)
|.-+....|..|+..++.++|+..|++++.-. +.+ ....|-.+|...
T Consensus 326 -------------------------P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~ 380 (822)
T PRK14574 326 -------------------------PDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNES 380 (822)
T ss_pred -------------------------CHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhc
Confidence 12345567788888888888888888887642 112 246777788888
Q ss_pred CCHHHHHHHHHHHHHHccC------------C---HHHHHHHh----hhCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Q 002379 794 NELKAAYDEMTKLLEKAQY------------S---ASAFEKRS----EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVL 854 (929)
Q Consensus 794 g~~~~A~~~~~~al~~~p~------------~---~~~~~~lg----~~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~ 854 (929)
+++++|..++++..+..|- | ..+...++ ..|+..+|.+.+++.+...|.+...+..+|.++
T Consensus 381 e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~ 460 (822)
T PRK14574 381 EQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIY 460 (822)
T ss_pred ccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 8888888888888775441 1 11222222 568889999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCchHHH-HHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHH
Q 002379 855 MDDQKEVEAVEELSKAIAFKPDLQMLH-LRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLY 917 (929)
Q Consensus 855 ~~~g~~~eA~~~l~kal~~~p~~~~~~-~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~ 917 (929)
...|++.+|...++.+..++|++.... .+|.++..+|++.+|....+++++..|+++.+..+-
T Consensus 461 ~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~~l~ 524 (822)
T PRK14574 461 LARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPSQELD 524 (822)
T ss_pred HhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhHHHHH
Confidence 999999999999999999999887665 669999999999999999999999999998776543
No 28
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=6e-20 Score=192.76 Aligned_cols=370 Identities=14% Similarity=0.086 Sum_probs=270.3
Q ss_pred HHHHHHhhHHHHhcccHHHHHHHHHHHHhcCccccHHHHHHHHHHhchHHHHHHHHHhhhccCC-CchhhhH---HHH--
Q 002379 419 MLALHQLGCVMFEREEYKDACYYFEAAADAGHIYSLAGLARAKYKVGQQYSAYKLINSIISEHK-PTGWMYQ---ERS-- 492 (929)
Q Consensus 419 a~~~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~~~a~la~~~~~~g~a~~a~~~~~~~~~~~~-~~~~~~~---~~~-- 492 (929)
...++..|.++-+.|....|+..|..++...|++.. ++...+......+.+..++.... ...||-. ..+
T Consensus 164 ~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~-----AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~ 238 (559)
T KOG1155|consen 164 EFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWS-----AWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQ 238 (559)
T ss_pred hHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchH-----HHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHH
Confidence 457888999999999999999999999999999887 44444444443433333332211 1334321 111
Q ss_pred HHhhhhHHHHHHHHHHhc-CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccC-CHhHHHHHHHHHHHhccHHHHHHH
Q 002379 493 LYNLGREKIVDLNYASEL-DPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRD 570 (929)
Q Consensus 493 l~~~~~~Ai~~~~kal~l-~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~~g~~~~A~~~ 570 (929)
-..+.++++..++..... .|++...-...|.+...+.++++|+..|+.+.+.+| ..+.......+++-.++-.+---.
T Consensus 239 el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~L 318 (559)
T KOG1155|consen 239 ELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYL 318 (559)
T ss_pred HHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHH
Confidence 222344777777777777 777777778888888888888888888888887776 444444455555555444443334
Q ss_pred HHHHHhhcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHH
Q 002379 571 TLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLL 650 (929)
Q Consensus 571 ~~~al~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~lg~~~ 650 (929)
-+.+..++.-.+ +....+|.-|...++.++|..++ +++++++|....+|..+|.-|
T Consensus 319 A~~v~~idKyR~------ETCCiIaNYYSlr~eHEKAv~YF------------------kRALkLNp~~~~aWTLmGHEy 374 (559)
T KOG1155|consen 319 AQNVSNIDKYRP------ETCCIIANYYSLRSEHEKAVMYF------------------KRALKLNPKYLSAWTLMGHEY 374 (559)
T ss_pred HHHHHHhccCCc------cceeeehhHHHHHHhHHHHHHHH------------------HHHHhcCcchhHHHHHhhHHH
Confidence 445555555555 66666777777777777776666 888888888888888888888
Q ss_pred HHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHHHHHhcCCCCCChHHH
Q 002379 651 LRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYV 730 (929)
Q Consensus 651 ~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~l~~~l~~~~~~~~~~~~a 730 (929)
..+.+...|+..|++|++++|.+..+|+.+|.+|.-++-..=|+-+|++|+...|++
T Consensus 375 vEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnD----------------------- 431 (559)
T KOG1155|consen 375 VEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPND----------------------- 431 (559)
T ss_pred HHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCc-----------------------
Confidence 888888888888888888888888888888888888888888888888888888876
Q ss_pred HHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCH--HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 002379 731 IQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIKHT--RAHQGLARVYYLKNELKAAYDEMTKLLE 808 (929)
Q Consensus 731 ~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~~--~a~~~la~~~~~~g~~~~A~~~~~~al~ 808 (929)
...|..||.+|.+.++.++|+.+|.+++..+++ .++..+|.+|.+.++..+|...|.+.++
T Consensus 432 -----------------sRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 432 -----------------SRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred -----------------hHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 566888999999999999999999999998655 7899999999999999999999988887
Q ss_pred HccCCHHHHHHHhhhCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHH
Q 002379 809 KAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQML 880 (929)
Q Consensus 809 ~~p~~~~~~~~lg~~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~ 880 (929)
.. ...-..+|....+...||.-+.+.+++++|-.+..+++..++.-...
T Consensus 495 ~~-----------------------~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e~eea 543 (559)
T KOG1155|consen 495 VS-----------------------ELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGETECEEA 543 (559)
T ss_pred HH-----------------------HhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCchHHHH
Confidence 52 11112344455566678889999999999999998888775544433
No 29
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.89 E-value=5.9e-21 Score=192.62 Aligned_cols=210 Identities=19% Similarity=0.208 Sum_probs=170.8
Q ss_pred HHHHHHhhhh--HHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccCC-HhHHHHHHHHHHHhccHH
Q 002379 489 QERSLYNLGR--EKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYE 565 (929)
Q Consensus 489 ~~~~l~~~~~--~Ai~~~~kal~l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~a~~~~~~g~~~ 565 (929)
.|..++..++ .|+..|..|++.||++..+++.+|.+|...|+-..|+..+.++++++|+ ..+...+|.+++++|+++
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele 123 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELE 123 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHH
Confidence 4445555555 8999999999999999999999999999999999999999999999973 445788999999999999
Q ss_pred HHHHHHHHHHhhcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHH
Q 002379 566 SALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFR 645 (929)
Q Consensus 566 ~A~~~~~~al~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~ 645 (929)
+|...|+.++..+|++.... ++..-+..+.......... .....+.|....+..+.+.+++.|-++..+..
T Consensus 124 ~A~~DF~~vl~~~~s~~~~~---eaqskl~~~~e~~~l~~ql------~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~ 194 (504)
T KOG0624|consen 124 QAEADFDQVLQHEPSNGLVL---EAQSKLALIQEHWVLVQQL------KSASGSGDCQNAIEMITHLLEIQPWDASLRQA 194 (504)
T ss_pred HHHHHHHHHHhcCCCcchhH---HHHHHHHhHHHHHHHHHHH------HHHhcCCchhhHHHHHHHHHhcCcchhHHHHH
Confidence 99999999999999776110 2222233322221111111 11122334444567779999999999999999
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch
Q 002379 646 QSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF 707 (929)
Q Consensus 646 lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~ 707 (929)
++.+|...|+...|+..++.+-++..++.+.++.++.+++..|+.+.++...+.+++++|++
T Consensus 195 Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdH 256 (504)
T KOG0624|consen 195 RAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDH 256 (504)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcch
Confidence 99999999999999999999999999999999999999999999999999999999999988
No 30
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.89 E-value=2.8e-20 Score=193.37 Aligned_cols=268 Identities=18% Similarity=0.188 Sum_probs=224.3
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHc--CCHHHHHHHHHHHHhhccch-HHHHHHHHHH
Q 002379 642 LRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE-HERLVYEGWILYDT--GHREEALSRAEKSISIERTF-EAFFLKAYIL 717 (929)
Q Consensus 642 ~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~-~~~~~~lg~~~~~~--g~~~eA~~~~~~al~~~p~~-~~~~~l~~~l 717 (929)
+-.+.+.-|.+.|+++.|++.+.-.-..+... ..+-.++..+++.+ .++..|..+...++.++.-+ .+..+.+...
T Consensus 421 lei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~ 500 (840)
T KOG2003|consen 421 LEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIA 500 (840)
T ss_pred hhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCcee
Confidence 34566777888899999998876655444333 33445666666553 46788888888888887766 4444444433
Q ss_pred HhcCCCCCChHHHHHHHHHHhhchhccCch----hHHHHHHHHHHHHcCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHH
Q 002379 718 ADTNLDPESSTYVIQLLEEALRCPSDGLRK----GQALNNLGSIYVECGKLDQAENCYINALDI--KHTRAHQGLARVYY 791 (929)
Q Consensus 718 ~~~~~~~~~~~~a~~~~e~Al~~~~~al~~----~~a~~~lg~~~~~~g~~~eA~~~~~~al~~--~~~~a~~~la~~~~ 791 (929)
... +++++|.+.|+.+++. .++++++|..+..+|++++|+++|-+.-.+ ++..+++.++.+|.
T Consensus 501 f~n-----------gd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye 569 (840)
T KOG2003|consen 501 FAN-----------GDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYE 569 (840)
T ss_pred eec-----------CcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 333 3888888888888774 388999999999999999999999887666 88999999999999
Q ss_pred HhCCHHHHHHHHHHHHHHccCCHHHHHHHh----hhCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHH
Q 002379 792 LKNELKAAYDEMTKLLEKAQYSASAFEKRS----EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEEL 867 (929)
Q Consensus 792 ~~g~~~~A~~~~~~al~~~p~~~~~~~~lg----~~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l 867 (929)
.+.+..+|++.+.++...-|+++.++..++ +-|+..+|.+++-......|.+.+..-.+|..|....-+++|+.+|
T Consensus 570 ~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ 649 (840)
T KOG2003|consen 570 LLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYF 649 (840)
T ss_pred HhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHH
Confidence 999999999999999999999999999999 4588899999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCchHHHHH-HHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHH
Q 002379 868 SKAIAFKPDLQMLHLR-AAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNRA 920 (929)
Q Consensus 868 ~kal~~~p~~~~~~~l-a~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~l 920 (929)
+++--+.|+...|.++ +.|+.+.|+|.+|.+.|+..-...|.+.+.+..+-|+
T Consensus 650 ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri 703 (840)
T KOG2003|consen 650 EKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRI 703 (840)
T ss_pred HHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence 9999999999988865 9999999999999999999999999998887776655
No 31
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=4.8e-20 Score=198.42 Aligned_cols=393 Identities=17% Similarity=0.086 Sum_probs=282.4
Q ss_pred HHHHHHHhhHHHHhcccHHHHHHHHHHHHhcCccccHHHHHHHHHHhchHHHHHHHHHhhhccCCCchhhhHHHHHHhhh
Q 002379 418 RMLALHQLGCVMFEREEYKDACYYFEAAADAGHIYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNLG 497 (929)
Q Consensus 418 ~a~~~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~~~a~la~~~~~~g~a~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 497 (929)
.+..++..|.+|....+.++|...|.+|+..++....+-....-...-.+.+.++.+.++.-. . +....
T Consensus 140 essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a-----~------~~~ed 208 (611)
T KOG1173|consen 140 ESSICYLRGKVYVALDNREEARDKYKEALLADAKCFEAFEKLVSAHMLTAQEEFELLESLDLA-----M------LTKED 208 (611)
T ss_pred hhceeeeeeehhhhhccHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcchhHHHHHHhcccHH-----h------hhhhH
Confidence 345678899999999999999999999999988876642222211111122222211110000 0 00011
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccCCHhHHHHHHHHHHHhccHHHHHHHHHHHHhh
Q 002379 498 REKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLAL 577 (929)
Q Consensus 498 ~~Ai~~~~kal~l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~ 577 (929)
.+-++.+-+.....-.+... ..+.++ ++..+...+++.....+..++..++|.+..+..+..++.
T Consensus 209 ~e~l~~lyel~~~k~~n~~~-------~~r~~~--------~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~ 273 (611)
T KOG1173|consen 209 VERLEILYELKLCKNRNEES-------LTRNED--------ESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEK 273 (611)
T ss_pred HHHHHHHHHhhhhhhccccc-------cccCch--------hhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhh
Confidence 11111111111000000000 001111 444555567888899999999999999999999999999
Q ss_pred cCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHH
Q 002379 578 ESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQK 657 (929)
Q Consensus 578 ~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~ 657 (929)
+|-+..+ +-+.-..+...|+..+-..+ -.+.+...|+.+..|+..|..|...|++.
T Consensus 274 dpfh~~~------~~~~ia~l~el~~~n~Lf~l------------------sh~LV~~yP~~a~sW~aVg~YYl~i~k~s 329 (611)
T KOG1173|consen 274 DPFHLPC------LPLHIACLYELGKSNKLFLL------------------SHKLVDLYPSKALSWFAVGCYYLMIGKYS 329 (611)
T ss_pred CCCCcch------HHHHHHHHHHhcccchHHHH------------------HHHHHHhCCCCCcchhhHHHHHHHhcCcH
Confidence 9999843 22222244444443333222 27888899999999999999999999999
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHHHHHhcCCCCCChHHHHHHHHHH
Q 002379 658 AAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEA 737 (929)
Q Consensus 658 ~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~l~~~l~~~~~~~~~~~~a~~~~e~A 737 (929)
+|.++|.++..++|....+|...|..+...|..++|+.+|..|-++-|..
T Consensus 330 eARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~------------------------------ 379 (611)
T KOG1173|consen 330 EARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGC------------------------------ 379 (611)
T ss_pred HHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCC------------------------------
Confidence 99999999999999999999999999999999999999999999887755
Q ss_pred hhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHH
Q 002379 738 LRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI--KHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSAS 815 (929)
Q Consensus 738 l~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~--~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 815 (929)
-.....+|.-|...++++-|...|.+|+.+ .+|-.+..+|.+.+..+.+.+|..+|+.++..-+.
T Consensus 380 ----------hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~--- 446 (611)
T KOG1173|consen 380 ----------HLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKS--- 446 (611)
T ss_pred ----------cchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhh---
Confidence 112456777788888888888888888888 45567778888888888888888888877733211
Q ss_pred HHHHHhhhCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHH-HHHHHHHHcCCHH
Q 002379 816 AFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLH-LRAAFYESIGDLT 894 (929)
Q Consensus 816 ~~~~lg~~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~-~la~~~~~~g~~~ 894 (929)
.....+.....+.++|.++.+.+++++|+..|++++.+.|.+...+ ..|.+|..+|+++
T Consensus 447 --------------------~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld 506 (611)
T KOG1173|consen 447 --------------------VLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLD 506 (611)
T ss_pred --------------------ccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChH
Confidence 1111223456788999999999999999999999999999999888 6799999999999
Q ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHhh
Q 002379 895 SAIRDSQAALCLDPNHMETLDLYNRARDQ 923 (929)
Q Consensus 895 ~A~~~~~~al~l~P~~~~a~~~~~~l~~~ 923 (929)
.|++.|.++|.++|++.-+-.+++..-+.
T Consensus 507 ~Aid~fhKaL~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 507 KAIDHFHKALALKPDNIFISELLKLAIED 535 (611)
T ss_pred HHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 99999999999999998888888876544
No 32
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=6.7e-21 Score=209.54 Aligned_cols=286 Identities=13% Similarity=0.039 Sum_probs=244.0
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccC-CHhHHHHHHHHHHHhccHHHHHHHHHHHHhh
Q 002379 499 EKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLALLAL 577 (929)
Q Consensus 499 ~Ai~~~~kal~l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~ 577 (929)
+|+..|.+.-...++.......+|..|+++++|++|.++|+.+-+..| ..+.......++..+.+--+-=..-+..+..
T Consensus 337 ~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~ 416 (638)
T KOG1126|consen 337 EALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDT 416 (638)
T ss_pred HHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhh
Confidence 999999997777888889999999999999999999999999998887 3333444456666666655544556778899
Q ss_pred cCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHH
Q 002379 578 ESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQK 657 (929)
Q Consensus 578 ~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~ 657 (929)
+|+.+ ..|..+|.++..+++++.|++.+ ++++++||+.+-+|..+|.-+....+++
T Consensus 417 ~~~sP------esWca~GNcfSLQkdh~~Aik~f------------------~RAiQldp~faYayTLlGhE~~~~ee~d 472 (638)
T KOG1126|consen 417 DPNSP------ESWCALGNCFSLQKDHDTAIKCF------------------KRAIQLDPRFAYAYTLLGHESIATEEFD 472 (638)
T ss_pred CCCCc------HHHHHhcchhhhhhHHHHHHHHH------------------HHhhccCCccchhhhhcCChhhhhHHHH
Confidence 99999 89999999999999999995555 9999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHHHHHhcCCCCCChHHHHHHHHHH
Q 002379 658 AAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEA 737 (929)
Q Consensus 658 ~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~l~~~l~~~~~~~~~~~~a~~~~e~A 737 (929)
.|+.+|++|+..+|.+..+|+.+|.+|.++++++.|.-.|++|++++|.+
T Consensus 473 ~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~n------------------------------ 522 (638)
T KOG1126|consen 473 KAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSN------------------------------ 522 (638)
T ss_pred hHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccc------------------------------
Confidence 99999999999999999999999999999999999999999999999988
Q ss_pred hhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHH
Q 002379 738 LRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSAS 815 (929)
Q Consensus 738 l~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~--~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 815 (929)
......+|.++.++|+.++|+..|++|+.++ ++-..+..|.+++..+++++|+..++++-+..|+...
T Consensus 523 ----------svi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~ 592 (638)
T KOG1126|consen 523 ----------SVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESS 592 (638)
T ss_pred ----------hhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHH
Confidence 3346778999999999999999999999984 5567788999999999999999988888777766555
Q ss_pred HHHHHhhhCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCch
Q 002379 816 AFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQ 878 (929)
Q Consensus 816 ~~~~lg~~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~ 878 (929)
+ +..+|.+|.+.|+.+.|+..|.-|..++|.-.
T Consensus 593 v------------------------------~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~ 625 (638)
T KOG1126|consen 593 V------------------------------FALLGKIYKRLGNTDLALLHFSWALDLDPKGA 625 (638)
T ss_pred H------------------------------HHHHHHHHHHHccchHHHHhhHHHhcCCCccc
Confidence 5 45566677777777777777777777776543
No 33
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.88 E-value=9.3e-20 Score=207.13 Aligned_cols=304 Identities=14% Similarity=0.051 Sum_probs=226.7
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHhcccC-CHhHHHHHHHHHHHhccHHHHHHHHHHHHhhcCCchhhhccccHHHHH
Q 002379 516 FPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLV 594 (929)
Q Consensus 516 ~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~ll 594 (929)
...+.+|..+...|++++|+..|+++++..| ++..+..+|.++...|++++|+..+++++...+....
T Consensus 36 ~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~----------- 104 (389)
T PRK11788 36 SRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTRE----------- 104 (389)
T ss_pred cHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHH-----------
Confidence 3455667778888888888888888887776 5666777888888888888888888877763211110
Q ss_pred HHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchH
Q 002379 595 KLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEH 674 (929)
Q Consensus 595 ~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~ 674 (929)
.....+..+|.+|...|++++|+..|+++++.+|.+.
T Consensus 105 -------------------------------------------~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~ 141 (389)
T PRK11788 105 -------------------------------------------QRLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFAE 141 (389)
T ss_pred -------------------------------------------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchH
Confidence 0123466778888888888888888888888888888
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch-HHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHH
Q 002379 675 ERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNN 753 (929)
Q Consensus 675 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~~~~~l~~~l~~~~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~ 753 (929)
.++..++.++...|++++|+..++++++..|.. ... ....+..
T Consensus 142 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~------------------------------------~~~~~~~ 185 (389)
T PRK11788 142 GALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE------------------------------------IAHFYCE 185 (389)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH------------------------------------HHHHHHH
Confidence 888888888888888888888888888766644 000 0123566
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCH-HHHHHHh----hhCCH
Q 002379 754 LGSIYVECGKLDQAENCYINALDI--KHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSA-SAFEKRS----EYSDR 826 (929)
Q Consensus 754 lg~~~~~~g~~~eA~~~~~~al~~--~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~lg----~~g~~ 826 (929)
+|.++...|++++|+..|+++++. +...++..+|.++...|++++|++.+++++...|.+. .++..++ ..|++
T Consensus 186 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~ 265 (389)
T PRK11788 186 LAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDE 265 (389)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCH
Confidence 788888888888888888888876 3456778888888888888888888888888777653 3344444 56888
Q ss_pred HHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHH---cCCHHHHHHHHHHH
Q 002379 827 EMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLHLRAAFYES---IGDLTSAIRDSQAA 903 (929)
Q Consensus 827 ~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~la~~~~~---~g~~~~A~~~~~~a 903 (929)
++|+..++++++..|+.. .+..+|.++.+.|++++|+..++++++..|++..+..+...+.. .|+..+|+..+++.
T Consensus 266 ~~A~~~l~~~~~~~p~~~-~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~ 344 (389)
T PRK11788 266 AEGLEFLRRALEEYPGAD-LLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDL 344 (389)
T ss_pred HHHHHHHHHHHHhCCCch-HHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHH
Confidence 888888888888888664 44889999999999999999999999999999877744333332 45888888777766
Q ss_pred h----ccCCCC
Q 002379 904 L----CLDPNH 910 (929)
Q Consensus 904 l----~l~P~~ 910 (929)
+ +.+|++
T Consensus 345 ~~~~~~~~p~~ 355 (389)
T PRK11788 345 VGEQLKRKPRY 355 (389)
T ss_pred HHHHHhCCCCE
Confidence 5 456654
No 34
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.87 E-value=8.5e-19 Score=209.67 Aligned_cols=415 Identities=13% Similarity=-0.042 Sum_probs=301.4
Q ss_pred CCchhhhHHHHHHhhhh--HHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccC-CHhHHHHHHHHH
Q 002379 482 KPTGWMYQERSLYNLGR--EKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLF 558 (929)
Q Consensus 482 ~~~~~~~~~~~l~~~~~--~Ai~~~~kal~l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~ 558 (929)
.+...+.++...+..|+ .|+..|+++++.+|+++.+...++.++...|+.++|+..+++++.-.+ ....+...|.++
T Consensus 33 ~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly 112 (822)
T PRK14574 33 MADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAY 112 (822)
T ss_pred chhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHH
Confidence 45566667777777776 888888888888888864444777778888888888888888882211 222233346688
Q ss_pred HHhccHHHHHHHHHHHHhhcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCC
Q 002379 559 IAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPG 638 (929)
Q Consensus 559 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~~p~ 638 (929)
...|++++|+..|+++++.+|+++ .++..++..+...++.++|...+ .++...+|.
T Consensus 113 ~~~gdyd~Aiely~kaL~~dP~n~------~~l~gLa~~y~~~~q~~eAl~~l------------------~~l~~~dp~ 168 (822)
T PRK14574 113 RNEKRWDQALALWQSSLKKDPTNP------DLISGMIMTQADAGRGGVVLKQA------------------TELAERDPT 168 (822)
T ss_pred HHcCCHHHHHHHHHHHHhhCCCCH------HHHHHHHHHHhhcCCHHHHHHHH------------------HHhcccCcc
Confidence 888888888888888888888887 55556677777778888885555 777777887
Q ss_pred ChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch-HHHH--HHHH
Q 002379 639 KSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFF--LKAY 715 (929)
Q Consensus 639 ~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~~~~--~l~~ 715 (929)
+... ..++.++...++..+|+..++++++.+|++.+++..+..++...|-...|.+..++--...... ..+. ..+.
T Consensus 169 ~~~~-l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a 247 (822)
T PRK14574 169 VQNY-MTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAA 247 (822)
T ss_pred hHHH-HHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHH
Confidence 5443 4455555556777678888888888888888888888888888888888876665432221111 1111 1111
Q ss_pred HHHhcCC-CCCChHHHHHHHHHHhhchhccCc-----h------hHHHHHHHHHHHHcCCHHHHHHHHHHHHcC---CCH
Q 002379 716 ILADTNL-DPESSTYVIQLLEEALRCPSDGLR-----K------GQALNNLGSIYVECGKLDQAENCYINALDI---KHT 780 (929)
Q Consensus 716 ~l~~~~~-~~~~~~~a~~~~e~Al~~~~~al~-----~------~~a~~~lg~~~~~~g~~~eA~~~~~~al~~---~~~ 780 (929)
...+... ............+.|+..+++.+. | ..+....-.++...|++.++++.|+..... -|+
T Consensus 248 ~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~ 327 (822)
T PRK14574 248 EQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPD 327 (822)
T ss_pred HHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCH
Confidence 1111111 111111222244555555554432 2 134455666778899999999999988765 267
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHccC------CH----HHHHHHhhhCCHHHHHHHHHHHHhcCC---------
Q 002379 781 RAHQGLARVYYLKNELKAAYDEMTKLLEKAQY------SA----SAFEKRSEYSDREMAKNDLNMATQLDP--------- 841 (929)
Q Consensus 781 ~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~----~~~~~lg~~g~~~~A~~~~~~al~l~p--------- 841 (929)
.+....|..|...+++++|...|++++...|+ .. ..++..-+.+++++|...+++..+..|
T Consensus 328 y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~ 407 (822)
T PRK14574 328 YARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLP 407 (822)
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCC
Confidence 89999999999999999999999999876532 11 234444488999999999999988544
Q ss_pred ------CCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHH-HHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHH
Q 002379 842 ------LRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLH-LRAAFYESIGDLTSAIRDSQAALCLDPNHMETL 914 (929)
Q Consensus 842 ------~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~-~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~ 914 (929)
+...+...++.++...|++.+|++.+++.+...|.+..+. .+|.++...|...+|...++.++.++|++..+.
T Consensus 408 ~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~ 487 (822)
T PRK14574 408 GKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILE 487 (822)
T ss_pred CCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHH
Confidence 3345677889999999999999999999999999998777 679999999999999999999999999998888
Q ss_pred HHHHHHH
Q 002379 915 DLYNRAR 921 (929)
Q Consensus 915 ~~~~~l~ 921 (929)
..++...
T Consensus 488 ~~~~~~a 494 (822)
T PRK14574 488 RAQAETA 494 (822)
T ss_pred HHHHHHH
Confidence 7766654
No 35
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.87 E-value=1.2e-17 Score=181.44 Aligned_cols=439 Identities=12% Similarity=0.005 Sum_probs=323.2
Q ss_pred HHHHHHHHhhhccCCCchhhhHHHHHHhhhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccC-
Q 002379 468 YSAYKLINSIISEHKPTGWMYQERSLYNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL- 546 (929)
Q Consensus 468 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Ai~~~~kal~l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~- 546 (929)
...+.++++.+|. ....+.+..-+...+.|.-.+.+|++.-|...+.|..++ ++.-|+.|...++++-+.-|
T Consensus 366 ~RVlRKALe~iP~---sv~LWKaAVelE~~~darilL~rAveccp~s~dLwlAla----rLetYenAkkvLNkaRe~ipt 438 (913)
T KOG0495|consen 366 KRVLRKALEHIPR---SVRLWKAAVELEEPEDARILLERAVECCPQSMDLWLALA----RLETYENAKKVLNKAREIIPT 438 (913)
T ss_pred HHHHHHHHHhCCc---hHHHHHHHHhccChHHHHHHHHHHHHhccchHHHHHHHH----HHHHHHHHHHHHHHHHhhCCC
Confidence 3344444444444 222333333444444566666777777776666665443 34456667777777665555
Q ss_pred CHhHHHHHHHHHHHhccHHHHHHHHHHHHhhcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHh-----------hh
Q 002379 547 SVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKL-----------YD 615 (929)
Q Consensus 547 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l-----------~~ 615 (929)
++..|..-+.+--..|+.+.-.++..+.+..-..+..-..+ +.+..-+......|..-.+...+.- ..
T Consensus 439 d~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~r-dqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~ 517 (913)
T KOG0495|consen 439 DREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINR-DQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKS 517 (913)
T ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecH-HHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHh
Confidence 66666666666666676666666666665432222210010 1111111111111111111111110 11
Q ss_pred ccccccc--------cccHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHc
Q 002379 616 RWSSVDD--------IGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDT 687 (929)
Q Consensus 616 ~~~~~~~--------~~~l~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~ 687 (929)
.|.+.++ ..+..+|..+++..|.+-.+|...+.+-...|..++-...+++++...|.....|...+.-+...
T Consensus 518 tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~a 597 (913)
T KOG0495|consen 518 TWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKA 597 (913)
T ss_pred HHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhc
Confidence 1111111 01267888999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhccch-HHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCch---hHHHHHHHHHHHHcCC
Q 002379 688 GHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRK---GQALNNLGSIYVECGK 763 (929)
Q Consensus 688 g~~~eA~~~~~~al~~~p~~-~~~~~l~~~l~~~~~~~~~~~~a~~~~e~Al~~~~~al~~---~~a~~~lg~~~~~~g~ 763 (929)
|+...|...+.++++.+|++ +.|+.......... .+++|...+.++... ...|+.-+.....+++
T Consensus 598 gdv~~ar~il~~af~~~pnseeiwlaavKle~en~-----------e~eraR~llakar~~sgTeRv~mKs~~~er~ld~ 666 (913)
T KOG0495|consen 598 GDVPAARVILDQAFEANPNSEEIWLAAVKLEFEND-----------ELERARDLLAKARSISGTERVWMKSANLERYLDN 666 (913)
T ss_pred CCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccc-----------cHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhh
Confidence 99999999999999999999 88887777776666 778888777777442 3788888999999999
Q ss_pred HHHHHHHHHHHHcC--CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHh----hhCCHHHHHHHHHHHH
Q 002379 764 LDQAENCYINALDI--KHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS----EYSDREMAKNDLNMAT 837 (929)
Q Consensus 764 ~~eA~~~~~~al~~--~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg----~~g~~~~A~~~~~~al 837 (929)
.++|+..++++++. .....|..+|.++..+++.+.|.+.|..-+...|.....|..++ ..|+.-.|...++++.
T Consensus 667 ~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrar 746 (913)
T KOG0495|consen 667 VEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRAR 746 (913)
T ss_pred HHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 99999999999998 55679999999999999999999999999999999999999888 4578899999999999
Q ss_pred hcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHH-------------------------------HHHHH
Q 002379 838 QLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLH-------------------------------LRAAF 886 (929)
Q Consensus 838 ~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~-------------------------------~la~~ 886 (929)
-.+|.++..|.....+-.+.|+.++|.....+|++..|++..++ ..|..
T Consensus 747 lkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~l 826 (913)
T KOG0495|consen 747 LKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKL 826 (913)
T ss_pred hcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHH
Confidence 99999999999999999999999999999999998877663221 23667
Q ss_pred HHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHhhhh
Q 002379 887 YESIGDLTSAIRDSQAALCLDPNHMETLDLYNRARDQAS 925 (929)
Q Consensus 887 ~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~l~~~~~ 925 (929)
+....++++|.+.|+++++++|++.++|...=+.....+
T Consensus 827 fw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG 865 (913)
T KOG0495|consen 827 FWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHG 865 (913)
T ss_pred HHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhC
Confidence 777889999999999999999999999988776654443
No 36
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.87 E-value=1.5e-17 Score=188.51 Aligned_cols=486 Identities=14% Similarity=0.106 Sum_probs=320.9
Q ss_pred HHHHHHhhHHHHhcccHHHHHHHHHHHHhcCccccHH--HHHHHHHHhchHHHHHHH---HHhhhccCCCchhhhHHHHH
Q 002379 419 MLALHQLGCVMFEREEYKDACYYFEAAADAGHIYSLA--GLARAKYKVGQQYSAYKL---INSIISEHKPTGWMYQERSL 493 (929)
Q Consensus 419 a~~~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~~~a--~la~~~~~~g~a~~a~~~---~~~~~~~~~~~~~~~~~~~l 493 (929)
...+...++..+.+|++++|+..+..+++.+|.+..+ .++.+|-++|+...++.- +..+.|+ ++..|...+...
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~-d~e~W~~ladls 217 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK-DYELWKRLADLS 217 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC-ChHHHHHHHHHH
Confidence 3456678889999999999999999999999998877 899999999986665542 3344555 558888777666
Q ss_pred Hhhhh--HHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccCCHhH------HHHHHHHHHHhccHH
Q 002379 494 YNLGR--EKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDC------LELRAWLFIAADDYE 565 (929)
Q Consensus 494 ~~~~~--~Ai~~~~kal~l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~------~~~~a~~~~~~g~~~ 565 (929)
...+. +|+-+|.+|++.+|.+....+.++..|.+.|+...|...|.+++...|..+. ....+..+...++-+
T Consensus 218 ~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e 297 (895)
T KOG2076|consen 218 EQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERE 297 (895)
T ss_pred HhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHH
Confidence 55554 9999999999999999999999999999999999999999999988883332 334466677778889
Q ss_pred HHHHHHHHHHhhcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhc---------c-------------cc-ccc
Q 002379 566 SALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDR---------W-------------SS-VDD 622 (929)
Q Consensus 566 ~A~~~~~~al~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~---------~-------------~~-~~~ 622 (929)
.|++.++.++....+-.. ..-+.+++.++....+++.|...+.-... | .. .++
T Consensus 298 ~a~~~le~~~s~~~~~~~----~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~ 373 (895)
T KOG2076|consen 298 RAAKALEGALSKEKDEAS----LEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKE 373 (895)
T ss_pred HHHHHHHHHHhhcccccc----ccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCC
Confidence 999999999883322221 14455677777777777777655533221 0 00 000
Q ss_pred cc-cHHHHHHHH------------------h-cC---CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCch-HHHHH
Q 002379 623 IG-SLAVINQML------------------I-ND---PGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE-HERLV 678 (929)
Q Consensus 623 ~~-~l~~~~~al------------------~-~~---p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~-~~~~~ 678 (929)
.. .|.++..++ . .+ .+++..++.++.+|...|++.+|+..|..+....+.. ..+|+
T Consensus 374 ~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~ 453 (895)
T KOG2076|consen 374 LSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWY 453 (895)
T ss_pred CCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhH
Confidence 00 011111111 1 11 2345666777777777777777777777766655432 45677
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhccch-HHHHHHHHHHHhcCCCCCChHHH---------------------------
Q 002379 679 YEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYV--------------------------- 730 (929)
Q Consensus 679 ~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~~~~~l~~~l~~~~~~~~~~~~a--------------------------- 730 (929)
.+|.+|..+|.+++|++.|++++...|++ ++...++..+..+|......+..
T Consensus 454 ~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~ 533 (895)
T KOG2076|consen 454 KLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRC 533 (895)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHH
Confidence 77777777777777777777777777777 67666666666655110000000
Q ss_pred -----HHHHHHHhhc--------------hh---------------------------------------ccCch-----
Q 002379 731 -----IQLLEEALRC--------------PS---------------------------------------DGLRK----- 747 (929)
Q Consensus 731 -----~~~~e~Al~~--------------~~---------------------------------------~al~~----- 747 (929)
.++.++-+.. +. +.+..
T Consensus 534 d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~ 613 (895)
T KOG2076|consen 534 DILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFR 613 (895)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhh
Confidence 0000000000 00 00000
Q ss_pred --------h----HHHHHHHHHHHHcCCHHHHHHHHHHHHcC----CCHH----HHHHHHHHHHHhCCHHHHHHHHHHHH
Q 002379 748 --------G----QALNNLGSIYVECGKLDQAENCYINALDI----KHTR----AHQGLARVYYLKNELKAAYDEMTKLL 807 (929)
Q Consensus 748 --------~----~a~~~lg~~~~~~g~~~eA~~~~~~al~~----~~~~----a~~~la~~~~~~g~~~~A~~~~~~al 807 (929)
. +....+...+.+.+++++|......++.. .++. ..+....+-...+++..|...++..+
T Consensus 614 ~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i 693 (895)
T KOG2076|consen 614 AVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVI 693 (895)
T ss_pred hhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 0 22334555667788888888888888776 2222 22233344566788888888888887
Q ss_pred HH-----ccCCHHHHH-HH------h--------------------------------hhCCHHHHHHHHHHHHhcCCCC
Q 002379 808 EK-----AQYSASAFE-KR------S--------------------------------EYSDREMAKNDLNMATQLDPLR 843 (929)
Q Consensus 808 ~~-----~p~~~~~~~-~l------g--------------------------------~~g~~~~A~~~~~~al~l~p~~ 843 (929)
.. +|.....|. .. + ..+.+.-|+..|-++...+|++
T Consensus 694 ~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~ 773 (895)
T KOG2076|consen 694 TQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDS 773 (895)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCC
Confidence 76 443333333 10 0 1255688999999999999998
Q ss_pred cHHHHHHHHHHHhc--C--------CHHHHHHHHHHHHhcCCC---chHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 002379 844 TYPYRYRAAVLMDD--Q--------KEVEAVEELSKAIAFKPD---LQMLHLRAAFYESIGDLTSAIRDSQAALCLDPN 909 (929)
Q Consensus 844 ~~~~~~la~~~~~~--g--------~~~eA~~~l~kal~~~p~---~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~ 909 (929)
|..-..+|.++..+ + ..-+++..+.+..++... -...|++|.+|...|=..-|+.+|+++|.+.|.
T Consensus 774 Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~p~ 852 (895)
T KOG2076|consen 774 PLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVSPK 852 (895)
T ss_pred cHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCCcc
Confidence 88877777655432 2 234567777777666544 246779999999999999999999999999764
No 37
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.87 E-value=1.1e-16 Score=174.33 Aligned_cols=478 Identities=15% Similarity=0.026 Sum_probs=363.6
Q ss_pred hHHHHHHHHHhhcchHHHHHHHHHHHhhHHHHhcccHHHHHHHHHHHHhcCccccHH--HHHHHHHHhchH---HHHHHH
Q 002379 399 NTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGHIYSLA--GLARAKYKVGQQ---YSAYKL 473 (929)
Q Consensus 399 ~~~~~~Le~l~~~~~~~~~~a~~~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~~~a--~la~~~~~~g~a---~~a~~~ 473 (929)
.++..+|+++++|.+.......+| -+..-|+.|.+.++++-+.-|..... ..++.--..|.. .....+
T Consensus 393 ~darilL~rAveccp~s~dLwlAl-------arLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~r 465 (913)
T KOG0495|consen 393 EDARILLERAVECCPQSMDLWLAL-------ARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDR 465 (913)
T ss_pred HHHHHHHHHHHHhccchHHHHHHH-------HHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 348889999999998776544443 34467999999999999997766554 223333333432 222222
Q ss_pred HHhhhccC----CCchhhhHHHHHHhhhh--HHHHHHHHHHhc---CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Q 002379 474 INSIISEH----KPTGWMYQERSLYNLGR--EKIVDLNYASEL---DPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVF 544 (929)
Q Consensus 474 ~~~~~~~~----~~~~~~~~~~~l~~~~~--~Ai~~~~kal~l---~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~ 544 (929)
.+..+... +...|+..+...-..+- ..-......+.+ ..+....|..-+..+.+.+-++-|+..|..+++.
T Consensus 466 gl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv 545 (913)
T KOG0495|consen 466 GLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV 545 (913)
T ss_pred HHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh
Confidence 22222221 12455555444333322 112222233333 2344567888899999999999999999999988
Q ss_pred cCCHhH-HHHHHHHHHHhccHHHHHHHHHHHHhhcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhcccccccc
Q 002379 545 KLSVDC-LELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDI 623 (929)
Q Consensus 545 ~~~~~~-~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~ 623 (929)
.|.... |...+..--..|..++-...+++++...|... ..+.+.+..+...|+...|...+
T Consensus 546 fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae------~lwlM~ake~w~agdv~~ar~il------------ 607 (913)
T KOG0495|consen 546 FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAE------ILWLMYAKEKWKAGDVPAARVIL------------ 607 (913)
T ss_pred ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcch------hHHHHHHHHHHhcCCcHHHHHHH------------
Confidence 884444 44444444556888888899999999999777 44444555555556666665555
Q ss_pred ccHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 002379 624 GSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISI 703 (929)
Q Consensus 624 ~~l~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~ 703 (929)
.++++.+|++-.+|+..-.+.....+++.|...|.++....|. ..+|+.-+.....+++.++|+..++++++.
T Consensus 608 ------~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgT-eRv~mKs~~~er~ld~~eeA~rllEe~lk~ 680 (913)
T KOG0495|consen 608 ------DQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGT-ERVWMKSANLERYLDNVEEALRLLEEALKS 680 (913)
T ss_pred ------HHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCc-chhhHHHhHHHHHhhhHHHHHHHHHHHHHh
Confidence 8999999999999999999999999999999999999988777 778888899999999999999999999999
Q ss_pred ccch-HHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCch----hHHHHHHHHHHHHcCCHHHHHHHHHHHHcCC
Q 002379 704 ERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRK----GQALNNLGSIYVECGKLDQAENCYINALDIK 778 (929)
Q Consensus 704 ~p~~-~~~~~l~~~l~~~~~~~~~~~~a~~~~e~Al~~~~~al~~----~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~ 778 (929)
.|++ ..|..+|.++...+ ..+.|.+.|...++. ...|..++.+-...|+.-.|...++++.-.+
T Consensus 681 fp~f~Kl~lmlGQi~e~~~-----------~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN 749 (913)
T KOG0495|consen 681 FPDFHKLWLMLGQIEEQME-----------NIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN 749 (913)
T ss_pred CCchHHHHHHHhHHHHHHH-----------HHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC
Confidence 9999 88888998888877 888888888888763 3789999999999999999999999998774
Q ss_pred --CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHhhhCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHh
Q 002379 779 --HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMD 856 (929)
Q Consensus 779 --~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~ 856 (929)
+...|....+.-.+.|+.+.|...+.++++..|++...|...-.+.-..+-......|++.-..++..+...|.++..
T Consensus 750 Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~ 829 (913)
T KOG0495|consen 750 PKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWS 829 (913)
T ss_pred CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHH
Confidence 445777777888899999999999999999999999888766532111111333445555566788999999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCchHHH-HHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHH
Q 002379 857 DQKEVEAVEELSKAIAFKPDLQMLH-LRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNR 919 (929)
Q Consensus 857 ~g~~~eA~~~l~kal~~~p~~~~~~-~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~ 919 (929)
..++++|.+.|.++++.+|++...+ +.-.++...|.-++-.+.|.+....+|.|.+.|....+
T Consensus 830 e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~avSK 893 (913)
T KOG0495|consen 830 EKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQAVSK 893 (913)
T ss_pred HHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHHHhh
Confidence 9999999999999999999997655 56778888999999999999999999999998876654
No 38
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.86 E-value=2.3e-19 Score=203.83 Aligned_cols=275 Identities=18% Similarity=0.032 Sum_probs=226.0
Q ss_pred cHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 002379 589 SGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARN 668 (929)
Q Consensus 589 ~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~ 668 (929)
...+..|..+...|++++|...+ .++++.+|+++.++..+|.++...|++++|+..+++++.
T Consensus 36 ~~~y~~g~~~~~~~~~~~A~~~~------------------~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 97 (389)
T PRK11788 36 SRDYFKGLNFLLNEQPDKAIDLF------------------IEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLS 97 (389)
T ss_pred cHHHHHHHHHHhcCChHHHHHHH------------------HHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhc
Confidence 34445566666777777774444 788888888888888888888888888888888887776
Q ss_pred cCCch----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhcc
Q 002379 669 HSSSE----HERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDG 744 (929)
Q Consensus 669 ~~p~~----~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~l~~~l~~~~~~~~~~~~a~~~~e~Al~~~~~a 744 (929)
..+.. ...+..+|.+|...|++++|+..|+++++..|..
T Consensus 98 ~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~------------------------------------- 140 (389)
T PRK11788 98 RPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFA------------------------------------- 140 (389)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcch-------------------------------------
Confidence 53322 2456777888888888888888888877765544
Q ss_pred CchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCH-------HHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHH
Q 002379 745 LRKGQALNNLGSIYVECGKLDQAENCYINALDIKHT-------RAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAF 817 (929)
Q Consensus 745 l~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~~-------~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 817 (929)
..++..++.++...|++++|++.++++++..+. ..+..+|.++...|++++|+..++++++..|++..++
T Consensus 141 ---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 217 (389)
T PRK11788 141 ---EGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRAS 217 (389)
T ss_pred ---HHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHH
Confidence 345788899999999999999999999887321 2567899999999999999999999999999999888
Q ss_pred HHHh----hhCCHHHHHHHHHHHHhcCCCC-cHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHcCC
Q 002379 818 EKRS----EYSDREMAKNDLNMATQLDPLR-TYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLHLRAAFYESIGD 892 (929)
Q Consensus 818 ~~lg----~~g~~~~A~~~~~~al~l~p~~-~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~la~~~~~~g~ 892 (929)
..+| ..|++++|+..++++++.+|.+ ..++..++.+|...|++++|+..++++++..|+...+..++.++...|+
T Consensus 218 ~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~ 297 (389)
T PRK11788 218 ILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEG 297 (389)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCC
Confidence 8887 5799999999999999998866 4667899999999999999999999999999988777778999999999
Q ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 002379 893 LTSAIRDSQAALCLDPNHMETLDLYNRAR 921 (929)
Q Consensus 893 ~~~A~~~~~~al~l~P~~~~a~~~~~~l~ 921 (929)
+++|+..++++++.+|++.....++....
T Consensus 298 ~~~A~~~l~~~l~~~P~~~~~~~l~~~~~ 326 (389)
T PRK11788 298 PEAAQALLREQLRRHPSLRGFHRLLDYHL 326 (389)
T ss_pred HHHHHHHHHHHHHhCcCHHHHHHHHHHhh
Confidence 99999999999999999987776665433
No 39
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=1.3e-17 Score=172.53 Aligned_cols=286 Identities=16% Similarity=0.098 Sum_probs=252.5
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch-H
Q 002379 630 NQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-E 708 (929)
Q Consensus 630 ~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~ 708 (929)
-.-...-|++..++..+|.+++..|++.+|+..|+++.-++|......-..|.++...|+++.-.......+.+.... .
T Consensus 222 le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~ 301 (564)
T KOG1174|consen 222 LHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTAS 301 (564)
T ss_pred HHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchh
Confidence 455556688899999999999999999999999999999999998888889999999999998888888888877655 6
Q ss_pred HHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCch----hHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCH--HH
Q 002379 709 AFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRK----GQALNNLGSIYVECGKLDQAENCYINALDIKHT--RA 782 (929)
Q Consensus 709 ~~~~l~~~l~~~~~~~~~~~~a~~~~e~Al~~~~~al~~----~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~~--~a 782 (929)
-|+.-+..+.... +++.|+..-.+.++. .+++...|.++...|+.++|+-.|+.|..+.|. +.
T Consensus 302 ~wfV~~~~l~~~K-----------~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~ 370 (564)
T KOG1174|consen 302 HWFVHAQLLYDEK-----------KFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEI 370 (564)
T ss_pred hhhhhhhhhhhhh-----------hHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHH
Confidence 6666666666655 777888777777652 388999999999999999999999999999644 68
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHh------hhCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHh
Q 002379 783 HQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS------EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMD 856 (929)
Q Consensus 783 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg------~~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~ 856 (929)
|.++-.+|...|++.+|....+.++...|+++..+...| .-.-.++|...+++++++.|....+-..+|.++..
T Consensus 371 Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~ 450 (564)
T KOG1174|consen 371 YRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQV 450 (564)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999988887 12345899999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHhhhhh
Q 002379 857 DQKEVEAVEELSKAIAFKPDLQMLHLRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNRARDQASH 926 (929)
Q Consensus 857 ~g~~~eA~~~l~kal~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~l~~~~~~ 926 (929)
.|++++++..+++++...|+......+|.++...+.+.+|..+|..||.+||++..+...+.++++...+
T Consensus 451 Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~lEK~~~~ 520 (564)
T KOG1174|consen 451 EGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLRLLEKSDDE 520 (564)
T ss_pred hCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHHHHHhccCC
Confidence 9999999999999999999988777899999999999999999999999999999999999998876543
No 40
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.83 E-value=4.6e-17 Score=181.53 Aligned_cols=423 Identities=14% Similarity=0.045 Sum_probs=292.5
Q ss_pred HHHHHHHhhHHHHhcccHHHHHHHHHHHHhcCccccHHHHHHHHHHhchHHHHHHHHHhhhccCCCchhhhHHHHHHhhh
Q 002379 418 RMLALHQLGCVMFEREEYKDACYYFEAAADAGHIYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNLG 497 (929)
Q Consensus 418 ~a~~~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~~~a~la~~~~~~g~a~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 497 (929)
.+..|-.+.-.....|+|+.+.++|++++...-. ..+.|+..+.++...+
T Consensus 322 d~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~------------------------------~~e~w~~~als~saag 371 (799)
T KOG4162|consen 322 DAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFG------------------------------EHERWYQLALSYSAAG 371 (799)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh------------------------------hHHHHHHHHHHHHHhc
Confidence 3456666777778889999999999988754111 1122333344444444
Q ss_pred h--HHHHHHHHHHhcC--CCChHHHHHHHHHH-HHhCCHHHHHHHHHHHhcccC------CHhHHHHHHHHHHH------
Q 002379 498 R--EKIVDLNYASELD--PTLSFPYKYRAVAK-MEEGQIRAAISEIDRIIVFKL------SVDCLELRAWLFIA------ 560 (929)
Q Consensus 498 ~--~Ai~~~~kal~l~--P~~~~a~~~~a~~~-~~~g~~~~A~~~~~~al~~~~------~~~~~~~~a~~~~~------ 560 (929)
. .|+..+++..... |+++..+...+.++ ...+.+++++.+..+++..-. .|..+...|.+|-.
T Consensus 372 ~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~ 451 (799)
T KOG4162|consen 372 SDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQAN 451 (799)
T ss_pred cchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCC
Confidence 4 7888888888887 87787777666554 567899999999999986222 45567777777632
Q ss_pred -----hccHHHHHHHHHHHHhhcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhc
Q 002379 561 -----ADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLIN 635 (929)
Q Consensus 561 -----~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~ 635 (929)
.....+++..++++++.+|+|+ .+.+.++.-|...++.+.|.... .++++.
T Consensus 452 ~~seR~~~h~kslqale~av~~d~~dp------~~if~lalq~A~~R~l~sAl~~~------------------~eaL~l 507 (799)
T KOG4162|consen 452 LKSERDALHKKSLQALEEAVQFDPTDP------LVIFYLALQYAEQRQLTSALDYA------------------REALAL 507 (799)
T ss_pred ChHHHHHHHHHHHHHHHHHHhcCCCCc------hHHHHHHHHHHHHHhHHHHHHHH------------------HHHHHh
Confidence 2345677888888888888888 67777777777777777775555 777777
Q ss_pred -CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch-HHHHHH
Q 002379 636 -DPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLK 713 (929)
Q Consensus 636 -~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~~~~~l 713 (929)
..+++.+|..++.++...+++.+|+...+.+++-.|+|.........+-...++.++|+......+.+-... .+-..+
T Consensus 508 ~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~ 587 (799)
T KOG4162|consen 508 NRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTL 587 (799)
T ss_pred cCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhh
Confidence 445677888888888888888888888888888888877777777777777788888888777776643322 111100
Q ss_pred H--HHHH---hcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC-CC-------H
Q 002379 714 A--YILA---DTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI-KH-------T 780 (929)
Q Consensus 714 ~--~~l~---~~~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~-~~-------~ 780 (929)
+ ..+. ..+..++....++.....+ ..+...-...-..+.. +.+.... ++ .
T Consensus 588 ~~g~~~~lk~~l~la~~q~~~a~s~sr~l--------------s~l~a~~~~~~~se~~---Lp~s~~~~~~~~~~~~~~ 650 (799)
T KOG4162|consen 588 DEGKLLRLKAGLHLALSQPTDAISTSRYL--------------SSLVASQLKSAGSELK---LPSSTVLPGPDSLWYLLQ 650 (799)
T ss_pred hhhhhhhhhcccccCcccccccchhhHHH--------------HHHHHhhhhhcccccc---cCcccccCCCCchHHHHH
Confidence 0 0000 0000000111111011110 0010000000011111 1100011 11 1
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHh----hhCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHh
Q 002379 781 RAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS----EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMD 856 (929)
Q Consensus 781 ~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg----~~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~ 856 (929)
..|...+..+.+.++.++|...+.++-.+.|..+..|+.+| ..|+..+|.+.|..|+.++|+.+.....+|.++.+
T Consensus 651 ~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle 730 (799)
T KOG4162|consen 651 KLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLE 730 (799)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 36778888999999999999999999999999999999998 56899999999999999999999999999999999
Q ss_pred cCCHHHHHH--HHHHHHhcCCCchH-HHHHHHHHHHcCCHHHHHHHHHHHhccCCCCH
Q 002379 857 DQKEVEAVE--ELSKAIAFKPDLQM-LHLRAAFYESIGDLTSAIRDSQAALCLDPNHM 911 (929)
Q Consensus 857 ~g~~~eA~~--~l~kal~~~p~~~~-~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~ 911 (929)
.|+..-|.. .+..+++++|.++. |+.+|.++.++|+.++|.+.|..++++++.+|
T Consensus 731 ~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 731 LGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNP 788 (799)
T ss_pred hCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCC
Confidence 998888887 99999999998875 55889999999999999999999999998876
No 41
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.83 E-value=1.2e-17 Score=168.93 Aligned_cols=358 Identities=17% Similarity=0.134 Sum_probs=267.8
Q ss_pred HHHHHHHhhHHHHhcccHHHHHHHHHHHHhcCccccHHHHHHHHHHhchHHHHHHHHHhhhccCCCchhhhHHHHHHhhh
Q 002379 418 RMLALHQLGCVMFEREEYKDACYYFEAAADAGHIYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNLG 497 (929)
Q Consensus 418 ~a~~~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~~~a~la~~~~~~g~a~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 497 (929)
...-.+.+|..++.+|++.+|+..|..|++.+|.+-. ++++++..+.++. ..
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~-----aifrRaT~yLAmG-----------------------ks 88 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQ-----AIFRRATVYLAMG-----------------------KS 88 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHH-----HHHHHHHHHhhhc-----------------------CC
Confidence 4456778999999999999999999999999998776 5566655555444 34
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccCCH----hH------------HHHHHHHHHHh
Q 002379 498 REKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSV----DC------------LELRAWLFIAA 561 (929)
Q Consensus 498 ~~Ai~~~~kal~l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~----~~------------~~~~a~~~~~~ 561 (929)
+-|+.++.+++++.|+...+...+|.+++++|++++|...|+++++-+|+. +. +......+...
T Consensus 89 k~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~ 168 (504)
T KOG0624|consen 89 KAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGS 168 (504)
T ss_pred ccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcC
Confidence 478999999999999999999999999999999999999999999877721 12 11223334567
Q ss_pred ccHHHHHHHHHHHHhhcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChH
Q 002379 562 DDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSF 641 (929)
Q Consensus 562 g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~~p~~~~ 641 (929)
|++..|+.....++++.|-+. ..+...+.+|...|....|+.-+ ..+-++..++.+
T Consensus 169 GD~~~ai~~i~~llEi~~Wda------~l~~~Rakc~i~~~e~k~AI~Dl------------------k~askLs~DnTe 224 (504)
T KOG0624|consen 169 GDCQNAIEMITHLLEIQPWDA------SLRQARAKCYIAEGEPKKAIHDL------------------KQASKLSQDNTE 224 (504)
T ss_pred CchhhHHHHHHHHHhcCcchh------HHHHHHHHHHHhcCcHHHHHHHH------------------HHHHhccccchH
Confidence 999999999999999999988 66777889999999988884444 888889999999
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHH------------HHHHHHHcCCHHHHHHHHHHHHhhccch-H
Q 002379 642 LRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVY------------EGWILYDTGHREEALSRAEKSISIERTF-E 708 (929)
Q Consensus 642 ~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~------------lg~~~~~~g~~~eA~~~~~~al~~~p~~-~ 708 (929)
.++.++.+++..|+.+.++...+..++++|++...+-. -+.-..+.++|.++++..++.++.+|.. .
T Consensus 225 ~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ 304 (504)
T KOG0624|consen 225 GHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETM 304 (504)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccc
Confidence 99999999999999999999999999999997443311 1333455666777777777777766653 1
Q ss_pred HHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcCC--CHHHHHHH
Q 002379 709 AFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGL 786 (929)
Q Consensus 709 ~~~~l~~~l~~~~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~--~~~a~~~l 786 (929)
.. -.....+..++...|++.+|+....+++.++ +.+++...
T Consensus 305 ir-------------------------------------~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dR 347 (504)
T KOG0624|consen 305 IR-------------------------------------YNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDR 347 (504)
T ss_pred ee-------------------------------------eeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHH
Confidence 00 1223445567778888999999999999884 45688888
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHhhhCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHH
Q 002379 787 ARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEE 866 (929)
Q Consensus 787 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~ 866 (929)
|.+|.....|+.|+..|+++.+.++++..+...+ +.|....+++- .-+.|..||. - +.-.-.+-.+.
T Consensus 348 AeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGl------e~Akrlkkqs~-----kRDYYKILGV-k-RnAsKqEI~KA 414 (504)
T KOG0624|consen 348 AEAYLGDEMYDDAIHDYEKALELNESNTRAREGL------ERAKRLKKQSG-----KRDYYKILGV-K-RNASKQEITKA 414 (504)
T ss_pred HHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHH------HHHHHHHHHhc-----cchHHHHhhh-c-ccccHHHHHHH
Confidence 8888888889999999999999988887664433 33333333222 2223444442 1 22234455556
Q ss_pred HHHH-HhcCCCc
Q 002379 867 LSKA-IAFKPDL 877 (929)
Q Consensus 867 l~ka-l~~~p~~ 877 (929)
|+++ .+..|++
T Consensus 415 YRKlAqkWHPDN 426 (504)
T KOG0624|consen 415 YRKLAQKWHPDN 426 (504)
T ss_pred HHHHHHhcCCcc
Confidence 6654 4567766
No 42
>PLN03077 Protein ECB2; Provisional
Probab=99.82 E-value=8.3e-17 Score=200.80 Aligned_cols=453 Identities=12% Similarity=-0.000 Sum_probs=297.0
Q ss_pred HhhHHHHhcccHHHHHHHHHHHHhcCccccHHHHHHHHHHhchHHHHHHHHHhhhcc-CCCch--h--hhHHHHHHhhhh
Q 002379 424 QLGCVMFEREEYKDACYYFEAAADAGHIYSLAGLARAKYKVGQQYSAYKLINSIISE-HKPTG--W--MYQERSLYNLGR 498 (929)
Q Consensus 424 ~lG~~~~~~g~y~~A~~~f~~al~~~~~~~~a~la~~~~~~g~a~~a~~~~~~~~~~-~~~~~--~--~~~~~~l~~~~~ 498 (929)
.+-..|.+.|++++|...|++....+. ..+..+...|.+.|...++++........ ..|.. + +..+.......+
T Consensus 227 ~Li~~y~k~g~~~~A~~lf~~m~~~d~-~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~ 305 (857)
T PLN03077 227 ALITMYVKCGDVVSARLVFDRMPRRDC-ISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDER 305 (857)
T ss_pred HHHHHHhcCCCHHHHHHHHhcCCCCCc-chhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChH
Confidence 344455555666666666665443222 22334455555555544333332222211 11111 1 111122222233
Q ss_pred HHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccCCHhHHHHHHHHHHHhccHHHHHHHHHHHHhh
Q 002379 499 EKIVDLNYASELD-PTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLAL 577 (929)
Q Consensus 499 ~Ai~~~~kal~l~-P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~ 577 (929)
.|.+.+..+.+.. +.+...|..+...|.+.|++++|...|++.. .++...|..+...|.+.|++++|+..|++..+.
T Consensus 306 ~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~--~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~ 383 (857)
T PLN03077 306 LGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME--TKDAVSWTAMISGYEKNGLPDKALETYALMEQD 383 (857)
T ss_pred HHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC--CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 5666666665543 3356778888888999999999999999875 456667888888889999999999999887654
Q ss_pred --cCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcC-CCChHHHHHHHHHHHHhc
Q 002379 578 --ESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLIND-PGKSFLRFRQSLLLLRLN 654 (929)
Q Consensus 578 --~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~~-p~~~~~~~~lg~~~~~~g 654 (929)
.|+...+ ..+-..+...|+++.|.... ..+.+.. ..+..++..+...|.+.|
T Consensus 384 g~~Pd~~t~-------~~ll~a~~~~g~~~~a~~l~------------------~~~~~~g~~~~~~~~n~Li~~y~k~g 438 (857)
T PLN03077 384 NVSPDEITI-------ASVLSACACLGDLDVGVKLH------------------ELAERKGLISYVVVANALIEMYSKCK 438 (857)
T ss_pred CCCCCceeH-------HHHHHHHhccchHHHHHHHH------------------HHHHHhCCCcchHHHHHHHHHHHHcC
Confidence 3555422 22233456667777775554 5555543 234567778888899999
Q ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-ccchHHHHHHHHHHHhcCCCCCChHHHHHH
Q 002379 655 CQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISI-ERTFEAFFLKAYILADTNLDPESSTYVIQL 733 (929)
Q Consensus 655 ~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~-~p~~~~~~~l~~~l~~~~~~~~~~~~a~~~ 733 (929)
++++|.+.|++..+ .+...|..+...|.+.|+.++|+..|++.... .|+...+..+..++...+ .
T Consensus 439 ~~~~A~~vf~~m~~---~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g-----------~ 504 (857)
T PLN03077 439 CIDKALEVFHNIPE---KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIG-----------A 504 (857)
T ss_pred CHHHHHHHHHhCCC---CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhc-----------h
Confidence 99999999887643 34567888888888999999999999888753 454466666666666665 5
Q ss_pred HHHHhhchhccCch-----hHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 002379 734 LEEALRCPSDGLRK-----GQALNNLGSIYVECGKLDQAENCYINALDIKHTRAHQGLARVYYLKNELKAAYDEMTKLLE 808 (929)
Q Consensus 734 ~e~Al~~~~~al~~-----~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~ 808 (929)
++.+.+.....++. ...++.+-..|.+.|++++|...|+.. ..+..+|..+...|.+.|+.++|++.|++..+
T Consensus 505 l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~ 582 (857)
T PLN03077 505 LMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVE 582 (857)
T ss_pred HHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55555544444321 245666778888888888888888876 44566788888888888888888888888776
Q ss_pred H--ccCCHHHHHH---HhhhCCHHHHHHHHHHHHhcCC--CCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHH
Q 002379 809 K--AQYSASAFEK---RSEYSDREMAKNDLNMATQLDP--LRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLH 881 (929)
Q Consensus 809 ~--~p~~~~~~~~---lg~~g~~~~A~~~~~~al~l~p--~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~ 881 (929)
. .|+....... .+..|..++|...|+...+..+ -+...|..+..++.+.|++++|.+.+++. ...|+...|.
T Consensus 583 ~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd~~~~~ 661 (857)
T PLN03077 583 SGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-PITPDPAVWG 661 (857)
T ss_pred cCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCCHHHHH
Confidence 3 3554332222 2266888888888888774332 24467778888888888888888888765 4667766666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 002379 882 LRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNRAR 921 (929)
Q Consensus 882 ~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~l~ 921 (929)
.+-..+...|+.+.|....+++++++|++...+..+..+.
T Consensus 662 aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~y 701 (857)
T PLN03077 662 ALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLY 701 (857)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHH
Confidence 5544566678888888888888888888887777766554
No 43
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=7.6e-18 Score=181.30 Aligned_cols=386 Identities=17% Similarity=0.167 Sum_probs=263.8
Q ss_pred HHHHHHhhhh--HHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccC-CHhHHHHHHHHHHHhccHH
Q 002379 489 QERSLYNLGR--EKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYE 565 (929)
Q Consensus 489 ~~~~l~~~~~--~Ai~~~~kal~l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~~g~~~ 565 (929)
+|...+..++ .|+..|..+|.++|.+...|.++..+|..+|+|++|++.-.+.++++| -+..|...|..+.-+|+|+
T Consensus 8 kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~ 87 (539)
T KOG0548|consen 8 KGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYE 87 (539)
T ss_pred HHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHH
Confidence 3444454555 999999999999999999999999999999999999999999999998 5667999999999999999
Q ss_pred HHHHHHHHHHhhcCCchhhhccccHHHHHHHHH----HhhcccchHHHHHHhhhccccccccccHHHHH---HHHhcCCC
Q 002379 566 SALRDTLALLALESNYMMFHGRVSGDHLVKLLN----HHVRSWSPADCWIKLYDRWSSVDDIGSLAVIN---QMLINDPG 638 (929)
Q Consensus 566 ~A~~~~~~al~~~p~~~~~~~~~~a~~ll~~~~----~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~---~al~~~p~ 638 (929)
+|+..|.+.|+.+|++... ..-+..++ .....+....-|..+...- ......+-..|. +.+..+|.
T Consensus 88 eA~~ay~~GL~~d~~n~~L------~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p-~t~~~~~~~~~~~~l~~~~~~p~ 160 (539)
T KOG0548|consen 88 EAILAYSEGLEKDPSNKQL------KTGLAQAYLEDYAADQLFTKPYFHEKLANLP-LTNYSLSDPAYVKILEIIQKNPT 160 (539)
T ss_pred HHHHHHHHHhhcCCchHHH------HHhHHHhhhHHHHhhhhccCcHHHHHhhcCh-hhhhhhccHHHHHHHHHhhcCcH
Confidence 9999999999999999933 22233332 1111111111111110000 000000112223 33334444
Q ss_pred ChHHHHHHHHHHHHhcCHHHHH--HHHHHHHh-----cCC------------c---------hHHHHHHHHHHHHHcCCH
Q 002379 639 KSFLRFRQSLLLLRLNCQKAAM--RCLRLARN-----HSS------------S---------EHERLVYEGWILYDTGHR 690 (929)
Q Consensus 639 ~~~~~~~lg~~~~~~g~~~~A~--~~l~~al~-----~~p------------~---------~~~~~~~lg~~~~~~g~~ 690 (929)
+...+..--.+....|.....- ..+..... ..| + .......+|...+...++
T Consensus 161 ~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f 240 (539)
T KOG0548|consen 161 SLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDF 240 (539)
T ss_pred hhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhH
Confidence 3333222111111111000000 00000000 011 0 122346678888888888
Q ss_pred HHHHHHHHHHHhhccchHHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHH
Q 002379 691 EEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENC 770 (929)
Q Consensus 691 ~eA~~~~~~al~~~p~~~~~~~l~~~l~~~~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~ 770 (929)
+.|++.|..++.++ .. ...+++.+.+|+..|.+.+.+..
T Consensus 241 ~~a~q~y~~a~el~-~~----------------------------------------it~~~n~aA~~~e~~~~~~c~~~ 279 (539)
T KOG0548|consen 241 ETAIQHYAKALELA-TD----------------------------------------ITYLNNIAAVYLERGKYAECIEL 279 (539)
T ss_pred HHHHHHHHHHHhHh-hh----------------------------------------hHHHHHHHHHHHhccHHHHhhcc
Confidence 88888888888877 44 12245566666666666666666
Q ss_pred HHHHHcCC-C--------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHhhhCCHHHHHHHHHHHHhcCC
Q 002379 771 YINALDIK-H--------TRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDP 841 (929)
Q Consensus 771 ~~~al~~~-~--------~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~g~~~~A~~~~~~al~l~p 841 (929)
...+++.+ . ..+...+|..|...++++.|+.+|.+++..... ++... .....++++...+...-++|
T Consensus 280 c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt-~~~ls---~lk~~Ek~~k~~e~~a~~~p 355 (539)
T KOG0548|consen 280 CEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRT-PDLLS---KLKEAEKALKEAERKAYINP 355 (539)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC-HHHHH---HHHHHHHHHHHHHHHHhhCh
Confidence 66665551 1 123444778899999999999999998876544 22222 23455778888888888889
Q ss_pred CCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHH-HHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHH
Q 002379 842 LRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLH-LRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNRA 920 (929)
Q Consensus 842 ~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~-~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~l 920 (929)
.-..--...|..++..|+|..|+..|.++|..+|+++.+| ++|.+|.++|++..|+.+.+++++++|++..++...+.+
T Consensus 356 e~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~a 435 (539)
T KOG0548|consen 356 EKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAA 435 (539)
T ss_pred hHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHH
Confidence 8888888899999999999999999999999999999888 899999999999999999999999999999999888887
Q ss_pred Hhhhhh
Q 002379 921 RDQASH 926 (929)
Q Consensus 921 ~~~~~~ 926 (929)
.....+
T Consensus 436 l~~mk~ 441 (539)
T KOG0548|consen 436 LRAMKE 441 (539)
T ss_pred HHHHHH
Confidence 765544
No 44
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.82 E-value=3.2e-16 Score=190.91 Aligned_cols=441 Identities=10% Similarity=-0.039 Sum_probs=314.9
Q ss_pred HHhhHHHHhcccHHHHHHHHHHHHhcCccc----cHHHHHHHHHHhchHH---HHHHHHHhhhccCCCchhhhHHHHHHh
Q 002379 423 HQLGCVMFEREEYKDACYYFEAAADAGHIY----SLAGLARAKYKVGQQY---SAYKLINSIISEHKPTGWMYQERSLYN 495 (929)
Q Consensus 423 ~~lG~~~~~~g~y~~A~~~f~~al~~~~~~----~~a~la~~~~~~g~a~---~a~~~~~~~~~~~~~~~~~~~~~~l~~ 495 (929)
..+-..+...|++++|+..|+.+....+.. ....+...+...+... ..+..+...--..+...+......+..
T Consensus 91 ~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k 170 (697)
T PLN03081 91 CSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVK 170 (697)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhc
Confidence 344455677889999999998877654321 1124444444444432 222222221111112222223333333
Q ss_pred hhh--HHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccC--CHhHHHHHHHHHHHhccHHHHHHHH
Q 002379 496 LGR--EKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL--SVDCLELRAWLFIAADDYESALRDT 571 (929)
Q Consensus 496 ~~~--~Ai~~~~kal~l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~a~~~~~~g~~~~A~~~~ 571 (929)
.++ +|...|++..+ | +...|..+...|.+.|++++|+..|+++.+... +...+..+...+...|+...+...+
T Consensus 171 ~g~~~~A~~lf~~m~~--~-~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~ 247 (697)
T PLN03081 171 CGMLIDARRLFDEMPE--R-NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLH 247 (697)
T ss_pred CCCHHHHHHHHhcCCC--C-CeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHH
Confidence 333 66777766543 2 455677777777777888888888777765443 3344555556666677777777776
Q ss_pred HHHHhhcCC-chhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHH
Q 002379 572 LALLALESN-YMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLL 650 (929)
Q Consensus 572 ~~al~~~p~-~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~lg~~~ 650 (929)
..+++..-. +. ..+..+...|...|++++|...+ +++ .+.+...|..+...|
T Consensus 248 ~~~~~~g~~~d~------~~~n~Li~~y~k~g~~~~A~~vf------------------~~m---~~~~~vt~n~li~~y 300 (697)
T PLN03081 248 CCVLKTGVVGDT------FVSCALIDMYSKCGDIEDARCVF------------------DGM---PEKTTVAWNSMLAGY 300 (697)
T ss_pred HHHHHhCCCccc------eeHHHHHHHHHHCCCHHHHHHHH------------------HhC---CCCChhHHHHHHHHH
Confidence 666654321 12 34445667777788888885544 333 345778899999999
Q ss_pred HHhcCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--cchHHHHHHHHHHHhcCCCCCCh
Q 002379 651 LRLNCQKAAMRCLRLARNHS-SSEHERLVYEGWILYDTGHREEALSRAEKSISIE--RTFEAFFLKAYILADTNLDPESS 727 (929)
Q Consensus 651 ~~~g~~~~A~~~l~~al~~~-p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~--p~~~~~~~l~~~l~~~~~~~~~~ 727 (929)
.+.|++++|+..|++..+.. ..+...+..+..++.+.|++++|.+.+..+++.. |+...+..+...|.+.|
T Consensus 301 ~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G------ 374 (697)
T PLN03081 301 ALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWG------ 374 (697)
T ss_pred HhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCC------
Confidence 99999999999999987643 2236688889999999999999999999998875 33377888888888888
Q ss_pred HHHHHHHHHHhhchhccCchh-HHHHHHHHHHHHcCCHHHHHHHHHHHHcC---CCHHHHHHHHHHHHHhCCHHHHHHHH
Q 002379 728 TYVIQLLEEALRCPSDGLRKG-QALNNLGSIYVECGKLDQAENCYINALDI---KHTRAHQGLARVYYLKNELKAAYDEM 803 (929)
Q Consensus 728 ~~a~~~~e~Al~~~~~al~~~-~a~~~lg~~~~~~g~~~eA~~~~~~al~~---~~~~a~~~la~~~~~~g~~~~A~~~~ 803 (929)
.+++|.+.+++..++. ..|+.+...|...|+.++|++.|+++.+. -+..++..+..++...|..++|.+.|
T Consensus 375 -----~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f 449 (697)
T PLN03081 375 -----RMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIF 449 (697)
T ss_pred -----CHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 8889999888887654 78999999999999999999999999876 24457888889999999999999999
Q ss_pred HHHHHHccCCH--HHH----HHHhhhCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc
Q 002379 804 TKLLEKAQYSA--SAF----EKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDL 877 (929)
Q Consensus 804 ~~al~~~p~~~--~~~----~~lg~~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~ 877 (929)
+...+..+-.+ ..| ..++..|+.++|.+.+++. ...| +...|..+...+...|+++.|...+++.+++.|++
T Consensus 450 ~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~ 527 (697)
T PLN03081 450 QSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA-PFKP-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEK 527 (697)
T ss_pred HHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCC
Confidence 99986533222 222 3344789999999998864 2334 56679999999999999999999999999999987
Q ss_pred hHH-HHHHHHHHHcCCHHHHHHHHHHHhcc
Q 002379 878 QML-HLRAAFYESIGDLTSAIRDSQAALCL 906 (929)
Q Consensus 878 ~~~-~~la~~~~~~g~~~~A~~~~~~al~l 906 (929)
... ..++.+|...|++++|.+.++...+.
T Consensus 528 ~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 528 LNNYVVLLNLYNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred CcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 644 47799999999999999999877654
No 45
>PLN03077 Protein ECB2; Provisional
Probab=99.80 E-value=1.4e-15 Score=189.94 Aligned_cols=443 Identities=9% Similarity=-0.065 Sum_probs=337.1
Q ss_pred HHHHhhHHHHhcccHHHHHHHHHHHHhcC--ccccHH-HHHHHHHHhchHHHH---HHHHHhhhccCCCchhhhHHHHHH
Q 002379 421 ALHQLGCVMFEREEYKDACYYFEAAADAG--HIYSLA-GLARAKYKVGQQYSA---YKLINSIISEHKPTGWMYQERSLY 494 (929)
Q Consensus 421 ~~~~lG~~~~~~g~y~~A~~~f~~al~~~--~~~~~a-~la~~~~~~g~a~~a---~~~~~~~~~~~~~~~~~~~~~~l~ 494 (929)
.|..+-..|.+.|++++|+..|+++.+.+ |+.... .+...+...|+...+ +..+...--..+...+......+.
T Consensus 255 s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~ 334 (857)
T PLN03077 255 SWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYL 334 (857)
T ss_pred hhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHH
Confidence 46667778899999999999999998873 443322 455555555553333 333322211212233333344444
Q ss_pred hhhh--HHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhccc--CCHhHHHHHHHHHHHhccHHHHHHH
Q 002379 495 NLGR--EKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFK--LSVDCLELRAWLFIAADDYESALRD 570 (929)
Q Consensus 495 ~~~~--~Ai~~~~kal~l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~a~~~~~~g~~~~A~~~ 570 (929)
..++ +|...|++.. ..+...|..+...|.+.|++++|+..|+++.+.. |+...+..+-..+...|++++|.+.
T Consensus 335 k~g~~~~A~~vf~~m~---~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l 411 (857)
T PLN03077 335 SLGSWGEAEKVFSRME---TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKL 411 (857)
T ss_pred hcCCHHHHHHHHhhCC---CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHH
Confidence 4444 8888988754 3456789999999999999999999999886544 4555577777788899999999999
Q ss_pred HHHHHhhcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHH
Q 002379 571 TLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLL 650 (929)
Q Consensus 571 ~~~al~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~lg~~~ 650 (929)
+..+.+...... ...+..+-..|...|++++|...+ +++. ..+...|..+...|
T Consensus 412 ~~~~~~~g~~~~-----~~~~n~Li~~y~k~g~~~~A~~vf------------------~~m~---~~d~vs~~~mi~~~ 465 (857)
T PLN03077 412 HELAERKGLISY-----VVVANALIEMYSKCKCIDKALEVF------------------HNIP---EKDVISWTSIIAGL 465 (857)
T ss_pred HHHHHHhCCCcc-----hHHHHHHHHHHHHcCCHHHHHHHH------------------HhCC---CCCeeeHHHHHHHH
Confidence 999988654322 134556777888899999995555 4433 24567899999999
Q ss_pred HHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch--HHHHHHHHHHHhcCCCCCChH
Q 002379 651 LRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF--EAFFLKAYILADTNLDPESST 728 (929)
Q Consensus 651 ~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~--~~~~~l~~~l~~~~~~~~~~~ 728 (929)
...|+.++|+..|++.....+.+...+..+-..+...|+.+.+.+.+..+++..-.. ..+..+...|.+.|
T Consensus 466 ~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G------- 538 (857)
T PLN03077 466 RLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCG------- 538 (857)
T ss_pred HHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcC-------
Confidence 999999999999999987655567777788888999999999999999988765333 45566777777877
Q ss_pred HHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC--C-CHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 002379 729 YVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI--K-HTRAHQGLARVYYLKNELKAAYDEMTK 805 (929)
Q Consensus 729 ~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~--~-~~~a~~~la~~~~~~g~~~~A~~~~~~ 805 (929)
.+++|...+........+|+.+...|...|+.++|++.|+++.+. . +..++..+-..+.+.|+.++|.+.|+.
T Consensus 539 ----~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~ 614 (857)
T PLN03077 539 ----RMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHS 614 (857)
T ss_pred ----CHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHH
Confidence 788888888877334588999999999999999999999999876 2 335777778889999999999999999
Q ss_pred HHHHccCCH--HHHHH----HhhhCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchH
Q 002379 806 LLEKAQYSA--SAFEK----RSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQM 879 (929)
Q Consensus 806 al~~~p~~~--~~~~~----lg~~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~ 879 (929)
..+..+-.+ ..|.. ++..|+.++|.+.+++. ...| ++..|..+-..+...|+.+.|....++++++.|++..
T Consensus 615 M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p-d~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~ 692 (857)
T PLN03077 615 MEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-PITP-DPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVG 692 (857)
T ss_pred HHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcc
Confidence 985543322 33333 33789999999999885 3555 4677888888888899999999999999999999987
Q ss_pred HH-HHHHHHHHcCCHHHHHHHHHHHhc
Q 002379 880 LH-LRAAFYESIGDLTSAIRDSQAALC 905 (929)
Q Consensus 880 ~~-~la~~~~~~g~~~~A~~~~~~al~ 905 (929)
.| .++.+|...|++++|.+..+...+
T Consensus 693 ~y~ll~n~ya~~g~~~~a~~vr~~M~~ 719 (857)
T PLN03077 693 YYILLCNLYADAGKWDEVARVRKTMRE 719 (857)
T ss_pred hHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 77 669999999999999999877643
No 46
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.79 E-value=1.4e-16 Score=180.63 Aligned_cols=324 Identities=16% Similarity=0.084 Sum_probs=184.9
Q ss_pred HHHHHHhccHHHHHHHHHHHHhhcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHh
Q 002379 555 AWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLI 634 (929)
Q Consensus 555 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~ 634 (929)
|...+..|++++|...+..+++.+|.+. .++..+|.+|.+.|+.+++.... -.+-.
T Consensus 146 AN~lfarg~~eeA~~i~~EvIkqdp~~~------~ay~tL~~IyEqrGd~eK~l~~~------------------llAAH 201 (895)
T KOG2076|consen 146 ANNLFARGDLEEAEEILMEVIKQDPRNP------IAYYTLGEIYEQRGDIEKALNFW------------------LLAAH 201 (895)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhCccch------hhHHHHHHHHHHcccHHHHHHHH------------------HHHHh
Confidence 3334444555555555555555555555 45555555555555555552222 34444
Q ss_pred cCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch--H----
Q 002379 635 NDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF--E---- 708 (929)
Q Consensus 635 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~--~---- 708 (929)
++|++...|..++.....+|++.+|.-+|.+|++.+|.+.......+.+|.++|+...|...|.+++...|.. +
T Consensus 202 L~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d 281 (895)
T KOG2076|consen 202 LNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIED 281 (895)
T ss_pred cCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHH
Confidence 5555555666666666666666666666666666666665555556666666666666666666666655522 1
Q ss_pred HHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC-----------
Q 002379 709 AFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI----------- 777 (929)
Q Consensus 709 ~~~~l~~~l~~~~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~----------- 777 (929)
.....+..+...+ ..+.++..++.++. -....-..+.++.++.+++...+++.|..........
T Consensus 282 ~i~~~~~~~~~~~----~~e~a~~~le~~~s-~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~ 356 (895)
T KOG2076|consen 282 LIRRVAHYFITHN----ERERAAKALEGALS-KEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDT 356 (895)
T ss_pred HHHHHHHHHHHhh----HHHHHHHHHHHHHh-hccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhh
Confidence 1111111111111 11222222222222 0000111244566677777777777777666555441
Q ss_pred --------------C-----CHHH-HHHHHHHHHHhCCHHHHHHHHHHHHHHccC-CHHHHHHHh----hhCCHHHHHHH
Q 002379 778 --------------K-----HTRA-HQGLARVYYLKNELKAAYDEMTKLLEKAQY-SASAFEKRS----EYSDREMAKND 832 (929)
Q Consensus 778 --------------~-----~~~a-~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg----~~g~~~~A~~~ 832 (929)
+ ...+ ...++.+..+.++..+++..+..--...|. ..+.+..++ ..|++.+|+..
T Consensus 357 ~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~ 436 (895)
T KOG2076|consen 357 DERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRL 436 (895)
T ss_pred hhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHH
Confidence 0 0012 344444444445555555444322222232 344555555 45778888888
Q ss_pred HHHHHhcCC-CCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHH-HHHHHHHHcCCHHHHHHHHHHHhccC
Q 002379 833 LNMATQLDP-LRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLH-LRAAFYESIGDLTSAIRDSQAALCLD 907 (929)
Q Consensus 833 ~~~al~l~p-~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~-~la~~~~~~g~~~~A~~~~~~al~l~ 907 (929)
|..++...+ .+...|+.+|.+|+..|.+++|++.|++++...|++.... .++.++.++|+.++|.+.+++...-|
T Consensus 437 l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D 513 (895)
T KOG2076|consen 437 LSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPD 513 (895)
T ss_pred HHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCC
Confidence 888777666 4567888899999999999999999999999999886655 77888999999999988888877444
No 47
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.79 E-value=2.3e-16 Score=179.17 Aligned_cols=294 Identities=16% Similarity=0.035 Sum_probs=214.9
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHhcccCCHhH-HHHHHHHHHHhccHHHHHHHHHHHHhhcCCchhhhccccHHHHHHHH
Q 002379 519 KYRAVAKMEEGQIRAAISEIDRIIVFKLSVDC-LELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLL 597 (929)
Q Consensus 519 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~ll~~~ 597 (929)
...|......|+++.|.+.+.++.+..|+|.. +...|.+....|+++.|...+.++.+..|++.
T Consensus 88 ~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~--------------- 152 (409)
T TIGR00540 88 TEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDN--------------- 152 (409)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCc---------------
Confidence 45555555666666666666665555443332 34445555555666666666655555444443
Q ss_pred HHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHH
Q 002379 598 NHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERL 677 (929)
Q Consensus 598 ~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~ 677 (929)
..+....+.++...|++++|...+++..+..|+++.++
T Consensus 153 ------------------------------------------l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l 190 (409)
T TIGR00540 153 ------------------------------------------ILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVL 190 (409)
T ss_pred ------------------------------------------hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 12334457888889999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhccch-HHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHH
Q 002379 678 VYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGS 756 (929)
Q Consensus 678 ~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~~~~~l~~~l~~~~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~ 756 (929)
..++.++...|++++|.+.+++..+..... ..+..+ ......
T Consensus 191 ~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l-------------------------------------~~~a~~ 233 (409)
T TIGR00540 191 KLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADL-------------------------------------EQKAEI 233 (409)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHH-------------------------------------HHHHHH
Confidence 999999999999999999999988764322 100000 001111
Q ss_pred HHHHcCCHHHHHHHHHHHHcC------CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHH----HHHHHh--hhC
Q 002379 757 IYVECGKLDQAENCYINALDI------KHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSAS----AFEKRS--EYS 824 (929)
Q Consensus 757 ~~~~~g~~~eA~~~~~~al~~------~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~lg--~~g 824 (929)
-+...+..+++.+.+.++.+. +.+..+..++..+...|++++|.+.++++++..|++.. .+...+ ..+
T Consensus 234 ~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~ 313 (409)
T TIGR00540 234 GLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPE 313 (409)
T ss_pred HHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCC
Confidence 112223333344455554443 36678899999999999999999999999999999875 333333 347
Q ss_pred CHHHHHHHHHHHHhcCCCCc--HHHHHHHHHHHhcCCHHHHHHHHH--HHHhcCCCchHHHHHHHHHHHcCCHHHHHHHH
Q 002379 825 DREMAKNDLNMATQLDPLRT--YPYRYRAAVLMDDQKEVEAVEELS--KAIAFKPDLQMLHLRAAFYESIGDLTSAIRDS 900 (929)
Q Consensus 825 ~~~~A~~~~~~al~l~p~~~--~~~~~la~~~~~~g~~~eA~~~l~--kal~~~p~~~~~~~la~~~~~~g~~~~A~~~~ 900 (929)
+.+.++..++++++..|+++ .....+|+++.+.|++++|.++|+ ++++..|++..+..+|.++.+.|+.++|.++|
T Consensus 314 ~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~ 393 (409)
T TIGR00540 314 DNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMR 393 (409)
T ss_pred ChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 78999999999999999999 889999999999999999999999 68889999988778899999999999999999
Q ss_pred HHHhcc
Q 002379 901 QAALCL 906 (929)
Q Consensus 901 ~~al~l 906 (929)
++++..
T Consensus 394 ~~~l~~ 399 (409)
T TIGR00540 394 QDSLGL 399 (409)
T ss_pred HHHHHH
Confidence 998764
No 48
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.79 E-value=1.3e-16 Score=181.04 Aligned_cols=454 Identities=13% Similarity=0.053 Sum_probs=326.5
Q ss_pred HhhHHHHhcccHHHHHHHHHHHHhcCc-cccHHHHHHHHHHhch---HHHHHHHHHhhhccCCCchhhhHHHHHHhhhhH
Q 002379 424 QLGCVMFEREEYKDACYYFEAAADAGH-IYSLAGLARAKYKVGQ---QYSAYKLINSIISEHKPTGWMYQERSLYNLGRE 499 (929)
Q Consensus 424 ~lG~~~~~~g~y~~A~~~f~~al~~~~-~~~~a~la~~~~~~g~---a~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 499 (929)
..|.+......|.+|.........+.. +.+...+..++.+.+. -...+.... ...-|.. ..........
T Consensus 404 akgl~~ie~~~y~Daa~tl~lv~~~s~nd~slselswc~~~~~ek~mdva~~~~~e------~~~~w~a-~~~~rK~~~~ 476 (1238)
T KOG1127|consen 404 AKGLAPIEANVYTDAAITLDLVSSLSFNDDSLSELSWCLPRALEKMMDVALLLECE------NSEFWVA-LGCMRKNSAL 476 (1238)
T ss_pred hcchhHHHHhhchHHHHHHHHHHHhhcCchhhhHhhHHHHHhHHhhhhHHHHHHHH------HHHHHHH-HHHhhhhHHH
Confidence 356667777888888887777666531 1111123333332111 111111000 0011111 1111112238
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccC-CHhHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Q 002379 500 KIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLALLALE 578 (929)
Q Consensus 500 Ai~~~~kal~l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~ 578 (929)
|...|-+++++||+.+.+|..+|.+|..-.+...|..+|.+|.++++ +.+.....+..|....+.++|....-.+-+..
T Consensus 477 al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka 556 (1238)
T KOG1127|consen 477 ALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKA 556 (1238)
T ss_pred HHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhc
Confidence 89999999999999999999999999999999999999999999988 66777788999999999999999866666655
Q ss_pred CCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHH
Q 002379 579 SNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKA 658 (929)
Q Consensus 579 p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~ 658 (929)
|-...- ..+..+|..|...++...|++++ +.+++.+|++...|..+|.+|...|.+..
T Consensus 557 ~a~~~k----~nW~~rG~yyLea~n~h~aV~~f------------------QsALR~dPkD~n~W~gLGeAY~~sGry~~ 614 (1238)
T KOG1127|consen 557 PAFACK----ENWVQRGPYYLEAHNLHGAVCEF------------------QSALRTDPKDYNLWLGLGEAYPESGRYSH 614 (1238)
T ss_pred hHHHHH----hhhhhccccccCccchhhHHHHH------------------HHHhcCCchhHHHHHHHHHHHHhcCceeh
Confidence 544311 33444788888888888888877 99999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch-HHHHHHHHHHHhcCCC---CCChHHHHHHH
Q 002379 659 AMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLD---PESSTYVIQLL 734 (929)
Q Consensus 659 A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~~~~~l~~~l~~~~~~---~~~~~~a~~~~ 734 (929)
|++.|.+|..++|.+....+..+.+....|+|.+|+..+...+...... .....++.++.+...+ .+-...+...+
T Consensus 615 AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~ 694 (1238)
T KOG1127|consen 615 ALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFF 694 (1238)
T ss_pred HHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 9999999999999999999999999999999999999999988765444 3334444433322100 00111122233
Q ss_pred HHHhhchhccCch-----hHHHHHHHHH-------------------HH----HcCCH------HHHHHHHHHHHcC-CC
Q 002379 735 EEALRCPSDGLRK-----GQALNNLGSI-------------------YV----ECGKL------DQAENCYINALDI-KH 779 (929)
Q Consensus 735 e~Al~~~~~al~~-----~~a~~~lg~~-------------------~~----~~g~~------~eA~~~~~~al~~-~~ 779 (929)
+++++.+.-++.. ...|..+|.+ +. ..+.. --|.+++-..++. .+
T Consensus 695 eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~ 774 (1238)
T KOG1127|consen 695 EKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIH 774 (1238)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhc
Confidence 4444333222111 0111111111 11 11111 2356666666666 66
Q ss_pred HHHHHHHHHHHHH--------hCCHHHHHHHHHHHHHHccCCHHHHHHHh---hhCCHHHHHHHHHHHHhcCCCCcHHHH
Q 002379 780 TRAHQGLARVYYL--------KNELKAAYDEMTKLLEKAQYSASAFEKRS---EYSDREMAKNDLNMATQLDPLRTYPYR 848 (929)
Q Consensus 780 ~~a~~~la~~~~~--------~g~~~~A~~~~~~al~~~p~~~~~~~~lg---~~g~~~~A~~~~~~al~l~p~~~~~~~ 848 (929)
+..|+++|..|.. +.+...|+..+.++++...++...|..+| ..|++.-|..+|-+.+...|...-.|.
T Consensus 775 ~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVlsg~gnva~aQHCfIks~~sep~~~~~W~ 854 (1238)
T KOG1127|consen 775 MYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVLSGIGNVACAQHCFIKSRFSEPTCHCQWL 854 (1238)
T ss_pred cchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHhhccchhhhhhhhhhhhhhccccchhhee
Confidence 7899999998876 23345899999999999999999999999 458899999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHH-HHHHHHHHcCCHHHHHHHHHHHhcc
Q 002379 849 YRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLH-LRAAFYESIGDLTSAIRDSQAALCL 906 (929)
Q Consensus 849 ~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~-~la~~~~~~g~~~~A~~~~~~al~l 906 (929)
++|.++.+..+++.|...|.++..++|.+-..+ -.+.+....|+.-++...|...-++
T Consensus 855 NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el 913 (1238)
T KOG1127|consen 855 NLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDEL 913 (1238)
T ss_pred ccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHh
Confidence 999999999999999999999999999886555 5588999999999999998884333
No 49
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.78 E-value=1.3e-15 Score=185.49 Aligned_cols=382 Identities=13% Similarity=0.034 Sum_probs=297.1
Q ss_pred HHHHHHHHHHh--cCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccCCHhHHHHHHHHHHHhccHHHHHHHHHHHHh
Q 002379 499 EKIVDLNYASE--LDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLA 576 (929)
Q Consensus 499 ~Ai~~~~kal~--l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~ 576 (929)
.+.+.+....+ ..| +...+..+...|.+.|++++|...|++.. .++...|..+...|.+.|++++|+..|++.++
T Consensus 141 ~a~~l~~~m~~~g~~~-~~~~~n~Li~~y~k~g~~~~A~~lf~~m~--~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~ 217 (697)
T PLN03081 141 CVKAVYWHVESSGFEP-DQYMMNRVLLMHVKCGMLIDARRLFDEMP--ERNLASWGTIIGGLVDAGNYREAFALFREMWE 217 (697)
T ss_pred HHHHHHHHHHHhCCCc-chHHHHHHHHHHhcCCCHHHHHHHHhcCC--CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 66777776665 345 47788888999999999999999999986 46677788899999999999999999999987
Q ss_pred hcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcC-CCChHHHHHHHHHHHHhcC
Q 002379 577 LESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLIND-PGKSFLRFRQSLLLLRLNC 655 (929)
Q Consensus 577 ~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~~-p~~~~~~~~lg~~~~~~g~ 655 (929)
..+.... ..+..+-......+....+..+. ..+++.. ..+..++..+...|.+.|+
T Consensus 218 ~g~~p~~-----~t~~~ll~a~~~~~~~~~~~~l~------------------~~~~~~g~~~d~~~~n~Li~~y~k~g~ 274 (697)
T PLN03081 218 DGSDAEP-----RTFVVMLRASAGLGSARAGQQLH------------------CCVLKTGVVGDTFVSCALIDMYSKCGD 274 (697)
T ss_pred hCCCCCh-----hhHHHHHHHHhcCCcHHHHHHHH------------------HHHHHhCCCccceeHHHHHHHHHHCCC
Confidence 5432220 12222333334445555553333 3333332 3356778889999999999
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--ccchHHHHHHHHHHHhcCCCCCChHHHHHH
Q 002379 656 QKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISI--ERTFEAFFLKAYILADTNLDPESSTYVIQL 733 (929)
Q Consensus 656 ~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~p~~~~~~~l~~~l~~~~~~~~~~~~a~~~ 733 (929)
+++|.+.|++. .+.+...|..+...|.+.|++++|+..|++..+. .|+...+..+...+...+ .
T Consensus 275 ~~~A~~vf~~m---~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g-----------~ 340 (697)
T PLN03081 275 IEDARCVFDGM---PEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLA-----------L 340 (697)
T ss_pred HHHHHHHHHhC---CCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcc-----------c
Confidence 99999999876 3456789999999999999999999999998764 466677888888888887 6
Q ss_pred HHHHhhchhccCch-----hHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 002379 734 LEEALRCPSDGLRK-----GQALNNLGSIYVECGKLDQAENCYINALDIKHTRAHQGLARVYYLKNELKAAYDEMTKLLE 808 (929)
Q Consensus 734 ~e~Al~~~~~al~~-----~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~ 808 (929)
+++|.+.+....+. ..+++.+...|.+.|++++|...|++..+ .+..+|..+...|.+.|+.++|++.|++..+
T Consensus 341 ~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~-~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~ 419 (697)
T PLN03081 341 LEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR-KNLISWNALIAGYGNHGRGTKAVEMFERMIA 419 (697)
T ss_pred hHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC-CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77777766665432 36789999999999999999999998765 3556899999999999999999999999886
Q ss_pred Hc--cCCHHHHH---HHhhhCCHHHHHHHHHHHHhcCC--CCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHH
Q 002379 809 KA--QYSASAFE---KRSEYSDREMAKNDLNMATQLDP--LRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLH 881 (929)
Q Consensus 809 ~~--p~~~~~~~---~lg~~g~~~~A~~~~~~al~l~p--~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~ 881 (929)
.. |+...... ..+..|..++|...|+...+..+ -+...|..+..+|.+.|++++|.+.+++. ...|+...|.
T Consensus 420 ~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~-~~~p~~~~~~ 498 (697)
T PLN03081 420 EGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA-PFKPTVNMWA 498 (697)
T ss_pred hCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC-CCCCCHHHHH
Confidence 53 44333221 22278999999999999876433 24567889999999999999999999874 4567777777
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHh
Q 002379 882 LRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNRARD 922 (929)
Q Consensus 882 ~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~l~~ 922 (929)
.+...+...|+.+.|...+++.++++|++...+..+..+..
T Consensus 499 ~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~ 539 (697)
T PLN03081 499 ALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYN 539 (697)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHH
Confidence 77778889999999999999999999998776666655433
No 50
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.76 E-value=8.2e-16 Score=160.35 Aligned_cols=398 Identities=16% Similarity=0.125 Sum_probs=267.0
Q ss_pred HHHHHHHhhHHHHhcccHHHHHHHHHHHHhcCccccHH-HHHHHHHHhch---HHHHHHHHHhhhccC----------CC
Q 002379 418 RMLALHQLGCVMFEREEYKDACYYFEAAADAGHIYSLA-GLARAKYKVGQ---QYSAYKLINSIISEH----------KP 483 (929)
Q Consensus 418 ~a~~~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~~~a-~la~~~~~~g~---a~~a~~~~~~~~~~~----------~~ 483 (929)
+...+.++|..+.+.|.|++|+..|+..++..|....+ .+..+++.-|+ ..+++.+++.+--.. .|
T Consensus 275 rikil~nigvtfiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp 354 (840)
T KOG2003|consen 275 RIKILNNIGVTFIQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDP 354 (840)
T ss_pred HHHHHhhcCeeEEecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCc
Confidence 45677899999999999999999999999999987665 44445554444 555666655432111 11
Q ss_pred c-hhhhHHH---HHHhhhh----HHHHHHHHHHhc-----CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccCCHhH
Q 002379 484 T-GWMYQER---SLYNLGR----EKIVDLNYASEL-----DPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDC 550 (929)
Q Consensus 484 ~-~~~~~~~---~l~~~~~----~Ai~~~~kal~l-----~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~ 550 (929)
. ..+.... .+-...+ .|.+....+.++ .|+.+..+- +|+... +|-...+- ..+.
T Consensus 355 ~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~d---wcle~l----k~s~~~~l------a~dl 421 (840)
T KOG2003|consen 355 DDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCD---WCLESL----KASQHAEL------AIDL 421 (840)
T ss_pred chHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccH---HHHHHH----HHhhhhhh------hhhh
Confidence 1 1111110 0000001 111111111111 111111110 011000 00000111 1122
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhcCCchhhhccccHHHHHHHHHHhh--cccchHHHHHHhhhccccccccccHHH
Q 002379 551 LELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHV--RSWSPADCWIKLYDRWSSVDDIGSLAV 628 (929)
Q Consensus 551 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~ll~~~~~~~--~~~~~A~~~l~l~~~~~~~~~~~~l~~ 628 (929)
-...+.-+++.|+++.|++.+.-.-+.+.....+ .+. .+..++..+ .++..|..+.
T Consensus 422 ei~ka~~~lk~~d~~~aieilkv~~~kdnk~~sa----aa~-nl~~l~flqggk~~~~aqqya----------------- 479 (840)
T KOG2003|consen 422 EINKAGELLKNGDIEGAIEILKVFEKKDNKTASA----AAN-NLCALRFLQGGKDFADAQQYA----------------- 479 (840)
T ss_pred hhhHHHHHHhccCHHHHHHHHHHHHhccchhhHH----Hhh-hhHHHHHHhcccchhHHHHHH-----------------
Confidence 3345666788888888888776544433322211 111 222222222 2333343333
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchH
Q 002379 629 INQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFE 708 (929)
Q Consensus 629 ~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~ 708 (929)
..++..+.-++.+..+.|.+.+..|++++|...|+.++..+....++++++|..+..+|+.++|+.+|-+.-.+-.++
T Consensus 480 -d~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn- 557 (840)
T KOG2003|consen 480 -DIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNN- 557 (840)
T ss_pred -HHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhh-
Confidence 677777778888888888888888888888888888888888888888888888888888888888886654432222
Q ss_pred HHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC--CCHHHHHHH
Q 002379 709 AFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI--KHTRAHQGL 786 (929)
Q Consensus 709 ~~~~l~~~l~~~~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~--~~~~a~~~l 786 (929)
.++++.++.+|..+.+..+|+++|.++..+ ++|..+..|
T Consensus 558 ---------------------------------------~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl 598 (840)
T KOG2003|consen 558 ---------------------------------------AEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKL 598 (840)
T ss_pred ---------------------------------------HHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHH
Confidence 567899999999999999999999999998 788899999
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHh----hhCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHH
Q 002379 787 ARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS----EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVE 862 (929)
Q Consensus 787 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg----~~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~e 862 (929)
|.+|-+.|+..+|.+++-......|.+.+....++ ...-.++|+.+|+++.-+.|+...-....+.++.+.|+|.+
T Consensus 599 ~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqk 678 (840)
T KOG2003|consen 599 ADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQK 678 (840)
T ss_pred HHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHH
Confidence 99999999999999999999999999998877777 33456999999999999999998888899999999999999
Q ss_pred HHHHHHHHHhcCCCch-HHHHHHHHHHHcC
Q 002379 863 AVEELSKAIAFKPDLQ-MLHLRAAFYESIG 891 (929)
Q Consensus 863 A~~~l~kal~~~p~~~-~~~~la~~~~~~g 891 (929)
|.+.|+......|.+- ++..+-.+.-.+|
T Consensus 679 a~d~yk~~hrkfpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 679 AFDLYKDIHRKFPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred HHHHHHHHHHhCccchHHHHHHHHHhcccc
Confidence 9999999999889874 4545555544444
No 51
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=2.2e-16 Score=170.47 Aligned_cols=269 Identities=14% Similarity=0.083 Sum_probs=207.2
Q ss_pred CChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccC-CHhHHHHHHHHHHHhccHHHHHHHHHHHHhhcCCchhhhccccHH
Q 002379 513 TLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGD 591 (929)
Q Consensus 513 ~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~ 591 (929)
++......++..++..++|.+..+.++..++..| ++.++.....++..+|+..+-...-.+..+..|+.+ -.+
T Consensus 242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a------~sW 315 (611)
T KOG1173|consen 242 ENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKA------LSW 315 (611)
T ss_pred hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCC------cch
Confidence 5667788888999999999999999999999888 777766655588888888888888888888999988 666
Q ss_pred HHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Q 002379 592 HLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSS 671 (929)
Q Consensus 592 ~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p 671 (929)
..+|.-|...+.+.+|..++ .++..++|..+.+|...|..+...|..++|+.+|..|-++-|
T Consensus 316 ~aVg~YYl~i~k~seARry~------------------SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~ 377 (611)
T KOG1173|consen 316 FAVGCYYLMIGKYSEARRYF------------------SKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMP 377 (611)
T ss_pred hhHHHHHHHhcCcHHHHHHH------------------HHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhcc
Confidence 77889999999999997777 899999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHH
Q 002379 672 SEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQAL 751 (929)
Q Consensus 672 ~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~l~~~l~~~~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~ 751 (929)
........+|.-|..+++++-|..+|.+|+.+.|++ +-.+
T Consensus 378 G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~D----------------------------------------plv~ 417 (611)
T KOG1173|consen 378 GCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSD----------------------------------------PLVL 417 (611)
T ss_pred CCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCc----------------------------------------chhh
Confidence 988888999999999999999999999999999987 3345
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHcC----CC-----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHh-
Q 002379 752 NNLGSIYVECGKLDQAENCYINALDI----KH-----TRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS- 821 (929)
Q Consensus 752 ~~lg~~~~~~g~~~eA~~~~~~al~~----~~-----~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg- 821 (929)
+.+|.+.+..+.|.+|..+|+.++.. .+ ...+.++|.++.+++.+++|+..+++++...|.++.++...|
T Consensus 418 ~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~ 497 (611)
T KOG1173|consen 418 HELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGY 497 (611)
T ss_pred hhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHH
Confidence 66666777777777777777776633 11 124667777777777777776666666666665555554444
Q ss_pred ---hhCCHHHHHHHHHHHHhcCCCCcH
Q 002379 822 ---EYSDREMAKNDLNMATQLDPLRTY 845 (929)
Q Consensus 822 ---~~g~~~~A~~~~~~al~l~p~~~~ 845 (929)
.+|+++.|+..|.+++.++|++..
T Consensus 498 iy~llgnld~Aid~fhKaL~l~p~n~~ 524 (611)
T KOG1173|consen 498 IYHLLGNLDKAIDHFHKALALKPDNIF 524 (611)
T ss_pred HHHHhcChHHHHHHHHHHHhcCCccHH
Confidence 334444444444444444444433
No 52
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.76 E-value=3.9e-14 Score=174.45 Aligned_cols=349 Identities=11% Similarity=0.008 Sum_probs=191.1
Q ss_pred HHHhhHHHHhcccHHHHHHHHHHHHhcCcc--ccHH--HHHHHHHHhchHHHHHHHHHhhhccCCCchhhhHHHHHHhhh
Q 002379 422 LHQLGCVMFEREEYKDACYYFEAAADAGHI--YSLA--GLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNLG 497 (929)
Q Consensus 422 ~~~lG~~~~~~g~y~~A~~~f~~al~~~~~--~~~a--~la~~~~~~g~a~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 497 (929)
+..+=..+.+.|++++|++.|+.....+.. .... .+...+...|....++.... .++......|...-..+...+
T Consensus 373 ~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~-~M~~pd~~Tyn~LL~a~~k~g 451 (1060)
T PLN03218 373 YIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAK-LIRNPTLSTFNMLMSVCASSQ 451 (1060)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHH-HcCCCCHHHHHHHHHHHHhCc
Confidence 334445566889999999999998876532 2111 23334444455444443222 222212222222222222222
Q ss_pred h--HHHHHHHHHHhcCC-CChHHHHHHHHHHHHhCCHHHHHHHHHHHhccc--CCHhHHHHHHHHHHHhccHHHHHHHHH
Q 002379 498 R--EKIVDLNYASELDP-TLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFK--LSVDCLELRAWLFIAADDYESALRDTL 572 (929)
Q Consensus 498 ~--~Ai~~~~kal~l~P-~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~a~~~~~~g~~~~A~~~~~ 572 (929)
+ +|...|++..+... .+...|..+-..|.+.|++++|...|+++.+.. |+...|..+...|.+.|++++|+..|+
T Consensus 452 ~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~ 531 (1060)
T PLN03218 452 DIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYG 531 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 2 66666666665543 245566666666777777777777777665432 345556666666677777777777776
Q ss_pred HHHhh--cCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhc----CCCChHHHHHH
Q 002379 573 ALLAL--ESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLIN----DPGKSFLRFRQ 646 (929)
Q Consensus 573 ~al~~--~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~----~p~~~~~~~~l 646 (929)
...+. .|+. ..+..+-..+...|++++|...+ .++... .| +...|..+
T Consensus 532 ~M~~~Gv~PD~-------vTYnsLI~a~~k~G~~deA~~lf------------------~eM~~~~~gi~P-D~vTynaL 585 (1060)
T PLN03218 532 IMRSKNVKPDR-------VVFNALISACGQSGAVDRAFDVL------------------AEMKAETHPIDP-DHITVGAL 585 (1060)
T ss_pred HHHHcCCCCCH-------HHHHHHHHHHHHCCCHHHHHHHH------------------HHHHHhcCCCCC-cHHHHHHH
Confidence 66543 2332 23344555555666666664444 444431 23 34456666
Q ss_pred HHHHHHhcCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--ccchHHHHHHHHHHHhcCCC
Q 002379 647 SLLLLRLNCQKAAMRCLRLARNHS-SSEHERLVYEGWILYDTGHREEALSRAEKSISI--ERTFEAFFLKAYILADTNLD 723 (929)
Q Consensus 647 g~~~~~~g~~~~A~~~l~~al~~~-p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~p~~~~~~~l~~~l~~~~~~ 723 (929)
...|.+.|++++|.+.|+.+.+.+ +.+...|..+...|.+.|++++|...|++..+. .|+...|..+...+...+
T Consensus 586 I~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G-- 663 (1060)
T PLN03218 586 MKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAG-- 663 (1060)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC--
Confidence 666677777777777777666654 334566666666777777777777777666654 344344444444554444
Q ss_pred CCChHHHHHHHHHHhhchhccCc----h-hHHHHHHHHHHHHcCCHHHHHHHHHHHHcC---CCHHHHHHHHHHHHHhCC
Q 002379 724 PESSTYVIQLLEEALRCPSDGLR----K-GQALNNLGSIYVECGKLDQAENCYINALDI---KHTRAHQGLARVYYLKNE 795 (929)
Q Consensus 724 ~~~~~~a~~~~e~Al~~~~~al~----~-~~a~~~lg~~~~~~g~~~eA~~~~~~al~~---~~~~a~~~la~~~~~~g~ 795 (929)
.+++|.+.+....+ + ...|..+...|.+.|++++|.+.|+++.+. .+...|..+...|.+.|+
T Consensus 664 ---------~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~ 734 (1060)
T PLN03218 664 ---------DLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQ 734 (1060)
T ss_pred ---------CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCC
Confidence 44444444443322 1 245555555555555555555555555433 223455555555555555
Q ss_pred HHHHHHHHHHHHH
Q 002379 796 LKAAYDEMTKLLE 808 (929)
Q Consensus 796 ~~~A~~~~~~al~ 808 (929)
+++|.+.++++..
T Consensus 735 ~eeAlelf~eM~~ 747 (1060)
T PLN03218 735 LPKALEVLSEMKR 747 (1060)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555443
No 53
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.76 E-value=6.1e-15 Score=167.70 Aligned_cols=405 Identities=16% Similarity=0.072 Sum_probs=306.3
Q ss_pred hhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccC---CHhHHHHHHHHHHHhccHHHHHHHHHH
Q 002379 497 GREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL---SVDCLELRAWLFIAADDYESALRDTLA 573 (929)
Q Consensus 497 ~~~Ai~~~~kal~l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~---~~~~~~~~a~~~~~~g~~~~A~~~~~~ 573 (929)
...|.++|++|.++||.++.++...+..|.+..+++.|....-++-+..+ ....+..+|..|...++...|+..|+.
T Consensus 508 m~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQs 587 (1238)
T KOG1127|consen 508 MKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQS 587 (1238)
T ss_pred HHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHH
Confidence 33899999999999999999999999999999999999998766665554 233466699999999999999999999
Q ss_pred HHhhcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHHHHh
Q 002379 574 LLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRL 653 (929)
Q Consensus 574 al~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~lg~~~~~~ 653 (929)
++..+|++. +++.-+|.+|...|.+..| +.++.++..++|.+.-..+..+.+....
T Consensus 588 ALR~dPkD~------n~W~gLGeAY~~sGry~~A------------------lKvF~kAs~LrP~s~y~~fk~A~~ecd~ 643 (1238)
T KOG1127|consen 588 ALRTDPKDY------NLWLGLGEAYPESGRYSHA------------------LKVFTKASLLRPLSKYGRFKEAVMECDN 643 (1238)
T ss_pred HhcCCchhH------HHHHHHHHHHHhcCceehH------------------HHhhhhhHhcCcHhHHHHHHHHHHHHHh
Confidence 999999999 8888899999999999999 4555999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHhcCCch-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--------cch-HHHHHHHHHH
Q 002379 654 NCQKAAMRCLRLARNHSSSE-------HERLVYEGWILYDTGHREEALSRAEKSISIE--------RTF-EAFFLKAYIL 717 (929)
Q Consensus 654 g~~~~A~~~l~~al~~~p~~-------~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~--------p~~-~~~~~l~~~l 717 (929)
|+|.+|+..+...+...... .+.+...+..+...|-+..|...++++++.. -++ -.|..++.+.
T Consensus 644 GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac 723 (1238)
T KOG1127|consen 644 GKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDAC 723 (1238)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHH
Confidence 99999999999887665443 4555556666666777777777777776542 111 2233222221
Q ss_pred H-hcCCCCCChHH-HHH----------------HHHHHhhchhccCc---hhHHHHHHHHHHHH--------cCCHHHHH
Q 002379 718 A-DTNLDPESSTY-VIQ----------------LLEEALRCPSDGLR---KGQALNNLGSIYVE--------CGKLDQAE 768 (929)
Q Consensus 718 ~-~~~~~~~~~~~-a~~----------------~~e~Al~~~~~al~---~~~a~~~lg~~~~~--------~g~~~eA~ 768 (929)
. -....+.-... ... .+--+.+++-..+. ....|+++|.-|+. +.+...|+
T Consensus 724 ~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai 803 (1238)
T KOG1127|consen 724 YIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAI 803 (1238)
T ss_pred HHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHH
Confidence 1 00011111000 000 11112222222221 14678999988876 23345799
Q ss_pred HHHHHHHcC--CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHh----hhCCHHHHHHHHHHHHhcCCC
Q 002379 769 NCYINALDI--KHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS----EYSDREMAKNDLNMATQLDPL 842 (929)
Q Consensus 769 ~~~~~al~~--~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg----~~g~~~~A~~~~~~al~l~p~ 842 (929)
.++.+++++ ++...|..||.+ ...|++.-|...|.+.+...|.+...|.++| +..+++.|...|.++..++|.
T Consensus 804 ~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~ 882 (1238)
T KOG1127|consen 804 RCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPL 882 (1238)
T ss_pred HHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhhcCch
Confidence 999999999 666789999988 6679999999999999999999999999999 678999999999999999999
Q ss_pred CcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc------hHHHHHHHHHHHcCCHHHHHHH----------HHHHhcc
Q 002379 843 RTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDL------QMLHLRAAFYESIGDLTSAIRD----------SQAALCL 906 (929)
Q Consensus 843 ~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~------~~~~~la~~~~~~g~~~~A~~~----------~~~al~l 906 (929)
+...|...+.+....|+.-++...+...-++.... ..++.--.....+|++++-+.. .++.+.-
T Consensus 883 nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~ 962 (1238)
T KOG1127|consen 883 NLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLG 962 (1238)
T ss_pred hhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhc
Confidence 99999999999999999999999998855544322 2222335555566666655544 4556667
Q ss_pred CCCCHHHHHHHHHHHhhhhh
Q 002379 907 DPNHMETLDLYNRARDQASH 926 (929)
Q Consensus 907 ~P~~~~a~~~~~~l~~~~~~ 926 (929)
.|+...++...+...++...
T Consensus 963 ~p~~~fAy~~~gstlEhL~e 982 (1238)
T KOG1127|consen 963 HPQLCFAYAANGSTLEHLEE 982 (1238)
T ss_pred CcchhHHHHHHHhHHHHHHH
Confidence 89998888887777665543
No 54
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.75 E-value=3.5e-15 Score=168.55 Aligned_cols=299 Identities=15% Similarity=0.023 Sum_probs=217.5
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhcccCCHhHHHHH-HHHHHHhccHHHHHHHHHHHHhhcCCchhhhccccHHHHHHH
Q 002379 518 YKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELR-AWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKL 596 (929)
Q Consensus 518 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~ll~~ 596 (929)
.+..|......|+++.|.+...+..+..+.|..++.. +......|+++.|...+.++.+.+|++.
T Consensus 87 ~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~-------------- 152 (398)
T PRK10747 87 QTEQALLKLAEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQ-------------- 152 (398)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcch--------------
Confidence 4555666666666666666666554433334443333 3333666666666666666665555543
Q ss_pred HHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHH
Q 002379 597 LNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHER 676 (929)
Q Consensus 597 ~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~ 676 (929)
.......+.++...|++++|...++++.+.+|+++.+
T Consensus 153 -------------------------------------------~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~a 189 (398)
T PRK10747 153 -------------------------------------------LPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEV 189 (398)
T ss_pred -------------------------------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHH
Confidence 1122344778888999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhccch-HHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHH
Q 002379 677 LVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLG 755 (929)
Q Consensus 677 ~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~~~~~l~~~l~~~~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg 755 (929)
+..++.+|...|++++|+..+.+..+..+.. +... .++ ..++..+.
T Consensus 190 l~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~---------------------~l~------------~~a~~~l~ 236 (398)
T PRK10747 190 LRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRA---------------------MLE------------QQAWIGLM 236 (398)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHH---------------------HHH------------HHHHHHHH
Confidence 9999999999999999998888888765433 1000 000 01111111
Q ss_pred HHHHHcCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHh--hhCCHHHHHH
Q 002379 756 SIYVECGKLDQAENCYINALDI--KHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS--EYSDREMAKN 831 (929)
Q Consensus 756 ~~~~~~g~~~eA~~~~~~al~~--~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg--~~g~~~~A~~ 831 (929)
.......+-+...+.++...+. +++.+...++..+...|+.++|...++++++. +.++......+ ..++.++++.
T Consensus 237 ~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l~~~~~~~al~ 315 (398)
T PRK10747 237 DQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDERLVLLIPRLKTNNPEQLEK 315 (398)
T ss_pred HHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHHHHHHhhccCCChHHHHH
Confidence 1112222333344444433222 57788999999999999999999999999994 44555444444 4589999999
Q ss_pred HHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 002379 832 DLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLHLRAAFYESIGDLTSAIRDSQAALCLD 907 (929)
Q Consensus 832 ~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 907 (929)
..++.++..|+++..+..+|.++...+++++|.+.|+++++..|++..+..++.++.++|+.++|.++|++++.+.
T Consensus 316 ~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 316 VLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999999999999998899999999999999999999998764
No 55
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.75 E-value=6.4e-18 Score=182.33 Aligned_cols=252 Identities=21% Similarity=0.213 Sum_probs=113.2
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHh-c-CCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch-HHHHHHHHHHHh
Q 002379 643 RFRQSLLLLRLNCQKAAMRCLRLARN-H-SSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILAD 719 (929)
Q Consensus 643 ~~~lg~~~~~~g~~~~A~~~l~~al~-~-~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~~~~~l~~~l~~ 719 (929)
.+.+|.++...|++++|++.+.+.+. . .|+++..|..+|.+....+++++|+..|++++..++.. ..+..++.. ..
T Consensus 11 ~l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~ 89 (280)
T PF13429_consen 11 ALRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQ 89 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cc
Confidence 34679999999999999999976554 4 48889999999999999999999999999999998877 444444444 34
Q ss_pred cCCCCCChHHHHHHHHHHhhchhccCch---hHHHHHHHHHHHHcCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHH
Q 002379 720 TNLDPESSTYVIQLLEEALRCPSDGLRK---GQALNNLGSIYVECGKLDQAENCYINALDI----KHTRAHQGLARVYYL 792 (929)
Q Consensus 720 ~~~~~~~~~~a~~~~e~Al~~~~~al~~---~~a~~~lg~~~~~~g~~~eA~~~~~~al~~----~~~~a~~~la~~~~~ 792 (929)
.+ .+++|+..+.++.+. ...+.....++...++++++...++++... .++..|..+|.++.+
T Consensus 90 ~~-----------~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~ 158 (280)
T PF13429_consen 90 DG-----------DPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQ 158 (280)
T ss_dssp ---------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHH
T ss_pred cc-----------cccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHH
Confidence 43 677787777766542 355667778889999999999999997755 456789999999999
Q ss_pred hCCHHHHHHHHHHHHHHccCCHHHHHHHh----hhCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHH
Q 002379 793 KNELKAAYDEMTKLLEKAQYSASAFEKRS----EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELS 868 (929)
Q Consensus 793 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg----~~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~ 868 (929)
.|+.++|+..++++++.+|++..+...++ ..|+.+++...+....+..|.++..+..+|.++...|++++|+..|+
T Consensus 159 ~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~ 238 (280)
T PF13429_consen 159 LGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLE 238 (280)
T ss_dssp CCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccc
Confidence 99999999999999999999999887777 67889998888888888889999999999999999999999999999
Q ss_pred HHHhcCCCchHHH-HHHHHHHHcCCHHHHHHHHHHHhcc
Q 002379 869 KAIAFKPDLQMLH-LRAAFYESIGDLTSAIRDSQAALCL 906 (929)
Q Consensus 869 kal~~~p~~~~~~-~la~~~~~~g~~~~A~~~~~~al~l 906 (929)
++++.+|+++.+. .+|.++...|+.++|...++++++.
T Consensus 239 ~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 239 KALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp HHHHHSTT-HHHHHHHHHHHT------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccc
Confidence 9999999998777 6799999999999999999998753
No 56
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=99.75 E-value=6.8e-18 Score=178.35 Aligned_cols=142 Identities=20% Similarity=0.298 Sum_probs=132.6
Q ss_pred CCEEEEEcC-----eEEEeehhHHhccCHHHHHHhcCCCCcCCCCeeEecCCCCCHHHHHHHhhhHccCCCCCCChhHHH
Q 002379 218 DSVTFCVRD-----KEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFCPGIVL 292 (929)
Q Consensus 218 ~~v~~~v~~-----~~~~~hr~iLaa~S~~F~~mf~~~~~e~~~~~i~~~~~~~~~~~~~~~l~~~Yt~~~~~~~~~~~~ 292 (929)
.+|+|+|++ ..|||||.|||..|.+|.+||+|++.|+...+|.+ +||+|.+|..+|+|||++.+. +..++++
T Consensus 115 adv~fivg~~~~~~q~~paHk~vla~gS~VFdaMf~g~~a~~~s~ei~l--pdvepaaFl~~L~flYsdev~-~~~dtvi 191 (521)
T KOG2075|consen 115 ADVHFIVGEEDGGSQRIPAHKLVLADGSDVFDAMFYGGLAEDASLEIRL--PDVEPAAFLAFLRFLYSDEVK-LAADTVI 191 (521)
T ss_pred ceeEEEeccCCCcccccchhhhhhhcchHHHHHHhccCcccccCceeec--CCcChhHhHHHHHHHhcchhh-hhHHHHH
Confidence 349999974 58999999999999999999999999997789999 999999999999999999999 9999999
Q ss_pred HHHHHhchhChHhHHHHHHHHHHhhcCChhhHHHHHHH-HHHhChHHHHHHHHHHHHhchhhhcCccchhhh
Q 002379 293 ELLSFANRFCCEEMKSACDAHLASLVGDIEDALILIDY-GLEERATLLVASCLQVLLRELPSSLYNPKVMKI 363 (929)
Q Consensus 293 ~ll~~A~~~~~~~l~~~C~~~l~~~~~~~~n~~~~~~~-a~~~~~~~L~~~c~~~i~~~~~~v~~~~~f~~L 363 (929)
.+|.+|++|.++.|.+.|.++|+..+. .+|.+..+-. |..++-++|...|++.|..+|...+..|+|.++
T Consensus 192 ~tl~~AkKY~VpaLer~CVkflr~~l~-~~naf~~L~q~A~lf~ep~Li~~c~e~id~~~~~al~~EGf~di 262 (521)
T KOG2075|consen 192 TTLYAAKKYLVPALERQCVKFLRKNLM-ADNAFLELFQRAKLFDEPSLISICLEVIDKSFEDALTPEGFCDI 262 (521)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhcC-ChHHHHHHHHHHHhhcCHHHHHHHHHHhhhHHHhhhCccceeeh
Confidence 999999999999999999999999999 6666666555 999999999999999999999999999999876
No 57
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.75 E-value=4.3e-14 Score=174.13 Aligned_cols=368 Identities=11% Similarity=-0.016 Sum_probs=224.8
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccC--CHhHHHHHHHHHHHhccHHHHHHHHHHHHh
Q 002379 499 EKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL--SVDCLELRAWLFIAADDYESALRDTLALLA 576 (929)
Q Consensus 499 ~Ai~~~~kal~l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~a~~~~~~g~~~~A~~~~~~al~ 576 (929)
+|...++.... | +...|..+-..+.+.|+++.|...|+++.+... +...+..+...|.+.|+.++|...|+++.+
T Consensus 424 eAl~lf~~M~~--p-d~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~ 500 (1060)
T PLN03218 424 EAFRFAKLIRN--P-TLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVN 500 (1060)
T ss_pred HHHHHHHHcCC--C-CHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHH
Confidence 66665554433 3 355666666677777777777777777765433 445566677777777777777777777765
Q ss_pred hcCC-chhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcC-CCChHHHHHHHHHHHHhc
Q 002379 577 LESN-YMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLIND-PGKSFLRFRQSLLLLRLN 654 (929)
Q Consensus 577 ~~p~-~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~~-p~~~~~~~~lg~~~~~~g 654 (929)
.... +. ..+..+...+...|++++|...+ .++.... ..+...|..+...+.+.|
T Consensus 501 ~Gv~Pdv------vTynaLI~gy~k~G~~eeAl~lf------------------~~M~~~Gv~PD~vTYnsLI~a~~k~G 556 (1060)
T PLN03218 501 AGVEANV------HTFGALIDGCARAGQVAKAFGAY------------------GIMRSKNVKPDRVVFNALISACGQSG 556 (1060)
T ss_pred cCCCCCH------HHHHHHHHHHHHCcCHHHHHHHH------------------HHHHHcCCCCCHHHHHHHHHHHHHCC
Confidence 4321 22 34555666666777777774444 5554432 123556777777777777
Q ss_pred CHHHHHHHHHHHHhc----CCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--cchHHHHHHHHHHHhcCCCCCChH
Q 002379 655 CQKAAMRCLRLARNH----SSSEHERLVYEGWILYDTGHREEALSRAEKSISIE--RTFEAFFLKAYILADTNLDPESST 728 (929)
Q Consensus 655 ~~~~A~~~l~~al~~----~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~--p~~~~~~~l~~~l~~~~~~~~~~~ 728 (929)
++++|.+.|+++... .|+ ...|..+...|.+.|++++|.+.|+++.+.+ |+...|..+...+...+
T Consensus 557 ~~deA~~lf~eM~~~~~gi~PD-~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G------- 628 (1060)
T PLN03218 557 AVDRAFDVLAEMKAETHPIDPD-HITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKG------- 628 (1060)
T ss_pred CHHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcC-------
Confidence 777777777777542 343 4566667777777777777777777777654 22266666666666666
Q ss_pred HHHHHHHHHhhchhccCc----hh-HHHHHHHHHHHHcCCHHHHHHHHHHHHcC---CCHHHHHHHHHHHHHhCCHHHHH
Q 002379 729 YVIQLLEEALRCPSDGLR----KG-QALNNLGSIYVECGKLDQAENCYINALDI---KHTRAHQGLARVYYLKNELKAAY 800 (929)
Q Consensus 729 ~a~~~~e~Al~~~~~al~----~~-~a~~~lg~~~~~~g~~~eA~~~~~~al~~---~~~~a~~~la~~~~~~g~~~~A~ 800 (929)
++++|++.+.+... |. ..|..+...+...|++++|.+.++.+.+. .+..++..+...|.+.|++++|.
T Consensus 629 ----~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~ 704 (1060)
T PLN03218 629 ----DWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKAL 704 (1060)
T ss_pred ----CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHH
Confidence 56666666655532 22 56666777777777777777777777665 23456677777777777777777
Q ss_pred HHHHHHHHH--ccCCHHHHHHHh----hhCCHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 002379 801 DEMTKLLEK--AQYSASAFEKRS----EYSDREMAKNDLNMATQLD-PLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAF 873 (929)
Q Consensus 801 ~~~~~al~~--~p~~~~~~~~lg----~~g~~~~A~~~~~~al~l~-p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~ 873 (929)
+.|+++.+. .| +...|..+. ..|+.++|++.|++..... .-+...|..+...+.+.|++++|.+.+.++++.
T Consensus 705 ~lf~eM~~~g~~P-dvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~ 783 (1060)
T PLN03218 705 ELYEDIKSIKLRP-TVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKED 783 (1060)
T ss_pred HHHHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 777766543 23 233333332 5577777777777655432 124455666666777777777777777777654
Q ss_pred C--CCchHHHHH-HHHHHHcCCHHHHHHHHHHHhccCCC
Q 002379 874 K--PDLQMLHLR-AAFYESIGDLTSAIRDSQAALCLDPN 909 (929)
Q Consensus 874 ~--p~~~~~~~l-a~~~~~~g~~~~A~~~~~~al~l~P~ 909 (929)
. |+...+..+ +.+. +++++|....+..+..++.
T Consensus 784 Gi~pd~~tynsLIglc~---~~y~ka~~l~~~v~~f~~g 819 (1060)
T PLN03218 784 GIKPNLVMCRCITGLCL---RRFEKACALGEPVVSFDSG 819 (1060)
T ss_pred CCCCCHHHHHHHHHHHH---HHHHHHhhhhhhhhhhhcc
Confidence 3 333333322 3221 3456666655555555443
No 58
>PRK12370 invasion protein regulator; Provisional
Probab=99.75 E-value=3.6e-16 Score=184.12 Aligned_cols=244 Identities=15% Similarity=0.001 Sum_probs=173.1
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHHh---------CCHHHHHHHHHHHhcccC-CHhHHHHHHHHHHHhccHHHH
Q 002379 498 REKIVDLNYASELDPTLSFPYKYRAVAKMEE---------GQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESA 567 (929)
Q Consensus 498 ~~Ai~~~~kal~l~P~~~~a~~~~a~~~~~~---------g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~~g~~~~A 567 (929)
++|+..|+++++++|+++.+|..+|.++... +++++|+..++++++++| ++..+..+|.++...|++++|
T Consensus 278 ~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A 357 (553)
T PRK12370 278 QQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVG 357 (553)
T ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHH
Confidence 3899999999999999999999999887644 337788888888888877 677777788888888888888
Q ss_pred HHHHHHHHhhcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHH
Q 002379 568 LRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQS 647 (929)
Q Consensus 568 ~~~~~~al~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~lg 647 (929)
+..|+++++++|++. .++..+|.++...|++++|..++ +++++.+|.++..+..++
T Consensus 358 ~~~~~~Al~l~P~~~------~a~~~lg~~l~~~G~~~eAi~~~------------------~~Al~l~P~~~~~~~~~~ 413 (553)
T PRK12370 358 SLLFKQANLLSPISA------DIKYYYGWNLFMAGQLEEALQTI------------------NECLKLDPTRAAAGITKL 413 (553)
T ss_pred HHHHHHHHHhCCCCH------HHHHHHHHHHHHCCCHHHHHHHH------------------HHHHhcCCCChhhHHHHH
Confidence 888888888888887 66677777777778888775555 788888887776666666
Q ss_pred HHHHHhcCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHHHHHhcCCCCCC
Q 002379 648 LLLLRLNCQKAAMRCLRLARNHS-SSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPES 726 (929)
Q Consensus 648 ~~~~~~g~~~~A~~~l~~al~~~-p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~l~~~l~~~~~~~~~ 726 (929)
.+++..|++++|+..+++++... |+++..+..+|.++...|++++|...++++....|+.
T Consensus 414 ~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~------------------- 474 (553)
T PRK12370 414 WITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITG------------------- 474 (553)
T ss_pred HHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchh-------------------
Confidence 66777778888888888877664 6677777778888888888888888877776665554
Q ss_pred hHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHhCCHHHHHHHHH
Q 002379 727 STYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKAAYDEMT 804 (929)
Q Consensus 727 ~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~--~~~a~~~la~~~~~~g~~~~A~~~~~ 804 (929)
..+...++..|...| ++|...+++.++.. .+.-....+.+|...|+.+.+... +
T Consensus 475 ---------------------~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~ 530 (553)
T PRK12370 475 ---------------------LIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-N 530 (553)
T ss_pred ---------------------HHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-H
Confidence 122344455555555 35555555544441 111122266666667776666665 5
Q ss_pred HHHH
Q 002379 805 KLLE 808 (929)
Q Consensus 805 ~al~ 808 (929)
++.+
T Consensus 531 ~~~~ 534 (553)
T PRK12370 531 KFKN 534 (553)
T ss_pred Hhhc
Confidence 5444
No 59
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.74 E-value=3.9e-16 Score=168.86 Aligned_cols=210 Identities=18% Similarity=0.138 Sum_probs=129.4
Q ss_pred HHHHHHHHhcCC----CChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002379 626 LAVINQMLINDP----GKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSI 701 (929)
Q Consensus 626 l~~~~~al~~~p----~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al 701 (929)
+..+.+++...| ..+..|+.+|.+|...|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+..|++++
T Consensus 46 i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al 125 (296)
T PRK11189 46 LARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVL 125 (296)
T ss_pred HHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 445567775333 3366788888888888888888888888888888888888888888888888888888888888
Q ss_pred hhccchHHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCHH
Q 002379 702 SIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIKHTR 781 (929)
Q Consensus 702 ~~~p~~~~~~~l~~~l~~~~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~~~ 781 (929)
+++|++ ..++.++|.++...|++++|++.|+++++.++.+
T Consensus 126 ~l~P~~----------------------------------------~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~ 165 (296)
T PRK11189 126 ELDPTY----------------------------------------NYAYLNRGIALYYGGRYELAQDDLLAFYQDDPND 165 (296)
T ss_pred HhCCCC----------------------------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 888877 4456777777777788888888888887774433
Q ss_pred HHHHHH-HHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHh-hhCCHH--HHHHHH----HHHHhcCCCCcHHHHHHHHH
Q 002379 782 AHQGLA-RVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS-EYSDRE--MAKNDL----NMATQLDPLRTYPYRYRAAV 853 (929)
Q Consensus 782 a~~~la-~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg-~~g~~~--~A~~~~----~~al~l~p~~~~~~~~la~~ 853 (929)
.+..+. .+....+++++|+..+.+.+...+...+.+.... ..|+.. +++..+ +...+++|..+++|+++|.+
T Consensus 166 ~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~ 245 (296)
T PRK11189 166 PYRALWLYLAESKLDPKQAKENLKQRYEKLDKEQWGWNIVEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKY 245 (296)
T ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhhCCccccHHHHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Confidence 222221 1233456677777777665544322222211111 122221 112111 12223334444555555555
Q ss_pred HHhcCCHHHHHHHHHHHHhcCC
Q 002379 854 LMDDQKEVEAVEELSKAIAFKP 875 (929)
Q Consensus 854 ~~~~g~~~eA~~~l~kal~~~p 875 (929)
+...|++++|+..|+++++.+|
T Consensus 246 ~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 246 YLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred HHHCCCHHHHHHHHHHHHHhCC
Confidence 5555555555555555555554
No 60
>PRK12370 invasion protein regulator; Provisional
Probab=99.74 E-value=9.1e-16 Score=180.75 Aligned_cols=270 Identities=12% Similarity=-0.023 Sum_probs=157.3
Q ss_pred HHHHHHHHHH---hccHHHHHHHHHHHHhhcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHH
Q 002379 551 LELRAWLFIA---ADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLA 627 (929)
Q Consensus 551 ~~~~a~~~~~---~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~ 627 (929)
++.+|..++. .+++++|+..|+++++++|++. .++..++.++...+.+.... ...+...++.
T Consensus 261 ~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a------~a~~~La~~~~~~~~~g~~~---------~~~~~~~A~~ 325 (553)
T PRK12370 261 VYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSI------APYCALAECYLSMAQMGIFD---------KQNAMIKAKE 325 (553)
T ss_pred HHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccH------HHHHHHHHHHHHHHHcCCcc---------cchHHHHHHH
Confidence 4455554432 3567788888888888888877 55555665554433211000 0011123355
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch
Q 002379 628 VINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF 707 (929)
Q Consensus 628 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~ 707 (929)
.++++++.+|+++.++..+|.++...|++++|+..|+++++++|+++.+++.+|.++...|++++|+..++++++++|.+
T Consensus 326 ~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~ 405 (553)
T PRK12370 326 HAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTR 405 (553)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Confidence 56666666666666666666666666666666666666666666666666666666666666666666666666666654
Q ss_pred HHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC---CCHHHHH
Q 002379 708 EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI---KHTRAHQ 784 (929)
Q Consensus 708 ~~~~~l~~~l~~~~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~---~~~~a~~ 784 (929)
..++..++.++...|++++|+..+++++.. +++.++.
T Consensus 406 ----------------------------------------~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~ 445 (553)
T PRK12370 406 ----------------------------------------AAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLS 445 (553)
T ss_pred ----------------------------------------hhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHH
Confidence 112233444455566666666666666544 2344556
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHhhhCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHH
Q 002379 785 GLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAV 864 (929)
Q Consensus 785 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~ 864 (929)
.+|.++...|++++|...+.++.. ..|....++..++..|...|+ +|.
T Consensus 446 ~la~~l~~~G~~~eA~~~~~~~~~------------------------------~~~~~~~~~~~l~~~~~~~g~--~a~ 493 (553)
T PRK12370 446 MQVMFLSLKGKHELARKLTKEIST------------------------------QEITGLIAVNLLYAEYCQNSE--RAL 493 (553)
T ss_pred HHHHHHHhCCCHHHHHHHHHHhhh------------------------------ccchhHHHHHHHHHHHhccHH--HHH
Confidence 666666666666666665555444 444455556666767777663 666
Q ss_pred HHHHHHHhcCCCch-HHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Q 002379 865 EELSKAIAFKPDLQ-MLHLRAAFYESIGDLTSAIRDSQAALCLDP 908 (929)
Q Consensus 865 ~~l~kal~~~p~~~-~~~~la~~~~~~g~~~~A~~~~~~al~l~P 908 (929)
..+++.++.....+ .....+.+|.-.|+.+.|..+ +++.+.+.
T Consensus 494 ~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~ 537 (553)
T PRK12370 494 PTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNEDN 537 (553)
T ss_pred HHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhccch
Confidence 66666554332222 122367777777887777777 66665543
No 61
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.73 E-value=1.7e-14 Score=161.23 Aligned_cols=380 Identities=16% Similarity=0.106 Sum_probs=219.9
Q ss_pred CChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccC-CHhHHHHHHHHHHHhccHHHHHHHHHHHHhhc--CCchhhhcccc
Q 002379 513 TLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLALLALE--SNYMMFHGRVS 589 (929)
Q Consensus 513 ~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~ 589 (929)
+++..|-.+...+...|+++.+.+.|++++...- ..+.|+..+..+...|.-..|+...+..+... |++. .
T Consensus 321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~------s 394 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDI------S 394 (799)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcc------h
Confidence 4555566666666666666666666666653222 33446666666666666666666666666665 4444 2
Q ss_pred HHHH-HHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhc-----CCCChHHHHHHHHHHHHh----------
Q 002379 590 GDHL-VKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLIN-----DPGKSFLRFRQSLLLLRL---------- 653 (929)
Q Consensus 590 a~~l-l~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~-----~p~~~~~~~~lg~~~~~~---------- 653 (929)
.+.+ ...+....+..++++.+. .+++.. +--.+..+..+|.+|..+
T Consensus 395 ~~Lmasklc~e~l~~~eegldYA------------------~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR 456 (799)
T KOG4162|consen 395 VLLMASKLCIERLKLVEEGLDYA------------------QKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSER 456 (799)
T ss_pred HHHHHHHHHHhchhhhhhHHHHH------------------HHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHH
Confidence 2222 223334455555554444 333321 111233344444444321
Q ss_pred -cCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch--HHHHHHHHHHHhcCCCCCChHHH
Q 002379 654 -NCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF--EAFFLKAYILADTNLDPESSTYV 730 (929)
Q Consensus 654 -g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~--~~~~~l~~~l~~~~~~~~~~~~a 730 (929)
....++++.++++++.+|+|+.+.++++.-|...++.+.|.+..++++++++.+ .+|..++.++...+
T Consensus 457 ~~~h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~k--------- 527 (799)
T KOG4162|consen 457 DALHKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQK--------- 527 (799)
T ss_pred HHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhh---------
Confidence 112344555555555555555555555555555555555555555555554333 44555555444443
Q ss_pred HHHHHHHhhchhccCchh----HHHHHHHHHHHHcCCHHHHHHHHHHHHcC-C----------CHHHHHHHHHHHHHhCC
Q 002379 731 IQLLEEALRCPSDGLRKG----QALNNLGSIYVECGKLDQAENCYINALDI-K----------HTRAHQGLARVYYLKNE 795 (929)
Q Consensus 731 ~~~~e~Al~~~~~al~~~----~a~~~lg~~~~~~g~~~eA~~~~~~al~~-~----------~~~a~~~la~~~~~~g~ 795 (929)
++.+|+.....++... ........+-...++.++|+......+.+ . ........+......++
T Consensus 528 --r~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q 605 (799)
T KOG4162|consen 528 --RLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQ 605 (799)
T ss_pred --hhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCccc
Confidence 3333333333332210 00111112222345566666555555544 1 00111112222222333
Q ss_pred HHHHHHHHHHHHHHc-------------------cCCH-------HHHHHHh----hhCCHHHHHHHHHHHHhcCCCCcH
Q 002379 796 LKAAYDEMTKLLEKA-------------------QYSA-------SAFEKRS----EYSDREMAKNDLNMATQLDPLRTY 845 (929)
Q Consensus 796 ~~~A~~~~~~al~~~-------------------p~~~-------~~~~~lg----~~g~~~~A~~~~~~al~l~p~~~~ 845 (929)
..+|....+++.... |... ..|...+ ..++.++|..++.++-.++|..+.
T Consensus 606 ~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~ 685 (799)
T KOG4162|consen 606 PTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSAS 685 (799)
T ss_pred ccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHH
Confidence 444444443333211 1111 1233333 567889999999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCch-HHHHHHHHHHHcCCHHHHHH--HHHHHhccCCCCHHHHHHHHHHHh
Q 002379 846 PYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQ-MLHLRAAFYESIGDLTSAIR--DSQAALCLDPNHMETLDLYNRARD 922 (929)
Q Consensus 846 ~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~-~~~~la~~~~~~g~~~~A~~--~~~~al~l~P~~~~a~~~~~~l~~ 922 (929)
.|+..|..+...|++.+|.+.|..++.++|++. ....+|.++...|+..-|.. .+..++++||.++++|+.++.+-+
T Consensus 686 ~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k 765 (799)
T KOG4162|consen 686 VYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFK 765 (799)
T ss_pred HHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999996 55588999999999988888 999999999999999999999988
Q ss_pred hhhhh
Q 002379 923 QASHQ 927 (929)
Q Consensus 923 ~~~~~ 927 (929)
+.++.
T Consensus 766 ~~Gd~ 770 (799)
T KOG4162|consen 766 KLGDS 770 (799)
T ss_pred Hccch
Confidence 76653
No 62
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.73 E-value=9.8e-16 Score=165.69 Aligned_cols=228 Identities=17% Similarity=0.137 Sum_probs=180.5
Q ss_pred cCHHHHHHHHHHHHhcC---Cc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHHHHHhcCCCCCChHH
Q 002379 654 NCQKAAMRCLRLARNHS---SS-EHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTY 729 (929)
Q Consensus 654 g~~~~A~~~l~~al~~~---p~-~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~l~~~l~~~~~~~~~~~~ 729 (929)
+..+.++..+.+++... |. .+..|+.+|.++...|++++|+..|+++++++|++
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~---------------------- 97 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDM---------------------- 97 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC----------------------
Confidence 46688899999999643 33 37789999999999999999999999999999988
Q ss_pred HHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 002379 730 VIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI--KHTRAHQGLARVYYLKNELKAAYDEMTKLL 807 (929)
Q Consensus 730 a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~--~~~~a~~~la~~~~~~g~~~~A~~~~~~al 807 (929)
..+|+++|.++...|++++|+..|++++++ ++..++.++|.++...|++++|++.+++++
T Consensus 98 ------------------~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al 159 (296)
T PRK11189 98 ------------------ADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFY 159 (296)
T ss_pred ------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 567899999999999999999999999999 457899999999999999999999999999
Q ss_pred HHccCCHH--HHHHHh-hhCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHH--HHHHHHHH----HhcCCCch
Q 002379 808 EKAQYSAS--AFEKRS-EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVE--AVEELSKA----IAFKPDLQ 878 (929)
Q Consensus 808 ~~~p~~~~--~~~~lg-~~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~e--A~~~l~ka----l~~~p~~~ 878 (929)
+.+|+++. .|..+. ..+++++|+..+.++....+... |. .+.++...|+..+ +++.+.+. +++.|+..
T Consensus 160 ~~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~--~~-~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ 236 (296)
T PRK11189 160 QDDPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDKEQ--WG-WNIVEFYLGKISEETLMERLKAGATDNTELAERLC 236 (296)
T ss_pred HhCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCccc--cH-HHHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHH
Confidence 99999874 333333 56789999999988775543222 22 3455555666543 33333332 24444444
Q ss_pred -HHHHHHHHHHHcCCHHHHHHHHHHHhccCC-CCHHHHHHHHHHHhhh
Q 002379 879 -MLHLRAAFYESIGDLTSAIRDSQAALCLDP-NHMETLDLYNRARDQA 924 (929)
Q Consensus 879 -~~~~la~~~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~~~~l~~~~ 924 (929)
.++++|.++..+|++++|+.+|++|++.+| ++.+....+-.+..+.
T Consensus 237 ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~~~~e~~~~~ 284 (296)
T PRK11189 237 ETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRYALLELALLG 284 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHH
Confidence 455889999999999999999999999996 7777777666665553
No 63
>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.72 E-value=1.2e-17 Score=155.18 Aligned_cols=141 Identities=21% Similarity=0.302 Sum_probs=121.3
Q ss_pred CCCCCCEEEEEc---CeEEEeehhHHhccCHHHHHHhcCCCCcCCCCeeEecCCCCCHHHHHHHhhhHccCCCCC-CChh
Q 002379 214 LEEDDSVTFCVR---DKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDL-FCPG 289 (929)
Q Consensus 214 ~~~~~~v~~~v~---~~~~~~hr~iLaa~S~~F~~mf~~~~~e~~~~~i~~~~~~~~~~~~~~~l~~~Yt~~~~~-~~~~ 289 (929)
....++|+|.++ ++.++|||.|||+||++++ |.++-.|.. .+..+ +|+++++|..+++||||++++. ...+
T Consensus 63 k~qfSDlk~K~~gns~k~i~AHKfVLAARsD~Wk--faN~~deks-e~~~~--dDad~Ea~~t~iRWIYTDEidfk~dD~ 137 (280)
T KOG4591|consen 63 KEQFSDLKFKFAGNSDKHIPAHKFVLAARSDFWK--FANGGDEKS-EELDL--DDADFEAFHTAIRWIYTDEIDFKEDDE 137 (280)
T ss_pred cccccceeEEecCCccccCchhhhhhhhhcchhh--hccCCCcch-hhhcc--cccCHHHHHHhheeeeccccccccchH
Confidence 445566999998 5789999999999999886 445544433 34566 8999999999999999999993 4556
Q ss_pred HHHHHHHHhchhChHhHHHHHHHHHHhhcCChhhHHHHHHHHHHhChHHHHHHHHHHHHhchhhhcCccchh
Q 002379 290 IVLELLSFANRFCCEEMKSACDAHLASLVGDIEDALILIDYGLEERATLLVASCLQVLLRELPSSLYNPKVM 361 (929)
Q Consensus 290 ~~~~ll~~A~~~~~~~l~~~C~~~l~~~~~~~~n~~~~~~~a~~~~~~~L~~~c~~~i~~~~~~v~~~~~f~ 361 (929)
.++++..+|++|+++-|+..|++-+-..++ ++||+.++++|++.++..|...|-..|..+++++- -+.|.
T Consensus 138 ~L~el~e~An~FqLe~Lke~C~k~l~a~l~-V~NCIk~Ye~AEe~n~~qL~n~~~eiIA~~W~dL~-~a~Fa 207 (280)
T KOG4591|consen 138 FLLELCELANRFQLELLKERCEKGLGALLH-VDNCIKFYEFAEELNARQLMNVAAEIIAGAWDDLG-KADFA 207 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHhh-HhhHHHHHHHHHHhhHHHHHHHHHHHHHhhccccC-hHHHH
Confidence 788999999999999999999999999999 99999999999999999999999999999998763 34454
No 64
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=3.2e-14 Score=147.81 Aligned_cols=360 Identities=14% Similarity=0.036 Sum_probs=265.1
Q ss_pred hhHHHHhcccHHHHHHHHHHHHhcCccccHH-HHHHHHHHhchHHHHHHHHHhhhccCCCchhhhH-HHHHHhhhh----
Q 002379 425 LGCVMFEREEYKDACYYFEAAADAGHIYSLA-GLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQ-ERSLYNLGR---- 498 (929)
Q Consensus 425 lG~~~~~~g~y~~A~~~f~~al~~~~~~~~a-~la~~~~~~g~a~~a~~~~~~~~~~~~~~~~~~~-~~~l~~~~~---- 498 (929)
+++.+-.-++-.++.-.|...+...|.-..+ +......-.|....+......-.++..++.|.+. ..+..+.++
T Consensus 136 la~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a 215 (564)
T KOG1174|consen 136 LARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELGVNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDA 215 (564)
T ss_pred HHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHhhcchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchh
Confidence 3344444444446666666666555543222 1111222333333333322222333344444432 333344444
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccC-CHhHHHHHHHHHHHhccHHHHHHHHHHHHhh
Q 002379 499 EKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLALLAL 577 (929)
Q Consensus 499 ~Ai~~~~kal~l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~ 577 (929)
.+..++-.-...-|++...+..+|.+++..|++.+|+..|+++..++| +....-..|.++...|+++.-.......+..
T Consensus 216 ~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~ 295 (564)
T KOG1174|consen 216 SQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAK 295 (564)
T ss_pred hhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhh
Confidence 456666777788899999999999999999999999999999998887 5555666788888999999988888888877
Q ss_pred cCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHH
Q 002379 578 ESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQK 657 (929)
Q Consensus 578 ~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~ 657 (929)
+.... .-+...+.+....+++..|..+. +++++.+|++..++...|.++...|+.+
T Consensus 296 ~~~ta------~~wfV~~~~l~~~K~~~rAL~~~------------------eK~I~~~~r~~~alilKG~lL~~~~R~~ 351 (564)
T KOG1174|consen 296 VKYTA------SHWFVHAQLLYDEKKFERALNFV------------------EKCIDSEPRNHEALILKGRLLIALERHT 351 (564)
T ss_pred hhcch------hhhhhhhhhhhhhhhHHHHHHHH------------------HHHhccCcccchHHHhccHHHHhccchH
Confidence 65544 33344455556666788885555 9999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch-HHHHHHH-HHHHhcCCCCCChHHHHHHHH
Q 002379 658 AAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKA-YILADTNLDPESSTYVIQLLE 735 (929)
Q Consensus 658 ~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~~~~~l~-~~l~~~~~~~~~~~~a~~~~e 735 (929)
+|+-.|+.|..+.|...+.|..+-.+|...|++.||....+.++..-|.+ .+...+| ..+. .++. .-+
T Consensus 352 ~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~---~dp~-------~rE 421 (564)
T KOG1174|consen 352 QAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLF---PDPR-------MRE 421 (564)
T ss_pred HHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeec---cCch-------hHH
Confidence 99999999999999999999999999999999999999999999998888 5555443 2221 1222 335
Q ss_pred HHhhchhccCc--hh--HHHHHHHHHHHHcCCHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc
Q 002379 736 EALRCPSDGLR--KG--QALNNLGSIYVECGKLDQAENCYINALDI-KHTRAHQGLARVYYLKNELKAAYDEMTKLLEKA 810 (929)
Q Consensus 736 ~Al~~~~~al~--~~--~a~~~lg~~~~~~g~~~eA~~~~~~al~~-~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~ 810 (929)
+|.+.++++++ |+ .+-..++..+...|.+++++..+++.+.. .+...+..+|.++...+.+++|.+.|..++.++
T Consensus 422 KAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 422 KAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred HHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 55555555543 43 67788999999999999999999999988 566788999999999999999999999999999
Q ss_pred cCCHHHHH
Q 002379 811 QYSASAFE 818 (929)
Q Consensus 811 p~~~~~~~ 818 (929)
|++.....
T Consensus 502 P~~~~sl~ 509 (564)
T KOG1174|consen 502 PKSKRTLR 509 (564)
T ss_pred ccchHHHH
Confidence 99866643
No 65
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.70 E-value=2.8e-16 Score=158.16 Aligned_cols=201 Identities=12% Similarity=0.032 Sum_probs=114.1
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHH
Q 002379 552 ELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQ 631 (929)
Q Consensus 552 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~ 631 (929)
..+|.||+.+|-+.+|.+.++..++..|.- +...++..+|....+...|+..+ .+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~-------dTfllLskvY~ridQP~~AL~~~------------------~~ 281 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHP-------DTFLLLSKVYQRIDQPERALLVI------------------GE 281 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCch-------hHHHHHHHHHHHhccHHHHHHHH------------------hh
Confidence 355666666666666666666666654432 33445566666666655553332 55
Q ss_pred HHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHH
Q 002379 632 MLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFF 711 (929)
Q Consensus 632 al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~ 711 (929)
.++.-|.+...+..++.++..++++++|.+.|+.+++.+|.+.++.-.+|.-|+..++.+-|+.+|++.+++.-.+
T Consensus 282 gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~s---- 357 (478)
T KOG1129|consen 282 GLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQS---- 357 (478)
T ss_pred hhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCC----
Confidence 6666666666666666666666666666666666666666666666666666666666666666666666544333
Q ss_pred HHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC-C----CHHHHHHH
Q 002379 712 LKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI-K----HTRAHQGL 786 (929)
Q Consensus 712 ~l~~~l~~~~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~-~----~~~a~~~l 786 (929)
++.+.|+|.+.+..+++|-++.+|++|+.. . ..++|+++
T Consensus 358 ------------------------------------peLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNl 401 (478)
T KOG1129|consen 358 ------------------------------------PELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNL 401 (478)
T ss_pred ------------------------------------hHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhcc
Confidence 344555565555566666666666665554 1 12455555
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHccCCHHHH
Q 002379 787 ARVYYLKNELKAAYDEMTKLLEKAQYSASAF 817 (929)
Q Consensus 787 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 817 (929)
|.+..-.|++.-|...|+-++..++++..++
T Consensus 402 g~vaV~iGD~nlA~rcfrlaL~~d~~h~eal 432 (478)
T KOG1129|consen 402 GFVAVTIGDFNLAKRCFRLALTSDAQHGEAL 432 (478)
T ss_pred ceeEEeccchHHHHHHHHHHhccCcchHHHH
Confidence 5555555554444444444444443333333
No 66
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.69 E-value=6.1e-15 Score=143.15 Aligned_cols=206 Identities=18% Similarity=0.115 Sum_probs=179.9
Q ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Q 002379 640 SFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILAD 719 (929)
Q Consensus 640 ~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~l~~~l~~ 719 (929)
..+...+|.-|+..|++..|...+++|++++|++..+|..++.+|...|+.+.|-+.|++|++++|++
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~------------ 102 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNN------------ 102 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCc------------
Confidence 45788999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHHhCC
Q 002379 720 TNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI----KHTRAHQGLARVYYLKNE 795 (929)
Q Consensus 720 ~~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~----~~~~a~~~la~~~~~~g~ 795 (929)
+++++|.|..++.+|++++|...|++|+.. .+.+++.++|.|..+.|+
T Consensus 103 ----------------------------GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq 154 (250)
T COG3063 103 ----------------------------GDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQ 154 (250)
T ss_pred ----------------------------cchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCC
Confidence 778999999999999999999999999988 567899999999999999
Q ss_pred HHHHHHHHHHHHHHccCCHHHHHHHhhhCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 002379 796 LKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKP 875 (929)
Q Consensus 796 ~~~A~~~~~~al~~~p~~~~~~~~lg~~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p 875 (929)
++.|...|+++++.+ |+.+.+...++...++.|+|-.|...+++.....+
T Consensus 155 ~~~A~~~l~raL~~d------------------------------p~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~ 204 (250)
T COG3063 155 FDQAEEYLKRALELD------------------------------PQFPPALLELARLHYKAGDYAPARLYLERYQQRGG 204 (250)
T ss_pred chhHHHHHHHHHHhC------------------------------cCCChHHHHHHHHHHhcccchHHHHHHHHHHhccc
Confidence 888888777776665 45566667778888999999999999998877666
Q ss_pred Cc-hHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHH
Q 002379 876 DL-QMLHLRAAFYESIGDLTSAIRDSQAALCLDPNHMETLD 915 (929)
Q Consensus 876 ~~-~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~ 915 (929)
-. ..+++...+-...||-+.|-++=.+.....|..++...
T Consensus 205 ~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~q~ 245 (250)
T COG3063 205 AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEYQT 245 (250)
T ss_pred ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHh
Confidence 44 34555577778899999999888888889998877543
No 67
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.69 E-value=6.9e-16 Score=155.39 Aligned_cols=242 Identities=15% Similarity=0.032 Sum_probs=219.3
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHhcccCCHhHHHHHHHHHHHhccHHHHHHHHHHHHhhcCCchhhhccccHHHHHHHHH
Q 002379 519 KYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLN 598 (929)
Q Consensus 519 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~ll~~~~ 598 (929)
..+|.||++.|-+.+|.+.++..++..+.++.+..++.+|....+...|+..|.+.++..|.+. ..+.-.+.++
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~V------T~l~g~ARi~ 300 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDV------TYLLGQARIH 300 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchh------hhhhhhHHHH
Confidence 5689999999999999999999999999999999999999999999999999999999999998 4455578889
Q ss_pred HhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHH
Q 002379 599 HHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLV 678 (929)
Q Consensus 599 ~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~ 678 (929)
..+++++.|.++. ..+++.+|.+.++..-.|.-|+.-++++-|+.+|++.+++.-.+++.+.
T Consensus 301 eam~~~~~a~~lY------------------k~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~ 362 (478)
T KOG1129|consen 301 EAMEQQEDALQLY------------------KLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFC 362 (478)
T ss_pred HHHHhHHHHHHHH------------------HHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHh
Confidence 9999999995555 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHH
Q 002379 679 YEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIY 758 (929)
Q Consensus 679 ~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~l~~~l~~~~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~ 758 (929)
++|.+.+..++++-++..|++++....+. -+.+++|+|+|.+.
T Consensus 363 NigLCC~yaqQ~D~~L~sf~RAlstat~~-------------------------------------~~aaDvWYNlg~va 405 (478)
T KOG1129|consen 363 NIGLCCLYAQQIDLVLPSFQRALSTATQP-------------------------------------GQAADVWYNLGFVA 405 (478)
T ss_pred hHHHHHHhhcchhhhHHHHHHHHhhccCc-------------------------------------chhhhhhhccceeE
Confidence 99999999999999999999999764422 01257799999999
Q ss_pred HHcCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHh
Q 002379 759 VECGKLDQAENCYINALDI--KHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS 821 (929)
Q Consensus 759 ~~~g~~~eA~~~~~~al~~--~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 821 (929)
...|++.-|..+|+-++.. ++..++.+||.+-.+.|+.++|...+..+-...|+-.+..++++
T Consensus 406 V~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~~~Nl~ 470 (478)
T KOG1129|consen 406 VTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEVTTNLQ 470 (478)
T ss_pred EeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcccccccccee
Confidence 9999999999999999988 67789999999999999999999999999999998776655554
No 68
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=8.3e-16 Score=159.98 Aligned_cols=178 Identities=20% Similarity=0.160 Sum_probs=123.3
Q ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch-HHHHHHHHHHH
Q 002379 640 SFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILA 718 (929)
Q Consensus 640 ~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~~~~~l~~~l~ 718 (929)
..+-...+.++..+|++++|...--..+++++.+.++++..|.+++..++.+.|+..|++++.++|+. .+- .+..
T Consensus 169 ~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk----~~~~ 244 (486)
T KOG0550|consen 169 FKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSK----SASM 244 (486)
T ss_pred hHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHH----hHhh
Confidence 45566778899999999999999999999999999999999999999999999999999999999987 110 0000
Q ss_pred hcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCH------HHHHHHHHHHHH
Q 002379 719 DTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIKHT------RAHQGLARVYYL 792 (929)
Q Consensus 719 ~~~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~~------~a~~~la~~~~~ 792 (929)
. .+.-..+...|+-..+.|++..|.++|..+|.++|. ..|.++|.+...
T Consensus 245 ~-------------------------~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~r 299 (486)
T KOG0550|consen 245 M-------------------------PKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIR 299 (486)
T ss_pred h-------------------------HHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcc
Confidence 0 001233455555555566666666666555555322 123333333333
Q ss_pred hCCHHHHHHHHHHHHHHccCCHHHHHHHhhhCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 002379 793 KNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIA 872 (929)
Q Consensus 793 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~ 872 (929)
+ |+..+|+...+.++.++|....++...|.++...++|++|++.|+++++
T Consensus 300 L------------------------------grl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q 349 (486)
T KOG0550|consen 300 L------------------------------GRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQ 349 (486)
T ss_pred c------------------------------CCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3 4444444445555555666667778888888888888888888888887
Q ss_pred cCCC
Q 002379 873 FKPD 876 (929)
Q Consensus 873 ~~p~ 876 (929)
...+
T Consensus 350 ~~~s 353 (486)
T KOG0550|consen 350 LEKD 353 (486)
T ss_pred hccc
Confidence 7665
No 69
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.68 E-value=1.4e-16 Score=171.98 Aligned_cols=258 Identities=18% Similarity=0.120 Sum_probs=74.3
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHhccc--C-CHhHHHHHHHHHHHhccHHHHHHHHHHHHhhcCCchhhhccccHHHHHH
Q 002379 519 KYRAVAKMEEGQIRAAISEIDRIIVFK--L-SVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVK 595 (929)
Q Consensus 519 ~~~a~~~~~~g~~~~A~~~~~~al~~~--~-~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~ll~ 595 (929)
+.+|.++...|++++|++.+.+.+... + ++..+..+|.+....+++++|+..|++++..++.++ .....+.
T Consensus 12 l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~------~~~~~l~ 85 (280)
T PF13429_consen 12 LRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANP------QDYERLI 85 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc------ccccccc
Confidence 355777888888888888886554333 2 556667777777777888888888888777766655 2222223
Q ss_pred HHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--Cch
Q 002379 596 LLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHS--SSE 673 (929)
Q Consensus 596 ~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~--p~~ 673 (929)
.+ ...+++++|...+ .++.+.. .++..+.....++...++++++...++++.... +.+
T Consensus 86 ~l-~~~~~~~~A~~~~------------------~~~~~~~-~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 145 (280)
T PF13429_consen 86 QL-LQDGDPEEALKLA------------------EKAYERD-GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDS 145 (280)
T ss_dssp ----------------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-
T ss_pred cc-ccccccccccccc------------------ccccccc-cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCC
Confidence 32 3444555553333 3443333 234444555555566666666666666654433 445
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHH
Q 002379 674 HERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNN 753 (929)
Q Consensus 674 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~l~~~l~~~~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~ 753 (929)
+..|..+|.++.+.|+.++|+..|+++++.+|++ ..+...
T Consensus 146 ~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~----------------------------------------~~~~~~ 185 (280)
T PF13429_consen 146 ARFWLALAEIYEQLGDPDKALRDYRKALELDPDD----------------------------------------PDARNA 185 (280)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-----------------------------------------HHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC----------------------------------------HHHHHH
Confidence 5556666666666666666666666666666655 233444
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHhhhCCHHHHHH
Q 002379 754 LGSIYVECGKLDQAENCYINALDI--KHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKN 831 (929)
Q Consensus 754 lg~~~~~~g~~~eA~~~~~~al~~--~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~g~~~~A~~ 831 (929)
++.++...|+++++...+....+. .++..+..+|.++...|++++|+..
T Consensus 186 l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~----------------------------- 236 (280)
T PF13429_consen 186 LAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEY----------------------------- 236 (280)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHH-----------------------------
T ss_pred HHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccc-----------------------------
Confidence 555555555555544444444433 2334445555555555555555555
Q ss_pred HHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 002379 832 DLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIA 872 (929)
Q Consensus 832 ~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~ 872 (929)
|+++++.+|+++..+..+|.++...|+.++|..++++++.
T Consensus 237 -~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 237 -LEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp -HHHHHHHSTT-HHHHHHHHHHHT-----------------
T ss_pred -cccccccccccccccccccccccccccccccccccccccc
Confidence 5555555666677777888899999999999988888765
No 70
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.68 E-value=9.3e-14 Score=157.83 Aligned_cols=303 Identities=13% Similarity=0.040 Sum_probs=225.2
Q ss_pred HHHHHHHHhhHHHHhcccHHHHHHHHHHHHhcCccccHH--HHHHHHHHhchHHHHHHHHHhhhccCCCchhhhHHHHHH
Q 002379 417 QRMLALHQLGCVMFEREEYKDACYYFEAAADAGHIYSLA--GLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLY 494 (929)
Q Consensus 417 ~~a~~~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~~~a--~la~~~~~~g~a~~a~~~~~~~~~~~~~~~~~~~~~~l~ 494 (929)
.++......|...+..|+++.|.+.+.++.+..|..... ..+++...+|
T Consensus 82 ~k~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g----------------------------- 132 (409)
T TIGR00540 82 RKAQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRG----------------------------- 132 (409)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCC-----------------------------
Confidence 356666788999999999999999999998887765442 1222222222
Q ss_pred hhhhHHHHHHHHHHhcCCCCh-HHHHHHHHHHHHhCCHHHHHHHHHHHhcccC-CHhHHHHHHHHHHHhccHHHHHHHHH
Q 002379 495 NLGREKIVDLNYASELDPTLS-FPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTL 572 (929)
Q Consensus 495 ~~~~~Ai~~~~kal~l~P~~~-~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~~g~~~~A~~~~~ 572 (929)
+.+.|...+.++.+..|+.. ......+.++...|+++.|...++++.+..| ++..+...+.++...|++++|+..+.
T Consensus 133 -~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~ 211 (409)
T TIGR00540 133 -DEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIID 211 (409)
T ss_pred -CHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 23367778888888888875 4666679999999999999999999999988 88889999999999999999999999
Q ss_pred HHHhhcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCC----CChHHHHHHHH
Q 002379 573 ALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDP----GKSFLRFRQSL 648 (929)
Q Consensus 573 ~al~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~~p----~~~~~~~~lg~ 648 (929)
+..+....++............+.+ ..+..+.+ ...+.++....| +++.++...+.
T Consensus 212 ~l~k~~~~~~~~~~~l~~~a~~~~l--~~~~~~~~------------------~~~L~~~~~~~p~~~~~~~~l~~~~a~ 271 (409)
T TIGR00540 212 NMAKAGLFDDEEFADLEQKAEIGLL--DEAMADEG------------------IDGLLNWWKNQPRHRRHNIALKIALAE 271 (409)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHH--HHHHHhcC------------------HHHHHHHHHHCCHHHhCCHHHHHHHHH
Confidence 9998754444111100111111111 11111211 223355666666 58899999999
Q ss_pred HHHHhcCHHHHHHHHHHHHhcCCchHHHH--HHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHHHHHhcCCCCCC
Q 002379 649 LLLRLNCQKAAMRCLRLARNHSSSEHERL--VYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPES 726 (929)
Q Consensus 649 ~~~~~g~~~~A~~~l~~al~~~p~~~~~~--~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~l~~~l~~~~~~~~~ 726 (929)
.+...|++++|...++++++..|++.... ..........++.+.+++.++++++..|++
T Consensus 272 ~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~------------------- 332 (409)
T TIGR00540 272 HLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDK------------------- 332 (409)
T ss_pred HHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCC-------------------
Confidence 99999999999999999999999886532 333444455688888999999999888877
Q ss_pred hHHHHHHHHHHhhchhccCchh--HHHHHHHHHHHHcCCHHHHHHHHHH--HHcC-CCHHHHHHHHHHHHHhCCHHHHHH
Q 002379 727 STYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVECGKLDQAENCYIN--ALDI-KHTRAHQGLARVYYLKNELKAAYD 801 (929)
Q Consensus 727 ~~~a~~~~e~Al~~~~~al~~~--~a~~~lg~~~~~~g~~~eA~~~~~~--al~~-~~~~a~~~la~~~~~~g~~~~A~~ 801 (929)
+ .....+|.++...|++++|.++|++ +++. .++..+..+|.++...|+.++|.+
T Consensus 333 ---------------------~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~ 391 (409)
T TIGR00540 333 ---------------------PKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAA 391 (409)
T ss_pred ---------------------hhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 3 4567899999999999999999994 6555 334456799999999999999999
Q ss_pred HHHHHHHH
Q 002379 802 EMTKLLEK 809 (929)
Q Consensus 802 ~~~~al~~ 809 (929)
.+++++..
T Consensus 392 ~~~~~l~~ 399 (409)
T TIGR00540 392 MRQDSLGL 399 (409)
T ss_pred HHHHHHHH
Confidence 99998754
No 71
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.67 E-value=1.4e-15 Score=165.38 Aligned_cols=244 Identities=16% Similarity=0.152 Sum_probs=176.2
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch-HHHHHHHHHHHhcCC
Q 002379 644 FRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNL 722 (929)
Q Consensus 644 ~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~~~~~l~~~l~~~~~ 722 (929)
+..|..+++.|+..+|.-.|+.++..+|.+.++|..||.+....++-..|+..++++++++|++ ++...++..+...+
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg- 367 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEG- 367 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhh-
Confidence 4667777888888888888888888888888888888888888888888888888888888888 77777777777666
Q ss_pred CCCChHHHHHHHHHHhhchhccCch--hHHHHHHH---------HHHHHcCCHHHHHHHHHHHHcC----CCHHHHHHHH
Q 002379 723 DPESSTYVIQLLEEALRCPSDGLRK--GQALNNLG---------SIYVECGKLDQAENCYINALDI----KHTRAHQGLA 787 (929)
Q Consensus 723 ~~~~~~~a~~~~e~Al~~~~~al~~--~~a~~~lg---------~~~~~~g~~~eA~~~~~~al~~----~~~~a~~~la 787 (929)
.-.+|+.++.+-+.. ...+...+ .-......+..-.+.|-.+... .+++++.+||
T Consensus 368 ----------~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LG 437 (579)
T KOG1125|consen 368 ----------LQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLG 437 (579)
T ss_pred ----------hHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhH
Confidence 333333333322110 00000000 0000001122223334333333 4678999999
Q ss_pred HHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHh----hhCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHH
Q 002379 788 RVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS----EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEA 863 (929)
Q Consensus 788 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg----~~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA 863 (929)
.+|...|++++|++.|+.++...|++...|.++| .-.+.++|+..|.+|+++.|....+++++|..++..|.|++|
T Consensus 438 VLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA 517 (579)
T KOG1125|consen 438 VLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEA 517 (579)
T ss_pred HHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHH
Confidence 9999999999999999999999999999999999 346779999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCc-----------hHHHHHHHHHHHcCCHHHHHH
Q 002379 864 VEELSKAIAFKPDL-----------QMLHLRAAFYESIGDLTSAIR 898 (929)
Q Consensus 864 ~~~l~kal~~~p~~-----------~~~~~la~~~~~~g~~~~A~~ 898 (929)
++.|-.||.+.+.. ..|-.+=.++..+++.+-+.+
T Consensus 518 ~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 518 VKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred HHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 99999999876541 123333355666666664433
No 72
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.67 E-value=1.5e-14 Score=150.95 Aligned_cols=201 Identities=17% Similarity=0.144 Sum_probs=168.8
Q ss_pred CChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHHHH
Q 002379 638 GKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYIL 717 (929)
Q Consensus 638 ~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~l~~~l 717 (929)
..+..+..+|..+...|++++|+..++++++.+|.+..++..+|.++...|++++|+..++++++..|++
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---------- 98 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNN---------- 98 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----------
Confidence 3467889999999999999999999999999999999999999999999999999999999999988876
Q ss_pred HhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHHh
Q 002379 718 ADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI----KHTRAHQGLARVYYLK 793 (929)
Q Consensus 718 ~~~~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~----~~~~a~~~la~~~~~~ 793 (929)
..++.++|.++...|++++|+..|++++.. .....+..+|.++...
T Consensus 99 ------------------------------~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 148 (234)
T TIGR02521 99 ------------------------------GDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKA 148 (234)
T ss_pred ------------------------------HHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHc
Confidence 345778889999999999999999999876 2345788888888888
Q ss_pred CCHHHHHHHHHHHHHHccCCHHHHHHHhhhCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 002379 794 NELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAF 873 (929)
Q Consensus 794 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~ 873 (929)
|++++|...+.+++...|+ ++.++..+|.++...|++++|+..+++++..
T Consensus 149 g~~~~A~~~~~~~~~~~~~------------------------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 198 (234)
T TIGR02521 149 GDFDKAEKYLTRALQIDPQ------------------------------RPESLLELAELYYLRGQYKDARAYLERYQQT 198 (234)
T ss_pred CCHHHHHHHHHHHHHhCcC------------------------------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 8888888887777766554 4455667788888889999999999988888
Q ss_pred CCCchHHH-HHHHHHHHcCCHHHHHHHHHHHhccCC
Q 002379 874 KPDLQMLH-LRAAFYESIGDLTSAIRDSQAALCLDP 908 (929)
Q Consensus 874 ~p~~~~~~-~la~~~~~~g~~~~A~~~~~~al~l~P 908 (929)
.|.++..+ .++.++...|+.++|....+.+....|
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 199 YNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLFP 234 (234)
T ss_pred CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence 77665444 568888888999999888887776654
No 73
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.67 E-value=1.6e-13 Score=155.09 Aligned_cols=290 Identities=12% Similarity=0.072 Sum_probs=194.9
Q ss_pred hhHHHHHHhhhh--HHHHHHHHHHhcCCCChHHHHHH-HHHHHHhCCHHHHHHHHHHHhcccCCHhH--HHHHHHHHHHh
Q 002379 487 MYQERSLYNLGR--EKIVDLNYASELDPTLSFPYKYR-AVAKMEEGQIRAAISEIDRIIVFKLSVDC--LELRAWLFIAA 561 (929)
Q Consensus 487 ~~~~~~l~~~~~--~Ai~~~~kal~l~P~~~~a~~~~-a~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~a~~~~~~ 561 (929)
+..|...+..|+ .|.+...++-+..+. +..++.+ +....+.|+++.|...+.++.+..|+... ....+.++...
T Consensus 88 ~~~gl~a~~eGd~~~A~k~l~~~~~~~~~-p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~ 166 (398)
T PRK10747 88 TEQALLKLAEGDYQQVEKLMTRNADHAEQ-PVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLAR 166 (398)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHC
Confidence 445555555455 677666655544333 4444444 56669999999999999999988775543 23558899999
Q ss_pred ccHHHHHHHHHHHHhhcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChH
Q 002379 562 DDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSF 641 (929)
Q Consensus 562 g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~~p~~~~ 641 (929)
|+++.|+..++++.+.+|+++ .++..++
T Consensus 167 g~~~~Al~~l~~~~~~~P~~~------~al~ll~---------------------------------------------- 194 (398)
T PRK10747 167 NENHAARHGVDKLLEVAPRHP------EVLRLAE---------------------------------------------- 194 (398)
T ss_pred CCHHHHHHHHHHHHhcCCCCH------HHHHHHH----------------------------------------------
Confidence 999999999999988888887 4444444
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHH-HHHHHH---HHcCCHHHHHHHHHHHHhhccchHHHHHHHHHH
Q 002379 642 LRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLV-YEGWIL---YDTGHREEALSRAEKSISIERTFEAFFLKAYIL 717 (929)
Q Consensus 642 ~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~-~lg~~~---~~~g~~~eA~~~~~~al~~~p~~~~~~~l~~~l 717 (929)
.+|...|++++|+..+.+..+..+.++.... ..+..+ .......+..+.+.+..+.-|..
T Consensus 195 ------~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~---------- 258 (398)
T PRK10747 195 ------QAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK---------- 258 (398)
T ss_pred ------HHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH----------
Confidence 4445555555556555555554443322211 111111 00000011122222222222211
Q ss_pred HhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCCH
Q 002379 718 ADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIK-HTRAHQGLARVYYLKNEL 796 (929)
Q Consensus 718 ~~~~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~-~~~a~~~la~~~~~~g~~ 796 (929)
..+.+.+...++..+...|+.++|...++++++.. ++......+. ...++.
T Consensus 259 --------------------------~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~~--l~~~~~ 310 (398)
T PRK10747 259 --------------------------TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLVLLIPR--LKTNNP 310 (398)
T ss_pred --------------------------HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCCh
Confidence 01124567788889999999999999999999862 3333333333 345899
Q ss_pred HHHHHHHHHHHHHccCCHHHHHHHh----hhCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 002379 797 KAAYDEMTKLLEKAQYSASAFEKRS----EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIA 872 (929)
Q Consensus 797 ~~A~~~~~~al~~~p~~~~~~~~lg----~~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~ 872 (929)
+++++..++.++.+|+++..+..+| ..+++++|...|+++++..|++ ..+..++.++.+.|+.++|.++|++++.
T Consensus 311 ~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 311 EQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9999999999999999999888888 5689999999999999999965 4467899999999999999999999987
Q ss_pred cC
Q 002379 873 FK 874 (929)
Q Consensus 873 ~~ 874 (929)
+.
T Consensus 390 ~~ 391 (398)
T PRK10747 390 LT 391 (398)
T ss_pred hh
Confidence 64
No 74
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=99.66 E-value=1.5e-16 Score=145.64 Aligned_cols=100 Identities=30% Similarity=0.382 Sum_probs=90.3
Q ss_pred CCCCCEEEEEc-CeEEEeehhHHhccCHHHHHHhcCC-CCcCCCCeeEecCCCCCHHHHHHHhhhHccCCCCCCC-hhHH
Q 002379 215 EEDDSVTFCVR-DKEISFVRNKIASLSSPFKAMLYGG-FVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFC-PGIV 291 (929)
Q Consensus 215 ~~~~~v~~~v~-~~~~~~hr~iLaa~S~~F~~mf~~~-~~e~~~~~i~~~~~~~~~~~~~~~l~~~Yt~~~~~~~-~~~~ 291 (929)
+...||+|.|+ |++|+|||.||+++|+||+.||.++ +.+.....|.+ +++++++|+.+++|+|+|++. ++ .+++
T Consensus 8 ~~~~D~~i~v~d~~~~~vhk~iL~~~S~~F~~~~~~~~~~~~~~~~i~~--~~~~~~~~~~~l~~~Y~~~~~-~~~~~~~ 84 (111)
T PF00651_consen 8 NEFSDVTIRVGDGKTFYVHKNILAARSPYFRNLFEGSKFKESTVPEISL--PDVSPEAFEAFLEYMYTGEIE-INSDENV 84 (111)
T ss_dssp TTS--EEEEETTTEEEEE-HHHHHHHBHHHHHHHTTTTSTTSSEEEEEE--TTSCHHHHHHHHHHHHHSEEE-EE-TTTH
T ss_pred CCCCCEEEEECCCEEEeechhhhhccchhhhhccccccccccccccccc--ccccccccccccccccCCccc-CCHHHHH
Confidence 44455999999 8999999999999999999999998 77777778999 999999999999999999999 87 9999
Q ss_pred HHHHHHhchhChHhHHHHHHHHHHhh
Q 002379 292 LELLSFANRFCCEEMKSACDAHLASL 317 (929)
Q Consensus 292 ~~ll~~A~~~~~~~l~~~C~~~l~~~ 317 (929)
.+++.+|++|+++.|+..|+.+|.+.
T Consensus 85 ~~ll~lA~~~~~~~L~~~~~~~l~~~ 110 (111)
T PF00651_consen 85 EELLELADKLQIPELKKACEKFLQES 110 (111)
T ss_dssp HHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHhC
Confidence 99999999999999999999999764
No 75
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.66 E-value=9.1e-12 Score=131.73 Aligned_cols=444 Identities=12% Similarity=0.016 Sum_probs=292.7
Q ss_pred HHHHhhHHHHhcccHHHHHHHHHHHHhcCccccHHHHHHHHHHhchHHHHHHHHHhhhccCCCchhhhHHHHHHhhhhHH
Q 002379 421 ALHQLGCVMFEREEYKDACYYFEAAADAGHIYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNLGREK 500 (929)
Q Consensus 421 ~~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~~~a~la~~~~~~g~a~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~A 500 (929)
.+...|.--..++++..|...|++|+..+..+.. .+.++.+....-+ .-..|
T Consensus 75 ~WikYaqwEesq~e~~RARSv~ERALdvd~r~it-----LWlkYae~Emknk-----------------------~vNhA 126 (677)
T KOG1915|consen 75 VWIKYAQWEESQKEIQRARSVFERALDVDYRNIT-----LWLKYAEFEMKNK-----------------------QVNHA 126 (677)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHhcccccch-----HHHHHHHHHHhhh-----------------------hHhHH
Confidence 4455666677889999999999999998877665 3333222211111 11256
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccCCHhHHHHHHHHHHHhccHHHHHHHHHHHHhhcCC
Q 002379 501 IVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLALESN 580 (929)
Q Consensus 501 i~~~~kal~l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~ 580 (929)
...+++|+.+-|.-...|+..-..-..+|+...|.+.|++-++..|+..++......-++-+..+.|...|++.+-..|+
T Consensus 127 RNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~ 206 (677)
T KOG1915|consen 127 RNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPK 206 (677)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheeccc
Confidence 66777777777777777777666666777777777777777777777777766666666677777777777777777776
Q ss_pred chhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCC---CChHHHHHHHHHHHHhcCHH
Q 002379 581 YMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDP---GKSFLRFRQSLLLLRLNCQK 657 (929)
Q Consensus 581 ~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~~p---~~~~~~~~lg~~~~~~g~~~ 657 (929)
-..|.. .+.....-|+...| -.+|.++++.-. ....++...+..-.++..++
T Consensus 207 v~~wik-------yarFE~k~g~~~~a------------------R~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~E 261 (677)
T KOG1915|consen 207 VSNWIK-------YARFEEKHGNVALA------------------RSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYE 261 (677)
T ss_pred HHHHHH-------HHHHHHhcCcHHHH------------------HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 654422 11122222222222 222334333322 12334445555566667777
Q ss_pred HHHHHHHHHHhcCCch--HHHHHHHHHHHHHcCCH---HHHH-----HHHHHHHhhccch-HHHHHHHHHHHhcCCCCCC
Q 002379 658 AAMRCLRLARNHSSSE--HERLVYEGWILYDTGHR---EEAL-----SRAEKSISIERTF-EAFFLKAYILADTNLDPES 726 (929)
Q Consensus 658 ~A~~~l~~al~~~p~~--~~~~~~lg~~~~~~g~~---~eA~-----~~~~~al~~~p~~-~~~~~l~~~l~~~~~~~~~ 726 (929)
.|...|+-|+..-|.+ .+.+-.+-..-.+-|+. ++++ -.|++.++.+|-+ ++|+.........| .
T Consensus 262 Rar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g----~ 337 (677)
T KOG1915|consen 262 RARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVG----D 337 (677)
T ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcC----C
Confidence 7777777777777766 23333333333334442 2222 2356666777777 77776665554443 3
Q ss_pred hHHHHHHHHHHhhchhccCchh------HHHHHHHH-HHHHcCCHHHHHHHHHHHHcCC------CHHHHHHHHHHHHHh
Q 002379 727 STYVIQLLEEALRCPSDGLRKG------QALNNLGS-IYVECGKLDQAENCYINALDIK------HTRAHQGLARVYYLK 793 (929)
Q Consensus 727 ~~~a~~~~e~Al~~~~~al~~~------~a~~~lg~-~~~~~g~~~eA~~~~~~al~~~------~~~a~~~la~~~~~~ 793 (929)
.......|++|+....-+..+. -.|.+.+. .-+...+.+.+.+.|+.++++- -...|...|....++
T Consensus 338 ~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq 417 (677)
T KOG1915|consen 338 KDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQ 417 (677)
T ss_pred HHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHH
Confidence 4444445555554332221111 12222221 1245788999999999999982 235788888888899
Q ss_pred CCHHHHHHHHHHHHHHccCCHH--HHHHHh-hhCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 002379 794 NELKAAYDEMTKLLEKAQYSAS--AFEKRS-EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKA 870 (929)
Q Consensus 794 g~~~~A~~~~~~al~~~p~~~~--~~~~lg-~~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~ka 870 (929)
.+...|.+.+-.++...|.+-. .|..+- .+++++.-...|++-++..|.+..+|...|.+-..+|+.+.|...|+-|
T Consensus 418 ~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelA 497 (677)
T KOG1915|consen 418 LNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELA 497 (677)
T ss_pred cccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 9999999999999999998754 344444 6789999999999999999999999999999999999999999999999
Q ss_pred HhcCCC-chHHHHH--HHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHh
Q 002379 871 IAFKPD-LQMLHLR--AAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNRARD 922 (929)
Q Consensus 871 l~~~p~-~~~~~~l--a~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~l~~ 922 (929)
+....- .+.+.+. -.+-...|.+++|...|++.|...+... +|...++.+.
T Consensus 498 i~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k-vWisFA~fe~ 551 (677)
T KOG1915|consen 498 ISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK-VWISFAKFEA 551 (677)
T ss_pred hcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch-HHHhHHHHhc
Confidence 876432 2444433 5556678999999999999999887665 7776666554
No 76
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.65 E-value=1.6e-14 Score=157.08 Aligned_cols=253 Identities=15% Similarity=0.151 Sum_probs=199.0
Q ss_pred hhHHHHHHhhhh--HHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccC-CHhHHHHHHHHHHHhcc
Q 002379 487 MYQERSLYNLGR--EKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADD 563 (929)
Q Consensus 487 ~~~~~~l~~~~~--~Ai~~~~kal~l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~~g~ 563 (929)
+-.|.-++..|. +|+-.|+.|+..+|.++++|..+|.+....++-..|+..+.++++++| +.+++..+|..|...|.
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~ 368 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGL 368 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh
Confidence 345666666776 999999999999999999999999999999999999999999999999 88889999999999999
Q ss_pred HHHHHHHHHHHHhhcCCchhhhcc-ccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCC--CCh
Q 002379 564 YESALRDTLALLALESNYMMFHGR-VSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDP--GKS 640 (929)
Q Consensus 564 ~~~A~~~~~~al~~~p~~~~~~~~-~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~~p--~~~ 640 (929)
-.+|+..+.+-+...|........ ..... ...+.+.....+. +-...|-.+....| .++
T Consensus 369 q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~------~~~~s~~~~~~l~------------~i~~~fLeaa~~~~~~~Dp 430 (579)
T KOG1125|consen 369 QNQALKMLDKWIRNKPKYVHLVSAGENEDF------ENTKSFLDSSHLA------------HIQELFLEAARQLPTKIDP 430 (579)
T ss_pred HHHHHHHHHHHHHhCccchhccccCccccc------cCCcCCCCHHHHH------------HHHHHHHHHHHhCCCCCCh
Confidence 999999999999888776611100 00000 0000000000000 00334456666677 789
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Q 002379 641 FLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADT 720 (929)
Q Consensus 641 ~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~l~~~l~~~ 720 (929)
++...+|.+|...|+|++|+.+|+.|+...|++...|..||-.+....+.++|+..|++|+++.|.+
T Consensus 431 dvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~y------------- 497 (579)
T KOG1125|consen 431 DVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGY------------- 497 (579)
T ss_pred hHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCe-------------
Confidence 9999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCC------------HHHHHHHHH
Q 002379 721 NLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIKH------------TRAHQGLAR 788 (929)
Q Consensus 721 ~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~------------~~a~~~la~ 788 (929)
..+++++|..+...|.|++|+.+|-.|+.+.. ..+|..|=.
T Consensus 498 ---------------------------VR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~ 550 (579)
T KOG1125|consen 498 ---------------------------VRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRL 550 (579)
T ss_pred ---------------------------eeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHH
Confidence 44578888888888999999999999988711 135555555
Q ss_pred HHHHhCCHH
Q 002379 789 VYYLKNELK 797 (929)
Q Consensus 789 ~~~~~g~~~ 797 (929)
++...++.+
T Consensus 551 als~~~~~D 559 (579)
T KOG1125|consen 551 ALSAMNRSD 559 (579)
T ss_pred HHHHcCCch
Confidence 555555554
No 77
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=1.4e-13 Score=143.59 Aligned_cols=375 Identities=14% Similarity=0.077 Sum_probs=259.4
Q ss_pred chHHHHHHHHHHHhhHHHHhcccHHHHHHHHHHHHhcCccccHHHHHHHHHHhchHHHHHHHHHhhhccCCCchhhhHHH
Q 002379 412 STERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGHIYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQER 491 (929)
Q Consensus 412 ~~~~~~~a~~~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~~~a~la~~~~~~g~a~~a~~~~~~~~~~~~~~~~~~~~~ 491 (929)
..+..+.+.-....|+.+++..+|.+|+..|..|++..|++.. .|.++......+.
T Consensus 42 ~~~~~~~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~-----yy~nRAa~~m~~~------------------- 97 (486)
T KOG0550|consen 42 SQEAAQQAEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNAS-----YYSNRAATLMMLG------------------- 97 (486)
T ss_pred cchHHHHHHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccchh-----hhchhHHHHHHHH-------------------
Confidence 3445566777788999999999999999999999999888754 3333332222222
Q ss_pred HHHhhhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccCCHhHHHHHHHHHHHhccHHHHHHHH
Q 002379 492 SLYNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDT 571 (929)
Q Consensus 492 ~l~~~~~~Ai~~~~kal~l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~g~~~~A~~~~ 571 (929)
..++|....++.++++|.....+...+.++...++..+|...++.. ..+ ....|+..+
T Consensus 98 ----~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~~~~~~~-------~~~-----------~~anal~~~ 155 (486)
T KOG0550|consen 98 ----RFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEAEEKLKSK-------QAY-----------KAANALPTL 155 (486)
T ss_pred ----hHhhcccchhhheecCCCccccccchhhhhhhhHHHHHHHHHhhhh-------hhh-----------HHhhhhhhh
Confidence 4446677777788888888888888888888777777776666511 000 122333344
Q ss_pred HHHHhhcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHHH
Q 002379 572 LALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLL 651 (929)
Q Consensus 572 ~~al~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~lg~~~~ 651 (929)
++.+..+...+. . ..+..+-+.++...++++.|.... ...+++++.+..+++..|.+++
T Consensus 156 ~~~~~s~s~~pa-c--~~a~~lka~cl~~~~~~~~a~~ea------------------~~ilkld~~n~~al~vrg~~~y 214 (486)
T KOG0550|consen 156 EKLAPSHSREPA-C--FKAKLLKAECLAFLGDYDEAQSEA------------------IDILKLDATNAEALYVRGLCLY 214 (486)
T ss_pred hcccccccCCch-h--hHHHHhhhhhhhhcccchhHHHHH------------------HHHHhcccchhHHHHhcccccc
Confidence 443333222220 0 134455666777778888874443 7888999999999999999999
Q ss_pred HhcCHHHHHHHHHHHHhcCCchH------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch-HHHHHHHHHHH
Q 002379 652 RLNCQKAAMRCLRLARNHSSSEH------------ERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILA 718 (929)
Q Consensus 652 ~~g~~~~A~~~l~~al~~~p~~~------------~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~~~~~l~~~l~ 718 (929)
..++.+.|+..|+++++++|+.. ..+...|.-.++.|++.+|.+.|..+|.++|++ ..
T Consensus 215 y~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~--------- 285 (486)
T KOG0550|consen 215 YNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKT--------- 285 (486)
T ss_pred cccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccch---------
Confidence 99999999999999999999863 345667999999999999999999999999987 10
Q ss_pred hcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCH--HHHHHHHHHHHHhCCH
Q 002379 719 DTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIKHT--RAHQGLARVYYLKNEL 796 (929)
Q Consensus 719 ~~~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~~--~a~~~la~~~~~~g~~ 796 (929)
....|.+++.+....|+..+|+...+.++++++. .++...|.++..++++
T Consensus 286 ----------------------------naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~ 337 (486)
T KOG0550|consen 286 ----------------------------NAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKW 337 (486)
T ss_pred ----------------------------hHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHH
Confidence 0345889999999999999999999999999654 6888999999999999
Q ss_pred HHHHHHHHHHHHHccCCHHHHHHHhhhCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 002379 797 KAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPD 876 (929)
Q Consensus 797 ~~A~~~~~~al~~~p~~~~~~~~lg~~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~ 876 (929)
++|.+.|+++++...+ ......+ .+|...++++- ..+-|..+|....... -+.-..+=..+|...|+
T Consensus 338 e~AV~d~~~a~q~~~s-~e~r~~l------~~A~~aLkkSk-----Rkd~ykilGi~~~as~-~eikkayrk~AL~~Hpd 404 (486)
T KOG0550|consen 338 EEAVEDYEKAMQLEKD-CEIRRTL------REAQLALKKSK-----RKDWYKILGISRNASD-DEIKKAYRKLALVHHPD 404 (486)
T ss_pred HHHHHHHHHHHhhccc-cchHHHH------HHHHHHHHHhh-----hhhHHHHhhhhhhccc-chhhhHHHHHHHHhCCC
Confidence 9999999999987655 2222222 22333333322 1223334454333222 11222222345666665
Q ss_pred ch-------H--HHHHHHHHHHcCCHHHHHHHHHHH
Q 002379 877 LQ-------M--LHLRAAFYESIGDLTSAIRDSQAA 903 (929)
Q Consensus 877 ~~-------~--~~~la~~~~~~g~~~~A~~~~~~a 903 (929)
-. . +...|..|...+++.++.++..-.
T Consensus 405 ~~agsq~eaE~kFkevgeAy~il~d~~kr~r~dsg~ 440 (486)
T KOG0550|consen 405 KNAGSQKEAEAKFKEVGEAYTILSDPMKRVRFDSGQ 440 (486)
T ss_pred cCcchhHHHHHHHHHHHHHHHHhcCHHHHhhccccc
Confidence 42 1 114588888899998888776544
No 78
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.64 E-value=5e-13 Score=146.89 Aligned_cols=375 Identities=16% Similarity=0.094 Sum_probs=268.9
Q ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHhcccC-CHhHHHHHHHHHHHhccHHHHHHHHHHHHhhcCCchhhhccccHHHH
Q 002379 515 SFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHL 593 (929)
Q Consensus 515 ~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~l 593 (929)
..+++.++.-.++.++|...++..+.+++..| .++.+...|..+..+|+-++|....+.++..++... -.++.
T Consensus 7 E~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~------vCwHv 80 (700)
T KOG1156|consen 7 ENALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSH------VCWHV 80 (700)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccc------hhHHH
Confidence 45678888888899999999999999998777 888899999999999999999999999999888888 88899
Q ss_pred HHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCch
Q 002379 594 VKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE 673 (929)
Q Consensus 594 l~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~ 673 (929)
+|+++.....|++| +.+|..|+..+|+|..+|..++.+..++++++.....-.+.++..|..
T Consensus 81 ~gl~~R~dK~Y~ea------------------iKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ 142 (700)
T KOG1156|consen 81 LGLLQRSDKKYDEA------------------IKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQ 142 (700)
T ss_pred HHHHHhhhhhHHHH------------------HHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhh
Confidence 99999999999999 455599999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc---cch-HHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhcc----C
Q 002379 674 HERLVYEGWILYDTGHREEALSRAEKSISIE---RTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDG----L 745 (929)
Q Consensus 674 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~---p~~-~~~~~l~~~l~~~~~~~~~~~~a~~~~e~Al~~~~~a----l 745 (929)
...|...+..+.-.|++..|....+...+.. |+. ..-......+...-. .-.+.+++|++...+. .
T Consensus 143 ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~------~E~g~~q~ale~L~~~e~~i~ 216 (700)
T KOG1156|consen 143 RASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQIL------IEAGSLQKALEHLLDNEKQIV 216 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHH------HHcccHHHHHHHHHhhhhHHH
Confidence 9999999999999999999999888777655 444 222222222222210 0011234444433332 1
Q ss_pred chhHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCH--HHHHHHHHHHHHhCCHHHHH-HHHHHHHHHccCCHH-------
Q 002379 746 RKGQALNNLGSIYVECGKLDQAENCYINALDIKHT--RAHQGLARVYYLKNELKAAY-DEMTKLLEKAQYSAS------- 815 (929)
Q Consensus 746 ~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~~--~a~~~la~~~~~~g~~~~A~-~~~~~al~~~p~~~~------- 815 (929)
+.-......|.++...+++++|...|...+..+|. ..+.++-.++..-.+--++. ..|...-+..|...-
T Consensus 217 Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlpls 296 (700)
T KOG1156|consen 217 DKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLS 296 (700)
T ss_pred HHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHH
Confidence 22345566788888999999999999988888544 34444445554222223333 444444443332210
Q ss_pred ------------HHHH----Hh----------hhCCHH------HHHHHHHHHHhcC------------CCCc--HHHHH
Q 002379 816 ------------AFEK----RS----------EYSDRE------MAKNDLNMATQLD------------PLRT--YPYRY 849 (929)
Q Consensus 816 ------------~~~~----lg----------~~g~~~------~A~~~~~~al~l~------------p~~~--~~~~~ 849 (929)
-|.. .| .+.+.. +-+..|...+.-. |-.+ ..++.
T Consensus 297 vl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~ 376 (700)
T KOG1156|consen 297 VLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYF 376 (700)
T ss_pred HhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHH
Confidence 0111 11 112211 1112222222211 2122 23456
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCchHHH-HHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHH
Q 002379 850 RAAVLMDDQKEVEAVEELSKAIAFKPDLQMLH-LRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNR 919 (929)
Q Consensus 850 la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~-~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~ 919 (929)
++.-+-..|+++.|..++..|+...|+....+ ..|.++.+.|+.++|...++.+.++|-.+.......++
T Consensus 377 laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAK 447 (700)
T KOG1156|consen 377 LAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAK 447 (700)
T ss_pred HHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHH
Confidence 88888899999999999999999999998888 55999999999999999999999998776655433333
No 79
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.63 E-value=7.1e-14 Score=145.81 Aligned_cols=186 Identities=16% Similarity=0.112 Sum_probs=156.7
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHH
Q 002379 673 EHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALN 752 (929)
Q Consensus 673 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~l~~~l~~~~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~ 752 (929)
.+..+..+|.++...|++++|+..++++++.+|++ ..++.
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~----------------------------------------~~~~~ 69 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDD----------------------------------------YLAYL 69 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc----------------------------------------HHHHH
Confidence 36788889999999999999999999999888866 34577
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHhhhCCHHHHH
Q 002379 753 NLGSIYVECGKLDQAENCYINALDI--KHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAK 830 (929)
Q Consensus 753 ~lg~~~~~~g~~~eA~~~~~~al~~--~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~g~~~~A~ 830 (929)
.+|.++...|++++|+..|+++++. .+..++..+|.++...|++++|...+.+++...+
T Consensus 70 ~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~------------------- 130 (234)
T TIGR02521 70 ALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPL------------------- 130 (234)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccc-------------------
Confidence 7888889999999999999999887 4567888889999999999888888888775321
Q ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHH-HHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 002379 831 NDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLH-LRAAFYESIGDLTSAIRDSQAALCLDPN 909 (929)
Q Consensus 831 ~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~-~la~~~~~~g~~~~A~~~~~~al~l~P~ 909 (929)
.+.....+..+|.++...|++++|+..+.++++..|++...+ .+|.++...|++++|...+++++...|.
T Consensus 131 ---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 201 (234)
T TIGR02521 131 ---------YPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQ 201 (234)
T ss_pred ---------cccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 133456678899999999999999999999999999886544 7799999999999999999999999999
Q ss_pred CHHHHHHHHHHHhhhhh
Q 002379 910 HMETLDLYNRARDQASH 926 (929)
Q Consensus 910 ~~~a~~~~~~l~~~~~~ 926 (929)
++..+....++.....+
T Consensus 202 ~~~~~~~~~~~~~~~~~ 218 (234)
T TIGR02521 202 TAESLWLGIRIARALGD 218 (234)
T ss_pred CHHHHHHHHHHHHHHhh
Confidence 99888877777655443
No 80
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.63 E-value=5.3e-12 Score=138.95 Aligned_cols=428 Identities=13% Similarity=0.062 Sum_probs=265.5
Q ss_pred HHHHHhhHHHHhcccHHHHHHHHHHHHhcCccccHHHHHHHHHHhchHHHHHHHHHhhhccCCCchhhhHHHHHHhhhh-
Q 002379 420 LALHQLGCVMFEREEYKDACYYFEAAADAGHIYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNLGR- 498 (929)
Q Consensus 420 ~~~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~~~a~la~~~~~~g~a~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~- 498 (929)
.++|....-.++.++|.+.++..+..++..|.... .....|..+.+.|+
T Consensus 8 ~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHge------------------------------slAmkGL~L~~lg~~ 57 (700)
T KOG1156|consen 8 NALFRRALKCYETKQYKKGLKLIKQILKKFPEHGE------------------------------SLAMKGLTLNCLGKK 57 (700)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccch------------------------------hHHhccchhhcccch
Confidence 45666777778888888888888888887666543 33344555555665
Q ss_pred -HHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccC-CHhHHHHHHHHHHHhccHHHHHHHHHHHHh
Q 002379 499 -EKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLALLA 576 (929)
Q Consensus 499 -~Ai~~~~kal~l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~~g~~~~A~~~~~~al~ 576 (929)
+|......++..|+.....|.-+|.++...++|++|+++|..|+.+.+ +...+..++.+..++++++.....-.+.++
T Consensus 58 ~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLq 137 (700)
T KOG1156|consen 58 EEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQ 137 (700)
T ss_pred HHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 888888999999999999999999999999999999999999999888 777788999999999999999999999999
Q ss_pred hcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCC-----ChHHHHHHHHHHH
Q 002379 577 LESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPG-----KSFLRFRQSLLLL 651 (929)
Q Consensus 577 ~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~~p~-----~~~~~~~lg~~~~ 651 (929)
..|.+. ..+.-.+..+.-.|.+..|...++.+ .+.....|. ..........+..
T Consensus 138 l~~~~r------a~w~~~Avs~~L~g~y~~A~~il~ef---------------~~t~~~~~s~~~~e~se~~Ly~n~i~~ 196 (700)
T KOG1156|consen 138 LRPSQR------ASWIGFAVAQHLLGEYKMALEILEEF---------------EKTQNTSPSKEDYEHSELLLYQNQILI 196 (700)
T ss_pred hhhhhH------HHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHhhccCCCHHHHHHHHHHHHHHHHHH
Confidence 999988 33444666666777777776655222 222222222 2344556667777
Q ss_pred HhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch-HHHHHHHHHHHhcCCCCCChHHH
Q 002379 652 RLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYV 730 (929)
Q Consensus 652 ~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~~~~~l~~~l~~~~~~~~~~~~a 730 (929)
..|.+++|.+.+..--..--+........|.++++++++++|...|...+..+|++ ..+..+-.++.... ......
T Consensus 197 E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~---d~~~~l 273 (700)
T KOG1156|consen 197 EAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIK---DMLEAL 273 (700)
T ss_pred HcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHh---hhHHHH
Confidence 88888888877766443333334455667999999999999999999999999999 66666666665111 011111
Q ss_pred HHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHH-HHHHHHcCCCHHHHHHHHHHHHHhCCH---HHHHHHHHHH
Q 002379 731 IQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAEN-CYINALDIKHTRAHQGLARVYYLKNEL---KAAYDEMTKL 806 (929)
Q Consensus 731 ~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~-~~~~al~~~~~~a~~~la~~~~~~g~~---~~A~~~~~~a 806 (929)
...|...-+.|.+.. ....++.....-.++.+... ++...++.+-+.....+-..|..-... ++-+..|...
T Consensus 274 k~ly~~ls~~y~r~e----~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~ 349 (700)
T KOG1156|consen 274 KALYAILSEKYPRHE----CPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHS 349 (700)
T ss_pred HHHHHHHhhcCcccc----cchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhh
Confidence 122333333222221 11112221121222222222 222222222222222222222111100 0001111111
Q ss_pred HHH------------ccCCHHHH--HHHh----hhCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHH
Q 002379 807 LEK------------AQYSASAF--EKRS----EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELS 868 (929)
Q Consensus 807 l~~------------~p~~~~~~--~~lg----~~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~ 868 (929)
+.- .|..+-+| +.++ ..|+++.|..+++.|+...|+.++.+...|.++...|++++|...+.
T Consensus 350 L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ 429 (700)
T KOG1156|consen 350 LSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLD 429 (700)
T ss_pred cccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 110 12222222 2222 45777777777777777777777777777777777777777777777
Q ss_pred HHHhcCCCchHHH-HHHHHHHHcCCHHHHHHHHHHHhc
Q 002379 869 KAIAFKPDLQMLH-LRAAFYESIGDLTSAIRDSQAALC 905 (929)
Q Consensus 869 kal~~~p~~~~~~-~la~~~~~~g~~~~A~~~~~~al~ 905 (929)
.+.+++-.+..+. --|....+.++.++|.+.+.+.-.
T Consensus 430 ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr 467 (700)
T KOG1156|consen 430 EAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTR 467 (700)
T ss_pred HHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhh
Confidence 7777765555444 236666666777777666655433
No 81
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.62 E-value=2.6e-12 Score=130.28 Aligned_cols=259 Identities=14% Similarity=0.046 Sum_probs=216.0
Q ss_pred hhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccCC-----HhHHHHHHHHHHHhccHHHHHHH
Q 002379 496 LGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-----VDCLELRAWLFIAADDYESALRD 570 (929)
Q Consensus 496 ~~~~Ai~~~~kal~l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~~-----~~~~~~~a~~~~~~g~~~~A~~~ 570 (929)
..++|+..|-..++.+|...++.+.+|..+...|..+.|+..-+..++.... .-+...+|.-|+..|-++.|...
T Consensus 50 Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~ 129 (389)
T COG2956 50 QPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDI 129 (389)
T ss_pred CcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 4449999999999999999999999999999999999999998887743331 22377889999999999999999
Q ss_pred HHHHHhhcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCC-----hHHHHH
Q 002379 571 TLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGK-----SFLRFR 645 (929)
Q Consensus 571 ~~~al~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~~p~~-----~~~~~~ 645 (929)
|....+...--. .++..+-.+|.....|++|+... ++.....+.. +..|..
T Consensus 130 f~~L~de~efa~------~AlqqLl~IYQ~treW~KAId~A------------------~~L~k~~~q~~~~eIAqfyCE 185 (389)
T COG2956 130 FNQLVDEGEFAE------GALQQLLNIYQATREWEKAIDVA------------------ERLVKLGGQTYRVEIAQFYCE 185 (389)
T ss_pred HHHHhcchhhhH------HHHHHHHHHHHHhhHHHHHHHHH------------------HHHHHcCCccchhHHHHHHHH
Confidence 999886544344 67888999999999999995555 7777776654 456778
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHHHHHhcCCCCC
Q 002379 646 QSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPE 725 (929)
Q Consensus 646 lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~l~~~l~~~~~~~~ 725 (929)
++..+....+.+.|+..+.+|++.+|+...+-..+|.++...|+|+.|++.++.+++.+|++-
T Consensus 186 LAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl----------------- 248 (389)
T COG2956 186 LAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYL----------------- 248 (389)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHH-----------------
Confidence 888889999999999999999999999999999999999999999999999999999999770
Q ss_pred ChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHhCCHHHHHHHHH
Q 002379 726 SSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI-KHTRAHQGLARVYYLKNELKAAYDEMT 804 (929)
Q Consensus 726 ~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~-~~~~a~~~la~~~~~~g~~~~A~~~~~ 804 (929)
+.+...|..+|...|+.++.+..+.++.+. ..+.+...++..-....-.++|...+.
T Consensus 249 ----------------------~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~ 306 (389)
T COG2956 249 ----------------------SEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLT 306 (389)
T ss_pred ----------------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHH
Confidence 234556778888899999999999999888 455666777777666777788888888
Q ss_pred HHHHHccCCHHHH
Q 002379 805 KLLEKAQYSASAF 817 (929)
Q Consensus 805 ~al~~~p~~~~~~ 817 (929)
+-+...|.-...+
T Consensus 307 ~Ql~r~Pt~~gf~ 319 (389)
T COG2956 307 RQLRRKPTMRGFH 319 (389)
T ss_pred HHHhhCCcHHHHH
Confidence 8888887654443
No 82
>PLN02789 farnesyltranstransferase
Probab=99.61 E-value=1.6e-13 Score=147.95 Aligned_cols=241 Identities=13% Similarity=-0.015 Sum_probs=193.9
Q ss_pred CChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhccchHHHHHHHHH
Q 002379 638 GKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTG-HREEALSRAEKSISIERTFEAFFLKAYI 716 (929)
Q Consensus 638 ~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g-~~~eA~~~~~~al~~~p~~~~~~~l~~~ 716 (929)
+...++-.+-.++...+++++|+..+.++++++|++..+|...|.++..+| ++++++..++++++.+|++
T Consensus 35 ~~~~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npkn--------- 105 (320)
T PLN02789 35 EFREAMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKN--------- 105 (320)
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcc---------
Confidence 334455455556777889999999999999999999999999999999998 6899999999999999988
Q ss_pred HHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCC--HHHHHHHHHHHHcC--CCHHHHHHHHHHHHH
Q 002379 717 LADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGK--LDQAENCYINALDI--KHTRAHQGLARVYYL 792 (929)
Q Consensus 717 l~~~~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~--~~eA~~~~~~al~~--~~~~a~~~la~~~~~ 792 (929)
..+|+..+.++...|+ +++++.+++++++. ++..+|...+.++..
T Consensus 106 -------------------------------yqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~ 154 (320)
T PLN02789 106 -------------------------------YQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRT 154 (320)
T ss_pred -------------------------------hHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 3335555555555554 36788889999988 456799999999999
Q ss_pred hCCHHHHHHHHHHHHHHccCCHHHHHHHh----hh---CCH----HHHHHHHHHHHhcCCCCcHHHHHHHHHHHh----c
Q 002379 793 KNELKAAYDEMTKLLEKAQYSASAFEKRS----EY---SDR----EMAKNDLNMATQLDPLRTYPYRYRAAVLMD----D 857 (929)
Q Consensus 793 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg----~~---g~~----~~A~~~~~~al~l~p~~~~~~~~la~~~~~----~ 857 (929)
.|++++|++.+.++++.+|.+..+|..++ .. |.. ++++.+..+++..+|.+..+|.+++.++.. .
T Consensus 155 l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l 234 (320)
T PLN02789 155 LGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEAL 234 (320)
T ss_pred hhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCccc
Confidence 99999999999999999999999999988 22 223 578888889999999999999999999988 4
Q ss_pred CCHHHHHHHHHHHHhcCCCchHHH-HHHHHHHHcC------------------CHHHHHHHHHHHhccCCCCHHHHHHHH
Q 002379 858 QKEVEAVEELSKAIAFKPDLQMLH-LRAAFYESIG------------------DLTSAIRDSQAALCLDPNHMETLDLYN 918 (929)
Q Consensus 858 g~~~eA~~~l~kal~~~p~~~~~~-~la~~~~~~g------------------~~~~A~~~~~~al~l~P~~~~a~~~~~ 918 (929)
++..+|++.+.+++..+|++..+. .++.+|.... ..++|.+.|+..-+.||=-...|..+.
T Consensus 235 ~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~~~d~ir~~yw~~~~ 314 (320)
T PLN02789 235 VSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELEVADPMRRNYWAWRK 314 (320)
T ss_pred ccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHHhhCcHHHHHHHHHH
Confidence 567789999999999888876555 6788887532 346788888888777776555555443
No 83
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.61 E-value=6.5e-13 Score=148.92 Aligned_cols=314 Identities=14% Similarity=0.010 Sum_probs=219.2
Q ss_pred CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccC----CHhHHHHHHHHHHHhccHHHHHHHHHHHHhhcCCchhhhc
Q 002379 511 DPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL----SVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHG 586 (929)
Q Consensus 511 ~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~----~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 586 (929)
||+.+.+|..+|..+...|+.+.|...+.++....+ ..+....++..+...|++++|...++++++.+|++.
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~---- 77 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDL---- 77 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH----
Confidence 899999999999999999999999999998886666 234567788999999999999999999999999998
Q ss_pred cccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 002379 587 RVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLA 666 (929)
Q Consensus 587 ~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~a 666 (929)
.++.. +..+...+.+..+.... ...+......+|.....+..+|.++..+|++++|+..++++
T Consensus 78 --~a~~~-~~~~~~~~~~~~~~~~~--------------~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~a 140 (355)
T cd05804 78 --LALKL-HLGAFGLGDFSGMRDHV--------------ARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRA 140 (355)
T ss_pred --HHHHH-hHHHHHhcccccCchhH--------------HHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33332 33333333332221111 11112233456777778888999999999999999999999
Q ss_pred HhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch-HHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccC
Q 002379 667 RNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGL 745 (929)
Q Consensus 667 l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~~~~~l~~~l~~~~~~~~~~~~a~~~~e~Al~~~~~al 745 (929)
++.+|+++..+..+|.++...|++++|+..+++++...|.. ..
T Consensus 141 l~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~------------------------------------ 184 (355)
T cd05804 141 LELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSML------------------------------------ 184 (355)
T ss_pred HhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcch------------------------------------
Confidence 99999999999999999999999999999999999877643 00
Q ss_pred chhHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCC-HHHHH------HHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHH
Q 002379 746 RKGQALNNLGSIYVECGKLDQAENCYINALDIKH-TRAHQ------GLARVYYLKNELKAAYDEMTKLLEKAQYSASAFE 818 (929)
Q Consensus 746 ~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~-~~a~~------~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 818 (929)
....+..+|.++...|++++|+..|++++...+ ..... .+...+...|....+.. ++.+...
T Consensus 185 -~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~-w~~~~~~--------- 253 (355)
T cd05804 185 -RGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDR-WEDLADY--------- 253 (355)
T ss_pred -hHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHH-HHHHHHH---------
Confidence 012366788999999999999999999876533 11111 11111222222111111 1111111
Q ss_pred HHhhhCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---ch------H-HHHHHHHHH
Q 002379 819 KRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPD---LQ------M-LHLRAAFYE 888 (929)
Q Consensus 819 ~lg~~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~---~~------~-~~~la~~~~ 888 (929)
...... .+.........+.++...|+.++|...++......-. .. . ....|.++.
T Consensus 254 --------------~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~ 318 (355)
T cd05804 254 --------------AAWHFP-DHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAF 318 (355)
T ss_pred --------------HHhhcC-cccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHH
Confidence 000000 0112233346778888999999999999887654322 11 1 125599999
Q ss_pred HcCCHHHHHHHHHHHhccC
Q 002379 889 SIGDLTSAIRDSQAALCLD 907 (929)
Q Consensus 889 ~~g~~~~A~~~~~~al~l~ 907 (929)
..|++++|++.+..++.+-
T Consensus 319 ~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 319 AEGNYATALELLGPVRDDL 337 (355)
T ss_pred HcCCHHHHHHHHHHHHHHH
Confidence 9999999999999998764
No 84
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.60 E-value=2.4e-13 Score=132.21 Aligned_cols=204 Identities=15% Similarity=0.086 Sum_probs=158.2
Q ss_pred hHHHHHHHHHHHhccHHHHHHHHHHHHhhcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHH
Q 002379 549 DCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAV 628 (929)
Q Consensus 549 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~ 628 (929)
.....+|.-|+..|++..|...++++++.+|++. .++..++.+|...|..+.|.+.+
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~------~a~~~~A~~Yq~~Ge~~~A~e~Y----------------- 92 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHDPSYY------LAHLVRAHYYQKLGENDLADESY----------------- 92 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH------HHHHHHHHHHHHcCChhhHHHHH-----------------
Confidence 3456677888888888888888888888888888 77777888888888877775555
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccc
Q 002379 629 INQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNH--SSSEHERLVYEGWILYDTGHREEALSRAEKSISIERT 706 (929)
Q Consensus 629 ~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~--~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~ 706 (929)
++++.++|++.+++.+.|..+..+|++++|...|++|+.. .+..+..+.++|.|.++.|+++.|..+|+++++++|+
T Consensus 93 -rkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~ 171 (250)
T COG3063 93 -RKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ 171 (250)
T ss_pred -HHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC
Confidence 7888888888888888888888888888888888888864 4556778888888888888888888888888888887
Q ss_pred hHHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcCC--CHHHHH
Q 002379 707 FEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQ 784 (929)
Q Consensus 707 ~~~~~~l~~~l~~~~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~--~~~a~~ 784 (929)
+ +.+...++...+..|+|..|...+++..... ..+.+.
T Consensus 172 ~----------------------------------------~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~ 211 (250)
T COG3063 172 F----------------------------------------PPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLL 211 (250)
T ss_pred C----------------------------------------ChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHH
Confidence 7 3445667777788888888888888777662 334555
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHccCCHHH
Q 002379 785 GLARVYYLKNELKAAYDEMTKLLEKAQYSASA 816 (929)
Q Consensus 785 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 816 (929)
...++-...|+.+.|..+=.++....|.....
T Consensus 212 L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~ 243 (250)
T COG3063 212 LGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEY 243 (250)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCCcHHH
Confidence 55566677888888887777777777776543
No 85
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=99.60 E-value=2.6e-15 Score=131.41 Aligned_cols=89 Identities=33% Similarity=0.432 Sum_probs=85.2
Q ss_pred EEEEEcCeEEEeehhHHhccCHHHHHHhcCCCCcCCCCeeEecCCCCCHHHHHHHhhhHccCCCCCCChhHHHHHHHHhc
Q 002379 220 VTFCVRDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFCPGIVLELLSFAN 299 (929)
Q Consensus 220 v~~~v~~~~~~~hr~iLaa~S~~F~~mf~~~~~e~~~~~i~~~~~~~~~~~~~~~l~~~Yt~~~~~~~~~~~~~ll~~A~ 299 (929)
|++.|+|++|++||.+|+++|+||++||.+++.++....|.+ +++++.+|+.+++|+||+++. ++.+++.+++.+|+
T Consensus 2 v~i~v~~~~~~~h~~iL~~~s~~f~~~~~~~~~~~~~~~i~l--~~~~~~~f~~~l~~ly~~~~~-~~~~~~~~l~~~a~ 78 (90)
T smart00225 2 VTLVVGGKKFKAHKAVLAACSPYFKALFSGDFKESKKSEIYL--DDVSPEDFRALLEFLYTGKLD-LPEENVEELLELAD 78 (90)
T ss_pred eEEEECCEEEehHHHHHhhcCHHHHHHHcCCCccCCCCEEEe--cCCCHHHHHHHHHeecCceee-cCHHHHHHHHHHHH
Confidence 789999999999999999999999999999999888889999 899999999999999999999 88889999999999
Q ss_pred hhChHhHHHHHH
Q 002379 300 RFCCEEMKSACD 311 (929)
Q Consensus 300 ~~~~~~l~~~C~ 311 (929)
+|+++.|++.|+
T Consensus 79 ~~~~~~l~~~c~ 90 (90)
T smart00225 79 YLQIPGLVELCE 90 (90)
T ss_pred HHCcHHHHhhhC
Confidence 999999999994
No 86
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.59 E-value=5.7e-13 Score=149.62 Aligned_cols=257 Identities=18% Similarity=0.159 Sum_probs=200.0
Q ss_pred cCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcc--------cCC-HhHHHHHHHHHHHhccHHHHHHHHHHHHhhcCC
Q 002379 510 LDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVF--------KLS-VDCLELRAWLFIAADDYESALRDTLALLALESN 580 (929)
Q Consensus 510 l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~--------~~~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~ 580 (929)
.+|.-..+..++|..|..+|+|+.|+..++++++. .+. ......+|.+|..++++.+|+..|++++++...
T Consensus 194 ~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~ 273 (508)
T KOG1840|consen 194 EDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREE 273 (508)
T ss_pred CCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 45777777888999999999999999999999977 221 122445889999999999999999999876321
Q ss_pred chhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHH
Q 002379 581 YMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAM 660 (929)
Q Consensus 581 ~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 660 (929)
.. | ..+|.-+.++.++|.+|...|++++|.
T Consensus 274 ~~-------------------G-------------------------------~~h~~va~~l~nLa~ly~~~GKf~EA~ 303 (508)
T KOG1840|consen 274 VF-------------------G-------------------------------EDHPAVAATLNNLAVLYYKQGKFAEAE 303 (508)
T ss_pred hc-------------------C-------------------------------CCCHHHHHHHHHHHHHHhccCChHHHH
Confidence 11 0 113444567889999999999999999
Q ss_pred HHHHHHHhcC--------CchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHHHHHhcCCCCCChHHHHH
Q 002379 661 RCLRLARNHS--------SSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQ 732 (929)
Q Consensus 661 ~~l~~al~~~--------p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~l~~~l~~~~~~~~~~~~a~~ 732 (929)
.++++|+++. |.-+..+..++.++...+++++|..++++++++.-+.
T Consensus 304 ~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~------------------------- 358 (508)
T KOG1840|consen 304 EYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA------------------------- 358 (508)
T ss_pred HHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh-------------------------
Confidence 9999998753 3335567888999999999999999999998754311
Q ss_pred HHHHHhhchhcc-CchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcCC-------C---HHHHHHHHHHHHHhCCHHHHHH
Q 002379 733 LLEEALRCPSDG-LRKGQALNNLGSIYVECGKLDQAENCYINALDIK-------H---TRAHQGLARVYYLKNELKAAYD 801 (929)
Q Consensus 733 ~~e~Al~~~~~a-l~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~-------~---~~a~~~la~~~~~~g~~~~A~~ 801 (929)
. ... ..-+..+.++|.+|..+|++++|.+.|++|+++. + ...+..+|..|.+.+++.+|..
T Consensus 359 -----~---g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~ 430 (508)
T KOG1840|consen 359 -----P---GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQ 430 (508)
T ss_pred -----c---cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHH
Confidence 0 000 0114568999999999999999999999999881 1 2478889999999999999999
Q ss_pred HHHHHHHHccCCHHHHHHHhhhCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 002379 802 EMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIA 872 (929)
Q Consensus 802 ~~~~al~~~p~~~~~~~~lg~~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~ 872 (929)
.|.+++.+.+ ..-.-.|+....+.+||.+|..+|++++|+++.++++.
T Consensus 431 l~~~~~~i~~-----------------------~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 431 LFEEAKDIMK-----------------------LCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHHHHH-----------------------HhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 9988876631 11122456778899999999999999999999999884
No 87
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.59 E-value=1.2e-15 Score=169.29 Aligned_cols=133 Identities=20% Similarity=0.295 Sum_probs=118.2
Q ss_pred cCeEEEeehhHHhccCHHHHHHhcCCCCcCCCCeeEecCCCCCHHHHHHHhhhHc-cCCCCC----CChhHHHHHHHHhc
Q 002379 225 RDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTR-TSRVDL----FCPGIVLELLSFAN 299 (929)
Q Consensus 225 ~~~~~~~hr~iLaa~S~~F~~mf~~~~~e~~~~~i~~~~~~~~~~~~~~~l~~~Y-t~~~~~----~~~~~~~~ll~~A~ 299 (929)
+|+.|+|||++|++|++||..||..-|.|+..-.+.. ..+..+.|+.+|+|+| +++... -..+.+.++|..||
T Consensus 719 DGkvl~aHkc~L~aRlEYF~smf~~~w~E~sS~t~~~--~p~~~e~m~ivLdylYs~d~~~~~k~~~~~dF~~~il~iaD 796 (1267)
T KOG0783|consen 719 DGKVLKAHKCFLSARLEYFSSMFQFVWMESSSITVNL--SPLTVEHMSIVLDYLYSDDKVELFKDLKESDFMFEILSIAD 796 (1267)
T ss_pred CCcCcccceeEeeeHHHHHHHHHHHHHhhhccceeec--CcchHHHHHHHHHHHHccchHHHHhccchhhhhHHHHHHHH
Confidence 8899999999999999999999999999998755555 5666999999999999 555442 34467889999999
Q ss_pred hhChHhHHHHHHHHHHhhcCChhhHHHHHHHHHHhChHHHHHHHHHHHHhchhhhcCccch
Q 002379 300 RFCCEEMKSACDAHLASLVGDIEDALILIDYGLEERATLLVASCLQVLLRELPSSLYNPKV 360 (929)
Q Consensus 300 ~~~~~~l~~~C~~~l~~~~~~~~n~~~~~~~a~~~~~~~L~~~c~~~i~~~~~~v~~~~~f 360 (929)
.|.+.+||..|+..|.+.++ ..||-.++++|.+|+|++|+..|++||..|+..++.....
T Consensus 797 qlli~~Lk~Ice~~ll~kl~-lk~~~~llefaamY~ak~L~~~C~dfic~N~~~~Learsi 856 (1267)
T KOG0783|consen 797 QLLILELKSICEQSLLRKLN-LKTLPTLLEFAAMYHAKELYSRCIDFICHNIEFFLEARSI 856 (1267)
T ss_pred HHHHHHHHHHHHHHHHhHhc-ccchHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHHhccH
Confidence 99999999999999999999 9999999999999999999999999999999887765444
No 88
>PLN02789 farnesyltranstransferase
Probab=99.58 E-value=4.5e-13 Score=144.47 Aligned_cols=206 Identities=10% Similarity=0.046 Sum_probs=142.9
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHhc-CHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCH--HHHHHHHHHHHhhccc
Q 002379 630 NQMLINDPGKSFLRFRQSLLLLRLN-CQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHR--EEALSRAEKSISIERT 706 (929)
Q Consensus 630 ~~al~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~--~eA~~~~~~al~~~p~ 706 (929)
.++++.+|++..+|..++.++..+| ++++++..++++++.+|++..+|...++++...|+. ++++.+++++++.+|+
T Consensus 61 ~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpk 140 (320)
T PLN02789 61 ADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAK 140 (320)
T ss_pred HHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcc
Confidence 6666666777777777777776666 456777777777777777777777777777666653 5666666777777666
Q ss_pred hHHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC--CCHHHHH
Q 002379 707 FEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI--KHTRAHQ 784 (929)
Q Consensus 707 ~~~~~~l~~~l~~~~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~--~~~~a~~ 784 (929)
+ ..+|...|.++...|++++|+++++++++. .+..+|.
T Consensus 141 N----------------------------------------y~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~ 180 (320)
T PLN02789 141 N----------------------------------------YHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWN 180 (320)
T ss_pred c----------------------------------------HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHH
Confidence 6 334555555555566666777777777665 4455666
Q ss_pred HHHHHHHHh---CC----HHHHHHHHHHHHHHccCCHHHHHHHh----h----hCCHHHHHHHHHHHHhcCCCCcHHHHH
Q 002379 785 GLARVYYLK---NE----LKAAYDEMTKLLEKAQYSASAFEKRS----E----YSDREMAKNDLNMATQLDPLRTYPYRY 849 (929)
Q Consensus 785 ~la~~~~~~---g~----~~~A~~~~~~al~~~p~~~~~~~~lg----~----~g~~~~A~~~~~~al~l~p~~~~~~~~ 849 (929)
.++.+.... |. .++++++..+++..+|++..+|..++ . +++..+|+..+.+++..+|.++.++..
T Consensus 181 ~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~ 260 (320)
T PLN02789 181 QRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSD 260 (320)
T ss_pred HHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHH
Confidence 666665554 22 24677888899999999988887766 1 234567888999999999999999999
Q ss_pred HHHHHHhcC------------------CHHHHHHHHHHHHhcCC
Q 002379 850 RAAVLMDDQ------------------KEVEAVEELSKAIAFKP 875 (929)
Q Consensus 850 la~~~~~~g------------------~~~eA~~~l~kal~~~p 875 (929)
++.+|.... ..++|.+.++..-+.+|
T Consensus 261 l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~~~d~ 304 (320)
T PLN02789 261 LLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELEVADP 304 (320)
T ss_pred HHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHHhhCc
Confidence 999997642 23668888777754555
No 89
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.58 E-value=8.5e-15 Score=151.13 Aligned_cols=146 Identities=16% Similarity=0.142 Sum_probs=135.5
Q ss_pred ccCCCCCCEEEEEcCeEEEeehhHHhccCHHHHHHhcCCCCcCCCCee--EecCCCCCHHHHHHHhhhHccCCCCCCChh
Q 002379 212 LSLEEDDSVTFCVRDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTI--DFSHDGVSVEGLRAVEVYTRTSRVDLFCPG 289 (929)
Q Consensus 212 ~~~~~~~~v~~~v~~~~~~~hr~iLaa~S~~F~~mf~~~~~e~~~~~i--~~~~~~~~~~~~~~~l~~~Yt~~~~~~~~~ 289 (929)
.+..+.+||.+..=|++.+.||.-| ..|+||++||.|.|+|++++.| +|.++.|+..+|..++--+|.+++. +..+
T Consensus 64 f~q~enSDv~l~alg~eWrlHk~yL-~QS~yf~smf~Gtw~es~~~iIqleI~Dp~Id~~al~~a~gsLY~dEve-I~l~ 141 (488)
T KOG4682|consen 64 FLQGENSDVILEALGFEWRLHKPYL-FQSEYFKSMFSGTWKESSMNIIQLEIPDPNIDVVALQVAFGSLYRDEVE-IKLS 141 (488)
T ss_pred HhcCCCcceehhhccceeeeeeeee-eccHHHHHHhccccChhhCceEEEEcCCCcccHHHHHHHHhhhhhhhee-ccHH
Confidence 3556667799999999999999999 6889999999999999999954 5567899999999999999999999 9999
Q ss_pred HHHHHHHHhchhChHhHHHHHHHHHHhhcCChhhHHHHHHHHHHhChHHHHHHHHHHHHhchhhhcCccch
Q 002379 290 IVLELLSFANRFCCEEMKSACDAHLASLVGDIEDALILIDYGLEERATLLVASCLQVLLRELPSSLYNPKV 360 (929)
Q Consensus 290 ~~~~ll~~A~~~~~~~l~~~C~~~l~~~~~~~~n~~~~~~~a~~~~~~~L~~~c~~~i~~~~~~v~~~~~f 360 (929)
.|..+|++|..+++++|.+.|.+.+.+.|+ +.|++.+++.+..|+...+++.|+++++.|+..+....-+
T Consensus 142 dv~gvlAaA~~lqldgl~qrC~evMie~ls-pkta~~yYea~ckYgle~vk~kc~ewl~~nl~~i~~~q~l 211 (488)
T KOG4682|consen 142 DVVGVLAAACLLQLDGLIQRCGEVMIETLS-PKTACGYYEAACKYGLESVKKKCLEWLLNNLMTIQNVQLL 211 (488)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHhcC-hhhhhHhhhhhhhhhhHHHHHHHHHHHHHhhHhhhhHHHH
Confidence 999999999999999999999999999999 9999999999999999999999999999999988776633
No 90
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.57 E-value=2.1e-12 Score=145.00 Aligned_cols=238 Identities=20% Similarity=0.155 Sum_probs=166.4
Q ss_pred CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch
Q 002379 636 DPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNH--------SSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF 707 (929)
Q Consensus 636 ~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~--------~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~ 707 (929)
+|....+...++..|..+|+++.|+..++.+++. .|.-......+|.+|...+++.+|+..|++|+.+..+.
T Consensus 195 ~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~ 274 (508)
T KOG1840|consen 195 DPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEV 274 (508)
T ss_pred CchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence 5667777888999999999999999999999988 56656666679999999999999999999999864321
Q ss_pred HHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC-------CCH
Q 002379 708 EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI-------KHT 780 (929)
Q Consensus 708 ~~~~~l~~~l~~~~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~-------~~~ 780 (929)
+ | ... ..-+.++.+||.+|...|++++|..++++|+++ .++
T Consensus 275 ---------~---G--~~h------------------~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~ 322 (508)
T KOG1840|consen 275 ---------F---G--EDH------------------PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHP 322 (508)
T ss_pred ---------c---C--CCC------------------HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChH
Confidence 0 0 000 000234566666666666666666666666655 122
Q ss_pred ---HHHHHHHHHHHHhCCHHHHHHHHHHHHHHcc--------CCHHHHHHHh----hhCCHHHHHHHHHHHHhcC-----
Q 002379 781 ---RAHQGLARVYYLKNELKAAYDEMTKLLEKAQ--------YSASAFEKRS----EYSDREMAKNDLNMATQLD----- 840 (929)
Q Consensus 781 ---~a~~~la~~~~~~g~~~~A~~~~~~al~~~p--------~~~~~~~~lg----~~g~~~~A~~~~~~al~l~----- 840 (929)
..+.+++.++..++++++|..++++++++.- .-+..+.++| ..|++++|.+.|++|+++.
T Consensus 323 ~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~ 402 (508)
T KOG1840|consen 323 EVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLG 402 (508)
T ss_pred HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhccc
Confidence 2445555566666666666666666654432 1123444444 3466666666666666543
Q ss_pred ---CCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCch----HHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 002379 841 ---PLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAF----KPDLQ----MLHLRAAFYESIGDLTSAIRDSQAALC 905 (929)
Q Consensus 841 ---p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~----~p~~~----~~~~la~~~~~~g~~~~A~~~~~~al~ 905 (929)
+....++..+|..+.+.+++.+|...|..++.+ .|+++ .+.++|.+|..+|++++|+++.++++.
T Consensus 403 ~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 403 KKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred CcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 344667889999999999999999999998765 34443 333889999999999999999999984
No 91
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.56 E-value=2.8e-12 Score=130.09 Aligned_cols=244 Identities=19% Similarity=0.197 Sum_probs=187.9
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHHHHHhcCCC
Q 002379 644 FRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLD 723 (929)
Q Consensus 644 ~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~l~~~l~~~~~~ 723 (929)
+..|.-+.-.++.++|+..|...++.+|...+++..+|.++...|..+.|+..-+..+. .|+..
T Consensus 39 Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT--------------- 102 (389)
T COG2956 39 YVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLT--------------- 102 (389)
T ss_pred HHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCc---------------
Confidence 45677777788999999999999999999999999999999999999999998776654 45440
Q ss_pred CCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHhCCHHHHHH
Q 002379 724 PESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI--KHTRAHQGLARVYYLKNELKAAYD 801 (929)
Q Consensus 724 ~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~--~~~~a~~~la~~~~~~g~~~~A~~ 801 (929)
+ -++..+...||.-|...|-+|.|.+.|...... --..+...|..+|....++++|++
T Consensus 103 ----------~----------~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId 162 (389)
T COG2956 103 ----------F----------EQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAID 162 (389)
T ss_pred ----------h----------HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHH
Confidence 0 011345677788888888888888888877775 234577788888888888888888
Q ss_pred HHHHHHHHccCCHH-----HHHHHh----hhCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 002379 802 EMTKLLEKAQYSAS-----AFEKRS----EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIA 872 (929)
Q Consensus 802 ~~~~al~~~p~~~~-----~~~~lg----~~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~ 872 (929)
..++.....++... .|..++ ...+.+.|+..+.+|++.+|++..+-..+|.+++..|+|+.|++.++.+++
T Consensus 163 ~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~e 242 (389)
T COG2956 163 VAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLE 242 (389)
T ss_pred HHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHH
Confidence 88888877766532 455555 336778888888888888888888888888888888888888888888888
Q ss_pred cCCCch--HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHhh
Q 002379 873 FKPDLQ--MLHLRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNRARDQ 923 (929)
Q Consensus 873 ~~p~~~--~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~l~~~ 923 (929)
.+|+.- .+-.+..+|.++|+.++.+..+.++.+..++......+...+..+
T Consensus 243 Qn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~ 295 (389)
T COG2956 243 QNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQ 295 (389)
T ss_pred hChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHh
Confidence 888763 333668888888888888888888888877766555555555443
No 92
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.56 E-value=1.7e-10 Score=125.94 Aligned_cols=429 Identities=14% Similarity=0.035 Sum_probs=258.5
Q ss_pred HHhhHHHHhcccHHHHHHHHHHHHhcCccccHH--HHHHHHHHhchHHHHHHHHHhhhccCCCchhhhHHHHHHhhhhHH
Q 002379 423 HQLGCVMFEREEYKDACYYFEAAADAGHIYSLA--GLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNLGREK 500 (929)
Q Consensus 423 ~~lG~~~~~~g~y~~A~~~f~~al~~~~~~~~a--~la~~~~~~g~a~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~A 500 (929)
+.--+.+...|+|++|.+...+.+.+.|+...+ .-..+..+.+.... |
T Consensus 16 ~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~------------------------------A 65 (652)
T KOG2376|consen 16 LTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYED------------------------------A 65 (652)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHH------------------------------H
Confidence 334456788899999999999999998776653 11122222222222 2
Q ss_pred HHHHHHHHhcCCC---ChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccC-CHhHHHHHHHHHHHhccHHHHHHHHHHHHh
Q 002379 501 IVDLNYASELDPT---LSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLALLA 576 (929)
Q Consensus 501 i~~~~kal~l~P~---~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~~g~~~~A~~~~~~al~ 576 (929)
+ +.++.++. .....+.+|.|.++++..++|+..++-. ++ ++.....+|++++++|+|++|+..|+.+++
T Consensus 66 L----k~ikk~~~~~~~~~~~fEKAYc~Yrlnk~Dealk~~~~~---~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~k 138 (652)
T KOG2376|consen 66 L----KLIKKNGALLVINSFFFEKAYCEYRLNKLDEALKTLKGL---DRLDDKLLELRAQVLYRLERYDEALDIYQHLAK 138 (652)
T ss_pred H----HHHHhcchhhhcchhhHHHHHHHHHcccHHHHHHHHhcc---cccchHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 2 12222321 1112268899999999999999999933 44 455788999999999999999999999988
Q ss_pred hcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCC-ChHHHHHHHHHHHHhcC
Q 002379 577 LESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPG-KSFLRFRQSLLLLRLNC 655 (929)
Q Consensus 577 ~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~~p~-~~~~~~~lg~~~~~~g~ 655 (929)
.+.++. +...-........ ...+. ..+.+...|. ..+.+|+.+.++...|+
T Consensus 139 n~~dd~------d~~~r~nl~a~~a--~l~~~--------------------~~q~v~~v~e~syel~yN~Ac~~i~~gk 190 (652)
T KOG2376|consen 139 NNSDDQ------DEERRANLLAVAA--ALQVQ--------------------LLQSVPEVPEDSYELLYNTACILIENGK 190 (652)
T ss_pred cCCchH------HHHHHHHHHHHHH--hhhHH--------------------HHHhccCCCcchHHHHHHHHHHHHhccc
Confidence 776665 2221111111110 00000 1233444444 56789999999999999
Q ss_pred HHHHHHHHHHHHhcC--------Cc-------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch-HHHHHHHHHHHh
Q 002379 656 QKAAMRCLRLARNHS--------SS-------EHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILAD 719 (929)
Q Consensus 656 ~~~A~~~l~~al~~~--------p~-------~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~~~~~l~~~l~~ 719 (929)
|.+|++.+++++++. .. -..+...++.++..+|+.++|...|...++.+|.+ .........+..
T Consensus 191 y~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva 270 (652)
T KOG2376|consen 191 YNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVA 270 (652)
T ss_pred HHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCchHHHHHhcchhh
Confidence 999999999994331 11 13356788999999999999999999999998877 333222233322
Q ss_pred cCCCCCChH-HHHHHHHHHhhc----hhccC---chhHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCHHH--HHHHHHH
Q 002379 720 TNLDPESST-YVIQLLEEALRC----PSDGL---RKGQALNNLGSIYVECGKLDQAENCYINALDIKHTRA--HQGLARV 789 (929)
Q Consensus 720 ~~~~~~~~~-~a~~~~e~Al~~----~~~al---~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~~~a--~~~la~~ 789 (929)
...+..-.. ..+...+.-... ....+ +....+.+.+...+..+.-+.+.+...+.-...+... -......
T Consensus 271 ~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t 350 (652)
T KOG2376|consen 271 LSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLPGMSPESLFPILLQEAT 350 (652)
T ss_pred hccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCccCchHHHHHHHHHHH
Confidence 221111111 111111110000 00111 1235667777777777777766655433222222211 1112222
Q ss_pred HHHhCCHHHHHHHHHHHHHHccCC-HHHHHHHh----hhCCHHHHHHHHHHHH--------hcCCCCcHHHHHHHHHHHh
Q 002379 790 YYLKNELKAAYDEMTKLLEKAQYS-ASAFEKRS----EYSDREMAKNDLNMAT--------QLDPLRTYPYRYRAAVLMD 856 (929)
Q Consensus 790 ~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~lg----~~g~~~~A~~~~~~al--------~l~p~~~~~~~~la~~~~~ 856 (929)
..+...+..|...+....+..|.+ ..+...++ ..|+++.|+..+.... +.. ..+.+-..+-..+..
T Consensus 351 ~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~-~~P~~V~aiv~l~~~ 429 (652)
T KOG2376|consen 351 KVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAK-HLPGTVGAIVALYYK 429 (652)
T ss_pred HHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhc-cChhHHHHHHHHHHh
Confidence 223336778888888888888877 23333333 5688888888888332 221 233344444446666
Q ss_pred cCCHHHHHHHHHHHHhcC----CCch---H-HHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHH
Q 002379 857 DQKEVEAVEELSKAIAFK----PDLQ---M-LHLRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLY 917 (929)
Q Consensus 857 ~g~~~eA~~~l~kal~~~----p~~~---~-~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~ 917 (929)
.++-+-|...+..++..- +... . +...+.+..+.|+-++|...+++.++.+|++.++...+
T Consensus 430 ~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~l 498 (652)
T KOG2376|consen 430 IKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQL 498 (652)
T ss_pred ccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHH
Confidence 666655666666665431 1112 2 22447777778999999999999999999988876543
No 93
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.52 E-value=4.4e-10 Score=119.24 Aligned_cols=385 Identities=12% Similarity=-0.013 Sum_probs=233.3
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccCCHh-HHHHHHHHHHHhccHHHHHHHHHHHHhh
Q 002379 499 EKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVD-CLELRAWLFIAADDYESALRDTLALLAL 577 (929)
Q Consensus 499 ~Ai~~~~kal~l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~a~~~~~~g~~~~A~~~~~~al~~ 577 (929)
.|...|++|+..+-.+...|+..+.+-++.++...|...+++++.+-|..+ .++.....--.+|+...|...|++-++.
T Consensus 91 RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w 170 (677)
T KOG1915|consen 91 RARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEW 170 (677)
T ss_pred HHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcC
Confidence 788888888888888888888888888888888888888888887776333 3555555556678888888888888888
Q ss_pred cCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHH
Q 002379 578 ESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQK 657 (929)
Q Consensus 578 ~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~ 657 (929)
.|+...|.. .-........++.| -..|++-+-..| +...|...+..-.+.|+..
T Consensus 171 ~P~eqaW~s-------fI~fElRykeiera------------------R~IYerfV~~HP-~v~~wikyarFE~k~g~~~ 224 (677)
T KOG1915|consen 171 EPDEQAWLS-------FIKFELRYKEIERA------------------RSIYERFVLVHP-KVSNWIKYARFEEKHGNVA 224 (677)
T ss_pred CCcHHHHHH-------HHHHHHHhhHHHHH------------------HHHHHHHheecc-cHHHHHHHHHHHHhcCcHH
Confidence 887764411 22222333344444 333466666665 4567778888888888888
Q ss_pred HHHHHHHHHHhcCCchH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch--HHHHHHHHHHHhcCCCCCChHHHHH
Q 002379 658 AAMRCLRLARNHSSSEH---ERLVYEGWILYDTGHREEALSRAEKSISIERTF--EAFFLKAYILADTNLDPESSTYVIQ 732 (929)
Q Consensus 658 ~A~~~l~~al~~~p~~~---~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~--~~~~~l~~~l~~~~~~~~~~~~a~~ 732 (929)
-|...|++|++.-.++. ..+...|..-..+..++.|...|+-|+..-|.+ ...+..-.....+.-+....+.++-
T Consensus 225 ~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv 304 (677)
T KOG1915|consen 225 LARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIV 304 (677)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHh
Confidence 88888888887655442 233444555566777888888888888877777 3333222233333323333333321
Q ss_pred HHHHHhhchhccCc--h--hHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCH-----------HHHHHHHH-HHHHhCCH
Q 002379 733 LLEEALRCPSDGLR--K--GQALNNLGSIYVECGKLDQAENCYINALDIKHT-----------RAHQGLAR-VYYLKNEL 796 (929)
Q Consensus 733 ~~e~Al~~~~~al~--~--~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~~-----------~a~~~la~-~~~~~g~~ 796 (929)
. .. .-.|++.+. | -++|...-.+-...|+.+.-.+.|++|+..-+| ..|.+.+. .-....+.
T Consensus 305 ~-KR-k~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ 382 (677)
T KOG1915|consen 305 G-KR-KFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDV 382 (677)
T ss_pred h-hh-hhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 0 00 001111111 1 255666666666667777777777777766333 12222221 12234566
Q ss_pred HHHHHHHHHHHHHccCC----HHHHHHHh----hhCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHH
Q 002379 797 KAAYDEMTKLLEKAQYS----ASAFEKRS----EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELS 868 (929)
Q Consensus 797 ~~A~~~~~~al~~~p~~----~~~~~~lg----~~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~ 868 (929)
+.+.+.|+.++++-|.. +.+|...+ ...+...|...+-.|+..-|.+ ........+-.+.++++.....|+
T Consensus 383 ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~-KlFk~YIelElqL~efDRcRkLYE 461 (677)
T KOG1915|consen 383 ERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKD-KLFKGYIELELQLREFDRCRKLYE 461 (677)
T ss_pred HHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCch-hHHHHHHHHHHHHhhHHHHHHHHH
Confidence 67777777777766653 22343333 3456667777777777766633 233333445556667777777777
Q ss_pred HHHhcCCCchHHH-HHHHHHHHcCCHHHHHHHHHHHhccCCCCHH
Q 002379 869 KAIAFKPDLQMLH-LRAAFYESIGDLTSAIRDSQAALCLDPNHME 912 (929)
Q Consensus 869 kal~~~p~~~~~~-~la~~~~~~g~~~~A~~~~~~al~l~P~~~~ 912 (929)
+-++..|.+-..+ ..|.+-..+|+.+.|...|+-|+....-+..
T Consensus 462 kfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmp 506 (677)
T KOG1915|consen 462 KFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMP 506 (677)
T ss_pred HHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccH
Confidence 7777777664333 4466666677777777777777665544333
No 94
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.43 E-value=5.1e-10 Score=117.55 Aligned_cols=292 Identities=13% Similarity=0.011 Sum_probs=201.1
Q ss_pred HHHHhccHHHHHHHHHHHHhhcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcC
Q 002379 557 LFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLIND 636 (929)
Q Consensus 557 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~~ 636 (929)
.-+..|+|..|.+...+.-+..+.-. -++..-+......|+.+.+..++ .++-+..
T Consensus 93 ~~l~eG~~~qAEkl~~rnae~~e~p~------l~~l~aA~AA~qrgd~~~an~yL------------------~eaae~~ 148 (400)
T COG3071 93 LKLFEGDFQQAEKLLRRNAEHGEQPV------LAYLLAAEAAQQRGDEDRANRYL------------------AEAAELA 148 (400)
T ss_pred HHHhcCcHHHHHHHHHHhhhcCcchH------HHHHHHHHHHHhcccHHHHHHHH------------------HHHhccC
Confidence 33445666666665555444333332 23333344445556666665555 4444442
Q ss_pred C-CChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch-HHHHHHH
Q 002379 637 P-GKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKA 714 (929)
Q Consensus 637 p-~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~~~~~l~ 714 (929)
+ +.-.....++.+....|+++.|.....++++..|.+++++.....+|...|++.+......+.-+..--. +-+.
T Consensus 149 ~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~--- 225 (400)
T COG3071 149 GDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAA--- 225 (400)
T ss_pred CCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHH---
Confidence 2 2234566788889999999999999999999999999999999999999999999988887766533211 0000
Q ss_pred HHHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHH
Q 002379 715 YILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI--KHTRAHQGLARVYYL 792 (929)
Q Consensus 715 ~~l~~~~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~--~~~~a~~~la~~~~~ 792 (929)
+++ ..++..+-.-....+..+.=..++++.-.. .++.....++.-+..
T Consensus 226 ------------------~le------------~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~ 275 (400)
T COG3071 226 ------------------RLE------------QQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIR 275 (400)
T ss_pred ------------------HHH------------HHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHH
Confidence 000 011111111111111112222233332222 456777777888888
Q ss_pred hCCHHHHHHHHHHHHHHccCCHHHHHHHh--hhCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 002379 793 KNELKAAYDEMTKLLEKAQYSASAFEKRS--EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKA 870 (929)
Q Consensus 793 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg--~~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~ka 870 (929)
.|+.++|.+....+++..-+.. .....+ ..++...=++..++.++..|+++..+..+|.++++.+.|.+|.+.|+.+
T Consensus 276 l~~~~~A~~~i~~~Lk~~~D~~-L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaA 354 (400)
T COG3071 276 LGDHDEAQEIIEDALKRQWDPR-LCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAA 354 (400)
T ss_pred cCChHHHHHHHHHHHHhccChh-HHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 8888888888888887654433 222222 5678888888899999999999999999999999999999999999999
Q ss_pred HhcCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 002379 871 IAFKPDLQMLHLRAAFYESIGDLTSAIRDSQAALCL 906 (929)
Q Consensus 871 l~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 906 (929)
++..|+...+..+|.++.++|+..+|.+.++.++.+
T Consensus 355 l~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 355 LKLRPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999854
No 95
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.42 E-value=5.8e-10 Score=114.19 Aligned_cols=268 Identities=12% Similarity=-0.057 Sum_probs=175.5
Q ss_pred hhHHHHHHHHHHhcCCCCh-HHHHHHHHHHHHhCCHHHHHHHHHHHhcccC-CHhHHHHHHHHHHHhccHHHHHHHHHHH
Q 002379 497 GREKIVDLNYASELDPTLS-FPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLAL 574 (929)
Q Consensus 497 ~~~Ai~~~~kal~l~P~~~-~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~~g~~~~A~~~~~~a 574 (929)
...|+..++-...++.... ..-..+|.+++..|+|++|+..|+-+...+. +.+...+++.+++.+|.|.+|...-.+
T Consensus 38 ytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~k- 116 (557)
T KOG3785|consen 38 YTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEK- 116 (557)
T ss_pred chhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhh-
Confidence 3477777777766654433 5566789999999999999999999886443 566688899999999999999876554
Q ss_pred HhhcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHHHHhc
Q 002379 575 LALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLN 654 (929)
Q Consensus 575 l~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~lg~~~~~~g 654 (929)
.|+.+ -...++-.+....++-.+ ++ .+.+.+.. ..+-...++.+.+..-
T Consensus 117 ---a~k~p------L~~RLlfhlahklndEk~---~~----------------~fh~~LqD---~~EdqLSLAsvhYmR~ 165 (557)
T KOG3785|consen 117 ---APKTP------LCIRLLFHLAHKLNDEKR---IL----------------TFHSSLQD---TLEDQLSLASVHYMRM 165 (557)
T ss_pred ---CCCCh------HHHHHHHHHHHHhCcHHH---HH----------------HHHHHHhh---hHHHHHhHHHHHHHHH
Confidence 46666 333334444444333221 12 12222221 1233456777777778
Q ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch-HHHHHHHHHHHhcCCCCCChHHHHHH
Q 002379 655 CQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQL 733 (929)
Q Consensus 655 ~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~~~~~l~~~l~~~~~~~~~~~~a~~~ 733 (929)
.|.+|+..|.+.+..+|+......+++.+|+++.-|+-+.+.+.--++..|+. -+...++..+.+.-.......+....
T Consensus 166 HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~l 245 (557)
T KOG3785|consen 166 HYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKEL 245 (557)
T ss_pred HHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHH
Confidence 89999999999999999988888899999999999999999999999999988 66666666555443211111111111
Q ss_pred -------HHHHhhchhcc----------Cc--h------hHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCHHHHHHHHH
Q 002379 734 -------LEEALRCPSDG----------LR--K------GQALNNLGSIYVECGKLDQAENCYINALDIKHTRAHQGLAR 788 (929)
Q Consensus 734 -------~e~Al~~~~~a----------l~--~------~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~~~a~~~la~ 788 (929)
|+.+....+.. ++ | +++..++...|..+++.++|+...+.. +-..|.-+...|.
T Consensus 246 adN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl-~PttP~EyilKgv 324 (557)
T KOG3785|consen 246 ADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDL-DPTTPYEYILKGV 324 (557)
T ss_pred HhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhc-CCCChHHHHHHHH
Confidence 11111111111 11 1 478888999999999999998876542 2233444555566
Q ss_pred HHHHhCCHH
Q 002379 789 VYYLKNELK 797 (929)
Q Consensus 789 ~~~~~g~~~ 797 (929)
+....|+--
T Consensus 325 v~aalGQe~ 333 (557)
T KOG3785|consen 325 VFAALGQET 333 (557)
T ss_pred HHHHhhhhc
Confidence 666655543
No 96
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.40 E-value=1.2e-11 Score=129.87 Aligned_cols=201 Identities=14% Similarity=0.105 Sum_probs=147.8
Q ss_pred hcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch-HH
Q 002379 634 INDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEH---ERLVYEGWILYDTGHREEALSRAEKSISIERTF-EA 709 (929)
Q Consensus 634 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~---~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~~ 709 (929)
..++..+..++.+|..+...|++++|+..|++++..+|+++ .+++.+|.++...|++++|+..|+++++..|++ ..
T Consensus 27 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 106 (235)
T TIGR03302 27 PVEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDA 106 (235)
T ss_pred CcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCch
Confidence 34566788899999999999999999999999999988765 578899999999999999999999999998876 11
Q ss_pred HHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 002379 710 FFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIKHTRAHQGLARV 789 (929)
Q Consensus 710 ~~~l~~~l~~~~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~~~a~~~la~~ 789 (929)
..+++.+|.++... .+.+
T Consensus 107 --------------------------------------~~a~~~~g~~~~~~------------------------~~~~ 124 (235)
T TIGR03302 107 --------------------------------------DYAYYLRGLSNYNQ------------------------IDRV 124 (235)
T ss_pred --------------------------------------HHHHHHHHHHHHHh------------------------cccc
Confidence 12244455554432 1112
Q ss_pred HHHhCCHHHHHHHHHHHHHHccCCHHHHHHHhhhCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHH
Q 002379 790 YYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSK 869 (929)
Q Consensus 790 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~k 869 (929)
+...|++++|++.+++++..+|++...+..+...+..... .......+|.++...|++.+|+..+++
T Consensus 125 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~-------------~~~~~~~~a~~~~~~g~~~~A~~~~~~ 191 (235)
T TIGR03302 125 DRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNR-------------LAGKELYVARFYLKRGAYVAAINRFET 191 (235)
T ss_pred cCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 3344667777777888888888776554332211111100 112345788899999999999999999
Q ss_pred HHhcCCCch----HHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 002379 870 AIAFKPDLQ----MLHLRAAFYESIGDLTSAIRDSQAALCLDPN 909 (929)
Q Consensus 870 al~~~p~~~----~~~~la~~~~~~g~~~~A~~~~~~al~l~P~ 909 (929)
+++..|+.+ .++.+|.++..+|++++|..+++......|+
T Consensus 192 al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~~ 235 (235)
T TIGR03302 192 VVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYPD 235 (235)
T ss_pred HHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 999988753 4557799999999999999998888776663
No 97
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.39 E-value=3.7e-09 Score=108.36 Aligned_cols=434 Identities=14% Similarity=0.047 Sum_probs=221.3
Q ss_pred hHHHHHHHHHhhcchHHHHHHHHHHHhhHHHHhcccHHHHHHHHHHHHhcCccccH--HHHHHHHHHhchHHHHHHHHHh
Q 002379 399 NTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGHIYSL--AGLARAKYKVGQQYSAYKLINS 476 (929)
Q Consensus 399 ~~~~~~Le~l~~~~~~~~~~a~~~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~~~--a~la~~~~~~g~a~~a~~~~~~ 476 (929)
..++.+|+......... ....-..+|.+++..|+|++|+..|+.+.+.+.-... ..+|-+++-.|...++-..+.+
T Consensus 39 tGAislLefk~~~~~EE--E~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~k 116 (557)
T KOG3785|consen 39 TGAISLLEFKLNLDREE--EDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEK 116 (557)
T ss_pred hhHHHHHHHhhccchhh--hHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhh
Confidence 34566666554332222 1223345899999999999999999998887433332 2667777766665554332221
Q ss_pred hhccCCCc-hhhhHHHHHHhhhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccCCHhH-HHHH
Q 002379 477 IISEHKPT-GWMYQERSLYNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDC-LELR 554 (929)
Q Consensus 477 ~~~~~~~~-~~~~~~~~l~~~~~~Ai~~~~kal~l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~ 554 (929)
.++ .|. .....-.+.--..++.+..|.+.+.- ..+-...+|.+.+..-.|.+|+..|.+++..++.-.. -..+
T Consensus 117 -a~k-~pL~~RLlfhlahklndEk~~~~fh~~LqD---~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ 191 (557)
T KOG3785|consen 117 -APK-TPLCIRLLFHLAHKLNDEKRILTFHSSLQD---TLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYM 191 (557)
T ss_pred -CCC-ChHHHHHHHHHHHHhCcHHHHHHHHHHHhh---hHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHH
Confidence 111 111 11111111111112444444444432 1233444555555555666677777766644431111 2345
Q ss_pred HHHHHHhccHHHHHHHHHHHHhhcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHh
Q 002379 555 AWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLI 634 (929)
Q Consensus 555 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~ 634 (929)
+.+|+++.-|+-+.+.+.--+...|+.+ -+..+.+......=.-..|+.-. +-+.
T Consensus 192 ALCyyKlDYydvsqevl~vYL~q~pdSt------iA~NLkacn~fRl~ngr~ae~E~-------------------k~la 246 (557)
T KOG3785|consen 192 ALCYYKLDYYDVSQEVLKVYLRQFPDST------IAKNLKACNLFRLINGRTAEDEK-------------------KELA 246 (557)
T ss_pred HHHHHhcchhhhHHHHHHHHHHhCCCcH------HHHHHHHHHHhhhhccchhHHHH-------------------HHHH
Confidence 6666666666666666666666666666 22323332222211111111000 1111
Q ss_pred cCCCChHHHHHHHHHHHHh-----cCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch-H
Q 002379 635 NDPGKSFLRFRQSLLLLRL-----NCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-E 708 (929)
Q Consensus 635 ~~p~~~~~~~~lg~~~~~~-----g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~ 708 (929)
.+-+. -+--+.-+.+. .+-+.|++.+--.++.- |++..++...|.++++.++|+...+. ++|.. .
T Consensus 247 dN~~~---~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~I---PEARlNL~iYyL~q~dVqeA~~L~Kd---l~PttP~ 317 (557)
T KOG3785|consen 247 DNIDQ---EYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHI---PEARLNLIIYYLNQNDVQEAISLCKD---LDPTTPY 317 (557)
T ss_pred hcccc---cchhHHHHHHcCeEEEeCCccHHHhchHHHhhC---hHhhhhheeeecccccHHHHHHHHhh---cCCCChH
Confidence 11110 01111111111 12234444444333333 66888899999999999999888764 56666 5
Q ss_pred HHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhcc----Cc--hhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC--CCH
Q 002379 709 AFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDG----LR--KGQALNNLGSIYVECGKLDQAENCYINALDI--KHT 780 (929)
Q Consensus 709 ~~~~l~~~l~~~~~~~~~~~~a~~~~e~Al~~~~~a----l~--~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~--~~~ 780 (929)
-+...|......|...++.+ ...-|...++-. +. .......++..++...++++-+.++...-.. ++.
T Consensus 318 EyilKgvv~aalGQe~gSre----HlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD 393 (557)
T KOG3785|consen 318 EYILKGVVFAALGQETGSRE----HLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDD 393 (557)
T ss_pred HHHHHHHHHHHhhhhcCcHH----HHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 56666666666553333322 223333322211 10 0122334455555555666665555444333 444
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHhhhCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCH
Q 002379 781 RAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKE 860 (929)
Q Consensus 781 ~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~ 860 (929)
...+++|.++...|++.+|.+.|-+.-...-. +.......+|.+|...++.
T Consensus 394 ~Fn~N~AQAk~atgny~eaEelf~~is~~~ik-----------------------------n~~~Y~s~LArCyi~nkkP 444 (557)
T KOG3785|consen 394 DFNLNLAQAKLATGNYVEAEELFIRISGPEIK-----------------------------NKILYKSMLARCYIRNKKP 444 (557)
T ss_pred hhhhHHHHHHHHhcChHHHHHHHhhhcChhhh-----------------------------hhHHHHHHHHHHHHhcCCc
Confidence 55566666666666666666655443222111 1122234678888888888
Q ss_pred HHHHHHHHHHHhcCCCchH--HH-HHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 002379 861 VEAVEELSKAIAFKPDLQM--LH-LRAAFYESIGDLTSAIRDSQAALCLDPN 909 (929)
Q Consensus 861 ~eA~~~l~kal~~~p~~~~--~~-~la~~~~~~g~~~~A~~~~~~al~l~P~ 909 (929)
+-|.+.+-+ .+..... +. +.|...++.+++--|.+.|...-.+||+
T Consensus 445 ~lAW~~~lk---~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~ 493 (557)
T KOG3785|consen 445 QLAWDMMLK---TNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPT 493 (557)
T ss_pred hHHHHHHHh---cCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCC
Confidence 888777643 2322222 22 4477777788888888888887777775
No 98
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.38 E-value=2.4e-10 Score=128.07 Aligned_cols=285 Identities=10% Similarity=0.018 Sum_probs=196.4
Q ss_pred HHHHHHHHHHhcCCCC---hHHHHHHHHHHHHhCCHHHHHHHHHHHhcccC-CHhHHHHHHHHHHHhccHHHHHHHHHHH
Q 002379 499 EKIVDLNYASELDPTL---SFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLAL 574 (929)
Q Consensus 499 ~Ai~~~~kal~l~P~~---~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~~g~~~~A~~~~~~a 574 (929)
++...+.++....|.+ ....+.+|..+...|++++|...++++++..| ++..+.. +..+...|++..+.....++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~ 102 (355)
T cd05804 24 AAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARV 102 (355)
T ss_pred hHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHH
Confidence 5566677777666654 45677889999999999999999999998887 4434443 55555555544444444444
Q ss_pred H----hhcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHH
Q 002379 575 L----ALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLL 650 (929)
Q Consensus 575 l----~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~lg~~~ 650 (929)
+ ..+|... .....++.++...|++++|...+ +++++.+|+++.++..+|.++
T Consensus 103 l~~~~~~~~~~~------~~~~~~a~~~~~~G~~~~A~~~~------------------~~al~~~p~~~~~~~~la~i~ 158 (355)
T cd05804 103 LPLWAPENPDYW------YLLGMLAFGLEEAGQYDRAEEAA------------------RRALELNPDDAWAVHAVAHVL 158 (355)
T ss_pred HhccCcCCCCcH------HHHHHHHHHHHHcCCHHHHHHHH------------------HHHHhhCCCCcHHHHHHHHHH
Confidence 4 3334433 45667888999999999996666 999999999999999999999
Q ss_pred HHhcCHHHHHHHHHHHHhcCCchH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch--HHHH-HHHHHHHhcCCC
Q 002379 651 LRLNCQKAAMRCLRLARNHSSSEH----ERLVYEGWILYDTGHREEALSRAEKSISIERTF--EAFF-LKAYILADTNLD 723 (929)
Q Consensus 651 ~~~g~~~~A~~~l~~al~~~p~~~----~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~--~~~~-~l~~~l~~~~~~ 723 (929)
...|++++|+..+++++...|..+ ..+..+|.++...|++++|+..|++++...|.. .... ..+..+......
T Consensus 159 ~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 238 (355)
T cd05804 159 EMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELA 238 (355)
T ss_pred HHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhc
Confidence 999999999999999999887443 345679999999999999999999998776622 1111 111111111100
Q ss_pred CCChHHHHHHHHHHhhchhccCc-h--hHHHHHHHHHHHHcCCHHHHHHHHHHHHcC--C---------CHHHHHHHHHH
Q 002379 724 PESSTYVIQLLEEALRCPSDGLR-K--GQALNNLGSIYVECGKLDQAENCYINALDI--K---------HTRAHQGLARV 789 (929)
Q Consensus 724 ~~~~~~a~~~~e~Al~~~~~al~-~--~~a~~~lg~~~~~~g~~~eA~~~~~~al~~--~---------~~~a~~~la~~ 789 (929)
+. ......++.+......... . .......+.++...|+.++|...++..... . ........+.+
T Consensus 239 -g~-~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~ 316 (355)
T cd05804 239 -GH-VDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALY 316 (355)
T ss_pred -CC-CChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHH
Confidence 00 1112233322222111100 1 122235778888899999999988877654 1 12356677888
Q ss_pred HHHhCCHHHHHHHHHHHHHHc
Q 002379 790 YYLKNELKAAYDEMTKLLEKA 810 (929)
Q Consensus 790 ~~~~g~~~~A~~~~~~al~~~ 810 (929)
+...|++++|.+.+..++...
T Consensus 317 ~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 317 AFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHcCCHHHHHHHHHHHHHHH
Confidence 899999999999999998765
No 99
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.37 E-value=4.2e-11 Score=125.74 Aligned_cols=175 Identities=14% Similarity=0.031 Sum_probs=145.7
Q ss_pred cCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccC-CH---hHHHHHHHHHHHhccHHHHHHHHHHHHhhcCCchhhh
Q 002379 510 LDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SV---DCLELRAWLFIAADDYESALRDTLALLALESNYMMFH 585 (929)
Q Consensus 510 l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~---~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 585 (929)
.++..+..++.+|..++..|++++|+..|++++...| ++ ..++.+|.++...|++++|+..|+++++..|+++..
T Consensus 28 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~- 106 (235)
T TIGR03302 28 VEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDA- 106 (235)
T ss_pred cccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCch-
Confidence 4566788999999999999999999999999998887 33 467899999999999999999999999999988822
Q ss_pred ccccHHHHHHHHHHhh--------cccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHH--------------
Q 002379 586 GRVSGDHLVKLLNHHV--------RSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLR-------------- 643 (929)
Q Consensus 586 ~~~~a~~ll~~~~~~~--------~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~~p~~~~~~-------------- 643 (929)
..++..+|.++... +++++|... +++++..+|++..++
T Consensus 107 --~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~------------------~~~~~~~~p~~~~~~~a~~~~~~~~~~~~ 166 (235)
T TIGR03302 107 --DYAYYLRGLSNYNQIDRVDRDQTAAREAFEA------------------FQELIRRYPNSEYAPDAKKRMDYLRNRLA 166 (235)
T ss_pred --HHHHHHHHHHHHHhcccccCCHHHHHHHHHH------------------HHHHHHHCCCChhHHHHHHHHHHHHHHHH
Confidence 02567778887654 566666444 488888888876442
Q ss_pred ---HHHHHHHHHhcCHHHHHHHHHHHHhcCCch---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc
Q 002379 644 ---FRQSLLLLRLNCQKAAMRCLRLARNHSSSE---HERLVYEGWILYDTGHREEALSRAEKSISIER 705 (929)
Q Consensus 644 ---~~lg~~~~~~g~~~~A~~~l~~al~~~p~~---~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p 705 (929)
..+|..+...|++.+|+..++++++..|+. +.++..+|.++...|++++|..+++......|
T Consensus 167 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 167 GKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 367888999999999999999999997654 68999999999999999999999888766544
No 100
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.36 E-value=2.8e-09 Score=116.67 Aligned_cols=352 Identities=17% Similarity=0.118 Sum_probs=218.1
Q ss_pred hhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccCCHhHHHHHHHHHHHhccHHHHHHHHHHHHh
Q 002379 497 GREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLA 576 (929)
Q Consensus 497 ~~~Ai~~~~kal~l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~ 576 (929)
+++|++...+.+...|++..+....-.++.+.++|++|+...+.-..........+..+.|.++++..++|+..++ .
T Consensus 28 ~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~Dealk~~~---~ 104 (652)
T KOG2376|consen 28 YEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDEALKTLK---G 104 (652)
T ss_pred HHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHHHHHHHh---c
Confidence 3489999999999999999999999999999999999996666543222222233689999999999999999998 4
Q ss_pred hcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHHHHhcCH
Q 002379 577 LESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQ 656 (929)
Q Consensus 577 ~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~lg~~~~~~g~~ 656 (929)
.++.+. ..+++.+.+....++|++| +..|+..++.+.++.+............ -
T Consensus 105 ~~~~~~------~ll~L~AQvlYrl~~ydea------------------ldiY~~L~kn~~dd~d~~~r~nl~a~~a--~ 158 (652)
T KOG2376|consen 105 LDRLDD------KLLELRAQVLYRLERYDEA------------------LDIYQHLAKNNSDDQDEERRANLLAVAA--A 158 (652)
T ss_pred ccccch------HHHHHHHHHHHHHhhHHHH------------------HHHHHHHHhcCCchHHHHHHHHHHHHHH--h
Confidence 455555 6788899999999999999 4555777777766655444333222111 0
Q ss_pred HHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHHHHHhcCCCCCChHHHHHHHH
Q 002379 657 KAAMRCLRLARNHSSS-EHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLE 735 (929)
Q Consensus 657 ~~A~~~l~~al~~~p~-~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~l~~~l~~~~~~~~~~~~a~~~~e 735 (929)
-.+ . ..+.+...|. ..+.+++.+-++...|+|.+|++.+++++++.... +..++.. -..++
T Consensus 159 l~~-~-~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~--------------l~~~d~~--eEeie 220 (652)
T KOG2376|consen 159 LQV-Q-LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREK--------------LEDEDTN--EEEIE 220 (652)
T ss_pred hhH-H-HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHh--------------hcccccc--hhhHH
Confidence 111 1 3334444444 57788999999999999999999999997765432 0000000 00111
Q ss_pred HHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCHH----------------------------------
Q 002379 736 EALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIKHTR---------------------------------- 781 (929)
Q Consensus 736 ~Al~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~~~---------------------------------- 781 (929)
.-+ ......++.++..+|+.++|...|...++.++++
T Consensus 221 ~el---------~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~ 291 (652)
T KOG2376|consen 221 EEL---------NPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVF 291 (652)
T ss_pred HHH---------HHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHH
Confidence 111 3456677788888888888888887777663221
Q ss_pred -----------------HHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHH-HHHHHh---hhCCHHHHHHHHHHHHhcC
Q 002379 782 -----------------AHQGLARVYYLKNELKAAYDEMTKLLEKAQYSAS-AFEKRS---EYSDREMAKNDLNMATQLD 840 (929)
Q Consensus 782 -----------------a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~lg---~~g~~~~A~~~~~~al~l~ 840 (929)
.+.+.+......+..+.+.+...+.-...|+... +..... ......+|...+....+..
T Consensus 292 ~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~ 371 (652)
T KOG2376|consen 292 KLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGH 371 (652)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccC
Confidence 1111222222222222222222111111122111 111111 1124567788888888888
Q ss_pred CCC-cHHHHHHHHHHHhcCCHHHHHHHHH--------HHHhcCCCchHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 002379 841 PLR-TYPYRYRAAVLMDDQKEVEAVEELS--------KAIAFKPDLQMLHLRAAFYESIGDLTSAIRDSQAAL 904 (929)
Q Consensus 841 p~~-~~~~~~la~~~~~~g~~~eA~~~l~--------kal~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al 904 (929)
|.. ..+...++.+...+|+++.|++.+. ...+..-.....-.+-..|.+.++.+.|...+..|+
T Consensus 372 p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai 444 (652)
T KOG2376|consen 372 PEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAI 444 (652)
T ss_pred CchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHH
Confidence 866 6677888889999999999999998 444433333333344444555555444444444444
No 101
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.36 E-value=1.2e-11 Score=118.34 Aligned_cols=121 Identities=13% Similarity=0.034 Sum_probs=95.3
Q ss_pred HHHHHHHHHccCCHHHHHHHh----hhCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 002379 801 DEMTKLLEKAQYSASAFEKRS----EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPD 876 (929)
Q Consensus 801 ~~~~~al~~~p~~~~~~~~lg----~~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~ 876 (929)
..++++++.+|++ +..+| ..|++++|+..|++++.++|.+..++..+|.++...|++++|+..|+++++++|+
T Consensus 14 ~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~ 90 (144)
T PRK15359 14 DILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS 90 (144)
T ss_pred HHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 3455556655554 22223 4566666777777777777888888888999999999999999999999999998
Q ss_pred chHHH-HHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHhhh
Q 002379 877 LQMLH-LRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNRARDQA 924 (929)
Q Consensus 877 ~~~~~-~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~l~~~~ 924 (929)
++..+ .+|.++..+|++++|+..|+++++++|++++.+.+++.++...
T Consensus 91 ~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 91 HPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMV 139 (144)
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 87655 7799999999999999999999999999999998888877554
No 102
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.34 E-value=3.3e-11 Score=125.37 Aligned_cols=211 Identities=18% Similarity=0.150 Sum_probs=143.3
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCC------chHHHHHHHHHHHHHcCCH-------------HHHHHHHHHHHh
Q 002379 642 LRFRQSLLLLRLNCQKAAMRCLRLARNHSS------SEHERLVYEGWILYDTGHR-------------EEALSRAEKSIS 702 (929)
Q Consensus 642 ~~~~lg~~~~~~g~~~~A~~~l~~al~~~p------~~~~~~~~lg~~~~~~g~~-------------~eA~~~~~~al~ 702 (929)
.--++|..+.-.|.|++|+.+..+-+.+.. ....+++++|.+|...|+. +++...++.|.+
T Consensus 97 ssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~ 176 (639)
T KOG1130|consen 97 SSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVK 176 (639)
T ss_pred ccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHH
Confidence 334566777777777777766655544322 1255777788888776652 233333333332
Q ss_pred hccchHHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchh---ccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC--
Q 002379 703 IERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPS---DGLRKGQALNNLGSIYVECGKLDQAENCYINALDI-- 777 (929)
Q Consensus 703 ~~p~~~~~~~l~~~l~~~~~~~~~~~~a~~~~e~Al~~~~---~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~-- 777 (929)
..-.+ ++..+ .....+.++-+||+.|+-.|+|++|+..-+.-+.+
T Consensus 177 fy~eN------------------------------L~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~ 226 (639)
T KOG1130|consen 177 FYMEN------------------------------LELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQ 226 (639)
T ss_pred HHHHH------------------------------HHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHH
Confidence 21111 11100 01123578999999999999999999988877766
Q ss_pred --C----CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHhhhCCHHHHHHHHHHHHhcCCCCcHHHHHHH
Q 002379 778 --K----HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRA 851 (929)
Q Consensus 778 --~----~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~g~~~~A~~~~~~al~l~p~~~~~~~~la 851 (929)
+ .-+++.++|.++.-+|+++.|++.|+..+.+.- +.=++.. .+...+.+|
T Consensus 227 efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAi-------------------elg~r~v-----EAQscYSLg 282 (639)
T KOG1130|consen 227 EFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAI-------------------ELGNRTV-----EAQSCYSLG 282 (639)
T ss_pred HhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHH-------------------HhcchhH-----HHHHHHHhh
Confidence 2 226899999999999999999999998876521 1111111 234567789
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCc-------hHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 002379 852 AVLMDDQKEVEAVEELSKAIAFKPDL-------QMLHLRAAFYESIGDLTSAIRDSQAALCL 906 (929)
Q Consensus 852 ~~~~~~g~~~eA~~~l~kal~~~p~~-------~~~~~la~~~~~~g~~~~A~~~~~~al~l 906 (929)
..|.-..++++||+++.+-+.+.... ...|.+|..|...|..++|+.+.++.+++
T Consensus 283 Ntytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 283 NTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 99999999999999999988765432 24557899999999999999998888765
No 103
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.33 E-value=9.7e-10 Score=125.43 Aligned_cols=268 Identities=18% Similarity=0.106 Sum_probs=206.9
Q ss_pred ChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch-HHHHHHHHHH
Q 002379 639 KSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYIL 717 (929)
Q Consensus 639 ~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~~~~~l~~~l 717 (929)
+.++......++...|++++|+..++.....-.+....+...|.++.++|++++|...|+..+..+|++ ..+..+..++
T Consensus 3 ~SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~ 82 (517)
T PF12569_consen 3 HSELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEAL 82 (517)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence 356777888999999999999999999988888989999999999999999999999999999999999 7777777776
Q ss_pred HhcC-CCCCChHHHHHHHHHHhhchhccCch-----------------------------hHHHHHHHHHHHHcCCHHHH
Q 002379 718 ADTN-LDPESSTYVIQLLEEALRCPSDGLRK-----------------------------GQALNNLGSIYVECGKLDQA 767 (929)
Q Consensus 718 ~~~~-~~~~~~~~a~~~~e~Al~~~~~al~~-----------------------------~~a~~~lg~~~~~~g~~~eA 767 (929)
.... ...+........|++-...+.++..+ +..+.++-.+|....+.+-.
T Consensus 83 g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i 162 (517)
T PF12569_consen 83 GLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAII 162 (517)
T ss_pred hhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHH
Confidence 4332 33445566666666665555443110 23444444444433332222
Q ss_pred HHHHHHHH---cC------------CCH----HHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHh----hhC
Q 002379 768 ENCYINAL---DI------------KHT----RAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS----EYS 824 (929)
Q Consensus 768 ~~~~~~al---~~------------~~~----~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg----~~g 824 (929)
...+.... +. .++ .+++.+|..|...|++++|+++.+++|+..|..++.|...| ..|
T Consensus 163 ~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G 242 (517)
T PF12569_consen 163 ESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAG 242 (517)
T ss_pred HHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCC
Confidence 22222222 11 112 25688999999999999999999999999999999999988 679
Q ss_pred CHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCc------hHHHHH--HHHHHHcCCHH
Q 002379 825 DREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFK--PDL------QMLHLR--AAFYESIGDLT 894 (929)
Q Consensus 825 ~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~--p~~------~~~~~l--a~~~~~~g~~~ 894 (929)
++.+|...++.|-.+|+.+-..-...+..+++.|+.++|.+.+..-...+ |.. ..|+.. |.+|.+.|++.
T Consensus 243 ~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~ 322 (517)
T PF12569_consen 243 DLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYG 322 (517)
T ss_pred CHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 99999999999999999999999999999999999999999987765544 211 144533 99999999999
Q ss_pred HHHHHHHHHhcc
Q 002379 895 SAIRDSQAALCL 906 (929)
Q Consensus 895 ~A~~~~~~al~l 906 (929)
.|+..|..+.+.
T Consensus 323 ~ALk~~~~v~k~ 334 (517)
T PF12569_consen 323 LALKRFHAVLKH 334 (517)
T ss_pred HHHHHHHHHHHH
Confidence 999999988875
No 104
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.33 E-value=7.1e-08 Score=106.49 Aligned_cols=412 Identities=13% Similarity=0.030 Sum_probs=254.2
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccC---CHhHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Q 002379 502 VDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL---SVDCLELRAWLFIAADDYESALRDTLALLALE 578 (929)
Q Consensus 502 ~~~~kal~l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~---~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~ 578 (929)
.+|++++-.-.+-+..|......++.+|+...-...|++++..-| ....|-..-......+-.+-++..|++-|+..
T Consensus 89 ~c~er~lv~mHkmpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~ 168 (835)
T KOG2047|consen 89 NCFERCLVFMHKMPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVA 168 (835)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcC
Confidence 456666665566667777777777777777777777777775554 22334444444455566667777777777777
Q ss_pred CCchhhhccccHHHHHHHHHHhhcccchHHHHHHh----------------------hhccccc-cc---cccHHHHHHH
Q 002379 579 SNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKL----------------------YDRWSSV-DD---IGSLAVINQM 632 (929)
Q Consensus 579 p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l----------------------~~~~~~~-~~---~~~l~~~~~a 632 (929)
|....- + + ......+++++|...+.. .+..+.. +. +.--+.+...
T Consensus 169 P~~~ee------y--i-e~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~g 239 (835)
T KOG2047|consen 169 PEAREE------Y--I-EYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGG 239 (835)
T ss_pred HHHHHH------H--H-HHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhh
Confidence 766410 0 0 011122233333221111 0100000 00 0012233444
Q ss_pred HhcCCCC-hHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC---chHHHH-----HHHHHHHHHcC-------------CH
Q 002379 633 LINDPGK-SFLRFRQSLLLLRLNCQKAAMRCLRLARNHSS---SEHERL-----VYEGWILYDTG-------------HR 690 (929)
Q Consensus 633 l~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p---~~~~~~-----~~lg~~~~~~g-------------~~ 690 (929)
+..-++. ..+|..+|..|.+.|.+++|...|+++++.-- +...++ +.-..+...++ +.
T Consensus 240 i~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl 319 (835)
T KOG2047|consen 240 IRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDL 319 (835)
T ss_pred cccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhH
Confidence 4444443 45789999999999999999999999987532 222222 11111111111 23
Q ss_pred HHHHHHHHHHHhhccch-HHH------HHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCc---hhHHHHHHHHHHHH
Q 002379 691 EEALSRAEKSISIERTF-EAF------FLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLR---KGQALNNLGSIYVE 760 (929)
Q Consensus 691 ~eA~~~~~~al~~~p~~-~~~------~~l~~~l~~~~~~~~~~~~a~~~~e~Al~~~~~al~---~~~a~~~lg~~~~~ 760 (929)
+-....|+..+...|-. ... .+....+....+..++....+.-|.+|+....-... ++..|..+|..|..
T Consensus 320 ~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~ 399 (835)
T KOG2047|consen 320 ELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYEN 399 (835)
T ss_pred HHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHh
Confidence 44455566655443322 000 011222223333444555666677777765443322 35889999999999
Q ss_pred cCCHHHHHHHHHHHHcCCC------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCC------------------HHH
Q 002379 761 CGKLDQAENCYINALDIKH------TRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYS------------------ASA 816 (929)
Q Consensus 761 ~g~~~eA~~~~~~al~~~~------~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------------------~~~ 816 (929)
.|+.+.|...|+++.+... ..+|..-|..-....+++.|+..++++...-.+. ..+
T Consensus 400 ~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlki 479 (835)
T KOG2047|consen 400 NGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKI 479 (835)
T ss_pred cCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHH
Confidence 9999999999999999832 3588899999999999999999999987542221 112
Q ss_pred HHHHh----hhCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCch---HHH-HHHHH--
Q 002379 817 FEKRS----EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQ---MLH-LRAAF-- 886 (929)
Q Consensus 817 ~~~lg----~~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~---~~~-~la~~-- 886 (929)
|...+ .+|-++.....|++.+.+.-..|....+.|..+....-+++|.+.|++.+.+.+-.. .|. ++-.+
T Consensus 480 Ws~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~ 559 (835)
T KOG2047|consen 480 WSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIK 559 (835)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHH
Confidence 33333 458888889999999999888899999999999999999999999999998875432 222 33222
Q ss_pred HHHcCCHHHHHHHHHHHhccCCCC-H-HHHHHHHHHHh
Q 002379 887 YESIGDLTSAIRDSQAALCLDPNH-M-ETLDLYNRARD 922 (929)
Q Consensus 887 ~~~~g~~~~A~~~~~~al~l~P~~-~-~a~~~~~~l~~ 922 (929)
-+..-..+.|...|++||+..|.. . -.+.+|+++++
T Consensus 560 rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEE 597 (835)
T KOG2047|consen 560 RYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEE 597 (835)
T ss_pred HhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 333447889999999999988721 1 23445555554
No 105
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.31 E-value=4.1e-10 Score=133.63 Aligned_cols=154 Identities=12% Similarity=0.008 Sum_probs=129.5
Q ss_pred HhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccC-CHhHHHHHHHHHHHhccHHHHHHHHHHHHhhcCCchhhhc
Q 002379 508 SELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHG 586 (929)
Q Consensus 508 l~l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 586 (929)
...+|.+..++..+...+...+++++|+..++.+++..| .+..++..|.++.+.+++..|... .++...+.+.
T Consensus 24 ~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~---- 97 (906)
T PRK14720 24 NNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNL---- 97 (906)
T ss_pred ccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhccccc----
Confidence 345788999999999999999999999999999998888 677788889999999998888877 7777766665
Q ss_pred cccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 002379 587 RVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLA 666 (929)
Q Consensus 587 ~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~a 666 (929)
.| .+ ++.+.+.+...+.+..+++.+|.+|-.+|+.++|...|+++
T Consensus 98 ----------------~~-~~------------------ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~ 142 (906)
T PRK14720 98 ----------------KW-AI------------------VEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERL 142 (906)
T ss_pred ----------------ch-hH------------------HHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 22 12 22224455556777789999999999999999999999999
Q ss_pred HhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 002379 667 RNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISI 703 (929)
Q Consensus 667 l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~ 703 (929)
++.+|+++.++.++|..|... +.++|+.++.+|+..
T Consensus 143 L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~ 178 (906)
T PRK14720 143 VKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR 178 (906)
T ss_pred HhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH
Confidence 999999999999999999999 999999999998863
No 106
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.27 E-value=2.4e-10 Score=115.30 Aligned_cols=159 Identities=17% Similarity=0.085 Sum_probs=131.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHh----hhCCHHHHH
Q 002379 755 GSIYVECGKLDQAENCYINALDIKHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS----EYSDREMAK 830 (929)
Q Consensus 755 g~~~~~~g~~~eA~~~~~~al~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg----~~g~~~~A~ 830 (929)
+..|+..|+++......++...-. ..+...++.++++..++++++.+|++...|..+| ..|++++|+
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~---------~~~~~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL---------HQFASQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc---------ccccCchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 456788888888655543221110 0111366778999999999999999999999999 679999999
Q ss_pred HHHHHHHhcCCCCcHHHHHHHHHH-HhcCC--HHHHHHHHHHHHhcCCCchHHH-HHHHHHHHcCCHHHHHHHHHHHhcc
Q 002379 831 NDLNMATQLDPLRTYPYRYRAAVL-MDDQK--EVEAVEELSKAIAFKPDLQMLH-LRAAFYESIGDLTSAIRDSQAALCL 906 (929)
Q Consensus 831 ~~~~~al~l~p~~~~~~~~la~~~-~~~g~--~~eA~~~l~kal~~~p~~~~~~-~la~~~~~~g~~~~A~~~~~~al~l 906 (929)
..|+++++++|+++.++..+|.++ ...|+ +++|.+.++++++.+|++...+ ++|..+...|++++|+..|++++++
T Consensus 94 ~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 94 LAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 999999999999999999999975 67777 5999999999999999997655 7799999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHh
Q 002379 907 DPNHMETLDLYNRARD 922 (929)
Q Consensus 907 ~P~~~~a~~~~~~l~~ 922 (929)
+|.+.+-......|+.
T Consensus 174 ~~~~~~r~~~i~~i~~ 189 (198)
T PRK10370 174 NSPRVNRTQLVESINM 189 (198)
T ss_pred CCCCccHHHHHHHHHH
Confidence 8887766666666554
No 107
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.26 E-value=1.1e-10 Score=111.63 Aligned_cols=55 Identities=11% Similarity=0.013 Sum_probs=27.4
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Q 002379 630 NQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWIL 684 (929)
Q Consensus 630 ~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~ 684 (929)
.+++..+|+++.+++.+|.++..+|++++|+..|+++++..|+++..+..+|.+.
T Consensus 82 ~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~ 136 (144)
T PRK15359 82 GHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQ 136 (144)
T ss_pred HHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 3333333444444555555555555555555555555555555555555544443
No 108
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.26 E-value=1.4e-08 Score=128.60 Aligned_cols=366 Identities=17% Similarity=0.059 Sum_probs=241.3
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhcccCCHhHHHHHHHHHHHhccHHHHHHHHHHHHh-hcCCchhhhccccHHHHHHH
Q 002379 518 YKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLA-LESNYMMFHGRVSGDHLVKL 596 (929)
Q Consensus 518 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~~~a~~ll~~ 596 (929)
+...+..+...|++.+|+..+..+-............++.....|++..+...+..+-. ....++ ......+.
T Consensus 344 h~raa~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~------~l~~~~a~ 417 (903)
T PRK04841 344 HRAAAEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENP------RLVLLQAW 417 (903)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCc------chHHHHHH
Confidence 34445567778888888876666532211223344556666777777776665544310 011122 23344556
Q ss_pred HHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCC---------ChHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 002379 597 LNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPG---------KSFLRFRQSLLLLRLNCQKAAMRCLRLAR 667 (929)
Q Consensus 597 ~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~~p~---------~~~~~~~lg~~~~~~g~~~~A~~~l~~al 667 (929)
+....+++++|..++ .++...-+. .......++.++...|++++|...+++++
T Consensus 418 ~~~~~g~~~~a~~~l------------------~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al 479 (903)
T PRK04841 418 LAQSQHRYSEVNTLL------------------ARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELAL 479 (903)
T ss_pred HHHHCCCHHHHHHHH------------------HHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 666777777776655 332221110 12344557788889999999999999998
Q ss_pred hcCCch-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch-------HHHHHHHHHHHhcCCCCCChHHHHHHHH
Q 002379 668 NHSSSE-----HERLVYEGWILYDTGHREEALSRAEKSISIERTF-------EAFFLKAYILADTNLDPESSTYVIQLLE 735 (929)
Q Consensus 668 ~~~p~~-----~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-------~~~~~l~~~l~~~~~~~~~~~~a~~~~e 735 (929)
+..+.. ..+...+|.++...|++++|...+++++...... .....++..+...| +...+...++
T Consensus 480 ~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G----~~~~A~~~~~ 555 (903)
T PRK04841 480 AELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQG----FLQAAYETQE 555 (903)
T ss_pred hcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCC----CHHHHHHHHH
Confidence 854432 2345678889999999999999999998764432 22334444444444 5555555555
Q ss_pred HHhhchhccCc-----hhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC----C---CHHHHHHHHHHHHHhCCHHHHHHHH
Q 002379 736 EALRCPSDGLR-----KGQALNNLGSIYVECGKLDQAENCYINALDI----K---HTRAHQGLARVYYLKNELKAAYDEM 803 (929)
Q Consensus 736 ~Al~~~~~al~-----~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~----~---~~~a~~~la~~~~~~g~~~~A~~~~ 803 (929)
+++......-. ....+..+|.++...|++++|...+.+++.. . ...++..+|.++...|++++|...+
T Consensus 556 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l 635 (903)
T PRK04841 556 KAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYL 635 (903)
T ss_pred HHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 55554443211 1234567899999999999999999999876 1 1346677899999999999999999
Q ss_pred HHHHHHccCCH---HHH--------HHHhhhCCHHHHHHHHHHHHhcCCCCcH----HHHHHHHHHHhcCCHHHHHHHHH
Q 002379 804 TKLLEKAQYSA---SAF--------EKRSEYSDREMAKNDLNMATQLDPLRTY----PYRYRAAVLMDDQKEVEAVEELS 868 (929)
Q Consensus 804 ~~al~~~p~~~---~~~--------~~lg~~g~~~~A~~~~~~al~l~p~~~~----~~~~la~~~~~~g~~~eA~~~l~ 868 (929)
.++....+... ... ......|+.+.|...+.......+.... .+..+|.++...|++++|+..++
T Consensus 636 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ 715 (903)
T PRK04841 636 NRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILE 715 (903)
T ss_pred HHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99987644321 110 1111457888888888776653332222 24678999999999999999999
Q ss_pred HHHhcCCCc------h-HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCH
Q 002379 869 KAIAFKPDL------Q-MLHLRAAFYESIGDLTSAIRDSQAALCLDPNHM 911 (929)
Q Consensus 869 kal~~~p~~------~-~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~ 911 (929)
+++...... . ....+|.++...|+.++|...+++|+++.....
T Consensus 716 ~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~g 765 (903)
T PRK04841 716 ELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRTG 765 (903)
T ss_pred HHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCccc
Confidence 998763221 1 223669999999999999999999999865543
No 109
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.25 E-value=5.7e-11 Score=123.65 Aligned_cols=266 Identities=15% Similarity=0.099 Sum_probs=164.9
Q ss_pred HHhhHHHHhcccHHHHHHHHHHHHhcCccccHHHHHHHHHHhchHHHHHHHHHhhhccCCCchhhhHHHHHHhhhhHHHH
Q 002379 423 HQLGCVMFEREEYKDACYYFEAAADAGHIYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNLGREKIV 502 (929)
Q Consensus 423 ~~lG~~~~~~g~y~~A~~~f~~al~~~~~~~~a~la~~~~~~g~a~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Ai~ 502 (929)
..-|.-+++.|++...+..|+.|++.+.+... .+..+
T Consensus 21 alEGERLck~gdcraGv~ff~aA~qvGTeDl~-tLSAI------------------------------------------ 57 (639)
T KOG1130|consen 21 ALEGERLCKMGDCRAGVDFFKAALQVGTEDLS-TLSAI------------------------------------------ 57 (639)
T ss_pred HHHHHHHHhccchhhhHHHHHHHHHhcchHHH-HHHHH------------------------------------------
Confidence 34677889999999999999999998655322 22223
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHH------HhcccC-CHhHHHHHHHHHHHhccHHHHHHHHHHHH
Q 002379 503 DLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDR------IIVFKL-SVDCLELRAWLFIAADDYESALRDTLALL 575 (929)
Q Consensus 503 ~~~kal~l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~------al~~~~-~~~~~~~~a~~~~~~g~~~~A~~~~~~al 575 (929)
|..+|++|+..++|++|+++-.. .+.-+. .+..--++|..+--.|.|++|+....+-+
T Consensus 58 ---------------YsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlKv~G~fdeA~~cc~rhL 122 (639)
T KOG1130|consen 58 ---------------YSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLKVKGAFDEALTCCFRHL 122 (639)
T ss_pred ---------------HHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhhhhcccchHHHHHHHHh
Confidence 34445555555555555544322 111111 22233456677777777777777777666
Q ss_pred hhcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHHHHhcC
Q 002379 576 ALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNC 655 (929)
Q Consensus 576 ~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 655 (929)
.+...-..-....++++.+|.+|...|..-.-. +.+ +......++ ...
T Consensus 123 d~areLgDrv~e~RAlYNlgnvYhakGk~~g~~----------~pe------------e~g~f~~ev----------~~a 170 (639)
T KOG1130|consen 123 DFARELGDRVLESRALYNLGNVYHAKGKCTGLE----------APE------------EKGAFNAEV----------TSA 170 (639)
T ss_pred HHHHHHhHHHhhhHHHhhhhhhhhhcccccCCC----------Chh------------hcccccHHH----------HHH
Confidence 554333322333377788888887766532210 000 000000000 011
Q ss_pred HHHHHHHHHHHHhcCCc------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHHHHHhcCCCCCChHH
Q 002379 656 QKAAMRCLRLARNHSSS------EHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTY 729 (929)
Q Consensus 656 ~~~A~~~l~~al~~~p~------~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~l~~~l~~~~~~~~~~~~ 729 (929)
++.|.+.|..-+++... ...++-++|..|+-+|+|+.|+..-+.-+.+...+ .
T Consensus 171 l~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~ef----------G----------- 229 (639)
T KOG1130|consen 171 LENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEF----------G----------- 229 (639)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHh----------h-----------
Confidence 23444444444433222 24567788999999999999999888777665544 0
Q ss_pred HHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC----C----CHHHHHHHHHHHHHhCCHHHHHH
Q 002379 730 VIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI----K----HTRAHQGLARVYYLKNELKAAYD 801 (929)
Q Consensus 730 a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~----~----~~~a~~~la~~~~~~g~~~~A~~ 801 (929)
++|.+ -.++.++|+++...|+++.|+++|+..+.+ + ..+.-+.||..|....++++|+.
T Consensus 230 -----DrAae--------RRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~ 296 (639)
T KOG1130|consen 230 -----DRAAE--------RRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAIT 296 (639)
T ss_pred -----hHHHH--------HHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 11111 356889999999999999999999987765 2 23577889999999999999999
Q ss_pred HHHHHHHHccC
Q 002379 802 EMTKLLEKAQY 812 (929)
Q Consensus 802 ~~~~al~~~p~ 812 (929)
++.+-+.+...
T Consensus 297 Yh~rHLaIAqe 307 (639)
T KOG1130|consen 297 YHQRHLAIAQE 307 (639)
T ss_pred HHHHHHHHHHH
Confidence 99988877543
No 110
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.25 E-value=4.1e-08 Score=112.24 Aligned_cols=126 Identities=17% Similarity=0.068 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch-HHHHHHHHHHHh
Q 002379 641 FLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILAD 719 (929)
Q Consensus 641 ~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~~~~~l~~~l~~ 719 (929)
++++.++..|...|++++|+.++++++++.|..++.++..|.++...|++.+|...++.+-.+++.+ -.-...+..+.+
T Consensus 195 w~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LR 274 (517)
T PF12569_consen 195 WTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLR 274 (517)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHH
Confidence 4668899999999999999999999999999999999999999999999999999999999999988 333344455556
Q ss_pred cCCCCCChHHHHHHHHHHhhchhccCch-------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHcC
Q 002379 720 TNLDPESSTYVIQLLEEALRCPSDGLRK-------------GQALNNLGSIYVECGKLDQAENCYINALDI 777 (929)
Q Consensus 720 ~~~~~~~~~~a~~~~e~Al~~~~~al~~-------------~~a~~~lg~~~~~~g~~~eA~~~~~~al~~ 777 (929)
.+ ..++|.+......++ .......|.+|.+.|++..|+..|....+.
T Consensus 275 a~-----------~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 275 AG-----------RIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKH 334 (517)
T ss_pred CC-----------CHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 66 677777665544331 133356799999999999999999988776
No 111
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.24 E-value=1.3e-06 Score=96.81 Aligned_cols=434 Identities=11% Similarity=-0.027 Sum_probs=255.0
Q ss_pred HHHHHHHHhhHHHHhcccHHHHHHHHHHHHhcCccccH-HHHHHHHHHhchHHHHHHHHHhhhccCCCchhhhHHHHHHh
Q 002379 417 QRMLALHQLGCVMFEREEYKDACYYFEAAADAGHIYSL-AGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYN 495 (929)
Q Consensus 417 ~~a~~~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~~~-a~la~~~~~~g~a~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 495 (929)
+.+..+..|+..|.+.|.++.|...|+++++.--.... ..+...|....+...+...-...... ....|...-...+.
T Consensus 246 q~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~-~n~ed~~dl~~~~a 324 (835)
T KOG2047|consen 246 QLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEES-GNEEDDVDLELHMA 324 (835)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcc-cChhhhhhHHHHHH
Confidence 44667788999999999999999999999987333222 23344444444322222211000000 01111111000000
Q ss_pred hhh-----HHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcc-cC-----C-HhHHHHHHHHHHHhcc
Q 002379 496 LGR-----EKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVF-KL-----S-VDCLELRAWLFIAADD 563 (929)
Q Consensus 496 ~~~-----~Ai~~~~kal~l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~-~~-----~-~~~~~~~a~~~~~~g~ 563 (929)
..+ .-+-.=.-++..||++..-|..+-.+ ..|+..+-+..|..++.. +| + ...+...|..|...|+
T Consensus 325 ~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~ 402 (835)
T KOG2047|consen 325 RFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGD 402 (835)
T ss_pred HHHHHHhccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCc
Confidence 000 11111123466788888888776544 467777778888777632 33 2 2346777888888888
Q ss_pred HHHHHHHHHHHHhhcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHH---hcCCCCh
Q 002379 564 YESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQML---INDPGKS 640 (929)
Q Consensus 564 ~~~A~~~~~~al~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al---~~~p~~~ 640 (929)
.+.|...|+++.+..-.... .....+..-+.......+++.|...++....-..... +..|.... ..--+..
T Consensus 403 l~~aRvifeka~~V~y~~v~--dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~---~~~yd~~~pvQ~rlhrSl 477 (835)
T KOG2047|consen 403 LDDARVIFEKATKVPYKTVE--DLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPE---LEYYDNSEPVQARLHRSL 477 (835)
T ss_pred HHHHHHHHHHhhcCCccchH--HHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchh---hhhhcCCCcHHHHHHHhH
Confidence 88888888888876433221 1113344444455555666667555522111000000 00000000 0000234
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc--ch-HHHHHHHHHH
Q 002379 641 FLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIER--TF-EAFFLKAYIL 717 (929)
Q Consensus 641 ~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p--~~-~~~~~l~~~l 717 (929)
.+|...+......|-++.....|++.+++---.|..-.+.|..+....-+++|.+.|++.+.+.+ .- +.|.....-.
T Consensus 478 kiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkf 557 (835)
T KOG2047|consen 478 KIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKF 557 (835)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHH
Confidence 57788888888999999999999999999888899999999999999999999999999999864 33 5555444333
Q ss_pred HhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--
Q 002379 718 ADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIKHTRAHQGLARVYYLKNE-- 795 (929)
Q Consensus 718 ~~~~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~~~a~~~la~~~~~~g~-- 795 (929)
.. .......+.+...+++|++... ....-..|...+..-..-|--..|+..|++|-..-+..-.+.+-++|...-.
T Consensus 558 i~-rygg~klEraRdLFEqaL~~Cp-p~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~ 635 (835)
T KOG2047|consen 558 IK-RYGGTKLERARDLFEQALDGCP-PEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEI 635 (835)
T ss_pred HH-HhcCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 32 2223334444445555554111 0000144555566666678888899999998777444433333334332211
Q ss_pred --HHHHHHHHHHHHHHccCCHHHH--HHHh----hhCCHHHHHHHHHHHHhcC-C-CCcHHHHHHHHHHHhcCCH
Q 002379 796 --LKAAYDEMTKLLEKAQYSASAF--EKRS----EYSDREMAKNDLNMATQLD-P-LRTYPYRYRAAVLMDDQKE 860 (929)
Q Consensus 796 --~~~A~~~~~~al~~~p~~~~~~--~~lg----~~g~~~~A~~~~~~al~l~-p-~~~~~~~~la~~~~~~g~~ 860 (929)
.......|+++|+.-|+...-- ...+ ..|..+.|...|.-+-++- | .++..|...-..-.+.|+-
T Consensus 636 yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGne 710 (835)
T KOG2047|consen 636 YGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNE 710 (835)
T ss_pred hCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCH
Confidence 2344677888888888754321 1222 5788899999998888764 4 4566676666677778883
No 112
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.24 E-value=6e-11 Score=120.50 Aligned_cols=107 Identities=22% Similarity=0.253 Sum_probs=97.4
Q ss_pred hhCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHH-HHHHHHHHcCCHHHHHHHH
Q 002379 822 EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLH-LRAAFYESIGDLTSAIRDS 900 (929)
Q Consensus 822 ~~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~-~la~~~~~~g~~~~A~~~~ 900 (929)
+.++|.+|+..|.+||+++|+++..|.++|.+|.++|.++.|++.++.++.++|.....| .+|.+|..+|++++|++.|
T Consensus 93 ~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~ay 172 (304)
T KOG0553|consen 93 KNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIEAY 172 (304)
T ss_pred HhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHHH
Confidence 457888888889999999999999999999999999999999999999999999998777 5699999999999999999
Q ss_pred HHHhccCCCCHHHHHHHHHHHhhhhhhc
Q 002379 901 QAALCLDPNHMETLDLYNRARDQASHQQ 928 (929)
Q Consensus 901 ~~al~l~P~~~~a~~~~~~l~~~~~~~~ 928 (929)
+++|+++|++...+..+..++.+..+++
T Consensus 173 kKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 173 KKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999888776654
No 113
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.19 E-value=2e-09 Score=107.70 Aligned_cols=179 Identities=20% Similarity=0.104 Sum_probs=149.6
Q ss_pred cHHHHHHHHHHHHhhcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHH
Q 002379 563 DYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFL 642 (929)
Q Consensus 563 ~~~~A~~~~~~al~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~~p~~~~~ 642 (929)
+...+...+-+....+|++. .+ ..+...+...|+-+.+...+ .+....+|.+..+
T Consensus 48 q~~~a~~al~~~~~~~p~d~------~i-~~~a~a~~~~G~a~~~l~~~------------------~~~~~~~~~d~~l 102 (257)
T COG5010 48 QTQGAAAALGAAVLRNPEDL------SI-AKLATALYLRGDADSSLAVL------------------QKSAIAYPKDREL 102 (257)
T ss_pred hhhHHHHHHHHHHhcCcchH------HH-HHHHHHHHhcccccchHHHH------------------hhhhccCcccHHH
Confidence 33346666666777788887 44 55666666666666553333 7777788899888
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHHHHHhcCC
Q 002379 643 RFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNL 722 (929)
Q Consensus 643 ~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~l~~~l~~~~~ 722 (929)
...+|....+.|++..|+..++++....|+++++|..+|.+|.+.|++++|...|.+++++.|+.
T Consensus 103 l~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~--------------- 167 (257)
T COG5010 103 LAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNE--------------- 167 (257)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCC---------------
Confidence 88899999999999999999999999999999999999999999999999999999999998877
Q ss_pred CCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHhCCHHHHH
Q 002379 723 DPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI--KHTRAHQGLARVYYLKNELKAAY 800 (929)
Q Consensus 723 ~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~--~~~~a~~~la~~~~~~g~~~~A~ 800 (929)
+.+.+|+|..+.-.|+++.|..++..+... .+..+..+++.+....|++++|.
T Consensus 168 -------------------------p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~ 222 (257)
T COG5010 168 -------------------------PSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAE 222 (257)
T ss_pred -------------------------chhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHH
Confidence 566899999999999999999999999887 56788999999999999999998
Q ss_pred HHHHHH
Q 002379 801 DEMTKL 806 (929)
Q Consensus 801 ~~~~~a 806 (929)
+...+-
T Consensus 223 ~i~~~e 228 (257)
T COG5010 223 DIAVQE 228 (257)
T ss_pred hhcccc
Confidence 865443
No 114
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.19 E-value=4.7e-10 Score=113.26 Aligned_cols=115 Identities=18% Similarity=0.141 Sum_probs=90.5
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHH-HHcCC--HHHHHHHHHHHHh
Q 002379 626 LAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWIL-YDTGH--REEALSRAEKSIS 702 (929)
Q Consensus 626 l~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~-~~~g~--~~eA~~~~~~al~ 702 (929)
+..++++++.+|+++..|..+|.+|...|++++|+..|+++++++|+++.++..+|.++ ...|+ +++|...++++++
T Consensus 59 i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~ 138 (198)
T PRK10370 59 LQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALA 138 (198)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 44557888888888888888888888888888888888888888888888888888864 56676 4888888888888
Q ss_pred hccchHHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCH
Q 002379 703 IERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIKHT 780 (929)
Q Consensus 703 ~~p~~~~~~~l~~~l~~~~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~~ 780 (929)
.+|++ ..++.++|..+...|++++|+.+|+++++..++
T Consensus 139 ~dP~~----------------------------------------~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~ 176 (198)
T PRK10370 139 LDANE----------------------------------------VTALMLLASDAFMQADYAQAIELWQKVLDLNSP 176 (198)
T ss_pred hCCCC----------------------------------------hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 88877 445777777777888888888888888777443
No 115
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.18 E-value=1.8e-09 Score=128.28 Aligned_cols=222 Identities=10% Similarity=-0.044 Sum_probs=173.7
Q ss_pred hcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHH
Q 002379 634 INDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLK 713 (929)
Q Consensus 634 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~l 713 (929)
..+|.+..++..+...+...|++++|++..+.+++.+|+....++.+|.++.+.+++.+|... .++.+.+...-|...
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~v 102 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIV 102 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHH
Confidence 447899999999999999999999999999999999999999999999999999999998888 777766554211111
Q ss_pred HHHHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHH
Q 002379 714 AYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI--KHTRAHQGLARVYY 791 (929)
Q Consensus 714 ~~~l~~~~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~--~~~~a~~~la~~~~ 791 (929)
.+.+...+. ......+++.+|.+|-.+|++++|...|+++++. +++.++.++|..|.
T Consensus 103 e~~~~~i~~---------------------~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~a 161 (906)
T PRK14720 103 EHICDKILL---------------------YGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYE 161 (906)
T ss_pred HHHHHHHHh---------------------hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHH
Confidence 111111110 0011257899999999999999999999999999 56789999999999
Q ss_pred HhCCHHHHHHHHHHHHHHccCCHHHHHHHhhhCCHHHHHHHHHHHHhcCCCCcHHHH--------HHH------------
Q 002379 792 LKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYR--------YRA------------ 851 (929)
Q Consensus 792 ~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~g~~~~A~~~~~~al~l~p~~~~~~~--------~la------------ 851 (929)
.. +.++|..++.+++...- ...++.++...+.+.+..+|.+.+.+. .++
T Consensus 162 e~-dL~KA~~m~~KAV~~~i----------~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~ 230 (906)
T PRK14720 162 EE-DKEKAITYLKKAIYRFI----------KKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLY 230 (906)
T ss_pred Hh-hHHHHHHHHHHHHHHHH----------hhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHH
Confidence 99 99999999999988721 224668888889999999997766532 223
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCchH-HHHHHHHHHH
Q 002379 852 AVLMDDQKEVEAVEELSKAIAFKPDLQM-LHLRAAFYES 889 (929)
Q Consensus 852 ~~~~~~g~~~eA~~~l~kal~~~p~~~~-~~~la~~~~~ 889 (929)
..|...++|++++..++.+++.+|++.- .+.++.+|..
T Consensus 231 ~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~~ 269 (906)
T PRK14720 231 EPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYKE 269 (906)
T ss_pred HHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHHH
Confidence 5666777888999999999999887754 4466777773
No 116
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.18 E-value=3.7e-09 Score=104.47 Aligned_cols=169 Identities=17% Similarity=0.105 Sum_probs=148.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHh----h
Q 002379 749 QALNNLGSIYVECGKLDQAENCYINALDI--KHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS----E 822 (929)
Q Consensus 749 ~a~~~lg~~~~~~g~~~eA~~~~~~al~~--~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg----~ 822 (929)
..+-....+....|+.+.|..++++.... ++.++....|..+...|++++|+++|+..++.+|.+..++-..- .
T Consensus 53 ~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka 132 (289)
T KOG3060|consen 53 TLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKA 132 (289)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHH
Confidence 34555667778899999999999987665 67788888899999999999999999999999999988776433 5
Q ss_pred hCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHH-HHHHHHHcC---CHHHHHH
Q 002379 823 YSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLHL-RAAFYESIG---DLTSAIR 898 (929)
Q Consensus 823 ~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~-la~~~~~~g---~~~~A~~ 898 (929)
.|+.-+|++.+...++..+.+.++|..++.+|...|+|++|.-++++.+-+.|.++.++. +|.+++-+| ++.-|.+
T Consensus 133 ~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ark 212 (289)
T KOG3060|consen 133 QGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARK 212 (289)
T ss_pred cCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 788899999999999999999999999999999999999999999999999999999884 488888776 6778999
Q ss_pred HHHHHhccCCCCHHHHHHH
Q 002379 899 DSQAALCLDPNHMETLDLY 917 (929)
Q Consensus 899 ~~~~al~l~P~~~~a~~~~ 917 (929)
+|.++++++|.+..++..+
T Consensus 213 yy~~alkl~~~~~ral~GI 231 (289)
T KOG3060|consen 213 YYERALKLNPKNLRALFGI 231 (289)
T ss_pred HHHHHHHhChHhHHHHHHH
Confidence 9999999999776665543
No 117
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.17 E-value=1.6e-08 Score=101.68 Aligned_cols=270 Identities=14% Similarity=0.075 Sum_probs=180.7
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccC-CHhHHHHHHHHHHHhccHHHHHHHHHHHHh
Q 002379 498 REKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLALLA 576 (929)
Q Consensus 498 ~~Ai~~~~kal~l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~~g~~~~A~~~~~~al~ 576 (929)
..+|+++..-.+.+|.+-..+..+|.||+...+|..|..+|++.-...| ........+..+++.+.+..|++.......
T Consensus 27 ~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D 106 (459)
T KOG4340|consen 27 ADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLD 106 (459)
T ss_pred HHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcC
Confidence 3889999999999999999999999999999999999999999987776 333445568888999999999988776653
Q ss_pred hcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCC--CChHHHHHHHHHHHHhc
Q 002379 577 LESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDP--GKSFLRFRQSLLLLRLN 654 (929)
Q Consensus 577 ~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~~p--~~~~~~~~lg~~~~~~g 654 (929)
. ..... +...+-+.+....+++..+ +..++.-| +++....+.|-+.++.|
T Consensus 107 ~----~~L~~--~~lqLqaAIkYse~Dl~g~----------------------rsLveQlp~en~Ad~~in~gCllykeg 158 (459)
T KOG4340|consen 107 N----PALHS--RVLQLQAAIKYSEGDLPGS----------------------RSLVEQLPSENEADGQINLGCLLYKEG 158 (459)
T ss_pred C----HHHHH--HHHHHHHHHhcccccCcch----------------------HHHHHhccCCCccchhccchheeeccc
Confidence 2 21111 4444555555555555544 34444445 57788899999999999
Q ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----ccchHHHHHHHHHHHhcCCCCCChHHH
Q 002379 655 CQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISI----ERTFEAFFLKAYILADTNLDPESSTYV 730 (929)
Q Consensus 655 ~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~----~p~~~~~~~l~~~l~~~~~~~~~~~~a 730 (929)
++++|++-|+.|++...-++-.-++++.++++.|+++.|+++..+.++. .|.. +.-....+.+.......
T Consensus 159 qyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPEl------gIGm~tegiDvrsvgNt 232 (459)
T KOG4340|consen 159 QYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPEL------GIGMTTEGIDVRSVGNT 232 (459)
T ss_pred cHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCcc------CccceeccCchhcccch
Confidence 9999999999999999999999999999999999999999988777654 3433 10011111111111111
Q ss_pred HHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 002379 731 IQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI----KHTRAHQGLARVYYLKNELKAAYDEMTKL 806 (929)
Q Consensus 731 ~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~----~~~~a~~~la~~~~~~g~~~~A~~~~~~a 806 (929)
+...+.|+ .++++..+.++++.|+++.|.+.+...--. -+|..+.+++.. -..+++-+...-+.-.
T Consensus 233 ~~lh~Sal---------~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFL 302 (459)
T KOG4340|consen 233 LVLHQSAL---------VEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFL 302 (459)
T ss_pred HHHHHHHH---------HHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHH
Confidence 11222222 256666777777777777777665443222 122344444433 1233444444444445
Q ss_pred HHHcc
Q 002379 807 LEKAQ 811 (929)
Q Consensus 807 l~~~p 811 (929)
+.++|
T Consensus 303 L~~nP 307 (459)
T KOG4340|consen 303 LQQNP 307 (459)
T ss_pred HhcCC
Confidence 55554
No 118
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.17 E-value=7.3e-10 Score=124.07 Aligned_cols=221 Identities=15% Similarity=0.075 Sum_probs=182.5
Q ss_pred CCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccCCHhHHHHHHHHHHHhccHHHHHHHHHHHHhhcCCchhhhccccHH
Q 002379 512 PTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGD 591 (929)
Q Consensus 512 P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~ 591 (929)
|........+|..+...|-...|+..|++. ..+.....||...|+..+|.....+-++ .|+++ ..+
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erl-------emw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~------~ly 460 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERL-------EMWDPVILCYLLLGQHGKAEEINRQELE-KDPDP------RLY 460 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhH-------HHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcc------hhH
Confidence 445556678899999999999999999986 3455678889999999999999999998 56666 566
Q ss_pred HHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Q 002379 592 HLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSS 671 (929)
Q Consensus 592 ~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p 671 (929)
..+|.+..+..-|++|.++. +-.++.+...+|....+.++|.++.++++..++++|
T Consensus 461 c~LGDv~~d~s~yEkawEls------------------------n~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~np 516 (777)
T KOG1128|consen 461 CLLGDVLHDPSLYEKAWELS------------------------NYISARAQRSLALLILSNKDFSEADKHLERSLEINP 516 (777)
T ss_pred HHhhhhccChHHHHHHHHHh------------------------hhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCc
Confidence 77887777765666553333 122344666777777888999999999999999999
Q ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHH
Q 002379 672 SEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQAL 751 (929)
Q Consensus 672 ~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~l~~~l~~~~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~ 751 (929)
-....|+.+|.+..+.++++.|...|.+++.++|++ ..+|
T Consensus 517 lq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~----------------------------------------~eaW 556 (777)
T KOG1128|consen 517 LQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDN----------------------------------------AEAW 556 (777)
T ss_pred cchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCc----------------------------------------hhhh
Confidence 999999999999999999999999999999999998 5568
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc
Q 002379 752 NNLGSIYVECGKLDQAENCYINALDI--KHTRAHQGLARVYYLKNELKAAYDEMTKLLEKA 810 (929)
Q Consensus 752 ~~lg~~~~~~g~~~eA~~~~~~al~~--~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~ 810 (929)
+|++.+|...|+-.+|...+++|++- ++...|.|.-.+....|.+++|++.+.+.+...
T Consensus 557 nNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 557 NNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred hhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 88888888888888888888888887 567788888888888888888888888887654
No 119
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.16 E-value=1.7e-07 Score=98.98 Aligned_cols=304 Identities=16% Similarity=0.055 Sum_probs=187.6
Q ss_pred HHHHHHHHhhHHHHhcccHHHHHHHHHHHHhcCccccHH--HHHHHHHHhchHHHHHHHHHhhhccCCCchhhhHHHHHH
Q 002379 417 QRMLALHQLGCVMFEREEYKDACYYFEAAADAGHIYSLA--GLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLY 494 (929)
Q Consensus 417 ~~a~~~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~~~a--~la~~~~~~g~a~~a~~~~~~~~~~~~~~~~~~~~~~l~ 494 (929)
.++.....-|..-+..|+|.+|.+...++-+-++....+ .-+++-..+|+
T Consensus 82 rra~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd---------------------------- 133 (400)
T COG3071 82 RRARKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGD---------------------------- 133 (400)
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhccc----------------------------
Confidence 345566667888888899999999998876665544442 22222222222
Q ss_pred hhhhHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccC-CHhHHHHHHHHHHHhccHHHHHHHHH
Q 002379 495 NLGREKIVDLNYASELDPT-LSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTL 572 (929)
Q Consensus 495 ~~~~~Ai~~~~kal~l~P~-~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~~g~~~~A~~~~~ 572 (929)
.+.+-..+.++.+..++ .......++..+..+|+++.|.....++++..| ++..+.....+|...|++.+......
T Consensus 134 --~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~ 211 (400)
T COG3071 134 --EDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILP 211 (400)
T ss_pred --HHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHH
Confidence 22455566667776333 345677888888888999999988888888888 77888888888888898888888877
Q ss_pred HHHhhcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 002379 573 ALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLR 652 (929)
Q Consensus 573 ~al~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~lg~~~~~ 652 (929)
+.-+..--+..-..+.+-....|.+...... ..+..+ ...++..-..-.+++.+....+.-+..
T Consensus 212 ~L~ka~~l~~~e~~~le~~a~~glL~q~~~~-~~~~gL---------------~~~W~~~pr~lr~~p~l~~~~a~~li~ 275 (400)
T COG3071 212 KLRKAGLLSDEEAARLEQQAWEGLLQQARDD-NGSEGL---------------KTWWKNQPRKLRNDPELVVAYAERLIR 275 (400)
T ss_pred HHHHccCCChHHHHHHHHHHHHHHHHHHhcc-ccchHH---------------HHHHHhccHHhhcChhHHHHHHHHHHH
Confidence 7665432222110100111111111111100 000000 000011111112234455555556666
Q ss_pred hcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHHHHHhcCCCCCChHHHHH
Q 002379 653 LNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQ 732 (929)
Q Consensus 653 ~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~l~~~l~~~~~~~~~~~~a~~ 732 (929)
.|+.++|.+..+.+++..-+.. ....++ ....+++..=++..++.++..|+.
T Consensus 276 l~~~~~A~~~i~~~Lk~~~D~~-L~~~~~--~l~~~d~~~l~k~~e~~l~~h~~~------------------------- 327 (400)
T COG3071 276 LGDHDEAQEIIEDALKRQWDPR-LCRLIP--RLRPGDPEPLIKAAEKWLKQHPED------------------------- 327 (400)
T ss_pred cCChHHHHHHHHHHHHhccChh-HHHHHh--hcCCCCchHHHHHHHHHHHhCCCC-------------------------
Confidence 6666666666666665543322 111111 123445555555555555555544
Q ss_pred HHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 002379 733 LLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI-KHTRAHQGLARVYYLKNELKAAYDEMTKLLEK 809 (929)
Q Consensus 733 ~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~-~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~ 809 (929)
+..+..||..+...+.|.+|..+|+.+++. .....+..+|.++.+.|+..+|.+.+++++..
T Consensus 328 ---------------p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 328 ---------------PLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred ---------------hhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 467899999999999999999999999999 55678899999999999999999999988743
No 120
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.15 E-value=6e-08 Score=97.58 Aligned_cols=387 Identities=13% Similarity=0.053 Sum_probs=225.4
Q ss_pred HhcccHHHHHHHHHHHHhcCccccHHHHHHHHHHhchHHHHHHHHHhhhccCCCchhhhHHHHHHhhhh--HHHHHHHHH
Q 002379 430 FEREEYKDACYYFEAAADAGHIYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNLGR--EKIVDLNYA 507 (929)
Q Consensus 430 ~~~g~y~~A~~~f~~al~~~~~~~~a~la~~~~~~g~a~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~Ai~~~~ka 507 (929)
.+..+|++|++++..-.+..|....+ ....|.++|...+ .|..+|++.
T Consensus 21 I~d~ry~DaI~~l~s~~Er~p~~rAg------------------------------LSlLgyCYY~~Q~f~~AA~CYeQL 70 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSELERSPRSRAG------------------------------LSLLGYCYYRLQEFALAAECYEQL 70 (459)
T ss_pred HHHhhHHHHHHHHHHHHhcCccchHH------------------------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66778888888888777777654432 1222333333333 677788888
Q ss_pred HhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccC-CHhHHHHHHHHHHHhccHHHHHHHHHHHHhhcCCchhhhc
Q 002379 508 SELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHG 586 (929)
Q Consensus 508 l~l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 586 (929)
-.+.|......++.|..+++.+.+..|+.....+.+... ...++...+.+.+..+++..+....++.-.. +..
T Consensus 71 ~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e--n~A---- 144 (459)
T KOG4340|consen 71 GQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE--NEA---- 144 (459)
T ss_pred HhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCC--Ccc----
Confidence 888888888888888888888888888888777763211 3344555566667777777776655543211 222
Q ss_pred cccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 002379 587 RVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLA 666 (929)
Q Consensus 587 ~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~a 666 (929)
......|-+....|+++.|...+ +.+++...-++.+-++++.++++.++++.|+++....
T Consensus 145 --d~~in~gCllykegqyEaAvqkF------------------qaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEI 204 (459)
T KOG4340|consen 145 --DGQINLGCLLYKEGQYEAAVQKF------------------QAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEI 204 (459)
T ss_pred --chhccchheeeccccHHHHHHHH------------------HHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 34445666777778888884444 7888887777888888888888888888888877766
Q ss_pred Hhc----CCc-------------------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch-HHHHHHHHH
Q 002379 667 RNH----SSS-------------------------EHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYI 716 (929)
Q Consensus 667 l~~----~p~-------------------------~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~~~~~l~~~ 716 (929)
++. .|. -.++++..+.++++.|+++.|.+.+...--..... +....--.+
T Consensus 205 ieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~A 284 (459)
T KOG4340|consen 205 IERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQA 284 (459)
T ss_pred HHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHH
Confidence 543 221 12445666788899999988887664432211111 112222222
Q ss_pred HHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcCC---CHHHHHHHHHHH-HH
Q 002379 717 LADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIK---HTRAHQGLARVY-YL 792 (929)
Q Consensus 717 l~~~~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~---~~~a~~~la~~~-~~ 792 (929)
+.+..-+++.....++. .+....-|.+.+.++-.+|.+..-|+-|.+.+-.--... -....+.+-..+ ..
T Consensus 285 l~n~~~~p~~g~~KLqF------LL~~nPfP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~LLdaLIt~ 358 (459)
T KOG4340|consen 285 LMNMDARPTEGFEKLQF------LLQQNPFPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDLLDALITC 358 (459)
T ss_pred HhcccCCccccHHHHHH------HHhcCCCChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHHHHHHHhC
Confidence 33333333332222211 111222356778888888888888888877664432221 012233333332 23
Q ss_pred hCCHHHHHHHHHHHHHHccCCH-----HHHHHHhh--hCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHH
Q 002379 793 KNELKAAYDEMTKLLEKAQYSA-----SAFEKRSE--YSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVE 865 (929)
Q Consensus 793 ~g~~~~A~~~~~~al~~~p~~~-----~~~~~lg~--~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~ 865 (929)
.-..++|.+-+.+.-..-.+.- .+...+.. ......|++.|+.++++ .-.+....|++++...+|..+.+
T Consensus 359 qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~---YLPVlMa~AkiyW~~~Dy~~vEk 435 (459)
T KOG4340|consen 359 QTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEK---YLPVLMAQAKIYWNLEDYPMVEK 435 (459)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhccccccHHHHH
Confidence 4456666655544432211100 00000100 01123455555555543 22455667778888888888888
Q ss_pred HHHHHHhcCCCchHHH
Q 002379 866 ELSKAIAFKPDLQMLH 881 (929)
Q Consensus 866 ~l~kal~~~p~~~~~~ 881 (929)
.|++..+...++..|.
T Consensus 436 ~Fr~SvefC~ehd~Wk 451 (459)
T KOG4340|consen 436 IFRKSVEFCNDHDVWK 451 (459)
T ss_pred HHHHHHhhhcccceee
Confidence 8888887777666554
No 121
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.14 E-value=4.4e-09 Score=124.54 Aligned_cols=143 Identities=13% Similarity=0.055 Sum_probs=105.4
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHH
Q 002379 630 NQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEA 709 (929)
Q Consensus 630 ~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~ 709 (929)
.......|.++.++..+|.+....|.+++|...++.+++..|++..++..++.++.+.+++++|+..+++++..+|++
T Consensus 76 ~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~-- 153 (694)
T PRK15179 76 LDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSS-- 153 (694)
T ss_pred HHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCC--
Confidence 444556788899999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC--CCHHHHHHHH
Q 002379 710 FFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI--KHTRAHQGLA 787 (929)
Q Consensus 710 ~~~l~~~l~~~~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~--~~~~a~~~la 787 (929)
..+++.+|.++...|++++|+.+|++++.. +++.++.++|
T Consensus 154 --------------------------------------~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a 195 (694)
T PRK15179 154 --------------------------------------AREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWA 195 (694)
T ss_pred --------------------------------------HHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 333444555555555555555555555543 2334555555
Q ss_pred HHHHHhCCHHHHHHHHHHHHHHccC
Q 002379 788 RVYYLKNELKAAYDEMTKLLEKAQY 812 (929)
Q Consensus 788 ~~~~~~g~~~~A~~~~~~al~~~p~ 812 (929)
.++...|+.++|...|+++++...+
T Consensus 196 ~~l~~~G~~~~A~~~~~~a~~~~~~ 220 (694)
T PRK15179 196 QSLTRRGALWRARDVLQAGLDAIGD 220 (694)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhhCc
Confidence 5555555555555555555544433
No 122
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.14 E-value=4.4e-09 Score=124.50 Aligned_cols=141 Identities=14% Similarity=-0.012 Sum_probs=107.6
Q ss_pred HHHhhcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 002379 573 ALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLR 652 (929)
Q Consensus 573 ~al~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~lg~~~~~ 652 (929)
......|++. .++.+++.+....|.+++|..++ +.+++..|++..++..++.++.+
T Consensus 77 ~~~~~~~~~~------~~~~~La~i~~~~g~~~ea~~~l------------------~~~~~~~Pd~~~a~~~~a~~L~~ 132 (694)
T PRK15179 77 DYVRRYPHTE------LFQVLVARALEAAHRSDEGLAVW------------------RGIHQRFPDSSEAFILMLRGVKR 132 (694)
T ss_pred HHHHhccccH------HHHHHHHHHHHHcCCcHHHHHHH------------------HHHHhhCCCcHHHHHHHHHHHHH
Confidence 3334456666 77777888888888888886666 77788888888888888888888
Q ss_pred hcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHHHHHhcCCCCCChHHHHH
Q 002379 653 LNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQ 732 (929)
Q Consensus 653 ~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~l~~~l~~~~~~~~~~~~a~~ 732 (929)
++++++|+..+++++..+|+++..++.+|.++.+.|++++|+..|++++..+|++
T Consensus 133 ~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~------------------------- 187 (694)
T PRK15179 133 QQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEF------------------------- 187 (694)
T ss_pred hccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCc-------------------------
Confidence 8888888888888888888888888888888888888888888888888766665
Q ss_pred HHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC
Q 002379 733 LLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI 777 (929)
Q Consensus 733 ~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~ 777 (929)
..++..+|.++...|+.++|...|+++++.
T Consensus 188 ---------------~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 188 ---------------ENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred ---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 445667777777777777777777777776
No 123
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.14 E-value=1.1e-07 Score=120.60 Aligned_cols=381 Identities=13% Similarity=-0.024 Sum_probs=240.4
Q ss_pred HHHHHHHhhHHHHhcccHHHHHHHHHHHHhcCccccHH----HHHHHHHHhchHHHHHHHHHhhhc----cCCCchhhhH
Q 002379 418 RMLALHQLGCVMFEREEYKDACYYFEAAADAGHIYSLA----GLARAKYKVGQQYSAYKLINSIIS----EHKPTGWMYQ 489 (929)
Q Consensus 418 ~a~~~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~~~a----~la~~~~~~g~a~~a~~~~~~~~~----~~~~~~~~~~ 489 (929)
....+...+..+...|++.+|+.++..+ +.....+ ..+......|.... ........+ ...+......
T Consensus 340 ~~~lh~raa~~~~~~g~~~~Al~~a~~a---~d~~~~~~ll~~~a~~l~~~g~~~~-l~~~l~~lp~~~~~~~~~l~~~~ 415 (903)
T PRK04841 340 LPELHRAAAEAWLAQGFPSEAIHHALAA---GDAQLLRDILLQHGWSLFNQGELSL-LEECLNALPWEVLLENPRLVLLQ 415 (903)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHC---CCHHHHHHHHHHhHHHHHhcCChHH-HHHHHHhCCHHHHhcCcchHHHH
Confidence 3445556677788899999888766544 2211111 22233333444222 222222222 1123333334
Q ss_pred HHHHHhhhh--HHHHHHHHHHhcCCC---------ChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccCC--H----hHHH
Q 002379 490 ERSLYNLGR--EKIVDLNYASELDPT---------LSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS--V----DCLE 552 (929)
Q Consensus 490 ~~~l~~~~~--~Ai~~~~kal~l~P~---------~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~~--~----~~~~ 552 (929)
+......++ ++...+.++....+. .......+|.++...|++++|...+++++...+. . ....
T Consensus 416 a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~ 495 (903)
T PRK04841 416 AWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATS 495 (903)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHH
Confidence 444444444 777777777654221 1234456788889999999999999999864431 1 2356
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHhhcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHH
Q 002379 553 LRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQM 632 (929)
Q Consensus 553 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~a 632 (929)
.+|.++...|++++|...+++++..............+...++.++...|+++.|...+ .++
T Consensus 496 ~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~------------------~~a 557 (903)
T PRK04841 496 VLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQ------------------EKA 557 (903)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHH------------------HHH
Confidence 67888899999999999999999875543322222245667888889999999997766 444
Q ss_pred Hhc-----C---CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-----chHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002379 633 LIN-----D---PGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSS-----SEHERLVYEGWILYDTGHREEALSRAEK 699 (929)
Q Consensus 633 l~~-----~---p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p-----~~~~~~~~lg~~~~~~g~~~eA~~~~~~ 699 (929)
+.. . +.....+..+|.++...|++++|...+++++.... .....+..+|.++...|++++|...+++
T Consensus 558 l~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~ 637 (903)
T PRK04841 558 FQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNR 637 (903)
T ss_pred HHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 432 1 11233456788999999999999999999987532 2355667789999999999999999999
Q ss_pred HHhhccchHHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcCC-
Q 002379 700 SISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIK- 778 (929)
Q Consensus 700 al~~~p~~~~~~~l~~~l~~~~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~- 778 (929)
+..+.+...... .+ . ..........+...|+.+.|...+.......
T Consensus 638 a~~~~~~~~~~~---------------------~~---~---------~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~ 684 (903)
T PRK04841 638 LENLLGNGRYHS---------------------DW---I---------ANADKVRLIYWQMTGDKEAAANWLRQAPKPEF 684 (903)
T ss_pred HHHHHhcccccH---------------------hH---h---------hHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCC
Confidence 877543220000 00 0 0000111233445788888888877765431
Q ss_pred -CH----HHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHhhhCCHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Q 002379 779 -HT----RAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAV 853 (929)
Q Consensus 779 -~~----~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~g~~~~A~~~~~~al~l~p~~~~~~~~la~~ 853 (929)
.. ..+..++.++...|++++|...+++++......... .....++..+|.+
T Consensus 685 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~------------------------~~~a~~~~~la~a 740 (903)
T PRK04841 685 ANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLM------------------------SDLNRNLILLNQL 740 (903)
T ss_pred ccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCch------------------------HHHHHHHHHHHHH
Confidence 11 124678889999999999999988887753221110 1123455667778
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCc
Q 002379 854 LMDDQKEVEAVEELSKAIAFKPDL 877 (929)
Q Consensus 854 ~~~~g~~~eA~~~l~kal~~~p~~ 877 (929)
+...|+.++|...+.+++++....
T Consensus 741 ~~~~G~~~~A~~~L~~Al~la~~~ 764 (903)
T PRK04841 741 YWQQGRKSEAQRVLLEALKLANRT 764 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHhCcc
Confidence 888888888888888888766544
No 124
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.13 E-value=7.2e-10 Score=105.23 Aligned_cols=122 Identities=18% Similarity=0.126 Sum_probs=98.0
Q ss_pred HHHHHHHHccCCHHHHHHHh----hhCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc
Q 002379 802 EMTKLLEKAQYSASAFEKRS----EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDL 877 (929)
Q Consensus 802 ~~~~al~~~p~~~~~~~~lg----~~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~ 877 (929)
.+++++..+|++......+| ..|++++|+..+++++..+|.++.++..+|.++...|++++|+..++++++.+|++
T Consensus 5 ~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~ 84 (135)
T TIGR02552 5 TLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDD 84 (135)
T ss_pred hHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 45566666666666555555 35666777777777777778888888999999999999999999999999999988
Q ss_pred hHHH-HHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHhh
Q 002379 878 QMLH-LRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNRARDQ 923 (929)
Q Consensus 878 ~~~~-~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~l~~~ 923 (929)
+..+ .+|.++...|++++|+..|+++++++|++........++...
T Consensus 85 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 131 (135)
T TIGR02552 85 PRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSELKERAEAM 131 (135)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 6555 779999999999999999999999999999877777666543
No 125
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.12 E-value=4.5e-09 Score=105.15 Aligned_cols=178 Identities=13% Similarity=0.009 Sum_probs=160.7
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccC-CHhHHHHHHHHHHHhccHHHHHHHHHHHHhh
Q 002379 499 EKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLALLAL 577 (929)
Q Consensus 499 ~Ai~~~~kal~l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~ 577 (929)
.+...+-+....+|++..+ ..++..+...|+-+.+.....++....+ ++..+...|...+..|+|.+|+..++++..+
T Consensus 51 ~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l 129 (257)
T COG5010 51 GAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL 129 (257)
T ss_pred HHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc
Confidence 4666677788889999999 9999999999999999999888765554 6666766899999999999999999999999
Q ss_pred cCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHH
Q 002379 578 ESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQK 657 (929)
Q Consensus 578 ~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~ 657 (929)
.|+++ +++..+|.++.+.|+.+.|..-+ .+++++.|+++.+..++|..|.-.|+++
T Consensus 130 ~p~d~------~~~~~lgaaldq~Gr~~~Ar~ay------------------~qAl~L~~~~p~~~nNlgms~~L~gd~~ 185 (257)
T COG5010 130 APTDW------EAWNLLGAALDQLGRFDEARRAY------------------RQALELAPNEPSIANNLGMSLLLRGDLE 185 (257)
T ss_pred CCCCh------hhhhHHHHHHHHccChhHHHHHH------------------HHHHHhccCCchhhhhHHHHHHHcCCHH
Confidence 99999 88999999999999999996655 9999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002379 658 AAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSI 701 (929)
Q Consensus 658 ~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al 701 (929)
.|..++..+....+.+..+..+++.+....|++++|.....+-+
T Consensus 186 ~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 186 DAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQEL 229 (257)
T ss_pred HHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhccccc
Confidence 99999999999999899999999999999999999988765543
No 126
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.08 E-value=3.7e-09 Score=118.53 Aligned_cols=217 Identities=16% Similarity=0.116 Sum_probs=164.9
Q ss_pred CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHHH
Q 002379 637 PGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYI 716 (929)
Q Consensus 637 p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~l~~~ 716 (929)
|........++..+...|-...|+..|++ .+.|-....+|...|+..+|.....+-++.+|+...|..+|..
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Er--------lemw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFER--------LEMWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDV 466 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHh--------HHHHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhh
Confidence 45566677899999999999999999998 5677788999999999999999999999955555777777777
Q ss_pred HHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHhC
Q 002379 717 LADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKN 794 (929)
Q Consensus 717 l~~~~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~--~~~a~~~la~~~~~~g 794 (929)
..+.. .|++|.+..+..-. .+...+|......++|+++.++++..++++ ....|+++|.+..+.+
T Consensus 467 ~~d~s-----------~yEkawElsn~~sa--rA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqle 533 (777)
T KOG1128|consen 467 LHDPS-----------LYEKAWELSNYISA--RAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLE 533 (777)
T ss_pred ccChH-----------HHHHHHHHhhhhhH--HHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHh
Confidence 66655 67777765554332 244555555666788888888888888774 3467888888888888
Q ss_pred CHHHHHHHHHHHHHHccCCHHHHHHHh----hhCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 002379 795 ELKAAYDEMTKLLEKAQYSASAFEKRS----EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKA 870 (929)
Q Consensus 795 ~~~~A~~~~~~al~~~p~~~~~~~~lg----~~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~ka 870 (929)
+++.|.+.|..++...|++..+|++++ ..++..+|...+++|++-+-.+...|.+.-.+..+.|.+++|++.|.+.
T Consensus 534 k~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 534 KEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred hhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 888888888888888777777777776 4567777777777777777777777777777777777777777777777
Q ss_pred HhcC
Q 002379 871 IAFK 874 (929)
Q Consensus 871 l~~~ 874 (929)
+.+.
T Consensus 614 l~~~ 617 (777)
T KOG1128|consen 614 LDLR 617 (777)
T ss_pred HHhh
Confidence 6543
No 127
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.07 E-value=3e-08 Score=98.14 Aligned_cols=181 Identities=17% Similarity=0.042 Sum_probs=148.5
Q ss_pred cCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccC-CHhHHHHHHHHHHHhccHHHHHHHHHHHHhhcCCchhhhccc
Q 002379 510 LDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRV 588 (929)
Q Consensus 510 l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 588 (929)
+.|+.-..|-....+....|+.+-|..++++....-| ++......|..+-..|++++|+++|+..++.+|.+...+.
T Consensus 47 ~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~K-- 124 (289)
T KOG3060|consen 47 LGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRK-- 124 (289)
T ss_pred cCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHH--
Confidence 4455555666667778889999999999999775556 6777777888899999999999999999999999984433
Q ss_pred cHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 002379 589 SGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARN 668 (929)
Q Consensus 589 ~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~ 668 (929)
-.-.+....|..-+|+..+ ...++.-+.+.++|..++.+|...|+|++|.-++++.+-
T Consensus 125 ----RKlAilka~GK~l~aIk~l------------------n~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 125 ----RKLAILKAQGKNLEAIKEL------------------NEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred ----HHHHHHHHcCCcHHHHHHH------------------HHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 2334445666666774444 888889999999999999999999999999999999999
Q ss_pred cCCchHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhccch-HHHHHHH
Q 002379 669 HSSSEHERLVYEGWILYDTGH---REEALSRAEKSISIERTF-EAFFLKA 714 (929)
Q Consensus 669 ~~p~~~~~~~~lg~~~~~~g~---~~eA~~~~~~al~~~p~~-~~~~~l~ 714 (929)
++|.++-.+..+|.+++-.|- ++-|.++|.++++++|.+ .+++.+.
T Consensus 183 ~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~ 232 (289)
T KOG3060|consen 183 IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIY 232 (289)
T ss_pred cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHH
Confidence 999999999999999988765 677999999999999966 6555443
No 128
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.03 E-value=4.3e-09 Score=99.89 Aligned_cols=115 Identities=17% Similarity=0.064 Sum_probs=99.1
Q ss_pred HHHHHHHhhcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHH
Q 002379 569 RDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSL 648 (929)
Q Consensus 569 ~~~~~al~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~lg~ 648 (929)
..+++++..+|++. .+...++..+...|++++|...+ ++++..+|.++.++..+|.
T Consensus 4 ~~~~~~l~~~p~~~------~~~~~~a~~~~~~~~~~~A~~~~------------------~~~~~~~p~~~~~~~~la~ 59 (135)
T TIGR02552 4 ATLKDLLGLDSEQL------EQIYALAYNLYQQGRYDEALKLF------------------QLLAAYDPYNSRYWLGLAA 59 (135)
T ss_pred hhHHHHHcCChhhH------HHHHHHHHHHHHcccHHHHHHHH------------------HHHHHhCCCcHHHHHHHHH
Confidence 35677777777777 56666777777778888775555 7777788888889999999
Q ss_pred HHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch
Q 002379 649 LLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF 707 (929)
Q Consensus 649 ~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~ 707 (929)
++...|++++|...++++++.+|+++..++.+|.++...|++++|+..++++++.+|++
T Consensus 60 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 118 (135)
T TIGR02552 60 CCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGEN 118 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence 99999999999999999999999999999999999999999999999999999999988
No 129
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.98 E-value=4e-09 Score=107.42 Aligned_cols=111 Identities=19% Similarity=0.206 Sum_probs=77.9
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHh----hhCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCC
Q 002379 784 QGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS----EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQK 859 (929)
Q Consensus 784 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg----~~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~ 859 (929)
-.-|.-+.+.++|++|+..|.++|+++|.++..|.+++ ++|.++.|++..+.++.+||....+|..||.+|..+|+
T Consensus 85 K~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk 164 (304)
T KOG0553|consen 85 KNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGK 164 (304)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCc
Confidence 34455566666666777777777777777766666666 56667777777777777777777778888888888888
Q ss_pred HHHHHHHHHHHHhcCCCchHHH-HHHHHHHHcCCHH
Q 002379 860 EVEAVEELSKAIAFKPDLQMLH-LRAAFYESIGDLT 894 (929)
Q Consensus 860 ~~eA~~~l~kal~~~p~~~~~~-~la~~~~~~g~~~ 894 (929)
+++|++.|+++++++|+++.+. .+..+-.++++..
T Consensus 165 ~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 165 YEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 8888888888888888887666 4544444444433
No 130
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.97 E-value=8.5e-09 Score=96.69 Aligned_cols=99 Identities=18% Similarity=0.071 Sum_probs=64.8
Q ss_pred hhCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHH-HHHHHHHHcCCHHHHHHHH
Q 002379 822 EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLH-LRAAFYESIGDLTSAIRDS 900 (929)
Q Consensus 822 ~~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~-~la~~~~~~g~~~~A~~~~ 900 (929)
..|++++|...|+-...++|.+...|++||.++..+|+|++|+..|.+++.++|+++..+ +.|.++...|+.+.|.+.|
T Consensus 47 ~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~A~~aF 126 (157)
T PRK15363 47 EVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCYAIKAL 126 (157)
T ss_pred HCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHH
Confidence 345555555555555566666666677777777777777777777777777777776544 6677777777777777777
Q ss_pred HHHhccCCCCHHHHHHHHHH
Q 002379 901 QAALCLDPNHMETLDLYNRA 920 (929)
Q Consensus 901 ~~al~l~P~~~~a~~~~~~l 920 (929)
+.++...-++++-..+..+.
T Consensus 127 ~~Ai~~~~~~~~~~~l~~~A 146 (157)
T PRK15363 127 KAVVRICGEVSEHQILRQRA 146 (157)
T ss_pred HHHHHHhccChhHHHHHHHH
Confidence 77777664444444444443
No 131
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.97 E-value=1.1e-08 Score=109.26 Aligned_cols=258 Identities=17% Similarity=0.066 Sum_probs=173.0
Q ss_pred HHHHhcCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHHHHHhcCCCCCCh
Q 002379 649 LLLRLNCQKAAMRCLRLARNHSSS-EHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESS 727 (929)
Q Consensus 649 ~~~~~g~~~~A~~~l~~al~~~p~-~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~l~~~l~~~~~~~~~~ 727 (929)
-++..|+|..++..++ ....++. ..+....+.+.+..+|+++..+.-....- .|...+...++..+.. +...
T Consensus 10 n~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~~--~~~l~av~~la~y~~~----~~~~ 82 (290)
T PF04733_consen 10 NQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKKSS--SPELQAVRLLAEYLSS----PSDK 82 (290)
T ss_dssp HHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-TTS--SCCCHHHHHHHHHHCT----STTH
T ss_pred HHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhccCC--ChhHHHHHHHHHHHhC----ccch
Confidence 3556788888887666 3333443 35566778888888998887665443311 3333555555544432 2222
Q ss_pred HHHHHHHHHHhhchhccCc--hhHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 002379 728 TYVIQLLEEALRCPSDGLR--KGQALNNLGSIYVECGKLDQAENCYINALDIKHTRAHQGLARVYYLKNELKAAYDEMTK 805 (929)
Q Consensus 728 ~~a~~~~e~Al~~~~~al~--~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~~~a~~~la~~~~~~g~~~~A~~~~~~ 805 (929)
+..+..+++.+ ..... ........|.++...|++++|++.+.+. ++.+.......++...++++.|.+.++.
T Consensus 83 e~~l~~l~~~~---~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~---~~lE~~al~Vqi~L~~~R~dlA~k~l~~ 156 (290)
T PF04733_consen 83 ESALEELKELL---ADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG---GSLELLALAVQILLKMNRPDLAEKELKN 156 (290)
T ss_dssp HCHHHHHHHCC---CTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT---TCHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHH---HhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc---CcccHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 22222222211 11111 1234455667777889999888877654 5667777788899999999999999988
Q ss_pred HHHHccCCH-----HHHHHHhhh-CCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchH
Q 002379 806 LLEKAQYSA-----SAFEKRSEY-SDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQM 879 (929)
Q Consensus 806 al~~~p~~~-----~~~~~lg~~-g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~ 879 (929)
+.+.+.+.. .+|..+..- ..+.+|...|+...+..+..+..++.+|.+.+.+|+|++|.+.++++++.+|+++.
T Consensus 157 ~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d 236 (290)
T PF04733_consen 157 MQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPD 236 (290)
T ss_dssp HHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHH
T ss_pred HHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHH
Confidence 877665543 234444322 46899999999988888888999999999999999999999999999999999976
Q ss_pred HH-HHHHHHHHcCCH-HHHHHHHHHHhccCCCCHHHHHHHHH
Q 002379 880 LH-LRAAFYESIGDL-TSAIRDSQAALCLDPNHMETLDLYNR 919 (929)
Q Consensus 880 ~~-~la~~~~~~g~~-~~A~~~~~~al~l~P~~~~a~~~~~~ 919 (929)
.. +++.+...+|+. +.+.+++.+....+|+|+-......+
T Consensus 237 ~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~~~~~~~ 278 (290)
T PF04733_consen 237 TLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLVKDLAEK 278 (290)
T ss_dssp HHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 55 788888889988 66778889988899999987666544
No 132
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.95 E-value=2.4e-07 Score=100.35 Aligned_cols=147 Identities=17% Similarity=0.116 Sum_probs=113.1
Q ss_pred cHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 002379 589 SGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARN 668 (929)
Q Consensus 589 ~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~ 668 (929)
.+.+-.+..+...++++.|+..+ ...+...|+|+..+...+.++...|+.++|.+.+++++.
T Consensus 307 aa~YG~A~~~~~~~~~d~A~~~l------------------~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~ 368 (484)
T COG4783 307 AAQYGRALQTYLAGQYDEALKLL------------------QPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALA 368 (484)
T ss_pred HHHHHHHHHHHHhcccchHHHHH------------------HHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Confidence 44455566666666777775555 667777777777888888888888888888888888888
Q ss_pred cCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch-HHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCch
Q 002379 669 HSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRK 747 (929)
Q Consensus 669 ~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~~~~~l~~~l~~~~~~~~~~~~a~~~~e~Al~~~~~al~~ 747 (929)
.+|+.+..+.++|.+|.+.|++.+|+..+++.+..+|++ ..|..++..+..+|. .
T Consensus 369 l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~------------------------~ 424 (484)
T COG4783 369 LDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGN------------------------R 424 (484)
T ss_pred cCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCc------------------------h
Confidence 888888888888888888888888888888888888888 777777777777761 1
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHcC
Q 002379 748 GQALNNLGSIYVECGKLDQAENCYINALDI 777 (929)
Q Consensus 748 ~~a~~~lg~~~~~~g~~~eA~~~~~~al~~ 777 (929)
..+....+..|...|++++|+..+..+.+.
T Consensus 425 ~~a~~A~AE~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 425 AEALLARAEGYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 344556677777788888888888777665
No 133
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.91 E-value=3e-08 Score=93.01 Aligned_cols=106 Identities=17% Similarity=0.129 Sum_probs=95.2
Q ss_pred HHhcC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHH
Q 002379 632 MLIND-PGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAF 710 (929)
Q Consensus 632 al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~ 710 (929)
....+ ++.-+..+.+|..++..|++++|...|+-+...+|.++..|++||.++..+|++++|+..|.+++.++|++
T Consensus 26 l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~dd--- 102 (157)
T PRK15363 26 LLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDA--- 102 (157)
T ss_pred HHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC---
Confidence 33455 67778889999999999999999999999999999999999999999999999999999999999999987
Q ss_pred HHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC
Q 002379 711 FLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI 777 (929)
Q Consensus 711 ~~l~~~l~~~~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~ 777 (929)
+..+.++|.+++..|+.+.|.+.|+.++..
T Consensus 103 -------------------------------------p~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 103 -------------------------------------PQAPWAAAECYLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred -------------------------------------chHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 566888999999999999999999999887
No 134
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.87 E-value=2.1e-07 Score=100.90 Aligned_cols=146 Identities=21% Similarity=0.186 Sum_probs=117.3
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHh----hhCCHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Q 002379 778 KHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS----EYSDREMAKNDLNMATQLDPLRTYPYRYRAAV 853 (929)
Q Consensus 778 ~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg----~~g~~~~A~~~~~~al~l~p~~~~~~~~la~~ 853 (929)
....++++.+..++..|++++|...++.++...|+|+..+...+ +.++..+|.+.+++++.++|..+..+.++|.+
T Consensus 304 ~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~a 383 (484)
T COG4783 304 GGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQA 383 (484)
T ss_pred cchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHH
Confidence 44568888889999999999999999999999999988887777 56888999999999999999888889999999
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCchHHH-HHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHhh
Q 002379 854 LMDDQKEVEAVEELSKAIAFKPDLQMLH-LRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNRARDQ 923 (929)
Q Consensus 854 ~~~~g~~~eA~~~l~kal~~~p~~~~~~-~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~l~~~ 923 (929)
|++.|++.+|+..++..+..+|+++..| ++|..|..+|+..+|...+-..+.+.-+...+...+.+.+++
T Consensus 384 ll~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 384 LLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred HHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999887655 668888777776666666666666665555555555544443
No 135
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.87 E-value=2e-08 Score=111.30 Aligned_cols=103 Identities=20% Similarity=0.212 Sum_probs=83.8
Q ss_pred hCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHH-HHHHHHHHcCCHHHHHHHHH
Q 002379 823 YSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLH-LRAAFYESIGDLTSAIRDSQ 901 (929)
Q Consensus 823 ~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~-~la~~~~~~g~~~~A~~~~~ 901 (929)
.|++++|+..|.++++++|.++.++..+|.++...|++++|+..+++++.++|+++..+ .+|.++..+|++++|+..|+
T Consensus 15 ~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~ 94 (356)
T PLN03088 15 DDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALE 94 (356)
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 46666777777777777777778888888888888899999999999988888887555 56888888899999999999
Q ss_pred HHhccCCCCHHHHHHHHHHHhhhh
Q 002379 902 AALCLDPNHMETLDLYNRARDQAS 925 (929)
Q Consensus 902 ~al~l~P~~~~a~~~~~~l~~~~~ 925 (929)
++++++|+++.+...+.++.....
T Consensus 95 ~al~l~P~~~~~~~~l~~~~~kl~ 118 (356)
T PLN03088 95 KGASLAPGDSRFTKLIKECDEKIA 118 (356)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHH
Confidence 999999988888888888765553
No 136
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.83 E-value=1e-07 Score=101.93 Aligned_cols=138 Identities=17% Similarity=0.131 Sum_probs=88.6
Q ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhccchHHHHHHHHHH
Q 002379 640 SFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTG--HREEALSRAEKSISIERTFEAFFLKAYIL 717 (929)
Q Consensus 640 ~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g--~~~eA~~~~~~al~~~p~~~~~~~l~~~l 717 (929)
.+.......++..+++++.|.+.++.+.+.+.+..-.....+|+....| ++.+|...|++.....+..
T Consensus 131 lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t---------- 200 (290)
T PF04733_consen 131 LELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGST---------- 200 (290)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--S----------
T ss_pred ccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCC----------
Confidence 3344444455555555555555555555555554444444455554444 3555555555543332221
Q ss_pred HhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHhCC
Q 002379 718 ADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI--KHTRAHQGLARVYYLKNE 795 (929)
Q Consensus 718 ~~~~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~--~~~~a~~~la~~~~~~g~ 795 (929)
...++.++.++..+|+|++|.+.+++++.. ++++++.+++.+....|+
T Consensus 201 ------------------------------~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk 250 (290)
T PF04733_consen 201 ------------------------------PKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGK 250 (290)
T ss_dssp ------------------------------HHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-
T ss_pred ------------------------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCC
Confidence 355778889999999999999999999888 567788999999899998
Q ss_pred H-HHHHHHHHHHHHHccCCHHHH
Q 002379 796 L-KAAYDEMTKLLEKAQYSASAF 817 (929)
Q Consensus 796 ~-~~A~~~~~~al~~~p~~~~~~ 817 (929)
. +.+.+.+.++...+|+++..-
T Consensus 251 ~~~~~~~~l~qL~~~~p~h~~~~ 273 (290)
T PF04733_consen 251 PTEAAERYLSQLKQSNPNHPLVK 273 (290)
T ss_dssp TCHHHHHHHHHCHHHTTTSHHHH
T ss_pred ChhHHHHHHHHHHHhCCCChHHH
Confidence 7 666778888888888887763
No 137
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.79 E-value=2.1e-06 Score=88.96 Aligned_cols=244 Identities=12% Similarity=0.094 Sum_probs=160.5
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHhcccCCHhH----HHHHHHHHHHhccHHHHHHHHHHHHhhcCCchhhhccccHHH
Q 002379 517 PYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDC----LELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDH 592 (929)
Q Consensus 517 a~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~ 592 (929)
-....|.-++...++++|+....+.+..-.+... +-.+......+|.|++++..--..+....+.........++.
T Consensus 8 ~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~l 87 (518)
T KOG1941|consen 8 KQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYL 87 (518)
T ss_pred HHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666777778888888877777633221111 222334456667777766554333332222111111124555
Q ss_pred HHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcC---C--CChHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 002379 593 LVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLIND---P--GKSFLRFRQSLLLLRLNCQKAAMRCLRLAR 667 (929)
Q Consensus 593 ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~~---p--~~~~~~~~lg~~~~~~g~~~~A~~~l~~al 667 (929)
.++..+....++.+++.+- ...+... | .-..+...+|.++..++.++++++.|+.|+
T Consensus 88 nlar~~e~l~~f~kt~~y~------------------k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~ 149 (518)
T KOG1941|consen 88 NLARSNEKLCEFHKTISYC------------------KTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKAL 149 (518)
T ss_pred HHHHHHHHHHHhhhHHHHH------------------HHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHH
Confidence 5666666666666554333 2222221 1 112455668899999999999999999998
Q ss_pred hcCCch------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch--HHHHHHHHHHHhcCCCCCChHHHHHHHHHHhh
Q 002379 668 NHSSSE------HERLVYEGWILYDTGHREEALSRAEKSISIERTF--EAFFLKAYILADTNLDPESSTYVIQLLEEALR 739 (929)
Q Consensus 668 ~~~p~~------~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~--~~~~~l~~~l~~~~~~~~~~~~a~~~~e~Al~ 739 (929)
+....+ -.++..+|.++....++++|+-+..+|.++-.+. ..|.. .|.
T Consensus 150 ~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~--------------------kyr---- 205 (518)
T KOG1941|consen 150 RYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSL--------------------KYR---- 205 (518)
T ss_pred HHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhH--------------------HHH----
Confidence 865433 3567889999999999999999999998875543 11110 111
Q ss_pred chhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC----C----CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc
Q 002379 740 CPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI----K----HTRAHQGLARVYYLKNELKAAYDEMTKLLEKA 810 (929)
Q Consensus 740 ~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~----~----~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~ 810 (929)
..+++.++..+..+|+..+|.++.+++.++ + +......+|.+|...|+.+.|...|+.+....
T Consensus 206 --------~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m 276 (518)
T KOG1941|consen 206 --------AMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTM 276 (518)
T ss_pred --------HHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHH
Confidence 234788999999999999999999999887 2 33567789999999999999999999988653
No 138
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.79 E-value=1.6e-08 Score=104.17 Aligned_cols=147 Identities=17% Similarity=0.146 Sum_probs=117.5
Q ss_pred EEEEEcCeEEEeehhHHhccCHHHHHHhcCCCCcCCCC--eeEecCCCCCHHHHHHHhhhHccCCCCCCChhHHHHHHHH
Q 002379 220 VTFCVRDKEISFVRNKIASLSSPFKAMLYGGFVESKRK--TIDFSHDGVSVEGLRAVEVYTRTSRVDLFCPGIVLELLSF 297 (929)
Q Consensus 220 v~~~v~~~~~~~hr~iLaa~S~~F~~mf~~~~~e~~~~--~i~~~~~~~~~~~~~~~l~~~Yt~~~~~~~~~~~~~ll~~ 297 (929)
|.+-++ .+.|||++++ .|++||+.||.|+|.|+..+ ...++-+..+..+.+.+++|+|+++.+ +..+...++|-+
T Consensus 295 iql~~~-~RyP~hla~i-~R~eyfk~mf~g~f~e~s~n~~~p~lslp~~~~~vveI~lr~lY~d~td-i~~~~A~dvll~ 371 (516)
T KOG0511|consen 295 IQLPEE-DRYPAHLARI-LRVEYFKSMFVGDFIESSVNDTRPGLSLPSLADVVVEIDLRNLYCDQTD-IIFDVASDVLLF 371 (516)
T ss_pred cccccc-ccccHHHHHH-HHHHHHHHHhccchhhhcCCccccccccchHHHHHHHHHHHHhhccccc-chHHHHhhHHHH
Confidence 444443 3499999999 67789999999999996533 222333677888999999999999999 999999999999
Q ss_pred hchhChH--h-HHHHHHHHHHhhcCC--hhhHHHHHHHHHHhChHHHHHHHHHHHHhchhhhcCccchhhhcccchh
Q 002379 298 ANRFCCE--E-MKSACDAHLASLVGD--IEDALILIDYGLEERATLLVASCLQVLLRELPSSLYNPKVMKIFCSSEA 369 (929)
Q Consensus 298 A~~~~~~--~-l~~~C~~~l~~~~~~--~~n~~~~~~~a~~~~~~~L~~~c~~~i~~~~~~v~~~~~f~~L~~~~~~ 369 (929)
|+++.++ + ||.+-..-|.+..-- .-|++.|+.++-..+++.|...+..|+.+|+...+..|++-..+..+-.
T Consensus 372 ad~lal~~dr~Lkt~as~~itq~~e~id~y~V~dIl~~~wd~~~~rlEqfa~~~~a~hl~~l~~dPe~~~~~~~s~~ 448 (516)
T KOG0511|consen 372 ADKLALADDRLLKTAASAEITQWLELIDMYGVLDILEYCWDLVACRLEQFAETHEARHLLLLLPDPEGDSSLRTSVP 448 (516)
T ss_pred hhHhhhhhhhhhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhcCCchhhHHHHhccc
Confidence 9999776 3 666655555444321 5669999999999999999999999999999999999999776554433
No 139
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.78 E-value=1.2e-07 Score=87.37 Aligned_cols=112 Identities=14% Similarity=0.073 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHhhhCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCH
Q 002379 781 RAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKE 860 (929)
Q Consensus 781 ~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~ 860 (929)
+.++.+|..+...|++++|...+.+++..+|++. ..+.+++.+|.++...|++
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~---------------------------~~~~~~~~l~~~~~~~~~~ 55 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKST---------------------------YAPNAHYWLGEAYYAQGKY 55 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcc---------------------------ccHHHHHHHHHHHHhhccH
Confidence 5667777788888888888877777777665431 2245778899999999999
Q ss_pred HHHHHHHHHHHhcCCCch----HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHH
Q 002379 861 VEAVEELSKAIAFKPDLQ----MLHLRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNR 919 (929)
Q Consensus 861 ~eA~~~l~kal~~~p~~~----~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~ 919 (929)
++|+..|++++...|+++ .++.+|.++..+|++++|+..++++++..|++..+.....+
T Consensus 56 ~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 118 (119)
T TIGR02795 56 ADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAKLAQKR 118 (119)
T ss_pred HHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHHHHHhc
Confidence 999999999999988852 34577999999999999999999999999999887766554
No 140
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.76 E-value=4.3e-07 Score=87.68 Aligned_cols=212 Identities=15% Similarity=0.104 Sum_probs=126.4
Q ss_pred hHHHHHHHHHHHhccHHHHHHHHHHHHhhcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHH
Q 002379 549 DCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAV 628 (929)
Q Consensus 549 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~ 628 (929)
..++.+|..|-..|-..-|.-.|.+++.+.|+.+ .+...+|.-+...|+++.|.+ .
T Consensus 66 ~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~------~vfNyLG~Yl~~a~~fdaa~e------------------a 121 (297)
T COG4785 66 QLLFERGVLYDSLGLRALARNDFSQALAIRPDMP------EVFNYLGIYLTQAGNFDAAYE------------------A 121 (297)
T ss_pred HHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcH------HHHHHHHHHHHhcccchHHHH------------------H
Confidence 3455666667677777777777777777777777 566667777777777776633 3
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHH-HHHHHhhccch
Q 002379 629 INQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSR-AEKSISIERTF 707 (929)
Q Consensus 629 ~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~-~~~al~~~p~~ 707 (929)
|+..++++|..--+..++|..++.-|++.-|.+.+.+-.+.+|++|-.-..+-.. ...-++.+|... .+++...+.+.
T Consensus 122 Fds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~-E~k~dP~~A~tnL~qR~~~~d~e~ 200 (297)
T COG4785 122 FDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN-EQKLDPKQAKTNLKQRAEKSDKEQ 200 (297)
T ss_pred hhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHH-HhhCCHHHHHHHHHHHHHhccHhh
Confidence 3677777777777777777777777888888888888778888776532222111 123345555543 34555544443
Q ss_pred HHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCc----hhHHHHHHHHHHHHcCCHHHHHHHHHHHHcCC-----
Q 002379 708 EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLR----KGQALNNLGSIYVECGKLDQAENCYINALDIK----- 778 (929)
Q Consensus 708 ~~~~~l~~~l~~~~~~~~~~~~a~~~~e~Al~~~~~al~----~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~----- 778 (929)
-.|......+.... .+ ..++.+....+.... -.++++.+|..+...|+.++|...|+-++..+
T Consensus 201 WG~~iV~~yLgkiS-----~e---~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannVynfV 272 (297)
T COG4785 201 WGWNIVEFYLGKIS-----EE---TLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNVYNFV 272 (297)
T ss_pred hhHHHHHHHHhhcc-----HH---HHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhHHHHH
Confidence 33444444444332 00 012222222111111 13778888888888888888888888887652
Q ss_pred -CHHHHHHHHHHHHHh
Q 002379 779 -HTRAHQGLARVYYLK 793 (929)
Q Consensus 779 -~~~a~~~la~~~~~~ 793 (929)
+..+.+.++.+....
T Consensus 273 E~RyA~~EL~~l~q~~ 288 (297)
T COG4785 273 EHRYALLELSLLGQDQ 288 (297)
T ss_pred HHHHHHHHHHHhcccc
Confidence 223455555554433
No 141
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.76 E-value=6.4e-07 Score=91.20 Aligned_cols=177 Identities=17% Similarity=0.117 Sum_probs=117.2
Q ss_pred HHHHHHHhhHHHHhcccHHHHHHHHHHHHhcCccccHHHHHHHHHHhchHHHHHHHHHhhhccCCCchhhhHHHHHHhhh
Q 002379 418 RMLALHQLGCVMFEREEYKDACYYFEAAADAGHIYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNLG 497 (929)
Q Consensus 418 ~a~~~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~~~a~la~~~~~~g~a~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 497 (929)
.+..++..|..++..|+|.+|+..|++++...|....+
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a------------------------------------------ 41 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYA------------------------------------------ 41 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTH------------------------------------------
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHH------------------------------------------
Confidence 45678889999999999999999999988876665441
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccC----CHhHHHHHHHHHHHh-----------c
Q 002379 498 REKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL----SVDCLELRAWLFIAA-----------D 562 (929)
Q Consensus 498 ~~Ai~~~~kal~l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~----~~~~~~~~a~~~~~~-----------g 562 (929)
+.+.+.+|.+++..|+++.|+..+++.+...| .+.+++.+|.+++.. +
T Consensus 42 -----------------~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~ 104 (203)
T PF13525_consen 42 -----------------PQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQT 104 (203)
T ss_dssp -----------------HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---H
T ss_pred -----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccchhcccChH
Confidence 23445556666666666666666666666555 223455556655443 3
Q ss_pred cHHHHHHHHHHHHhhcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHH
Q 002379 563 DYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFL 642 (929)
Q Consensus 563 ~~~~A~~~~~~al~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~~p~~~~~ 642 (929)
...+|+..|+..+...|+..... .+...+..+... + +.-
T Consensus 105 ~~~~A~~~~~~li~~yP~S~y~~---~A~~~l~~l~~~--------------------------------l------a~~ 143 (203)
T PF13525_consen 105 STRKAIEEFEELIKRYPNSEYAE---EAKKRLAELRNR--------------------------------L------AEH 143 (203)
T ss_dssp HHHHHHHHHHHHHHH-TTSTTHH---HHHHHHHHHHHH--------------------------------H------HHH
T ss_pred HHHHHHHHHHHHHHHCcCchHHH---HHHHHHHHHHHH--------------------------------H------HHH
Confidence 45689999999999999988220 111111111111 1 122
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCch---HHHHHHHHHHHHHcCCHHHHH
Q 002379 643 RFRQSLLLLRLNCQKAAMRCLRLARNHSSSE---HERLVYEGWILYDTGHREEAL 694 (929)
Q Consensus 643 ~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~---~~~~~~lg~~~~~~g~~~eA~ 694 (929)
-+..|..|.+.|.+..|+.-++.+++..|+. .+++..++..|..+|..+.|.
T Consensus 144 e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 144 ELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 3568899999999999999999999999986 467888999999999988554
No 142
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.76 E-value=1.9e-07 Score=90.08 Aligned_cols=197 Identities=16% Similarity=0.087 Sum_probs=140.1
Q ss_pred CChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHHHH
Q 002379 638 GKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYIL 717 (929)
Q Consensus 638 ~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~l~~~l 717 (929)
..+..++.+|..|-.+|-..-|.-.|.+++.+.|+.+++++.+|..+...|+++.|.+.|...++++|.+
T Consensus 63 eRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y---------- 132 (297)
T COG4785 63 ERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY---------- 132 (297)
T ss_pred HHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcc----------
Confidence 3467889999999999999999999999999999999999999999999999999999999999999987
Q ss_pred HhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCHHHHHHHHHHH-HHhCCH
Q 002379 718 ADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIKHTRAHQGLARVY-YLKNEL 796 (929)
Q Consensus 718 ~~~~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~~~a~~~la~~~-~~~g~~ 796 (929)
.-+..|.|..+..-|++.-|.+.+.+-.+.++.+.+..+-.-. ...-++
T Consensus 133 ------------------------------~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E~k~dP 182 (297)
T COG4785 133 ------------------------------NYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNEQKLDP 182 (297)
T ss_pred ------------------------------hHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHHhhCCH
Confidence 2335667777777888888888887777764433322221111 123356
Q ss_pred HHHHHHHHHHHHHccCCHHHHHHHh-hhCCHHHHHHHHHHHHhcCC-------CCcHHHHHHHHHHHhcCCHHHHHHHHH
Q 002379 797 KAAYDEMTKLLEKAQYSASAFEKRS-EYSDREMAKNDLNMATQLDP-------LRTYPYRYRAAVLMDDQKEVEAVEELS 868 (929)
Q Consensus 797 ~~A~~~~~~al~~~p~~~~~~~~lg-~~g~~~~A~~~~~~al~l~p-------~~~~~~~~la~~~~~~g~~~eA~~~l~ 868 (929)
.+|...+.+-.+...+..+.|...+ .+|+..+ ...++++..-.. ...++++++|..+...|+.++|...|+
T Consensus 183 ~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~-e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfK 261 (297)
T COG4785 183 KQAKTNLKQRAEKSDKEQWGWNIVEFYLGKISE-ETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFK 261 (297)
T ss_pred HHHHHHHHHHHHhccHhhhhHHHHHHHHhhccH-HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 6676655544444444444444433 2233211 112222222111 235789999999999999999999999
Q ss_pred HHHhcCC
Q 002379 869 KAIAFKP 875 (929)
Q Consensus 869 kal~~~p 875 (929)
-++..+-
T Consensus 262 LaiannV 268 (297)
T COG4785 262 LAVANNV 268 (297)
T ss_pred HHHHHhH
Confidence 8887653
No 143
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.75 E-value=3.7e-08 Score=81.12 Aligned_cols=67 Identities=15% Similarity=0.189 Sum_probs=64.9
Q ss_pred ChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhcc
Q 002379 639 KSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTG-HREEALSRAEKSISIER 705 (929)
Q Consensus 639 ~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g-~~~eA~~~~~~al~~~p 705 (929)
++..|..+|.++...|++++|+..|+++++.+|+++.+++++|.++..+| ++++|+..++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 57889999999999999999999999999999999999999999999999 79999999999999987
No 144
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.74 E-value=1.5e-06 Score=90.75 Aligned_cols=202 Identities=14% Similarity=0.039 Sum_probs=136.4
Q ss_pred CChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHH---HHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHH
Q 002379 638 GKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHER---LVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKA 714 (929)
Q Consensus 638 ~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~---~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~l~ 714 (929)
..+..++..|..+...|++++|+..|++++...|..+.+ .+.+|.++++.+++++|+..+++.++..|+++
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~------ 103 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHP------ 103 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCC------
Confidence 356667888888888899999999999999888887544 47888999999999999999999999888770
Q ss_pred HHHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Q 002379 715 YILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIKHTRAHQGLARVYYLKN 794 (929)
Q Consensus 715 ~~l~~~~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~~~a~~~la~~~~~~g 794 (929)
..+.+++.+|.++...++- .+..-..++ .......
T Consensus 104 -------------------------------~~~~a~Y~~g~~~~~~~~~-----~~~~~~~~~---------~~~rD~~ 138 (243)
T PRK10866 104 -------------------------------NIDYVLYMRGLTNMALDDS-----ALQGFFGVD---------RSDRDPQ 138 (243)
T ss_pred -------------------------------chHHHHHHHHHhhhhcchh-----hhhhccCCC---------ccccCHH
Confidence 0123344444443322210 011101110 0011112
Q ss_pred CHHHHHHHHHHHHHHccCCHHHHHHHhhhCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 002379 795 ELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFK 874 (929)
Q Consensus 795 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~ 874 (929)
...+|+..+++.++..|++..+- +|...+... ....+.--+..|..|.+.|.|..|+.-++.+++..
T Consensus 139 ~~~~A~~~~~~li~~yP~S~ya~----------~A~~rl~~l---~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Y 205 (243)
T PRK10866 139 HARAAFRDFSKLVRGYPNSQYTT----------DATKRLVFL---KDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDY 205 (243)
T ss_pred HHHHHHHHHHHHHHHCcCChhHH----------HHHHHHHHH---HHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHC
Confidence 24578899999999999886542 222111111 11122334578889999999999999999999999
Q ss_pred CCch----HHHHHHHHHHHcCCHHHHHHHHHHH
Q 002379 875 PDLQ----MLHLRAAFYESIGDLTSAIRDSQAA 903 (929)
Q Consensus 875 p~~~----~~~~la~~~~~~g~~~~A~~~~~~a 903 (929)
|+.+ .++.++..|..+|..++|.......
T Consensus 206 p~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 206 PDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred CCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 9874 4557799999999999998876543
No 145
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.68 E-value=5.6e-08 Score=80.05 Aligned_cols=66 Identities=27% Similarity=0.336 Sum_probs=61.5
Q ss_pred CcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHH-HHHHHHHHcC-CHHHHHHHHHHHhccCC
Q 002379 843 RTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLH-LRAAFYESIG-DLTSAIRDSQAALCLDP 908 (929)
Q Consensus 843 ~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~-~la~~~~~~g-~~~~A~~~~~~al~l~P 908 (929)
++..|..+|.++...|++++|+..|+++++++|+++..+ .+|.+|..+| ++++|++.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 567899999999999999999999999999999997665 7799999999 79999999999999998
No 146
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.68 E-value=1.4e-05 Score=83.08 Aligned_cols=312 Identities=17% Similarity=0.099 Sum_probs=190.7
Q ss_pred HHhhHHHHhcccHHHHHHHHHHHHhcCccc-----cHHHHHHHHHHhchHHHHHHHHHhhhccCCCchhhhHHHHHHhhh
Q 002379 423 HQLGCVMFEREEYKDACYYFEAAADAGHIY-----SLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNLG 497 (929)
Q Consensus 423 ~~lG~~~~~~g~y~~A~~~f~~al~~~~~~-----~~a~la~~~~~~g~a~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 497 (929)
.+-|..++...++++|+..+.+.+..-.+. ....++.+....|...+.+..+.+.+.
T Consensus 10 ~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~------------------ 71 (518)
T KOG1941|consen 10 IEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQID------------------ 71 (518)
T ss_pred HHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHH------------------
Confidence 456888899999999999999988762211 111233444455554444443332222
Q ss_pred hHHHHHHHHHHhcCCC--ChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccC-CH-----hHHHHHHHHHHHhccHHHHHH
Q 002379 498 REKIVDLNYASELDPT--LSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SV-----DCLELRAWLFIAADDYESALR 569 (929)
Q Consensus 498 ~~Ai~~~~kal~l~P~--~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~-----~~~~~~a~~~~~~g~~~~A~~ 569 (929)
-+.+.+.. ...++.+++..+.+..++.+++.+-..-+.... .+ .....++..+..++.++++++
T Consensus 72 --------~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Le 143 (518)
T KOG1941|consen 72 --------TARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALE 143 (518)
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHH
Confidence 22222111 135788888888888899999988887776554 22 235567888889999999999
Q ss_pred HHHHHHhhcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHH
Q 002379 570 DTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLL 649 (929)
Q Consensus 570 ~~~~al~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~lg~~ 649 (929)
.|+.++....++.... ++ -.++..+|.+
T Consensus 144 sfe~A~~~A~~~~D~~-----------------------------------------------LE-----lqvcv~Lgsl 171 (518)
T KOG1941|consen 144 SFEKALRYAHNNDDAM-----------------------------------------------LE-----LQVCVSLGSL 171 (518)
T ss_pred HHHHHHHHhhccCCce-----------------------------------------------ee-----eehhhhHHHH
Confidence 9999988755544111 11 1245566777
Q ss_pred HHHhcCHHHHHHHHHHHHhcCCc----------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Q 002379 650 LLRLNCQKAAMRCLRLARNHSSS----------EHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILAD 719 (929)
Q Consensus 650 ~~~~g~~~~A~~~l~~al~~~p~----------~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~l~~~l~~ 719 (929)
+..+.++++|.-+..+|.++... ..-+++.++..+..+|..-.|.++.+++.++.-..
T Consensus 172 f~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~------------ 239 (518)
T KOG1941|consen 172 FAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQH------------ 239 (518)
T ss_pred HHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHh------------
Confidence 77777777777776666654321 13356677888888888888888888887753222
Q ss_pred cCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC--------CCHHHHHHHHHHHH
Q 002379 720 TNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI--------KHTRAHQGLARVYY 791 (929)
Q Consensus 720 ~~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~--------~~~~a~~~la~~~~ 791 (929)
| ++|+. .....-+|.+|...|+.+.|..-|++|... ....++.+.|.++.
T Consensus 240 -G-------------dra~~--------arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~ 297 (518)
T KOG1941|consen 240 -G-------------DRALQ--------ARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLE 297 (518)
T ss_pred -C-------------ChHHH--------HHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 0 01111 234667888888888888888888888765 12345555565554
Q ss_pred HhCCHHH-----HHHHHHHHHHHccCCHHHHHHHhhhCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHH
Q 002379 792 LKNELKA-----AYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEE 866 (929)
Q Consensus 792 ~~g~~~~-----A~~~~~~al~~~p~~~~~~~~lg~~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~ 866 (929)
...-..+ |++.-++++++...-.--+ ..-..+..++.+|...|.-++--+.
T Consensus 298 ~~r~~~k~~~Crale~n~r~levA~~IG~K~------------------------~vlK~hcrla~iYrs~gl~d~~~~h 353 (518)
T KOG1941|consen 298 TLRLQNKICNCRALEFNTRLLEVASSIGAKL------------------------SVLKLHCRLASIYRSKGLQDELRAH 353 (518)
T ss_pred HHHHhhcccccchhHHHHHHHHHHHHhhhhH------------------------HHHHHHHHHHHHHHhccchhHHHHH
Confidence 4333332 5666566655532211100 0123455677777777766655555
Q ss_pred HHHH
Q 002379 867 LSKA 870 (929)
Q Consensus 867 l~ka 870 (929)
+.++
T Consensus 354 ~~ra 357 (518)
T KOG1941|consen 354 VVRA 357 (518)
T ss_pred HHHH
Confidence 5544
No 147
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.67 E-value=2.7e-07 Score=102.34 Aligned_cols=108 Identities=20% Similarity=0.239 Sum_probs=84.2
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHh----hhCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcC
Q 002379 783 HQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS----EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQ 858 (929)
Q Consensus 783 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg----~~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g 858 (929)
+...|..++..|++++|+..|+++++.+|++..+|..+| ..|++++|+..+++++.++|.++.+++.+|.++...|
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 344566667777777777777777777777777777766 4577777777788888888888888999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCchHHH-HHHHHHHHc
Q 002379 859 KEVEAVEELSKAIAFKPDLQMLH-LRAAFYESI 890 (929)
Q Consensus 859 ~~~eA~~~l~kal~~~p~~~~~~-~la~~~~~~ 890 (929)
++++|+..|+++++++|+++.+. .++.+...+
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999987666 445554444
No 148
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.66 E-value=2.5e-06 Score=88.98 Aligned_cols=174 Identities=14% Similarity=0.044 Sum_probs=125.2
Q ss_pred hhhHHHHHHhhhh--HHHHHHHHHHhcCCCChHHH---HHHHHHHHHhCCHHHHHHHHHHHhcccC----CHhHHHHHHH
Q 002379 486 WMYQERSLYNLGR--EKIVDLNYASELDPTLSFPY---KYRAVAKMEEGQIRAAISEIDRIIVFKL----SVDCLELRAW 556 (929)
Q Consensus 486 ~~~~~~~l~~~~~--~Ai~~~~kal~l~P~~~~a~---~~~a~~~~~~g~~~~A~~~~~~al~~~~----~~~~~~~~a~ 556 (929)
++..+...+..++ +|+..|++.+...|..+.+. +.+|.++++.+++++|+..+++.++..| .+.+++.+|.
T Consensus 35 ~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~ 114 (243)
T PRK10866 35 IYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGL 114 (243)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHH
Confidence 3444444444444 88888999988888876554 7888889999999999999999988887 3445777787
Q ss_pred HHHHhc------------------cHHHHHHHHHHHHhhcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccc
Q 002379 557 LFIAAD------------------DYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWS 618 (929)
Q Consensus 557 ~~~~~g------------------~~~~A~~~~~~al~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~ 618 (929)
++...+ ...+|+..|++.++..|+..... .+...+..+...
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~---~A~~rl~~l~~~------------------ 173 (243)
T PRK10866 115 TNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTT---DATKRLVFLKDR------------------ 173 (243)
T ss_pred hhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHH---HHHHHHHHHHHH------------------
Confidence 754433 13567788888888888877110 111111111111
Q ss_pred cccccccHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCch---HHHHHHHHHHHHHcCCHHHHHH
Q 002379 619 SVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE---HERLVYEGWILYDTGHREEALS 695 (929)
Q Consensus 619 ~~~~~~~l~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~---~~~~~~lg~~~~~~g~~~eA~~ 695 (929)
-+.--+..|..|.+.|.|..|+.-++.+++..|+. .+++..++.+|...|..++|..
T Consensus 174 --------------------la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~ 233 (243)
T PRK10866 174 --------------------LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADK 233 (243)
T ss_pred --------------------HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHH
Confidence 11223477889999999999999999999988875 6788999999999999999988
Q ss_pred HHHHH
Q 002379 696 RAEKS 700 (929)
Q Consensus 696 ~~~~a 700 (929)
.....
T Consensus 234 ~~~~l 238 (243)
T PRK10866 234 VAKII 238 (243)
T ss_pred HHHHH
Confidence 76543
No 149
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.64 E-value=2.6e-06 Score=86.72 Aligned_cols=188 Identities=20% Similarity=0.155 Sum_probs=120.1
Q ss_pred ChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCch---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHH
Q 002379 639 KSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE---HERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAY 715 (929)
Q Consensus 639 ~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~---~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~l~~ 715 (929)
.+..++..|..++..|++.+|+..|++++...|.. +.+.+.+|.+++..|++++|+..+++.++..|++
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~-------- 75 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNS-------- 75 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT---------
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC--------
Confidence 45667777777777788888888888777777775 5567777777777777777777777777777765
Q ss_pred HHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC
Q 002379 716 ILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIKHTRAHQGLARVYYLKNE 795 (929)
Q Consensus 716 ~l~~~~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~~~a~~~la~~~~~~g~ 795 (929)
-..+.+++.+|.++..... ..+ ......+.
T Consensus 76 -----------------------------~~~~~A~Y~~g~~~~~~~~---------~~~------------~~~~D~~~ 105 (203)
T PF13525_consen 76 -----------------------------PKADYALYMLGLSYYKQIP---------GIL------------RSDRDQTS 105 (203)
T ss_dssp -----------------------------TTHHHHHHHHHHHHHHHHH---------HHH-------------TT---HH
T ss_pred -----------------------------cchhhHHHHHHHHHHHhCc---------cch------------hcccChHH
Confidence 0114566666655443310 000 11223344
Q ss_pred HHHHHHHHHHHHHHccCCHHHHHHHhhhCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 002379 796 LKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKP 875 (929)
Q Consensus 796 ~~~A~~~~~~al~~~p~~~~~~~~lg~~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p 875 (929)
..+|+..|+..+...|++..+-. |...+..+- .....--+..|..|.+.|.|..|+..++.+++..|
T Consensus 106 ~~~A~~~~~~li~~yP~S~y~~~----------A~~~l~~l~---~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp 172 (203)
T PF13525_consen 106 TRKAIEEFEELIKRYPNSEYAEE----------AKKRLAELR---NRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYP 172 (203)
T ss_dssp HHHHHHHHHHHHHH-TTSTTHHH----------HHHHHHHHH---HHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHCcCchHHHH----------HHHHHHHHH---HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC
Confidence 67899999999999999866522 221111111 11123345689999999999999999999999999
Q ss_pred CchH----HHHHHHHHHHcCCHHHHH
Q 002379 876 DLQM----LHLRAAFYESIGDLTSAI 897 (929)
Q Consensus 876 ~~~~----~~~la~~~~~~g~~~~A~ 897 (929)
+.+. +..++..|.++|..+.|.
T Consensus 173 ~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 173 DTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp TSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CCchHHHHHHHHHHHHHHhCChHHHH
Confidence 9853 347799999999998554
No 150
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.61 E-value=3.5e-06 Score=90.62 Aligned_cols=174 Identities=17% Similarity=0.131 Sum_probs=114.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHH
Q 002379 680 EGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYV 759 (929)
Q Consensus 680 lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~l~~~l~~~~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~ 759 (929)
.|..|...|++++|...|.++....-.... .+.. +..+...+.++.
T Consensus 41 Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~-----------------------~~~A-----------a~~~~~Aa~~~k 86 (282)
T PF14938_consen 41 AANCFKLAKDWEKAAEAYEKAADCYEKLGD-----------------------KFEA-----------AKAYEEAANCYK 86 (282)
T ss_dssp HHHHHHHTT-CHHHHHHHHHHHHHHHHTT------------------------HHHH-----------HHHHHHHHHHHH
T ss_pred HHHHHHHHhccchhHHHHHHHHHHHHHcCC-----------------------HHHH-----------HHHHHHHHHHHH
Confidence 467777788888888888887664332200 0000 233555566655
Q ss_pred HcCCHHHHHHHHHHHHcC----CCH----HHHHHHHHHHHHh-CCHHHHHHHHHHHHHHccCCHHHHHHHhhhCCHHHHH
Q 002379 760 ECGKLDQAENCYINALDI----KHT----RAHQGLARVYYLK-NELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAK 830 (929)
Q Consensus 760 ~~g~~~eA~~~~~~al~~----~~~----~a~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~lg~~g~~~~A~ 830 (929)
.. ++++|+.+|++|+.+ +.+ ..+..+|.+|... |++++|++.|+++++......... .
T Consensus 87 ~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~----------~-- 153 (282)
T PF14938_consen 87 KG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPH----------S-- 153 (282)
T ss_dssp HT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HH----------H--
T ss_pred hh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChh----------h--
Confidence 55 888888888888776 222 4677788888888 888888888888887654332111 1
Q ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCch-------HHH-HHHHHHHHcCCHHHHHHHHHH
Q 002379 831 NDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQ-------MLH-LRAAFYESIGDLTSAIRDSQA 902 (929)
Q Consensus 831 ~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~-------~~~-~la~~~~~~g~~~~A~~~~~~ 902 (929)
....+..+|.++...|+|++|++.|+++....-+.+ .++ ..+.++...||...|...+++
T Consensus 154 ------------a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~ 221 (282)
T PF14938_consen 154 ------------AAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALER 221 (282)
T ss_dssp ------------HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred ------------HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 123456788899999999999999999887543321 222 347788889999999999999
Q ss_pred HhccCCCCHH
Q 002379 903 ALCLDPNHME 912 (929)
Q Consensus 903 al~l~P~~~~ 912 (929)
....+|....
T Consensus 222 ~~~~~~~F~~ 231 (282)
T PF14938_consen 222 YCSQDPSFAS 231 (282)
T ss_dssp HGTTSTTSTT
T ss_pred HHhhCCCCCC
Confidence 9999986543
No 151
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.56 E-value=1.5e-06 Score=85.88 Aligned_cols=77 Identities=17% Similarity=0.084 Sum_probs=67.3
Q ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCch---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch-HHHHHHHH
Q 002379 640 SFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE---HERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAY 715 (929)
Q Consensus 640 ~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~---~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~~~~~l~~ 715 (929)
...++.+|.++...|++++|+..|++++.+.|+. +.++.++|.++...|++++|+..+++++.++|.. ..+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 6678999999999999999999999999887663 4589999999999999999999999999999988 55555544
Q ss_pred H
Q 002379 716 I 716 (929)
Q Consensus 716 ~ 716 (929)
+
T Consensus 115 i 115 (168)
T CHL00033 115 I 115 (168)
T ss_pred H
Confidence 4
No 152
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.56 E-value=1.4e-06 Score=100.66 Aligned_cols=86 Identities=22% Similarity=0.178 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHhc--CCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 002379 827 EMAKNDLNMATQL--DPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLHLRAAFYESIGDLTSAIRDSQAAL 904 (929)
Q Consensus 827 ~~A~~~~~~al~l--~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al 904 (929)
..+.....+++.+ +|..+.++..+|..+...|++++|...+++|+.++|+...+..+|.++...|+.++|++.|++|+
T Consensus 401 ~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~ 480 (517)
T PRK10153 401 AALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAF 480 (517)
T ss_pred HHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4455555565553 66777888888888888899999999999999999865445577999999999999999999999
Q ss_pred ccCCCCHH
Q 002379 905 CLDPNHME 912 (929)
Q Consensus 905 ~l~P~~~~ 912 (929)
.++|.++.
T Consensus 481 ~L~P~~pt 488 (517)
T PRK10153 481 NLRPGENT 488 (517)
T ss_pred hcCCCCch
Confidence 99999875
No 153
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.55 E-value=2.8e-07 Score=74.87 Aligned_cols=64 Identities=20% Similarity=0.297 Sum_probs=59.9
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch
Q 002379 644 FRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF 707 (929)
Q Consensus 644 ~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~ 707 (929)
+.+|..+...|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++++.+|++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 3678999999999999999999999999999999999999999999999999999999999975
No 154
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.54 E-value=3e-05 Score=93.15 Aligned_cols=211 Identities=16% Similarity=0.096 Sum_probs=157.1
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHh-cCCch----HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002379 626 LAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARN-HSSSE----HERLVYEGWILYDTGHREEALSRAEKS 700 (929)
Q Consensus 626 l~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~-~~p~~----~~~~~~lg~~~~~~g~~~eA~~~~~~a 700 (929)
.+.+.+.+..+|+.+..|...-......++.++|.+..++|+. +++.. ..+|..+-++...-|.-+.-.+.|++|
T Consensus 1444 aeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRA 1523 (1710)
T KOG1070|consen 1444 AEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERA 1523 (1710)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHH
Confidence 4455666666666666666666666666666666666666654 23322 223333333333334444444555555
Q ss_pred HhhccchHHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC--C
Q 002379 701 ISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI--K 778 (929)
Q Consensus 701 l~~~p~~~~~~~l~~~l~~~~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~--~ 778 (929)
-+... +-..|..|..+|..-+++++|.++|+..++. +
T Consensus 1524 cqycd-----------------------------------------~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q 1562 (1710)
T KOG1070|consen 1524 CQYCD-----------------------------------------AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQ 1562 (1710)
T ss_pred HHhcc-----------------------------------------hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcc
Confidence 44321 2356788889999999999999999999988 4
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccC--CHHHHHHHh----hhCCHHHHHHHHHHHHhcCCCCcHHHHHHHH
Q 002379 779 HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQY--SASAFEKRS----EYSDREMAKNDLNMATQLDPLRTYPYRYRAA 852 (929)
Q Consensus 779 ~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~lg----~~g~~~~A~~~~~~al~l~p~~~~~~~~la~ 852 (929)
....|..+|..++.+++-++|...+.+|+...|. +.......+ ..|+.+.+...|+..+...|...+.|.-+..
T Consensus 1563 ~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid 1642 (1710)
T KOG1070|consen 1563 TRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYID 1642 (1710)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHH
Confidence 6789999999999999999999999999999998 444444444 6799999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCc
Q 002379 853 VLMDDQKEVEAVEELSKAIAFKPDL 877 (929)
Q Consensus 853 ~~~~~g~~~eA~~~l~kal~~~p~~ 877 (929)
.-.+.|+.+.+...|++++.+.-..
T Consensus 1643 ~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1643 MEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred HHHccCCHHHHHHHHHHHHhcCCCh
Confidence 9999999999999999999876443
No 155
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=8.3e-07 Score=94.59 Aligned_cols=128 Identities=21% Similarity=0.210 Sum_probs=92.5
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHhhhCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHH
Q 002379 785 GLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAV 864 (929)
Q Consensus 785 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~ 864 (929)
..|..|++.|++..|...|++++..-...... +.++.... .+ ....++.+++.++.++++|.+|+
T Consensus 213 e~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~--------~~ee~~~~--~~-----~k~~~~lNlA~c~lKl~~~~~Ai 277 (397)
T KOG0543|consen 213 ERGNVLFKEGKFKLAKKRYERAVSFLEYRRSF--------DEEEQKKA--EA-----LKLACHLNLAACYLKLKEYKEAI 277 (397)
T ss_pred HhhhHHHhhchHHHHHHHHHHHHHHhhccccC--------CHHHHHHH--HH-----HHHHHhhHHHHHHHhhhhHHHHH
Confidence 34666677777777777777766543221110 00000000 00 12346789999999999999999
Q ss_pred HHHHHHHhcCCCch-HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHhhhhhh
Q 002379 865 EELSKAIAFKPDLQ-MLHLRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNRARDQASHQ 927 (929)
Q Consensus 865 ~~l~kal~~~p~~~-~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~l~~~~~~~ 927 (929)
..+.++++++|++. .+|.+|.++..+|+++.|+..|+++++++|+|..+..-+.++.++..++
T Consensus 278 ~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~ 341 (397)
T KOG0543|consen 278 ESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREY 341 (397)
T ss_pred HHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHH
Confidence 99999999999997 4556699999999999999999999999999999888888777665543
No 156
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.53 E-value=2.9e-06 Score=97.98 Aligned_cols=144 Identities=12% Similarity=0.030 Sum_probs=105.0
Q ss_pred HHHHHHHHHHh---ccHHHHHHHHHHHHhhcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHH
Q 002379 551 LELRAWLFIAA---DDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLA 627 (929)
Q Consensus 551 ~~~~a~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~ 627 (929)
++.+|.-++.. ++...|+..|+++++++|++. .++..++.++.....|...... +......
T Consensus 342 ~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a------~a~A~la~~~~~~~~~~~~~~~----------~l~~a~~ 405 (517)
T PRK10153 342 LFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFT------YAQAEKALADIVRHSQQPLDEK----------QLAALST 405 (517)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcH------HHHHHHHHHHHHHHhcCCccHH----------HHHHHHH
Confidence 45556555543 347788999999999999988 4555555555333222210000 0000122
Q ss_pred HHHHHHh--cCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc
Q 002379 628 VINQMLI--NDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIER 705 (929)
Q Consensus 628 ~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p 705 (929)
...+++. .+|.++.++..+|..+...|++++|...+++|+.++|+ ..+|..+|.++...|++++|++.|++|+.++|
T Consensus 406 ~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P 484 (517)
T PRK10153 406 ELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNLRP 484 (517)
T ss_pred HHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 2345444 37778889999999999999999999999999999995 88999999999999999999999999999999
Q ss_pred chHHHH
Q 002379 706 TFEAFF 711 (929)
Q Consensus 706 ~~~~~~ 711 (929)
..+.|+
T Consensus 485 ~~pt~~ 490 (517)
T PRK10153 485 GENTLY 490 (517)
T ss_pred CCchHH
Confidence 985444
No 157
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.53 E-value=1.8e-06 Score=90.62 Aligned_cols=115 Identities=12% Similarity=0.050 Sum_probs=90.7
Q ss_pred HHHHHHHHHH-HHhCCHHHHHHHHHHHHHHccCCHHHHHHHhhhCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCC
Q 002379 781 RAHQGLARVY-YLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQK 859 (929)
Q Consensus 781 ~a~~~la~~~-~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~ 859 (929)
..++..|..+ ...|++++|+..|++.++.+|++.. .+.+++.+|.+|+..|+
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~---------------------------a~~A~y~LG~~y~~~g~ 195 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTY---------------------------QPNANYWLGQLNYNKGK 195 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcc---------------------------hHHHHHHHHHHHHHcCC
Confidence 4445555544 4456777777777777766665421 24678899999999999
Q ss_pred HHHHHHHHHHHHhcCCCch----HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHh
Q 002379 860 EVEAVEELSKAIAFKPDLQ----MLHLRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNRARD 922 (929)
Q Consensus 860 ~~eA~~~l~kal~~~p~~~----~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~l~~ 922 (929)
+++|+..|+++++..|+++ .++.+|.++..+|++++|...|+++++..|++..+.....++..
T Consensus 196 ~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~A~~rL~~ 262 (263)
T PRK10803 196 KDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQAQKRLNA 262 (263)
T ss_pred HHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHHHHHhc
Confidence 9999999999999999863 34467999999999999999999999999999998888888753
No 158
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.52 E-value=2.3e-06 Score=91.98 Aligned_cols=213 Identities=16% Similarity=0.097 Sum_probs=140.9
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-----c-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHH
Q 002379 641 FLRFRQSLLLLRLNCQKAAMRCLRLARNHSS-----S-EHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKA 714 (929)
Q Consensus 641 ~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p-----~-~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~l~ 714 (929)
..+...|..|...|++++|...|.++....- . -...+...+.++.+. ++++|+.+|++++.+.-..
T Consensus 36 ~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~------- 107 (282)
T PF14938_consen 36 DLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREA------- 107 (282)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhc-------
Confidence 4566778889999999999999999865431 1 134455556666555 8888888888888653322
Q ss_pred HHHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHc-CCHHHHHHHHHHHHcC----CC----HHHHHH
Q 002379 715 YILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVEC-GKLDQAENCYINALDI----KH----TRAHQG 785 (929)
Q Consensus 715 ~~l~~~~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~-g~~~eA~~~~~~al~~----~~----~~a~~~ 785 (929)
| ++..| +..+..+|.+|... |++++|+++|++|+.+ +. ...+..
T Consensus 108 ------G-----------~~~~a----------A~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~ 160 (282)
T PF14938_consen 108 ------G-----------RFSQA----------AKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLK 160 (282)
T ss_dssp ------T------------HHHH----------HHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred ------C-----------cHHHH----------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHH
Confidence 1 22222 35688899999998 9999999999999988 22 246788
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHhhhCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHH
Q 002379 786 LARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVE 865 (929)
Q Consensus 786 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~ 865 (929)
+|.++...|++++|++.|++.....-++..... .....+...+.+++..|++..|..
T Consensus 161 ~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~-----------------------~~~~~~l~a~l~~L~~~D~v~A~~ 217 (282)
T PF14938_consen 161 AADLYARLGRYEEAIEIYEEVAKKCLENNLLKY-----------------------SAKEYFLKAILCHLAMGDYVAARK 217 (282)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGH-----------------------HHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHhhcccccch-----------------------hHHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999999999988765322211000 001234556778888999999999
Q ss_pred HHHHHHhcCCCch---HHH---HHHHHHHH--cCCHHHHHHHHHHHhccCCCCH
Q 002379 866 ELSKAIAFKPDLQ---MLH---LRAAFYES--IGDLTSAIRDSQAALCLDPNHM 911 (929)
Q Consensus 866 ~l~kal~~~p~~~---~~~---~la~~~~~--~g~~~~A~~~~~~al~l~P~~~ 911 (929)
.+++....+|... ... .+-.++.. ...+.+|+..|.+.-++||-..
T Consensus 218 ~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld~w~~ 271 (282)
T PF14938_consen 218 ALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRLDNWKT 271 (282)
T ss_dssp HHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS---HHHH
T ss_pred HHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCccHHHHH
Confidence 9999999888553 222 22333332 4568888888888888776433
No 159
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.52 E-value=2.6e-06 Score=84.39 Aligned_cols=70 Identities=14% Similarity=0.150 Sum_probs=40.4
Q ss_pred CChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCch---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch
Q 002379 638 GKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE---HERLVYEGWILYDTGHREEALSRAEKSISIERTF 707 (929)
Q Consensus 638 ~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~---~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~ 707 (929)
..+.+++.+|..+...|++++|+..|+++++..|+. ..++..+|.++...|++++|+..+++++...|++
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 105 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQ 105 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence 344455666666666666666666666666554432 3455566666666666666666666666555543
No 160
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.52 E-value=3.5e-07 Score=74.23 Aligned_cols=64 Identities=23% Similarity=0.222 Sum_probs=55.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHH-HHHHHHHHcCCHHHHHHHHHHHhccCCCCH
Q 002379 848 RYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLH-LRAAFYESIGDLTSAIRDSQAALCLDPNHM 911 (929)
Q Consensus 848 ~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~-~la~~~~~~g~~~~A~~~~~~al~l~P~~~ 911 (929)
+.+|..++..|++++|+..|+++++.+|+++..+ .+|.++..+|++++|+..|+++++++|+++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 3578899999999999999999999999887555 779999999999999999999999999885
No 161
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.51 E-value=1.5e-06 Score=79.97 Aligned_cols=105 Identities=15% Similarity=0.091 Sum_probs=78.7
Q ss_pred HhHHHHHHHHHHHhccHHHHHHHHHHHHhhcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHH
Q 002379 548 VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLA 627 (929)
Q Consensus 548 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~ 627 (929)
++.++..|..+...|++++|+..|++++..+|++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~--------------------------------------------- 36 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKST--------------------------------------------- 36 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcc---------------------------------------------
Confidence 34566677777777777777777777777666554
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCch---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 002379 628 VINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE---HERLVYEGWILYDTGHREEALSRAEKSISIE 704 (929)
Q Consensus 628 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~---~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~ 704 (929)
..+.+++.+|.++...|++++|+..|++++...|++ +.++..+|.++...|++++|+..+++++...
T Consensus 37 ----------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 37 ----------YAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred ----------ccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHC
Confidence 113456677888888888888888888888877764 5678888888888888888888888888888
Q ss_pred cch
Q 002379 705 RTF 707 (929)
Q Consensus 705 p~~ 707 (929)
|++
T Consensus 107 p~~ 109 (119)
T TIGR02795 107 PGS 109 (119)
T ss_pred cCC
Confidence 876
No 162
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.50 E-value=1.3e-06 Score=83.35 Aligned_cols=118 Identities=24% Similarity=0.298 Sum_probs=97.4
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHhhhCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHH
Q 002379 783 HQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVE 862 (929)
Q Consensus 783 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~e 862 (929)
+-.-|.-++..|++++|..-|..+++..|....- .....|.+.|.++++++.++.
T Consensus 98 lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e-------------------------~rsIly~Nraaa~iKl~k~e~ 152 (271)
T KOG4234|consen 98 LKKEGNELFKNGDYEEANSKYQEALESCPSTSTE-------------------------ERSILYSNRAAALIKLRKWES 152 (271)
T ss_pred HHHHHHHhhhcccHHHHHHHHHHHHHhCccccHH-------------------------HHHHHHhhhHHHHHHhhhHHH
Confidence 3445667778888888888888888877765331 123456788999999999999
Q ss_pred HHHHHHHHHhcCCCchHHH-HHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHhhhh
Q 002379 863 AVEELSKAIAFKPDLQMLH-LRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNRARDQAS 925 (929)
Q Consensus 863 A~~~l~kal~~~p~~~~~~-~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~l~~~~~ 925 (929)
|++.+.++|+++|....+. .+|.+|.++..+++|+++|++.++++|...++.....++..+..
T Consensus 153 aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~ 216 (271)
T KOG4234|consen 153 AIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLPPKIN 216 (271)
T ss_pred HHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHH
Confidence 9999999999999998766 55999999999999999999999999999999998888866554
No 163
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=3e-06 Score=87.47 Aligned_cols=122 Identities=19% Similarity=0.047 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHHccCCHHHHHHHh----hhCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcC---CHHHHHHHHHH
Q 002379 797 KAAYDEMTKLLEKAQYSASAFEKRS----EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQ---KEVEAVEELSK 869 (929)
Q Consensus 797 ~~A~~~~~~al~~~p~~~~~~~~lg----~~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g---~~~eA~~~l~k 869 (929)
+.-+.-++..+..+|++...|..+| ..|++..|...|.+|+++.|++++.+..+|.+++... .-.+|...+++
T Consensus 139 ~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~ 218 (287)
T COG4235 139 EALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQ 218 (287)
T ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHH
Confidence 3334445555555666666555555 3455566666666666666666666666666554332 34556666666
Q ss_pred HHhcCCCchHH-HHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHH
Q 002379 870 AIAFKPDLQML-HLRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYN 918 (929)
Q Consensus 870 al~~~p~~~~~-~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~ 918 (929)
++..+|++... +++|..++..|++.+|...++..+...|.+..-.....
T Consensus 219 al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie 268 (287)
T COG4235 219 ALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIE 268 (287)
T ss_pred HHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHH
Confidence 66666666533 35566666666666666666666666555544333333
No 164
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.50 E-value=4.1e-05 Score=82.52 Aligned_cols=361 Identities=12% Similarity=0.037 Sum_probs=204.5
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhc-ccC----CHhH-----HHHHHHHHHHhccHHHHH
Q 002379 499 EKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIV-FKL----SVDC-----LELRAWLFIAADDYESAL 568 (929)
Q Consensus 499 ~Ai~~~~kal~l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~-~~~----~~~~-----~~~~a~~~~~~g~~~~A~ 568 (929)
-+....+.+.....+.+.+.+.++..++..|++..|.+.+...-- ..+ .|++ +.++|.+++++|.|..+.
T Consensus 224 ~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~ 303 (696)
T KOG2471|consen 224 LAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASS 303 (696)
T ss_pred HHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHH
Confidence 344444555556668888999999999999999999998876521 111 3332 578899999999999999
Q ss_pred HHHHHHHhhcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhc-CCCChHHHHHHH
Q 002379 569 RDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLIN-DPGKSFLRFRQS 647 (929)
Q Consensus 569 ~~~~~al~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~-~p~~~~~~~~lg 647 (929)
.+|.++++ +.- ..+.. | +..+ +.... ......+.++.|
T Consensus 304 ~~F~kAL~----N~c-----------~qL~~--g-~~~~-----------------------~~~tls~nks~eilYNcG 342 (696)
T KOG2471|consen 304 VLFLKALR----NSC-----------SQLRN--G-LKPA-----------------------KTFTLSQNKSMEILYNCG 342 (696)
T ss_pred HHHHHHHH----HHH-----------HHHhc--c-CCCC-----------------------cceehhcccchhhHHhhh
Confidence 99999996 110 00000 1 0100 00000 123456789999
Q ss_pred HHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCC---H----------------------------------
Q 002379 648 LLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGH---R---------------------------------- 690 (929)
Q Consensus 648 ~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~---~---------------------------------- 690 (929)
..|...|++-.|.++|.++......+|..|..++.+.+...+ .
T Consensus 343 ~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima~~~~l~ee~~~s~s~~~i~~~vig~g~rr~~m~~~nt~~~ 422 (696)
T KOG2471|consen 343 LLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMALQKGLLEEGNSSLSRSEIRVHVIGKGNRRQLMIEENTYVE 422 (696)
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhhhccCCcccccceeeeecccchhheeecccceec
Confidence 999999999999999999999999999999999988754221 1
Q ss_pred ------------HHHHHHHHHHHhhccch---HHHHHHHHHHHhcCCCCC----ChHHHHHHH--HHHhhchhcc-----
Q 002379 691 ------------EEALSRAEKSISIERTF---EAFFLKAYILADTNLDPE----SSTYVIQLL--EEALRCPSDG----- 744 (929)
Q Consensus 691 ------------~eA~~~~~~al~~~p~~---~~~~~l~~~l~~~~~~~~----~~~~a~~~~--e~Al~~~~~a----- 744 (929)
+-|.-+++.++-+-|+. ......+..-.+.+..++ +........ +.-+......
T Consensus 423 ~~qS~~~p~~slefA~vCLrnal~Ll~e~q~~~~~~~~a~ns~~~g~~~e~~e~~~t~~Sk~h~gd~~~~~p~ssp~~~e 502 (696)
T KOG2471|consen 423 LAQSNQLPKLSLEFARVCLRNALYLLNEKQDLGSILSVAMNSTKEGSSSEHEEGNTTTDSKEHKGDMSQEIPQSSPSAFE 502 (696)
T ss_pred cccccCCCccccHHHHHHHHhhhhcCchhhcchhhhhhhccccccCCCCcCCCCCCCcchhcCCCCCCccCCCCCcchHH
Confidence 22233333333322211 111111111111111100 000000000 0000000000
Q ss_pred -Cc--hhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC-CCHHHHHHHHHHH-----HHhCCHHHHHHHHHHHHHHccCCHH
Q 002379 745 -LR--KGQALNNLGSIYVECGKLDQAENCYINALDI-KHTRAHQGLARVY-----YLKNELKAAYDEMTKLLEKAQYSAS 815 (929)
Q Consensus 745 -l~--~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~-~~~~a~~~la~~~-----~~~g~~~~A~~~~~~al~~~p~~~~ 815 (929)
++ ....+.+.+.+-...|+.-.|+..-++.++. +-..++..+|.+| ..+++..+|...+.--+--..+...
T Consensus 503 ~leNm~~ai~A~~ayV~L~Lgd~i~AL~~a~kLLq~~~lS~~~kfLGHiYAaEAL~lldr~seA~~HL~p~~~~~~~f~~ 582 (696)
T KOG2471|consen 503 DLENMRQAIFANMAYVELELGDPIKALSAATKLLQLADLSKIYKFLGHIYAAEALCLLDRPSEAGAHLSPYLLGQDDFKL 582 (696)
T ss_pred HHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHcCChhhhhhccChhhcCCccccc
Confidence 00 0245677788888999999999999998887 4445555555554 4455555665544331100000000
Q ss_pred HHHHHhhhCCHHHHH---HHHHHHHhcCC---------CCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CchHHH
Q 002379 816 AFEKRSEYSDREMAK---NDLNMATQLDP---------LRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKP--DLQMLH 881 (929)
Q Consensus 816 ~~~~lg~~g~~~~A~---~~~~~al~l~p---------~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p--~~~~~~ 881 (929)
.+. ..|++.-. +.++-....+| .....++++|.++.-+|++++|...+..+..+-+ .++.+.
T Consensus 583 ~~n----~~Df~~~~~~~e~l~~s~~r~~q~~~~sv~~Ar~v~~~nLa~a~alq~~~dqAk~ll~~aatl~hs~v~~~A~ 658 (696)
T KOG2471|consen 583 PYN----QEDFDQWWKHTETLDPSTGRTRQSVFLSVEEARGVLFANLAAALALQGHHDQAKSLLTHAATLLHSLVNVQAT 658 (696)
T ss_pred ccc----hhhhhhhhccccccCCcCCCCcccccCCHHHHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhhccccHHHH
Confidence 000 00111100 00000000111 1234578999999999999999999999998877 334444
Q ss_pred HH-HHHHHHcCCHHHHHHHHHHHh
Q 002379 882 LR-AAFYESIGDLTSAIRDSQAAL 904 (929)
Q Consensus 882 ~l-a~~~~~~g~~~~A~~~~~~al 904 (929)
.+ -.+-..+|+...|+..+++.-
T Consensus 659 ~lavyidL~~G~~q~al~~lk~~~ 682 (696)
T KOG2471|consen 659 VLAVYIDLMLGRSQDALARLKQCT 682 (696)
T ss_pred HHHHHHHHhcCCCcchHHHHHhcc
Confidence 33 444556899999999888764
No 165
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.50 E-value=1e-07 Score=97.57 Aligned_cols=232 Identities=12% Similarity=-0.012 Sum_probs=162.0
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHHHHHhcCC
Q 002379 643 RFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNL 722 (929)
Q Consensus 643 ~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~l~~~l~~~~~ 722 (929)
.-..|.-|+.+|+|++|+.+|.+++..+|.++..+.+.+.+|++...+..|...++.++.++..+
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y--------------- 164 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLY--------------- 164 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHH---------------
Confidence 45789999999999999999999999999999999999999999999999999999999877644
Q ss_pred CCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHH----
Q 002379 723 DPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIKHTRAHQGLARVYYLKNELKA---- 798 (929)
Q Consensus 723 ~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~~~a~~~la~~~~~~g~~~~---- 798 (929)
..+|...|.+...+|+..+|.+.++.++++.+.. ..|-..+.......+
T Consensus 165 -------------------------~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~--~ELkK~~a~i~Sl~E~~I~ 217 (536)
T KOG4648|consen 165 -------------------------VKAYSRRMQARESLGNNMEAKKDCETVLALEPKN--IELKKSLARINSLRERKIA 217 (536)
T ss_pred -------------------------HHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCccc--HHHHHHHHHhcchHhhhHH
Confidence 3346777888888899999999999999984431 111112222222111
Q ss_pred ---------HHHHHHHHH-HHccCCHHHHHHHhhhCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHH
Q 002379 799 ---------AYDEMTKLL-EKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELS 868 (929)
Q Consensus 799 ---------A~~~~~~al-~~~p~~~~~~~~lg~~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~ 868 (929)
|.+-..+++ ...+.+. ....|.++.++.++...+..+..+.....+ +..+.+..+++.|+....
T Consensus 218 ~KsT~G~~~A~Q~~~Q~l~~K~~G~~-----Fsk~~~~~~~i~~~~~~~A~~~~~~~L~~~-~~~~~KI~~~~~~~~~~~ 291 (536)
T KOG4648|consen 218 TKSTPGFTPARQGMIQILPIKKPGYK-----FSKKAMRSVPVVDVVSPRATIDDSNQLRIS-DEDIDKIFNSNCGIIEEV 291 (536)
T ss_pred hhcCCCCCccccchhhhccccCcchh-----hhhhhccccceeEeeccccccCccccCccc-HHHHHHHhhcchhHHHHH
Confidence 111111111 0011000 002345555666665555444433333333 667788889999999999
Q ss_pred HHHhcCCCchHHH-HHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHh
Q 002379 869 KAIAFKPDLQMLH-LRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNRARD 922 (929)
Q Consensus 869 kal~~~p~~~~~~-~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~l~~ 922 (929)
+++..+|...... ..+.+---.|...+|...++.++.+.|.+..+..-..++..
T Consensus 292 ~~~~~~~s~~~~~s~~~~A~T~~~~~~E~K~~~~T~~~~~P~~~~~~~~~sr~~~ 346 (536)
T KOG4648|consen 292 KKTNPKPTPMPDTSGPPKAETIAKTSKEVKPTKQTAVKVAPAVETPKETETRKDT 346 (536)
T ss_pred HhcCCCCCcCcccCCCchhHHHHhhhhhcCcchhheeeeccccccchhhhhhhcc
Confidence 9998888775444 34555556788899999999999999999887777666543
No 166
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.50 E-value=2.4e-06 Score=84.69 Aligned_cols=115 Identities=20% Similarity=0.183 Sum_probs=88.9
Q ss_pred CchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch----HHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCc
Q 002379 671 SSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF----EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLR 746 (929)
Q Consensus 671 p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~----~~~~~l~~~l~~~~~~~~~~~~a~~~~e~Al~~~~~al~ 746 (929)
+.....++.+|..+...|++++|+..|+++++..|+. ..+..++.++...+ ++++|+..+.+++.
T Consensus 32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~al~ 100 (172)
T PRK02603 32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNG-----------EHDKALEYYHQALE 100 (172)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHH
Confidence 3456678999999999999999999999999887653 57888888888887 77777777776644
Q ss_pred ----hhHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCH
Q 002379 747 ----KGQALNNLGSIYVECGKLDQAENCYINALDIKHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSA 814 (929)
Q Consensus 747 ----~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 814 (929)
...++..+|.++...|+...+...++.++. .+++|.+.+++++..+|++.
T Consensus 101 ~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~------------------~~~~A~~~~~~a~~~~p~~~ 154 (172)
T PRK02603 101 LNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEA------------------LFDKAAEYWKQAIRLAPNNY 154 (172)
T ss_pred hCcccHHHHHHHHHHHHHcCChHhHhhCHHHHHH------------------HHHHHHHHHHHHHhhCchhH
Confidence 247788889999998887777666555432 36777888888888888764
No 167
>PRK11906 transcriptional regulator; Provisional
Probab=98.48 E-value=4.5e-06 Score=91.40 Aligned_cols=155 Identities=10% Similarity=0.024 Sum_probs=115.9
Q ss_pred HHHHHHHHHH---hcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccCCHhHHHHHHHHHHHhccHHHHHHHHHHHH
Q 002379 499 EKIVDLNYAS---ELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALL 575 (929)
Q Consensus 499 ~Ai~~~~kal---~l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al 575 (929)
.|+..|.+++ +++|..+.+|-.+|.+++..- ..|+.- ...+..+|.+..++++
T Consensus 276 ~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~-----------------------~~g~~~-~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 276 RAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLA-----------------------LHGKSE-LELAAQKALELLDYVS 331 (458)
T ss_pred HHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHH-----------------------HhcCCC-chHHHHHHHHHHHHHH
Confidence 7888999999 999999999999888876431 112222 2345567888888888
Q ss_pred hhcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHHHHhcC
Q 002379 576 ALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNC 655 (929)
Q Consensus 576 ~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 655 (929)
+++|.++ .++..+|.+....++++.|..++ ++++.++|+.+.+|+..|.+....|+
T Consensus 332 eld~~Da------~a~~~~g~~~~~~~~~~~a~~~f------------------~rA~~L~Pn~A~~~~~~~~~~~~~G~ 387 (458)
T PRK11906 332 DITTVDG------KILAIMGLITGLSGQAKVSHILF------------------EQAKIHSTDIASLYYYRALVHFHNEK 387 (458)
T ss_pred hcCCCCH------HHHHHHHHHHHhhcchhhHHHHH------------------HHHhhcCCccHHHHHHHHHHHHHcCC
Confidence 8888888 77777888887777787776666 88888888888888888888888888
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHH-HHHcCCHHHHHHHHHHHH
Q 002379 656 QKAAMRCLRLARNHSSSEHERLVYEGWI-LYDTGHREEALSRAEKSI 701 (929)
Q Consensus 656 ~~~A~~~l~~al~~~p~~~~~~~~lg~~-~~~~g~~~eA~~~~~~al 701 (929)
.++|.+.++++++++|....+-...-++ .+-..-.++|+..|-+-.
T Consensus 388 ~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (458)
T PRK11906 388 IEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNPLKNNIKLYYKET 434 (458)
T ss_pred HHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCchhhhHHHHhhcc
Confidence 8888888888888888775554444444 445566777777775533
No 168
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=3.5e-06 Score=87.03 Aligned_cols=120 Identities=14% Similarity=0.033 Sum_probs=104.8
Q ss_pred HHHHHHHHHHHHhhcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHH
Q 002379 564 YESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLR 643 (929)
Q Consensus 564 ~~~A~~~~~~al~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~~p~~~~~~ 643 (929)
.+..+.-++.-+..+|++. +.+.++|.+|...++++.| +..|.+++++.|+++..+
T Consensus 138 ~~~l~a~Le~~L~~nP~d~------egW~~Lg~~ym~~~~~~~A------------------~~AY~~A~rL~g~n~~~~ 193 (287)
T COG4235 138 MEALIARLETHLQQNPGDA------EGWDLLGRAYMALGRASDA------------------LLAYRNALRLAGDNPEIL 193 (287)
T ss_pred HHHHHHHHHHHHHhCCCCc------hhHHHHHHHHHHhcchhHH------------------HHHHHHHHHhCCCCHHHH
Confidence 4556667778888899998 8888899999998888888 555589999999999999
Q ss_pred HHHHHHHHHhc---CHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch
Q 002379 644 FRQSLLLLRLN---CQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF 707 (929)
Q Consensus 644 ~~lg~~~~~~g---~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~ 707 (929)
..+|.+++.+. ...++...+++++..+|.+..+.+.+|..+++.|+|.+|+..++..++..|.+
T Consensus 194 ~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~ 260 (287)
T COG4235 194 LGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPAD 260 (287)
T ss_pred HHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCC
Confidence 99998887764 35789999999999999999999999999999999999999999999998877
No 169
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.45 E-value=8.3e-06 Score=78.23 Aligned_cols=124 Identities=21% Similarity=0.161 Sum_probs=93.9
Q ss_pred HHHHHHhcCHHHHHHHHHHHHhcCCch---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHHHHHhcCCC
Q 002379 647 SLLLLRLNCQKAAMRCLRLARNHSSSE---HERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLD 723 (929)
Q Consensus 647 g~~~~~~g~~~~A~~~l~~al~~~p~~---~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~l~~~l~~~~~~ 723 (929)
.......++...+...++..+..+|+. ..+.+.+|.+++..|++++|...|+.++...|+..
T Consensus 18 ~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~--------------- 82 (145)
T PF09976_consen 18 ALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPE--------------- 82 (145)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHH---------------
Confidence 333446788888888899998888887 55677889999999999999999999998765540
Q ss_pred CCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHhCCHHHHHHH
Q 002379 724 PESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI-KHTRAHQGLARVYYLKNELKAAYDE 802 (929)
Q Consensus 724 ~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~-~~~~a~~~la~~~~~~g~~~~A~~~ 802 (929)
+ ...+...++.++...|++++|+..++..... -.+.++..+|.++...|++++|+..
T Consensus 83 ----------l------------~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~ 140 (145)
T PF09976_consen 83 ----------L------------KPLARLRLARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAA 140 (145)
T ss_pred ----------H------------HHHHHHHHHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 0 0234677888888888888888888663322 2345777888888888888888888
Q ss_pred HHHHH
Q 002379 803 MTKLL 807 (929)
Q Consensus 803 ~~~al 807 (929)
|++++
T Consensus 141 y~~Al 145 (145)
T PF09976_consen 141 YQKAL 145 (145)
T ss_pred HHHhC
Confidence 88764
No 170
>PRK11906 transcriptional regulator; Provisional
Probab=98.44 E-value=6.2e-06 Score=90.28 Aligned_cols=139 Identities=13% Similarity=0.011 Sum_probs=107.5
Q ss_pred HHHHHHHHHh---ccHHHHHHHHHHHH---hhcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhcccc--cccc
Q 002379 552 ELRAWLFIAA---DDYESALRDTLALL---ALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSS--VDDI 623 (929)
Q Consensus 552 ~~~a~~~~~~---g~~~~A~~~~~~al---~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~--~~~~ 623 (929)
+.+|...+.. ...+.|+..|.+++ .++|+.. .++..++.++...- +..|.. .+-.
T Consensus 259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a------~a~~~lA~~h~~~~-----------~~g~~~~~~~~~ 321 (458)
T PRK11906 259 MLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKT------ECYCLLAECHMSLA-----------LHGKSELELAAQ 321 (458)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccH------HHHHHHHHHHHHHH-----------HhcCCCchHHHH
Confidence 4445444333 24567888888888 7788777 55555555553320 111111 0111
Q ss_pred ccHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 002379 624 GSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISI 703 (929)
Q Consensus 624 ~~l~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~ 703 (929)
.++....++++++|.++.++..+|.++...++++.|...|++|+.++|+.+.+++..|++..-.|+.++|.+.+++++++
T Consensus 322 ~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL 401 (458)
T PRK11906 322 KALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQL 401 (458)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 22555589999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccch
Q 002379 704 ERTF 707 (929)
Q Consensus 704 ~p~~ 707 (929)
+|..
T Consensus 402 sP~~ 405 (458)
T PRK11906 402 EPRR 405 (458)
T ss_pred Cchh
Confidence 9977
No 171
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.44 E-value=2e-06 Score=74.70 Aligned_cols=98 Identities=17% Similarity=0.166 Sum_probs=88.1
Q ss_pred HHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 002379 591 DHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHS 670 (929)
Q Consensus 591 ~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~ 670 (929)
+..++..+...|++++|...+ .++++..|.+..++..+|.++...|++++|+..+++++...
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 64 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYY------------------EKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD 64 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHH------------------HHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 455777788888888886555 89999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccc
Q 002379 671 SSEHERLVYEGWILYDTGHREEALSRAEKSISIERT 706 (929)
Q Consensus 671 p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~ 706 (929)
|.+...+..+|.++...|++++|...+++++...|+
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 65 PDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100 (100)
T ss_pred CcchhHHHHHHHHHHHHHhHHHHHHHHHHHHccCCC
Confidence 999999999999999999999999999999987763
No 172
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.44 E-value=5.3e-06 Score=79.58 Aligned_cols=80 Identities=24% Similarity=0.177 Sum_probs=55.7
Q ss_pred CCHHHHHHHHHHHHhcCCCC---cHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHH-HHHHHHHHcCCHHHHHHH
Q 002379 824 SDREMAKNDLNMATQLDPLR---TYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLH-LRAAFYESIGDLTSAIRD 899 (929)
Q Consensus 824 g~~~~A~~~~~~al~l~p~~---~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~-~la~~~~~~g~~~~A~~~ 899 (929)
|++++|+..|+.++...|+. ..+...+|.++...|++++|+..++.. .-.+-.+..+ .+|.+|...|++++|+..
T Consensus 62 g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~ 140 (145)
T PF09976_consen 62 GDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAA 140 (145)
T ss_pred CCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 44444444444444433322 346778999999999999999999763 2222223333 679999999999999999
Q ss_pred HHHHh
Q 002379 900 SQAAL 904 (929)
Q Consensus 900 ~~~al 904 (929)
|++|+
T Consensus 141 y~~Al 145 (145)
T PF09976_consen 141 YQKAL 145 (145)
T ss_pred HHHhC
Confidence 99985
No 173
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.44 E-value=0.00026 Score=72.68 Aligned_cols=217 Identities=26% Similarity=0.227 Sum_probs=167.9
Q ss_pred hcCHHHHHHHHHHHHhcCCc--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hccchHHHHHHHHHHHhcCCCCCChH
Q 002379 653 LNCQKAAMRCLRLARNHSSS--EHERLVYEGWILYDTGHREEALSRAEKSIS--IERTFEAFFLKAYILADTNLDPESST 728 (929)
Q Consensus 653 ~g~~~~A~~~l~~al~~~p~--~~~~~~~lg~~~~~~g~~~eA~~~~~~al~--~~p~~~~~~~l~~~l~~~~~~~~~~~ 728 (929)
.+.+..+...+...+...+. ........+..+...+++..+...+...+. ..+..
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------- 94 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNL--------------------- 94 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccch---------------------
Confidence 46777788888888887776 367778888888899999999888888775 22222
Q ss_pred HHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC--CCHHHHHHHHH-HHHHhCCHHHHHHHHHH
Q 002379 729 YVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI--KHTRAHQGLAR-VYYLKNELKAAYDEMTK 805 (929)
Q Consensus 729 ~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~--~~~~a~~~la~-~~~~~g~~~~A~~~~~~ 805 (929)
...+...|..+...+++..++..+.+++.. .+.......+. ++...|+++.|...+.+
T Consensus 95 -------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 155 (291)
T COG0457 95 -------------------AEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEK 155 (291)
T ss_pred -------------------HHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 344667777777788888888888888876 23234444455 78888999999999988
Q ss_pred HHHHccC---CHHHHHHHh----hhCCHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc
Q 002379 806 LLEKAQY---SASAFEKRS----EYSDREMAKNDLNMATQLDPL-RTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDL 877 (929)
Q Consensus 806 al~~~p~---~~~~~~~lg----~~g~~~~A~~~~~~al~l~p~-~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~ 877 (929)
++...|. ....+...+ ..++++.|+..+.+++...+. ....+..++..+...+++++|+..+.+++...|..
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 235 (291)
T COG0457 156 ALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDN 235 (291)
T ss_pred HHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCccc
Confidence 8776652 333333333 357889999999999999998 68899999999999999999999999999999884
Q ss_pred -hHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 002379 878 -QMLHLRAAFYESIGDLTSAIRDSQAALCLDPN 909 (929)
Q Consensus 878 -~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~ 909 (929)
......+..+...|++++|...+.+++..+|.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 236 AEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 34445666666778899999999999999997
No 174
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.42 E-value=2.3e-06 Score=74.30 Aligned_cols=74 Identities=32% Similarity=0.364 Sum_probs=50.9
Q ss_pred HHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchH-HHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 002379 836 ATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQM-LHLRAAFYESIGDLTSAIRDSQAALCLDPN 909 (929)
Q Consensus 836 al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~-~~~la~~~~~~g~~~~A~~~~~~al~l~P~ 909 (929)
+++..|.+..++..+|.++...+++++|++.+++++...|.+.. +..+|.++...|++++|...++++++.+|+
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 26 ALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100 (100)
T ss_pred HHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHHHHHHHHHHHccCCC
Confidence 33334444455666777777777777777777777777777653 335677777777777787777777777763
No 175
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.41 E-value=7.1e-05 Score=75.29 Aligned_cols=259 Identities=14% Similarity=0.052 Sum_probs=172.3
Q ss_pred HHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHHHHHhcCCCCCChH
Q 002379 649 LLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESST 728 (929)
Q Consensus 649 ~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~l~~~l~~~~~~~~~~~ 728 (929)
-++..|+|..++..-++.-... ...+...++...|..+|++..-+.-....- .|...+...++..+.. ++..+
T Consensus 17 n~fY~Gnyq~~ine~~~~~~~~-~~~e~d~y~~raylAlg~~~~~~~eI~~~~--~~~lqAvr~~a~~~~~----e~~~~ 89 (299)
T KOG3081|consen 17 NYFYLGNYQQCINEAEKFSSSK-TDVELDVYMYRAYLALGQYQIVISEIKEGK--ATPLQAVRLLAEYLEL----ESNKK 89 (299)
T ss_pred HHHHhhHHHHHHHHHHhhcccc-chhHHHHHHHHHHHHccccccccccccccc--CChHHHHHHHHHHhhC----cchhH
Confidence 4556688888888776654433 667888888999999998765544332221 1111222222222221 11211
Q ss_pred HHHHHHHHHhhchhccCchh-HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 002379 729 YVIQLLEEALRCPSDGLRKG-QALNNLGSIYVECGKLDQAENCYINALDIKHTRAHQGLARVYYLKNELKAAYDEMTKLL 807 (929)
Q Consensus 729 ~a~~~~e~Al~~~~~al~~~-~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al 807 (929)
..+..+.+-+. ....... .....-|.++...|++++|....... ..-++...-..++.+..+.+-|.+.++++.
T Consensus 90 ~~~~~l~E~~a--~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~---~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq 164 (299)
T KOG3081|consen 90 SILASLYELVA--DSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG---ENLEAAALNVQILLKMHRFDLAEKELKKMQ 164 (299)
T ss_pred HHHHHHHHHHH--hhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc---chHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111111110 0001111 34455577899999999999988763 334555555678888899999999999998
Q ss_pred HHccCC-----HHHHHHHh-hhCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHH
Q 002379 808 EKAQYS-----ASAFEKRS-EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLH 881 (929)
Q Consensus 808 ~~~p~~-----~~~~~~lg-~~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~ 881 (929)
+++.+. +.+|..++ .-+....|.-+|+..-+..|..+......+.+.+.+|+|++|...++.++..+++++...
T Consensus 165 ~ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL 244 (299)
T KOG3081|consen 165 QIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETL 244 (299)
T ss_pred ccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHH
Confidence 876553 34566665 345688999999999998888899999999999999999999999999999999998655
Q ss_pred -HHHHHHHHcCCHHHH-HHHHHHHhccCCCCHHHHHHHHH
Q 002379 882 -LRAAFYESIGDLTSA-IRDSQAALCLDPNHMETLDLYNR 919 (929)
Q Consensus 882 -~la~~~~~~g~~~~A-~~~~~~al~l~P~~~~a~~~~~~ 919 (929)
++-.+-...|...++ .+...+....+|+++-+...-.+
T Consensus 245 ~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~vk~~~ek 284 (299)
T KOG3081|consen 245 ANLIVLALHLGKDAEVTERNLSQLKLSHPEHPFVKHLNEK 284 (299)
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhcCCcchHHHHHHHH
Confidence 555555556665444 45667777889999877655443
No 176
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.41 E-value=1.4e-06 Score=74.88 Aligned_cols=81 Identities=15% Similarity=0.158 Sum_probs=63.7
Q ss_pred hcCHHHHHHHHHHHHhcCCc--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHHHHHhcCCCCCChHHH
Q 002379 653 LNCQKAAMRCLRLARNHSSS--EHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYV 730 (929)
Q Consensus 653 ~g~~~~A~~~l~~al~~~p~--~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~l~~~l~~~~~~~~~~~~a 730 (929)
+|+++.|+..++++++.+|. +...++.+|.++++.|++++|+..+++ ...+|.+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~----------------------- 57 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSN----------------------- 57 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCH-----------------------
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCC-----------------------
Confidence 58899999999999999885 466777889999999999999999988 6666655
Q ss_pred HHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002379 731 IQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINA 774 (929)
Q Consensus 731 ~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~a 774 (929)
....+.+|.++..+|++++|++.|+++
T Consensus 58 -----------------~~~~~l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 58 -----------------PDIHYLLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp -----------------HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred -----------------HHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence 233455688888888888888888764
No 177
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.40 E-value=5.3e-07 Score=77.47 Aligned_cols=80 Identities=24% Similarity=0.222 Sum_probs=65.5
Q ss_pred hCCHHHHHHHHHHHHhcCCC--CcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCch-HHHHHHHHHHHcCCHHHHHHH
Q 002379 823 YSDREMAKNDLNMATQLDPL--RTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQ-MLHLRAAFYESIGDLTSAIRD 899 (929)
Q Consensus 823 ~g~~~~A~~~~~~al~l~p~--~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~-~~~~la~~~~~~g~~~~A~~~ 899 (929)
.|+++.|+..++++++.+|. +...++.+|.++.+.|++++|+..+++ .+.+|.+. ..+.+|.++..+|++++|++.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 46777888888888887774 456677899999999999999999999 77888774 444669999999999999999
Q ss_pred HHHH
Q 002379 900 SQAA 903 (929)
Q Consensus 900 ~~~a 903 (929)
|+++
T Consensus 81 l~~~ 84 (84)
T PF12895_consen 81 LEKA 84 (84)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 9875
No 178
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.40 E-value=0.0011 Score=75.95 Aligned_cols=220 Identities=12% Similarity=0.043 Sum_probs=110.0
Q ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHhcccCCHhHHHHHHHHHHHhccHHHHHHHHHHHHhhcCCchhhhccccHHHHH
Q 002379 515 SFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLV 594 (929)
Q Consensus 515 ~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~ll 594 (929)
+..|..-|..+...|+.+.|+..|..+- .|+.+..+..-+|+.++|-++-++ ..+. .+.+.+
T Consensus 912 ~~L~~WWgqYlES~GemdaAl~~Y~~A~-------D~fs~VrI~C~qGk~~kAa~iA~e-----sgd~------AAcYhl 973 (1416)
T KOG3617|consen 912 ESLYSWWGQYLESVGEMDAALSFYSSAK-------DYFSMVRIKCIQGKTDKAARIAEE-----SGDK------AACYHL 973 (1416)
T ss_pred hHHHHHHHHHHhcccchHHHHHHHHHhh-------hhhhheeeEeeccCchHHHHHHHh-----cccH------HHHHHH
Confidence 3445555667777777777777777663 334444444555565555544332 2333 556667
Q ss_pred HHHHHhhcccchHHHHHHhhhccccc------cccccHHHHHHHHhcCCCChH-----------HHHHHHHHHHHhcCHH
Q 002379 595 KLLNHHVRSWSPADCWIKLYDRWSSV------DDIGSLAVINQMLINDPGKSF-----------LRFRQSLLLLRLNCQK 657 (929)
Q Consensus 595 ~~~~~~~~~~~~A~~~l~l~~~~~~~------~~~~~l~~~~~al~~~p~~~~-----------~~~~lg~~~~~~g~~~ 657 (929)
+..|...|+..+|..++......++. .++. -...+-++-..|.+-. .....-.+|.+.|.+.
T Consensus 974 aR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~-d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~ 1052 (1416)
T KOG3617|consen 974 ARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMK-DRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIG 1052 (1416)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHH-HHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchH
Confidence 77777777777776666332222210 0000 0000111111121100 0011123444455555
Q ss_pred HHHHHHHH-----HH-----hcCC-chHHHHHHHHHHHHHcCCHHHHHHHHHHHH------hhccch--HHHHHHHHHHH
Q 002379 658 AAMRCLRL-----AR-----NHSS-SEHERLVYEGWILYDTGHREEALSRAEKSI------SIERTF--EAFFLKAYILA 718 (929)
Q Consensus 658 ~A~~~l~~-----al-----~~~p-~~~~~~~~lg~~~~~~g~~~eA~~~~~~al------~~~p~~--~~~~~l~~~l~ 718 (929)
+|++..-+ ++ .++| .+|..+..-+..+....+|++|+..+-.+- .+..+. ..--
T Consensus 1053 kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vte------- 1125 (1416)
T KOG3617|consen 1053 KALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTE------- 1125 (1416)
T ss_pred HHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhH-------
Confidence 55443211 11 2233 346777777888888888998887654443 332211 0000
Q ss_pred hcCCCCCChHHHHHHHHHHhhchhcc-Cc---hhHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002379 719 DTNLDPESSTYVIQLLEEALRCPSDG-LR---KGQALNNLGSIYVECGKLDQAENCYINA 774 (929)
Q Consensus 719 ~~~~~~~~~~~a~~~~e~Al~~~~~a-l~---~~~a~~~lg~~~~~~g~~~eA~~~~~~a 774 (929)
.+.+-+.--+.. .. .-..+-.+|.+..++|.|..|-+-|.+|
T Consensus 1126 --------------e~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1126 --------------EFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred --------------HHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhh
Confidence 111111111110 00 1367788899999999999888888765
No 179
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.38 E-value=4.4e-06 Score=82.45 Aligned_cols=124 Identities=14% Similarity=0.083 Sum_probs=83.8
Q ss_pred CCHHHHHHHHHHHhcccC---CHhHHHHHHHHHHHhccHHHHHHHHHHHHhhcCCchhhhccccHHHHHHHHHHhhcccc
Q 002379 529 GQIRAAISEIDRIIVFKL---SVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWS 605 (929)
Q Consensus 529 g~~~~A~~~~~~al~~~~---~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~ 605 (929)
++|..+...+...++... ....+...|.++...|++++|+..|++++.+.|+..
T Consensus 13 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~----------------------- 69 (168)
T CHL00033 13 KTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPY----------------------- 69 (168)
T ss_pred cccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccch-----------------------
Confidence 345555555555543333 234466666666666777777776666666544322
Q ss_pred hHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Q 002379 606 PADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILY 685 (929)
Q Consensus 606 ~A~~~l~l~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~ 685 (929)
..+.++.++|.++...|++++|+..+++++.++|.....+..+|.++.
T Consensus 70 --------------------------------~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~ 117 (168)
T CHL00033 70 --------------------------------DRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICH 117 (168)
T ss_pred --------------------------------hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence 123467889999999999999999999999999998888888888888
Q ss_pred -------HcCCHHHH-------HHHHHHHHhhccch
Q 002379 686 -------DTGHREEA-------LSRAEKSISIERTF 707 (929)
Q Consensus 686 -------~~g~~~eA-------~~~~~~al~~~p~~ 707 (929)
..|++++| +..|++++..+|+.
T Consensus 118 ~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~ 153 (168)
T CHL00033 118 YRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGN 153 (168)
T ss_pred HhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 77777644 44444555555644
No 180
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.37 E-value=0.0074 Score=65.78 Aligned_cols=376 Identities=15% Similarity=0.083 Sum_probs=231.4
Q ss_pred HHHHHHHHHHHHhC--CHHHHHHHHHHHhcccCC----HhHHHHHHHHH-HHhccHHHHHHHHHHHHhhcCCchhh-hcc
Q 002379 516 FPYKYRAVAKMEEG--QIRAAISEIDRIIVFKLS----VDCLELRAWLF-IAADDYESALRDTLALLALESNYMMF-HGR 587 (929)
Q Consensus 516 ~a~~~~a~~~~~~g--~~~~A~~~~~~al~~~~~----~~~~~~~a~~~-~~~g~~~~A~~~~~~al~~~p~~~~~-~~~ 587 (929)
.++..+|..+...| +...++++++......+. ......+|.++ ....+.+.|...++++..+...-+.+ ..+
T Consensus 8 ~aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvK 87 (629)
T KOG2300|consen 8 EALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVK 87 (629)
T ss_pred HHHHHHHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhh
Confidence 45667788888888 899999999999988873 23355566554 55789999999999999887666643 345
Q ss_pred ccHHHHHHHHHHhhc-ccchHHHHHHhhhccccccccccHHHHHHHHhcCCCCh----HHHHHHHHHHHHhcCHHHHHHH
Q 002379 588 VSGDHLVKLLNHHVR-SWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKS----FLRFRQSLLLLRLNCQKAAMRC 662 (929)
Q Consensus 588 ~~a~~ll~~~~~~~~-~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~~p~~~----~~~~~lg~~~~~~g~~~~A~~~ 662 (929)
..+..+++.++.... .+..+...+ .++++.....+ ...+.++.++....++..|.+.
T Consensus 88 f~a~SlLa~lh~~~~~s~~~~KalL------------------rkaielsq~~p~wsckllfQLaql~~idkD~~sA~el 149 (629)
T KOG2300|consen 88 FQAASLLAHLHHQLAQSFPPAKALL------------------RKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALEL 149 (629)
T ss_pred hHHHHHHHHHHHHhcCCCchHHHHH------------------HHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHH
Confidence 578888999987776 556665555 78888766554 3567888899999999999988
Q ss_pred HHHHHhcCCch----HHHHHHH--HHHHHHcCC---HHHHHHHHHHHHhhc---cch-----HHHHHHHHHHHhcCCCCC
Q 002379 663 LRLARNHSSSE----HERLVYE--GWILYDTGH---REEALSRAEKSISIE---RTF-----EAFFLKAYILADTNLDPE 725 (929)
Q Consensus 663 l~~al~~~p~~----~~~~~~l--g~~~~~~g~---~~eA~~~~~~al~~~---p~~-----~~~~~l~~~l~~~~~~~~ 725 (929)
+.-..+....- ....+.+ +.++....+ ...+.....+..+.. |.. ..|..+..++....-...
T Consensus 150 Lavga~sAd~~~~~ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl~lql~yy~~~gq~r 229 (629)
T KOG2300|consen 150 LAVGAESADHICFPYLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFYLVLQLSYYLLPGQVR 229 (629)
T ss_pred HhccccccchhhhHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhcccchh
Confidence 54322221111 1222222 334443333 334444444444332 222 122223333332222233
Q ss_pred ChHHHHHHHHHHhhchhcc---C------chh------------HHHHHHHHH--HHHcCCHHHHHHHHHHHHcC-----
Q 002379 726 SSTYVIQLLEEALRCPSDG---L------RKG------------QALNNLGSI--YVECGKLDQAENCYINALDI----- 777 (929)
Q Consensus 726 ~~~~a~~~~e~Al~~~~~a---l------~~~------------~a~~~lg~~--~~~~g~~~eA~~~~~~al~~----- 777 (929)
....+++++++.+...... . .+. .++..+-.+ -.-.|-+++|.++-++++..
T Consensus 230 t~k~~lkQLQ~siqtist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklk 309 (629)
T KOG2300|consen 230 TVKPALKQLQDSIQTISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLK 309 (629)
T ss_pred hhHHHHHHHHHHHhccCCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcc
Confidence 3344455555555544432 0 010 111111111 12346677788777777755
Q ss_pred -CC--H--------HHHHHHHHHHHHhCCHHHHHHHHHHHHHHc---cC-------CHHHHHHHh----hhCCHHHHHHH
Q 002379 778 -KH--T--------RAHQGLARVYYLKNELKAAYDEMTKLLEKA---QY-------SASAFEKRS----EYSDREMAKND 832 (929)
Q Consensus 778 -~~--~--------~a~~~la~~~~~~g~~~~A~~~~~~al~~~---p~-------~~~~~~~lg----~~g~~~~A~~~ 832 (929)
.+ . ..+..++.+-.-.|++.+|++....+.+.. |. .+.....+| ..+.++.|...
T Consensus 310 q~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~h 389 (629)
T KOG2300|consen 310 QADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFH 389 (629)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHH
Confidence 11 1 244556677778899999998887776543 33 123455566 45788999999
Q ss_pred HHHHHhcCCC-C--cHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-----------hHHHHHHHHHHHcCCHHHHHH
Q 002379 833 LNMATQLDPL-R--TYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDL-----------QMLHLRAAFYESIGDLTSAIR 898 (929)
Q Consensus 833 ~~~al~l~p~-~--~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~-----------~~~~~la~~~~~~g~~~~A~~ 898 (929)
|..|+++-.. + +..-.++|.+|...|+-+.--+.++. +.|.+ ..++..|...+.++++.+|..
T Consensus 390 f~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~---i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~ 466 (629)
T KOG2300|consen 390 FIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDL---IGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKR 466 (629)
T ss_pred HHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHh---cCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 9999987542 2 33456899999998876554444433 34442 123355888889999999999
Q ss_pred HHHHHhccCCCCHHH
Q 002379 899 DSQAALCLDPNHMET 913 (929)
Q Consensus 899 ~~~~al~l~P~~~~a 913 (929)
..++.++.. +..+.
T Consensus 467 ~l~e~Lkma-naed~ 480 (629)
T KOG2300|consen 467 FLRETLKMA-NAEDL 480 (629)
T ss_pred HHHHHHhhc-chhhH
Confidence 999999987 44443
No 181
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.36 E-value=4.4e-05 Score=72.36 Aligned_cols=127 Identities=22% Similarity=0.183 Sum_probs=108.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHcC---CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHhhhCCH
Q 002379 750 ALNNLGSIYVECGKLDQAENCYINALDI---KHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDR 826 (929)
Q Consensus 750 a~~~lg~~~~~~g~~~eA~~~~~~al~~---~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~g~~ 826 (929)
-.+.||..+.+.|++.+|...|++++.- +++..+.+++++.+..+++.+|...++++.+.+|..
T Consensus 91 nr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~------------- 157 (251)
T COG4700 91 NRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAF------------- 157 (251)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCcc-------------
Confidence 3678899999999999999999999986 778899999999999999999999999888876542
Q ss_pred HHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 002379 827 EMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLHLRAAFYESIGDLTSAIRDSQAAL 904 (929)
Q Consensus 827 ~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al 904 (929)
..++....+|.+|...|++.+|...|+.++...|+.......+..+.++|+.++|...+....
T Consensus 158 ---------------r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 158 ---------------RSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGPQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred ---------------CCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 356677788999999999999999999999999998877777888889998887776655443
No 182
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.35 E-value=0.00086 Score=70.88 Aligned_cols=71 Identities=18% Similarity=0.029 Sum_probs=59.4
Q ss_pred HHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHc-CCHHHHHHHHHHHhcc
Q 002379 836 ATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLHLRAAFYESI-GDLTSAIRDSQAALCL 906 (929)
Q Consensus 836 al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~la~~~~~~-g~~~~A~~~~~~al~l 906 (929)
...+.|++.+.....+..-+..|++..|...-+.+....|....+.+++.+-... ||-.+...++-++++-
T Consensus 321 L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 321 LESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 3456678888888888888889999999999888888888888888888888775 9999999999888874
No 183
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.34 E-value=0.00092 Score=75.35 Aligned_cols=242 Identities=16% Similarity=0.027 Sum_probs=126.0
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch--HHHHHHHHHHH
Q 002379 641 FLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF--EAFFLKAYILA 718 (929)
Q Consensus 641 ~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~--~~~~~l~~~l~ 718 (929)
..|-..+.-|...|+|+.|.+.|.++- ....--.+|-+.|+++.|.+.-++... |.. ..|...+..+.
T Consensus 766 ~yy~~iadhyan~~dfe~ae~lf~e~~--------~~~dai~my~k~~kw~da~kla~e~~~--~e~t~~~yiakaedld 835 (1636)
T KOG3616|consen 766 GYYGEIADHYANKGDFEIAEELFTEAD--------LFKDAIDMYGKAGKWEDAFKLAEECHG--PEATISLYIAKAEDLD 835 (1636)
T ss_pred ccchHHHHHhccchhHHHHHHHHHhcc--------hhHHHHHHHhccccHHHHHHHHHHhcC--chhHHHHHHHhHHhHH
Confidence 345567777888888888888887642 222234567778888888877776653 333 44555555555
Q ss_pred hcCCC--CCChHHHHHHHHHHhhchhccCc------------h---hHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCHH
Q 002379 719 DTNLD--PESSTYVIQLLEEALRCPSDGLR------------K---GQALNNLGSIYVECGKLDQAENCYINALDIKHTR 781 (929)
Q Consensus 719 ~~~~~--~~~~~~a~~~~e~Al~~~~~al~------------~---~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~~~ 781 (929)
..|.- .+..+-.++..++|+..|.+.-. + .+....+|.-+...|+...|...|-++-...
T Consensus 836 ehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d~k--- 912 (1636)
T KOG3616|consen 836 EHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGDFK--- 912 (1636)
T ss_pred hhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhhHH---
Confidence 54410 00111112233344444433211 0 2556667777777788888877776654431
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHH--------------HHHccCCH-HHHHHHh----------hhCCHHHHHHHHHHH
Q 002379 782 AHQGLARVYYLKNELKAAYDEMTKL--------------LEKAQYSA-SAFEKRS----------EYSDREMAKNDLNMA 836 (929)
Q Consensus 782 a~~~la~~~~~~g~~~~A~~~~~~a--------------l~~~p~~~-~~~~~lg----------~~g~~~~A~~~~~~a 836 (929)
.-.+.|...+-+++|....+.- -.+..+-+ ..+...| ..+-++-|...-+-+
T Consensus 913 ---aavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~ 989 (1636)
T KOG3616|consen 913 ---AAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIA 989 (1636)
T ss_pred ---HHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHh
Confidence 1112222333333333221110 00000000 0011111 123333333333322
Q ss_pred HhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHH----HH-HHHHHHcC-CHHHHHHHH
Q 002379 837 TQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLH----LR-AAFYESIG-DLTSAIRDS 900 (929)
Q Consensus 837 l~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~----~l-a~~~~~~g-~~~~A~~~~ 900 (929)
. ....+..+..++..+...|++++|-+.|-.+++++.-+..|. .+ -.-..+.| ..++|...|
T Consensus 990 ~--k~k~~~vhlk~a~~ledegk~edaskhyveaiklntynitwcqavpsrfd~e~ir~gnkpe~av~mf 1057 (1636)
T KOG3616|consen 990 A--KDKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLNTYNITWCQAVPSRFDAEFIRAGNKPEEAVEMF 1057 (1636)
T ss_pred h--hccCccchhHHhhhhhhccchhhhhHhhHHHhhcccccchhhhcccchhhHHHHHcCCChHHHHHHh
Confidence 2 234567888899999999999999999999999987665544 11 11222334 556666555
No 184
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.34 E-value=4.9e-06 Score=88.83 Aligned_cols=144 Identities=17% Similarity=0.091 Sum_probs=93.8
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhcccCCHhHHHHHHHHHHHhccHHHHHHHHHHHHhhcCCchhhhccccHHHHHHHH
Q 002379 518 YKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLL 597 (929)
Q Consensus 518 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~ll~~~ 597 (929)
....|..+++.|+|..|...|++++..-. |...-+.++.... .++ +..++..++.+
T Consensus 211 ~ke~Gn~~fK~gk~~~A~~~Yerav~~l~-----------~~~~~~~ee~~~~--~~~-----------k~~~~lNlA~c 266 (397)
T KOG0543|consen 211 KKERGNVLFKEGKFKLAKKRYERAVSFLE-----------YRRSFDEEEQKKA--EAL-----------KLACHLNLAAC 266 (397)
T ss_pred HHHhhhHHHhhchHHHHHHHHHHHHHHhh-----------ccccCCHHHHHHH--HHH-----------HHHHhhHHHHH
Confidence 45667777777777777777777762211 0000000111000 000 11344557777
Q ss_pred HHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHH
Q 002379 598 NHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERL 677 (929)
Q Consensus 598 ~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~ 677 (929)
+..++.|..|+++. +++|..+|++..++++.|.++..+|+|+.|+..|++++++.|+|..+.
T Consensus 267 ~lKl~~~~~Ai~~c------------------~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~ 328 (397)
T KOG0543|consen 267 YLKLKEYKEAIESC------------------NKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAAR 328 (397)
T ss_pred HHhhhhHHHHHHHH------------------HHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHH
Confidence 77777888776665 888888888888888888888888888888888888888888888777
Q ss_pred HHHHHHHHHcCCHHHH-HHHHHHHHhh
Q 002379 678 VYEGWILYDTGHREEA-LSRAEKSISI 703 (929)
Q Consensus 678 ~~lg~~~~~~g~~~eA-~~~~~~al~~ 703 (929)
..+..+-.+..++.+. .+.|.+++..
T Consensus 329 ~el~~l~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 329 AELIKLKQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 7777776665555444 5666666654
No 185
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.33 E-value=1.8e-06 Score=71.82 Aligned_cols=70 Identities=26% Similarity=0.347 Sum_probs=63.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCchHHH-HHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHH
Q 002379 851 AAVLMDDQKEVEAVEELSKAIAFKPDLQMLH-LRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNRA 920 (929)
Q Consensus 851 a~~~~~~g~~~eA~~~l~kal~~~p~~~~~~-~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~l 920 (929)
..+|...+++++|++.+++++.++|+++..+ .+|.++..+|++++|++.|+++++.+|+++.+.....++
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~l 72 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAML 72 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHhc
Confidence 5678999999999999999999999988666 679999999999999999999999999999988887765
No 186
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.33 E-value=1.2e-05 Score=74.40 Aligned_cols=114 Identities=16% Similarity=0.121 Sum_probs=85.1
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHhhhCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcC
Q 002379 779 HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQ 858 (929)
Q Consensus 779 ~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g 858 (929)
++..++.-|......|++++|++.++.+....|-.. -...+...+|.+|.+.+
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~---------------------------ya~qAqL~l~yayy~~~ 61 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGE---------------------------YAEQAQLDLAYAYYKQG 61 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCc---------------------------ccHHHHHHHHHHHHHcc
Confidence 445666666666677777777777666666665432 23456677888888888
Q ss_pred CHHHHHHHHHHHHhcCCCch----HHHHHHHHHHHcCC---------------HHHHHHHHHHHhccCCCCHHHHHHHHH
Q 002379 859 KEVEAVEELSKAIAFKPDLQ----MLHLRAAFYESIGD---------------LTSAIRDSQAALCLDPNHMETLDLYNR 919 (929)
Q Consensus 859 ~~~eA~~~l~kal~~~p~~~----~~~~la~~~~~~g~---------------~~~A~~~~~~al~l~P~~~~a~~~~~~ 919 (929)
++++|+..+++-++++|+++ .++.+|.++..+.. ..+|...|++++...|++..+-....|
T Consensus 62 ~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~dA~~R 141 (142)
T PF13512_consen 62 DYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAADARKR 141 (142)
T ss_pred CHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHHHHHhc
Confidence 88888888888888888875 34466888887766 889999999999999999888776654
No 187
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.32 E-value=0.00012 Score=88.22 Aligned_cols=230 Identities=11% Similarity=0.012 Sum_probs=186.9
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-ccch-HHHHHHHHHHHhcCCCCCChHHHHHH
Q 002379 656 QKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISI-ERTF-EAFFLKAYILADTNLDPESSTYVIQL 733 (929)
Q Consensus 656 ~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~-~p~~-~~~~~l~~~l~~~~~~~~~~~~a~~~ 733 (929)
-.+..+.|++.+..+|+..-.|..+-.-+.+.++.++|.+.+++|+.. ++.- +
T Consensus 1440 ~pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REee------------------------- 1494 (1710)
T KOG1070|consen 1440 APESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEE------------------------- 1494 (1710)
T ss_pred CCcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhH-------------------------
Confidence 344567888999999999999999999999999999999999999963 3322 1
Q ss_pred HHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccC
Q 002379 734 LEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI-KHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQY 812 (929)
Q Consensus 734 ~e~Al~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~-~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 812 (929)
++...|..+-+....-|.-+.-.+.|++|-+. ++...+..|..+|..-+++++|.+.|+..++...+
T Consensus 1495 ------------EKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q 1562 (1710)
T KOG1070|consen 1495 ------------EKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQ 1562 (1710)
T ss_pred ------------HHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcc
Confidence 01233444444444456667778899999999 55578999999999999999999999999999988
Q ss_pred CHHHHHHHh----hhCCHHHHHHHHHHHHhcCCC--CcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHH-HHHH
Q 002379 813 SASAFEKRS----EYSDREMAKNDLNMATQLDPL--RTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLH-LRAA 885 (929)
Q Consensus 813 ~~~~~~~lg----~~g~~~~A~~~~~~al~l~p~--~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~-~la~ 885 (929)
....|...+ ...+.+.|...+.+|++--|. ........|.+-++.|+.+.+...|+-.+.-+|.-..+| ....
T Consensus 1563 ~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid 1642 (1710)
T KOG1070|consen 1563 TRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYID 1642 (1710)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHH
Confidence 888888888 345668899999999999996 677788899999999999999999999999999886555 5577
Q ss_pred HHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHh
Q 002379 886 FYESIGDLTSAIRDSQAALCLDPNHMETLDLYNRARD 922 (929)
Q Consensus 886 ~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~l~~ 922 (929)
.-.+.|+.+.+...|++++.+.=.-..+...+.+..+
T Consensus 1643 ~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLe 1679 (1710)
T KOG1070|consen 1643 MEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLE 1679 (1710)
T ss_pred HHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHH
Confidence 7788999999999999999887666666666666544
No 188
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.31 E-value=0.00081 Score=68.92 Aligned_cols=61 Identities=30% Similarity=0.410 Sum_probs=26.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcc
Q 002379 751 LNNLGSIYVECGKLDQAENCYINALDIKH--TRAHQGLARVYYLKNELKAAYDEMTKLLEKAQ 811 (929)
Q Consensus 751 ~~~lg~~~~~~g~~~eA~~~~~~al~~~~--~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p 811 (929)
+..++..+...+++++|...+..++...+ ...+..++..+...+..+++...+.+++...|
T Consensus 205 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (291)
T COG0457 205 LLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDP 267 (291)
T ss_pred HHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 33444444444444555555544444422 23333444444433334444444444444443
No 189
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.30 E-value=0.004 Score=70.40 Aligned_cols=51 Identities=22% Similarity=0.085 Sum_probs=35.5
Q ss_pred HHHHhCCHHHHHHHHHHHhcccCCHhHHHHHHHHHHHhccHHHHHHHHHHH
Q 002379 524 AKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLAL 574 (929)
Q Consensus 524 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a 574 (929)
+-...++|.+|+..++.+-..+.....|-..+.-|...|+|+.|.+.|.++
T Consensus 741 aai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~ 791 (1636)
T KOG3616|consen 741 AAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEA 791 (1636)
T ss_pred HHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhc
Confidence 344556777787777776655545556667777778888888888777654
No 190
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.28 E-value=0.02 Score=67.25 Aligned_cols=405 Identities=13% Similarity=0.017 Sum_probs=218.3
Q ss_pred hhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccC-CHhHHHHHHHHHHHhccHHHHHHHHHHH
Q 002379 496 LGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLAL 574 (929)
Q Consensus 496 ~~~~Ai~~~~kal~l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~~g~~~~A~~~~~~a 574 (929)
+.+.|++...+.++..|+...+....|.++.++|..++|..+++..-...+ +...+..+-.+|..++++++|...|+++
T Consensus 24 qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~ 103 (932)
T KOG2053|consen 24 QFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERA 103 (932)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 344777788888888888888888888888888888888876666554444 3333556677777888888888888888
Q ss_pred HhhcCCchhhhccccHHHHHHHHHHhhcccc----hHHHHHHh-----hhccccc----------cccc-------cHHH
Q 002379 575 LALESNYMMFHGRVSGDHLVKLLNHHVRSWS----PADCWIKL-----YDRWSSV----------DDIG-------SLAV 628 (929)
Q Consensus 575 l~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~----~A~~~l~l-----~~~~~~~----------~~~~-------~l~~ 628 (929)
+..+|+.. .+.-+-..|.+.+.|. .|..+.+. |-.|+.. +... +-..
T Consensus 104 ~~~~P~ee-------ll~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m 176 (932)
T KOG2053|consen 104 NQKYPSEE-------LLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKM 176 (932)
T ss_pred HhhCCcHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHH
Confidence 88888732 2222223332222222 22222221 2222220 0000 0112
Q ss_pred HHHHHhcC-CCChH-HHHHHHHHHHHhcCHHHHHHHHHH-HH-hcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 002379 629 INQMLIND-PGKSF-LRFRQSLLLLRLNCQKAAMRCLRL-AR-NHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIE 704 (929)
Q Consensus 629 ~~~al~~~-p~~~~-~~~~lg~~~~~~g~~~~A~~~l~~-al-~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~ 704 (929)
+++.++.. +-... =....-.++..+|++++|...+.. .. ...+.+...-..-+..+...+++.+-.+...+++...
T Consensus 177 ~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 177 VQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 23333333 11111 112233456778999999998843 23 3344444455566778888999999999999999988
Q ss_pred cch-HHHHH-HHHHHHhcCCCC-CChHHHHHHHHHHhhchhccCc-----hhHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 002379 705 RTF-EAFFL-KAYILADTNLDP-ESSTYVIQLLEEALRCPSDGLR-----KGQALNNLGSIYVECGKLDQAENCYINALD 776 (929)
Q Consensus 705 p~~-~~~~~-l~~~l~~~~~~~-~~~~~a~~~~e~Al~~~~~al~-----~~~a~~~lg~~~~~~g~~~eA~~~~~~al~ 776 (929)
+++ ..+.. .-.++......+ +........++..++...+.+. |--++..+-.-+..-|+.+++...|-+-..
T Consensus 257 ~Ddy~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~kfg 336 (932)
T KOG2053|consen 257 NDDYKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEEMLSYYFKKFG 336 (932)
T ss_pred CcchHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChHHHHHHHHHHhC
Confidence 886 33222 222222221111 1111112223333332222221 224444444444566777776655533221
Q ss_pred CC--------------CHH------------------------HHHHHHHHHHHhCCHH-----HHHHHHHHHHHHc---
Q 002379 777 IK--------------HTR------------------------AHQGLARVYYLKNELK-----AAYDEMTKLLEKA--- 810 (929)
Q Consensus 777 ~~--------------~~~------------------------a~~~la~~~~~~g~~~-----~A~~~~~~al~~~--- 810 (929)
.. +++ .+...-.+....|.++ .-..++++.....
T Consensus 337 ~kpcc~~Dl~~yl~~l~~~q~~~l~~~l~~~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~g 416 (932)
T KOG2053|consen 337 DKPCCAIDLNHYLGHLNIDQLKSLMSKLVLADDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKG 416 (932)
T ss_pred CCcHhHhhHHHhhccCCHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHhcc
Confidence 10 000 1111112222333221 1122222222111
Q ss_pred --------cC---CHHHHHHHh------------hhCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHH
Q 002379 811 --------QY---SASAFEKRS------------EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEEL 867 (929)
Q Consensus 811 --------p~---~~~~~~~lg------------~~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l 867 (929)
|. ..+.+..++ ..+..-+|+-.++..+..+|.+...-..+-.+|.-.|-+..|.+.|
T Consensus 417 ls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y 496 (932)
T KOG2053|consen 417 LSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELY 496 (932)
T ss_pred ccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHH
Confidence 11 112222222 2345578999999999999999999999999999999999999998
Q ss_pred HHHHhcC--CCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Q 002379 868 SKAIAFK--PDLQMLHLRAAFYESIGDLTSAIRDSQAALCLDP 908 (929)
Q Consensus 868 ~kal~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P 908 (929)
+.. .+. ..+..-|..-..+...|++..|...+...+++.-
T Consensus 497 ~tL-dIK~IQ~DTlgh~~~~~~~t~g~~~~~s~~~~~~lkfy~ 538 (932)
T KOG2053|consen 497 KTL-DIKNIQTDTLGHLIFRRAETSGRSSFASNTFNEHLKFYD 538 (932)
T ss_pred Hhc-chHHhhhccchHHHHHHHHhcccchhHHHHHHHHHHHHh
Confidence 743 211 1222233334445556777777777777776643
No 191
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.27 E-value=2.1e-06 Score=70.33 Aligned_cols=66 Identities=27% Similarity=0.258 Sum_probs=50.2
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCchHHH-HHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHH
Q 002379 855 MDDQKEVEAVEELSKAIAFKPDLQMLH-LRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNRA 920 (929)
Q Consensus 855 ~~~g~~~eA~~~l~kal~~~p~~~~~~-~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~l 920 (929)
++.|++++|++.|++++..+|++.... .+|.+|...|++++|...+++++..+|+++..+.++++|
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~i 68 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQI 68 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhcC
Confidence 567788888888888888888776554 568888888888888888888888888887777776654
No 192
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.27 E-value=0.00047 Score=78.77 Aligned_cols=66 Identities=24% Similarity=0.241 Sum_probs=42.5
Q ss_pred hcCC-CCcHHHHHHHHHHHhcCCHHHHHHHHHHH------Hhc----------------CC------Cch----HHHHHH
Q 002379 838 QLDP-LRTYPYRYRAAVLMDDQKEVEAVEELSKA------IAF----------------KP------DLQ----MLHLRA 884 (929)
Q Consensus 838 ~l~p-~~~~~~~~la~~~~~~g~~~eA~~~l~ka------l~~----------------~p------~~~----~~~~la 884 (929)
.++| .++..+..-+..+....+|++|...+-.+ +.+ .| +.. .+-..|
T Consensus 1073 DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqva 1152 (1416)
T KOG3617|consen 1073 DLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVA 1152 (1416)
T ss_pred hcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHH
Confidence 3455 35556666667777777888887765433 322 12 111 122569
Q ss_pred HHHHHcCCHHHHHHHHHHH
Q 002379 885 AFYESIGDLTSAIRDSQAA 903 (929)
Q Consensus 885 ~~~~~~g~~~~A~~~~~~a 903 (929)
.++.++|.|..|.+-|.+|
T Consensus 1153 e~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1153 ELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred HHHHhccchHHHHHHHhhh
Confidence 9999999999999888776
No 193
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.26 E-value=8e-07 Score=91.25 Aligned_cols=194 Identities=14% Similarity=0.060 Sum_probs=145.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHH
Q 002379 677 LVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGS 756 (929)
Q Consensus 677 ~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~l~~~l~~~~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~ 756 (929)
.-..|.-|+++|+|++|+.+|.+++..+|.+ +..+.+.+.
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~N----------------------------------------pV~~~NRA~ 139 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHN----------------------------------------PVYHINRAL 139 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCC----------------------------------------ccchhhHHH
Confidence 3457999999999999999999999999976 334778889
Q ss_pred HHHHcCCHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHhhhCCHHHHHHHHH
Q 002379 757 IYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLN 834 (929)
Q Consensus 757 ~~~~~g~~~eA~~~~~~al~~~--~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~g~~~~A~~~~~ 834 (929)
+|++.+++..|......|+.++ ...+|...+.+-..+|+..+|.+.++.++++.|++.+..-..+......++.
T Consensus 140 AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~Sl~E~~---- 215 (536)
T KOG4648|consen 140 AYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNMEAKKDCETVLALEPKNIELKKSLARINSLRERK---- 215 (536)
T ss_pred HHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHhcchHhhh----
Confidence 9999999999999999999984 4568999999999999999999999999999999877644443222211111
Q ss_pred HHHhcCCCCcHH---------HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 002379 835 MATQLDPLRTYP---------YRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLHLRAAFYESIGDLTSAIRDSQAALC 905 (929)
Q Consensus 835 ~al~l~p~~~~~---------~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 905 (929)
-+.+..|....+ ....|..+...|.++.++..+.+-+....++..+..-+..|.+.-+++.|+...-++..
T Consensus 216 I~~KsT~G~~~A~Q~~~Q~l~~K~~G~~Fsk~~~~~~~i~~~~~~~A~~~~~~~L~~~~~~~~KI~~~~~~~~~~~~~~~ 295 (536)
T KOG4648|consen 216 IATKSTPGFTPARQGMIQILPIKKPGYKFSKKAMRSVPVVDVVSPRATIDDSNQLRISDEDIDKIFNSNCGIIEEVKKTN 295 (536)
T ss_pred HHhhcCCCCCccccchhhhccccCcchhhhhhhccccceeEeeccccccCccccCcccHHHHHHHhhcchhHHHHHHhcC
Confidence 111112221111 22346667778888889888887776665555444447888888999999999999999
Q ss_pred cCCCCHHHH
Q 002379 906 LDPNHMETL 914 (929)
Q Consensus 906 l~P~~~~a~ 914 (929)
.+|....+.
T Consensus 296 ~~~s~~~~~ 304 (536)
T KOG4648|consen 296 PKPTPMPDT 304 (536)
T ss_pred CCCCcCccc
Confidence 988765433
No 194
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=98.25 E-value=1.2e-06 Score=98.88 Aligned_cols=114 Identities=15% Similarity=0.082 Sum_probs=74.9
Q ss_pred CCCCCEEEEEcCeEEEeehhHHhccCHHHHHHhcCCCCcCCCC------------eeEecCCCCCHHHHHHHhhhHccCC
Q 002379 215 EEDDSVTFCVRDKEISFVRNKIASLSSPFKAMLYGGFVESKRK------------TIDFSHDGVSVEGLRAVEVYTRTSR 282 (929)
Q Consensus 215 ~~~~~v~~~v~~~~~~~hr~iLaa~S~~F~~mf~~~~~e~~~~------------~i~~~~~~~~~~~~~~~l~~~Yt~~ 282 (929)
+...||||.||++.|+|||.||++||++|+.+|...-.-|..+ +|.+ ++|.|..|..+|+||||++
T Consensus 556 ds~hDVtf~vg~~~F~aHKfIl~~rs~flrkL~l~~~~~s~~~dIY~~~~~~~~~~~~v--e~i~p~mfe~lL~~iYtdt 633 (1267)
T KOG0783|consen 556 DSFHDVTFYVGTSMFHAHKFILCARSSFLRKLLLQKKKSSVSNDIYIEEITQSHSTIRV--EDIPPLMFEILLHYIYTDT 633 (1267)
T ss_pred cccceEEEEecCeecccceEEEEeccHHHHHHHHhhccccccceeeeecccccCceeee--ccCCHHHHHHHHHHHhccc
Confidence 3444599999999999999999999999999996543322222 4556 8999999999999999997
Q ss_pred CCC-CChhHHHHHHHHhchhChHhHHHHHHHHHHhhc--CChhhHHHHHHHHHHhChHHHHHHHHHH
Q 002379 283 VDL-FCPGIVLELLSFANRFCCEEMKSACDAHLASLV--GDIEDALILIDYGLEERATLLVASCLQV 346 (929)
Q Consensus 283 ~~~-~~~~~~~~ll~~A~~~~~~~l~~~C~~~l~~~~--~~~~n~~~~~~~a~~~~~~~L~~~c~~~ 346 (929)
+-- ..++.+..+ +| .. +.+++ . +.+|-.+..+++.++..+|......+
T Consensus 634 ~~~P~heDdidci-----~f--s~--------~k~N~~qr-trtCeMl~~~lekf~l~el~~~~~s~ 684 (1267)
T KOG0783|consen 634 LLSPWHEDDIDCI-----RF--SP--------LKENLSQR-TRTCEMLANLLEKFHLAELLPFSVSR 684 (1267)
T ss_pred ccCCccccchhhh-----hc--cc--------cccChhhc-ccHHHHHHHHHhhhhHHhhhhhhhhc
Confidence 541 222332211 00 00 11111 2 45566666777777777776655433
No 195
>PRK15331 chaperone protein SicA; Provisional
Probab=98.25 E-value=1.5e-05 Score=75.34 Aligned_cols=106 Identities=7% Similarity=-0.099 Sum_probs=92.3
Q ss_pred HHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHH
Q 002379 632 MLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFF 711 (929)
Q Consensus 632 al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~ 711 (929)
+..+.++.-...+..|.-++..|++++|...|+-....+|.+++.+..||.++..+++|++|+..|..+..+++++
T Consensus 29 l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~d---- 104 (165)
T PRK15331 29 VHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKND---- 104 (165)
T ss_pred HhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCC----
Confidence 3444556667788899999999999999999999999999999999999999999999999999999998887766
Q ss_pred HHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC
Q 002379 712 LKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI 777 (929)
Q Consensus 712 ~l~~~l~~~~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~ 777 (929)
+...+..|.+++..|+.+.|..+|+.++..
T Consensus 105 ------------------------------------p~p~f~agqC~l~l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 105 ------------------------------------YRPVFFTGQCQLLMRKAAKARQCFELVNER 134 (165)
T ss_pred ------------------------------------CCccchHHHHHHHhCCHHHHHHHHHHHHhC
Confidence 333677899999999999999999999885
No 196
>PRK15331 chaperone protein SicA; Provisional
Probab=98.24 E-value=1.6e-05 Score=75.12 Aligned_cols=105 Identities=14% Similarity=0.027 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHh----hhCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhc
Q 002379 782 AHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS----EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDD 857 (929)
Q Consensus 782 a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg----~~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~ 857 (929)
..+..|.-++..|++++|...|+-+...+|.+.+.|..+| ..+++++|+..|..+..++++++.+.+..|.+++.+
T Consensus 39 ~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l 118 (165)
T PRK15331 39 GLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLM 118 (165)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHh
Confidence 4455555666666666666666655555555544444444 234444444445555555555666666666666666
Q ss_pred CCHHHHHHHHHHHHhcCCCchHHHHHHHHH
Q 002379 858 QKEVEAVEELSKAIAFKPDLQMLHLRAAFY 887 (929)
Q Consensus 858 g~~~eA~~~l~kal~~~p~~~~~~~la~~~ 887 (929)
|+.+.|+..|+.++. .|.+..+..++..+
T Consensus 119 ~~~~~A~~~f~~a~~-~~~~~~l~~~A~~~ 147 (165)
T PRK15331 119 RKAAKARQCFELVNE-RTEDESLRAKALVY 147 (165)
T ss_pred CCHHHHHHHHHHHHh-CcchHHHHHHHHHH
Confidence 666666666666665 35554444444443
No 197
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.23 E-value=2.2e-05 Score=82.56 Aligned_cols=102 Identities=13% Similarity=0.174 Sum_probs=75.1
Q ss_pred ChHHHHHHHHHH-HHhcCHHHHHHHHHHHHhcCCch---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHH
Q 002379 639 KSFLRFRQSLLL-LRLNCQKAAMRCLRLARNHSSSE---HERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKA 714 (929)
Q Consensus 639 ~~~~~~~lg~~~-~~~g~~~~A~~~l~~al~~~p~~---~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~l~ 714 (929)
+...++..+..+ ...|+|++|+..|++.++..|++ +.+++.+|.+|+..|++++|+..|++++...|++
T Consensus 141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s------- 213 (263)
T PRK10803 141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKS------- 213 (263)
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC-------
Confidence 345667777665 55688899998899988888887 5788888888888888888888888888888866
Q ss_pred HHHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC
Q 002379 715 YILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI 777 (929)
Q Consensus 715 ~~l~~~~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~ 777 (929)
....++++.+|.++...|++++|...|+++++.
T Consensus 214 ------------------------------~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 214 ------------------------------PKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred ------------------------------cchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 011345666666666666666666666666655
No 198
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.19 E-value=0.02 Score=63.47 Aligned_cols=378 Identities=13% Similarity=-0.007 Sum_probs=216.7
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccC-CHhHHHHHHHHHHHhccHHHHHHHHHHHHhhcCCchh
Q 002379 505 NYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLALLALESNYMM 583 (929)
Q Consensus 505 ~kal~l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~ 583 (929)
++-++.+|.+..+|+.+-.-+..+ -+++....|++.+..-| .|.+|.......+..++|+.-...|.+.|...-+-..
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDL 88 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDL 88 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhH
Confidence 567889999999999987766555 89999999999997777 7888888888888999999999999998865433221
Q ss_pred hhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHh---cCCCChHHHHHHHHHHH---------
Q 002379 584 FHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLI---NDPGKSFLRFRQSLLLL--------- 651 (929)
Q Consensus 584 ~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~---~~p~~~~~~~~lg~~~~--------- 651 (929)
| ...+..+....+....+...+ ...|+-++. .++.....|...+..+.
T Consensus 89 W------~lYl~YVR~~~~~~~~~r~~m--------------~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~e 148 (656)
T KOG1914|consen 89 W------KLYLSYVRETKGKLFGYREKM--------------VQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYE 148 (656)
T ss_pred H------HHHHHHHHHHccCcchHHHHH--------------HHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHH
Confidence 1 112444444444444433333 222222222 35666666666555432
Q ss_pred HhcCHHHHHHHHHHHHhcCCchHH-HHHH-------------HHHHHHHcCCHHHHHHHHHHHHhhc-------cc----
Q 002379 652 RLNCQKAAMRCLRLARNHSSSEHE-RLVY-------------EGWILYDTGHREEALSRAEKSISIE-------RT---- 706 (929)
Q Consensus 652 ~~g~~~~A~~~l~~al~~~p~~~~-~~~~-------------lg~~~~~~g~~~eA~~~~~~al~~~-------p~---- 706 (929)
.+.+.+.-.+.|++|+..--.+.+ .|.. .-.+--....|..|...+++...+- |.
T Consensus 149 e~QRI~~vRriYqral~tPm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~ 228 (656)
T KOG1914|consen 149 ENQRITAVRRIYQRALVTPMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPK 228 (656)
T ss_pred HHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCC
Confidence 333566667788888765333321 1111 1122233445666666666554321 11
Q ss_pred h--------HHHHHHHHHHHhcCCCCCChHH----HHHHHHHHhhchhccCchhHHHHHHHHHHHHcCC-----------
Q 002379 707 F--------EAFFLKAYILADTNLDPESSTY----VIQLLEEALRCPSDGLRKGQALNNLGSIYVECGK----------- 763 (929)
Q Consensus 707 ~--------~~~~~l~~~l~~~~~~~~~~~~----a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~----------- 763 (929)
. +.|.+....-....+....-.. ..=.+++++.++-- .++.|+.-+..+...++
T Consensus 229 ~T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~---~peiWy~~s~yl~~~s~l~~~~~d~~~a 305 (656)
T KOG1914|consen 229 GTKDEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGY---HPEIWYDYSMYLIEISDLLTEKGDVPDA 305 (656)
T ss_pred CChHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHhhHHHHHhcccccc
Confidence 0 1122222111111111000000 01112222221111 12444444433333333
Q ss_pred ---HHHHHHHHHHHHcC---CCHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHccCCHH-HHHHHh----hhCCHHHH
Q 002379 764 ---LDQAENCYINALDI---KHTRAHQGLARVYYLKNE---LKAAYDEMTKLLEKAQYSAS-AFEKRS----EYSDREMA 829 (929)
Q Consensus 764 ---~~eA~~~~~~al~~---~~~~a~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~-~~~~lg----~~g~~~~A 829 (929)
.+++..+|++++.. .....++.++.--...-+ .+.--..+.+++.+...+.. +|...- ...-...|
T Consensus 306 ~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaa 385 (656)
T KOG1914|consen 306 KSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAA 385 (656)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHH
Confidence 67888889888876 223344444443322222 55566677777765444333 222222 33445677
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHH-HHHhcCCHHHHHHHHHHHHhcCCCchHHHHH-HHHHHHcCCHHHHHHHHHHHhcc
Q 002379 830 KNDLNMATQLDPLRTYPYRYRAA-VLMDDQKEVEAVEELSKAIAFKPDLQMLHLR-AAFYESIGDLTSAIRDSQAALCL 906 (929)
Q Consensus 830 ~~~~~~al~l~p~~~~~~~~la~-~~~~~g~~~eA~~~l~kal~~~p~~~~~~~l-a~~~~~~g~~~~A~~~~~~al~l 906 (929)
...|.++-+..-....++..-|. -|...++..-|...|+-.++..++.+.+-+. ...+...|+-..|...|++++..
T Consensus 386 R~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 386 RKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS 464 (656)
T ss_pred HHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence 78888877654444344444443 2446789999999999999999999877744 77888899999999999999886
No 199
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.18 E-value=4.8e-05 Score=72.89 Aligned_cols=107 Identities=18% Similarity=0.169 Sum_probs=78.8
Q ss_pred HHHHHHHHhhHHHHhcccHHHHHHHHHHHHhcCccccHHHHHHHHHHhchHHHHHHHHHhhhccCCCchhhhHHHHHHhh
Q 002379 417 QRMLALHQLGCVMFEREEYKDACYYFEAAADAGHIYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNL 496 (929)
Q Consensus 417 ~~a~~~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~~~a~la~~~~~~g~a~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 496 (929)
.++..+-.-|+-+|..|+|++|..-|..|++..|....-.-.-+|.+++.+...++ .
T Consensus 93 ~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~-----------------------k 149 (271)
T KOG4234|consen 93 EKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLR-----------------------K 149 (271)
T ss_pred HHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhh-----------------------h
Confidence 34566777899999999999999999999999887665333334444444333333 3
Q ss_pred hhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccC
Q 002379 497 GREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL 546 (929)
Q Consensus 497 ~~~Ai~~~~kal~l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~ 546 (929)
.+.||....++|+++|.+..++..+|.+|.+...|++|+..|.++++..|
T Consensus 150 ~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dP 199 (271)
T KOG4234|consen 150 WESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDP 199 (271)
T ss_pred HHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCc
Confidence 33677777888888888777777778888777778888888887777666
No 200
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.18 E-value=0.00097 Score=67.35 Aligned_cols=124 Identities=18% Similarity=0.180 Sum_probs=76.7
Q ss_pred HHHHHcCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh----CCHHHHHHHHHHHHHHccCCHHHHHHHh----hhCCHH
Q 002379 756 SIYVECGKLDQAENCYINALDIKHTRAHQGLARVYYLK----NELKAAYDEMTKLLEKAQYSASAFEKRS----EYSDRE 827 (929)
Q Consensus 756 ~~~~~~g~~~eA~~~~~~al~~~~~~a~~~la~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~lg----~~g~~~ 827 (929)
.++.++.+.+-|...++++.+++....+..||.++... ++..+|.-.|+..-++.|..+......+ .+++++
T Consensus 145 qI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~e 224 (299)
T KOG3081|consen 145 QILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYE 224 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHH
Confidence 44555566666666666666665555555555554442 3366666666666665555555444444 456677
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHH-HHHHHHhcCCCchH
Q 002379 828 MAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVE-ELSKAIAFKPDLQM 879 (929)
Q Consensus 828 ~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~-~l~kal~~~p~~~~ 879 (929)
+|...++.++..++.+++.+.++-.+-...|...++.+ .+.+....+|+++.
T Consensus 225 eAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~ 277 (299)
T KOG3081|consen 225 EAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPF 277 (299)
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchH
Confidence 77777777777777777777777777777777666554 44455556666653
No 201
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.17 E-value=3.9e-05 Score=78.44 Aligned_cols=113 Identities=12% Similarity=0.060 Sum_probs=94.1
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHhhhCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHH
Q 002379 783 HQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVE 862 (929)
Q Consensus 783 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~e 862 (929)
.++.|.-+++.|++..|...|...++..|++. ..+.+++.||.+++.+|++++
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~---------------------------~~~nA~yWLGe~~y~qg~y~~ 196 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNST---------------------------YTPNAYYWLGESLYAQGDYED 196 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCc---------------------------ccchhHHHHHHHHHhcccchH
Confidence 56677777888888888888888888887763 346788899999999999999
Q ss_pred HHHHHHHHHhcCCCch----HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHh
Q 002379 863 AVEELSKAIAFKPDLQ----MLHLRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNRARD 922 (929)
Q Consensus 863 A~~~l~kal~~~p~~~----~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~l~~ 922 (929)
|...|..+++-.|+++ .++-+|.+...+|+.++|...|+++++..|+.+.+.....++.+
T Consensus 197 Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~Ak~~~~~ 260 (262)
T COG1729 197 AAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKLAKVALKA 260 (262)
T ss_pred HHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHhc
Confidence 9999999999888774 44567999999999999999999999999999988877776644
No 202
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.14 E-value=5.2e-05 Score=69.12 Aligned_cols=99 Identities=18% Similarity=0.092 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCch---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHHHH
Q 002379 641 FLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE---HERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYIL 717 (929)
Q Consensus 641 ~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~---~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~l~~~l 717 (929)
.+++.+|.++-.+|+.++|+..|++++...... ..++..+|..+...|++++|+..+++++...|+.
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~---------- 71 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDD---------- 71 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc----------
Confidence 467888889999999999999999998865443 5678888999999999999999999988877763
Q ss_pred HhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 002379 718 ADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALD 776 (929)
Q Consensus 718 ~~~~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~ 776 (929)
.+. ......++.++...|+.++|+..+-.++.
T Consensus 72 ---------------~~~------------~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 72 ---------------ELN------------AALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred ---------------ccc------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 000 12234456667777777777777765553
No 203
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.14 E-value=0.00029 Score=71.47 Aligned_cols=176 Identities=15% Similarity=0.127 Sum_probs=127.3
Q ss_pred ChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCch---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch----HHHH
Q 002379 639 KSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE---HERLVYEGWILYDTGHREEALSRAEKSISIERTF----EAFF 711 (929)
Q Consensus 639 ~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~---~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~----~~~~ 711 (929)
.+..|+..|...++.|++++|+..|+.+....|.. ..+...++.++++.+++++|+...++-+.+.|++ -+++
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 46789999999999999999999999999988765 5688999999999999999999999999999988 3556
Q ss_pred HHHHHHHhcCCC----CCChHHHHHHHHHHhhchhccCc------------h--hHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002379 712 LKAYILADTNLD----PESSTYVIQLLEEALRCPSDGLR------------K--GQALNNLGSIYVECGKLDQAENCYIN 773 (929)
Q Consensus 712 ~l~~~l~~~~~~----~~~~~~a~~~~e~Al~~~~~al~------------~--~~a~~~lg~~~~~~g~~~eA~~~~~~ 773 (929)
..|.+....--+ +.....++..+++-+.-|-..-= . +.--..+|..|.+.|.+-.|+.-++.
T Consensus 113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~ 192 (254)
T COG4105 113 LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEE 192 (254)
T ss_pred HHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 666665433222 22223333344444433322200 0 12334578888999999999999999
Q ss_pred HHcC-----CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCH
Q 002379 774 ALDI-----KHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSA 814 (929)
Q Consensus 774 al~~-----~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 814 (929)
+++. ....++..+..+|..+|-.++|...-.-+-...|++.
T Consensus 193 v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~ 238 (254)
T COG4105 193 VLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDSQ 238 (254)
T ss_pred HHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCc
Confidence 8887 1235888888899999988888776544444445554
No 204
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=98.13 E-value=1.8e-06 Score=85.40 Aligned_cols=56 Identities=23% Similarity=0.223 Sum_probs=42.8
Q ss_pred EEEeehhHHhccCHHHHHHhcCCCCcCCC---------CeeEecCCCCCHHHHH-HHhhhHccCCCC
Q 002379 228 EISFVRNKIASLSSPFKAMLYGGFVESKR---------KTIDFSHDGVSVEGLR-AVEVYTRTSRVD 284 (929)
Q Consensus 228 ~~~~hr~iLaa~S~~F~~mf~~~~~e~~~---------~~i~~~~~~~~~~~~~-~~l~~~Yt~~~~ 284 (929)
++.||++|.|+||++||.++....+|... ..|-++ .-|=|.+|. .+++||||++++
T Consensus 262 eikahkai~aaRS~ffRnLL~RkiregeE~sdrtlr~PkRIifd-E~I~PkafA~i~lhclYTD~lD 327 (401)
T KOG2838|consen 262 EIKAHKAIAAARSKFFRNLLLRKIREGEEGSDRTLRRPKRIIFD-ELIFPKAFAPIFLHCLYTDRLD 327 (401)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHhhcccccccccccCCceeech-hhhcchhhhhhhhhhheecccc
Confidence 68999999999999999999766555432 266664 345566654 578999999998
No 205
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.12 E-value=4.9e-05 Score=69.27 Aligned_cols=100 Identities=19% Similarity=0.113 Sum_probs=78.1
Q ss_pred HhHHHHHHHHHHHhccHHHHHHHHHHHHhhcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHH
Q 002379 548 VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLA 627 (929)
Q Consensus 548 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~ 627 (929)
|...+.+|+++-.+|+.++|+..|++++.......
T Consensus 1 ~~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~--------------------------------------------- 35 (120)
T PF12688_consen 1 PRALYELAWAHDSLGREEEAIPLYRRALAAGLSGA--------------------------------------------- 35 (120)
T ss_pred CchHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCch---------------------------------------------
Confidence 34567788888889999999999998887654433
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc---hHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002379 628 VINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSS---EHERLVYEGWILYDTGHREEALSRAEKSIS 702 (929)
Q Consensus 628 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~---~~~~~~~lg~~~~~~g~~~eA~~~~~~al~ 702 (929)
....++..+|..+..+|++++|+..+++++...|+ +......++.++...|++++|+..+-.++.
T Consensus 36 ----------~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 36 ----------DRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred ----------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 11235667888888888888888888888888777 677777788888888888888888877664
No 206
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.12 E-value=9.4e-06 Score=66.43 Aligned_cols=63 Identities=19% Similarity=0.130 Sum_probs=56.5
Q ss_pred HHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch-HHHHH
Q 002379 650 LLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFL 712 (929)
Q Consensus 650 ~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~~~~~ 712 (929)
+...|++++|+..|++++..+|++..++..+|.+|...|++++|...+++++..+|++ ..+..
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l 64 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQL 64 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 3568999999999999999999999999999999999999999999999999999997 44433
No 207
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.12 E-value=3.6e-05 Score=85.08 Aligned_cols=72 Identities=25% Similarity=0.135 Sum_probs=63.6
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002379 630 NQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSI 701 (929)
Q Consensus 630 ~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al 701 (929)
++++..+|.+..++...+..+...++++.|+...+++++..|++...|..|+.+|...|++++|+..++.+-
T Consensus 224 ~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 224 NEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 666666677777888889999999999999999999999999999999999999999999999998877543
No 208
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.11 E-value=0.00029 Score=71.43 Aligned_cols=165 Identities=17% Similarity=0.156 Sum_probs=132.8
Q ss_pred hhHHHHHHHHHHHHcCCHHHHHHHHHHHHcCC-----CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHH---HHH
Q 002379 747 KGQALNNLGSIYVECGKLDQAENCYINALDIK-----HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSAS---AFE 818 (929)
Q Consensus 747 ~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~-----~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~ 818 (929)
|...+++-|...+..|++++|+..|+...... ...+...++.++.+.+++++|+...++.+...|.++. +++
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 45779999999999999999999999988762 2368999999999999999999999999999998765 455
Q ss_pred HHhh------------hCCHHHHHHHHHHHHhcCCCCcHH-----------------HHHHHHHHHhcCCHHHHHHHHHH
Q 002379 819 KRSE------------YSDREMAKNDLNMATQLDPLRTYP-----------------YRYRAAVLMDDQKEVEAVEELSK 869 (929)
Q Consensus 819 ~lg~------------~g~~~~A~~~~~~al~l~p~~~~~-----------------~~~la~~~~~~g~~~eA~~~l~k 869 (929)
.+|. ..-..+|+..|+..++..|+...+ -...|..|.+.|.+..|+.-++.
T Consensus 113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~ 192 (254)
T COG4105 113 LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEE 192 (254)
T ss_pred HHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 5551 112367889999999999965432 23568889999999999999999
Q ss_pred HHhcCCCch----HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCH
Q 002379 870 AIAFKPDLQ----MLHLRAAFYESIGDLTSAIRDSQAALCLDPNHM 911 (929)
Q Consensus 870 al~~~p~~~----~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~ 911 (929)
+++..|+.. .+..+..+|..+|-.++|...-.-.-.-.|+++
T Consensus 193 v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~ 238 (254)
T COG4105 193 VLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDSQ 238 (254)
T ss_pred HHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCc
Confidence 999887663 444779999999999999876555444556664
No 209
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.08 E-value=0.0069 Score=64.29 Aligned_cols=186 Identities=13% Similarity=0.013 Sum_probs=126.8
Q ss_pred HHHHHHHHHHhcCCCC--hHHHHHHHHHHHHhCCHHHHHHHHHHHhcccCCHhHHHHHHHHH--HHhccHHHHHHHHHHH
Q 002379 499 EKIVDLNYASELDPTL--SFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLF--IAADDYESALRDTLAL 574 (929)
Q Consensus 499 ~Ai~~~~kal~l~P~~--~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~--~~~g~~~~A~~~~~~a 574 (929)
.|.+.-.++-.+-..+ +..+..-+..-.-.|+++.|.+-|+.++.. |....+-++|.+. ...|+.+.|+.+-+.+
T Consensus 102 lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d-PEtRllGLRgLyleAqr~GareaAr~yAe~A 180 (531)
T COG3898 102 LARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD-PETRLLGLRGLYLEAQRLGAREAARHYAERA 180 (531)
T ss_pred HHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC-hHHHHHhHHHHHHHHHhcccHHHHHHHHHHH
Confidence 5555555555443333 344555577788899999999999999732 2222344555544 4579999999999999
Q ss_pred HhhcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCC-----ChHHHHHHHHH
Q 002379 575 LALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPG-----KSFLRFRQSLL 649 (929)
Q Consensus 575 l~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~~p~-----~~~~~~~lg~~ 649 (929)
-...|.-++. ....-......|+|+.|+.+++... ....+.++ .+.++...+..
T Consensus 181 a~~Ap~l~WA------~~AtLe~r~~~gdWd~AlkLvd~~~---------------~~~vie~~~aeR~rAvLLtAkA~s 239 (531)
T COG3898 181 AEKAPQLPWA------ARATLEARCAAGDWDGALKLVDAQR---------------AAKVIEKDVAERSRAVLLTAKAMS 239 (531)
T ss_pred HhhccCCchH------HHHHHHHHHhcCChHHHHHHHHHHH---------------HHHhhchhhHHHHHHHHHHHHHHH
Confidence 9999988832 2223334467799999977762211 11111221 12222233333
Q ss_pred HHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch
Q 002379 650 LLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF 707 (929)
Q Consensus 650 ~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~ 707 (929)
... -+...|...-.++.++.|+...+-..-+..+++.|+..++-..++.+.+..|..
T Consensus 240 ~ld-adp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP 296 (531)
T COG3898 240 LLD-ADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHP 296 (531)
T ss_pred Hhc-CChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCCh
Confidence 322 457888999999999999998888889999999999999999999999988865
No 210
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.07 E-value=6.1e-05 Score=83.26 Aligned_cols=116 Identities=18% Similarity=0.116 Sum_probs=100.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHh----hhCCHHHH
Q 002379 754 LGSIYVECGKLDQAENCYINALDIKHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS----EYSDREMA 829 (929)
Q Consensus 754 lg~~~~~~g~~~eA~~~~~~al~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg----~~g~~~~A 829 (929)
+-..+...++++.|++.+++..+.+ +++...+++++...++..+|++.+.+++...|.+...+...+ ..++++.|
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~-pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lA 253 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERD-PEVAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELA 253 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcC-CcHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHH
Confidence 3445556789999999999977765 567778999999999999999999999999999988877776 56888999
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 002379 830 KNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKA 870 (929)
Q Consensus 830 ~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~ka 870 (929)
+...++++.+.|.+...|..||.+|...|+++.|+..++.+
T Consensus 254 L~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 254 LEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 99999999999999999999999999999999999877644
No 211
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.06 E-value=1.7e-05 Score=66.01 Aligned_cols=61 Identities=20% Similarity=0.252 Sum_probs=58.9
Q ss_pred HHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch
Q 002379 647 SLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF 707 (929)
Q Consensus 647 g~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~ 707 (929)
..+|...+++++|+..+++++..+|+++..+..+|.++...|++++|+..++++++..|+.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~ 62 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDD 62 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCc
Confidence 5678999999999999999999999999999999999999999999999999999999988
No 212
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.05 E-value=3.7e-05 Score=68.39 Aligned_cols=89 Identities=28% Similarity=0.315 Sum_probs=73.4
Q ss_pred hhCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCch-----HHHHHHHHHHHcCCHHHH
Q 002379 822 EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQ-----MLHLRAAFYESIGDLTSA 896 (929)
Q Consensus 822 ~~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~-----~~~~la~~~~~~g~~~~A 896 (929)
+.|+.+.|++.|.+++.+-|..+.+|++++..+.-+|+.++|++.+++++++..+.. .+..+|.+|..+|+.+.|
T Consensus 55 E~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd~A 134 (175)
T KOG4555|consen 55 EAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDDAA 134 (175)
T ss_pred hccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchHHH
Confidence 567777788888888888888888888899999999999999999999999865442 233679999999999999
Q ss_pred HHHHHHHhccCCCC
Q 002379 897 IRDSQAALCLDPNH 910 (929)
Q Consensus 897 ~~~~~~al~l~P~~ 910 (929)
...|+.|-++....
T Consensus 135 R~DFe~AA~LGS~F 148 (175)
T KOG4555|consen 135 RADFEAAAQLGSKF 148 (175)
T ss_pred HHhHHHHHHhCCHH
Confidence 99999988876654
No 213
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.04 E-value=0.03 Score=61.26 Aligned_cols=166 Identities=13% Similarity=0.093 Sum_probs=105.4
Q ss_pred CCChHHHHHHHHHHhhchhccCch-------hHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCC-H----HHHHHHHHHHH
Q 002379 724 PESSTYVIQLLEEALRCPSDGLRK-------GQALNNLGSIYVECGKLDQAENCYINALDIKH-T----RAHQGLARVYY 791 (929)
Q Consensus 724 ~~~~~~a~~~~e~Al~~~~~al~~-------~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~-~----~a~~~la~~~~ 791 (929)
.++...++....++.+.+.+...| +.....+|.....-+.++.|...|..|.+..+ . -...++|.+|.
T Consensus 336 ~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL 415 (629)
T KOG2300|consen 336 RGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYL 415 (629)
T ss_pred hCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHH
Confidence 334444444444555544444332 35667778777788888888888888888732 2 24467788888
Q ss_pred HhCCHHHHHHHHHHHHHHccCCHHHHHHHhhhCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002379 792 LKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAI 871 (929)
Q Consensus 792 ~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal 871 (929)
..|+-+.-.+.++ .+.|.+...+... . ....+++..|...+.++++.||...+.+.+
T Consensus 416 ~~~~~ed~y~~ld---~i~p~nt~s~ssq---------------~-----l~a~~~~v~glfaf~qn~lnEaK~~l~e~L 472 (629)
T KOG2300|consen 416 RIGDAEDLYKALD---LIGPLNTNSLSSQ---------------R-----LEASILYVYGLFAFKQNDLNEAKRFLRETL 472 (629)
T ss_pred HhccHHHHHHHHH---hcCCCCCCcchHH---------------H-----HHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 8776554443333 2334332111100 0 013456677888889999999999999999
Q ss_pred hcCCCch-------HHHHHHHHHHHcCCHHHHHHHHHHHhccC---CCCHH
Q 002379 872 AFKPDLQ-------MLHLRAAFYESIGDLTSAIRDSQAALCLD---PNHME 912 (929)
Q Consensus 872 ~~~p~~~-------~~~~la~~~~~~g~~~~A~~~~~~al~l~---P~~~~ 912 (929)
+...... .+.+++.+....||..++.+..+-++++. |+.+-
T Consensus 473 kmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~v 523 (629)
T KOG2300|consen 473 KMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPV 523 (629)
T ss_pred hhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCchH
Confidence 8763211 12256888899999999999998888764 45443
No 214
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.03 E-value=0.0088 Score=70.03 Aligned_cols=228 Identities=14% Similarity=0.021 Sum_probs=141.1
Q ss_pred HHhccHHHHHHHHHHHHhhcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCC
Q 002379 559 IAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPG 638 (929)
Q Consensus 559 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~~p~ 638 (929)
...+++..|+....+.++..|+.. .+..+-+....+.|..++|...+ +..-...++
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn~~------~a~vLkaLsl~r~gk~~ea~~~L------------------e~~~~~~~~ 75 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPNAL------YAKVLKALSLFRLGKGDEALKLL------------------EALYGLKGT 75 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCcH------HHHHHHHHHHHHhcCchhHHHHH------------------hhhccCCCC
Confidence 445677788888888888888777 56666777777777777775444 333333455
Q ss_pred ChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch-HHHHHHHHHH
Q 002379 639 KSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYIL 717 (929)
Q Consensus 639 ~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~~~~~l~~~l 717 (929)
+-..+-.+-.+|..+|++++|...|+++...+|+ .+....+=.+|.+.+.|.+-.+.--+..+..|+. -.++.....+
T Consensus 76 D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Sli 154 (932)
T KOG2053|consen 76 DDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLI 154 (932)
T ss_pred chHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHH
Confidence 6666777778888888888888888888888888 7777777777777777766555555555566766 2222222222
Q ss_pred HhcCCCCCChHHHHHHHHHHhhchhccCch-------hHHHHHHHHHHHHcCCHHHHHHHHHHHHcC----CCHHHHHHH
Q 002379 718 ADTNLDPESSTYVIQLLEEALRCPSDGLRK-------GQALNNLGSIYVECGKLDQAENCYINALDI----KHTRAHQGL 786 (929)
Q Consensus 718 ~~~~~~~~~~~~a~~~~e~Al~~~~~al~~-------~~a~~~lg~~~~~~g~~~eA~~~~~~al~~----~~~~a~~~l 786 (929)
......+......+ ...-|....++.+.. .+.. ..-.++...|++++|.+.+..-+.- .+.......
T Consensus 155 lqs~~~~~~~~~~i-~l~LA~~m~~~~l~~~gk~~s~aE~~-Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~ 232 (932)
T KOG2053|consen 155 LQSIFSENELLDPI-LLALAEKMVQKLLEKKGKIESEAEII-LYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKK 232 (932)
T ss_pred HHhccCCcccccch-hHHHHHHHHHHHhccCCccchHHHHH-HHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHH
Confidence 22211111111100 111111111111111 1222 2234566789999999998544333 233344456
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHccCC
Q 002379 787 ARVYYLKNELKAAYDEMTKLLEKAQYS 813 (929)
Q Consensus 787 a~~~~~~g~~~~A~~~~~~al~~~p~~ 813 (929)
...+...+++.+-.+...+++...+++
T Consensus 233 ~dllk~l~~w~~l~~l~~~Ll~k~~Dd 259 (932)
T KOG2053|consen 233 LDLLKLLNRWQELFELSSRLLEKGNDD 259 (932)
T ss_pred HHHHHHhcChHHHHHHHHHHHHhCCcc
Confidence 677788899999999999999999887
No 215
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.03 E-value=0.00013 Score=67.64 Aligned_cols=84 Identities=13% Similarity=0.074 Sum_probs=68.9
Q ss_pred ChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccC----CHhHHHHHHHHHHHhccHHHHHHHHHHHHhhcCCchhhhcccc
Q 002379 514 LSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL----SVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVS 589 (929)
Q Consensus 514 ~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~----~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 589 (929)
.+..++..|...++.|+|++|++.|+.+....| .+.+...++.+|+..+++++|+..+++.++++|+++..- -
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vd---Y 85 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVD---Y 85 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCcc---H
Confidence 356788889999999999999999999988777 566788999999999999999999999999999998321 2
Q ss_pred HHHHHHHHHHh
Q 002379 590 GDHLVKLLNHH 600 (929)
Q Consensus 590 a~~ll~~~~~~ 600 (929)
+++..|+.+..
T Consensus 86 a~Y~~gL~~~~ 96 (142)
T PF13512_consen 86 AYYMRGLSYYE 96 (142)
T ss_pred HHHHHHHHHHH
Confidence 44455555443
No 216
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.00 E-value=2.1e-05 Score=86.13 Aligned_cols=69 Identities=12% Similarity=-0.017 Sum_probs=66.4
Q ss_pred cCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHH---HHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 002379 635 NDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHER---LVYEGWILYDTGHREEALSRAEKSISI 703 (929)
Q Consensus 635 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~---~~~lg~~~~~~g~~~eA~~~~~~al~~ 703 (929)
.+|+++.+++++|.+|..+|+|++|+..|+++++++|++.++ |+++|.+|..+|++++|+..+++++++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 579999999999999999999999999999999999999865 999999999999999999999999997
No 217
>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism]
Probab=98.00 E-value=3.4e-05 Score=77.29 Aligned_cols=97 Identities=21% Similarity=0.255 Sum_probs=84.7
Q ss_pred EEEEEcCeEEEeehhHHhccCHHHHHHhcCCCC-c-CCCCeeEecCCCCCHHHHHHHhhhHccCCCCC-CChhHHHHHHH
Q 002379 220 VTFCVRDKEISFVRNKIASLSSPFKAMLYGGFV-E-SKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDL-FCPGIVLELLS 296 (929)
Q Consensus 220 v~~~v~~~~~~~hr~iLaa~S~~F~~mf~~~~~-e-~~~~~i~~~~~~~~~~~~~~~l~~~Yt~~~~~-~~~~~~~~ll~ 296 (929)
|.+-|||..|..++.-|.--..+|++||.+++. + ...+.|-| |=||.-|..+|+||.-|.+.. -+...+.||+.
T Consensus 7 vkLnvGG~~F~Tsk~TLtk~dg~fk~m~e~~i~~~~d~s~~IFI---DRSpKHF~~ILNfmRdGdv~LPe~~kel~El~~ 83 (230)
T KOG2716|consen 7 VKLNVGGTIFKTSKSTLTKFDGFFKTMLETDIPVEKDESGCIFI---DRSPKHFDTILNFMRDGDVDLPESEKELKELLR 83 (230)
T ss_pred EEEecCCeEEEeehhhhhhhhhHHHHHhhcCCccccCCcCcEEe---cCChhHHHHHHHhhhcccccCccchHHHHHHHH
Confidence 889999999999999999999999999999874 3 33467888 679999999999999877771 45567889999
Q ss_pred HhchhChHhHHHHHHHHHHhhcC
Q 002379 297 FANRFCCEEMKSACDAHLASLVG 319 (929)
Q Consensus 297 ~A~~~~~~~l~~~C~~~l~~~~~ 319 (929)
=|..|.++.|.+.|...+.....
T Consensus 84 EA~fYlL~~Lv~~C~~~i~~~~~ 106 (230)
T KOG2716|consen 84 EAEFYLLDGLVELCQSAIARLIR 106 (230)
T ss_pred HHHHhhHHHHHHHHHHHhhhccc
Confidence 99999999999999999988765
No 218
>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=98.00 E-value=4.5e-06 Score=90.80 Aligned_cols=130 Identities=15% Similarity=0.032 Sum_probs=113.5
Q ss_pred CeEEEeehhHHhccCHHHHHHhcCCCCcCCCCeeEecCCCCCHHHHHHHhhhHccCCCCCCChhHHH---HHHHHhchhC
Q 002379 226 DKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFCPGIVL---ELLSFANRFC 302 (929)
Q Consensus 226 ~~~~~~hr~iLaa~S~~F~~mf~~~~~e~~~~~i~~~~~~~~~~~~~~~l~~~Yt~~~~~~~~~~~~---~ll~~A~~~~ 302 (929)
+..+.+|+.+++++|++|++|+.....+.....+++ .+.++..++++..|.|+..-. ...+.+. .++..++++.
T Consensus 109 ~g~~~~~~~~~~a~~~V~~~~~~~d~~~~~~~~~~~--~d~~~~~~~~~~~F~~~~s~~-~~~~~~~~~~~~~a~~f~~~ 185 (297)
T KOG1987|consen 109 NGFLVAHKLVLVARSEVFEAMGKSDVFKESSKLITL--LEEKPEVLEALNGFQVLPSQV-SSVERIFEKHPDLAAAFKYK 185 (297)
T ss_pred CcEEEcCceEEEeeecceeeecccccchhccccccc--cccchhhHhhhceEEEeccch-HHHHHhhcCChhhhhccccc
Confidence 455999999999999999999999888877788888 899999999999999996655 4444454 8889999999
Q ss_pred hHhHHHHHHHHHHhhcCChhhHHHHHHHHHHhChHHHHHHHHHHHHh--chhhhcCccc
Q 002379 303 CEEMKSACDAHLASLVGDIEDALILIDYGLEERATLLVASCLQVLLR--ELPSSLYNPK 359 (929)
Q Consensus 303 ~~~l~~~C~~~l~~~~~~~~n~~~~~~~a~~~~~~~L~~~c~~~i~~--~~~~v~~~~~ 359 (929)
...|+..|...+.+.+. ..++..++..+..++...+...|..++.. ++..+.....
T Consensus 186 ~~~lk~~~~~~l~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ld~l~~~~~ 243 (297)
T KOG1987|consen 186 NRHLKLACMPVLLSLIE-TLNVSQSLQEASNYDLKEAKSALTYVIAAGFKLDWLEKKLN 243 (297)
T ss_pred cHHHHHHHHHHHHHHHH-hhhhcccHHHhchhHHHHHHHHHHHHHhccchHhHHHHHHH
Confidence 99999999999999999 99999999999999999999999999987 6655554333
No 219
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=97.97 E-value=0.023 Score=68.13 Aligned_cols=441 Identities=19% Similarity=0.158 Sum_probs=230.5
Q ss_pred HHHHHHHHh-hcchHHHHHHHHHHHhhHHHH-hcccHHHHHHHHHHHHhcCccccHH--------HHHHHHHHhchHHHH
Q 002379 401 TVMLLERLG-ECSTERWQRMLALHQLGCVMF-EREEYKDACYYFEAAADAGHIYSLA--------GLARAKYKVGQQYSA 470 (929)
Q Consensus 401 ~~~~Le~l~-~~~~~~~~~a~~~~~lG~~~~-~~g~y~~A~~~f~~al~~~~~~~~a--------~la~~~~~~g~a~~a 470 (929)
++.-|+-+. .+...+.+.+.+++++|.+++ +..+++.|..++++++.+....... -+++++.+.+..
T Consensus 40 ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~--- 116 (608)
T PF10345_consen 40 AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPK--- 116 (608)
T ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHH---
Confidence 344455555 556667788999999999998 7899999999999998885433221 223333333332
Q ss_pred HHHHHhhhccCCCchhhhHHHHHHhhhhHHHHHHHHHHhcCCC---ChHHHH---HHHHHHHHhCCHHHHHHHHHHHhcc
Q 002379 471 YKLINSIISEHKPTGWMYQERSLYNLGREKIVDLNYASELDPT---LSFPYK---YRAVAKMEEGQIRAAISEIDRIIVF 544 (929)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Ai~~~~kal~l~P~---~~~a~~---~~a~~~~~~g~~~~A~~~~~~al~~ 544 (929)
.|...++++++.-.+ ....|. .+.......+++..|+..++.+...
T Consensus 117 ----------------------------~a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~ 168 (608)
T PF10345_consen 117 ----------------------------AALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQL 168 (608)
T ss_pred ----------------------------HHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 233333333333221 222221 1122222337888888888887765
Q ss_pred cC---CHhH----HHHHHHHHHHhccHHHHHHHHHHHHhhcCCc---h-hhhccccHHHHHHHHH--HhhcccchHHHHH
Q 002379 545 KL---SVDC----LELRAWLFIAADDYESALRDTLALLALESNY---M-MFHGRVSGDHLVKLLN--HHVRSWSPADCWI 611 (929)
Q Consensus 545 ~~---~~~~----~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~-~~~~~~~a~~ll~~~~--~~~~~~~~A~~~l 611 (929)
.. ++.. ....+.+....+..+++++..+++....... + .....+.++.++-.+. ...|++..+...+
T Consensus 169 a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L 248 (608)
T PF10345_consen 169 ANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKL 248 (608)
T ss_pred hhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 52 2322 3334555566677777777777764322111 0 0111113333333322 3344444554443
Q ss_pred Hh-------h--h-ccccccccccHHHHH--H---------HHhcCCC---ChHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 002379 612 KL-------Y--D-RWSSVDDIGSLAVIN--Q---------MLINDPG---KSFLRFRQSLLLLRLNCQKAAMRCLRLAR 667 (929)
Q Consensus 612 ~l-------~--~-~~~~~~~~~~l~~~~--~---------al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~l~~al 667 (929)
+. . . .|...++.+.+..-. . .+.--|. ..-.|+.-|......+..++|.+++++++
T Consensus 249 ~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l 328 (608)
T PF10345_consen 249 KQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKAL 328 (608)
T ss_pred HHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHH
Confidence 32 1 1 133322222211000 0 0000000 12234455666667777778888888776
Q ss_pred hcCCch--------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch-HHHHHHHHHHHhc
Q 002379 668 NHSSSE--------------------------HERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADT 720 (929)
Q Consensus 668 ~~~p~~--------------------------~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~~~~~l~~~l~~~ 720 (929)
+.-.+. ....++.++...-.+++..|....+.+....... ...+
T Consensus 329 ~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~--------- 399 (608)
T PF10345_consen 329 KQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLY--------- 399 (608)
T ss_pred HHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchh---------
Confidence 431110 1123455777777888888888777766543221 0000
Q ss_pred CCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHH--------HHHcCC-CH----HHHHHHH
Q 002379 721 NLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYI--------NALDIK-HT----RAHQGLA 787 (929)
Q Consensus 721 ~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~--------~al~~~-~~----~a~~~la 787 (929)
+ .-.+..++..|..+...|+.+.|...|. .+...+ .. -+..++.
T Consensus 400 ---------------~--------~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~ 456 (608)
T PF10345_consen 400 ---------------E--------SLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLA 456 (608)
T ss_pred ---------------h--------hhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHH
Confidence 0 0013557788888889999999999998 333332 22 2455666
Q ss_pred HHHHHhCCHHHHHHHHHHHHH-Hcc---CCHHHHHHHh-----------hhCCHHHHHHHHHHHHhcC-C------CCcH
Q 002379 788 RVYYLKNELKAAYDEMTKLLE-KAQ---YSASAFEKRS-----------EYSDREMAKNDLNMATQLD-P------LRTY 845 (929)
Q Consensus 788 ~~~~~~g~~~~A~~~~~~al~-~~p---~~~~~~~~lg-----------~~g~~~~A~~~~~~al~l~-p------~~~~ 845 (929)
.++...+........+..+++ +.| +....+...+ ..-...++...+..+++.. . ....
T Consensus 457 ~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~l~~~ 536 (608)
T PF10345_consen 457 IILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQLLAI 536 (608)
T ss_pred HHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccchHHHH
Confidence 666665553332212333332 222 1111111111 1122236666666655544 1 2233
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCC---Cc--hHHH-----HHHHHHHHcCCHHHHHHHHHHHhc
Q 002379 846 PYRYRAAVLMDDQKEVEAVEELSKAIAFKP---DL--QMLH-----LRAAFYESIGDLTSAIRDSQAALC 905 (929)
Q Consensus 846 ~~~~la~~~~~~g~~~eA~~~l~kal~~~p---~~--~~~~-----~la~~~~~~g~~~~A~~~~~~al~ 905 (929)
++..++..++ .|+..+......++..... +. ..|. .++..+...|+.++|....++.-.
T Consensus 537 ~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 537 LLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred HHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 5666777777 7888777766666665433 22 2342 346778889999999988877643
No 220
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.97 E-value=2.2e-05 Score=85.94 Aligned_cols=68 Identities=13% Similarity=0.033 Sum_probs=59.6
Q ss_pred cCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchH----HHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 002379 839 LDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQM----LHLRAAFYESIGDLTSAIRDSQAALCL 906 (929)
Q Consensus 839 l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~----~~~la~~~~~~g~~~~A~~~~~~al~l 906 (929)
.+|+++.+++++|.+|...|+|++|+..|+++++++|++.. ++++|.+|..+|++++|++.+++|+++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 46788889999999999999999999999999999998863 568899999999999999999999987
No 221
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.95 E-value=0.00082 Score=63.99 Aligned_cols=62 Identities=13% Similarity=0.007 Sum_probs=48.0
Q ss_pred ChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002379 639 KSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSI 701 (929)
Q Consensus 639 ~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al 701 (929)
.+......|..+..+|++.+|...|+.++...|+ +.+....+..+..+|+.++|...+....
T Consensus 159 ~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 159 SPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred CCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 3455667788888888888888888888888887 6777778888888888887776665544
No 222
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.92 E-value=0.00014 Score=74.42 Aligned_cols=105 Identities=16% Similarity=0.106 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHcC-----CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHhhhC
Q 002379 750 ALNNLGSIYVECGKLDQAENCYINALDI-----KHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYS 824 (929)
Q Consensus 750 a~~~lg~~~~~~g~~~eA~~~~~~al~~-----~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~g 824 (929)
-.++.+.-++..|+|.+|...|..-++. -.+++++.||.+++.+|++++|...|..+++..|++
T Consensus 143 ~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s----------- 211 (262)
T COG1729 143 KLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKS----------- 211 (262)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCC-----------
Confidence 3788889999999999999999999988 245799999999999999999999999999988876
Q ss_pred CHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHH
Q 002379 825 DREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLH 881 (929)
Q Consensus 825 ~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~ 881 (929)
|.-+++++.+|.+..++|+.++|...|+++++..|+.+...
T Consensus 212 ----------------~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~ 252 (262)
T COG1729 212 ----------------PKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAK 252 (262)
T ss_pred ----------------CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHH
Confidence 55688899999999999999999999999999999887554
No 223
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.87 E-value=0.00035 Score=62.31 Aligned_cols=106 Identities=18% Similarity=0.115 Sum_probs=88.1
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHHHHHhcCC
Q 002379 643 RFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNL 722 (929)
Q Consensus 643 ~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~l~~~l~~~~~ 722 (929)
+-..|..+...|+.+.|++.|.+++.+.|..+.+|++.+..+.-+|+.++|+..+++++++..+..
T Consensus 46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~t-------------- 111 (175)
T KOG4555|consen 46 LELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQT-------------- 111 (175)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccc--------------
Confidence 445677888899999999999999999999999999999999999999999999999998754330
Q ss_pred CCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCHHHHH
Q 002379 723 DPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIKHTRAHQ 784 (929)
Q Consensus 723 ~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~~~a~~ 784 (929)
...-.++...|.+|...|+-+.|...|+.+-+++.+-+..
T Consensus 112 ----------------------rtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS~FAr~ 151 (175)
T KOG4555|consen 112 ----------------------RTACQAFVQRGLLYRLLGNDDAARADFEAAAQLGSKFARE 151 (175)
T ss_pred ----------------------hHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhCCHHHHH
Confidence 0013568889999999999999999999998886654433
No 224
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.86 E-value=5.1e-05 Score=64.01 Aligned_cols=73 Identities=29% Similarity=0.403 Sum_probs=56.8
Q ss_pred CchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch-HHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCchhH
Q 002379 671 SSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQ 749 (929)
Q Consensus 671 p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~~~~~l~~~l~~~~~~~~~~~~a~~~~e~Al~~~~~al~~~~ 749 (929)
|+...++.++|.+|...|++++|+..|++++++.... +.... ...
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~----------------------------------~a~ 47 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPD----------------------------------TAN 47 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHH----------------------------------HHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHH----------------------------------HHH
Confidence 4557789999999999999999999999999863211 10000 135
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHcC
Q 002379 750 ALNNLGSIYVECGKLDQAENCYINALDI 777 (929)
Q Consensus 750 a~~~lg~~~~~~g~~~eA~~~~~~al~~ 777 (929)
++.++|.++...|++++|++++++++++
T Consensus 48 ~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 48 TLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5899999999999999999999999864
No 225
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.83 E-value=0.002 Score=64.10 Aligned_cols=197 Identities=15% Similarity=0.101 Sum_probs=109.3
Q ss_pred HHHHHHhccHHHHHHHHHHHHhhcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHh
Q 002379 555 AWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLI 634 (929)
Q Consensus 555 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~ 634 (929)
+.+|...++|++|...+.++.+-..++..++....++...+.+......|.++..++ +++..
T Consensus 38 AvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~------------------eKAs~ 99 (308)
T KOG1585|consen 38 AVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLY------------------EKASE 99 (308)
T ss_pred HHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHH------------------HHHHH
Confidence 455556666666666666666655555544443345555555555555555554444 33332
Q ss_pred c-----CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCch------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 002379 635 N-----DPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE------HERLVYEGWILYDTGHREEALSRAEKSISI 703 (929)
Q Consensus 635 ~-----~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~------~~~~~~lg~~~~~~g~~~eA~~~~~~al~~ 703 (929)
. .|+.+..-...+--....-++++|++.|++++.+-..+ .+.+...+.++.+..++++|...+.+-..+
T Consensus 100 lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~ 179 (308)
T KOG1585|consen 100 LYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVA 179 (308)
T ss_pred HHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhH
Confidence 2 23333333333444445566777777777776543221 334445566777777777777666554432
Q ss_pred ccchHHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC------
Q 002379 704 ERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI------ 777 (929)
Q Consensus 704 ~p~~~~~~~l~~~l~~~~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~------ 777 (929)
.-...++ -.+...+.....+|+...+|..|..+|+..-++
T Consensus 180 ~~~~~~y----------------------------------~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~s 225 (308)
T KOG1585|consen 180 ADKCDAY----------------------------------NSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKS 225 (308)
T ss_pred HHHHhhc----------------------------------ccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccCh
Confidence 2111000 011233555556667778999999999988777
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHH
Q 002379 778 KHTRAHQGLARVYYLKNELKAAYDEMT 804 (929)
Q Consensus 778 ~~~~a~~~la~~~~~~g~~~~A~~~~~ 804 (929)
....+..+|-.. +..|+.++..+.+.
T Consensus 226 ed~r~lenLL~a-yd~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 226 EDSRSLENLLTA-YDEGDIEEIKKVLS 251 (308)
T ss_pred HHHHHHHHHHHH-hccCCHHHHHHHHc
Confidence 123456666555 35677776666554
No 226
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.80 E-value=3.2e-05 Score=65.23 Aligned_cols=67 Identities=19% Similarity=0.123 Sum_probs=56.9
Q ss_pred CChHHHHHHHHHHHHhcCHHHHHHHHHHHHhc----CCc---hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 002379 638 GKSFLRFRQSLLLLRLNCQKAAMRCLRLARNH----SSS---EHERLVYEGWILYDTGHREEALSRAEKSISIE 704 (929)
Q Consensus 638 ~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~----~p~---~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~ 704 (929)
+-+.++..+|.+|..+|++++|+..|++++++ .++ ...++.++|.++...|++++|++++++++++.
T Consensus 3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 34568899999999999999999999999865 222 25678999999999999999999999999864
No 227
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=97.77 E-value=3.6e-05 Score=67.58 Aligned_cols=88 Identities=17% Similarity=0.144 Sum_probs=69.7
Q ss_pred EEEEEcCeEEEeehhHHh-ccCHHHHHHhcCC---CCcCCCCeeEecCCCCCHHHHHHHhhhHcc-CCCCCCChhHHHHH
Q 002379 220 VTFCVRDKEISFVRNKIA-SLSSPFKAMLYGG---FVESKRKTIDFSHDGVSVEGLRAVEVYTRT-SRVDLFCPGIVLEL 294 (929)
Q Consensus 220 v~~~v~~~~~~~hr~iLa-a~S~~F~~mf~~~---~~e~~~~~i~~~~~~~~~~~~~~~l~~~Yt-~~~~~~~~~~~~~l 294 (929)
|+|-|||+.|.+-+..|. ....+|..||.+. ......+.+-| |-+|..|+.||+|+.+ +.++..+...+..+
T Consensus 1 V~lNVGG~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fi---DRdp~~F~~IL~ylr~~~~l~~~~~~~~~~l 77 (94)
T PF02214_consen 1 VRLNVGGTIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFI---DRDPELFEYILNYLRTGGKLPIPDEICLEEL 77 (94)
T ss_dssp EEEEETTEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEE---SS-HHHHHHHHHHHHHTSSB---TTS-HHHH
T ss_pred CEEEECCEEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEe---ccChhhhhHHHHHHhhcCccCCCCchhHHHH
Confidence 789999999999999998 5567999999875 44555678877 5699999999999999 67773346678899
Q ss_pred HHHhchhChHhH-HHHH
Q 002379 295 LSFANRFCCEEM-KSAC 310 (929)
Q Consensus 295 l~~A~~~~~~~l-~~~C 310 (929)
+.-|+.|+++.| ++.|
T Consensus 78 ~~Ea~fy~l~~l~i~~c 94 (94)
T PF02214_consen 78 LEEAEFYGLDELFIEDC 94 (94)
T ss_dssp HHHHHHHT-HHHHBHHC
T ss_pred HHHHHHcCCCccccCCC
Confidence 999999999999 7766
No 228
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.76 E-value=0.00092 Score=66.02 Aligned_cols=162 Identities=15% Similarity=0.095 Sum_probs=109.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHcC----C----CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHH------HH
Q 002379 753 NLGSIYVECGKLDQAENCYINALDI----K----HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASA------FE 818 (929)
Q Consensus 753 ~lg~~~~~~g~~~eA~~~~~~al~~----~----~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~------~~ 818 (929)
.-|+.|...++|+.|-..|.++-.. + -...+...+.+| +.+++++|...+++++++..+-... +.
T Consensus 39 ~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cy-kk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~ 117 (288)
T KOG1586|consen 39 RAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCY-KKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHI 117 (288)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHh-hccChHHHHHHHHHHHHHHHhhhHHHHHHhhhh
Confidence 3344555555555555555555443 1 112344445554 4558888888888888887665432 22
Q ss_pred HHh-----hhCCHHHHHHHHHHHHhcCCC------CcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHH-------
Q 002379 819 KRS-----EYSDREMAKNDLNMATQLDPL------RTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQML------- 880 (929)
Q Consensus 819 ~lg-----~~g~~~~A~~~~~~al~l~p~------~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~------- 880 (929)
.+| .+.++++|+.+|+++-+.... .-..+...|..-...++|.+|+..|++.....-++..+
T Consensus 118 ~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~Kdy 197 (288)
T KOG1586|consen 118 EIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDY 197 (288)
T ss_pred hHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHH
Confidence 334 457889999999998765432 22345566667778899999999999998766655422
Q ss_pred HH-HHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHH
Q 002379 881 HL-RAAFYESIGDLTSAIRDSQAALCLDPNHMETLD 915 (929)
Q Consensus 881 ~~-la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~ 915 (929)
++ -|.|+....|.-.+...+++..+++|...+..+
T Consensus 198 flkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsRE 233 (288)
T KOG1586|consen 198 FLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSRE 233 (288)
T ss_pred HHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccHH
Confidence 23 388888889999999999999999999876543
No 229
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.69 E-value=0.014 Score=58.77 Aligned_cols=219 Identities=15% Similarity=0.141 Sum_probs=134.2
Q ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCch------------------HH-HHHHHHHHHHHcCCHHHHHHHHHHH
Q 002379 640 SFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE------------------HE-RLVYEGWILYDTGHREEALSRAEKS 700 (929)
Q Consensus 640 ~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~------------------~~-~~~~lg~~~~~~g~~~eA~~~~~~a 700 (929)
-..|..+-.++.++...++|...++..-+.+..+ |- .....|.+....|...+.+.-+...
T Consensus 69 lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~~L 148 (366)
T KOG2796|consen 69 LQLWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLHKL 148 (366)
T ss_pred HHHHHHHHHHHHHHhhhHHHHhhhhhhccCCCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 4566777777888888888887776665544221 11 1233466677788888887776655
Q ss_pred HhhccchHHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcCC--
Q 002379 701 ISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIK-- 778 (929)
Q Consensus 701 l~~~p~~~~~~~l~~~l~~~~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~-- 778 (929)
...-.+. ..-.+++..+ +..+..|++-+ ..+.+.+..++.-.|.|.-.++.+.+.++.+
T Consensus 149 ~~~V~~i-------i~~~e~~~~~---ESsv~lW~KRl---------~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e 209 (366)
T KOG2796|consen 149 KTVVSKI-------LANLEQGLAE---ESSIRLWRKRL---------GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPE 209 (366)
T ss_pred HHHHHHH-------HHHHHhccch---hhHHHHHHHHH---------HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCc
Confidence 4322111 0111111111 11222333332 4567778888888999999999999999874
Q ss_pred -CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCH------HHHHHHh----hhCCHHHHHHHHHHHHhcCCCCcHHH
Q 002379 779 -HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSA------SAFEKRS----EYSDREMAKNDLNMATQLDPLRTYPY 847 (929)
Q Consensus 779 -~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~lg----~~g~~~~A~~~~~~al~l~p~~~~~~ 847 (929)
.+.....+|++..+.|+.+.|..++++.-+.+..-. .+..+.+ -.+++..|...|.+.+..||.++.+-
T Consensus 210 ~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~ 289 (366)
T KOG2796|consen 210 QEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVAN 289 (366)
T ss_pred ccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhh
Confidence 446788899999999999999888886653322111 1111111 23455666666666666666666666
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCc
Q 002379 848 RYRAAVLMDDQKEVEAVEELSKAIAFKPDL 877 (929)
Q Consensus 848 ~~la~~~~~~g~~~eA~~~l~kal~~~p~~ 877 (929)
++.|.+++-.|+..+|++..+.+++..|..
T Consensus 290 NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 290 NNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 666666666666666666666666666654
No 230
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.69 E-value=0.00022 Score=68.20 Aligned_cols=85 Identities=14% Similarity=0.128 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHccCCHHHHHHHh-------hh-------CCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCC--
Q 002379 796 LKAAYDEMTKLLEKAQYSASAFEKRS-------EY-------SDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQK-- 859 (929)
Q Consensus 796 ~~~A~~~~~~al~~~p~~~~~~~~lg-------~~-------g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~-- 859 (929)
++.|.+.++.....+|.+++.+++.| .. .-+++|+.-|++|+.++|+..++++.+|.+|...+.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 56677777777777777777666655 11 123556666666666666666666666666655432
Q ss_pred ---------HHHHHHHHHHHHhcCCCchHH
Q 002379 860 ---------EVEAVEELSKAIAFKPDLQML 880 (929)
Q Consensus 860 ---------~~eA~~~l~kal~~~p~~~~~ 880 (929)
|++|..+|++|...+|+++.+
T Consensus 87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y 116 (186)
T PF06552_consen 87 PDTAEAEEYFEKATEYFQKAVDEDPNNELY 116 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH-TT-HHH
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCcHHH
Confidence 344444444455555554433
No 231
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.67 E-value=0.0043 Score=67.50 Aligned_cols=78 Identities=14% Similarity=0.110 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHh-c--------CC---------chHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002379 641 FLRFRQSLLLLRLNCQKAAMRCLRLARN-H--------SS---------SEHERLVYEGWILYDTGHREEALSRAEKSIS 702 (929)
Q Consensus 641 ~~~~~lg~~~~~~g~~~~A~~~l~~al~-~--------~p---------~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~ 702 (929)
..|.++|-+++++|.|..+..+|.+|++ . .| ..-++.++.|..|...|++-.|.++|.++..
T Consensus 284 if~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~ 363 (696)
T KOG2471|consen 284 IFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVH 363 (696)
T ss_pred eeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHH
Confidence 4567899999999999999999999985 1 11 2356789999999999999999999999999
Q ss_pred hccch-HHHHHHHHHHH
Q 002379 703 IERTF-EAFFLKAYILA 718 (929)
Q Consensus 703 ~~p~~-~~~~~l~~~l~ 718 (929)
....+ ..|..++.+..
T Consensus 364 vfh~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 364 VFHRNPRLWLRLAECCI 380 (696)
T ss_pred HHhcCcHHHHHHHHHHH
Confidence 87777 88888887765
No 232
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription]
Probab=97.66 E-value=0.00022 Score=59.26 Aligned_cols=81 Identities=31% Similarity=0.380 Sum_probs=65.7
Q ss_pred EEEEE-cCeEEEeehhHHhccCHHHHHHhcCCCC--cCCCCeeEecCCCCCHHHHHHHhhhH-----ccCC---CCC--C
Q 002379 220 VTFCV-RDKEISFVRNKIASLSSPFKAMLYGGFV--ESKRKTIDFSHDGVSVEGLRAVEVYT-----RTSR---VDL--F 286 (929)
Q Consensus 220 v~~~v-~~~~~~~hr~iLaa~S~~F~~mf~~~~~--e~~~~~i~~~~~~~~~~~~~~~l~~~-----Yt~~---~~~--~ 286 (929)
|+++- +|.+|-..|- +|.-|+-.|+||+|.+. |...++|.+ .++....++.+-+|+ ||+. ++. +
T Consensus 19 VkLvS~Ddhefiikre-~AmtSgTiraml~gpg~~se~~~n~v~f--~di~shiLeKvc~Yl~Yk~rY~~~s~eiPeF~I 95 (112)
T KOG3473|consen 19 VKLVSSDDHEFIIKRE-HAMTSGTIRAMLSGPGVFSEAEKNEVYF--RDIPSHILEKVCEYLAYKVRYTNSSTEIPEFDI 95 (112)
T ss_pred eEeecCCCcEEEEeeh-hhhhhhHHHHHHcCCccccccccceEEe--ccchHHHHHHHHHHhhheeeeccccccCCCCCC
Confidence 88887 5667766555 47789999999998755 555679999 999999999999998 7766 222 8
Q ss_pred ChhHHHHHHHHhchhCh
Q 002379 287 CPGIVLELLSFANRFCC 303 (929)
Q Consensus 287 ~~~~~~~ll~~A~~~~~ 303 (929)
++++++|||.+||.+.|
T Consensus 96 ppemaleLL~aAn~Lec 112 (112)
T KOG3473|consen 96 PPEMALELLMAANYLEC 112 (112)
T ss_pred CHHHHHHHHHHhhhhcC
Confidence 99999999999998754
No 233
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.63 E-value=0.0058 Score=67.38 Aligned_cols=239 Identities=15% Similarity=0.065 Sum_probs=139.3
Q ss_pred HHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHHHHHhcCCCCCCh
Q 002379 648 LLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESS 727 (929)
Q Consensus 648 ~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~l~~~l~~~~~~~~~~ 727 (929)
.-..+..+.++-++.-++|++++|+.+.+|..++.- ...-..+|..+|+++++..... +.........+
T Consensus 176 q~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~---lg~s~~~~~~g------ 244 (539)
T PF04184_consen 176 QKAWRERNPQARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEAS---LGKSQFLQHHG------ 244 (539)
T ss_pred HHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHh---hchhhhhhccc------
Confidence 334566788888999999999999999998887642 2334678888888888765433 00000000000
Q ss_pred HHHHHHHHHHhhchhccCch-hHHHHHHHHHHHHcCCHHHHHHHHHHHHcCC----CHHHHHHHHHHHHHhCCHHHHHHH
Q 002379 728 TYVIQLLEEALRCPSDGLRK-GQALNNLGSIYVECGKLDQAENCYINALDIK----HTRAHQGLARVYYLKNELKAAYDE 802 (929)
Q Consensus 728 ~~a~~~~e~Al~~~~~al~~-~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~----~~~a~~~la~~~~~~g~~~~A~~~ 802 (929)
..-+.. ..+-.++ ..+...+|.+..+.|+.++|++.++..++.. .-..+.+|..++...+.+.++...
T Consensus 245 -----~~~e~~--~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~l 317 (539)
T PF04184_consen 245 -----HFWEAW--HRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQAL 317 (539)
T ss_pred -----chhhhh--hccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHH
Confidence 000000 0000111 2455779999999999999999999998763 345889999999999999999988
Q ss_pred HHHHHHH-ccCCHHHHHHHhhhCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHH
Q 002379 803 MTKLLEK-AQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLH 881 (929)
Q Consensus 803 ~~~al~~-~p~~~~~~~~lg~~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~ 881 (929)
+.+.-++ .|+++...+..+ +--++.+-+. ..++.-..+|..- --..|++.+.+|++.+|..+.+.
T Consensus 318 L~kYdDi~lpkSAti~YTaA--------LLkaRav~d~--fs~e~a~rRGls~----ae~~aveAi~RAvefNPHVp~YL 383 (539)
T PF04184_consen 318 LAKYDDISLPKSATICYTAA--------LLKARAVGDK--FSPEAASRRGLSP----AEMNAVEAIHRAVEFNPHVPKYL 383 (539)
T ss_pred HHHhccccCCchHHHHHHHH--------HHHHHhhccc--cCchhhhhcCCCh----hHHHHHHHHHHHHHhCCCCchhh
Confidence 8876433 244444433222 1111111100 0111111111100 12347778888888888776554
Q ss_pred HH-------HHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHH
Q 002379 882 LR-------AAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNR 919 (929)
Q Consensus 882 ~l-------a~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~ 919 (929)
+- =.-+.+.|| .+|+.+---.+..--+-+.++.++..
T Consensus 384 Le~K~LilPPehilkrGD-SEAiaYAf~hL~hWk~veGAL~lL~~ 427 (539)
T PF04184_consen 384 LEMKSLILPPEHILKRGD-SEAIAYAFFHLQHWKRVEGALNLLHC 427 (539)
T ss_pred hccCCCCCChHHhcCCCc-HHHHHHHHHHHHHHhcCHhHHHHHHH
Confidence 21 122334554 66666666666655555555555543
No 234
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.61 E-value=0.00022 Score=68.12 Aligned_cols=94 Identities=20% Similarity=0.194 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcC----------CHHHHHHHHHHHHhcCCCchH-HHHHHHHHHHcC----
Q 002379 827 EMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQ----------KEVEAVEELSKAIAFKPDLQM-LHLRAAFYESIG---- 891 (929)
Q Consensus 827 ~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g----------~~~eA~~~l~kal~~~p~~~~-~~~la~~~~~~g---- 891 (929)
+.|.+.++.....+|.+++.+++.|.++..+. -+++|+.-|++|+.++|+... ++.+|.+|..++
T Consensus 8 E~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~ 87 (186)
T PF06552_consen 8 EHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTP 87 (186)
T ss_dssp HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcC
Confidence 67788888889999999999999988887653 468999999999999998864 446787777654
Q ss_pred -------CHHHHHHHHHHHhccCCCCHHHHHHHHHH
Q 002379 892 -------DLTSAIRDSQAALCLDPNHMETLDLYNRA 920 (929)
Q Consensus 892 -------~~~~A~~~~~~al~l~P~~~~a~~~~~~l 920 (929)
-+++|..+|++|...+|++......+...
T Consensus 88 d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 88 DTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMA 123 (186)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 37888899999999999998766665544
No 235
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=97.51 E-value=0.014 Score=64.90 Aligned_cols=103 Identities=19% Similarity=0.188 Sum_probs=90.4
Q ss_pred hCCHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHH-HHHHHHHHcCCHHHHHHHH
Q 002379 823 YSDREMAKNDLNMATQLDPL-RTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLH-LRAAFYESIGDLTSAIRDS 900 (929)
Q Consensus 823 ~g~~~~A~~~~~~al~l~p~-~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~-~la~~~~~~g~~~~A~~~~ 900 (929)
.|+...|+.++..|+...|. ......++|.++...|-..+|-..+.+++.+....+..+ .+|..|..+.+.++|++.|
T Consensus 620 ~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~ 699 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAF 699 (886)
T ss_pred cCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHH
Confidence 47889999999999999984 445678999999999999999999999999996666555 5699999999999999999
Q ss_pred HHHhccCCCCHHHHHHHHHHHhhhh
Q 002379 901 QAALCLDPNHMETLDLYNRARDQAS 925 (929)
Q Consensus 901 ~~al~l~P~~~~a~~~~~~l~~~~~ 925 (929)
++|++++|++++..+-+.+|.-+.+
T Consensus 700 ~~a~~~~~~~~~~~~~l~~i~c~~~ 724 (886)
T KOG4507|consen 700 RQALKLTTKCPECENSLKLIRCMQF 724 (886)
T ss_pred HHHHhcCCCChhhHHHHHHHHHhhh
Confidence 9999999999999998888876544
No 236
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.46 E-value=0.0002 Score=78.31 Aligned_cols=99 Identities=19% Similarity=0.197 Sum_probs=72.1
Q ss_pred CCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHH-HHHHHHHHcCCHHHHHHHHHH
Q 002379 824 SDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLH-LRAAFYESIGDLTSAIRDSQA 902 (929)
Q Consensus 824 g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~-~la~~~~~~g~~~~A~~~~~~ 902 (929)
++++.|+..|.+|++++|+++..+-+++.++.+.+++..|+..+.++++.+|.....| .+|.+....+.+.+|+..|++
T Consensus 18 ~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~ 97 (476)
T KOG0376|consen 18 KVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALLDLEK 97 (476)
T ss_pred chHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHHHHHH
Confidence 5567777777777777777777777777777777777777777777777777776555 447777777777777777777
Q ss_pred HhccCCCCHHHHHHHHHHHh
Q 002379 903 ALCLDPNHMETLDLYNRARD 922 (929)
Q Consensus 903 al~l~P~~~~a~~~~~~l~~ 922 (929)
...+.|+.+.+...+...+.
T Consensus 98 ~~~l~Pnd~~~~r~~~Ec~~ 117 (476)
T KOG0376|consen 98 VKKLAPNDPDATRKIDECNK 117 (476)
T ss_pred hhhcCcCcHHHHHHHHHHHH
Confidence 77777777777666655443
No 237
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.39 E-value=0.00014 Score=49.87 Aligned_cols=33 Identities=27% Similarity=0.298 Sum_probs=31.1
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHH
Q 002379 503 DLNYASELDPTLSFPYKYRAVAKMEEGQIRAAI 535 (929)
Q Consensus 503 ~~~kal~l~P~~~~a~~~~a~~~~~~g~~~~A~ 535 (929)
+|+++|+++|+++.+|+++|.+|...|++++|+
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 378999999999999999999999999999986
No 238
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.39 E-value=0.0089 Score=60.20 Aligned_cols=139 Identities=12% Similarity=0.068 Sum_probs=98.4
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhc-CCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHH
Q 002379 551 LELRAWLFIAADDYESALRDTLALLALE-SNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVI 629 (929)
Q Consensus 551 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~ 629 (929)
.+.+..++.-.|.|.-.+..+.++++.+ |..+ ....-++.+..+.|+.+.|..+++..+ .-
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p------~L~s~Lgr~~MQ~GD~k~a~~yf~~ve------------k~ 241 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEP------QLLSGLGRISMQIGDIKTAEKYFQDVE------------KV 241 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccH------HHHHHHHHHHHhcccHHHHHHHHHHHH------------HH
Confidence 3444555666667777777777777666 3333 333446666666666666655552111 01
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch
Q 002379 630 NQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF 707 (929)
Q Consensus 630 ~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~ 707 (929)
..-+..-..+..+..+.+.++.-.+++..|...+.+.+..+|.++.+.++.|.+++..|+...|++..+.++.+.|..
T Consensus 242 ~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 242 TQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred HhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 112222234455667788888889999999999999999999999999999999999999999999999999999876
No 239
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.37 E-value=0.016 Score=63.28 Aligned_cols=170 Identities=16% Similarity=0.094 Sum_probs=122.9
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHcC------CCHHHHHHHHHHHHH---hCCHHHHHHHHHH-HHHHccCCHHHH
Q 002379 748 GQALNNLGSIYVECGKLDQAENCYINALDI------KHTRAHQGLARVYYL---KNELKAAYDEMTK-LLEKAQYSASAF 817 (929)
Q Consensus 748 ~~a~~~lg~~~~~~g~~~eA~~~~~~al~~------~~~~a~~~la~~~~~---~g~~~~A~~~~~~-al~~~p~~~~~~ 817 (929)
++...++-..|....+|+.-+...+..-.+ +.+...+.+|.++.+ .|+.++|++.+.. +....+.+++.+
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~ 220 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL 220 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence 355667777899999999999988887666 345677788888888 8999999999999 445566777877
Q ss_pred HHHhh-------------hCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHH-hc------C---
Q 002379 818 EKRSE-------------YSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAI-AF------K--- 874 (929)
Q Consensus 818 ~~lg~-------------~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal-~~------~--- 874 (929)
...|. ....++|+..|.++.+++| +.+.-.+++.++...|.-.+....+++.. .+ .
T Consensus 221 gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~-~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~ 299 (374)
T PF13281_consen 221 GLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEP-DYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSL 299 (374)
T ss_pred HHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCc-cccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccc
Confidence 77771 1246899999999999996 66677788888887776444443333322 11 1
Q ss_pred CCchHHH---HHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHH
Q 002379 875 PDLQMLH---LRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYN 918 (929)
Q Consensus 875 p~~~~~~---~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~ 918 (929)
.....++ .++.+..-.||+++|.+.+++++++.|...+......
T Consensus 300 ~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~l~St~~ 346 (374)
T PF13281_consen 300 EKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWELESTLE 346 (374)
T ss_pred cccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchhHHHHHH
Confidence 1122333 5577777799999999999999999877655433333
No 240
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.37 E-value=0.00039 Score=51.11 Aligned_cols=42 Identities=19% Similarity=0.014 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHH
Q 002379 641 FLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGW 682 (929)
Q Consensus 641 ~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~ 682 (929)
.++..+|..|..+|++++|++.|+++++.+|+++.++..+|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 466777777888888888888888888888887777777664
No 241
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.35 E-value=0.01 Score=59.26 Aligned_cols=163 Identities=14% Similarity=0.090 Sum_probs=94.3
Q ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCch------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch------
Q 002379 640 SFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE------HERLVYEGWILYDTGHREEALSRAEKSISIERTF------ 707 (929)
Q Consensus 640 ~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~------~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~------ 707 (929)
+..|...+..|...+++++|..++.+|.+-..++ +.++...|.+..+...+.|+..+|+++..+.-.+
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtA 110 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTA 110 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchH
Confidence 4566777888889999999999999998554333 3455667888888899999999999998765333
Q ss_pred -HHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCch---hHHHHHHHHHHHHcCCHHHHHHHHHHHHcC------
Q 002379 708 -EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRK---GQALNNLGSIYVECGKLDQAENCYINALDI------ 777 (929)
Q Consensus 708 -~~~~~l~~~l~~~~~~~~~~~~a~~~~e~Al~~~~~al~~---~~a~~~lg~~~~~~g~~~eA~~~~~~al~~------ 777 (929)
.+.-..+.. +.......+++.|.++...++..-+. .+.+...+.++.+..++++|...+.+-..+
T Consensus 111 AmaleKAak~-----lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~ 185 (308)
T KOG1585|consen 111 AMALEKAAKA-----LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDA 185 (308)
T ss_pred HHHHHHHHHH-----hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhh
Confidence 111111111 12223444444555555444433221 244555556666666666665555443332
Q ss_pred --CCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 002379 778 --KHTRAHQGLARVYYLKNELKAAYDEMTKLL 807 (929)
Q Consensus 778 --~~~~a~~~la~~~~~~g~~~~A~~~~~~al 807 (929)
.....+.....+|....++..|...++..-
T Consensus 186 y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~ 217 (308)
T KOG1585|consen 186 YNSQCKAYVAAILVYLYAHDYVQAEKCYRDCS 217 (308)
T ss_pred cccHHHHHHHHHHHHhhHHHHHHHHHHhcchh
Confidence 111234444444455555666655555543
No 242
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=0.0016 Score=64.61 Aligned_cols=120 Identities=18% Similarity=0.180 Sum_probs=86.1
Q ss_pred HHHHHHhhHHHHhcccHHHHHHHHHHHHhcCccccHHHHHHHHHHhchHHHHHHHHHhhhccCCCchhhhHHHHHHhhhh
Q 002379 419 MLALHQLGCVMFEREEYKDACYYFEAAADAGHIYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNLGR 498 (929)
Q Consensus 419 a~~~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~~~a~la~~~~~~g~a~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 498 (929)
..++++.|+-+++.|+|.+|...|..|+..-... .+........|
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L-----------------------~lkEkP~e~eW------------ 222 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNL-----------------------QLKEKPGEPEW------------ 222 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHH-----------------------HhccCCCChHH------------
Confidence 4578899999999999999999999987641000 00011111122
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccC-CHhHHHHHHHHHHHhccHHHHHHHHHHHHhh
Q 002379 499 EKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLALLAL 577 (929)
Q Consensus 499 ~Ai~~~~kal~l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~ 577 (929)
++++......+.+.+.|+...|+|-++++....++...| +..+++.+|.++...-+.++|.+.|.+++++
T Consensus 223 ---------~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 223 ---------LELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred ---------HHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 223333445677778888888888888888888887777 7777888888888888888888888888888
Q ss_pred cCCch
Q 002379 578 ESNYM 582 (929)
Q Consensus 578 ~p~~~ 582 (929)
+|.-.
T Consensus 294 dpsla 298 (329)
T KOG0545|consen 294 DPSLA 298 (329)
T ss_pred ChhhH
Confidence 87766
No 243
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.27 E-value=0.00057 Score=50.25 Aligned_cols=40 Identities=28% Similarity=0.297 Sum_probs=30.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHH
Q 002379 880 LHLRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNR 919 (929)
Q Consensus 880 ~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~ 919 (929)
++.+|.+|..+|++++|++.|+++++.+|++++++..+++
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 4466777778888888888888888888888877777654
No 244
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.27 E-value=0.18 Score=50.32 Aligned_cols=178 Identities=16% Similarity=0.090 Sum_probs=102.9
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC----C-ch-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHH
Q 002379 642 LRFRQSLLLLRLNCQKAAMRCLRLARNHS----S-SE-HERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAY 715 (929)
Q Consensus 642 ~~~~lg~~~~~~g~~~~A~~~l~~al~~~----p-~~-~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~l~~ 715 (929)
++..-|..|....++..|=..|.++-+.. . ++ ...|...+.+| +.++.++|+.++++++++..+.
T Consensus 36 l~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cy-kk~~~~eAv~cL~~aieIyt~~-------- 106 (288)
T KOG1586|consen 36 LYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCY-KKVDPEEAVNCLEKAIEIYTDM-------- 106 (288)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHh-hccChHHHHHHHHHHHHHHHhh--------
Confidence 44455666666666776666666664331 1 11 33344444444 4458888888888888764433
Q ss_pred HHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHc-CCHHHHHHHHHHHHcC---CC-----HHHHHHH
Q 002379 716 ILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVEC-GKLDQAENCYINALDI---KH-----TRAHQGL 786 (929)
Q Consensus 716 ~l~~~~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~-g~~~eA~~~~~~al~~---~~-----~~a~~~l 786 (929)
| ++..| +..+..+|.+|... .++++|+.+|+++-+. .. ...+...
T Consensus 107 -----G-----------rf~~a----------Ak~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKv 160 (288)
T KOG1586|consen 107 -----G-----------RFTMA----------AKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKV 160 (288)
T ss_pred -----h-----------HHHHH----------HhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHH
Confidence 1 22222 23356778887765 8899999999988776 11 1245556
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHhhhCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHH
Q 002379 787 ARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEE 866 (929)
Q Consensus 787 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~ 866 (929)
|..-...+++.+|++.|++.....-++.-.-+.. -..++.-|.+++-..+.-.+...
T Consensus 161 A~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~-----------------------KdyflkAgLChl~~~D~v~a~~A 217 (288)
T KOG1586|consen 161 AQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSA-----------------------KDYFLKAGLCHLCKADEVNAQRA 217 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHH-----------------------HHHHHHHHHHhHhcccHHHHHHH
Confidence 6666777888888888888776554443321100 01122334455555555555666
Q ss_pred HHHHHhcCCCc
Q 002379 867 LSKAIAFKPDL 877 (929)
Q Consensus 867 l~kal~~~p~~ 877 (929)
+++..+++|..
T Consensus 218 Leky~~~dP~F 228 (288)
T KOG1586|consen 218 LEKYQELDPAF 228 (288)
T ss_pred HHHHHhcCCcc
Confidence 66666666654
No 245
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=97.27 E-value=0.00019 Score=71.45 Aligned_cols=63 Identities=14% Similarity=0.155 Sum_probs=52.2
Q ss_pred EEEEEcCeEEEeehhHHhccCHHHHHHhcCCCCcCCCC--eeEecCCCCCHHHHHHHhhhHccCCCC
Q 002379 220 VTFCVRDKEISFVRNKIASLSSPFKAMLYGGFVESKRK--TIDFSHDGVSVEGLRAVEVYTRTSRVD 284 (929)
Q Consensus 220 v~~~v~~~~~~~hr~iLaa~S~~F~~mf~~~~~e~~~~--~i~~~~~~~~~~~~~~~l~~~Yt~~~~ 284 (929)
|.++.....|++||++||+|||+|+.+.+.+-.-.... .|.+ -+++-.+|.++|+|+|||+..
T Consensus 133 ldiiFkeTcfpahRA~laaRCpffK~l~nsd~e~~ae~i~dik~--ag~dm~~feafLh~l~tgEfg 197 (401)
T KOG2838|consen 133 LDIIFKETCFPAHRAFLAARCPFFKILANSDEEPEAEDICDIKF--AGFDMDAFEAFLHSLITGEFG 197 (401)
T ss_pred ceeeeeeccchHHHHHHHhhCcchhhhccCCCCcchhhhhhhhh--hccChHHHHHHHHHHHhcccc
Confidence 88888889999999999999999999987643221111 5666 789999999999999999987
No 246
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.25 E-value=0.018 Score=60.02 Aligned_cols=152 Identities=15% Similarity=0.030 Sum_probs=117.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHcCCCHH--HHHHHHHHHHHhCCHHHHHHHHHHHHHH-ccCCHHHHHH-----Hh--h
Q 002379 753 NLGSIYVECGKLDQAENCYINALDIKHTR--AHQGLARVYYLKNELKAAYDEMTKLLEK-AQYSASAFEK-----RS--E 822 (929)
Q Consensus 753 ~lg~~~~~~g~~~eA~~~~~~al~~~~~~--a~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~-----lg--~ 822 (929)
.-+.+....|++-+|...+++.++.-|.+ ++..--.+++..|+...-...+++.+.. +++.+-.-+. .| +
T Consensus 108 ~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E 187 (491)
T KOG2610|consen 108 AKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEE 187 (491)
T ss_pred hhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHH
Confidence 33455667789999999999998875554 5555667888899999999999999877 5555332222 22 7
Q ss_pred hCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCch-----HHHHHHHHHHHcCCHHHHH
Q 002379 823 YSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQ-----MLHLRAAFYESIGDLTSAI 897 (929)
Q Consensus 823 ~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~-----~~~~la~~~~~~g~~~~A~ 897 (929)
.|-+++|.+.-+++++++|.+..+...++.++...|++.++.+...+.-..=.... .++.-|.++...+.++.|+
T Consensus 188 ~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~al 267 (491)
T KOG2610|consen 188 CGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKAL 267 (491)
T ss_pred hccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHH
Confidence 79999999999999999999999999999999999999999998876533222221 2334588899999999999
Q ss_pred HHHHHHh
Q 002379 898 RDSQAAL 904 (929)
Q Consensus 898 ~~~~~al 904 (929)
+.|.+-+
T Consensus 268 eIyD~ei 274 (491)
T KOG2610|consen 268 EIYDREI 274 (491)
T ss_pred HHHHHHH
Confidence 9997654
No 247
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=97.25 E-value=0.79 Score=55.13 Aligned_cols=84 Identities=14% Similarity=0.065 Sum_probs=46.9
Q ss_pred hhhHHHHHHHHHHhc-CCC---ChHHHHHHHHHHH-HhCCHHHHHHHHHHHhcccCCHh-------HHHHHHHHHHHhcc
Q 002379 496 LGREKIVDLNYASEL-DPT---LSFPYKYRAVAKM-EEGQIRAAISEIDRIIVFKLSVD-------CLELRAWLFIAADD 563 (929)
Q Consensus 496 ~~~~Ai~~~~kal~l-~P~---~~~a~~~~a~~~~-~~g~~~~A~~~~~~al~~~~~~~-------~~~~~a~~~~~~g~ 563 (929)
.-..|+.+++-+++. .+. .+.+++.+|.+++ +..+++.|...+++++.+...+. +...++.++.+.+.
T Consensus 36 LI~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~ 115 (608)
T PF10345_consen 36 LIATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNP 115 (608)
T ss_pred HHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCH
Confidence 444677777776642 111 2345666666665 56677777777777765443211 13344555555555
Q ss_pred HHHHHHHHHHHHhhcCC
Q 002379 564 YESALRDTLALLALESN 580 (929)
Q Consensus 564 ~~~A~~~~~~al~~~p~ 580 (929)
.. |....++.++...+
T Consensus 116 ~~-a~~~l~~~I~~~~~ 131 (608)
T PF10345_consen 116 KA-ALKNLDKAIEDSET 131 (608)
T ss_pred HH-HHHHHHHHHHHHhc
Confidence 55 66666666665444
No 248
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.21 E-value=0.099 Score=60.33 Aligned_cols=155 Identities=17% Similarity=0.006 Sum_probs=112.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHcCCCHH---------HHHHHHHHHH----HhCCHHHHHHHHHHHHHHccCCHHHHH
Q 002379 752 NNLGSIYVECGKLDQAENCYINALDIKHTR---------AHQGLARVYY----LKNELKAAYDEMTKLLEKAQYSASAFE 818 (929)
Q Consensus 752 ~~lg~~~~~~g~~~eA~~~~~~al~~~~~~---------a~~~la~~~~----~~g~~~~A~~~~~~al~~~p~~~~~~~ 818 (929)
..+-.+.--.|+-+.++..+.++.+..+.. .|+....... ...+.+.|.+.+....+..|+......
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~ 271 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLF 271 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHH
Confidence 334444445688888888888887753221 1111111111 244577888889999999998888777
Q ss_pred HHh----hhCCHHHHHHHHHHHHhcCC----CCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHH--HHHHHHH
Q 002379 819 KRS----EYSDREMAKNDLNMATQLDP----LRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLH--LRAAFYE 888 (929)
Q Consensus 819 ~lg----~~g~~~~A~~~~~~al~l~p----~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~--~la~~~~ 888 (929)
..| ..|+.++|++.|++++.... -..-.++.+|+++.-+++|++|.+.+.+..+.+.-....| ..|.++.
T Consensus 272 ~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~ 351 (468)
T PF10300_consen 272 FEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLL 351 (468)
T ss_pred HHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 777 46889999999998875333 2334677899999999999999999999999877666555 4599999
Q ss_pred HcCCH-------HHHHHHHHHHhcc
Q 002379 889 SIGDL-------TSAIRDSQAALCL 906 (929)
Q Consensus 889 ~~g~~-------~~A~~~~~~al~l 906 (929)
..|+. ++|.+.|+++-.+
T Consensus 352 ~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 352 MLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred hhccchhhhhhHHHHHHHHHHHHHH
Confidence 99999 8888888887654
No 249
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.20 E-value=0.00032 Score=48.17 Aligned_cols=32 Identities=19% Similarity=0.189 Sum_probs=21.6
Q ss_pred HHHHHhcCCchHHHHHHHHHHHHHcCCHHHHH
Q 002379 663 LRLARNHSSSEHERLVYEGWILYDTGHREEAL 694 (929)
Q Consensus 663 l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~ 694 (929)
|+++++++|+++.+|+++|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 56666666666666677777666666666664
No 250
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.19 E-value=0.91 Score=54.36 Aligned_cols=230 Identities=14% Similarity=0.062 Sum_probs=129.7
Q ss_pred CChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccCCHhHHHHHHHHHHHhccHHHHHHHHHHHHhhcCCchhhhccccHHH
Q 002379 513 TLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDH 592 (929)
Q Consensus 513 ~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~ 592 (929)
+.+..|..+|.+..+.|...+|++.|-++- +|..|........+.|.|++-++++..+-+...... ...
T Consensus 1102 n~p~vWsqlakAQL~~~~v~dAieSyikad----Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~-------id~ 1170 (1666)
T KOG0985|consen 1102 NEPAVWSQLAKAQLQGGLVKDAIESYIKAD----DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPY-------IDS 1170 (1666)
T ss_pred CChHHHHHHHHHHHhcCchHHHHHHHHhcC----CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCcc-------chH
Confidence 345667777777777777777777666652 455666666666667777777766666554322211 111
Q ss_pred HHHHHHHhhcccchHHHHHHhhhccccccccccH--HHH----HHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 002379 593 LVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSL--AVI----NQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLA 666 (929)
Q Consensus 593 ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l--~~~----~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~a 666 (929)
-+-..|...++..+-++++ ...+..+++.+ .+| -++-++--.+..-|..++..+..+|+|..|...-++|
T Consensus 1171 eLi~AyAkt~rl~elE~fi----~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1171 ELIFAYAKTNRLTELEEFI----AGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred HHHHHHHHhchHHHHHHHh----cCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 1222333333333332222 11111111100 000 0111111223445677888888999999998888776
Q ss_pred HhcCC-----------c--------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch-HHHHHHHHHHHhc
Q 002379 667 RNHSS-----------S--------------EHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADT 720 (929)
Q Consensus 667 l~~~p-----------~--------------~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~~~~~l~~~l~~~ 720 (929)
-.... . +++-+-.+...|...|-++|-+..++.++.+..-+ ..+..++..|..-
T Consensus 1247 ns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky 1326 (1666)
T KOG0985|consen 1247 NSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKY 1326 (1666)
T ss_pred cchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc
Confidence 32210 0 12334556777889999999999999999998888 7777778777665
Q ss_pred CCCCCChHHHHHHHHHHhhchh---ccC---------chhHHHHHHHHHHHHcCCHHHHHH
Q 002379 721 NLDPESSTYVIQLLEEALRCPS---DGL---------RKGQALNNLGSIYVECGKLDQAEN 769 (929)
Q Consensus 721 ~~~~~~~~~a~~~~e~Al~~~~---~al---------~~~~a~~~lg~~~~~~g~~~eA~~ 769 (929)
. .++..++++ ..+ +....|..+...|..-..|+.|.-
T Consensus 1327 k------------p~km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNAa~ 1375 (1666)
T KOG0985|consen 1327 K------------PEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNAAL 1375 (1666)
T ss_pred C------------HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Confidence 3 222222221 111 123567777777777777776654
No 251
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.16 E-value=0.028 Score=58.68 Aligned_cols=125 Identities=10% Similarity=-0.073 Sum_probs=92.1
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHhhcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHH
Q 002379 553 LRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQM 632 (929)
Q Consensus 553 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~a 632 (929)
..+.+....|++.+|-..++++++..|.+. -+......++...|+...- ...+++.
T Consensus 108 ~~aai~~~~g~~h~a~~~wdklL~d~PtDl------la~kfsh~a~fy~G~~~~~------------------k~ai~kI 163 (491)
T KOG2610|consen 108 AKAAILWGRGKHHEAAIEWDKLLDDYPTDL------LAVKFSHDAHFYNGNQIGK------------------KNAIEKI 163 (491)
T ss_pred hhHHHhhccccccHHHHHHHHHHHhCchhh------hhhhhhhhHHHhccchhhh------------------hhHHHHh
Confidence 345555677899999999999999999988 3333344444444444333 3334666
Q ss_pred Hhc-CCCChH---HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002379 633 LIN-DPGKSF---LRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSI 701 (929)
Q Consensus 633 l~~-~p~~~~---~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al 701 (929)
+.. +|+.|- +.-..+..+...|-|++|.+..+++++++|.+..+....+.++...|++.++.+...+.-
T Consensus 164 ip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~te 236 (491)
T KOG2610|consen 164 IPKWNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTE 236 (491)
T ss_pred ccccCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcc
Confidence 665 555543 333455667788999999999999999999999999999999999999999999887643
No 252
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.15 E-value=0.017 Score=56.05 Aligned_cols=100 Identities=18% Similarity=0.067 Sum_probs=72.1
Q ss_pred hhCCHHHHHHHHHHHHhcCCCC---cHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHcCCHHHHHH
Q 002379 822 EYSDREMAKNDLNMATQLDPLR---TYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLHLRAAFYESIGDLTSAIR 898 (929)
Q Consensus 822 ~~g~~~~A~~~~~~al~l~p~~---~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~la~~~~~~g~~~~A~~ 898 (929)
+.+++++|+..++.++....+. .-+-..+|.+..+.|++++|+..+.....-.=.......+|.++...|+.++|+.
T Consensus 101 e~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ 180 (207)
T COG2976 101 EANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARA 180 (207)
T ss_pred hhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHH
Confidence 4577788888888777543321 3345689999999999999999987653221122223477999999999999999
Q ss_pred HHHHHhccCCCCHHHHHHHHHHH
Q 002379 899 DSQAALCLDPNHMETLDLYNRAR 921 (929)
Q Consensus 899 ~~~~al~l~P~~~~a~~~~~~l~ 921 (929)
.|+++++.+++.+.-..+.=++.
T Consensus 181 ay~kAl~~~~s~~~~~~lqmKLn 203 (207)
T COG2976 181 AYEKALESDASPAAREILQMKLN 203 (207)
T ss_pred HHHHHHHccCChHHHHHHHhHHH
Confidence 99999999876665444443443
No 253
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.15 E-value=0.0037 Score=67.04 Aligned_cols=91 Identities=16% Similarity=0.050 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCch---HHH-HHHHHHHHcCCHHHHHHHHHH
Q 002379 827 EMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQ---MLH-LRAAFYESIGDLTSAIRDSQA 902 (929)
Q Consensus 827 ~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~---~~~-~la~~~~~~g~~~~A~~~~~~ 902 (929)
+.|...|+.+++..|.+...|......+...|+.+.|...|++++..-|... .++ .....-...|+.+......++
T Consensus 53 ~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R 132 (280)
T PF05843_consen 53 KRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKR 132 (280)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3344555555555555555666666667777777777777777777666554 222 336666667777777777777
Q ss_pred HhccCCCCHHHHHHH
Q 002379 903 ALCLDPNHMETLDLY 917 (929)
Q Consensus 903 al~l~P~~~~a~~~~ 917 (929)
+.+..|+........
T Consensus 133 ~~~~~~~~~~~~~f~ 147 (280)
T PF05843_consen 133 AEELFPEDNSLELFS 147 (280)
T ss_dssp HHHHTTTS-HHHHHH
T ss_pred HHHHhhhhhHHHHHH
Confidence 777777755554433
No 254
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.15 E-value=0.58 Score=51.33 Aligned_cols=60 Identities=13% Similarity=-0.065 Sum_probs=47.2
Q ss_pred cHHHHHHH--HHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002379 844 TYPYRYRA--AVLMDDQKEVEAVEELSKAIAFKPDLQMLHLRAAFYESIGDLTSAIRDSQAA 903 (929)
Q Consensus 844 ~~~~~~la--~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~a 903 (929)
.+.-+.++ ..++..|+|.++.-+-.-..++.|+...+.++|.+.....+|++|..++...
T Consensus 460 ~eian~LaDAEyLysqgey~kc~~ys~WL~~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 460 EEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAPSPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 33444443 4567889999999998888899996667778899999999999999887654
No 255
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.13 E-value=0.0061 Score=60.71 Aligned_cols=72 Identities=21% Similarity=0.150 Sum_probs=60.1
Q ss_pred CCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHH-HHHHHHHHcCCHHHHHHHHHHHhccCCCCHHH
Q 002379 842 LRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLH-LRAAFYESIGDLTSAIRDSQAALCLDPNHMET 913 (929)
Q Consensus 842 ~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~-~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a 913 (929)
.....+.+++.+++..|+|-++++.....+...|++..++ .+|.++...=+.++|..+|.++|+++|.-..+
T Consensus 228 ~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasv 300 (329)
T KOG0545|consen 228 MITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASV 300 (329)
T ss_pred hhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHH
Confidence 3455778888899999999999999999999999887555 66888888889999999999999999976543
No 256
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.12 E-value=0.063 Score=63.44 Aligned_cols=261 Identities=17% Similarity=0.037 Sum_probs=181.0
Q ss_pred CCChHHHHHHHHHHHHh-----cCHHHHHHHHHHHHhc-----CCchHHHHHHHHHHHHHcC-----CHHHHHHHHHHHH
Q 002379 637 PGKSFLRFRQSLLLLRL-----NCQKAAMRCLRLARNH-----SSSEHERLVYEGWILYDTG-----HREEALSRAEKSI 701 (929)
Q Consensus 637 p~~~~~~~~lg~~~~~~-----g~~~~A~~~l~~al~~-----~p~~~~~~~~lg~~~~~~g-----~~~eA~~~~~~al 701 (929)
-.+..+...+|.+|..- .+.+.|+.+|+.+... .-..+.+.+.+|.+|.+.. +++.|+.+|.++.
T Consensus 241 ~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA 320 (552)
T KOG1550|consen 241 LGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAA 320 (552)
T ss_pred hcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHH
Confidence 34677778888888764 5889999999998761 1114667888999998853 6788999999988
Q ss_pred hhccchHHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCch--hHHHHHHHHHHHHc----CCHHHHHHHHHHHH
Q 002379 702 SIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRK--GQALNNLGSIYVEC----GKLDQAENCYINAL 775 (929)
Q Consensus 702 ~~~p~~~~~~~l~~~l~~~~~~~~~~~~a~~~~e~Al~~~~~al~~--~~a~~~lg~~~~~~----g~~~eA~~~~~~al 775 (929)
..... ++.+.++..+.... ...++.+|.++|..+.+. ..+.+.++.+|..- -+...|..+|.++.
T Consensus 321 ~~g~~-~a~~~lg~~~~~g~--------~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA 391 (552)
T KOG1550|consen 321 ELGNP-DAQYLLGVLYETGT--------KERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAA 391 (552)
T ss_pred hcCCc-hHHHHHHHHHHcCC--------ccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHH
Confidence 76433 45666776665443 112566777777777654 47888888887753 56889999999999
Q ss_pred cCCCHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHccCCHH----HHHHHh--------hhCCHHHHHHHHHHHHhcCCC
Q 002379 776 DIKHTRAHQGLARVYYLK-NELKAAYDEMTKLLEKAQYSAS----AFEKRS--------EYSDREMAKNDLNMATQLDPL 842 (929)
Q Consensus 776 ~~~~~~a~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~~~----~~~~lg--------~~g~~~~A~~~~~~al~l~p~ 842 (929)
+.+++.+.+.++..+..- +.+..+.-.+....+..-+.+. ...... ...+...+...+.++.. ..
T Consensus 392 ~~g~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~--~g 469 (552)
T KOG1550|consen 392 EKGNPSAAYLLGAFYEYGVGRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAA--QG 469 (552)
T ss_pred HccChhhHHHHHHHHHHccccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchhHHHHHHHHHHh--cc
Confidence 998887777777665544 6666666655555443322211 111111 12344566666666543 45
Q ss_pred CcHHHHHHHHHHHhc----CCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHc---CCHHHHHHHHHHHhccCCCC
Q 002379 843 RTYPYRYRAAVLMDD----QKEVEAVEELSKAIAFKPDLQMLHLRAAFYESI---GDLTSAIRDSQAALCLDPNH 910 (929)
Q Consensus 843 ~~~~~~~la~~~~~~----g~~~eA~~~l~kal~~~p~~~~~~~la~~~~~~---g~~~~A~~~~~~al~l~P~~ 910 (929)
++.+...+|.+|..- .+++.|...|.++.... ....+++|..+..- .....|.++|.++.+.+...
T Consensus 470 ~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~--~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~~~~~ 542 (552)
T KOG1550|consen 470 NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG--AQALFNLGYMHEHGEGIKVLHLAKRYYDQASEEDSRA 542 (552)
T ss_pred CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh--hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHhcCchh
Confidence 678888899888765 36999999999998877 55666888888762 22789999999998877654
No 257
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.10 E-value=0.00076 Score=46.35 Aligned_cols=34 Identities=24% Similarity=0.344 Sum_probs=30.3
Q ss_pred HHHHHHhhHHHHhcccHHHHHHHHHHHHhcCccc
Q 002379 419 MLALHQLGCVMFEREEYKDACYYFEAAADAGHIY 452 (929)
Q Consensus 419 a~~~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~ 452 (929)
+.+++.+|.+++..|+|++|+..|+++++++|.+
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 4678999999999999999999999999999864
No 258
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.09 E-value=0.22 Score=55.36 Aligned_cols=157 Identities=16% Similarity=0.172 Sum_probs=106.5
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHcCC------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccC-CHH----H
Q 002379 748 GQALNNLGSIYVECGKLDQAENCYINALDIK------HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQY-SAS----A 816 (929)
Q Consensus 748 ~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~------~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~----~ 816 (929)
...+...+.+....|+++.|...+.++.... .+.+....+..+...|+..+|+..++..+..... ... .
T Consensus 146 ~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~ 225 (352)
T PF02259_consen 146 AETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNA 225 (352)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHH
Confidence 4779999999999999999999999999874 6788889999999999999999999999873222 111 0
Q ss_pred HHHHhhhCCH----HHHHHHHHHHHhcCCCCcHHHHHHHHHHHhc------CCHHHHHHHHHHHHhcCCCchH-HHHHHH
Q 002379 817 FEKRSEYSDR----EMAKNDLNMATQLDPLRTYPYRYRAAVLMDD------QKEVEAVEELSKAIAFKPDLQM-LHLRAA 885 (929)
Q Consensus 817 ~~~lg~~g~~----~~A~~~~~~al~l~p~~~~~~~~la~~~~~~------g~~~eA~~~l~kal~~~p~~~~-~~~la~ 885 (929)
....+..... ........ ....+.++..+|...... +..++++..|+++++++|+... ++..|.
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~ 300 (352)
T PF02259_consen 226 ELKSGLLESLEVISSTNLDKES-----KELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWAL 300 (352)
T ss_pred HHhhccccccccccccchhhhh-----HHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHH
Confidence 0000000000 00000000 011245566777766666 8899999999999999997754 334454
Q ss_pred HHHHcC-----------------CHHHHHHHHHHHhccCCC
Q 002379 886 FYESIG-----------------DLTSAIRDSQAALCLDPN 909 (929)
Q Consensus 886 ~~~~~g-----------------~~~~A~~~~~~al~l~P~ 909 (929)
.+...= -...|+..|-+++...|+
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 301 FNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred HHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 444321 124599999999999998
No 259
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.08 E-value=0.0027 Score=63.04 Aligned_cols=81 Identities=19% Similarity=0.171 Sum_probs=49.8
Q ss_pred CHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHH-HHHHHHHHcCCHHHHHHHHHHH
Q 002379 825 DREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLH-LRAAFYESIGDLTSAIRDSQAA 903 (929)
Q Consensus 825 ~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~-~la~~~~~~g~~~~A~~~~~~a 903 (929)
.+..|+..|.+++.++|..+..|.+.+.++++.++++.+.....+++++.|+....+ .+|.+......+++|+..+++|
T Consensus 25 ~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra 104 (284)
T KOG4642|consen 25 RYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRA 104 (284)
T ss_pred hhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 345555566666666666666666666666666666666666666666666665443 4466666666666666666666
Q ss_pred hc
Q 002379 904 LC 905 (929)
Q Consensus 904 l~ 905 (929)
..
T Consensus 105 ~s 106 (284)
T KOG4642|consen 105 YS 106 (284)
T ss_pred HH
Confidence 44
No 260
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.04 E-value=0.35 Score=49.22 Aligned_cols=216 Identities=13% Similarity=0.066 Sum_probs=127.4
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHhc-CHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHH-HHHHHHHHHHhhccch
Q 002379 630 NQMLINDPGKSFLRFRQSLLLLRLN-CQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHRE-EALSRAEKSISIERTF 707 (929)
Q Consensus 630 ~~al~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~-eA~~~~~~al~~~p~~ 707 (929)
..++..+|.+-.+|..+-.++..++ +..+-++.+...++-+|.+-.+|...-.+....|++. .-++..+.++..+..+
T Consensus 67 ~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKN 146 (318)
T KOG0530|consen 67 EDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKN 146 (318)
T ss_pred HHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccc
Confidence 6677778888888777766665543 5667777888888888888888888777777777666 5556666666544433
Q ss_pred HHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCHHHHHHHH
Q 002379 708 EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIKHTRAHQGLA 787 (929)
Q Consensus 708 ~~~~~l~~~l~~~~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~~~a~~~la 787 (929)
-.+|...-
T Consensus 147 ------------------------------------------------------------------------YHaWshRq 154 (318)
T KOG0530|consen 147 ------------------------------------------------------------------------YHAWSHRQ 154 (318)
T ss_pred ------------------------------------------------------------------------hhhhHHHH
Confidence 12333333
Q ss_pred HHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHh----h-h-----CCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHh-
Q 002379 788 RVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS----E-Y-----SDREMAKNDLNMATQLDPLRTYPYRYRAAVLMD- 856 (929)
Q Consensus 788 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg----~-~-----g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~- 856 (929)
.+...-+.++.-+.+..++++.+--|..+|..+- . . ...+.-+.+..+.+.+.|.+..+|.+|.-++..
T Consensus 155 W~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l~~d 234 (318)
T KOG0530|consen 155 WVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKDKILLVPNNESAWNYLKGLLELD 234 (318)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhc
Confidence 3333444455555555555555555555554443 0 0 123455666777788888888888888877775
Q ss_pred cC--CHHHHHHHHHHHH-hcCCCchHHH-HHHHHH------HHcCCHH---HHHHHHHHHh-ccCCCCHHHHHHH
Q 002379 857 DQ--KEVEAVEELSKAI-AFKPDLQMLH-LRAAFY------ESIGDLT---SAIRDSQAAL-CLDPNHMETLDLY 917 (929)
Q Consensus 857 ~g--~~~eA~~~l~kal-~~~p~~~~~~-~la~~~------~~~g~~~---~A~~~~~~al-~l~P~~~~a~~~~ 917 (929)
.| .+.+-.......+ ...-.++.+. .+...| .+.+.-+ +|...|+..- +.||=....|...
T Consensus 235 ~gl~s~s~vv~f~~~l~~~~~~~sP~lla~l~d~~~e~~l~~~~~~~~~a~~a~~ly~~La~~~DpiR~nyW~~~ 309 (318)
T KOG0530|consen 235 SGLSSDSKVVSFVENLYLQLPKRSPFLLAFLLDLYAEDALAYKSSAEELARKAVKLYEDLAIKVDPIRKNYWRHK 309 (318)
T ss_pred cCCcCCchHHHHHHHHhhccCCCChhHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhhccCcHHHHHHHHH
Confidence 44 2333444444433 2222233322 222222 2234444 5777777665 7888776666655
No 261
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.02 E-value=0.0024 Score=66.44 Aligned_cols=103 Identities=19% Similarity=0.191 Sum_probs=61.1
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHhhhCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHH
Q 002379 783 HQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVE 862 (929)
Q Consensus 783 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~e 862 (929)
+-.-|+-|++..+|..|...|.+.+.....++++ ++..|.++|.+....|+|..
T Consensus 84 ~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dl--------------------------navLY~NRAAa~~~l~NyRs 137 (390)
T KOG0551|consen 84 YKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDL--------------------------NAVLYTNRAAAQLYLGNYRS 137 (390)
T ss_pred HHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccH--------------------------HHHHHhhHHHHHHHHHHHHH
Confidence 4445777888888888888888888776555443 22334455555555555555
Q ss_pred HHHHHHHHHhcCCCchHHHHH-HHHHHHcCCHHHHHHHHHHHhccCCCCH
Q 002379 863 AVEELSKAIAFKPDLQMLHLR-AAFYESIGDLTSAIRDSQAALCLDPNHM 911 (929)
Q Consensus 863 A~~~l~kal~~~p~~~~~~~l-a~~~~~~g~~~~A~~~~~~al~l~P~~~ 911 (929)
|+....+++.++|.+.-.+.+ |.++..+..+++|..+++..++++-+..
T Consensus 138 ~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e~K 187 (390)
T KOG0551|consen 138 ALNDCSAALKLKPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDDEAK 187 (390)
T ss_pred HHHHHHHHHhcCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence 555555555555555544443 5555555555555555555554443333
No 262
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.02 E-value=0.029 Score=60.19 Aligned_cols=136 Identities=10% Similarity=0.031 Sum_probs=106.8
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Q 002379 642 LRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYD-TGHREEALSRAEKSISIERTFEAFFLKAYILADT 720 (929)
Q Consensus 642 ~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~-~g~~~eA~~~~~~al~~~p~~~~~~~l~~~l~~~ 720 (929)
+|..+.....+.+..+.|...|.+|++..+....+|...|.+.+. .++.+.|...|+.+++..|.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~------------- 69 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSD------------- 69 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT--------------
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCC-------------
Confidence 577777888888889999999999997777778999999999777 566666999999999988877
Q ss_pred CCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC-C----CHHHHHHHHHHHHHhCC
Q 002379 721 NLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI-K----HTRAHQGLARVYYLKNE 795 (929)
Q Consensus 721 ~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~-~----~~~a~~~la~~~~~~g~ 795 (929)
...|......+...|+.+.|...|++++.. . ....|......-...|+
T Consensus 70 ---------------------------~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gd 122 (280)
T PF05843_consen 70 ---------------------------PDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGD 122 (280)
T ss_dssp ---------------------------HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-
T ss_pred ---------------------------HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCC
Confidence 333555556677889999999999999987 2 23478888888889999
Q ss_pred HHHHHHHHHHHHHHccCCHHHH
Q 002379 796 LKAAYDEMTKLLEKAQYSASAF 817 (929)
Q Consensus 796 ~~~A~~~~~~al~~~p~~~~~~ 817 (929)
.+......+++.+..|+.....
T Consensus 123 l~~v~~v~~R~~~~~~~~~~~~ 144 (280)
T PF05843_consen 123 LESVRKVEKRAEELFPEDNSLE 144 (280)
T ss_dssp HHHHHHHHHHHHHHTTTS-HHH
T ss_pred HHHHHHHHHHHHHHhhhhhHHH
Confidence 9999999999999988865543
No 263
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.02 E-value=0.0013 Score=45.25 Aligned_cols=32 Identities=22% Similarity=0.342 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhccc
Q 002379 675 ERLVYEGWILYDTGHREEALSRAEKSISIERT 706 (929)
Q Consensus 675 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~ 706 (929)
.+|+.+|.++..+|++++|+..|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 45566666666666666666666666666664
No 264
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.00 E-value=0.0013 Score=45.10 Aligned_cols=34 Identities=26% Similarity=0.324 Sum_probs=30.2
Q ss_pred HHHHHHhhHHHHhcccHHHHHHHHHHHHhcCccc
Q 002379 419 MLALHQLGCVMFEREEYKDACYYFEAAADAGHIY 452 (929)
Q Consensus 419 a~~~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~ 452 (929)
+.+++.+|.+++..|+|++|+.+|+++++++|.+
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 4578999999999999999999999999998864
No 265
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=96.97 E-value=0.001 Score=72.89 Aligned_cols=97 Identities=22% Similarity=0.155 Sum_probs=81.2
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHh----hhCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCH
Q 002379 785 GLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS----EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKE 860 (929)
Q Consensus 785 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg----~~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~ 860 (929)
.-+...+.-+.++.|+..|.++++++|+++..+.+++ ..+++..|+....+|++.+|....+|+..|.+.+..+++
T Consensus 9 ~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~ 88 (476)
T KOG0376|consen 9 NEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEF 88 (476)
T ss_pred hHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHH
Confidence 3455667777888888888888888888888777776 568888888888889998998888888898888999999
Q ss_pred HHHHHHHHHHHhcCCCchHHH
Q 002379 861 VEAVEELSKAIAFKPDLQMLH 881 (929)
Q Consensus 861 ~eA~~~l~kal~~~p~~~~~~ 881 (929)
.+|...|++...+.|+.+.+.
T Consensus 89 ~~A~~~l~~~~~l~Pnd~~~~ 109 (476)
T KOG0376|consen 89 KKALLDLEKVKKLAPNDPDAT 109 (476)
T ss_pred HHHHHHHHHhhhcCcCcHHHH
Confidence 999999999999999887665
No 266
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.96 E-value=1.5 Score=52.72 Aligned_cols=230 Identities=14% Similarity=0.060 Sum_probs=152.9
Q ss_pred CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHHH
Q 002379 637 PGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYI 716 (929)
Q Consensus 637 p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~l~~~ 716 (929)
-+.+.+|..+|.+..+.|...+|++.|-+| ++|..|.....+..+.|.|++-+.++..+-+.......-..+..+
T Consensus 1101 ~n~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~A 1175 (1666)
T KOG0985|consen 1101 CNEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFA 1175 (1666)
T ss_pred hCChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHH
Confidence 456889999999999999999999999774 567788888999999999999999998887654443222334444
Q ss_pred HHhcCCCCCChHHHHHHHHHHhhchhccCchh-HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC
Q 002379 717 LADTNLDPESSTYVIQLLEEALRCPSDGLRKG-QALNNLGSIYVECGKLDQAENCYINALDIKHTRAHQGLARVYYLKNE 795 (929)
Q Consensus 717 l~~~~~~~~~~~~a~~~~e~Al~~~~~al~~~-~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~~~a~~~la~~~~~~g~ 795 (929)
|+..+ .+..+++-+. .|. .-.-..|.-.+..|.|+.|.-+|.. ..-|..++..+..+|+
T Consensus 1176 yAkt~--------rl~elE~fi~------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~------vSN~a~La~TLV~Lge 1235 (1666)
T KOG0985|consen 1176 YAKTN--------RLTELEEFIA------GPNVANIQQVGDRCFEEKMYEAAKLLYSN------VSNFAKLASTLVYLGE 1235 (1666)
T ss_pred HHHhc--------hHHHHHHHhc------CCCchhHHHHhHHHhhhhhhHHHHHHHHH------hhhHHHHHHHHHHHHH
Confidence 44444 0112222221 111 2245578888899999999888864 3467889999999999
Q ss_pred HHHHHHHHHHHHHHccCCHHHHHHHh----hhCCHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 002379 796 LKAAYDEMTKLLEKAQYSASAFEKRS----EYSDREMAKNDLNMATQLDP-LRTYPYRYRAAVLMDDQKEVEAVEELSKA 870 (929)
Q Consensus 796 ~~~A~~~~~~al~~~p~~~~~~~~lg----~~g~~~~A~~~~~~al~l~p-~~~~~~~~la~~~~~~g~~~eA~~~l~ka 870 (929)
++.|.+..+++ ++...|-..+ ..+++.-|. ...++- -.++-+-.+...|...|-+++-+..++.+
T Consensus 1236 yQ~AVD~aRKA-----ns~ktWK~VcfaCvd~~EFrlAQ-----iCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~ 1305 (1666)
T KOG0985|consen 1236 YQGAVDAARKA-----NSTKTWKEVCFACVDKEEFRLAQ-----ICGLNIIVHADELEELIEYYQDRGYFEELISLLEAG 1305 (1666)
T ss_pred HHHHHHHhhhc-----cchhHHHHHHHHHhchhhhhHHH-----hcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhh
Confidence 99999988776 3344554443 112222111 111111 13344566778889999999999999999
Q ss_pred HhcCCCchHHH-HHHHHHHHcCCHHHHHHHHHH
Q 002379 871 IAFKPDLQMLH-LRAAFYESIGDLTSAIRDSQA 902 (929)
Q Consensus 871 l~~~p~~~~~~-~la~~~~~~g~~~~A~~~~~~ 902 (929)
+.+...+-..+ -+|..|.+ =+.++-.++++-
T Consensus 1306 LGLERAHMgmfTELaiLYsk-ykp~km~EHl~L 1337 (1666)
T KOG0985|consen 1306 LGLERAHMGMFTELAILYSK-YKPEKMMEHLKL 1337 (1666)
T ss_pred hchhHHHHHHHHHHHHHHHh-cCHHHHHHHHHH
Confidence 88876664444 56666654 345555554443
No 267
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.95 E-value=0.026 Score=62.50 Aligned_cols=189 Identities=17% Similarity=0.131 Sum_probs=113.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhccch-HHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHH
Q 002379 681 GWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYV 759 (929)
Q Consensus 681 g~~~~~~g~~~eA~~~~~~al~~~p~~-~~~~~l~~~l~~~~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~ 759 (929)
..-..+..+.+.-++...+|++++|+. +++..++.--. ....++...+.+|++.-+..+.+ .....
T Consensus 175 Mq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEeA------~Ti~Eae~l~rqAvkAgE~~lg~-------s~~~~ 241 (539)
T PF04184_consen 175 MQKAWRERNPQARIKAAKEALEINPDCADAYILLAEEEA------STIVEAEELLRQAVKAGEASLGK-------SQFLQ 241 (539)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccccc------cCHHHHHHHHHHHHHHHHHhhch-------hhhhh
Confidence 333456677888899999999999999 77766654322 22333344444444422222221 11111
Q ss_pred HcCCHHHHHHHHHHHHcCC----CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHhhhCCHHHHHHHHHH
Q 002379 760 ECGKLDQAENCYINALDIK----HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNM 835 (929)
Q Consensus 760 ~~g~~~eA~~~~~~al~~~----~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~g~~~~A~~~~~~ 835 (929)
..|..-+ ..... ...+...+|.+..++|+.++|++.++.+++..|..
T Consensus 242 ~~g~~~e-------~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~---------------------- 292 (539)
T PF04184_consen 242 HHGHFWE-------AWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNL---------------------- 292 (539)
T ss_pred cccchhh-------hhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCcc----------------------
Confidence 1111111 11111 13466778999999999999999998888876642
Q ss_pred HHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCchHHH-HHHHHHHH-cCC---------------HHHHH
Q 002379 836 ATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAF-KPDLQMLH-LRAAFYES-IGD---------------LTSAI 897 (929)
Q Consensus 836 al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~-~p~~~~~~-~la~~~~~-~g~---------------~~~A~ 897 (929)
++..++.++..+++..+.|.++...+.+.=++ -|+...+. ..|..-.+ .|| -..|.
T Consensus 293 ------~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~av 366 (539)
T PF04184_consen 293 ------DNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAV 366 (539)
T ss_pred ------chhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHH
Confidence 12335667788888999999998888886433 24444433 22222211 122 23578
Q ss_pred HHHHHHhccCCCCHHHHHHH
Q 002379 898 RDSQAALCLDPNHMETLDLY 917 (929)
Q Consensus 898 ~~~~~al~l~P~~~~a~~~~ 917 (929)
+...+|++.+|.-+..+.-.
T Consensus 367 eAi~RAvefNPHVp~YLLe~ 386 (539)
T PF04184_consen 367 EAIHRAVEFNPHVPKYLLEM 386 (539)
T ss_pred HHHHHHHHhCCCCchhhhcc
Confidence 99999999999988755433
No 268
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.89 E-value=0.003 Score=62.73 Aligned_cols=79 Identities=14% Similarity=0.120 Sum_probs=75.6
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 002379 626 LAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIE 704 (929)
Q Consensus 626 l~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~ 704 (929)
+.+|.+++.++|..+..|.+.+.+++++++++.+....+++++++|+....++.+|........|++|+..+.++..+.
T Consensus 30 i~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~ 108 (284)
T KOG4642|consen 30 IDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLL 108 (284)
T ss_pred HHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHH
Confidence 7788999999999999999999999999999999999999999999999999999999999999999999999997654
No 269
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=96.87 E-value=0.002 Score=44.12 Aligned_cols=32 Identities=31% Similarity=0.493 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhccc
Q 002379 675 ERLVYEGWILYDTGHREEALSRAEKSISIERT 706 (929)
Q Consensus 675 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~ 706 (929)
.+++.+|.+++..|++++|+..|+++++++|+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 45566666666666666666666666666664
No 270
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=96.85 E-value=0.0039 Score=47.44 Aligned_cols=48 Identities=21% Similarity=0.209 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHhhhhh
Q 002379 879 MLHLRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNRARDQASH 926 (929)
Q Consensus 879 ~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~l~~~~~~ 926 (929)
.+|.+|..+.++|++++|..+.+.+|+++|+|.++..+...|+....+
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~~i~k 50 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIEDKIQK 50 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhc
Confidence 467889999999999999999999999999999999999999877654
No 271
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.82 E-value=0.014 Score=60.90 Aligned_cols=107 Identities=16% Similarity=0.053 Sum_probs=84.2
Q ss_pred HHHHHHHHHHhhHHHHhcccHHHHHHHHHHHHhcCccccHHHHHHHHHHhchHHHHHHHHHhhhccCCCchhhhHHHHHH
Q 002379 415 RWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGHIYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLY 494 (929)
Q Consensus 415 ~~~~a~~~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~~~a~la~~~~~~g~a~~a~~~~~~~~~~~~~~~~~~~~~~l~ 494 (929)
+...|.-|-.-|+-|++.++|..|+..|.+.|+..-.... ..+.+|.++..+...++
T Consensus 77 p~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~d-lnavLY~NRAAa~~~l~---------------------- 133 (390)
T KOG0551|consen 77 PHEQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPD-LNAVLYTNRAAAQLYLG---------------------- 133 (390)
T ss_pred hHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCcc-HHHHHHhhHHHHHHHHH----------------------
Confidence 3457888889999999999999999999999998322211 12345666555544444
Q ss_pred hhhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhccc
Q 002379 495 NLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFK 545 (929)
Q Consensus 495 ~~~~~Ai~~~~kal~l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~ 545 (929)
.++.++.+..+++.++|++..+++.-|.+++.++.+.+|...++..+.+.
T Consensus 134 -NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d 183 (390)
T KOG0551|consen 134 -NYRSALNDCSAALKLKPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQID 183 (390)
T ss_pred -HHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhh
Confidence 66688899999999999999999999999999999999999998887544
No 272
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.81 E-value=0.5 Score=55.94 Aligned_cols=172 Identities=15% Similarity=0.049 Sum_probs=110.9
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHh-----CCHHHHHHHHHHHhcc------cCCHhHHHHHHHHHHHh----c-
Q 002379 499 EKIVDLNYASELDPTLSFPYKYRAVAKMEE-----GQIRAAISEIDRIIVF------KLSVDCLELRAWLFIAA----D- 562 (929)
Q Consensus 499 ~Ai~~~~kal~l~P~~~~a~~~~a~~~~~~-----g~~~~A~~~~~~al~~------~~~~~~~~~~a~~~~~~----g- 562 (929)
++...++.+.+. .+..+...+|.++..- .|.+.|+.+|+.+... ...+...+.+|.+|.+- .
T Consensus 230 ~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~ 307 (552)
T KOG1550|consen 230 EAFKYYREAAKL--GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKI 307 (552)
T ss_pred HHHHHHHHHHhh--cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccc
Confidence 566666666544 4567777778777654 6889999999988751 11455677788888773 3
Q ss_pred cHHHHHHHHHHHHhhcCCchhhhccccHHHHHHHHHHhhc---ccchHHHHHHhhhccccccccccHHHHHHHHhcCCCC
Q 002379 563 DYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVR---SWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGK 639 (929)
Q Consensus 563 ~~~~A~~~~~~al~~~p~~~~~~~~~~a~~ll~~~~~~~~---~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~~p~~ 639 (929)
++..|+..|.++-..... .+.+.+|.++..-. +..+|..++ ..+.. -.+
T Consensus 308 d~~~A~~~~~~aA~~g~~--------~a~~~lg~~~~~g~~~~d~~~A~~yy------------------~~Aa~--~G~ 359 (552)
T KOG1550|consen 308 DYEKALKLYTKAAELGNP--------DAQYLLGVLYETGTKERDYRRAFEYY------------------SLAAK--AGH 359 (552)
T ss_pred cHHHHHHHHHHHHhcCCc--------hHHHHHHHHHHcCCccccHHHHHHHH------------------HHHHH--cCC
Confidence 778899999888776433 44566777765433 334554444 44443 346
Q ss_pred hHHHHHHHHHHHH----hcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHc-CCHHHHHHHHHHHHh
Q 002379 640 SFLRFRQSLLLLR----LNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDT-GHREEALSRAEKSIS 702 (929)
Q Consensus 640 ~~~~~~lg~~~~~----~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~-g~~~eA~~~~~~al~ 702 (929)
..+.+.++.+|.. ..+...|..++.++.+.+ .+.+...++..+... +.++.+...+....+
T Consensus 360 ~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~ 425 (552)
T KOG1550|consen 360 ILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLYLAE 425 (552)
T ss_pred hHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHHHHH
Confidence 6777777777765 246788888888888877 344555555544333 666666665554443
No 273
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.77 E-value=0.00085 Score=70.11 Aligned_cols=86 Identities=24% Similarity=0.230 Sum_probs=63.0
Q ss_pred hCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHH-HHHHHHHHcCCHHHHHHHHH
Q 002379 823 YSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLH-LRAAFYESIGDLTSAIRDSQ 901 (929)
Q Consensus 823 ~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~-~la~~~~~~g~~~~A~~~~~ 901 (929)
.|.++.|++.|..+++++|.....+..++.++++++++..|+..+..+++++|+...-| .++.....+|++++|..+++
T Consensus 127 ~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~ 206 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLA 206 (377)
T ss_pred CcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHH
Confidence 35567777777777777777777777777777777777777777777777777776544 66777777777777777777
Q ss_pred HHhccCC
Q 002379 902 AALCLDP 908 (929)
Q Consensus 902 ~al~l~P 908 (929)
.+.+++-
T Consensus 207 ~a~kld~ 213 (377)
T KOG1308|consen 207 LACKLDY 213 (377)
T ss_pred HHHhccc
Confidence 7777654
No 274
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=96.76 E-value=1.4 Score=49.51 Aligned_cols=394 Identities=12% Similarity=0.000 Sum_probs=221.7
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccCCHhHHHHHH-HHHHHhccHHHH----HHHHHH
Q 002379 499 EKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRA-WLFIAADDYESA----LRDTLA 573 (929)
Q Consensus 499 ~Ai~~~~kal~l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a-~~~~~~g~~~~A----~~~~~~ 573 (929)
+....|++.+...|..+.+|.......+..++|+.-...|.+.+....+.+.|...- .+....++...+ ...|+-
T Consensus 37 ~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f 116 (656)
T KOG1914|consen 37 KVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLWKLYLSYVRETKGKLFGYREKMVQAYDF 116 (656)
T ss_pred HHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHccCcchHHHHHHHHHHH
Confidence 788899999999999999999999999999999999999999985555555544322 222233333332 333444
Q ss_pred HHhhcCCchhhhccccHHHHHHHHH---HhhcccchHHHHHHhhhcccccccccc-HHHHHHHHhcCCCChH-HHH----
Q 002379 574 LLALESNYMMFHGRVSGDHLVKLLN---HHVRSWSPADCWIKLYDRWSSVDDIGS-LAVINQMLINDPGKSF-LRF---- 644 (929)
Q Consensus 574 al~~~p~~~~~~~~~~a~~ll~~~~---~~~~~~~~A~~~l~l~~~~~~~~~~~~-l~~~~~al~~~p~~~~-~~~---- 644 (929)
++...--+...+ ..+.-..... ...|.|++-. .+.+ -..|++++..--.+.+ .|.
T Consensus 117 ~l~kig~di~s~---siW~eYi~FL~~vea~gk~ee~Q-------------RI~~vRriYqral~tPm~nlEkLW~DY~~ 180 (656)
T KOG1914|consen 117 ALEKIGMDIKSY---SIWDEYINFLEGVEAVGKYEENQ-------------RITAVRRIYQRALVTPMHNLEKLWKDYEA 180 (656)
T ss_pred HHHHhccCcccc---hhHHHHHHHHHcccccccHHHHH-------------HHHHHHHHHHHHhcCccccHHHHHHHHHH
Confidence 443322111000 1111111111 2223333221 0111 2234444443222211 111
Q ss_pred ---------HHHHHHHHhcCHHHHHHHHHHHHhc-------CCc----h-------HHHHHHHHHHHHHcC------CH-
Q 002379 645 ---------RQSLLLLRLNCQKAAMRCLRLARNH-------SSS----E-------HERLVYEGWILYDTG------HR- 690 (929)
Q Consensus 645 ---------~lg~~~~~~g~~~~A~~~l~~al~~-------~p~----~-------~~~~~~lg~~~~~~g------~~- 690 (929)
..-.+-.+...|-.|.+.+++...+ +|. . .+.|.++-..-...+ ..
T Consensus 181 fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~ 260 (656)
T KOG1914|consen 181 FEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRTLDGTML 260 (656)
T ss_pred HHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcccccccHH
Confidence 1112223344566666666665432 111 0 122333222211111 11
Q ss_pred -HHHHHHHHHHHhhccch-HHHHHHHHHHHhcC---CCCCChHHHHHHHHHHhhchhccCchh-----HHHHHHHHHHHH
Q 002379 691 -EEALSRAEKSISIERTF-EAFFLKAYILADTN---LDPESSTYVIQLLEEALRCPSDGLRKG-----QALNNLGSIYVE 760 (929)
Q Consensus 691 -~eA~~~~~~al~~~p~~-~~~~~l~~~l~~~~---~~~~~~~~a~~~~e~Al~~~~~al~~~-----~a~~~lg~~~~~ 760 (929)
..-.-.|++++..-+-. +.|+..+..+...+ ...++...+...-+++..+|++++... ..++.++..-..
T Consensus 261 ~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~ 340 (656)
T KOG1914|consen 261 TRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEES 340 (656)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 11122355665554444 55655544443332 122233333344566666666665421 223333322222
Q ss_pred c---CCHHHHHHHHHHHHcC---CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHh-----hhCCHHHH
Q 002379 761 C---GKLDQAENCYINALDI---KHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS-----EYSDREMA 829 (929)
Q Consensus 761 ~---g~~~eA~~~~~~al~~---~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg-----~~g~~~~A 829 (929)
. ++++.-...+++.+.+ +++-++..+-+.-.+..-...|...|.++-+..-....++..-+ -.++..-|
T Consensus 341 ~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~A 420 (656)
T KOG1914|consen 341 RYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETA 420 (656)
T ss_pred hcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHH
Confidence 2 2366667778888877 45557777777766777788899999998776544444444444 46899999
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCch-HHH-HHHHHHHHcCCHHHHHHHHHHHhc
Q 002379 830 KNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAF--KPDLQ-MLH-LRAAFYESIGDLTSAIRDSQAALC 905 (929)
Q Consensus 830 ~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~--~p~~~-~~~-~la~~~~~~g~~~~A~~~~~~al~ 905 (929)
...|+-.++..++.+..-......+...++-..|...|++++.. .|+-. ..+ ..-..-..-||...+++.=++-..
T Consensus 421 frIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 421 FRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 99999999999999998888888999999999999999999987 33322 333 334445557888888877766665
Q ss_pred cCC
Q 002379 906 LDP 908 (929)
Q Consensus 906 l~P 908 (929)
..|
T Consensus 501 af~ 503 (656)
T KOG1914|consen 501 AFP 503 (656)
T ss_pred hcc
Confidence 555
No 275
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=96.75 E-value=1.3 Score=52.96 Aligned_cols=293 Identities=17% Similarity=0.081 Sum_probs=166.2
Q ss_pred CCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccCCHhHHHHHHHHHHHhccHHHHHHHHHHHHhhcCCchhhhccccHH
Q 002379 512 PTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGD 591 (929)
Q Consensus 512 P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~ 591 (929)
|.....+..-+..+...|...+|+...-++-+-..-.+.+...++-....++..- +...++.-|....... -...
T Consensus 344 ~~~~~lH~~Aa~w~~~~g~~~eAI~hAlaA~d~~~aa~lle~~~~~L~~~~~lsl----l~~~~~~lP~~~l~~~-P~Lv 418 (894)
T COG2909 344 ARLKELHRAAAEWFAEHGLPSEAIDHALAAGDPEMAADLLEQLEWQLFNGSELSL----LLAWLKALPAELLAST-PRLV 418 (894)
T ss_pred CchhHHHHHHHHHHHhCCChHHHHHHHHhCCCHHHHHHHHHhhhhhhhcccchHH----HHHHHHhCCHHHHhhC-chHH
Confidence 3345666777777888888888887666553111122333334444444444332 2333333333331111 0222
Q ss_pred HHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcC--CC-------ChHHHHHHHHHHHHhcCHHHHHHH
Q 002379 592 HLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLIND--PG-------KSFLRFRQSLLLLRLNCQKAAMRC 662 (929)
Q Consensus 592 ~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~~--p~-------~~~~~~~lg~~~~~~g~~~~A~~~ 662 (929)
.+.+.......++++|...+ .++...- |. .+...-..|.+....|++++|++.
T Consensus 419 ll~aW~~~s~~r~~ea~~li------------------~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~l 480 (894)
T COG2909 419 LLQAWLLASQHRLAEAETLI------------------ARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDL 480 (894)
T ss_pred HHHHHHHHHccChHHHHHHH------------------HHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 33344445566777776555 2222111 11 123445677888899999999999
Q ss_pred HHHHHhcCCch-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHH-------HHHHHHhcCCCCCChHHH
Q 002379 663 LRLARNHSSSE-----HERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFL-------KAYILADTNLDPESSTYV 730 (929)
Q Consensus 663 l~~al~~~p~~-----~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~-------l~~~l~~~~~~~~~~~~a 730 (929)
.+.++..-|.+ ...+..+|.+..-.|++++|..+..++.+.....+.++. .+.++...| ..
T Consensus 481 ar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qG------q~- 553 (894)
T COG2909 481 ARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQG------QV- 553 (894)
T ss_pred HHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhh------HH-
Confidence 99999887765 345677899999999999999999999988655522222 223333333 11
Q ss_pred HHHHHHHhhchhcc----C-c---hhHHHHHHHHHHHHcCCHHHHHHHHHHHHcCC-----CH----HHHHHHHHHHHHh
Q 002379 731 IQLLEEALRCPSDG----L-R---KGQALNNLGSIYVECGKLDQAENCYINALDIK-----HT----RAHQGLARVYYLK 793 (929)
Q Consensus 731 ~~~~e~Al~~~~~a----l-~---~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~-----~~----~a~~~la~~~~~~ 793 (929)
.+.+....+... + + .+......+.++...-+++.+.......++.. ++ -+...++.+++..
T Consensus 554 --~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~ 631 (894)
T COG2909 554 --ARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLR 631 (894)
T ss_pred --HHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhc
Confidence 111111111111 0 0 11222333333333334777777766666661 11 1345899999999
Q ss_pred CCHHHHHHHHHHHHHHccCC-HHH-HHHHh---------hhCCHHHHHHHHHHH
Q 002379 794 NELKAAYDEMTKLLEKAQYS-ASA-FEKRS---------EYSDREMAKNDLNMA 836 (929)
Q Consensus 794 g~~~~A~~~~~~al~~~p~~-~~~-~~~lg---------~~g~~~~A~~~~~~a 836 (929)
|+.++|...+.+......+. ... |.... ..|+.++|.....+.
T Consensus 632 Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~s 685 (894)
T COG2909 632 GDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLKS 685 (894)
T ss_pred CCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHhc
Confidence 99999999998887665444 111 11111 458888888877773
No 276
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.72 E-value=0.4 Score=55.39 Aligned_cols=120 Identities=16% Similarity=0.075 Sum_probs=92.1
Q ss_pred cCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHHHHHhcCCCCCChHHHHHH
Q 002379 654 NCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQL 733 (929)
Q Consensus 654 g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~l~~~l~~~~~~~~~~~~a~~~ 733 (929)
...+.|.+.++...+..|+..-.++..|.++...|+.++|++.|++++....+. . +
T Consensus 247 ~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~---~---------------------Q 302 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEW---K---------------------Q 302 (468)
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhH---H---------------------h
Confidence 456778888888888889888888888999999999999999998887533322 0 0
Q ss_pred HHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHHhCCH-------HHHHHHH
Q 002379 734 LEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIK---HTRAHQGLARVYYLKNEL-------KAAYDEM 803 (929)
Q Consensus 734 ~e~Al~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~---~~~a~~~la~~~~~~g~~-------~~A~~~~ 803 (929)
+ ..-.++.+|.++..+.+|++|..+|.+..+.+ +.-..+..|.++...|+. ++|.+.+
T Consensus 303 l------------~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~ 370 (468)
T PF10300_consen 303 L------------HHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELF 370 (468)
T ss_pred H------------HHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHH
Confidence 0 02347889999999999999999999999873 334667788899999988 6666666
Q ss_pred HHHHHH
Q 002379 804 TKLLEK 809 (929)
Q Consensus 804 ~~al~~ 809 (929)
.++-..
T Consensus 371 ~~vp~l 376 (468)
T PF10300_consen 371 RKVPKL 376 (468)
T ss_pred HHHHHH
Confidence 666544
No 277
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.71 E-value=0.081 Score=57.92 Aligned_cols=190 Identities=15% Similarity=0.106 Sum_probs=123.2
Q ss_pred ChHHHHHHHHHHHHhcCHHHHHHHHHHHHhc----CCchHHHHHHHHHHHHH---cCCHHHHHHHHHHHHhhccc-h-HH
Q 002379 639 KSFLRFRQSLLLLRLNCQKAAMRCLRLARNH----SSSEHERLVYEGWILYD---TGHREEALSRAEKSISIERT-F-EA 709 (929)
Q Consensus 639 ~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~----~p~~~~~~~~lg~~~~~---~g~~~eA~~~~~~al~~~p~-~-~~ 709 (929)
.+....++-..|....+|+.-++..+..-.+ -++.+.+...+|.++.+ .|+.++|+..+..++..... + +.
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 3455667777899999999999888887666 45567788899999999 99999999999996654433 3 66
Q ss_pred HHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcCC-CHHHHHHHHH
Q 002379 710 FFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIK-HTRAHQGLAR 788 (929)
Q Consensus 710 ~~~l~~~l~~~~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~-~~~a~~~la~ 788 (929)
+...|.++.+.-... -+......++|+.+|.++.+++ +...-.|++.
T Consensus 220 ~gL~GRIyKD~~~~s--------------------------------~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~At 267 (374)
T PF13281_consen 220 LGLLGRIYKDLFLES--------------------------------NFTDRESLDKAIEWYRKGFEIEPDYYSGINAAT 267 (374)
T ss_pred HHHHHHHHHHHHHHc--------------------------------CccchHHHHHHHHHHHHHHcCCccccchHHHHH
Confidence 777776665442000 0011223789999999999985 3345567777
Q ss_pred HHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHhhhCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHH
Q 002379 789 VYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELS 868 (929)
Q Consensus 789 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~ 868 (929)
++...|...+.....++..-. .-..+|..|..+ .-.+...+-.++.+..-.|++++|++.++
T Consensus 268 LL~~~g~~~~~~~el~~i~~~------l~~llg~kg~~~------------~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e 329 (374)
T PF13281_consen 268 LLMLAGHDFETSEELRKIGVK------LSSLLGRKGSLE------------KMQDYWDVATLLEASVLAGDYEKAIQAAE 329 (374)
T ss_pred HHHHcCCcccchHHHHHHHHH------HHHHHHhhcccc------------ccccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 777778755444433333211 000111111111 11233334456667778899999999999
Q ss_pred HHHhcCCCch
Q 002379 869 KAIAFKPDLQ 878 (929)
Q Consensus 869 kal~~~p~~~ 878 (929)
+++++.|...
T Consensus 330 ~~~~l~~~~W 339 (374)
T PF13281_consen 330 KAFKLKPPAW 339 (374)
T ss_pred HHhhcCCcch
Confidence 9998876654
No 278
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.70 E-value=1.4 Score=50.29 Aligned_cols=104 Identities=16% Similarity=-0.001 Sum_probs=84.3
Q ss_pred hhCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCchHHHHH-HHHHHHcCCHHHHHHH
Q 002379 822 EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFK-PDLQMLHLR-AAFYESIGDLTSAIRD 899 (929)
Q Consensus 822 ~~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~-p~~~~~~~l-a~~~~~~g~~~~A~~~ 899 (929)
..|+++...-.|++++---....+.|...+......|+.+-|-..+..+.++. |+.+..+++ +.+-...|++..|...
T Consensus 309 ~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~ 388 (577)
T KOG1258|consen 309 TLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVI 388 (577)
T ss_pred hcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHH
Confidence 56888888888988887666788899999998888899999998888887764 555667765 8888889999999999
Q ss_pred HHHHhccCCCCHHHHHHHHHHHhhhh
Q 002379 900 SQAALCLDPNHMETLDLYNRARDQAS 925 (929)
Q Consensus 900 ~~~al~l~P~~~~a~~~~~~l~~~~~ 925 (929)
+++..+-.|+..++-....-+....+
T Consensus 389 lq~i~~e~pg~v~~~l~~~~~e~r~~ 414 (577)
T KOG1258|consen 389 LQRIESEYPGLVEVVLRKINWERRKG 414 (577)
T ss_pred HHHHHhhCCchhhhHHHHHhHHHHhc
Confidence 99999888998887666655554443
No 279
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=96.69 E-value=0.021 Score=51.75 Aligned_cols=84 Identities=18% Similarity=0.184 Sum_probs=71.4
Q ss_pred CcHHHHHHHHHHHhcC---CHHHHHHHHHHHHh-cCCCc--hHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHH
Q 002379 843 RTYPYRYRAAVLMDDQ---KEVEAVEELSKAIA-FKPDL--QMLHLRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDL 916 (929)
Q Consensus 843 ~~~~~~~la~~~~~~g---~~~eA~~~l~kal~-~~p~~--~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~ 916 (929)
.....+++|+++.... +..+.+..++..++ -.|.. ...|++|..+.+.|+|+.|+.+.+..++.+|+|.++..+
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L 110 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL 110 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 4567788999998765 56778999999997 44544 467799999999999999999999999999999999999
Q ss_pred HHHHHhhhhh
Q 002379 917 YNRARDQASH 926 (929)
Q Consensus 917 ~~~l~~~~~~ 926 (929)
...|+...++
T Consensus 111 k~~ied~itk 120 (149)
T KOG3364|consen 111 KETIEDKITK 120 (149)
T ss_pred HHHHHHHHhh
Confidence 9999877654
No 280
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.63 E-value=0.99 Score=46.10 Aligned_cols=220 Identities=15% Similarity=0.071 Sum_probs=135.8
Q ss_pred ccHHHHHHHHHHHHhcCccccHHHHHHHHHHhchHHHHHHHHHhhhccCCCchhhhHHHHHHhhhh---HHHHHHHHHHh
Q 002379 433 EEYKDACYYFEAAADAGHIYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNLGR---EKIVDLNYASE 509 (929)
Q Consensus 433 g~y~~A~~~f~~al~~~~~~~~a~la~~~~~~g~a~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~Ai~~~~kal~ 509 (929)
.+|.++..+|+..+..+..... +....+.++.+.|. ....|.++..++-..+. +-+..+++.++
T Consensus 40 e~fr~~m~YfRAI~~~~E~S~R------------Al~LT~d~i~lNpA-nYTVW~yRr~iL~~l~~dL~~El~~l~eI~e 106 (318)
T KOG0530|consen 40 EDFRDVMDYFRAIIAKNEKSPR------------ALQLTEDAIRLNPA-NYTVWQYRRVILRHLMSDLNKELEYLDEIIE 106 (318)
T ss_pred hhHHHHHHHHHHHHhccccCHH------------HHHHHHHHHHhCcc-cchHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3566666666665555443332 12222223333333 34456665555544433 77889999999
Q ss_pred cCCCChHHHHHHHHHHHHhCCHH-HHHHHHHHHhcccC-CHhHHHHHHHHHHHhccHHHHHHHHHHHHhhcCCch-hhhc
Q 002379 510 LDPTLSFPYKYRAVAKMEEGQIR-AAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLALLALESNYM-MFHG 586 (929)
Q Consensus 510 l~P~~~~a~~~~a~~~~~~g~~~-~A~~~~~~al~~~~-~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~ 586 (929)
-+|++...|..+-.+....|+.. .-+...+.++..+. +-.++..+-|+....+.++.-+.+..+.++.+-.+. .|..
T Consensus 107 ~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~ 186 (318)
T KOG0530|consen 107 DNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQ 186 (318)
T ss_pred hCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhhe
Confidence 99999999999999999999888 77888888886554 556688889999999999999999999998876555 2322
Q ss_pred cccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHHHH-hc--CHHHHHHHH
Q 002379 587 RVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLR-LN--CQKAAMRCL 663 (929)
Q Consensus 587 ~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~lg~~~~~-~g--~~~~A~~~l 663 (929)
+.-.. . ...|-.+++.- ...+....+.+...|++..+|..+.-++.. .| .+.+-....
T Consensus 187 Ryfvi---~---~~~~~~~~~~l-------------e~El~yt~~~I~~vP~NeSaWnYL~G~l~~d~gl~s~s~vv~f~ 247 (318)
T KOG0530|consen 187 RYFVI---T---NTKGVISKAEL-------------ERELNYTKDKILLVPNNESAWNYLKGLLELDSGLSSDSKVVSFV 247 (318)
T ss_pred eeEEE---E---eccCCccHHHH-------------HHHHHHHHHHHHhCCCCccHHHHHHHHHHhccCCcCCchHHHHH
Confidence 10000 0 00111111100 001444478888999999999988888775 44 233333333
Q ss_pred HHHH-hcCCchHHHHHHHHHHH
Q 002379 664 RLAR-NHSSSEHERLVYEGWIL 684 (929)
Q Consensus 664 ~~al-~~~p~~~~~~~~lg~~~ 684 (929)
.... ......|..+--+..+|
T Consensus 248 ~~l~~~~~~~sP~lla~l~d~~ 269 (318)
T KOG0530|consen 248 ENLYLQLPKRSPFLLAFLLDLY 269 (318)
T ss_pred HHHhhccCCCChhHHHHHHHHH
Confidence 3333 33334455555555555
No 281
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.62 E-value=1.9 Score=49.31 Aligned_cols=176 Identities=12% Similarity=-0.104 Sum_probs=134.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccC-CHHHHHHHh----
Q 002379 749 QALNNLGSIYVECGKLDQAENCYINALDI--KHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQY-SASAFEKRS---- 821 (929)
Q Consensus 749 ~a~~~lg~~~~~~g~~~eA~~~~~~al~~--~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg---- 821 (929)
..|..........|+++...-.|++++-- .....|...++-....|+.+-|...+.++.+..-. .+.....-+
T Consensus 298 ~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e 377 (577)
T KOG1258|consen 298 KNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEE 377 (577)
T ss_pred HHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHH
Confidence 55677777778899999999999999876 67789999999999999999999888888876543 333333333
Q ss_pred hhCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHH---HHHHHHHhcCCCch---HHH-HHHHH-HHHcCCH
Q 002379 822 EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAV---EELSKAIAFKPDLQ---MLH-LRAAF-YESIGDL 893 (929)
Q Consensus 822 ~~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~---~~l~kal~~~p~~~---~~~-~la~~-~~~~g~~ 893 (929)
..|++..|...+++..+--|....+-...+......|+.+.+. +.+.....-..+.. .++ ..+.. +.-.++.
T Consensus 378 ~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~ 457 (577)
T KOG1258|consen 378 SNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDA 457 (577)
T ss_pred hhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCH
Confidence 5689999999999999877988888888888889999999888 44444433332322 122 22333 3347899
Q ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHhhh
Q 002379 894 TSAIRDSQAALCLDPNHMETLDLYNRARDQA 924 (929)
Q Consensus 894 ~~A~~~~~~al~l~P~~~~a~~~~~~l~~~~ 924 (929)
+.|...+.+++...|.+...+.-+.++....
T Consensus 458 ~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~ 488 (577)
T KOG1258|consen 458 DLARIILLEANDILPDCKVLYLELIRFELIQ 488 (577)
T ss_pred HHHHHHHHHhhhcCCccHHHHHHHHHHHHhC
Confidence 9999999999999999999888877776543
No 282
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=96.56 E-value=0.0038 Score=65.56 Aligned_cols=114 Identities=16% Similarity=0.133 Sum_probs=86.5
Q ss_pred eEEEeehhHHhccCHHHHHHhcCCCCcC-CCCeeEecCCCCCHHHHHHHhhhHccCCCCCCChhHHHHHHHHhchhChHh
Q 002379 227 KEISFVRNKIASLSSPFKAMLYGGFVES-KRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFCPGIVLELLSFANRFCCEE 305 (929)
Q Consensus 227 ~~~~~hr~iLaa~S~~F~~mf~~~~~e~-~~~~i~~~~~~~~~~~~~~~l~~~Yt~~~~~~~~~~~~~ll~~A~~~~~~~ 305 (929)
+.|.|.+-.|-..-.||+..+.....++ ..+.|+|+ -.-+-.+|.=+++|+....-. ++++||..||.-|++++|++
T Consensus 14 rdF~C~~~lL~~~M~YF~~~l~~~~~~~~~~~~idis-VhCDv~iF~WLm~yv~~~~p~-l~~~NvvsIliSS~FL~M~~ 91 (317)
T PF11822_consen 14 RDFTCPRDLLVSEMRYFAEYLSRYINDSQRWEEIDIS-VHCDVHIFEWLMRYVKGEPPS-LTPSNVVSILISSEFLQMES 91 (317)
T ss_pred eeeeccHHHHHHhhHHHHHHHhhcccccCcCCCcceE-EecChhHHHHHHHHhhcCCCc-CCcCcEEEeEehhhhhccHH
Confidence 6799999999999999999997633332 23457774 356789999999999986665 99999999999999999999
Q ss_pred HHHHHHHHHHhhcCC---------hhhHHHHHHHHHHhChHHHHHH
Q 002379 306 MKSACDAHLASLVGD---------IEDALILIDYGLEERATLLVAS 342 (929)
Q Consensus 306 l~~~C~~~l~~~~~~---------~~n~~~~~~~a~~~~~~~L~~~ 342 (929)
|.+.|-.|+.+.++. .=|--.+..+|..++..+|..+
T Consensus 92 Lve~cl~y~~~~~~~Iv~~~~nl~Cl~~~Ll~RLa~~~t~~el~~~ 137 (317)
T PF11822_consen 92 LVEECLQYCHDHMSEIVASPCNLNCLNDNLLTRLADMFTHEELEAA 137 (317)
T ss_pred HHHHHHHHHHHhHHHHHcCCCCcccCCHHHHHHHHHhcCcccHhHh
Confidence 999999999776651 0112234455555555555553
No 283
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.48 E-value=0.11 Score=54.14 Aligned_cols=158 Identities=15% Similarity=0.029 Sum_probs=97.5
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhcccC-CHhHHHHHHHHHHHhccHHHHHHHHHHHHhhcCCchhhhccccHHHHHHH
Q 002379 518 YKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKL 596 (929)
Q Consensus 518 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~ll~~ 596 (929)
-+..+.-....|++.+|...|..++...+ +.+....++.++...|+.+.|...+...-....+.. + ..+.+.
T Consensus 137 ~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~-~------~~l~a~ 209 (304)
T COG3118 137 ALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKA-A------HGLQAQ 209 (304)
T ss_pred HHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhH-H------HHHHHH
Confidence 34455666777888888888888877766 666677778888888888777766654322221111 0 000000
Q ss_pred HHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc--hH
Q 002379 597 LNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSS--EH 674 (929)
Q Consensus 597 ~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~--~~ 674 (929)
+. ...+| .....+..+++.+..+|++..+.+.++..+...|++++|.+.+-..++.+.. +.
T Consensus 210 i~----ll~qa-------------a~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~ 272 (304)
T COG3118 210 IE----LLEQA-------------AATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDG 272 (304)
T ss_pred HH----HHHHH-------------hcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCc
Confidence 00 00000 1112234457888889999999999999999999999999988888876543 34
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHH
Q 002379 675 ERLVYEGWILYDTGHREEALSRAEK 699 (929)
Q Consensus 675 ~~~~~lg~~~~~~g~~~eA~~~~~~ 699 (929)
.+...+-.++...|.-+.+...|++
T Consensus 273 ~~Rk~lle~f~~~g~~Dp~~~~~RR 297 (304)
T COG3118 273 EARKTLLELFEAFGPADPLVLAYRR 297 (304)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 4555555555555544444444443
No 284
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.48 E-value=0.0049 Score=64.63 Aligned_cols=98 Identities=17% Similarity=0.207 Sum_probs=76.0
Q ss_pred hhHHHHhcccHHHHHHHHHHHHhcCccccHHHHHHHHHHhchHHHHHHHHHhhhccCCCchhhhHHHHHHhhhhHHHHHH
Q 002379 425 LGCVMFEREEYKDACYYFEAAADAGHIYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNLGREKIVDL 504 (929)
Q Consensus 425 lG~~~~~~g~y~~A~~~f~~al~~~~~~~~a~la~~~~~~g~a~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Ai~~~ 504 (929)
.+.-.+..|+++.|+..|..+++++|.... .|.+++.+...++ ....|+.++
T Consensus 120 ~A~eAln~G~~~~ai~~~t~ai~lnp~~a~-----l~~kr~sv~lkl~-----------------------kp~~airD~ 171 (377)
T KOG1308|consen 120 QASEALNDGEFDTAIELFTSAIELNPPLAI-----LYAKRASVFLKLK-----------------------KPNAAIRDC 171 (377)
T ss_pred HHHHHhcCcchhhhhcccccccccCCchhh-----hcccccceeeecc-----------------------CCchhhhhh
Confidence 344567788899999999999999888765 5555554433333 333788899
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccCCHhH
Q 002379 505 NYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDC 550 (929)
Q Consensus 505 ~kal~l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~ 550 (929)
..|++++|+.+..|..+|.+...+|++++|...+..+.+++-++..
T Consensus 172 d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kld~dE~~ 217 (377)
T KOG1308|consen 172 DFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLALACKLDYDEAN 217 (377)
T ss_pred hhhhccCcccccccchhhHHHHHhhchHHHHHHHHHHHhccccHHH
Confidence 9999999999999999999999999999999999998876654444
No 285
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=96.47 E-value=3 Score=55.00 Aligned_cols=104 Identities=16% Similarity=0.088 Sum_probs=82.1
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCC--------HH----
Q 002379 748 GQALNNLGSIYVECGKLDQAENCYINALDIKHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYS--------AS---- 815 (929)
Q Consensus 748 ~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--------~~---- 815 (929)
++.|.+.|.+....|+++.|..+.-+|.+...+.++...|..+...|+-..|+..+++.++.+-.+ +.
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~ 1749 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESRLPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNL 1749 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhcccchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhh
Confidence 688999999999999999999999999999999999999999999999999999999999664222 11
Q ss_pred -----HHHHHh----hhCCH--HHHHHHHHHHHhcCCCCcHHHHHHH
Q 002379 816 -----AFEKRS----EYSDR--EMAKNDLNMATQLDPLRTYPYRYRA 851 (929)
Q Consensus 816 -----~~~~lg----~~g~~--~~A~~~~~~al~l~p~~~~~~~~la 851 (929)
+....+ +.+++ .+-+..|..+.+..|.....++.+|
T Consensus 1750 ~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~ 1796 (2382)
T KOG0890|consen 1750 LIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLG 1796 (2382)
T ss_pred hhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHH
Confidence 111111 22332 5566788888888887777777777
No 286
>smart00512 Skp1 Found in Skp1 protein family. Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.
Probab=96.44 E-value=0.012 Score=52.48 Aligned_cols=81 Identities=20% Similarity=0.152 Sum_probs=59.0
Q ss_pred EEEEE-cCeEEEeehhHHhccCHHHHHHhcCCCCcCC-CCeeEecCCCCCHHHHHHHhhhHccCCCCC------------
Q 002379 220 VTFCV-RDKEISFVRNKIASLSSPFKAMLYGGFVESK-RKTIDFSHDGVSVEGLRAVEVYTRTSRVDL------------ 285 (929)
Q Consensus 220 v~~~v-~~~~~~~hr~iLaa~S~~F~~mf~~~~~e~~-~~~i~~~~~~~~~~~~~~~l~~~Yt~~~~~------------ 285 (929)
|+++- +|.+|.+.+.+. ..|..++.|+.+...+.. ...|.| ++|+..+|+.+++|++.-.-..
T Consensus 4 v~L~S~Dg~~f~v~~~~a-~~S~~i~~~l~~~~~~~~~~~~Ipl--~~v~~~~L~~Vi~yc~~h~~~~~~~~~~~~~~~w 80 (104)
T smart00512 4 IKLISSDGEVFEVEREVA-RQSKTIKAMIEDLGVDDENNNPIPL--PNVTSKILSKVIEYCEHHVDDPPSVADKDDIPTW 80 (104)
T ss_pred EEEEeCCCCEEEecHHHH-HHHHHHHHHHHccCcccCCCCCccC--CCcCHHHHHHHHHHHHHcccCCCCccccccccHH
Confidence 55554 788999999976 689999999976433322 257888 9999999999999996432211
Q ss_pred ------CChhHHHHHHHHhchhCh
Q 002379 286 ------FCPGIVLELLSFANRFCC 303 (929)
Q Consensus 286 ------~~~~~~~~ll~~A~~~~~ 303 (929)
++.+.+.+|+.||+.+++
T Consensus 81 D~~F~~~d~~~l~dLl~AAnyL~I 104 (104)
T smart00512 81 DAEFLKIDQETLFELILAANYLDI 104 (104)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCC
Confidence 445567777777777653
No 287
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=96.39 E-value=0.55 Score=50.76 Aligned_cols=176 Identities=18% Similarity=0.027 Sum_probs=127.8
Q ss_pred HHHHHhhchhccCc--hhHHHHHHHHHHHHc----CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH----hCCHHHHHHH
Q 002379 733 LLEEALRCPSDGLR--KGQALNNLGSIYVEC----GKLDQAENCYINALDIKHTRAHQGLARVYYL----KNELKAAYDE 802 (929)
Q Consensus 733 ~~e~Al~~~~~al~--~~~a~~~lg~~~~~~----g~~~eA~~~~~~al~~~~~~a~~~la~~~~~----~g~~~~A~~~ 802 (929)
.+..+...+..+-. ...+...++..|... .+..+|..+|..+...+++.+.+.+|..|.. ..+..+|...
T Consensus 56 ~~~~a~~~~~~a~~~~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~ 135 (292)
T COG0790 56 DYAKALKSYEKAAELGDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLAEALFNLGLMYANGRGVPLDLVKALKY 135 (292)
T ss_pred cHHHHHHHHHHhhhcCChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcccHHHHHhHHHHHhcCCCcccCHHHHHHH
Confidence 34444444444322 235677777777653 4688899999988888999999999999887 4589999999
Q ss_pred HHHHHHHccCCH-HHHHHHh---hhC--------CHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHh----cCCHHHHHHH
Q 002379 803 MTKLLEKAQYSA-SAFEKRS---EYS--------DREMAKNDLNMATQLDPLRTYPYRYRAAVLMD----DQKEVEAVEE 866 (929)
Q Consensus 803 ~~~al~~~p~~~-~~~~~lg---~~g--------~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~----~g~~~eA~~~ 866 (929)
|+++.+.....+ .+...++ ..| +...|...|.++-... ++.+...+|.+|.. ..++.+|..+
T Consensus 136 ~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~w 213 (292)
T COG0790 136 YEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRW 213 (292)
T ss_pred HHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHH
Confidence 999988754432 2234444 222 3347888898887766 78889999988865 3489999999
Q ss_pred HHHHHhcCCCchHHHHHHHHHHHcC---------------CHHHHHHHHHHHhccCCCCHH
Q 002379 867 LSKAIAFKPDLQMLHLRAAFYESIG---------------DLTSAIRDSQAALCLDPNHME 912 (929)
Q Consensus 867 l~kal~~~p~~~~~~~la~~~~~~g---------------~~~~A~~~~~~al~l~P~~~~ 912 (929)
|+++.+... ....+.++ ++...| +...|...+.++....+....
T Consensus 214 y~~Aa~~g~-~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 272 (292)
T COG0790 214 YKKAAEQGD-GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDNAC 272 (292)
T ss_pred HHHHHHCCC-HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChhHH
Confidence 999999877 55555667 666555 889999999999887665443
No 288
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=96.39 E-value=3.4 Score=49.56 Aligned_cols=211 Identities=14% Similarity=0.004 Sum_probs=128.1
Q ss_pred CCchhhhHHHHHHhhhh--HHHHHHHHHHhcCCC---------ChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccC----
Q 002379 482 KPTGWMYQERSLYNLGR--EKIVDLNYASELDPT---------LSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL---- 546 (929)
Q Consensus 482 ~~~~~~~~~~~l~~~~~--~Ai~~~~kal~l~P~---------~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~---- 546 (929)
.|.-.+.++...+...+ +|.....++-..-|. .+.....+|.+....|+++.|.+..+.++..-|
T Consensus 414 ~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~ 493 (894)
T COG2909 414 TPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAY 493 (894)
T ss_pred CchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccc
Confidence 34444445555554444 555555554443332 234456678888899999999999999886555
Q ss_pred --CHhHHHHHHHHHHHhccHHHHHHHHHHHHhhcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccc
Q 002379 547 --SVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIG 624 (929)
Q Consensus 547 --~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~ 624 (929)
...++...|.+..-.|++++|..+.+.+.+....+..++..+-+....+.+....|+...+.....
T Consensus 494 ~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~------------ 561 (894)
T COG2909 494 RSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKA------------ 561 (894)
T ss_pred hhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHH------------
Confidence 223366678888888999999999988888765554333322344445556666663322211110
Q ss_pred cHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhc----CCch--HH-HHHHHHHHHHHcCCHHHHHHHH
Q 002379 625 SLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNH----SSSE--HE-RLVYEGWILYDTGHREEALSRA 697 (929)
Q Consensus 625 ~l~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~----~p~~--~~-~~~~lg~~~~~~g~~~eA~~~~ 697 (929)
--....+-+...|-........+.++...-+++.+.......++. .|.. .. .+..++.+++..|++++|...+
T Consensus 562 ~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l 641 (894)
T COG2909 562 FNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQL 641 (894)
T ss_pred HHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 011223444445555555555566655555577777666666543 2322 22 2247899999999999999998
Q ss_pred HHHHhhc
Q 002379 698 EKSISIE 704 (929)
Q Consensus 698 ~~al~~~ 704 (929)
.+...+.
T Consensus 642 ~~~~~l~ 648 (894)
T COG2909 642 DELERLL 648 (894)
T ss_pred HHHHHHh
Confidence 8877653
No 289
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.38 E-value=1.7 Score=46.47 Aligned_cols=163 Identities=11% Similarity=-0.074 Sum_probs=96.5
Q ss_pred HHhCCHHHHHHHHHHHhccc-C-CHhH-------HHHHHHHHHHhc-cHHHHHHHHHHHHhhc----CCch---hh-hcc
Q 002379 526 MEEGQIRAAISEIDRIIVFK-L-SVDC-------LELRAWLFIAAD-DYESALRDTLALLALE----SNYM---MF-HGR 587 (929)
Q Consensus 526 ~~~g~~~~A~~~~~~al~~~-~-~~~~-------~~~~a~~~~~~g-~~~~A~~~~~~al~~~----p~~~---~~-~~~ 587 (929)
.++|+++.|..++.|+-... . +|+. +++.|...+..+ ++++|...++++.++- +... .. .-+
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 46788888888888876544 2 3433 566666667788 9999999999988872 2111 11 122
Q ss_pred ccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 002379 588 VSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLAR 667 (929)
Q Consensus 588 ~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al 667 (929)
...+..++.++...+..+..... ....+.+-...|+.+..+...-.+....++.+++.+.+.+++
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka---------------~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi 148 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKA---------------LNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMI 148 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHH---------------HHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHH
Confidence 34555666666554444322111 222244445567778877666666666889999999999988
Q ss_pred hcCCc-hHHHHHHHHHH-HHHcCCHHHHHHHHHHHHhh
Q 002379 668 NHSSS-EHERLVYEGWI-LYDTGHREEALSRAEKSISI 703 (929)
Q Consensus 668 ~~~p~-~~~~~~~lg~~-~~~~g~~~eA~~~~~~al~~ 703 (929)
..-+. ....-..+..+ .........|...+...+..
T Consensus 149 ~~~~~~e~~~~~~l~~i~~l~~~~~~~a~~~ld~~l~~ 186 (278)
T PF08631_consen 149 RSVDHSESNFDSILHHIKQLAEKSPELAAFCLDYLLLN 186 (278)
T ss_pred HhcccccchHHHHHHHHHHHHhhCcHHHHHHHHHHHHH
Confidence 76542 12211112222 11223345677777776654
No 290
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.35 E-value=0.12 Score=53.73 Aligned_cols=125 Identities=18% Similarity=0.073 Sum_probs=91.8
Q ss_pred HHHhhHHHHhcccHHHHHHHHHHHHhcCccccHH--HHHHHHHHhchHHHHHHHHHhhhccCCCchhhh-HHHH-HHhhh
Q 002379 422 LHQLGCVMFEREEYKDACYYFEAAADAGHIYSLA--GLARAKYKVGQQYSAYKLINSIISEHKPTGWMY-QERS-LYNLG 497 (929)
Q Consensus 422 ~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~~~a--~la~~~~~~g~a~~a~~~~~~~~~~~~~~~~~~-~~~~-l~~~~ 497 (929)
-+..|......|++.+|...|..+++..|.+..+ ++++++...|+...+-..+..+-.+.....|.. ..+. ++..-
T Consensus 137 ~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qa 216 (304)
T COG3118 137 ALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQA 216 (304)
T ss_pred HHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHH
Confidence 3456777889999999999999999999998766 899999999987666554443333323333333 1111 11111
Q ss_pred -h-HHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccC
Q 002379 498 -R-EKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL 546 (929)
Q Consensus 498 -~-~Ai~~~~kal~l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~ 546 (929)
. .-+..+++.+..||++..+-+.+|..+...|+.++|...+-..+..+.
T Consensus 217 a~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~ 267 (304)
T COG3118 217 AATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDR 267 (304)
T ss_pred hcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 1 335678888999999999999999999999999999998888875543
No 291
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.20 E-value=0.0064 Score=41.61 Aligned_cols=33 Identities=27% Similarity=0.322 Sum_probs=29.8
Q ss_pred HHHHHHhhHHHHhcccHHHHHHHHHHHHhcCcc
Q 002379 419 MLALHQLGCVMFEREEYKDACYYFEAAADAGHI 451 (929)
Q Consensus 419 a~~~~~lG~~~~~~g~y~~A~~~f~~al~~~~~ 451 (929)
+.+++.+|.++...|++++|+.+|+++++++|.
T Consensus 1 a~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 1 AEAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp -HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 357899999999999999999999999999874
No 292
>PRK10941 hypothetical protein; Provisional
Probab=96.14 E-value=0.037 Score=58.25 Aligned_cols=82 Identities=15% Similarity=0.107 Sum_probs=73.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHH-HHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHhhh
Q 002379 846 PYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQML-HLRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNRARDQA 924 (929)
Q Consensus 846 ~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~-~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~l~~~~ 924 (929)
...++-.+|.+.++++.|+.+.+..+.+.|+++.- .-+|.+|.++|.+..|..+++..++..|+++.+.....++....
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l~ 262 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSIE 262 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHHh
Confidence 34567778999999999999999999999999854 47899999999999999999999999999999999999998877
Q ss_pred hhh
Q 002379 925 SHQ 927 (929)
Q Consensus 925 ~~~ 927 (929)
.+.
T Consensus 263 ~~~ 265 (269)
T PRK10941 263 QKQ 265 (269)
T ss_pred hcC
Confidence 553
No 293
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.08 E-value=0.11 Score=50.72 Aligned_cols=65 Identities=18% Similarity=0.122 Sum_probs=51.9
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhcccCCHhHHHHHHHHHHHhccHHHHHHHHHHHHhhcCCch
Q 002379 518 YKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLALESNYM 582 (929)
Q Consensus 518 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~ 582 (929)
-..+|.+...+|++++|+..++...+-.-.+.....+|.++...|+-++|+..|++++...+...
T Consensus 129 ~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~ 193 (207)
T COG2976 129 ALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESDASPA 193 (207)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChH
Confidence 45678899999999999999888753222444477889999999999999999999999875544
No 294
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=96.06 E-value=0.0069 Score=54.02 Aligned_cols=40 Identities=10% Similarity=0.231 Sum_probs=37.6
Q ss_pred HHHHHHHHHHhChHHHHHHHHHHHHhchhhhcCccchhhh
Q 002379 324 ALILIDYGLEERATLLVASCLQVLLRELPSSLYNPKVMKI 363 (929)
Q Consensus 324 ~~~~~~~a~~~~~~~L~~~c~~~i~~~~~~v~~~~~f~~L 363 (929)
|+.++.+|..|++.+|...|.+||..||.+++.+++|.+|
T Consensus 1 C~~i~~~A~~~~~~~L~~~~~~~i~~nf~~v~~~~~f~~L 40 (103)
T PF07707_consen 1 CLSIYRLAEKYGLEELAEACLRFIAKNFNEVSKSDEFLEL 40 (103)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTHHHHTTSHHHHCS
T ss_pred ChhHHHHHHHcChHHHHHHHHHHHHHHHHHHccchhhhcC
Confidence 7899999999999999999999999999999999999886
No 295
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.01 E-value=1.7 Score=50.08 Aligned_cols=233 Identities=15% Similarity=0.035 Sum_probs=127.2
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHH----------HHHHHHHHHcCCHHHHHHHHHH
Q 002379 630 NQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERL----------VYEGWILYDTGHREEALSRAEK 699 (929)
Q Consensus 630 ~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~----------~~lg~~~~~~g~~~eA~~~~~~ 699 (929)
.+.++.+| ++.+|..++......-.++-|...|-+.-. .|. ...- ...+.+-.--|++++|.+.|-.
T Consensus 683 ~qfiEdnP-HprLWrllAe~Al~Kl~l~tAE~AFVrc~d-Y~G-ik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld 759 (1189)
T KOG2041|consen 683 IQFIEDNP-HPRLWRLLAEYALFKLALDTAEHAFVRCGD-YAG-IKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLD 759 (1189)
T ss_pred HHHHhcCC-chHHHHHHHHHHHHHHhhhhHhhhhhhhcc-ccc-hhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhc
Confidence 45555555 688999999888777777777777655422 111 1111 2234444445888999888854
Q ss_pred HHhhccchHHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccC------chhHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002379 700 SISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGL------RKGQALNNLGSIYVECGKLDQAENCYIN 773 (929)
Q Consensus 700 al~~~p~~~~~~~l~~~l~~~~~~~~~~~~a~~~~e~Al~~~~~al------~~~~a~~~lg~~~~~~g~~~eA~~~~~~ 773 (929)
+=+.+---+.+..+ ++|-...+.++..- ....++.++|..+..+..|++|.++|.+
T Consensus 760 ~drrDLAielr~kl------------------gDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~ 821 (1189)
T KOG2041|consen 760 ADRRDLAIELRKKL------------------GDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSY 821 (1189)
T ss_pred cchhhhhHHHHHhh------------------hhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 32211100111111 12222222222211 0137889999999999999999999977
Q ss_pred HHcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHh----hhCCHHHHHHHHHHHHhcCCCCcHHHHH
Q 002379 774 ALDIKHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS----EYSDREMAKNDLNMATQLDPLRTYPYRY 849 (929)
Q Consensus 774 al~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg----~~g~~~~A~~~~~~al~l~p~~~~~~~~ 849 (929)
.-.. .++..+++...++++- +.+...-|++...+-.++ ..|--++|.+.|-+.-. | .+-
T Consensus 822 ~~~~------e~~~ecly~le~f~~L----E~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~--p---kaA-- 884 (1189)
T KOG2041|consen 822 CGDT------ENQIECLYRLELFGEL----EVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSL--P---KAA-- 884 (1189)
T ss_pred ccch------HhHHHHHHHHHhhhhH----HHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhccC--c---HHH--
Confidence 5432 3455666666665543 334444566555555544 34555666666654211 1 111
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHH-HHHHHHcCCHHHHHHHHHHH
Q 002379 850 RAAVLMDDQKEVEAVEELSKAIAFKPDLQMLHLR-AAFYESIGDLTSAIRDSQAA 903 (929)
Q Consensus 850 la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~l-a~~~~~~g~~~~A~~~~~~a 903 (929)
-......++|.+|.+.-++- .-|....+..+ +.-+...++..+|++.++++
T Consensus 885 -v~tCv~LnQW~~avelaq~~--~l~qv~tliak~aaqll~~~~~~eaIe~~Rka 936 (1189)
T KOG2041|consen 885 -VHTCVELNQWGEAVELAQRF--QLPQVQTLIAKQAAQLLADANHMEAIEKDRKA 936 (1189)
T ss_pred -HHHHHHHHHHHHHHHHHHhc--cchhHHHHHHHHHHHHHhhcchHHHHHHhhhc
Confidence 11334456666666665432 12333444433 44555677788888887776
No 296
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=95.97 E-value=0.013 Score=40.00 Aligned_cols=32 Identities=31% Similarity=0.317 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhccc
Q 002379 675 ERLVYEGWILYDTGHREEALSRAEKSISIERT 706 (929)
Q Consensus 675 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~ 706 (929)
.+|+.+|.+|...|++++|+..|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 35666666666666666666666666666663
No 297
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=95.96 E-value=4.1 Score=53.85 Aligned_cols=362 Identities=14% Similarity=0.069 Sum_probs=180.1
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHhcc-cC---CHhHHHHHHHHHHHhccHHHHHHHHHHHHhhcCCchhhhccccHHHHHH
Q 002379 520 YRAVAKMEEGQIRAAISEIDRIIVF-KL---SVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVK 595 (929)
Q Consensus 520 ~~a~~~~~~g~~~~A~~~~~~al~~-~~---~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~ll~ 595 (929)
.+|.+-++.+.|..|+.++++--.. .+ ....+..+-.+|...++++.-........ .+|+-. ..-
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~-a~~sl~----------~qi 1456 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRF-ADPSLY----------QQI 1456 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhh-cCccHH----------HHH
Confidence 4566667777788888888773110 11 12224444446666677666555544311 111111 122
Q ss_pred HHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHH
Q 002379 596 LLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHE 675 (929)
Q Consensus 596 ~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~ 675 (929)
......|+|..| ..+|+++++.+|+....+...-...+..|.+...+...+-.....++...
T Consensus 1457 l~~e~~g~~~da------------------~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~ 1518 (2382)
T KOG0890|consen 1457 LEHEASGNWADA------------------AACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVD 1518 (2382)
T ss_pred HHHHhhccHHHH------------------HHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHH
Confidence 334556677666 55668888888887777777777777777888777777666655555555
Q ss_pred HHHHHH-HHHHHcCCHHHHHHHHHHHHhhccchHHHHH--HHHHHHhcC-CCCCChHHHHHHHHH-Hhhchhcc-Cch--
Q 002379 676 RLVYEG-WILYDTGHREEALSRAEKSISIERTFEAFFL--KAYILADTN-LDPESSTYVIQLLEE-ALRCPSDG-LRK-- 747 (929)
Q Consensus 676 ~~~~lg-~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~--l~~~l~~~~-~~~~~~~~a~~~~e~-Al~~~~~a-l~~-- 747 (929)
-++.+| .+.++.++++.-..+.. +.+.+.|.. +|..+.... .+.-.....+....+ .++-+..+ ...
T Consensus 1519 ~~~s~~~eaaW~l~qwD~~e~~l~-----~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy 1593 (2382)
T KOG0890|consen 1519 ELNSLGVEAAWRLSQWDLLESYLS-----DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSY 1593 (2382)
T ss_pred HHHHHHHHHHhhhcchhhhhhhhh-----cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchH
Confidence 555443 33466677666555433 111111111 222222211 111111011111000 00000000 000
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---Hcc----CCHHH
Q 002379 748 GQALNNLGSIYVECGKLDQAENCYINALDI----KHTRAHQGLARVYYLKNELKAAYDEMTKLLE---KAQ----YSASA 816 (929)
Q Consensus 748 ~~a~~~lg~~~~~~g~~~eA~~~~~~al~~----~~~~a~~~la~~~~~~g~~~~A~~~~~~al~---~~p----~~~~~ 816 (929)
...|..+-..+. .-+.+.-++...+.-.. ...+-|.+....-....+..+-+-.+++++- ..| ..+..
T Consensus 1594 ~~~Y~~~~kLH~-l~el~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~ 1672 (2382)
T KOG0890|consen 1594 VRSYEILMKLHL-LLELENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGEC 1672 (2382)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHH
Confidence 011111111110 01111111111111100 1112333332221122223344444444432 122 23456
Q ss_pred HHHHh----hhCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCc--------h----H
Q 002379 817 FEKRS----EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFK-PDL--------Q----M 879 (929)
Q Consensus 817 ~~~lg----~~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~-p~~--------~----~ 879 (929)
|.+.+ ..|+++.|...+-+|.+.. -+.++...|..+...|+-..|+..+++.++.+ |+. . .
T Consensus 1673 wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~ 1750 (2382)
T KOG0890|consen 1673 WLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLL 1750 (2382)
T ss_pred HHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhh
Confidence 66666 4688888888888887766 57888999999999999999999999999653 321 1 1
Q ss_pred HH-----HHHHHHHHcCCH--HHHHHHHHHHhccCCCCHHHHHHHH
Q 002379 880 LH-----LRAAFYESIGDL--TSAIRDSQAALCLDPNHMETLDLYN 918 (929)
Q Consensus 880 ~~-----~la~~~~~~g~~--~~A~~~~~~al~l~P~~~~a~~~~~ 918 (929)
.+ ..+......|+. ++-+++|..+.++.|...+.+..++
T Consensus 1751 i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~ 1796 (2382)
T KOG0890|consen 1751 IFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLG 1796 (2382)
T ss_pred hhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHH
Confidence 11 224444555653 3557789999999996665555444
No 298
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=95.93 E-value=0.025 Score=55.21 Aligned_cols=90 Identities=17% Similarity=0.159 Sum_probs=76.3
Q ss_pred EEEEEcCeEEEeehhHHhccCH--HHHHHhcCC---CCcCCCCeeEecCCCCCHHHHHHHhhhHccCCCCCCChhHHHHH
Q 002379 220 VTFCVRDKEISFVRNKIASLSS--PFKAMLYGG---FVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFCPGIVLEL 294 (929)
Q Consensus 220 v~~~v~~~~~~~hr~iLaa~S~--~F~~mf~~~---~~e~~~~~i~~~~~~~~~~~~~~~l~~~Yt~~~~~~~~~~~~~l 294 (929)
|.+-|+|+.|..-+--|..|-| -..+||.+. -.|+.++-+-| |-+|.-|+.+|.|+..|.++..+.-+++++
T Consensus 11 vrlnigGk~f~TTidTlv~rEPDSMLa~MF~~~g~~~~~d~kGa~lI---DRsp~yFepIlNyLr~Gq~~~~s~i~~lgv 87 (302)
T KOG1665|consen 11 VRLNIGGKKFCTTIDTLVIREPDSMLAAMFSGRGAMCQEDKKGAVLI---DRSPKYFEPILNYLRDGQIPSLSDIDCLGV 87 (302)
T ss_pred heeecCCeEEEEeehhhcccCchHHHHHHHccCCCccccccCceEEE---ccCchhhHHHHHHHhcCceeecCCccHHHH
Confidence 9999999999888777777743 567899763 34556667777 679999999999999999998788899999
Q ss_pred HHHhchhChHhHHHHHHH
Q 002379 295 LSFANRFCCEEMKSACDA 312 (929)
Q Consensus 295 l~~A~~~~~~~l~~~C~~ 312 (929)
|..|++|++-+|+++-+.
T Consensus 88 LeeArff~i~sL~~hle~ 105 (302)
T KOG1665|consen 88 LEEARFFQILSLKDHLED 105 (302)
T ss_pred HHHhhHHhhHhHHhHHhh
Confidence 999999999999988877
No 299
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=95.93 E-value=2.4 Score=47.07 Aligned_cols=171 Identities=15% Similarity=0.032 Sum_probs=111.1
Q ss_pred CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccC-----CHhHHHHHHHHHHHhccHHHHHHHHHHHHhhcCCch-hh
Q 002379 511 DPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-----SVDCLELRAWLFIAADDYESALRDTLALLALESNYM-MF 584 (929)
Q Consensus 511 ~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~-----~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~-~~ 584 (929)
.......|...+.+..+.|+++.|...+.++....+ .|......+.+....|+..+|+..++..+....... ..
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~ 221 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDS 221 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccc
Confidence 556677899999999999999999999999986552 567788889999999999999999999887322211 00
Q ss_pred hccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHHHHh------cCHHH
Q 002379 585 HGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRL------NCQKA 658 (929)
Q Consensus 585 ~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~lg~~~~~~------g~~~~ 658 (929)
.. ......+..+ ..+.. . .. ..........+.++..+|...... ++.++
T Consensus 222 ~~--~~~~~~~~~~----~~~~~-------------~-~~-----~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~ 276 (352)
T PF02259_consen 222 IS--NAELKSGLLE----SLEVI-------------S-ST-----NLDKESKELKAKAFLLLAKWLDELYSKLSSESSDE 276 (352)
T ss_pred cc--HHHHhhcccc----ccccc-------------c-cc-----chhhhhHHHHHHHHHHHHHHHHhhccccccccHHH
Confidence 00 0000000000 00000 0 00 000000011245667777777777 88999
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHcCC-----------------HHHHHHHHHHHHhhccc
Q 002379 659 AMRCLRLARNHSSSEHERLVYEGWILYDTGH-----------------REEALSRAEKSISIERT 706 (929)
Q Consensus 659 A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~-----------------~~eA~~~~~~al~~~p~ 706 (929)
++..|+++.+.+|....+|+.+|..+...-+ ...|+..|-+++...++
T Consensus 277 ~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 277 ILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred HHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 9999999999999999999988887755322 13366666666666655
No 300
>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only]
Probab=95.90 E-value=0.03 Score=60.42 Aligned_cols=85 Identities=16% Similarity=0.083 Sum_probs=68.6
Q ss_pred EEEEEcCeEEEeehhHHhccC--HHHHHHhcCCCCcCCCCe--eEecCCCCCHHHHHHHhhhHccCCCCCCChhHH-HHH
Q 002379 220 VTFCVRDKEISFVRNKIASLS--SPFKAMLYGGFVESKRKT--IDFSHDGVSVEGLRAVEVYTRTSRVDLFCPGIV-LEL 294 (929)
Q Consensus 220 v~~~v~~~~~~~hr~iLaa~S--~~F~~mf~~~~~e~~~~~--i~~~~~~~~~~~~~~~l~~~Yt~~~~~~~~~~~-~~l 294 (929)
|.|-|||+.|.-.+.-|+--. .+|-++|++.|.-...+. |-| |=+|+.|..+|+|+.||.|+ ++.-.. ..+
T Consensus 13 V~lNVGGriF~Ts~qTL~~~~~DSffsaL~s~~~~s~~~~~~~iFI---DRDPdlFaviLn~LRTg~L~-~~g~~~~~ll 88 (465)
T KOG2714|consen 13 VKLNVGGRIFETSAQTLTWIPRDSFFSALLSGRINSLKDESGAIFI---DRDPDLFAVILNLLRTGDLD-ASGVFPERLL 88 (465)
T ss_pred EEEecCceEEecchhhhhcCCcchHHHHHhcCccccccCCCCceEe---cCCchHHHHHHHHHhcCCCC-CccCchhhhh
Confidence 999999999999999986554 699999998887555443 655 66899999999999999999 544333 445
Q ss_pred HHHhchhChHhHHH
Q 002379 295 LSFANRFCCEEMKS 308 (929)
Q Consensus 295 l~~A~~~~~~~l~~ 308 (929)
..=|-+|+++.|.+
T Consensus 89 hdEA~fYGl~~llr 102 (465)
T KOG2714|consen 89 HDEAMFYGLTPLLR 102 (465)
T ss_pred hhhhhhcCcHHHHH
Confidence 55899999998876
No 301
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=95.89 E-value=1.5 Score=47.38 Aligned_cols=123 Identities=22% Similarity=0.084 Sum_probs=79.3
Q ss_pred HHHHHHHHHHH----cCCHHHHHHHHHHHHcCCCHHH---HHHHHHHHHHhC-------CHHHHHHHHHHHHHHccCCHH
Q 002379 750 ALNNLGSIYVE----CGKLDQAENCYINALDIKHTRA---HQGLARVYYLKN-------ELKAAYDEMTKLLEKAQYSAS 815 (929)
Q Consensus 750 a~~~lg~~~~~----~g~~~eA~~~~~~al~~~~~~a---~~~la~~~~~~g-------~~~~A~~~~~~al~~~p~~~~ 815 (929)
+.+++|.+|.. ..++.+|..+|+++.+.+++.+ .+.++..|..-+ +...|...|.++.... +..
T Consensus 111 a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~ 188 (292)
T COG0790 111 ALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPD 188 (292)
T ss_pred HHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHH
Confidence 45556665555 3477778888888877766666 777777766542 1235777777766554 444
Q ss_pred HHHHHh--------hhCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcC---------------CHHHHHHHHHHHHh
Q 002379 816 AFEKRS--------EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQ---------------KEVEAVEELSKAIA 872 (929)
Q Consensus 816 ~~~~lg--------~~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g---------------~~~eA~~~l~kal~ 872 (929)
+...+| .-.+..+|...|.++.+... ..+.+.++ ++...| +...|...+.++..
T Consensus 189 a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~ 265 (292)
T COG0790 189 AQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACE 265 (292)
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHH
Confidence 444444 23477888888888888776 77778888 666555 66666777766665
Q ss_pred cCCCc
Q 002379 873 FKPDL 877 (929)
Q Consensus 873 ~~p~~ 877 (929)
..+..
T Consensus 266 ~~~~~ 270 (292)
T COG0790 266 LGFDN 270 (292)
T ss_pred cCChh
Confidence 54443
No 302
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=95.69 E-value=0.53 Score=51.55 Aligned_cols=150 Identities=13% Similarity=0.005 Sum_probs=104.6
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHhcC------------HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHH
Q 002379 627 AVINQMLINDPGKSFLRFRQSLLLLRLNC------------QKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEAL 694 (929)
Q Consensus 627 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~------------~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~ 694 (929)
..+++.++.+|.+..+|..+....-..-. .+.-+..|++|++.+|++...+..+-....+..+.++..
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~ 85 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLA 85 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 34588899999999999988876554422 456678999999999999999888888888888999999
Q ss_pred HHHHHHHhhccch-HHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCch---------------hHHHHHHHHHH
Q 002379 695 SRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRK---------------GQALNNLGSIY 758 (929)
Q Consensus 695 ~~~~~al~~~p~~-~~~~~l~~~l~~~~~~~~~~~~a~~~~e~Al~~~~~al~~---------------~~a~~~lg~~~ 758 (929)
+.+++++..+|++ ..|.......... ...-........|.+++..+...... ...+..+....
T Consensus 86 ~~we~~l~~~~~~~~LW~~yL~~~q~~-~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl 164 (321)
T PF08424_consen 86 KKWEELLFKNPGSPELWREYLDFRQSN-FASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFL 164 (321)
T ss_pred HHHHHHHHHCCCChHHHHHHHHHHHHH-hccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHH
Confidence 9999999999988 5555443332221 23334555566666666655444221 13445555556
Q ss_pred HHcCCHHHHHHHHHHHHcC
Q 002379 759 VECGKLDQAENCYINALDI 777 (929)
Q Consensus 759 ~~~g~~~eA~~~~~~al~~ 777 (929)
...|..+.|+..++..++.
T Consensus 165 ~~aG~~E~Ava~~Qa~lE~ 183 (321)
T PF08424_consen 165 RQAGYTERAVALWQALLEF 183 (321)
T ss_pred HHCCchHHHHHHHHHHHHH
Confidence 6667777777777666665
No 303
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.65 E-value=0.16 Score=48.46 Aligned_cols=62 Identities=24% Similarity=0.095 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002379 641 FLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSIS 702 (929)
Q Consensus 641 ~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~ 702 (929)
.+...++..+...|++++|+..+++++..+|.+..++..+..+|...|+..+|+..|++..+
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 45667888899999999999999999999999999999999999999999999999998765
No 304
>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones]
Probab=95.60 E-value=0.063 Score=51.37 Aligned_cols=99 Identities=15% Similarity=0.181 Sum_probs=75.1
Q ss_pred cCeEEEeehhHHhccCHHHHHHhcC-CCCcCCCCeeEecCCCCCHHHHHHHhhhHccCCCC-----------------C-
Q 002379 225 RDKEISFVRNKIASLSSPFKAMLYG-GFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVD-----------------L- 285 (929)
Q Consensus 225 ~~~~~~~hr~iLaa~S~~F~~mf~~-~~~e~~~~~i~~~~~~~~~~~~~~~l~~~Yt~~~~-----------------~- 285 (929)
+|+.|.+-+.+ |-.|...++|+.. |..... ..|.| ++|+..+|+.|++|++.-+-+ .
T Consensus 13 DG~~f~ve~~~-a~~s~~i~~~~~~~~~~~~~-~~IPl--~nV~~~iL~kVIewC~~Hk~d~~~~~~~~~~~~~~~i~~W 88 (162)
T KOG1724|consen 13 DGEIFEVEEEV-ARQSQTISAHMIEDGCADEN-DPIPL--PNVTSKILKKVIEWCKKHKDDDPANPEDKELPEETDIPEW 88 (162)
T ss_pred CCceeehhHHH-HHHhHHHHHHHHHcCCCccC-Ccccc--CccCHHHHHHHHHHHHHcccccccccccccccccCCccHH
Confidence 67777776665 4678888888853 333222 57888 899999999999999874421 0
Q ss_pred ------CChhHHHHHHHHhchhChHhHHHHHHHHHHhhcC--ChhhHHHH
Q 002379 286 ------FCPGIVLELLSFANRFCCEEMKSACDAHLASLVG--DIEDALIL 327 (929)
Q Consensus 286 ------~~~~~~~~ll~~A~~~~~~~l~~~C~~~l~~~~~--~~~n~~~~ 327 (929)
++.+++.+|+.+|+.+.+.+|...|++.+...+. |++....+
T Consensus 89 D~~Flk~d~~tLfdli~AAnyLdi~gLl~~~ck~va~mikgktpeEir~~ 138 (162)
T KOG1724|consen 89 DAEFLKVDQGTLFDLILAANYLDIKGLLDLTCKTVANMIKGKTPEEIREI 138 (162)
T ss_pred HHHHHhcCHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHccCCHHHHHHH
Confidence 4456899999999999999999999999999885 25544443
No 305
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.39 E-value=0.023 Score=39.57 Aligned_cols=28 Identities=32% Similarity=0.544 Sum_probs=24.4
Q ss_pred HHHHhhHHHHhcccHHHHHHHHHHHHhc
Q 002379 421 ALHQLGCVMFEREEYKDACYYFEAAADA 448 (929)
Q Consensus 421 ~~~~lG~~~~~~g~y~~A~~~f~~al~~ 448 (929)
++..+|.+|...|+|++|+.+|++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4678999999999999999999997765
No 306
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=95.29 E-value=4.5 Score=45.95 Aligned_cols=96 Identities=13% Similarity=0.076 Sum_probs=74.3
Q ss_pred HHHHHH-HHhCCHHHHHHHHHHHHHHccCCHHH-HHHHh----hhCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcC
Q 002379 785 GLARVY-YLKNELKAAYDEMTKLLEKAQYSASA-FEKRS----EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQ 858 (929)
Q Consensus 785 ~la~~~-~~~g~~~~A~~~~~~al~~~p~~~~~-~~~lg----~~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g 858 (929)
++|-+| ...|+...|+..+..++...|....+ ..+++ .+|-...|-..+.+++.+....+..++.+|..++...
T Consensus 611 n~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~ 690 (886)
T KOG4507|consen 611 NEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALK 690 (886)
T ss_pred ecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHh
Confidence 333343 45788999999999998887765432 23333 4566677888888999888888888889999999999
Q ss_pred CHHHHHHHHHHHHhcCCCchHH
Q 002379 859 KEVEAVEELSKAIAFKPDLQML 880 (929)
Q Consensus 859 ~~~eA~~~l~kal~~~p~~~~~ 880 (929)
+.+.|++.|++|++.+|+++..
T Consensus 691 ~i~~a~~~~~~a~~~~~~~~~~ 712 (886)
T KOG4507|consen 691 NISGALEAFRQALKLTTKCPEC 712 (886)
T ss_pred hhHHHHHHHHHHHhcCCCChhh
Confidence 9999999999999999988643
No 307
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=95.03 E-value=0.07 Score=55.02 Aligned_cols=67 Identities=22% Similarity=0.189 Sum_probs=54.4
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCchHHH-HHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHH
Q 002379 853 VLMDDQKEVEAVEELSKAIAFKPDLQMLH-LRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNR 919 (929)
Q Consensus 853 ~~~~~g~~~eA~~~l~kal~~~p~~~~~~-~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~ 919 (929)
-..+.|+.++|...|+.|+.+.|+++... -.|.+....++.-+|-.+|-+||.++|.|.+++.++.|
T Consensus 125 ~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R 192 (472)
T KOG3824|consen 125 RSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR 192 (472)
T ss_pred HHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence 34567888888888888888888887666 45888888888888888888888888888888877765
No 308
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.98 E-value=0.036 Score=38.53 Aligned_cols=30 Identities=27% Similarity=0.380 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhcc
Q 002379 676 RLVYEGWILYDTGHREEALSRAEKSISIER 705 (929)
Q Consensus 676 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~p 705 (929)
++.++|.+|...|++++|+.+|++++.+.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~ 30 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALAR 30 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 467788888888888888888888765543
No 309
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=94.98 E-value=1.3 Score=49.16 Aligned_cols=148 Identities=12% Similarity=-0.005 Sum_probs=101.2
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------------CC------------ch---HHHHHHH
Q 002379 630 NQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNH--------------SS------------SE---HERLVYE 680 (929)
Q Consensus 630 ~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~--------------~p------------~~---~~~~~~l 680 (929)
...+..+|-+...+..++.++..+|+.+.|.+.+++|+-. ++ .| ..+.+..
T Consensus 30 ~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~ 109 (360)
T PF04910_consen 30 INLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRY 109 (360)
T ss_pred HHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHH
Confidence 4566788999999999999999999999999999888521 11 11 2234556
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHH
Q 002379 681 GWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVE 760 (929)
Q Consensus 681 g~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~l~~~l~~~~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~ 760 (929)
...+.+.|-+..|.+..+-.+.++|..+ |-.+.+.+-....+
T Consensus 110 i~~L~~RG~~rTAlE~~KlLlsLdp~~D--------------------------------------P~g~ll~ID~~ALr 151 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLSLDPDED--------------------------------------PLGVLLFIDYYALR 151 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCC--------------------------------------cchhHHHHHHHHHh
Confidence 7788889999999999999999999840 01112222223334
Q ss_pred cCCHHHHHHHHHHHHcC-------CCHHHHHHHHHHHHHhCCH---------------HHHHHHHHHHHHHccCCHH
Q 002379 761 CGKLDQAENCYINALDI-------KHTRAHQGLARVYYLKNEL---------------KAAYDEMTKLLEKAQYSAS 815 (929)
Q Consensus 761 ~g~~~eA~~~~~~al~~-------~~~~a~~~la~~~~~~g~~---------------~~A~~~~~~al~~~p~~~~ 815 (929)
.++++--++.++..... .-|..-+..+.+++..++. +.|...+.+++...|.-..
T Consensus 152 s~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~vl~ 228 (360)
T PF04910_consen 152 SRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWVLV 228 (360)
T ss_pred cCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHHHH
Confidence 44444444444443331 1345667777888888887 8899999999988775443
No 310
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.94 E-value=6.4 Score=42.15 Aligned_cols=227 Identities=12% Similarity=0.024 Sum_probs=122.8
Q ss_pred HHhcCHHHHHHHHHHHHhcC----Cch----HHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhccchHHHHHHHHHHHhcC
Q 002379 651 LRLNCQKAAMRCLRLARNHS----SSE----HERLVYEGWILYDTG-HREEALSRAEKSISIERTFEAFFLKAYILADTN 721 (929)
Q Consensus 651 ~~~g~~~~A~~~l~~al~~~----p~~----~~~~~~lg~~~~~~g-~~~eA~~~~~~al~~~p~~~~~~~l~~~l~~~~ 721 (929)
.++|+.+.|..++.++-... |+. ...+++.|......+ ++++|...++++.++-... ....
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~----------~~~~ 73 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKP----------GKMD 73 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhh----------hhcc
Confidence 46799999999999986543 433 445677888888899 9999999999998863210 0000
Q ss_pred CCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHH---HHHHHHcC--CCHHHHHHHHHHHHHhCCH
Q 002379 722 LDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAEN---CYINALDI--KHTRAHQGLARVYYLKNEL 796 (929)
Q Consensus 722 ~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~---~~~~al~~--~~~~a~~~la~~~~~~g~~ 796 (929)
....... . -...++..++.+|...+.++...+ ..+.+... +++..+...-.+..+.++.
T Consensus 74 ~~~~~~~----e------------lr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~ 137 (278)
T PF08631_consen 74 KLSPDGS----E------------LRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDE 137 (278)
T ss_pred ccCCcHH----H------------HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCCh
Confidence 0000000 0 013457778888888777654333 33333222 3444543444444447888
Q ss_pred HHHHHHHHHHHHHcc--C-CHHH-HHHHh--hhCCHHHHHHHHHHHHh--cCCCCcHHHHHHHH---HHHhcC--C----
Q 002379 797 KAAYDEMTKLLEKAQ--Y-SASA-FEKRS--EYSDREMAKNDLNMATQ--LDPLRTYPYRYRAA---VLMDDQ--K---- 859 (929)
Q Consensus 797 ~~A~~~~~~al~~~p--~-~~~~-~~~lg--~~g~~~~A~~~~~~al~--l~p~~~~~~~~la~---~~~~~g--~---- 859 (929)
+++.+.+.+++...+ + +... ..... .......|...+...+. ..|.... |..... ++...+ +
T Consensus 138 ~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~-~~e~~vl~~~~~~~~~~~~~~~ 216 (278)
T PF08631_consen 138 EEYEEILMRMIRSVDHSESNFDSILHHIKQLAEKSPELAAFCLDYLLLNRFKSSEDQ-WLEKLVLTRVLLTTQSKDLSSS 216 (278)
T ss_pred hHHHHHHHHHHHhcccccchHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCChhH-HHHHHHHHHHHHHcCCccccch
Confidence 888888888886543 1 1111 11110 12233455555555543 2332221 322221 222222 2
Q ss_pred --HHHHHHHHHHHHhc--CCCc-h-------HHHHHHHHHHHcCCHHHHHHHHHHHh
Q 002379 860 --EVEAVEELSKAIAF--KPDL-Q-------MLHLRAAFYESIGDLTSAIRDSQAAL 904 (929)
Q Consensus 860 --~~eA~~~l~kal~~--~p~~-~-------~~~~la~~~~~~g~~~~A~~~~~~al 904 (929)
.+...+.+....+. .|-. . .++..|...++.++|+.|.++|+-++
T Consensus 217 ~~i~~l~~~~~~v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 217 EKIESLEELLSIVEHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred hHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 22222333322111 1111 1 22355999999999999999999776
No 311
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=94.94 E-value=1.1 Score=42.77 Aligned_cols=57 Identities=19% Similarity=0.162 Sum_probs=33.1
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHhcccC-CHhHHHHHHHHHHHhccHHHHHHHHHHHH
Q 002379 519 KYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLALL 575 (929)
Q Consensus 519 ~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~~g~~~~A~~~~~~al 575 (929)
..++..+...|++++|+..+++++..+| +...+..+..++...|+..+|++.|++..
T Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 66 ERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3445555666666666666666666666 44455566666666666666666666553
No 312
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=94.87 E-value=0.05 Score=36.65 Aligned_cols=33 Identities=27% Similarity=0.378 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCC
Q 002379 781 RAHQGLARVYYLKNELKAAYDEMTKLLEKAQYS 813 (929)
Q Consensus 781 ~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 813 (929)
++++.+|.++...|++++|...|+++++..|++
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 467888999999999999999999999888864
No 313
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=94.87 E-value=0.14 Score=40.66 Aligned_cols=56 Identities=23% Similarity=0.191 Sum_probs=43.8
Q ss_pred EEEEE-cCeEEEeehhHHhccCHHHHHHhcCCCCcCCCCeeEecCCCCCHHHHHHHhhhHcc
Q 002379 220 VTFCV-RDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRT 280 (929)
Q Consensus 220 v~~~v-~~~~~~~hr~iLaa~S~~F~~mf~~~~~e~~~~~i~~~~~~~~~~~~~~~l~~~Yt 280 (929)
|+++- +|+.|.+.+.+. -.|..++.||.+...+.. .|.+ ++|+..+++.+++|++.
T Consensus 3 v~L~SsDg~~f~V~~~~a-~~S~~i~~ml~~~~~~~~--~Ipl--~~v~~~~L~kViewc~~ 59 (62)
T PF03931_consen 3 VKLVSSDGQEFEVSREAA-KQSKTIKNMLEDLGDEDE--PIPL--PNVSSRILKKVIEWCEH 59 (62)
T ss_dssp EEEEETTSEEEEEEHHHH-TTSHHHHHHHHCTCCCGT--EEEE--TTS-HHHHHHHHHHHHH
T ss_pred EEEEcCCCCEEEeeHHHH-HHhHHHHHHHhhhccccc--cccc--CccCHHHHHHHHHHHHh
Confidence 44554 789999988886 589999999986443333 7999 99999999999999863
No 314
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=94.84 E-value=15 Score=45.87 Aligned_cols=325 Identities=13% Similarity=0.045 Sum_probs=161.6
Q ss_pred HHHHHHhccHHHHHHHHHHHHhhcCCchhhhccccHHHHHHHHHHh-----hc--ccchHHHHHHhhhccccccccccHH
Q 002379 555 AWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHH-----VR--SWSPADCWIKLYDRWSSVDDIGSLA 627 (929)
Q Consensus 555 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~ll~~~~~~-----~~--~~~~A~~~l~l~~~~~~~~~~~~l~ 627 (929)
..+++..+.|+.|+..|+++-.-.|....- + ++..-.|..... .+ .+++| +.
T Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~ 540 (932)
T PRK13184 482 PDAFLAEKLYDQALIFYRRIRESFPGRKEG--Y-EAQFRLGITLLEKASEQGDPRDFTQA------------------LS 540 (932)
T ss_pred cHHHHhhHHHHHHHHHHHHHhhcCCCcccc--h-HHHHHhhHHHHHHHHhcCChHHHHHH------------------HH
Confidence 344566778888888888888877776611 1 333333333211 11 22223 22
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHh
Q 002379 628 VINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDT-----GHREEALSRAEKSIS 702 (929)
Q Consensus 628 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~-----g~~~eA~~~~~~al~ 702 (929)
.|++ +...|..|.-|...|.+|.++|++++-+++|.-|++..|++|..-...-.+-+++ .+...|....--++.
T Consensus 541 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 619 (932)
T PRK13184 541 EFSY-LHGGVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREALVFMLLALW 619 (932)
T ss_pred HHHH-hcCCCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222 3345778888999999999999999999999999999999877654443333332 223455566666666
Q ss_pred hccch-HH---HHHHHHHHHhcC------CCCCChHHHHHHHHHHhhch-----------hccC--chhHHHHHHHHHHH
Q 002379 703 IERTF-EA---FFLKAYILADTN------LDPESSTYVIQLLEEALRCP-----------SDGL--RKGQALNNLGSIYV 759 (929)
Q Consensus 703 ~~p~~-~~---~~~l~~~l~~~~------~~~~~~~~a~~~~e~Al~~~-----------~~al--~~~~a~~~lg~~~~ 759 (929)
+.|.. .. -..+-....... .++......-..++--+..+ ++++ ++-.+..+.=.+..
T Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 699 (932)
T PRK13184 620 IAPEKISSREEEKFLEILYHKQQATLFCQLDKTPLQFRSSKMELFLSFWSGFTPFLPELFQRAWDLRDYRALADIFYVAC 699 (932)
T ss_pred hCcccccchHHHHHHHHHHhhccCCceeeccCchhhhhhhhHHHHHHHHhcCchhhHHHHHHHhhcccHHHHHHHHHHHH
Confidence 66655 11 111111111110 11111111111122222111 1111 12244444555556
Q ss_pred HcCCHHHHHHHHHHHHcC----CCHH-H----------HHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHH----HHHH
Q 002379 760 ECGKLDQAENCYINALDI----KHTR-A----------HQGLARVYYLKNELKAAYDEMTKLLEKAQYSASA----FEKR 820 (929)
Q Consensus 760 ~~g~~~eA~~~~~~al~~----~~~~-a----------~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~----~~~l 820 (929)
..|.++-+.+.....-+. +-+. . +..-..+......++++.+.+... .|..... ....
T Consensus 700 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 776 (932)
T PRK13184 700 DLGNWEFFSQFSDILAEVSDEITFTESIVEQKVEELMFFLKGLEALSNKEDYEKAFKHLDNT---DPTLILYAFDLFAIQ 776 (932)
T ss_pred HhccHHHHHHHHHHHHHHhhhccchHHHHhhhHHHHHHHHHHHHHHHccccHHHHHhhhhhC---CHHHHHHHHHHHHHH
Confidence 788877665544333211 1111 1 111122333444566665433222 2211111 1111
Q ss_pred hhh-CC---HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHh---cCCCchHHHHHHHHHHHcCCH
Q 002379 821 SEY-SD---REMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIA---FKPDLQMLHLRAAFYESIGDL 893 (929)
Q Consensus 821 g~~-g~---~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~---~~p~~~~~~~la~~~~~~g~~ 893 (929)
+.. ++ .-.+++.+++...-.............+|.-..++++|-+.+...-. .+..++...+.|..+...++.
T Consensus 777 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 856 (932)
T PRK13184 777 ALLDEEGESIIQLLQLIYDYVSEEERHDHLLVYEIQAHLWNRDLKKAYKLLNRYPLDLLLDEYSEAFVLYGCYLALTEDR 856 (932)
T ss_pred HHHhccchHHHHHHHHHHhccCChhhhhhhhHHHHHHHHHhccHHHHHHHHHhCChhhhccccchHHHHHHHHHHhcCch
Confidence 111 11 12222222222111112233444566677788899999888843211 111223333558888888999
Q ss_pred HHHHHHHHHHh
Q 002379 894 TSAIRDSQAAL 904 (929)
Q Consensus 894 ~~A~~~~~~al 904 (929)
+-|...|....
T Consensus 857 ~~~~~~~~~~~ 867 (932)
T PRK13184 857 EAAKAHFSGCR 867 (932)
T ss_pred hHHHHHHhhcc
Confidence 99999998877
No 315
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.83 E-value=1.5 Score=44.80 Aligned_cols=223 Identities=10% Similarity=0.023 Sum_probs=128.4
Q ss_pred hhHHHHHHHHHHhcCCCCh----HHHHHHHHHHHHhCCHHHHHHHHHHHhcccC-------CHhHHHHHHHHHHHhccHH
Q 002379 497 GREKIVDLNYASELDPTLS----FPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-------SVDCLELRAWLFIAADDYE 565 (929)
Q Consensus 497 ~~~Ai~~~~kal~l~P~~~----~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~-------~~~~~~~~a~~~~~~g~~~ 565 (929)
.++|+..|++++++.|... .++...-.+.+++++|++-+..|.+.+..-. +..+...+-..-....+.+
T Consensus 43 p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~ 122 (440)
T KOG1464|consen 43 PKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMD 122 (440)
T ss_pred HHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhH
Confidence 3489999999999998765 3666777889999999999999888763221 1111221111111222333
Q ss_pred HHHHHHHH---HHhhcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhc-cccccccccHHHHHHHHhcCCCChH
Q 002379 566 SALRDTLA---LLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDR-WSSVDDIGSLAVINQMLINDPGKSF 641 (929)
Q Consensus 566 ~A~~~~~~---al~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~-~~~~~~~~~l~~~~~al~~~p~~~~ 641 (929)
--...|+. +++-..+...|+ ....-+|.++...+.|.+-...++.... ....+.. .-.+....-..
T Consensus 123 LLQ~FYeTTL~ALkdAKNeRLWF---KTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGe-------dD~kKGtQLLE 192 (440)
T KOG1464|consen 123 LLQEFYETTLDALKDAKNERLWF---KTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGE-------DDQKKGTQLLE 192 (440)
T ss_pred HHHHHHHHHHHHHHhhhcceeee---eccchHhhhheeHHHHHHHHHHHHHHHHHhccccCc-------hhhhccchhhh
Confidence 33333433 333333333332 3445577788777777666444422110 0000000 00000111123
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCch--HHHHHH----HHHHHHHcCCHHHHHHHHHHHHhhccch--------
Q 002379 642 LRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE--HERLVY----EGWILYDTGHREEALSRAEKSISIERTF-------- 707 (929)
Q Consensus 642 ~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~--~~~~~~----lg~~~~~~g~~~eA~~~~~~al~~~p~~-------- 707 (929)
+|..--..|..+.+..+-...|++++.+...- |.+.-- =|..+.+.|++++|-..|-.|++.....
T Consensus 193 iYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttC 272 (440)
T KOG1464|consen 193 IYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTC 272 (440)
T ss_pred hHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHH
Confidence 44445567788888888888999998765433 322222 2667889999999999998888764222
Q ss_pred HHHHHHHHHHHhcCCCCCChHH
Q 002379 708 EAFFLKAYILADTNLDPESSTY 729 (929)
Q Consensus 708 ~~~~~l~~~l~~~~~~~~~~~~ 729 (929)
--|..++..+...+++|-+...
T Consensus 273 LKYLVLANMLmkS~iNPFDsQE 294 (440)
T KOG1464|consen 273 LKYLVLANMLMKSGINPFDSQE 294 (440)
T ss_pred HHHHHHHHHHHHcCCCCCcccc
Confidence 3456677777788777655443
No 316
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=94.76 E-value=0.042 Score=37.08 Aligned_cols=31 Identities=23% Similarity=0.118 Sum_probs=15.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 002379 846 PYRYRAAVLMDDQKEVEAVEELSKAIAFKPD 876 (929)
Q Consensus 846 ~~~~la~~~~~~g~~~eA~~~l~kal~~~p~ 876 (929)
+++.+|.++...|++++|++.|+++++..|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 3444555555555555555555555554443
No 317
>smart00875 BACK BTB And C-terminal Kelch. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues.
Probab=94.73 E-value=0.028 Score=49.74 Aligned_cols=40 Identities=10% Similarity=0.162 Sum_probs=37.4
Q ss_pred HHHHHHHHHHhChHHHHHHHHHHHHhchhhhcCccchhhh
Q 002379 324 ALILIDYGLEERATLLVASCLQVLLRELPSSLYNPKVMKI 363 (929)
Q Consensus 324 ~~~~~~~a~~~~~~~L~~~c~~~i~~~~~~v~~~~~f~~L 363 (929)
|+.++.+|..|+++.|.+.|.+||.+||..+.++++|.+|
T Consensus 1 c~~i~~~a~~~~~~~L~~~~~~~i~~nf~~~~~~~~f~~L 40 (101)
T smart00875 1 CLGIRRFAELYGLEELLEKALRFILKNFLEVAQSEEFLEL 40 (101)
T ss_pred CHhHHHHHHHhChHHHHHHHHHHHHHHHHHHhcCcHHhcC
Confidence 5788999999999999999999999999999999999876
No 318
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=94.54 E-value=0.64 Score=47.38 Aligned_cols=95 Identities=18% Similarity=0.262 Sum_probs=67.3
Q ss_pred hcCHHHHHHHHHHHHhc----C-C--chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHHHHHhcCCCCC
Q 002379 653 LNCQKAAMRCLRLARNH----S-S--SEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPE 725 (929)
Q Consensus 653 ~g~~~~A~~~l~~al~~----~-p--~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~l~~~l~~~~~~~~ 725 (929)
...+++|++.|.-|+-. . + .-+..+..+||+|...|+.+.....+++|+.
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~----------------------- 146 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALE----------------------- 146 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHH-----------------------
Confidence 34567777777666532 1 1 2256788899999999998888888877776
Q ss_pred ChHHHHHHHHHHhhchhc---cCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC
Q 002379 726 SSTYVIQLLEEALRCPSD---GLRKGQALNNLGSIYVECGKLDQAENCYINALDI 777 (929)
Q Consensus 726 ~~~~a~~~~e~Al~~~~~---al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~ 777 (929)
.|++|.+.-.. .+......+.+|.+..+.|++++|..+|.+++..
T Consensus 147 -------~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 147 -------FYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred -------HHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 33333332222 1223467888999999999999999999999987
No 319
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=94.54 E-value=1.5 Score=48.72 Aligned_cols=94 Identities=14% Similarity=0.076 Sum_probs=66.4
Q ss_pred HHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhc---------c-----cC-------------CHhH---HHHHHH
Q 002379 507 ASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIV---------F-----KL-------------SVDC---LELRAW 556 (929)
Q Consensus 507 al~l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~---------~-----~~-------------~~~~---~~~~a~ 556 (929)
.+..+|-...++..++.++..+|++..|...+++++- + +. |... ++....
T Consensus 32 ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~ 111 (360)
T PF04910_consen 32 LLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQ 111 (360)
T ss_pred HHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHH
Confidence 3567899999999999999999999999999988862 1 11 1011 333445
Q ss_pred HHHHhccHHHHHHHHHHHHhhcCC-chhhhccccHHHHHHHHHHhhcccc
Q 002379 557 LFIAADDYESALRDTLALLALESN-YMMFHGRVSGDHLVKLLNHHVRSWS 605 (929)
Q Consensus 557 ~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~a~~ll~~~~~~~~~~~ 605 (929)
...+.|-+..|.+..+-.+.++|. |+. .++..+.......++|+
T Consensus 112 ~L~~RG~~rTAlE~~KlLlsLdp~~DP~-----g~ll~ID~~ALrs~~y~ 156 (360)
T PF04910_consen 112 SLGRRGCWRTALEWCKLLLSLDPDEDPL-----GVLLFIDYYALRSRQYQ 156 (360)
T ss_pred HHHhcCcHHHHHHHHHHHHhcCCCCCcc-----hhHHHHHHHHHhcCCHH
Confidence 556789999999999999999999 661 23333444444444544
No 320
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.40 E-value=5.5 Score=45.16 Aligned_cols=81 Identities=20% Similarity=0.085 Sum_probs=65.5
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccC---CHhHHHHHHHHHHHhccHHHHHHHHHHH
Q 002379 498 REKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL---SVDCLELRAWLFIAADDYESALRDTLAL 574 (929)
Q Consensus 498 ~~Ai~~~~kal~l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~---~~~~~~~~a~~~~~~g~~~~A~~~~~~a 574 (929)
+...+.+.......|+++...+..|..+...|+.+.|+..++..+.... ..-+++.+|+++..+.+|..|-..+...
T Consensus 250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L 329 (546)
T KOG3783|consen 250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIPIRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLL 329 (546)
T ss_pred HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 4455566667778999999999999999999998889999988885111 3445889999999999999999999988
Q ss_pred Hhhc
Q 002379 575 LALE 578 (929)
Q Consensus 575 l~~~ 578 (929)
.+..
T Consensus 330 ~des 333 (546)
T KOG3783|consen 330 RDES 333 (546)
T ss_pred Hhhh
Confidence 7664
No 321
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=94.26 E-value=0.17 Score=38.52 Aligned_cols=34 Identities=35% Similarity=0.367 Sum_probs=28.8
Q ss_pred hHHHHHHHHHHHhccHHHHHHHHHHHHhhcCCch
Q 002379 549 DCLELRAWLFIAADDYESALRDTLALLALESNYM 582 (929)
Q Consensus 549 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~ 582 (929)
++++.++..++++|+|++|....+.+++..|++.
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~ 35 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNR 35 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-H
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcH
Confidence 5677888999999999999999999999999998
No 322
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.97 E-value=1 Score=43.12 Aligned_cols=31 Identities=6% Similarity=-0.082 Sum_probs=16.8
Q ss_pred CCcHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 002379 842 LRTYPYRYRAAVLMDDQKEVEAVEELSKAIA 872 (929)
Q Consensus 842 ~~~~~~~~la~~~~~~g~~~eA~~~l~kal~ 872 (929)
-...+.-.||..-++.|++.+|...|.+...
T Consensus 165 mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 165 MRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred hHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 3344444555555556666666666655544
No 323
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=93.94 E-value=4.4 Score=44.82 Aligned_cols=38 Identities=13% Similarity=0.146 Sum_probs=29.2
Q ss_pred cCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHhhhhhh
Q 002379 890 IGDLTSAIRDSQAALCLDPNHMETLDLYNRARDQASHQ 927 (929)
Q Consensus 890 ~g~~~~A~~~~~~al~l~P~~~~a~~~~~~l~~~~~~~ 927 (929)
.|+.++|+..+-..-.+.|+-......+.++-.+-++.
T Consensus 711 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 748 (831)
T PRK15180 711 EGRLDEALSVLISLKRIEPDVSRLMREYKQIIRLFNES 748 (831)
T ss_pred cccHHHHHHHHHhhhccCccHHHHHHHHHHHHHHhhhh
Confidence 47889999998888889999887777777766554443
No 324
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.86 E-value=1.9 Score=41.19 Aligned_cols=80 Identities=21% Similarity=0.132 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch-HHHHHHHHHHHhc
Q 002379 642 LRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADT 720 (929)
Q Consensus 642 ~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~~~~~l~~~l~~~ 720 (929)
.+......-...++.+++...+....-+.|..++.-..-|+++...|++.+|+..++.+..-.|.. -..-.++.+|...
T Consensus 12 gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~ 91 (160)
T PF09613_consen 12 GLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYAL 91 (160)
T ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHc
Confidence 445556666777899999999999999999999999999999999999999999999988877776 4555556666555
Q ss_pred C
Q 002379 721 N 721 (929)
Q Consensus 721 ~ 721 (929)
+
T Consensus 92 ~ 92 (160)
T PF09613_consen 92 G 92 (160)
T ss_pred C
Confidence 4
No 325
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=93.83 E-value=0.17 Score=52.26 Aligned_cols=74 Identities=16% Similarity=0.012 Sum_probs=64.9
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch-HHHHHHHHH
Q 002379 643 RFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYI 716 (929)
Q Consensus 643 ~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~~~~~l~~~ 716 (929)
-...+.-..+.|+.++|...|+.|+.+.|++++++..+|......++.-+|-.+|-+|+.+.|.+ ++..+.+..
T Consensus 119 Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT 193 (472)
T KOG3824|consen 119 ALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRART 193 (472)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence 34555666788999999999999999999999999999999999999999999999999999999 776655443
No 326
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=93.33 E-value=0.66 Score=39.99 Aligned_cols=72 Identities=15% Similarity=0.024 Sum_probs=43.2
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCch--HHHHHHHHHHHHHcCCHHHHHHHH
Q 002379 626 LAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE--HERLVYEGWILYDTGHREEALSRA 697 (929)
Q Consensus 626 l~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~--~~~~~~lg~~~~~~g~~~eA~~~~ 697 (929)
+..+++.++.+|++..+.+.++..+...|++++|+..+-.+++.+++. ..+...+-.++...|.-+.-...|
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~ 81 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEY 81 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHH
Confidence 455577777788888888888888888888888888887777776654 334444444444444433333333
No 327
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]
Probab=93.27 E-value=0.83 Score=40.74 Aligned_cols=101 Identities=17% Similarity=0.115 Sum_probs=72.9
Q ss_pred EEEE-EcCeEEEeehhHHhccCHHHHHHhcCCCCcCCCCeeEecCCCCCHHHHHHHhhhHccC--CCCC-----------
Q 002379 220 VTFC-VRDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRTS--RVDL----------- 285 (929)
Q Consensus 220 v~~~-v~~~~~~~hr~iLaa~S~~F~~mf~~~~~e~~~~~i~~~~~~~~~~~~~~~l~~~Yt~--~~~~----------- 285 (929)
|.++ ++|+.|.+.+. +|-||--.+.|+.. +.++.- .|.. ++|+..+|+.+++|+-.. ++.+
T Consensus 4 i~l~s~dge~F~vd~~-iAerSiLikN~l~d-~~~~n~-p~p~--pnVrSsvl~kv~ew~ehh~~s~sede~d~~~rks~ 78 (158)
T COG5201 4 IELESIDGEIFRVDEN-IAERSILIKNMLCD-STACNY-PIPA--PNVRSSVLMKVQEWMEHHTSSLSEDENDLEIRKSK 78 (158)
T ss_pred eEEEecCCcEEEehHH-HHHHHHHHHHHhcc-ccccCC-CCcc--cchhHHHHHHHHHHHHhccccCCCccChHhhhccC
Confidence 4444 46777776554 57888888888752 333322 2444 899999999999999533 3221
Q ss_pred -----------CChhHHHHHHHHhchhChHhHHHHHHHHHHhhcC--ChhhHH
Q 002379 286 -----------FCPGIVLELLSFANRFCCEEMKSACDAHLASLVG--DIEDAL 325 (929)
Q Consensus 286 -----------~~~~~~~~ll~~A~~~~~~~l~~~C~~~l~~~~~--~~~n~~ 325 (929)
++.++++++.-+||.+.+..|.+.|+..+.+.+. |++...
T Consensus 79 p~D~wdr~Fm~vDqemL~eI~laaNYL~ikpLLd~gCKivaemirgkSpeeir 131 (158)
T COG5201 79 PSDFWDRFFMEVDQEMLLEICLAANYLEIKPLLDLGCKIVAEMIRGKSPEEIR 131 (158)
T ss_pred CccHHHHHHHHhhHHHHHHHHHhhccccchHHHHHHHHHHHHHHccCCHHHHH
Confidence 3447899999999999999999999999999887 344443
No 328
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=93.26 E-value=1.4 Score=39.28 Aligned_cols=63 Identities=17% Similarity=0.171 Sum_probs=46.0
Q ss_pred cHHHHHHHHHHHhcCCHHHHHHHHHHHH-------hcCCCchHH-----HHHHHHHHHcCCHHHHHHHHHHHhcc
Q 002379 844 TYPYRYRAAVLMDDQKEVEAVEELSKAI-------AFKPDLQML-----HLRAAFYESIGDLTSAIRDSQAALCL 906 (929)
Q Consensus 844 ~~~~~~la~~~~~~g~~~eA~~~l~kal-------~~~p~~~~~-----~~la~~~~~~g~~~~A~~~~~~al~l 906 (929)
+..+-.|+..+..+|+|++++..-.+++ +++.+.... +.+|..+..+|..++|+..|+.+-++
T Consensus 55 A~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 55 AFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 4456678888899999998887777776 455555433 26799999999999999999998654
No 329
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=93.16 E-value=17 Score=40.37 Aligned_cols=380 Identities=12% Similarity=-0.015 Sum_probs=196.5
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccC-CHhHHHHHHHHHHHhccHHHHHHHHHHHHhhcCCc
Q 002379 503 DLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLALLALESNY 581 (929)
Q Consensus 503 ~~~kal~l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~ 581 (929)
.++.-++-+|++...|+.+-.-+..+|.+++-.+.|++...--| -+.++...-.--+..+++......|-+.+...-+-
T Consensus 30 rLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~l 109 (660)
T COG5107 30 RLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLNL 109 (660)
T ss_pred HHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhccH
Confidence 56677888999999999999999999999999999999984333 23333322222344467777777777777643332
Q ss_pred hhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHH---hcCCCChHHHHHHHHHHHH------
Q 002379 582 MMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQML---INDPGKSFLRFRQSLLLLR------ 652 (929)
Q Consensus 582 ~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al---~~~p~~~~~~~~lg~~~~~------ 652 (929)
..|. ..+..+... ...-+..... .-.++|+-.+ -.+|.....|...+..+..
T Consensus 110 dLW~------lYl~YIRr~-n~~~tGq~r~------------~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~k 170 (660)
T COG5107 110 DLWM------LYLEYIRRV-NNLITGQKRF------------KIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGK 170 (660)
T ss_pred hHHH------HHHHHHHhh-Ccccccchhh------------hhHHHHHHHHhcccccccccchHHHHHHHHHhcccccc
Confidence 2110 011111111 1110000000 0022223222 3467777777777766542
Q ss_pred ---hcCHHHHHHHHHHHHhcCCchHH-HHHHH---------HHHHHHcC----CHHHHHHHHHHHHhhc-------cch-
Q 002379 653 ---LNCQKAAMRCLRLARNHSSSEHE-RLVYE---------GWILYDTG----HREEALSRAEKSISIE-------RTF- 707 (929)
Q Consensus 653 ---~g~~~~A~~~l~~al~~~p~~~~-~~~~l---------g~~~~~~g----~~~eA~~~~~~al~~~-------p~~- 707 (929)
+.+.+.-...|.+|+..--++.+ .|... ..+-.-.| -|-.|...|++...+- |-+
T Consensus 171 wEeQqrid~iR~~Y~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~ 250 (660)
T COG5107 171 WEEQQRIDKIRNGYMRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINL 250 (660)
T ss_pred HHHHHHHHHHHHHHHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhh
Confidence 34455666778888765443322 22111 11111111 2455666666554332 211
Q ss_pred -----------HHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCc----hhHHHHHHHHHHHHcCCHHHHHHHHH
Q 002379 708 -----------EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLR----KGQALNNLGSIYVECGKLDQAENCYI 772 (929)
Q Consensus 708 -----------~~~~~l~~~l~~~~~~~~~~~~a~~~~e~Al~~~~~al~----~~~a~~~lg~~~~~~g~~~eA~~~~~ 772 (929)
..|.+....-...+++.+...... +---.+++++. .++.|+.-...+...++-+.|+...+
T Consensus 251 Rt~nK~~r~s~S~WlNwIkwE~en~l~L~~~~~~q----Ri~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~ 326 (660)
T COG5107 251 RTANKAARTSDSNWLNWIKWEMENGLKLGGRPHEQ----RIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVE 326 (660)
T ss_pred hhhccccccccchhhhHhhHhhcCCcccCCCcHHH----HHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 112222222222222222211100 00011122222 13666666666777788888888877
Q ss_pred HHHcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc---------------cCCH----HHHHHHh------------
Q 002379 773 NALDIKHTRAHQGLARVYYLKNELKAAYDEMTKLLEKA---------------QYSA----SAFEKRS------------ 821 (929)
Q Consensus 773 ~al~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~---------------p~~~----~~~~~lg------------ 821 (929)
+++...+. ....++..|...++-++-...|+++++.- .++. +....+-
T Consensus 327 rg~~~sps-L~~~lse~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N 405 (660)
T COG5107 327 RGIEMSPS-LTMFLSEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLN 405 (660)
T ss_pred hcccCCCc-hheeHHHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHH
Confidence 77776443 55566666666666555555555544210 0011 1111111
Q ss_pred ---hhCCHHHHHHHHHHHHhcCCCCcHHHHHHHH-HHHhcCCHHHHHHHHHHHHhcCCCchHHHHH-HHHHHHcCCHHHH
Q 002379 822 ---EYSDREMAKNDLNMATQLDPLRTYPYRYRAA-VLMDDQKEVEAVEELSKAIAFKPDLQMLHLR-AAFYESIGDLTSA 896 (929)
Q Consensus 822 ---~~g~~~~A~~~~~~al~l~p~~~~~~~~la~-~~~~~g~~~eA~~~l~kal~~~p~~~~~~~l-a~~~~~~g~~~~A 896 (929)
...-.+.|...|.++-+..-....++..-|. -+...|++.-|-..|+-.+...|+++.+... -..+...++-+.|
T Consensus 406 ~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~na 485 (660)
T COG5107 406 YVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENA 485 (660)
T ss_pred HHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHH
Confidence 1122355666666665543233333333332 2445677778888888877777777766533 4555667777777
Q ss_pred HHHHHHHhcc
Q 002379 897 IRDSQAALCL 906 (929)
Q Consensus 897 ~~~~~~al~l 906 (929)
...|++++..
T Consensus 486 raLFetsv~r 495 (660)
T COG5107 486 RALFETSVER 495 (660)
T ss_pred HHHHHHhHHH
Confidence 7777766543
No 330
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=93.15 E-value=0.93 Score=39.09 Aligned_cols=48 Identities=17% Similarity=0.087 Sum_probs=41.4
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccC
Q 002379 499 EKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL 546 (929)
Q Consensus 499 ~Ai~~~~kal~l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~ 546 (929)
..+..++++++.+|++..+.+.+|..+...|++++|+..+-.++..++
T Consensus 6 ~~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr 53 (90)
T PF14561_consen 6 PDIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDR 53 (90)
T ss_dssp HHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-T
T ss_pred ccHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence 356788999999999999999999999999999999999999997775
No 331
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.06 E-value=2.5 Score=39.63 Aligned_cols=105 Identities=17% Similarity=0.089 Sum_probs=80.7
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch-HHHHHHHHHHHhcCCC
Q 002379 645 RQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLD 723 (929)
Q Consensus 645 ~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~~~~~l~~~l~~~~~~ 723 (929)
.....-...++.+++...+....-+.|+.++.-..-|+++...|++.+|+..++...+-.+.. -..-.++.++...+
T Consensus 15 ~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~-- 92 (153)
T TIGR02561 15 EVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKG-- 92 (153)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcC--
Confidence 334444558899999999999999999999999999999999999999999999998877766 45555666666555
Q ss_pred CCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002379 724 PESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINAL 775 (929)
Q Consensus 724 ~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al 775 (929)
+..|...+......+...+|+...+...
T Consensus 93 ------------------------Dp~Wr~~A~~~le~~~~~~a~~Lv~al~ 120 (153)
T TIGR02561 93 ------------------------DAEWHVHADEVLARDADADAVALVRALL 120 (153)
T ss_pred ------------------------ChHHHHHHHHHHHhCCCHhHHHHHHHHh
Confidence 4456666666666677777766655444
No 332
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=93.04 E-value=0.51 Score=41.82 Aligned_cols=29 Identities=17% Similarity=0.308 Sum_probs=19.4
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHccCCHH
Q 002379 787 ARVYYLKNELKAAYDEMTKLLEKAQYSAS 815 (929)
Q Consensus 787 a~~~~~~g~~~~A~~~~~~al~~~p~~~~ 815 (929)
|..++..|++-+|++.++..+...+++..
T Consensus 3 A~~~~~rGnhiKAL~iied~i~~h~~~~~ 31 (111)
T PF04781_consen 3 AKDYFARGNHIKALEIIEDLISRHGEDES 31 (111)
T ss_pred HHHHHHccCHHHHHHHHHHHHHHccCCCc
Confidence 45566677777777777777776666554
No 333
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=93.02 E-value=0.16 Score=33.18 Aligned_cols=30 Identities=20% Similarity=0.177 Sum_probs=15.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 002379 846 PYRYRAAVLMDDQKEVEAVEELSKAIAFKP 875 (929)
Q Consensus 846 ~~~~la~~~~~~g~~~eA~~~l~kal~~~p 875 (929)
++..+|.++...|++++|+..++++++..|
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 344455555555555555555555554444
No 334
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.96 E-value=5.4 Score=40.93 Aligned_cols=216 Identities=11% Similarity=0.086 Sum_probs=116.8
Q ss_pred HhCCHHHHHHHHHHHhcccCC-H----hHHHHHHHHHHHhccHHHHHHHHHHHHhhcCCchhh-hccccHHHHHHHHHHh
Q 002379 527 EEGQIRAAISEIDRIIVFKLS-V----DCLELRAWLFIAADDYESALRDTLALLALESNYMMF-HGRVSGDHLVKLLNHH 600 (929)
Q Consensus 527 ~~g~~~~A~~~~~~al~~~~~-~----~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~-~~~~~a~~ll~~~~~~ 600 (929)
+..+.++|+..|++++++.+. . .++-....+++.+++|++-+..|.+.+..-.....- +..-.....+..+..
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiSt- 117 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYIST- 117 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhh-
Confidence 345889999999999988872 2 236667788899999999999999887642211100 000011111111110
Q ss_pred hcccchHHHHHHhhhccccccccccHHHHH---HHHhcCCCChHHH----HHHHHHHHHhcCHHHHHHHHHHHHhcC---
Q 002379 601 VRSWSPADCWIKLYDRWSSVDDIGSLAVIN---QMLINDPGKSFLR----FRQSLLLLRLNCQKAAMRCLRLARNHS--- 670 (929)
Q Consensus 601 ~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~---~al~~~p~~~~~~----~~lg~~~~~~g~~~~A~~~l~~al~~~--- 670 (929)
..+.+ ++ -..|+ .+++ +..+..+| ..+|.+|+..++|.+-.+.+++.-...
T Consensus 118 S~~m~----LL--------------Q~FYeTTL~ALk-dAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~e 178 (440)
T KOG1464|consen 118 SKNMD----LL--------------QEFYETTLDALK-DAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTE 178 (440)
T ss_pred hhhhH----HH--------------HHHHHHHHHHHH-hhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccc
Confidence 00000 01 00111 1222 22333444 368889999888887777776654321
Q ss_pred ---------CchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHHH---HHhcCCCCCChHHHHHHHHHHh
Q 002379 671 ---------SSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYI---LADTNLDPESSTYVIQLLEEAL 738 (929)
Q Consensus 671 ---------p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~l~~~---l~~~~~~~~~~~~a~~~~e~Al 738 (929)
..-.++|..--.+|-.+.+-.+-...|++++.+....+--..+|.+ =+...+..+....+..++=+|.
T Consensus 179 dGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAF 258 (440)
T KOG1464|consen 179 DGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAF 258 (440)
T ss_pred cCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHH
Confidence 1123455556677888888888888899998775332111112221 1223344555555555555666
Q ss_pred hchhccCchh----HHHHHHHHHHHHcC
Q 002379 739 RCPSDGLRKG----QALNNLGSIYVECG 762 (929)
Q Consensus 739 ~~~~~al~~~----~a~~~lg~~~~~~g 762 (929)
+.|..+-.|. --|..+++.+...|
T Consensus 259 KNYDEsGspRRttCLKYLVLANMLmkS~ 286 (440)
T KOG1464|consen 259 KNYDESGSPRRTTCLKYLVLANMLMKSG 286 (440)
T ss_pred hcccccCCcchhHHHHHHHHHHHHHHcC
Confidence 5555553321 33445555555443
No 335
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=92.80 E-value=19 Score=40.09 Aligned_cols=143 Identities=9% Similarity=-0.014 Sum_probs=85.4
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhcccCCH------hHHHHHHHHHHHhccHHHHHHHHHHHHhhcCCchhhhccccHH
Q 002379 518 YKYRAVAKMEEGQIRAAISEIDRIIVFKLSV------DCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGD 591 (929)
Q Consensus 518 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~------~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~ 591 (929)
....|-++.+++++.+|...|.++.+...+. +.+..+....+-+++.+.-....-..-+..|... -..
T Consensus 9 lc~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~------~l~ 82 (549)
T PF07079_consen 9 LCFQGFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSA------YLP 82 (549)
T ss_pred HHHhhHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCch------HHH
Confidence 4556888999999999999999997554432 2233333333445666665555555555666555 334
Q ss_pred HHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 002379 592 HLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNH 669 (929)
Q Consensus 592 ~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~ 669 (929)
...+.+....+.+++|...+ ..|.+.-....-...+.-+..--.+-..-...+.++...|++.++...+++.+..
T Consensus 83 LF~~L~~Y~~k~~~kal~~l---s~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~ 157 (549)
T PF07079_consen 83 LFKALVAYKQKEYRKALQAL---SVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIER 157 (549)
T ss_pred HHHHHHHHHhhhHHHHHHHH---HHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 45677778888999985444 4454431111100111111111112222335678889999999999999988753
No 336
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=92.52 E-value=0.17 Score=33.05 Aligned_cols=30 Identities=27% Similarity=0.325 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhcc
Q 002379 676 RLVYEGWILYDTGHREEALSRAEKSISIER 705 (929)
Q Consensus 676 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~p 705 (929)
++..+|.++...|++++|+..++++++++|
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 344555555555555555555555555444
No 337
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=92.41 E-value=27 Score=40.85 Aligned_cols=31 Identities=13% Similarity=0.095 Sum_probs=20.3
Q ss_pred cCCchHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002379 669 HSSSEHERLVYEGWILYDTGHREEALSRAEK 699 (929)
Q Consensus 669 ~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~ 699 (929)
.-|++.+.+-.+|.++...|--++|++.|-+
T Consensus 847 ~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 847 TLPEDSELLPVMADMFTSVGMCDQAVEAYLR 877 (1189)
T ss_pred hcCcccchHHHHHHHHHhhchHHHHHHHHHh
Confidence 3456666666677777777777777766643
No 338
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=92.30 E-value=1.3 Score=45.07 Aligned_cols=92 Identities=20% Similarity=0.027 Sum_probs=57.7
Q ss_pred CCHHHHHHHHHHHHcC------CC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHhhhCCHHHHHHH
Q 002379 762 GKLDQAENCYINALDI------KH---TRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKND 832 (929)
Q Consensus 762 g~~~eA~~~~~~al~~------~~---~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~g~~~~A~~~ 832 (929)
..+++|++.|.-|+-. .+ ...+..+|.+|...|+.+.....+++|++.
T Consensus 91 Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~----------------------- 147 (214)
T PF09986_consen 91 RTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEF----------------------- 147 (214)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHH-----------------------
Confidence 3456666666665533 11 246777888888888866666666555443
Q ss_pred HHHHHhcCC------CCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 002379 833 LNMATQLDP------LRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPD 876 (929)
Q Consensus 833 ~~~al~l~p------~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~ 876 (929)
|.++.+... +.....+.+|.+..+.|++++|+.+|.+++.....
T Consensus 148 y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~ 197 (214)
T PF09986_consen 148 YEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKA 197 (214)
T ss_pred HHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence 444443322 12345667788888888888888888887765433
No 339
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=92.03 E-value=1.6 Score=48.72 Aligned_cols=89 Identities=17% Similarity=0.032 Sum_probs=41.0
Q ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHH-HHHHHHcC-CHHHHHHHHHHHhccCC
Q 002379 831 NDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLHLR-AAFYESIG-DLTSAIRDSQAALCLDP 908 (929)
Q Consensus 831 ~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~l-a~~~~~~g-~~~~A~~~~~~al~l~P 908 (929)
..|+.|+...+.+...|........+.+.+.+--..|.+++..+|+++.++.. |...+.-+ +.+.|...|.++|..+|
T Consensus 92 ~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~np 171 (568)
T KOG2396|consen 92 FLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNP 171 (568)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCC
Confidence 34444444444444555444444444444555555555555555555444422 22222222 25555555555555555
Q ss_pred CCHHHHHHHHH
Q 002379 909 NHMETLDLYNR 919 (929)
Q Consensus 909 ~~~~a~~~~~~ 919 (929)
+++..|..+=+
T Consensus 172 dsp~Lw~eyfr 182 (568)
T KOG2396|consen 172 DSPKLWKEYFR 182 (568)
T ss_pred CChHHHHHHHH
Confidence 55555544433
No 340
>PRK10941 hypothetical protein; Provisional
Probab=92.01 E-value=1.2 Score=47.07 Aligned_cols=66 Identities=14% Similarity=-0.003 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch
Q 002379 642 LRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF 707 (929)
Q Consensus 642 ~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~ 707 (929)
...++-.+|.+.++++.|+++.+..+.+.|+++.-+...|.+|.++|.+..|...++..++..|+.
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~d 248 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPED 248 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCc
Confidence 345677789999999999999999999999999999999999999999999999999999999988
No 341
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=91.93 E-value=9.8 Score=41.66 Aligned_cols=82 Identities=15% Similarity=-0.096 Sum_probs=61.1
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHhCC------------HHHHHHHHHHHhcccC-CHhHHHHHHHHHHHhccHHHH
Q 002379 501 IVDLNYASELDPTLSFPYKYRAVAKMEEGQ------------IRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESA 567 (929)
Q Consensus 501 i~~~~kal~l~P~~~~a~~~~a~~~~~~g~------------~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~~g~~~~A 567 (929)
...|++.++.+|.+..+|..+....-..-. .+.-+..|++|++.+| +...+..+-....+..+-++.
T Consensus 5 ~~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l 84 (321)
T PF08424_consen 5 TAELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKL 84 (321)
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 456788889999999999888765544322 4566788999998877 444555555556667788888
Q ss_pred HHHHHHHHhhcCCch
Q 002379 568 LRDTLALLALESNYM 582 (929)
Q Consensus 568 ~~~~~~al~~~p~~~ 582 (929)
.+.+++++..+|++.
T Consensus 85 ~~~we~~l~~~~~~~ 99 (321)
T PF08424_consen 85 AKKWEELLFKNPGSP 99 (321)
T ss_pred HHHHHHHHHHCCCCh
Confidence 888999999999877
No 342
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=91.72 E-value=4.1 Score=36.48 Aligned_cols=101 Identities=16% Similarity=0.201 Sum_probs=63.1
Q ss_pred HHHHHHhCCHHHHHHHHHHHhcccC-------------CHhHHHHHHHHHHHhccHHHHHHHHHHHHhhcCCchhhhccc
Q 002379 522 AVAKMEEGQIRAAISEIDRIIVFKL-------------SVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRV 588 (929)
Q Consensus 522 a~~~~~~g~~~~A~~~~~~al~~~~-------------~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 588 (929)
|.-....|-|++|...+.++.+... +.-++..++..+..+|+|++++..-.++|.......
T Consensus 16 ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRG------ 89 (144)
T PF12968_consen 16 AERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRG------ 89 (144)
T ss_dssp HHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcc------
Confidence 3445567889999999988876543 223466677777888999998888777765321111
Q ss_pred cHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 002379 589 SGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARN 668 (929)
Q Consensus 589 ~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~ 668 (929)
.+ +-++...|+ .+.+.++..+..+|+.++|+..|+.+-+
T Consensus 90 -------EL-----~qdeGklWI-----------------------------aaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 90 -------EL-----HQDEGKLWI-----------------------------AAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp --------T-----TSTHHHHHH-----------------------------HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred -------cc-----ccccchhHH-----------------------------HHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 11 112222222 2456778888889999999999988765
Q ss_pred c
Q 002379 669 H 669 (929)
Q Consensus 669 ~ 669 (929)
+
T Consensus 129 M 129 (144)
T PF12968_consen 129 M 129 (144)
T ss_dssp H
T ss_pred H
Confidence 3
No 343
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=91.67 E-value=25 Score=39.01 Aligned_cols=280 Identities=15% Similarity=0.105 Sum_probs=136.6
Q ss_pred HHhhcchHHHHHHHHHHHhhHHHHhcccHHHHHHHHHHHHhcCccccHHHHHHHHHHhch-HHHHHHHHHhhh-----cc
Q 002379 407 RLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGHIYSLAGLARAKYKVGQ-QYSAYKLINSII-----SE 480 (929)
Q Consensus 407 ~l~~~~~~~~~~a~~~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~~~a~la~~~~~~g~-a~~a~~~~~~~~-----~~ 480 (929)
++.+...+++.....||+|-..+-.+|.+++-.+.|++...-.|....+. ..+..|+ +...+.....+. ..
T Consensus 30 rLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw---~ly~s~ELA~~df~svE~lf~rCL~k~ 106 (660)
T COG5107 30 RLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAW---RLYMSGELARKDFRSVESLFGRCLKKS 106 (660)
T ss_pred HHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHH---HHHhcchhhhhhHHHHHHHHHHHHhhh
Confidence 34444445556667899999999999999999999999988888777642 2222222 222222221111 11
Q ss_pred CCCchhhhHHHHH-----Hhhhh---HHHHHHHH---HHhcCCCChHHHHHHHHHHH---------HhCCHHHHHHHHHH
Q 002379 481 HKPTGWMYQERSL-----YNLGR---EKIVDLNY---ASELDPTLSFPYKYRAVAKM---------EEGQIRAAISEIDR 540 (929)
Q Consensus 481 ~~~~~~~~~~~~l-----~~~~~---~Ai~~~~k---al~l~P~~~~a~~~~a~~~~---------~~g~~~~A~~~~~~ 540 (929)
.....|+..-.-. ...|+ .-.+.|+- .+-.+|.....|-..+..+. ++.+.+.-...|.+
T Consensus 107 l~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~r 186 (660)
T COG5107 107 LNLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMR 186 (660)
T ss_pred ccHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHH
Confidence 2234444321111 11112 11223332 33357777777776665543 34455666677888
Q ss_pred HhcccC-CHhH-HH---------HHHHHH----HHhccHHHHHHHHHHHHhhcCCchhh--hccccHHHHHHHHHHhhcc
Q 002379 541 IIVFKL-SVDC-LE---------LRAWLF----IAADDYESALRDTLALLALESNYMMF--HGRVSGDHLVKLLNHHVRS 603 (929)
Q Consensus 541 al~~~~-~~~~-~~---------~~a~~~----~~~g~~~~A~~~~~~al~~~p~~~~~--~~~~~a~~ll~~~~~~~~~ 603 (929)
++.... +.+- |. +.+... -..--|..|...|++...+-..-... ... +...-... . .
T Consensus 187 al~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~-Rt~nK~~r--~---s 260 (660)
T COG5107 187 ALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINL-RTANKAAR--T---S 260 (660)
T ss_pred HHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhh-hhhccccc--c---c
Confidence 875432 1111 11 001110 11123455555555554432111100 000 00000000 0 0
Q ss_pred cchHHHHHHhhhccccccc--cc------c-HHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchH
Q 002379 604 WSPADCWIKLYDRWSSVDD--IG------S-LAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEH 674 (929)
Q Consensus 604 ~~~A~~~l~l~~~~~~~~~--~~------~-l~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~ 674 (929)
+..-..|+ .|...+. ++ . --++++++..-|-.+..|+.........++-+.|+...+++....|.
T Consensus 261 ~S~WlNwI----kwE~en~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps-- 334 (660)
T COG5107 261 DSNWLNWI----KWEMENGLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS-- 334 (660)
T ss_pred cchhhhHh----hHhhcCCcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc--
Confidence 00001111 1111110 00 0 22456666666777777777777777777777777777777666665
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002379 675 ERLVYEGWILYDTGHREEALSRAEKSIS 702 (929)
Q Consensus 675 ~~~~~lg~~~~~~g~~~eA~~~~~~al~ 702 (929)
..+.++..|...++-++-..+|+++++
T Consensus 335 -L~~~lse~yel~nd~e~v~~~fdk~~q 361 (660)
T COG5107 335 -LTMFLSEYYELVNDEEAVYGCFDKCTQ 361 (660)
T ss_pred -hheeHHHHHhhcccHHHHhhhHHHHHH
Confidence 555566666666666666666666553
No 344
>KOG1778 consensus CREB binding protein/P300 and related TAZ Zn-finger proteins [Transcription]
Probab=91.66 E-value=0.078 Score=56.63 Aligned_cols=141 Identities=14% Similarity=0.087 Sum_probs=113.6
Q ss_pred EEEEEcCeEEEeehhHHhccCHHHHHHhcCCCCcCCCCeeEecCCCCCHHHHHHHhhhHccCCCCC-CChhHHHHHHHHh
Q 002379 220 VTFCVRDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDL-FCPGIVLELLSFA 298 (929)
Q Consensus 220 v~~~v~~~~~~~hr~iLaa~S~~F~~mf~~~~~e~~~~~i~~~~~~~~~~~~~~~l~~~Yt~~~~~-~~~~~~~~ll~~A 298 (929)
++.......+++|+.+|..-|+.|..+....-.-+....+.+ -+++...+..+..|.|.+ ++. --......++.+.
T Consensus 29 ~~~~~~~~~~~~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~c~~~~~~~~~l~~~-~ek~e~~~~~ihll~~~ 105 (319)
T KOG1778|consen 29 EIVTDVKDLIPAHSLVLGPASPVFKKVLKQPCRKSLVKGNKI--LGVPCKAVNVFIRFLYSS-LEKHEMVFFDIHLLALS 105 (319)
T ss_pred hhhhhhhhhhHHHHhcccccchHHHHHHhhhcchhhhhccee--ecccccccchhhhhhccc-hhhhHHHHHHHHHHhhh
Confidence 444445677899999999999999998876633344456777 889999999999999988 541 1223456778888
Q ss_pred chhChHhHHHHHHHHHHhhcCChhhHHHHHHHHHHhChHHHHHHHHHHHHhchhhhcCccchhhh
Q 002379 299 NRFCCEEMKSACDAHLASLVGDIEDALILIDYGLEERATLLVASCLQVLLRELPSSLYNPKVMKI 363 (929)
Q Consensus 299 ~~~~~~~l~~~C~~~l~~~~~~~~n~~~~~~~a~~~~~~~L~~~c~~~i~~~~~~v~~~~~f~~L 363 (929)
..+-++.++..|...+...+.+..|++.++..+..+..+.|..++...|...|....+++.....
T Consensus 106 ~~~~v~~~~~d~~~~~~~~~~~~r~~flvl~~~~~~~~~~lr~a~hss~~~~~~~H~~t~~~~~~ 170 (319)
T KOG1778|consen 106 HVYVVPQPKADCDPILECGLFDKRNVFLVLQLAEHCDFSDLRRAKHSSIMLLFDLHLQTEKWFAY 170 (319)
T ss_pred hhhhccCccccCCccccchhhhhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcccCceee
Confidence 89999999999999998844449999999999999999999999999999999988887666544
No 345
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=91.39 E-value=0.33 Score=34.62 Aligned_cols=30 Identities=23% Similarity=0.275 Sum_probs=26.5
Q ss_pred HHHHHHhhHHHHhcccHHHHHHHHHHHHhc
Q 002379 419 MLALHQLGCVMFEREEYKDACYYFEAAADA 448 (929)
Q Consensus 419 a~~~~~lG~~~~~~g~y~~A~~~f~~al~~ 448 (929)
+.++..+|.+|..+|++++|+.++++++++
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 457889999999999999999999999986
No 346
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.05 E-value=4.9 Score=38.45 Aligned_cols=99 Identities=15% Similarity=0.056 Sum_probs=70.4
Q ss_pred hCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHH-HHHHHHHHcCCHHHHHHHHH
Q 002379 823 YSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLH-LRAAFYESIGDLTSAIRDSQ 901 (929)
Q Consensus 823 ~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~-~la~~~~~~g~~~~A~~~~~ 901 (929)
.++.+++...+...--+.|..+..-..-|++++..|+|.+|+..++.+.+..|..+... +++.|+..+||.+= ..+-+
T Consensus 23 ~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~W-r~~A~ 101 (160)
T PF09613_consen 23 LGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPSW-RRYAD 101 (160)
T ss_pred cCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChHH-HHHHH
Confidence 34666677777777777888888888889999999999999999999877777777665 56888888888652 22234
Q ss_pred HHhccCCCCHHHHHHHHHHHhh
Q 002379 902 AALCLDPNHMETLDLYNRARDQ 923 (929)
Q Consensus 902 ~al~l~P~~~~a~~~~~~l~~~ 923 (929)
.+++.+| ++++..+...+...
T Consensus 102 evle~~~-d~~a~~Lv~~Ll~~ 122 (160)
T PF09613_consen 102 EVLESGA-DPDARALVRALLAR 122 (160)
T ss_pred HHHhcCC-ChHHHHHHHHHHHh
Confidence 4555554 55666555555443
No 347
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=90.95 E-value=0.6 Score=39.03 Aligned_cols=52 Identities=13% Similarity=0.138 Sum_probs=38.5
Q ss_pred CChhHHHHHHHHhchhChHhHHHHHHHHHHhhcC--ChhhHHHHHHHHHHhChH
Q 002379 286 FCPGIVLELLSFANRFCCEEMKSACDAHLASLVG--DIEDALILIDYGLEERAT 337 (929)
Q Consensus 286 ~~~~~~~~ll~~A~~~~~~~l~~~C~~~l~~~~~--~~~n~~~~~~~a~~~~~~ 337 (929)
++.+.+.+|+.+|+.++|++|...|++.+...+. |++....++.+...+...
T Consensus 11 ~~~~~L~~l~~AA~yL~I~~L~~~~~~~iA~~i~gks~eeir~~fgi~~d~t~e 64 (78)
T PF01466_consen 11 VDNDELFDLLNAANYLDIKGLLDLCCKYIANMIKGKSPEEIRKYFGIENDLTPE 64 (78)
T ss_dssp S-HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-HHHHHHHHT---TSSHH
T ss_pred cCHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhcCCCHHHHHHHcCCCCCCCHH
Confidence 5778999999999999999999999999999986 566666666666555443
No 348
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=90.80 E-value=0.29 Score=51.86 Aligned_cols=85 Identities=13% Similarity=0.051 Sum_probs=63.1
Q ss_pred EEEEE-cCeEEEeehhHHhccCHHHHHHhcCCCCcCCCCeeEecCCCCCHHHHHHHhhhHccCCCCCCChhHHHHHHHHh
Q 002379 220 VTFCV-RDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFCPGIVLELLSFA 298 (929)
Q Consensus 220 v~~~v-~~~~~~~hr~iLaa~S~~F~~mf~~~~~e~~~~~i~~~~~~~~~~~~~~~l~~~Yt~~~~~~~~~~~~~ll~~A 298 (929)
++|.+ +|+.|.|||..|++||.+|..-+..-+. ...+|+= ..+-+.+|..++.|+|-+.-. +-++.-.+|++..
T Consensus 152 i~f~~q~g~~f~ahkfll~arSs~~~~k~v~~~~--~~heI~~--~~v~~~~f~~flk~lyl~~na-~~~~qynallsi~ 226 (516)
T KOG0511|consen 152 IDFLQQEGANFDAHKFLLEARSSNYFPKDVMFYV--QGHEIEA--HRVILSAFSPFLKQLYLNTNA-EWKDQYNALLSIE 226 (516)
T ss_pred hHHHhhccccccHHHHHHHhhhcccCchhhhhcc--ccCchhh--hhhhHhhhhHHHHHHHHhhhh-hhhhHHHHHHhhh
Confidence 77877 6889999999999999988655443221 1234544 577899999999999977333 4445557899999
Q ss_pred chhChHhHHHH
Q 002379 299 NRFCCEEMKSA 309 (929)
Q Consensus 299 ~~~~~~~l~~~ 309 (929)
.+|+++.|...
T Consensus 227 ~kF~~e~l~~~ 237 (516)
T KOG0511|consen 227 VKFSKEKLSLE 237 (516)
T ss_pred hhccHHHhHHH
Confidence 99998877643
No 349
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=90.66 E-value=5 Score=39.58 Aligned_cols=118 Identities=20% Similarity=0.214 Sum_probs=81.3
Q ss_pred HHHHHhhchhccCch---hHHHHHHHHHHHHcCCHHHHHHHHHHHHcCC-----CHHHHHHHHHHHHHhCCHHHHHHHHH
Q 002379 733 LLEEALRCPSDGLRK---GQALNNLGSIYVECGKLDQAENCYINALDIK-----HTRAHQGLARVYYLKNELKAAYDEMT 804 (929)
Q Consensus 733 ~~e~Al~~~~~al~~---~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~-----~~~a~~~la~~~~~~g~~~~A~~~~~ 804 (929)
.++.-++.++..+-+ ..++..+|..|...|++++|+++|.++.... ..+.+..+.++....+++........
T Consensus 18 ~Le~elk~~~~n~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ 97 (177)
T PF10602_consen 18 KLEAELKDAKSNLGKESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIE 97 (177)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 444444444443332 3778999999999999999999999988872 22678888999999999999988888
Q ss_pred HHHHHccCCHHHHHHHhhhCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 002379 805 KLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFK 874 (929)
Q Consensus 805 ~al~~~p~~~~~~~~lg~~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~ 874 (929)
++-.......+ |..+ ......-|..++..++|.+|.+.|-.+..-.
T Consensus 98 ka~~~~~~~~d-~~~~-----------------------nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 98 KAESLIEKGGD-WERR-----------------------NRLKVYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHhccch-HHHH-----------------------HHHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 87655332111 1111 1122345666777889999999887775443
No 350
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=90.62 E-value=1.3 Score=45.97 Aligned_cols=76 Identities=13% Similarity=0.121 Sum_probs=65.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCchH-HHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHhhh
Q 002379 849 YRAAVLMDDQKEVEAVEELSKAIAFKPDLQM-LHLRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNRARDQA 924 (929)
Q Consensus 849 ~la~~~~~~g~~~eA~~~l~kal~~~p~~~~-~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~l~~~~ 924 (929)
++=..+...++++.|....++.+.++|+++. +.-+|.+|.++|.+.-|++.++..++..|+.+.+..+..++.+..
T Consensus 186 ~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l~~l~ 262 (269)
T COG2912 186 NLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQLLELR 262 (269)
T ss_pred HHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHHHHHHH
Confidence 4445778888999999999999999998874 447899999999999999999999999999999888888887766
No 351
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=90.49 E-value=2.2 Score=39.13 Aligned_cols=68 Identities=21% Similarity=0.169 Sum_probs=56.1
Q ss_pred hHHHHHHHHHHHHhC---CHHHHHHHHHHHhc-ccC--CHhHHHHHHHHHHHhccHHHHHHHHHHHHhhcCCch
Q 002379 515 SFPYKYRAVAKMEEG---QIRAAISEIDRIIV-FKL--SVDCLELRAWLFIAADDYESALRDTLALLALESNYM 582 (929)
Q Consensus 515 ~~a~~~~a~~~~~~g---~~~~A~~~~~~al~-~~~--~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~ 582 (929)
....+++|.++.... +..+.+..++..++ ..| .-++.+.++..+++.++|+.++++.+..++..|++.
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~ 105 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNR 105 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcH
Confidence 456677788887654 46678889999986 333 566788899999999999999999999999999999
No 352
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=90.48 E-value=2.6 Score=37.46 Aligned_cols=45 Identities=18% Similarity=0.222 Sum_probs=24.7
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 002379 659 AMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISI 703 (929)
Q Consensus 659 A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~ 703 (929)
++++|.++..+.|..+..++.+|.-+-....|++++...++++.+
T Consensus 63 sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 63 SVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred hHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 445555555555555555555555555555555555555555543
No 353
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=90.34 E-value=0.84 Score=45.64 Aligned_cols=59 Identities=14% Similarity=0.030 Sum_probs=54.7
Q ss_pred HHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch
Q 002379 649 LLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF 707 (929)
Q Consensus 649 ~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~ 707 (929)
.....++.+.|.+.|.+++++.|+....|+.+|....+.|+++.|.+.|++.++++|++
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 34566889999999999999999999999999999999999999999999999999987
No 354
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=89.94 E-value=12 Score=41.21 Aligned_cols=99 Identities=11% Similarity=0.032 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcC--CHHHHHHHHHHHHhcCCCc-hHHHHHHHHHHH----cCCHHHHHH
Q 002379 826 REMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQ--KEVEAVEELSKAIAFKPDL-QMLHLRAAFYES----IGDLTSAIR 898 (929)
Q Consensus 826 ~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g--~~~eA~~~l~kal~~~p~~-~~~~~la~~~~~----~g~~~~A~~ 898 (929)
.++-+.....+++.+|+...+|+.+.+++.+.+ ++..=+..++++++.+|.+ ..|+.+-.+... .....+=++
T Consensus 91 ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ 170 (421)
T KOG0529|consen 91 LDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELE 170 (421)
T ss_pred hHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHH
Confidence 356677788899999999999999999999877 4788899999999999976 456544333322 233667788
Q ss_pred HHHHHhccCCCCHHHHHHHHHHHhhh
Q 002379 899 DSQAALCLDPNHMETLDLYNRARDQA 924 (929)
Q Consensus 899 ~~~~al~l~P~~~~a~~~~~~l~~~~ 924 (929)
+..+++.-++.|-.+|..+..+-...
T Consensus 171 ftt~~I~~nfSNYsaWhyRs~lL~~l 196 (421)
T KOG0529|consen 171 FTTKLINDNFSNYSAWHYRSLLLSTL 196 (421)
T ss_pred HHHHHHhccchhhhHHHHHHHHHHHh
Confidence 88999999999999999988876533
No 355
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=89.94 E-value=39 Score=38.24 Aligned_cols=85 Identities=9% Similarity=-0.130 Sum_probs=55.1
Q ss_pred CCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHH-HHHHH--HHcCCHHHHHHHHHHHhccCCCCHHHHHHH
Q 002379 841 PLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLHL-RAAFY--ESIGDLTSAIRDSQAALCLDPNHMETLDLY 917 (929)
Q Consensus 841 p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~-la~~~--~~~g~~~~A~~~~~~al~l~P~~~~a~~~~ 917 (929)
|+....-..+-..+.+.|-+.+|...|.+...+.|-+-.++. +-.+- ...-+...+..+|+.++.-...+++.|..|
T Consensus 457 ~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~~lw~~y 536 (568)
T KOG2396|consen 457 ADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADSDLWMDY 536 (568)
T ss_pred CceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCChHHHHHH
Confidence 334444445556677778888899998888777666655541 11111 112347788888888888777888888877
Q ss_pred HHHHhhhh
Q 002379 918 NRARDQAS 925 (929)
Q Consensus 918 ~~l~~~~~ 925 (929)
=..+...+
T Consensus 537 ~~~e~~~g 544 (568)
T KOG2396|consen 537 MKEELPLG 544 (568)
T ss_pred HHhhccCC
Confidence 66655433
No 356
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.69 E-value=20 Score=34.59 Aligned_cols=61 Identities=11% Similarity=0.042 Sum_probs=45.8
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcCCch--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc
Q 002379 645 RQSLLLLRLNCQKAAMRCLRLARNHSSSE--HERLVYEGWILYDTGHREEALSRAEKSISIER 705 (929)
Q Consensus 645 ~lg~~~~~~g~~~~A~~~l~~al~~~p~~--~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p 705 (929)
..+.-+...|+.++|+..|...-+..-.. .-+.+..|.+..+.|+-.+|+..|..+-.-.|
T Consensus 63 laAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~ 125 (221)
T COG4649 63 LAALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTS 125 (221)
T ss_pred HHHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCC
Confidence 34445566788899999998876655443 33556778999999999999999998876554
No 357
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=89.48 E-value=0.76 Score=45.95 Aligned_cols=57 Identities=18% Similarity=0.123 Sum_probs=39.6
Q ss_pred hhCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCch
Q 002379 822 EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQ 878 (929)
Q Consensus 822 ~~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~ 878 (929)
+.++.+.|.+.|.+++.+.|.....|+.+|....+.|+.+.|...|++.++++|.+.
T Consensus 7 ~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 7 ESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred ccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 446666677777777777777777777777777777777777777777777776653
No 358
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=89.22 E-value=35 Score=36.64 Aligned_cols=265 Identities=15% Similarity=0.081 Sum_probs=149.0
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhc--CCch--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc---cchHHH
Q 002379 644 FRQSLLLLRLNCQKAAMRCLRLARNH--SSSE--------HERLVYEGWILYDTGHREEALSRAEKSISIE---RTFEAF 710 (929)
Q Consensus 644 ~~lg~~~~~~g~~~~A~~~l~~al~~--~p~~--------~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~---p~~~~~ 710 (929)
+..+......+++++++..|...+.. .|.+ ......+|.+|.+.|+.++-....+..-..- +...+-
T Consensus 8 ~e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~Kakaa 87 (411)
T KOG1463|consen 8 LERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVSKAKAA 87 (411)
T ss_pred HHHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhhHHHH
Confidence 34455555666778888888888763 1211 2356778999999999877665554432211 111000
Q ss_pred HHHHHHHHh-cCCCCCChHHHHHHHHHHhhchhccCc---hhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC----CC---
Q 002379 711 FLKAYILAD-TNLDPESSTYVIQLLEEALRCPSDGLR---KGQALNNLGSIYVECGKLDQAENCYINALDI----KH--- 779 (929)
Q Consensus 711 ~~l~~~l~~-~~~~~~~~~~a~~~~e~Al~~~~~al~---~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~----~~--- 779 (929)
.+...+.+ ....++.....+....+.++...+--+ ....-..+..+|...++|.+|+......++. ++
T Consensus 88 -KlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekRtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~l 166 (411)
T KOG1463|consen 88 -KLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREKRTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKLDDKIL 166 (411)
T ss_pred -HHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccc
Confidence 01111111 112233333444455555544333221 1234456888999999999999887776644 22
Q ss_pred -HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc-----cCCHHH--HHHHh----hhCCHHHHHHHHHHHHhcCC---CCc
Q 002379 780 -TRAHQGLARVYYLKNELKAAYDEMTKLLEKA-----QYSASA--FEKRS----EYSDREMAKNDLNMATQLDP---LRT 844 (929)
Q Consensus 780 -~~a~~~la~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~--~~~lg----~~g~~~~A~~~~~~al~l~p---~~~ 844 (929)
.+.+..-..+|+...+..+|...+..+-... |....+ -..-| .-.||.-|..+|-+|++-.. +..
T Consensus 167 Lvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v 246 (411)
T KOG1463|consen 167 LVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDV 246 (411)
T ss_pred eeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHHhccceeecccccchHHHHHHHHHccccccCCcH
Confidence 2466667788888999999988887775432 111111 11112 23788899999998887433 122
Q ss_pred HHH---HHHHHHHHhcCCHHHHHHH--HHHHHhcCCCc-hHHHHHHHHHHH--cCCHHHHHHHHHHHhccCCC
Q 002379 845 YPY---RYRAAVLMDDQKEVEAVEE--LSKAIAFKPDL-QMLHLRAAFYES--IGDLTSAIRDSQAALCLDPN 909 (929)
Q Consensus 845 ~~~---~~la~~~~~~g~~~eA~~~--l~kal~~~p~~-~~~~~la~~~~~--~g~~~~A~~~~~~al~l~P~ 909 (929)
.+. .++-.+-...+..++--.. -+.+++..... ......|.++.. +.+++.|+..|+.=+.-||=
T Consensus 247 ~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~~D~i 319 (411)
T KOG1463|consen 247 KALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMKAVAEAFGNRSLKDFEKALADYKKELAEDPI 319 (411)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHHHHHHHhcCCcHHHHHHHHHHhHHHHhcChH
Confidence 332 2222233334455443333 33445533333 233344666654 56899999999998888773
No 359
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=88.72 E-value=13 Score=36.93 Aligned_cols=82 Identities=11% Similarity=0.052 Sum_probs=57.5
Q ss_pred HHHHHHHhhhCCHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc----hHHH-HHHHHH
Q 002379 814 ASAFEKRSEYSDREMAKNDLNMATQLDP-LRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDL----QMLH-LRAAFY 887 (929)
Q Consensus 814 ~~~~~~lg~~g~~~~A~~~~~~al~l~p-~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~----~~~~-~la~~~ 887 (929)
...|+.....|+ ++|...|-++-.... +.++..+.+|..|. ..+.++|+..+.+++++.+.+ +.++ .++.++
T Consensus 111 ~llYy~Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~ 188 (203)
T PF11207_consen 111 YLLYYHWSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIY 188 (203)
T ss_pred cHHHHHhhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Confidence 334555555555 456665555433222 67888888996555 688999999999999986544 3444 789999
Q ss_pred HHcCCHHHHH
Q 002379 888 ESIGDLTSAI 897 (929)
Q Consensus 888 ~~~g~~~~A~ 897 (929)
.++|+++.|-
T Consensus 189 ~~~~~~e~AY 198 (203)
T PF11207_consen 189 QKLKNYEQAY 198 (203)
T ss_pred HHhcchhhhh
Confidence 9999999885
No 360
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=88.32 E-value=0.96 Score=32.08 Aligned_cols=30 Identities=27% Similarity=0.227 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 002379 675 ERLVYEGWILYDTGHREEALSRAEKSISIE 704 (929)
Q Consensus 675 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~ 704 (929)
.++.++|.+|...|++++|+.++++++.+.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 467889999999999999999999998764
No 361
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=87.93 E-value=8.4 Score=44.19 Aligned_cols=118 Identities=17% Similarity=0.104 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHccCCHHHHHHH--h----hhCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHH-HH
Q 002379 799 AYDEMTKLLEKAQYSASAFEKR--S----EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSK-AI 871 (929)
Q Consensus 799 A~~~~~~al~~~p~~~~~~~~l--g----~~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~k-al 871 (929)
++..+..-+..++.++...... . ..++...+...+..++..+|.+..+..++|..+...|....+...+.. +.
T Consensus 50 ~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~ 129 (620)
T COG3914 50 AIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAE 129 (620)
T ss_pred HHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3333444444555555542222 2 345566677777777888888888888888877777766655555554 66
Q ss_pred hcCCCchHHH-------HHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHH
Q 002379 872 AFKPDLQMLH-------LRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDL 916 (929)
Q Consensus 872 ~~~p~~~~~~-------~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~ 916 (929)
...|++.... .++.....+|+..++....+++..+.|.++++...
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~ 181 (620)
T COG3914 130 WLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGA 181 (620)
T ss_pred hcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhH
Confidence 6777664322 23677777788888888888888888887665433
No 362
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=87.75 E-value=4.4 Score=40.02 Aligned_cols=96 Identities=14% Similarity=-0.024 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHhcccCCHh----HHHHHHHHHHHhccHHHHHHHHHHHHhhcCCchhhhccccHH
Q 002379 516 FPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVD----CLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGD 591 (929)
Q Consensus 516 ~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~----~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~ 591 (929)
.++..+|..|.+.|+++.|++.|.++.+...++. .+.....+.+..+++..+...+.++-........|..+.+..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 5788999999999999999999999886655443 366677777888999999999988876544432233332455
Q ss_pred HHHHHHHHhhcccchHHHHH
Q 002379 592 HLVKLLNHHVRSWSPADCWI 611 (929)
Q Consensus 592 ~ll~~~~~~~~~~~~A~~~l 611 (929)
...|+.....++|..|-..+
T Consensus 117 ~~~gL~~l~~r~f~~AA~~f 136 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELF 136 (177)
T ss_pred HHHHHHHHHhchHHHHHHHH
Confidence 56777777788888885554
No 363
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=87.59 E-value=23 Score=35.39 Aligned_cols=40 Identities=18% Similarity=0.210 Sum_probs=18.6
Q ss_pred hCCHHHHHHHHHHHhcccC-----CHhHHHHHHHHHHHhccHHHH
Q 002379 528 EGQIRAAISEIDRIIVFKL-----SVDCLELRAWLFIAADDYESA 567 (929)
Q Consensus 528 ~g~~~~A~~~~~~al~~~~-----~~~~~~~~a~~~~~~g~~~~A 567 (929)
..+.++|+..+.+++++.. +|+++..++.++..+|+++.|
T Consensus 153 krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 153 KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 3444445555544444322 444444445555544444443
No 364
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=87.56 E-value=26 Score=40.61 Aligned_cols=23 Identities=17% Similarity=0.079 Sum_probs=18.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHH
Q 002379 678 VYEGWILYDTGHREEALSRAEKS 700 (929)
Q Consensus 678 ~~lg~~~~~~g~~~eA~~~~~~a 700 (929)
..++.++.-.|++.||.+.|.+.
T Consensus 636 iLlA~~~Ay~gKF~EAAklFk~~ 658 (1081)
T KOG1538|consen 636 LLLADVFAYQGKFHEAAKLFKRS 658 (1081)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHc
Confidence 45788888889999999988764
No 365
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=87.47 E-value=1.4 Score=45.90 Aligned_cols=90 Identities=14% Similarity=-0.000 Sum_probs=70.0
Q ss_pred HHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHH--HHHHHHHcCCHHHHHHHHHHHhccCCC
Q 002379 832 DLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLHL--RAAFYESIGDLTSAIRDSQAALCLDPN 909 (929)
Q Consensus 832 ~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~--la~~~~~~g~~~~A~~~~~~al~l~P~ 909 (929)
.|.++....|.++..|...+....+.|-|.+--..|.++++.+|.+..++. -+.-+...++.+.+...|.+++.++|+
T Consensus 95 ~~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~ 174 (435)
T COG5191 95 ELYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSR 174 (435)
T ss_pred eeehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCC
Confidence 345555667788888888877777778888888888889999998876662 355566678999999999999999999
Q ss_pred CHHHHHHHHHHH
Q 002379 910 HMETLDLYNRAR 921 (929)
Q Consensus 910 ~~~a~~~~~~l~ 921 (929)
+|..|..+=+++
T Consensus 175 ~p~iw~eyfr~E 186 (435)
T COG5191 175 SPRIWIEYFRME 186 (435)
T ss_pred CchHHHHHHHHH
Confidence 998888776654
No 366
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.35 E-value=26 Score=40.24 Aligned_cols=148 Identities=15% Similarity=0.119 Sum_probs=97.1
Q ss_pred CCHHHHHHHHHHHHcC--------------CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-----c------------
Q 002379 762 GKLDQAENCYINALDI--------------KHTRAHQGLARVYYLKNELKAAYDEMTKLLEK-----A------------ 810 (929)
Q Consensus 762 g~~~eA~~~~~~al~~--------------~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~-----~------------ 810 (929)
..|++|...|.-++.. -|.+.+..++.+...+|+.+-|.+...+++-. .
T Consensus 252 ~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL 331 (665)
T KOG2422|consen 252 NSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRL 331 (665)
T ss_pred hHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccC
Confidence 3456666666666554 12357777788888888877777766666521 1
Q ss_pred ----cCCHHHHHH-------HhhhCCHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHH-hcCCHHHHHHHHHHH-----Hh
Q 002379 811 ----QYSASAFEK-------RSEYSDREMAKNDLNMATQLDPL-RTYPYRYRAAVLM-DDQKEVEAVEELSKA-----IA 872 (929)
Q Consensus 811 ----p~~~~~~~~-------lg~~g~~~~A~~~~~~al~l~p~-~~~~~~~la~~~~-~~g~~~eA~~~l~ka-----l~ 872 (929)
|.|-..|.. ++..|-+..|.+..+..++++|. ++.+...+-.+|. +..+|+=-|+.++.. +.
T Consensus 332 ~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~ 411 (665)
T KOG2422|consen 332 PYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLS 411 (665)
T ss_pred cccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHh
Confidence 222222221 22558889999999999999997 8888877777665 444565555555544 23
Q ss_pred cCCCchHHHHHHHHHHHcCC---HHHHHHHHHHHhccCCC
Q 002379 873 FKPDLQMLHLRAAFYESIGD---LTSAIRDSQAALCLDPN 909 (929)
Q Consensus 873 ~~p~~~~~~~la~~~~~~g~---~~~A~~~~~~al~l~P~ 909 (929)
.-|+...-..+|.+|..... ...|...+.+|+...|.
T Consensus 412 ~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P~ 451 (665)
T KOG2422|consen 412 QLPNFGYSLALARFFLRKNEEDDRQSALNALLQALKHHPL 451 (665)
T ss_pred hcCCchHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCcH
Confidence 33555444467888887665 67899999999999883
No 367
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=87.10 E-value=11 Score=40.10 Aligned_cols=94 Identities=22% Similarity=0.240 Sum_probs=66.0
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc---hHHH-HHHHHHHHcCCHHHHHHHHHHHhc
Q 002379 830 KNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDL---QMLH-LRAAFYESIGDLTSAIRDSQAALC 905 (929)
Q Consensus 830 ~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~---~~~~-~la~~~~~~g~~~~A~~~~~~al~ 905 (929)
...|.....+.| ++.+-.|.+.+.....-.+.++...+.... .|.. ..++ .+|..+.++|+.++|...|++++.
T Consensus 316 ~aLYdaL~~~ap-SPvV~LNRAVAla~~~Gp~agLa~ve~L~~-~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~ 393 (415)
T COG4941 316 DALYDALEQAAP-SPVVTLNRAVALAMREGPAAGLAMVEALLA-RPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIA 393 (415)
T ss_pred HHHHHHHHHhCC-CCeEeehHHHHHHHhhhHHhHHHHHHHhhc-ccccccccccHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 334444444445 445555666666665566777777665443 3332 2333 679999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHhhhh
Q 002379 906 LDPNHMETLDLYNRARDQAS 925 (929)
Q Consensus 906 l~P~~~~a~~~~~~l~~~~~ 925 (929)
+.++..+...++.++.....
T Consensus 394 La~~~aer~~l~~r~~~l~~ 413 (415)
T COG4941 394 LARNAAERAFLRQRLDRLAS 413 (415)
T ss_pred hcCChHHHHHHHHHHHHhhc
Confidence 99999999999988876654
No 368
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=86.62 E-value=3.3 Score=36.04 Aligned_cols=59 Identities=24% Similarity=0.149 Sum_probs=47.2
Q ss_pred HHHHhcCHHHHHHHHHHHHhcCCc---------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch
Q 002379 649 LLLRLNCQKAAMRCLRLARNHSSS---------EHERLVYEGWILYDTGHREEALSRAEKSISIERTF 707 (929)
Q Consensus 649 ~~~~~g~~~~A~~~l~~al~~~p~---------~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~ 707 (929)
...+.|+|.+|++.+.+.+..... ...+..++|.++...|++++|+..+++++++....
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~ 74 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAREN 74 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 346789999998888887754322 24567889999999999999999999999987655
No 369
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=85.79 E-value=2.5 Score=47.33 Aligned_cols=88 Identities=16% Similarity=0.071 Sum_probs=68.7
Q ss_pred HHhCCHHHHHHHHHHHHHHccCCHHHHHHHh-------hhCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHH
Q 002379 791 YLKNELKAAYDEMTKLLEKAQYSASAFEKRS-------EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEA 863 (929)
Q Consensus 791 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg-------~~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA 863 (929)
+..+....|+..|.+++...|.....+.+++ -.|+.-.|+.....|++++|....+++.|+.++...+++.+|
T Consensus 385 ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~ea 464 (758)
T KOG1310|consen 385 LYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEA 464 (758)
T ss_pred hhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHh
Confidence 3344566788888888888888777666655 346778888888888888888888888999988888999888
Q ss_pred HHHHHHHHhcCCCch
Q 002379 864 VEELSKAIAFKPDLQ 878 (929)
Q Consensus 864 ~~~l~kal~~~p~~~ 878 (929)
++....+....|.+.
T Consensus 465 l~~~~alq~~~Ptd~ 479 (758)
T KOG1310|consen 465 LSCHWALQMSFPTDV 479 (758)
T ss_pred hhhHHHHhhcCchhh
Confidence 888877776677554
No 370
>KOG2715 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=85.61 E-value=6.4 Score=37.15 Aligned_cols=100 Identities=9% Similarity=-0.066 Sum_probs=72.7
Q ss_pred CCCC-EEEEEcCeEEEeehhHHhccCHHHHHHhcCCCCcC----CCCeeEecCCCCCHHHHHHHhhhHccCCCCCCChhH
Q 002379 216 EDDS-VTFCVRDKEISFVRNKIASLSSPFKAMLYGGFVES----KRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFCPGI 290 (929)
Q Consensus 216 ~~~~-v~~~v~~~~~~~hr~iLaa~S~~F~~mf~~~~~e~----~~~~i~~~~~~~~~~~~~~~l~~~Yt~~~~~~~~~~ 290 (929)
+.+. |.|-|||..|-.-|.-|.--+.-|-.-|-.+-.+. +..---+ -|-+|.-|-.+|+|+..|++- ++.-.
T Consensus 18 g~s~wVRlNVGGt~f~TtktTl~rdp~sFl~rl~q~~~~l~sdrDetGAYl--IDRDP~~FgpvLNylRhgklv-l~~l~ 94 (210)
T KOG2715|consen 18 GVSLWVRLNVGGTVFLTTKTTLPRDPKSFLYRLCQREKDLPSDRDETGAYL--IDRDPFYFGPVLNYLRHGKLV-LNKLS 94 (210)
T ss_pred CceEEEEEecCCEEEEeeeeccccCcHHHHHHHHhcccCCCCCccccCceE--eccCcchHHHHHHHHhcchhh-hhhhh
Confidence 3344 99999999999999999888866766554322211 1112233 356899999999999999998 66523
Q ss_pred HHHHHHHhchhChHhHHHHHHHHHHhhc
Q 002379 291 VLELLSFANRFCCEEMKSACDAHLASLV 318 (929)
Q Consensus 291 ~~~ll~~A~~~~~~~l~~~C~~~l~~~~ 318 (929)
=..+|.-|++|.++.|.....+.+.+..
T Consensus 95 eeGvL~EAefyn~~~li~likd~i~dRd 122 (210)
T KOG2715|consen 95 EEGVLEEAEFYNDPSLIQLIKDRIQDRD 122 (210)
T ss_pred hhccchhhhccCChHHHHHHHHHHHHHh
Confidence 3358888999999999988777776654
No 371
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=85.45 E-value=4.7 Score=37.90 Aligned_cols=72 Identities=18% Similarity=0.062 Sum_probs=55.7
Q ss_pred hCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHH-HHHHHHHHcCCHH
Q 002379 823 YSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLH-LRAAFYESIGDLT 894 (929)
Q Consensus 823 ~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~-~la~~~~~~g~~~ 894 (929)
.++.+++...+...--+.|+.+..-..-|++++..|+|.+|+..++...+-.+..+... +++.|+..+||.+
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp~ 95 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDAE 95 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCChH
Confidence 45566666666666677788888888889999999999999999998887776666554 5588888887754
No 372
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=85.35 E-value=1.1 Score=31.53 Aligned_cols=29 Identities=24% Similarity=0.335 Sum_probs=26.7
Q ss_pred HHHHHhhHHHHhcccHHHHHHHHHHHHhc
Q 002379 420 LALHQLGCVMFEREEYKDACYYFEAAADA 448 (929)
Q Consensus 420 ~~~~~lG~~~~~~g~y~~A~~~f~~al~~ 448 (929)
.+|..||.+-+..++|++|+.-|++++++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 46788999999999999999999999986
No 373
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=85.32 E-value=1.1e+02 Score=38.38 Aligned_cols=87 Identities=15% Similarity=0.044 Sum_probs=69.5
Q ss_pred hhhHHHHHHHHHHhcCCCCh---HHHHHHHHHHHHh----C---CHHHHHHHHHHHhcccCCHhHHHHHHHHHHHhccHH
Q 002379 496 LGREKIVDLNYASELDPTLS---FPYKYRAVAKMEE----G---QIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYE 565 (929)
Q Consensus 496 ~~~~Ai~~~~kal~l~P~~~---~a~~~~a~~~~~~----g---~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~g~~~ 565 (929)
.++.|+..|++.-...|... ++.+..|..+..+ | .+++|+..|++.-.....|--|...|.+|..+|+|+
T Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 569 (932)
T PRK13184 490 LYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGGVGAPLEYLGKALVYQRLGEYN 569 (932)
T ss_pred HHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCCchHHHhHHHHHHHhhhHH
Confidence 44578888888888888655 4566777766543 2 588999999988655547777888999999999999
Q ss_pred HHHHHHHHHHhhcCCch
Q 002379 566 SALRDTLALLALESNYM 582 (929)
Q Consensus 566 ~A~~~~~~al~~~p~~~ 582 (929)
+-++.|.-+++..|+++
T Consensus 570 ~~~~~~~~~~~~~~~~~ 586 (932)
T PRK13184 570 EEIKSLLLALKRYSQHP 586 (932)
T ss_pred HHHHHHHHHHHhcCCCC
Confidence 99999999999999998
No 374
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=84.57 E-value=88 Score=36.52 Aligned_cols=99 Identities=18% Similarity=0.158 Sum_probs=57.3
Q ss_pred ChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHHHHH
Q 002379 639 KSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILA 718 (929)
Q Consensus 639 ~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~l~~~l~ 718 (929)
+-+.+...+..+.++..+.-|-+.|.+.-. .-.+..++.+.+++++|....++--+..| +.++..+..++
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD--------~ksiVqlHve~~~W~eAFalAe~hPe~~~--dVy~pyaqwLA 815 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLKMGD--------LKSLVQLHVETQRWDEAFALAEKHPEFKD--DVYMPYAQWLA 815 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHHhcc--------HHHHhhheeecccchHhHhhhhhCccccc--cccchHHHHhh
Confidence 334444555555555556666665555311 12345567778888888877766433333 45666666666
Q ss_pred hcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002379 719 DTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINAL 775 (929)
Q Consensus 719 ~~~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al 775 (929)
+.. ++++|-+ +|.+.|+-.+|...+++.-
T Consensus 816 E~D-----------rFeEAqk-----------------AfhkAGr~~EA~~vLeQLt 844 (1081)
T KOG1538|consen 816 END-----------RFEEAQK-----------------AFHKAGRQREAVQVLEQLT 844 (1081)
T ss_pred hhh-----------hHHHHHH-----------------HHHHhcchHHHHHHHHHhh
Confidence 665 6666664 4445566666666665543
No 375
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=83.05 E-value=4.4 Score=42.21 Aligned_cols=67 Identities=16% Similarity=0.195 Sum_probs=45.4
Q ss_pred HHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCch
Q 002379 594 VKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE 673 (929)
Q Consensus 594 l~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~ 673 (929)
+-..+...++|+.|.... ++.+..+|.++.-+...|.+|.++|.+..|+..++..++..|+.
T Consensus 187 lk~~~~~e~~~~~al~~~------------------~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~ 248 (269)
T COG2912 187 LKAALLRELQWELALRVA------------------ERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDD 248 (269)
T ss_pred HHHHHHHhhchHHHHHHH------------------HHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCc
Confidence 444445555666664444 77777777777777777777777777777777777777777776
Q ss_pred HHHHH
Q 002379 674 HERLV 678 (929)
Q Consensus 674 ~~~~~ 678 (929)
+.+-.
T Consensus 249 ~~a~~ 253 (269)
T COG2912 249 PIAEM 253 (269)
T ss_pred hHHHH
Confidence 65543
No 376
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=82.66 E-value=72 Score=34.04 Aligned_cols=126 Identities=10% Similarity=-0.078 Sum_probs=72.6
Q ss_pred CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHH
Q 002379 636 DPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAY 715 (929)
Q Consensus 636 ~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~l~~ 715 (929)
+.+....-+.+-....+..+..+-++....|++++|..+.++..++.-- .--..+|...++++++..... ++...
T Consensus 180 d~D~~r~e~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEE--a~Ti~~AE~l~k~ALka~e~~---yr~sq 254 (556)
T KOG3807|consen 180 DTDFLRPEDEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEEE--ATTIVDAERLFKQALKAGETI---YRQSQ 254 (556)
T ss_pred cccccChHHHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhh--hhhHHHHHHHHHHHHHHHHHH---HhhHH
Confidence 4444444455566667777888888888899999999888888776432 233567888888888654322 11111
Q ss_pred HHHhcCCCCCChHHHHHHHHHHhhchhccCc-hhHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCC
Q 002379 716 ILADTNLDPESSTYVIQLLEEALRCPSDGLR-KGQALNNLGSIYVECGKLDQAENCYINALDIKH 779 (929)
Q Consensus 716 ~l~~~~~~~~~~~~a~~~~e~Al~~~~~al~-~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~ 779 (929)
.....+ .-.+|.. ++-.. ....-..++.+..++|+..+|++.++...+..+
T Consensus 255 q~qh~~-----------~~~da~~--rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~p 306 (556)
T KOG3807|consen 255 QCQHQS-----------PQHEAQL--RRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFP 306 (556)
T ss_pred HHhhhc-----------cchhhhh--hcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcc
Confidence 111111 0000000 00000 013345677777888888888888777665533
No 377
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=82.55 E-value=6.2 Score=43.74 Aligned_cols=158 Identities=16% Similarity=0.095 Sum_probs=109.8
Q ss_pred HHhCCHHHHHHHHHHHhcccC-CHhHHHHHHHHHHHhccHHHHHHHHHHHHhhcCCchhhhccccHHHHHHHHHHhhccc
Q 002379 526 MEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSW 604 (929)
Q Consensus 526 ~~~g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~ll~~~~~~~~~~ 604 (929)
...|+...|-.....++...| .|+...+++.+...+|+|+.|...+..+-..-.... .+...+-.-....++|
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~------~~~~~~~r~~~~l~r~ 373 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTD------STLRCRLRSLHGLARW 373 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCc------hHHHHHHHhhhchhhH
Confidence 456888888888877877766 888899999999999999999887765544332222 4455555556777888
Q ss_pred chHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHH--HH
Q 002379 605 SPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYE--GW 682 (929)
Q Consensus 605 ~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~l--g~ 682 (929)
+.|.... .-++...-+++++..-.+.....+|-+++|...+++.+.++|.....|.+. ..
T Consensus 374 ~~a~s~a------------------~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~~~~~~ 435 (831)
T PRK15180 374 REALSTA------------------EMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVNFLSST 435 (831)
T ss_pred HHHHHHH------------------HHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccceeeeccc
Confidence 8885444 666776777777777777777888899999999999999988765444432 33
Q ss_pred HHHHcCC-HHHHHHHHHHHHhhccch
Q 002379 683 ILYDTGH-REEALSRAEKSISIERTF 707 (929)
Q Consensus 683 ~~~~~g~-~~eA~~~~~~al~~~p~~ 707 (929)
-|+..|+ +.+|...--+.-.++..+
T Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (831)
T PRK15180 436 QYFNDGNAFSEAFHAGIQSQRLNDTF 461 (831)
T ss_pred eeccCcchHHHHHHhhhhhhhhhHHH
Confidence 4555554 566655544444455544
No 378
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=82.19 E-value=70 Score=33.55 Aligned_cols=264 Identities=13% Similarity=0.024 Sum_probs=144.5
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCCc--------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch--HHHHHH
Q 002379 644 FRQSLLLLRLNCQKAAMRCLRLARNHSSS--------EHERLVYEGWILYDTGHREEALSRAEKSISIERTF--EAFFLK 713 (929)
Q Consensus 644 ~~lg~~~~~~g~~~~A~~~l~~al~~~p~--------~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~--~~~~~l 713 (929)
..++.-....+++++|+..|.+.+..... .......++.+|...|++..-.+.....-+.-.++ .-....
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Ki 86 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKI 86 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHH
Confidence 34566667778999999999999876321 13456788999999999766544443332222222 111111
Q ss_pred HHHHH-hcCCCCCChHHHHHHHHHHhhchhccCc---hhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC----C----CHH
Q 002379 714 AYILA-DTNLDPESSTYVIQLLEEALRCPSDGLR---KGQALNNLGSIYVECGKLDQAENCYINALDI----K----HTR 781 (929)
Q Consensus 714 ~~~l~-~~~~~~~~~~~a~~~~e~Al~~~~~al~---~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~----~----~~~ 781 (929)
...+. .-...+.+.+..+......++...+--+ ....-..+..+++..|+|.+|+....-.+.. + -..
T Consensus 87 irtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~ 166 (421)
T COG5159 87 IRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLIT 166 (421)
T ss_pred HHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceee
Confidence 22222 2233445555555555555544333222 1244556788899999999999887766543 2 225
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHc-----cCCHHHHHH--Hh----hhCCHHHHHHHHHHHHhcCC---CCcHHH
Q 002379 782 AHQGLARVYYLKNELKAAYDEMTKLLEKA-----QYSASAFEK--RS----EYSDREMAKNDLNMATQLDP---LRTYPY 847 (929)
Q Consensus 782 a~~~la~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~--lg----~~g~~~~A~~~~~~al~l~p---~~~~~~ 847 (929)
.+..-..+|....+..++...+..+-... |....+-.. -| .-.++.-|-.+|-++++-.. .+..+.
T Consensus 167 vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft~l~~d~kAc 246 (421)
T COG5159 167 VHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGFTLLKMDVKAC 246 (421)
T ss_pred hhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhccccccchHHHH
Confidence 67777888888888888877776665432 211111111 11 33577888888888876432 233333
Q ss_pred HH-----HHHHHHhcCCHHHHHHHHH--HHHhcCCCc-hHH-HHHHHHHHH--cCCHHHHHHHHHHHhccCCC
Q 002379 848 RY-----RAAVLMDDQKEVEAVEELS--KAIAFKPDL-QML-HLRAAFYES--IGDLTSAIRDSQAALCLDPN 909 (929)
Q Consensus 848 ~~-----la~~~~~~g~~~eA~~~l~--kal~~~p~~-~~~-~~la~~~~~--~g~~~~A~~~~~~al~l~P~ 909 (929)
.. +..+.. +..++-...++ ..++...+. ... ...+..+.. +.++..|+..|+.-+.-||-
T Consensus 247 ~sLkYmlLSkIMl--N~~~evk~vl~~K~t~~~y~~r~I~am~avaea~~NRsL~df~~aL~qY~~el~~D~~ 317 (421)
T COG5159 247 VSLKYMLLSKIML--NRREEVKAVLRNKNTLKHYDDRMIRAMLAVAEAFGNRSLKDFSDALAQYSDELHQDSF 317 (421)
T ss_pred HHHHHHHHHHHHH--hhHHHHHHHHccchhHhhhhhhhHHHHHHHHHHhCCCcHhhHHHHHHHhhHHhccCHH
Confidence 22 222222 22232222221 122211111 111 122444432 45788888888887776663
No 379
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.89 E-value=1.1e+02 Score=35.76 Aligned_cols=67 Identities=16% Similarity=0.021 Sum_probs=35.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCchH-------HHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHH
Q 002379 850 RAAVLMDDQKEVEAVEELSKAIAFKPDLQM-------LHLRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDL 916 (929)
Q Consensus 850 la~~~~~~g~~~eA~~~l~kal~~~p~~~~-------~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~ 916 (929)
-|.-.++..+|..+++.|...+..-|.+.. ...++.||..+.+.++|.++++.|-+.+|.++-....
T Consensus 360 ~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~ 433 (872)
T KOG4814|consen 360 TAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLL 433 (872)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHH
Confidence 344445555666666666665555554421 1134555666666666666666666666555544433
No 380
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=81.59 E-value=9.4 Score=31.64 Aligned_cols=61 Identities=20% Similarity=0.176 Sum_probs=48.6
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHH---HHHHHHHcCCHHHHHHHHHHHHhh
Q 002379 643 RFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVY---EGWILYDTGHREEALSRAEKSISI 703 (929)
Q Consensus 643 ~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~---lg~~~~~~g~~~eA~~~~~~al~~ 703 (929)
....|.-++..++.++|+..++++++..++.+..+.. +..+|...|+|.+++++.-+-+.+
T Consensus 9 ~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 9 QIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777788999999999999999998887665554 456788999999999887665554
No 381
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=81.57 E-value=43 Score=38.32 Aligned_cols=128 Identities=15% Similarity=0.003 Sum_probs=62.7
Q ss_pred HHHhCCHHHHHHHHHHHhcccC-CHhHHHHHHHHHHHhccHHHHHHHHHHHHhhcCCchhhhccccHHHHHHHHHHhhcc
Q 002379 525 KMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRS 603 (929)
Q Consensus 525 ~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~ll~~~~~~~~~ 603 (929)
....++++++.......--+.. .++.....+..+.+.|-++.|+...+ +|+. .-.+....|+
T Consensus 271 av~~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~-----D~~~------------rFeLAl~lg~ 333 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQFVT-----DPDH------------RFELALQLGN 333 (443)
T ss_dssp HHHTT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS------HHH------------HHHHHHHCT-
T ss_pred HHHcCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhcC-----ChHH------------HhHHHHhcCC
Confidence 3456777777666652111111 23445555666666777777765432 2211 1223344455
Q ss_pred cchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHH
Q 002379 604 WSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWI 683 (929)
Q Consensus 604 ~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~ 683 (929)
.+.|... ....+++..|..+|.....+|+++-|..+|+++- -+..+..+
T Consensus 334 L~~A~~~-----------------------a~~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~--------d~~~L~lL 382 (443)
T PF04053_consen 334 LDIALEI-----------------------AKELDDPEKWKQLGDEALRQGNIELAEECYQKAK--------DFSGLLLL 382 (443)
T ss_dssp HHHHHHH-----------------------CCCCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHH
T ss_pred HHHHHHH-----------------------HHhcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc--------CccccHHH
Confidence 5544111 1223456678888888888888888888877742 23445666
Q ss_pred HHHcCCHHHHHHHHHHH
Q 002379 684 LYDTGHREEALSRAEKS 700 (929)
Q Consensus 684 ~~~~g~~~eA~~~~~~a 700 (929)
|.-.|+.+.=.+..+.+
T Consensus 383 y~~~g~~~~L~kl~~~a 399 (443)
T PF04053_consen 383 YSSTGDREKLSKLAKIA 399 (443)
T ss_dssp HHHCT-HHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHH
Confidence 67777765444444433
No 382
>PRK11619 lytic murein transglycosylase; Provisional
Probab=81.21 E-value=1.4e+02 Score=36.25 Aligned_cols=134 Identities=11% Similarity=-0.023 Sum_probs=78.9
Q ss_pred HcCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHh--hhCCHHH---H-HH
Q 002379 760 ECGKLDQAENCYINALDI--KHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS--EYSDREM---A-KN 831 (929)
Q Consensus 760 ~~g~~~eA~~~~~~al~~--~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg--~~g~~~~---A-~~ 831 (929)
..++++.+...+...-.. ......+.+|+++...|+.++|...|+++.. +.+ .|-.++ .+|..-. . ..
T Consensus 324 ~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~--~~~--fYG~LAa~~Lg~~~~~~~~~~~ 399 (644)
T PRK11619 324 GTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ--QRG--FYPMVAAQRLGEEYPLKIDKAP 399 (644)
T ss_pred HccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc--CCC--cHHHHHHHHcCCCCCCCCCCCC
Confidence 556666665555553222 3456777788887778888888888888743 222 222222 2221100 0 00
Q ss_pred HHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002379 832 DLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLHLRAAFYESIGDLTSAIRDSQAA 903 (929)
Q Consensus 832 ~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~a 903 (929)
.-...+. .......+..+...|+..+|...+..++.. .+......++......|.++.|+....++
T Consensus 400 ~~~~~~~-----~~~~~~ra~~L~~~g~~~~a~~ew~~~~~~-~~~~~~~~la~~A~~~g~~~~ai~~~~~~ 465 (644)
T PRK11619 400 KPDSALT-----QGPEMARVRELMYWNMDNTARSEWANLVAS-RSKTEQAQLARYAFNQQWWDLSVQATIAG 465 (644)
T ss_pred chhhhhc-----cChHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCHHHHHHHHhhc
Confidence 0000111 123456677788889999999888888775 44555556677777888888887766544
No 383
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=81.12 E-value=4 Score=45.79 Aligned_cols=89 Identities=12% Similarity=-0.048 Sum_probs=63.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHccCCHHHHHHHh----hhCC
Q 002379 755 GSIYVECGKLDQAENCYINALDI--KHTRAHQGLARVYYLK---NELKAAYDEMTKLLEKAQYSASAFEKRS----EYSD 825 (929)
Q Consensus 755 g~~~~~~g~~~eA~~~~~~al~~--~~~~a~~~la~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~lg----~~g~ 825 (929)
|.-.+..+....|+..|.++++. .....+.+.+.++.+. |+.-.|+.....+++++|....+++.++ ++++
T Consensus 381 gnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r 460 (758)
T KOG1310|consen 381 GNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTR 460 (758)
T ss_pred ccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhh
Confidence 34445556778888888888877 3335666677777664 4455677777778888888877777776 6788
Q ss_pred HHHHHHHHHHHHhcCCCC
Q 002379 826 REMAKNDLNMATQLDPLR 843 (929)
Q Consensus 826 ~~~A~~~~~~al~l~p~~ 843 (929)
+.+|+.+...+....|.+
T Consensus 461 ~~eal~~~~alq~~~Ptd 478 (758)
T KOG1310|consen 461 YLEALSCHWALQMSFPTD 478 (758)
T ss_pred HHHhhhhHHHHhhcCchh
Confidence 888888887777777744
No 384
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=81.07 E-value=56 Score=36.02 Aligned_cols=133 Identities=9% Similarity=-0.051 Sum_probs=65.2
Q ss_pred HHHHHhCCHHHHHHHHHHHhcccC----------CHhHHHHHHHHHHHhccHHHHHHHHHHHHhhcCCchhhhccccHHH
Q 002379 523 VAKMEEGQIRAAISEIDRIIVFKL----------SVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDH 592 (929)
Q Consensus 523 ~~~~~~g~~~~A~~~~~~al~~~~----------~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~ 592 (929)
..++.++++++|.+.-+..+..-. ....|+.+...|-..|+...-...+...+....--....+..-...
T Consensus 134 Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN 213 (493)
T KOG2581|consen 134 LFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLIN 213 (493)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHH
Confidence 344556788888776665542110 1222444444555556655444444444332110000111112233
Q ss_pred HHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHH--hcCC--CChHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 002379 593 LVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQML--INDP--GKSFLRFRQSLLLLRLNCQKAAMRCLRLARN 668 (929)
Q Consensus 593 ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al--~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~ 668 (929)
++-..|...+.|+.|..+. .+.. +... ..+...+.+|.+..-+++|..|.+++-+|+.
T Consensus 214 ~LLr~yL~n~lydqa~~lv------------------sK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~r 275 (493)
T KOG2581|consen 214 LLLRNYLHNKLYDQADKLV------------------SKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALR 275 (493)
T ss_pred HHHHHHhhhHHHHHHHHHh------------------hcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHH
Confidence 3334445555666664433 1111 0001 2234556777777777778888888877777
Q ss_pred cCCch
Q 002379 669 HSSSE 673 (929)
Q Consensus 669 ~~p~~ 673 (929)
..|++
T Consensus 276 kapq~ 280 (493)
T KOG2581|consen 276 KAPQH 280 (493)
T ss_pred hCcch
Confidence 77764
No 385
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=81.02 E-value=20 Score=41.07 Aligned_cols=100 Identities=13% Similarity=-0.011 Sum_probs=62.2
Q ss_pred HHHcCCHHHHHHHHHHH--HcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHh-hhCCHHHHHHHHH
Q 002379 758 YVECGKLDQAENCYINA--LDIKHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS-EYSDREMAKNDLN 834 (929)
Q Consensus 758 ~~~~g~~~eA~~~~~~a--l~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg-~~g~~~~A~~~~~ 834 (929)
....|+++++....... +..-+..-...++.-+.++|.++.|+..- .++...+.++ +.|+.+.|.+..+
T Consensus 271 av~~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~--------~D~~~rFeLAl~lg~L~~A~~~a~ 342 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQFV--------TDPDHRFELALQLGNLDIALEIAK 342 (443)
T ss_dssp HHHTT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHS--------S-HHHHHHHHHHCT-HHHHHHHCC
T ss_pred HHHcCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhc--------CChHHHhHHHHhcCCHHHHHHHHH
Confidence 34567888876666422 22234556677777888888888887753 3455666666 6777777766543
Q ss_pred HHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 002379 835 MATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKA 870 (929)
Q Consensus 835 ~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~ka 870 (929)
+ .+++..|..||...+.+|+++-|.++|+++
T Consensus 343 ~-----~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~ 373 (443)
T PF04053_consen 343 E-----LDDPEKWKQLGDEALRQGNIELAEECYQKA 373 (443)
T ss_dssp C-----CSTHHHHHHHHHHHHHTTBHHHHHHHHHHC
T ss_pred h-----cCcHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 2 346778889999999999999999888876
No 386
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=80.81 E-value=2.2 Score=27.02 Aligned_cols=23 Identities=17% Similarity=0.069 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHH
Q 002379 676 RLVYEGWILYDTGHREEALSRAE 698 (929)
Q Consensus 676 ~~~~lg~~~~~~g~~~eA~~~~~ 698 (929)
+...+|.++...|++++|...++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 44556666666666666665554
No 387
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=80.28 E-value=3 Score=29.31 Aligned_cols=29 Identities=17% Similarity=0.343 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 002379 845 YPYRYRAAVLMDDQKEVEAVEELSKAIAF 873 (929)
Q Consensus 845 ~~~~~la~~~~~~g~~~eA~~~l~kal~~ 873 (929)
+++..||.+-+..++|++|++.|++++++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 35566677777777777777777777654
No 388
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=80.14 E-value=92 Score=33.62 Aligned_cols=165 Identities=13% Similarity=0.026 Sum_probs=85.1
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHh----cCCc--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHHHH
Q 002379 644 FRQSLLLLRLNCQKAAMRCLRLARN----HSSS--EHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYIL 717 (929)
Q Consensus 644 ~~lg~~~~~~g~~~~A~~~l~~al~----~~p~--~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~l~~~l 717 (929)
..+..+|...++|.+|+......+. ++.. -.+++..-..+|+...+..+|...+..|-.....- |
T Consensus 132 arli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~Anai--Y------- 202 (411)
T KOG1463|consen 132 ARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAI--Y------- 202 (411)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhccc--c-------
Confidence 3566777788888888776655542 2222 24556666777777777777777665554321100 0
Q ss_pred HhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC-----CCHH---HHHHHHHH
Q 002379 718 ADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI-----KHTR---AHQGLARV 789 (929)
Q Consensus 718 ~~~~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~-----~~~~---a~~~la~~ 789 (929)
-| .+.. +..-..-|..+....+|.-|..+|-.|.+- .+.. ++-.+-.+
T Consensus 203 -----cp-------PqlQ------------a~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLc 258 (411)
T KOG1463|consen 203 -----CP-------PQLQ------------ATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLC 258 (411)
T ss_pred -----cC-------HHHH------------HHHHHhccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHH
Confidence 00 0000 111223345555567777777777777665 2222 22333334
Q ss_pred HHHhCCHHHHHHHH--HHHHHHccCCHHHHHHHh------hhCCHHHHHHHHHHHHhcCC
Q 002379 790 YYLKNELKAAYDEM--TKLLEKAQYSASAFEKRS------EYSDREMAKNDLNMATQLDP 841 (929)
Q Consensus 790 ~~~~g~~~~A~~~~--~~al~~~p~~~~~~~~lg------~~g~~~~A~~~~~~al~l~p 841 (929)
-...+..++--..+ +.+++......++....+ .+.+|+.|+..|..-+..||
T Consensus 259 KIMln~~ddv~~lls~K~~l~y~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~~D~ 318 (411)
T KOG1463|consen 259 KIMLNLPDDVAALLSAKLALKYAGRDIDAMKAVAEAFGNRSLKDFEKALADYKKELAEDP 318 (411)
T ss_pred HHHhcCHHHHHHHHhhHHHHhccCcchHHHHHHHHHhcCCcHHHHHHHHHHhHHHHhcCh
Confidence 44455555443333 233333333333333333 24566777777777666665
No 389
>PRK11619 lytic murein transglycosylase; Provisional
Probab=79.69 E-value=1.5e+02 Score=35.85 Aligned_cols=309 Identities=10% Similarity=-0.025 Sum_probs=139.5
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHhcccCCHhHHHHHHHHHHHhccHHHHHHHHHHHHhhcCCchhhhccccHHHHHHH
Q 002379 517 PYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKL 596 (929)
Q Consensus 517 a~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~ll~~ 596 (929)
..+..+.-..+.|++..+.....++- -.|- ..|.....+....++ .....+...++.+|+.+ ....+...
T Consensus 35 ~~f~~A~~a~~~g~~~~~~~~~~~l~-d~pL-~~yl~y~~L~~~l~~--~~~~ev~~Fl~~~~~~P------~~~~Lr~~ 104 (644)
T PRK11619 35 QRYQQIKQAWDNRQMDVVEQLMPTLK-DYPL-YPYLEYRQLTQDLMN--QPAVQVTNFIRANPTLP------PARSLQSR 104 (644)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhcc-CCCc-HhHHHHHHHHhcccc--CCHHHHHHHHHHCCCCc------hHHHHHHH
Confidence 34556677778888888766666542 1221 112211222222221 12235666677788877 22222222
Q ss_pred HHHh---hcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCch
Q 002379 597 LNHH---VRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE 673 (929)
Q Consensus 597 ~~~~---~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~ 673 (929)
.... .++|..- .+.....|.+....+..+......|+.++|....+++.......
T Consensus 105 ~l~~La~~~~w~~~----------------------~~~~~~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~~ 162 (644)
T PRK11619 105 FVNELARREDWRGL----------------------LAFSPEKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKSL 162 (644)
T ss_pred HHHHHHHccCHHHH----------------------HHhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Confidence 2222 2222221 12222347777777888888888899888887777776555443
Q ss_pred HHHHHHHHH------------------HHHHcCCHHHHHHHHHHHHhhccchHHHHHHHHHHHhcCCCCCChHHHHHHHH
Q 002379 674 HERLVYEGW------------------ILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLE 735 (929)
Q Consensus 674 ~~~~~~lg~------------------~~~~~g~~~eA~~~~~~al~~~p~~~~~~~l~~~l~~~~~~~~~~~~a~~~~e 735 (929)
+.....+-. ..+..|+...|....... .++... ++..+.....++. ...
T Consensus 163 p~~cd~l~~~~~~~g~lt~~d~w~R~~~al~~~~~~lA~~l~~~l---~~~~~~---~a~a~~al~~~p~-------~~~ 229 (644)
T PRK11619 163 PNACDKLFSVWQQSGKQDPLAYLERIRLAMKAGNTGLVTYLAKQL---PADYQT---IASALIKLQNDPN-------TVE 229 (644)
T ss_pred ChHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHhc---ChhHHH---HHHHHHHHHHCHH-------HHH
Confidence 333333333 333344444443333222 111100 0001000000000 011
Q ss_pred HHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC---CCH---HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 002379 736 EALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI---KHT---RAHQGLARVYYLKNELKAAYDEMTKLLEK 809 (929)
Q Consensus 736 ~Al~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~---~~~---~a~~~la~~~~~~g~~~~A~~~~~~al~~ 809 (929)
......... ........++.......+.+.|...+.+.... ... .++..+|.-....+...+|...+..+...
T Consensus 230 ~~~~~~~~~-~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~ 308 (644)
T PRK11619 230 TFARTTGPT-DFTRQMAAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR 308 (644)
T ss_pred HHhhccCCC-hhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc
Confidence 111100000 00111223344444566677777777764333 111 23334443333332245555555554322
Q ss_pred ccCCH--HHHHHHh-hhCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002379 810 AQYSA--SAFEKRS-EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAI 871 (929)
Q Consensus 810 ~p~~~--~~~~~lg-~~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal 871 (929)
..+.. +.....+ ..++++.+...+...-..........+.+|..+...|+.++|...|+++.
T Consensus 309 ~~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 309 SQSTSLLERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred cCCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 21111 1111122 45566655555555333223455566667777666777777777777763
No 390
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=79.43 E-value=93 Score=33.26 Aligned_cols=52 Identities=12% Similarity=-0.023 Sum_probs=32.1
Q ss_pred ccccccccccHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 002379 616 RWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNH 669 (929)
Q Consensus 616 ~~~~~~~~~~l~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~ 669 (929)
.|........+.....+++++|.-+.++..++.--. --..+|.+.+++|++.
T Consensus 194 AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEEa--~Ti~~AE~l~k~ALka 245 (556)
T KOG3807|consen 194 AWRERNPPARIKAAYQALEINNECATAYVLLAEEEA--TTIVDAERLFKQALKA 245 (556)
T ss_pred HHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhhh--hhHHHHHHHHHHHHHH
Confidence 444555555567777777777777777766654322 2345667777777654
No 391
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=79.08 E-value=2.1 Score=45.76 Aligned_cols=84 Identities=18% Similarity=0.091 Sum_probs=66.0
Q ss_pred CcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCch-HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 002379 843 RTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQ-MLHLRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNRAR 921 (929)
Q Consensus 843 ~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~-~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~l~ 921 (929)
......+++.+-.+.+.+..|+..-..++..+++.. .+|.++..+....++++|+++++.+....|++......+..++
T Consensus 274 r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~ 353 (372)
T KOG0546|consen 274 RFSIRRNLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVR 353 (372)
T ss_pred ccccccchHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhh
Confidence 344455678888888899888888887877766664 4556699999999999999999999999999988887777766
Q ss_pred hhhhh
Q 002379 922 DQASH 926 (929)
Q Consensus 922 ~~~~~ 926 (929)
.+..+
T Consensus 354 ~~~~~ 358 (372)
T KOG0546|consen 354 QKKKQ 358 (372)
T ss_pred hHHHH
Confidence 55544
No 392
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=78.89 E-value=5 Score=34.87 Aligned_cols=56 Identities=14% Similarity=0.137 Sum_probs=44.4
Q ss_pred HHHcCCHHHHHHHHHHHHcC-----C-C-----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCC
Q 002379 758 YVECGKLDQAENCYINALDI-----K-H-----TRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYS 813 (929)
Q Consensus 758 ~~~~g~~~eA~~~~~~al~~-----~-~-----~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 813 (929)
....|+|.+|++.+.+.... . . ..+..++|.++...|++++|+..+++++++....
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~ 74 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAREN 74 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 35679999998888887765 1 1 2467889999999999999999999999876543
No 393
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=78.80 E-value=3.1 Score=26.34 Aligned_cols=23 Identities=22% Similarity=0.043 Sum_probs=13.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHH
Q 002379 846 PYRYRAAVLMDDQKEVEAVEELS 868 (929)
Q Consensus 846 ~~~~la~~~~~~g~~~eA~~~l~ 868 (929)
+...+|.++...|++++|...++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 44556666666666666665553
No 394
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.24 E-value=1.5e+02 Score=34.88 Aligned_cols=99 Identities=10% Similarity=-0.063 Sum_probs=56.8
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHhhhCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHH
Q 002379 783 HQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVE 862 (929)
Q Consensus 783 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~e 862 (929)
+.+-|.-+++..+|..+++.|...+...|.+.... ..+.....++.+|....+.+.
T Consensus 357 LWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~------------------------~FaK~qR~l~~CYL~L~QLD~ 412 (872)
T KOG4814|consen 357 LWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSD------------------------RFAKIQRALQVCYLKLEQLDN 412 (872)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhh------------------------HHHHHHHHHHHHHhhHHHHHH
Confidence 34455666777778888888877776665542210 123344555666666666666
Q ss_pred HHHHHHHHHhcCCCchHHH-HHHHHHHHcCCHHHHHHHHHHHhc
Q 002379 863 AVEELSKAIAFKPDLQMLH-LRAAFYESIGDLTSAIRDSQAALC 905 (929)
Q Consensus 863 A~~~l~kal~~~p~~~~~~-~la~~~~~~g~~~~A~~~~~~al~ 905 (929)
|.++++.|-+.+|.++.-. ..-.+....|+-++|+....+...
T Consensus 413 A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s 456 (872)
T KOG4814|consen 413 AVEVYQEAEEVDRQSPLCQLLMLQSFLAEDKSEEALTCLQKIKS 456 (872)
T ss_pred HHHHHHHHHhhccccHHHHHHHHHHHHHhcchHHHHHHHHHHHh
Confidence 6666666666666554322 223444445666666665555443
No 395
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=77.85 E-value=14 Score=30.61 Aligned_cols=56 Identities=13% Similarity=0.053 Sum_probs=40.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCchHHH----HHHHHHHHcCCHHHHHHHHHHHhc
Q 002379 850 RAAVLMDDQKEVEAVEELSKAIAFKPDLQMLH----LRAAFYESIGDLTSAIRDSQAALC 905 (929)
Q Consensus 850 la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~----~la~~~~~~g~~~~A~~~~~~al~ 905 (929)
.|.-++..++.++|+..++++++..++.+.-+ .+..+|...|++.+++++--+=+.
T Consensus 12 ~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~ 71 (80)
T PF10579_consen 12 KGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLE 71 (80)
T ss_pred HHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445577888889999999988877776433 457778888888887776554433
No 396
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.18 E-value=1.5e+02 Score=34.27 Aligned_cols=74 Identities=9% Similarity=0.020 Sum_probs=57.0
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCch----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc
Q 002379 630 NQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE----HERLVYEGWILYDTGHREEALSRAEKSISIER 705 (929)
Q Consensus 630 ~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~----~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p 705 (929)
.......|+++...+..+..+...|+.+.|+..++..+. +.. .-.++.+|+++.-+.+|..|...+......+.
T Consensus 257 l~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~desd 334 (546)
T KOG3783|consen 257 KKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLLRDESD 334 (546)
T ss_pred HHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhh
Confidence 455566788888888899999999998888888888776 332 23456778888888999999888888776543
No 397
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=77.02 E-value=21 Score=37.72 Aligned_cols=64 Identities=8% Similarity=-0.060 Sum_probs=58.9
Q ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 002379 640 SFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISI 703 (929)
Q Consensus 640 ~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~ 703 (929)
..++..++..+...|+++.++..+++.+..+|.+-..|..+-..|+..|+...|+..|++.-+.
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 4567788889999999999999999999999999999999999999999999999999987663
No 398
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=76.51 E-value=37 Score=43.02 Aligned_cols=164 Identities=15% Similarity=0.037 Sum_probs=102.7
Q ss_pred HHHHHHHHHHHHhcCHHHHHH------HHHH-HHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--------c
Q 002379 641 FLRFRQSLLLLRLNCQKAAMR------CLRL-ARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIE--------R 705 (929)
Q Consensus 641 ~~~~~lg~~~~~~g~~~~A~~------~l~~-al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~--------p 705 (929)
.-....|......|.+.+|.+ .+.. .-.+.|.....+..++.++...|++++|+..-.++.-+. |
T Consensus 933 ~~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~ 1012 (1236)
T KOG1839|consen 933 KDSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSP 1012 (1236)
T ss_pred hhhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCH
Confidence 344566666677777777777 4442 234578888999999999999999999999887776443 2
Q ss_pred ch-HHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhcc---Cch--hHHHHHHHHHHHHcCCHHHHHHHHHHHHcCC-
Q 002379 706 TF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDG---LRK--GQALNNLGSIYVECGKLDQAENCYINALDIK- 778 (929)
Q Consensus 706 ~~-~~~~~l~~~l~~~~~~~~~~~~a~~~~e~Al~~~~~a---l~~--~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~- 778 (929)
+. ..+.+++....... ....+...+..|.....-. ..| .....+++.++...++++.|+.+.+.|.+..
T Consensus 1013 ~t~~~y~nlal~~f~~~----~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~ 1088 (1236)
T KOG1839|consen 1013 NTKLAYGNLALYEFAVK----NLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNK 1088 (1236)
T ss_pred HHHHHhhHHHHHHHhcc----CccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHh
Confidence 22 44445553333333 2222222333333221111 223 3566788999999999999999999998871
Q ss_pred ---------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 002379 779 ---------HTRAHQGLARVYYLKNELKAAYDEMTKLLE 808 (929)
Q Consensus 779 ---------~~~a~~~la~~~~~~g~~~~A~~~~~~al~ 808 (929)
....+..+++++...+++..|....+....
T Consensus 1089 ~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~ 1127 (1236)
T KOG1839|consen 1089 KVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYG 1127 (1236)
T ss_pred hhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHH
Confidence 123455566666666666666555544443
No 399
>KOG3840 consensus Uncharaterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=76.40 E-value=5.1 Score=41.48 Aligned_cols=83 Identities=17% Similarity=0.192 Sum_probs=56.2
Q ss_pred EEEEEcCeEEEeehhHHhccC-HHHHHHhcCCCC---cCCCCeeEecCCCCCHHHHHHHhhhHccCCCCCCChhHHHHHH
Q 002379 220 VTFCVRDKEISFVRNKIASLS-SPFKAMLYGGFV---ESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFCPGIVLELL 295 (929)
Q Consensus 220 v~~~v~~~~~~~hr~iLaa~S-~~F~~mf~~~~~---e~~~~~i~~~~~~~~~~~~~~~l~~~Yt~~~~~~~~~~~~~ll 295 (929)
||..|++-.|-..+.+|.+.- .-.-.||.+++. ....++.++. +||+..+|+++|+|--||.+..-+.-.|-||-
T Consensus 98 ~t~lvd~~rf~v~q~llt~~p~Tmlg~mf~~g~~f~~pNErgEyeVA-dGi~s~vFRAILdYYksG~iRCP~~vSvpELr 176 (438)
T KOG3840|consen 98 VCLLVDQTRFLVSQRLLTSKPDTMLGRMFSMGADLVSPNERDEFEVA-DGMTSSCFRAILDYYQSGTMRCPSSVSVSELR 176 (438)
T ss_pred eEEEeeeEEEEeeeeeecCCcchhhhhhhcccccccCCCcCCceehh-cchhHHHHHHHHHHHhcCceeCCCCCchHHHH
Confidence 999999999999999886642 123457776643 2334456654 79999999999999999999832222344444
Q ss_pred HHhchhCh
Q 002379 296 SFANRFCC 303 (929)
Q Consensus 296 ~~A~~~~~ 303 (929)
.+.|.++|
T Consensus 177 EACDYLli 184 (438)
T KOG3840|consen 177 EACDYLLV 184 (438)
T ss_pred hhcceEEe
Confidence 44444433
No 400
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=75.33 E-value=4.6 Score=42.32 Aligned_cols=78 Identities=5% Similarity=0.005 Sum_probs=68.3
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHH-HHHHHHHcCCHHHHHHHHHHHHhhccch
Q 002379 630 NQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVY-EGWILYDTGHREEALSRAEKSISIERTF 707 (929)
Q Consensus 630 ~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~-lg~~~~~~g~~~eA~~~~~~al~~~p~~ 707 (929)
.++...-|+++..|...+......|.|.+--..|.++++.+|.+.+.|.. -+.-+...++.+.+...|.++++.+|+.
T Consensus 97 ~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~ 175 (435)
T COG5191 97 YRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRS 175 (435)
T ss_pred ehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCC
Confidence 45555568899999998888888899999999999999999999999987 5666788999999999999999999887
No 401
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=74.59 E-value=8.4 Score=26.72 Aligned_cols=31 Identities=19% Similarity=0.266 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHH--HHHHHhhcc
Q 002379 675 ERLVYEGWILYDTGHREEALSR--AEKSISIER 705 (929)
Q Consensus 675 ~~~~~lg~~~~~~g~~~eA~~~--~~~al~~~p 705 (929)
+.+..+|..+...|++++|+.. |+-+..+++
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~ 34 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDK 34 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence 3455566666666666666666 334444443
No 402
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=74.40 E-value=96 Score=36.01 Aligned_cols=126 Identities=13% Similarity=-0.132 Sum_probs=67.4
Q ss_pred HHHHHHHHhcccC-CHhHHHH--HHHHHHHhccHHHHHHHHHHHHhhcCCchhhhccccHHHHHHHHHHhhcccchH-HH
Q 002379 534 AISEIDRIIVFKL-SVDCLEL--RAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPA-DC 609 (929)
Q Consensus 534 A~~~~~~al~~~~-~~~~~~~--~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A-~~ 609 (929)
++..+...+.+++ +++.+.. +...+...++...+.-.....+..+|++. .+...++......+....+ ..
T Consensus 50 ~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~------~~~~~L~~ale~~~~~~~~~~~ 123 (620)
T COG3914 50 AIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENC------PAVQNLAAALELDGLQFLALAD 123 (620)
T ss_pred HHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccc------hHHHHHHHHHHHhhhHHHHHHH
Confidence 4444444444444 3443222 24444455666666666677777777766 5555555554443333322 11
Q ss_pred HHHhhhccccccccccHHHHHHHHhcCCCChHHHHHH------HHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHH
Q 002379 610 WIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQ------SLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWI 683 (929)
Q Consensus 610 ~l~l~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~l------g~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~ 683 (929)
+. +-+....|.+......+ +.....+|+..++....+++....|.++.+...+...
T Consensus 124 ~~------------------~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~ 185 (620)
T COG3914 124 IS------------------EIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTA 185 (620)
T ss_pred HH------------------HHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence 11 33555666666555444 5555666666666677777777777665554444443
No 403
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=73.73 E-value=8.2 Score=26.75 Aligned_cols=21 Identities=19% Similarity=-0.119 Sum_probs=11.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHH
Q 002379 846 PYRYRAAVLMDDQKEVEAVEE 866 (929)
Q Consensus 846 ~~~~la~~~~~~g~~~eA~~~ 866 (929)
.+..+|..+...|++++|++.
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHH
Confidence 344555555555555555555
No 404
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=73.29 E-value=35 Score=43.15 Aligned_cols=168 Identities=15% Similarity=0.075 Sum_probs=103.8
Q ss_pred HHHHHHHHHHhCCHHHHHH------HHHHHh-cccC-CHhHHHHHHHHHHHhccHHHHHHHHHHHHhhcCCch--hhhcc
Q 002379 518 YKYRAVAKMEEGQIRAAIS------EIDRII-VFKL-SVDCLELRAWLFIAADDYESALRDTLALLALESNYM--MFHGR 587 (929)
Q Consensus 518 ~~~~a~~~~~~g~~~~A~~------~~~~al-~~~~-~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~ 587 (929)
....|......|.+.+|.. .+++.. .+.+ .+.++..++.++..++++++|+..-.++.-+..... .....
T Consensus 935 ~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t 1014 (1236)
T KOG1839|consen 935 SPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNT 1014 (1236)
T ss_pred hhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHH
Confidence 4556666777778887777 444222 1222 556688999999999999999988777654322111 01111
Q ss_pred ccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhc--------CCCChHHHHHHHHHHHHhcCHHHH
Q 002379 588 VSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLIN--------DPGKSFLRFRQSLLLLRLNCQKAA 659 (929)
Q Consensus 588 ~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A 659 (929)
...+..++......++...|...+ .++... .|.-+....+++.++...++++.|
T Consensus 1015 ~~~y~nlal~~f~~~~~~~al~~~------------------~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~a 1076 (1236)
T KOG1839|consen 1015 KLAYGNLALYEFAVKNLSGALKSL------------------NRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTA 1076 (1236)
T ss_pred HHHhhHHHHHHHhccCccchhhhH------------------HHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHH
Confidence 134444555555555544443333 444332 455566677889999999999999
Q ss_pred HHHHHHHHhcCCc--------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 002379 660 MRCLRLARNHSSS--------EHERLVYEGWILYDTGHREEALSRAEKSISI 703 (929)
Q Consensus 660 ~~~l~~al~~~p~--------~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~ 703 (929)
+++.+.|...+.. ....+..++..+...+++..|+...+....+
T Consensus 1077 l~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~i 1128 (1236)
T KOG1839|consen 1077 LRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYGI 1128 (1236)
T ss_pred HHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHH
Confidence 9999999875422 2334555566666666666666665555443
No 405
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=73.08 E-value=7.1 Score=25.54 Aligned_cols=31 Identities=26% Similarity=0.217 Sum_probs=24.6
Q ss_pred CCHHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 002379 891 GDLTSAIRDSQAALCLDPNHMETLDLYNRAR 921 (929)
Q Consensus 891 g~~~~A~~~~~~al~l~P~~~~a~~~~~~l~ 921 (929)
|+.+.|...|++++...|.++..|..+....
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~e 31 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEFE 31 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 5677888888888888888888888777654
No 406
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.01 E-value=1.2e+02 Score=37.58 Aligned_cols=28 Identities=14% Similarity=-0.017 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 002379 642 LRFRQSLLLLRLNCQKAAMRCLRLARNH 669 (929)
Q Consensus 642 ~~~~lg~~~~~~g~~~~A~~~l~~al~~ 669 (929)
-+..++.+|...|+.++|++.+.....-
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~ 533 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDE 533 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhcc
Confidence 4677888999999999999999988773
No 407
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=71.06 E-value=13 Score=27.10 Aligned_cols=23 Identities=22% Similarity=0.057 Sum_probs=11.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 002379 849 YRAAVLMDDQKEVEAVEELSKAI 871 (929)
Q Consensus 849 ~la~~~~~~g~~~eA~~~l~kal 871 (929)
.+|.+|..+|+.+.|.+.++.++
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHH
Confidence 34444555555555555554444
No 408
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=70.39 E-value=47 Score=35.46 Aligned_cols=85 Identities=13% Similarity=0.031 Sum_probs=54.2
Q ss_pred hHHHHHHHHHhhcchHH---HHHHHHHHHhhHHHHhcccHHHHHHHHHHHHhc----Ccc----ccHHHHHHHHHHhchH
Q 002379 399 NTTVMLLERLGECSTER---WQRMLALHQLGCVMFEREEYKDACYYFEAAADA----GHI----YSLAGLARAKYKVGQQ 467 (929)
Q Consensus 399 ~~~~~~Le~l~~~~~~~---~~~a~~~~~lG~~~~~~g~y~~A~~~f~~al~~----~~~----~~~a~la~~~~~~g~a 467 (929)
+.-+..|+...+-++.+ .....+....|..|.+-||-+.|.+++.+..+. +.. .....++..|....-.
T Consensus 81 eeki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV 160 (393)
T KOG0687|consen 81 EEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLV 160 (393)
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHH
Confidence 34445555555544443 245567888999999999999999998876655 322 2223555556666656
Q ss_pred HHHHHHHHhhhccCCC
Q 002379 468 YSAYKLINSIISEHKP 483 (929)
Q Consensus 468 ~~a~~~~~~~~~~~~~ 483 (929)
.+..+++..++.....
T Consensus 161 ~~~iekak~liE~GgD 176 (393)
T KOG0687|consen 161 TESIEKAKSLIEEGGD 176 (393)
T ss_pred HHHHHHHHHHHHhCCC
Confidence 6667766666665433
No 409
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=70.19 E-value=1.2e+02 Score=33.82 Aligned_cols=168 Identities=14% Similarity=0.196 Sum_probs=99.1
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHH------------hCCHHHHHHHHHHHhcccC-CHhHHHHHHHHHHHhc--c
Q 002379 499 EKIVDLNYASELDPTLSFPYKYRAVAKME------------EGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAAD--D 563 (929)
Q Consensus 499 ~Ai~~~~kal~l~P~~~~a~~~~a~~~~~------------~g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~~g--~ 563 (929)
++++.-.+.++.+|+....|..+-.++.. +.-.++-+.....++..+| +-.++..+.++..+.+ +
T Consensus 47 e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~ 126 (421)
T KOG0529|consen 47 EHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSD 126 (421)
T ss_pred HHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCch
Confidence 44444444555555555555444333322 1134455556666666665 4445667777776554 3
Q ss_pred HHHHHHHHHHHHhhcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHH
Q 002379 564 YESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLR 643 (929)
Q Consensus 564 ~~~A~~~~~~al~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~~p~~~~~~ 643 (929)
+..=++..+++++.+|.+. .+++....+........ ....+.+....+++..++.+-.+|
T Consensus 127 ~~~EL~lcek~L~~D~RNf------h~W~YRRfV~~~~~~~~--------------~~~~~El~ftt~~I~~nfSNYsaW 186 (421)
T KOG0529|consen 127 WNTELQLCEKALKQDPRNF------HAWHYRRFVVEQAERSR--------------NLEKEELEFTTKLINDNFSNYSAW 186 (421)
T ss_pred HHHHHHHHHHHHhcCcccc------cchHHHHHHHHHHhccc--------------ccchhHHHHHHHHHhccchhhhHH
Confidence 5677888889999998888 55555555543322210 011122445588888899999999
Q ss_pred HHHHHHHHHh------cC------HHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Q 002379 644 FRQSLLLLRL------NC------QKAAMRCLRLARNHSSSEHERLVYEGWILYD 686 (929)
Q Consensus 644 ~~lg~~~~~~------g~------~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~ 686 (929)
..+..++..+ |+ ...-+.....|+-.+|++..+|++.-+.+-+
T Consensus 187 hyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY~rWLl~~ 241 (421)
T KOG0529|consen 187 HYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFYHRWLLGR 241 (421)
T ss_pred HHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccceeeehHHhhcc
Confidence 9888877632 31 2334455666777788888888875555544
No 410
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=69.62 E-value=1.4e+02 Score=31.45 Aligned_cols=65 Identities=17% Similarity=0.004 Sum_probs=42.8
Q ss_pred CCcHHHHHHHHHHHhcCCHHHHHHHHHHH----------------HhcCCCchHHH-HH-HHHHHHcCCHHHHHHHHHHH
Q 002379 842 LRTYPYRYRAAVLMDDQKEVEAVEELSKA----------------IAFKPDLQMLH-LR-AAFYESIGDLTSAIRDSQAA 903 (929)
Q Consensus 842 ~~~~~~~~la~~~~~~g~~~eA~~~l~ka----------------l~~~p~~~~~~-~l-a~~~~~~g~~~~A~~~~~~a 903 (929)
.++..+..+|..+.+.|++.+|...|-.. .+-.|.....+ .+ -.-|...|+...|...+...
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f 167 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIARAVLQYLCLGNLRDANELFDTF 167 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHTTBHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 57888899999999999999988776321 12234444444 44 45566789999999888777
Q ss_pred hcc
Q 002379 904 LCL 906 (929)
Q Consensus 904 l~l 906 (929)
.+.
T Consensus 168 ~~~ 170 (260)
T PF04190_consen 168 TSK 170 (260)
T ss_dssp HHH
T ss_pred HHH
Confidence 655
No 411
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.26 E-value=38 Score=39.13 Aligned_cols=27 Identities=30% Similarity=0.634 Sum_probs=20.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHcC
Q 002379 751 LNNLGSIYVECGKLDQAENCYINALDI 777 (929)
Q Consensus 751 ~~~lg~~~~~~g~~~eA~~~~~~al~~ 777 (929)
|..||.+....+++..|.++|.++...
T Consensus 669 w~~Lg~~al~~~~l~lA~EC~~~a~d~ 695 (794)
T KOG0276|consen 669 WRQLGDAALSAGELPLASECFLRARDL 695 (794)
T ss_pred HHHHHHHHhhcccchhHHHHHHhhcch
Confidence 777788888888888888888777654
No 412
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=68.02 E-value=21 Score=37.84 Aligned_cols=61 Identities=18% Similarity=0.108 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHH-HHHHHHHHcCCHHHHHHHHHHHhc
Q 002379 845 YPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLH-LRAAFYESIGDLTSAIRDSQAALC 905 (929)
Q Consensus 845 ~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~-~la~~~~~~g~~~~A~~~~~~al~ 905 (929)
.++..++..+...|+++.+++.+++.+..+|-+...+ .+-..|...|+...|+..|++.-+
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 3445566666666677777777777777776665444 445666666777777766666544
No 413
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=66.38 E-value=23 Score=35.63 Aligned_cols=54 Identities=13% Similarity=0.035 Sum_probs=28.9
Q ss_pred CCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc
Q 002379 824 SDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDL 877 (929)
Q Consensus 824 g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~ 877 (929)
+...+|+...+.-++.+|.+......+-.+|.-.|+|++|...++-+-.+.|+.
T Consensus 15 ~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~ 68 (273)
T COG4455 15 NSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD 68 (273)
T ss_pred ccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence 444555555555555555555555555555555555555555555555555544
No 414
>KOG2723 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=66.06 E-value=19 Score=36.53 Aligned_cols=97 Identities=16% Similarity=-0.017 Sum_probs=63.5
Q ss_pred CCCC-EEEEEcCeEEEeehhHH-hccCHHHHHHhcCCCC--cCCCCeeEecCCCCCHHHHHHHhhhHccCCCCCCCh--h
Q 002379 216 EDDS-VTFCVRDKEISFVRNKI-ASLSSPFKAMLYGGFV--ESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFCP--G 289 (929)
Q Consensus 216 ~~~~-v~~~v~~~~~~~hr~iL-aa~S~~F~~mf~~~~~--e~~~~~i~~~~~~~~~~~~~~~l~~~Yt~~~~~~~~--~ 289 (929)
...+ |.+-|||+-+..-..-| +-.-.....||++.+. -+......| |=+-..|+-||+|+-|..+. ++. .
T Consensus 6 ~~~~~v~lnvGG~~ytt~l~tL~~~~ds~L~~~f~~~~~~~~d~~g~~fI---DRDG~lFRyvL~~LRt~~l~-lpe~f~ 81 (221)
T KOG2723|consen 6 EYPDVVELNVGGAIYTTRLGTLTKFPDSMLARMFSGELPLLRDSKGRYFI---DRDGFLFRYVLDYLRTKALL-LPEDFA 81 (221)
T ss_pred ccCCceeeccCCeEEEeeccceeechHHHHHhhcCCCCCccccccccEEE---cCCcchHHHHHHHhcccccc-cchhhh
Confidence 4455 88889887765443322 2223344566665222 122335555 34567899999999996665 666 6
Q ss_pred HHHHHHHHhchhChHhHHHHHHHHHHh
Q 002379 290 IVLELLSFANRFCCEEMKSACDAHLAS 316 (929)
Q Consensus 290 ~~~~ll~~A~~~~~~~l~~~C~~~l~~ 316 (929)
++..|..-|+.|+++.+...+.+....
T Consensus 82 e~~~L~rEA~f~~l~~~~~~l~~~~~~ 108 (221)
T KOG2723|consen 82 EVERLVREAEFFQLEAPVTYLLNSGQI 108 (221)
T ss_pred hHHHHHHHHHHHccccHHHHHhccccc
Confidence 788999999999999888776655443
No 415
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=65.48 E-value=20 Score=38.06 Aligned_cols=61 Identities=16% Similarity=0.037 Sum_probs=39.1
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch-HHHHHHHHHHHh
Q 002379 659 AMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILAD 719 (929)
Q Consensus 659 A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~~~~~l~~~l~~ 719 (929)
|..+|.+|..+.|++...++.+|.++...|+.-+|+-+|-+++.....+ .+..++...+..
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 5667777777777777777777777777777777777777777554333 555555555544
No 416
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=64.35 E-value=3.4e+02 Score=33.16 Aligned_cols=280 Identities=13% Similarity=0.017 Sum_probs=171.2
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHH---HHcCCHHHHHHHHHHHHh
Q 002379 626 LAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWIL---YDTGHREEALSRAEKSIS 702 (929)
Q Consensus 626 l~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~---~~~g~~~eA~~~~~~al~ 702 (929)
+..++.-+.+++.+...+..+-.++...|+.++-...-.++.++.|..+..|.....-. ...+...++...|++++.
T Consensus 99 i~t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~ 178 (881)
T KOG0128|consen 99 IRTLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEELFEKALG 178 (881)
T ss_pred HHHHHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhc
Confidence 55566777788888888889999999999999888888888888888888776554322 234778889999999987
Q ss_pred hccchHHHHHHHHHHHhcC---CCCCChHHHHHHHHHHhhchhccCchh----HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002379 703 IERTFEAFFLKAYILADTN---LDPESSTYVIQLLEEALRCPSDGLRKG----QALNNLGSIYVECGKLDQAENCYINAL 775 (929)
Q Consensus 703 ~~p~~~~~~~l~~~l~~~~---~~~~~~~~a~~~~e~Al~~~~~al~~~----~a~~~lg~~~~~~g~~~eA~~~~~~al 775 (929)
-.-.-..|...+..+...+ ...+........+++|+......+..+ ..+...-..|...-+.++-+.++...+
T Consensus 179 dy~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el 258 (881)
T KOG0128|consen 179 DYNSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALFVREL 258 (881)
T ss_pred ccccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 5433344444333333222 333555555666777776555444433 556666777777777778888888877
Q ss_pred cCC--CH---HHHHHHH--HH-HHHhCCHHHHHHHHHHHHHH-------ccCCHHHHHHHh----hhCCHHHHHHHHHHH
Q 002379 776 DIK--HT---RAHQGLA--RV-YYLKNELKAAYDEMTKLLEK-------AQYSASAFEKRS----EYSDREMAKNDLNMA 836 (929)
Q Consensus 776 ~~~--~~---~a~~~la--~~-~~~~g~~~~A~~~~~~al~~-------~p~~~~~~~~lg----~~g~~~~A~~~~~~a 836 (929)
... .. ..|.... .. .....+++.|...+.+.+.. .|.-...|...- ..|+.-.-...++++
T Consensus 259 ~~~~D~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~ 338 (881)
T KOG0128|consen 259 KQPLDEDTRGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQKEPIKDQEWMSYIDFEKKSGDPVRIQLIEERA 338 (881)
T ss_pred hccchhhhhHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 762 11 1111111 11 12234455555544443322 222222222222 346767777788888
Q ss_pred HhcCCCCcHHHHHHHHHH-HhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHcCC--HHHHHHHHHHHhc
Q 002379 837 TQLDPLRTYPYRYRAAVL-MDDQKEVEAVEELSKAIAFKPDLQMLHLRAAFYESIGD--LTSAIRDSQAALC 905 (929)
Q Consensus 837 l~l~p~~~~~~~~la~~~-~~~g~~~eA~~~l~kal~~~p~~~~~~~la~~~~~~g~--~~~A~~~~~~al~ 905 (929)
+.-.+.+...|...|..+ ..++-.+.+...+.+++..+|-...++.++.+-...++ ...=...+.+++.
T Consensus 339 ~~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~cp~tgdL~~rallAleR~re~~~vI~~~l~~~ls 410 (881)
T KOG0128|consen 339 VAEMVLDRALWIGYGVYLDTELKVPQRGVSVHPRAVRSCPWTGDLWKRALLALERNREEITVIVQNLEKDLS 410 (881)
T ss_pred HHhccccHHHHhhhhhhcccccccccccccccchhhcCCchHHHHHHHHHHHHHhcCcchhhHHHHHHHHHH
Confidence 888888888888877433 23445566777788888888877777766554444332 3333344444443
No 417
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=64.10 E-value=21 Score=39.31 Aligned_cols=56 Identities=14% Similarity=0.052 Sum_probs=40.1
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002379 645 RQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKS 700 (929)
Q Consensus 645 ~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~a 700 (929)
.+..+|+++++.+.|+....+.+.++|....-+...|.++..+.+|.+|...+.-+
T Consensus 233 klv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSamia 288 (569)
T PF15015_consen 233 KLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAMIA 288 (569)
T ss_pred HHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667777777777777777777777777777777777777777777776655443
No 418
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=63.16 E-value=1.7e+02 Score=31.58 Aligned_cols=174 Identities=9% Similarity=0.002 Sum_probs=93.6
Q ss_pred HHHHHhcCCCChHHH---HHHHHHHHHhcCHHHHHHHHHHHHhc----------C--------------------Cch--
Q 002379 629 INQMLINDPGKSFLR---FRQSLLLLRLNCQKAAMRCLRLARNH----------S--------------------SSE-- 673 (929)
Q Consensus 629 ~~~al~~~p~~~~~~---~~lg~~~~~~g~~~~A~~~l~~al~~----------~--------------------p~~-- 673 (929)
|++..+.-|++.... ...|.++...++|.+....+..+-.. . |..
T Consensus 44 y~Q~~q~~kk~~~~il~~L~~Gl~a~~~~dya~S~~~ldAae~~~KqqqD~~~~S~~~A~~vGst~vNDNi~~Y~g~~YE 123 (449)
T COG3014 44 YEQSKQFTKKKKNALLWDLQNGLSALYARDYATSLGVLDAAEQRFKQQQDTQSASTRGAGYVGATMINDNVRAYGGNIYE 123 (449)
T ss_pred HHHHHHhhhhhhHHHHHhhhhhHHHHHhhhHHHhhhHHHHHHHHHhhhhhhheeccccccchhhhhhccchhhcCchhHH
Confidence 455555545443322 35677888778877766666544211 1 111
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHH
Q 002379 674 -HERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALN 752 (929)
Q Consensus 674 -~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~l~~~l~~~~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~ 752 (929)
.-..+++|.-|+..++++.|+--|+++......-.-++. +..++|++..+..-.....-.
T Consensus 124 ~~~~n~YkaLNYm~~nD~~~ArVEfnRan~rQ~~AKe~~~-------------------~ei~ka~~e~ds~k~~~N~~~ 184 (449)
T COG3014 124 GVLINYYKALNYMLLNDSAKARVEFNRANERQRRAKEFYY-------------------EEVQKAIKEIDSSKHNINMER 184 (449)
T ss_pred HHHHHHHHHhhHHHhcchhhhHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHhccCCCchhH
Confidence 123466788899999999999999998875432200000 011222222211111000000
Q ss_pred HHHH-HHHHcCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHh
Q 002379 753 NLGS-IYVECGKLDQAENCYINALDIKHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS 821 (929)
Q Consensus 753 ~lg~-~~~~~g~~~eA~~~~~~al~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 821 (929)
.++. .-.-...|..=...|+.--.+.++.+-+..+..+...|++.++...+..+.-+.|+......+.+
T Consensus 185 ~~ae~s~~i~n~Y~ny~~~yea~~~l~npYv~Yl~~lf~a~n~dv~kg~~~~~e~~gi~qd~~~~~~qY~ 254 (449)
T COG3014 185 SRAEVSEILNNTYSNYLDKYEAYQGLLNPYVSYLSGLFYALNGDVNKGLGYLNEAYGISQDQSPFVAQYL 254 (449)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhcccCccHhHHHHHHHHHhccCchhhHHHHHhc
Confidence 1111 01111222222333443334456777777888888888999999999999888887655544444
No 419
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=62.64 E-value=2.3e+02 Score=31.57 Aligned_cols=23 Identities=22% Similarity=0.120 Sum_probs=11.0
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHH
Q 002379 784 QGLARVYYLKNELKAAYDEMTKL 806 (929)
Q Consensus 784 ~~la~~~~~~g~~~~A~~~~~~a 806 (929)
+.+-+.|...+.++.|-....+.
T Consensus 213 N~LLr~yL~n~lydqa~~lvsK~ 235 (493)
T KOG2581|consen 213 NLLLRNYLHNKLYDQADKLVSKS 235 (493)
T ss_pred HHHHHHHhhhHHHHHHHHHhhcc
Confidence 33444555555555555444433
No 420
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=61.80 E-value=2e+02 Score=29.78 Aligned_cols=63 Identities=11% Similarity=0.082 Sum_probs=46.1
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhcccC--CHhHHHHHHHHHH-HhccHHHHHHHHHHHHhhcCC
Q 002379 518 YKYRAVAKMEEGQIRAAISEIDRIIVFKL--SVDCLELRAWLFI-AADDYESALRDTLALLALESN 580 (929)
Q Consensus 518 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~a~~~~-~~g~~~~A~~~~~~al~~~p~ 580 (929)
+..+|.+..+.|+|++.+..+.+++...+ +.+-...+..+|- ..|....+.+.+.........
T Consensus 4 li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~ 69 (236)
T PF00244_consen 4 LIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEEN 69 (236)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcc
Confidence 56789999999999999999999998876 5555666666663 356667777776666554433
No 421
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=61.24 E-value=2.5e+02 Score=30.64 Aligned_cols=48 Identities=23% Similarity=0.305 Sum_probs=28.1
Q ss_pred cHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHcCCHHHHHHH
Q 002379 844 TYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLHLRAAFYESIGDLTSAIRD 899 (929)
Q Consensus 844 ~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~la~~~~~~g~~~~A~~~ 899 (929)
|-.|.-...+..+.|+..+|..+..+ -++ ..+...|.+.|++.+|.+.
T Consensus 237 PIGyepFv~~~~~~~~~~eA~~yI~k----~~~----~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 237 PIGYEPFVEACLKYGNKKEASKYIPK----IPD----EERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred CCChHHHHHHHHHCCCHHHHHHHHHh----CCh----HHHHHHHHHCCCHHHHHHH
Confidence 34455555566667777777777766 111 2344555666666666554
No 422
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=60.57 E-value=3e+02 Score=31.32 Aligned_cols=27 Identities=30% Similarity=0.554 Sum_probs=19.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHcC
Q 002379 751 LNNLGSIYVECGKLDQAENCYINALDI 777 (929)
Q Consensus 751 ~~~lg~~~~~~g~~~eA~~~~~~al~~ 777 (929)
+..-|.-|...|+...|..+|.+++..
T Consensus 373 ~vLAg~~~~~~~~~~~a~rcy~~a~~v 399 (414)
T PF12739_consen 373 MVLAGHRYSKAGQKKHALRCYKQALQV 399 (414)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 344466777888888888888887765
No 423
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=59.66 E-value=23 Score=38.25 Aligned_cols=54 Identities=15% Similarity=0.145 Sum_probs=42.3
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHH
Q 002379 630 NQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWI 683 (929)
Q Consensus 630 ~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~ 683 (929)
..+++.++....+++.++..+....++++|++.+..+....|.+......+...
T Consensus 299 ~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~ 352 (372)
T KOG0546|consen 299 NEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENV 352 (372)
T ss_pred ccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHh
Confidence 445557778888899999999999999999999999988888887765544433
No 424
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=59.54 E-value=34 Score=36.29 Aligned_cols=61 Identities=21% Similarity=0.082 Sum_probs=47.5
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccC-CHhHHHHHHHHHHH
Q 002379 500 KIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIA 560 (929)
Q Consensus 500 Ai~~~~kal~l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~ 560 (929)
|...|.+|+.+.|.+..+|..+|.+....|+.-.|+-.|-+++-... .+.+..++...+.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999985443 55555555555444
No 425
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=59.01 E-value=50 Score=31.12 Aligned_cols=54 Identities=20% Similarity=0.116 Sum_probs=29.8
Q ss_pred cCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHhhhhh
Q 002379 873 FKPDLQMLHLRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNRARDQASH 926 (929)
Q Consensus 873 ~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~l~~~~~~ 926 (929)
+-.........+.-....|++.-|.+....++..+|+|.++..+++.+.++...
T Consensus 66 l~GG~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 66 LAGGADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY 119 (141)
T ss_dssp HTTCHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 333334444445555566666666666666666677666666666665554433
No 426
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=59.00 E-value=1.1e+02 Score=33.78 Aligned_cols=29 Identities=24% Similarity=0.288 Sum_probs=25.2
Q ss_pred HHHHHHhhHHHHhcccHHHHHHHHHHHHh
Q 002379 419 MLALHQLGCVMFEREEYKDACYYFEAAAD 447 (929)
Q Consensus 419 a~~~~~lG~~~~~~g~y~~A~~~f~~al~ 447 (929)
-.++-.+|..|...|+.+.|++.|.++-.
T Consensus 150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~Rd 178 (466)
T KOG0686|consen 150 RRALEDLGDHYLDCGQLDNALRCYSRARD 178 (466)
T ss_pred HHHHHHHHHHHHHhccHHHHHhhhhhhhh
Confidence 35788999999999999999999998544
No 427
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=58.97 E-value=1.4e+02 Score=31.18 Aligned_cols=59 Identities=8% Similarity=-0.175 Sum_probs=39.2
Q ss_pred hHHHHHHHHHHHhccHHHHHHHHHHHHhhcCCchhhhccccHHHHHHHHHHhhcccchH
Q 002379 549 DCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPA 607 (929)
Q Consensus 549 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A 607 (929)
.....+|..|+..|++++|++.|+.+........++.-....+..+..++...|+.+..
T Consensus 179 ~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~ 237 (247)
T PF11817_consen 179 YLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDY 237 (247)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 34667899999999999999999999776655553322223444455555555554443
No 428
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=58.94 E-value=33 Score=36.05 Aligned_cols=61 Identities=13% Similarity=-0.045 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002379 642 LRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSIS 702 (929)
Q Consensus 642 ~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~ 702 (929)
.+...+..|...|.+.+|++..+++++.+|-+...+..+-.++...|+--.|...|++.-+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 4456677889999999999999999999999999999999999999998888888876543
No 429
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=58.91 E-value=1.9e+02 Score=28.47 Aligned_cols=66 Identities=9% Similarity=-0.030 Sum_probs=36.3
Q ss_pred CCChHHHHHHHHHHHH-hcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHhh
Q 002379 637 PGKSFLRFRQSLLLLR-LNCQKAAMRCLRLARNHSSSEHERLVYEGWILYD-----TGHREEALSRAEKSISI 703 (929)
Q Consensus 637 p~~~~~~~~lg~~~~~-~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~-----~g~~~eA~~~~~~al~~ 703 (929)
...|+....+|..+.. +.++++|...|..--.-+. .+..-+.+|..++. .++...|++.++.+-..
T Consensus 31 EK~Pe~C~lLgdYlEgi~knF~~A~kv~K~nCden~-y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~ 102 (248)
T KOG4014|consen 31 EKRPESCQLLGDYLEGIQKNFQAAVKVFKKNCDENS-YPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDA 102 (248)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccC-CcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhcc
Confidence 3456666666665543 3456666666655433322 24455555544432 35567777777776653
No 430
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=58.31 E-value=1.6e+02 Score=27.38 Aligned_cols=48 Identities=10% Similarity=-0.002 Sum_probs=35.8
Q ss_pred HHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002379 650 LLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAE 698 (929)
Q Consensus 650 ~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~ 698 (929)
+...+.....+.+++..+..++.++..+..+..+|.+. +..+.+..++
T Consensus 17 ~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~-~~~~ll~~l~ 64 (140)
T smart00299 17 FEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKY-DPQKEIERLD 64 (140)
T ss_pred HHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHH-CHHHHHHHHH
Confidence 34457788999999999988888788888888888765 3455555555
No 431
>PF12854 PPR_1: PPR repeat
Probab=57.60 E-value=23 Score=24.02 Aligned_cols=28 Identities=18% Similarity=0.165 Sum_probs=15.2
Q ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHH
Q 002379 875 PDLQMLHLRAAFYESIGDLTSAIRDSQA 902 (929)
Q Consensus 875 p~~~~~~~la~~~~~~g~~~~A~~~~~~ 902 (929)
|+...+..+-..|.+.|+.++|.+.|++
T Consensus 5 Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 5 PDVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred CcHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 4444444555555556666666555543
No 432
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=57.08 E-value=98 Score=34.35 Aligned_cols=74 Identities=14% Similarity=0.033 Sum_probs=50.4
Q ss_pred HHHHHHhcCHHHHHHHHHHHHhcCC--------ch----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch-
Q 002379 647 SLLLLRLNCQKAAMRCLRLARNHSS--------SE----------HERLVYEGWILYDTGHREEALSRAEKSISIERTF- 707 (929)
Q Consensus 647 g~~~~~~g~~~~A~~~l~~al~~~p--------~~----------~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~- 707 (929)
|...+++++|..|..-|..++++.. .. ..+-..+..+|.++++.+.|+....+.|.++|.+
T Consensus 183 as~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~f 262 (569)
T PF15015_consen 183 ASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYF 262 (569)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchh
Confidence 4455666667666666666665421 11 1223567899999999999999999999999988
Q ss_pred HHHHHHHHHHHhc
Q 002379 708 EAFFLKAYILADT 720 (929)
Q Consensus 708 ~~~~~l~~~l~~~ 720 (929)
..+...+.+...+
T Consensus 263 rnHLrqAavfR~L 275 (569)
T PF15015_consen 263 RNHLRQAAVFRRL 275 (569)
T ss_pred hHHHHHHHHHHHH
Confidence 5555455444433
No 433
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=56.97 E-value=21 Score=26.08 Aligned_cols=29 Identities=21% Similarity=0.181 Sum_probs=24.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhccCCCCH
Q 002379 882 LRAAFYESIGDLTSAIRDSQAALCLDPNHM 911 (929)
Q Consensus 882 ~la~~~~~~g~~~~A~~~~~~al~l~P~~~ 911 (929)
.+|..|..+|+.+.|.+.++.++. .++.+
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~-~~~~~ 32 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIE-EGDEA 32 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHH-cCCHH
Confidence 478999999999999999999995 44443
No 434
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=56.69 E-value=14 Score=32.91 Aligned_cols=30 Identities=17% Similarity=0.172 Sum_probs=28.7
Q ss_pred hhhHHHHHHHHHHhChHHHHHHHHHHHHhc
Q 002379 321 IEDALILIDYGLEERATLLVASCLQVLLRE 350 (929)
Q Consensus 321 ~~n~~~~~~~a~~~~~~~L~~~c~~~i~~~ 350 (929)
.+++..++.+|..++.+.|.+.|..++.++
T Consensus 81 ~~~~~~ll~lA~~~~~~~L~~~~~~~l~~~ 110 (111)
T PF00651_consen 81 DENVEELLELADKLQIPELKKACEKFLQES 110 (111)
T ss_dssp TTTHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhC
Confidence 899999999999999999999999999875
No 435
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=56.48 E-value=60 Score=26.83 Aligned_cols=31 Identities=10% Similarity=-0.027 Sum_probs=23.5
Q ss_pred HHHHHHHhhHHHHhcccHHHHHHHHHHHHhc
Q 002379 418 RMLALHQLGCVMFEREEYKDACYYFEAAADA 448 (929)
Q Consensus 418 ~a~~~~~lG~~~~~~g~y~~A~~~f~~al~~ 448 (929)
.|..+...+.-+=..|++++|+.+|+++++.
T Consensus 5 ~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~ 35 (75)
T cd02682 5 MARKYAINAVKAEKEGNAEDAITNYKKAIEV 35 (75)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 3455666777777888888888888888775
No 436
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=56.06 E-value=38 Score=35.64 Aligned_cols=56 Identities=21% Similarity=0.189 Sum_probs=43.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHH-HHHHHHHHcCCHHHHHHHHHHH
Q 002379 848 RYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLH-LRAAFYESIGDLTSAIRDSQAA 903 (929)
Q Consensus 848 ~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~-~la~~~~~~g~~~~A~~~~~~a 903 (929)
...+..|...|.+.+|+++.++++.++|-+...+ .+-.++..+||--.|+..|++.
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 3456677888888889988888888888776555 6677788888887787777664
No 437
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=55.44 E-value=4.7e+02 Score=31.99 Aligned_cols=205 Identities=8% Similarity=-0.107 Sum_probs=110.0
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHH-------HhCCHHHHHHHHHHHhcccC--------CHhHHHHHHHHHHHhcc
Q 002379 499 EKIVDLNYASELDPTLSFPYKYRAVAKM-------EEGQIRAAISEIDRIIVFKL--------SVDCLELRAWLFIAADD 563 (929)
Q Consensus 499 ~Ai~~~~kal~l~P~~~~a~~~~a~~~~-------~~g~~~~A~~~~~~al~~~~--------~~~~~~~~a~~~~~~g~ 563 (929)
+....|++++. |-+.+..|...+.... ..++++.-...|.+++..-. ....+...-..|+..-.
T Consensus 168 ~v~~~~ekal~-dy~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~ 246 (881)
T KOG0128|consen 168 EVEELFEKALG-DYNSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVE 246 (881)
T ss_pred HHHHHHHHHhc-ccccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHH
Confidence 56677777764 3444555555544443 34567777788888874322 11112233333444444
Q ss_pred HHHHHHHHHHHHhhcCCchhhhccccHHHHHH---HHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCCh
Q 002379 564 YESALRDTLALLALESNYMMFHGRVSGDHLVK---LLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKS 640 (929)
Q Consensus 564 ~~~A~~~~~~al~~~p~~~~~~~~~~a~~ll~---~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~~p~~~ 640 (929)
.+.-+..+...+... -+....+ ..+.... ........++.|..-+. ..+..+.+.++..|..-
T Consensus 247 ~~qv~a~~~~el~~~-~D~~~~~--~~~~~~sk~h~~~~~~~~~~~a~~~l~-----------~~~~~~e~~~q~~~~~~ 312 (881)
T KOG0128|consen 247 QRQVIALFVRELKQP-LDEDTRG--WDLSEQSKAHVYDVETKKLDDALKNLA-----------KILFKFERLVQKEPIKD 312 (881)
T ss_pred HHHHHHHHHHHHhcc-chhhhhH--HHHHHHHhcchHHHHhccHHHHHHHHH-----------HHHHHHHHHhhhhHHHH
Confidence 455666666666543 2221111 0111111 00011122222211110 01233455555566666
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHH-HHcCCHHHHHHHHHHHHhhccch-HHHHHHHHHHH
Q 002379 641 FLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWIL-YDTGHREEALSRAEKSISIERTF-EAFFLKAYILA 718 (929)
Q Consensus 641 ~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~-~~~g~~~eA~~~~~~al~~~p~~-~~~~~l~~~l~ 718 (929)
..|...-..-...|+...-...+++++.-.+.+...|...|... ..++-.+.+...+-++++..|-. ..|-....++.
T Consensus 313 q~~~~yidfe~~~G~p~ri~l~~eR~~~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~cp~tgdL~~rallAle 392 (881)
T KOG0128|consen 313 QEWMSYIDFEKKSGDPVRIQLIEERAVAEMVLDRALWIGYGVYLDTELKVPQRGVSVHPRAVRSCPWTGDLWKRALLALE 392 (881)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHhccccHHHHhhhhhhcccccccccccccccchhhcCCchHHHHHHHHHHHHH
Confidence 66777777777788888888888888888888888888777654 34555666777777888877766 44443333333
No 438
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=54.43 E-value=25 Score=22.74 Aligned_cols=29 Identities=10% Similarity=-0.136 Sum_probs=19.6
Q ss_pred cCHHHHHHHHHHHHhcCCchHHHHHHHHH
Q 002379 654 NCQKAAMRCLRLARNHSSSEHERLVYEGW 682 (929)
Q Consensus 654 g~~~~A~~~l~~al~~~p~~~~~~~~lg~ 682 (929)
|+.+.|...|++++...|.++..|...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 45667777777777777777776665544
No 439
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=53.80 E-value=4e+02 Score=30.69 Aligned_cols=21 Identities=19% Similarity=0.319 Sum_probs=15.5
Q ss_pred cCCHHHHHHHHHHHHhcCCCc
Q 002379 857 DQKEVEAVEELSKAIAFKPDL 877 (929)
Q Consensus 857 ~g~~~eA~~~l~kal~~~p~~ 877 (929)
-.++.+|+..|++.+.++..+
T Consensus 272 ~rnf~~~l~dFek~m~f~eGn 292 (711)
T COG1747 272 GRNFFEALNDFEKLMHFDEGN 292 (711)
T ss_pred cccHHHHHHHHHHHheeccCc
Confidence 557888888888888765544
No 440
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.59 E-value=3.1e+02 Score=33.46 Aligned_cols=240 Identities=16% Similarity=0.081 Sum_probs=114.4
Q ss_pred HHHHhcCHHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-ccch-HHHHHHHHHHHhcCCCCC
Q 002379 649 LLLRLNCQKAAMRCLRLARNHSSSE-HERLVYEGWILYDTGHREEALSRAEKSISI-ERTF-EAFFLKAYILADTNLDPE 725 (929)
Q Consensus 649 ~~~~~g~~~~A~~~l~~al~~~p~~-~~~~~~lg~~~~~~g~~~eA~~~~~~al~~-~p~~-~~~~~l~~~l~~~~~~~~ 725 (929)
++.+...|+-|+...+. ...+++. .+.+...|.-++..|++++|...|-+.+.. +|.. --.+ +++.
T Consensus 343 iL~kK~ly~~Ai~LAk~-~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~Vi~kf----------Ldaq 411 (933)
T KOG2114|consen 343 ILFKKNLYKVAINLAKS-QHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSEVIKKF----------LDAQ 411 (933)
T ss_pred HHHHhhhHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHHHHHHh----------cCHH
Confidence 44555667777765544 2333332 567778899999999999999999998864 3433 1111 0000
Q ss_pred ChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCH--HHHHHHHHHHHHhCCHHHHHHHH
Q 002379 726 SSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIKHT--RAHQGLARVYYLKNELKAAYDEM 803 (929)
Q Consensus 726 ~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~~--~a~~~la~~~~~~g~~~~A~~~~ 803 (929)
...... .|-+++ .++.+....--..|-.+|.+.++.+.-.+..++.- .+.. +.- ..-.++.+.+-.++|.-..
T Consensus 412 ~IknLt-~YLe~L--~~~gla~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~fd~e-~al~Ilr~snyl~~a~~LA 486 (933)
T KOG2114|consen 412 RIKNLT-SYLEAL--HKKGLANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFFDVE-TALEILRKSNYLDEAELLA 486 (933)
T ss_pred HHHHHH-HHHHHH--HHcccccchhHHHHHHHHHHhcchHHHHHHHhcCC-CcceeeeHH-HHHHHHHHhChHHHHHHHH
Confidence 000000 111111 01112222233445677888888776554443322 1100 000 0112223333344443332
Q ss_pred HHHHHHccCCHHHHHHHh-hhCCHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--Cc-h
Q 002379 804 TKLLEKAQYSASAFEKRS-EYSDREMAKNDLNMATQLDPL-RTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKP--DL-Q 878 (929)
Q Consensus 804 ~~al~~~p~~~~~~~~lg-~~g~~~~A~~~~~~al~l~p~-~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p--~~-~ 878 (929)
.+ ...+.++...+- ..+++++|+.++.. +.|. ........|..++. ...++-...+-+.+.... .. .
T Consensus 487 ~k----~~~he~vl~ille~~~ny~eAl~yi~s---lp~~e~l~~l~kyGk~Ll~-h~P~~t~~ili~~~t~~~~~~~~~ 558 (933)
T KOG2114|consen 487 TK----FKKHEWVLDILLEDLHNYEEALRYISS---LPISELLRTLNKYGKILLE-HDPEETMKILIELITELNSQGKGK 558 (933)
T ss_pred HH----hccCHHHHHHHHHHhcCHHHHHHHHhc---CCHHHHHHHHHHHHHHHHh-hChHHHHHHHHHHHhhcCCCCCCc
Confidence 22 222444433333 57888999888775 2232 22334456766665 345555555555544321 11 1
Q ss_pred HHH----HHHHHHHHcCCHHHHHHHHHHHhccCCCCHH
Q 002379 879 MLH----LRAAFYESIGDLTSAIRDSQAALCLDPNHME 912 (929)
Q Consensus 879 ~~~----~la~~~~~~g~~~~A~~~~~~al~l~P~~~~ 912 (929)
... -.-.++.-.+++..-...++...+..|+.++
T Consensus 559 ~~s~~~~~~~~i~if~~~~~~~~~Fl~~~~E~s~~s~e 596 (933)
T KOG2114|consen 559 SLSNIPDSIEFIGIFSQNYQILLNFLESMSEISPDSEE 596 (933)
T ss_pred hhhcCccchhheeeeccCHHHHHHHHHHHHhcCCCchh
Confidence 110 0112223345565555555556666665554
No 441
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=53.28 E-value=1.3e+02 Score=31.70 Aligned_cols=99 Identities=9% Similarity=0.023 Sum_probs=61.9
Q ss_pred HHHHHHHHhhHHHHhcccHHHHHHHHHHHHhc--------CccccHHHHHHHHHHhchHHHHHHHHHhhhccCCCchhhh
Q 002379 417 QRMLALHQLGCVMFEREEYKDACYYFEAAADA--------GHIYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMY 488 (929)
Q Consensus 417 ~~a~~~~~lG~~~~~~g~y~~A~~~f~~al~~--------~~~~~~a~la~~~~~~g~a~~a~~~~~~~~~~~~~~~~~~ 488 (929)
..+.+..++|..|.+.++-+.+.++..+.+.. +.....+.++..|..+.-..+.++.+..++.....+..-.
T Consensus 113 e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrN 192 (412)
T COG5187 113 EGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRN 192 (412)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhh
Confidence 45678889999999999999999988877665 2222333555566666556666666666555533222221
Q ss_pred HHHHHHhhhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHh
Q 002379 489 QERSLYNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRII 542 (929)
Q Consensus 489 ~~~~l~~~~~~Ai~~~~kal~l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al 542 (929)
+- -.+.|...+...+|.+|...+...+
T Consensus 193 Ry---------------------------K~Y~Gi~~m~~RnFkeAa~Ll~d~l 219 (412)
T COG5187 193 RY---------------------------KVYKGIFKMMRRNFKEAAILLSDIL 219 (412)
T ss_pred hH---------------------------HHHHHHHHHHHHhhHHHHHHHHHHh
Confidence 11 1234555666667777777766665
No 442
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=52.62 E-value=42 Score=33.57 Aligned_cols=52 Identities=19% Similarity=0.093 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCH
Q 002379 860 EVEAVEELSKAIAFKPDLQMLHLRAAFYESIGDLTSAIRDSQAALCLDPNHM 911 (929)
Q Consensus 860 ~~eA~~~l~kal~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~ 911 (929)
.+..++..++.+...|+...+..++.++...|+.++|.+..+++..+.|.+.
T Consensus 127 l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~~~ 178 (193)
T PF11846_consen 127 LEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRLYPADE 178 (193)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcHH
Confidence 4556667777888888888888889999999999999999999999999443
No 443
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=52.00 E-value=2.5e+02 Score=31.99 Aligned_cols=29 Identities=17% Similarity=0.350 Sum_probs=23.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhcc
Q 002379 677 LVYEGWILYDTGHREEALSRAEKSISIER 705 (929)
Q Consensus 677 ~~~lg~~~~~~g~~~eA~~~~~~al~~~p 705 (929)
+..-|.-|...|+...|..+|.+++....
T Consensus 373 ~vLAg~~~~~~~~~~~a~rcy~~a~~vY~ 401 (414)
T PF12739_consen 373 MVLAGHRYSKAGQKKHALRCYKQALQVYE 401 (414)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHhC
Confidence 34457889999999999999999987654
No 444
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=51.73 E-value=77 Score=33.16 Aligned_cols=81 Identities=17% Similarity=0.091 Sum_probs=58.3
Q ss_pred ChHHHHHHHHHHhhchhccCch---hHHHHHHHHHHHHcCCHHHHHHHHHHHHcC---C-----CHHHHHHHHHHHHHhC
Q 002379 726 SSTYVIQLLEEALRCPSDGLRK---GQALNNLGSIYVECGKLDQAENCYINALDI---K-----HTRAHQGLARVYYLKN 794 (929)
Q Consensus 726 ~~~~a~~~~e~Al~~~~~al~~---~~a~~~lg~~~~~~g~~~eA~~~~~~al~~---~-----~~~a~~~la~~~~~~g 794 (929)
.....+..+.+|+..|++.-.. ......+|..|...|++++|++.|+.+... + -......+..++...|
T Consensus 153 hs~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~ 232 (247)
T PF11817_consen 153 HSKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLG 232 (247)
T ss_pred hHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhC
Confidence 3444566777777777765432 356778999999999999999999999654 1 1246677788888888
Q ss_pred CHHHHHHHHHHH
Q 002379 795 ELKAAYDEMTKL 806 (929)
Q Consensus 795 ~~~~A~~~~~~a 806 (929)
+.+..+...-++
T Consensus 233 ~~~~~l~~~leL 244 (247)
T PF11817_consen 233 DVEDYLTTSLEL 244 (247)
T ss_pred CHHHHHHHHHHH
Confidence 888776654443
No 445
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=51.34 E-value=3e+02 Score=28.53 Aligned_cols=56 Identities=7% Similarity=-0.037 Sum_probs=34.8
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCch-HHHHHHHHHHHHH-cCCHHHHHHHHH
Q 002379 643 RFRQSLLLLRLNCQKAAMRCLRLARNHSSSE-HERLVYEGWILYD-TGHREEALSRAE 698 (929)
Q Consensus 643 ~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~-~~~~~~lg~~~~~-~g~~~eA~~~~~ 698 (929)
+..++.+....|+|++.+.++++++..++.- .+-...++.+|-. .|....+...+.
T Consensus 4 li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~ 61 (236)
T PF00244_consen 4 LIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILS 61 (236)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhh
Confidence 4567888889999999999999999887753 3333444444432 233334444333
No 446
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=50.00 E-value=5.5 Score=42.46 Aligned_cols=53 Identities=11% Similarity=0.077 Sum_probs=43.0
Q ss_pred HHHHHHHHHHhhcCChhhHHHHHHHHHHhChHHHHHHHHHHHHhchhhhcCccch
Q 002379 306 MKSACDAHLASLVGDIEDALILIDYGLEERATLLVASCLQVLLRELPSSLYNPKV 360 (929)
Q Consensus 306 l~~~C~~~l~~~~~~~~n~~~~~~~a~~~~~~~L~~~c~~~i~~~~~~v~~~~~f 360 (929)
|++.+.. -...++ ++||+.|+--++....+.|.+.|++|+-.|+.+|+.++--
T Consensus 61 Lm~yv~~-~~p~l~-~~NvvsIliSS~FL~M~~Lve~cl~y~~~~~~~Iv~~~~n 113 (317)
T PF11822_consen 61 LMRYVKG-EPPSLT-PSNVVSILISSEFLQMESLVEECLQYCHDHMSEIVASPCN 113 (317)
T ss_pred HHHHhhc-CCCcCC-cCcEEEeEehhhhhccHHHHHHHHHHHHHhHHHHHcCCCC
Confidence 3444433 233456 9999999999999999999999999999999999887643
No 447
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=49.99 E-value=3.7e+02 Score=29.20 Aligned_cols=181 Identities=15% Similarity=0.065 Sum_probs=103.1
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccC--CHhHHHHHHHHHHHhccHHHHHHHHHHHHh
Q 002379 499 EKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL--SVDCLELRAWLFIAADDYESALRDTLALLA 576 (929)
Q Consensus 499 ~Ai~~~~kal~l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~a~~~~~~g~~~~A~~~~~~al~ 576 (929)
+++..-.-...+-|..++++-..+..+++.-+... .+.. .+-.+...-.....-+-.+++...+.+++.
T Consensus 214 EairLgRll~~L~p~EPE~~GL~ALmll~~sR~~A---------R~~~~G~~vlL~dQDr~lW~r~lI~eg~all~rA~~ 284 (415)
T COG4941 214 EAIRLGRLLARLLPGEPEALGLLALMLLQESRRPA---------RFDADGEPVLLEDQDRSLWDRALIDEGLALLDRALA 284 (415)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhh---------ccCCCCCeeeccccchhhhhHHHHHHHHHHHHHHHH
Confidence 77777777888899999988887777654322111 1111 010111111112223345667777777776
Q ss_pred hcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHHHHhcCH
Q 002379 577 LESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQ 656 (929)
Q Consensus 577 ~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~lg~~~~~~g~~ 656 (929)
...--+ + .....+..++... ......|-..|..+..++..-..++.+-.+.+.......-.
T Consensus 285 ~~~pGP-Y----qlqAAIaa~HA~a--------------~~aedtDW~~I~aLYdaL~~~apSPvV~LNRAVAla~~~Gp 345 (415)
T COG4941 285 SRRPGP-Y----QLQAAIAALHARA--------------RRAEDTDWPAIDALYDALEQAAPSPVVTLNRAVALAMREGP 345 (415)
T ss_pred cCCCCh-H----HHHHHHHHHHHhh--------------cccCCCChHHHHHHHHHHHHhCCCCeEeehHHHHHHHhhhH
Confidence 543222 0 0000111111100 00001111123344555555455666777778777777777
Q ss_pred HHHHHHHHHHHhc--CCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch
Q 002379 657 KAAMRCLRLARNH--SSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF 707 (929)
Q Consensus 657 ~~A~~~l~~al~~--~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~ 707 (929)
+.++...+..... -......+...|.++.+.|+.++|...|++++.+.++.
T Consensus 346 ~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~ 398 (415)
T COG4941 346 AAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNA 398 (415)
T ss_pred HhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCCh
Confidence 8888877776554 23334566678999999999999999999999998877
No 448
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=49.77 E-value=3.1e+02 Score=30.79 Aligned_cols=61 Identities=26% Similarity=0.223 Sum_probs=46.3
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHH--HHHH--HHHHHHHcCCHHHHHHHHHHHHhh
Q 002379 643 RFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHE--RLVY--EGWILYDTGHREEALSRAEKSISI 703 (929)
Q Consensus 643 ~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~--~~~~--lg~~~~~~g~~~eA~~~~~~al~~ 703 (929)
....+..++..++|..|.+.++.....-|.... .+.. .|.-++..-++.+|.+.++..+..
T Consensus 134 ~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 134 EWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 446677788999999999999999885333333 3333 466678899999999999998764
No 449
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=49.70 E-value=1.3e+02 Score=33.36 Aligned_cols=61 Identities=28% Similarity=0.431 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHcC-----CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 002379 749 QALNNLGSIYVECGKLDQAENCYINALDI-----KHTRAHQGLARVYYLKNELKAAYDEMTKLLEK 809 (929)
Q Consensus 749 ~a~~~lg~~~~~~g~~~eA~~~~~~al~~-----~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~ 809 (929)
.++..+|.-|...|+++.|+.+|-++-.. .-...+.++-.+-...|+|..-..+-.++...
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st 216 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAEST 216 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhC
Confidence 67889999999999999999999997665 12357788888888888888777776666543
No 450
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=49.70 E-value=1e+02 Score=36.60 Aligned_cols=162 Identities=17% Similarity=0.129 Sum_probs=99.4
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHcCC-------CHHHHHHHHHHHH---HhCCHHHHHHHHHHHHHHccC-CHHH
Q 002379 748 GQALNNLGSIYVECGKLDQAENCYINALDIK-------HTRAHQGLARVYY---LKNELKAAYDEMTKLLEKAQY-SASA 816 (929)
Q Consensus 748 ~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~-------~~~a~~~la~~~~---~~g~~~~A~~~~~~al~~~p~-~~~~ 816 (929)
++...++-..|....+|+.-+...+..-++- .....+..+.++- +-|+.++|+...-.+++.... .++.
T Consensus 201 ~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vapDm 280 (1226)
T KOG4279|consen 201 PDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAPDM 280 (1226)
T ss_pred HHHHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCCce
Confidence 4566677777888888888887777665552 1122222333333 346788888888888876543 3344
Q ss_pred HHHHh-------------hhCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcC------CC
Q 002379 817 FEKRS-------------EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQ-KEVEAVEELSKAIAFK------PD 876 (929)
Q Consensus 817 ~~~lg-------------~~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g-~~~eA~~~l~kal~~~------p~ 876 (929)
|...| ..+..+.|+.+|+++.+..|. ...-.+++.++...| .++...+.-.-.+.++ ..
T Consensus 281 ~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~-~~sGIN~atLL~aaG~~Fens~Elq~IgmkLn~LlgrKG~ 359 (1226)
T KOG4279|consen 281 YCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPL-EYSGINLATLLRAAGEHFENSLELQQIGMKLNSLLGRKGA 359 (1226)
T ss_pred eeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCch-hhccccHHHHHHHhhhhccchHHHHHHHHHHHHHhhccch
Confidence 44333 224558899999999999993 344456777777776 4555555443334332 11
Q ss_pred c---hHHHHHHHHHH---HcCCHHHHHHHHHHHhccCCCC
Q 002379 877 L---QMLHLRAAFYE---SIGDLTSAIRDSQAALCLDPNH 910 (929)
Q Consensus 877 ~---~~~~~la~~~~---~~g~~~~A~~~~~~al~l~P~~ 910 (929)
. ..++-.|..+. -.+|+.+|++.-++..++.|-.
T Consensus 360 leklq~YWdV~~y~~asVLAnd~~kaiqAae~mfKLk~P~ 399 (1226)
T KOG4279|consen 360 LEKLQEYWDVATYFEASVLANDYQKAIQAAEMMFKLKPPV 399 (1226)
T ss_pred HHHHHHHHhHHHhhhhhhhccCHHHHHHHHHHHhccCCce
Confidence 1 12222232222 2589999999999999998743
No 451
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=49.60 E-value=3.4e+02 Score=28.62 Aligned_cols=66 Identities=17% Similarity=0.042 Sum_probs=41.6
Q ss_pred CChHHHHHHHHHHHHhcCHHHHHHHHHHH----------------HhcCCchHHHHHHHHH-HHHHcCCHHHHHHHHHHH
Q 002379 638 GKSFLRFRQSLLLLRLNCQKAAMRCLRLA----------------RNHSSSEHERLVYEGW-ILYDTGHREEALSRAEKS 700 (929)
Q Consensus 638 ~~~~~~~~lg~~~~~~g~~~~A~~~l~~a----------------l~~~p~~~~~~~~lg~-~~~~~g~~~eA~~~~~~a 700 (929)
.++..+..+|..+.+.|++.+|..+|-.. .+-.|...+.+...+. -|...++...|...+..-
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f 167 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIARAVLQYLCLGNLRDANELFDTF 167 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHTTBHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 57888899999999999998888776321 1234555555555544 356678888888776665
Q ss_pred Hhh
Q 002379 701 ISI 703 (929)
Q Consensus 701 l~~ 703 (929)
.+.
T Consensus 168 ~~~ 170 (260)
T PF04190_consen 168 TSK 170 (260)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 452
>PF13041 PPR_2: PPR repeat family
Probab=49.47 E-value=56 Score=24.14 Aligned_cols=39 Identities=18% Similarity=0.094 Sum_probs=28.1
Q ss_pred CcHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCchHHH
Q 002379 843 RTYPYRYRAAVLMDDQKEVEAVEELSKAIAF--KPDLQMLH 881 (929)
Q Consensus 843 ~~~~~~~la~~~~~~g~~~eA~~~l~kal~~--~p~~~~~~ 881 (929)
+...|..+-..+.+.|++++|.+.|++..+. .|+...+.
T Consensus 2 ~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~ 42 (50)
T PF13041_consen 2 DVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYN 42 (50)
T ss_pred chHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 3456777777888888888888888888764 45555444
No 453
>PF12854 PPR_1: PPR repeat
Probab=49.25 E-value=38 Score=22.92 Aligned_cols=26 Identities=12% Similarity=-0.114 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002379 674 HERLVYEGWILYDTGHREEALSRAEK 699 (929)
Q Consensus 674 ~~~~~~lg~~~~~~g~~~eA~~~~~~ 699 (929)
...|..+-..|.+.|+.++|.+.+++
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 55677777777777888777777764
No 454
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=48.68 E-value=34 Score=28.23 Aligned_cols=22 Identities=23% Similarity=0.270 Sum_probs=12.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 002379 850 RAAVLMDDQKEVEAVEELSKAI 871 (929)
Q Consensus 850 la~~~~~~g~~~eA~~~l~kal 871 (929)
.|.-+-+.|++++|+.+|++++
T Consensus 12 ~AVe~D~~gr~~eAi~~Y~~aI 33 (75)
T cd02682 12 NAVKAEKEGNAEDAITNYKKAI 33 (75)
T ss_pred HHHHHHhcCCHHHHHHHHHHHH
Confidence 3444556666666666665544
No 455
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=48.48 E-value=3.7e+02 Score=34.24 Aligned_cols=188 Identities=17% Similarity=0.069 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHH---HHHHcCCHHHHHHHHHHHHhhccch-HHHHHHHHHHHhcCCCCCChHHH
Q 002379 655 CQKAAMRCLRLARNHSSSEHERLVYEGW---ILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYV 730 (929)
Q Consensus 655 ~~~~A~~~l~~al~~~p~~~~~~~~lg~---~~~~~g~~~eA~~~~~~al~~~p~~-~~~~~l~~~l~~~~~~~~~~~~a 730 (929)
+.+-|....++ -+.+|...-.+.+--. ...+.=+.+.=+..|++|+..-... +.++.-...+....
T Consensus 852 Dl~Lal~VAq~-SqkDPkEyLP~L~el~~m~~~~rkF~ID~~L~ry~~AL~hLs~~~~~~~~e~~n~I~kh--------- 921 (1265)
T KOG1920|consen 852 DLDLALLVAQK-SQKDPKEYLPFLNELKKMETLLRKFKIDDYLKRYEDALSHLSECGETYFPECKNYIKKH--------- 921 (1265)
T ss_pred chHHHHHHHHH-hccChHHHHHHHHHHhhchhhhhheeHHHHHHHHHHHHHHHHHcCccccHHHHHHHHhc---------
Q ss_pred HHHHHHHhhchhccCchh-HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 002379 731 IQLLEEALRCPSDGLRKG-QALNNLGSIYVECGKLDQAENCYINALDIKHTRAHQGLARVYYLKNELKAAYDEMTKLLEK 809 (929)
Q Consensus 731 ~~~~e~Al~~~~~al~~~-~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~ 809 (929)
+.|.+|+..|.-..+.- ..+...|.-+...+.+++| |..|...|+.++|+..|..+
T Consensus 922 -~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~A-------------------al~Ye~~GklekAl~a~~~~--- 978 (1265)
T KOG1920|consen 922 -GLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEA-------------------ALMYERCGKLEKALKAYKEC--- 978 (1265)
T ss_pred -ccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHH-------------------HHHHHHhccHHHHHHHHHHh---
Q ss_pred ccCCHHHHHHHhhhCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Q 002379 810 AQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLHLRAAFYES 889 (929)
Q Consensus 810 ~p~~~~~~~~lg~~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~la~~~~~ 889 (929)
|++.+|+....+...-.......-..|+.-+...+++-+|-+.......-...-...+..|.-|..
T Consensus 979 --------------~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~~~av~ll~ka~~~~e 1044 (1265)
T KOG1920|consen 979 --------------GDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLSDPEEAVALLCKAKEWEE 1044 (1265)
T ss_pred --------------ccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCHHHHHHHHhhHhHHHH
No 456
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=48.45 E-value=3.6e+02 Score=28.56 Aligned_cols=102 Identities=15% Similarity=0.106 Sum_probs=48.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHcC-----CCHHHHH---HHHHHHHHhCCHHHHHHHHHH--HHH-HccCCHHHHHHHh--
Q 002379 755 GSIYVECGKLDQAENCYINALDI-----KHTRAHQ---GLARVYYLKNELKAAYDEMTK--LLE-KAQYSASAFEKRS-- 821 (929)
Q Consensus 755 g~~~~~~g~~~eA~~~~~~al~~-----~~~~a~~---~la~~~~~~g~~~~A~~~~~~--al~-~~p~~~~~~~~lg-- 821 (929)
|.......+|.-|-.+|-.+++- .+..+.. .+-..-...+..++-...++. .++ .+....++....+
T Consensus 213 GIlhcdd~dyktA~SYF~Ea~Egft~l~~d~kAc~sLkYmlLSkIMlN~~~evk~vl~~K~t~~~y~~r~I~am~avaea 292 (421)
T COG5159 213 GILHCDDRDYKTASSYFIEALEGFTLLKMDVKACVSLKYMLLSKIMLNRREEVKAVLRNKNTLKHYDDRMIRAMLAVAEA 292 (421)
T ss_pred cceeeccccchhHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhHHHHHHHHccchhHhhhhhhhHHHHHHHHHH
Confidence 55566777888888888888775 2222221 111122233333333222211 111 1111222222222
Q ss_pred ----hhCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHh
Q 002379 822 ----EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMD 856 (929)
Q Consensus 822 ----~~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~ 856 (929)
.+.++..|++.|..-+..+|---.-+..+-.++..
T Consensus 293 ~~NRsL~df~~aL~qY~~el~~D~~iRsHl~~LYD~LLe 331 (421)
T COG5159 293 FGNRSLKDFSDALAQYSDELHQDSFIRSHLQYLYDVLLE 331 (421)
T ss_pred hCCCcHhhHHHHHHHhhHHhccCHHHHHHHHHHHHHHHH
Confidence 34567788888887777666433333344444443
No 457
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=48.22 E-value=2.2e+02 Score=26.15 Aligned_cols=98 Identities=11% Similarity=0.088 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCc--hhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC----CCHH
Q 002379 708 EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLR--KGQALNNLGSIYVECGKLDQAENCYINALDI----KHTR 781 (929)
Q Consensus 708 ~~~~~l~~~l~~~~~~~~~~~~a~~~~e~Al~~~~~al~--~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~----~~~~ 781 (929)
+.|........+.....+........+++++..+...-+ .+.-+..+=..|...-+ ++.+.|..+... ..+.
T Consensus 23 ~~w~~yI~w~~~~~p~~~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~~--~~~~if~~l~~~~IG~~~A~ 100 (126)
T PF08311_consen 23 DPWLRYIKWIEENYPSGGKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADLSS--DPREIFKFLYSKGIGTKLAL 100 (126)
T ss_dssp HHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTBS--HHHHHHHHHHHHTTSTTBHH
T ss_pred HHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHcc--CHHHHHHHHHHcCccHHHHH
Confidence 445444444444333334445555566777766654422 22333333333333333 777887776654 5667
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHH
Q 002379 782 AHQGLARVYYLKNELKAAYDEMTKLL 807 (929)
Q Consensus 782 a~~~la~~~~~~g~~~~A~~~~~~al 807 (929)
.|...|..+...|++++|.+.|+..+
T Consensus 101 fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 101 FYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 88888999999999999999888764
No 458
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=47.91 E-value=4e+02 Score=28.97 Aligned_cols=116 Identities=17% Similarity=0.062 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHhhhCCHHHHHHHHHHHHhc-------CCCCcHHHHHHHHHH
Q 002379 782 AHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQL-------DPLRTYPYRYRAAVL 854 (929)
Q Consensus 782 a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~g~~~~A~~~~~~al~l-------~p~~~~~~~~la~~~ 854 (929)
..+.+|.-|...++++.|.-.|+++.... +.|.+.+.+.++. ...++..-..++...
T Consensus 127 ~n~YkaLNYm~~nD~~~ArVEfnRan~rQ----------------~~AKe~~~~ei~ka~~e~ds~k~~~N~~~~~ae~s 190 (449)
T COG3014 127 INYYKALNYMLLNDSAKARVEFNRANERQ----------------RRAKEFYYEEVQKAIKEIDSSKHNINMERSRAEVS 190 (449)
T ss_pred HHHHHHhhHHHhcchhhhHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHH
Confidence 44567778888899999999998887652 3344444443321 112222222222211
Q ss_pred Hh-cCCHHHHHHHHHHHHhcCCCch-HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHH
Q 002379 855 MD-DQKEVEAVEELSKAIAFKPDLQ-MLHLRAAFYESIGDLTSAIRDSQAALCLDPNHMETLD 915 (929)
Q Consensus 855 ~~-~g~~~eA~~~l~kal~~~p~~~-~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~ 915 (929)
.- ...|.-=...|+.- .+-.++ .-|+.|.++.-.|++.++...+..++-+.|+......
T Consensus 191 ~~i~n~Y~ny~~~yea~--~~l~npYv~Yl~~lf~a~n~dv~kg~~~~~e~~gi~qd~~~~~~ 251 (449)
T COG3014 191 EILNNTYSNYLDKYEAY--QGLLNPYVSYLSGLFYALNGDVNKGLGYLNEAYGISQDQSPFVA 251 (449)
T ss_pred HHHHHHHHHHHHHHHhh--cccchHHHHHHHHHhcccCccHhHHHHHHHHHhccCchhhHHHH
Confidence 11 11111111111111 011122 2235578888889999999999999999988544433
No 459
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=47.75 E-value=3.9e+02 Score=30.00 Aligned_cols=28 Identities=18% Similarity=0.185 Sum_probs=23.3
Q ss_pred HHHHhhHHHHhcccHHHHHHHHHHHHhc
Q 002379 421 ALHQLGCVMFEREEYKDACYYFEAAADA 448 (929)
Q Consensus 421 ~~~~lG~~~~~~g~y~~A~~~f~~al~~ 448 (929)
.....+...+..++|..|...|+.....
T Consensus 133 ~~~~~a~~l~n~~~y~aA~~~l~~l~~r 160 (379)
T PF09670_consen 133 REWRRAKELFNRYDYGAAARILEELLRR 160 (379)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 3445677789999999999999998875
No 460
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=46.65 E-value=49 Score=37.11 Aligned_cols=59 Identities=12% Similarity=0.136 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHhcccC----------CHhHHHHHHHHHHHhccHHHHHHHHHHHHh
Q 002379 517 PYKYRAVAKMEEGQIRAAISEIDRIIVFKL----------SVDCLELRAWLFIAADDYESALRDTLALLA 576 (929)
Q Consensus 517 a~~~~a~~~~~~g~~~~A~~~~~~al~~~~----------~~~~~~~~a~~~~~~g~~~~A~~~~~~al~ 576 (929)
+...+.+++.-.|||..|++.++.+- ++. ....++..|.+|+.+++|.+|++.|..++-
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~id-l~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENID-LNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccC-cccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666788889999999999887552 111 222378889999999999999999998874
No 461
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=45.33 E-value=30 Score=28.58 Aligned_cols=17 Identities=24% Similarity=0.364 Sum_probs=12.0
Q ss_pred cCCHHHHHHHHHHHHhc
Q 002379 857 DQKEVEAVEELSKAIAF 873 (929)
Q Consensus 857 ~g~~~eA~~~l~kal~~ 873 (929)
.|+|++|+..|..+++.
T Consensus 19 ~gny~eA~~lY~~ale~ 35 (75)
T cd02680 19 KGNAEEAIELYTEAVEL 35 (75)
T ss_pred hhhHHHHHHHHHHHHHH
Confidence 57777777777777653
No 462
>PF13041 PPR_2: PPR repeat family
Probab=45.25 E-value=67 Score=23.69 Aligned_cols=28 Identities=25% Similarity=0.310 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHcC
Q 002379 750 ALNNLGSIYVECGKLDQAENCYINALDI 777 (929)
Q Consensus 750 a~~~lg~~~~~~g~~~eA~~~~~~al~~ 777 (929)
.|+.+-..+.+.|++++|.+.|++..+.
T Consensus 5 ~yn~li~~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 5 TYNTLISGYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 4667777778888888888888887766
No 463
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=44.35 E-value=35 Score=38.22 Aligned_cols=58 Identities=10% Similarity=0.060 Sum_probs=46.0
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcC---------CchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002379 644 FRQSLLLLRLNCQKAAMRCLRLARNHS---------SSEHERLVYEGWILYDTGHREEALSRAEKSIS 702 (929)
Q Consensus 644 ~~lg~~~~~~g~~~~A~~~l~~al~~~---------p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~ 702 (929)
..+..++.-+|+|..|++.++.. +++ +-+...++..|.+|+.+++|.+|++.|..++-
T Consensus 126 igLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 126 IGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566788899999999988763 222 22355788999999999999999999998874
No 464
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=43.44 E-value=26 Score=39.30 Aligned_cols=44 Identities=11% Similarity=0.258 Sum_probs=36.7
Q ss_pred cCChhhHHHHHHHHHHhChHHHHHHHHHHHHhchhhhcCccchhhhcc
Q 002379 318 VGDIEDALILIDYGLEERATLLVASCLQVLLRELPSSLYNPKVMKIFC 365 (929)
Q Consensus 318 ~~~~~n~~~~~~~a~~~~~~~L~~~c~~~i~~~~~~v~~~~~f~~L~~ 365 (929)
+. .|||+.++..|.+|..+.|.+.|.+||..++.. ...|+.|+-
T Consensus 185 ~~-~dtvi~tl~~AkKY~VpaLer~CVkflr~~l~~---~naf~~L~q 228 (521)
T KOG2075|consen 185 LA-ADTVITTLYAAKKYLVPALERQCVKFLRKNLMA---DNAFLELFQ 228 (521)
T ss_pred hh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCC---hHHHHHHHH
Confidence 45 899999999999999999999999999987643 356666544
No 465
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=43.43 E-value=1.1e+02 Score=30.93 Aligned_cols=59 Identities=17% Similarity=0.096 Sum_probs=53.2
Q ss_pred HHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch
Q 002379 649 LLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF 707 (929)
Q Consensus 649 ~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~ 707 (929)
-+.+.+...+|+...+.-++..|.+......+-.++.-.|++++|...++-+-++.|++
T Consensus 10 eLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~ 68 (273)
T COG4455 10 ELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD 68 (273)
T ss_pred HHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence 45567888999999999999999999888888999999999999999999999999987
No 466
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=43.32 E-value=1.6e+02 Score=34.13 Aligned_cols=44 Identities=16% Similarity=0.169 Sum_probs=31.7
Q ss_pred HHHHHHHHHHhc-----CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHh
Q 002379 499 EKIVDLNYASEL-----DPTLSFPYKYRAVAKMEEGQIRAAISEIDRII 542 (929)
Q Consensus 499 ~Ai~~~~kal~l-----~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al 542 (929)
.++..|.+|+.. +-....+|.++|-.+++.++|.+|+..+..+-
T Consensus 297 ~~~~l~~~AI~sa~~~Y~n~HvYPYty~gg~~yR~~~~~eA~~~Wa~aa 345 (618)
T PF05053_consen 297 TPLELFNEAISSARTYYNNHHVYPYTYLGGYYYRHKRYREALRSWAEAA 345 (618)
T ss_dssp -HHHHHHHHHHHHHHHCTT--SHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhcCCccccceehhhHHHHHHHHHHHHHHHHHHH
Confidence 556666666653 34567889999999999999999998888773
No 467
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.30 E-value=6.3e+02 Score=29.65 Aligned_cols=48 Identities=27% Similarity=0.184 Sum_probs=29.5
Q ss_pred cCHHHHHHHHHHHHhc------------CCchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002379 654 NCQKAAMRCLRLARNH------------SSSEHERLVYEGWILYDTGHREEALSRAEKSI 701 (929)
Q Consensus 654 g~~~~A~~~l~~al~~------------~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al 701 (929)
+.|++|...|.-+... .|-+.+.+..++.+...+|+.+-|....++++
T Consensus 252 ~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~L 311 (665)
T KOG2422|consen 252 NSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGL 311 (665)
T ss_pred hHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 3455666666655443 34445666777777777777766666666655
No 468
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=41.63 E-value=4.6e+02 Score=27.86 Aligned_cols=135 Identities=12% Similarity=0.009 Sum_probs=72.8
Q ss_pred CCCChHHH--HHHHHHHHHhcCHHHHHHHHHHHHhc----C--CchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch
Q 002379 636 DPGKSFLR--FRQSLLLLRLNCQKAAMRCLRLARNH----S--SSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF 707 (929)
Q Consensus 636 ~p~~~~~~--~~lg~~~~~~g~~~~A~~~l~~al~~----~--p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~ 707 (929)
+|.....| +..+..-......++-++.+.+.++. + ....+++.++|..|.+.++.+.+.+...+.++-.-..
T Consensus 69 n~kt~a~~ikfD~~~~n~l~kkneeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~st 148 (412)
T COG5187 69 NPKTSASVIKFDRGRMNTLLKKNEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMST 148 (412)
T ss_pred CCcccchheehhhHHHHHHHHhhHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhc
Confidence 45443332 33444444445555556666444432 2 1226789999999999999999999888877643221
Q ss_pred ----H---HHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccC--c-hhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC
Q 002379 708 ----E---AFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGL--R-KGQALNNLGSIYVECGKLDQAENCYINALDI 777 (929)
Q Consensus 708 ----~---~~~~l~~~l~~~~~~~~~~~~a~~~~e~Al~~~~~al--~-~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~ 777 (929)
+ ....+|..+.+. ...-+.++.+-..+++.- + ....-...|.......++.+|...+-..+..
T Consensus 149 g~KiDv~l~kiRlg~~y~d~-------~vV~e~lE~~~~~iEkGgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~t 221 (412)
T COG5187 149 GLKIDVFLCKIRLGLIYGDR-------KVVEESLEVADDIIEKGGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDILPT 221 (412)
T ss_pred ccchhhHHHHHHHHHhhccH-------HHHHHHHHHHHHHHHhCCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhcc
Confidence 1 122333333333 222233333333333331 1 1223334455556667777777777766654
No 469
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=40.60 E-value=2.5e+02 Score=29.68 Aligned_cols=125 Identities=11% Similarity=-0.049 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHHccCCHHHHHHHhh------------hCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhc--CCHHH
Q 002379 797 KAAYDEMTKLLEKAQYSASAFEKRSE------------YSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDD--QKEVE 862 (929)
Q Consensus 797 ~~A~~~~~~al~~~p~~~~~~~~lg~------------~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~--g~~~e 862 (929)
..|++.-...+..+|....+|..+-. ..=.+.-+.....+++-+|.+-.+|..+-.++... .++..
T Consensus 49 ~~aLklt~elid~npe~ytiwnyr~~I~~h~~~~sedk~~~ldneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~~r 128 (328)
T COG5536 49 VRALKLTQELIDKNPEFYTIWNYRFSILKHVQMVSEDKEHLLDNELDFLDEALKDNPKNYQIWHHRQWMLELFPKPSWGR 128 (328)
T ss_pred HHHHHHhHHHHhhCHHHHHHHhhHHHHHhhhhhhcccchhhhhcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCCcccch
Confidence 35666666666666666555544430 01125566778888889999999999888887765 56777
Q ss_pred HHHHHHHHHhcCCCc-hHHHHHHHHH------HHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 002379 863 AVEELSKAIAFKPDL-QMLHLRAAFY------ESIGDLTSAIRDSQAALCLDPNHMETLDLYNRAR 921 (929)
Q Consensus 863 A~~~l~kal~~~p~~-~~~~~la~~~------~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~l~ 921 (929)
-+...++.++.++.+ ..|+++-.+. ..-.++..-.++-..++..|+.|..+|..+-.+.
T Consensus 129 El~itkklld~DsrNyH~W~YR~~vl~~ie~~~N~S~~k~e~eytt~~I~tdi~N~SaW~~r~~~~ 194 (328)
T COG5536 129 ELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSDLKHELEYTTSLIETDIYNNSAWHHRYIWI 194 (328)
T ss_pred hHHHHHHHhcccccccceeeeEeeeeecchhhccchhHHHHHHhHHHHHhhCCCChHHHHHHHHHH
Confidence 788888899888876 4454332222 2233444456666777888999999998885443
No 470
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.32 E-value=2.4e+02 Score=33.09 Aligned_cols=50 Identities=12% Similarity=-0.094 Sum_probs=36.0
Q ss_pred HHHHHhCCHHHHHHHHHHHhcccCCHhHHHHHHHHHHHhccHHHHHHHHHHHHh
Q 002379 523 VAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLA 576 (929)
Q Consensus 523 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~ 576 (929)
.+..+.|+++.|.....++- ++.-|..+|.+.+..+++..|.+.+.++..
T Consensus 645 elal~lgrl~iA~~la~e~~----s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d 694 (794)
T KOG0276|consen 645 ELALKLGRLDIAFDLAVEAN----SEVKWRQLGDAALSAGELPLASECFLRARD 694 (794)
T ss_pred hhhhhcCcHHHHHHHHHhhc----chHHHHHHHHHHhhcccchhHHHHHHhhcc
Confidence 34557788888876665552 345577788888888888888888887654
No 471
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=39.03 E-value=41 Score=21.45 Aligned_cols=25 Identities=24% Similarity=0.325 Sum_probs=15.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 002379 751 LNNLGSIYVECGKLDQAENCYINAL 775 (929)
Q Consensus 751 ~~~lg~~~~~~g~~~eA~~~~~~al 775 (929)
|+.+-..|...|++++|.+.|++..
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~ 27 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMR 27 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHh
Confidence 4555566666666666666666554
No 472
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=38.54 E-value=6.8e+02 Score=28.95 Aligned_cols=58 Identities=12% Similarity=0.111 Sum_probs=33.5
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCchHHH-HH--------------------HHHHHHcCCHHHHHHHHHHHhccCCCC
Q 002379 853 VLMDDQKEVEAVEELSKAIAFKPDLQMLH-LR--------------------AAFYESIGDLTSAIRDSQAALCLDPNH 910 (929)
Q Consensus 853 ~~~~~g~~~eA~~~l~kal~~~p~~~~~~-~l--------------------a~~~~~~g~~~~A~~~~~~al~l~P~~ 910 (929)
-|....++.+|+..+...++.+..+.-+. .+ ..+-..-.++..|+..|++.+..+..|
T Consensus 214 ~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd~y~~~~~~e~yl~~s~i~~~~rnf~~~l~dFek~m~f~eGn 292 (711)
T COG1747 214 KYSENENWTEAIRILKHILEHDEKDVWARKEIIENLRDKYRGHSQLEEYLKISNISQSGRNFFEALNDFEKLMHFDEGN 292 (711)
T ss_pred HhccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHhccchhHHHHHHhcchhhccccHHHHHHHHHHHheeccCc
Confidence 34455677777777777776665543222 11 122222346777888888877776554
No 473
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=38.15 E-value=1.4e+02 Score=35.94 Aligned_cols=79 Identities=20% Similarity=0.284 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHh--cCCHHHHHHHHHHHHhcCCCchHHH-HHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 002379 845 YPYRYRAAVLMD--DQKEVEAVEELSKAIAFKPDLQMLH-LRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNRAR 921 (929)
Q Consensus 845 ~~~~~la~~~~~--~g~~~eA~~~l~kal~~~p~~~~~~-~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~l~ 921 (929)
....+.+.+++. .|+|..++....-++...|....+. -++.+|...+..+-|++...-....+|++.++.....+++
T Consensus 92 ~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~eif~elk 171 (748)
T KOG4151|consen 92 TLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLKRARKYEALNKLDLAVRDLRIVEKMDPSNVSASEIFEELK 171 (748)
T ss_pred hHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Confidence 334455555554 4588888888888888777765444 4578888888888888887777888888877777666655
Q ss_pred hh
Q 002379 922 DQ 923 (929)
Q Consensus 922 ~~ 923 (929)
..
T Consensus 172 ~l 173 (748)
T KOG4151|consen 172 GL 173 (748)
T ss_pred HH
Confidence 43
No 474
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=37.85 E-value=1.5e+02 Score=24.72 Aligned_cols=31 Identities=6% Similarity=0.142 Sum_probs=23.6
Q ss_pred HHHHHHHhhHHHHhcccHHHHHHHHHHHHhc
Q 002379 418 RMLALHQLGCVMFEREEYKDACYYFEAAADA 448 (929)
Q Consensus 418 ~a~~~~~lG~~~~~~g~y~~A~~~f~~al~~ 448 (929)
.+..+...|...=..|+|++|+.+|.++++.
T Consensus 5 ~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~ 35 (77)
T cd02683 5 AAKEVLKRAVELDQEGRFQEALVCYQEGIDL 35 (77)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3455666677777888999999998888875
No 475
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=37.82 E-value=64 Score=25.97 Aligned_cols=31 Identities=16% Similarity=0.225 Sum_probs=24.8
Q ss_pred HHHHHHHhhHHHHhcccHHHHHHHHHHHHhc
Q 002379 418 RMLALHQLGCVMFEREEYKDACYYFEAAADA 448 (929)
Q Consensus 418 ~a~~~~~lG~~~~~~g~y~~A~~~f~~al~~ 448 (929)
.+..+...|...=..|+|++|+.+|.++++.
T Consensus 4 ~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~ 34 (69)
T PF04212_consen 4 KAIELIKKAVEADEAGNYEEALELYKEAIEY 34 (69)
T ss_dssp HHHHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 4455667777788889999999999998875
No 476
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=37.57 E-value=44 Score=27.74 Aligned_cols=17 Identities=24% Similarity=0.141 Sum_probs=11.4
Q ss_pred hcCCHHHHHHHHHHHHh
Q 002379 856 DDQKEVEAVEELSKAIA 872 (929)
Q Consensus 856 ~~g~~~eA~~~l~kal~ 872 (929)
+.|+|++|+.+|..+++
T Consensus 18 ~~g~y~eA~~~Y~~aie 34 (76)
T cd02681 18 QEGRYSEAVFYYKEAAQ 34 (76)
T ss_pred HccCHHHHHHHHHHHHH
Confidence 36777777777776654
No 477
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=36.51 E-value=56 Score=21.83 Aligned_cols=29 Identities=28% Similarity=0.366 Sum_probs=22.0
Q ss_pred HHHHhhHHHHhc----ccHHHHHHHHHHHHhcC
Q 002379 421 ALHQLGCVMFER----EEYKDACYYFEAAADAG 449 (929)
Q Consensus 421 ~~~~lG~~~~~~----g~y~~A~~~f~~al~~~ 449 (929)
+.+.+|..|..- .++.+|..+|+++.+.+
T Consensus 3 a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~~g 35 (36)
T smart00671 3 AQYNLGQMYEYGLGVKKDLEKALEYYKKAAELG 35 (36)
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHcc
Confidence 556777776642 48999999999987653
No 478
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=36.36 E-value=57 Score=20.73 Aligned_cols=26 Identities=15% Similarity=0.033 Sum_probs=17.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 002379 847 YRYRAAVLMDDQKEVEAVEELSKAIA 872 (929)
Q Consensus 847 ~~~la~~~~~~g~~~eA~~~l~kal~ 872 (929)
|..+-..|.+.|++++|.+.|++..+
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhH
Confidence 45556667777777777777776544
No 479
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=36.32 E-value=80 Score=31.48 Aligned_cols=52 Identities=15% Similarity=0.003 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHhcccCCHhHHHHHHHHHHHhccHHHHHHHHHHHHhhcCCch
Q 002379 531 IRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLALESNYM 582 (929)
Q Consensus 531 ~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~ 582 (929)
.+..++..++.+...|+|..+..++.++...|+.++|....+++....|.+.
T Consensus 127 l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~~~ 178 (193)
T PF11846_consen 127 LEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRLYPADE 178 (193)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcHH
Confidence 3445566677777788899999999999999999999999999999999544
No 480
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=36.23 E-value=66 Score=26.68 Aligned_cols=31 Identities=19% Similarity=0.415 Sum_probs=25.4
Q ss_pred HHHHHHHhhHHHHhcccHHHHHHHHHHHHhc
Q 002379 418 RMLALHQLGCVMFEREEYKDACYYFEAAADA 448 (929)
Q Consensus 418 ~a~~~~~lG~~~~~~g~y~~A~~~f~~al~~ 448 (929)
++..+...+.-.=..|+|++|+.+|..+++.
T Consensus 5 ~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~ 35 (76)
T cd02681 5 DAVQFARLAVQRDQEGRYSEAVFYYKEAAQL 35 (76)
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4556667777788889999999999999875
No 481
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=35.65 E-value=2.8e+02 Score=29.85 Aligned_cols=94 Identities=17% Similarity=0.051 Sum_probs=61.9
Q ss_pred HHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCC--------CChHHHHHHHHHHHHhcCHHHHHH
Q 002379 590 GDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDP--------GKSFLRFRQSLLLLRLNCQKAAMR 661 (929)
Q Consensus 590 a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~~p--------~~~~~~~~lg~~~~~~g~~~~A~~ 661 (929)
....++.+|...++|..|-..+ .++..+. .....+..+|.+|...++..+|..
T Consensus 105 irl~LAsiYE~Eq~~~~aaq~L-------------------~~I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~ 165 (399)
T KOG1497|consen 105 IRLHLASIYEKEQNWRDAAQVL-------------------VGIPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEA 165 (399)
T ss_pred HHHHHHHHHHHhhhHHHHHHHH-------------------hccCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 3455788888989998884333 1111111 123467889999999999999999
Q ss_pred HHHHHH--hcCCchHHHHHH----HHHHHHHcCCHHHHHHHHHHHHh
Q 002379 662 CLRLAR--NHSSSEHERLVY----EGWILYDTGHREEALSRAEKSIS 702 (929)
Q Consensus 662 ~l~~al--~~~p~~~~~~~~----lg~~~~~~g~~~eA~~~~~~al~ 702 (929)
+..++- ..+..+...... .|+++-..+++-||...|-+...
T Consensus 166 ~inRaSil~a~~~Ne~Lqie~kvc~ARvlD~krkFlEAAqrYyels~ 212 (399)
T KOG1497|consen 166 YINRASILQAESSNEQLQIEYKVCYARVLDYKRKFLEAAQRYYELSQ 212 (399)
T ss_pred HHHHHHHhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888873 333455554433 36666677888888777766553
No 482
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=35.22 E-value=4.4e+02 Score=28.55 Aligned_cols=97 Identities=13% Similarity=0.206 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch----HH---HHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccC-
Q 002379 674 HERLVYEGWILYDTGHREEALSRAEKSISIERTF----EA---FFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGL- 745 (929)
Q Consensus 674 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~----~~---~~~l~~~l~~~~~~~~~~~~a~~~~e~Al~~~~~al- 745 (929)
.+++...|..|.+.|+.+.|.+.+.+..+..-.. +. ...+|..+.+ ..-.-...++|...+++.-
T Consensus 104 ~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D-------~~lV~~~iekak~liE~GgD 176 (393)
T KOG0687|consen 104 REAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLD-------HDLVTESIEKAKSLIEEGGD 176 (393)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhcc-------HHHHHHHHHHHHHHHHhCCC
Confidence 5677788888888888888888777665432111 11 1122222222 2222334455555444441
Q ss_pred -c-hhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC
Q 002379 746 -R-KGQALNNLGSIYVECGKLDQAENCYINALDI 777 (929)
Q Consensus 746 -~-~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~ 777 (929)
+ +...-...|.......++.+|...|-.++..
T Consensus 177 WeRrNRlKvY~Gly~msvR~Fk~Aa~Lfld~vsT 210 (393)
T KOG0687|consen 177 WERRNRLKVYQGLYCMSVRNFKEAADLFLDSVST 210 (393)
T ss_pred hhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHccc
Confidence 1 2233333455556667888888888777765
No 483
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=34.92 E-value=81 Score=21.52 Aligned_cols=30 Identities=30% Similarity=0.581 Sum_probs=20.1
Q ss_pred HHHHHhh--HHHHhc-----ccHHHHHHHHHHHHhcC
Q 002379 420 LALHQLG--CVMFER-----EEYKDACYYFEAAADAG 449 (929)
Q Consensus 420 ~~~~~lG--~~~~~~-----g~y~~A~~~f~~al~~~ 449 (929)
.+.+.+| ..+..- .++++|..+|+++.+.+
T Consensus 2 ~A~~~lg~~~~~~~g~~g~~~d~~~A~~~~~~Aa~~g 38 (39)
T PF08238_consen 2 EAQYNLGMYYMYYNGKGGVPKDYEKAFKWYEKAAEQG 38 (39)
T ss_dssp HHHHHHHHHHHHHHTSTSSCHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHhhhhccCCccccccchHHHHHHHHHcc
Confidence 3556677 333322 36899999999998754
No 484
>KOG3342 consensus Signal peptidase I [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.80 E-value=23 Score=33.02 Aligned_cols=19 Identities=32% Similarity=0.340 Sum_probs=15.9
Q ss_pred CCC-EEEEEcCeEEEe-ehhH
Q 002379 217 DDS-VTFCVRDKEISF-VRNK 235 (929)
Q Consensus 217 ~~~-v~~~v~~~~~~~-hr~i 235 (929)
..+ |+|.|+|++||+ ||+|
T Consensus 80 vGdivVf~vegR~IPiVHRvi 100 (180)
T KOG3342|consen 80 VGDIVVFKVEGREIPIVHRVI 100 (180)
T ss_pred eccEEEEEECCccCchhHHHH
Confidence 345 999999999995 8887
No 485
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=34.68 E-value=79 Score=32.51 Aligned_cols=43 Identities=14% Similarity=0.017 Sum_probs=31.0
Q ss_pred HHHHHHH---------HcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHhhhh
Q 002379 882 LRAAFYE---------SIGDLTSAIRDSQAALCLDPNHMETLDLYNRARDQAS 925 (929)
Q Consensus 882 ~la~~~~---------~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~l~~~~~ 925 (929)
..|..+. ..++...|+.++++|++++|+- .+...+++|.....
T Consensus 174 ~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~-GVK~~i~~l~~~lr 225 (230)
T PHA02537 174 AAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKC-GVKKDIERLERRLK 225 (230)
T ss_pred HHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCC-ChHHHHHHHHHHHh
Confidence 4477663 3467889999999999999874 45566666665543
No 486
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=34.56 E-value=1e+02 Score=36.66 Aligned_cols=124 Identities=18% Similarity=0.175 Sum_probs=69.4
Q ss_pred ChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCch------HHHHHHHHHHHHH---cCCHHHHHHHHHHHHhhccch--
Q 002379 639 KSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE------HERLVYEGWILYD---TGHREEALSRAEKSISIERTF-- 707 (929)
Q Consensus 639 ~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~------~~~~~~lg~~~~~---~g~~~eA~~~~~~al~~~p~~-- 707 (929)
.++...++-..|....+|+.-++..+..-++ |+. +.+.+..+.++-+ -|+.++|+...-.+++.....
T Consensus 200 ~~d~V~nlmlSyRDvQdY~amirLVe~Lk~i-P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vap 278 (1226)
T KOG4279|consen 200 HPDTVSNLMLSYRDVQDYDAMIRLVEDLKRI-PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAP 278 (1226)
T ss_pred CHHHHHHHHhhhccccchHHHHHHHHHHHhC-cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCC
Confidence 4566677777888888998888877665443 422 1222333444433 477888888887777765433
Q ss_pred HHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCH-HHHHHH
Q 002379 708 EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIKHT-RAHQGL 786 (929)
Q Consensus 708 ~~~~~l~~~l~~~~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~~-~a~~~l 786 (929)
+.+..-|.+|.+.- ++.-|...+..+.|+.+|++|.+..+. .+-.++
T Consensus 279 Dm~Cl~GRIYKDmF--------------------------------~~S~ytDa~s~~~a~~WyrkaFeveP~~~sGIN~ 326 (1226)
T KOG4279|consen 279 DMYCLCGRIYKDMF--------------------------------IASNYTDAESLNHAIEWYRKAFEVEPLEYSGINL 326 (1226)
T ss_pred ceeeeechhhhhhh--------------------------------hccCCcchhhHHHHHHHHHHHhccCchhhccccH
Confidence 34444444444332 112223344556667777777666433 234455
Q ss_pred HHHHHHhCC
Q 002379 787 ARVYYLKNE 795 (929)
Q Consensus 787 a~~~~~~g~ 795 (929)
+.++...|+
T Consensus 327 atLL~aaG~ 335 (1226)
T KOG4279|consen 327 ATLLRAAGE 335 (1226)
T ss_pred HHHHHHhhh
Confidence 555555554
No 487
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=34.11 E-value=3.9e+02 Score=31.15 Aligned_cols=83 Identities=23% Similarity=0.282 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHcCC---HHHHHHHHHHHHhhccchHHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCch--hHH
Q 002379 676 RLVYEGWILYDTGH---REEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRK--GQA 750 (929)
Q Consensus 676 ~~~~lg~~~~~~g~---~~eA~~~~~~al~~~p~~~~~~~l~~~l~~~~~~~~~~~~a~~~~e~Al~~~~~al~~--~~a 750 (929)
....+-++++..|. |.-|+-.+-..-++.|.. .....+..|.+|+...+..-.. .--
T Consensus 259 lqq~lLw~lyd~ghl~~YPmALg~LadLeEi~pt~------------------~r~~~~~l~~~AI~sa~~~Y~n~HvYP 320 (618)
T PF05053_consen 259 LQQDLLWLLYDMGHLARYPMALGNLADLEEIDPTP------------------GRPTPLELFNEAISSARTYYNNHHVYP 320 (618)
T ss_dssp HHHHHHHHHHHTTTTTT-HHHHHHHHHHHHHS--T------------------TS--HHHHHHHHHHHHHHHCTT--SHH
T ss_pred HHHHHHHHHHhcCchhhCchhhhhhHhHHhhccCC------------------CCCCHHHHHHHHHHHHHHHhcCCcccc
Confidence 33445556666554 566666666665555543 1122234556666544444332 245
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHc
Q 002379 751 LNNLGSIYVECGKLDQAENCYINALD 776 (929)
Q Consensus 751 ~~~lg~~~~~~g~~~eA~~~~~~al~ 776 (929)
|..+|..+++.+++.+|+..+-.|-.
T Consensus 321 Yty~gg~~yR~~~~~eA~~~Wa~aa~ 346 (618)
T PF05053_consen 321 YTYLGGYYYRHKRYREALRSWAEAAD 346 (618)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred ceehhhHHHHHHHHHHHHHHHHHHHH
Confidence 77888999999999999988877643
No 488
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=33.26 E-value=2.1e+02 Score=23.45 Aligned_cols=32 Identities=16% Similarity=0.157 Sum_probs=23.9
Q ss_pred HHHHHHHHhhHHHHhcccHHHHHHHHHHHHhc
Q 002379 417 QRMLALHQLGCVMFEREEYKDACYYFEAAADA 448 (929)
Q Consensus 417 ~~a~~~~~lG~~~~~~g~y~~A~~~f~~al~~ 448 (929)
+.+..+...|...-..|++++|+.+|.++++.
T Consensus 6 ~~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~ 37 (77)
T smart00745 6 SKAKELISKALKADEAGDYEEALELYKKAIEY 37 (77)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34445556677777789999999999888875
No 489
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=32.87 E-value=72 Score=20.72 Aligned_cols=26 Identities=19% Similarity=0.333 Sum_probs=15.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHc
Q 002379 751 LNNLGSIYVECGKLDQAENCYINALD 776 (929)
Q Consensus 751 ~~~lg~~~~~~g~~~eA~~~~~~al~ 776 (929)
|+.+-..|.+.|++++|.+.|.+..+
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44555566666666666666665543
No 490
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=32.46 E-value=2.3e+02 Score=26.20 Aligned_cols=114 Identities=17% Similarity=0.097 Sum_probs=56.7
Q ss_pred HHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHhh---hCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHH
Q 002379 789 VYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSE---YSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVE 865 (929)
Q Consensus 789 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~---~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~ 865 (929)
.+...+.....+.+++.++..++.++..+..+.. .-+..+.+..++. .+ ...-....+.+..+.+.+++++-
T Consensus 16 ~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~~~~ll~~l~~----~~-~~yd~~~~~~~c~~~~l~~~~~~ 90 (140)
T smart00299 16 LFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYDPQKEIERLDN----KS-NHYDIEKVGKLCEKAKLYEEAVE 90 (140)
T ss_pred HHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHCHHHHHHHHHh----cc-ccCCHHHHHHHHHHcCcHHHHHH
Confidence 3344567788888888887776655555544441 1233444444442 11 11112223344455556666666
Q ss_pred HHHHHHhcCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHH
Q 002379 866 ELSKAIAFKPDLQMLHLRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYN 918 (929)
Q Consensus 866 ~l~kal~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~ 918 (929)
.+.+. .....+. ..+....++++.|++++.+ +++++.|....
T Consensus 91 l~~k~----~~~~~Al--~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~ 132 (140)
T smart00299 91 LYKKD----GNFKDAI--VTLIEHLGNYEKAIEYFVK-----QNNPELWAEVL 132 (140)
T ss_pred HHHhh----cCHHHHH--HHHHHcccCHHHHHHHHHh-----CCCHHHHHHHH
Confidence 66543 1111111 1111223677777777776 34566665544
No 491
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=32.15 E-value=70 Score=26.78 Aligned_cols=16 Identities=13% Similarity=0.119 Sum_probs=9.6
Q ss_pred cCCHHHHHHHHHHHHh
Q 002379 857 DQKEVEAVEELSKAIA 872 (929)
Q Consensus 857 ~g~~~eA~~~l~kal~ 872 (929)
.|+.++|+..|++++.
T Consensus 21 ~g~~e~Al~~Y~~gi~ 36 (79)
T cd02679 21 WGDKEQALAHYRKGLR 36 (79)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 4666666666666553
No 492
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=32.00 E-value=1.6e+02 Score=26.95 Aligned_cols=64 Identities=19% Similarity=0.255 Sum_probs=46.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc----------------hHHHHHHHHHHHcCCHHHHHHHHHH----Hhcc
Q 002379 847 YRYRAAVLMDDQKEVEAVEELSKAIAFKPDL----------------QMLHLRAAFYESIGDLTSAIRDSQA----ALCL 906 (929)
Q Consensus 847 ~~~la~~~~~~g~~~eA~~~l~kal~~~p~~----------------~~~~~la~~~~~~g~~~~A~~~~~~----al~l 906 (929)
+..+|...++.+++-.++-.|++|+.+..+. ..-+++|.++..+||.+-.+++++- ++.+
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltL 83 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTL 83 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHh
Confidence 4567888888888888888888887542111 1234889999999999999999864 4555
Q ss_pred CCCC
Q 002379 907 DPNH 910 (929)
Q Consensus 907 ~P~~ 910 (929)
-|+-
T Consensus 84 iPQC 87 (140)
T PF10952_consen 84 IPQC 87 (140)
T ss_pred ccCC
Confidence 5653
No 493
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=30.56 E-value=2.2e+02 Score=26.91 Aligned_cols=53 Identities=21% Similarity=0.060 Sum_probs=38.4
Q ss_pred CHhHHHHHHHHHHHhccHHHHHHHHHHHHhhcCCchhhhccccHHHHHHHHHHhhcccc
Q 002379 547 SVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWS 605 (929)
Q Consensus 547 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~ 605 (929)
..+....++.-.+..|++.-|......++..+|++. .+..+.+.++.+.+.-.
T Consensus 69 G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~------~ar~l~A~al~~lg~~~ 121 (141)
T PF14863_consen 69 GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNE------EARQLKADALEQLGYQS 121 (141)
T ss_dssp CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-H------HHHHHHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcH------HHHHHHHHHHHHHHHhc
Confidence 455666777777889999999999999999999998 66777777776655533
No 494
>PF12178 INCENP_N: Chromosome passenger complex (CPC) protein INCENP N terminal; InterPro: IPR022006 This domain family is found in eukaryotes, and is approximately 40 amino acids in length. INCENP is a regulatory protein in the chromosome passenger complex. It is involved in regulation of the catalytic protein Aurora B. It performs this function in association with two other proteins - Survivin and Borealin. These proteins form a tight three-helical bundle. The N-terminal domain is the domain involved in formation of this three helical bundle. ; PDB: 2QFA_C.
Probab=28.91 E-value=28 Score=24.35 Aligned_cols=23 Identities=13% Similarity=0.439 Sum_probs=19.2
Q ss_pred ChHhHHHHHHHHHHhhcCChhhH
Q 002379 302 CCEEMKSACDAHLASLVGDIEDA 324 (929)
Q Consensus 302 ~~~~l~~~C~~~l~~~~~~~~n~ 324 (929)
++.+|.+.|.+.|.+.+.++||+
T Consensus 3 g~~~L~e~~~~Kl~efl~~vd~~ 25 (38)
T PF12178_consen 3 GPQHLLEVCDQKLQEFLCNVDNK 25 (38)
T ss_dssp SGGGHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHhccch
Confidence 46688999999999999867775
No 495
>PF10932 DUF2783: Protein of unknown function (DUF2783); InterPro: IPR021233 This is a bacterial family of uncharacterised protein.
Probab=28.35 E-value=1.7e+02 Score=22.97 Aligned_cols=49 Identities=22% Similarity=0.376 Sum_probs=36.7
Q ss_pred CchhhHHHHHHHHHHhhhccccchhhHHHHHHHHh--hccChhHHHHHHHHHHhh
Q 002379 82 KPIHCVKSLADLYRRFETCLESDKSMLFIEQYAYL--CGLGDAKLLRRCLRSARQ 134 (929)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 134 (929)
.|=|+-+.|-..|+.|.. ++|...--+.-++ -=+||+-.||++++.|++
T Consensus 9 ~pD~fY~~Li~aH~gLs~----e~S~~lnArLiLlLANhIGD~~vL~eAi~~Ar~ 59 (60)
T PF10932_consen 9 DPDDFYEALIEAHRGLSD----EQSAALNARLILLLANHIGDRAVLREAIAAARR 59 (60)
T ss_pred ChhHHHHHHHHHHhCCCH----HHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHhc
Confidence 478999999999998864 4454443333332 458999999999999985
No 496
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=28.05 E-value=2.7e+02 Score=22.87 Aligned_cols=31 Identities=13% Similarity=0.175 Sum_probs=24.1
Q ss_pred HHHHHHHhhHHHHhcccHHHHHHHHHHHHhc
Q 002379 418 RMLALHQLGCVMFEREEYKDACYYFEAAADA 448 (929)
Q Consensus 418 ~a~~~~~lG~~~~~~g~y~~A~~~f~~al~~ 448 (929)
.+..+...|.-.=..|+|++|+.+|..+++.
T Consensus 5 ~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~ 35 (75)
T cd02678 5 KAIELVKKAIEEDNAGNYEEALRLYQHALEY 35 (75)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3455666777777889999999999988875
No 497
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=27.80 E-value=1.2e+02 Score=24.34 Aligned_cols=26 Identities=23% Similarity=0.271 Sum_probs=16.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHc
Q 002379 751 LNNLGSIYVECGKLDQAENCYINALD 776 (929)
Q Consensus 751 ~~~lg~~~~~~g~~~eA~~~~~~al~ 776 (929)
+...|.-.-..|++++|+.+|.+++.
T Consensus 8 ~~~~Av~~D~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 8 LIKKAVEADEAGNYEEALELYKEAIE 33 (69)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44555556667777777777766554
No 498
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=27.48 E-value=7.2e+02 Score=25.90 Aligned_cols=42 Identities=19% Similarity=0.106 Sum_probs=26.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh-cc-ch--HHHHHHHHHHH
Q 002379 677 LVYEGWILYDTGHREEALSRAEKSISI-ER-TF--EAFFLKAYILA 718 (929)
Q Consensus 677 ~~~lg~~~~~~g~~~eA~~~~~~al~~-~p-~~--~~~~~l~~~l~ 718 (929)
+..++.+..+.++|++.+.+.+++++. +| .. +-...+..++.
T Consensus 4 ~v~~Aklaeq~eRyddm~~~mk~~~~~~~~~eLt~EERnLLSvayK 49 (244)
T smart00101 4 NVYMAKLAEQAERYEEMVEFMEKVAKTVDSEELTVEERNLLSVAYK 49 (244)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHh
Confidence 345677777788888888888887775 43 22 44444444443
No 499
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=26.85 E-value=1.2e+02 Score=25.16 Aligned_cols=32 Identities=22% Similarity=0.324 Sum_probs=24.4
Q ss_pred HHHHHHHHhhHHHHhcccHHHHHHHHHHHHhc
Q 002379 417 QRMLALHQLGCVMFEREEYKDACYYFEAAADA 448 (929)
Q Consensus 417 ~~a~~~~~lG~~~~~~g~y~~A~~~f~~al~~ 448 (929)
.++..+...|...-..|+|++|..+|..+++.
T Consensus 4 ~~A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~ 35 (75)
T cd02677 4 EQAAELIRLALEKEEEGDYEAAFEFYRAGVDL 35 (75)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 34455666666777779999999999998875
No 500
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=26.76 E-value=2.3e+02 Score=25.23 Aligned_cols=49 Identities=18% Similarity=0.097 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHH-HHHHHHcCC
Q 002379 844 TYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLHLR-AAFYESIGD 892 (929)
Q Consensus 844 ~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~l-a~~~~~~g~ 892 (929)
.......|.+-...|++..|.+.+.++-+..+.....++. +.+-..+||
T Consensus 59 a~~al~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~gd 108 (108)
T PF07219_consen 59 AQRALSRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQGD 108 (108)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC
Done!