Query 002379
Match_columns 929
No_of_seqs 1240 out of 4325
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 23:59:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002379.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002379hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w3b_A UDP-N-acetylglucosamine 100.0 5.6E-36 1.9E-40 338.3 46.4 372 489-924 5-386 (388)
2 1w3b_A UDP-N-acetylglucosamine 100.0 2.2E-35 7.5E-40 333.4 45.5 375 424-892 4-388 (388)
3 2xpi_A Anaphase-promoting comp 100.0 4.9E-34 1.7E-38 341.4 44.2 444 418-922 83-595 (597)
4 2xpi_A Anaphase-promoting comp 100.0 3.2E-32 1.1E-36 325.7 42.6 424 397-888 99-595 (597)
5 2gw1_A Mitochondrial precursor 100.0 1.2E-31 3.9E-36 314.0 38.8 412 417-922 4-494 (514)
6 3fp2_A TPR repeat-containing p 100.0 2.8E-31 9.7E-36 312.8 39.7 413 416-918 22-503 (537)
7 2y4t_A DNAJ homolog subfamily 100.0 2.2E-29 7.5E-34 289.7 38.1 348 499-910 10-414 (450)
8 3ieg_A DNAJ homolog subfamily 100.0 2.1E-28 7.3E-33 271.3 42.7 316 549-928 4-357 (359)
9 4g1t_A Interferon-induced prot 100.0 1E-29 3.5E-34 294.7 32.6 393 417-918 49-471 (472)
10 2y4t_A DNAJ homolog subfamily 100.0 5.3E-28 1.8E-32 278.1 40.5 331 531-925 8-377 (450)
11 2gw1_A Mitochondrial precursor 100.0 1.7E-28 5.8E-33 287.0 35.8 396 484-926 7-464 (514)
12 3ieg_A DNAJ homolog subfamily 100.0 2.9E-27 1E-31 262.1 39.8 321 484-890 4-353 (359)
13 3fp2_A TPR repeat-containing p 100.0 1.1E-27 3.7E-32 282.2 36.0 392 484-926 26-477 (537)
14 4g1t_A Interferon-induced prot 100.0 2.3E-26 7.9E-31 266.4 30.5 389 383-881 53-467 (472)
15 3hym_B Cell division cycle pro 99.9 3.9E-25 1.3E-29 242.2 34.4 295 505-893 12-321 (330)
16 3hym_B Cell division cycle pro 99.9 3.6E-25 1.2E-29 242.5 33.7 291 547-922 21-315 (330)
17 3htm_A Speckle-type POZ protei 99.9 3.8E-27 1.3E-31 233.3 14.5 143 213-359 30-172 (172)
18 3hve_A Gigaxonin; ubiquitin, c 99.9 4.3E-27 1.5E-31 248.4 12.7 154 206-363 19-175 (256)
19 1fch_A Peroxisomal targeting s 99.9 1.3E-25 4.6E-30 250.5 24.4 325 527-906 13-359 (368)
20 3hqi_A Speckle-type POZ protei 99.9 1E-26 3.4E-31 253.4 14.3 143 213-359 170-312 (312)
21 2xm6_A Protein corresponding t 99.9 1.1E-22 3.7E-27 237.1 48.8 375 501-921 27-450 (490)
22 2xm6_A Protein corresponding t 99.9 7.2E-23 2.5E-27 238.6 44.8 389 419-914 39-475 (490)
23 3i3n_A Kelch-like protein 11; 99.9 1.2E-26 4.2E-31 248.2 9.3 153 207-363 21-183 (279)
24 1fch_A Peroxisomal targeting s 99.9 1E-24 3.6E-29 243.3 23.3 287 524-873 34-359 (368)
25 2h6f_A Protein farnesyltransfe 99.9 2.5E-24 8.6E-29 240.4 22.6 253 631-924 88-366 (382)
26 4eqf_A PEX5-related protein; a 99.9 1.7E-23 5.9E-28 233.6 25.2 287 569-906 48-356 (365)
27 2ooe_A Cleavage stimulation fa 99.9 4.3E-21 1.5E-25 225.9 44.9 394 504-923 2-475 (530)
28 4eqf_A PEX5-related protein; a 99.9 2.1E-23 7.2E-28 232.9 23.5 247 639-925 64-341 (365)
29 2ooe_A Cleavage stimulation fa 99.9 1.3E-21 4.6E-26 230.3 38.5 404 420-910 14-496 (530)
30 2h6f_A Protein farnesyltransfe 99.9 4.4E-23 1.5E-27 230.3 22.8 251 506-821 88-360 (382)
31 3cv0_A Peroxisome targeting si 99.9 2.7E-22 9.3E-27 219.2 26.8 266 483-812 21-318 (327)
32 4eoz_A Speckle-type POZ protei 99.9 1.1E-24 3.7E-29 209.0 6.6 125 213-341 21-145 (145)
33 3cv0_A Peroxisome targeting si 99.9 1.7E-22 5.7E-27 220.9 23.9 276 589-910 22-319 (327)
34 3u4t_A TPR repeat-containing p 99.9 1.5E-22 5.1E-27 215.5 21.5 250 639-925 2-269 (272)
35 3uq3_A Heat shock protein STI1 99.9 1.3E-21 4.3E-26 206.0 24.6 241 639-920 4-256 (258)
36 3e4b_A ALGK; tetratricopeptide 99.9 4.2E-21 1.4E-25 220.8 28.7 381 423-907 7-422 (452)
37 2pl2_A Hypothetical conserved 99.9 3.2E-21 1.1E-25 198.6 22.6 196 637-903 2-211 (217)
38 3u4t_A TPR repeat-containing p 99.9 5.8E-21 2E-25 203.2 25.1 246 515-821 3-262 (272)
39 2pl2_A Hypothetical conserved 99.9 4.1E-21 1.4E-25 197.7 22.9 198 512-774 2-211 (217)
40 3mkr_A Coatomer subunit epsilo 99.9 2.5E-20 8.4E-25 201.0 27.2 245 630-920 23-278 (291)
41 2vkp_A BTB/POZ domain-containi 99.9 5.5E-22 1.9E-26 179.7 11.6 100 215-318 6-109 (109)
42 3e4b_A ALGK; tetratricopeptide 99.9 1.2E-19 4.1E-24 208.6 33.3 354 490-924 10-403 (452)
43 3uq3_A Heat shock protein STI1 99.9 3.1E-20 1.1E-24 195.3 25.9 241 513-819 3-252 (258)
44 2if5_A Zinc finger and BTB dom 99.9 9.5E-22 3.2E-26 181.4 11.2 99 213-314 21-119 (120)
45 3mkr_A Coatomer subunit epsilo 99.9 4.2E-20 1.4E-24 199.2 25.3 269 523-900 7-288 (291)
46 3sf4_A G-protein-signaling mod 99.9 2.4E-20 8.2E-25 210.4 24.4 305 514-895 8-365 (406)
47 3sf4_A G-protein-signaling mod 99.9 3.6E-20 1.2E-24 209.0 24.2 289 548-925 9-361 (406)
48 4a1s_A PINS, partner of inscut 99.8 3.6E-20 1.2E-24 210.0 23.0 274 550-912 50-378 (411)
49 1ouv_A Conserved hypothetical 99.8 4.7E-19 1.6E-23 189.0 29.4 229 636-913 2-258 (273)
50 2z8h_A Transcription regulator 99.8 1.5E-21 5.3E-26 184.5 8.0 104 214-323 33-137 (138)
51 1xi4_A Clathrin heavy chain; a 99.8 1.7E-17 5.7E-22 201.7 44.9 286 554-908 1055-1347(1630)
52 3ro2_A PINS homolog, G-protein 99.8 6.4E-20 2.2E-24 200.4 22.1 273 550-911 7-337 (338)
53 2ppi_A Gigaxonin; BTB domain, 99.8 1.8E-21 6.3E-26 184.9 8.2 105 208-315 37-144 (144)
54 1r29_A B-cell lymphoma 6 prote 99.8 6.4E-21 2.2E-25 177.7 11.1 106 208-316 19-125 (127)
55 4a1s_A PINS, partner of inscut 99.8 1.4E-19 4.7E-24 205.2 24.2 290 513-879 46-378 (411)
56 1xi4_A Clathrin heavy chain; a 99.8 2.2E-16 7.7E-21 191.9 52.1 403 425-905 991-1427(1630)
57 3b84_A Zinc finger and BTB dom 99.8 2.9E-21 1E-25 177.4 7.4 96 214-316 21-116 (119)
58 1xnf_A Lipoprotein NLPI; TPR, 99.8 2.9E-19 9.9E-24 190.1 22.9 219 639-900 42-269 (275)
59 1buo_A POZ domain, protein (pr 99.8 1.6E-20 5.4E-25 173.2 11.1 98 213-318 24-121 (121)
60 2vpk_A Myoneurin; transcriptio 99.8 1.5E-20 5.2E-25 172.1 9.4 98 214-316 19-116 (116)
61 2yy9_A Zinc finger and BTB dom 99.8 6.4E-21 2.2E-25 179.2 6.7 105 208-319 15-120 (135)
62 1ouv_A Conserved hypothetical 99.8 5.1E-18 1.7E-22 180.9 29.4 235 511-818 2-260 (273)
63 3ro2_A PINS homolog, G-protein 99.8 1.2E-18 4.2E-23 190.2 25.0 275 486-812 8-335 (338)
64 2ho1_A Type 4 fimbrial biogene 99.8 2.6E-18 9E-23 180.4 26.2 214 634-917 30-249 (252)
65 2q7f_A YRRB protein; TPR, prot 99.8 4.7E-19 1.6E-23 184.7 19.9 215 639-923 22-239 (243)
66 2vq2_A PILW, putative fimbrial 99.8 5.6E-18 1.9E-22 173.8 27.4 213 635-917 3-222 (225)
67 1xnf_A Lipoprotein NLPI; TPR, 99.8 2.2E-18 7.7E-23 183.1 24.4 223 651-914 16-252 (275)
68 2q7f_A YRRB protein; TPR, prot 99.8 8.3E-19 2.8E-23 182.8 20.3 191 621-881 38-230 (243)
69 3vtx_A MAMA; tetratricopeptide 99.8 1.9E-18 6.5E-23 172.3 22.0 171 513-707 3-174 (184)
70 3vtx_A MAMA; tetratricopeptide 99.8 1.6E-18 5.6E-23 172.8 20.9 165 748-912 5-176 (184)
71 2ond_A Cleavage stimulation fa 99.8 2.2E-18 7.5E-23 187.6 23.4 242 626-918 36-304 (308)
72 2q81_A MIZ-1 protein; BTB/POZ 99.8 3.8E-20 1.3E-24 170.0 6.6 94 214-315 24-117 (119)
73 2ihc_A Transcription regulator 99.8 6.8E-21 2.3E-25 176.4 1.5 98 214-315 26-123 (124)
74 3ohu_A Transcription regulator 99.8 8.1E-21 2.8E-25 176.4 1.4 97 213-314 28-125 (125)
75 4abn_A Tetratricopeptide repea 99.8 1.8E-18 6.1E-23 200.1 19.9 209 655-903 83-318 (474)
76 4abn_A Tetratricopeptide repea 99.8 9.6E-18 3.3E-22 193.9 25.5 212 497-744 84-318 (474)
77 3ga1_A Nucleus accumbens-assoc 99.8 3.3E-20 1.1E-24 173.2 3.7 102 210-318 25-128 (129)
78 4i17_A Hypothetical protein; T 99.8 2.4E-17 8E-22 170.6 25.3 211 637-923 4-226 (228)
79 2ond_A Cleavage stimulation fa 99.8 1.2E-17 4.3E-22 181.6 24.3 216 657-912 33-276 (308)
80 2ho1_A Type 4 fimbrial biogene 99.8 5.4E-17 1.8E-21 170.3 26.8 204 551-818 40-247 (252)
81 3ulq_A Response regulator aspa 99.8 3.2E-17 1.1E-21 184.2 25.7 233 642-909 105-371 (383)
82 3m5b_A Zinc finger and BTB dom 99.8 3.8E-19 1.3E-23 162.5 7.1 90 215-316 28-117 (119)
83 3ulq_A Response regulator aspa 99.8 2.6E-16 8.8E-21 176.8 30.9 242 517-812 105-371 (383)
84 2vq2_A PILW, putative fimbrial 99.8 1.4E-16 4.8E-21 163.3 25.4 210 511-818 4-220 (225)
85 4gyw_A UDP-N-acetylglucosamine 99.7 1.9E-17 6.6E-22 199.0 19.1 174 510-707 4-178 (723)
86 4gyw_A UDP-N-acetylglucosamine 99.7 1.8E-17 6.1E-22 199.3 18.8 172 635-876 4-177 (723)
87 4i17_A Hypothetical protein; T 99.7 9.8E-17 3.3E-21 165.9 21.3 181 512-716 4-223 (228)
88 3fkc_A Transcriptional regulat 99.7 4.3E-18 1.5E-22 155.2 9.4 88 214-308 28-115 (116)
89 3q15_A PSP28, response regulat 99.7 5.7E-16 1.9E-20 173.7 26.4 232 642-907 103-366 (378)
90 3nf1_A KLC 1, kinesin light ch 99.7 2.7E-17 9.2E-22 177.9 14.9 234 636-909 23-310 (311)
91 3qky_A Outer membrane assembly 99.7 2.2E-16 7.5E-21 167.1 20.2 208 634-923 9-241 (261)
92 3nf1_A KLC 1, kinesin light ch 99.7 5.3E-17 1.8E-21 175.6 14.4 256 511-812 23-310 (311)
93 1qqe_A Vesicular transport pro 99.7 4.5E-16 1.6E-20 167.8 20.2 218 655-920 32-283 (292)
94 3qky_A Outer membrane assembly 99.7 9.9E-16 3.4E-20 162.0 21.6 179 508-707 8-228 (261)
95 3dra_A Protein farnesyltransfe 99.7 2.2E-15 7.6E-20 161.5 24.4 233 651-920 43-302 (306)
96 1hz4_A MALT regulatory protein 99.7 5.6E-15 1.9E-19 165.0 28.7 310 516-909 15-352 (373)
97 2pzi_A Probable serine/threoni 99.7 5.6E-16 1.9E-20 187.2 21.7 182 634-859 388-583 (681)
98 3urz_A Uncharacterized protein 99.7 6.2E-16 2.1E-20 157.7 17.9 177 748-925 4-204 (208)
99 3q15_A PSP28, response regulat 99.7 5.8E-15 2E-19 165.4 27.4 239 517-810 103-366 (378)
100 2pzi_A Probable serine/threoni 99.7 6.3E-16 2.1E-20 186.8 19.7 182 509-718 388-579 (681)
101 1b89_A Protein (clathrin heavy 99.7 7.5E-17 2.6E-21 177.9 9.7 279 499-868 21-306 (449)
102 1hz4_A MALT regulatory protein 99.7 1.4E-14 4.8E-19 161.8 28.0 270 589-908 15-324 (373)
103 3dra_A Protein farnesyltransfe 99.7 9.2E-15 3.2E-19 156.6 25.3 181 499-703 51-250 (306)
104 1qqe_A Vesicular transport pro 99.6 2.9E-15 9.9E-20 161.5 17.9 209 522-816 44-276 (292)
105 2yhc_A BAMD, UPF0169 lipoprote 99.6 7.9E-15 2.7E-19 151.4 20.4 209 639-912 3-219 (225)
106 3as5_A MAMA; tetratricopeptide 99.6 1E-14 3.6E-19 144.1 19.9 169 515-707 8-177 (186)
107 3urz_A Uncharacterized protein 99.6 5.3E-15 1.8E-19 150.8 17.9 170 514-708 3-191 (208)
108 3as5_A MAMA; tetratricopeptide 99.6 1.2E-14 4.2E-19 143.6 19.5 166 748-913 8-180 (186)
109 4ga2_A E3 SUMO-protein ligase 99.6 5E-16 1.7E-20 149.4 8.6 143 753-925 2-148 (150)
110 3edt_B KLC 2, kinesin light ch 99.6 6.7E-15 2.3E-19 156.3 18.2 217 637-906 40-281 (283)
111 1b89_A Protein (clathrin heavy 99.6 7.5E-16 2.6E-20 170.0 9.8 291 524-906 12-311 (449)
112 4e6h_A MRNA 3'-END-processing 99.6 3.7E-12 1.3E-16 151.3 39.6 391 498-920 83-584 (679)
113 4ga2_A E3 SUMO-protein ligase 99.6 4E-15 1.4E-19 143.0 11.3 144 554-721 3-148 (150)
114 3edt_B KLC 2, kinesin light ch 99.6 2.1E-14 7.1E-19 152.5 17.8 219 653-926 14-267 (283)
115 2yhc_A BAMD, UPF0169 lipoprote 99.6 8.5E-14 2.9E-18 143.6 21.0 173 514-707 3-217 (225)
116 3dss_A Geranylgeranyl transfer 99.6 4E-13 1.4E-17 144.6 25.8 227 651-918 40-316 (331)
117 4e6h_A MRNA 3'-END-processing 99.6 1.7E-11 5.7E-16 145.7 41.1 400 499-925 50-555 (679)
118 2r5s_A Uncharacterized protein 99.6 4.4E-14 1.5E-18 139.6 15.3 167 511-702 2-172 (176)
119 3dss_A Geranylgeranyl transfer 99.6 2.6E-12 9E-17 138.2 30.2 242 430-713 40-315 (331)
120 4gco_A Protein STI-1; structur 99.5 3E-14 1E-18 132.4 12.5 113 808-920 7-124 (126)
121 3q7a_A Farnesyltransferase alp 99.5 3.7E-13 1.3E-17 145.4 22.3 241 640-920 54-346 (349)
122 2ast_A S-phase kinase-associat 99.5 1.5E-14 5.1E-19 139.0 9.9 115 220-338 3-148 (159)
123 3qou_A Protein YBBN; thioredox 99.5 3E-13 1E-17 145.2 19.4 168 511-702 113-283 (287)
124 4gco_A Protein STI-1; structur 99.5 1E-13 3.4E-18 128.8 13.2 119 631-789 4-124 (126)
125 2r5s_A Uncharacterized protein 99.5 9.6E-14 3.3E-18 137.2 13.4 156 749-905 7-172 (176)
126 2ifu_A Gamma-SNAP; membrane fu 99.5 2.5E-13 8.6E-18 147.4 17.2 126 750-877 78-227 (307)
127 3gyz_A Chaperone protein IPGC; 99.5 1.4E-13 4.8E-18 131.9 12.3 115 630-784 26-140 (151)
128 3rjv_A Putative SEL1 repeat pr 99.5 1E-12 3.5E-17 134.1 18.9 171 747-922 17-211 (212)
129 3q7a_A Farnesyltransferase alp 99.5 2.7E-12 9.3E-17 138.7 22.6 173 499-721 72-256 (349)
130 3gyz_A Chaperone protein IPGC; 99.5 5.9E-14 2E-18 134.5 8.6 107 805-911 27-138 (151)
131 2ifu_A Gamma-SNAP; membrane fu 99.5 1.8E-12 6.2E-17 140.5 20.8 226 498-801 8-253 (307)
132 3qou_A Protein YBBN; thioredox 99.4 1.6E-12 5.4E-17 139.6 18.6 71 636-706 113-183 (287)
133 2vsy_A XCC0866; transferase, g 99.4 1.1E-12 3.9E-17 155.2 18.7 156 626-821 9-169 (568)
134 2c2l_A CHIP, carboxy terminus 99.4 5.5E-13 1.9E-17 142.6 14.3 197 637-907 1-200 (281)
135 2vsy_A XCC0866; transferase, g 99.4 9.7E-13 3.3E-17 155.9 17.4 159 497-679 5-167 (568)
136 2vgx_A Chaperone SYCD; alterna 99.4 3E-13 1E-17 129.4 9.9 122 803-924 10-136 (148)
137 4f3v_A ESX-1 secretion system 99.4 3.9E-13 1.3E-17 140.6 11.4 225 643-918 10-248 (282)
138 3rjv_A Putative SEL1 repeat pr 99.4 3E-12 1E-16 130.6 17.6 174 625-876 5-200 (212)
139 4f3v_A ESX-1 secretion system 99.4 3.2E-12 1.1E-16 133.6 16.8 198 560-821 18-248 (282)
140 2c2l_A CHIP, carboxy terminus 99.4 6E-13 2E-17 142.3 11.5 87 621-707 19-105 (281)
141 1dce_A Protein (RAB geranylger 99.4 4.3E-13 1.5E-17 157.3 11.2 184 499-706 47-270 (567)
142 2xcb_A PCRH, regulatory protei 99.4 1E-12 3.5E-17 124.7 8.9 102 823-924 31-133 (142)
143 2fo7_A Synthetic consensus TPR 99.4 2.3E-11 7.7E-16 112.6 17.7 129 782-910 3-136 (136)
144 1p5q_A FKBP52, FK506-binding p 99.4 1E-13 3.6E-18 152.4 1.5 185 499-703 83-294 (336)
145 2vgx_A Chaperone SYCD; alterna 99.3 4.5E-12 1.5E-16 121.2 12.2 109 629-777 10-118 (148)
146 1hh8_A P67PHOX, NCF-2, neutrop 99.3 2.5E-11 8.6E-16 123.3 18.3 128 749-877 7-154 (213)
147 2xcb_A PCRH, regulatory protei 99.3 6.3E-12 2.2E-16 119.1 11.7 110 628-777 6-115 (142)
148 2fo7_A Synthetic consensus TPR 99.3 3.6E-11 1.2E-15 111.3 16.5 132 551-706 4-135 (136)
149 4gcn_A Protein STI-1; structur 99.3 2.2E-11 7.7E-16 112.9 14.7 112 639-784 7-120 (127)
150 1p5q_A FKBP52, FK506-binding p 99.3 5E-12 1.7E-16 138.8 11.4 143 628-810 135-295 (336)
151 2qfc_A PLCR protein; TPR, HTH, 99.3 9.2E-11 3.1E-15 126.0 21.0 177 671-907 72-267 (293)
152 2e2e_A Formate-dependent nitri 99.3 1.3E-11 4.4E-16 121.6 12.5 132 793-924 23-162 (177)
153 3upv_A Heat shock protein STI1 99.3 1.9E-11 6.5E-16 112.9 12.9 100 824-923 18-124 (126)
154 2hr2_A Hypothetical protein; a 99.3 1.8E-12 6.2E-17 122.8 5.3 128 781-926 12-151 (159)
155 4ajy_C Transcription elongatio 99.3 8.8E-12 3E-16 108.6 9.1 81 220-303 4-97 (97)
156 1hh8_A P67PHOX, NCF-2, neutrop 99.3 1.3E-10 4.4E-15 117.9 18.6 132 516-673 7-154 (213)
157 4gcn_A Protein STI-1; structur 99.3 2.6E-11 9E-16 112.4 11.5 109 781-920 9-125 (127)
158 2qfc_A PLCR protein; TPR, HTH, 99.2 9.8E-11 3.3E-15 125.8 17.4 177 512-706 72-269 (293)
159 1dce_A Protein (RAB geranylger 99.2 1.4E-10 4.9E-15 135.8 19.3 167 759-925 39-240 (567)
160 1a17_A Serine/threonine protei 99.2 2.1E-10 7.1E-15 110.9 16.3 125 782-906 15-146 (166)
161 3gw4_A Uncharacterized protein 99.2 3.5E-10 1.2E-14 113.5 18.4 169 651-877 3-180 (203)
162 3rkv_A Putative peptidylprolyl 99.2 1.1E-10 3.8E-15 113.1 14.2 127 781-927 12-148 (162)
163 3u3w_A Transcriptional activat 99.2 1.6E-10 5.5E-15 124.1 16.8 170 518-705 78-268 (293)
164 3mv2_B Coatomer subunit epsilo 99.2 7.4E-10 2.5E-14 117.3 21.1 247 420-707 15-286 (310)
165 2hr2_A Hypothetical protein; a 99.2 6.4E-11 2.2E-15 112.1 11.3 114 548-707 11-135 (159)
166 1a17_A Serine/threonine protei 99.2 2.1E-10 7.1E-15 110.9 15.5 133 549-705 14-148 (166)
167 3mv2_B Coatomer subunit epsilo 99.2 1.4E-09 4.7E-14 115.2 22.7 144 523-706 21-168 (310)
168 2fbn_A 70 kDa peptidylprolyl i 99.2 4.2E-11 1.4E-15 120.5 10.5 160 752-925 8-170 (198)
169 2lni_A Stress-induced-phosphop 99.2 1.7E-10 5.9E-15 106.8 13.8 120 636-795 12-133 (133)
170 3sz7_A HSC70 cochaperone (SGT) 99.2 9.3E-11 3.2E-15 113.9 12.3 105 780-914 11-116 (164)
171 3sz7_A HSC70 cochaperone (SGT) 99.2 1.6E-10 5.5E-15 112.3 13.9 113 636-788 7-121 (164)
172 3u3w_A Transcriptional activat 99.2 4.4E-10 1.5E-14 120.7 18.6 173 553-777 80-266 (293)
173 2e2e_A Formate-dependent nitri 99.2 9.7E-11 3.3E-15 115.3 11.9 124 560-707 22-148 (177)
174 3upv_A Heat shock protein STI1 99.2 2.8E-10 9.6E-15 104.9 14.3 110 589-716 5-121 (126)
175 2vyi_A SGTA protein; chaperone 99.2 2E-10 6.9E-15 105.7 12.8 122 635-796 7-130 (131)
176 3q49_B STIP1 homology and U bo 99.2 2.6E-10 8.7E-15 106.7 13.0 103 823-925 22-130 (137)
177 3q49_B STIP1 homology and U bo 99.1 5.8E-10 2E-14 104.2 14.4 103 635-777 4-106 (137)
178 2fbn_A 70 kDa peptidylprolyl i 99.1 5.6E-11 1.9E-15 119.5 7.9 155 521-693 10-175 (198)
179 1fs1_B SKP1, cyclin A/CDK2-ass 99.1 1.7E-10 5.7E-15 107.9 10.3 96 220-324 4-126 (141)
180 1hxi_A PEX5, peroxisome target 99.1 2.2E-10 7.7E-15 105.1 10.9 90 823-912 30-120 (121)
181 1elw_A TPR1-domain of HOP; HOP 99.1 8.7E-10 3E-14 99.3 14.6 113 780-922 4-117 (118)
182 1kt0_A FKBP51, 51 kDa FK506-bi 99.1 1.1E-10 3.8E-15 133.8 10.5 133 630-802 258-407 (457)
183 1na0_A Designed protein CTPR3; 99.1 1.7E-09 5.7E-14 98.5 16.1 119 636-794 4-125 (125)
184 3gw4_A Uncharacterized protein 99.1 1.2E-09 4.3E-14 109.4 16.2 145 635-812 20-179 (203)
185 2lni_A Stress-induced-phosphop 99.1 8.3E-10 2.8E-14 102.1 13.5 50 639-688 83-132 (133)
186 2xev_A YBGF; tetratricopeptide 99.1 8.9E-10 3E-14 101.7 13.6 119 782-927 4-126 (129)
187 1hxi_A PEX5, peroxisome target 99.1 4.2E-10 1.4E-14 103.2 11.1 96 783-878 20-119 (121)
188 2dba_A Smooth muscle cell asso 99.1 1.1E-09 3.9E-14 103.4 14.5 100 824-923 42-145 (148)
189 2vyi_A SGTA protein; chaperone 99.1 1.2E-09 4.2E-14 100.3 14.2 116 551-690 15-130 (131)
190 4b4t_Q 26S proteasome regulato 99.1 1.8E-09 6.3E-14 122.5 18.7 211 515-777 4-245 (434)
191 1zu2_A Mitochondrial import re 99.1 2E-10 6.8E-15 108.5 8.6 100 823-922 15-136 (158)
192 3rkv_A Putative peptidylprolyl 99.1 1.5E-09 5.1E-14 105.1 15.2 120 548-707 11-130 (162)
193 1kt0_A FKBP51, 51 kDa FK506-bi 99.1 8.9E-11 3E-15 134.6 6.6 155 499-695 252-406 (457)
194 1elw_A TPR1-domain of HOP; HOP 99.1 2.9E-09 9.9E-14 95.8 15.4 112 639-790 3-116 (118)
195 2uy1_A Cleavage stimulation fa 99.1 3.5E-07 1.2E-11 105.4 36.7 55 656-711 195-250 (493)
196 3k9i_A BH0479 protein; putativ 99.1 1.9E-10 6.6E-15 104.7 7.4 102 822-923 2-107 (117)
197 2p1m_A SKP1-like protein 1A; F 99.1 4.9E-11 1.7E-15 114.2 3.1 112 220-338 6-147 (160)
198 4b4t_Q 26S proteasome regulato 99.0 9E-09 3.1E-13 116.8 21.9 199 640-838 4-244 (434)
199 3ro3_A PINS homolog, G-protein 99.0 3.8E-09 1.3E-13 101.0 15.1 139 640-812 9-161 (164)
200 2kck_A TPR repeat; tetratricop 99.0 1.4E-09 4.8E-14 97.0 11.1 103 636-778 2-107 (112)
201 1wao_1 Serine/threonine protei 99.0 1.3E-10 4.4E-15 133.9 4.9 129 783-911 9-155 (477)
202 2dba_A Smooth muscle cell asso 99.0 4.1E-09 1.4E-13 99.4 14.7 116 634-789 22-142 (148)
203 1elr_A TPR2A-domain of HOP; HO 99.0 2.1E-09 7.3E-14 98.8 11.8 117 781-928 5-129 (131)
204 1na0_A Designed protein CTPR3; 99.0 7E-09 2.4E-13 94.3 15.1 48 639-686 76-123 (125)
205 2if4_A ATFKBP42; FKBP-like, al 99.0 3.9E-10 1.3E-14 123.8 7.1 71 637-707 176-263 (338)
206 1ihg_A Cyclophilin 40; ppiase 99.0 1.9E-09 6.5E-14 119.7 12.3 131 782-926 225-356 (370)
207 2if4_A ATFKBP42; FKBP-like, al 99.0 6.1E-10 2.1E-14 122.2 7.9 150 748-912 179-334 (338)
208 1elr_A TPR2A-domain of HOP; HO 99.0 4.7E-09 1.6E-13 96.4 12.5 121 639-793 3-125 (131)
209 1wao_1 Serine/threonine protei 98.9 2.3E-10 7.7E-15 131.8 3.4 132 552-707 10-154 (477)
210 2kck_A TPR repeat; tetratricop 98.9 4E-09 1.4E-13 94.0 10.9 106 578-707 2-110 (112)
211 1zu2_A Mitochondrial import re 98.9 2.1E-09 7.2E-14 101.5 9.1 82 626-707 22-124 (158)
212 2xev_A YBGF; tetratricopeptide 98.9 1.1E-08 3.6E-13 94.3 13.6 106 749-881 3-113 (129)
213 3k9i_A BH0479 protein; putativ 98.9 3E-09 1E-13 96.7 8.9 82 626-707 10-94 (117)
214 1ihg_A Cyclophilin 40; ppiase 98.9 9E-09 3.1E-13 114.2 14.5 122 640-801 223-362 (370)
215 2uy1_A Cleavage stimulation fa 98.9 1E-06 3.6E-11 101.3 31.2 351 499-905 13-412 (493)
216 3ro3_A PINS homolog, G-protein 98.9 1.1E-08 3.9E-13 97.5 11.5 140 515-706 9-161 (164)
217 2kat_A Uncharacterized protein 98.8 4.5E-08 1.5E-12 88.4 11.8 82 626-707 5-86 (115)
218 2kat_A Uncharacterized protein 98.7 6.1E-08 2.1E-12 87.5 11.9 84 828-911 3-87 (115)
219 3ma5_A Tetratricopeptide repea 98.7 7.9E-08 2.7E-12 84.5 10.9 73 635-707 2-74 (100)
220 1na3_A Designed protein CTPR2; 98.6 1.3E-07 4.4E-12 80.8 10.5 83 638-720 7-90 (91)
221 3ma5_A Tetratricopeptide repea 98.6 7.3E-08 2.5E-12 84.7 7.6 75 839-913 2-77 (100)
222 3n71_A Histone lysine methyltr 98.6 4.8E-07 1.6E-11 103.4 16.3 139 645-815 314-470 (490)
223 1na3_A Designed protein CTPR2; 98.6 2.6E-07 8.8E-12 78.9 10.1 82 842-923 7-89 (91)
224 1hv2_A Elongin C, ELC1; protei 98.6 1.8E-07 6.2E-12 81.2 8.7 80 220-303 6-99 (99)
225 2l6j_A TPR repeat-containing p 98.6 4E-07 1.4E-11 80.9 11.2 80 844-923 4-90 (111)
226 2l6j_A TPR repeat-containing p 98.5 1.2E-07 4.2E-12 84.3 7.0 83 639-721 3-92 (111)
227 1pc2_A Mitochondria fission pr 98.5 6E-07 2E-11 83.7 11.6 101 826-926 14-120 (152)
228 1klx_A Cysteine rich protein B 98.5 9.2E-07 3.1E-11 82.8 12.9 119 762-917 9-135 (138)
229 1klx_A Cysteine rich protein B 98.5 1.5E-06 5.1E-11 81.3 14.3 110 654-809 9-126 (138)
230 3drz_A BTB/POZ domain-containi 98.5 9E-07 3.1E-11 78.2 10.9 93 220-316 8-106 (107)
231 2fnj_C Transcription elongatio 98.5 1.8E-07 6.2E-12 80.7 6.3 81 220-303 3-96 (96)
232 3n71_A Histone lysine methyltr 98.4 1.8E-06 6.1E-11 98.7 15.4 139 751-912 312-470 (490)
233 3v7d_A Suppressor of kinetocho 98.4 1.1E-06 3.9E-11 84.3 11.6 106 220-329 9-146 (169)
234 3ly7_A Transcriptional activat 98.4 8.1E-06 2.8E-10 87.8 18.7 143 551-711 199-347 (372)
235 3u64_A Protein TP_0956; tetrat 98.4 1.5E-06 5.2E-11 89.5 12.4 86 825-910 178-273 (301)
236 3ly7_A Transcriptional activat 98.4 3.5E-06 1.2E-10 90.6 15.7 82 836-918 269-350 (372)
237 3u64_A Protein TP_0956; tetrat 98.4 7.1E-06 2.4E-10 84.6 16.0 82 626-707 183-273 (301)
238 2kc7_A BFR218_protein; tetratr 98.3 3.4E-07 1.2E-11 79.9 5.1 81 824-911 14-95 (99)
239 3bee_A Putative YFRE protein; 98.3 4.4E-06 1.5E-10 71.9 10.4 83 840-922 2-88 (93)
240 3bee_A Putative YFRE protein; 98.2 3.6E-06 1.2E-10 72.5 9.2 72 636-707 2-76 (93)
241 2kc7_A BFR218_protein; tetratr 98.2 5.4E-06 1.9E-10 72.0 10.5 67 644-710 4-72 (99)
242 2v5f_A Prolyl 4-hydroxylase su 98.2 1.2E-05 4.3E-10 70.8 11.8 84 843-926 4-95 (104)
243 3qww_A SET and MYND domain-con 98.1 1.1E-05 3.8E-10 90.5 13.2 100 823-922 311-432 (433)
244 1vcb_B Protein (elongin C); tu 98.0 6.6E-06 2.3E-10 72.8 6.7 81 220-303 19-112 (112)
245 1nzn_A CGI-135 protein, fissio 98.0 3.5E-05 1.2E-09 69.0 11.4 100 827-926 18-123 (126)
246 1pc2_A Mitochondria fission pr 98.0 3.3E-05 1.1E-09 72.0 10.6 85 627-711 19-109 (152)
247 3qwp_A SET and MYND domain-con 97.9 9.5E-05 3.3E-09 83.0 14.7 112 648-791 295-424 (429)
248 3qww_A SET and MYND domain-con 97.9 6.1E-05 2.1E-09 84.5 12.8 94 652-777 310-411 (433)
249 2eqx_A Kelch repeat and BTB do 97.9 4.4E-06 1.5E-10 73.6 2.7 48 315-363 5-52 (105)
250 2v5f_A Prolyl 4-hydroxylase su 97.9 9E-05 3.1E-09 65.2 11.1 76 639-714 4-87 (104)
251 3qwp_A SET and MYND domain-con 97.8 8.5E-05 2.9E-09 83.5 11.9 81 844-924 329-423 (429)
252 3drx_A BTB/POZ domain-containi 97.7 0.00012 4.2E-09 70.9 9.5 97 216-316 9-112 (202)
253 3o48_A Mitochondria fission 1 97.5 0.00078 2.7E-08 60.4 11.0 85 842-926 38-127 (134)
254 1y8m_A FIS1; mitochondria, unk 97.5 0.0015 5.1E-08 59.4 12.5 86 841-926 36-126 (144)
255 4g26_A Pentatricopeptide repea 97.4 0.0054 1.8E-07 70.3 20.2 162 749-910 27-210 (501)
256 4g26_A Pentatricopeptide repea 97.3 0.0045 1.5E-07 71.0 17.5 155 643-809 29-204 (501)
257 1nzn_A CGI-135 protein, fissio 97.3 0.0023 7.8E-08 57.3 11.2 94 499-598 19-118 (126)
258 3ffl_A Anaphase-promoting comp 96.7 0.01 3.4E-07 55.6 10.8 132 640-790 20-165 (167)
259 4h7y_A Dual specificity protei 96.6 0.026 8.9E-07 51.6 12.1 117 777-916 10-133 (161)
260 4h7y_A Dual specificity protei 96.4 0.018 6.2E-07 52.6 9.9 82 840-921 9-104 (161)
261 1s1g_A Potassium voltage-gated 96.3 0.0044 1.5E-07 55.6 5.3 89 220-315 15-110 (124)
262 3kvt_A Potassium channel prote 96.2 0.0018 6E-08 57.4 2.5 84 220-307 7-93 (115)
263 3ffl_A Anaphase-promoting comp 96.0 0.035 1.2E-06 51.9 10.0 135 516-684 21-165 (167)
264 2nz0_B Potassium voltage-gated 95.9 0.0066 2.3E-07 55.7 4.5 80 220-306 37-121 (140)
265 1nn7_A Potassium channel KV4.2 95.7 0.0035 1.2E-07 54.6 2.1 85 220-311 2-92 (105)
266 1y8m_A FIS1; mitochondria, unk 95.7 0.12 4.1E-06 46.9 12.1 82 511-598 35-121 (144)
267 3o48_A Mitochondria fission 1 95.4 0.096 3.3E-06 46.9 10.1 81 513-599 38-123 (134)
268 3txn_A 26S proteasome regulato 95.3 1.7 5.9E-05 47.2 21.8 185 676-860 21-236 (394)
269 1t1d_A Protein (potassium chan 95.2 0.011 3.8E-07 50.7 3.4 84 220-307 3-90 (100)
270 3mkq_A Coatomer beta'-subunit; 94.8 1.1 3.8E-05 54.2 21.2 100 649-775 608-708 (814)
271 3mkq_A Coatomer beta'-subunit; 94.3 4.1 0.00014 49.1 24.5 48 756-806 660-707 (814)
272 4gns_B Protein CSD3, chitin bi 94.0 0.18 6.1E-06 59.7 10.7 61 640-700 337-397 (754)
273 3txn_A 26S proteasome regulato 93.7 2.2 7.7E-05 46.3 18.0 100 644-777 103-210 (394)
274 1qsa_A Protein (soluble lytic 93.3 15 0.0005 42.6 30.4 53 636-688 98-150 (618)
275 3kae_A CDC27, possible protein 92.3 7 0.00024 36.3 18.0 94 591-707 36-147 (242)
276 4gns_B Protein CSD3, chitin bi 92.2 0.7 2.4E-05 54.7 12.2 58 846-903 339-397 (754)
277 3mkq_B Coatomer subunit alpha; 91.7 9.1 0.00031 36.2 16.9 48 650-702 15-62 (177)
278 1qsa_A Protein (soluble lytic 91.5 24 0.00083 40.8 38.0 136 758-903 295-439 (618)
279 3kae_A CDC27, possible protein 90.1 12 0.00041 34.8 20.6 94 484-582 34-148 (242)
280 2ff4_A Probable regulatory pro 89.1 3 0.0001 45.6 13.0 126 787-922 122-256 (388)
281 4b4t_P 26S proteasome regulato 87.8 25 0.00084 39.0 19.6 180 654-838 30-246 (445)
282 2ff4_A Probable regulatory pro 87.2 3.8 0.00013 44.7 12.3 61 642-702 173-233 (388)
283 1ya0_A SMG-7 transcript varian 86.8 2.7 9.3E-05 47.3 11.0 78 642-719 154-232 (497)
284 1zbp_A Hypothetical protein VP 86.6 9.4 0.00032 38.7 13.5 59 649-707 6-64 (273)
285 1zbp_A Hypothetical protein VP 86.4 2.2 7.4E-05 43.3 8.7 60 855-914 8-68 (273)
286 1ya0_A SMG-7 transcript varian 86.0 3.8 0.00013 46.1 11.5 49 825-873 167-215 (497)
287 3spa_A Mtrpol, DNA-directed RN 84.2 15 0.00052 44.6 15.9 97 749-874 128-231 (1134)
288 3mkq_B Coatomer subunit alpha; 83.6 30 0.001 32.6 18.0 126 759-903 16-141 (177)
289 4b4t_R RPN7, 26S proteasome re 81.5 10 0.00034 42.0 12.6 91 749-839 132-237 (429)
290 4fhn_B Nucleoporin NUP120; pro 80.5 38 0.0013 42.6 18.8 139 520-699 817-963 (1139)
291 3spa_A Mtrpol, DNA-directed RN 80.4 18 0.00063 43.9 14.7 95 674-809 127-230 (1134)
292 2vkp_A BTB/POZ domain-containi 79.4 1.4 4.9E-05 38.0 3.8 33 318-351 77-109 (109)
293 4fhn_B Nucleoporin NUP120; pro 78.6 28 0.00095 43.8 16.7 130 631-796 833-987 (1139)
294 4b4t_R RPN7, 26S proteasome re 73.9 9.8 0.00033 42.0 9.6 98 514-611 130-231 (429)
295 4b4t_S RPN3, 26S proteasome re 73.2 9.5 0.00032 42.7 9.0 141 649-813 145-303 (523)
296 2eqx_A Kelch repeat and BTB do 72.5 2.7 9.1E-05 36.2 3.6 34 286-319 8-41 (105)
297 2wpv_A GET4, UPF0363 protein Y 71.4 42 0.0015 34.9 13.1 151 749-904 34-215 (312)
298 2wpv_A GET4, UPF0363 protein Y 71.0 79 0.0027 32.8 15.0 27 638-664 132-158 (312)
299 2r9r_B Paddle chimera voltage 70.7 4.4 0.00015 45.9 5.9 81 220-307 54-141 (514)
300 4b4t_S RPN3, 26S proteasome re 67.8 4.8 0.00017 45.0 5.2 137 757-911 145-304 (523)
301 4b4t_P 26S proteasome regulato 67.0 1.5E+02 0.0052 32.4 26.5 102 674-809 137-247 (445)
302 2z8h_A Transcription regulator 65.5 2.3 7.7E-05 38.7 1.7 34 318-352 101-134 (138)
303 1r29_A B-cell lymphoma 6 prote 64.1 5.5 0.00019 35.4 4.0 32 318-350 95-126 (127)
304 2yy9_A Zinc finger and BTB dom 62.9 3 0.0001 37.7 2.0 36 318-354 87-122 (135)
305 2vpk_A Myoneurin; transcriptio 58.6 6.9 0.00024 34.1 3.5 30 318-348 86-115 (116)
306 2q81_A MIZ-1 protein; BTB/POZ 58.0 7.8 0.00027 34.0 3.8 30 318-348 88-117 (119)
307 3lpz_A GET4 (YOR164C homolog); 57.6 1.9E+02 0.0064 30.3 26.7 29 419-447 35-63 (336)
308 3lvg_A Clathrin heavy chain 1; 57.0 0.006 2E-07 66.7 -19.8 250 637-897 51-324 (624)
309 3b84_A Zinc finger and BTB dom 55.8 5.3 0.00018 35.1 2.3 32 318-350 86-117 (119)
310 1buo_A POZ domain, protein (pr 55.3 11 0.00038 33.0 4.3 31 318-349 89-119 (121)
311 3ax2_A Mitochondrial import re 54.6 23 0.00079 27.9 5.4 37 883-919 23-59 (73)
312 2if5_A Zinc finger and BTB dom 52.9 12 0.0004 32.7 4.1 29 318-347 91-119 (120)
313 3htm_A Speckle-type POZ protei 51.8 9.6 0.00033 35.7 3.6 34 286-319 132-165 (172)
314 3lvg_A Clathrin heavy chain 1; 51.2 0.12 4.3E-06 56.6 -10.8 259 482-770 53-326 (624)
315 2plx_B Peptide inhibitor; heli 47.9 13 0.00044 21.5 2.1 21 326-346 3-23 (26)
316 2w2u_A Hypothetical P60 katani 44.8 98 0.0033 25.0 8.0 32 417-448 17-48 (83)
317 4ady_A RPN2, 26S proteasome re 43.8 5.1E+02 0.017 31.3 23.8 370 518-905 233-622 (963)
318 2ast_A S-phase kinase-associat 43.3 27 0.00092 32.3 5.1 65 286-353 49-128 (159)
319 2ppi_A Gigaxonin; BTB domain, 40.6 11 0.00039 34.3 2.0 29 318-347 115-143 (144)
320 3hqi_A Speckle-type POZ protei 39.7 17 0.0006 37.9 3.6 34 286-319 272-305 (312)
321 3m5b_A Zinc finger and BTB dom 39.6 20 0.00067 31.4 3.3 50 286-349 68-117 (119)
322 4eoz_A Speckle-type POZ protei 37.7 13 0.00045 33.5 2.0 31 321-351 93-123 (145)
323 4gq2_M Nucleoporin NUP120; bet 37.2 5.4E+02 0.018 31.2 16.8 108 645-777 815-926 (950)
324 1fs1_B SKP1, cyclin A/CDK2-ass 37.1 79 0.0027 28.4 7.1 82 269-353 25-123 (141)
325 3ax2_A Mitochondrial import re 35.5 58 0.002 25.6 5.0 34 848-881 21-54 (73)
326 2v6y_A AAA family ATPase, P60 35.4 1.3E+02 0.0045 24.1 7.4 32 417-448 9-40 (83)
327 3lpz_A GET4 (YOR164C homolog); 32.8 4.4E+02 0.015 27.4 25.4 27 671-697 133-159 (336)
328 1om2_A Protein (mitochondrial 32.6 38 0.0013 28.2 3.7 30 849-878 25-54 (95)
329 3ga1_A Nucleus accumbens-assoc 31.8 7 0.00024 34.8 -1.0 32 318-350 96-127 (129)
330 3re2_A Predicted protein; meni 30.6 1.8E+02 0.0063 30.4 9.0 44 499-542 275-323 (472)
331 2crb_A Nuclear receptor bindin 30.1 78 0.0027 26.0 4.9 31 418-448 14-44 (97)
332 4gq2_M Nucleoporin NUP120; bet 30.0 2.3E+02 0.0079 34.5 11.9 75 630-704 830-927 (950)
333 3hve_A Gigaxonin; ubiquitin, c 28.2 36 0.0012 34.2 3.6 33 318-351 99-131 (256)
334 2v6y_A AAA family ATPase, P60 28.1 43 0.0015 27.1 3.3 16 856-871 23-38 (83)
335 3u84_A Menin; MLL, JUND, ledgf 27.4 2.1E+02 0.0073 30.5 8.9 44 499-542 297-345 (550)
336 3i3n_A Kelch-like protein 11; 25.6 38 0.0013 34.6 3.2 33 318-351 107-139 (279)
337 2w2u_A Hypothetical P60 katani 24.6 1.1E+02 0.0037 24.7 5.0 26 751-776 22-47 (83)
338 2crb_A Nuclear receptor bindin 23.4 90 0.0031 25.6 4.2 27 845-871 16-42 (97)
339 2ijq_A Hypothetical protein; s 22.5 2.6E+02 0.0088 25.7 7.8 58 848-905 36-103 (161)
340 2vkj_A TM1634; membrane protei 22.2 2.3E+02 0.0077 23.0 6.1 33 417-449 51-83 (106)
341 2cmy_B Beta trypsin, veronica 22.0 26 0.00087 21.6 0.6 22 326-347 8-29 (34)
342 2ihc_A Transcription regulator 21.8 6.9 0.00024 34.6 -3.0 30 318-348 94-123 (124)
343 1wfd_A Hypothetical protein 15 21.5 1.1E+02 0.0037 25.3 4.6 31 418-448 14-44 (93)
344 4a5x_A MITD1, MIT domain-conta 21.4 1.2E+02 0.004 24.7 4.7 30 419-448 16-45 (86)
345 3t5x_A PCI domain-containing p 21.1 1.7E+02 0.0057 28.1 6.6 37 417-453 12-48 (203)
346 2v6x_A Vacuolar protein sortin 20.8 1.2E+02 0.0041 24.4 4.7 31 418-448 12-42 (85)
No 1
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=5.6e-36 Score=338.26 Aligned_cols=372 Identities=17% Similarity=0.161 Sum_probs=347.0
Q ss_pred HHHHHHhhhh--HHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccC-CHhHHHHHHHHHHHhccHH
Q 002379 489 QERSLYNLGR--EKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYE 565 (929)
Q Consensus 489 ~~~~l~~~~~--~Ai~~~~kal~l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~~g~~~ 565 (929)
.+..++..++ +|+..++++++.+|+++.++..+|.++...|++++|...+++++...| ++..+..+|.++...|+++
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 3445555555 899999999999999999999999999999999999999999999888 7888999999999999999
Q ss_pred HHHHHHHHHHhhcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHH
Q 002379 566 SALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFR 645 (929)
Q Consensus 566 ~A~~~~~~al~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~ 645 (929)
+|+..|+++++.+|++. .++..++.++...|++++|...+ .++++.+|+...++..
T Consensus 85 ~A~~~~~~al~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~------------------~~al~~~p~~~~~~~~ 140 (388)
T 1w3b_A 85 EAIEHYRHALRLKPDFI------DGYINLAAALVAAGDMEGAVQAY------------------VSALQYNPDLYCVRSD 140 (388)
T ss_dssp HHHHHHHHHHHHCTTCH------HHHHHHHHHHHHHSCSSHHHHHH------------------HHHHHHCTTCTHHHHH
T ss_pred HHHHHHHHHHHcCcchH------HHHHHHHHHHHHcCCHHHHHHHH------------------HHHHHhCCCcHHHHHH
Confidence 99999999999999998 77888999999999999995555 9999999999999999
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHHHHHhcCCCCC
Q 002379 646 QSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPE 725 (929)
Q Consensus 646 lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~l~~~l~~~~~~~~ 725 (929)
+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++++|++
T Consensus 141 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~------------------ 202 (388)
T 1w3b_A 141 LGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNF------------------ 202 (388)
T ss_dssp HHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC------------------
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc------------------
Confidence 99999999999999999999999999999999999999999999999999999999999977
Q ss_pred ChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHhCCHHHHHHHH
Q 002379 726 SSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI--KHTRAHQGLARVYYLKNELKAAYDEM 803 (929)
Q Consensus 726 ~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~--~~~~a~~~la~~~~~~g~~~~A~~~~ 803 (929)
..++..+|.++...|++++|+..|++++.. +++.++..+|.++...|++++|+..+
T Consensus 203 ----------------------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 260 (388)
T 1w3b_A 203 ----------------------LDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTY 260 (388)
T ss_dssp ----------------------HHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ----------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 456888999999999999999999999998 45689999999999999999999999
Q ss_pred HHHHHHccCCHHHHHHHh----hhCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchH
Q 002379 804 TKLLEKAQYSASAFEKRS----EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQM 879 (929)
Q Consensus 804 ~~al~~~p~~~~~~~~lg----~~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~ 879 (929)
+++++..|+++.++..+| ..|++++|+..|+++++.+|.++.++..+|.++...|++++|+..|+++++..|++..
T Consensus 261 ~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 340 (388)
T 1w3b_A 261 RRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAA 340 (388)
T ss_dssp HHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHH
T ss_pred HHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH
Confidence 999999999999999888 6799999999999999999999999999999999999999999999999999999875
Q ss_pred HH-HHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHhhh
Q 002379 880 LH-LRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNRARDQA 924 (929)
Q Consensus 880 ~~-~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~l~~~~ 924 (929)
.+ .+|.++...|++++|+..|+++++++|++++++..++.+....
T Consensus 341 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~ 386 (388)
T 1w3b_A 341 AHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEM 386 (388)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHc
Confidence 55 7899999999999999999999999999999999998876543
No 2
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=2.2e-35 Score=333.40 Aligned_cols=375 Identities=17% Similarity=0.110 Sum_probs=344.0
Q ss_pred HhhHHHHhcccHHHHHHHHHHHHhcCccccHH--HHHHHHHHhchHHHHHHHHHhhhccCCCchhhhHHHHHHhhhhHHH
Q 002379 424 QLGCVMFEREEYKDACYYFEAAADAGHIYSLA--GLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNLGREKI 501 (929)
Q Consensus 424 ~lG~~~~~~g~y~~A~~~f~~al~~~~~~~~a--~la~~~~~~g~a~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Ai 501 (929)
.+|..++..|++++|+..|+++++.+|.+..+ .++.++...| ..++|+
T Consensus 4 ~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~------------------------------~~~~a~ 53 (388)
T 1w3b_A 4 ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCR------------------------------RLDRSA 53 (388)
T ss_dssp THHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT------------------------------CHHHHH
T ss_pred hHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC------------------------------CHHHHH
Confidence 46888999999999999999999999987652 1222222111 334788
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccC-CHhHHHHHHHHHHHhccHHHHHHHHHHHHhhcCC
Q 002379 502 VDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLALLALESN 580 (929)
Q Consensus 502 ~~~~kal~l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~ 580 (929)
..++++++.+|.++.+|..+|.++...|++++|+..|++++...| ++..+..+|.++...|++++|+..|+++++.+|+
T Consensus 54 ~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 133 (388)
T 1w3b_A 54 HFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD 133 (388)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT
T ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 899999999999999999999999999999999999999999988 6778999999999999999999999999999999
Q ss_pred chhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHH
Q 002379 581 YMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAM 660 (929)
Q Consensus 581 ~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 660 (929)
+. .++..++.++...|++++|...+ .++++.+|+++.+|..+|.++...|++++|+
T Consensus 134 ~~------~~~~~l~~~~~~~g~~~~A~~~~------------------~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 189 (388)
T 1w3b_A 134 LY------CVRSDLGNLLKALGRLEEAKACY------------------LKAIETQPNFAVAWSNLGCVFNAQGEIWLAI 189 (388)
T ss_dssp CT------HHHHHHHHHHHTTSCHHHHHHHH------------------HHHHHHCTTCHHHHHHHHHHHHTTTCHHHHH
T ss_pred cH------HHHHHHHHHHHHccCHHHHHHHH------------------HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 98 77788999999999999996655 9999999999999999999999999999999
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhc
Q 002379 661 RCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRC 740 (929)
Q Consensus 661 ~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~l~~~l~~~~~~~~~~~~a~~~~e~Al~~ 740 (929)
..|+++++.+|+++.++..+|.++...|++++|+..|++++.++|++
T Consensus 190 ~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~--------------------------------- 236 (388)
T 1w3b_A 190 HHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNH--------------------------------- 236 (388)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTC---------------------------------
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCC---------------------------------
Confidence 99999999999999999999999999999999999999999999977
Q ss_pred hhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHH
Q 002379 741 PSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI--KHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFE 818 (929)
Q Consensus 741 ~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~--~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 818 (929)
..++.++|.++...|++++|+..|+++++. +.+.++..+|.++...|++++|+..++++++..|++..++.
T Consensus 237 -------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 309 (388)
T 1w3b_A 237 -------AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLN 309 (388)
T ss_dssp -------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred -------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHH
Confidence 456888999999999999999999999998 46789999999999999999999999999999999999999
Q ss_pred HHh----hhCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHH-HHHHHHHHcCC
Q 002379 819 KRS----EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLH-LRAAFYESIGD 892 (929)
Q Consensus 819 ~lg----~~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~-~la~~~~~~g~ 892 (929)
.+| ..|++++|+..++++++.+|.+..++..+|.++...|++++|+..|+++++++|+....+ .+|.++..+|+
T Consensus 310 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 310 NLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 888 679999999999999999999999999999999999999999999999999999987655 77999988774
No 3
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.9e-34 Score=341.42 Aligned_cols=444 Identities=15% Similarity=0.050 Sum_probs=343.2
Q ss_pred HHHHHHHhhHHHHhcccHHHHHHHHHHHHhcCccccH-HHHHHHHHHhchHHHHHHHHHhhhccCCCchhhhHHHHHHhh
Q 002379 418 RMLALHQLGCVMFEREEYKDACYYFEAAADAGHIYSL-AGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNL 496 (929)
Q Consensus 418 ~a~~~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~~~-a~la~~~~~~g~a~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 496 (929)
....+..++..+.+.|++++|+..|++++...|+... ..++.++...|+..
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~---------------------------- 134 (597)
T 2xpi_A 83 REDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYA---------------------------- 134 (597)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHH----------------------------
T ss_pred HHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHH----------------------------
Confidence 3456778899999999999999999999987775321 13444444444322
Q ss_pred hhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhccc----------------C-CHhHHHHHHHHHH
Q 002379 497 GREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFK----------------L-SVDCLELRAWLFI 559 (929)
Q Consensus 497 ~~~Ai~~~~kal~l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~----------------~-~~~~~~~~a~~~~ 559 (929)
+|+..|++++.. |.++.++..+|.+|.+.|++++|+..|++..... + ++..+..+|.+|.
T Consensus 135 --~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 211 (597)
T 2xpi_A 135 --RAKCLLTKEDLY-NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYT 211 (597)
T ss_dssp --HHHHHHHHTCGG-GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHhcc-ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHH
Confidence 455555555443 5556667777777777777777777776532211 0 2445666777777
Q ss_pred HhccHHHHHHHHHHHHhhcCCchhhhccc--------------------------------cHHHHHHHHHHhhcccchH
Q 002379 560 AADDYESALRDTLALLALESNYMMFHGRV--------------------------------SGDHLVKLLNHHVRSWSPA 607 (929)
Q Consensus 560 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~--------------------------------~a~~ll~~~~~~~~~~~~A 607 (929)
..|++++|+..|+++++.+|++......+ ..+..++..+...|++++|
T Consensus 212 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A 291 (597)
T 2xpi_A 212 NLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRA 291 (597)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHH
Confidence 77777777777777777766655221100 0011124555667777777
Q ss_pred HHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHc
Q 002379 608 DCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDT 687 (929)
Q Consensus 608 ~~~l~l~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~ 687 (929)
...+ +++++. |.++.++..++..+...|++++|+..|+++++.+|.+..++..++.++...
T Consensus 292 ~~~~------------------~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 352 (597)
T 2xpi_A 292 EDYL------------------SSINGL-EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHES 352 (597)
T ss_dssp HHHH------------------HTSTTG-GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHH
T ss_pred HHHH------------------HHhhcC-CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHh
Confidence 5555 566555 667788888888888888888888888888888888888888888888888
Q ss_pred CCHHHHHHHHHHHHhhccch-HHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCc----hhHHHHHHHHHHHHcC
Q 002379 688 GHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLR----KGQALNNLGSIYVECG 762 (929)
Q Consensus 688 g~~~eA~~~~~~al~~~p~~-~~~~~l~~~l~~~~~~~~~~~~a~~~~e~Al~~~~~al~----~~~a~~~lg~~~~~~g 762 (929)
|++++|+..+++++...|++ ..+..++..+...+ ++++|++.++++++ ...+|..+|.++...|
T Consensus 353 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 421 (597)
T 2xpi_A 353 GEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVN-----------KISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEG 421 (597)
T ss_dssp TCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhc-----------cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 88888888888888888877 77778888887776 66666666666543 2478999999999999
Q ss_pred CHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHh----hhCCHHHHHHHHHHH
Q 002379 763 KLDQAENCYINALDI--KHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS----EYSDREMAKNDLNMA 836 (929)
Q Consensus 763 ~~~eA~~~~~~al~~--~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg----~~g~~~~A~~~~~~a 836 (929)
++++|++.|+++++. ++..++..+|.+|...|++++|++.|+++++..|+++.+|..++ ..|++++|+..|+++
T Consensus 422 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 501 (597)
T 2xpi_A 422 EHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNA 501 (597)
T ss_dssp CHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 999999999999988 45689999999999999999999999999999999999998888 679999999999999
Q ss_pred Hhc------CCCC-cHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHH-HHHHHHHHcCCHHHHHHHHHHHhccCC
Q 002379 837 TQL------DPLR-TYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLH-LRAAFYESIGDLTSAIRDSQAALCLDP 908 (929)
Q Consensus 837 l~l------~p~~-~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~-~la~~~~~~g~~~~A~~~~~~al~l~P 908 (929)
++. +|.. ..+|..+|.++...|++++|++.|+++++.+|+++..+ .+|.+|...|++++|++.|+++++++|
T Consensus 502 ~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p 581 (597)
T 2xpi_A 502 LLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISP 581 (597)
T ss_dssp HHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Confidence 988 5654 78999999999999999999999999999999886555 789999999999999999999999999
Q ss_pred CCHHHHHHHHHHHh
Q 002379 909 NHMETLDLYNRARD 922 (929)
Q Consensus 909 ~~~~a~~~~~~l~~ 922 (929)
+++.++..++.+..
T Consensus 582 ~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 582 NEIMASDLLKRALE 595 (597)
T ss_dssp TCHHHHHHHHHTTC
T ss_pred CChHHHHHHHHHHh
Confidence 99999999887643
No 4
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.2e-32 Score=325.67 Aligned_cols=424 Identities=14% Similarity=0.059 Sum_probs=314.9
Q ss_pred cchHHHHHHHHHhhcchHHHHHHHHHHHhhHHHHhcccHHHHHHHHHHHHhcCccc-cHHHHHHHHHHhchHHHHHHHHH
Q 002379 397 VSNTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGHIY-SLAGLARAKYKVGQQYSAYKLIN 475 (929)
Q Consensus 397 ~~~~~~~~Le~l~~~~~~~~~~a~~~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~-~~a~la~~~~~~g~a~~a~~~~~ 475 (929)
..+.++..++++....++. ..++.+|.++...|++++|+..|++++...+.. ....++..+.+.|+..++.+...
T Consensus 99 ~~~~A~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 174 (597)
T 2xpi_A 99 QYKCAAFVGEKVLDITGNP----NDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLG 174 (597)
T ss_dssp CHHHHHHHHHHHHHHHCCH----HHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHHHHHTTCHHHHHHHHC
T ss_pred CchHHHHHHHHHHhhCCCc----hHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhHHHHHHHHh
Confidence 4466777777776554433 456789999999999999999999997653322 22377888888888777777555
Q ss_pred hhhccC------------------CCchhhhHHHHHHhhhh--HHHHHHHHHHhcCCCChHHHHHHHHHH----------
Q 002379 476 SIISEH------------------KPTGWMYQERSLYNLGR--EKIVDLNYASELDPTLSFPYKYRAVAK---------- 525 (929)
Q Consensus 476 ~~~~~~------------------~~~~~~~~~~~l~~~~~--~Ai~~~~kal~l~P~~~~a~~~~a~~~---------- 525 (929)
+..+.. ....|...+..+...++ +|+..|+++++.+|++..++..++.++
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~ 254 (597)
T 2xpi_A 175 ETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDL 254 (597)
T ss_dssp SSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHH
T ss_pred ccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHH
Confidence 444443 23567777887777776 889999999999998888877765433
Q ss_pred ----------------------------HHhCCHHHHHHHHHHHhcccCCHhHHHHHHHHHHHhccHHHHHHHHHHHHhh
Q 002379 526 ----------------------------MEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLAL 577 (929)
Q Consensus 526 ----------------------------~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~ 577 (929)
.+.|++++|+..|+++++..+++..+..++..+...|++++|+..|+++++.
T Consensus 255 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 334 (597)
T 2xpi_A 255 VLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEI 334 (597)
T ss_dssp HHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHc
Confidence 2455666666666666654445556666666666666666666666666666
Q ss_pred cCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHH
Q 002379 578 ESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQK 657 (929)
Q Consensus 578 ~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~ 657 (929)
+|++. .++..++.++...|++++|...+ .+++..+|+++.++..+|.+|...|+++
T Consensus 335 ~~~~~------~~~~~l~~~~~~~g~~~~A~~~~------------------~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 390 (597)
T 2xpi_A 335 DPYNL------DVYPLHLASLHESGEKNKLYLIS------------------NDLVDRHPEKAVTWLAVGIYYLCVNKIS 390 (597)
T ss_dssp CTTCC------TTHHHHHHHHHHHTCHHHHHHHH------------------HHHHHHCTTSHHHHHHHHHHHHHTTCHH
T ss_pred CcccH------HHHHHHHHHHHHhCCHHHHHHHH------------------HHHHhhCcccHHHHHHHHHHHHHhccHH
Confidence 66555 44555566666666666664443 5556666666666666666666666666
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHHHHHhcCCCCCChHHHHHHHHHH
Q 002379 658 AAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEA 737 (929)
Q Consensus 658 ~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~l~~~l~~~~~~~~~~~~a~~~~e~A 737 (929)
+|+..|+++++.+|.+..+|..+|.+|...|++++|+..|+++++..|++
T Consensus 391 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------------------------------ 440 (597)
T 2xpi_A 391 EARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGT------------------------------ 440 (597)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTC------------------------------
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc------------------------------
Confidence 66666666666666666666666666666666666666666666655544
Q ss_pred hhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH------
Q 002379 738 LRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI--KHTRAHQGLARVYYLKNELKAAYDEMTKLLEK------ 809 (929)
Q Consensus 738 l~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~--~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~------ 809 (929)
..++..+|.++...|++++|+..|+++++. .++.++..+|.++...|++++|++.|+++++.
T Consensus 441 ----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 510 (597)
T 2xpi_A 441 ----------HLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQS 510 (597)
T ss_dssp ----------SHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred ----------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhcccc
Confidence 466888999999999999999999999987 56789999999999999999999999999998
Q ss_pred ccCC-HHHHHHHh----hhCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHH-HH
Q 002379 810 AQYS-ASAFEKRS----EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLH-LR 883 (929)
Q Consensus 810 ~p~~-~~~~~~lg----~~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~-~l 883 (929)
.|++ ..+|..+| ..|++++|+..|+++++.+|.++.+|..+|.+|...|++++|++.|+++++++|+++..+ .+
T Consensus 511 ~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l 590 (597)
T 2xpi_A 511 NEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLL 590 (597)
T ss_dssp CSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 4443 66788777 679999999999999999999999999999999999999999999999999999997665 66
Q ss_pred HHHHH
Q 002379 884 AAFYE 888 (929)
Q Consensus 884 a~~~~ 888 (929)
+.+|.
T Consensus 591 ~~~~~ 595 (597)
T 2xpi_A 591 KRALE 595 (597)
T ss_dssp HHTTC
T ss_pred HHHHh
Confidence 77654
No 5
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-31 Score=313.99 Aligned_cols=412 Identities=17% Similarity=0.107 Sum_probs=333.9
Q ss_pred HHHHHHHHhhHHHHhcccHHHHHHHHHHHHhcCccccHHHHHHHHHHhchHHHHHHHHHhhhccCCCchhhhHHHHHHhh
Q 002379 417 QRMLALHQLGCVMFEREEYKDACYYFEAAADAGHIYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNL 496 (929)
Q Consensus 417 ~~a~~~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~~~a~la~~~~~~g~a~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 496 (929)
..+.+++.+|..++..|+|++|+..|+++++.+|+ .. .+...|......+ .
T Consensus 4 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~-----~~~~la~~~~~~g-----------------------~ 54 (514)
T 2gw1_A 4 KYALALKDKGNQFFRNKKYDDAIKYYNWALELKED-PV-----FYSNLSACYVSVG-----------------------D 54 (514)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCC-HH-----HHHHHHHHHHHHT-----------------------C
T ss_pred hhHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-HH-----HHHhHHHHHHHHh-----------------------h
Confidence 46778999999999999999999999999999884 22 2332232222111 3
Q ss_pred hhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccC-CHhHHHHHHHHH---HHhccHHHHHHHHH
Q 002379 497 GREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLF---IAADDYESALRDTL 572 (929)
Q Consensus 497 ~~~Ai~~~~kal~l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~---~~~g~~~~A~~~~~ 572 (929)
.++|+..|+++++++|+++.+++.+|.++...|++++|+..|++++...| +........... ...+...+++..++
T Consensus 55 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 134 (514)
T 2gw1_A 55 LKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDID 134 (514)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC-----
T ss_pred HHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44899999999999999999999999999999999999999999998887 222221111111 12222222222211
Q ss_pred HHHhh------------------c------------------------CCchhhhccccHHHHHHHHHHh---hcccchH
Q 002379 573 ALLAL------------------E------------------------SNYMMFHGRVSGDHLVKLLNHH---VRSWSPA 607 (929)
Q Consensus 573 ~al~~------------------~------------------------p~~~~~~~~~~a~~ll~~~~~~---~~~~~~A 607 (929)
.+... . |++. ..+...+..... .|++++|
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~A 208 (514)
T 2gw1_A 135 TATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEA------DKELMNGLSNLYKRSPESYDKA 208 (514)
T ss_dssp ----------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHH------HHHHHHHHHHHSSCCTTHHHHH
T ss_pred HHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHH------HHHHHHHHHHHHhhhhccHHHH
Confidence 11100 0 1112 455556666654 7888888
Q ss_pred HHHHHhhhccccccccccHHHHHHHHh-----c--C-------CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCch
Q 002379 608 DCWIKLYDRWSSVDDIGSLAVINQMLI-----N--D-------PGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE 673 (929)
Q Consensus 608 ~~~l~l~~~~~~~~~~~~l~~~~~al~-----~--~-------p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~ 673 (929)
...+ .+++. . + |.++.++..+|.++...|++++|+..++++++.+|.
T Consensus 209 ~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~- 269 (514)
T 2gw1_A 209 DESF------------------TKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR- 269 (514)
T ss_dssp HHHH------------------HHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-
T ss_pred HHHH------------------HHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-
Confidence 5555 77777 4 3 455778999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHH
Q 002379 674 HERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNN 753 (929)
Q Consensus 674 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~l~~~l~~~~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~ 753 (929)
+.++..+|.++...|++++|+..+++++..+|++ ..++..
T Consensus 270 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----------------------------------------~~~~~~ 309 (514)
T 2gw1_A 270 VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNN----------------------------------------SSVYYH 309 (514)
T ss_dssp HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTC----------------------------------------THHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCC----------------------------------------HHHHHH
Confidence 9999999999999999999999999999998876 445788
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHh----hhCCHH
Q 002379 754 LGSIYVECGKLDQAENCYINALDI--KHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS----EYSDRE 827 (929)
Q Consensus 754 lg~~~~~~g~~~eA~~~~~~al~~--~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg----~~g~~~ 827 (929)
+|.++...|++++|+..|+++++. .++.++..+|.++...|++++|+..++++++..|+++.++..+| ..|+++
T Consensus 310 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 389 (514)
T 2gw1_A 310 RGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFD 389 (514)
T ss_dssp HHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHH
Confidence 899999999999999999999988 45689999999999999999999999999999999999988888 679999
Q ss_pred HHHHHHHHHHhcCCCCcH------HHHHHHHHHHh---cCCHHHHHHHHHHHHhcCCCchHHH-HHHHHHHHcCCHHHHH
Q 002379 828 MAKNDLNMATQLDPLRTY------PYRYRAAVLMD---DQKEVEAVEELSKAIAFKPDLQMLH-LRAAFYESIGDLTSAI 897 (929)
Q Consensus 828 ~A~~~~~~al~l~p~~~~------~~~~la~~~~~---~g~~~eA~~~l~kal~~~p~~~~~~-~la~~~~~~g~~~~A~ 897 (929)
+|+..++++++.+|.++. ++..+|.++.. .|++++|+..|+++++.+|++...+ .+|.++...|++++|+
T Consensus 390 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~ 469 (514)
T 2gw1_A 390 KALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAI 469 (514)
T ss_dssp HHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHH
Confidence 999999999999988755 99999999999 9999999999999999999887655 7799999999999999
Q ss_pred HHHHHHhccCCCCHHHHHHHHHHHh
Q 002379 898 RDSQAALCLDPNHMETLDLYNRARD 922 (929)
Q Consensus 898 ~~~~~al~l~P~~~~a~~~~~~l~~ 922 (929)
..|+++++++|++++++..+.....
T Consensus 470 ~~~~~a~~~~~~~~~~~~~~~~~~~ 494 (514)
T 2gw1_A 470 TLFEESADLARTMEEKLQAITFAEA 494 (514)
T ss_dssp HHHHHHHHHCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccHHHHHHHHHHHH
Confidence 9999999999999999887765544
No 6
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=100.00 E-value=2.8e-31 Score=312.83 Aligned_cols=413 Identities=14% Similarity=0.097 Sum_probs=313.0
Q ss_pred HHHHHHHHHhhHHHHhcccHHHHHHHHHHHHhcCccccHHHHHHHHHHhchHHHHHHHHHhhhccCCCchhhhHHHHHHh
Q 002379 416 WQRMLALHQLGCVMFEREEYKDACYYFEAAADAGHIYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYN 495 (929)
Q Consensus 416 ~~~a~~~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~~~a~la~~~~~~g~a~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 495 (929)
...+.+++.+|..++..|+|++|+..|+++++.+|.+.. .+...|......+
T Consensus 22 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~-----~~~~la~~~~~~g----------------------- 73 (537)
T 3fp2_A 22 QAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPV-----FYSNISACYISTG----------------------- 73 (537)
T ss_dssp HHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHH-----HHHHHHHHHHHHT-----------------------
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcH-----HHHHHHHHHHHcC-----------------------
Confidence 356789999999999999999999999999999988765 2222222222111
Q ss_pred hhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccCCHhHHHHHHHHHHHhccHHHHHHHHHHHH
Q 002379 496 LGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALL 575 (929)
Q Consensus 496 ~~~~Ai~~~~kal~l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al 575 (929)
..++|+..|+++++++|+++.+++.+|.++...|++++|+..|+ ++...|+.. ......+...+...+|+..+++++
T Consensus 74 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~a~~~~~~~l 150 (537)
T 3fp2_A 74 DLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLS-VLSLNGDFD--GASIEPMLERNLNKQAMKVLNENL 150 (537)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH-HHC-------------CHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHH-HHhcCCCCC--hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34489999999999999999999999999999999999999996 776665322 222345566777788999999998
Q ss_pred hhcCCchhhhccc--c-----------------------------HHHHHH--------HHHHhhcccchHHHHHHhhhc
Q 002379 576 ALESNYMMFHGRV--S-----------------------------GDHLVK--------LLNHHVRSWSPADCWIKLYDR 616 (929)
Q Consensus 576 ~~~p~~~~~~~~~--~-----------------------------a~~ll~--------~~~~~~~~~~~A~~~l~l~~~ 616 (929)
...|......... . ....+. ......+++++|
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A--------- 221 (537)
T 3fp2_A 151 SKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKS--------- 221 (537)
T ss_dssp C-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHH---------
T ss_pred HhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH---------
Confidence 8765443110000 0 011111 111222344444
Q ss_pred cccccccccHHHHHHHHhcCCCChH-------HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCC
Q 002379 617 WSSVDDIGSLAVINQMLINDPGKSF-------LRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGH 689 (929)
Q Consensus 617 ~~~~~~~~~l~~~~~al~~~p~~~~-------~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~ 689 (929)
+..++++++.+|+++. ++..+|.++...|++++|+..|+++++.+|+ +.++..+|.++...|+
T Consensus 222 ---------~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~ 291 (537)
T 3fp2_A 222 ---------TDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKEN 291 (537)
T ss_dssp ---------HHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSC
T ss_pred ---------HHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcC
Confidence 5555999999999865 5778888999999999999999999999999 9999999999999999
Q ss_pred HHHHHHHHHHHHhhccchHHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHH
Q 002379 690 REEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAEN 769 (929)
Q Consensus 690 ~~eA~~~~~~al~~~p~~~~~~~l~~~l~~~~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~ 769 (929)
+++|+..++++++.+|++ ..++..+|.++...|++++|+.
T Consensus 292 ~~~A~~~~~~~~~~~~~~----------------------------------------~~~~~~l~~~~~~~~~~~~A~~ 331 (537)
T 3fp2_A 292 SQEFFKFFQKAVDLNPEY----------------------------------------PPTYYHRGQMYFILQDYKNAKE 331 (537)
T ss_dssp CHHHHHHHHHHHHHCTTC----------------------------------------HHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhccCCCC----------------------------------------HHHHHHHHHHHHhcCCHHHHHH
Confidence 999999999999999977 4457778888888888888888
Q ss_pred HHHHHHcC--CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHh----hhCCHHHHHHHHHHHHhcCCCC
Q 002379 770 CYINALDI--KHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS----EYSDREMAKNDLNMATQLDPLR 843 (929)
Q Consensus 770 ~~~~al~~--~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg----~~g~~~~A~~~~~~al~l~p~~ 843 (929)
.|+++++. +.+.++..+|.++...|++++|+..++++++..|++..++..+| ..|++++|+..|+++++.+|.+
T Consensus 332 ~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 411 (537)
T 3fp2_A 332 DFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQ 411 (537)
T ss_dssp HHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcc
Confidence 88888887 44578888888888888888888888888888888888888877 5688888888888888877744
Q ss_pred cH------HHHHHHHHHHhc----------CCHHHHHHHHHHHHhcCCCchHHH-HHHHHHHHcCCHHHHHHHHHHHhcc
Q 002379 844 TY------PYRYRAAVLMDD----------QKEVEAVEELSKAIAFKPDLQMLH-LRAAFYESIGDLTSAIRDSQAALCL 906 (929)
Q Consensus 844 ~~------~~~~la~~~~~~----------g~~~eA~~~l~kal~~~p~~~~~~-~la~~~~~~g~~~~A~~~~~~al~l 906 (929)
.. .+..+|.++... |++++|+..|+++++.+|++...+ .+|.+|...|++++|+..|++++++
T Consensus 412 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 412 EKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp SSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 33 355667888888 999999999999999988886555 6799999999999999999999999
Q ss_pred CCCCHHHHHHHH
Q 002379 907 DPNHMETLDLYN 918 (929)
Q Consensus 907 ~P~~~~a~~~~~ 918 (929)
+|++++......
T Consensus 492 ~~~~~~~~~~~~ 503 (537)
T 3fp2_A 492 ARTMDEKLQATT 503 (537)
T ss_dssp C--CHHHHHHHH
T ss_pred CCCcHHHHHHHh
Confidence 998888766544
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.97 E-value=2.2e-29 Score=289.71 Aligned_cols=348 Identities=14% Similarity=0.110 Sum_probs=298.1
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccC-CHhHHHHHHHHHHHhccHHHHHHHHHHHHhh
Q 002379 499 EKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLALLAL 577 (929)
Q Consensus 499 ~Ai~~~~kal~l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~ 577 (929)
.+...+.+++..+|+++..++.+|..+...|++++|+..|+++++..| ++..+..+|.++...|++++|+..|+++++.
T Consensus 10 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 89 (450)
T 2y4t_A 10 GVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQL 89 (450)
T ss_dssp -------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cccccccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 456677888899999999999999999999999999999999998887 7888999999999999999999999999999
Q ss_pred cCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCCh---HHHHHH--------
Q 002379 578 ESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKS---FLRFRQ-------- 646 (929)
Q Consensus 578 ~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~~p~~~---~~~~~l-------- 646 (929)
+|++. .++..++.++...|++++|...+ ++++..+|++. .++..+
T Consensus 90 ~p~~~------~~~~~l~~~~~~~g~~~~A~~~~------------------~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 145 (450)
T 2y4t_A 90 KMDFT------AARLQRGHLLLKQGKLDEAEDDF------------------KKVLKSNPSENEEKEAQSQLIKSDEMQR 145 (450)
T ss_dssp CTTCH------HHHHHHHHHHHHTTCHHHHHHHH------------------HHHHTSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcH------HHHHHHHHHHHHcCCHHHHHHHH------------------HHHHhcCCCChhhHHHHHHHHHHHHHHH
Confidence 99988 77888999999999999996665 89999999888 766555
Q ss_pred ----HHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHHHHHhcCC
Q 002379 647 ----SLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNL 722 (929)
Q Consensus 647 ----g~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~l~~~l~~~~~ 722 (929)
|..+...|++++|+..|+++++..|.++.++..+|.+|...|++++|+..|+++++.+|++
T Consensus 146 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--------------- 210 (450)
T 2y4t_A 146 LRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDN--------------- 210 (450)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSC---------------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---------------
Confidence 6679999999999999999999999999999999999999999999999999999998877
Q ss_pred CCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC--CCHHHHHHH------------HH
Q 002379 723 DPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI--KHTRAHQGL------------AR 788 (929)
Q Consensus 723 ~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~--~~~~a~~~l------------a~ 788 (929)
..++..+|.++...|++++|+..|++++.. ++...+..+ |.
T Consensus 211 -------------------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 265 (450)
T 2y4t_A 211 -------------------------TEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAE 265 (450)
T ss_dssp -------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 455888999999999999999999999988 344555444 99
Q ss_pred HHHHhCCHHHHHHHHHHHHHHccCCHH----HHHHHh----hhCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCH
Q 002379 789 VYYLKNELKAAYDEMTKLLEKAQYSAS----AFEKRS----EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKE 860 (929)
Q Consensus 789 ~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~lg----~~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~ 860 (929)
++...|++++|+..|+++++..|+++. .+..+| ..|++++|+..++++++.+|.++.+|..+|.++...|++
T Consensus 266 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~ 345 (450)
T 2y4t_A 266 ELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMY 345 (450)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCH
Confidence 999999999999999999999999854 566666 679999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCchHHH-HHHH------------HHHHcC-----CHHHHHHHHHH-HhccCCCC
Q 002379 861 VEAVEELSKAIAFKPDLQMLH-LRAA------------FYESIG-----DLTSAIRDSQA-ALCLDPNH 910 (929)
Q Consensus 861 ~eA~~~l~kal~~~p~~~~~~-~la~------------~~~~~g-----~~~~A~~~~~~-al~l~P~~ 910 (929)
++|+..|+++++++|+++..+ .++. +|..+| +.+++.+.|++ +++.+|++
T Consensus 346 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~ 414 (450)
T 2y4t_A 346 DEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDN 414 (450)
T ss_dssp HHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGG
T ss_pred HHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCC
Confidence 999999999999999987665 5563 344455 66788999997 88888875
No 8
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.97 E-value=2.1e-28 Score=271.33 Aligned_cols=316 Identities=15% Similarity=0.084 Sum_probs=255.8
Q ss_pred hHHHHHHHHHHHhccHHHHHHHHHHHHhhcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHH
Q 002379 549 DCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAV 628 (929)
Q Consensus 549 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~ 628 (929)
+.+..+|..+...|++++|+..|+++++.+|+++ .++..+|.++...|++++|...+
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~------~~~~~~a~~~~~~~~~~~A~~~~----------------- 60 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGDPDNY------IAYYRRATVFLAMGKSKAALPDL----------------- 60 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHHHTCHHHHHHHH-----------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccH------HHHHHHHHHHHHccCHHHHHHHH-----------------
Confidence 3444555555555555555555555555555555 44445555555555555553333
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC---chHHHHHHH------------HHHHHHcCCHHHH
Q 002379 629 INQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSS---SEHERLVYE------------GWILYDTGHREEA 693 (929)
Q Consensus 629 ~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p---~~~~~~~~l------------g~~~~~~g~~~eA 693 (929)
.++++.+|+++.++..+|.++...|++++|+..|+++++.+| +++.++..+ |.++...|++++|
T Consensus 61 -~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A 139 (359)
T 3ieg_A 61 -TKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAA 139 (359)
T ss_dssp -HHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred -HHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHH
Confidence 555555566666677777777778888888888888888887 777776666 7899999999999
Q ss_pred HHHHHHHHhhccchHHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002379 694 LSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYIN 773 (929)
Q Consensus 694 ~~~~~~al~~~p~~~~~~~l~~~l~~~~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~ 773 (929)
+..++++++..|++ ..++..+|.++...|++++|+..+++
T Consensus 140 ~~~~~~~~~~~~~~----------------------------------------~~~~~~~~~~~~~~~~~~~A~~~~~~ 179 (359)
T 3ieg_A 140 ITFLDKILEVCVWD----------------------------------------AELRELRAECFIKEGEPRKAISDLKA 179 (359)
T ss_dssp HHHHHHHHHHCTTC----------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCc----------------------------------------hHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999998877 45588899999999999999999999
Q ss_pred HHcC--CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHH------------h----hhCCHHHHHHHHHH
Q 002379 774 ALDI--KHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKR------------S----EYSDREMAKNDLNM 835 (929)
Q Consensus 774 al~~--~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l------------g----~~g~~~~A~~~~~~ 835 (929)
+++. .++.++..+|.++...|++++|+..++++++..|++..++... | ..|++++|+..+++
T Consensus 180 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 259 (359)
T 3ieg_A 180 ASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYES 259 (359)
T ss_dssp HHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9998 5678999999999999999999999999999999998865422 3 57999999999999
Q ss_pred HHhcCCCCcH----HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHH-HHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 002379 836 ATQLDPLRTY----PYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLH-LRAAFYESIGDLTSAIRDSQAALCLDPNH 910 (929)
Q Consensus 836 al~l~p~~~~----~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~-~la~~~~~~g~~~~A~~~~~~al~l~P~~ 910 (929)
+++..|.++. ++..+|.++...|++++|+..|+++++.+|+++..+ .+|.++...|++++|+..|+++++++|++
T Consensus 260 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~ 339 (359)
T 3ieg_A 260 VMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNEND 339 (359)
T ss_dssp HHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC
T ss_pred HHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 9999998874 466799999999999999999999999999887555 77999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhc
Q 002379 911 METLDLYNRARDQASHQQ 928 (929)
Q Consensus 911 ~~a~~~~~~l~~~~~~~~ 928 (929)
+.++..+.++.....+.+
T Consensus 340 ~~~~~~l~~~~~~~~~~~ 357 (359)
T 3ieg_A 340 QQIREGLEKAQRLLKQSQ 357 (359)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhc
Confidence 999999999988776644
No 9
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.97 E-value=1e-29 Score=294.72 Aligned_cols=393 Identities=10% Similarity=-0.013 Sum_probs=280.2
Q ss_pred HHHHHHHHhhHHHHhcccHHHHHHHHHHHHhcCccccHHHHHHHHHHhchHHHHHHHHHhhhccCCCchhhhHHHHHHhh
Q 002379 417 QRMLALHQLGCVMFEREEYKDACYYFEAAADAGHIYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNL 496 (929)
Q Consensus 417 ~~a~~~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~~~a~la~~~~~~g~a~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 496 (929)
..+..|..+|.++..+|+|++|++.|++|+++.+...
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~------------------------------------------- 85 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEH------------------------------------------- 85 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHS-------------------------------------------
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcC-------------------------------------------
Confidence 4567888999999999999999999999987522111
Q ss_pred hhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccC---------CHhHHHHHHHHHHHh--ccHH
Q 002379 497 GREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL---------SVDCLELRAWLFIAA--DDYE 565 (929)
Q Consensus 497 ~~~Ai~~~~kal~l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~---------~~~~~~~~a~~~~~~--g~~~ 565 (929)
....+|....+|.++|.+|..+|++++|+..+++++.+.+ .+..+..+|+.+... ++|+
T Consensus 86 ----------~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~ 155 (472)
T 4g1t_A 86 ----------ADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNE 155 (472)
T ss_dssp ----------GGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHH
T ss_pred ----------ccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHH
Confidence 1124677788899999999999999999999999987643 456788888887665 5799
Q ss_pred HHHHHHHHHHhhcCCchhhhccccHHHHHHHHHHhh---cccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHH
Q 002379 566 SALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHV---RSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFL 642 (929)
Q Consensus 566 ~A~~~~~~al~~~p~~~~~~~~~~a~~ll~~~~~~~---~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~~p~~~~~ 642 (929)
+|+..|+++++++|+++ .++..++.+.... +..++| +..++++++.+|+++.+
T Consensus 156 ~A~~~~~kal~~~p~~~------~~~~~~~~~~~~l~~~~~~~~a------------------l~~~~~al~l~p~~~~~ 211 (472)
T 4g1t_A 156 RAKVCFEKALEKKPKNP------EFTSGLAIASYRLDNWPPSQNA------------------IDPLRQAIRLNPDNQYL 211 (472)
T ss_dssp HHHHHHHHHHHHSTTCH------HHHHHHHHHHHHHHHSCCCCCT------------------HHHHHHHHHHCSSCHHH
T ss_pred HHHHHHHHHHHhCCCCH------HHHHHHHHHHHHhcCchHHHHH------------------HHHHHHHhhcCCcchHH
Confidence 99999999999999999 5565666665443 444555 55559999999999999
Q ss_pred HHHHHHHHHH----hcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch-HHHHHHHHHH
Q 002379 643 RFRQSLLLLR----LNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYIL 717 (929)
Q Consensus 643 ~~~lg~~~~~----~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~~~~~l~~~l 717 (929)
+..+|..+.. .|++++|+..+++++..+|..+.++..+|.+|...|++++|+..|+++++.+|++ .++..+|.++
T Consensus 212 ~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y 291 (472)
T 4g1t_A 212 KVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCY 291 (472)
T ss_dssp HHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 9999877665 4678899999999999999999999999999999999999999999999999999 8888888876
Q ss_pred HhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHhCC
Q 002379 718 ADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNE 795 (929)
Q Consensus 718 ~~~~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~--~~~a~~~la~~~~~~g~ 795 (929)
.... ....+. .....+......+.+++|+..|+++++.+ ...++..+|.++...|+
T Consensus 292 ~~~~-----------~~~~~~-----------~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~ 349 (472)
T 4g1t_A 292 RAKV-----------FQVMNL-----------RENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQ 349 (472)
T ss_dssp HHHH-----------HHHHHC-----------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTC
T ss_pred HHHH-----------HHhhhH-----------HHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhcc
Confidence 5432 111111 12222333333445678888888888773 44578888888888888
Q ss_pred HHHHHHHHHHHHHHccCCHH---HHHHHh-----hhCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHH
Q 002379 796 LKAAYDEMTKLLEKAQYSAS---AFEKRS-----EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEEL 867 (929)
Q Consensus 796 ~~~A~~~~~~al~~~p~~~~---~~~~lg-----~~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l 867 (929)
+++|+..|+++++..|++.. .+...| ..|++++|+..|+++++++|........ ...+...+
T Consensus 350 ~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~----------~~~l~~~~ 419 (472)
T 4g1t_A 350 YEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKM----------KDKLQKIA 419 (472)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHH----------HHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHH----------HHHHHHHH
Confidence 88888888888887776543 233333 4578888888888888888876543322 34456677
Q ss_pred HHHHhcCCCchHHH-HHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHH
Q 002379 868 SKAIAFKPDLQMLH-LRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYN 918 (929)
Q Consensus 868 ~kal~~~p~~~~~~-~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~ 918 (929)
++++..+|+++..+ .+|.+|..+|++++|+++|++|++++|.+|.+...++
T Consensus 420 ~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 420 KMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 88888888886544 7799999999999999999999999999888877654
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.97 E-value=5.3e-28 Score=278.14 Aligned_cols=331 Identities=15% Similarity=0.083 Sum_probs=288.9
Q ss_pred HHHHHHHHHHHhcccC-CHhHHHHHHHHHHHhccHHHHHHHHHHHHhhcCCchhhhccccHHHHHHHHHHhhcccchHHH
Q 002379 531 IRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADC 609 (929)
Q Consensus 531 ~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~ 609 (929)
...+...+.+++..+| ++..+..+|..+...|++++|+..|+++++.+|++. .++..++.++...|++++|..
T Consensus 8 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~------~~~~~l~~~~~~~g~~~~A~~ 81 (450)
T 2y4t_A 8 SSGVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNY------IAYYRRATVFLAMGKSKAALP 81 (450)
T ss_dssp ---------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHHTTCHHHHHH
T ss_pred cccccccccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccH------HHHHHHHHHHHHCCCHHHHHH
Confidence 3445566777776676 677799999999999999999999999999999998 788889999999999999966
Q ss_pred HHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchH---HHHHHH------
Q 002379 610 WIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEH---ERLVYE------ 680 (929)
Q Consensus 610 ~l~l~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~---~~~~~l------ 680 (929)
.+ .++++.+|+++.++..+|.+|...|++++|+..|+++++.+|++. .++..+
T Consensus 82 ~~------------------~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 143 (450)
T 2y4t_A 82 DL------------------TKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEM 143 (450)
T ss_dssp HH------------------HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH
T ss_pred HH------------------HHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH
Confidence 66 999999999999999999999999999999999999999999988 776655
Q ss_pred ------HHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHH
Q 002379 681 ------GWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNL 754 (929)
Q Consensus 681 ------g~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~l~~~l~~~~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~l 754 (929)
|.++...|++++|+..|+++++..|++ ..++..+
T Consensus 144 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~----------------------------------------~~~~~~l 183 (450)
T 2y4t_A 144 QRLRSQALNAFGSGDYTAAIAFLDKILEVCVWD----------------------------------------AELRELR 183 (450)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC----------------------------------------HHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----------------------------------------hHHHHHH
Confidence 666999999999999999999988876 4568889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHH------------
Q 002379 755 GSIYVECGKLDQAENCYINALDI--KHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKR------------ 820 (929)
Q Consensus 755 g~~~~~~g~~~eA~~~~~~al~~--~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l------------ 820 (929)
|.++...|++++|+..|+++++. .++.++..+|.++...|++++|+..+++++...|++...+..+
T Consensus 184 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 263 (450)
T 2y4t_A 184 AECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIES 263 (450)
T ss_dssp HHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988 6778999999999999999999999999999999998876554
Q ss_pred h----hhCCHHHHHHHHHHHHhcCCCCcH----HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHH-HHHHHHHHcC
Q 002379 821 S----EYSDREMAKNDLNMATQLDPLRTY----PYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLH-LRAAFYESIG 891 (929)
Q Consensus 821 g----~~g~~~~A~~~~~~al~l~p~~~~----~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~-~la~~~~~~g 891 (929)
| ..|++++|+..|+++++.+|.++. .+..+|.++...|++++|+..++++++.+|++...+ .+|.++...|
T Consensus 264 ~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~ 343 (450)
T 2y4t_A 264 AEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEE 343 (450)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhc
Confidence 4 679999999999999999998854 788999999999999999999999999999886555 7899999999
Q ss_pred CHHHHHHHHHHHhccCCCCHHHHHHHHHHHhhhh
Q 002379 892 DLTSAIRDSQAALCLDPNHMETLDLYNRARDQAS 925 (929)
Q Consensus 892 ~~~~A~~~~~~al~l~P~~~~a~~~~~~l~~~~~ 925 (929)
++++|+..|+++++++|+++.++..++.+.....
T Consensus 344 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 377 (450)
T 2y4t_A 344 MYDEAIQDYETAQEHNENDQQIREGLEKAQRLLK 377 (450)
T ss_dssp CHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999998765543
No 11
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.7e-28 Score=287.01 Aligned_cols=396 Identities=13% Similarity=0.062 Sum_probs=324.5
Q ss_pred chhhhHHHHHHhhhh--HHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccC-CHhHHHHHHHHHHH
Q 002379 484 TGWMYQERSLYNLGR--EKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIA 560 (929)
Q Consensus 484 ~~~~~~~~~l~~~~~--~Ai~~~~kal~l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~ 560 (929)
..|...|..++..++ +|+..|+++++.+| ++.++..+|.++...|++++|+..++++++..| ++..+..+|.++..
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 85 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEG 85 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHH
Confidence 567788888888887 99999999999999 699999999999999999999999999999998 78889999999999
Q ss_pred hccHHHHHHHHHHHHhhcCCchhhhccccHHHHHHHHH--HhhcccchHHHHHHh----------------hhccccccc
Q 002379 561 ADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLN--HHVRSWSPADCWIKL----------------YDRWSSVDD 622 (929)
Q Consensus 561 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~ll~~~~--~~~~~~~~A~~~l~l----------------~~~~~~~~~ 622 (929)
.|++++|+..|++++...|.+..... ..+.... .......++...++. .........
T Consensus 86 ~g~~~~A~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (514)
T 2gw1_A 86 LGKFADAMFDLSVLSLNGDFNDASIE-----PMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPS 160 (514)
T ss_dssp TTCHHHHHHHHHHHHHSSSCCGGGTH-----HHHHHHHHHHHHHHHTTC---------------------------CCCC
T ss_pred HhhHHHHHHHHHHHHhcCCCccchHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCch
Confidence 99999999999999999987663321 1111111 111112211100000 000000000
Q ss_pred cccHHHHHHHHhc--------CCCChHHHHHHHHHHHH---hcCHHHHHHHHHHHHh-----c---------CCchHHHH
Q 002379 623 IGSLAVINQMLIN--------DPGKSFLRFRQSLLLLR---LNCQKAAMRCLRLARN-----H---------SSSEHERL 677 (929)
Q Consensus 623 ~~~l~~~~~al~~--------~p~~~~~~~~lg~~~~~---~g~~~~A~~~l~~al~-----~---------~p~~~~~~ 677 (929)
...+..+...... .|.++..++.+|..+.. .|++++|+..|+++++ . .|.++.++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (514)
T 2gw1_A 161 VTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISL 240 (514)
T ss_dssp HHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHH
T ss_pred hHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHH
Confidence 0001111111111 15558889999998887 8999999999999999 5 35667889
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHH
Q 002379 678 VYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSI 757 (929)
Q Consensus 678 ~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~l~~~l~~~~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~ 757 (929)
..+|.++...|++++|+..++++++.+|+ ..++..+|.+
T Consensus 241 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-----------------------------------------~~~~~~l~~~ 279 (514)
T 2gw1_A 241 EHTGIFKFLKNDPLGAHEDIKKAIELFPR-----------------------------------------VNSYIYMALI 279 (514)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHHHHHCCC-----------------------------------------HHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCcc-----------------------------------------HHHHHHHHHH
Confidence 99999999999999999999999988774 2347889999
Q ss_pred HHHcCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHh----hhCCHHHHHH
Q 002379 758 YVECGKLDQAENCYINALDI--KHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS----EYSDREMAKN 831 (929)
Q Consensus 758 ~~~~g~~~eA~~~~~~al~~--~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg----~~g~~~~A~~ 831 (929)
+...|++++|+..|+++++. .++.++..+|.++...|++++|+..++++++..|++..++..+| ..|++++|+.
T Consensus 280 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 359 (514)
T 2gw1_A 280 MADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCET 359 (514)
T ss_dssp HHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999999998 46789999999999999999999999999999999999999888 6799999999
Q ss_pred HHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCch-------HHHHHHHHHHH---cCCHHHHHHHHH
Q 002379 832 DLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQ-------MLHLRAAFYES---IGDLTSAIRDSQ 901 (929)
Q Consensus 832 ~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~-------~~~~la~~~~~---~g~~~~A~~~~~ 901 (929)
.++++++.+|.++.++..+|.++...|++++|+..|+++++..|+++ .++.+|.++.. .|++++|+..|+
T Consensus 360 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~ 439 (514)
T 2gw1_A 360 LFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLE 439 (514)
T ss_dssp HHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHH
T ss_pred HHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999988875 55588999999 999999999999
Q ss_pred HHhccCCCCHHHHHHHHHHHhhhhh
Q 002379 902 AALCLDPNHMETLDLYNRARDQASH 926 (929)
Q Consensus 902 ~al~l~P~~~~a~~~~~~l~~~~~~ 926 (929)
++++++|+++.++..++.+....++
T Consensus 440 ~a~~~~~~~~~~~~~la~~~~~~g~ 464 (514)
T 2gw1_A 440 KASKLDPRSEQAKIGLAQMKLQQED 464 (514)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHhCcccHHHHHHHHHHHHHhcC
Confidence 9999999999999999888765543
No 12
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.97 E-value=2.9e-27 Score=262.12 Aligned_cols=321 Identities=14% Similarity=0.129 Sum_probs=252.6
Q ss_pred chhhhHHHHHHhhhh--HHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccC-CHhHHHHHHHHHHH
Q 002379 484 TGWMYQERSLYNLGR--EKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIA 560 (929)
Q Consensus 484 ~~~~~~~~~l~~~~~--~Ai~~~~kal~l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~ 560 (929)
..|+..|..++..++ +|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++..| ++..+..+|.++..
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 83 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLK 83 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHH
Confidence 345556666665555 667777777777777777777777777777777777777777766666 55666666777777
Q ss_pred hccHHHHHHHHHHHHhhcC---CchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCC
Q 002379 561 ADDYESALRDTLALLALES---NYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDP 637 (929)
Q Consensus 561 ~g~~~~A~~~~~~al~~~p---~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~~p 637 (929)
.|++++|+..|+++++.+| ++. .++..++.+..
T Consensus 84 ~~~~~~A~~~~~~~~~~~~~~~~~~------~~~~~l~~~~~-------------------------------------- 119 (359)
T 3ieg_A 84 QGKLDEAEDDFKKVLKSNPSEQEEK------EAESQLVKADE-------------------------------------- 119 (359)
T ss_dssp HTCHHHHHHHHHHHHTSCCCHHHHH------HHHHHHHHHHH--------------------------------------
T ss_pred cCChHHHHHHHHHHHhcCCcccChH------HHHHHHHHHHH--------------------------------------
Confidence 7777777777777776666 444 22322222211
Q ss_pred CChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHHHH
Q 002379 638 GKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYIL 717 (929)
Q Consensus 638 ~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~l~~~l 717 (929)
...+..+|.++...|++++|+..++++++.+|.++.++..+|.++...|++++|+..++++++..|++
T Consensus 120 --~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---------- 187 (359)
T 3ieg_A 120 --MQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDN---------- 187 (359)
T ss_dssp --HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCC----------
T ss_pred --HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC----------
Confidence 11234568899999999999999999999999999999999999999999999999999999998877
Q ss_pred HhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcCC--CHHHH------------
Q 002379 718 ADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIK--HTRAH------------ 783 (929)
Q Consensus 718 ~~~~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~--~~~a~------------ 783 (929)
..++..+|.++...|++++|+..|+++++.. +..++
T Consensus 188 ------------------------------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 237 (359)
T 3ieg_A 188 ------------------------------TEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKL 237 (359)
T ss_dssp ------------------------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred ------------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHH
Confidence 4557889999999999999999999999883 33333
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHH----HHHHh----hhCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Q 002379 784 QGLARVYYLKNELKAAYDEMTKLLEKAQYSASA----FEKRS----EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLM 855 (929)
Q Consensus 784 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~----~~~lg----~~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~ 855 (929)
..+|.++...|++++|+..++++++..|++... +..+| ..|++++|+..++++++.+|.++.++..+|.++.
T Consensus 238 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (359)
T 3ieg_A 238 IESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYL 317 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 345888999999999999999999999998754 44455 6799999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHHhcCCCchHHH-HHHHHHHHc
Q 002379 856 DDQKEVEAVEELSKAIAFKPDLQMLH-LRAAFYESI 890 (929)
Q Consensus 856 ~~g~~~eA~~~l~kal~~~p~~~~~~-~la~~~~~~ 890 (929)
..|++++|+..|+++++++|+++... .++.++..+
T Consensus 318 ~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 318 IEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLL 353 (359)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 99999999999999999999987665 556665543
No 13
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.96 E-value=1.1e-27 Score=282.18 Aligned_cols=392 Identities=14% Similarity=0.084 Sum_probs=302.8
Q ss_pred chhhhHHHHHHhhhh--HHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccC-CHhHHHHHHHHHHH
Q 002379 484 TGWMYQERSLYNLGR--EKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIA 560 (929)
Q Consensus 484 ~~~~~~~~~l~~~~~--~Ai~~~~kal~l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~ 560 (929)
..|+..|..++..++ +|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++..| ++..+..+|.++..
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 105 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANES 105 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 345666777777776 999999999999999999999999999999999999999999999998 78889999999999
Q ss_pred hccHHHHHHHHHHHHhhcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhcc-------------------cccc
Q 002379 561 ADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRW-------------------SSVD 621 (929)
Q Consensus 561 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~-------------------~~~~ 621 (929)
.|++++|+..|+ ++..+|+...... ..+...+. ...|...++..... ...+
T Consensus 106 ~g~~~~A~~~~~-~~~~~~~~~~~~~--~~~~~~~~-------~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (537)
T 3fp2_A 106 LGNFTDAMFDLS-VLSLNGDFDGASI--EPMLERNL-------NKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFD 175 (537)
T ss_dssp HTCHHHHHHHHH-HHC-------------CHHHHHH-------HHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSC
T ss_pred cCCHHHHHHHHH-HHhcCCCCChHHH--HHHHHHHH-------HHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcC
Confidence 999999999996 8888888762211 11111111 12222222110000 0000
Q ss_pred ccccHHHHHHHHhcCCCChHHHHHHH--------HHHHHhcCHHHHHHHHHHHHhcCCchHH-------HHHHHHHHHHH
Q 002379 622 DIGSLAVINQMLINDPGKSFLRFRQS--------LLLLRLNCQKAAMRCLRLARNHSSSEHE-------RLVYEGWILYD 686 (929)
Q Consensus 622 ~~~~l~~~~~al~~~p~~~~~~~~lg--------~~~~~~g~~~~A~~~l~~al~~~p~~~~-------~~~~lg~~~~~ 686 (929)
....+..+.+....++........++ ......|++++|+..|+++++.+|+++. ++..+|.++..
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~ 255 (537)
T 3fp2_A 176 SHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFL 255 (537)
T ss_dssp HHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHh
Confidence 00000000111111222222223332 2333456899999999999999999755 57788899999
Q ss_pred cCCHHHHHHHHHHHHhhccchHHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHH
Q 002379 687 TGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQ 766 (929)
Q Consensus 687 ~g~~~eA~~~~~~al~~~p~~~~~~~l~~~l~~~~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~~~e 766 (929)
.|++++|+..|+++++.+|+. .++..+|.++...|++++
T Consensus 256 ~~~~~~A~~~~~~~~~~~~~~-----------------------------------------~~~~~l~~~~~~~~~~~~ 294 (537)
T 3fp2_A 256 KNNLLDAQVLLQESINLHPTP-----------------------------------------NSYIFLALTLADKENSQE 294 (537)
T ss_dssp TTCHHHHHHHHHHHHHHCCCH-----------------------------------------HHHHHHHHHTCCSSCCHH
T ss_pred cccHHHHHHHHHHHHhcCCCc-----------------------------------------hHHHHHHHHHHHhcCHHH
Confidence 999999999999999988753 347788999999999999
Q ss_pred HHHHHHHHHcC--CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHh----hhCCHHHHHHHHHHHHhcC
Q 002379 767 AENCYINALDI--KHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS----EYSDREMAKNDLNMATQLD 840 (929)
Q Consensus 767 A~~~~~~al~~--~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg----~~g~~~~A~~~~~~al~l~ 840 (929)
|+..|+++++. +.+.++..+|.++...|++++|+..++++++..|++..++..+| ..|++++|+..++++++.+
T Consensus 295 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 374 (537)
T 3fp2_A 295 FFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF 374 (537)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999988 56789999999999999999999999999999999999999988 6799999999999999999
Q ss_pred CCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCch-------HHHHHHHHHHHc----------CCHHHHHHHHHHH
Q 002379 841 PLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQ-------MLHLRAAFYESI----------GDLTSAIRDSQAA 903 (929)
Q Consensus 841 p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~-------~~~~la~~~~~~----------g~~~~A~~~~~~a 903 (929)
|.++.++..+|.++...|++++|+..|+++++..|++. .++.+|.++... |++++|+..|+++
T Consensus 375 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 454 (537)
T 3fp2_A 375 PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKA 454 (537)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999887653 234668999999 9999999999999
Q ss_pred hccCCCCHHHHHHHHHHHhhhhh
Q 002379 904 LCLDPNHMETLDLYNRARDQASH 926 (929)
Q Consensus 904 l~l~P~~~~a~~~~~~l~~~~~~ 926 (929)
++++|+++.++..++.+....++
T Consensus 455 ~~~~p~~~~~~~~l~~~~~~~g~ 477 (537)
T 3fp2_A 455 CELDPRSEQAKIGLAQLKLQMEK 477 (537)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHhCCCCHHHHHHHHHHHHHhcc
Confidence 99999999999999988766544
No 14
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.95 E-value=2.3e-26 Score=266.44 Aligned_cols=389 Identities=11% Similarity=0.025 Sum_probs=243.6
Q ss_pred HHHHhhhhhhhhcccchHHHHHHHHHhhcch------HHHHHHHHHHHhhHHHHhcccHHHHHHHHHHHHhcCccccHHH
Q 002379 383 LYYFLSQVAMEKDRVSNTTVMLLERLGECST------ERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGHIYSLAG 456 (929)
Q Consensus 383 l~~~l~~~~~~~~~~~~~~~~~Le~l~~~~~------~~~~~a~~~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~~~a~ 456 (929)
+|..++.+.... .+.+.++..+++..+..+ ..+..+..+.++|.+|...|+|++|+.+|++++++.+....
T Consensus 53 ~yn~Lg~~~~~~-G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~-- 129 (472)
T 4g1t_A 53 MCNLLAYLKHLK-GQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS-- 129 (472)
T ss_dssp HHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC--
T ss_pred HHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc--
Confidence 455566555443 356777777776655422 12345678899999999999999999999999887433221
Q ss_pred HHHHHHHhchHHHHHHHHHhhhccCCCchhhhHHHHHHhhhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHh--CCHHHH
Q 002379 457 LARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEE--GQIRAA 534 (929)
Q Consensus 457 la~~~~~~g~a~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Ai~~~~kal~l~P~~~~a~~~~a~~~~~~--g~~~~A 534 (929)
...+..+..+..+|.++... +++++|
T Consensus 130 ----------------------------------------------------~~~~~~~~~~~~~g~~~~~~~~~~y~~A 157 (472)
T 4g1t_A 130 ----------------------------------------------------PYRIESPELDCEEGWTRLKCGGNQNERA 157 (472)
T ss_dssp ----------------------------------------------------SSCCCCHHHHHHHHHHHHHHCTTHHHHH
T ss_pred ----------------------------------------------------ccchhhHHHHHHHHHHHHHHccccHHHH
Confidence 01122333444444444332 245555
Q ss_pred HHHHHHHhcccC-CHhHHHHHHHHHHH---hccHHHHHHHHHHHHhhcCCchhhhccccHHHHHHHHHH----hhcccch
Q 002379 535 ISEIDRIIVFKL-SVDCLELRAWLFIA---ADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNH----HVRSWSP 606 (929)
Q Consensus 535 ~~~~~~al~~~~-~~~~~~~~a~~~~~---~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~ll~~~~~----~~~~~~~ 606 (929)
+..|+++++++| +++.+..++.++.. .+++++|+..|+++++++|++. .++..++..+. ..+.+++
T Consensus 158 ~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~------~~~~~l~~~~~~~~~~~~~~~~ 231 (472)
T 4g1t_A 158 KVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQ------YLKVLLALKLHKMREEGEEEGE 231 (472)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCH------HHHHHHHHHHHHCC------CH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcch------HHHHHHHHHHHHHHhhhhHHHH
Confidence 555555555555 45555555544433 3455667777777777777777 44444554443 3345566
Q ss_pred HHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Q 002379 607 ADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYD 686 (929)
Q Consensus 607 A~~~l~l~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~ 686 (929)
|...+ ++++..+|..+.++..+|.+|...|++++|+..++++++.+|+++.++..+|.+|..
T Consensus 232 a~~~~------------------~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~ 293 (472)
T 4g1t_A 232 GEKLV------------------EEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRA 293 (472)
T ss_dssp HHHHH------------------HHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHH------------------HHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHH
Confidence 64444 788888888888888899999999999999999999999999988888888888765
Q ss_pred cCCHHHHHHHHHHHHhhccchHHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCc----hhHHHHHHHHHHHHcC
Q 002379 687 TGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLR----KGQALNNLGSIYVECG 762 (929)
Q Consensus 687 ~g~~~eA~~~~~~al~~~p~~~~~~~l~~~l~~~~~~~~~~~~a~~~~e~Al~~~~~al~----~~~a~~~lg~~~~~~g 762 (929)
.+....+..... ..........+++|+..+++++. ...++..+|.++...|
T Consensus 294 ~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~ 348 (472)
T 4g1t_A 294 KVFQVMNLRENG-------------------------MYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALAD 348 (472)
T ss_dssp HHHHHHHC-------------------------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTT
T ss_pred HHHHhhhHHHHH-------------------------HHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhc
Confidence 322111110000 00111111233333333333322 1466889999999999
Q ss_pred CHHHHHHHHHHHHcCCCH-----HHHHHHHHH-HHHhCCHHHHHHHHHHHHHHccCCHHHHHHHhhhCCHHHHHHHHHHH
Q 002379 763 KLDQAENCYINALDIKHT-----RAHQGLARV-YYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMA 836 (929)
Q Consensus 763 ~~~eA~~~~~~al~~~~~-----~a~~~la~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~g~~~~A~~~~~~a 836 (929)
++++|+.+|++++++.+. ..+..+|.+ +...|++++|+..|.+++++.|++....... ..+...++++
T Consensus 349 ~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~------~~l~~~~~~~ 422 (472)
T 4g1t_A 349 QYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMK------DKLQKIAKMR 422 (472)
T ss_dssp CHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHH------HHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHH------HHHHHHHHHH
Confidence 999999999999988432 245666654 4578999999999999999999987654332 5567788899
Q ss_pred HhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHH
Q 002379 837 TQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLH 881 (929)
Q Consensus 837 l~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~ 881 (929)
+..+|.++.++..+|.+|...|++++|++.|++|+++.|.++...
T Consensus 423 l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~ 467 (472)
T 4g1t_A 423 LSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSAS 467 (472)
T ss_dssp HHHCC-CTTHHHHHHHHHHHHHHCC--------------------
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHh
Confidence 999999999999999999999999999999999999998887544
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.95 E-value=3.9e-25 Score=242.21 Aligned_cols=295 Identities=13% Similarity=0.025 Sum_probs=243.7
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccC-CHhHHHHHHHHHHHhccHHHHHHHHHHHHhhcCCchh
Q 002379 505 NYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLALLALESNYMM 583 (929)
Q Consensus 505 ~kal~l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~ 583 (929)
...+...|+++..+..+|..++..|++++|+..|++++...| ++..+..++.++...|++++|+..++++++.+|++.
T Consensus 12 ~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~- 90 (330)
T 3hym_B 12 PESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNP- 90 (330)
T ss_dssp --------CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTST-
T ss_pred HHHHhhchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCH-
Confidence 345566788889999999999999999999999999998888 677788889999999999999999999999999998
Q ss_pred hhccccHHHHHHHHHHhhc-ccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHH
Q 002379 584 FHGRVSGDHLVKLLNHHVR-SWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRC 662 (929)
Q Consensus 584 ~~~~~~a~~ll~~~~~~~~-~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 662 (929)
.++..++.++...| ++++|...+ ++++..+|.++.++..+|.++...|++++|+..
T Consensus 91 -----~~~~~l~~~~~~~~~~~~~A~~~~------------------~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 147 (330)
T 3hym_B 91 -----VSWFAVGCYYLMVGHKNEHARRYL------------------SKATTLEKTYGPAWIAYGHSFAVESEHDQAMAA 147 (330)
T ss_dssp -----HHHHHHHHHHHHSCSCHHHHHHHH------------------HHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHH
T ss_pred -----HHHHHHHHHHHHhhhhHHHHHHHH------------------HHHHHhCCccHHHHHHHHHHHHHccCHHHHHHH
Confidence 78888999999999 899996666 999999999999999999999999999999999
Q ss_pred HHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchh
Q 002379 663 LRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPS 742 (929)
Q Consensus 663 l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~l~~~l~~~~~~~~~~~~a~~~~e~Al~~~~ 742 (929)
++++++..|++...+..+|.++...|++++|+..++++++.+|++
T Consensus 148 ~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~----------------------------------- 192 (330)
T 3hym_B 148 YFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPED----------------------------------- 192 (330)
T ss_dssp HHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC-----------------------------------
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCC-----------------------------------
Confidence 999999999999999999999999999999999999999999876
Q ss_pred ccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC-----------CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcc
Q 002379 743 DGLRKGQALNNLGSIYVECGKLDQAENCYINALDI-----------KHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQ 811 (929)
Q Consensus 743 ~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~-----------~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p 811 (929)
..++..+|.++...|++++|+..|+++++. ..+.++..+|.++...|++++|+..++++++..|
T Consensus 193 -----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 267 (330)
T 3hym_B 193 -----PFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIP 267 (330)
T ss_dssp -----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred -----hHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCc
Confidence 456888999999999999999999999885 1246889999999999999888888888877765
Q ss_pred CCHHHHHHHhhhCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHH-HHHHHH-HH
Q 002379 812 YSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLH-LRAAFY-ES 889 (929)
Q Consensus 812 ~~~~~~~~lg~~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~-~la~~~-~~ 889 (929)
++ +.++..+|.++...|++++|++.|+++++++|+++..+ .++.++ ..
T Consensus 268 ~~------------------------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 317 (330)
T 3hym_B 268 QN------------------------------ASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMY 317 (330)
T ss_dssp TC------------------------------SHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTT
T ss_pred cc------------------------------hHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHH
Confidence 54 44555556666666666666666666666666554433 445555 33
Q ss_pred cCCH
Q 002379 890 IGDL 893 (929)
Q Consensus 890 ~g~~ 893 (929)
.|+.
T Consensus 318 ~g~~ 321 (330)
T 3hym_B 318 IGDS 321 (330)
T ss_dssp TTC-
T ss_pred hCch
Confidence 4443
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.95 E-value=3.6e-25 Score=242.50 Aligned_cols=291 Identities=13% Similarity=0.050 Sum_probs=256.5
Q ss_pred CHhHHHHHHHHHHHhccHHHHHHHHHHHHhhcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccH
Q 002379 547 SVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSL 626 (929)
Q Consensus 547 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l 626 (929)
+++.+..+|..++..|++++|+..|+++++.+|.+. .++..++.++...|++++|...+
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~------~~~~~~~~~~~~~~~~~~A~~~~--------------- 79 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHA------SCLPVHIGTLVELNKANELFYLS--------------- 79 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT------TTHHHHHHHHHHHTCHHHHHHHH---------------
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCh------hhHHHHHHHHHHhhhHHHHHHHH---------------
Confidence 778899999999999999999999999999999988 67777888888889999986655
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHhc-CHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc
Q 002379 627 AVINQMLINDPGKSFLRFRQSLLLLRLN-CQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIER 705 (929)
Q Consensus 627 ~~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p 705 (929)
.++++.+|.++.++..+|.++...| ++++|+..|+++++.+|.++.++..+|.++...|++++|+..++++++..|
T Consensus 80 ---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 156 (330)
T 3hym_B 80 ---HKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMK 156 (330)
T ss_dssp ---HHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTT
T ss_pred ---HHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcc
Confidence 8999999999999999999999999 999999999999999999999999999999999999999999999999888
Q ss_pred chHHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC--CCHHHH
Q 002379 706 TFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI--KHTRAH 783 (929)
Q Consensus 706 ~~~~~~~l~~~l~~~~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~--~~~~a~ 783 (929)
+. ..++..+|.++...|++++|+..|+++++. .++.++
T Consensus 157 ~~----------------------------------------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 196 (330)
T 3hym_B 157 GC----------------------------------------HLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVM 196 (330)
T ss_dssp TC----------------------------------------SHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHH
T ss_pred cc----------------------------------------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHH
Confidence 65 345777999999999999999999999988 556789
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHhhhCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHH
Q 002379 784 QGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEA 863 (929)
Q Consensus 784 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA 863 (929)
..+|.++...|++++|+..++++++..|..... ...|..+.++..+|.++...|++++|
T Consensus 197 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~---------------------~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 197 HEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNE---------------------VTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCS---------------------CTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHhhhcccc---------------------ccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 999999999999999999999888876542110 01256778999999999999999999
Q ss_pred HHHHHHHHhcCCCchHHH-HHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHh
Q 002379 864 VEELSKAIAFKPDLQMLH-LRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNRARD 922 (929)
Q Consensus 864 ~~~l~kal~~~p~~~~~~-~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~l~~ 922 (929)
+..|+++++..|++...+ .+|.++..+|++++|+..|+++++++|+++.++..++.+..
T Consensus 256 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 315 (330)
T 3hym_B 256 LDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIE 315 (330)
T ss_dssp HHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHH
Confidence 999999999999886555 78999999999999999999999999999999999998653
No 17
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}
Probab=99.94 E-value=3.8e-27 Score=233.26 Aligned_cols=143 Identities=19% Similarity=0.262 Sum_probs=130.1
Q ss_pred cCCCCCCEEEEEcCeEEEeehhHHhccCHHHHHHhcCCCCcCCCCeeEecCCCCCHHHHHHHhhhHccCCCCCCChhHHH
Q 002379 213 SLEEDDSVTFCVRDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFCPGIVL 292 (929)
Q Consensus 213 ~~~~~~~v~~~v~~~~~~~hr~iLaa~S~~F~~mf~~~~~e~~~~~i~~~~~~~~~~~~~~~l~~~Yt~~~~~~~~~~~~ 292 (929)
.+....||+|+|+|++|+|||.||+++|+||++||.++|.|+....|+| +++++++|+.+|+|+|||+++ ++.+++.
T Consensus 30 ~~~~~~Dv~l~v~~~~~~~Hk~iL~~~S~~F~~~f~~~~~e~~~~~i~l--~~~~~~~f~~~l~~~Yt~~~~-~~~~~~~ 106 (172)
T 3htm_A 30 ENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEI--NDVEPEVFKEMMCFIYTGKAP-NLDKMAD 106 (172)
T ss_dssp HHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHSCCCGGGTTEEEE--CSSCHHHHHHHHHHHHHSCCT-TGGGTHH
T ss_pred hCCCCcceEEEECCEEEEeeHHHHHHcCHHHHHHHccCccccCCCeEEe--cCCCHHHHHHHHHHHhCCCCC-CcHHHHH
Confidence 3444555999999999999999999999999999999999999999999 999999999999999999999 9999999
Q ss_pred HHHHHhchhChHhHHHHHHHHHHhhcCChhhHHHHHHHHHHhChHHHHHHHHHHHHhchhhhcCccc
Q 002379 293 ELLSFANRFCCEEMKSACDAHLASLVGDIEDALILIDYGLEERATLLVASCLQVLLRELPSSLYNPK 359 (929)
Q Consensus 293 ~ll~~A~~~~~~~l~~~C~~~l~~~~~~~~n~~~~~~~a~~~~~~~L~~~c~~~i~~~~~~v~~~~~ 359 (929)
+|+.+|++|+++.|+..|+++|.+.++ ++||+.++.+|..|++++|++.|.+||.+||.+++++++
T Consensus 107 ~ll~~A~~~~~~~l~~~c~~~l~~~l~-~~n~~~~~~~A~~~~~~~L~~~~~~~i~~~~~~v~~s~~ 172 (172)
T 3htm_A 107 DLLAAADKYALERLKVMCEDALCSNLS-VENAAEILILADLHSADQLKTQAVDFINYHATDVLETSG 172 (172)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCC-TTTHHHHHHHHHHTTCHHHHHHHHHHHHHTC--------
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHcCCC
Confidence 999999999999999999999999999 999999999999999999999999999999999988763
No 18
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B
Probab=99.94 E-value=4.3e-27 Score=248.44 Aligned_cols=154 Identities=14% Similarity=0.212 Sum_probs=133.6
Q ss_pred chhhhhccCCCCCC-EEEEEcCeEEEeehhHHhccCHHHHHHhcCCCC--cCCCCeeEecCCCCCHHHHHHHhhhHccCC
Q 002379 206 VEKFVCLSLEEDDS-VTFCVRDKEISFVRNKIASLSSPFKAMLYGGFV--ESKRKTIDFSHDGVSVEGLRAVEVYTRTSR 282 (929)
Q Consensus 206 ~~~~~~~~~~~~~~-v~~~v~~~~~~~hr~iLaa~S~~F~~mf~~~~~--e~~~~~i~~~~~~~~~~~~~~~l~~~Yt~~ 282 (929)
......+..++..+ |+|+|+|++|+|||.|||++|+||++||+++|. |+....|+| +++++.+|+.+++|+|||+
T Consensus 19 ~~~l~~l~~~~~~~Dv~l~v~~~~f~~Hr~vLaa~S~yF~~mf~~~~~~~e~~~~~i~l--~~v~~~~f~~ll~~~Yt~~ 96 (256)
T 3hve_A 19 LRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIEL--EGISVMVMREILDYIFSGQ 96 (256)
T ss_dssp HHHHHTCCC--CCCCEEEEETTEEEEECHHHHHTTCHHHHHTC-----------CEEEC--SSCCHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHhcCCCcceEEEECCEEEechHHHHHHcCHHHHHHhCCCCCcccCCCCeEEe--CCCCHHHHHHHHhhccCCC
Confidence 33444455555444 999999999999999999999999999999998 677789999 9999999999999999999
Q ss_pred CCCCChhHHHHHHHHhchhChHhHHHHHHHHHHhhcCChhhHHHHHHHHHHhChHHHHHHHHHHHHhchhhhcCccchhh
Q 002379 283 VDLFCPGIVLELLSFANRFCCEEMKSACDAHLASLVGDIEDALILIDYGLEERATLLVASCLQVLLRELPSSLYNPKVMK 362 (929)
Q Consensus 283 ~~~~~~~~~~~ll~~A~~~~~~~l~~~C~~~l~~~~~~~~n~~~~~~~a~~~~~~~L~~~c~~~i~~~~~~v~~~~~f~~ 362 (929)
++ ++.+++.+++.+|++|+++.|+..|+++|.+.++ ++||+.++.+|..|++++|.+.|.+||.+||..+..+++|.+
T Consensus 97 ~~-i~~~~v~~ll~~A~~l~i~~l~~~c~~~L~~~l~-~~n~~~i~~~A~~~~~~~L~~~~~~~i~~~f~~v~~~~~f~~ 174 (256)
T 3hve_A 97 IR-LNEDTIQDVVQAADLLLLTDLKTLCCEFLEGCIA-AENCIGIRDFALHYCLHHVHYLATEYLETHFRDVSSTEEFLE 174 (256)
T ss_dssp CC-CC-CCHHHHHHHHHHHTCHHHHHHHHHHHHHTCC-SSTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTTCHHHHS
T ss_pred Cc-ccHhHHHHHHHHHHHHChHHHHHHHHHHHHhhCC-HhhHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhCCcchhc
Confidence 99 9999999999999999999999999999999999 999999999999999999999999999999999999999988
Q ss_pred h
Q 002379 363 I 363 (929)
Q Consensus 363 L 363 (929)
|
T Consensus 175 L 175 (256)
T 3hve_A 175 L 175 (256)
T ss_dssp S
T ss_pred C
Confidence 7
No 19
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.94 E-value=1.3e-25 Score=250.53 Aligned_cols=325 Identities=13% Similarity=0.045 Sum_probs=250.5
Q ss_pred HhCCHHHHHHHHHHHhcccCCHhHHHHHHHHHHHhccHHHHHH-HHHHHHhhcCCchhhhccccHHHHHHHHHHhhcccc
Q 002379 527 EEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALR-DTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWS 605 (929)
Q Consensus 527 ~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~g~~~~A~~-~~~~al~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~ 605 (929)
..+.++.+...++.+.... +.++...|+|++|+. .|++++...|+++.. ....+..+|..+...|+++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~a~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~ 81 (368)
T 1fch_A 13 DVDFWDKLQAELEEMAKRD---------AEAHPWLSDYDDLTSATYDKGYQFEEENPLR--DHPQPFEEGLRRLQEGDLP 81 (368)
T ss_dssp ------------------------------------------CHHHHCCCCCCSSCTTT--TCSSHHHHHHHHHHTTCHH
T ss_pred CcccHHHHHHHHHHHHcCC---------chhhHHHHHHHHHHhhhhhHHHhcCCCCccc--chHHHHHHHHHHHHCCCHH
Confidence 4445555555555554333 224556789999999 999999988887622 1256778899999999999
Q ss_pred hHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Q 002379 606 PADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILY 685 (929)
Q Consensus 606 ~A~~~l~l~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~ 685 (929)
+|...+ .++++.+|.++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++.
T Consensus 82 ~A~~~~------------------~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~ 143 (368)
T 1fch_A 82 NAVLLF------------------EAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFT 143 (368)
T ss_dssp HHHHHH------------------HHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHH------------------HHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 996655 99999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhhccch-HHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCH
Q 002379 686 DTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKL 764 (929)
Q Consensus 686 ~~g~~~eA~~~~~~al~~~p~~-~~~~~l~~~l~~~~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~~ 764 (929)
..|++++|+..+++++...|+. ..+...+.... .......+..+|.++ ..|++
T Consensus 144 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~-~~~~~ 197 (368)
T 1fch_A 144 NESLQRQACEILRDWLRYTPAYAHLVTPAEEGAG-------------------------GAGLGPSKRILGSLL-SDSLF 197 (368)
T ss_dssp HTTCHHHHHHHHHHHHHTSTTTGGGCC----------------------------------------CTTHHHH-HHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhh-------------------------hhcccHHHHHHHHHh-hcccH
Confidence 9999999999999999999987 32222111100 011123344567666 89999
Q ss_pred HHHHHHHHHHHcCC----CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHh----hhCCHHHHHHHHHHH
Q 002379 765 DQAENCYINALDIK----HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS----EYSDREMAKNDLNMA 836 (929)
Q Consensus 765 ~eA~~~~~~al~~~----~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg----~~g~~~~A~~~~~~a 836 (929)
++|+..|+++++.. .+.++..+|.++...|++++|+..+++++...|+++.++..+| ..|++++|+..|+++
T Consensus 198 ~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 277 (368)
T 1fch_A 198 LEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRA 277 (368)
T ss_dssp HHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999999983 4689999999999999999999999999999999999999998 679999999999999
Q ss_pred HhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-----------h-HHHHHHHHHHHcCCHHHHHHHHHHHh
Q 002379 837 TQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDL-----------Q-MLHLRAAFYESIGDLTSAIRDSQAAL 904 (929)
Q Consensus 837 l~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~-----------~-~~~~la~~~~~~g~~~~A~~~~~~al 904 (929)
++++|.++.++..+|.++...|++++|+..|++++++.|++ . .+..+|.++..+|++++|...+++++
T Consensus 278 l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 278 LELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred HHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence 99999999999999999999999999999999999998877 4 44578999999999999999998877
Q ss_pred cc
Q 002379 905 CL 906 (929)
Q Consensus 905 ~l 906 (929)
+.
T Consensus 358 ~~ 359 (368)
T 1fch_A 358 ST 359 (368)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 20
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=99.94 E-value=1e-26 Score=253.40 Aligned_cols=143 Identities=19% Similarity=0.262 Sum_probs=124.8
Q ss_pred cCCCCCCEEEEEcCeEEEeehhHHhccCHHHHHHhcCCCCcCCCCeeEecCCCCCHHHHHHHhhhHccCCCCCCChhHHH
Q 002379 213 SLEEDDSVTFCVRDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFCPGIVL 292 (929)
Q Consensus 213 ~~~~~~~v~~~v~~~~~~~hr~iLaa~S~~F~~mf~~~~~e~~~~~i~~~~~~~~~~~~~~~l~~~Yt~~~~~~~~~~~~ 292 (929)
......||+|+|+|++|+|||.|||++|+||++||.++|.|+...+|+| +++++++|+.+|+|+|||+++ ++.+++.
T Consensus 170 ~~~~~~Dv~l~v~~~~f~~Hk~vLaa~S~~F~~~f~~~~~e~~~~~i~l--~~~~~~~f~~~L~~iYt~~~~-~~~~~~~ 246 (312)
T 3hqi_A 170 ENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEI--NDVEPEVFKEMMCFIYTGKAP-NLDKMAD 246 (312)
T ss_dssp HTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHTTC-----CCSEEEE--CSSCHHHHHHHHHHHHHSCCT-THHHHHH
T ss_pred hCCCCCceEEEECCEEEeHHHHHHHHcCHHHHHHhccCccccCCceEEe--cCCCHHHHHHHHHhhcCCCCC-ChHHHHH
Confidence 3344455999999999999999999999999999999999999999999 999999999999999999999 8889999
Q ss_pred HHHHHhchhChHhHHHHHHHHHHhhcCChhhHHHHHHHHHHhChHHHHHHHHHHHHhchhhhcCccc
Q 002379 293 ELLSFANRFCCEEMKSACDAHLASLVGDIEDALILIDYGLEERATLLVASCLQVLLRELPSSLYNPK 359 (929)
Q Consensus 293 ~ll~~A~~~~~~~l~~~C~~~l~~~~~~~~n~~~~~~~a~~~~~~~L~~~c~~~i~~~~~~v~~~~~ 359 (929)
+||.+|++|++++|+..|+++|.+.++ ++||+.++.+|+.|++..|++.|++||.+||.+++++++
T Consensus 247 ~ll~~A~~~~~~~l~~~c~~~l~~~~~-~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~~~~v~~s~g 312 (312)
T 3hqi_A 247 DLLAAADKYALERLKVMCEDALCSNLS-VENAAEILILADLHSADQLKTQAVDFINYHATDVLETSG 312 (312)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCC-TTTHHHHHHHHHHTTCHHHHHHHHHHHHHTC--------
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHccCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhCCC
Confidence 999999999999999999999999999 999999999999999999999999999999999988763
No 21
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.94 E-value=1.1e-22 Score=237.08 Aligned_cols=375 Identities=12% Similarity=-0.034 Sum_probs=299.2
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHH----hCCHHHHHHHHHHHhcccCCHhHHHHHHHHHHH----hccHHHHHHHHH
Q 002379 501 IVDLNYASELDPTLSFPYKYRAVAKME----EGQIRAAISEIDRIIVFKLSVDCLELRAWLFIA----ADDYESALRDTL 572 (929)
Q Consensus 501 i~~~~kal~l~P~~~~a~~~~a~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~----~g~~~~A~~~~~ 572 (929)
+..+.++.+ +.++.+++.+|..|.. .+++++|+..|+++.+. .++..++.+|.+|.. .+++++|+..|+
T Consensus 27 ~~~~~~~a~--~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~ 103 (490)
T 2xm6_A 27 LEQLKQKAE--SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ-GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYK 103 (490)
T ss_dssp HHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHH--CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 444554443 6778888999998888 88999999999998865 367888888999888 889999999999
Q ss_pred HHHhhcCCchhhhccccHHHHHHHHHHh----hcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHH
Q 002379 573 ALLALESNYMMFHGRVSGDHLVKLLNHH----VRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSL 648 (929)
Q Consensus 573 ~al~~~p~~~~~~~~~~a~~ll~~~~~~----~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~lg~ 648 (929)
++.+. +++ .+...+|.++.. .+++++|..++ +++.+. +++.+++.+|.
T Consensus 104 ~a~~~--~~~------~a~~~Lg~~y~~g~g~~~~~~~A~~~~------------------~~a~~~--~~~~a~~~Lg~ 155 (490)
T 2xm6_A 104 KAALK--GLP------QAQQNLGVMYHEGNGVKVDKAESVKWF------------------RLAAEQ--GRDSGQQSMGD 155 (490)
T ss_dssp HHHHT--TCH------HHHHHHHHHHHHTSSSCCCHHHHHHHH------------------HHHHHT--TCHHHHHHHHH
T ss_pred HHHHC--CCH------HHHHHHHHHHHcCCCCCCCHHHHHHHH------------------HHHHHC--CCHHHHHHHHH
Confidence 98764 455 667778888877 77888886666 776654 57888899999
Q ss_pred HHHH----hcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Q 002379 649 LLLR----LNCQKAAMRCLRLARNHSSSEHERLVYEGWILYD----TGHREEALSRAEKSISIERTFEAFFLKAYILADT 720 (929)
Q Consensus 649 ~~~~----~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~----~g~~~eA~~~~~~al~~~p~~~~~~~l~~~l~~~ 720 (929)
+|.. .+++++|+..|+++.+. .++.+++.+|.+|.. .+++++|+..|+++++..+ ..+++.++..+...
T Consensus 156 ~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~-~~a~~~lg~~y~~g 232 (490)
T 2xm6_A 156 AYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSGD-ELGQLHLADMYYFG 232 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHT
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHcC
Confidence 9887 78899999999998876 468888999999988 8899999999999887532 26777888877753
Q ss_pred CCCCCChHHHHHHHHHHhhchhccCc--hhHHHHHHHHHHHH----cCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh-
Q 002379 721 NLDPESSTYVIQLLEEALRCPSDGLR--KGQALNNLGSIYVE----CGKLDQAENCYINALDIKHTRAHQGLARVYYLK- 793 (929)
Q Consensus 721 ~~~~~~~~~a~~~~e~Al~~~~~al~--~~~a~~~lg~~~~~----~g~~~eA~~~~~~al~~~~~~a~~~la~~~~~~- 793 (929)
.-..++ +++|+..++++.. ...+++.+|.+|.. .+++++|+.+|+++.+.+++.+++.+|.+|...
T Consensus 233 ~g~~~~-------~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~ 305 (490)
T 2xm6_A 233 IGVTQD-------YTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGA 305 (490)
T ss_dssp SSSCCC-------HHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCB
T ss_pred CCCCCC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCC
Confidence 222333 4444444444433 45788999999998 899999999999999999999999999999988
Q ss_pred ----CCHHHHHHHHHHHHHHccCCHHHHHHHhh----hC---CHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHh----cC
Q 002379 794 ----NELKAAYDEMTKLLEKAQYSASAFEKRSE----YS---DREMAKNDLNMATQLDPLRTYPYRYRAAVLMD----DQ 858 (929)
Q Consensus 794 ----g~~~~A~~~~~~al~~~p~~~~~~~~lg~----~g---~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~----~g 858 (929)
+++++|+..|+++++. .++.++..+|. .| ++++|+.+|+++.+. .++.+++.+|.+|.. .+
T Consensus 306 ~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~ 381 (490)
T 2xm6_A 306 EGVAKNREQAISWYTKSAEQ--GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKK 381 (490)
T ss_dssp TTBCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCC
T ss_pred CCCcCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCC
Confidence 8999999999999876 46677777772 13 789999999999987 578999999999998 89
Q ss_pred CHHHHHHHHHHHHhcCCCchHHHHHHHHHHH----cCCHHHHHHHHHHHhccCCC---CHHHHHHHHHHH
Q 002379 859 KEVEAVEELSKAIAFKPDLQMLHLRAAFYES----IGDLTSAIRDSQAALCLDPN---HMETLDLYNRAR 921 (929)
Q Consensus 859 ~~~eA~~~l~kal~~~p~~~~~~~la~~~~~----~g~~~~A~~~~~~al~l~P~---~~~a~~~~~~l~ 921 (929)
++++|+.+|+++++.. +...++.+|.+|.. .+|+++|+.+|+++++.+|+ ++.+...++.+.
T Consensus 382 ~~~~A~~~~~~A~~~~-~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~ 450 (490)
T 2xm6_A 382 DEQQAAIWMRKAAEQG-LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLT 450 (490)
T ss_dssp CHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSC
T ss_pred CHHHHHHHHHHHHhCC-CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcC
Confidence 9999999999998864 34455688999998 89999999999999999954 777777766543
No 22
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.93 E-value=7.2e-23 Score=238.60 Aligned_cols=389 Identities=13% Similarity=0.036 Sum_probs=293.6
Q ss_pred HHHHHHhhHHHHh----cccHHHHHHHHHHHHhcCccccHHHHHHHHHHhchHHHHHHHHHhhhccCCCchhhhHHHHHH
Q 002379 419 MLALHQLGCVMFE----REEYKDACYYFEAAADAGHIYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLY 494 (929)
Q Consensus 419 a~~~~~lG~~~~~----~g~y~~A~~~f~~al~~~~~~~~a~la~~~~~~g~a~~a~~~~~~~~~~~~~~~~~~~~~~l~ 494 (929)
+.+++.+|..|+. .+++++|+.+|+++++.+.......++..|.. |. -.+
T Consensus 39 ~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~-g~----------g~~--------------- 92 (490)
T 2xm6_A 39 AKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMN-GE----------GVP--------------- 92 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TS----------SSC---------------
T ss_pred HHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHc-CC----------CCC---------------
Confidence 4678899999998 89999999999999886432222222222221 00 000
Q ss_pred hhhhHHHHHHHHHHhcCCCChHHHHHHHHHHHH----hCCHHHHHHHHHHHhcccCCHhHHHHHHHHHHH----hccHHH
Q 002379 495 NLGREKIVDLNYASELDPTLSFPYKYRAVAKME----EGQIRAAISEIDRIIVFKLSVDCLELRAWLFIA----ADDYES 566 (929)
Q Consensus 495 ~~~~~Ai~~~~kal~l~P~~~~a~~~~a~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~----~g~~~~ 566 (929)
.+.++|+..|+++.+. .++.+++.+|.+|.. .+++++|+..|+++.+.. ++..+..+|.+|.. .+++++
T Consensus 93 ~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-~~~a~~~Lg~~y~~g~g~~~d~~~ 169 (490)
T 2xm6_A 93 QDYAQAVIWYKKAALK--GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG-RDSGQQSMGDAYFEGDGVTRDYVM 169 (490)
T ss_dssp CCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred CCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHcCCCCCCCHHH
Confidence 1334788888888765 578888899999888 789999999999987543 67888888988887 788999
Q ss_pred HHHHHHHHHhhcCCchhhhccccHHHHHHHHHHh----hcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHH
Q 002379 567 ALRDTLALLALESNYMMFHGRVSGDHLVKLLNHH----VRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFL 642 (929)
Q Consensus 567 A~~~~~~al~~~p~~~~~~~~~~a~~ll~~~~~~----~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~~p~~~~~ 642 (929)
|+..|+++++. +++ .+...+|.++.. .+++++|..++ .++++. .++.+
T Consensus 170 A~~~~~~a~~~--~~~------~a~~~Lg~~y~~g~g~~~~~~~A~~~~------------------~~a~~~--~~~~a 221 (490)
T 2xm6_A 170 AREWYSKAAEQ--GNV------WSCNQLGYMYSRGLGVERNDAISAQWY------------------RKSATS--GDELG 221 (490)
T ss_dssp HHHHHHHHHHT--TCH------HHHHHHHHHHHHTSSSCCCHHHHHHHH------------------HHHHHT--TCHHH
T ss_pred HHHHHHHHHHC--CCH------HHHHHHHHHHhcCCCCCcCHHHHHHHH------------------HHHHHC--CCHHH
Confidence 99999988875 344 667778888876 67777776666 666654 46778
Q ss_pred HHHHHHHHHH----hcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhccchHHHHHHH
Q 002379 643 RFRQSLLLLR----LNCQKAAMRCLRLARNHSSSEHERLVYEGWILYD----TGHREEALSRAEKSISIERTFEAFFLKA 714 (929)
Q Consensus 643 ~~~lg~~~~~----~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~----~g~~~eA~~~~~~al~~~p~~~~~~~l~ 714 (929)
++.+|.+|.. .+++++|+..|+++.+. .++.+++.+|.+|.. .+++++|+..|+++.+...
T Consensus 222 ~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~--------- 290 (490)
T 2xm6_A 222 QLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ--GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGN--------- 290 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTC---------
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCC---------
Confidence 8888888886 77888888888888765 346778888888887 7888888888888876421
Q ss_pred HHHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHc-----CCHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 002379 715 YILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVEC-----GKLDQAENCYINALDIKHTRAHQGLARV 789 (929)
Q Consensus 715 ~~l~~~~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~-----g~~~eA~~~~~~al~~~~~~a~~~la~~ 789 (929)
..+++.+|.+|... +++++|+.+|+++.+.+++.+++.+|.+
T Consensus 291 ---------------------------------~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~ 337 (490)
T 2xm6_A 291 ---------------------------------SDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGDATAQANLGAI 337 (490)
T ss_dssp ---------------------------------HHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ---------------------------------HHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 34567778888777 8888999999988888888888889988
Q ss_pred HHHhC---CHHHHHHHHHHHHHHccCCHHHHHHHh----h----hCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHh--
Q 002379 790 YYLKN---ELKAAYDEMTKLLEKAQYSASAFEKRS----E----YSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMD-- 856 (929)
Q Consensus 790 ~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~lg----~----~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~-- 856 (929)
|...| ++++|+..|+++++. .++.++..+| . .+++++|+.+|+++.+.. ++.++..+|.+|..
T Consensus 338 y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~ 413 (490)
T 2xm6_A 338 YFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGL 413 (490)
T ss_dssp HHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTS
T ss_pred HHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCC
Confidence 88766 788888888888876 5677777777 2 478899999999988854 68899999999998
Q ss_pred --cCCHHHHHHHHHHHHhcCCC---chHH-HHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHH
Q 002379 857 --DQKEVEAVEELSKAIAFKPD---LQML-HLRAAFYESIGDLTSAIRDSQAALCLDPNHMETL 914 (929)
Q Consensus 857 --~g~~~eA~~~l~kal~~~p~---~~~~-~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~ 914 (929)
.+++++|+.+|+++++..|+ ++.. ..+|.++.. +.+.|.+..++.++..|++..+.
T Consensus 414 g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~--~~~~a~~~a~~~~~~~~~~~~~~ 475 (490)
T 2xm6_A 414 GVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK--QLQQAELLSQQYIEKYAPEAWAR 475 (490)
T ss_dssp SSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH--HHHHHHHHHHHHHHHHCHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999865 4433 355665553 44556656666666666555443
No 23
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A
Probab=99.93 E-value=1.2e-26 Score=248.16 Aligned_cols=153 Identities=19% Similarity=0.298 Sum_probs=134.2
Q ss_pred hhhhhccCCCC-CCEEEEEc---CeEEEeehhHHhccCHHHHHHhcCCCCcCCCCeeEecCC------CCCHHHHHHHhh
Q 002379 207 EKFVCLSLEED-DSVTFCVR---DKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHD------GVSVEGLRAVEV 276 (929)
Q Consensus 207 ~~~~~~~~~~~-~~v~~~v~---~~~~~~hr~iLaa~S~~F~~mf~~~~~e~~~~~i~~~~~------~~~~~~~~~~l~ 276 (929)
.....+..++. .||+|+|+ |++|+|||.|||++|+||++||+++|+|+....|+| + ++++.+|+.+++
T Consensus 21 ~~l~~l~~~~~~~Dv~l~v~~~~~~~f~~Hr~vLaa~S~yF~~mf~~~~~e~~~~~i~l--~~~~~~~~v~~~~f~~ll~ 98 (279)
T 3i3n_A 21 WRQNEQRRQGLFCDITLCFGGAGGREFRAHRSVLAAATEYFTPLLSGQFSESRSGRVEM--RKWSSEPGPEPDTVEAVIE 98 (279)
T ss_dssp HHHHHHHHHTTTCCEEEECC----CEEEECHHHHHHHCTTSGGGCCC--------EEEC--CCCSSTTCSCHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCeEEEEcCCCCeEEehHHHHHHHcCHHHHHHhcCCCccccCCeEEe--ccccccCCCCHHHHHHHHH
Confidence 33444444444 44999998 999999999999999999999999999999999999 6 999999999999
Q ss_pred hHccCCCCCCChhHHHHHHHHhchhChHhHHHHHHHHHHhhcCChhhHHHHHHHHHHhChHHHHHHHHHHHHhchhhhcC
Q 002379 277 YTRTSRVDLFCPGIVLELLSFANRFCCEEMKSACDAHLASLVGDIEDALILIDYGLEERATLLVASCLQVLLRELPSSLY 356 (929)
Q Consensus 277 ~~Yt~~~~~~~~~~~~~ll~~A~~~~~~~l~~~C~~~l~~~~~~~~n~~~~~~~a~~~~~~~L~~~c~~~i~~~~~~v~~ 356 (929)
|+|||+++ ++.+++.+|+.+|++|+++.|+..|+++|.+.++ ++||+.++.+|..|+++.|.+.|.+||.+||.+++.
T Consensus 99 ~~Ytg~~~-i~~~~v~~ll~~A~~l~i~~L~~~c~~~L~~~l~-~~n~~~i~~~A~~~~~~~L~~~~~~~i~~~f~~v~~ 176 (279)
T 3i3n_A 99 YMYTGRIR-VSTGSVHEVLELADRFLLIRLKEFCGEFLKKKLH-LSNCVAIHSLAHMYTLSQLALKAADMIRRNFHKVIQ 176 (279)
T ss_dssp HHHHSEEE-EETTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-TTTHHHHHHHHHHTTCHHHHHHHHHHHHHTHHHHTT
T ss_pred hhCcCCcc-cCHHHHHHHHHHHHHHCcHHHHHHHHHHHHHcCC-cchHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhc
Confidence 99999999 9999999999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred ccchhhh
Q 002379 357 NPKVMKI 363 (929)
Q Consensus 357 ~~~f~~L 363 (929)
+++|.+|
T Consensus 177 ~~~f~~L 183 (279)
T 3i3n_A 177 DEEFYTL 183 (279)
T ss_dssp SSGGGGS
T ss_pred CcChhcC
Confidence 9999887
No 24
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.93 E-value=1e-24 Score=243.30 Aligned_cols=287 Identities=12% Similarity=0.005 Sum_probs=244.9
Q ss_pred HHHHhCCHHHHHH-HHHHHhcccC-C----HhHHHHHHHHHHHhccHHHHHHHHHHHHhhcCCchhhhccccHHHHHHHH
Q 002379 524 AKMEEGQIRAAIS-EIDRIIVFKL-S----VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLL 597 (929)
Q Consensus 524 ~~~~~g~~~~A~~-~~~~al~~~~-~----~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~ll~~~ 597 (929)
++...|+|++|+. .|++++.+.+ + ...++.+|.++...|++++|+..|+++++.+|++. .++..+|.+
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~l~~~ 107 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHM------EAWQYLGTT 107 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCH------HHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHH
Confidence 4556689999999 9999988777 3 34588899999999999999999999999999988 778889999
Q ss_pred HHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHH
Q 002379 598 NHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERL 677 (929)
Q Consensus 598 ~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~ 677 (929)
+...|++++|...+ .++++.+|+++.++..+|.++...|++++|+..++++++..|.+...+
T Consensus 108 ~~~~g~~~~A~~~~------------------~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 169 (368)
T 1fch_A 108 QAENEQELLAISAL------------------RRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLV 169 (368)
T ss_dssp HHHTTCHHHHHHHH------------------HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGC
T ss_pred HHHCcCHHHHHHHH------------------HHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHH
Confidence 99999999996655 999999999999999999999999999999999999999999887766
Q ss_pred H----------------HHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhch
Q 002379 678 V----------------YEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCP 741 (929)
Q Consensus 678 ~----------------~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~l~~~l~~~~~~~~~~~~a~~~~e~Al~~~ 741 (929)
. .+|.++ ..|++++|+..|+++++.+|+.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~---------------------------------- 214 (368)
T 1fch_A 170 TPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTS---------------------------------- 214 (368)
T ss_dssp C---------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTS----------------------------------
T ss_pred HHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCc----------------------------------
Confidence 4 466666 9999999999999999998873
Q ss_pred hccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHH
Q 002379 742 SDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI--KHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEK 819 (929)
Q Consensus 742 ~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~--~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 819 (929)
....++..+|.++...|++++|+..|+++++. +.+.++..+|.++...|++++|+..++++++..|++..++..
T Consensus 215 ----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 290 (368)
T 1fch_A 215 ----IDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYN 290 (368)
T ss_dssp ----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred ----ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 00455788999999999999999999999988 456899999999999999999999999999999999999998
Q ss_pred Hh----hhCCHHHHHHHHHHHHhcCCCC-----------cHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 002379 820 RS----EYSDREMAKNDLNMATQLDPLR-----------TYPYRYRAAVLMDDQKEVEAVEELSKAIAF 873 (929)
Q Consensus 820 lg----~~g~~~~A~~~~~~al~l~p~~-----------~~~~~~la~~~~~~g~~~eA~~~l~kal~~ 873 (929)
+| ..|++++|+..|++++++.|.+ ..+|..+|.++...|++++|...++++++.
T Consensus 291 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 359 (368)
T 1fch_A 291 LGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLST 359 (368)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHH
Confidence 88 6799999999999999998877 899999999999999999999998877653
No 25
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.92 E-value=2.5e-24 Score=240.41 Aligned_cols=253 Identities=15% Similarity=0.047 Sum_probs=231.8
Q ss_pred HHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhccchHH
Q 002379 631 QMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGH-REEALSRAEKSISIERTFEA 709 (929)
Q Consensus 631 ~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~-~~eA~~~~~~al~~~p~~~~ 709 (929)
.++..+|+++.++..+|.++...|++++|+..|+++++++|++..+|+.+|.++...|+ +++|+..|+++++++|++
T Consensus 88 ~ai~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~-- 165 (382)
T 2h6f_A 88 VQIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKN-- 165 (382)
T ss_dssp SEECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC--
T ss_pred hhhhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCC--
Confidence 35677899999999999999999999999999999999999999999999999999997 999999999999999988
Q ss_pred HHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC--CCHHHHHHHH
Q 002379 710 FFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI--KHTRAHQGLA 787 (929)
Q Consensus 710 ~~~l~~~l~~~~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~--~~~~a~~~la 787 (929)
..+|+++|.++...|++++|+..|++++++ ++..+|+++|
T Consensus 166 --------------------------------------~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg 207 (382)
T 2h6f_A 166 --------------------------------------YQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQ 207 (382)
T ss_dssp --------------------------------------HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred --------------------------------------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHH
Confidence 567889999999999999999999999999 5678999999
Q ss_pred HHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHh----h-hCCHHHH-----HHHHHHHHhcCCCCcHHHHHHHHHHHhc
Q 002379 788 RVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS----E-YSDREMA-----KNDLNMATQLDPLRTYPYRYRAAVLMDD 857 (929)
Q Consensus 788 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg----~-~g~~~~A-----~~~~~~al~l~p~~~~~~~~la~~~~~~ 857 (929)
.++...|++++|+..|+++++.+|++..+|..+| . .|..++| +..|++++.++|++..+|+++|.++...
T Consensus 208 ~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~ 287 (382)
T 2h6f_A 208 WVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDR 287 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTT
T ss_pred HHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHcc
Confidence 9999999999999999999999999999999999 3 3444777 5999999999999999999999999998
Q ss_pred C--CHHHHHHHHHHHHhcCCCchHHH-HHHHHHHHcC--------C-HHHHHHHHHHH-hccCCCCHHHHHHHHHHHhhh
Q 002379 858 Q--KEVEAVEELSKAIAFKPDLQMLH-LRAAFYESIG--------D-LTSAIRDSQAA-LCLDPNHMETLDLYNRARDQA 924 (929)
Q Consensus 858 g--~~~eA~~~l~kal~~~p~~~~~~-~la~~~~~~g--------~-~~~A~~~~~~a-l~l~P~~~~a~~~~~~l~~~~ 924 (929)
| ++++|++.++++ +.+|++...+ .+|.+|..+| + +++|++.|+++ ++++|.....|..+.+.....
T Consensus 288 g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 288 GLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp CGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred CccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 8 699999999998 8889887655 7799999985 3 59999999999 999999999999888766544
No 26
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.91 E-value=1.7e-23 Score=233.59 Aligned_cols=287 Identities=12% Similarity=0.072 Sum_probs=228.2
Q ss_pred HHHHHHHhhcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHH
Q 002379 569 RDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSL 648 (929)
Q Consensus 569 ~~~~~al~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~lg~ 648 (929)
..+.+.+...++++.. ....+..+|..+...|++++|...+ ++++..+|+++.++..+|.
T Consensus 48 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~A~~~~------------------~~al~~~p~~~~~~~~lg~ 107 (365)
T 4eqf_A 48 SASEKGYYFHTENPFK--DWPGAFEEGLKRLKEGDLPVTILFM------------------EAAILQDPGDAEAWQFLGI 107 (365)
T ss_dssp -----CCCCCSSCTTT--TCTTHHHHHHHHHHHTCHHHHHHHH------------------HHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHhhhcccCCccc--chhHHHHHHHHHHHCCCHHHHHHHH------------------HHHHHhCcCCHHHHHHHHH
Confidence 3344444444444411 1144566677777777777774444 7777777777888999999
Q ss_pred HHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch-HHHHHHHHHHHhcCCCCCCh
Q 002379 649 LLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESS 727 (929)
Q Consensus 649 ~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~~~~~l~~~l~~~~~~~~~~ 727 (929)
++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|++++++.|+. ..+..++
T Consensus 108 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~------------- 174 (365)
T 4eqf_A 108 TQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKK------------- 174 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC------------------
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhc-------------
Confidence 99999999999999999999999999999999999999999999999999999999977 3222221
Q ss_pred HHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC--C--CHHHHHHHHHHHHHhCCHHHHHHHH
Q 002379 728 TYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI--K--HTRAHQGLARVYYLKNELKAAYDEM 803 (929)
Q Consensus 728 ~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~--~--~~~a~~~la~~~~~~g~~~~A~~~~ 803 (929)
.....+..+|.++...|++++|+..|+++++. . ++.++..+|.++...|++++|+..+
T Consensus 175 ------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 236 (365)
T 4eqf_A 175 ------------------GSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAF 236 (365)
T ss_dssp --------------------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred ------------------cchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 00234667899999999999999999999998 3 5789999999999999999999999
Q ss_pred HHHHHHccCCHHHHHHHh----hhCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc--
Q 002379 804 TKLLEKAQYSASAFEKRS----EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDL-- 877 (929)
Q Consensus 804 ~~al~~~p~~~~~~~~lg----~~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~-- 877 (929)
+++++..|+++.+|..+| ..|++++|+..|+++++++|.++.++..+|.++...|++++|+..|++++++.|+.
T Consensus 237 ~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 316 (365)
T 4eqf_A 237 NAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRN 316 (365)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC--
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCC
Confidence 999999999999999999 67999999999999999999999999999999999999999999999999998762
Q ss_pred -----------hHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 002379 878 -----------QMLHLRAAFYESIGDLTSAIRDSQAALCL 906 (929)
Q Consensus 878 -----------~~~~~la~~~~~~g~~~~A~~~~~~al~l 906 (929)
..+..++.++..+|+.+.|....++.+..
T Consensus 317 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l~~ 356 (365)
T 4eqf_A 317 QQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDLDV 356 (365)
T ss_dssp ----------CHHHHHHHHHHHHHTCHHHHHHHHTTCCGG
T ss_pred CcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhHHH
Confidence 34557899999999999998887765543
No 27
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.91 E-value=4.3e-21 Score=225.88 Aligned_cols=394 Identities=10% Similarity=-0.040 Sum_probs=297.1
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccC-CHhHHHHHHHHHHHhccHHHHHHHHHHHHhhcCCch
Q 002379 504 LNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLALLALESNYM 582 (929)
Q Consensus 504 ~~kal~l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~ 582 (929)
|+++++.+|.+..+|..++.. ...|++++|...|+++++..| ++..|...+..+...|++++|...|++++...|+ .
T Consensus 2 le~al~~~P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~-~ 79 (530)
T 2ooe_A 2 AEKKLEENPYDLDAWSILIRE-AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLH-I 79 (530)
T ss_dssp HHHHHHHCTTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCC-H
T ss_pred hhhHhhhCCCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-h
Confidence 678999999999999999984 789999999999999999988 7888999999999999999999999999999994 4
Q ss_pred hhhccccHHHHHH-HHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHh---cCCCChHHHHHHHHHHHH------
Q 002379 583 MFHGRVSGDHLVK-LLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLI---NDPGKSFLRFRQSLLLLR------ 652 (929)
Q Consensus 583 ~~~~~~~a~~ll~-~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~---~~p~~~~~~~~lg~~~~~------ 652 (929)
..+...+ .+....|+++.|...+ ...|++++. .+|.+..+|...+.....
T Consensus 80 ------~lw~~~~~~~~~~~~~~~~a~~~~--------------~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~ 139 (530)
T 2ooe_A 80 ------DLWKCYLSYVRETKGKLPSYKEKM--------------AQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGS 139 (530)
T ss_dssp ------HHHHHHHHHHHHHTTTSTTHHHHH--------------HHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSS
T ss_pred ------HHHHHHHHHHHHHccchhhHHHHH--------------HHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCccc
Confidence 2222233 3445567777775433 345566665 366778889888887765
Q ss_pred ---hcCHHHHHHHHHHHHhcCCchH--HHHHHHHHHH-------------HHcCCHHHHHHHHHH------HHhh-----
Q 002379 653 ---LNCQKAAMRCLRLARNHSSSEH--ERLVYEGWIL-------------YDTGHREEALSRAEK------SISI----- 703 (929)
Q Consensus 653 ---~g~~~~A~~~l~~al~~~p~~~--~~~~~lg~~~-------------~~~g~~~eA~~~~~~------al~~----- 703 (929)
.|+++.|...|+++++ .|... ..|...+... ...+++.+|...++. +++.
T Consensus 140 ~~~~~~~~~a~~~y~~al~-~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~ 218 (530)
T 2ooe_A 140 YAENQRITAVRRVYQRGCV-NPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSV 218 (530)
T ss_dssp TTHHHHHHHHHHHHHHHTT-SCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCC
T ss_pred HHHHhHHHHHHHHHHHHHh-chhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccC
Confidence 7899999999999999 56542 3333322221 134567788777665 4432
Q ss_pred ccch--------HHHHHHHHHHHhcCCCCCCh----HHHHHHHHHHhhchhccCchhHHHHHHHHHHHH-------cCCH
Q 002379 704 ERTF--------EAFFLKAYILADTNLDPESS----TYVIQLLEEALRCPSDGLRKGQALNNLGSIYVE-------CGKL 764 (929)
Q Consensus 704 ~p~~--------~~~~~l~~~l~~~~~~~~~~----~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~-------~g~~ 764 (929)
.|.. ..|..............+.. ..++..|++|+... .....+|..+|..+.. .|++
T Consensus 219 ~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~---p~~~~~w~~~~~~~~~~~~~~~~~g~~ 295 (530)
T 2ooe_A 219 PPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL---GHHPDIWYEAAQYLEQSSKLLAEKGDM 295 (530)
T ss_dssp CCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHhchhhhhccch
Confidence 2221 23322222111111111221 13344555555421 1235889999999886 7998
Q ss_pred H-------HHHHHHHHHHc-C--CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCH-HHHHHHh----hhCCHHHH
Q 002379 765 D-------QAENCYINALD-I--KHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSA-SAFEKRS----EYSDREMA 829 (929)
Q Consensus 765 ~-------eA~~~~~~al~-~--~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~lg----~~g~~~~A 829 (929)
+ +|+..|+++++ . ++..+|..+|.++...|++++|...|+++++..|.++ .+|...+ ..|+.++|
T Consensus 296 ~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A 375 (530)
T 2ooe_A 296 NNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSG 375 (530)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHH
Confidence 7 99999999997 5 5678999999999999999999999999999999885 5888877 46889999
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHH-HHhcCCHHHHHHHHHHHHhcCCCchHHH-HHHHHHHHcCCHHHHHHHHHHHhccC
Q 002379 830 KNDLNMATQLDPLRTYPYRYRAAV-LMDDQKEVEAVEELSKAIAFKPDLQMLH-LRAAFYESIGDLTSAIRDSQAALCLD 907 (929)
Q Consensus 830 ~~~~~~al~l~p~~~~~~~~la~~-~~~~g~~~eA~~~l~kal~~~p~~~~~~-~la~~~~~~g~~~~A~~~~~~al~l~ 907 (929)
+..|+++++..|.....+...+.+ +...|++++|...|+++++..|+++.++ ..+.++...|+.++|...|+++++..
T Consensus 376 ~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~ 455 (530)
T 2ooe_A 376 RMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 455 (530)
T ss_dssp HHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc
Confidence 999999999999888888777765 3468999999999999999999887655 66999999999999999999999998
Q ss_pred CCCHH----HHHHHHHHHhh
Q 002379 908 PNHME----TLDLYNRARDQ 923 (929)
Q Consensus 908 P~~~~----a~~~~~~l~~~ 923 (929)
|.+++ +|..+.+.+..
T Consensus 456 ~~~~~~~~~lw~~~~~~e~~ 475 (530)
T 2ooe_A 456 SLPPEKSGEIWARFLAFESN 475 (530)
T ss_dssp CSCGGGCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHH
Confidence 77665 77666665543
No 28
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.91 E-value=2.1e-23 Score=232.88 Aligned_cols=247 Identities=13% Similarity=0.094 Sum_probs=217.0
Q ss_pred ChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHHHHH
Q 002379 639 KSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILA 718 (929)
Q Consensus 639 ~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~l~~~l~ 718 (929)
+...++.+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++++|++
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----------- 132 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNN----------- 132 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----------
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC-----------
Confidence 345599999999999999999999999999999999999999999999999999999999999999977
Q ss_pred hcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCH------------HHHHHH
Q 002379 719 DTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIKHT------------RAHQGL 786 (929)
Q Consensus 719 ~~~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~~------------~a~~~l 786 (929)
..++..+|.++...|++++|+..|++++++.+. ..+..+
T Consensus 133 -----------------------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l 183 (365)
T 4eqf_A 133 -----------------------------LKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRM 183 (365)
T ss_dssp -----------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC--------------
T ss_pred -----------------------------HHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHH
Confidence 456888999999999999999999999988433 223445
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHccC--CHHHHHHHh----hhCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCH
Q 002379 787 ARVYYLKNELKAAYDEMTKLLEKAQY--SASAFEKRS----EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKE 860 (929)
Q Consensus 787 a~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~lg----~~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~ 860 (929)
|.++...|++++|+..++++++..|+ ++.++..+| ..|++++|+..|+++++.+|.++.+|..+|.++...|++
T Consensus 184 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 263 (365)
T 4eqf_A 184 SKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRS 263 (365)
T ss_dssp -----CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 99999999999999999999999999 899999988 679999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCchHHH-HHHHHHHHcCCHHHHHHHHHHHhccCCCC------------HHHHHHHHHHHhhhh
Q 002379 861 VEAVEELSKAIAFKPDLQMLH-LRAAFYESIGDLTSAIRDSQAALCLDPNH------------METLDLYNRARDQAS 925 (929)
Q Consensus 861 ~eA~~~l~kal~~~p~~~~~~-~la~~~~~~g~~~~A~~~~~~al~l~P~~------------~~a~~~~~~l~~~~~ 925 (929)
++|+..|+++++.+|++...+ .+|.+|..+|++++|+..|+++++++|++ ..++..++++.....
T Consensus 264 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 341 (365)
T 4eqf_A 264 EEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMD 341 (365)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcC
Confidence 999999999999999987555 78999999999999999999999999883 567777777654443
No 29
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.91 E-value=1.3e-21 Score=230.27 Aligned_cols=404 Identities=11% Similarity=-0.080 Sum_probs=294.1
Q ss_pred HHHHHhhHHHHhcccHHHHHHHHHHHHhcCccccHHHHHHHHHHhchHHHHHHHHHhhhccCCCchhhhHHHHHHhhhhH
Q 002379 420 LALHQLGCVMFEREEYKDACYYFEAAADAGHIYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNLGRE 499 (929)
Q Consensus 420 ~~~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~~~a~la~~~~~~g~a~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 499 (929)
.++..++. +...|++++|...|+++++..|.... .+...+..... ....++
T Consensus 14 ~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~-----~w~~~~~~~~~-----------------------~~~~~~ 64 (530)
T 2ooe_A 14 DAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGR-----FWKLYIEAEIK-----------------------AKNYDK 64 (530)
T ss_dssp HHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHH-----HHHHHHHHHHH-----------------------TTCHHH
T ss_pred HHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHH-----HHHHHHHHHHh-----------------------cCCHHH
Confidence 45566666 36789999999999999999998765 22222221111 113448
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHH-HHHhCCHHHHHH----HHHHHhcc---cC-CHhHHHHHHHHHHH---------h
Q 002379 500 KIVDLNYASELDPTLSFPYKYRAVA-KMEEGQIRAAIS----EIDRIIVF---KL-SVDCLELRAWLFIA---------A 561 (929)
Q Consensus 500 Ai~~~~kal~l~P~~~~a~~~~a~~-~~~~g~~~~A~~----~~~~al~~---~~-~~~~~~~~a~~~~~---------~ 561 (929)
|...|++++...| +...|...+.. ....|++++|.. .|++++.. ++ ++..|...+..... .
T Consensus 65 a~~~~~ral~~~p-~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 143 (530)
T 2ooe_A 65 VEKLFQRCLMKVL-HIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAEN 143 (530)
T ss_dssp HHHHHHHHTTTCC-CHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHH
T ss_pred HHHHHHHHHhcCC-ChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHH
Confidence 8999999999999 57788887753 445677777665 77777643 22 45566666666554 7
Q ss_pred ccHHHHHHHHHHHHhhcCCchhhhccccHHHHHHH-------------HHHhhcccchHHHHHHhhhccccccccccHHH
Q 002379 562 DDYESALRDTLALLALESNYMMFHGRVSGDHLVKL-------------LNHHVRSWSPADCWIKLYDRWSSVDDIGSLAV 628 (929)
Q Consensus 562 g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~ll~~-------------~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~ 628 (929)
|+++.|...|+++++ .|.+... ..+..... +....+.+..|...++. +..
T Consensus 144 ~~~~~a~~~y~~al~-~P~~~~~----~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~------------~~~ 206 (530)
T 2ooe_A 144 QRITAVRRVYQRGCV-NPMINIE----QLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKE------------YET 206 (530)
T ss_dssp HHHHHHHHHHHHHTT-SCCTTHH----HHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHH------------HHH
T ss_pred hHHHHHHHHHHHHHh-chhhhHH----HHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHH------------HHH
Confidence 899999999999999 5654310 00000000 11122334444322210 111
Q ss_pred HHHHHhc-----CCCC-------hHHHHHHHHHHHHh----cCH----HHHHHHHHHHHhcCCchHHHHHHHHHHHHH--
Q 002379 629 INQMLIN-----DPGK-------SFLRFRQSLLLLRL----NCQ----KAAMRCLRLARNHSSSEHERLVYEGWILYD-- 686 (929)
Q Consensus 629 ~~~al~~-----~p~~-------~~~~~~lg~~~~~~----g~~----~~A~~~l~~al~~~p~~~~~~~~lg~~~~~-- 686 (929)
+...++. .|.. ...|.......... ++. ..++..|++++..+|.++.+|..+|..+..
T Consensus 207 ~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~ 286 (530)
T 2ooe_A 207 VMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSS 286 (530)
T ss_dssp HHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Confidence 1123332 2322 23443333222211 222 478899999999999999999999999986
Q ss_pred -----cCCHH-------HHHHHHHHHHh-hccchHHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHH
Q 002379 687 -----TGHRE-------EALSRAEKSIS-IERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNN 753 (929)
Q Consensus 687 -----~g~~~-------eA~~~~~~al~-~~p~~~~~~~l~~~l~~~~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~ 753 (929)
.|+++ +|+..|+++++ +.|++ ..+|..
T Consensus 287 ~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~----------------------------------------~~l~~~ 326 (530)
T 2ooe_A 287 KLLAEKGDMNNAKLFSDEAANIYERAISTLLKKN----------------------------------------MLLYFA 326 (530)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSC----------------------------------------HHHHHH
T ss_pred hhhhhccchhhhhhhhHHHHHHHHHHHHHhCccc----------------------------------------HHHHHH
Confidence 79987 89999999997 78876 455788
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHcCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHh-----hhCC
Q 002379 754 LGSIYVECGKLDQAENCYINALDIKH---TRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS-----EYSD 825 (929)
Q Consensus 754 lg~~~~~~g~~~eA~~~~~~al~~~~---~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg-----~~g~ 825 (929)
+|.++...|++++|...|+++++..+ ..+|..++..+...|++++|...|+++++..|.....+...+ ..|+
T Consensus 327 ~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~ 406 (530)
T 2ooe_A 327 YADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKD 406 (530)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCC
T ss_pred HHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCC
Confidence 88889999999999999999999843 358999999999999999999999999998888766665544 4799
Q ss_pred HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchH----HH-HHHHHHHHcCCHHHHHHHH
Q 002379 826 REMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQM----LH-LRAAFYESIGDLTSAIRDS 900 (929)
Q Consensus 826 ~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~----~~-~la~~~~~~g~~~~A~~~~ 900 (929)
.++|...|+++++..|+++.+|..++.++...|+.++|...|++++...|.++. ++ ....+....|+.+.+...+
T Consensus 407 ~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~ 486 (530)
T 2ooe_A 407 KSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVE 486 (530)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998776542 44 4477788899999999999
Q ss_pred HHHhccCCCC
Q 002379 901 QAALCLDPNH 910 (929)
Q Consensus 901 ~~al~l~P~~ 910 (929)
+++++..|++
T Consensus 487 ~r~~~~~p~~ 496 (530)
T 2ooe_A 487 KRRFTAFREE 496 (530)
T ss_dssp HHHHHHTHHH
T ss_pred HHHHHHCchh
Confidence 9999999953
No 30
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.90 E-value=4.4e-23 Score=230.34 Aligned_cols=251 Identities=13% Similarity=0.088 Sum_probs=218.3
Q ss_pred HHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccC-CHhHHHHHHHHHHHhcc-HHHHHHHHHHHHhhcCCchh
Q 002379 506 YASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADD-YESALRDTLALLALESNYMM 583 (929)
Q Consensus 506 kal~l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~~g~-~~~A~~~~~~al~~~p~~~~ 583 (929)
.++.++|++..+|..+|.++...|++++|+..|++++.++| ++..+..+|.++..+|+ +++|+..|+++++++|++.
T Consensus 88 ~ai~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~- 166 (382)
T 2h6f_A 88 VQIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNY- 166 (382)
T ss_dssp SEECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCH-
T ss_pred hhhhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCH-
Confidence 35678899999999999999999999999999999999999 78899999999999997 9999999999999999999
Q ss_pred hhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHH
Q 002379 584 FHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCL 663 (929)
Q Consensus 584 ~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l 663 (929)
.++..+|.++...|++++|+..+ +++++++|++..+|+.+|.++..+|++++|+..|
T Consensus 167 -----~a~~~~g~~~~~~g~~~eAl~~~------------------~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~ 223 (382)
T 2h6f_A 167 -----QVWHHRRVLVEWLRDPSQELEFI------------------ADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYV 223 (382)
T ss_dssp -----HHHHHHHHHHHHHTCCTTHHHHH------------------HHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHH
T ss_pred -----HHHHHHHHHHHHccCHHHHHHHH------------------HHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHH
Confidence 88889999999999999995555 9999999999999999999999999999999999
Q ss_pred HHHHhcCCchHHHHHHHHHHHHH-cCCHHHH-----HHHHHHHHhhccchHHHHHHHHHHHhcCCCCCChHHHHHHHHHH
Q 002379 664 RLARNHSSSEHERLVYEGWILYD-TGHREEA-----LSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEA 737 (929)
Q Consensus 664 ~~al~~~p~~~~~~~~lg~~~~~-~g~~~eA-----~~~~~~al~~~p~~~~~~~l~~~l~~~~~~~~~~~~a~~~~e~A 737 (929)
+++++++|++..+|+++|.++.. .|..++| +..|++++.++|++
T Consensus 224 ~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~------------------------------ 273 (382)
T 2h6f_A 224 DQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHN------------------------------ 273 (382)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTC------------------------------
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCC------------------------------
Confidence 99999999999999999999999 5665888 59999999999988
Q ss_pred hhchhccCchhHHHHHHHHHHHHcC--CHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHhC--------C-HHHHHHHHH
Q 002379 738 LRCPSDGLRKGQALNNLGSIYVECG--KLDQAENCYINALDI--KHTRAHQGLARVYYLKN--------E-LKAAYDEMT 804 (929)
Q Consensus 738 l~~~~~al~~~~a~~~lg~~~~~~g--~~~eA~~~~~~al~~--~~~~a~~~la~~~~~~g--------~-~~~A~~~~~ 804 (929)
..+|+++|.++...| ++++|++.++++ +. +.+.++..+|.+|..+| + +++|+..|+
T Consensus 274 ----------~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~ 342 (382)
T 2h6f_A 274 ----------ESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCE 342 (382)
T ss_dssp ----------HHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHH
Confidence 445666777777666 688999988887 55 56678899999998875 2 466666666
Q ss_pred HH-HHHccCCHHHHHHHh
Q 002379 805 KL-LEKAQYSASAFEKRS 821 (929)
Q Consensus 805 ~a-l~~~p~~~~~~~~lg 821 (929)
++ ++.+|.....|..++
T Consensus 343 ~l~~~~DP~r~~~w~~~~ 360 (382)
T 2h6f_A 343 ILAKEKDTIRKEYWRYIG 360 (382)
T ss_dssp HHHHTTCGGGHHHHHHHH
T ss_pred HHHHHhCchhHHHHHHHH
Confidence 66 666666665555443
No 31
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.90 E-value=2.7e-22 Score=219.21 Aligned_cols=266 Identities=14% Similarity=0.112 Sum_probs=231.8
Q ss_pred CchhhhHHHHHHhhhh--HHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccC-CHhHHHHHHHHHH
Q 002379 483 PTGWMYQERSLYNLGR--EKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFI 559 (929)
Q Consensus 483 ~~~~~~~~~~l~~~~~--~Ai~~~~kal~l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~ 559 (929)
...|+..+..++..++ +|+..|+++++.+|+++.++..+|.++...|++++|+..++++++..| ++..+..+|.++.
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 100 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHH
Confidence 3567778888887776 999999999999999999999999999999999999999999999888 7888999999999
Q ss_pred HhccHHHHHHHHHHHHhhcCCchhhhccccHHHHH--------------HH-HHHhhcccchHHHHHHhhhccccccccc
Q 002379 560 AADDYESALRDTLALLALESNYMMFHGRVSGDHLV--------------KL-LNHHVRSWSPADCWIKLYDRWSSVDDIG 624 (929)
Q Consensus 560 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~ll--------------~~-~~~~~~~~~~A~~~l~l~~~~~~~~~~~ 624 (929)
..|++++|+..++++++..|++... ...+ +. ++...|++++|...+
T Consensus 101 ~~~~~~~A~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~------------- 161 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQPQYEQL------GSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLL------------- 161 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTSTTTTTC--------------------------CCTTSHHHHHHHHHHH-------------
T ss_pred HcCCHHHHHHHHHHHHHhCCccHHH------HHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHH-------------
Confidence 9999999999999999999998832 2222 33 466677777775555
Q ss_pred cHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 002379 625 SLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIE 704 (929)
Q Consensus 625 ~l~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~ 704 (929)
+++++.+|.++.++..+|.++...|++++|+..++++++.+|+++.++..+|.++...|++++|+..++++++..
T Consensus 162 -----~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 236 (327)
T 3cv0_A 162 -----HAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN 236 (327)
T ss_dssp -----HHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred -----HHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cchHHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC--C----
Q 002379 705 RTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI--K---- 778 (929)
Q Consensus 705 p~~~~~~~l~~~l~~~~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~--~---- 778 (929)
|++ ..++..+|.++...|++++|+..|+++++. .
T Consensus 237 ~~~----------------------------------------~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 276 (327)
T 3cv0_A 237 PGY----------------------------------------VRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTP 276 (327)
T ss_dssp TTC----------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-
T ss_pred CCC----------------------------------------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccc
Confidence 876 445788899999999999999999999888 3
Q ss_pred --------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccC
Q 002379 779 --------HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQY 812 (929)
Q Consensus 779 --------~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 812 (929)
.+.++..+|.++...|++++|...++++++..|+
T Consensus 277 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~ 318 (327)
T 3cv0_A 277 TGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFAK 318 (327)
T ss_dssp ----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHHH
T ss_pred cccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcch
Confidence 4578899999999999999999999888776554
No 32
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens}
Probab=99.90 E-value=1.1e-24 Score=208.96 Aligned_cols=125 Identities=21% Similarity=0.295 Sum_probs=92.9
Q ss_pred cCCCCCCEEEEEcCeEEEeehhHHhccCHHHHHHhcCCCCcCCCCeeEecCCCCCHHHHHHHhhhHccCCCCCCChhHHH
Q 002379 213 SLEEDDSVTFCVRDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFCPGIVL 292 (929)
Q Consensus 213 ~~~~~~~v~~~v~~~~~~~hr~iLaa~S~~F~~mf~~~~~e~~~~~i~~~~~~~~~~~~~~~l~~~Yt~~~~~~~~~~~~ 292 (929)
.++...||+|+|+|++|+|||.||+++|+||++||+++|.|+....|++ +++++++|+.+|+|+|||+++ ++.+++.
T Consensus 21 ~~~~~~Dv~l~v~~~~~~~Hk~iL~~~S~~F~~~f~~~~~e~~~~~i~l--~~~~~~~~~~~l~~~Y~~~~~-~~~~~~~ 97 (145)
T 4eoz_A 21 ENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEI--NDVEPEVFKEMMCFIYTGKAP-NLDKMAD 97 (145)
T ss_dssp HHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHSSSHHHHHTEEEE--CSSCHHHHHHHHHHHHHSCCT-TGGGTHH
T ss_pred hCCCCcceEEEECCEEEEeehHHHHHcCHHHHHHHcCCCcCCCCceEEe--cCCCHHHHHHHHHhhccCccC-CcHHHHH
Confidence 3344445999999999999999999999999999999999999999999 999999999999999999999 9999999
Q ss_pred HHHHHhchhChHhHHHHHHHHHHhhcCChhhHHHHHHHHHHhChHHHHH
Q 002379 293 ELLSFANRFCCEEMKSACDAHLASLVGDIEDALILIDYGLEERATLLVA 341 (929)
Q Consensus 293 ~ll~~A~~~~~~~l~~~C~~~l~~~~~~~~n~~~~~~~a~~~~~~~L~~ 341 (929)
+++.+|++|+++.|+..|+++|.+.++ ++||+.++.+|+.|++++|++
T Consensus 98 ~ll~~A~~~~~~~l~~~c~~~l~~~l~-~~n~~~~l~~A~~~~~~~Lk~ 145 (145)
T 4eoz_A 98 DLLAAADKYALERLKVMCEDALCSNLS-VENAAEILILADLHSADQLKT 145 (145)
T ss_dssp HHHHHHHHTTCHHHHHHHHCC----------------------------
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHhCHHHhcC
Confidence 999999999999999999999999999 999999999999999999874
No 33
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.90 E-value=1.7e-22 Score=220.93 Aligned_cols=276 Identities=12% Similarity=0.029 Sum_probs=236.4
Q ss_pred cHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 002379 589 SGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARN 668 (929)
Q Consensus 589 ~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~ 668 (929)
..+..++..+...|++++|...+ +++++.+|+++.++..+|.++...|++++|+..++++++
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~------------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 83 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAF------------------EAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARM 83 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHH------------------HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHH------------------HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 56677888999999999996655 999999999999999999999999999999999999999
Q ss_pred cCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch-HHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCch
Q 002379 669 HSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRK 747 (929)
Q Consensus 669 ~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~~~~~l~~~l~~~~~~~~~~~~a~~~~e~Al~~~~~al~~ 747 (929)
.+|.++.++..+|.++...|++++|+..+++++...|+. ..+..+..... .
T Consensus 84 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------~ 135 (327)
T 3cv0_A 84 LDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADV----------------------------D 135 (327)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------------------------
T ss_pred cCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHH----------------------------H
Confidence 999999999999999999999999999999999999887 33322211110 0
Q ss_pred hHHHHHH-HH-HHHHcCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHh--
Q 002379 748 GQALNNL-GS-IYVECGKLDQAENCYINALDI--KHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS-- 821 (929)
Q Consensus 748 ~~a~~~l-g~-~~~~~g~~~eA~~~~~~al~~--~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg-- 821 (929)
......+ |. ++...|++++|+..++++++. ..+.++..+|.++...|++++|+..++++++..|++..++..+|
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 215 (327)
T 3cv0_A 136 IDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGAT 215 (327)
T ss_dssp ----------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 1112234 33 478889999999999999988 45789999999999999999999999999999999999999888
Q ss_pred --hhCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------------chH-HHHHHHH
Q 002379 822 --EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPD------------LQM-LHLRAAF 886 (929)
Q Consensus 822 --~~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~------------~~~-~~~la~~ 886 (929)
..|++++|+..++++++.+|.+..++..+|.++...|++++|+..|+++++..|+ ... +..+|.+
T Consensus 216 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 295 (327)
T 3cv0_A 216 LANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRML 295 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHH
Confidence 6799999999999999999999999999999999999999999999999999998 554 4478999
Q ss_pred HHHcCCHHHHHHHHHHHhccCCCC
Q 002379 887 YESIGDLTSAIRDSQAALCLDPNH 910 (929)
Q Consensus 887 ~~~~g~~~~A~~~~~~al~l~P~~ 910 (929)
+..+|++++|...++++++..|++
T Consensus 296 ~~~~g~~~~A~~~~~~~l~~~~~~ 319 (327)
T 3cv0_A 296 LNVMNRPDLVELTYAQNVEPFAKE 319 (327)
T ss_dssp HHHTTCHHHHHHHTTCCSHHHHHH
T ss_pred HHhcCCHHHHHHHHHHHHHhcchh
Confidence 999999999999999998876543
No 34
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.90 E-value=1.5e-22 Score=215.52 Aligned_cols=250 Identities=16% Similarity=0.129 Sum_probs=219.1
Q ss_pred ChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHHHHH
Q 002379 639 KSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILA 718 (929)
Q Consensus 639 ~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~l~~~l~ 718 (929)
++..++..|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++ .|++.
T Consensus 2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~---------- 70 (272)
T 3u4t_A 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNAT---------- 70 (272)
T ss_dssp ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTT----------
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCch----------
Confidence 3467889999999999999999999999999999999999999999999999999999999998 44330
Q ss_pred hcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHhCCH
Q 002379 719 DTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI--KHTRAHQGLARVYYLKNEL 796 (929)
Q Consensus 719 ~~~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~--~~~~a~~~la~~~~~~g~~ 796 (929)
.....++..+|.++...|++++|+..|+++++. ..+.++..+|.++...|++
T Consensus 71 --------------------------~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~ 124 (272)
T 3u4t_A 71 --------------------------KAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNF 124 (272)
T ss_dssp --------------------------TCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCH
T ss_pred --------------------------hHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCH
Confidence 001355899999999999999999999999998 5668999999999999999
Q ss_pred HHHHHHHHHHHHHccCCHHHHHHHh----hhCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCC---HHHHHHHHHH
Q 002379 797 KAAYDEMTKLLEKAQYSASAFEKRS----EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQK---EVEAVEELSK 869 (929)
Q Consensus 797 ~~A~~~~~~al~~~p~~~~~~~~lg----~~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~---~~eA~~~l~k 869 (929)
++|+..++++++..|++..++..+| ..+++++|+..|+++++.+|.+..++..+|.++...|+ +++|+..|++
T Consensus 125 ~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 204 (272)
T 3u4t_A 125 PLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEK 204 (272)
T ss_dssp HHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHH
T ss_pred HHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHH
Confidence 9999999999999999999999988 35799999999999999999999999999999999998 9999999999
Q ss_pred HHhcC---CCc------hHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHhhhh
Q 002379 870 AIAFK---PDL------QMLHLRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNRARDQAS 925 (929)
Q Consensus 870 al~~~---p~~------~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~l~~~~~ 925 (929)
+++.. |+. ..+..+|.+|...|++++|+.+|+++++++|+++.++..+..+.....
T Consensus 205 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 205 LIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred HHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 99886 442 234467999999999999999999999999999999999888776543
No 35
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.89 E-value=1.3e-21 Score=205.98 Aligned_cols=241 Identities=18% Similarity=0.148 Sum_probs=218.9
Q ss_pred ChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch-HHHHHHHHHH
Q 002379 639 KSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYIL 717 (929)
Q Consensus 639 ~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~~~~~l~~~l 717 (929)
.+..+..+|.++...|++++|+..|+++++.+ .++.++..+|.++...|++++|+..+++++++.|+. ..+.
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~------ 76 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYK------ 76 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHH------
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchH------
Confidence 46788999999999999999999999999999 889999999999999999999999999999988865 1000
Q ss_pred HhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHH
Q 002379 718 ADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIKHTRAHQGLARVYYLKNELK 797 (929)
Q Consensus 718 ~~~~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~~~a~~~la~~~~~~g~~~ 797 (929)
....++..+|.++...|++++|+..|++++++.+. +.++...|+++
T Consensus 77 ----------------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~~~~~ 122 (258)
T 3uq3_A 77 ----------------------------VISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT------ADILTKLRNAE 122 (258)
T ss_dssp ----------------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC------HHHHHHHHHHH
T ss_pred ----------------------------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch------hHHHHHHhHHH
Confidence 00356899999999999999999999999998543 56778888999
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHh----hhCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 002379 798 AAYDEMTKLLEKAQYSASAFEKRS----EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAF 873 (929)
Q Consensus 798 ~A~~~~~~al~~~p~~~~~~~~lg----~~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~ 873 (929)
+|+..+++++...|++..++..+| ..|++++|+..|+++++.+|.++.++..+|.++...|++++|+..++++++.
T Consensus 123 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 202 (258)
T 3uq3_A 123 KELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEK 202 (258)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 999999999999999999999998 6799999999999999999999999999999999999999999999999999
Q ss_pred CCCchHHH-HHHHHHHHcCCHHHHHHHHHHHhccC------CCCHHHHHHHHHH
Q 002379 874 KPDLQMLH-LRAAFYESIGDLTSAIRDSQAALCLD------PNHMETLDLYNRA 920 (929)
Q Consensus 874 ~p~~~~~~-~la~~~~~~g~~~~A~~~~~~al~l~------P~~~~a~~~~~~l 920 (929)
+|++...+ .+|.++..+|++++|+..|+++++++ |++.+++..+.++
T Consensus 203 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 203 DPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence 99987655 77999999999999999999999999 9999988887764
No 36
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.88 E-value=4.2e-21 Score=220.78 Aligned_cols=381 Identities=14% Similarity=0.062 Sum_probs=261.6
Q ss_pred HHhhHHHHhcccHHHHHHHHHHHHhcCccccHHHHHHHHHHhchHHHHHHHHHhhhccCCCchhhhHHHHHHhhhhHHHH
Q 002379 423 HQLGCVMFEREEYKDACYYFEAAADAGHIYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNLGREKIV 502 (929)
Q Consensus 423 ~~lG~~~~~~g~y~~A~~~f~~al~~~~~~~~a~la~~~~~~g~a~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Ai~ 502 (929)
..+|..+++.|++++|+..|+++.+.+.......++.++...|.. .+.++|+.
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~---------------------------~d~~~A~~ 59 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDP---------------------------AQIKQAEA 59 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCCTGGGTCC--------------------------------------------
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCC---------------------------CCHHHHHH
Confidence 458899999999999999999998875444333333333322211 12247888
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHhC-----CHHHHHHHHHHHhcccCCHhHHHHHHHHHHHhccHHHHHHHHHHHHhh
Q 002379 503 DLNYASELDPTLSFPYKYRAVAKMEEG-----QIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLAL 577 (929)
Q Consensus 503 ~~~kal~l~P~~~~a~~~~a~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~ 577 (929)
.|+++++. ++.+++.+|.++...+ ++++|+..|+++++.. ++..++.+|.+|...+..+++...++.....
T Consensus 60 ~~~~A~~~---~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g-~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a 135 (452)
T 3e4b_A 60 TYRAAADT---SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANG-EGNTLIPLAMLYLQYPHSFPNVNAQQQISQW 135 (452)
T ss_dssp --------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTT-CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHH
T ss_pred HHHHHHhC---CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Confidence 88888866 6778899998776665 7889999999998543 5667888899988877655544444333332
Q ss_pred c-CCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHHHHhc--
Q 002379 578 E-SNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLN-- 654 (929)
Q Consensus 578 ~-p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~lg~~~~~~g-- 654 (929)
. +.++ .+...++.++...+.++++.... ...+..+...+ +.+++.+|.+|...|
T Consensus 136 ~~~g~~------~a~~~Lg~~y~~~~~~~~~~~~a--------------~~~~~~a~~~~---~~a~~~Lg~~~~~~g~~ 192 (452)
T 3e4b_A 136 QAAGYP------EAGLAQVLLYRTQGTYDQHLDDV--------------ERICKAALNTT---DICYVELATVYQKKQQP 192 (452)
T ss_dssp HHHTCT------THHHHHHHHHHHHTCGGGGHHHH--------------HHHHHHHTTTC---TTHHHHHHHHHHHTTCH
T ss_pred HHCCCH------HHHHHHHHHHHcCCCcccCHHHH--------------HHHHHHHHcCC---HHHHHHHHHHHHHcCCc
Confidence 2 2344 67777888888888777665443 12224444434 448889999999988
Q ss_pred -CHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHc----CCHHHHHHHHHHHHhhccchHHHHHHHHHHHhcCCCCCChHH
Q 002379 655 -CQKAAMRCLRLARNHSSSEHERLVYEGWILYDT----GHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTY 729 (929)
Q Consensus 655 -~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~----g~~~eA~~~~~~al~~~p~~~~~~~l~~~l~~~~~~~~~~~~ 729 (929)
++++|+..|+++.+..|.....++.+|.+|... +++++|+..|+++. |++
T Consensus 193 ~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~---------------------- 247 (452)
T 3e4b_A 193 EQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGY---------------------- 247 (452)
T ss_dssp HHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGS----------------------
T ss_pred ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCC----------------------
Confidence 889999999999999988888888899988765 78899999998887 655
Q ss_pred HHHHHHHHhhchhccCchhHHHHHHHHH-H--HHcCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC-----CHHHHHH
Q 002379 730 VIQLLEEALRCPSDGLRKGQALNNLGSI-Y--VECGKLDQAENCYINALDIKHTRAHQGLARVYYLKN-----ELKAAYD 801 (929)
Q Consensus 730 a~~~~e~Al~~~~~al~~~~a~~~lg~~-~--~~~g~~~eA~~~~~~al~~~~~~a~~~la~~~~~~g-----~~~~A~~ 801 (929)
..+++++|.+ + ...+++++|+.+|+++.+.+++.+++++|.+|. .| ++++|+.
T Consensus 248 ------------------~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~ 308 (452)
T 3e4b_A 248 ------------------PASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYY-EGKWVPADAKAAEA 308 (452)
T ss_dssp ------------------THHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HCSSSCCCHHHHHH
T ss_pred ------------------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-cCCCCCCCHHHHHH
Confidence 3456666766 3 457899999999999999899999999999988 66 8999999
Q ss_pred HHHHHHHHccCCHHHHHHHh---hh-----CCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHh----cCCHHHHHHHHHH
Q 002379 802 EMTKLLEKAQYSASAFEKRS---EY-----SDREMAKNDLNMATQLDPLRTYPYRYRAAVLMD----DQKEVEAVEELSK 869 (929)
Q Consensus 802 ~~~~al~~~p~~~~~~~~lg---~~-----g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~----~g~~~eA~~~l~k 869 (929)
.|+++. +.++.+++.+| .. .++++|+.+|+++.+ +.++.+.+.+|.+|.. ..++.+|..+|++
T Consensus 309 ~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~ 383 (452)
T 3e4b_A 309 HFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR--NGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQL 383 (452)
T ss_dssp HHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT--TTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHH
T ss_pred HHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh--hChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Confidence 999888 78888888888 22 388999999999877 4568888999988875 4589999999999
Q ss_pred HHhcCCCchHHHHHHHHHHH--cCCHHHHHHHHHHHhccC
Q 002379 870 AIAFKPDLQMLHLRAAFYES--IGDLTSAIRDSQAALCLD 907 (929)
Q Consensus 870 al~~~p~~~~~~~la~~~~~--~g~~~~A~~~~~~al~l~ 907 (929)
+.+..+... ...++.+... .++..+|....++..+..
T Consensus 384 A~~~g~~~a-~~~l~~l~~~~~~~~~~~a~~~~~~~~~~~ 422 (452)
T 3e4b_A 384 AKAQDTPEA-NDLATQLEAPLTPAQRAEGQRLVQQELAAR 422 (452)
T ss_dssp HHTTCCHHH-HHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHH-HHHHHHHHHhCCHHHHHHHHHHHHHHHHhc
Confidence 988654332 2333443322 345666766666655543
No 37
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.88 E-value=3.2e-21 Score=198.59 Aligned_cols=196 Identities=19% Similarity=0.135 Sum_probs=134.2
Q ss_pred CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHHH
Q 002379 637 PGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYI 716 (929)
Q Consensus 637 p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~l~~~ 716 (929)
|.++.+++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++++|++
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~--------- 72 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRY--------- 72 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---------
Confidence 78899999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHcC--CCHHHH
Q 002379 717 LADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVEC-----------GKLDQAENCYINALDI--KHTRAH 783 (929)
Q Consensus 717 l~~~~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~-----------g~~~eA~~~~~~al~~--~~~~a~ 783 (929)
..++.++|.++... |++++|+..|++++++ +++.++
T Consensus 73 -------------------------------~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~ 121 (217)
T 2pl2_A 73 -------------------------------LGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLH 121 (217)
T ss_dssp -------------------------------HHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred -------------------------------HHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHH
Confidence 33344555555544 6666666666666666 345566
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHhhhCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHH
Q 002379 784 QGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEA 863 (929)
Q Consensus 784 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA 863 (929)
..+|.++...|++++|+..|+++++.+ ++ +.++..+|.++...|++++|
T Consensus 122 ~~lg~~~~~~g~~~~A~~~~~~al~~~-~~------------------------------~~~~~~la~~~~~~g~~~~A 170 (217)
T 2pl2_A 122 LQRGLVYALLGERDKAEASLKQALALE-DT------------------------------PEIRSALAELYLSMGRLDEA 170 (217)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-CC------------------------------HHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcc-cc------------------------------hHHHHHHHHHHHHcCCHHHH
Confidence 666666666666666666666666655 44 44555556666666666666
Q ss_pred HHHHHHHHhcCCCchHHH-HHHHHHHHcCCHHHHHHHHHHH
Q 002379 864 VEELSKAIAFKPDLQMLH-LRAAFYESIGDLTSAIRDSQAA 903 (929)
Q Consensus 864 ~~~l~kal~~~p~~~~~~-~la~~~~~~g~~~~A~~~~~~a 903 (929)
+..|+++++.+|+++..+ .+|.++..+|++++|+..|+++
T Consensus 171 ~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 171 LAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 666666666666555433 4466666666666666665554
No 38
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.87 E-value=5.8e-21 Score=203.20 Aligned_cols=246 Identities=11% Similarity=-0.002 Sum_probs=189.3
Q ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHhcccC-CHhHHHHHHHHHHHhccHHHHHHHHHHHHhhcCCchhhhccccHHHH
Q 002379 515 SFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHL 593 (929)
Q Consensus 515 ~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~l 593 (929)
+..++.+|.+++..|++++|+..|+++++..| ++..+..+|.++...|++++|+..++++++ .|.++.... .++..
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~--~~~~~ 79 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKS--ADFEY 79 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCH--HHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHH--HHHHH
Confidence 45677778888888888888888888887776 566777788888888888888888888887 444442211 44667
Q ss_pred HHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCch
Q 002379 594 VKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE 673 (929)
Q Consensus 594 l~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~ 673 (929)
+|.++...|++++|...+ +++++.+|.++.++..+|.++...|++++|+..|+++++.+|.+
T Consensus 80 lg~~~~~~~~~~~A~~~~------------------~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~ 141 (272)
T 3u4t_A 80 YGKILMKKGQDSLAIQQY------------------QAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTD 141 (272)
T ss_dssp HHHHHHHTTCHHHHHHHH------------------HHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCC
T ss_pred HHHHHHHcccHHHHHHHH------------------HHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCc
Confidence 777777777777775554 77777788888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHH
Q 002379 674 HERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNN 753 (929)
Q Consensus 674 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~l~~~l~~~~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~ 753 (929)
+.++..+|...+..+++++|+..|+++++++|++ ..++..
T Consensus 142 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~----------------------------------------~~~~~~ 181 (272)
T 3u4t_A 142 PKVFYELGQAYYYNKEYVKADSSFVKVLELKPNI----------------------------------------YIGYLW 181 (272)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC----------------------------------------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc----------------------------------------hHHHHH
Confidence 8888888855555568888888888888888876 334666
Q ss_pred HHHHHHHcCC---HHHHHHHHHHHHcCC---CH-------HHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHH
Q 002379 754 LGSIYVECGK---LDQAENCYINALDIK---HT-------RAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKR 820 (929)
Q Consensus 754 lg~~~~~~g~---~~eA~~~~~~al~~~---~~-------~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 820 (929)
+|.++...|+ +++|+..|+++++.. +. .++..+|.+|...|++++|+..++++++.+|+++.++..+
T Consensus 182 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 261 (272)
T 3u4t_A 182 RARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGL 261 (272)
T ss_dssp HHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHh
Confidence 7777777777 777888888887761 21 5788899999999999999999999999999988887666
Q ss_pred h
Q 002379 821 S 821 (929)
Q Consensus 821 g 821 (929)
+
T Consensus 262 ~ 262 (272)
T 3u4t_A 262 K 262 (272)
T ss_dssp C
T ss_pred h
Confidence 5
No 39
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.87 E-value=4.1e-21 Score=197.73 Aligned_cols=198 Identities=16% Similarity=0.074 Sum_probs=171.3
Q ss_pred CCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccC-CHhHHHHHHHHHHHhccHHHHHHHHHHHHhhcCCchhhhccccH
Q 002379 512 PTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSG 590 (929)
Q Consensus 512 P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a 590 (929)
|+++.+++.+|.++...|++++|+..|+++++.+| ++..+..+|.++...|++++|+..|+++++++|++. .+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~------~a 75 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYL------GG 75 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH------HH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH------HH
Confidence 78899999999999999999999999999999998 889999999999999999999999999999999999 78
Q ss_pred HHHHHHHHHhh-----------cccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHH
Q 002379 591 DHLVKLLNHHV-----------RSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAA 659 (929)
Q Consensus 591 ~~ll~~~~~~~-----------~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A 659 (929)
+..+|.++... |++++|+..+ +++++.+|+++.++..+|.++..+|++++|
T Consensus 76 ~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~------------------~~al~~~P~~~~~~~~lg~~~~~~g~~~~A 137 (217)
T 2pl2_A 76 YMVLSEAYVALYRQAEDRERGKGYLEQALSVL------------------KDAERVNPRYAPLHLQRGLVYALLGERDKA 137 (217)
T ss_dssp HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHH------------------HHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHhhhhhhhhcccccCHHHHHHHH------------------HHHHHhCcccHHHHHHHHHHHHHcCChHHH
Confidence 88899999999 9999995555 999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHHHHHhcCCCCCChHHHHHHHHHHhh
Q 002379 660 MRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALR 739 (929)
Q Consensus 660 ~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~l~~~l~~~~~~~~~~~~a~~~~e~Al~ 739 (929)
+..|+++++++ +++.++..+|.++...|++++|+..|+++++++|++
T Consensus 138 ~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~-------------------------------- 184 (217)
T 2pl2_A 138 EASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKD-------------------------------- 184 (217)
T ss_dssp HHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC--------------------------------
T ss_pred HHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--------------------------------
Confidence 99999999999 999999999999999999999999999999999988
Q ss_pred chhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002379 740 CPSDGLRKGQALNNLGSIYVECGKLDQAENCYINA 774 (929)
Q Consensus 740 ~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~a 774 (929)
..++.++|.++...|++++|+..|+++
T Consensus 185 --------~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 185 --------LDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp --------HHHHHHHHHHHTC--------------
T ss_pred --------hHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 445667777777778888888777765
No 40
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.87 E-value=2.5e-20 Score=201.05 Aligned_cols=245 Identities=11% Similarity=-0.011 Sum_probs=203.4
Q ss_pred HHHHhcCCCC-hHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--ccc
Q 002379 630 NQMLINDPGK-SFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISI--ERT 706 (929)
Q Consensus 630 ~~al~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~p~ 706 (929)
++....+|++ ......++.+|..+|+++.|+..++. .+|....++..++..+...|++++|++.+++++.. +|+
T Consensus 23 ~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~ 99 (291)
T 3mkr_A 23 QRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVT 99 (291)
T ss_dssp HHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCS
T ss_pred HhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCC
Confidence 4444555555 34666777888888888888877655 25556677777788888888888888888887764 465
Q ss_pred hHHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCHHHHHHH
Q 002379 707 FEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIKHTRAHQGL 786 (929)
Q Consensus 707 ~~~~~~l~~~l~~~~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~~~a~~~l 786 (929)
+ ..+++.+|.++...|++++|+..|++ -+++.++..+
T Consensus 100 ~----------------------------------------~~~~~~la~~~~~~g~~~~Al~~l~~---~~~~~~~~~l 136 (291)
T 3mkr_A 100 N----------------------------------------TTFLLMAASIYFYDQNPDAALRTLHQ---GDSLECMAMT 136 (291)
T ss_dssp C----------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHTT---CCSHHHHHHH
T ss_pred C----------------------------------------HHHHHHHHHHHHHCCCHHHHHHHHhC---CCCHHHHHHH
Confidence 5 45688899999999999999999988 4677899999
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHccCCHHHH-----HHHh-hhCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCH
Q 002379 787 ARVYYLKNELKAAYDEMTKLLEKAQYSASAF-----EKRS-EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKE 860 (929)
Q Consensus 787 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~-----~~lg-~~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~ 860 (929)
|.++..+|++++|+..++++++.+|++.... ..+. ..|++++|+..|+++++.+|.++.+++.+|.++...|++
T Consensus 137 ~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~ 216 (291)
T 3mkr_A 137 VQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRW 216 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH
Confidence 9999999999999999999999999986432 2332 348899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCchHHH-HHHHHHHHcCCHHH-HHHHHHHHhccCCCCHHHHHHHHHH
Q 002379 861 VEAVEELSKAIAFKPDLQMLH-LRAAFYESIGDLTS-AIRDSQAALCLDPNHMETLDLYNRA 920 (929)
Q Consensus 861 ~eA~~~l~kal~~~p~~~~~~-~la~~~~~~g~~~~-A~~~~~~al~l~P~~~~a~~~~~~l 920 (929)
++|++.|+++++.+|+++..+ ++|.++...|+.++ +.++++++++++|+++.+.....+-
T Consensus 217 ~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d~~~~~ 278 (291)
T 3mkr_A 217 EAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEYRAKE 278 (291)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 999999999999999997655 78999999999976 5789999999999999998876654
No 41
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}
Probab=99.87 E-value=5.5e-22 Score=179.71 Aligned_cols=100 Identities=25% Similarity=0.338 Sum_probs=88.4
Q ss_pred CCCCCEEEEEcC----eEEEeehhHHhccCHHHHHHhcCCCCcCCCCeeEecCCCCCHHHHHHHhhhHccCCCCCCChhH
Q 002379 215 EEDDSVTFCVRD----KEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFCPGI 290 (929)
Q Consensus 215 ~~~~~v~~~v~~----~~~~~hr~iLaa~S~~F~~mf~~~~~e~~~~~i~~~~~~~~~~~~~~~l~~~Yt~~~~~~~~~~ 290 (929)
+...||+|+|+| ++|+|||.||+++|+||++||+++|.|+. ..|+| +++++++|+.+|+|+|||+++ ++.++
T Consensus 6 ~~~~Dv~l~v~~~~~~~~~~~Hk~iLa~~S~~F~~~f~~~~~e~~-~~i~l--~~~~~~~f~~~l~~iYt~~~~-~~~~~ 81 (109)
T 2vkp_A 6 ELMADVHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDLAEVK-SEIHI--PDVEPAAFLILLKYMYSDEID-LEADT 81 (109)
T ss_dssp CTTCCEEEEESSTTSCEEEEECHHHHHHHCHHHHHHHC------C-CEEEE--TTSCHHHHHHHHHHHHHCCCC-CCTTT
T ss_pred CCcccEEEEECCCCCcEEEEeeHHHHHHcCHHHHHHhcCCcccCC-CeEEe--CCCCHHHHHHHHHHHcCCCcc-CCHHH
Confidence 344459999998 89999999999999999999999999998 99999 999999999999999999999 99999
Q ss_pred HHHHHHHhchhChHhHHHHHHHHHHhhc
Q 002379 291 VLELLSFANRFCCEEMKSACDAHLASLV 318 (929)
Q Consensus 291 ~~~ll~~A~~~~~~~l~~~C~~~l~~~~ 318 (929)
+.+++.+|++|+++.|+..|+++|.+.+
T Consensus 82 ~~~ll~~A~~~~~~~L~~~c~~~l~~~l 109 (109)
T 2vkp_A 82 VLATLYAAKKYIVPALAKACVNFLETSL 109 (109)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHhhC
Confidence 9999999999999999999999998764
No 42
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.86 E-value=1.2e-19 Score=208.59 Aligned_cols=354 Identities=14% Similarity=-0.004 Sum_probs=258.5
Q ss_pred HHHHHhhhh--HHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCH---HHHHHHHHHHhcccCCHhHHHHHHHHHHHhc--
Q 002379 490 ERSLYNLGR--EKIVDLNYASELDPTLSFPYKYRAVAKMEEGQI---RAAISEIDRIIVFKLSVDCLELRAWLFIAAD-- 562 (929)
Q Consensus 490 ~~~l~~~~~--~Ai~~~~kal~l~P~~~~a~~~~a~~~~~~g~~---~~A~~~~~~al~~~~~~~~~~~~a~~~~~~g-- 562 (929)
+..++..++ +|+..|+++.+. .++.+++.+|.++...|+. ++|+..|+++++. ++..++.+|.++...+
T Consensus 10 a~~~~~~g~~~~A~~~~~~aa~~--g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~--~~~A~~~Lg~~~~~~~~~ 85 (452)
T 3e4b_A 10 ANEALKRGDTVTAQQNYQQLAEL--GYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT--SPRAQARLGRLLAAKPGA 85 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--TCCTGGGTCC------------------------------CHHHHHHHHHTC--C
T ss_pred HHHHHhCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC--CHHHHHHHHHHHHhCCCC
Confidence 334444444 899999998765 5788999999999999998 9999999999966 7888999999666654
Q ss_pred ---cHHHHHHHHHHHHhhcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCC
Q 002379 563 ---DYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGK 639 (929)
Q Consensus 563 ---~~~~A~~~~~~al~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~~p~~ 639 (929)
++++|+..|+++++. +++ .+...+|.++...+...++... +..+.++.. +.+
T Consensus 86 ~~~~~~~A~~~~~~Aa~~--g~~------~A~~~Lg~~y~~~~~~~~~~~a---------------~~~~~~a~~--~g~ 140 (452)
T 3e4b_A 86 TEAEHHEAESLLKKAFAN--GEG------NTLIPLAMLYLQYPHSFPNVNA---------------QQQISQWQA--AGY 140 (452)
T ss_dssp CHHHHHHHHHHHHHHHHT--TCS------SCHHHHHHHHHHCGGGCTTCCH---------------HHHHHHHHH--HTC
T ss_pred CCcCHHHHHHHHHHHHHC--CCH------HHHHHHHHHHHhCCCCCCCHHH---------------HHHHHHHHH--CCC
Confidence 899999999999984 445 5677789888776665544222 222234333 456
Q ss_pred hHHHHHHHHHHHHhcCHH----HHHHHHHHHHhcCCchHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhccchHHHHH
Q 002379 640 SFLRFRQSLLLLRLNCQK----AAMRCLRLARNHSSSEHERLVYEGWILYDTG---HREEALSRAEKSISIERTFEAFFL 712 (929)
Q Consensus 640 ~~~~~~lg~~~~~~g~~~----~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g---~~~eA~~~~~~al~~~p~~~~~~~ 712 (929)
+.+++.+|.+|...+.++ .+...++.+...+|. +++.+|.+|...| ++++|+..|+++.+..|..
T Consensus 141 ~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~---a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~----- 212 (452)
T 3e4b_A 141 PEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDI---CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVT----- 212 (452)
T ss_dssp TTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTT---HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSC-----
T ss_pred HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHH---HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHH-----
Confidence 889999999999998554 444455555555544 9999999999999 9999999999999988766
Q ss_pred HHHHHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHc----CCHHHHHHHHHHHHcCCCHHHHHHHHH
Q 002379 713 KAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVEC----GKLDQAENCYINALDIKHTRAHQGLAR 788 (929)
Q Consensus 713 l~~~l~~~~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~----g~~~eA~~~~~~al~~~~~~a~~~la~ 788 (929)
+..++++|.+|... +++++|+.+|+++. .+++.+++++|.
T Consensus 213 -----------------------------------a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g~~~a~~~Lg~ 256 (452)
T 3e4b_A 213 -----------------------------------AQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PGYPASWVSLAQ 256 (452)
T ss_dssp -----------------------------------HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GGSTHHHHHHHH
T ss_pred -----------------------------------HHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CCCHHHHHHHHH
Confidence 33346677777554 79999999999999 888999999999
Q ss_pred H-H--HHhCCHHHHHHHHHHHHHHccCCHHHHHHHh---hhC-----CHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHh-
Q 002379 789 V-Y--YLKNELKAAYDEMTKLLEKAQYSASAFEKRS---EYS-----DREMAKNDLNMATQLDPLRTYPYRYRAAVLMD- 856 (929)
Q Consensus 789 ~-~--~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg---~~g-----~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~- 856 (929)
+ + ...+++++|+..|+++.+. .++.+++.+| ..| ++++|+.+|+++. +.++.+++++|.+|..
T Consensus 257 ~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G 331 (452)
T 3e4b_A 257 LLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYYEGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRG 331 (452)
T ss_dssp HHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTT
T ss_pred HHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCC
Confidence 9 4 5789999999999999865 5888888888 345 9999999999999 8999999999999887
Q ss_pred ---cCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHH----cCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHhhh
Q 002379 857 ---DQKEVEAVEELSKAIAFKPDLQMLHLRAAFYES----IGDLTSAIRDSQAALCLDPNHMETLDLYNRARDQA 924 (929)
Q Consensus 857 ---~g~~~eA~~~l~kal~~~p~~~~~~~la~~~~~----~g~~~~A~~~~~~al~l~P~~~~a~~~~~~l~~~~ 924 (929)
..++++|+.+|+++.+.. +....+.+|.+|.. ..|..+|..+|++|.+.. ++++...+..+....
T Consensus 332 ~g~~~d~~~A~~~~~~Aa~~g-~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g--~~~a~~~l~~l~~~~ 403 (452)
T 3e4b_A 332 YLGKVYPQKALDHLLTAARNG-QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD--TPEANDLATQLEAPL 403 (452)
T ss_dssp TTSSCCHHHHHHHHHHHHTTT-CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC--CHHHHHHHHHHHTTC
T ss_pred CCCCcCHHHHHHHHHHHHhhC-hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHhC
Confidence 449999999999998753 33455688998885 459999999999999875 467777777776543
No 43
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.86 E-value=3.1e-20 Score=195.29 Aligned_cols=241 Identities=12% Similarity=0.049 Sum_probs=204.8
Q ss_pred CChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccCCHhHHHHHHHHHHHhccHHHHHHHHHHHHhhcCCch-hhhccccHH
Q 002379 513 TLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLALESNYM-MFHGRVSGD 591 (929)
Q Consensus 513 ~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~~~a~ 591 (929)
+.+..+..+|.++...|++++|+..|+++++...++..+..+|.++...|++++|+..++++++..|++. .......++
T Consensus 3 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 3 SMADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 3467899999999999999999999999998777788899999999999999999999999999988763 111112677
Q ss_pred HHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Q 002379 592 HLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSS 671 (929)
Q Consensus 592 ~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p 671 (929)
..++.++...|++++|...+ ++++..+|. +.++...|++++|+..+++++..+|
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~------------------~~a~~~~~~--------~~~~~~~~~~~~a~~~~~~~~~~~~ 136 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYY------------------QKSLTEHRT--------ADILTKLRNAEKELKKAEAEAYVNP 136 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHH------------------HHHHHHCCC--------HHHHHHHHHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHcccHHHHHHHH------------------HHHHhcCch--------hHHHHHHhHHHHHHHHHHHHHHcCc
Confidence 78889999999999886655 888888776 4667788889999999999999999
Q ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHH
Q 002379 672 SEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQAL 751 (929)
Q Consensus 672 ~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~l~~~l~~~~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~ 751 (929)
.++.++..+|.++...|++++|+..|++++..+|++ ..++
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~----------------------------------------~~~~ 176 (258)
T 3uq3_A 137 EKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED----------------------------------------ARGY 176 (258)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----------------------------------------HHHH
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCccc----------------------------------------HHHH
Confidence 999999999999999999999999999999888876 4557
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc------cCCHHHHHH
Q 002379 752 NNLGSIYVECGKLDQAENCYINALDI--KHTRAHQGLARVYYLKNELKAAYDEMTKLLEKA------QYSASAFEK 819 (929)
Q Consensus 752 ~~lg~~~~~~g~~~eA~~~~~~al~~--~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~ 819 (929)
..+|.++...|++++|+..|+++++. +.+.++..+|.++...|++++|+..++++++.. |++..++..
T Consensus 177 ~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~ 252 (258)
T 3uq3_A 177 SNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQL 252 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHH
Confidence 88888899999999999999999887 456788999999999999999999999999888 665555443
No 44
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A
Probab=99.86 E-value=9.5e-22 Score=181.39 Aligned_cols=99 Identities=23% Similarity=0.252 Sum_probs=88.8
Q ss_pred cCCCCCCEEEEEcCeEEEeehhHHhccCHHHHHHhcCCCCcCCCCeeEecCCCCCHHHHHHHhhhHccCCCCCCChhHHH
Q 002379 213 SLEEDDSVTFCVRDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFCPGIVL 292 (929)
Q Consensus 213 ~~~~~~~v~~~v~~~~~~~hr~iLaa~S~~F~~mf~~~~~e~~~~~i~~~~~~~~~~~~~~~l~~~Yt~~~~~~~~~~~~ 292 (929)
.++...||+|+|+|++|+|||+||+++|+||++||.++|.|+....|++ +++++++|+.+|+|+|||+++ ++.+++.
T Consensus 21 ~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~~F~~~f~~~~~e~~~~~i~l--~~~~~~~f~~ll~~~Yt~~~~-~~~~~~~ 97 (120)
T 2if5_A 21 TQGLLCDVVILVEGREFPTHRSVLAACSQYFKKLFTSGAVVDQQNVYEI--DFVSAEALTALMDFAYTATLT-VSTANVG 97 (120)
T ss_dssp HTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHC-----CCSEEEC--CSSCHHHHHHHHHHHHHSCCC-CCGGGHH
T ss_pred hcCCCCCeEEEECCEEEeHHHHHHHHhCHHHHHHhcCCccccCCceEEe--CCCCHHHHHHHHHHHcCCCCc-cCHHHHH
Confidence 3344445999999999999999999999999999999999999999999 999999999999999999999 9999999
Q ss_pred HHHHHhchhChHhHHHHHHHHH
Q 002379 293 ELLSFANRFCCEEMKSACDAHL 314 (929)
Q Consensus 293 ~ll~~A~~~~~~~l~~~C~~~l 314 (929)
+++.+|++|+++.|+..|+++|
T Consensus 98 ~ll~~A~~~~i~~L~~~C~~~L 119 (120)
T 2if5_A 98 DILSAARLLEIPAVSHVCADLL 119 (120)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHh
Confidence 9999999999999999999987
No 45
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.86 E-value=4.2e-20 Score=199.25 Aligned_cols=269 Identities=13% Similarity=0.054 Sum_probs=154.6
Q ss_pred HHHHHhCCHHHHHHHHHHHhcccCC--HhHHHHHHHHHHHhccHHHHHHHHHHHHhhcCCchhhhccccHHHHHHHHHHh
Q 002379 523 VAKMEEGQIRAAISEIDRIIVFKLS--VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHH 600 (929)
Q Consensus 523 ~~~~~~g~~~~A~~~~~~al~~~~~--~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~ll~~~~~~ 600 (929)
...+..|+|..|+..+++.....|. .+....++.+|+.+|++++|+..++.. +|... .++..++..+..
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~---~~~~~------~a~~~la~~~~~ 77 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS---SAPEL------QAVRMFAEYLAS 77 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT---SCHHH------HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc---CChhH------HHHHHHHHHHcC
Confidence 3456677777777777776655542 234566777777777777777655431 22222 333344444444
Q ss_pred hcccchHHHHHHhhhccccccccccHHHHHHHHhc--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHH
Q 002379 601 VRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLIN--DPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLV 678 (929)
Q Consensus 601 ~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~ 678 (929)
.+++++|...+ ++++.. +|+++.+++.+|.++...|++++|+..+++ |.++.++.
T Consensus 78 ~~~~~~A~~~l------------------~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~ 134 (291)
T 3mkr_A 78 HSRRDAIVAEL------------------DREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMA 134 (291)
T ss_dssp STTHHHHHHHH------------------HHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHH
T ss_pred CCcHHHHHHHH------------------HHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHH
Confidence 44444442222 444433 344555555555555555555555554444 44444445
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHH
Q 002379 679 YEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIY 758 (929)
Q Consensus 679 ~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~l~~~l~~~~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~ 758 (929)
.+|.++...|++++|+..++++++.+|+.
T Consensus 135 ~l~~~~~~~g~~~~A~~~l~~~~~~~p~~--------------------------------------------------- 163 (291)
T 3mkr_A 135 MTVQILLKLDRLDLARKELKKMQDQDEDA--------------------------------------------------- 163 (291)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------------------------------------------
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCcCc---------------------------------------------------
Confidence 55555555555555555555544444433
Q ss_pred HHcCCHHHHHHHHHHHHcCCCHHHHHHHHHH----HHHhCCHHHHHHHHHHHHHHccCCHHHHHHHh----hhCCHHHHH
Q 002379 759 VECGKLDQAENCYINALDIKHTRAHQGLARV----YYLKNELKAAYDEMTKLLEKAQYSASAFEKRS----EYSDREMAK 830 (929)
Q Consensus 759 ~~~g~~~eA~~~~~~al~~~~~~a~~~la~~----~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg----~~g~~~~A~ 830 (929)
....++.. +...|++++|+..|+++++..|+++.++..+| ..|++++|+
T Consensus 164 -----------------------~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~ 220 (291)
T 3mkr_A 164 -----------------------TLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAE 220 (291)
T ss_dssp -----------------------HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred -----------------------HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH
Confidence 22222211 22235566666666666666666666666555 456666666
Q ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHH-HHHHHHHHHhcCCCchHHHHHHHHHHHcCCHHHHHHHH
Q 002379 831 NDLNMATQLDPLRTYPYRYRAAVLMDDQKEVE-AVEELSKAIAFKPDLQMLHLRAAFYESIGDLTSAIRDS 900 (929)
Q Consensus 831 ~~~~~al~l~p~~~~~~~~la~~~~~~g~~~e-A~~~l~kal~~~p~~~~~~~la~~~~~~g~~~~A~~~~ 900 (929)
..|+++++++|+++.++.++|.++...|++++ +.++++++++++|+++.... ...+.+.+++|...|
T Consensus 221 ~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d---~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 221 GVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKE---YRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHH---HHHHHHHHHHHHHHc
Confidence 66677777777788888888999999998876 56888999999999986653 244455566655544
No 46
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.86 E-value=2.4e-20 Score=210.44 Aligned_cols=305 Identities=15% Similarity=0.089 Sum_probs=220.7
Q ss_pred ChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccC-C----HhHHHHHHHHHHHhccHHHHHHHHHHHHhhcCCchhhhccc
Q 002379 514 LSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-S----VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRV 588 (929)
Q Consensus 514 ~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~----~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 588 (929)
....+..+|..+...|++++|+..|++++...| + ...+..+|.++...|++++|+..+++++.+.+.........
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 87 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 87 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence 445566667777777777777777777766655 2 23466666677777777777777776665532221111112
Q ss_pred cHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCC------ChHHHHHHHHHHHHhcC-------
Q 002379 589 SGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPG------KSFLRFRQSLLLLRLNC------- 655 (929)
Q Consensus 589 ~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~~p~------~~~~~~~lg~~~~~~g~------- 655 (929)
.++..++.++...|++++|..++ .+++...|. .+.++..+|.++...|+
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~------------------~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~ 149 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCC------------------QRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGP 149 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHH------------------HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC----
T ss_pred HHHHHHHHHHHHcCCHHHHHHHH------------------HHHHHHHHhcccccchHHHHHHHHHHHHHcCCccccccc
Confidence 55566666666677777665444 455444332 24578899999999999
Q ss_pred -------------HHHHHHHHHHHHhc------CCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch-HHHHHHHH
Q 002379 656 -------------QKAAMRCLRLARNH------SSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAY 715 (929)
Q Consensus 656 -------------~~~A~~~l~~al~~------~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~~~~~l~~ 715 (929)
+++|+..+++++++ .|....++..+|.++...|++++|+..+++++++.|.. ...
T Consensus 150 ~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----- 224 (406)
T 3sf4_A 150 QDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKA----- 224 (406)
T ss_dssp ---CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHH-----
T ss_pred chhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcH-----
Confidence 99999999999876 34456789999999999999999999999999887654 100
Q ss_pred HHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC----CC----HHHHHHHH
Q 002379 716 ILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI----KH----TRAHQGLA 787 (929)
Q Consensus 716 ~l~~~~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~----~~----~~a~~~la 787 (929)
....++.++|.++...|++++|+.+|++++.+ .+ ..++..+|
T Consensus 225 ------------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 274 (406)
T 3sf4_A 225 ------------------------------AERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLG 274 (406)
T ss_dssp ------------------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ------------------------------HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHH
Confidence 00346889999999999999999999999987 11 45889999
Q ss_pred HHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHhhhCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHH
Q 002379 788 RVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEEL 867 (929)
Q Consensus 788 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l 867 (929)
.++...|++++|+..++++++..+..... +....++..+|.++...|++++|+..+
T Consensus 275 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~ 330 (406)
T 3sf4_A 275 NTYTLLQDYEKAIDYHLKHLAIAQELNDR------------------------IGEGRACWSLGNAYTALGNHDQAMHFA 330 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCH------------------------HHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHhCcHHHHHHHHHHHHHHHHhcCCc------------------------HHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999999999999876543211 112456788999999999999999999
Q ss_pred HHHHhcCCCc------h-HHHHHHHHHHHcCCHHH
Q 002379 868 SKAIAFKPDL------Q-MLHLRAAFYESIGDLTS 895 (929)
Q Consensus 868 ~kal~~~p~~------~-~~~~la~~~~~~g~~~~ 895 (929)
++++++.+.. . .+..+|.++...|+...
T Consensus 331 ~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 331 EKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 9999874432 1 23367889988887643
No 47
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.85 E-value=3.6e-20 Score=208.99 Aligned_cols=289 Identities=17% Similarity=0.114 Sum_probs=209.5
Q ss_pred HhHHHHHHHHHHHhccHHHHHHHHHHHHhhcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHH
Q 002379 548 VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLA 627 (929)
Q Consensus 548 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~ 627 (929)
...+..+|..+...|++++|+..|+++++..|+++..
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~------------------------------------------- 45 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKT------------------------------------------- 45 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHH-------------------------------------------
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHH-------------------------------------------
Confidence 4456777888888888888888888888887776511
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhc------CCchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002379 628 VINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNH------SSSEHERLVYEGWILYDTGHREEALSRAEKSI 701 (929)
Q Consensus 628 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~------~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al 701 (929)
...++..+|.++...|++++|+..+++++.. .|....++..+|.++...|++++|+..+++++
T Consensus 46 -----------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 114 (406)
T 3sf4_A 46 -----------LSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHL 114 (406)
T ss_dssp -----------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -----------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 1245778899999999999999999998876 34557788999999999999999999999999
Q ss_pred hhccch-HHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCC-----------------
Q 002379 702 SIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGK----------------- 763 (929)
Q Consensus 702 ~~~p~~-~~~~~l~~~l~~~~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~----------------- 763 (929)
.+.|.. .. . ....++..+|.++...|+
T Consensus 115 ~~~~~~~~~-~----------------------------------~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a 159 (406)
T 3sf4_A 115 DISRELNDK-V----------------------------------GEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEV 159 (406)
T ss_dssp HHHHHHTCH-H----------------------------------HHHHHHHHHHHHHHHHHHTCC-------CCCCHHH
T ss_pred HHHHhcccc-c----------------------------------chHHHHHHHHHHHHHcCCcccccccchhhhhhhhH
Confidence 887654 10 0 002345666666666666
Q ss_pred ---HHHHHHHHHHHHcC----CC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHH------HHHHHh----h
Q 002379 764 ---LDQAENCYINALDI----KH----TRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSAS------AFEKRS----E 822 (929)
Q Consensus 764 ---~~eA~~~~~~al~~----~~----~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~lg----~ 822 (929)
+++|+..|++++.+ .+ ..++..+|.++...|++++|+..++++++..+.... ++..+| .
T Consensus 160 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 239 (406)
T 3sf4_A 160 RDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIF 239 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Confidence 66666666666654 11 135666666666666666666666666666554332 445555 4
Q ss_pred hCCHHHHHHHHHHHHhcCCCC------cHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc------h-HHHHHHHHHHH
Q 002379 823 YSDREMAKNDLNMATQLDPLR------TYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDL------Q-MLHLRAAFYES 889 (929)
Q Consensus 823 ~g~~~~A~~~~~~al~l~p~~------~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~------~-~~~~la~~~~~ 889 (929)
.|++++|+..+++++++.|.. ..++..+|.++...|++++|+..+++++++.+.. . .+..+|.+|..
T Consensus 240 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~ 319 (406)
T 3sf4_A 240 LGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTA 319 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Confidence 566666776676666665543 6688899999999999999999999999875533 1 33477999999
Q ss_pred cCCHHHHHHHHHHHhccCCC------CHHHHHHHHHHHhhhh
Q 002379 890 IGDLTSAIRDSQAALCLDPN------HMETLDLYNRARDQAS 925 (929)
Q Consensus 890 ~g~~~~A~~~~~~al~l~P~------~~~a~~~~~~l~~~~~ 925 (929)
+|++++|+.+|++++++.+. ...++..++.+.....
T Consensus 320 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 361 (406)
T 3sf4_A 320 LGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLG 361 (406)
T ss_dssp HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhh
Confidence 99999999999999998433 3556666666655444
No 48
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.85 E-value=3.6e-20 Score=209.99 Aligned_cols=274 Identities=20% Similarity=0.155 Sum_probs=185.9
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHH
Q 002379 550 CLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVI 629 (929)
Q Consensus 550 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~ 629 (929)
.+..+|..+...|++++|+..|+++++..|++...
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~--------------------------------------------- 84 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRT--------------------------------------------- 84 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHH---------------------------------------------
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhH---------------------------------------------
Confidence 35567888888888888888888888887776611
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhc------CCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 002379 630 NQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNH------SSSEHERLVYEGWILYDTGHREEALSRAEKSISI 703 (929)
Q Consensus 630 ~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~------~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~ 703 (929)
...++..+|.++...|++++|+..++++++. .|....++..+|.++...|++++|+..|++++.+
T Consensus 85 ---------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 155 (411)
T 4a1s_A 85 ---------LSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTL 155 (411)
T ss_dssp ---------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 1235677888888889999999999888877 5666788899999999999999999999999887
Q ss_pred ccch-HHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCC-----------------HH
Q 002379 704 ERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGK-----------------LD 765 (929)
Q Consensus 704 ~p~~-~~~~~l~~~l~~~~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~-----------------~~ 765 (929)
.+.. . .. ....++.++|.++...|+ ++
T Consensus 156 ~~~~~~------------------------~~-----------~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~ 200 (411)
T 4a1s_A 156 ARQLGD------------------------RL-----------SEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALT 200 (411)
T ss_dssp HHHHTC------------------------HH-----------HHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHH
T ss_pred HHHhhc------------------------hH-----------HHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHH
Confidence 4321 0 00 001234445555555555 55
Q ss_pred HHHHHHHHHHcC----CC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHH------HHHHHh----hhCCHH
Q 002379 766 QAENCYINALDI----KH----TRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSAS------AFEKRS----EYSDRE 827 (929)
Q Consensus 766 eA~~~~~~al~~----~~----~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~lg----~~g~~~ 827 (929)
+|+.+|++++++ .. ..++..+|.++...|++++|+..++++++..+.... ++..+| ..|+++
T Consensus 201 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 280 (411)
T 4a1s_A 201 RAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFE 280 (411)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHH
Confidence 555555555443 11 124455555555555555555555555554443221 333333 345555
Q ss_pred HHHHHHHHHHhcCCCC------cHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCch-------HHHHHHHHHHHcCCHH
Q 002379 828 MAKNDLNMATQLDPLR------TYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQ-------MLHLRAAFYESIGDLT 894 (929)
Q Consensus 828 ~A~~~~~~al~l~p~~------~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~-------~~~~la~~~~~~g~~~ 894 (929)
+|+..+++++.+.+.. ..++..+|.++...|++++|+..+++++++.++.. .+..+|.+|..+|+++
T Consensus 281 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 360 (411)
T 4a1s_A 281 DAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHE 360 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHH
Confidence 5555555555544422 56788999999999999999999999998765431 3447799999999999
Q ss_pred HHHHHHHHHhccCCCCHH
Q 002379 895 SAIRDSQAALCLDPNHME 912 (929)
Q Consensus 895 ~A~~~~~~al~l~P~~~~ 912 (929)
+|+.+|++++++.+....
T Consensus 361 ~A~~~~~~al~~~~~~~~ 378 (411)
T 4a1s_A 361 RALKYAEQHLQLAXXXXX 378 (411)
T ss_dssp HHHHHHHHHHHHCCHHHH
T ss_pred HHHHHHHHHHHHHhhccc
Confidence 999999999999876443
No 49
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.84 E-value=4.7e-19 Score=189.05 Aligned_cols=229 Identities=15% Similarity=0.097 Sum_probs=199.5
Q ss_pred CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhccchHHHH
Q 002379 636 DPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYD----TGHREEALSRAEKSISIERTFEAFF 711 (929)
Q Consensus 636 ~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~----~g~~~eA~~~~~~al~~~p~~~~~~ 711 (929)
+|+++.+++.+|.++...|++++|+..|+++++ |+++.++..+|.++.. .+++++|+..|+++++.+ +
T Consensus 2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~---- 73 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--Y---- 73 (273)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--C----
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--C----
Confidence 578899999999999999999999999999999 7778999999999999 999999999999998764 2
Q ss_pred HHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHH----cCCHHHHHHHHHHHHcCCCHHHHHHHH
Q 002379 712 LKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVE----CGKLDQAENCYINALDIKHTRAHQGLA 787 (929)
Q Consensus 712 ~l~~~l~~~~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~----~g~~~eA~~~~~~al~~~~~~a~~~la 787 (929)
..+++++|.++.. .+++++|+.+|+++++.+++.++..+|
T Consensus 74 ------------------------------------~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg 117 (273)
T 1ouv_A 74 ------------------------------------SNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLG 117 (273)
T ss_dssp ------------------------------------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ------------------------------------HHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHH
Confidence 3457788888888 899999999999999888888999999
Q ss_pred HHHHH----hCCHHHHHHHHHHHHHHccCCHHHHHHHh----h----hCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Q 002379 788 RVYYL----KNELKAAYDEMTKLLEKAQYSASAFEKRS----E----YSDREMAKNDLNMATQLDPLRTYPYRYRAAVLM 855 (929)
Q Consensus 788 ~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~lg----~----~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~ 855 (929)
.+|.. .+++++|+..|+++++.. +..++..+| . .+++++|+..|+++++.+ ++.++..+|.+|.
T Consensus 118 ~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~ 193 (273)
T 1ouv_A 118 GIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK--DSPGCFNAGNMYH 193 (273)
T ss_dssp HHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHH
T ss_pred HHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHH
Confidence 99998 899999999999998865 566666666 2 688999999999998874 5789999999999
Q ss_pred h----cCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHH----cCCHHHHHHHHHHHhccCCCCHHH
Q 002379 856 D----DQKEVEAVEELSKAIAFKPDLQMLHLRAAFYES----IGDLTSAIRDSQAALCLDPNHMET 913 (929)
Q Consensus 856 ~----~g~~~eA~~~l~kal~~~p~~~~~~~la~~~~~----~g~~~~A~~~~~~al~l~P~~~~a 913 (929)
. .+++++|+..|+++++..| ....+.+|.+|.. .+++++|+.+|+++++++|++...
T Consensus 194 ~g~~~~~~~~~A~~~~~~a~~~~~-~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~ 258 (273)
T 1ouv_A 194 HGEGATKNFKEALARYSKACELEN-GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGACD 258 (273)
T ss_dssp HTCSSCCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHHH
T ss_pred cCCCCCccHHHHHHHHHHHHhCCC-HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHHHH
Confidence 9 9999999999999999876 4556688999999 999999999999999999875443
No 50
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus}
Probab=99.84 E-value=1.5e-21 Score=184.48 Aligned_cols=104 Identities=17% Similarity=0.167 Sum_probs=95.9
Q ss_pred CCCCCCEEEEEcCeEEEeehhHHhccCHHHHHHhcCCCCcCCCCeeEecCC-CCCHHHHHHHhhhHccCCCCCCChhHHH
Q 002379 214 LEEDDSVTFCVRDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHD-GVSVEGLRAVEVYTRTSRVDLFCPGIVL 292 (929)
Q Consensus 214 ~~~~~~v~~~v~~~~~~~hr~iLaa~S~~F~~mf~~~~~e~~~~~i~~~~~-~~~~~~~~~~l~~~Yt~~~~~~~~~~~~ 292 (929)
++...||+|+|+|++|+|||+|||++|+||++||.++|.|+ ..|++ + ++++.+|+.+|+|+|||+++ ++.+++.
T Consensus 33 ~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~~e~--~~i~l--~~~v~~~~~~~lL~~~Ytg~~~-i~~~~v~ 107 (138)
T 2z8h_A 33 KDVLCDVTVLVEGQRFRAHRSVLAACSSYFHSRIVGQTDAE--LTVTL--PEEVTVKGFEPLIQFAYTAKLI-LSKDNVD 107 (138)
T ss_dssp HTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTCCCTT--EEEEC--CTTSCHHHHHHHHHHHHHSCCC-CCTTTHH
T ss_pred hCCCcCeEEEECCEEEechHHHHHHcCHHHHHHHhcCCCCC--ceEEe--CCCCCHHHHHHHHHHhcCCCcc-cCHHHHH
Confidence 34444599999999999999999999999999999999874 47888 5 89999999999999999999 9999999
Q ss_pred HHHHHhchhChHhHHHHHHHHHHhhcCChhh
Q 002379 293 ELLSFANRFCCEEMKSACDAHLASLVGDIED 323 (929)
Q Consensus 293 ~ll~~A~~~~~~~l~~~C~~~l~~~~~~~~n 323 (929)
+|+.+|++|+++.|+..|+++|.+.++ .+|
T Consensus 108 ~ll~~A~~~~i~~L~~~C~~~l~~~l~-~sn 137 (138)
T 2z8h_A 108 EVCRCVEFLSVHNIEESCFQFLKFKFL-DST 137 (138)
T ss_dssp HHHHHHHHHTCGGGHHHHHHHTTCCCS-CCC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhcc-ccc
Confidence 999999999999999999999999998 666
No 51
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.84 E-value=1.7e-17 Score=201.65 Aligned_cols=286 Identities=15% Similarity=0.062 Sum_probs=211.7
Q ss_pred HHHHHHHhccHHHHHHHHHHHHhhcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHH
Q 002379 554 RAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQML 633 (929)
Q Consensus 554 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al 633 (929)
.|.++..+|.+++|...|+++- .+. ..+..++...++|++|.++. ++
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~----~~~---------~A~~VLie~i~nldrAiE~A------------------er-- 1101 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFD----VNT---------SAVQVLIEHIGNLDRAYEFA------------------ER-- 1101 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcC----CHH---------HHHHHHHHHHhhHHHHHHHH------------------Hh--
Confidence 5777888888888888888862 111 11233445677777775444 32
Q ss_pred hcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHH
Q 002379 634 INDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLK 713 (929)
Q Consensus 634 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~l 713 (929)
.+.+.+|+.+|.++...|++++|+..|.++ +++..+...|.++.+.|++++|+++|..+.+..++......+
T Consensus 1102 ---vn~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~L 1173 (1630)
T 1xi4_A 1102 ---CNEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETEL 1173 (1630)
T ss_pred ---cCCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHH
Confidence 367899999999999999999999999886 778899999999999999999999999999988765333458
Q ss_pred HHHHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Q 002379 714 AYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIKHTRAHQGLARVYYLK 793 (929)
Q Consensus 714 ~~~l~~~~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~~~a~~~la~~~~~~ 793 (929)
+.+|++.+ ++++ ++.+.+.... ..+..+|..+...|+|++|..+|.++ ..|..+|.++.++
T Consensus 1174 afaYAKl~-----------rlee-le~fI~~~n~-ad~~~iGd~le~eg~YeeA~~~Y~kA------~ny~rLA~tLvkL 1234 (1630)
T 1xi4_A 1174 IFALAKTN-----------RLAE-LEEFINGPNN-AHIQQVGDRCYDEKMYDAAKLLYNNV------SNFGRLASTLVHL 1234 (1630)
T ss_pred HHHHHhhc-----------CHHH-HHHHHhCCCH-HHHHHHHHHHHhcCCHHHHHHHHHhh------hHHHHHHHHHHHh
Confidence 88888775 4442 3333333333 45667999999999999999999986 5788999999999
Q ss_pred CCHHHHHHHHHHHHHHccCCHHHHHHHh----hhCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHH
Q 002379 794 NELKAAYDEMTKLLEKAQYSASAFEKRS----EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSK 869 (929)
Q Consensus 794 g~~~~A~~~~~~al~~~p~~~~~~~~lg----~~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~k 869 (929)
|++++|++.++++ .+..+|...+ ..|++..|..+... +.. +++-+..++..|...|.+++|+..+++
T Consensus 1235 ge~q~AIEaarKA-----~n~~aWkev~~acve~~Ef~LA~~cgl~-Iiv---~~deLeeli~yYe~~G~feEAI~LlE~ 1305 (1630)
T 1xi4_A 1235 GEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVV---HADELEELINYYQDRGYFEELITMLEA 1305 (1630)
T ss_pred CCHHHHHHHHHHh-----CCHHHHHHHHHHHhhhhHHHHHHHHHHh-hhc---CHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999999988 4456666555 45667777776653 332 344555777778888888888888888
Q ss_pred HHhcCCCchHHH-HHHHHHHH--cCCHHHHHHHHHHHhccCC
Q 002379 870 AIAFKPDLQMLH-LRAAFYES--IGDLTSAIRDSQAALCLDP 908 (929)
Q Consensus 870 al~~~p~~~~~~-~la~~~~~--~g~~~~A~~~~~~al~l~P 908 (929)
++.++|.+...+ .+|.+|.+ .++..++++.|...+.+.|
T Consensus 1306 aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k 1347 (1630)
T 1xi4_A 1306 ALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPK 1347 (1630)
T ss_pred HhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccch
Confidence 888877665544 45555544 5677777777777777766
No 52
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.84 E-value=6.4e-20 Score=200.42 Aligned_cols=273 Identities=18% Similarity=0.133 Sum_probs=184.5
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHH
Q 002379 550 CLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVI 629 (929)
Q Consensus 550 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~ 629 (929)
.+...|..+...|++++|+..|+++++..|++...
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~--------------------------------------------- 41 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKT--------------------------------------------- 41 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHH---------------------------------------------
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHH---------------------------------------------
Confidence 45567888888888888888888888877776511
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhc------CCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 002379 630 NQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNH------SSSEHERLVYEGWILYDTGHREEALSRAEKSISI 703 (929)
Q Consensus 630 ~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~------~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~ 703 (929)
...++..+|.++...|++++|+..++++++. .|....++..+|.++...|++++|+..+++++++
T Consensus 42 ---------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 112 (338)
T 3ro2_A 42 ---------LSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDI 112 (338)
T ss_dssp ---------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 1245678888899999999999999998876 4455778899999999999999999999999987
Q ss_pred ccch-HHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCC-------------------
Q 002379 704 ERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGK------------------- 763 (929)
Q Consensus 704 ~p~~-~~~~~l~~~l~~~~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~------------------- 763 (929)
.+.. ... ....++..+|.++...|+
T Consensus 113 ~~~~~~~~-----------------------------------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 157 (338)
T 3ro2_A 113 SRELNDKV-----------------------------------GEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRN 157 (338)
T ss_dssp HHHTTCHH-----------------------------------HHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHH
T ss_pred HHHhcCch-----------------------------------HHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHH
Confidence 6644 100 001234455555555555
Q ss_pred -HHHHHHHHHHHHcC----CC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHH------HHHHHh----hhC
Q 002379 764 -LDQAENCYINALDI----KH----TRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSAS------AFEKRS----EYS 824 (929)
Q Consensus 764 -~~eA~~~~~~al~~----~~----~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~lg----~~g 824 (929)
+++|+..+++++.+ .+ ..++..+|.++...|++++|+..++++++..+.... ++..+| ..|
T Consensus 158 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g 237 (338)
T 3ro2_A 158 ALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLG 237 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcC
Confidence 55555555555443 11 124555555555555555555555555544333211 333333 345
Q ss_pred CHHHHHHHHHHHHhcCCCC------cHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCch-------HHHHHHHHHHHcC
Q 002379 825 DREMAKNDLNMATQLDPLR------TYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQ-------MLHLRAAFYESIG 891 (929)
Q Consensus 825 ~~~~A~~~~~~al~l~p~~------~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~-------~~~~la~~~~~~g 891 (929)
++++|+..+++++++.+.. ..++..+|.++...|++++|+..++++++..+... .+..+|.+|...|
T Consensus 238 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g 317 (338)
T 3ro2_A 238 EFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALG 317 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcC
Confidence 5555555555555544432 56788999999999999999999999998765431 3347799999999
Q ss_pred CHHHHHHHHHHHhccCCCCH
Q 002379 892 DLTSAIRDSQAALCLDPNHM 911 (929)
Q Consensus 892 ~~~~A~~~~~~al~l~P~~~ 911 (929)
++++|..+|++++++.++..
T Consensus 318 ~~~~A~~~~~~a~~~~~~~~ 337 (338)
T 3ro2_A 318 NHDQAMHFAEKHLEISREVG 337 (338)
T ss_dssp CHHHHHHHHHHHHHC-----
T ss_pred ChHHHHHHHHHHHHHHHhhc
Confidence 99999999999999987643
No 53
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens}
Probab=99.84 E-value=1.8e-21 Score=184.88 Aligned_cols=105 Identities=16% Similarity=0.251 Sum_probs=90.9
Q ss_pred hhhhccCCCCCC-EEEEEcCeEEEeehhHHhccCHHHHHHhcCCCCc--CCCCeeEecCCCCCHHHHHHHhhhHccCCCC
Q 002379 208 KFVCLSLEEDDS-VTFCVRDKEISFVRNKIASLSSPFKAMLYGGFVE--SKRKTIDFSHDGVSVEGLRAVEVYTRTSRVD 284 (929)
Q Consensus 208 ~~~~~~~~~~~~-v~~~v~~~~~~~hr~iLaa~S~~F~~mf~~~~~e--~~~~~i~~~~~~~~~~~~~~~l~~~Yt~~~~ 284 (929)
....+..++..+ |+|+|+|++|+|||+|||++|+||++||+++|.| +....|+| +++++++|+.+|+|+|||+++
T Consensus 37 ~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~mf~~~~~e~e~~~~~I~l--~~v~~~~f~~lL~fiYtg~~~ 114 (144)
T 2ppi_A 37 ALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIEL--EGISVMVMREILDYIFSGQIR 114 (144)
T ss_dssp HHHHTTC--CCCCEEEEETTEEEEECHHHHHHHCHHHHHHHHHCC-----CCCEEEC--CSSCHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHhcCCCcceEEEECCEEEehHHHHHHHcCHHHHHHHcCCCccccCCCcEEEe--CCCCHHHHHHHHHHHhCCCCC
Confidence 334444454444 9999999999999999999999999999999986 56778999 999999999999999999999
Q ss_pred CCChhHHHHHHHHhchhChHhHHHHHHHHHH
Q 002379 285 LFCPGIVLELLSFANRFCCEEMKSACDAHLA 315 (929)
Q Consensus 285 ~~~~~~~~~ll~~A~~~~~~~l~~~C~~~l~ 315 (929)
++.+++.+||.+|++|+++.|+..|+++|.
T Consensus 115 -i~~~~v~~ll~~A~~l~i~~L~~~C~~~L~ 144 (144)
T 2ppi_A 115 -LNEDTIQDVVQAADLLLLTDLKTLCCEFLE 144 (144)
T ss_dssp -CCTTTHHHHHHHHHHTTCHHHHHHHHTTC-
T ss_pred -CCHHHHHHHHHHHHHhCcHHHHHHHHHHhC
Confidence 999999999999999999999999998863
No 54
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Probab=99.84 E-value=6.4e-21 Score=177.66 Aligned_cols=106 Identities=14% Similarity=0.233 Sum_probs=95.2
Q ss_pred hhhhccCC-CCCCEEEEEcCeEEEeehhHHhccCHHHHHHhcCCCCcCCCCeeEecCCCCCHHHHHHHhhhHccCCCCCC
Q 002379 208 KFVCLSLE-EDDSVTFCVRDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLF 286 (929)
Q Consensus 208 ~~~~~~~~-~~~~v~~~v~~~~~~~hr~iLaa~S~~F~~mf~~~~~e~~~~~i~~~~~~~~~~~~~~~l~~~Yt~~~~~~ 286 (929)
....+..+ ...||+|+|+|++|+|||+|||++|+||++||.++|.| ....|+|+ +++++++|+.+|+|||||+++ +
T Consensus 19 ~l~~l~~~~~~~Dv~l~v~~~~~~aHk~iLaa~S~~F~~~f~~~~~e-~~~~i~l~-~~~~~~~f~~ll~~~Ytg~~~-~ 95 (127)
T 1r29_A 19 NLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKR-NLSVINLD-PEINPEGFNILLDFMYTSRLN-L 95 (127)
T ss_dssp HHHHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTSTTTT-TCSEEECC-TTSCHHHHHHHHHHHHHSCCC-C
T ss_pred HHHHHHhcCCCCCEEEEECCEEEehHHHHHHHhCHHHHHHhcCCccC-CCCEEEeC-CCCCHHHHHHHHHHHcCCCcC-c
Confidence 33334344 44459999999999999999999999999999999999 67788885 689999999999999999999 9
Q ss_pred ChhHHHHHHHHhchhChHhHHHHHHHHHHh
Q 002379 287 CPGIVLELLSFANRFCCEEMKSACDAHLAS 316 (929)
Q Consensus 287 ~~~~~~~ll~~A~~~~~~~l~~~C~~~l~~ 316 (929)
+.+++.+|+.+|++|+++.|+..|+++|.+
T Consensus 96 ~~~~~~~ll~~A~~~~i~~L~~~c~~~l~~ 125 (127)
T 1r29_A 96 REGNIMAVMATAMYLQMEHVVDTCRKFIKA 125 (127)
T ss_dssp CTTTHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 999999999999999999999999999975
No 55
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.84 E-value=1.4e-19 Score=205.20 Aligned_cols=290 Identities=13% Similarity=0.094 Sum_probs=225.3
Q ss_pred CChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccC-CH----hHHHHHHHHHHHhccHHHHHHHHHHHHhhcCCchhhhcc
Q 002379 513 TLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SV----DCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGR 587 (929)
Q Consensus 513 ~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~----~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 587 (929)
.....++.+|..+...|++++|+..|+++++..+ ++ ..+..+|.++...|++++|+..|++++++..........
T Consensus 46 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 125 (411)
T 4a1s_A 46 SMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGE 125 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHH
Confidence 3445667788888888888888888888887776 33 357778888888888888888888888763211111111
Q ss_pred ccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhc------CCCChHHHHHHHHHHHHhcC------
Q 002379 588 VSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLIN------DPGKSFLRFRQSLLLLRLNC------ 655 (929)
Q Consensus 588 ~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~------~p~~~~~~~~lg~~~~~~g~------ 655 (929)
..++..++.++...|++++|..++ .+++.. .|....++..+|.+|...|+
T Consensus 126 ~~~~~~l~~~~~~~g~~~~A~~~~------------------~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~ 187 (411)
T 4a1s_A 126 AKSSGNLGNTLKVMGRFDEAAICC------------------ERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRN 187 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHH------------------HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHH------------------HHHHHHHHHhhchHHHHHHHHHHHHHHHHcCccccccc
Confidence 266777888888888888886555 555555 45567789999999999999
Q ss_pred -----------HHHHHHHHHHHHhcC------CchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch-HHHHHHHHHH
Q 002379 656 -----------QKAAMRCLRLARNHS------SSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYIL 717 (929)
Q Consensus 656 -----------~~~A~~~l~~al~~~------p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~~~~~l~~~l 717 (929)
+++|+..+++++++. +....++..+|.++...|++++|+..+++++++.+.. ...
T Consensus 188 ~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~------- 260 (411)
T 4a1s_A 188 PGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRA------- 260 (411)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH-------
T ss_pred chhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcH-------
Confidence 999999999998764 3345688999999999999999999999999987754 100
Q ss_pred HhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcCC----C----HHHHHHHHHH
Q 002379 718 ADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIK----H----TRAHQGLARV 789 (929)
Q Consensus 718 ~~~~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~----~----~~a~~~la~~ 789 (929)
. ...++.++|.++...|++++|+..|++++.+. . ..++..+|.+
T Consensus 261 -----------------~-----------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 312 (411)
T 4a1s_A 261 -----------------A-----------ERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNT 312 (411)
T ss_dssp -----------------H-----------HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -----------------H-----------HHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 0 02458899999999999999999999999872 1 4688999999
Q ss_pred HHHhCCHHHHHHHHHHHHHHccCCHHHHHHHhhhCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHH
Q 002379 790 YYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSK 869 (929)
Q Consensus 790 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~k 869 (929)
+...|++++|+..+++++...+..... +....++..+|.++...|++++|+..|++
T Consensus 313 ~~~~g~~~~A~~~~~~al~~~~~~~~~------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 368 (411)
T 4a1s_A 313 YTLLHEFNTAIEYHNRHLAIAQELGDR------------------------IGEARACWSLGNAHSAIGGHERALKYAEQ 368 (411)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCH------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHCCCh------------------------HHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 999999999999999998875532110 11245778899999999999999999999
Q ss_pred HHhcCCCchH
Q 002379 870 AIAFKPDLQM 879 (929)
Q Consensus 870 al~~~p~~~~ 879 (929)
++++.+....
T Consensus 369 al~~~~~~~~ 378 (411)
T 4a1s_A 369 HLQLAXXXXX 378 (411)
T ss_dssp HHHHCCHHHH
T ss_pred HHHHHhhccc
Confidence 9998876543
No 56
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.83 E-value=2.2e-16 Score=191.89 Aligned_cols=403 Identities=10% Similarity=-0.008 Sum_probs=279.7
Q ss_pred hhHHHHhcccHHHHHHHHHHHHhcCcc------ccHHHHHHHHHHh--chHHHHHHHHHhhhccCCCchhhhHHHHHHhh
Q 002379 425 LGCVMFEREEYKDACYYFEAAADAGHI------YSLAGLARAKYKV--GQQYSAYKLINSIISEHKPTGWMYQERSLYNL 496 (929)
Q Consensus 425 lG~~~~~~g~y~~A~~~f~~al~~~~~------~~~a~la~~~~~~--g~a~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 496 (929)
....|...|++.+|++.|++++ ..|. +....+++...+. ++......+.. ... .-..|..+...
T Consensus 991 ~vKaf~~aglp~EaieLLEKiv-l~~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd----~~d---~~eIA~Iai~l 1062 (1630)
T 1xi4_A 991 TVKAFMTADLPNELIELLEKIV-LDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLD----NYD---APDIANIAISN 1062 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHHH-cCCCcccccHHHHHHHHHHHHHhChhhHHHHHHHhh----hcc---HHHHHHHHHhC
Confidence 5566779999999999999999 4333 1111233333222 22222222111 100 11134444444
Q ss_pred hh--HHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccCCHhHHHHHHHHHHHhccHHHHHHHHHHH
Q 002379 497 GR--EKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLAL 574 (929)
Q Consensus 497 ~~--~Ai~~~~kal~l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a 574 (929)
+. +|...|+++- .........+...+++++|++.++++. .+..|..+|.++...|++++|+..|.++
T Consensus 1063 glyEEAf~IYkKa~-------~~~~A~~VLie~i~nldrAiE~Aervn----~p~vWsqLAKAql~~G~~kEAIdsYiKA 1131 (1630)
T 1xi4_A 1063 ELFEEAFAIFRKFD-------VNTSAVQVLIEHIGNLDRAYEFAERCN----EPAVWSQLAKAQLQKGMVKEAIDSYIKA 1131 (1630)
T ss_pred CCHHHHHHHHHHcC-------CHHHHHHHHHHHHhhHHHHHHHHHhcC----CHHHHHHHHHHHHhCCCHHHHHHHHHhc
Confidence 43 8888888862 111112333447788888888888763 4778888888888888888888888775
Q ss_pred HhhcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHHHHhc
Q 002379 575 LALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLN 654 (929)
Q Consensus 575 l~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~lg~~~~~~g 654 (929)
+++ ..+..++..+...|+|++|..++ ..+.+..++ +.+...+|.+|.+++
T Consensus 1132 -----dD~------say~eVa~~~~~lGkyEEAIeyL------------------~mArk~~~e-~~Idt~LafaYAKl~ 1181 (1630)
T 1xi4_A 1132 -----DDP------SSYMEVVQAANTSGNWEELVKYL------------------QMARKKARE-SYVETELIFALAKTN 1181 (1630)
T ss_pred -----CCh------HHHHHHHHHHHHcCCHHHHHHHH------------------HHHHhhccc-ccccHHHHHHHHhhc
Confidence 555 55566788888888888886666 666665532 223335888888888
Q ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHHHHHhcCCCCCChHHHHHHH
Q 002379 655 CQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLL 734 (929)
Q Consensus 655 ~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~l~~~l~~~~~~~~~~~~a~~~~ 734 (929)
++++ ++.|- ..++ ...+..+|..+...|+|++|..+|.++ ..|..++.++...+ .+
T Consensus 1182 rlee-le~fI----~~~n-~ad~~~iGd~le~eg~YeeA~~~Y~kA-------~ny~rLA~tLvkLg-----------e~ 1237 (1630)
T 1xi4_A 1182 RLAE-LEEFI----NGPN-NAHIQQVGDRCYDEKMYDAAKLLYNNV-------SNFGRLASTLVHLG-----------EY 1237 (1630)
T ss_pred CHHH-HHHHH----hCCC-HHHHHHHHHHHHhcCCHHHHHHHHHhh-------hHHHHHHHHHHHhC-----------CH
Confidence 8774 44442 2333 455667888888888888888888886 24677788888777 67
Q ss_pred HHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCH
Q 002379 735 EEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIKHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSA 814 (929)
Q Consensus 735 e~Al~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 814 (929)
++|+++++++.. ..+|...+.++...|++..|..+... + ..+++.+..++..|...|.+++|+..+++++.+++.+.
T Consensus 1238 q~AIEaarKA~n-~~aWkev~~acve~~Ef~LA~~cgl~-I-iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~ 1314 (1630)
T 1xi4_A 1238 QAAVDGARKANS-TRTWKEVCFACVDGKEFRLAQMCGLH-I-VVHADELEELINYYQDRGYFEELITMLEAALGLERAHM 1314 (1630)
T ss_pred HHHHHHHHHhCC-HHHHHHHHHHHhhhhHHHHHHHHHHh-h-hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHh
Confidence 888887777743 47889999999999999999998774 2 25677777899999999999999999999999999988
Q ss_pred HHHHHHh------hhCCHHHHHHHHHHHHhcCC-----CCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----------
Q 002379 815 SAFEKRS------EYSDREMAKNDLNMATQLDP-----LRTYPYRYRAAVLMDDQKEVEAVEELSKAIAF---------- 873 (929)
Q Consensus 815 ~~~~~lg------~~g~~~~A~~~~~~al~l~p-----~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~---------- 873 (929)
..+..++ ..++..++++.|...+.+.| ..+..|..+..+|.+-|+++.|+...-.....
T Consensus 1315 gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~ 1394 (1630)
T 1xi4_A 1315 GMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDI 1394 (1630)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHH
Confidence 8888877 34677888899998888887 78889999999999999999999544333222
Q ss_pred --CCCchHHHHH-HHHHHHcCCHHHHHHHHHHHhc
Q 002379 874 --KPDLQMLHLR-AAFYESIGDLTSAIRDSQAALC 905 (929)
Q Consensus 874 --~p~~~~~~~l-a~~~~~~g~~~~A~~~~~~al~ 905 (929)
++.++.++.+ ..+|. +....++.++..++.
T Consensus 1395 i~kv~n~elyykai~Fyl--~~~P~~lndLl~~l~ 1427 (1630)
T 1xi4_A 1395 ITKVANVELYYRAIQFYL--EFKPLLLNDLLMVLS 1427 (1630)
T ss_pred hcccccHHHHHHHHHHHH--hhChHHHHHHHHHhh
Confidence 4556666655 55555 555556666666663
No 57
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}
Probab=99.83 E-value=2.9e-21 Score=177.43 Aligned_cols=96 Identities=14% Similarity=0.056 Sum_probs=88.1
Q ss_pred CCCCCCEEEEEcCeEEEeehhHHhccCHHHHHHhcCCCCcCCCCeeEecCCCCCHHHHHHHhhhHccCCCCCCChhHHHH
Q 002379 214 LEEDDSVTFCVRDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFCPGIVLE 293 (929)
Q Consensus 214 ~~~~~~v~~~v~~~~~~~hr~iLaa~S~~F~~mf~~~~~e~~~~~i~~~~~~~~~~~~~~~l~~~Yt~~~~~~~~~~~~~ 293 (929)
++...||+|+|+|++|+|||.|||++|+||++||.+++ ...|+| +++++++|+.+|+|+|||+++ ++.+++.+
T Consensus 21 ~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~----~~~i~l--~~~~~~~f~~ll~~iYtg~~~-~~~~~v~~ 93 (119)
T 3b84_A 21 KGQYCDATLDVGGLVFKAHWSVLACCSHFFQSLYGDGS----GGSVVL--PAGFAEIFGLLLDFFYTGHLA-LTSGNRDQ 93 (119)
T ss_dssp HTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTTT----CCCEEE--CGGGHHHHHHHHHHHHHSCCC-CCTTTHHH
T ss_pred cCCCcceEEEECCEEEEeeHHHHhhcCHHHHHHHCCCC----CCeEEe--CCCCHHHHHHHHHHHcCCCCc-cCHHHHHH
Confidence 34444599999999999999999999999999999987 568999 999999999999999999999 99999999
Q ss_pred HHHHhchhChHhHHHHHHHHHHh
Q 002379 294 LLSFANRFCCEEMKSACDAHLAS 316 (929)
Q Consensus 294 ll~~A~~~~~~~l~~~C~~~l~~ 316 (929)
++.+|++|+++.|+..|+++|.+
T Consensus 94 ll~~A~~~~i~~L~~~C~~~l~~ 116 (119)
T 3b84_A 94 VLLAARELRVPEAVELCQSFKPK 116 (119)
T ss_dssp HHHHHHHTTCHHHHHHHHHCC--
T ss_pred HHHHHHHhCcHHHHHHHHHHHHH
Confidence 99999999999999999999875
No 58
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.83 E-value=2.9e-19 Score=190.06 Aligned_cols=219 Identities=14% Similarity=0.052 Sum_probs=136.0
Q ss_pred ChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHHHHH
Q 002379 639 KSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILA 718 (929)
Q Consensus 639 ~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~l~~~l~ 718 (929)
++.+++.+|.++...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..|+++++++|++
T Consensus 42 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~----------- 110 (275)
T 1xnf_A 42 RAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY----------- 110 (275)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----------
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccc-----------
Confidence 345556666666666666666666666666666666666666666666666666666666666665544
Q ss_pred hcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHhCCH
Q 002379 719 DTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNEL 796 (929)
Q Consensus 719 ~~~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~--~~~a~~~la~~~~~~g~~ 796 (929)
..++..+|.++...|++++|+..|+++++.. ++......+ .....|++
T Consensus 111 -----------------------------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~ 160 (275)
T 1xnf_A 111 -----------------------------NYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLY-LAEQKLDE 160 (275)
T ss_dssp -----------------------------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH-HHHHHHCH
T ss_pred -----------------------------cHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHH-HHHHhcCH
Confidence 3345556666666666666666666666552 222222222 23445666
Q ss_pred HHHHHHHHHHHHHccCCHHHHHHHh---hhCCHHHHHHHHHHHHhcCCC----CcHHHHHHHHHHHhcCCHHHHHHHHHH
Q 002379 797 KAAYDEMTKLLEKAQYSASAFEKRS---EYSDREMAKNDLNMATQLDPL----RTYPYRYRAAVLMDDQKEVEAVEELSK 869 (929)
Q Consensus 797 ~~A~~~~~~al~~~p~~~~~~~~lg---~~g~~~~A~~~~~~al~l~p~----~~~~~~~la~~~~~~g~~~eA~~~l~k 869 (929)
++|+..+.+++...|++...+...+ ..++.++|+..+++++...|. ++.++..+|.++...|++++|+..|++
T Consensus 161 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 240 (275)
T 1xnf_A 161 KQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKL 240 (275)
T ss_dssp HHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6666666666666666554443333 335556666666666665553 357788888888888888888888888
Q ss_pred HHhcCCCchHHHHHHHHHHHcCCHHHHHHHH
Q 002379 870 AIAFKPDLQMLHLRAAFYESIGDLTSAIRDS 900 (929)
Q Consensus 870 al~~~p~~~~~~~la~~~~~~g~~~~A~~~~ 900 (929)
+++.+|++...+ +.++..+|++++|++.|
T Consensus 241 al~~~p~~~~~~--~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 241 AVANNVHNFVEH--RYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHTTCCTTCHHH--HHHHHHHHHHHHC----
T ss_pred HHhCCchhHHHH--HHHHHHHHHHHhhHHHH
Confidence 888888664333 66677788888888776
No 59
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A
Probab=99.83 E-value=1.6e-20 Score=173.20 Aligned_cols=98 Identities=17% Similarity=0.153 Sum_probs=90.0
Q ss_pred cCCCCCCEEEEEcCeEEEeehhHHhccCHHHHHHhcCCCCcCCCCeeEecCCCCCHHHHHHHhhhHccCCCCCCChhHHH
Q 002379 213 SLEEDDSVTFCVRDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFCPGIVL 292 (929)
Q Consensus 213 ~~~~~~~v~~~v~~~~~~~hr~iLaa~S~~F~~mf~~~~~e~~~~~i~~~~~~~~~~~~~~~l~~~Yt~~~~~~~~~~~~ 292 (929)
.++...||+|+|+|++|+|||.|||++|+||++||.++ ...|++ +++++++|+.+|+|+|||+++ ++.+++.
T Consensus 24 ~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~-----~~~i~l--~~~~~~~f~~ll~~~Ytg~~~-~~~~~~~ 95 (121)
T 1buo_A 24 LAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILFHRN-----SQHYTL--DFLSPKTFQQILEYAYTATLQ-AKAEDLD 95 (121)
T ss_dssp HHTTTCCEEEEESSCEEEECHHHHHHHCHHHHHHTTSC-----CSEEEE--CSSCHHHHHHHHHHHHHSCCC-CCGGGHH
T ss_pred hcCCCCCEEEEECCEEEehhHHHHhhcCHHHHHHHcCC-----CcEEEe--CCCCHHHHHHHHHhhcCCCcC-CCHHHHH
Confidence 33444459999999999999999999999999999874 467999 999999999999999999999 9999999
Q ss_pred HHHHHhchhChHhHHHHHHHHHHhhc
Q 002379 293 ELLSFANRFCCEEMKSACDAHLASLV 318 (929)
Q Consensus 293 ~ll~~A~~~~~~~l~~~C~~~l~~~~ 318 (929)
+++.+|++|+++.|+..|+++|.+.|
T Consensus 96 ~ll~~A~~~~i~~L~~~c~~~l~~~I 121 (121)
T 1buo_A 96 DLLYAAEILEIEYLEEQCLKMLETIQ 121 (121)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999998754
No 60
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Probab=99.82 E-value=1.5e-20 Score=172.06 Aligned_cols=98 Identities=17% Similarity=0.213 Sum_probs=87.8
Q ss_pred CCCCCCEEEEEcCeEEEeehhHHhccCHHHHHHhcCCCCcCCCCeeEecCCCCCHHHHHHHhhhHccCCCCCCChhHHHH
Q 002379 214 LEEDDSVTFCVRDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFCPGIVLE 293 (929)
Q Consensus 214 ~~~~~~v~~~v~~~~~~~hr~iLaa~S~~F~~mf~~~~~e~~~~~i~~~~~~~~~~~~~~~l~~~Yt~~~~~~~~~~~~~ 293 (929)
++...||+|+|+|++|+|||.|||++|+||++||.++ ..+.|+|..+++++++|+.+|+|+|||+++ ++.+++.+
T Consensus 19 ~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~~f~~~----~~~~i~l~~~~~~~~~f~~ll~~~Yt~~~~-~~~~~v~~ 93 (116)
T 2vpk_A 19 AGFLCDCTIVIGEFQFKAHRNVLASFSEYFGAIYRST----SENNVFLDQSQVKADGFQKLLEFIYTGTLN-LDSWNVKE 93 (116)
T ss_dssp HTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTC----CCSCEECCTTTCCHHHHHHHHHHHHHSCCC-CCTTTHHH
T ss_pred cCCCCcEEEEECCEEEeccHHHHhhcCHHHHHHHcCC----CCCeEEeecCCCCHHHHHHHHHHHcCCCcc-cCHHHHHH
Confidence 3444459999999999999999999999999999987 356788822399999999999999999999 99999999
Q ss_pred HHHHhchhChHhHHHHHHHHHHh
Q 002379 294 LLSFANRFCCEEMKSACDAHLAS 316 (929)
Q Consensus 294 ll~~A~~~~~~~l~~~C~~~l~~ 316 (929)
++.+|++|+++.|+..|+++|.+
T Consensus 94 ll~~A~~~~i~~L~~~C~~~l~~ 116 (116)
T 2vpk_A 94 IHQAADYLKVEEVVTKCKIKMED 116 (116)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHC-
T ss_pred HHHHHHHhCCHHHHHHHHHHHhC
Confidence 99999999999999999999853
No 61
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus}
Probab=99.82 E-value=6.4e-21 Score=179.25 Aligned_cols=105 Identities=12% Similarity=0.031 Sum_probs=88.5
Q ss_pred hhhhccCCCCC-CEEEEEcCeEEEeehhHHhccCHHHHHHhcCCCCcCCCCeeEecCCCCCHHHHHHHhhhHccCCCCCC
Q 002379 208 KFVCLSLEEDD-SVTFCVRDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLF 286 (929)
Q Consensus 208 ~~~~~~~~~~~-~v~~~v~~~~~~~hr~iLaa~S~~F~~mf~~~~~e~~~~~i~~~~~~~~~~~~~~~l~~~Yt~~~~~~ 286 (929)
....+..++.. ||+|+|+|++|+|||.|||++|+||++||.++| ...|+| +++++++|+.+|+|||||++. +
T Consensus 15 ~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~mf~~~~----~~~i~l--~~~~~~~f~~lL~fiYtg~~~-i 87 (135)
T 2yy9_A 15 ELNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQRIYGDGT----GGSVVL--PAGFAEIFGLLLDFFYTGHLA-L 87 (135)
T ss_dssp HHHHHHHTTTTCCEEEEETTEEEEECHHHHHHHCHHHHHTCC--------CCEEE--CGGGHHHHHHHHHHHHHSCCC-C
T ss_pred HHHHHHhcCCCcceEEEECCEEEehHHHHHHHhCHHHHHHHcCCC----CCeEEe--CCCCHHHHHHHHHHHhCCCCC-C
Confidence 33344444444 499999999999999999999999999999987 567999 999999999999999999999 9
Q ss_pred ChhHHHHHHHHhchhChHhHHHHHHHHHHhhcC
Q 002379 287 CPGIVLELLSFANRFCCEEMKSACDAHLASLVG 319 (929)
Q Consensus 287 ~~~~~~~ll~~A~~~~~~~l~~~C~~~l~~~~~ 319 (929)
+.+++.+|+.+|++|+++.|+..|+++|.+.+.
T Consensus 88 ~~~~v~~ll~~A~~l~i~~L~~~C~~~l~~~l~ 120 (135)
T 2yy9_A 88 TSGNRDQVLLAAKELRVPEAVELCQSFQPQTSV 120 (135)
T ss_dssp CTTTHHHHHHHHHHTTCHHHHHHHHHCCC----
T ss_pred CHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999988776
No 62
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.82 E-value=5.1e-18 Score=180.95 Aligned_cols=235 Identities=13% Similarity=0.031 Sum_probs=200.0
Q ss_pred CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccCCHhHHHHHHHHHHH----hccHHHHHHHHHHHHhhcCCchhhhc
Q 002379 511 DPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIA----ADDYESALRDTLALLALESNYMMFHG 586 (929)
Q Consensus 511 ~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~ 586 (929)
+|+++.+++.+|.++...|++++|+..|+++++ ..++..+..+|.++.. .+++++|+..|+++++.. ++
T Consensus 2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~-~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~---- 74 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD-LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YS---- 74 (273)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CH----
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CH----
Confidence 578899999999999999999999999999996 2367889999999999 999999999999999874 44
Q ss_pred cccHHHHHHHHHHh----hcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHHHH----hcCHHH
Q 002379 587 RVSGDHLVKLLNHH----VRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLR----LNCQKA 658 (929)
Q Consensus 587 ~~~a~~ll~~~~~~----~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~ 658 (929)
.++..+|.++.. .+++++|..++ +++++. +++.+++.+|.+|.. .+++++
T Consensus 75 --~a~~~lg~~~~~g~~~~~~~~~A~~~~------------------~~a~~~--~~~~a~~~lg~~~~~~~~~~~~~~~ 132 (273)
T 1ouv_A 75 --NGCHLLGNLYYSGQGVSQNTNKALQYY------------------SKACDL--KYAEGCASLGGIYHDGKVVTRDFKK 132 (273)
T ss_dssp --HHHHHHHHHHHHTSSSCCCHHHHHHHH------------------HHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred --HHHHHHHHHHhCCCCcccCHHHHHHHH------------------HHHHHc--CCccHHHHHHHHHHcCCCcccCHHH
Confidence 677778888888 88888886666 777776 378889999999998 899999
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhccchHHHHHHHHHHHhcCCCCCChHHHHHHH
Q 002379 659 AMRCLRLARNHSSSEHERLVYEGWILYD----TGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLL 734 (929)
Q Consensus 659 A~~~l~~al~~~p~~~~~~~~lg~~~~~----~g~~~eA~~~~~~al~~~p~~~~~~~l~~~l~~~~~~~~~~~~a~~~~ 734 (929)
|+..|+++++.+ ++.++..+|.++.. .+++++|+..|+++++..+
T Consensus 133 A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~----------------------------- 181 (273)
T 1ouv_A 133 AVEYFTKACDLN--DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKD----------------------------- 181 (273)
T ss_dssp HHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC-----------------------------
T ss_pred HHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC-----------------------------
Confidence 999999998876 56788889999988 8899999999998886532
Q ss_pred HHHhhchhccCchhHHHHHHHHHHHH----cCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHH
Q 002379 735 EEALRCPSDGLRKGQALNNLGSIYVE----CGKLDQAENCYINALDIKHTRAHQGLARVYYL----KNELKAAYDEMTKL 806 (929)
Q Consensus 735 e~Al~~~~~al~~~~a~~~lg~~~~~----~g~~~eA~~~~~~al~~~~~~a~~~la~~~~~----~g~~~~A~~~~~~a 806 (929)
..++.++|.+|.. .+++++|+.+|+++++.+++.++..+|.+|.. .+++++|+..|+++
T Consensus 182 -------------~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a 248 (273)
T 1ouv_A 182 -------------SPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKG 248 (273)
T ss_dssp -------------HHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHH
T ss_pred -------------HHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHH
Confidence 3457888999999 99999999999999999889999999999999 99999999999999
Q ss_pred HHHccCCHHHHH
Q 002379 807 LEKAQYSASAFE 818 (929)
Q Consensus 807 l~~~p~~~~~~~ 818 (929)
++..|+++..+.
T Consensus 249 ~~~~~~~a~~~l 260 (273)
T 1ouv_A 249 CKLGAKGACDIL 260 (273)
T ss_dssp HHHTCHHHHHHH
T ss_pred HHcCCHHHHHHH
Confidence 999886655443
No 63
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.82 E-value=1.2e-18 Score=190.19 Aligned_cols=275 Identities=13% Similarity=0.014 Sum_probs=222.5
Q ss_pred hhhHHHHHHhhhh--HHHHHHHHHHhcCCCC----hHHHHHHHHHHHHhCCHHHHHHHHHHHhcccC-------CHhHHH
Q 002379 486 WMYQERSLYNLGR--EKIVDLNYASELDPTL----SFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-------SVDCLE 552 (929)
Q Consensus 486 ~~~~~~~l~~~~~--~Ai~~~~kal~l~P~~----~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~-------~~~~~~ 552 (929)
++..|..++..++ +|+..|+++++.+|++ ..++..+|.++...|++++|+..+++++.... .+..+.
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 87 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASG 87 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHH
Confidence 4555666666666 9999999999999998 46888999999999999999999999987632 345688
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHhhcCCchhhhccccHHHHHHHHHHhhcc--------------------cchHHHHHH
Q 002379 553 LRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRS--------------------WSPADCWIK 612 (929)
Q Consensus 553 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~ll~~~~~~~~~--------------------~~~A~~~l~ 612 (929)
.+|.++...|++++|+..++++++..|..........++..++.++...|+ +++|...+
T Consensus 88 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~- 166 (338)
T 3ro2_A 88 NLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLY- 166 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHH-
Confidence 899999999999999999999999877654222223578889999999999 77775555
Q ss_pred hhhccccccccccHHHHHHHHhc------CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCch------HHHHHHH
Q 002379 613 LYDRWSSVDDIGSLAVINQMLIN------DPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE------HERLVYE 680 (929)
Q Consensus 613 l~~~~~~~~~~~~l~~~~~al~~------~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~------~~~~~~l 680 (929)
.+++.. .+....++..+|.++...|++++|+..++++++..+.. ..++..+
T Consensus 167 -----------------~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 229 (338)
T 3ro2_A 167 -----------------EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNL 229 (338)
T ss_dssp -----------------HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred -----------------HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 454443 33446688999999999999999999999999876543 3388999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHH
Q 002379 681 GWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVE 760 (929)
Q Consensus 681 g~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~l~~~l~~~~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~ 760 (929)
|.++...|++++|+..+++++.+.+..... . ....++..+|.++..
T Consensus 230 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-----------------------~-----------~~~~~~~~la~~~~~ 275 (338)
T 3ro2_A 230 GNAYIFLGEFETASEYYKKTLLLARQLKDR-----------------------A-----------VEAQSCYSLGNTYTL 275 (338)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHTTCH-----------------------H-----------HHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhhcch-----------------------h-----------HHHHHHHHHHHHHHH
Confidence 999999999999999999999876654000 0 013458899999999
Q ss_pred cCCHHHHHHHHHHHHcC----CC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccC
Q 002379 761 CGKLDQAENCYINALDI----KH----TRAHQGLARVYYLKNELKAAYDEMTKLLEKAQY 812 (929)
Q Consensus 761 ~g~~~eA~~~~~~al~~----~~----~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 812 (929)
.|++++|+.+++++++. .. ..++..+|.++...|++++|...++++++..+.
T Consensus 276 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 276 LQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred hcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 99999999999999987 22 348889999999999999999999999987664
No 64
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.81 E-value=2.6e-18 Score=180.36 Aligned_cols=214 Identities=15% Similarity=0.055 Sum_probs=185.3
Q ss_pred hcCCCC-hHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHH
Q 002379 634 INDPGK-SFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFL 712 (929)
Q Consensus 634 ~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~ 712 (929)
..+|.+ +.+++.+|.++...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..++++++.+|+.
T Consensus 30 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~----- 104 (252)
T 2ho1_A 30 DKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRN----- 104 (252)
T ss_dssp -CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----
T ss_pred ccchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCc-----
Confidence 345655 78899999999999999999999999999999999999999999999999999999999999988866
Q ss_pred HHHHHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHc--C--CCHHHHHHHHH
Q 002379 713 KAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALD--I--KHTRAHQGLAR 788 (929)
Q Consensus 713 l~~~l~~~~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~--~--~~~~a~~~la~ 788 (929)
..++..+|.++...|++++|+.+|+++++ . ....++..+|.
T Consensus 105 -----------------------------------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~ 149 (252)
T 2ho1_A 105 -----------------------------------ARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGL 149 (252)
T ss_dssp -----------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHH
T ss_pred -----------------------------------HHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHH
Confidence 44578889999999999999999999998 4 34568889999
Q ss_pred HHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHhhhCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHH
Q 002379 789 VYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELS 868 (929)
Q Consensus 789 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~ 868 (929)
++...|++++|+..++++++..|+ +..++..+|.++...|++++|+..++
T Consensus 150 ~~~~~g~~~~A~~~~~~~~~~~~~------------------------------~~~~~~~la~~~~~~g~~~~A~~~~~ 199 (252)
T 2ho1_A 150 VSLQMKKPAQAKEYFEKSLRLNRN------------------------------QPSVALEMADLLYKEREYVPARQYYD 199 (252)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCSC------------------------------CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCcc------------------------------cHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999888888888777766554 45567778889999999999999999
Q ss_pred HHHhcCCCchHHH-HHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHH
Q 002379 869 KAIAFKPDLQMLH-LRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLY 917 (929)
Q Consensus 869 kal~~~p~~~~~~-~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~ 917 (929)
++++..|++...+ .++.++...|++++|...++++++++|+++.+...+
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 249 (252)
T 2ho1_A 200 LFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEFQ 249 (252)
T ss_dssp HHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHHHH
T ss_pred HHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 9999998887555 669999999999999999999999999998876654
No 65
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.81 E-value=4.7e-19 Score=184.66 Aligned_cols=215 Identities=15% Similarity=0.102 Sum_probs=163.1
Q ss_pred ChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHHHHH
Q 002379 639 KSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILA 718 (929)
Q Consensus 639 ~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~l~~~l~ 718 (929)
.+..++.+|..+...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..++++++..|+.
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~----------- 90 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSA----------- 90 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----------
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc-----------
Confidence 467788899999999999999999999999999999999999999999999999999999999888765
Q ss_pred hcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHhCCH
Q 002379 719 DTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI--KHTRAHQGLARVYYLKNEL 796 (929)
Q Consensus 719 ~~~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~--~~~~a~~~la~~~~~~g~~ 796 (929)
..++..+|.++...|++++|+..|+++++. .++.++..+|.++...|++
T Consensus 91 -----------------------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 141 (243)
T 2q7f_A 91 -----------------------------ATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQP 141 (243)
T ss_dssp -----------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCH
T ss_pred -----------------------------hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccH
Confidence 455778888888888888888888888877 4567788888888888888
Q ss_pred HHHHHHHHHHHHHccCCHHHHHHHhhhCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 002379 797 KAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPD 876 (929)
Q Consensus 797 ~~A~~~~~~al~~~p~~~~~~~~lg~~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~ 876 (929)
++|+..++++++..| .++.++..+|.++...|++++|+..++++++..|+
T Consensus 142 ~~A~~~~~~~~~~~~------------------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 191 (243)
T 2q7f_A 142 KLALPYLQRAVELNE------------------------------NDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPG 191 (243)
T ss_dssp HHHHHHHHHHHHHCT------------------------------TCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHhCC------------------------------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 777777777766654 44556778888999999999999999999999998
Q ss_pred chHHH-HHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHhh
Q 002379 877 LQMLH-LRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNRARDQ 923 (929)
Q Consensus 877 ~~~~~-~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~l~~~ 923 (929)
+...+ .+|.+|...|++++|+..|+++++++|+++.++..+..+...
T Consensus 192 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~ 239 (243)
T 2q7f_A 192 HADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHH 239 (243)
T ss_dssp CHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC----
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHhh
Confidence 76554 779999999999999999999999999999999888877654
No 66
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.81 E-value=5.6e-18 Score=173.85 Aligned_cols=213 Identities=12% Similarity=-0.016 Sum_probs=184.4
Q ss_pred cCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHH
Q 002379 635 NDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKA 714 (929)
Q Consensus 635 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~l~ 714 (929)
.+|.++.++..+|.++...|++++|+..++++++.+|+++.++..+|.++...|++++|+..+++++...|++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~------- 75 (225)
T 2vq2_A 3 KANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDS------- 75 (225)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------
T ss_pred CCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-------
Confidence 3577888999999999999999999999999999999999999999999999999999999999999988876
Q ss_pred HHHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHc-CCHHHHHHHHHHHHc--CC--CHHHHHHHHHH
Q 002379 715 YILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVEC-GKLDQAENCYINALD--IK--HTRAHQGLARV 789 (929)
Q Consensus 715 ~~l~~~~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~-g~~~eA~~~~~~al~--~~--~~~a~~~la~~ 789 (929)
..++..+|.++... |++++|+..|+++++ .. ...++..+|.+
T Consensus 76 ---------------------------------~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 122 (225)
T 2vq2_A 76 ---------------------------------AEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGIC 122 (225)
T ss_dssp ---------------------------------HHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHH
T ss_pred ---------------------------------hHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHH
Confidence 44577889999999 999999999999998 32 35788899999
Q ss_pred HHHhCCHHHHHHHHHHHHHHccCCHHHHHHHhhhCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHH
Q 002379 790 YYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSK 869 (929)
Q Consensus 790 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~k 869 (929)
+...|++++|+..++++++..|+ ++.++..+|.++...|++++|+..+++
T Consensus 123 ~~~~~~~~~A~~~~~~~~~~~~~------------------------------~~~~~~~la~~~~~~~~~~~A~~~~~~ 172 (225)
T 2vq2_A 123 SAKQGQFGLAEAYLKRSLAAQPQ------------------------------FPPAFKELARTKMLAGQLGDADYYFKK 172 (225)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTT------------------------------CHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC------------------------------CchHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999888888888777766554 455677788899999999999999999
Q ss_pred HHhcCC-CchHHH-HHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHH
Q 002379 870 AIAFKP-DLQMLH-LRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLY 917 (929)
Q Consensus 870 al~~~p-~~~~~~-~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~ 917 (929)
+++..| ++...+ .++.++...|+.++|..+++.+++.+|+++.+...+
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 173 YQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence 999999 776655 558888889999999999999999999999887654
No 67
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.81 E-value=2.2e-18 Score=183.13 Aligned_cols=223 Identities=16% Similarity=0.158 Sum_probs=197.3
Q ss_pred HHhcCHHHHHHHHHHHHhc----CCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHHHHHhcCCCCCC
Q 002379 651 LRLNCQKAAMRCLRLARNH----SSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPES 726 (929)
Q Consensus 651 ~~~g~~~~A~~~l~~al~~----~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~l~~~l~~~~~~~~~ 726 (929)
...|++++|+..|+++++. .|.++.++..+|.++...|++++|+..|+++++.+|++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~------------------- 76 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDM------------------- 76 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC-------------------
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCc-------------------
Confidence 3458899999999999997 35678899999999999999999999999999999977
Q ss_pred hHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHhCCHHHHHHHHH
Q 002379 727 STYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI--KHTRAHQGLARVYYLKNELKAAYDEMT 804 (929)
Q Consensus 727 ~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~--~~~~a~~~la~~~~~~g~~~~A~~~~~ 804 (929)
..++..+|.++...|++++|+.+|+++++. .++.++..+|.++...|++++|+..++
T Consensus 77 ---------------------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 135 (275)
T 1xnf_A 77 ---------------------PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLL 135 (275)
T ss_dssp ---------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ---------------------HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHH
Confidence 456888999999999999999999999998 457899999999999999999999999
Q ss_pred HHHHHccCCHHHHHHHh---hhCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc----
Q 002379 805 KLLEKAQYSASAFEKRS---EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDL---- 877 (929)
Q Consensus 805 ~al~~~p~~~~~~~~lg---~~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~---- 877 (929)
++++..|++.......+ ..|++++|+..+++++...|.+...+. ++.++...++.++|+..+++++...|..
T Consensus 136 ~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 214 (275)
T 1xnf_A 136 AFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHL 214 (275)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHH
T ss_pred HHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccc
Confidence 99999999986554444 569999999999999999998877665 7778889999999999999999887753
Q ss_pred -hHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHH
Q 002379 878 -QMLHLRAAFYESIGDLTSAIRDSQAALCLDPNHMETL 914 (929)
Q Consensus 878 -~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~ 914 (929)
..++.+|.+|...|++++|+..|+++++++|++...+
T Consensus 215 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 252 (275)
T 1xnf_A 215 SETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEH 252 (275)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHH
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHHH
Confidence 3444789999999999999999999999999776533
No 68
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.81 E-value=8.3e-19 Score=182.76 Aligned_cols=191 Identities=17% Similarity=0.133 Sum_probs=164.9
Q ss_pred cccccHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002379 621 DDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKS 700 (929)
Q Consensus 621 ~~~~~l~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~a 700 (929)
+...++..++++++.+|.++.++..+|.++...|++++|+..++++++.+|.+..++..+|.++...|++++|+..++++
T Consensus 38 ~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 117 (243)
T 2q7f_A 38 DYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKA 117 (243)
T ss_dssp ----CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 33445777899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccchHHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC--C
Q 002379 701 ISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI--K 778 (929)
Q Consensus 701 l~~~p~~~~~~~l~~~l~~~~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~--~ 778 (929)
++..|++ ..++..+|.++...|++++|+..++++++. +
T Consensus 118 ~~~~~~~----------------------------------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 157 (243)
T 2q7f_A 118 LRAGMEN----------------------------------------GDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN 157 (243)
T ss_dssp HHHTCCS----------------------------------------HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT
T ss_pred HHhCCCC----------------------------------------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Confidence 9998876 455889999999999999999999999988 5
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHhhhCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcC
Q 002379 779 HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQ 858 (929)
Q Consensus 779 ~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g 858 (929)
.+.++..+|.++...|++++|+..++++++..|++ +.++..+|.++...|
T Consensus 158 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------------------------------~~~~~~la~~~~~~~ 207 (243)
T 2q7f_A 158 DTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGH------------------------------ADAFYNAGVTYAYKE 207 (243)
T ss_dssp CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTC------------------------------HHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc------------------------------HHHHHHHHHHHHHcc
Confidence 67899999999999999999998888887776554 445666777777777
Q ss_pred CHHHHHHHHHHHHhcCCCchHHH
Q 002379 859 KEVEAVEELSKAIAFKPDLQMLH 881 (929)
Q Consensus 859 ~~~eA~~~l~kal~~~p~~~~~~ 881 (929)
++++|+..|+++++.+|+++..+
T Consensus 208 ~~~~A~~~~~~~~~~~p~~~~~~ 230 (243)
T 2q7f_A 208 NREKALEMLDKAIDIQPDHMLAL 230 (243)
T ss_dssp CTTHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHccCcchHHHH
Confidence 77777777777777777776544
No 69
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.81 E-value=1.9e-18 Score=172.26 Aligned_cols=171 Identities=12% Similarity=0.070 Sum_probs=162.3
Q ss_pred CChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccC-CHhHHHHHHHHHHHhccHHHHHHHHHHHHhhcCCchhhhccccHH
Q 002379 513 TLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGD 591 (929)
Q Consensus 513 ~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~ 591 (929)
+++..|+.+|.++..+|++++|+..|+++++.+| ++..+..+|.++...|++++|+..+++++...|++. .+.
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~ 76 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSA------EAY 76 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCH------HHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhH------HHH
Confidence 4678899999999999999999999999999999 888999999999999999999999999999999998 778
Q ss_pred HHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Q 002379 592 HLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSS 671 (929)
Q Consensus 592 ~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p 671 (929)
..++.++...++++.|...+ .+++..+|.++.++..+|.++..+|++++|+..|+++++.+|
T Consensus 77 ~~~~~~~~~~~~~~~a~~~~------------------~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p 138 (184)
T 3vtx_A 77 YILGSANFMIDEKQAAIDAL------------------QRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKP 138 (184)
T ss_dssp HHHHHHHHHTTCHHHHHHHH------------------HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHcCCHHHHHHHH------------------HHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcc
Confidence 88999999999999996665 999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch
Q 002379 672 SEHERLVYEGWILYDTGHREEALSRAEKSISIERTF 707 (929)
Q Consensus 672 ~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~ 707 (929)
.++.++..+|.+|...|++++|+..|+++++++|++
T Consensus 139 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 174 (184)
T 3vtx_A 139 GFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKK 174 (184)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHH
T ss_pred hhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccC
Confidence 999999999999999999999999999999999976
No 70
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.80 E-value=1.6e-18 Score=172.78 Aligned_cols=165 Identities=19% Similarity=0.183 Sum_probs=156.6
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHh----
Q 002379 748 GQALNNLGSIYVECGKLDQAENCYINALDI--KHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS---- 821 (929)
Q Consensus 748 ~~a~~~lg~~~~~~g~~~eA~~~~~~al~~--~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg---- 821 (929)
..+|+++|.++...|++++|+..|++++++ +++.++..+|.+|...|++++|+..+.+++...|++..++...|
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANF 84 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence 467999999999999999999999999999 56789999999999999999999999999999999999999888
Q ss_pred hhCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHH-HHHHHHHHcCCHHHHHHHH
Q 002379 822 EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLH-LRAAFYESIGDLTSAIRDS 900 (929)
Q Consensus 822 ~~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~-~la~~~~~~g~~~~A~~~~ 900 (929)
..++++.|...+.+++.++|.+..++..+|.++...|++++|++.|+++++++|+++..+ .+|.+|..+|++++|+..|
T Consensus 85 ~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 164 (184)
T 3vtx_A 85 MIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYF 164 (184)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHH
Confidence 679999999999999999999999999999999999999999999999999999997655 7899999999999999999
Q ss_pred HHHhccCCCCHH
Q 002379 901 QAALCLDPNHME 912 (929)
Q Consensus 901 ~~al~l~P~~~~ 912 (929)
+++++++|+++.
T Consensus 165 ~~al~~~p~~a~ 176 (184)
T 3vtx_A 165 KKALEKEEKKAK 176 (184)
T ss_dssp HHHHHTTHHHHH
T ss_pred HHHHhCCccCHH
Confidence 999999998754
No 71
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.80 E-value=2.2e-18 Score=187.59 Aligned_cols=242 Identities=9% Similarity=-0.067 Sum_probs=202.6
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHH-------hcCH-------HHHHHHHHHHHh-cCCchHHHHHHHHHHHHHcCCH
Q 002379 626 LAVINQMLINDPGKSFLRFRQSLLLLR-------LNCQ-------KAAMRCLRLARN-HSSSEHERLVYEGWILYDTGHR 690 (929)
Q Consensus 626 l~~~~~al~~~p~~~~~~~~lg~~~~~-------~g~~-------~~A~~~l~~al~-~~p~~~~~~~~lg~~~~~~g~~ 690 (929)
+..|++++..+|.++.+|+.+|..+.. .|++ ++|+..|+++++ ++|++..+|..+|.++...|++
T Consensus 36 ~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~ 115 (308)
T 2ond_A 36 MFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKY 115 (308)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCH
Confidence 567799999999999999999999874 5885 999999999999 7999999999999999999999
Q ss_pred HHHHHHHHHHHhhccchHHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCchhH-HHHHHHHHHHHcCCHHHHHH
Q 002379 691 EEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQ-ALNNLGSIYVECGKLDQAEN 769 (929)
Q Consensus 691 ~eA~~~~~~al~~~p~~~~~~~l~~~l~~~~~~~~~~~~a~~~~e~Al~~~~~al~~~~-a~~~lg~~~~~~g~~~eA~~ 769 (929)
++|...|++++++.|++ .. +|.++|.++...|++++|+.
T Consensus 116 ~~A~~~~~~al~~~p~~----------------------------------------~~~~~~~~~~~~~~~~~~~~A~~ 155 (308)
T 2ond_A 116 EKVHSIYNRLLAIEDID----------------------------------------PTLVYIQYMKFARRAEGIKSGRM 155 (308)
T ss_dssp HHHHHHHHHHHTSSSSC----------------------------------------THHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHHHhccccC----------------------------------------ccHHHHHHHHHHHHhcCHHHHHH
Confidence 99999999999998866 22 58888889999999999999
Q ss_pred HHHHHHcCC--CHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHccCCHHHHHHHh----hhCCHHHHHHHHHHHHhc---
Q 002379 770 CYINALDIK--HTRAHQGLARVYYL-KNELKAAYDEMTKLLEKAQYSASAFEKRS----EYSDREMAKNDLNMATQL--- 839 (929)
Q Consensus 770 ~~~~al~~~--~~~a~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~lg----~~g~~~~A~~~~~~al~l--- 839 (929)
.|+++++.. ...++...+..... .|++++|...|+++++..|+++.+|..++ ..|++++|+..|++++..
T Consensus 156 ~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l 235 (308)
T 2ond_A 156 IFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 235 (308)
T ss_dssp HHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCC
Confidence 999999984 34566655555433 69999999999999999999999998888 568999999999999985
Q ss_pred CC-CCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHH
Q 002379 840 DP-LRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLHLRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYN 918 (929)
Q Consensus 840 ~p-~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~ 918 (929)
+| .....|..++..+...|++++|...++++++..|++......+.+ ..-.+.+.++|++++++..++
T Consensus 236 ~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~~~~~~~~~-----------~~r~~~l~~~P~~~~~ln~lg 304 (308)
T 2ond_A 236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYEGKETALL-----------VDRYKFMDLYPCSASELKALG 304 (308)
T ss_dssp CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTSSCHHHHH-----------HTTTCBTTBCSSCHHHHHTTT
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccccccchHHHH-----------HHHHHhcccCCCCHHHHHhcC
Confidence 55 367788899999999999999999999999999986533222222 222377889999998877553
No 72
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A
Probab=99.80 E-value=3.8e-20 Score=169.96 Aligned_cols=94 Identities=21% Similarity=0.289 Sum_probs=86.5
Q ss_pred CCCCCCEEEEEcCeEEEeehhHHhccCHHHHHHhcCCCCcCCCCeeEecCCCCCHHHHHHHhhhHccCCCCCCChhHHHH
Q 002379 214 LEEDDSVTFCVRDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFCPGIVLE 293 (929)
Q Consensus 214 ~~~~~~v~~~v~~~~~~~hr~iLaa~S~~F~~mf~~~~~e~~~~~i~~~~~~~~~~~~~~~l~~~Yt~~~~~~~~~~~~~ 293 (929)
++...||+|+|+|++|+|||.|||++|+||++||+++ ...|++ +++++++|+.+|+|+|||++. ++.+++.+
T Consensus 24 ~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~~f~~~-----~~~i~l--~~~~~~~f~~ll~~~Ytg~~~-i~~~~~~~ 95 (119)
T 2q81_A 24 LGLLCDCTFVVDGVHFKAHKAVLAACSEYFKMLFVDQ-----KDVVHL--DISNAAGLGQVLEFMYTAKLS-LSPENVDD 95 (119)
T ss_dssp HTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHHC-----CSGGGG--GGCCHHHHHHHHHHHHHSCCC-CCTTTHHH
T ss_pred cCCCcceEEEECCEEEehhHHHHHHcCHHHHHHHcCC-----CCEEEe--CCCCHHHHHHHHHHHcCCCCc-cCHHHHHH
Confidence 3444459999999999999999999999999999863 457888 899999999999999999999 99999999
Q ss_pred HHHHhchhChHhHHHHHHHHHH
Q 002379 294 LLSFANRFCCEEMKSACDAHLA 315 (929)
Q Consensus 294 ll~~A~~~~~~~l~~~C~~~l~ 315 (929)
|+.+|++|+++.|+..|+++|.
T Consensus 96 ll~~A~~l~i~~L~~~C~~~l~ 117 (119)
T 2q81_A 96 VLAVATFLQMQDIITACHALKS 117 (119)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHhCCHHHHHHHHHHHh
Confidence 9999999999999999999985
No 73
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens}
Probab=99.80 E-value=6.8e-21 Score=176.41 Aligned_cols=98 Identities=18% Similarity=0.230 Sum_probs=86.0
Q ss_pred CCCCCCEEEEEcCeEEEeehhHHhccCHHHHHHhcCCCCcCCCCeeEecCCCCCHHHHHHHhhhHccCCCCCCChhHHHH
Q 002379 214 LEEDDSVTFCVRDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFCPGIVLE 293 (929)
Q Consensus 214 ~~~~~~v~~~v~~~~~~~hr~iLaa~S~~F~~mf~~~~~e~~~~~i~~~~~~~~~~~~~~~l~~~Yt~~~~~~~~~~~~~ 293 (929)
++...||+|+|+|++|+|||.|||++|+||++||+++|.|+ ..|++. +++++++|+.+|+|+|||+++ ++.+++.+
T Consensus 26 ~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~mf~~~~~e~--~~i~l~-~~v~~~~f~~lL~~iYtg~~~-i~~~~v~~ 101 (124)
T 2ihc_A 26 KDVLCDVTIFVEGQRFRAHRSVLAACSSYFHSRIVGQADGE--LNITLP-EEVTVKGFEPLIQFAYTAKLI-LSKENVDE 101 (124)
T ss_dssp HTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHTTC---C--EEEECC-TTSCHHHHHHHHHHHHHSEEE-EETTTHHH
T ss_pred cCCCcCEEEEECCEEEecHHHHHHHcCHHHHHHHcCCCCCC--ceEeec-CCcCHHHHHHHHHHhcCCCcc-cCHHHHHH
Confidence 34444599999999999999999999999999999999875 478882 389999999999999999999 99999999
Q ss_pred HHHHhchhChHhHHHHHHHHHH
Q 002379 294 LLSFANRFCCEEMKSACDAHLA 315 (929)
Q Consensus 294 ll~~A~~~~~~~l~~~C~~~l~ 315 (929)
|+.+|++|+++.|+..|+++|.
T Consensus 102 ll~~A~~~~~~~L~~~C~~~l~ 123 (124)
T 2ihc_A 102 VCKCVEFLSVHNIEESCFQFLK 123 (124)
T ss_dssp HHHHHHHHTBSSCCGGGGGTC-
T ss_pred HHHHHHHHCCHHHHHHHHHHHh
Confidence 9999999999999999998874
No 74
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A
Probab=99.79 E-value=8.1e-21 Score=176.44 Aligned_cols=97 Identities=19% Similarity=0.221 Sum_probs=89.0
Q ss_pred cCCCCCCEEEEEcCeEEEeehhHHhccCHHHHHHhcCCCCcCCCCeeEecCCC-CCHHHHHHHhhhHccCCCCCCChhHH
Q 002379 213 SLEEDDSVTFCVRDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDG-VSVEGLRAVEVYTRTSRVDLFCPGIV 291 (929)
Q Consensus 213 ~~~~~~~v~~~v~~~~~~~hr~iLaa~S~~F~~mf~~~~~e~~~~~i~~~~~~-~~~~~~~~~l~~~Yt~~~~~~~~~~~ 291 (929)
.+....||+|+|+|++|+|||.|||++|+||++||.+++.| ...|.+ ++ +++.+|+.+|+|+|||+++ ++.+++
T Consensus 28 ~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~~e--~~~i~l--~~~~~~~~f~~~l~~iYtg~~~-~~~~~v 102 (125)
T 3ohu_A 28 KKDILCDVTLIVERKEFRAHRAVLAACSEYFWQALVGQTKN--DLVVSL--PEEVTARGFGPLLQFAYTAKLL-LSRENI 102 (125)
T ss_dssp HHTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHTTCCCS--SCEEEC--CTTCCHHHHHHHHHHHTTSEEE-ECTTTH
T ss_pred hcCCccceEEEECCEEEechHHHHHHcCHHHHHHhcCCCCC--CcEEEe--CCCCCHHHHHHHHHhHcCCceE-ECHHHH
Confidence 33444459999999999999999999999999999999988 578999 87 9999999999999999999 999999
Q ss_pred HHHHHHhchhChHhHHHHHHHHH
Q 002379 292 LELLSFANRFCCEEMKSACDAHL 314 (929)
Q Consensus 292 ~~ll~~A~~~~~~~l~~~C~~~l 314 (929)
.+|+.+|++|+++.|++.|+++|
T Consensus 103 ~~ll~~A~~l~i~~L~~~C~~~L 125 (125)
T 3ohu_A 103 REVIRCAEFLRMHNLEDSCFSFL 125 (125)
T ss_dssp HHHHHHHHHHTBSSCTTSSCCCC
T ss_pred HHHHHHHHHhCCHHHHHHHHHhC
Confidence 99999999999999999998764
No 75
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.79 E-value=1.8e-18 Score=200.07 Aligned_cols=209 Identities=18% Similarity=0.178 Sum_probs=164.7
Q ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhhccchHHHHHHHHHHHhcCCCCCChHHHHHH
Q 002379 655 CQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHR-EEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQL 733 (929)
Q Consensus 655 ~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~-~eA~~~~~~al~~~p~~~~~~~l~~~l~~~~~~~~~~~~a~~~ 733 (929)
.+++++..++++....|.++.+++.+|.++...|++ ++|+..|+++++++|++
T Consensus 83 ~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~-------------------------- 136 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPEL-------------------------- 136 (474)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTC--------------------------
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCC--------------------------
Confidence 356666777777777777777777777777777777 77777777777777765
Q ss_pred HHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHh---------CCHHHHHHHH
Q 002379 734 LEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIK-HTRAHQGLARVYYLK---------NELKAAYDEM 803 (929)
Q Consensus 734 ~e~Al~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~-~~~a~~~la~~~~~~---------g~~~~A~~~~ 803 (929)
..+++.+|.+|...|++++|+.+|+++++++ ...++.++|.++... |++++|+..|
T Consensus 137 --------------~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~ 202 (474)
T 4abn_A 137 --------------VEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQA 202 (474)
T ss_dssp --------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHH
T ss_pred --------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHH
Confidence 4456677777777777777777777777772 246777777777777 7777788888
Q ss_pred HHHHHHccCCHHHHHHHh----hh--------CCHHHHHHHHHHHHhcCC---CCcHHHHHHHHHHHhcCCHHHHHHHHH
Q 002379 804 TKLLEKAQYSASAFEKRS----EY--------SDREMAKNDLNMATQLDP---LRTYPYRYRAAVLMDDQKEVEAVEELS 868 (929)
Q Consensus 804 ~~al~~~p~~~~~~~~lg----~~--------g~~~~A~~~~~~al~l~p---~~~~~~~~la~~~~~~g~~~eA~~~l~ 868 (929)
+++++.+|++..+|..+| .. |++++|+..|+++++++| .++.+|.++|.+|...|++++|++.|+
T Consensus 203 ~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 282 (474)
T 4abn_A 203 KLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFS 282 (474)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 888877777777777777 34 778888888888888888 899999999999999999999999999
Q ss_pred HHHhcCCCchHHH-HHHHHHHHcCCHHHHHHHHHHH
Q 002379 869 KAIAFKPDLQMLH-LRAAFYESIGDLTSAIRDSQAA 903 (929)
Q Consensus 869 kal~~~p~~~~~~-~la~~~~~~g~~~~A~~~~~~a 903 (929)
++++++|++...+ .++.++..+|++++|++.+.+.
T Consensus 283 ~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 283 QAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999987654 7799999999999999877654
No 76
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.78 E-value=9.6e-18 Score=193.92 Aligned_cols=212 Identities=10% Similarity=-0.004 Sum_probs=197.8
Q ss_pred hhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCH-HHHHHHHHHHhcccC-CHhHHHHHHHHHHHhccHHHHHHHHHHH
Q 002379 497 GREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQI-RAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLAL 574 (929)
Q Consensus 497 ~~~Ai~~~~kal~l~P~~~~a~~~~a~~~~~~g~~-~~A~~~~~~al~~~~-~~~~~~~~a~~~~~~g~~~~A~~~~~~a 574 (929)
.++++..+++....+|.++.+++.+|.++...|++ ++|+..|+++++.+| ++..+..+|.++...|++++|+..|+++
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 163 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGA 163 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34788888899999999999999999999999999 999999999999998 7889999999999999999999999999
Q ss_pred HhhcCCchhhhccccHHHHHHHHHHhh---------cccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHH
Q 002379 575 LALESNYMMFHGRVSGDHLVKLLNHHV---------RSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFR 645 (929)
Q Consensus 575 l~~~p~~~~~~~~~~a~~ll~~~~~~~---------~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~ 645 (929)
++++|+ . .++..++.++... |++++|...+ +++++.+|+++.+|+.
T Consensus 164 l~~~p~-~------~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~------------------~~al~~~p~~~~~~~~ 218 (474)
T 4abn_A 164 LTHCKN-K------VSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQA------------------KLAVQMDVLDGRSWYI 218 (474)
T ss_dssp HTTCCC-H------HHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHH------------------HHHHHHCTTCHHHHHH
T ss_pred HhhCCC-H------HHHHHHHHHHHHhccCChhhhhhhHHHHHHHH------------------HHHHHhCCCCHHHHHH
Confidence 999998 5 6777899999999 9999996665 9999999999999999
Q ss_pred HHHHHHHh--------cCHHHHHHHHHHHHhcCC---chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch-HHHHHH
Q 002379 646 QSLLLLRL--------NCQKAAMRCLRLARNHSS---SEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLK 713 (929)
Q Consensus 646 lg~~~~~~--------g~~~~A~~~l~~al~~~p---~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~~~~~l 713 (929)
+|.+|..+ |++++|+..|+++++++| .++.++..+|.+|...|++++|+..|+++++++|++ .++..+
T Consensus 219 lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l 298 (474)
T 4abn_A 219 LGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQRE 298 (474)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 99999999 999999999999999999 999999999999999999999999999999999999 899999
Q ss_pred HHHHHhcCCCCCChHHHHHHHHHHhhchhcc
Q 002379 714 AYILADTNLDPESSTYVIQLLEEALRCPSDG 744 (929)
Q Consensus 714 ~~~l~~~~~~~~~~~~a~~~~e~Al~~~~~a 744 (929)
+.++...+ ++++|++.+.+.
T Consensus 299 ~~~~~~lg-----------~~~eAi~~~~~~ 318 (474)
T 4abn_A 299 QQLLEFLS-----------RLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHH-----------HHHHHHHHTTTC
T ss_pred HHHHHHHH-----------HHHHHHHHhccc
Confidence 99988877 888888766655
No 77
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}
Probab=99.78 E-value=3.3e-20 Score=173.21 Aligned_cols=102 Identities=15% Similarity=0.164 Sum_probs=84.2
Q ss_pred hhccCCCC-CCEEEEEcCeEEEeehhHHhccCHHHHHHhcCCCCcCCCCeeEecCC-CCCHHHHHHHhhhHccCCCCCCC
Q 002379 210 VCLSLEED-DSVTFCVRDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHD-GVSVEGLRAVEVYTRTSRVDLFC 287 (929)
Q Consensus 210 ~~~~~~~~-~~v~~~v~~~~~~~hr~iLaa~S~~F~~mf~~~~~e~~~~~i~~~~~-~~~~~~~~~~l~~~Yt~~~~~~~ 287 (929)
..+..++. .||+|+|+|++|+|||.||+++|+||++||.++ ....|+| + ++++++|+.+|+|+|||+++ ++
T Consensus 25 ~~l~~~~~~~Dv~l~v~~~~~~~Hk~vLaa~S~~F~~~f~~~----~~~~i~l--~~~~~~~~f~~ll~~iYtg~~~-i~ 97 (129)
T 3ga1_A 25 NEQRLQGLYCDVSVVVKGHAFKAHRAVLAASSSYFRDLFNNS----RSAVVEL--PAAVQPQSFQQILSFCYTGRLS-MN 97 (129)
T ss_dssp HHHHHTTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHHHC----CCSEEEC--CTTCCHHHHHHHHHHHHHSEEE-CC
T ss_pred HHHHhcCCCcceEEEECCEEEEehHHHHHHcCHHHHHHHcCC----CCCEEEE--CCCCCHHHHHHHHHHHhCCccc-cC
Confidence 33333444 449999999999999999999999999999987 5678999 7 89999999999999999999 99
Q ss_pred hhHHHHHHHHhchhChHhHHHHHHHHHHhhc
Q 002379 288 PGIVLELLSFANRFCCEEMKSACDAHLASLV 318 (929)
Q Consensus 288 ~~~~~~ll~~A~~~~~~~l~~~C~~~l~~~~ 318 (929)
.+++.+|+.+|++|+++.|++.|+++|.+..
T Consensus 98 ~~~~~~ll~~A~~~~i~~l~~~C~~~L~~~~ 128 (129)
T 3ga1_A 98 VGDQDLLMYTAGFLQIQEIMEKGTEFFLKVS 128 (129)
T ss_dssp TTTHHHHHHHHHHTTBTTSSCC---------
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999998653
No 78
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.78 E-value=2.4e-17 Score=170.61 Aligned_cols=211 Identities=10% Similarity=0.037 Sum_probs=152.3
Q ss_pred CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHH
Q 002379 637 PGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSS-SEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAY 715 (929)
Q Consensus 637 p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p-~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~l~~ 715 (929)
+.++..++.+|.++...|++++|+..|+++++.+| .+..+++.+|.++...|++++|+..|+++++.+|++
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-------- 75 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNL-------- 75 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSH--------
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcch--------
Confidence 45667788888888888888888888888888887 777777778888888888888888888888777765
Q ss_pred HHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcCC--CH-------HHHHHH
Q 002379 716 ILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIK--HT-------RAHQGL 786 (929)
Q Consensus 716 ~l~~~~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~--~~-------~a~~~l 786 (929)
..++..+|.++...|++++|+..|+++++.. ++ .++..+
T Consensus 76 --------------------------------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 123 (228)
T 4i17_A 76 --------------------------------ANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKE 123 (228)
T ss_dssp --------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred --------------------------------HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHH
Confidence 4456677777777777777777777777663 33 234555
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHhhhCCHHHHHHHHHHHHhcCCC--CcHHHHHHHHHHHhcCCHHHHH
Q 002379 787 ARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPL--RTYPYRYRAAVLMDDQKEVEAV 864 (929)
Q Consensus 787 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~g~~~~A~~~~~~al~l~p~--~~~~~~~la~~~~~~g~~~eA~ 864 (929)
|.++... |++++|+..|+++++++|+ ++.++..+|.++...| .
T Consensus 124 g~~~~~~------------------------------~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~-----~ 168 (228)
T 4i17_A 124 GQKFQQA------------------------------GNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNG-----A 168 (228)
T ss_dssp HHHHHHT------------------------------TCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHH-----H
T ss_pred hHHHHHh------------------------------ccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHH-----H
Confidence 5555444 4555555555556666666 6677778888886544 4
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHhh
Q 002379 865 EELSKAIAFKPDLQMLHLRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNRARDQ 923 (929)
Q Consensus 865 ~~l~kal~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~l~~~ 923 (929)
..++++..+.+..... ..+......+++++|+.+|+++++++|+++++...++++...
T Consensus 169 ~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~~ 226 (228)
T 4i17_A 169 DVLRKATPLASSNKEK-YASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKAM 226 (228)
T ss_dssp HHHHHHGGGTTTCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHhcccCCHHH-HHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHh
Confidence 4566777776655333 344555667889999999999999999999999999988764
No 79
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.78 E-value=1.2e-17 Score=181.60 Aligned_cols=216 Identities=14% Similarity=0.053 Sum_probs=194.2
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHH-------cCCH-------HHHHHHHHHHHh-hccchHHHHHHHHHHHhcC
Q 002379 657 KAAMRCLRLARNHSSSEHERLVYEGWILYD-------TGHR-------EEALSRAEKSIS-IERTFEAFFLKAYILADTN 721 (929)
Q Consensus 657 ~~A~~~l~~al~~~p~~~~~~~~lg~~~~~-------~g~~-------~eA~~~~~~al~-~~p~~~~~~~l~~~l~~~~ 721 (929)
++|+..|++++..+|.++.+|+.+|..+.. .|++ ++|+..|+++++ ++|++
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~-------------- 98 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKN-------------- 98 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTC--------------
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCccc--------------
Confidence 789999999999999999999999999874 5886 999999999999 68877
Q ss_pred CCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcCC--CHH-HHHHHHHHHHHhCCHHH
Q 002379 722 LDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIK--HTR-AHQGLARVYYLKNELKA 798 (929)
Q Consensus 722 ~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~--~~~-a~~~la~~~~~~g~~~~ 798 (929)
..+|..+|.++...|++++|...|++++++. ++. +|..+|.++...|++++
T Consensus 99 --------------------------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~ 152 (308)
T 2ond_A 99 --------------------------MLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKS 152 (308)
T ss_dssp --------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHH
T ss_pred --------------------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHH
Confidence 4568888999999999999999999999984 345 89999999999999999
Q ss_pred HHHHHHHHHHHccCCHHHHHHHh--h---hCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 002379 799 AYDEMTKLLEKAQYSASAFEKRS--E---YSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAF 873 (929)
Q Consensus 799 A~~~~~~al~~~p~~~~~~~~lg--~---~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~ 873 (929)
|...|+++++..|.+..+|...+ . .|++++|+..|+++++.+|.++.+|..+|.++...|++++|+..|++++..
T Consensus 153 A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 232 (308)
T 2ond_A 153 GRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 232 (308)
T ss_dssp HHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 99999999999999988887766 2 599999999999999999999999999999999999999999999999996
Q ss_pred ---CCC-chHHH-HHHHHHHHcCCHHHHHHHHHHHhccCCCCHH
Q 002379 874 ---KPD-LQMLH-LRAAFYESIGDLTSAIRDSQAALCLDPNHME 912 (929)
Q Consensus 874 ---~p~-~~~~~-~la~~~~~~g~~~~A~~~~~~al~l~P~~~~ 912 (929)
.|+ ...++ ..+.++...|+.++|...++++++..|++.+
T Consensus 233 ~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~~ 276 (308)
T 2ond_A 233 GSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYE 276 (308)
T ss_dssp SSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTS
T ss_pred cCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccccc
Confidence 443 44444 5689999999999999999999999998654
No 80
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.77 E-value=5.4e-17 Score=170.31 Aligned_cols=204 Identities=12% Similarity=-0.012 Sum_probs=140.8
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHH
Q 002379 551 LELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVIN 630 (929)
Q Consensus 551 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~ 630 (929)
+..+|.++...|++++|+..|+++++.+|++. .++..++.++...|++++|...+ .
T Consensus 40 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~------~~~~~la~~~~~~~~~~~A~~~~------------------~ 95 (252)
T 2ho1_A 40 YIQLGLGYLQRGNTEQAKVPLRKALEIDPSSA------DAHAALAVVFQTEMEPKLADEEY------------------R 95 (252)
T ss_dssp HHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCH------HHHHHHHHHHHHTTCHHHHHHHH------------------H
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCCChH------HHHHHHHHHHHHcCCHHHHHHHH------------------H
Confidence 34444444444444444444444444444443 33344444444444444443333 4
Q ss_pred HHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchH
Q 002379 631 QMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARN--HSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFE 708 (929)
Q Consensus 631 ~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~--~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~ 708 (929)
++++.+|.++.++..+|.++...|++++|+..++++++ ..|.++.++..+|.++...|++++|+..++++++..|++
T Consensus 96 ~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~- 174 (252)
T 2ho1_A 96 KALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQ- 174 (252)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC-
T ss_pred HHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccc-
Confidence 44444555556667778888888888888888888888 777778888888888888888888888888888877765
Q ss_pred HHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC--CCHHHHHHH
Q 002379 709 AFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI--KHTRAHQGL 786 (929)
Q Consensus 709 ~~~~l~~~l~~~~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~--~~~~a~~~l 786 (929)
..++..+|.++...|++++|+..|+++++. ....++..+
T Consensus 175 ---------------------------------------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 215 (252)
T 2ho1_A 175 ---------------------------------------PSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLG 215 (252)
T ss_dssp ---------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHH
T ss_pred ---------------------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHH
Confidence 344677788888888888888888888877 456778888
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHccCCHHHHH
Q 002379 787 ARVYYLKNELKAAYDEMTKLLEKAQYSASAFE 818 (929)
Q Consensus 787 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 818 (929)
+.++...|++++|...++++++..|++.....
T Consensus 216 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 247 (252)
T 2ho1_A 216 IRLAKVFEDRDTAASYGLQLKRLYPGSLEYQE 247 (252)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 88888888888888888888888888877654
No 81
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.77 E-value=3.2e-17 Score=184.22 Aligned_cols=233 Identities=10% Similarity=0.074 Sum_probs=184.1
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhc---CC---chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch-HHHHHHH
Q 002379 642 LRFRQSLLLLRLNCQKAAMRCLRLARNH---SS---SEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKA 714 (929)
Q Consensus 642 ~~~~lg~~~~~~g~~~~A~~~l~~al~~---~p---~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~~~~~l~ 714 (929)
.++.+|..+...|++++|+..|++++++ .+ ..+.++..+|.++...|++++|+..+++++++.+.. ....
T Consensus 105 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~--- 181 (383)
T 3ulq_A 105 FNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNI--- 181 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHH---
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchH---
Confidence 3455999999999999999999999987 22 346889999999999999999999999999986654 1000
Q ss_pred HHHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC----CCH----HHHHHH
Q 002379 715 YILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI----KHT----RAHQGL 786 (929)
Q Consensus 715 ~~l~~~~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~----~~~----~a~~~l 786 (929)
....++.++|.++...|++++|+.+|++++++ ++. .++.++
T Consensus 182 -------------------------------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 230 (383)
T 3ulq_A 182 -------------------------------RLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNI 230 (383)
T ss_dssp -------------------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -------------------------------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 01345788889999999999999999988877 211 478888
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHH-----c-cCCHHHHHHHh----hhCCHHHHHHHHHHHHhcC-----CCCcHHHHHHH
Q 002379 787 ARVYYLKNELKAAYDEMTKLLEK-----A-QYSASAFEKRS----EYSDREMAKNDLNMATQLD-----PLRTYPYRYRA 851 (929)
Q Consensus 787 a~~~~~~g~~~~A~~~~~~al~~-----~-p~~~~~~~~lg----~~g~~~~A~~~~~~al~l~-----p~~~~~~~~la 851 (929)
|.+|...|++++|+..++++++. + |....++..+| ..|++++|+..+++++++. |.....+..+|
T Consensus 231 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~ 310 (383)
T 3ulq_A 231 GLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLK 310 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999999999999998883 4 66666777777 5688899999999888873 33334467799
Q ss_pred HHHHhcCC---HHHHHHHHHHHHhcCCCch-HHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 002379 852 AVLMDDQK---EVEAVEELSKAIAFKPDLQ-MLHLRAAFYESIGDLTSAIRDSQAALCLDPN 909 (929)
Q Consensus 852 ~~~~~~g~---~~eA~~~l~kal~~~p~~~-~~~~la~~~~~~g~~~~A~~~~~~al~l~P~ 909 (929)
.++...|+ +++|+..+++. ...|... .+..+|.+|..+|++++|..+|++++++...
T Consensus 311 ~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~ 371 (383)
T 3ulq_A 311 SLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQL 371 (383)
T ss_dssp HHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTS
T ss_pred HHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 99999999 88888888876 2222222 3337799999999999999999999987543
No 82
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0
Probab=99.76 E-value=3.8e-19 Score=162.47 Aligned_cols=90 Identities=14% Similarity=0.131 Sum_probs=81.5
Q ss_pred CCCCCEEEEEcCeEEEeehhHHhccCHHHHHHhcCCCCcCCCCeeEecCCCCCHHHHHHHhhhHccCCCCCCChhHHHHH
Q 002379 215 EEDDSVTFCVRDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFCPGIVLEL 294 (929)
Q Consensus 215 ~~~~~v~~~v~~~~~~~hr~iLaa~S~~F~~mf~~~~~e~~~~~i~~~~~~~~~~~~~~~l~~~Yt~~~~~~~~~~~~~l 294 (929)
+...||+|+|+|++|+|||+|||++|+||++ ....|+| +++++++|+.+|+|+|||++. ++.+++.++
T Consensus 28 ~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~---------~~~~i~l--~~v~~~~f~~ll~fiYtg~~~-i~~~~v~~l 95 (119)
T 3m5b_A 28 PALCDTLITVGSQEFPAHSLVLAGVSQQLGR---------RGQWALG--EGISPSTFAQLLNFVYGESVE-LQPGELRPL 95 (119)
T ss_dssp TTTCCEEEEETTEEEEECHHHHHTTCGGGCC---------CEEEECC--SSCCHHHHHHHHHHHTTCCEE-ECGGGHHHH
T ss_pred CCCcceEEEECCEEEeeEHHHHHHcCHHHhc---------CCCEEEe--CCCCHHHHHHHHHHHcCCCcC-cCHHHHHHH
Confidence 3444599999999999999999999999985 3467899 999999999999999999999 999999999
Q ss_pred HHHhchhChHhHHHHHHHHHHh
Q 002379 295 LSFANRFCCEEMKSACDAHLAS 316 (929)
Q Consensus 295 l~~A~~~~~~~l~~~C~~~l~~ 316 (929)
|.+|++|+++.|++.|++++.+
T Consensus 96 l~aA~~l~i~~l~~~C~~~~~~ 117 (119)
T 3m5b_A 96 QEAARALGVQSLEEACWRARGD 117 (119)
T ss_dssp HHHHHHTTCHHHHHHHHHHC--
T ss_pred HHHHHHhCCHHHHHHHHHHHhh
Confidence 9999999999999999999875
No 83
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.76 E-value=2.6e-16 Score=176.75 Aligned_cols=242 Identities=9% Similarity=0.026 Sum_probs=193.8
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHhcccC-------CHhHHHHHHHHHHHhccHHHHHHHHHHHHhhcCCchh-hhccc
Q 002379 517 PYKYRAVAKMEEGQIRAAISEIDRIIVFKL-------SVDCLELRAWLFIAADDYESALRDTLALLALESNYMM-FHGRV 588 (929)
Q Consensus 517 a~~~~a~~~~~~g~~~~A~~~~~~al~~~~-------~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~~ 588 (929)
.++.+|..+...|++++|+..|++++.+.. .+..+..+|.++...|++++|+..+++++++.+.... .....
T Consensus 105 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 184 (383)
T 3ulq_A 105 FNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLL 184 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHH
Confidence 455699999999999999999999997622 3456899999999999999999999999998776652 22333
Q ss_pred cHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCC------hHHHHHHHHHHHHhcCHHHHHHH
Q 002379 589 SGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGK------SFLRFRQSLLLLRLNCQKAAMRC 662 (929)
Q Consensus 589 ~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~ 662 (929)
.++..+|.++...|++++|...+ .++++..+.. +.++.++|.+|..+|++++|+..
T Consensus 185 ~~~~~lg~~~~~~g~~~~A~~~~------------------~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~ 246 (383)
T 3ulq_A 185 QCHSLFATNFLDLKQYEDAISHF------------------QKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPY 246 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHH------------------HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHH------------------HHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 67888999999999999996666 7777664332 35889999999999999999999
Q ss_pred HHHHHh-----cC-CchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch-HHHHHHHHHHHhcCCCCCChHHHHHHHH
Q 002379 663 LRLARN-----HS-SSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLE 735 (929)
Q Consensus 663 l~~al~-----~~-p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~~~~~l~~~l~~~~~~~~~~~~a~~~~e 735 (929)
++++++ .+ |..+.++..+|.++...|++++|+..+++++++.+.. ....
T Consensus 247 ~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~------------------------ 302 (383)
T 3ulq_A 247 FKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIY------------------------ 302 (383)
T ss_dssp HHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH------------------------
T ss_pred HHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHH------------------------
Confidence 999998 56 7888999999999999999999999999999876543 0000
Q ss_pred HHhhchhccCchhHHHHHHHHHHHHcCC---HHHHHHHHHHHHcC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcc
Q 002379 736 EALRCPSDGLRKGQALNNLGSIYVECGK---LDQAENCYINALDI-KHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQ 811 (929)
Q Consensus 736 ~Al~~~~~al~~~~a~~~lg~~~~~~g~---~~eA~~~~~~al~~-~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p 811 (929)
...+..+|.++...|+ +++|+..+++.-.. ....++..+|.+|...|++++|...++++++...
T Consensus 303 ------------~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 303 ------------LSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp ------------HHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred ------------HHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 1124568888888888 77777777776222 2335788899999999999999999999887654
Q ss_pred C
Q 002379 812 Y 812 (929)
Q Consensus 812 ~ 812 (929)
.
T Consensus 371 ~ 371 (383)
T 3ulq_A 371 L 371 (383)
T ss_dssp S
T ss_pred H
Confidence 3
No 84
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.75 E-value=1.4e-16 Score=163.30 Aligned_cols=210 Identities=14% Similarity=0.066 Sum_probs=125.8
Q ss_pred CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccC-CHhHHHHHHHHHHHhccHHHHHHHHHHHHhhcCCchhhhcccc
Q 002379 511 DPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVS 589 (929)
Q Consensus 511 ~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 589 (929)
+|+++.+++.+|.++...|++++|+..|++++...| ++..+..+|.++...|++++|+..++++++.+|++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~------- 76 (225)
T 2vq2_A 4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSA------- 76 (225)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-------
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh-------
Confidence 455666677777777777777777777777766665 455666666666666777777666666666665554
Q ss_pred HHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHHHHh-cCHHHHHHHHHHHHh
Q 002379 590 GDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRL-NCQKAAMRCLRLARN 668 (929)
Q Consensus 590 a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~lg~~~~~~-g~~~~A~~~l~~al~ 668 (929)
.++..+|.++... |++++|+..++++++
T Consensus 77 ---------------------------------------------------~~~~~l~~~~~~~~~~~~~A~~~~~~~~~ 105 (225)
T 2vq2_A 77 ---------------------------------------------------EINNNYGWFLCGRLNRPAESMAYFDKALA 105 (225)
T ss_dssp ---------------------------------------------------HHHHHHHHHHHTTTCCHHHHHHHHHHHHT
T ss_pred ---------------------------------------------------HHHHHHHHHHHHhcCcHHHHHHHHHHHHc
Confidence 3444455555555 555555555555555
Q ss_pred --cCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCc
Q 002379 669 --HSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLR 746 (929)
Q Consensus 669 --~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~l~~~l~~~~~~~~~~~~a~~~~e~Al~~~~~al~ 746 (929)
..|....++..+|.++...|++++|+..++++++..|++
T Consensus 106 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--------------------------------------- 146 (225)
T 2vq2_A 106 DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQF--------------------------------------- 146 (225)
T ss_dssp STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---------------------------------------
T ss_pred CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------------------------------
Confidence 444445555555555555555555555555555555544
Q ss_pred hhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC---CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHH
Q 002379 747 KGQALNNLGSIYVECGKLDQAENCYINALDI---KHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFE 818 (929)
Q Consensus 747 ~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~---~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 818 (929)
..++..+|.++...|++++|+..++++++. .++..+..++.++...|+.++|...++.+....|+++.+..
T Consensus 147 -~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 220 (225)
T 2vq2_A 147 -PPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQT 220 (225)
T ss_dssp -HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred -chHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHH
Confidence 223445555555555555555555555554 22345555566666666666666666666666676666544
No 85
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.74 E-value=1.9e-17 Score=198.97 Aligned_cols=174 Identities=12% Similarity=-0.012 Sum_probs=165.6
Q ss_pred cCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccC-CHhHHHHHHHHHHHhccHHHHHHHHHHHHhhcCCchhhhccc
Q 002379 510 LDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRV 588 (929)
Q Consensus 510 l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 588 (929)
..|+++.+|.++|.++.++|++++|+..|+++++++| ++..+.++|.++..+|++++|+..|+++++++|++.
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~------ 77 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFA------ 77 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH------
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------
Confidence 4689999999999999999999999999999999999 788999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 002379 589 SGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARN 668 (929)
Q Consensus 589 ~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~ 668 (929)
.++..+|.++...|++++|+..+ +++++++|+++.++.++|.+|..+|++++|+..|+++++
T Consensus 78 ~a~~nLg~~l~~~g~~~~A~~~~------------------~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~ 139 (723)
T 4gyw_A 78 DAYSNMGNTLKEMQDVQGALQCY------------------TRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALK 139 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHH------------------HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHH------------------HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 88889999999999999995555 999999999999999999999999999999999999999
Q ss_pred cCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch
Q 002379 669 HSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF 707 (929)
Q Consensus 669 ~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~ 707 (929)
++|+++.++.++|.++...|++++|.+.+++++++.|+.
T Consensus 140 l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~~ 178 (723)
T 4gyw_A 140 LKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQ 178 (723)
T ss_dssp HCSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHH
T ss_pred hCCCChHHHhhhhhHHHhcccHHHHHHHHHHHHHhChhH
Confidence 999999999999999999999999999999999987754
No 86
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.74 E-value=1.8e-17 Score=199.28 Aligned_cols=172 Identities=21% Similarity=0.179 Sum_probs=128.0
Q ss_pred cCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHH
Q 002379 635 NDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKA 714 (929)
Q Consensus 635 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~l~ 714 (929)
..|+++.++.++|.+|..+|++++|+..|+++++++|+++.++.++|.+|.++|++++|+..|+++++++|++
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~------- 76 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF------- 76 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------
Confidence 3577777888888888888888888888888888888888888888888888888888888888888877766
Q ss_pred HHHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHH
Q 002379 715 YILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI--KHTRAHQGLARVYYL 792 (929)
Q Consensus 715 ~~l~~~~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~--~~~~a~~~la~~~~~ 792 (929)
..+++++|.++..+|++++|+++|++++++ ++..++.++|.+|..
T Consensus 77 ---------------------------------~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~ 123 (723)
T 4gyw_A 77 ---------------------------------ADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKD 123 (723)
T ss_dssp ---------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred ---------------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 455677777777777777777777777766 445667777777776
Q ss_pred hCCHHHHHHHHHHHHHHccCCHHHHHHHhhhCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 002379 793 KNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIA 872 (929)
Q Consensus 793 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~ 872 (929)
+|++++|+..|++++++ +|+++.++.++|.++...|++++|++.++++++
T Consensus 124 ~g~~~eAi~~~~~Al~l------------------------------~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 124 SGNIPEAIASYRTALKL------------------------------KPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp TTCHHHHHHHHHHHHHH------------------------------CSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh------------------------------CCCChHHHhhhhhHHHhcccHHHHHHHHHHHHH
Confidence 66666666665555554 555666677788888888888888888888887
Q ss_pred cCCC
Q 002379 873 FKPD 876 (929)
Q Consensus 873 ~~p~ 876 (929)
+.|+
T Consensus 174 l~~~ 177 (723)
T 4gyw_A 174 IVAD 177 (723)
T ss_dssp HHHH
T ss_pred hChh
Confidence 6543
No 87
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.74 E-value=9.8e-17 Score=165.93 Aligned_cols=181 Identities=9% Similarity=0.040 Sum_probs=159.3
Q ss_pred CCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccC--CHhHHHHHHHHHHHhccHHHHHHHHHHHHhhcCCchhhhcccc
Q 002379 512 PTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL--SVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVS 589 (929)
Q Consensus 512 P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 589 (929)
+.++..++.+|.+++..|++++|+..|+++++..| ++..+..+|.++...|++++|+..|+++++.+|++. .
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~------~ 77 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLA------N 77 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHH------H
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchH------H
Confidence 45678889999999999999999999999998874 667788889999999999999999999999999888 7
Q ss_pred HHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCCh-------HHHHHHHHHHHHhcCHHHHHHH
Q 002379 590 GDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKS-------FLRFRQSLLLLRLNCQKAAMRC 662 (929)
Q Consensus 590 a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~~p~~~-------~~~~~lg~~~~~~g~~~~A~~~ 662 (929)
++..+|.++...|++++|...+ +++++.+|+++ .++..+|.++...|++++|+..
T Consensus 78 ~~~~l~~~~~~~~~~~~A~~~~------------------~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~ 139 (228)
T 4i17_A 78 AYIGKSAAYRDMKNNQEYIATL------------------TEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEEN 139 (228)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHH------------------HHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHH------------------HHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHH
Confidence 7888999999999999885555 88999999888 6699999999999999999999
Q ss_pred HHHHHhcCCc--hHHHHHHHHHHHHHcCCH---------------------------HHHHHHHHHHHhhccch-HHHHH
Q 002379 663 LRLARNHSSS--EHERLVYEGWILYDTGHR---------------------------EEALSRAEKSISIERTF-EAFFL 712 (929)
Q Consensus 663 l~~al~~~p~--~~~~~~~lg~~~~~~g~~---------------------------~eA~~~~~~al~~~p~~-~~~~~ 712 (929)
|+++++.+|+ ++.++..+|.++...|+. ++|+..|+++++++|++ .+...
T Consensus 140 ~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~ 219 (228)
T 4i17_A 140 YKHATDVTSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQM 219 (228)
T ss_dssp HHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHH
Confidence 9999999999 999999999999999998 99999999999999998 55554
Q ss_pred HHHH
Q 002379 713 KAYI 716 (929)
Q Consensus 713 l~~~ 716 (929)
++.+
T Consensus 220 l~~i 223 (228)
T 4i17_A 220 QDQV 223 (228)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 88
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A
Probab=99.74 E-value=4.3e-18 Score=155.19 Aligned_cols=88 Identities=14% Similarity=0.145 Sum_probs=80.3
Q ss_pred CCCCCCEEEEEcCeEEEeehhHHhccCHHHHHHhcCCCCcCCCCeeEecCCCCCHHHHHHHhhhHccCCCCCCChhHHHH
Q 002379 214 LEEDDSVTFCVRDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFCPGIVLE 293 (929)
Q Consensus 214 ~~~~~~v~~~v~~~~~~~hr~iLaa~S~~F~~mf~~~~~e~~~~~i~~~~~~~~~~~~~~~l~~~Yt~~~~~~~~~~~~~ 293 (929)
.+...||+|+|+|++|+|||.|||++|+||++||.++ ...|++ +++++++|+.+|+|+|||++..++.+++.+
T Consensus 28 ~~~~~Dv~l~v~~~~f~aHk~vLaa~S~~F~~~f~~~-----~~~i~l--~~~~~~~f~~~l~~~Ytg~~~~~~~~~~~~ 100 (116)
T 3fkc_A 28 HGLFCDVTVIVEDRKFRAHKNILSASSTYFHQLFSVA-----GQVVEL--SFIRAEIFAEILNYIYSSKIVRVRSDLLDE 100 (116)
T ss_dssp HTTTCCEEEEETTEEEEECHHHHHHHCHHHHHHTTSC-----CSEEEE--CSSCHHHHHHHHHHHTTSCCCSCCHHHHHH
T ss_pred cCCceeEEEEECCEEEehhHHHHHHcCHHHHHHHcCC-----CCEEEe--CCCCHHHHHHHHHhhcCCCcCCCCHHHHHH
Confidence 3444459999999999999999999999999999986 568999 999999999999999999994499999999
Q ss_pred HHHHhchhChHhHHH
Q 002379 294 LLSFANRFCCEEMKS 308 (929)
Q Consensus 294 ll~~A~~~~~~~l~~ 308 (929)
++.+|++|+++.|+.
T Consensus 101 ll~~A~~l~i~~L~~ 115 (116)
T 3fkc_A 101 LIKSGQLLGVKFIAA 115 (116)
T ss_dssp HHHHHHHHTCHHHHT
T ss_pred HHHHHHHhCccccCc
Confidence 999999999999974
No 89
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.72 E-value=5.7e-16 Score=173.67 Aligned_cols=232 Identities=13% Similarity=0.078 Sum_probs=188.2
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCC------chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHH
Q 002379 642 LRFRQSLLLLRLNCQKAAMRCLRLARNHSS------SEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAY 715 (929)
Q Consensus 642 ~~~~lg~~~~~~g~~~~A~~~l~~al~~~p------~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~l~~ 715 (929)
.++.+|..+...|++++|+..|+++++..+ ..+.++..+|.+|...|++++|+..+++++++.+....
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~------ 176 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPL------ 176 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTT------
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCC------
Confidence 577899999999999999999999998732 34678999999999999999999999999988765400
Q ss_pred HHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC----CC----HHHHHHHH
Q 002379 716 ILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI----KH----TRAHQGLA 787 (929)
Q Consensus 716 ~l~~~~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~----~~----~~a~~~la 787 (929)
+. .....++.++|.++...|++++|+.+|++++++ ++ ..++.++|
T Consensus 177 ------------------~~---------~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg 229 (378)
T 3q15_A 177 ------------------YS---------IRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIA 229 (378)
T ss_dssp ------------------CH---------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ------------------ch---------hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 00 001356889999999999999999999999987 22 25788999
Q ss_pred HHHHHhCCHHHHHHHHHHHHH-----HccCCHHHHHHHh----hhCCHHHHHHHHHHHHhcCC-----CCcHHHHHHHHH
Q 002379 788 RVYYLKNELKAAYDEMTKLLE-----KAQYSASAFEKRS----EYSDREMAKNDLNMATQLDP-----LRTYPYRYRAAV 853 (929)
Q Consensus 788 ~~~~~~g~~~~A~~~~~~al~-----~~p~~~~~~~~lg----~~g~~~~A~~~~~~al~l~p-----~~~~~~~~la~~ 853 (929)
.+|...|++++|+..++++++ .+|....++..+| ..|++++|+..+++++++.+ .....+..++.+
T Consensus 230 ~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~l 309 (378)
T 3q15_A 230 NSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAV 309 (378)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999999998 6677777888888 67999999999999998744 344556778888
Q ss_pred HHhcCC---HHHHHHHHHHHHhcCCCch-HHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 002379 854 LMDDQK---EVEAVEELSKAIAFKPDLQ-MLHLRAAFYESIGDLTSAIRDSQAALCLD 907 (929)
Q Consensus 854 ~~~~g~---~~eA~~~l~kal~~~p~~~-~~~~la~~~~~~g~~~~A~~~~~~al~l~ 907 (929)
+...++ +.+|+..+++. ...|... .+..+|.+|...|++++|..+|++++++.
T Consensus 310 y~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 310 YKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp HSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 889998 88888888872 1222222 33367999999999999999999998753
No 90
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.72 E-value=2.7e-17 Score=177.93 Aligned_cols=234 Identities=15% Similarity=0.081 Sum_probs=143.0
Q ss_pred CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc---
Q 002379 636 DPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNH--------SSSEHERLVYEGWILYDTGHREEALSRAEKSISIE--- 704 (929)
Q Consensus 636 ~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~--------~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~--- 704 (929)
+|..+.++..+|.++...|++++|+..++++++. .|....++..+|.++...|++++|+..+++++.+.
T Consensus 23 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 102 (311)
T 3nf1_A 23 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKT 102 (311)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 5677889999999999999999999999999984 67778899999999999999999999999999873
Q ss_pred -----cchHHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcCC-
Q 002379 705 -----RTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIK- 778 (929)
Q Consensus 705 -----p~~~~~~~l~~~l~~~~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~- 778 (929)
|.. ..++..+|.++...|++++|+.+|++++++.
T Consensus 103 ~~~~~~~~----------------------------------------~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 142 (311)
T 3nf1_A 103 LGKDHPAV----------------------------------------AATLNNLAVLYGKRGKYKEAEPLCKRALEIRE 142 (311)
T ss_dssp HCTTCHHH----------------------------------------HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred hCCCChHH----------------------------------------HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHH
Confidence 222 2234445555555555555555555554430
Q ss_pred ------C---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--------ccCCHHHHHHHh----hhCCHHHHHHHHHHHH
Q 002379 779 ------H---TRAHQGLARVYYLKNELKAAYDEMTKLLEK--------AQYSASAFEKRS----EYSDREMAKNDLNMAT 837 (929)
Q Consensus 779 ------~---~~a~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg----~~g~~~~A~~~~~~al 837 (929)
+ ..++..+|.++...|++++|+..++++++. .|....++..+| ..|++++|+..+++++
T Consensus 143 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 222 (311)
T 3nf1_A 143 KVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEIL 222 (311)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 1 124445555555555555555555555544 333333344444 3345555555555554
Q ss_pred hc---------CCCCcHHHH------HHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHH-HHHHHHHHcCCHHHHHHHHH
Q 002379 838 QL---------DPLRTYPYR------YRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLH-LRAAFYESIGDLTSAIRDSQ 901 (929)
Q Consensus 838 ~l---------~p~~~~~~~------~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~-~la~~~~~~g~~~~A~~~~~ 901 (929)
+. ++.....+. ..+..+...+.+.+|+..++++....|.....+ .+|.+|..+|++++|+.+|+
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 302 (311)
T 3nf1_A 223 TRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEE 302 (311)
T ss_dssp HHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 32 222222333 333344455566677778888877777665544 67999999999999999999
Q ss_pred HHhccCCC
Q 002379 902 AALCLDPN 909 (929)
Q Consensus 902 ~al~l~P~ 909 (929)
+++++.|+
T Consensus 303 ~al~l~~~ 310 (311)
T 3nf1_A 303 AAMRSRKQ 310 (311)
T ss_dssp HHHHHHC-
T ss_pred HHHHHhhc
Confidence 99988775
No 91
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.71 E-value=2.2e-16 Score=167.10 Aligned_cols=208 Identities=12% Similarity=0.039 Sum_probs=151.4
Q ss_pred hcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCch---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHH
Q 002379 634 INDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE---HERLVYEGWILYDTGHREEALSRAEKSISIERTFEAF 710 (929)
Q Consensus 634 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~---~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~ 710 (929)
..+|.++..++.+|..+...|++++|+..|+++++.+|++ +.+++.+|.++...|++++|+..|+++++..|++.
T Consensus 9 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~-- 86 (261)
T 3qky_A 9 RLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDP-- 86 (261)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT--
T ss_pred CCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCc--
Confidence 4467777788888888888888888888888888887777 77778888888888888888888888887777540
Q ss_pred HHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 002379 711 FLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIKHTRAHQGLARVY 790 (929)
Q Consensus 711 ~~l~~~l~~~~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~~~a~~~la~~~ 790 (929)
..+.+++.+|.++
T Consensus 87 -------------------------------------------------------------------~~~~a~~~lg~~~ 99 (261)
T 3qky_A 87 -------------------------------------------------------------------RVPQAEYERAMCY 99 (261)
T ss_dssp -------------------------------------------------------------------THHHHHHHHHHHH
T ss_pred -------------------------------------------------------------------hhHHHHHHHHHHH
Confidence 0012344445555
Q ss_pred HH--------hCCHHHHHHHHHHHHHHccCCHHHHHHHhhhCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHH
Q 002379 791 YL--------KNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVE 862 (929)
Q Consensus 791 ~~--------~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~e 862 (929)
.. .|++++|+..|+++++..|++..+...+.. .....+.....++.+|.+|...|++++
T Consensus 100 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~-------------~~~~~~~~~~~~~~la~~~~~~g~~~~ 166 (261)
T 3qky_A 100 YKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQK-------------IRELRAKLARKQYEAARLYERRELYEA 166 (261)
T ss_dssp HHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHccCHHH
Confidence 55 777778888888888888877555433221 111111223457899999999999999
Q ss_pred HHHHHHHHHhcCCCch----HHHHHHHHHHHc----------CCHHHHHHHHHHHhccCCCCHHHHHHHHHHHhh
Q 002379 863 AVEELSKAIAFKPDLQ----MLHLRAAFYESI----------GDLTSAIRDSQAALCLDPNHMETLDLYNRARDQ 923 (929)
Q Consensus 863 A~~~l~kal~~~p~~~----~~~~la~~~~~~----------g~~~~A~~~~~~al~l~P~~~~a~~~~~~l~~~ 923 (929)
|+..|+++++..|+++ .++.+|.+|..+ |++++|+..|+++++.+|+++.+...+..+...
T Consensus 167 A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~ 241 (261)
T 3qky_A 167 AAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRA 241 (261)
T ss_dssp HHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHH
Confidence 9999999999999853 345779999977 999999999999999999997666655555443
No 92
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.70 E-value=5.3e-17 Score=175.58 Aligned_cols=256 Identities=10% Similarity=0.017 Sum_probs=189.1
Q ss_pred CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcc--------cC-CHhHHHHHHHHHHHhccHHHHHHHHHHHHhhc---
Q 002379 511 DPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVF--------KL-SVDCLELRAWLFIAADDYESALRDTLALLALE--- 578 (929)
Q Consensus 511 ~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~--------~~-~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--- 578 (929)
+|....++..+|.++...|++++|+..|+++++. .+ .+..+..+|.++...|++++|+..+++++...
T Consensus 23 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 102 (311)
T 3nf1_A 23 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKT 102 (311)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 5677789999999999999999999999999974 22 45668899999999999999999999999874
Q ss_pred --CCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhc--------CCCChHHHHHHHH
Q 002379 579 --SNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLIN--------DPGKSFLRFRQSL 648 (929)
Q Consensus 579 --p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~--------~p~~~~~~~~lg~ 648 (929)
++.+. ...++..++.++...|++++|...+ .++++. .|....++..+|.
T Consensus 103 ~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~------------------~~a~~~~~~~~~~~~~~~~~~~~~la~ 161 (311)
T 3nf1_A 103 LGKDHPA---VAATLNNLAVLYGKRGKYKEAEPLC------------------KRALEIREKVLGKDHPDVAKQLNNLAL 161 (311)
T ss_dssp HCTTCHH---HHHHHHHHHHHHHTTTCHHHHHHHH------------------HHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hCCCChH---HHHHHHHHHHHHHHcCcHHHHHHHH------------------HHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 22221 1167788999999999999997766 666655 3566788999999
Q ss_pred HHHHhcCHHHHHHHHHHHHhc--------CCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Q 002379 649 LLLRLNCQKAAMRCLRLARNH--------SSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADT 720 (929)
Q Consensus 649 ~~~~~g~~~~A~~~l~~al~~--------~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~l~~~l~~~ 720 (929)
++...|++++|+..++++++. .|....++..+|.++...|++++|+..++++++..|+.. +...
T Consensus 162 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--------~~~~ 233 (311)
T 3nf1_A 162 LCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHERE--------FGSV 233 (311)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH--------HC--
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc--------CCCC
Confidence 999999999999999999998 777788999999999999999999999999998765430 0000
Q ss_pred CCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHhCCHHH
Q 002379 721 NLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKA 798 (929)
Q Consensus 721 ~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~--~~~a~~~la~~~~~~g~~~~ 798 (929)
...... .......+...+..+...+.+.+|...+.++.... ...++..+|.+|...|++++
T Consensus 234 ~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 296 (311)
T 3nf1_A 234 DDENKP-----------------IWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEA 296 (311)
T ss_dssp ----CC-----------------HHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHH
T ss_pred CcchHH-----------------HHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHH
Confidence 000000 00012334555566667777888888888877663 44688899999999999999
Q ss_pred HHHHHHHHHHHccC
Q 002379 799 AYDEMTKLLEKAQY 812 (929)
Q Consensus 799 A~~~~~~al~~~p~ 812 (929)
|+..+++++++.|+
T Consensus 297 A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 297 AETLEEAAMRSRKQ 310 (311)
T ss_dssp HHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhhc
Confidence 99999999988764
No 93
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.70 E-value=4.5e-16 Score=167.79 Aligned_cols=218 Identities=12% Similarity=0.009 Sum_probs=145.8
Q ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHHHHHhcCCCCCChHHHHHHH
Q 002379 655 CQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLL 734 (929)
Q Consensus 655 ~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~l~~~l~~~~~~~~~~~~a~~~~ 734 (929)
++++|+..|+++ |.+|...|++++|+..|++++.+.+.. + ..
T Consensus 32 ~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~al~~~~~~-------------~-----------~~ 73 (292)
T 1qqe_A 32 KFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKAADYQKKA-------------G-----------NE 73 (292)
T ss_dssp HHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHHHHHHHHT-------------T-----------CH
T ss_pred cHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHh-------------C-----------CH
Confidence 366677666665 455667777777777777777654422 0 00
Q ss_pred HHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC----CC----HHHHHHHHHHHHHh-CCHHHHHHHHHH
Q 002379 735 EEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI----KH----TRAHQGLARVYYLK-NELKAAYDEMTK 805 (929)
Q Consensus 735 e~Al~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~----~~----~~a~~~la~~~~~~-g~~~~A~~~~~~ 805 (929)
. ....++.++|.+|...|++++|+.+|++++++ ++ ..++.++|.+|... |++++|+..|++
T Consensus 74 ~----------~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~ 143 (292)
T 1qqe_A 74 D----------EAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYEL 143 (292)
T ss_dssp H----------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred H----------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence 0 00234667777777777777777777777766 11 24666777777774 777777777777
Q ss_pred HHHHccCC------HHHHHHHh----hhCCHHHHHHHHHHHHhcCCCCcH-------HHHHHHHHHHhcCCHHHHHHHHH
Q 002379 806 LLEKAQYS------ASAFEKRS----EYSDREMAKNDLNMATQLDPLRTY-------PYRYRAAVLMDDQKEVEAVEELS 868 (929)
Q Consensus 806 al~~~p~~------~~~~~~lg----~~g~~~~A~~~~~~al~l~p~~~~-------~~~~la~~~~~~g~~~eA~~~l~ 868 (929)
++++.|+. ..++..+| ..|++++|+..|++++++.|.+.. ++..+|.++..+|++++|+..|+
T Consensus 144 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 223 (292)
T 1qqe_A 144 AGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQ 223 (292)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 77776654 33455555 457777777777777777765443 67899999999999999999999
Q ss_pred HHHhcCCCchHH------HHHHHHHH--HcCCHHHHHHHHHHHhccCCCCHHHHHHHHHH
Q 002379 869 KAIAFKPDLQML------HLRAAFYE--SIGDLTSAIRDSQAALCLDPNHMETLDLYNRA 920 (929)
Q Consensus 869 kal~~~p~~~~~------~~la~~~~--~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~l 920 (929)
++++++|+.... ..++..+. ..+++++|+..|++++.++|.+..++....+.
T Consensus 224 ~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~~~~k~~ 283 (292)
T 1qqe_A 224 EGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILNKIKES 283 (292)
T ss_dssp GGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHHHHHHH
T ss_pred HHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHHHHHHHH
Confidence 999999986532 23455554 35789999999999999999886665555443
No 94
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.69 E-value=9.9e-16 Score=162.03 Aligned_cols=179 Identities=12% Similarity=0.024 Sum_probs=161.3
Q ss_pred HhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccC-C---HhHHHHHHHHHHHhccHHHHHHHHHHHHhhcCCchh
Q 002379 508 SELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-S---VDCLELRAWLFIAADDYESALRDTLALLALESNYMM 583 (929)
Q Consensus 508 l~l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~---~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~ 583 (929)
.+++|.++..++.+|..++..|++++|+..|++++...| + +..++.+|.++...|++++|+..|+++++..|+++.
T Consensus 8 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 87 (261)
T 3qky_A 8 GRLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPR 87 (261)
T ss_dssp ---CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCch
Confidence 457899999999999999999999999999999999988 4 778999999999999999999999999999997752
Q ss_pred hhccccHHHHHHHHHHh--------hcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHH------------
Q 002379 584 FHGRVSGDHLVKLLNHH--------VRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLR------------ 643 (929)
Q Consensus 584 ~~~~~~a~~ll~~~~~~--------~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~~p~~~~~~------------ 643 (929)
. ..++..+|.++.. .|++++|...+ ++++...|+++.+.
T Consensus 88 ~---~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~------------------~~~l~~~p~~~~~~~a~~~~~~~~~~ 146 (261)
T 3qky_A 88 V---PQAEYERAMCYYKLSPPYELDQTDTRKAIEAF------------------QLFIDRYPNHELVDDATQKIRELRAK 146 (261)
T ss_dssp H---HHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHH------------------HHHHHHCTTCTTHHHHHHHHHHHHHH
T ss_pred h---HHHHHHHHHHHHHhcccccccchhHHHHHHHH------------------HHHHHHCcCchhHHHHHHHHHHHHHH
Confidence 1 1678889999998 99999996666 99999999987766
Q ss_pred -----HHHHHHHHHhcCHHHHHHHHHHHHhcCCc---hHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHhhcc
Q 002379 644 -----FRQSLLLLRLNCQKAAMRCLRLARNHSSS---EHERLVYEGWILYDT----------GHREEALSRAEKSISIER 705 (929)
Q Consensus 644 -----~~lg~~~~~~g~~~~A~~~l~~al~~~p~---~~~~~~~lg~~~~~~----------g~~~eA~~~~~~al~~~p 705 (929)
+.+|.+|...|++++|+..|+++++..|+ .+.++..+|.+|... |++++|+..|+++++..|
T Consensus 147 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p 226 (261)
T 3qky_A 147 LARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP 226 (261)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC
Confidence 88899999999999999999999999998 578999999999977 999999999999999999
Q ss_pred ch
Q 002379 706 TF 707 (929)
Q Consensus 706 ~~ 707 (929)
++
T Consensus 227 ~~ 228 (261)
T 3qky_A 227 DS 228 (261)
T ss_dssp TC
T ss_pred CC
Confidence 88
No 95
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.69 E-value=2.2e-15 Score=161.47 Aligned_cols=233 Identities=11% Similarity=0.011 Sum_probs=199.9
Q ss_pred HHhcCH-HHHHHHHHHHHhcCCchHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhccch-HHHHHHHHHHHhcCCCCCC
Q 002379 651 LRLNCQ-KAAMRCLRLARNHSSSEHERLVYEGWILYDTG--HREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPES 726 (929)
Q Consensus 651 ~~~g~~-~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g--~~~eA~~~~~~al~~~p~~-~~~~~l~~~l~~~~~~~~~ 726 (929)
...|.+ ++|+..+.+++.++|++..+|+..+.++...| ++++++..+++++..+|++ .+|...+.++....
T Consensus 43 ~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~----- 117 (306)
T 3dra_A 43 MKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIM----- 117 (306)
T ss_dssp HHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHH-----
T ss_pred HHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHH-----
Confidence 344444 79999999999999999999999999999999 9999999999999999999 66665555542110
Q ss_pred hHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHc---CCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHhCCHH--HH
Q 002379 727 STYVIQLLEEALRCPSDGLRKGQALNNLGSIYVEC---GKLDQAENCYINALDI--KHTRAHQGLARVYYLKNELK--AA 799 (929)
Q Consensus 727 ~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~---g~~~eA~~~~~~al~~--~~~~a~~~la~~~~~~g~~~--~A 799 (929)
... +++++++.+++++++. ++..+|...+.+....|.++ ++
T Consensus 118 --------------------------------~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~E 165 (306)
T 3dra_A 118 --------------------------------ELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKE 165 (306)
T ss_dssp --------------------------------HHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHH
T ss_pred --------------------------------HhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHH
Confidence 233 7889999999999998 56789999999999999988 99
Q ss_pred HHHHHHHHHHccCCHHHHHHHh----hhCC------HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHH-HHHHHH
Q 002379 800 YDEMTKLLEKAQYSASAFEKRS----EYSD------REMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVE-AVEELS 868 (929)
Q Consensus 800 ~~~~~~al~~~p~~~~~~~~lg----~~g~------~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~e-A~~~l~ 868 (929)
++.++++++.+|.|..+|..++ ..+. ++++++.+.+++..+|.+..+|++++.++...|+..+ ..+.+.
T Consensus 166 L~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~ 245 (306)
T 3dra_A 166 LSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSL 245 (306)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHH
Confidence 9999999999999999999988 3455 8999999999999999999999999999999998555 556777
Q ss_pred HHHhcC---CCch-HHHHHHHHHHHcCCHHHHHHHHHHHhc-cCCCCHHHHHHHHHH
Q 002379 869 KAIAFK---PDLQ-MLHLRAAFYESIGDLTSAIRDSQAALC-LDPNHMETLDLYNRA 920 (929)
Q Consensus 869 kal~~~---p~~~-~~~~la~~~~~~g~~~~A~~~~~~al~-l~P~~~~a~~~~~~l 920 (929)
++++++ |.++ .+..++.+|.+.|+.++|++.|+.+.+ .||-....|..+.+.
T Consensus 246 ~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~~~~ 302 (306)
T 3dra_A 246 QFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQISK 302 (306)
T ss_dssp TTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHHT
T ss_pred HHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHHHHhh
Confidence 777765 5554 445789999999999999999999996 899999999887653
No 96
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.69 E-value=5.6e-15 Score=164.99 Aligned_cols=310 Identities=12% Similarity=-0.011 Sum_probs=230.4
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHhcccCC--Hh----HHHHHHHHHHHhccHHHHHHHHHHHHhhcCCchhhhcccc
Q 002379 516 FPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS--VD----CLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVS 589 (929)
Q Consensus 516 ~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~~--~~----~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 589 (929)
.++..+|.++...|++++|+..+++++...+. +. .+..+|.++...|++++|+..+++++.+.|..........
T Consensus 15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 94 (373)
T 1hz4_A 15 EFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALW 94 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 45677888888999999999999998876652 21 4667888889999999999999999988776553333335
Q ss_pred HHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcC--------CCChHHHHHHHHHHHHhcCHHHHHH
Q 002379 590 GDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLIND--------PGKSFLRFRQSLLLLRLNCQKAAMR 661 (929)
Q Consensus 590 a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~~--------p~~~~~~~~lg~~~~~~g~~~~A~~ 661 (929)
++..++.++...|++++|...+ ++++... |....++..+|.++...|++++|..
T Consensus 95 ~~~~la~~~~~~G~~~~A~~~~------------------~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 156 (373)
T 1hz4_A 95 SLIQQSEILFAQGFLQTAWETQ------------------EKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEA 156 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHH------------------HHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHH------------------HHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 5677888899999999996666 6665542 3345677889999999999999999
Q ss_pred HHHHHHhcCCc-----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch--H-HHHHHHHHHHhcCCCCCChHHHHHH
Q 002379 662 CLRLARNHSSS-----EHERLVYEGWILYDTGHREEALSRAEKSISIERTF--E-AFFLKAYILADTNLDPESSTYVIQL 733 (929)
Q Consensus 662 ~l~~al~~~p~-----~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~--~-~~~~l~~~l~~~~~~~~~~~~a~~~ 733 (929)
.+++++...+. ....+..+|.++...|++++|...+++++.+.+.. . .+.
T Consensus 157 ~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~---------------------- 214 (373)
T 1hz4_A 157 SARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWI---------------------- 214 (373)
T ss_dssp HHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHH----------------------
T ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHH----------------------
Confidence 99999988764 34678899999999999999999999998864432 0 000
Q ss_pred HHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCC------HHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 002379 734 LEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIKH------TRAHQGLARVYYLKNELKAAYDEMTKLL 807 (929)
Q Consensus 734 ~e~Al~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~------~~a~~~la~~~~~~g~~~~A~~~~~~al 807 (929)
......++.++...|++++|...+++++...+ ...+..+|.++...|++++|...+++++
T Consensus 215 --------------~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~ 280 (373)
T 1hz4_A 215 --------------SNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELN 280 (373)
T ss_dssp --------------HHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred --------------HHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 01122345667889999999999999988732 2367889999999999999999999998
Q ss_pred HHccCCHHHHHHHhhhCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHH
Q 002379 808 EKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLHLRAAFY 887 (929)
Q Consensus 808 ~~~p~~~~~~~~lg~~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~la~~~ 887 (929)
...+...... ....++..+|.++...|++++|...+++++.+.+..... ..+
T Consensus 281 ~~~~~~~~~~------------------------~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~~g~~----~~~ 332 (373)
T 1hz4_A 281 ENARSLRLMS------------------------DLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFI----SHF 332 (373)
T ss_dssp HHHHHTTCHH------------------------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCC----HHH
T ss_pred HHHHhCcchh------------------------hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccccHH----HHH
Confidence 7754321100 112356678888999999999999999998765432211 112
Q ss_pred HHcCCHHHHHHHHHHHhccCCC
Q 002379 888 ESIGDLTSAIRDSQAALCLDPN 909 (929)
Q Consensus 888 ~~~g~~~~A~~~~~~al~l~P~ 909 (929)
...| +.....+++.+...|-
T Consensus 333 ~~~g--~~~~~ll~~~~~~~~~ 352 (373)
T 1hz4_A 333 VIEG--EAMAQQLRQLIQLNTL 352 (373)
T ss_dssp HTTH--HHHHHHHHHHHHTTCS
T ss_pred HHcc--HHHHHHHHHHHhCCCC
Confidence 2222 5667777888888775
No 97
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.69 E-value=5.6e-16 Score=187.20 Aligned_cols=182 Identities=18% Similarity=0.060 Sum_probs=166.7
Q ss_pred hcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHH--------hcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc
Q 002379 634 INDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLAR--------NHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIER 705 (929)
Q Consensus 634 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al--------~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p 705 (929)
..+|+++.+++..+ ...|++++|+..+++++ +.+|++..++..+|.++...|++++|+..|+++++.+|
T Consensus 388 ~~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p 464 (681)
T 2pzi_A 388 LVDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG 464 (681)
T ss_dssp CCCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc
Confidence 45788888888777 78899999999999999 99999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC--CCHHHH
Q 002379 706 TFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI--KHTRAH 783 (929)
Q Consensus 706 ~~~~~~~l~~~l~~~~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~--~~~~a~ 783 (929)
++ ..+++++|.++...|++++|+..|++++++ +++.++
T Consensus 465 ~~----------------------------------------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 504 (681)
T 2pzi_A 465 WR----------------------------------------WRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPK 504 (681)
T ss_dssp CC----------------------------------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHH
T ss_pred ch----------------------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHH
Confidence 88 566889999999999999999999999999 567899
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHh----hhCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCC
Q 002379 784 QGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS----EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQK 859 (929)
Q Consensus 784 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg----~~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~ 859 (929)
+++|.++...|++++ +..|+++++.+|++..+|..+| ..|++++|+..|+++++++|.+..++.++|.++...++
T Consensus 505 ~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 505 LALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 999999999999999 9999999999999999999999 67999999999999999999999999999999987666
No 98
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.68 E-value=6.2e-16 Score=157.70 Aligned_cols=177 Identities=14% Similarity=0.020 Sum_probs=151.9
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHcCC--CHHHHHH----------------HHHHHHHhCCHHHHHHHHHHHHHH
Q 002379 748 GQALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQG----------------LARVYYLKNELKAAYDEMTKLLEK 809 (929)
Q Consensus 748 ~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~--~~~a~~~----------------la~~~~~~g~~~~A~~~~~~al~~ 809 (929)
...+...|..+...|++++|+..|+++++.+ ++.+++. +|.++...|++++|+..|+++++.
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 83 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK 83 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3457889999999999999999999999985 4567888 999999999999999999999999
Q ss_pred ccCCHHHHHHHh----hhCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcC--CHHHHHHHHHHHHhcCCCchHHHHH
Q 002379 810 AQYSASAFEKRS----EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQ--KEVEAVEELSKAIAFKPDLQMLHLR 883 (929)
Q Consensus 810 ~p~~~~~~~~lg----~~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g--~~~eA~~~l~kal~~~p~~~~~~~l 883 (929)
+|++..++..+| ..|++++|+..|+++++++|+++.+++.+|.+|...| +...+...+++++...|....++.+
T Consensus 84 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 163 (208)
T 3urz_A 84 APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRD 163 (208)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHHHH
Confidence 999999999999 6799999999999999999999999999999998766 4566788888876544444456678
Q ss_pred HHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHhhhh
Q 002379 884 AAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNRARDQAS 925 (929)
Q Consensus 884 a~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~l~~~~~ 925 (929)
|.++...|++++|+..|+++++++|+ .++...+.++..+..
T Consensus 164 g~~~~~~~~~~~A~~~~~~al~l~P~-~~~~~~l~~i~~~~~ 204 (208)
T 3urz_A 164 GLSKLFTTRYEKARNSLQKVILRFPS-TEAQKTLDKILRIEK 204 (208)
T ss_dssp HHHHHHHHTHHHHHHHHHHHTTTSCC-HHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHH
Confidence 99999999999999999999999997 456666777765543
No 99
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.68 E-value=5.8e-15 Score=165.43 Aligned_cols=239 Identities=11% Similarity=0.029 Sum_probs=187.9
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHhcccC-------CHhHHHHHHHHHHHhccHHHHHHHHHHHHhhcCCchh-hhccc
Q 002379 517 PYKYRAVAKMEEGQIRAAISEIDRIIVFKL-------SVDCLELRAWLFIAADDYESALRDTLALLALESNYMM-FHGRV 588 (929)
Q Consensus 517 a~~~~a~~~~~~g~~~~A~~~~~~al~~~~-------~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~~ 588 (929)
.++.+|..+...|++++|+..|++++.+.. .+..+..+|.++...|++++|+..+++++++.+.... .....
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 182 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTI 182 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHH
Confidence 577899999999999999999999997643 3446889999999999999999999999998776542 22333
Q ss_pred cHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCC------CChHHHHHHHHHHHHhcCHHHHHHH
Q 002379 589 SGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDP------GKSFLRFRQSLLLLRLNCQKAAMRC 662 (929)
Q Consensus 589 ~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~~p------~~~~~~~~lg~~~~~~g~~~~A~~~ 662 (929)
.++..+|.++...|++++|..++ .++++..+ ..+.++.++|.+|..+|++++|+..
T Consensus 183 ~~~~~lg~~y~~~~~~~~A~~~~------------------~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~ 244 (378)
T 3q15_A 183 QSLFVIAGNYDDFKHYDKALPHL------------------EAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEH 244 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHH------------------HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHH------------------HHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 67888999999999999997666 66666422 2346788999999999999999999
Q ss_pred HHHHHh-----cCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch--HHHHHHHHHHHhcCCCCCChHHHHHHHH
Q 002379 663 LRLARN-----HSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF--EAFFLKAYILADTNLDPESSTYVIQLLE 735 (929)
Q Consensus 663 l~~al~-----~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~--~~~~~l~~~l~~~~~~~~~~~~a~~~~e 735 (929)
++++++ .+|..+.++..+|.++...|++++|+..+++++++.+.. ..+
T Consensus 245 ~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~------------------------- 299 (378)
T 3q15_A 245 FQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFY------------------------- 299 (378)
T ss_dssp HHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCH-------------------------
T ss_pred HHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHH-------------------------
Confidence 999999 788889999999999999999999999999999986543 000
Q ss_pred HHhhchhccCchhHHHHHHHHHHHHcCC---HHHHHHHHHHHHcC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc
Q 002379 736 EALRCPSDGLRKGQALNNLGSIYVECGK---LDQAENCYINALDI-KHTRAHQGLARVYYLKNELKAAYDEMTKLLEKA 810 (929)
Q Consensus 736 ~Al~~~~~al~~~~a~~~lg~~~~~~g~---~~eA~~~~~~al~~-~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~ 810 (929)
...+..++.++...++ +.+|+..+++.-.. .....+..+|.+|...|++++|...|+++++..
T Consensus 300 ------------~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 300 ------------KELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp ------------HHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ------------HHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 1124455666666666 66777776663221 223466778888888888888888888887653
No 100
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.67 E-value=6.3e-16 Score=186.81 Aligned_cols=182 Identities=13% Similarity=0.005 Sum_probs=166.7
Q ss_pred hcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHh--------cccC-CHhHHHHHHHHHHHhccHHHHHHHHHHHHhhcC
Q 002379 509 ELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRII--------VFKL-SVDCLELRAWLFIAADDYESALRDTLALLALES 579 (929)
Q Consensus 509 ~l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al--------~~~~-~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p 579 (929)
..+|+++.+++..| ...|++++|+..|++++ +.+| +++.+..+|.++...|++++|+..|+++++.+|
T Consensus 388 ~~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p 464 (681)
T 2pzi_A 388 LVDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG 464 (681)
T ss_dssp CCCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc
Confidence 56899998888877 78899999999999999 7777 778899999999999999999999999999999
Q ss_pred CchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHH
Q 002379 580 NYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAA 659 (929)
Q Consensus 580 ~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A 659 (929)
++. .++..+|.++...|++++|...+ +++++.+|+++.+++.+|.++..+|++++
T Consensus 465 ~~~------~a~~~lg~~~~~~g~~~~A~~~~------------------~~al~l~P~~~~~~~~lg~~~~~~g~~~~- 519 (681)
T 2pzi_A 465 WRW------RLVWYRAVAELLTGDYDSATKHF------------------TEVLDTFPGELAPKLALAATAELAGNTDE- 519 (681)
T ss_dssp CCH------HHHHHHHHHHHHHTCHHHHHHHH------------------HHHHHHSTTCSHHHHHHHHHHHHHTCCCT-
T ss_pred chH------HHHHHHHHHHHHcCCHHHHHHHH------------------HHHHHhCCCChHHHHHHHHHHHHcCChHH-
Confidence 999 88889999999999999995555 99999999999999999999999999999
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch-HHHHHHHHHHH
Q 002379 660 MRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILA 718 (929)
Q Consensus 660 ~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~~~~~l~~~l~ 718 (929)
+..|+++++.+|+++.+++++|.++...|++++|+..|+++++++|++ .++.+++.++.
T Consensus 520 ~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~ 579 (681)
T 2pzi_A 520 HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLL 579 (681)
T ss_dssp TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998 66666666653
No 101
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.67 E-value=7.5e-17 Score=177.95 Aligned_cols=279 Identities=10% Similarity=0.003 Sum_probs=96.4
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccCCHhHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Q 002379 499 EKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLALE 578 (929)
Q Consensus 499 ~Ai~~~~kal~l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~ 578 (929)
+|.+.+++. +.+.+|..+|.++.+.|++++|+..|.++ +++..+...+..+...|++++|+..++.+++..
T Consensus 21 ~A~~fae~~-----~~~~vWs~La~A~l~~g~~~eAIdsfika----~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~ 91 (449)
T 1b89_A 21 RAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA 91 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHhC-----CChHHHHHHHHHHHHcCCHHHHHHHHHcC----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC
Confidence 666666665 33468999999999999999999999775 356678888888888999999999888888754
Q ss_pred CCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHH
Q 002379 579 SNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKA 658 (929)
Q Consensus 579 p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~ 658 (929)
++ + .....++.+|...|++.++..++ . .| +..+|..+|..+...|++++
T Consensus 92 ~~-~------~i~~~Li~~Y~Klg~l~e~e~f~----------------------~-~p-n~~a~~~IGd~~~~~g~yee 140 (449)
T 1b89_A 92 RE-S------YVETELIFALAKTNRLAELEEFI----------------------N-GP-NNAHIQQVGDRCYDEKMYDA 140 (449)
T ss_dssp ------------------------CHHHHTTTT----------------------T-CC-----------------CTTT
T ss_pred cc-c------hhHHHHHHHHHHhCCHHHHHHHH----------------------c-CC-cHHHHHHHHHHHHHcCCHHH
Confidence 33 3 33444667777788887774444 1 23 33588999999999999999
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHHHHHhcCCCCCChHHHHHHHHHHh
Q 002379 659 AMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEAL 738 (929)
Q Consensus 659 A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~l~~~l~~~~~~~~~~~~a~~~~e~Al 738 (929)
|..+|.++ ..|..+|.++.++|++++|++.++++. +| ..|.....+....+ .++.|.
T Consensus 141 A~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA~--~~--~~Wk~v~~aCv~~~-----------ef~lA~ 197 (449)
T 1b89_A 141 AKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKAN--ST--RTWKEVCFACVDGK-----------EFRLAQ 197 (449)
T ss_dssp HHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHHT--CH--HHHHHHHHHHHHTT-----------CHHHHH
T ss_pred HHHHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHHcC--Cc--hhHHHHHHHHHHcC-----------cHHHHH
Confidence 99999876 467889999999999999999999882 22 44444444444444 444444
Q ss_pred hchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHH
Q 002379 739 RCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI--KHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASA 816 (929)
Q Consensus 739 ~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~--~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 816 (929)
.+.......++-...+...|...|++++|+.++++++.+ .+...+..+|.+|.+-
T Consensus 198 ~~~l~L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky----------------------- 254 (449)
T 1b89_A 198 MCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF----------------------- 254 (449)
T ss_dssp HTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTT-----------------------
T ss_pred HHHHHHHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhc-----------------------
Confidence 444333222222233444445555555555555555444 2334444444444321
Q ss_pred HHHHhhhCCHHHHHHHHHHHHhcCC-----CCcHHHHHHHHHHHhcCCHHHHHHHHH
Q 002379 817 FEKRSEYSDREMAKNDLNMATQLDP-----LRTYPYRYRAAVLMDDQKEVEAVEELS 868 (929)
Q Consensus 817 ~~~lg~~g~~~~A~~~~~~al~l~p-----~~~~~~~~la~~~~~~g~~~eA~~~l~ 868 (929)
..++..+.++.|...+.+.| ..+..|..+..+|...++|+.|+...-
T Consensus 255 -----~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~ 306 (449)
T 1b89_A 255 -----KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMM 306 (449)
T ss_dssp -----CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHH
T ss_pred -----CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHH
Confidence 12333444444444444444 455555566666666666665555433
No 102
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.66 E-value=1.4e-14 Score=161.75 Aligned_cols=270 Identities=15% Similarity=0.051 Sum_probs=203.3
Q ss_pred cHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChH-----HHHHHHHHHHHhcCHHHHHHHH
Q 002379 589 SGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSF-----LRFRQSLLLLRLNCQKAAMRCL 663 (929)
Q Consensus 589 ~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~~p~~~~-----~~~~lg~~~~~~g~~~~A~~~l 663 (929)
.+....+.++...|++++|..++ ++++...|.... ++..+|.++...|++++|+..+
T Consensus 15 ~~~~~~a~~~~~~g~~~~A~~~~------------------~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 76 (373)
T 1hz4_A 15 EFNALRAQVAINDGNPDEAERLA------------------KLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALM 76 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHH------------------HHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHH------------------HHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 44556677777778888775555 777776665432 5677888888888888888888
Q ss_pred HHHHhcCCch------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHHHHHhcCCCCCChHHHHHHHHHH
Q 002379 664 RLARNHSSSE------HERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEA 737 (929)
Q Consensus 664 ~~al~~~p~~------~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~l~~~l~~~~~~~~~~~~a~~~~e~A 737 (929)
++++...|.. ..++..+|.++...|++++|+..+++++++.+.. + .+..
T Consensus 77 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~-------------~-~~~~----------- 131 (373)
T 1hz4_A 77 QQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQ-------------H-LEQL----------- 131 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-------------T-CTTS-----------
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh-------------c-cccC-----------
Confidence 8888765433 2346778888888888888888888888765432 0 0000
Q ss_pred hhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc
Q 002379 738 LRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIKH-------TRAHQGLARVYYLKNELKAAYDEMTKLLEKA 810 (929)
Q Consensus 738 l~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~-------~~a~~~la~~~~~~g~~~~A~~~~~~al~~~ 810 (929)
.....++.++|.++...|++++|...+++++.+.+ ..++..+|.++...|++++|...+++++...
T Consensus 132 -------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~ 204 (373)
T 1hz4_A 132 -------PMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLL 204 (373)
T ss_dssp -------THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred -------cHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 00134578899999999999999999999998721 3578899999999999999999999999875
Q ss_pred cC--C-HHHHH----HHh----hhCCHHHHHHHHHHHHhcCCCC----cHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 002379 811 QY--S-ASAFE----KRS----EYSDREMAKNDLNMATQLDPLR----TYPYRYRAAVLMDDQKEVEAVEELSKAIAFKP 875 (929)
Q Consensus 811 p~--~-~~~~~----~lg----~~g~~~~A~~~~~~al~l~p~~----~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p 875 (929)
+. . ..... .++ ..|++++|...+++++...|.. ...+..+|.++...|++++|+..+++++...+
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~ 284 (373)
T 1hz4_A 205 GNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENAR 284 (373)
T ss_dssp TTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 43 2 11111 122 5799999999999999887753 23567899999999999999999999987654
Q ss_pred Cc------h-HHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Q 002379 876 DL------Q-MLHLRAAFYESIGDLTSAIRDSQAALCLDP 908 (929)
Q Consensus 876 ~~------~-~~~~la~~~~~~g~~~~A~~~~~~al~l~P 908 (929)
.. . ....+|.++...|++++|...+++++.+.+
T Consensus 285 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~ 324 (373)
T 1hz4_A 285 SLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN 324 (373)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred hCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc
Confidence 31 1 233669999999999999999999998754
No 103
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.66 E-value=9.2e-15 Score=156.64 Aligned_cols=181 Identities=8% Similarity=-0.055 Sum_probs=155.8
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHhC--CHHHHHHHHHHHhcccC-CHhHHHHHHHHH----HHh---ccHHHHH
Q 002379 499 EKIVDLNYASELDPTLSFPYKYRAVAKMEEG--QIRAAISEIDRIIVFKL-SVDCLELRAWLF----IAA---DDYESAL 568 (929)
Q Consensus 499 ~Ai~~~~kal~l~P~~~~a~~~~a~~~~~~g--~~~~A~~~~~~al~~~~-~~~~~~~~a~~~----~~~---g~~~~A~ 568 (929)
+|+..++++|.++|++..+|..++.++...+ ++++++..+++++..+| +..++..++++. ... +++++++
T Consensus 51 ~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL 130 (306)
T 3dra_A 51 RALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREF 130 (306)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHH
T ss_pred HHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHH
Confidence 8999999999999999999999999999999 99999999999999998 788899999998 666 7899999
Q ss_pred HHHHHHHhhcCCchhhhccccHHHHHHHHHHhhcccc--hHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHH
Q 002379 569 RDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWS--PADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQ 646 (929)
Q Consensus 569 ~~~~~al~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~--~A~~~l~l~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~l 646 (929)
..+.++++.+|.+. .++...+.+....+.++ ++. +.+.++++.+|.+..+|..+
T Consensus 131 ~~~~~~l~~~pkny------~aW~~R~~vl~~l~~~~~~~EL------------------~~~~~~i~~d~~N~sAW~~R 186 (306)
T 3dra_A 131 DILEAMLSSDPKNH------HVWSYRKWLVDTFDLHNDAKEL------------------SFVDKVIDTDLKNNSAWSHR 186 (306)
T ss_dssp HHHHHHHHHCTTCH------HHHHHHHHHHHHTTCTTCHHHH------------------HHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHhCCCCH------HHHHHHHHHHHHhcccChHHHH------------------HHHHHHHHhCCCCHHHHHHH
Confidence 99999999999999 77777888888888877 664 44489999999999999999
Q ss_pred HHHHHHhcC------HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHH-HHHHHHHHhh
Q 002379 647 SLLLLRLNC------QKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEA-LSRAEKSISI 703 (929)
Q Consensus 647 g~~~~~~g~------~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA-~~~~~~al~~ 703 (929)
+.++...+. ++++++.+++++..+|++..+|++++.++...|+..++ ...+++++.+
T Consensus 187 ~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~ 250 (306)
T 3dra_A 187 FFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDL 250 (306)
T ss_dssp HHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEG
T ss_pred HHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhc
Confidence 999888887 88888888888888888888888888888888875443 3455555544
No 104
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.64 E-value=2.9e-15 Score=161.47 Aligned_cols=209 Identities=10% Similarity=0.012 Sum_probs=144.2
Q ss_pred HHHHHHhCCHHHHHHHHHHHhcccC-------CHhHHHHHHHHHHHhccHHHHHHHHHHHHhhcCCchhhhccccHHHHH
Q 002379 522 AVAKMEEGQIRAAISEIDRIIVFKL-------SVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLV 594 (929)
Q Consensus 522 a~~~~~~g~~~~A~~~~~~al~~~~-------~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~ll 594 (929)
|.++...|++++|+..|++++.+.+ .+..+..+|.++..+|++++|+..|++++++.|...
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g------------ 111 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRG------------ 111 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcC------------
Confidence 4556667777777777777766532 133466677777777777777777777776554332
Q ss_pred HHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHHHHh-cCHHHHHHHHHHHHhcCCch
Q 002379 595 KLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRL-NCQKAAMRCLRLARNHSSSE 673 (929)
Q Consensus 595 ~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~lg~~~~~~-g~~~~A~~~l~~al~~~p~~ 673 (929)
++.. .+.++..+|.+|... |++++|+.+|++++++.|..
T Consensus 112 --------~~~~--------------------------------~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~ 151 (292)
T 1qqe_A 112 --------QFRR--------------------------------GANFKFELGEILENDLHDYAKAIDCYELAGEWYAQD 151 (292)
T ss_dssp --------CHHH--------------------------------HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred --------CHHH--------------------------------HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhC
Confidence 1111 134678999999996 99999999999999988754
Q ss_pred ------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch-HHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCc
Q 002379 674 ------HERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLR 746 (929)
Q Consensus 674 ------~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~~~~~l~~~l~~~~~~~~~~~~a~~~~e~Al~~~~~al~ 746 (929)
..++..+|.++..+|++++|+..|++++++.|+. ...+ .
T Consensus 152 ~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~----------------------------------~ 197 (292)
T 1qqe_A 152 QSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQW----------------------------------S 197 (292)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGG----------------------------------G
T ss_pred CChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccH----------------------------------H
Confidence 5678999999999999999999999999998876 1000 0
Q ss_pred hhHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCHH-------HHHHHHHHHH--HhCCHHHHHHHHHHHHHHccCCHHH
Q 002379 747 KGQALNNLGSIYVECGKLDQAENCYINALDIKHTR-------AHQGLARVYY--LKNELKAAYDEMTKLLEKAQYSASA 816 (929)
Q Consensus 747 ~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~~~-------a~~~la~~~~--~~g~~~~A~~~~~~al~~~p~~~~~ 816 (929)
...++.++|.++...|++++|+.+|++++++.+.. .+..++..+. ..+++++|+..|++++..+|.+..+
T Consensus 198 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~ 276 (292)
T 1qqe_A 198 LKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITI 276 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHH
Confidence 02357889999999999999999999999984431 2333444443 2344555555555555555444333
No 105
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.64 E-value=7.9e-15 Score=151.44 Aligned_cols=209 Identities=13% Similarity=0.051 Sum_probs=154.7
Q ss_pred ChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCch---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch-HHHHHHH
Q 002379 639 KSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE---HERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKA 714 (929)
Q Consensus 639 ~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~---~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~~~~~l~ 714 (929)
.+..++.+|..+...|++++|+..|+++++..|.+ ..+++.+|.++...|++++|+..|+++++.+|++ .
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~------ 76 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN------ 76 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT------
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCc------
Confidence 45678999999999999999999999999998876 4789999999999999999999999999999987 1
Q ss_pred HHHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Q 002379 715 YILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIKHTRAHQGLARVYYLKN 794 (929)
Q Consensus 715 ~~l~~~~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~~~a~~~la~~~~~~g 794 (929)
...+++.+|.++...|.. . ...+..++..+...|
T Consensus 77 --------------------------------~~~a~~~~g~~~~~~~~~-----~---------~~~~~~~~~~~~~~~ 110 (225)
T 2yhc_A 77 --------------------------------IDYVMYMRGLTNMALDDS-----A---------LQGFFGVDRSDRDPQ 110 (225)
T ss_dssp --------------------------------HHHHHHHHHHHHHHHHC----------------------------CCH
T ss_pred --------------------------------HHHHHHHHHHHHHhhhhh-----h---------hhhhhccchhhcCcH
Confidence 012345555555544321 0 112334566666677
Q ss_pred CHHHHHHHHHHHHHHccCCHHHHHHHhhhCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 002379 795 ELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFK 874 (929)
Q Consensus 795 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~ 874 (929)
++++|+..|+++++..|++..++..+...+.... ........+|.+|...|++++|+..|+++++..
T Consensus 111 ~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~-------------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~ 177 (225)
T 2yhc_A 111 QARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKD-------------RLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDY 177 (225)
T ss_dssp HHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHC
Confidence 8888888888888888887665433321111111 112244678999999999999999999999999
Q ss_pred CCch----HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHH
Q 002379 875 PDLQ----MLHLRAAFYESIGDLTSAIRDSQAALCLDPNHME 912 (929)
Q Consensus 875 p~~~----~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~ 912 (929)
|+++ .++.+|.+|..+|++++|++.++++....|++.+
T Consensus 178 p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 178 PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 9875 3457899999999999999999999999998754
No 106
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.63 E-value=1e-14 Score=144.05 Aligned_cols=169 Identities=15% Similarity=0.152 Sum_probs=158.7
Q ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHhcccC-CHhHHHHHHHHHHHhccHHHHHHHHHHHHhhcCCchhhhccccHHHH
Q 002379 515 SFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHL 593 (929)
Q Consensus 515 ~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~l 593 (929)
...+..+|.++...|++++|+..+++++...| ++..+..+|.++...|++++|+..++++++..|++. .++..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~ 81 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNV------KVATV 81 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH------HHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH------HHHHH
Confidence 56788899999999999999999999998887 788899999999999999999999999999999988 77788
Q ss_pred HHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCch
Q 002379 594 VKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE 673 (929)
Q Consensus 594 l~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~ 673 (929)
++.++...|++++|...+ .+++..+|.++.++..+|.++...|++++|+..++++++..|.+
T Consensus 82 ~a~~~~~~~~~~~A~~~~------------------~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~ 143 (186)
T 3as5_A 82 LGLTYVQVQKYDLAVPLL------------------IKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNE 143 (186)
T ss_dssp HHHHHHHHTCHHHHHHHH------------------HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHhcCHHHHHHHH------------------HHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccc
Confidence 999999999999996666 89999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch
Q 002379 674 HERLVYEGWILYDTGHREEALSRAEKSISIERTF 707 (929)
Q Consensus 674 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~ 707 (929)
+.++..+|.++...|++++|+..++++++..|++
T Consensus 144 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 177 (186)
T 3as5_A 144 GKVHRAIAFSYEQMGRHEEALPHFKKANELDEGA 177 (186)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 9999999999999999999999999999999876
No 107
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.63 E-value=5.3e-15 Score=150.75 Aligned_cols=170 Identities=14% Similarity=-0.006 Sum_probs=140.4
Q ss_pred ChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccC-CHhHHHH----------------HHHHHHHhccHHHHHHHHHHHHh
Q 002379 514 LSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLEL----------------RAWLFIAADDYESALRDTLALLA 576 (929)
Q Consensus 514 ~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~----------------~a~~~~~~g~~~~A~~~~~~al~ 576 (929)
.+..++.+|..+...|++++|+..|++++...| ++..++. +|.++...|++++|+..|+++++
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 455677788888888888888888888887777 5666777 89999999999999999999999
Q ss_pred hcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHHHHhcC-
Q 002379 577 LESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNC- 655 (929)
Q Consensus 577 ~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~lg~~~~~~g~- 655 (929)
++|++. .++..+|.++...|++++|...+ +++++.+|+++.+++.+|.+|...|+
T Consensus 83 ~~p~~~------~~~~~lg~~~~~~g~~~~A~~~~------------------~~al~~~P~~~~a~~~lg~~~~~~~~~ 138 (208)
T 3urz_A 83 KAPNNV------DCLEACAEMQVCRGQEKDALRMY------------------EKILQLEADNLAANIFLGNYYYLTAEQ 138 (208)
T ss_dssp HCTTCH------HHHHHHHHHHHHHTCHHHHHHHH------------------HHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HCCCCH------HHHHHHHHHHHHcCCHHHHHHHH------------------HHHHHcCCCCHHHHHHHHHHHHHHhHH
Confidence 999998 78888999999999999995555 99999999999999999999987764
Q ss_pred -HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchH
Q 002379 656 -QKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFE 708 (929)
Q Consensus 656 -~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~ 708 (929)
...+...+++++...|. ..+++.+|.++...|++++|+..|+++++++|+.+
T Consensus 139 ~~~~~~~~~~~~~~~~~~-~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~ 191 (208)
T 3urz_A 139 EKKKLETDYKKLSSPTKM-QYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTE 191 (208)
T ss_dssp HHHHHHHHHC---CCCHH-HHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHH
T ss_pred HHHHHHHHHHHHhCCCch-hHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHH
Confidence 45667778777654433 34678889999999999999999999999999873
No 108
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.62 E-value=1.2e-14 Score=143.56 Aligned_cols=166 Identities=16% Similarity=0.120 Sum_probs=155.3
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHh----
Q 002379 748 GQALNNLGSIYVECGKLDQAENCYINALDI--KHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS---- 821 (929)
Q Consensus 748 ~~a~~~lg~~~~~~g~~~eA~~~~~~al~~--~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg---- 821 (929)
...+..+|.++...|++++|+..|+++++. ....++..+|.++...|++++|+..++++++..|++..++..+|
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 466889999999999999999999999988 56789999999999999999999999999999999999998888
Q ss_pred hhCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHH-HHHHHHHHcCCHHHHHHHH
Q 002379 822 EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLH-LRAAFYESIGDLTSAIRDS 900 (929)
Q Consensus 822 ~~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~-~la~~~~~~g~~~~A~~~~ 900 (929)
..|++++|+..++++++.+|.++.++..+|.++...|++++|+..++++++..|++...+ .+|.++...|++++|+..+
T Consensus 88 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 167 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHF 167 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 579999999999999999999999999999999999999999999999999999886555 7799999999999999999
Q ss_pred HHHhccCCCCHHH
Q 002379 901 QAALCLDPNHMET 913 (929)
Q Consensus 901 ~~al~l~P~~~~a 913 (929)
+++++++|++...
T Consensus 168 ~~~~~~~~~~~~~ 180 (186)
T 3as5_A 168 KKANELDEGASVE 180 (186)
T ss_dssp HHHHHHHHCCCGG
T ss_pred HHHHHcCCCchhh
Confidence 9999999987654
No 109
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.62 E-value=5e-16 Score=149.37 Aligned_cols=143 Identities=14% Similarity=0.099 Sum_probs=103.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHhhhCCHHHHH
Q 002379 753 NLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAK 830 (929)
Q Consensus 753 ~lg~~~~~~g~~~eA~~~~~~al~~~--~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~g~~~~A~ 830 (929)
.||.++...|++++|+..+++++... .+.+++.+|.+|...|++++|+..|+++++.
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--------------------- 60 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--------------------- 60 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------------
T ss_pred HhHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------------------
Confidence 35666666777777777777776662 3345666777777777766666666665555
Q ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHH-HHHHHHHHcCCHHHHHHH-HHHHhccCC
Q 002379 831 NDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLH-LRAAFYESIGDLTSAIRD-SQAALCLDP 908 (929)
Q Consensus 831 ~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~-~la~~~~~~g~~~~A~~~-~~~al~l~P 908 (929)
+|+++.+|..+|.++...|++++|+..|+++++++|+++..+ .+|.+|...|++++|... ++++++++|
T Consensus 61 ---------~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P 131 (150)
T 4ga2_A 61 ---------QERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFP 131 (150)
T ss_dssp ---------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHST
T ss_pred ---------CCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCc
Confidence 555666677788888888999999999999998888887555 678888888888776665 588899999
Q ss_pred CCHHHHHHHHHHHhhhh
Q 002379 909 NHMETLDLYNRARDQAS 925 (929)
Q Consensus 909 ~~~~a~~~~~~l~~~~~ 925 (929)
+++.++.+++++....+
T Consensus 132 ~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 132 GSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp TCHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 99888888888765543
No 110
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.62 E-value=6.7e-15 Score=156.28 Aligned_cols=217 Identities=18% Similarity=0.125 Sum_probs=148.9
Q ss_pred CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchH
Q 002379 637 PGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNH--------SSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFE 708 (929)
Q Consensus 637 p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~--------~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~ 708 (929)
|..+.++..+|.++...|++++|+..++++++. .|....++..+|.++...|++++|+..|++++.+....
T Consensus 40 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~- 118 (283)
T 3edt_B 40 PDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKV- 118 (283)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH-
Confidence 667889999999999999999999999999977 46678899999999999999999999999999863211
Q ss_pred HHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC--------CC-
Q 002379 709 AFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI--------KH- 779 (929)
Q Consensus 709 ~~~~l~~~l~~~~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~--------~~- 779 (929)
.+ +.. .....++.++|.++...|++++|+.+|++++++ .+
T Consensus 119 -----------~~--~~~------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 167 (283)
T 3edt_B 119 -----------LG--KFH------------------PDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPN 167 (283)
T ss_dssp -----------HC--TTC------------------HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHH
T ss_pred -----------cC--CCC------------------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHH
Confidence 00 000 001356899999999999999999999999987 22
Q ss_pred -HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHhhhCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcC
Q 002379 780 -TRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQ 858 (929)
Q Consensus 780 -~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g 858 (929)
..++..+|.++...|++++|+..++++++..+.... ....+.....+..++..+...+
T Consensus 168 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~ 226 (283)
T 3edt_B 168 VAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEF---------------------GSVNGDNKPIWMHAEEREESKD 226 (283)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHS---------------------SSCCSSCCCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC---------------------CCcchhHHHHHHHHHHHHhcCC
Confidence 258899999999999999999999999987543210 0122333444444444444332
Q ss_pred C------HHHHHHHHHHHHhcCCCchH-HHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 002379 859 K------EVEAVEELSKAIAFKPDLQM-LHLRAAFYESIGDLTSAIRDSQAALCL 906 (929)
Q Consensus 859 ~------~~eA~~~l~kal~~~p~~~~-~~~la~~~~~~g~~~~A~~~~~~al~l 906 (929)
. +.++...++......|.... +..+|.+|..+|++++|+..|++++++
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 227 KRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp CCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred chhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 2 33333333333222233322 225566666666666666666666654
No 111
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.61 E-value=7.5e-16 Score=170.01 Aligned_cols=291 Identities=13% Similarity=0.024 Sum_probs=141.1
Q ss_pred HHHHhCCHHHHHHHHHHHhcccCCHhHHHHHHHHHHHhccHHHHHHHHHHHHhhcCCchhhhccccHHHHHHHHHHhhcc
Q 002379 524 AKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRS 603 (929)
Q Consensus 524 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~ll~~~~~~~~~ 603 (929)
.....|+.++|...+++. +.|+.|..+|.++...|++++|++.|.++ +++ .++..++......|.
T Consensus 12 ll~~~~~ld~A~~fae~~----~~~~vWs~La~A~l~~g~~~eAIdsfika-----~D~------~~y~~V~~~ae~~g~ 76 (449)
T 1b89_A 12 LIEHIGNLDRAYEFAERC----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDP------SSYMEVVQAANTSGN 76 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHccCHHHHHHHHHhC----CChHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCH------HHHHHHHHHHHhCCC
Confidence 345778899999999998 35678999999999999999999999764 333 344556667777889
Q ss_pred cchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHH
Q 002379 604 WSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWI 683 (929)
Q Consensus 604 ~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~ 683 (929)
+++|+.++ +.+.+. ..++.+...++.+|.++|++.++.+.++. |+ ..+|..+|..
T Consensus 77 ~EeAi~yl------------------~~ark~-~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~-----pn-~~a~~~IGd~ 131 (449)
T 1b89_A 77 WEELVKYL------------------QMARKK-ARESYVETELIFALAKTNRLAELEEFING-----PN-NAHIQQVGDR 131 (449)
T ss_dssp ---------------------------------------------------CHHHHTTTTTC-----C------------
T ss_pred HHHHHHHH------------------HHHHHh-CccchhHHHHHHHHHHhCCHHHHHHHHcC-----Cc-HHHHHHHHHH
Confidence 99886666 555553 33367778888999999999998877752 43 4589999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhccchHHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCC
Q 002379 684 LYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGK 763 (929)
Q Consensus 684 ~~~~g~~~eA~~~~~~al~~~p~~~~~~~l~~~l~~~~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~ 763 (929)
+...|+|++|..+|.++ ++ |..+|.++..+|+
T Consensus 132 ~~~~g~yeeA~~~Y~~a-----~n-------------------------------------------~~~LA~~L~~Lg~ 163 (449)
T 1b89_A 132 CYDEKMYDAAKLLYNNV-----SN-------------------------------------------FGRLASTLVHLGE 163 (449)
T ss_dssp -----CTTTHHHHHHHT-----TC-------------------------------------------HHHHHHHHHTTTC
T ss_pred HHHcCCHHHHHHHHHHh-----hh-------------------------------------------HHHHHHHHHHhcc
Confidence 99999999999999876 22 8889999999999
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHH-HHHhhhCCHHHHHHHHHHHHhcCCC
Q 002379 764 LDQAENCYINALDIKHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAF-EKRSEYSDREMAKNDLNMATQLDPL 842 (929)
Q Consensus 764 ~~eA~~~~~~al~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~-~~lg~~g~~~~A~~~~~~al~l~p~ 842 (929)
+++|++.|+++ +++.+|.....++...|+++.|......+ ..+|+..... ......|.+++|+..+++++.+++.
T Consensus 164 yq~AVea~~KA---~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~a 239 (449)
T 1b89_A 164 YQAAVDGARKA---NSTRTWKEVCFACVDGKEFRLAQMCGLHI-VVHADELEELINYYQDRGYFEELITMLEAALGLERA 239 (449)
T ss_dssp HHHHHHHHHHH---TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTC
T ss_pred HHHHHHHHHHc---CCchhHHHHHHHHHHcCcHHHHHHHHHHH-HhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHH
Confidence 99999999999 57889999999999999999997776653 3555543321 1122678999999999999999999
Q ss_pred CcHHHHHHHHHHHhc--CCHHHHHHHHHHHHhcCC-----Cc-hHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 002379 843 RTYPYRYRAAVLMDD--QKEVEAVEELSKAIAFKP-----DL-QMLHLRAAFYESIGDLTSAIRDSQAALCL 906 (929)
Q Consensus 843 ~~~~~~~la~~~~~~--g~~~eA~~~l~kal~~~p-----~~-~~~~~la~~~~~~g~~~~A~~~~~~al~l 906 (929)
....+..+|.+|.+- ++..++++.|...+.+.| .. ..|..+..+|.+.++++.|+...-.....
T Consensus 240 h~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~~~ 311 (449)
T 1b89_A 240 HMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTD 311 (449)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhCChh
Confidence 999999999888754 477788888877666655 33 34557789999999999999877666544
No 112
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.59 E-value=3.7e-12 Score=151.28 Aligned_cols=391 Identities=11% Similarity=-0.009 Sum_probs=241.3
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCC---HHHHHHHHHHHhccc---CCHhHHHHHHHHHHHhccH-------
Q 002379 498 REKIVDLNYASELDPTLSFPYKYRAVAKMEEGQ---IRAAISEIDRIIVFK---LSVDCLELRAWLFIAADDY------- 564 (929)
Q Consensus 498 ~~Ai~~~~kal~l~P~~~~a~~~~a~~~~~~g~---~~~A~~~~~~al~~~---~~~~~~~~~a~~~~~~g~~------- 564 (929)
+.+...|++++...|.....|...+......++ ++.+...|++++... ++++.|..........++.
T Consensus 83 ~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~ 162 (679)
T 4e6h_A 83 KQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEA 162 (679)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchh
Confidence 367889999999999999999999999888898 999999999999988 7888777666555444432
Q ss_pred -HHHHHHHHHHHhh----cCCchhhhccccHHHHHHHHH---------HhhcccchHHHHHHhhhccccccccccHHHHH
Q 002379 565 -ESALRDTLALLAL----ESNYMMFHGRVSGDHLVKLLN---------HHVRSWSPADCWIKLYDRWSSVDDIGSLAVIN 630 (929)
Q Consensus 565 -~~A~~~~~~al~~----~p~~~~~~~~~~a~~ll~~~~---------~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~ 630 (929)
+.....|++++.. +++.. ..+....... ...+..+.+.. .|.
T Consensus 163 r~~vr~~FErAl~~vG~~d~~s~------~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~------------------iy~ 218 (679)
T 4e6h_A 163 RNIVIQAFQVVVDKCAIFEPKSI------QFWNEYLHFLEHWKPVNKFEEQQRVQYIRK------------------LYK 218 (679)
T ss_dssp HHHHHHHHHHHHHHTTTTCSSCH------HHHHHHHHHHHTCCCCSHHHHHHHHHHHHH------------------HHH
T ss_pred HHHHHHHHHHHHHHhCcccccch------HHHHHHHHHHHhccccCcHHHHhHHHHHHH------------------HHH
Confidence 3445788888864 44333 1111111100 01112222222 223
Q ss_pred HHHhcCCCC-h-HHHHHH-------------HHHHHHhcCHHHHHHHHHHHH------hc-CCc----------------
Q 002379 631 QMLINDPGK-S-FLRFRQ-------------SLLLLRLNCQKAAMRCLRLAR------NH-SSS---------------- 672 (929)
Q Consensus 631 ~al~~~p~~-~-~~~~~l-------------g~~~~~~g~~~~A~~~l~~al------~~-~p~---------------- 672 (929)
+++.. |.. . ..|... ..+-....+|..|...+...- .. .|.
T Consensus 219 raL~i-P~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~ 297 (679)
T 4e6h_A 219 TLLCQ-PMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEY 297 (679)
T ss_dssp HHTTS-CCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCC
T ss_pred HHHhC-ccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchh
Confidence 33321 111 0 011000 000111123333333333211 00 010
Q ss_pred -h--HHHHHHHHHHHHHcC-------CHHHHHHHHHHHHhhccch-HHHHHHHHHHHhcCCCCCChHHHH-HHHHHHhhc
Q 002379 673 -E--HERLVYEGWILYDTG-------HREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVI-QLLEEALRC 740 (929)
Q Consensus 673 -~--~~~~~~lg~~~~~~g-------~~~eA~~~~~~al~~~p~~-~~~~~l~~~l~~~~~~~~~~~~a~-~~~e~Al~~ 740 (929)
. ...|..........+ ..+.....|++++...|.+ +.|+..+..+...+. ...+. ..|++|+..
T Consensus 298 ~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~----~~~a~r~il~rAi~~ 373 (679)
T 4e6h_A 298 DVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNT----DSTVITKYLKLGQQC 373 (679)
T ss_dssp CHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSC----CTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCc----HHHHHHHHHHHHHHh
Confidence 0 122222222111111 0223445566666666666 666666655554431 11222 344444431
Q ss_pred hhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC-----------CC-------------HHHHHHHHHHHHHhCCH
Q 002379 741 PSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI-----------KH-------------TRAHQGLARVYYLKNEL 796 (929)
Q Consensus 741 ~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~-----------~~-------------~~a~~~la~~~~~~g~~ 796 (929)
.. .....|...+......|++++|...|++++.. .+ ..+|...+....+.|+.
T Consensus 374 ~P---~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l 450 (679)
T 4e6h_A 374 IP---NSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGL 450 (679)
T ss_dssp CT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred CC---CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCH
Confidence 11 11345677777888888888888888888864 11 24688888888888999
Q ss_pred HHHHHHHHHHHHH-ccCCHHHHHHHh----h-hCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 002379 797 KAAYDEMTKLLEK-AQYSASAFEKRS----E-YSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKA 870 (929)
Q Consensus 797 ~~A~~~~~~al~~-~p~~~~~~~~lg----~-~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~ka 870 (929)
+.|...|.++++. .+....+|...+ . .++.+.|...|+.+++..|.++..|...+......|+.+.|...|+++
T Consensus 451 ~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lfera 530 (679)
T 4e6h_A 451 AASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESS 530 (679)
T ss_dssp HHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 9999999999987 444455666555 2 245899999999999999999999999999999999999999999999
Q ss_pred HhcCCC---chHHH-HHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHH
Q 002379 871 IAFKPD---LQMLH-LRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNRA 920 (929)
Q Consensus 871 l~~~p~---~~~~~-~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~l 920 (929)
+...|+ ...++ ....+....|+.+.+...++++.+..|+++.+.....|.
T Consensus 531 l~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~~~~f~~ry 584 (679)
T 4e6h_A 531 IDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNKLEEFTNKY 584 (679)
T ss_dssp TTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCHHHHHHHHT
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHh
Confidence 998884 33334 447777788999999999999999999987766555443
No 113
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.59 E-value=4e-15 Score=142.98 Aligned_cols=144 Identities=10% Similarity=0.039 Sum_probs=99.9
Q ss_pred HHHHHHHhccHHHHHHHHHHHHhhcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHH
Q 002379 554 RAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQML 633 (929)
Q Consensus 554 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al 633 (929)
+|.++...|++++|+..+++++..+|+++ .....+|.+|...|++++|+..+ ++++
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~------~~~~~la~~y~~~~~~~~A~~~~------------------~~al 58 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKS------IKGFYFAKLYYEAKEYDLAKKYI------------------CTYI 58 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHH------TTHHHHHHHHHHTTCHHHHHHHH------------------HHHH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccH------HHHHHHHHHHHHcCCHHHHHHHH------------------HHHH
Confidence 45555666667777777777666666666 45556666777777777664444 6777
Q ss_pred hcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHH-HHHHHhhccch-HHHH
Q 002379 634 INDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSR-AEKSISIERTF-EAFF 711 (929)
Q Consensus 634 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~-~~~al~~~p~~-~~~~ 711 (929)
+.+|+++.+|+.+|.+|...|++++|+..|+++++++|+++.++..+|.++...|++++|... ++++++++|++ .++.
T Consensus 59 ~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~ 138 (150)
T 4ga2_A 59 NVQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYK 138 (150)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHH
Confidence 777777777777888888888888888888888888888888888888888888877766654 47788888877 6666
Q ss_pred HHHHHHHhcC
Q 002379 712 LKAYILADTN 721 (929)
Q Consensus 712 ~l~~~l~~~~ 721 (929)
.++..+...|
T Consensus 139 l~~~ll~~~G 148 (150)
T 4ga2_A 139 LKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHTCC
T ss_pred HHHHHHHHhC
Confidence 6666665544
No 114
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.59 E-value=2.1e-14 Score=152.47 Aligned_cols=219 Identities=17% Similarity=0.091 Sum_probs=151.8
Q ss_pred hcCHHHHHHHHHHHHhc--------CCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHHHHHhcCCCC
Q 002379 653 LNCQKAAMRCLRLARNH--------SSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDP 724 (929)
Q Consensus 653 ~g~~~~A~~~l~~al~~--------~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~l~~~l~~~~~~~ 724 (929)
.|++++|+..|+++++. .|..+.++..+|.++...|++++|+..+++++++.... .+ .
T Consensus 14 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~------------~~--~ 79 (283)
T 3edt_B 14 LVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKT------------LG--K 79 (283)
T ss_dssp CSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH------------TC--T
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHH------------cC--C
Confidence 46666677777766652 36678899999999999999999999999999864110 00 0
Q ss_pred CChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC------C-C---HHHHHHHHHHHHHhC
Q 002379 725 ESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI------K-H---TRAHQGLARVYYLKN 794 (929)
Q Consensus 725 ~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~------~-~---~~a~~~la~~~~~~g 794 (929)
.. .....++.++|.++...|++++|+.+|++++.+ . + ..++.++|.++...|
T Consensus 80 ~~------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g 141 (283)
T 3edt_B 80 DH------------------PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQG 141 (283)
T ss_dssp TC------------------HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTT
T ss_pred cc------------------hHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcC
Confidence 00 001356899999999999999999999999987 1 2 258899999999999
Q ss_pred CHHHHHHHHHHHHHHccCCHHHHHHHhhhCCHHHHHHHHHHHH-hcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 002379 795 ELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMAT-QLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAF 873 (929)
Q Consensus 795 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~g~~~~A~~~~~~al-~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~ 873 (929)
++++|+..++++++... +.. .-.|....++..+|.++...|++++|+..++++++.
T Consensus 142 ~~~~A~~~~~~al~~~~-----------------------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 142 KAEEVEYYYRRALEIYA-----------------------TRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp CHHHHHHHHHHHHHHHH-----------------------HHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH-----------------------HhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999887621 000 012334567889999999999999999999999986
Q ss_pred ---------CCCchHHH-HHHHHHHHcC------CHHHHHHHHHHHhccCCCCHHHHHHHHHHHhhhhh
Q 002379 874 ---------KPDLQMLH-LRAAFYESIG------DLTSAIRDSQAALCLDPNHMETLDLYNRARDQASH 926 (929)
Q Consensus 874 ---------~p~~~~~~-~la~~~~~~g------~~~~A~~~~~~al~l~P~~~~a~~~~~~l~~~~~~ 926 (929)
.+.....+ ..+..+...+ .+.++...++.+....|....++..++.+.....+
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 267 (283)
T 3edt_B 199 AHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGK 267 (283)
T ss_dssp HHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCC
Confidence 33333333 4455555433 35556666666666667777777777777655443
No 115
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.58 E-value=8.5e-14 Score=143.64 Aligned_cols=173 Identities=10% Similarity=-0.011 Sum_probs=145.2
Q ss_pred ChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccCC----HhHHHHHHHHHHHhccHHHHHHHHHHHHhhcCCchhhhcccc
Q 002379 514 LSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS----VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVS 589 (929)
Q Consensus 514 ~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~~----~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 589 (929)
.+..++.+|..++..|++++|+..|++++...|. +..++.+|.++...|++++|+..|+++++.+|++... ..
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~---~~ 79 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI---DY 79 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTH---HH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcH---HH
Confidence 4567888999999999999999999999987772 3578889999999999999999999999999988721 02
Q ss_pred HHHHHHHHHHh------------------hcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHH--------
Q 002379 590 GDHLVKLLNHH------------------VRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLR-------- 643 (929)
Q Consensus 590 a~~ll~~~~~~------------------~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~~p~~~~~~-------- 643 (929)
++..+|.++.. .|++++| +..++++++..|+++.++
T Consensus 80 a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A------------------~~~~~~~l~~~P~~~~a~~a~~~l~~ 141 (225)
T 2yhc_A 80 VMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAA------------------FSDFSKLVRGYPNSQYTTDATKRLVF 141 (225)
T ss_dssp HHHHHHHHHHHHHC--------------CCHHHHHH------------------HHHHHHHHTTCTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHH------------------HHHHHHHHHHCcCChhHHHHHHHHHH
Confidence 56667777654 3455666 455599999999987655
Q ss_pred ---------HHHHHHHHHhcCHHHHHHHHHHHHhcCCchH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch
Q 002379 644 ---------FRQSLLLLRLNCQKAAMRCLRLARNHSSSEH---ERLVYEGWILYDTGHREEALSRAEKSISIERTF 707 (929)
Q Consensus 644 ---------~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~---~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~ 707 (929)
+.+|.+|...|++++|+..|+++++..|+++ .++..+|.++.++|++++|+..++++....|+.
T Consensus 142 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 142 LKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred HHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence 5789999999999999999999999999875 789999999999999999999999999888876
No 116
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.57 E-value=4e-13 Score=144.61 Aligned_cols=227 Identities=9% Similarity=-0.022 Sum_probs=189.3
Q ss_pred HHhcCHH-HHHHHHHHHHhcCCchHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhhccchHHHHHHHHHHHh
Q 002379 651 LRLNCQK-AAMRCLRLARNHSSSEHERLVYEGWILYDTGH----------REEALSRAEKSISIERTFEAFFLKAYILAD 719 (929)
Q Consensus 651 ~~~g~~~-~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~----------~~eA~~~~~~al~~~p~~~~~~~l~~~l~~ 719 (929)
...|++. +|+..+.+++..+|++..+|+..+.++...|. +++++..++.++..+|.+
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKn------------ 107 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKS------------ 107 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTC------------
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCC------------
Confidence 3456654 79999999999999999999999999988776 688999999999999988
Q ss_pred cCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcC--CHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHhCC
Q 002379 720 TNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECG--KLDQAENCYINALDI--KHTRAHQGLARVYYLKNE 795 (929)
Q Consensus 720 ~~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~g--~~~eA~~~~~~al~~--~~~~a~~~la~~~~~~g~ 795 (929)
..+|+..+.++...+ .+++++.++.++++. .+..+|...+.+....|.
T Consensus 108 ----------------------------y~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~ 159 (331)
T 3dss_A 108 ----------------------------YGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAV 159 (331)
T ss_dssp ----------------------------HHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred ----------------------------HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCc
Confidence 445666666666666 489999999999998 567899999999999998
Q ss_pred -HHHHHHHHHHHHHHccCCHHHHHHHh----hh--------------CCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHh
Q 002379 796 -LKAAYDEMTKLLEKAQYSASAFEKRS----EY--------------SDREMAKNDLNMATQLDPLRTYPYRYRAAVLMD 856 (929)
Q Consensus 796 -~~~A~~~~~~al~~~p~~~~~~~~lg----~~--------------g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~ 856 (929)
++++++.+.++++.+|.+..+|..++ .. +.++++++++.+++..+|.+..+|+++..++..
T Consensus 160 ~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~ 239 (331)
T 3dss_A 160 APAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGA 239 (331)
T ss_dssp CHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 69999999999999999999999888 23 347899999999999999999999877777766
Q ss_pred c-----------CCHHHHHHHHHHHHhcCCCchHHHHHHHHHH-----HcCCHHHHHHHHHHHhccCCCCHHHHHHHH
Q 002379 857 D-----------QKEVEAVEELSKAIAFKPDLQMLHLRAAFYE-----SIGDLTSAIRDSQAALCLDPNHMETLDLYN 918 (929)
Q Consensus 857 ~-----------g~~~eA~~~l~kal~~~p~~~~~~~la~~~~-----~~g~~~~A~~~~~~al~l~P~~~~a~~~~~ 918 (929)
. +.++++++.+++++++.|++. +.+++.+.. ..|..++....+.+..++||-...-|.-+.
T Consensus 240 ~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~-w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~ 316 (331)
T 3dss_A 240 GSGRCELSVEKSTVLQSELESCKELQELEPENK-WCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLR 316 (331)
T ss_dssp SSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCH-HHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred ccCccccchHHHHHHHHHHHHHHHHHhhCcccc-hHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHH
Confidence 5 468999999999999999983 333333222 358899999999999999999887765543
No 117
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.56 E-value=1.7e-11 Score=145.67 Aligned_cols=400 Identities=8% Similarity=-0.061 Sum_probs=273.5
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccC-CHhHHHHHHHHHHHhcc---HHHHHHHHHHH
Q 002379 499 EKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADD---YESALRDTLAL 574 (929)
Q Consensus 499 ~Ai~~~~kal~l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~~g~---~~~A~~~~~~a 574 (929)
+.+..|++++..+|.+...|..+.......++++.+...|++++...| ....|...+......++ ++.+...|+++
T Consensus 50 d~i~~lE~~l~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRa 129 (679)
T 4e6h_A 50 DVIGKLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARC 129 (679)
T ss_dssp CHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHH
Confidence 678899999999999999999999999999999999999999999888 77778888888888888 99999999999
Q ss_pred HhhcC---CchhhhccccHHHHHHHHHHhhccc----chHHHHHHhhhccccccccccHHHHHHHHh---c-CCCChHHH
Q 002379 575 LALES---NYMMFHGRVSGDHLVKLLNHHVRSW----SPADCWIKLYDRWSSVDDIGSLAVINQMLI---N-DPGKSFLR 643 (929)
Q Consensus 575 l~~~p---~~~~~~~~~~a~~ll~~~~~~~~~~----~~A~~~l~l~~~~~~~~~~~~l~~~~~al~---~-~p~~~~~~ 643 (929)
+...| ....|.. .+..+. ..+.. +.+...+ ...|++++. . ++....+|
T Consensus 130 l~~~~~~~sv~LW~~------Yl~f~~-~~~~~~~~~~~~r~~v--------------r~~FErAl~~vG~~d~~s~~iW 188 (679)
T 4e6h_A 130 LSKELGNNDLSLWLS------YITYVR-KKNDIITGGEEARNIV--------------IQAFQVVVDKCAIFEPKSIQFW 188 (679)
T ss_dssp TCSSSCCCCHHHHHH------HHHHHH-HHSCSTTTHHHHHHHH--------------HHHHHHHHHHTTTTCSSCHHHH
T ss_pred HHhcCCCCCHHHHHH------HHHHHH-HhcccccccchhHHHH--------------HHHHHHHHHHhCcccccchHHH
Confidence 99984 3222211 011111 11111 1122212 345566665 3 67677777
Q ss_pred HHHHHHHH---------HhcCHHHHHHHHHHHHhcCCch-HHHHHHHHHHH-------------HHcCCHHHHHHHHHHH
Q 002379 644 FRQSLLLL---------RLNCQKAAMRCLRLARNHSSSE-HERLVYEGWIL-------------YDTGHREEALSRAEKS 700 (929)
Q Consensus 644 ~~lg~~~~---------~~g~~~~A~~~l~~al~~~p~~-~~~~~~lg~~~-------------~~~g~~~eA~~~~~~a 700 (929)
........ .+++.+.+...|++++...... ...|......- ....+|+.|...+...
T Consensus 189 ~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~ 268 (679)
T 4e6h_A 189 NEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDW 268 (679)
T ss_dssp HHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHH
Confidence 66665543 3456788999999999753222 22222111111 1112344444444331
Q ss_pred ------Hhh-c------------c-----ch---HHHHHHHHHHHhcCCCCCCh------HHHHHHHHHHhhchhccCch
Q 002379 701 ------ISI-E------------R-----TF---EAFFLKAYILADTNLDPESS------TYVIQLLEEALRCPSDGLRK 747 (929)
Q Consensus 701 ------l~~-~------------p-----~~---~~~~~l~~~l~~~~~~~~~~------~~a~~~~e~Al~~~~~al~~ 747 (929)
+.. . | .. ..|...... ... ++... ......|++|+..+. ..
T Consensus 269 ~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~f-Ek~--~~~~l~~~~~~~Rv~~~Ye~aL~~~p---~~ 342 (679)
T 4e6h_A 269 LNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRW-ESD--NKLELSDDLHKARMTYVYMQAAQHVC---FA 342 (679)
T ss_dssp HHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHH-HHT--CTTCCCHHHHHHHHHHHHHHHHHHTT---TC
T ss_pred HHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHH-HHh--CCccccchhhHHHHHHHHHHHHHHcC---CC
Confidence 110 0 1 00 122222111 111 11111 111233444444211 13
Q ss_pred hHHHHHHHHHHHHcCCHHHHH-HHHHHHHcC--CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc-----------cC-
Q 002379 748 GQALNNLGSIYVECGKLDQAE-NCYINALDI--KHTRAHQGLARVYYLKNELKAAYDEMTKLLEKA-----------QY- 812 (929)
Q Consensus 748 ~~a~~~lg~~~~~~g~~~eA~-~~~~~al~~--~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~-----------p~- 812 (929)
...|...+..+...|+.++|. ..|++|+.. .....|..++......|++++|.+.|++++... |.
T Consensus 343 ~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~ 422 (679)
T 4e6h_A 343 PEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTN 422 (679)
T ss_dssp HHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcc
Confidence 588999999999999999997 999999987 345678899999999999999999999999753 32
Q ss_pred ----------CHHHHHHHh----hhCCHHHHHHHHHHHHhc-CCCCcHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCC
Q 002379 813 ----------SASAFEKRS----EYSDREMAKNDLNMATQL-DPLRTYPYRYRAAVLMDDQ-KEVEAVEELSKAIAFKPD 876 (929)
Q Consensus 813 ----------~~~~~~~lg----~~g~~~~A~~~~~~al~l-~p~~~~~~~~la~~~~~~g-~~~eA~~~l~kal~~~p~ 876 (929)
...+|...+ ..|+.+.|...|.+|++. .+.....|...|.+....+ +++.|.+.|+++++..|+
T Consensus 423 ~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~ 502 (679)
T 4e6h_A 423 ESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFAT 502 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTT
T ss_pred hhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCC
Confidence 233455554 468899999999999988 5556778888887777765 499999999999999999
Q ss_pred chHHH-HHHHHHHHcCCHHHHHHHHHHHhccCC---CCHHHHHHHHHHHhhhh
Q 002379 877 LQMLH-LRAAFYESIGDLTSAIRDSQAALCLDP---NHMETLDLYNRARDQAS 925 (929)
Q Consensus 877 ~~~~~-~la~~~~~~g~~~~A~~~~~~al~l~P---~~~~a~~~~~~l~~~~~ 925 (929)
++.++ ..+.+....|+.+.|...|++++...| +....|..+.+.+...+
T Consensus 503 ~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G 555 (679)
T 4e6h_A 503 DGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVG 555 (679)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTC
T ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcC
Confidence 98776 458888889999999999999999988 46677777777665543
No 118
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.55 E-value=4.4e-14 Score=139.61 Aligned_cols=167 Identities=14% Similarity=0.042 Sum_probs=140.1
Q ss_pred CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccC-CHhHHHHHHHHHHHhccHHHHHHHHHHHHhhcCCchhhhcccc
Q 002379 511 DPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVS 589 (929)
Q Consensus 511 ~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 589 (929)
+|.....++.+|..+...|++++|+..|+++++.+| ++..+..+|.++...|++++|+..+++++..+| ++ .
T Consensus 2 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~------~ 74 (176)
T 2r5s_A 2 NASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DN------S 74 (176)
T ss_dssp ----CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CH------H
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-Ch------H
Confidence 456667789999999999999999999999999888 788899999999999999999999999999999 66 2
Q ss_pred HHHHHHHHHH-hhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 002379 590 GDHLVKLLNH-HVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARN 668 (929)
Q Consensus 590 a~~ll~~~~~-~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~ 668 (929)
.....+.+.. ..+....| +..++++++.+|+++.+++.+|.++...|++++|+..|+++++
T Consensus 75 ~~~~~~~~~~~~~~~~~~a------------------~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 136 (176)
T 2r5s_A 75 YKSLIAKLELHQQAAESPE------------------LKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILK 136 (176)
T ss_dssp HHHHHHHHHHHHHHTSCHH------------------HHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhcccchH------------------HHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 2222332221 11222233 4555999999999999999999999999999999999999999
Q ss_pred cCCch--HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002379 669 HSSSE--HERLVYEGWILYDTGHREEALSRAEKSIS 702 (929)
Q Consensus 669 ~~p~~--~~~~~~lg~~~~~~g~~~eA~~~~~~al~ 702 (929)
.+|+. +.++..+|.++...|+.++|+..|++++.
T Consensus 137 ~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 137 VNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp TCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred hCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 99976 66999999999999999999999999875
No 119
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.55 E-value=2.6e-12 Score=138.23 Aligned_cols=242 Identities=11% Similarity=0.011 Sum_probs=190.0
Q ss_pred HhcccHH-HHHHHHHHHHhcCccccHHHHHHHHHHhchHHHHHHHHHhhhccCCCchhhhHHHHHHhhhhHHHHHHHHHH
Q 002379 430 FEREEYK-DACYYFEAAADAGHIYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNLGREKIVDLNYAS 508 (929)
Q Consensus 430 ~~~g~y~-~A~~~f~~al~~~~~~~~a~la~~~~~~g~a~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Ai~~~~kal 508 (929)
.+.|+|+ +|+..+++++.++|.+.. ++..++.....+..- . .+. ......++++..+++++
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~nP~~yt-----aWn~Rr~iL~~l~~~---~---~~~-------~~~~~l~~EL~~~~~~L 101 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGANPDFAT-----LWNCRREVLQHLETE---K---SPE-------ESAALVKAELGFLESCL 101 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTCTTCHH-----HHHHHHHHHHHHHHH---S---CHH-------HHHHHHHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHH-----HHHHHHHHHHHhccc---c---cch-------hhhHHHHHHHHHHHHHH
Confidence 4567776 799999999999999887 555555555444311 0 000 01112458999999999
Q ss_pred hcCCCChHHHHHHHHHHHHhC--CHHHHHHHHHHHhcccC-CHhHHHHHHHHHHHhcc-HHHHHHHHHHHHhhcCCchhh
Q 002379 509 ELDPTLSFPYKYRAVAKMEEG--QIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADD-YESALRDTLALLALESNYMMF 584 (929)
Q Consensus 509 ~l~P~~~~a~~~~a~~~~~~g--~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~~g~-~~~A~~~~~~al~~~p~~~~~ 584 (929)
..+|++..+|..++.++...+ .+++++..++++++.+| +..++..++++....|. +++++..+.++++.+|.|.
T Consensus 102 ~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~-- 179 (331)
T 3dss_A 102 RVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNY-- 179 (331)
T ss_dssp HHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCH--
T ss_pred HhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCH--
Confidence 999999999999999999999 49999999999999999 88899999999999998 6999999999999999999
Q ss_pred hccccHHHHHHHHHHhh--------------cccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHH
Q 002379 585 HGRVSGDHLVKLLNHHV--------------RSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLL 650 (929)
Q Consensus 585 ~~~~~a~~ll~~~~~~~--------------~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~lg~~~ 650 (929)
.+++.++.+.... +.++++ ++.+.+++..+|++..+|+.+..++
T Consensus 180 ----SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eE------------------le~~~~ai~~~P~d~SaW~Y~r~ll 237 (331)
T 3dss_A 180 ----SSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKE------------------LELVQNAFFTDPNDQSAWFYHRWLL 237 (331)
T ss_dssp ----HHHHHHHHHHHHHSCCC------CCCHHHHHHH------------------HHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHhhhccccccccccchHHHHHH------------------HHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 6777777777655 234444 5566999999999999998666665
Q ss_pred HHh-----------cCHHHHHHHHHHHHhcCCchHHHHHHHHHHHH---HcCCHHHHHHHHHHHHhhccch-HHHHHH
Q 002379 651 LRL-----------NCQKAAMRCLRLARNHSSSEHERLVYEGWILY---DTGHREEALSRAEKSISIERTF-EAFFLK 713 (929)
Q Consensus 651 ~~~-----------g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~---~~g~~~eA~~~~~~al~~~p~~-~~~~~l 713 (929)
... +.++++++.++++++..|++...+..++.+.. ..|..++....+.+.++++|.. .-|..+
T Consensus 238 ~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~ 315 (331)
T 3dss_A 238 GAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL 315 (331)
T ss_dssp HSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred HhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHH
Confidence 554 56899999999999999998554444433322 3688899999999999999987 444333
No 120
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.54 E-value=3e-14 Score=132.37 Aligned_cols=113 Identities=20% Similarity=0.174 Sum_probs=94.8
Q ss_pred HHccCCHHHHHHHh----hhCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHH-H
Q 002379 808 EKAQYSASAFEKRS----EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLH-L 882 (929)
Q Consensus 808 ~~~p~~~~~~~~lg----~~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~-~ 882 (929)
.++|+.+..+..+| ..|++++|+..|+++++++|.++.+|.++|.++..+|++++|+..|+++++++|++...+ .
T Consensus 7 ~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~ 86 (126)
T 4gco_A 7 YINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIR 86 (126)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 34555555666665 456666666667777777788888899999999999999999999999999999987655 7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHH
Q 002379 883 RAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNRA 920 (929)
Q Consensus 883 la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~l 920 (929)
+|.+|..+|++++|+..|+++++++|++++++..++++
T Consensus 87 lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 87 KAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 79999999999999999999999999999999888765
No 121
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.54 E-value=3.7e-13 Score=145.39 Aligned_cols=241 Identities=10% Similarity=-0.060 Sum_probs=193.6
Q ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhccchHHHHHHHHHHH
Q 002379 640 SFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTG-HREEALSRAEKSISIERTFEAFFLKAYILA 718 (929)
Q Consensus 640 ~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g-~~~eA~~~~~~al~~~p~~~~~~~l~~~l~ 718 (929)
..++..+..+....+..++|+..+++++.++|++..+|+..+.++...| .+++++..+++++..+|++
T Consensus 54 ~~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKn----------- 122 (349)
T 3q7a_A 54 KDAMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKS----------- 122 (349)
T ss_dssp HHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCC-----------
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCc-----------
Confidence 3455555566666677789999999999999999999999999999999 5999999999999999988
Q ss_pred hcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHc-C-CHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHhC
Q 002379 719 DTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVEC-G-KLDQAENCYINALDI--KHTRAHQGLARVYYLKN 794 (929)
Q Consensus 719 ~~~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~-g-~~~eA~~~~~~al~~--~~~~a~~~la~~~~~~g 794 (929)
..+|+..+.++... + +++++++.++++++. ++..+|...+.+....|
T Consensus 123 -----------------------------y~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~ 173 (349)
T 3q7a_A 123 -----------------------------YQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFS 173 (349)
T ss_dssp -----------------------------HHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHH
T ss_pred -----------------------------HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Confidence 34466666666665 6 788999999999998 56689999999998888
Q ss_pred CHH--------HHHHHHHHHHHHccCCHHHHHHHh----hhCC-------HHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Q 002379 795 ELK--------AAYDEMTKLLEKAQYSASAFEKRS----EYSD-------REMAKNDLNMATQLDPLRTYPYRYRAAVLM 855 (929)
Q Consensus 795 ~~~--------~A~~~~~~al~~~p~~~~~~~~lg----~~g~-------~~~A~~~~~~al~l~p~~~~~~~~la~~~~ 855 (929)
.++ ++++.++++++.+|.|..+|..++ ..+. ++++++.+.+++..+|.+..+|+++..++.
T Consensus 174 ~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~ 253 (349)
T 3q7a_A 174 TLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLK 253 (349)
T ss_dssp HTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred cccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 877 999999999999999999999998 3444 689999999999999999999999998988
Q ss_pred hcCCH--------------------HHHHHHHHHHHhcC------CCch-HHHHHHHHHHHcCCHHHHHHHHHHHh-ccC
Q 002379 856 DDQKE--------------------VEAVEELSKAIAFK------PDLQ-MLHLRAAFYESIGDLTSAIRDSQAAL-CLD 907 (929)
Q Consensus 856 ~~g~~--------------------~eA~~~l~kal~~~------p~~~-~~~~la~~~~~~g~~~~A~~~~~~al-~l~ 907 (929)
..|+. .+-.+.....+... +..+ .+..++.+|...|+.++|++.|+... +.|
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~d 333 (349)
T 3q7a_A 254 HFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYD 333 (349)
T ss_dssp HTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred hcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhC
Confidence 87764 22222222222221 1222 34478999999999999999999987 789
Q ss_pred CCCHHHHHHHHHH
Q 002379 908 PNHMETLDLYNRA 920 (929)
Q Consensus 908 P~~~~a~~~~~~l 920 (929)
|-....|..+.+.
T Consensus 334 pir~~yw~~~~~~ 346 (349)
T 3q7a_A 334 QMRAGYWEFRRRE 346 (349)
T ss_dssp GGGHHHHHHHHHH
T ss_pred hHHHHHHHHHHHh
Confidence 9988888777653
No 122
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=99.53 E-value=1.5e-14 Score=139.00 Aligned_cols=115 Identities=15% Similarity=0.143 Sum_probs=96.0
Q ss_pred EEEEE-cCeEEEeehhHHhccCHHHHHHhcC-CCC-cCCCCeeEecCCCCCHHHHHHHhhhHccCC--------------
Q 002379 220 VTFCV-RDKEISFVRNKIASLSSPFKAMLYG-GFV-ESKRKTIDFSHDGVSVEGLRAVEVYTRTSR-------------- 282 (929)
Q Consensus 220 v~~~v-~~~~~~~hr~iLaa~S~~F~~mf~~-~~~-e~~~~~i~~~~~~~~~~~~~~~l~~~Yt~~-------------- 282 (929)
|+++. +|+.|.+||.+ |++|+||++||.+ ++. |+....|.| ++|+..+++.|++|+|++.
T Consensus 3 v~L~ssDg~~f~v~~~v-A~~S~~i~~m~~~~~~~~e~~~~~Ipl--~~V~~~iL~kViey~~~h~~~~~~~~~~~~~~~ 79 (159)
T 2ast_A 3 IKLQSSDGEIFEVDVEI-AKQSVTIKTMLEDLGMDDEGDDDPVPL--PNVNAAILKKVIQWCTHHKDDPPPPEDDENKEK 79 (159)
T ss_dssp EEEECTTSCEEEEEHHH-HHTCHHHHHHTTSSCSS------CEEC--TTSCHHHHHHHHHHHHHTTTCCC----------
T ss_pred EEEEcCCCCEEEeCHHH-HHHhHHHHHHHHhcCCcccccCCCcCC--CCccHHHHHHHHHHHHHcCcCCCCccccccccc
Confidence 67765 89999999999 9999999999998 888 888889999 9999999999999999998
Q ss_pred ------------CCCCChhHHHHHHHHhchhChHhHHHHHHHHHHhhcC--ChhhHHHHHHHHHHhChHH
Q 002379 283 ------------VDLFCPGIVLELLSFANRFCCEEMKSACDAHLASLVG--DIEDALILIDYGLEERATL 338 (929)
Q Consensus 283 ------------~~~~~~~~~~~ll~~A~~~~~~~l~~~C~~~l~~~~~--~~~n~~~~~~~a~~~~~~~ 338 (929)
+. ++.+++++|+.+||.+++..|.+.|++++.+.+. |++.+..++.+...+...+
T Consensus 80 ~~~~i~~wD~~F~~-id~~~l~eLl~AAnyL~I~~Lld~~c~~va~~i~gkt~eeir~~f~I~~d~t~eE 148 (159)
T 2ast_A 80 RTDDIPVWDQEFLK-VDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEE 148 (159)
T ss_dssp -CCCCCHHHHHHTC-SCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHSSCCHHHHHHHTTCCCCSCTTH
T ss_pred chhhhhHHHHHHHc-CCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHHHHHHcCCCCCCCHHH
Confidence 66 8999999999999999999999999999999997 4666666655554444433
No 123
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.52 E-value=3e-13 Score=145.19 Aligned_cols=168 Identities=14% Similarity=0.027 Sum_probs=153.4
Q ss_pred CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccC-CHhHHHHHHHHHHHhccHHHHHHHHHHHHhhcCCchhhhcccc
Q 002379 511 DPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVS 589 (929)
Q Consensus 511 ~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 589 (929)
.|.+...++.+|..+...|++++|+..|++++..+| ++..+..+|.++...|++++|+..+++++..+|+.. .
T Consensus 113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~------~ 186 (287)
T 3qou_A 113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTR------Y 186 (287)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHH------H
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchH------H
Confidence 489999999999999999999999999999999999 888999999999999999999999999999999665 3
Q ss_pred HHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 002379 590 GDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNH 669 (929)
Q Consensus 590 a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~ 669 (929)
.....+..+...+..+.|... +++++..+|+++.+++.+|.++...|++++|+..|+++++.
T Consensus 187 ~~~~~~~~l~~~~~~~~a~~~------------------l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~ 248 (287)
T 3qou_A 187 QGLVAQIELLXQAADTPEIQQ------------------LQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRX 248 (287)
T ss_dssp HHHHHHHHHHHHHTSCHHHHH------------------HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccCccHHH------------------HHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 444555666677777777444 49999999999999999999999999999999999999999
Q ss_pred CCch--HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002379 670 SSSE--HERLVYEGWILYDTGHREEALSRAEKSIS 702 (929)
Q Consensus 670 ~p~~--~~~~~~lg~~~~~~g~~~eA~~~~~~al~ 702 (929)
+|++ ..++..+|.++...|+.++|+..|++++.
T Consensus 249 ~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 249 DLTAADGQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp CTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred ccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 9998 88999999999999999999999999885
No 124
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.51 E-value=1e-13 Score=128.76 Aligned_cols=119 Identities=14% Similarity=0.145 Sum_probs=85.0
Q ss_pred HHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHH
Q 002379 631 QMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAF 710 (929)
Q Consensus 631 ~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~ 710 (929)
++..++|+.+..+..+|..++..|++++|+..|+++++.+|.++.++..+|.++..+|++++|+..|+++++++|++
T Consensus 4 r~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~--- 80 (126)
T 4gco_A 4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKF--- 80 (126)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---
T ss_pred HHHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhh---
Confidence 34456777777888888888888888888888888888888888888888888888888888888888888877766
Q ss_pred HHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC--CCHHHHHHHHH
Q 002379 711 FLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI--KHTRAHQGLAR 788 (929)
Q Consensus 711 ~~l~~~l~~~~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~--~~~~a~~~la~ 788 (929)
..+|+++|.++..+|++++|+..|++++++ ++..++.+++.
T Consensus 81 -------------------------------------~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~ 123 (126)
T 4gco_A 81 -------------------------------------IKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRN 123 (126)
T ss_dssp -------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred -------------------------------------hHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHH
Confidence 344666666666666666666666666666 34455555554
Q ss_pred H
Q 002379 789 V 789 (929)
Q Consensus 789 ~ 789 (929)
+
T Consensus 124 ~ 124 (126)
T 4gco_A 124 C 124 (126)
T ss_dssp H
T ss_pred h
Confidence 4
No 125
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.51 E-value=9.6e-14 Score=137.18 Aligned_cols=156 Identities=13% Similarity=0.016 Sum_probs=138.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHh-----
Q 002379 749 QALNNLGSIYVECGKLDQAENCYINALDI--KHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS----- 821 (929)
Q Consensus 749 ~a~~~lg~~~~~~g~~~eA~~~~~~al~~--~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg----- 821 (929)
..+..+|..+...|++++|+..|+++++. +++.++..+|.++...|++++|+..+++++...| ++..+...+
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELH 85 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHH
Confidence 45788999999999999999999999988 7789999999999999999999999999999999 776554443
Q ss_pred hhCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc--h-HHHHHHHHHHHcCCHHHHHH
Q 002379 822 EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDL--Q-MLHLRAAFYESIGDLTSAIR 898 (929)
Q Consensus 822 ~~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~--~-~~~~la~~~~~~g~~~~A~~ 898 (929)
..++..+|+..++++++.+|+++.+++.+|.++...|++++|+..|+++++.+|+. + .+..+|.++..+|+.++|+.
T Consensus 86 ~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~ 165 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIAS 165 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHH
T ss_pred hhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHH
Confidence 12233458999999999999999999999999999999999999999999999975 2 45578999999999999999
Q ss_pred HHHHHhc
Q 002379 899 DSQAALC 905 (929)
Q Consensus 899 ~~~~al~ 905 (929)
.|++++.
T Consensus 166 ~y~~al~ 172 (176)
T 2r5s_A 166 KYRRQLY 172 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999875
No 126
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.50 E-value=2.5e-13 Score=147.37 Aligned_cols=126 Identities=13% Similarity=0.048 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHcC----CC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCC------HH
Q 002379 750 ALNNLGSIYVECGKLDQAENCYINALDI----KH----TRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYS------AS 815 (929)
Q Consensus 750 a~~~lg~~~~~~g~~~eA~~~~~~al~~----~~----~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~ 815 (929)
++.++|.+|...|++++|+.+|++++++ +. ..++.++|.+|.. |++++|+..|++++++.|.. ..
T Consensus 78 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~ 156 (307)
T 2ifu_A 78 AFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAE 156 (307)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHH
Confidence 4666666666666666666666666655 11 2356666666666 66666666666666665543 22
Q ss_pred HHHHHh----hhCCHHHHHHHHHHHHhcCCCC------cHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc
Q 002379 816 AFEKRS----EYSDREMAKNDLNMATQLDPLR------TYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDL 877 (929)
Q Consensus 816 ~~~~lg----~~g~~~~A~~~~~~al~l~p~~------~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~ 877 (929)
++..+| ..|++++|+..|++++++.|.. ...+..+|.++...|++++|+..|++++ ++|+.
T Consensus 157 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~ 227 (307)
T 2ifu_A 157 LIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGF 227 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCC
Confidence 333333 3344444444444444443322 2356677777777777777777777777 77754
No 127
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.49 E-value=1.4e-13 Score=131.87 Aligned_cols=115 Identities=6% Similarity=-0.060 Sum_probs=103.6
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHH
Q 002379 630 NQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEA 709 (929)
Q Consensus 630 ~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~ 709 (929)
.+++..+|+++.+++.+|.++...|++++|+..|++++..+|+++.+|..+|.++...|++++|+..|+++++++|++
T Consensus 26 ~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~-- 103 (151)
T 3gyz_A 26 KDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKND-- 103 (151)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSC--
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCC--
Confidence 677888999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred HHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCHHHHH
Q 002379 710 FFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIKHTRAHQ 784 (929)
Q Consensus 710 ~~~l~~~l~~~~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~~~a~~ 784 (929)
..+++++|.+|..+|++++|+.+|++++++.+...+.
T Consensus 104 --------------------------------------~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~~~ 140 (151)
T 3gyz_A 104 --------------------------------------YTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEKLK 140 (151)
T ss_dssp --------------------------------------CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHH
T ss_pred --------------------------------------cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHH
Confidence 5668888999999999999999999999885544433
No 128
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.48 E-value=1e-12 Score=134.13 Aligned_cols=171 Identities=15% Similarity=0.037 Sum_probs=151.6
Q ss_pred hhHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----CHHHHHHHHHHHHHHccCCHHHHHHHh-
Q 002379 747 KGQALNNLGSIYVECGKLDQAENCYINALDIKHTRAHQGLARVYYLKN----ELKAAYDEMTKLLEKAQYSASAFEKRS- 821 (929)
Q Consensus 747 ~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~~~a~~~la~~~~~~g----~~~~A~~~~~~al~~~p~~~~~~~~lg- 821 (929)
...+++++|.+|...+++++|+.+|+++.+.+++.+++.+|.+|.. + ++++|+..|+++.+ +.++.++..+|
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~~~a~~~Lg~ 93 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGSKSGEIVLAR 93 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCCHHHHHHHHH
Confidence 4588999999999999999999999999999999999999999998 7 89999999999954 57888888888
Q ss_pred ---h----hCCHHHHHHHHHHHHhcCC--CCcHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Q 002379 822 ---E----YSDREMAKNDLNMATQLDP--LRTYPYRYRAAVLMD----DQKEVEAVEELSKAIAFKPDLQMLHLRAAFYE 888 (929)
Q Consensus 822 ---~----~g~~~~A~~~~~~al~l~p--~~~~~~~~la~~~~~----~g~~~eA~~~l~kal~~~p~~~~~~~la~~~~ 888 (929)
. .+++++|+.+|+++.+..| ..+.+++.+|.+|.. .+++++|+.+|+++++..++....+.+|.+|.
T Consensus 94 ~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~a~~~Lg~~y~ 173 (212)
T 3rjv_A 94 VLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLSRTGYAEYWAGMMFQ 173 (212)
T ss_dssp HHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTSCTTHHHHHHHHHHH
T ss_pred HHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 2 5799999999999999988 459999999999999 88999999999999998445556678899998
Q ss_pred Hc-C-----CHHHHHHHHHHHhccCCCCHHHHHHHHHHHh
Q 002379 889 SI-G-----DLTSAIRDSQAALCLDPNHMETLDLYNRARD 922 (929)
Q Consensus 889 ~~-g-----~~~~A~~~~~~al~l~P~~~~a~~~~~~l~~ 922 (929)
.. | ++++|+.+|+++.+. .++++...+.++.+
T Consensus 174 ~g~gg~~~~d~~~A~~~~~~A~~~--g~~~A~~~l~~l~~ 211 (212)
T 3rjv_A 174 QGEKGFIEPNKQKALHWLNVSCLE--GFDTGCEEFDRISK 211 (212)
T ss_dssp HCBTTTBCCCHHHHHHHHHHHHHH--TCHHHHHHHHHHHC
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHhhc
Confidence 64 4 999999999999998 46778888877753
No 129
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.47 E-value=2.7e-12 Score=138.66 Aligned_cols=173 Identities=11% Similarity=0.035 Sum_probs=104.6
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHhC-CHHHHHHHHHHHhcccC-CHhHHHHHHHHHHHh-c-cHHHHHHHHHHH
Q 002379 499 EKIVDLNYASELDPTLSFPYKYRAVAKMEEG-QIRAAISEIDRIIVFKL-SVDCLELRAWLFIAA-D-DYESALRDTLAL 574 (929)
Q Consensus 499 ~Ai~~~~kal~l~P~~~~a~~~~a~~~~~~g-~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~~-g-~~~~A~~~~~~a 574 (929)
+|+..+++++.++|++..+|..++.++...| .+++++..+++++..+| +..++..++++.... + ++++++..+.++
T Consensus 72 ~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~ 151 (349)
T 3q7a_A 72 RALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGS 151 (349)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 6777777777777777777777777777776 36777777777766666 666666666666665 5 555566555555
Q ss_pred HhhcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHHHHhc
Q 002379 575 LALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLN 654 (929)
Q Consensus 575 l~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~lg~~~~~~g 654 (929)
++.+|.+. .++...+.+....+.++.+.. .
T Consensus 152 L~~dpkNy------~AW~~R~wvl~~l~~~~~~~~--------------------------------------------~ 181 (349)
T 3q7a_A 152 LLPDPKNY------HTWAYLHWLYSHFSTLGRISE--------------------------------------------A 181 (349)
T ss_dssp TSSCTTCH------HHHHHHHHHHHHHHHTTCCCH--------------------------------------------H
T ss_pred HHhCCCCH------HHHHHHHHHHHHhccccccch--------------------------------------------h
Confidence 55555555 444444444444333321100 0
Q ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHhhccch-HHHHHHHHHHHhcC
Q 002379 655 CQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGH-------REEALSRAEKSISIERTF-EAFFLKAYILADTN 721 (929)
Q Consensus 655 ~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~-------~~eA~~~~~~al~~~p~~-~~~~~l~~~l~~~~ 721 (929)
...++++.++++++.+|.+..+|.+++.++...++ ++++++++++++.++|++ .+|+.+...+...+
T Consensus 182 ~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~ 256 (349)
T 3q7a_A 182 QWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFS 256 (349)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence 01166666666666666666666666666666654 566666666666666666 66655555555544
No 130
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.47 E-value=5.9e-14 Score=134.50 Aligned_cols=107 Identities=8% Similarity=-0.115 Sum_probs=71.9
Q ss_pred HHHHHccCCHHHHHHHh----hhCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHH
Q 002379 805 KLLEKAQYSASAFEKRS----EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQML 880 (929)
Q Consensus 805 ~al~~~p~~~~~~~~lg----~~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~ 880 (929)
++++.+|++..+++.+| ..|++++|+..|++++.++|.++.+|..+|.++...|++++|+..|+++++++|+++..
T Consensus 27 ~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~ 106 (151)
T 3gyz_A 27 DINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTP 106 (151)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHH
Confidence 33334444444444444 33444444445555555566666677777888888888888888888888888877644
Q ss_pred H-HHHHHHHHcCCHHHHHHHHHHHhccCCCCH
Q 002379 881 H-LRAAFYESIGDLTSAIRDSQAALCLDPNHM 911 (929)
Q Consensus 881 ~-~la~~~~~~g~~~~A~~~~~~al~l~P~~~ 911 (929)
+ .+|.+|..+|++++|+..|+++++++|+.+
T Consensus 107 ~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 107 VFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 4 668888888888888888888888888765
No 131
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.46 E-value=1.8e-12 Score=140.55 Aligned_cols=226 Identities=15% Similarity=0.054 Sum_probs=167.1
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHH-hCCHHHHHHHHHHHhcccCCHhHHHHHHHHHHHhccHHHHHHHHHHHHh
Q 002379 498 REKIVDLNYASELDPTLSFPYKYRAVAKME-EGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLA 576 (929)
Q Consensus 498 ~~Ai~~~~kal~l~P~~~~a~~~~a~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~ 576 (929)
.+|...++++.+..+.. ++. .+++++|+..|+++ |.++...|++++|+..|.++++
T Consensus 8 ~eA~~~~~~a~k~~~~~----------~~~~~~~~~~A~~~~~~a-------------~~~~~~~g~~~~A~~~~~~al~ 64 (307)
T 2ifu_A 8 SEAHEHIAKAEKYLKTS----------FMKWKPDYDSAASEYAKA-------------AVAFKNAKQLEQAKDAYLQEAE 64 (307)
T ss_dssp HHHHHHHHHHHHHHCCC----------SSSCSCCHHHHHHHHHHH-------------HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccc----------ccCCCCCHHHHHHHHHHH-------------HHHHHHcCCHHHHHHHHHHHHH
Confidence 37778888887766642 112 57888898888877 5677888999999999999998
Q ss_pred hcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCC------ChHHHHHHHHHH
Q 002379 577 LESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPG------KSFLRFRQSLLL 650 (929)
Q Consensus 577 ~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~~p~------~~~~~~~lg~~~ 650 (929)
+.+..........++..++.++...|++++|...+ ++++++.+. .+.++..+|.+|
T Consensus 65 ~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~------------------~~Al~l~~~~g~~~~~a~~~~~lg~~~ 126 (307)
T 2ifu_A 65 AHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYI------------------EKASVMYVENGTPDTAAMALDRAGKLM 126 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHH------------------HHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHH------------------HHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 87655433233367777888888888999885555 777665321 246788999999
Q ss_pred HHhcCHHHHHHHHHHHHhcCCch------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHHHHHhcCCCC
Q 002379 651 LRLNCQKAAMRCLRLARNHSSSE------HERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDP 724 (929)
Q Consensus 651 ~~~g~~~~A~~~l~~al~~~p~~------~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~l~~~l~~~~~~~ 724 (929)
.. |++++|+.+|++++++.|.. ..++..+|.++..+|++++|+..|++++.+.|+......
T Consensus 127 ~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~------------ 193 (307)
T 2ifu_A 127 EP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPT------------ 193 (307)
T ss_dssp TT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH------------
T ss_pred Hc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhH------------
Confidence 88 99999999999999887643 567889999999999999999999999998776510000
Q ss_pred CChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCH-------HHHHHHHHHHHHhCCHH
Q 002379 725 ESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIKHT-------RAHQGLARVYYLKNELK 797 (929)
Q Consensus 725 ~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~~-------~a~~~la~~~~~~g~~~ 797 (929)
...++..+|.++...|++++|+.+|++++ +.+. .....++..+ ..|+.+
T Consensus 194 ----------------------~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~ 249 (307)
T 2ifu_A 194 ----------------------CYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEE 249 (307)
T ss_dssp ----------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHH
T ss_pred ----------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHH
Confidence 02357888999999999999999999999 7331 2344555544 456654
Q ss_pred HHHH
Q 002379 798 AAYD 801 (929)
Q Consensus 798 ~A~~ 801 (929)
....
T Consensus 250 ~~~~ 253 (307)
T 2ifu_A 250 QLLR 253 (307)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 132
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.45 E-value=1.6e-12 Score=139.55 Aligned_cols=71 Identities=17% Similarity=0.048 Sum_probs=45.2
Q ss_pred CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccc
Q 002379 636 DPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERT 706 (929)
Q Consensus 636 ~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~ 706 (929)
.|.+...++.+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++..+|+
T Consensus 113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~ 183 (287)
T 3qou_A 113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQD 183 (287)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCS
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcc
Confidence 35566666666666666666666666666666666666666666666666666666666666666665553
No 133
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.44 E-value=1.1e-12 Score=155.25 Aligned_cols=156 Identities=12% Similarity=0.065 Sum_probs=134.8
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc
Q 002379 626 LAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIER 705 (929)
Q Consensus 626 l~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p 705 (929)
+..++++++.+|+++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++++|
T Consensus 9 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 88 (568)
T 2vsy_A 9 LLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAP 88 (568)
T ss_dssp ------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 44448999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC--CCHHHH
Q 002379 706 TFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI--KHTRAH 783 (929)
Q Consensus 706 ~~~~~~~l~~~l~~~~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~--~~~~a~ 783 (929)
++ ..++.++|.++...|++++|++.|+++++. ++..++
T Consensus 89 ~~----------------------------------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 128 (568)
T 2vsy_A 89 EH----------------------------------------PGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYIT 128 (568)
T ss_dssp TC----------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CC----------------------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 77 456888999999999999999999999998 567899
Q ss_pred HHHHHHHHHh---CCHHHHHHHHHHHHHHccCCHHHHHHHh
Q 002379 784 QGLARVYYLK---NELKAAYDEMTKLLEKAQYSASAFEKRS 821 (929)
Q Consensus 784 ~~la~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~lg 821 (929)
.++|.++... |++++|.+.++++++.+|++...+..++
T Consensus 129 ~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 129 AQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLS 169 (568)
T ss_dssp HHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCCSCHHHHTT
T ss_pred HHHHHHHHHhhccccHHHHHHHHHHHHhcCCcccChHHHhC
Confidence 9999999999 9999999999999999999888777665
No 134
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.44 E-value=5.5e-13 Score=142.63 Aligned_cols=197 Identities=12% Similarity=-0.022 Sum_probs=123.0
Q ss_pred CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHHH
Q 002379 637 PGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYI 716 (929)
Q Consensus 637 p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~l~~~ 716 (929)
|.++..+..+|..+...|++++|+..|+++++.+|+++.++.++|.++...|++++|+..++++++++|++
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~--------- 71 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQS--------- 71 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTC---------
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---------
Confidence 45566666777777777777777777777777777777777777777777777777777777777666655
Q ss_pred HHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCH
Q 002379 717 LADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIKHTRAHQGLARVYYLKNEL 796 (929)
Q Consensus 717 l~~~~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~~~a~~~la~~~~~~g~~ 796 (929)
..+++++|.++...|++++|+..|+++++
T Consensus 72 -------------------------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~-------------------- 100 (281)
T 2c2l_A 72 -------------------------------VKAHFFLGQCQLEMESYDEAIANLQRAYS-------------------- 100 (281)
T ss_dssp -------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--------------------
T ss_pred -------------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------------------
Confidence 23355555555555555555555555554
Q ss_pred HHHHHHHHHHHHHccCCHHHHHHHh-hhCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 002379 797 KAAYDEMTKLLEKAQYSASAFEKRS-EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKP 875 (929)
Q Consensus 797 ~~A~~~~~~al~~~p~~~~~~~~lg-~~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p 875 (929)
.+|++...+.... ......++...........|.+......++.++ .|++++|++.++++++.+|
T Consensus 101 ------------l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~--~~~~~~A~~~~~~al~~~p 166 (281)
T 2c2l_A 101 ------------LAKEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQESELHSYLTRLI--AAERERELEECQRNHEGHE 166 (281)
T ss_dssp ------------HHHHTTCCCCSHHHHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHH--HHHHHHHHTTTSGGGTTTS
T ss_pred ------------hCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH--HHHHHHHHHHHHhhhcccc
Confidence 4443311000000 000112222233333456677778877777665 6899999999999999999
Q ss_pred CchHHH-HHHHHHHHc-CCHHHHHHHHHHHhccC
Q 002379 876 DLQMLH-LRAAFYESI-GDLTSAIRDSQAALCLD 907 (929)
Q Consensus 876 ~~~~~~-~la~~~~~~-g~~~~A~~~~~~al~l~ 907 (929)
++.... .++.++... +.+++|.+.|+++.+..
T Consensus 167 ~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~~ 200 (281)
T 2c2l_A 167 DDGHIRAQQACIEAKHDKYMADMDELFSQVDEKR 200 (281)
T ss_dssp CHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCTT
T ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 886554 345555544 77889999999888753
No 135
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.44 E-value=9.7e-13 Score=155.86 Aligned_cols=159 Identities=11% Similarity=0.008 Sum_probs=85.5
Q ss_pred hhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccC-CHhHHHHHHHHHHHhccHHHHHHHHHHHH
Q 002379 497 GREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLALL 575 (929)
Q Consensus 497 ~~~Ai~~~~kal~l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~~g~~~~A~~~~~~al 575 (929)
.++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++..| ++..+..+|.++...|++++|+..|++++
T Consensus 5 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 84 (568)
T 2vsy_A 5 GPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQAS 84 (568)
T ss_dssp ----------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34677777777777777777777777777777777777777777777776 56667777777777777777777777777
Q ss_pred hhcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHHHHh--
Q 002379 576 ALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRL-- 653 (929)
Q Consensus 576 ~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~lg~~~~~~-- 653 (929)
+.+|++. .++..+|.++...|++++|...+ +++++.+|+++.++..+|.++..+
T Consensus 85 ~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~------------------~~al~~~p~~~~~~~~l~~~~~~~~~ 140 (568)
T 2vsy_A 85 DAAPEHP------GIALWLGHALEDAGQAEAAAAAY------------------TRAHQLLPEEPYITAQLLNWRRRLCD 140 (568)
T ss_dssp HHCTTCH------HHHHHHHHHHHHTTCHHHHHHHH------------------HHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred hcCCCCH------HHHHHHHHHHHHcCCHHHHHHHH------------------HHHHHhCCCCHHHHHHHHHHHHHhhc
Confidence 7766665 34444444444444444443332 444444444444444444444444
Q ss_pred -cCHHHHHHHHHHHHhcCCchHHHHHH
Q 002379 654 -NCQKAAMRCLRLARNHSSSEHERLVY 679 (929)
Q Consensus 654 -g~~~~A~~~l~~al~~~p~~~~~~~~ 679 (929)
|++++|+..++++++.+|.+...+..
T Consensus 141 ~g~~~~A~~~~~~al~~~p~~~~~~~~ 167 (568)
T 2vsy_A 141 WRALDVLSAQVRAAVAQGVGAVEPFAF 167 (568)
T ss_dssp CTTHHHHHHHHHHHHHHTCCCSCHHHH
T ss_pred cccHHHHHHHHHHHHhcCCcccChHHH
Confidence 44444444444444444444443333
No 136
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.43 E-value=3e-13 Score=129.42 Aligned_cols=122 Identities=16% Similarity=0.006 Sum_probs=87.2
Q ss_pred HHHHHHHccCCHHHHHHHh----hhCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCch
Q 002379 803 MTKLLEKAQYSASAFEKRS----EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQ 878 (929)
Q Consensus 803 ~~~al~~~p~~~~~~~~lg----~~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~ 878 (929)
+++++..+|++..+++.+| ..|++++|+..|++++..+|.++.+|+.+|.++...|++++|+..|++++.++|+++
T Consensus 10 ~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 89 (148)
T 2vgx_A 10 IAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEP 89 (148)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT
T ss_pred HHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc
Confidence 3444444444444444444 334555555555555566667777788888888889999999999999999888886
Q ss_pred HHH-HHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHhhh
Q 002379 879 MLH-LRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNRARDQA 924 (929)
Q Consensus 879 ~~~-~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~l~~~~ 924 (929)
..+ .+|.+|..+|++++|+..|+++++++|++++......++....
T Consensus 90 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l 136 (148)
T 2vgx_A 90 RFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSSML 136 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHHHHHHHH
Confidence 554 6788999999999999999999998888887766666655443
No 137
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.43 E-value=3.9e-13 Score=140.56 Aligned_cols=225 Identities=11% Similarity=-0.011 Sum_probs=175.0
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHH-------HHHHHHcCCHHHHHHHHHHHHhhccch-HHHHHHH
Q 002379 643 RFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYE-------GWILYDTGHREEALSRAEKSISIERTF-EAFFLKA 714 (929)
Q Consensus 643 ~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~l-------g~~~~~~g~~~eA~~~~~~al~~~p~~-~~~~~l~ 714 (929)
++..|.-+ .-+++..|.+.|.++++.+|+..++|..+ +.++...++..+++..+++.+.+.|.. .+++.+.
T Consensus 10 ~~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~ 88 (282)
T 4f3v_A 10 LFESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIG 88 (282)
T ss_dssp HHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECC
T ss_pred HHHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccC
Confidence 34555555 57999999999999999999999999999 899999999999999999999999987 2222100
Q ss_pred HHHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCHH-HHHHHHHHHHHh
Q 002379 715 YILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIKHTR-AHQGLARVYYLK 793 (929)
Q Consensus 715 ~~l~~~~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~~~-a~~~la~~~~~~ 793 (929)
-.|.+.. -....+......++.++...|+|++|.+.|+..+..++.. +.+.+|.++.+.
T Consensus 89 g~y~~~~--------------------~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~ 148 (282)
T 4f3v_A 89 GLYGDIT--------------------YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAA 148 (282)
T ss_dssp TTTCCCE--------------------EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHT
T ss_pred Ccccccc--------------------cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHc
Confidence 0000000 0012245778889999999999999999999888775433 889999999999
Q ss_pred CCHHHHHHHHHHHHHHccCCHHHHHHHhhhCCHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 002379 794 NELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPL-RTYPYRYRAAVLMDDQKEVEAVEELSKAIA 872 (929)
Q Consensus 794 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~g~~~~A~~~~~~al~l~p~-~~~~~~~la~~~~~~g~~~eA~~~l~kal~ 872 (929)
+++++|+..++++....+ |. ...+++++|.++..+|++++|+..|++++.
T Consensus 149 ~r~~dA~~~l~~a~~~~d-----------------------------~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~ 199 (282)
T 4f3v_A 149 ERWTDVIDQVKSAGKWPD-----------------------------KFLAGAAGVAHGVAAANLALFTEAERRLTEAND 199 (282)
T ss_dssp TCHHHHHHHHTTGGGCSC-----------------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHhhccCC-----------------------------cccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 999999998875543210 10 134788899999999999999999999986
Q ss_pred cC--CC-ch-HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHH
Q 002379 873 FK--PD-LQ-MLHLRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYN 918 (929)
Q Consensus 873 ~~--p~-~~-~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~ 918 (929)
-. |. .. ..+.+|.++.++|+.++|...|++++..+|+ +.+...+.
T Consensus 200 g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~ 248 (282)
T 4f3v_A 200 SPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALK 248 (282)
T ss_dssp STTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred CCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence 54 44 32 4567899999999999999999999999999 87776653
No 138
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.42 E-value=3e-12 Score=130.62 Aligned_cols=174 Identities=13% Similarity=0.031 Sum_probs=123.5
Q ss_pred cHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcC----CHHHHHHHHHHH
Q 002379 625 SLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTG----HREEALSRAEKS 700 (929)
Q Consensus 625 ~l~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g----~~~eA~~~~~~a 700 (929)
++..|+++.+. .++.+++.+|.+|...+++++|+.+|+++.+. .++.+++.+|.+|.. + ++++|+.+|+++
T Consensus 5 A~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A 79 (212)
T 3rjv_A 5 PGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEKA 79 (212)
T ss_dssp TTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHH
Confidence 45566666654 57777777777777777777777777777664 456777777777776 5 777777777777
Q ss_pred HhhccchHHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHH----cCCHHHHHHHHHHHHc
Q 002379 701 ISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVE----CGKLDQAENCYINALD 776 (929)
Q Consensus 701 l~~~p~~~~~~~l~~~l~~~~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~----~g~~~eA~~~~~~al~ 776 (929)
.+. .+ ..+++++|.+|.. .+++++|+.+|+++.+
T Consensus 80 ~~~--g~----------------------------------------~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 117 (212)
T 3rjv_A 80 VEA--GS----------------------------------------KSGEIVLARVLVNRQAGATDVAHAITLLQDAAR 117 (212)
T ss_dssp HHT--TC----------------------------------------HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTS
T ss_pred HHC--CC----------------------------------------HHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHH
Confidence 542 22 4557788888876 7788888888888888
Q ss_pred CCC----HHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHccCCHHHHHHHhhhCCHHHHHHHHHHHHhcCCCCcHHHH
Q 002379 777 IKH----TRAHQGLARVYYL----KNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYR 848 (929)
Q Consensus 777 ~~~----~~a~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~g~~~~A~~~~~~al~l~p~~~~~~~ 848 (929)
.++ +.+++++|.+|.. .+++++|+..|++++ +. |.++.+++
T Consensus 118 ~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~------------------------------~~-~~~~~a~~ 166 (212)
T 3rjv_A 118 DSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS------------------------------SL-SRTGYAEY 166 (212)
T ss_dssp STTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH------------------------------HT-SCTTHHHH
T ss_pred cCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH------------------------------Hc-CCCHHHHH
Confidence 766 6788888887776 555555555555554 44 44566778
Q ss_pred HHHHHHHhc-C-----CHHHHHHHHHHHHhcCCC
Q 002379 849 YRAAVLMDD-Q-----KEVEAVEELSKAIAFKPD 876 (929)
Q Consensus 849 ~la~~~~~~-g-----~~~eA~~~l~kal~~~p~ 876 (929)
.+|.+|... | ++++|+.+|+++.+....
T Consensus 167 ~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~ 200 (212)
T 3rjv_A 167 WAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFD 200 (212)
T ss_dssp HHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence 888888753 2 889999999988887543
No 139
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.41 E-value=3.2e-12 Score=133.64 Aligned_cols=198 Identities=10% Similarity=-0.085 Sum_probs=162.3
Q ss_pred HhccHHHHHHHHHHHHhhcCCchhhhccccHHHHH-------HHHHHhhcccchHHHHHHhhhccccccccccHHHHHHH
Q 002379 560 AADDYESALRDTLALLALESNYMMFHGRVSGDHLV-------KLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQM 632 (929)
Q Consensus 560 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~ll-------~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~a 632 (929)
..+++..|...|.+++.++|+.. +++..+ +.+.....+..++.... .+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~------Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~------------------~~~ 73 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESAC------DAWIGRIRCGDTDRVTLFRAWYSRRNFGQL------------------SGS 73 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCH------HHHHHHHHTTCCCHHHHHHHHHTGGGTTHH------------------HHT
T ss_pred cCCCHHHHHHHHHHHHHhChhhh------HHHHhHHHccCCcHHHHHHHHHHHHHHHHH------------------HHH
Confidence 57899999999999999999999 556555 56666666666663333 677
Q ss_pred HhcCCCCh---------------------HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHH
Q 002379 633 LINDPGKS---------------------FLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHRE 691 (929)
Q Consensus 633 l~~~p~~~---------------------~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~ 691 (929)
+.+.|... .++..++.++...|+|++|.+.|+.++...|.+. .++.+|.++++.|+++
T Consensus 74 l~l~p~~l~a~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~ 152 (282)
T 4f3v_A 74 VQISMSTLNARIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWT 152 (282)
T ss_dssp TTCCGGGGCCEEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHH
T ss_pred hcCChhhhhhhhccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHH
Confidence 77666543 3445588899999999999999999999999988 9999999999999999
Q ss_pred HHHHHHHHHHhhccchHHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHH
Q 002379 692 EALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCY 771 (929)
Q Consensus 692 eA~~~~~~al~~~p~~~~~~~l~~~l~~~~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~ 771 (929)
+|+..|+++....+.. ....+++.+|.++..+|++++|+.+|
T Consensus 153 dA~~~l~~a~~~~d~~--------------------------------------~~~~a~~~LG~al~~LG~~~eAl~~l 194 (282)
T 4f3v_A 153 DVIDQVKSAGKWPDKF--------------------------------------LAGAAGVAHGVAAANLALFTEAERRL 194 (282)
T ss_dssp HHHHHHTTGGGCSCHH--------------------------------------HHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhhccCCcc--------------------------------------cHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999776643111 01346899999999999999999999
Q ss_pred HHHHcCC-----CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHh
Q 002379 772 INALDIK-----HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS 821 (929)
Q Consensus 772 ~~al~~~-----~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 821 (929)
++++... .+++++.+|.++..+|+.++|...|++++..+|+ ..++..+.
T Consensus 195 ~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~ 248 (282)
T 4f3v_A 195 TEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALK 248 (282)
T ss_dssp HHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred HHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence 9998664 3368999999999999999999999999999999 77766554
No 140
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.40 E-value=6e-13 Score=142.35 Aligned_cols=87 Identities=13% Similarity=0.150 Sum_probs=82.3
Q ss_pred cccccHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002379 621 DDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKS 700 (929)
Q Consensus 621 ~~~~~l~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~a 700 (929)
+...++..|.+++..+|+++.++..+|.+|..+|++++|+..++++++++|+++.+++.+|.++...|++++|+..|+++
T Consensus 19 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 98 (281)
T 2c2l_A 19 KYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRA 98 (281)
T ss_dssp CHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33456889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhhccch
Q 002379 701 ISIERTF 707 (929)
Q Consensus 701 l~~~p~~ 707 (929)
++++|++
T Consensus 99 l~l~p~~ 105 (281)
T 2c2l_A 99 YSLAKEQ 105 (281)
T ss_dssp HHHHHHT
T ss_pred HHhCccc
Confidence 9998865
No 141
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.40 E-value=4.3e-13 Score=157.32 Aligned_cols=184 Identities=10% Similarity=0.131 Sum_probs=168.8
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHhCC----------HHHHHHHHHHHhcccC-CHhHHHHHHHHHHHhc--cHH
Q 002379 499 EKIVDLNYASELDPTLSFPYKYRAVAKMEEGQ----------IRAAISEIDRIIVFKL-SVDCLELRAWLFIAAD--DYE 565 (929)
Q Consensus 499 ~Ai~~~~kal~l~P~~~~a~~~~a~~~~~~g~----------~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~~g--~~~ 565 (929)
+|+..++++++++|++..+|.+++.++...|+ +++|+..+++++..+| +..+|..++++....+ +++
T Consensus 47 eal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~ 126 (567)
T 1dce_A 47 SVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWA 126 (567)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHH
T ss_pred HHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHH
Confidence 89999999999999999999999999999998 9999999999999999 8889999999999999 779
Q ss_pred HHHHHHHHHHhhcCCchhhhccccHHHHHHHHHHhhc-ccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHH
Q 002379 566 SALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVR-SWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRF 644 (929)
Q Consensus 566 ~A~~~~~~al~~~p~~~~~~~~~~a~~ll~~~~~~~~-~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~ 644 (929)
+|+..+.++++.+|.+. .++...+.+....+ .++++..+. .++++.+|.+..+|.
T Consensus 127 ~el~~~~k~l~~d~~N~------~aW~~R~~~l~~l~~~~~~el~~~------------------~~~I~~~p~n~saW~ 182 (567)
T 1dce_A 127 RELELCARFLEADERNF------HCWDYRRFVAAQAAVAPAEELAFT------------------DSLITRNFSNYSSWH 182 (567)
T ss_dssp HHHHHHHHHHHHCTTCH------HHHHHHHHHHHHTCCCHHHHHHHH------------------HTTTTTTCCCHHHHH
T ss_pred HHHHHHHHHHhhccccc------cHHHHHHHHHHHcCCChHHHHHHH------------------HHHHHHCCCCccHHH
Confidence 99999999999999999 77888888888888 777775444 999999999999999
Q ss_pred HHHHHHHHh--------------cCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHH------------HHHHHH
Q 002379 645 RQSLLLLRL--------------NCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREE------------ALSRAE 698 (929)
Q Consensus 645 ~lg~~~~~~--------------g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~e------------A~~~~~ 698 (929)
.++.++..+ +.+++|++++.+|+..+|++..+|++++.++...+++++ |+..|.
T Consensus 183 ~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~f~ 262 (567)
T 1dce_A 183 YRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDVLCCVHVSREEACLSVCFS 262 (567)
T ss_dssp HHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSCEEEEEEETTTTEEEEEEE
T ss_pred HHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccceeeeeeccCCceEEEEec
Confidence 999999885 668999999999999999999999999999999998777 666678
Q ss_pred HHHhhccc
Q 002379 699 KSISIERT 706 (929)
Q Consensus 699 ~al~~~p~ 706 (929)
+++.++|.
T Consensus 263 ~~i~~~~~ 270 (567)
T 1dce_A 263 RPLTVGSR 270 (567)
T ss_dssp EEECTTBT
T ss_pred cceecccc
Confidence 88877765
No 142
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.36 E-value=1e-12 Score=124.69 Aligned_cols=102 Identities=16% Similarity=0.014 Sum_probs=80.1
Q ss_pred hCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHH-HHHHHHHHcCCHHHHHHHHH
Q 002379 823 YSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLH-LRAAFYESIGDLTSAIRDSQ 901 (929)
Q Consensus 823 ~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~-~la~~~~~~g~~~~A~~~~~ 901 (929)
.|++++|+..|++++..+|.++.+|..+|.++...|++++|+..|++++.++|+++..+ .+|.+|..+|++++|+..|+
T Consensus 31 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 110 (142)
T 2xcb_A 31 AGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFY 110 (142)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34444555555555555666777788889999999999999999999999999887655 67999999999999999999
Q ss_pred HHhccCCCCHHHHHHHHHHHhhh
Q 002379 902 AALCLDPNHMETLDLYNRARDQA 924 (929)
Q Consensus 902 ~al~l~P~~~~a~~~~~~l~~~~ 924 (929)
++++++|++++......++....
T Consensus 111 ~al~~~p~~~~~~~~~~~~~~~l 133 (142)
T 2xcb_A 111 SARALAAAQPAHEALAARAGAML 133 (142)
T ss_dssp HHHHHHHTCGGGHHHHHHHHHHH
T ss_pred HHHHhCCCCcchHHHHHHHHHHH
Confidence 99999998888777776665544
No 143
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.36 E-value=2.3e-11 Score=112.64 Aligned_cols=129 Identities=26% Similarity=0.264 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHh----hhCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhc
Q 002379 782 AHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS----EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDD 857 (929)
Q Consensus 782 a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg----~~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~ 857 (929)
+++.+|.++...|++++|+..++++++..|++...+..++ ..|++++|+..+++++...|....++..+|.++...
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHh
Confidence 3445555555555555555555555555555555554444 345555666666666666666777778888888888
Q ss_pred CCHHHHHHHHHHHHhcCCCchHHH-HHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 002379 858 QKEVEAVEELSKAIAFKPDLQMLH-LRAAFYESIGDLTSAIRDSQAALCLDPNH 910 (929)
Q Consensus 858 g~~~eA~~~l~kal~~~p~~~~~~-~la~~~~~~g~~~~A~~~~~~al~l~P~~ 910 (929)
|++++|+..++++++..|++...+ .+|.++...|++++|...+++++..+|++
T Consensus 83 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136 (136)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence 999999999999888888776444 67888888999999999999988888863
No 144
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.35 E-value=1e-13 Score=152.35 Aligned_cols=185 Identities=12% Similarity=0.013 Sum_probs=137.5
Q ss_pred HHHHHHHH----HHhcCCCChHHHHHHHHHHH------------HhCCHHHHHHHHHHHhcccC-CHhHHHHHHHHHHHh
Q 002379 499 EKIVDLNY----ASELDPTLSFPYKYRAVAKM------------EEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAA 561 (929)
Q Consensus 499 ~Ai~~~~k----al~l~P~~~~a~~~~a~~~~------------~~g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~~ 561 (929)
+|+..+++ ++.++|.. +|..+|.... ..+++++|+..+++++...| .+..+..+|.+++..
T Consensus 83 ~al~~~~~Ge~~~l~i~p~~--ayg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~ 160 (336)
T 1p5q_A 83 RAIQRMEKGEHSIVYLKPSY--AFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKE 160 (336)
T ss_dssp HHHTTCCTTCEEEEEECTTT--TTTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCCCeEEEEECCcc--ccCcCCCCccCCCCCCeEEEEEEEeecccccchhcCCHHHHHHHHHHHHHHHHHHHHC
Confidence 55555666 66667765 4444443332 45566777777777766555 566688888888888
Q ss_pred ccHHHHHHHHHHHHhhcCCchhh---------hccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHH
Q 002379 562 DDYESALRDTLALLALESNYMMF---------HGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQM 632 (929)
Q Consensus 562 g~~~~A~~~~~~al~~~p~~~~~---------~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~a 632 (929)
|++++|+..|++++.+.|++... .....++..++.++...|++++|+..+ +++
T Consensus 161 g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~------------------~~a 222 (336)
T 1p5q_A 161 GKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESC------------------NKA 222 (336)
T ss_dssp TCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH------------------HHH
T ss_pred CCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH------------------HHH
Confidence 88888888888888888887310 000156677888888888888885555 888
Q ss_pred HhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHH-HHHHHHHHhh
Q 002379 633 LINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEA-LSRAEKSISI 703 (929)
Q Consensus 633 l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA-~~~~~~al~~ 703 (929)
++.+|+++.+++.+|.+|..+|++++|+..|+++++++|++..++..+|.++...|++++| ...|++++..
T Consensus 223 l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 223 LELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFER 294 (336)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888888888888888888888888888888888888888888888888 4566666653
No 145
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.34 E-value=4.5e-12 Score=121.21 Aligned_cols=109 Identities=9% Similarity=-0.014 Sum_probs=95.7
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchH
Q 002379 629 INQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFE 708 (929)
Q Consensus 629 ~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~ 708 (929)
+.+++..+|++..+++.+|..+...|++++|+..|++++..+|.++.+|+.+|.++...|++++|+..|++++.++|++
T Consensus 10 ~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~- 88 (148)
T 2vgx_A 10 IAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXE- 88 (148)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-
T ss_pred HHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC-
Confidence 4788888999999999999999999999999999999999999999999999999999999999999999999988877
Q ss_pred HHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC
Q 002379 709 AFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI 777 (929)
Q Consensus 709 ~~~~l~~~l~~~~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~ 777 (929)
..+++++|.++...|++++|+..|++++++
T Consensus 89 ---------------------------------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 89 ---------------------------------------PRFPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp ---------------------------------------THHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ---------------------------------------chHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 455777888888888888888888888877
No 146
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.34 E-value=2.5e-11 Score=123.26 Aligned_cols=128 Identities=18% Similarity=0.161 Sum_probs=103.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHh----hhC
Q 002379 749 QALNNLGSIYVECGKLDQAENCYINALDIKHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS----EYS 824 (929)
Q Consensus 749 ~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg----~~g 824 (929)
..++++|..+...|++++|+..|++++.. ++.+++++|.++...|++++|+..+++++..+|++..++..+| ..|
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~ 85 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQDP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTE 85 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSSSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHcCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcc
Confidence 34788999999999999999999999643 6789999999999999999999999999998888877777776 457
Q ss_pred CHHHHHHHHHHHHhcCCCCc----------------HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc
Q 002379 825 DREMAKNDLNMATQLDPLRT----------------YPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDL 877 (929)
Q Consensus 825 ~~~~A~~~~~~al~l~p~~~----------------~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~ 877 (929)
++++|+..|+++++..|.+. .++..+|.++...|++++|+..|++++++.|++
T Consensus 86 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 86 KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred cHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 77777777777777666655 677777777777777777777777777777765
No 147
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.32 E-value=6.3e-12 Score=119.15 Aligned_cols=110 Identities=11% Similarity=-0.001 Sum_probs=91.6
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch
Q 002379 628 VINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF 707 (929)
Q Consensus 628 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~ 707 (929)
.+.+++..+|++...++.+|..+...|++++|+..|++++..+|+++.+|..+|.++...|++++|+..|++++.++|++
T Consensus 6 ~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 85 (142)
T 2xcb_A 6 TLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINE 85 (142)
T ss_dssp ---CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred hHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence 34677788888888888999999999999999999999999999888899999999999999999999999999888877
Q ss_pred HHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC
Q 002379 708 EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI 777 (929)
Q Consensus 708 ~~~~~l~~~l~~~~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~ 777 (929)
..+++++|.++...|++++|+..|++++++
T Consensus 86 ----------------------------------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 86 ----------------------------------------PRFPFHAAECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp ----------------------------------------THHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ----------------------------------------cHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 445677788888888888888888888776
No 148
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.32 E-value=3.6e-11 Score=111.28 Aligned_cols=132 Identities=14% Similarity=0.098 Sum_probs=97.5
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHH
Q 002379 551 LELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVIN 630 (929)
Q Consensus 551 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~ 630 (929)
+..+|.++...|++++|+..++++++..|++. ..+..++.++...|++++|..++ .
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~~a~~~~~~~~~~~A~~~~------------------~ 59 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDPRSA------EAWYNLGNAYYKQGDYDEAIEYY------------------Q 59 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHHHTCHHHHHHHH------------------H
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCCcch------hHHHHHHHHHHHhcCHHHHHHHH------------------H
Confidence 44455555555666666666666665555554 44445555555556666554444 5
Q ss_pred HHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccc
Q 002379 631 QMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERT 706 (929)
Q Consensus 631 ~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~ 706 (929)
+++...|.++.++..+|.++...|++++|+..++++++..|.++.++..+|.++...|++++|...+++++..+|+
T Consensus 60 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 60 KALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 5566666666777888889999999999999999999999998999999999999999999999999999988875
No 149
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.31 E-value=2.2e-11 Score=112.93 Aligned_cols=112 Identities=12% Similarity=0.101 Sum_probs=95.8
Q ss_pred ChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch-HHHHHHHHHH
Q 002379 639 KSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYIL 717 (929)
Q Consensus 639 ~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~~~~~l~~~l 717 (929)
.+.++..+|..++..|++++|+..|+++++++|+++.++.++|.+|..+|++++|+..++++++++|++ ..+..+
T Consensus 7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~---- 82 (127)
T 4gcn_A 7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLI---- 82 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHH----
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHH----
Confidence 456788999999999999999999999999999999999999999999999999999999999999977 322222
Q ss_pred HhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC-CCHHHHH
Q 002379 718 ADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI-KHTRAHQ 784 (929)
Q Consensus 718 ~~~~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~-~~~~a~~ 784 (929)
+.++.++|.++...|++++|+.+|++++.. .+++...
T Consensus 83 ------------------------------a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~~~~~ 120 (127)
T 4gcn_A 83 ------------------------------AKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDPELVK 120 (127)
T ss_dssp ------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCHHHHH
T ss_pred ------------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCHHHHH
Confidence 235788899999999999999999999887 3444433
No 150
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.31 E-value=5e-12 Score=138.84 Aligned_cols=143 Identities=10% Similarity=0.051 Sum_probs=128.8
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCch---------------HHHHHHHHHHHHHcCCHHH
Q 002379 628 VINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE---------------HERLVYEGWILYDTGHREE 692 (929)
Q Consensus 628 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~---------------~~~~~~lg~~~~~~g~~~e 692 (929)
.+.+++..+|..+.++..+|.++...|++++|+..|+++++++|.+ ..++.++|.++...|++++
T Consensus 135 ~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~ 214 (336)
T 1p5q_A 135 SWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSA 214 (336)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred hhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHH
Confidence 3366777788899999999999999999999999999999999998 6899999999999999999
Q ss_pred HHHHHHHHHhhccchHHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHH
Q 002379 693 ALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYI 772 (929)
Q Consensus 693 A~~~~~~al~~~p~~~~~~~l~~~l~~~~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~ 772 (929)
|+..|+++++++|++ ..+++++|.++...|++++|+..|+
T Consensus 215 A~~~~~~al~~~p~~----------------------------------------~~a~~~lg~~~~~~g~~~~A~~~~~ 254 (336)
T 1p5q_A 215 AIESCNKALELDSNN----------------------------------------EKGLSRRGEAHLAVNDFELARADFQ 254 (336)
T ss_dssp HHHHHHHHHHHCTTC----------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCc----------------------------------------HHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999999987 5568899999999999999999999
Q ss_pred HHHcC--CCHHHHHHHHHHHHHhCCHHHH-HHHHHHHHHHc
Q 002379 773 NALDI--KHTRAHQGLARVYYLKNELKAA-YDEMTKLLEKA 810 (929)
Q Consensus 773 ~al~~--~~~~a~~~la~~~~~~g~~~~A-~~~~~~al~~~ 810 (929)
+++++ ++..++..++.++...|++++| ...|.+++...
T Consensus 255 ~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 295 (336)
T 1p5q_A 255 KVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFERL 295 (336)
T ss_dssp HHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99998 5678999999999999999988 55677776543
No 151
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.30 E-value=9.2e-11 Score=126.05 Aligned_cols=177 Identities=12% Similarity=0.036 Sum_probs=138.4
Q ss_pred CchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCchhHH
Q 002379 671 SSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQA 750 (929)
Q Consensus 671 p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~l~~~l~~~~~~~~~~~~a~~~~e~Al~~~~~al~~~~a 750 (929)
|.....+...+..+...|++++|+..++++++..+....... ....
T Consensus 72 ~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~----------------------------------~~~~ 117 (293)
T 2qfc_A 72 IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQ----------------------------------FLQW 117 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHH----------------------------------HHHH
T ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHH----------------------------------HHHH
Confidence 344556677888999999999999999999987765410000 0233
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHcC-----CC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH---ccCCHHHHHH
Q 002379 751 LNNLGSIYVECGKLDQAENCYINALDI-----KH---TRAHQGLARVYYLKNELKAAYDEMTKLLEK---AQYSASAFEK 819 (929)
Q Consensus 751 ~~~lg~~~~~~g~~~eA~~~~~~al~~-----~~---~~a~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~ 819 (929)
++.+|.++...|++++|+..|+++++. +. ..++.++|.+|...|++++|+..|+++++. .|++...
T Consensus 118 ~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~--- 194 (293)
T 2qfc_A 118 QYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEF--- 194 (293)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH---
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccc---
Confidence 567889999999999999999999976 11 358999999999999999999999999854 2322111
Q ss_pred HhhhCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-------chHHHHHHHHHHHcCC
Q 002379 820 RSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPD-------LQMLHLRAAFYESIGD 892 (929)
Q Consensus 820 lg~~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~-------~~~~~~la~~~~~~g~ 892 (929)
...+++++|.+|...|++++|+..+++++++.++ ...++.+|.+|..+|+
T Consensus 195 -----------------------~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~ 251 (293)
T 2qfc_A 195 -----------------------DVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEY 251 (293)
T ss_dssp -----------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTC
T ss_pred -----------------------hHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCC
Confidence 1257889999999999999999999999987543 1244578999999999
Q ss_pred HHHH-HHHHHHHhccC
Q 002379 893 LTSA-IRDSQAALCLD 907 (929)
Q Consensus 893 ~~~A-~~~~~~al~l~ 907 (929)
+++| ..+|++|+.+.
T Consensus 252 ~~~Ai~~~~~~Al~~~ 267 (293)
T 2qfc_A 252 EEAEIEDAYKKASFFF 267 (293)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHH
Confidence 9999 88899998763
No 152
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.29 E-value=1.3e-11 Score=121.65 Aligned_cols=132 Identities=14% Similarity=0.064 Sum_probs=91.6
Q ss_pred hCCHHHHHHHHHHHHHHccCCHHHHHHHh----hhCCHHHHHHHHHHHHhcCCCCcHHHHHHHHH-HHhcCCH--HHHHH
Q 002379 793 KNELKAAYDEMTKLLEKAQYSASAFEKRS----EYSDREMAKNDLNMATQLDPLRTYPYRYRAAV-LMDDQKE--VEAVE 865 (929)
Q Consensus 793 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg----~~g~~~~A~~~~~~al~l~p~~~~~~~~la~~-~~~~g~~--~eA~~ 865 (929)
.|++++|+..++++++.+|++..++..+| ..|++++|+..|+++++++|.++.++..+|.+ +...|++ ++|+.
T Consensus 23 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~ 102 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRA 102 (177)
T ss_dssp ----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHH
Confidence 34444555555555555555555554444 33555555555555555566666777788888 7788888 99999
Q ss_pred HHHHHHhcCCCchHHH-HHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHhhh
Q 002379 866 ELSKAIAFKPDLQMLH-LRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNRARDQA 924 (929)
Q Consensus 866 ~l~kal~~~p~~~~~~-~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~l~~~~ 924 (929)
.|+++++.+|++...+ .+|.+|...|++++|+..|+++++++|+++........+....
T Consensus 103 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~i~~~~ 162 (177)
T 2e2e_A 103 MIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVESINMAK 162 (177)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHH
Confidence 9999999998876544 6799999999999999999999999998887777776666543
No 153
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.29 E-value=1.9e-11 Score=112.93 Aligned_cols=100 Identities=26% Similarity=0.222 Sum_probs=80.8
Q ss_pred CCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHH-HHHHHHHHcCCHHHHHHHHHH
Q 002379 824 SDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLH-LRAAFYESIGDLTSAIRDSQA 902 (929)
Q Consensus 824 g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~-~la~~~~~~g~~~~A~~~~~~ 902 (929)
|++++|+..|+++++++|.++.++..+|.++...|++++|+..|+++++++|++...+ .+|.++..+|++++|+..|++
T Consensus 18 ~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 97 (126)
T 3upv_A 18 SDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDA 97 (126)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 3444444444444555566677788889999999999999999999999999887555 779999999999999999999
Q ss_pred HhccC------CCCHHHHHHHHHHHhh
Q 002379 903 ALCLD------PNHMETLDLYNRARDQ 923 (929)
Q Consensus 903 al~l~------P~~~~a~~~~~~l~~~ 923 (929)
+++++ |++..++..+.++...
T Consensus 98 al~~~p~~~~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 98 ARTKDAEVNNGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp HHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred HHHhCcccCCchhHHHHHHHHHHHHHh
Confidence 99999 9999998888887654
No 154
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.28 E-value=1.8e-12 Score=122.77 Aligned_cols=128 Identities=14% Similarity=0.044 Sum_probs=105.1
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHhhhCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCH
Q 002379 781 RAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKE 860 (929)
Q Consensus 781 ~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~ 860 (929)
..+.++|..++..|++++|+..|+++++.+|+++.. .++...|.+..+|.++|.++..+|++
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~------------------~a~~~~~~~a~a~~n~g~al~~Lgr~ 73 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPE------------------EAFDHAGFDAFCHAGLAEALAGLRSF 73 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTT------------------SCCCHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcch------------------hhhhhccchHHHHHHHHHHHHHCCCH
Confidence 567788889999999999999999999998875332 01112233445899999999999999
Q ss_pred HHHHHHHHHHHhc-------CCCchH-H----HHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHhhhhh
Q 002379 861 VEAVEELSKAIAF-------KPDLQM-L----HLRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNRARDQASH 926 (929)
Q Consensus 861 ~eA~~~l~kal~~-------~p~~~~-~----~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~l~~~~~~ 926 (929)
++|+..|++++++ +|++.. | +.+|.++..+|++++|+..|+++++++|++.....-+.++.+....
T Consensus 74 ~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~~~~ 151 (159)
T 2hr2_A 74 DEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVAID 151 (159)
T ss_dssp HHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 9999999999999 999864 4 5779999999999999999999999999998877777777665544
No 155
>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E*
Probab=99.28 E-value=8.8e-12 Score=108.61 Aligned_cols=81 Identities=32% Similarity=0.445 Sum_probs=65.9
Q ss_pred EEEEE-cCeEEEeehhHHhccCHHHHHHhcC--CCCcCCCCeeEecCCCCCHHHHHHHhhhHc-----c---CCCCC--C
Q 002379 220 VTFCV-RDKEISFVRNKIASLSSPFKAMLYG--GFVESKRKTIDFSHDGVSVEGLRAVEVYTR-----T---SRVDL--F 286 (929)
Q Consensus 220 v~~~v-~~~~~~~hr~iLaa~S~~F~~mf~~--~~~e~~~~~i~~~~~~~~~~~~~~~l~~~Y-----t---~~~~~--~ 286 (929)
|+++- +|++|++||.| |..|++|++||.+ ++.|+..+.|.| ++|++.+++.+++|+| + +.++. +
T Consensus 4 v~L~SsDg~~F~v~r~v-A~~S~~ik~m~~~~~~~~E~~~~~I~l--~~V~~~iL~kViey~~~h~~~~~~~~~i~~~~i 80 (97)
T 4ajy_C 4 VKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAENETNEVNF--REIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPI 80 (97)
T ss_dssp EEEECTTCCEEEEEHHH-HTTSHHHHHHHCCC--------CEEEC--TTSCHHHHHHHHHHHHHHHHHTTCCSCCCCCCC
T ss_pred EEEEecCCcEEEecHHH-HHHhHHHHHHHHhCCCccccCCCceEC--CCCCHHHHHHHHHHHHHhcccCCCcCCCCcCcC
Confidence 55554 79999999999 9999999999987 889988899999 9999999999999999 5 55653 7
Q ss_pred ChhHHHHHHHHhchhCh
Q 002379 287 CPGIVLELLSFANRFCC 303 (929)
Q Consensus 287 ~~~~~~~ll~~A~~~~~ 303 (929)
+++++++|+.+||.+++
T Consensus 81 ~~~~l~eLl~AAnyL~~ 97 (97)
T 4ajy_C 81 APEIALELLMAANFLDC 97 (97)
T ss_dssp CGGGHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHhhhCC
Confidence 89999999999999874
No 156
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.27 E-value=1.3e-10 Score=117.95 Aligned_cols=132 Identities=11% Similarity=0.055 Sum_probs=109.8
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHhcccCCHhHHHHHHHHHHHhccHHHHHHHHHHHHhhcCCchhhhccccHHHHHH
Q 002379 516 FPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVK 595 (929)
Q Consensus 516 ~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~ll~ 595 (929)
..++.+|..+...|++++|+..|++++ .+++..+..+|.++...|++++|+..|++++..+|++. .++..+|
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~------~~~~~lg 78 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ--DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLA------VAYFQRG 78 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH------HHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccch------HHHHHHH
Confidence 356778888888888888888888886 55778888888888888889899888888888888887 7777888
Q ss_pred HHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCCh----------------HHHHHHHHHHHHhcCHHHH
Q 002379 596 LLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKS----------------FLRFRQSLLLLRLNCQKAA 659 (929)
Q Consensus 596 ~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~~p~~~----------------~~~~~lg~~~~~~g~~~~A 659 (929)
.++...|++++|...+ +++++..|.+. .+++.+|.++..+|++++|
T Consensus 79 ~~~~~~~~~~~A~~~~------------------~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 140 (213)
T 1hh8_A 79 MLYYQTEKYDLAIKDL------------------KEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKA 140 (213)
T ss_dssp HHHHHTTCHHHHHHHH------------------HHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcccHHHHHHHH------------------HHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHH
Confidence 8888888888885555 88888777766 7888888888888888888
Q ss_pred HHHHHHHHhcCCch
Q 002379 660 MRCLRLARNHSSSE 673 (929)
Q Consensus 660 ~~~l~~al~~~p~~ 673 (929)
+..|+++++.+|++
T Consensus 141 ~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 141 EEQLALATSMKSEP 154 (213)
T ss_dssp HHHHHHHHTTCCSG
T ss_pred HHHHHHHHHcCccc
Confidence 88888888888875
No 157
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.25 E-value=2.6e-11 Score=112.44 Aligned_cols=109 Identities=21% Similarity=0.246 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHhhhCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCH
Q 002379 781 RAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKE 860 (929)
Q Consensus 781 ~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~ 860 (929)
.++.++|.+++..|++++|+..|+++++ ++|.++.+|.++|.+|..+|++
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~------------------------------~~p~~~~~~~nlg~~~~~~~~~ 58 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIE------------------------------LDPSNITFYNNKAAVYFEEKKF 58 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------------------HCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------------------hCCCCHHHHHhHHHHHHHhhhH
Confidence 3556666666666666666666555554 4566667788889999999999
Q ss_pred HHHHHHHHHHHhcCCCch--------HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHH
Q 002379 861 VEAVEELSKAIAFKPDLQ--------MLHLRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNRA 920 (929)
Q Consensus 861 ~eA~~~l~kal~~~p~~~--------~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~l 920 (929)
++|++.++++++++|+.. .++.+|.++..+|++++|++.|+++++.+|+ ++....+..+
T Consensus 59 ~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~~l 125 (127)
T 4gcn_A 59 AECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD-PELVKKVKEL 125 (127)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHHHHHHHh
Confidence 999999999999887653 2346799999999999999999999999885 5555444443
No 158
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.25 E-value=9.8e-11 Score=125.85 Aligned_cols=177 Identities=10% Similarity=-0.034 Sum_probs=143.8
Q ss_pred CCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccC-CH------hHHHHHHHHHHHhccHHHHHHHHHHHHhhcCCchhh
Q 002379 512 PTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SV------DCLELRAWLFIAADDYESALRDTLALLALESNYMMF 584 (929)
Q Consensus 512 P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~------~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 584 (929)
|.....+...+..+...|++++|+..++++++..+ .+ ..+..+|.++...|++++|+..+++++...+.....
T Consensus 72 ~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 151 (293)
T 2qfc_A 72 IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV 151 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCT
T ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCch
Confidence 34445667788899999999999999999987665 22 235667888888999999999999999887665433
Q ss_pred hccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHH---hcCCCCh----HHHHHHHHHHHHhcCHH
Q 002379 585 HGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQML---INDPGKS----FLRFRQSLLLLRLNCQK 657 (929)
Q Consensus 585 ~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al---~~~p~~~----~~~~~lg~~~~~~g~~~ 657 (929)
.....++..+|.++...|++++|..++ ++++ +..|++. .+++++|.+|..+|+++
T Consensus 152 ~~~~~~~~~lg~~y~~~~~~~~A~~~~------------------~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~ 213 (293)
T 2qfc_A 152 YQNLYIENAIANIYAENGYLKKGIDLF------------------EQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYE 213 (293)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHH------------------HHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHH------------------HHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHH
Confidence 333468889999999999999996666 7777 4455533 68999999999999999
Q ss_pred HHHHHHHHHHhcCCc------hHHHHHHHHHHHHHcCCHHHH-HHHHHHHHhhccc
Q 002379 658 AAMRCLRLARNHSSS------EHERLVYEGWILYDTGHREEA-LSRAEKSISIERT 706 (929)
Q Consensus 658 ~A~~~l~~al~~~p~------~~~~~~~lg~~~~~~g~~~eA-~~~~~~al~~~p~ 706 (929)
+|+..+++++++.+. ...++.++|.+|...|++++| ..++++++.+...
T Consensus 214 ~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~ 269 (293)
T 2qfc_A 214 ESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDI 269 (293)
T ss_dssp HHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHH
Confidence 999999999987643 278899999999999999999 8889999987543
No 159
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.23 E-value=1.4e-10 Score=135.83 Aligned_cols=167 Identities=14% Similarity=0.061 Sum_probs=150.5
Q ss_pred HHcCC-HHHHHHHHHHHHcC--CCHHHHHHHHHHHHHhCC----------HHHHHHHHHHHHHHccCCHHHHHHHh----
Q 002379 759 VECGK-LDQAENCYINALDI--KHTRAHQGLARVYYLKNE----------LKAAYDEMTKLLEKAQYSASAFEKRS---- 821 (929)
Q Consensus 759 ~~~g~-~~eA~~~~~~al~~--~~~~a~~~la~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~lg---- 821 (929)
...|+ .++|++.+++++.+ ++..+|+..+.++...|+ ++++++.++++++.+|++..+|..++
T Consensus 39 ~~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~ 118 (567)
T 1dce_A 39 RQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLS 118 (567)
T ss_dssp HHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 34454 46789999999999 566899999999999998 99999999999999999999999999
Q ss_pred hhC--CHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCchH-HHHHHHHHHHc-------
Q 002379 822 EYS--DREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQ-KEVEAVEELSKAIAFKPDLQM-LHLRAAFYESI------- 890 (929)
Q Consensus 822 ~~g--~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g-~~~eA~~~l~kal~~~p~~~~-~~~la~~~~~~------- 890 (929)
.++ +++++++.++++++++|.+..+|.+++.++...| .++++++++.++++.+|++.. |+.++.++..+
T Consensus 119 ~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 119 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp TCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred HcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccc
Confidence 567 7799999999999999999999999999999999 999999999999999998865 55888888875
Q ss_pred -------CCHHHHHHHHHHHhccCCCCHHHHHHHHHHHhhhh
Q 002379 891 -------GDLTSAIRDSQAALCLDPNHMETLDLYNRARDQAS 925 (929)
Q Consensus 891 -------g~~~~A~~~~~~al~l~P~~~~a~~~~~~l~~~~~ 925 (929)
+.+++|++++.+|+.++|++..+|..+.-+-....
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~ 240 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAE 240 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCC
T ss_pred ccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCC
Confidence 56899999999999999999999999888776543
No 160
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.22 E-value=2.1e-10 Score=110.95 Aligned_cols=125 Identities=18% Similarity=0.118 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHh----hhCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhc
Q 002379 782 AHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS----EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDD 857 (929)
Q Consensus 782 a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg----~~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~ 857 (929)
.+..+|.++...|++++|+..+.++++..|++..++..+| ..|++++|+..++++++.+|.++.++..+|.++...
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~ 94 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMAL 94 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHh
Confidence 4444555555555555555555555555555555555544 345555555556666666677777888889999999
Q ss_pred CCHHHHHHHHHHHHhcCCCchHHH---HHHHHHHHcCCHHHHHHHHHHHhcc
Q 002379 858 QKEVEAVEELSKAIAFKPDLQMLH---LRAAFYESIGDLTSAIRDSQAALCL 906 (929)
Q Consensus 858 g~~~eA~~~l~kal~~~p~~~~~~---~la~~~~~~g~~~~A~~~~~~al~l 906 (929)
|++++|+..|+++++.+|++...+ .++..+...|++++|+..++++..+
T Consensus 95 ~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 95 GKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 999999999999999999886544 3355588889999999999887654
No 161
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.21 E-value=3.5e-10 Score=113.52 Aligned_cols=169 Identities=16% Similarity=0.155 Sum_probs=128.3
Q ss_pred HHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHHHHHhcCCCCCChHHH
Q 002379 651 LRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYV 730 (929)
Q Consensus 651 ~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~l~~~l~~~~~~~~~~~~a 730 (929)
...|++++|.+.++......+....++..+|.++...|++++|+..+++++.+.... + .
T Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-------------~----~---- 61 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKS-------------G----D---- 61 (203)
T ss_dssp ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-------------C----C----
T ss_pred cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHc-------------C----C----
Confidence 467999999996666555444678899999999999999999999999999864432 0 0
Q ss_pred HHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC----C-CH----HHHHHHHHHHHHhCCHHHHHH
Q 002379 731 IQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI----K-HT----RAHQGLARVYYLKNELKAAYD 801 (929)
Q Consensus 731 ~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~----~-~~----~a~~~la~~~~~~g~~~~A~~ 801 (929)
.. ....++.++|.++...|++++|+..+++++++ + ++ .++.++|.++...|++++|..
T Consensus 62 --~~-----------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 128 (203)
T 3gw4_A 62 --HT-----------AEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQ 128 (203)
T ss_dssp --HH-----------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred --cH-----------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 00 01356889999999999999999999999987 2 22 468899999999999999999
Q ss_pred HHHHHHHHccCCHHHHHHHhhhCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc
Q 002379 802 EMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDL 877 (929)
Q Consensus 802 ~~~~al~~~p~~~~~~~~lg~~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~ 877 (929)
.+++++...+.....+ ....++..+|.++...|++++|+..+++++++....
T Consensus 129 ~~~~al~~~~~~~~~~------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 180 (203)
T 3gw4_A 129 EYEKSLVYAQQADDQV------------------------AIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAEL 180 (203)
T ss_dssp HHHHHHHHHHHTTCHH------------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhccchH------------------------HHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHc
Confidence 9999987643321111 013456789999999999999999999998765433
No 162
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.21 E-value=1.1e-10 Score=113.12 Aligned_cols=127 Identities=15% Similarity=0.072 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--------cCCHHHHHHHhhhCCHHHHHHHHHHHHhcCCCCcHHHHHHHH
Q 002379 781 RAHQGLARVYYLKNELKAAYDEMTKLLEKA--------QYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAA 852 (929)
Q Consensus 781 ~a~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~lg~~g~~~~A~~~~~~al~l~p~~~~~~~~la~ 852 (929)
..+..+|..++..|++++|+..|++++... |.+... ...+|....++.++|.
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~nla~ 71 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEW--------------------VELDRKNIPLYANMSQ 71 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHH--------------------HHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHH--------------------HHHHHHHHHHHHHHHH
Confidence 456666777777777777777777777662 222211 1234667789999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCchHHH-HHHHHHHHcCCHHHHHHHHHHHhccCCCCH-HHHHHHHHHHhhhhhh
Q 002379 853 VLMDDQKEVEAVEELSKAIAFKPDLQMLH-LRAAFYESIGDLTSAIRDSQAALCLDPNHM-ETLDLYNRARDQASHQ 927 (929)
Q Consensus 853 ~~~~~g~~~eA~~~l~kal~~~p~~~~~~-~la~~~~~~g~~~~A~~~~~~al~l~P~~~-~a~~~~~~l~~~~~~~ 927 (929)
++...|++++|+..++++++++|++...+ .+|.+|..+|++++|+..|+++++++|+++ .+...+..+.....++
T Consensus 72 ~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~ 148 (162)
T 3rkv_A 72 CYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAEK 148 (162)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999997655 779999999999999999999999999999 6677777776655443
No 163
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.21 E-value=1.6e-10 Score=124.11 Aligned_cols=170 Identities=11% Similarity=-0.006 Sum_probs=135.9
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhcccC-CHh------HHHHHHHHHHHhccHHHHHHHHHHHHhhcCCchhhhccccH
Q 002379 518 YKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVD------CLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSG 590 (929)
Q Consensus 518 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~------~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a 590 (929)
+...+..+...|++++|+..+++++...+ .++ .+..+|.++...+++++|+..|++++...+....+...+.+
T Consensus 78 l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 3u3w_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence 33456778889999999999999987655 333 23457888888889999999999999976665544343457
Q ss_pred HHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHh-------cCCCChHHHHHHHHHHHHhcCHHHHHHHH
Q 002379 591 DHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLI-------NDPGKSFLRFRQSLLLLRLNCQKAAMRCL 663 (929)
Q Consensus 591 ~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~-------~~p~~~~~~~~lg~~~~~~g~~~~A~~~l 663 (929)
+..+|.++...|++++|..++ +++++ ..+..+.+++++|.+|..+|++++|+..+
T Consensus 158 ~~~lg~~y~~~g~~~~A~~~~------------------~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~ 219 (293)
T 3u3w_A 158 ENAIANIYAENGYLKKGIDLF------------------EQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQV 219 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHH------------------HHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHH------------------HHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 888999999999999996666 66663 22334568899999999999999999999
Q ss_pred HHHHhcCCch------HHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhcc
Q 002379 664 RLARNHSSSE------HERLVYEGWILYDTGH-REEALSRAEKSISIER 705 (929)
Q Consensus 664 ~~al~~~p~~------~~~~~~lg~~~~~~g~-~~eA~~~~~~al~~~p 705 (929)
++++++.+.. +.++..+|.++..+|+ +++|+..|++++.+..
T Consensus 220 ~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~ 268 (293)
T 3u3w_A 220 NKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFD 268 (293)
T ss_dssp HHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 9999876443 7899999999999995 7999999999998654
No 164
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.21 E-value=7.4e-10 Score=117.27 Aligned_cols=247 Identities=9% Similarity=-0.014 Sum_probs=176.8
Q ss_pred HHHHHhhHHHHhcccHHHHHHHHHHHHhcCccccHH---HHHHHHHHhchHHHHHHHHHhhhccCCCchhhhHHHHHHhh
Q 002379 420 LALHQLGCVMFEREEYKDACYYFEAAADAGHIYSLA---GLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNL 496 (929)
Q Consensus 420 ~~~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~~~a---~la~~~~~~g~a~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 496 (929)
..+|.+ ...|-.|+|..++... -+..+..... -++|++...|+... .. ...|........+-+..
T Consensus 15 ~~lf~i-kn~fy~G~yq~~i~e~---~~~~~~~~~~~~~~~~Rs~iAlg~~~~-------~~-~~~~~~~a~~~la~~~~ 82 (310)
T 3mv2_B 15 MDYFNI-KQNYYTGNFVQCLQEI---EKFSKVTDNTLLFYKAKTLLALGQYQS-------QD-PTSKLGKVLDLYVQFLD 82 (310)
T ss_dssp CCTHHH-HHHHTTTCHHHHTHHH---HTSSCCCCHHHHHHHHHHHHHTTCCCC-------CC-SSSTTHHHHHHHHHHHT
T ss_pred HHHHHH-HHHHHhhHHHHHHHHH---HhcCccchHHHHHHHHHHHHHcCCCcc-------CC-CCCHHHHHHHHHHHHhc
Confidence 344443 3456779999998843 3344444433 34466666665321 01 11222211222222222
Q ss_pred hhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccC---CHhHHHHHHHHHHHhccHHHHHHHHHH
Q 002379 497 GREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL---SVDCLELRAWLFIAADDYESALRDTLA 573 (929)
Q Consensus 497 ~~~Ai~~~~kal~l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~---~~~~~~~~a~~~~~~g~~~~A~~~~~~ 573 (929)
. .|+..+++.++..+....+++.+|.++...|++++|+..+.+.+...+ +.+++...+.+++.+|+.+.|.+.+++
T Consensus 83 ~-~a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~ 161 (310)
T 3mv2_B 83 T-KNIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDN 161 (310)
T ss_dssp T-TCCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred c-cHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 2 388899998888777788888999999999999999999999987764 567788999999999999999999999
Q ss_pred HHhhcCC-----chhhhccccHHHHHHHHHHhhc--ccchHHHHHHhhhccccccccccHHHHHHHHhcCCC--ChHHHH
Q 002379 574 LLALESN-----YMMFHGRVSGDHLVKLLNHHVR--SWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPG--KSFLRF 644 (929)
Q Consensus 574 al~~~p~-----~~~~~~~~~a~~ll~~~~~~~~--~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~~p~--~~~~~~ 644 (929)
+.+.+|+ +.. .....-+.+....| ++..|. ..|+++....|+ .+..++
T Consensus 162 ~~~~~~d~~~~~d~~-----l~~Laea~v~l~~g~~~~q~A~------------------~~f~El~~~~p~~~~~~lLl 218 (310)
T 3mv2_B 162 YTNAIEDTVSGDNEM-----ILNLAESYIKFATNKETATSNF------------------YYYEELSQTFPTWKTQLGLL 218 (310)
T ss_dssp HHHHSCHHHHHHHHH-----HHHHHHHHHHHHHTCSTTTHHH------------------HHHHHHHTTSCSHHHHHHHH
T ss_pred HHhcCccccccchHH-----HHHHHHHHHHHHhCCccHHHHH------------------HHHHHHHHhCCCcccHHHHH
Confidence 9999883 331 11222233344444 777774 444888877776 333444
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHhc----------CCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch
Q 002379 645 RQSLLLLRLNCQKAAMRCLRLARNH----------SSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF 707 (929)
Q Consensus 645 ~lg~~~~~~g~~~~A~~~l~~al~~----------~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~ 707 (929)
+ ++..+|++++|...++.+++. +|+++.++.+++.+....|+ +|.++++++.+.+|++
T Consensus 219 n---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~h 286 (310)
T 3mv2_B 219 N---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEH 286 (310)
T ss_dssp H---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCC
T ss_pred H---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCC
Confidence 4 899999999999999988776 48899999999999999998 8999999999999998
No 165
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.20 E-value=6.4e-11 Score=112.13 Aligned_cols=114 Identities=14% Similarity=0.043 Sum_probs=99.2
Q ss_pred HhHHHHHHHHHHHhccHHHHHHHHHHHHhhcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHH
Q 002379 548 VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLA 627 (929)
Q Consensus 548 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~ 627 (929)
...+..+|..++..|+|++|+..|+++++++|+++.. ++
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~---------------------~a-------------------- 49 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPE---------------------EA-------------------- 49 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTT---------------------SC--------------------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcch---------------------hh--------------------
Confidence 3457788999999999999999999999999997611 01
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-------CCchHHHH----HHHHHHHHHcCCHHHHHHH
Q 002379 628 VINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNH-------SSSEHERL----VYEGWILYDTGHREEALSR 696 (929)
Q Consensus 628 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~-------~p~~~~~~----~~lg~~~~~~g~~~eA~~~ 696 (929)
+...|.++.+|.++|.++..+|++++|+..+++++++ +|+++.+| +++|.++..+|++++|+..
T Consensus 50 -----~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~ 124 (159)
T 2hr2_A 50 -----FDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPE 124 (159)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred -----hhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHH
Confidence 0011334558999999999999999999999999999 99999999 9999999999999999999
Q ss_pred HHHHHhhccch
Q 002379 697 AEKSISIERTF 707 (929)
Q Consensus 697 ~~~al~~~p~~ 707 (929)
|+++++++|++
T Consensus 125 y~kAlel~p~d 135 (159)
T 2hr2_A 125 FKKVVEMIEER 135 (159)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHhcCCCc
Confidence 99999999987
No 166
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.20 E-value=2.1e-10 Score=110.92 Aligned_cols=133 Identities=15% Similarity=0.042 Sum_probs=102.5
Q ss_pred hHHHHHHHHHHHhccHHHHHHHHHHHHhhcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHH
Q 002379 549 DCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAV 628 (929)
Q Consensus 549 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~ 628 (929)
..+..+|..+...|++++|+..|+++++.+|++. .++..+|.++...|++++|..++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~------~~~~~~a~~~~~~~~~~~A~~~~----------------- 70 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNA------IYYGNRSLAYLRTECYGYALGDA----------------- 70 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH------HHHHHHHHHHHHTTCHHHHHHHH-----------------
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCh------HHHHHHHHHHHHcCCHHHHHHHH-----------------
Confidence 3455666777777777777777777777777666 55666777777777777774444
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHH--HHHHHcCCHHHHHHHHHHHHhhcc
Q 002379 629 INQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEG--WILYDTGHREEALSRAEKSISIER 705 (929)
Q Consensus 629 ~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg--~~~~~~g~~~eA~~~~~~al~~~p 705 (929)
.+++..+|.++.+++.+|.++...|++++|+..|+++++.+|.+..++..++ ..+...|++++|+..++++..+.+
T Consensus 71 -~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 148 (166)
T 1a17_A 71 -TRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVD 148 (166)
T ss_dssp -HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHhc
Confidence 6777777777788899999999999999999999999999999988885554 448888999999999988776543
No 167
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.20 E-value=1.4e-09 Score=115.18 Aligned_cols=144 Identities=10% Similarity=0.042 Sum_probs=101.9
Q ss_pred HHHHHhCCHHHHHHHHHHHhcccC--CHhHHHHHHHHHHHhccHHHHHHHHHHHHhhcCCchhhhccccHHHHHHHHHHh
Q 002379 523 VAKMEEGQIRAAISEIDRIIVFKL--SVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHH 600 (929)
Q Consensus 523 ~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~ll~~~~~~ 600 (929)
.-.+-.|+|..++....+. .+ .......+...++.+|++.... ...+.. .+..+++....
T Consensus 21 kn~fy~G~yq~~i~e~~~~---~~~~~~~~~~~~~Rs~iAlg~~~~~~----------~~~~~~----~a~~~la~~~~- 82 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEIEKF---SKVTDNTLLFYKAKTLLALGQYQSQD----------PTSKLG----KVLDLYVQFLD- 82 (310)
T ss_dssp HHHHTTTCHHHHTHHHHTS---SCCCCHHHHHHHHHHHHHTTCCCCCC----------SSSTTH----HHHHHHHHHHT-
T ss_pred HHHHHhhHHHHHHHHHHhc---CccchHHHHHHHHHHHHHcCCCccCC----------CCCHHH----HHHHHHHHHhc-
Confidence 3456788888888855443 33 3334556677778888776421 111100 11111111111
Q ss_pred hcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC--chHHHHH
Q 002379 601 VRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSS--SEHERLV 678 (929)
Q Consensus 601 ~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p--~~~~~~~ 678 (929)
..| +..+++.+...+.....+..+|.++...|++++|++.+.+.+..+| .+.+++.
T Consensus 83 ----~~a------------------~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~ 140 (310)
T 3mv2_B 83 ----TKN------------------IEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLL 140 (310)
T ss_dssp ----TTC------------------CHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHH
T ss_pred ----ccH------------------HHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHH
Confidence 112 4455777776666677788999999999999999999999999987 8899999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhccc
Q 002379 679 YEGWILYDTGHREEALSRAEKSISIERT 706 (929)
Q Consensus 679 ~lg~~~~~~g~~~eA~~~~~~al~~~p~ 706 (929)
..+.++...|+.+.|.+.++++.+.+|+
T Consensus 141 l~vqi~L~~~r~d~A~k~l~~~~~~~~d 168 (310)
T 3mv2_B 141 LAIEVALLNNNVSTASTIFDNYTNAIED 168 (310)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCcc
Confidence 9999999999999999999999999883
No 168
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.19 E-value=4.2e-11 Score=120.46 Aligned_cols=160 Identities=13% Similarity=0.033 Sum_probs=97.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHhhhCCHHHH
Q 002379 752 NNLGSIYVECGKLDQAENCYINALDI--KHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMA 829 (929)
Q Consensus 752 ~~lg~~~~~~g~~~eA~~~~~~al~~--~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~g~~~~A 829 (929)
...+......|++++|.+.++..... .....+..+|..+...|++++|+..|++++...|+++..... .
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~---------~ 78 (198)
T 2fbn_A 8 HHHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQ---------I 78 (198)
T ss_dssp --------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCH---------H
T ss_pred cchhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchh---------h
Confidence 34455556667777776666544333 344578888888888888888888888888887766411000 0
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHH-HHHHHHHHcCCHHHHHHHHHHHhccCC
Q 002379 830 KNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLH-LRAAFYESIGDLTSAIRDSQAALCLDP 908 (929)
Q Consensus 830 ~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~-~la~~~~~~g~~~~A~~~~~~al~l~P 908 (929)
.......+ ...++.++|.++...|++++|+..++++++++|++...+ .+|.+|..+|++++|+..|+++++++|
T Consensus 79 ~~~~~~~~-----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 153 (198)
T 2fbn_A 79 LLDKKKNI-----EISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNP 153 (198)
T ss_dssp HHHHHHHH-----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHH-----HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC
Confidence 00000000 135667777777777777777777777777777765444 567777777777777777777777777
Q ss_pred CCHHHHHHHHHHHhhhh
Q 002379 909 NHMETLDLYNRARDQAS 925 (929)
Q Consensus 909 ~~~~a~~~~~~l~~~~~ 925 (929)
+++.++..++.+.....
T Consensus 154 ~~~~~~~~l~~~~~~~~ 170 (198)
T 2fbn_A 154 NNLDIRNSYELCVNKLK 170 (198)
T ss_dssp TCHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHH
Confidence 77777777777665543
No 169
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.19 E-value=1.7e-10 Score=106.80 Aligned_cols=120 Identities=16% Similarity=0.149 Sum_probs=108.0
Q ss_pred CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHH
Q 002379 636 DPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAY 715 (929)
Q Consensus 636 ~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~l~~ 715 (929)
.|..+.+++.+|..+...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..++++++.+|++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~-------- 83 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTF-------- 83 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTC--------
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc--------
Confidence 467788999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred HHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHh
Q 002379 716 ILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLK 793 (929)
Q Consensus 716 ~l~~~~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~--~~~a~~~la~~~~~~ 793 (929)
..++..+|.++...|++++|+..|+++++.. +..++..++.++...
T Consensus 84 --------------------------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 131 (133)
T 2lni_A 84 --------------------------------IKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQ 131 (133)
T ss_dssp --------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHH
T ss_pred --------------------------------hHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHh
Confidence 4557888999999999999999999999883 457888999988877
Q ss_pred CC
Q 002379 794 NE 795 (929)
Q Consensus 794 g~ 795 (929)
|+
T Consensus 132 ~~ 133 (133)
T 2lni_A 132 YN 133 (133)
T ss_dssp TC
T ss_pred cC
Confidence 64
No 170
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.19 E-value=9.3e-11 Score=113.94 Aligned_cols=105 Identities=15% Similarity=0.070 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHhhhCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCC
Q 002379 780 TRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQK 859 (929)
Q Consensus 780 ~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~ 859 (929)
...++.+|.++...|++++|+..|+++++.+|++ +.++..+|.++...|+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------------------------------~~~~~~l~~~~~~~g~ 60 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPAN------------------------------PIYLSNRAAAYSASGQ 60 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC------------------------------HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcC------------------------------HHHHHHHHHHHHHccC
Confidence 3566777777777777777777766666665554 4555666666666777
Q ss_pred HHHHHHHHHHHHhcCCCchHHH-HHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHH
Q 002379 860 EVEAVEELSKAIAFKPDLQMLH-LRAAFYESIGDLTSAIRDSQAALCLDPNHMETL 914 (929)
Q Consensus 860 ~~eA~~~l~kal~~~p~~~~~~-~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~ 914 (929)
+++|+..|+++++++|++...+ .+|.+|..+|++++|+..|+++++++|++..++
T Consensus 61 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 116 (164)
T 3sz7_A 61 HEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDA 116 (164)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHH
Confidence 7777777777777666665433 556677777777777777777777766666633
No 171
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.19 E-value=1.6e-10 Score=112.27 Aligned_cols=113 Identities=12% Similarity=0.076 Sum_probs=87.1
Q ss_pred CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHH
Q 002379 636 DPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAY 715 (929)
Q Consensus 636 ~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~l~~ 715 (929)
++.++..++.+|.++...|++++|+..|+++++.+|+++.++..+|.+|...|++++|+..|+++++++|++
T Consensus 7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-------- 78 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKY-------- 78 (164)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--------
T ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC--------
Confidence 345667788888888888888888888888888888888888888888888888888888888888888876
Q ss_pred HHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC--CCHHHHHHHHH
Q 002379 716 ILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI--KHTRAHQGLAR 788 (929)
Q Consensus 716 ~l~~~~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~--~~~~a~~~la~ 788 (929)
..+++++|.++...|++++|+.+|++++++ ++..++...+.
T Consensus 79 --------------------------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 121 (164)
T 3sz7_A 79 --------------------------------SKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGL 121 (164)
T ss_dssp --------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHH
T ss_pred --------------------------------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 445677777777777777777777777776 33344444433
No 172
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.18 E-value=4.4e-10 Score=120.66 Aligned_cols=173 Identities=12% Similarity=0.044 Sum_probs=133.9
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHhhcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHH
Q 002379 553 LRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQM 632 (929)
Q Consensus 553 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~a 632 (929)
..+..+...|++++|+..+++++...+..+........+..++..+...+++++|...+ +++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~------------------~~a 141 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILEL------------------KKL 141 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHH------------------HHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHH------------------HHH
Confidence 34677788999999999999999987776632221133445788888888889996655 888
Q ss_pred HhcCCCC------hHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-------CCchHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002379 633 LINDPGK------SFLRFRQSLLLLRLNCQKAAMRCLRLARNH-------SSSEHERLVYEGWILYDTGHREEALSRAEK 699 (929)
Q Consensus 633 l~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~l~~al~~-------~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~ 699 (929)
+...+.. ..++..+|.+|..+|++++|+.+|+++++. .+....++.++|.+|...|++++|+.++++
T Consensus 142 l~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~ 221 (293)
T 3u3w_A 142 LNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNK 221 (293)
T ss_dssp HHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 8864432 236899999999999999999999999942 233356889999999999999999999999
Q ss_pred HHhhccchHHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCC-HHHHHHHHHHHHcC
Q 002379 700 SISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGK-LDQAENCYINALDI 777 (929)
Q Consensus 700 al~~~p~~~~~~~l~~~l~~~~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~-~~eA~~~~~~al~~ 777 (929)
++++.+... .....+.+++++|.++...|+ +++|+.+|++|+.+
T Consensus 222 al~~~~~~~----------------------------------~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 222 AIEISCRIN----------------------------------SMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHTT----------------------------------BCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcC----------------------------------cHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 998766440 001124668899999999994 69999999998875
No 173
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.18 E-value=9.7e-11 Score=115.27 Aligned_cols=124 Identities=10% Similarity=-0.015 Sum_probs=87.7
Q ss_pred HhccHHHHHHHHHHHHhhcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCC
Q 002379 560 AADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGK 639 (929)
Q Consensus 560 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~~p~~ 639 (929)
..|++++|+..++++++.+|++. .++..+|.++...|++++|...+ .+++..+|++
T Consensus 22 ~~~~~~~A~~~~~~al~~~p~~~------~~~~~lg~~~~~~~~~~~A~~~~------------------~~al~~~p~~ 77 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANPQNS------EQWALLGEYYLWQNDYSNSLLAY------------------RQALQLRGEN 77 (177)
T ss_dssp -----CCCCHHHHHHHHHCCSCH------HHHHHHHHHHHHTTCHHHHHHHH------------------HHHHHHHCSC
T ss_pred hccCHHHHHHHHHHHHHhCCCcH------HHHHHHHHHHHHcCCHHHHHHHH------------------HHHHHcCCCC
Confidence 34566666666666666666665 55555666666666666664444 6666666666
Q ss_pred hHHHHHHHHH-HHHhcCH--HHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch
Q 002379 640 SFLRFRQSLL-LLRLNCQ--KAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF 707 (929)
Q Consensus 640 ~~~~~~lg~~-~~~~g~~--~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~ 707 (929)
+.++..+|.+ +...|++ ++|+..++++++.+|+++.++..+|.++...|++++|+..|+++++++|++
T Consensus 78 ~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 148 (177)
T 2e2e_A 78 AELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPR 148 (177)
T ss_dssp HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT
T ss_pred HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC
Confidence 6777778887 6777887 888888888888888888888888888888888888888888888888876
No 174
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.18 E-value=2.8e-10 Score=104.95 Aligned_cols=110 Identities=12% Similarity=-0.011 Sum_probs=99.3
Q ss_pred cHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 002379 589 SGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARN 668 (929)
Q Consensus 589 ~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~ 668 (929)
..+..+|..+...|++++|...+ .++++.+|+++.++..+|.++..+|++++|+..++++++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~------------------~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 66 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAY------------------TEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIE 66 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHH------------------HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHH------------------HHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 56677888999999999995555 999999999999999999999999999999999999999
Q ss_pred cCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc------cch-HHHHHHHHH
Q 002379 669 HSSSEHERLVYEGWILYDTGHREEALSRAEKSISIE------RTF-EAFFLKAYI 716 (929)
Q Consensus 669 ~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~------p~~-~~~~~l~~~ 716 (929)
++|+++.+++.+|.++...|++++|+..|+++++++ |++ ..+..+..+
T Consensus 67 ~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~ 121 (126)
T 3upv_A 67 KDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 121 (126)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred hCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHH
Confidence 999999999999999999999999999999999999 766 555544444
No 175
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.16 E-value=2e-10 Score=105.67 Aligned_cols=122 Identities=15% Similarity=0.139 Sum_probs=108.6
Q ss_pred cCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHH
Q 002379 635 NDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKA 714 (929)
Q Consensus 635 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~l~ 714 (929)
.+|.++..+..+|..+...|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++...|++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~------- 79 (131)
T 2vyi_A 7 EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAY------- 79 (131)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------
T ss_pred cchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccC-------
Confidence 3456678899999999999999999999999999999999999999999999999999999999999988876
Q ss_pred HHHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHH
Q 002379 715 YILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI--KHTRAHQGLARVYYL 792 (929)
Q Consensus 715 ~~l~~~~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~--~~~~a~~~la~~~~~ 792 (929)
..++..+|.++...|++++|+..|+++++. +++.++..+|.++..
T Consensus 80 ---------------------------------~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 126 (131)
T 2vyi_A 80 ---------------------------------SKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELK 126 (131)
T ss_dssp ---------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred ---------------------------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHH
Confidence 445788899999999999999999999988 456788999999888
Q ss_pred hCCH
Q 002379 793 KNEL 796 (929)
Q Consensus 793 ~g~~ 796 (929)
.|++
T Consensus 127 ~~~~ 130 (131)
T 2vyi_A 127 LREA 130 (131)
T ss_dssp HTTC
T ss_pred HhcC
Confidence 8764
No 176
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.15 E-value=2.6e-10 Score=106.66 Aligned_cols=103 Identities=17% Similarity=0.116 Sum_probs=81.5
Q ss_pred hCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHH-HHHHHHHHcCCHHHHHHHHH
Q 002379 823 YSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLH-LRAAFYESIGDLTSAIRDSQ 901 (929)
Q Consensus 823 ~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~-~la~~~~~~g~~~~A~~~~~ 901 (929)
.|++++|+..|++++..+|.++.++..+|.++...|++++|+..++++++++|++...+ .+|.++..+|++++|+..|+
T Consensus 22 ~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~ 101 (137)
T 3q49_B 22 GRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQ 101 (137)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 34445555555555555666677788889999999999999999999999999886554 77999999999999999999
Q ss_pred HHhccCCC-----CHHHHHHHHHHHhhhh
Q 002379 902 AALCLDPN-----HMETLDLYNRARDQAS 925 (929)
Q Consensus 902 ~al~l~P~-----~~~a~~~~~~l~~~~~ 925 (929)
++++++|+ +..+...+.++.....
T Consensus 102 ~a~~~~p~~~~~~~~~~~~~l~~~~~~~~ 130 (137)
T 3q49_B 102 RAYSLAKEQRLNFGDDIPSALRIAKKKRW 130 (137)
T ss_dssp HHHHHHHHTTCCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHChhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888 7888888877766543
No 177
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.13 E-value=5.8e-10 Score=104.18 Aligned_cols=103 Identities=15% Similarity=0.051 Sum_probs=92.2
Q ss_pred cCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHH
Q 002379 635 NDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKA 714 (929)
Q Consensus 635 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~l~ 714 (929)
.+|.++..++.+|..+...|++++|+..|++++..+|+++.++..+|.++...|++++|+..++++++++|++
T Consensus 4 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~------- 76 (137)
T 3q49_B 4 MKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQS------- 76 (137)
T ss_dssp --CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------
T ss_pred CccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchh-------
Confidence 4577889999999999999999999999999999999999999999999999999999999999999998877
Q ss_pred HHHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC
Q 002379 715 YILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI 777 (929)
Q Consensus 715 ~~l~~~~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~ 777 (929)
..+++.+|.++...|++++|+..|++++++
T Consensus 77 ---------------------------------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 77 ---------------------------------VKAHFFLGQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp ---------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ---------------------------------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 455788888888889999999999888877
No 178
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.13 E-value=5.6e-11 Score=119.53 Aligned_cols=155 Identities=10% Similarity=-0.031 Sum_probs=77.6
Q ss_pred HHHHHHHhCCHHHHHHHHHHHhcccC-CHhHHHHHHHHHHHhccHHHHHHHHHHHHhhcCCchhhhcc----------cc
Q 002379 521 RAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGR----------VS 589 (929)
Q Consensus 521 ~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~----------~~ 589 (929)
.+......|+++.|...++......+ ....+..+|..++..|++++|+..|++++...|+++.+... ..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 89 (198)
T 2fbn_A 10 HSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEIS 89 (198)
T ss_dssp ------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHH
Confidence 34455566667766666654443222 34557888999999999999999999999988887632110 12
Q ss_pred HHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 002379 590 GDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNH 669 (929)
Q Consensus 590 a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~ 669 (929)
++..++.++...|++++|..++ .+++..+|.++.+++.+|.++..+|++++|+..|++++++
T Consensus 90 ~~~~la~~~~~~~~~~~A~~~~------------------~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 90 CNLNLATCYNKNKDYPKAIDHA------------------SKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHH------------------HHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHH------------------HHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 3333444444444444443322 4444444444444444444444444444444444444444
Q ss_pred CCchHHHHHHHHHHHHHcCCHHHH
Q 002379 670 SSSEHERLVYEGWILYDTGHREEA 693 (929)
Q Consensus 670 ~p~~~~~~~~lg~~~~~~g~~~eA 693 (929)
+|+++.++..++.++...++..++
T Consensus 152 ~p~~~~~~~~l~~~~~~~~~~~~~ 175 (198)
T 2fbn_A 152 NPNNLDIRNSYELCVNKLKEARKK 175 (198)
T ss_dssp STTCHHHHHHHHHHHHHHHHHHC-
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444333
No 179
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D
Probab=99.13 E-value=1.7e-10 Score=107.95 Aligned_cols=96 Identities=15% Similarity=0.118 Sum_probs=84.8
Q ss_pred EEEEE-cCeEEEeehhHHhccCHHHHHHhcCCCCcCCCCeeEecCCCCCHHHHHHHhhhHccCC----------------
Q 002379 220 VTFCV-RDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSR---------------- 282 (929)
Q Consensus 220 v~~~v-~~~~~~~hr~iLaa~S~~F~~mf~~~~~e~~~~~i~~~~~~~~~~~~~~~l~~~Yt~~---------------- 282 (929)
|+++. +|+.|.+||.+ |..|++|++||.+.- .+.|.| ++|+..+++.|++|+|+..
T Consensus 4 v~L~SsDg~~f~v~~~v-A~~S~~ik~ml~~~~----~~~Ipl--~~V~~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~ 76 (141)
T 1fs1_B 4 IKLQSSDGEIFEVDVEI-AKQSVTIKTMLEDLG----MDPVPL--PNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRT 76 (141)
T ss_dssp EEEECTTSCEEEEEGGG-GGTCHHHHHHHHHTC----CSSEEC--TTCCHHHHHHHHHHHHHHTTCC-------------
T ss_pred EEEEeCCCCEEEecHHH-HHHhHHHHHHHHhcC----CCceec--CCcCHHHHHHHHHHHHHhccCCCccccccccccch
Confidence 67776 88999999998 899999999998631 457999 9999999999999999876
Q ss_pred ----------CCCCChhHHHHHHHHhchhChHhHHHHHHHHHHhhcCChhhH
Q 002379 283 ----------VDLFCPGIVLELLSFANRFCCEEMKSACDAHLASLVGDIEDA 324 (929)
Q Consensus 283 ----------~~~~~~~~~~~ll~~A~~~~~~~l~~~C~~~l~~~~~~~~n~ 324 (929)
+. ++.+++.+|+.+||.+++..|.+.|++++++.+. -.+.
T Consensus 77 ~~i~~wD~~F~~-vd~~~l~eLi~AAnyL~I~~Lldl~c~~vA~~ik-gkt~ 126 (141)
T 1fs1_B 77 DDIPVWDQEFLK-VDQGTLFELILAANYLDIKGLLDVTCKTVANMIK-GKTP 126 (141)
T ss_dssp ----HHHHHHTC-SCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT-TCCH
T ss_pred hhhhHHHHHHHh-CCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-CCCH
Confidence 55 8899999999999999999999999999999997 3443
No 180
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.12 E-value=2.2e-10 Score=105.09 Aligned_cols=90 Identities=18% Similarity=0.155 Sum_probs=65.6
Q ss_pred hCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHH-HHHHHHHHcCCHHHHHHHHH
Q 002379 823 YSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLH-LRAAFYESIGDLTSAIRDSQ 901 (929)
Q Consensus 823 ~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~-~la~~~~~~g~~~~A~~~~~ 901 (929)
.|++++|+..|+++++.+|.++.+|+.+|.++...|++++|+..|+++++++|++...+ .+|.+|...|++++|+..|+
T Consensus 30 ~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~ 109 (121)
T 1hxi_A 30 LANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLR 109 (121)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34445555555555555666777788888899999999999999999999999886554 77999999999999999999
Q ss_pred HHhccCCCCHH
Q 002379 902 AALCLDPNHME 912 (929)
Q Consensus 902 ~al~l~P~~~~ 912 (929)
++++++|++..
T Consensus 110 ~al~~~P~~~~ 120 (121)
T 1hxi_A 110 AWLLSQPQYEQ 120 (121)
T ss_dssp HHHC-------
T ss_pred HHHHhCcCCCC
Confidence 99999988754
No 181
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.12 E-value=8.7e-10 Score=99.33 Aligned_cols=113 Identities=17% Similarity=0.149 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHhhhCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCC
Q 002379 780 TRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQK 859 (929)
Q Consensus 780 ~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~ 859 (929)
...++.+|..+...|++++|+..+++++.. +|.++.++..+|.++...|+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~------------------------------~~~~~~~~~~~a~~~~~~~~ 53 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKL------------------------------DPHNHVLYSNRSAAYAKKGD 53 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------------------CTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHH------------------------------CCCcHHHHHHHHHHHHhhcc
Confidence 345666666666666666666665555554 55566677888999999999
Q ss_pred HHHHHHHHHHHHhcCCCchHHH-HHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHh
Q 002379 860 EVEAVEELSKAIAFKPDLQMLH-LRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNRARD 922 (929)
Q Consensus 860 ~~eA~~~l~kal~~~p~~~~~~-~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~l~~ 922 (929)
+++|+..++++++..|++...+ .+|.++...|++++|+..|+++++++|+++.++..++.+..
T Consensus 54 ~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 117 (118)
T 1elw_A 54 YQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA 117 (118)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhhc
Confidence 9999999999999999886554 77999999999999999999999999999999998888764
No 182
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.12 E-value=1.1e-10 Score=133.76 Aligned_cols=133 Identities=8% Similarity=0.033 Sum_probs=118.9
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCch---------------HHHHHHHHHHHHHcCCHHHHH
Q 002379 630 NQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE---------------HERLVYEGWILYDTGHREEAL 694 (929)
Q Consensus 630 ~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~---------------~~~~~~lg~~~~~~g~~~eA~ 694 (929)
..++..+|..+..+..+|..+...|++++|+..|+++++++|.+ ..++.++|.+|..+|++++|+
T Consensus 258 ~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~ 337 (457)
T 1kt0_A 258 EMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAV 337 (457)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred hcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 56666678889999999999999999999999999999999988 689999999999999999999
Q ss_pred HHHHHHHhhccchHHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002379 695 SRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINA 774 (929)
Q Consensus 695 ~~~~~al~~~p~~~~~~~l~~~l~~~~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~a 774 (929)
..|+++++++|++ ..+++++|.+|..+|++++|+..|+++
T Consensus 338 ~~~~~al~~~p~~----------------------------------------~~a~~~~g~a~~~~g~~~~A~~~~~~a 377 (457)
T 1kt0_A 338 ECCDKALGLDSAN----------------------------------------EKGLYRRGEAQLLMNEFESAKGDFEKV 377 (457)
T ss_dssp HHHHHHHHHSTTC----------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhcCCcc----------------------------------------HHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 9999999999987 556888999999999999999999999
Q ss_pred HcCC--CHHHHHHHHHHHHHhCCHHHHHHH
Q 002379 775 LDIK--HTRAHQGLARVYYLKNELKAAYDE 802 (929)
Q Consensus 775 l~~~--~~~a~~~la~~~~~~g~~~~A~~~ 802 (929)
++++ +..++..++.++...+++++|...
T Consensus 378 l~l~P~~~~a~~~l~~~~~~~~~~~~a~~~ 407 (457)
T 1kt0_A 378 LEVNPQNKAARLQISMCQKKAKEHNERDRR 407 (457)
T ss_dssp HTTC----CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9994 456899999999999998877643
No 183
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.11 E-value=1.7e-09 Score=98.47 Aligned_cols=119 Identities=22% Similarity=0.317 Sum_probs=98.0
Q ss_pred CCCC-hHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHH
Q 002379 636 DPGK-SFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKA 714 (929)
Q Consensus 636 ~p~~-~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~l~ 714 (929)
+|.. +..++.+|.++...|++++|+..++++++..|.++.++..+|.++...|++++|+..+++++...|++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~------- 76 (125)
T 1na0_A 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN------- 76 (125)
T ss_dssp ---CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------
T ss_pred CccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc-------
Confidence 4544 67888999999999999999999999999999999999999999999999999999999999887765
Q ss_pred HHHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHH
Q 002379 715 YILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI--KHTRAHQGLARVYYL 792 (929)
Q Consensus 715 ~~l~~~~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~--~~~~a~~~la~~~~~ 792 (929)
..++..+|.++...|++++|+..|+++++. .++.++..++.++..
T Consensus 77 ---------------------------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 77 ---------------------------------AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK 123 (125)
T ss_dssp ---------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred ---------------------------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence 344677888888888888888888888877 456778888877765
Q ss_pred hC
Q 002379 793 KN 794 (929)
Q Consensus 793 ~g 794 (929)
.|
T Consensus 124 ~g 125 (125)
T 1na0_A 124 QG 125 (125)
T ss_dssp HC
T ss_pred cc
Confidence 54
No 184
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.10 E-value=1.2e-09 Score=109.40 Aligned_cols=145 Identities=16% Similarity=0.147 Sum_probs=119.6
Q ss_pred cCC-CChHHHHHHHHHHHHhcCHHHHHHHHHHHHh------cCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch
Q 002379 635 NDP-GKSFLRFRQSLLLLRLNCQKAAMRCLRLARN------HSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF 707 (929)
Q Consensus 635 ~~p-~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~------~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~ 707 (929)
.+| ..+.++..+|.++...|++++|+..++++++ ..+....++..+|.++...|++++|+..+++++++.+..
T Consensus 20 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 99 (203)
T 3gw4_A 20 AHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASL 99 (203)
T ss_dssp TSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred CChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Confidence 344 6678999999999999999999999999998 455667889999999999999999999999999873321
Q ss_pred HHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC----CCH---
Q 002379 708 EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI----KHT--- 780 (929)
Q Consensus 708 ~~~~~l~~~l~~~~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~----~~~--- 780 (929)
+ .. .. ....++.++|.++...|++++|+.++++++.+ +++
T Consensus 100 -------------~---~~------~~-----------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 146 (203)
T 3gw4_A 100 -------------P---ED------PL-----------AASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAI 146 (203)
T ss_dssp -------------C---CC------HH-----------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred -------------C---cc------HH-----------HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHH
Confidence 0 00 00 01345889999999999999999999999976 222
Q ss_pred -HHHHHHHHHHHHhCCHHHHHHHHHHHHHHccC
Q 002379 781 -RAHQGLARVYYLKNELKAAYDEMTKLLEKAQY 812 (929)
Q Consensus 781 -~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 812 (929)
.++..+|.++...|++++|...++++++....
T Consensus 147 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 179 (203)
T 3gw4_A 147 ACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAE 179 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 35789999999999999999999999987554
No 185
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.09 E-value=8.3e-10 Score=102.08 Aligned_cols=50 Identities=16% Similarity=-0.112 Sum_probs=27.1
Q ss_pred ChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcC
Q 002379 639 KSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTG 688 (929)
Q Consensus 639 ~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g 688 (929)
++.+++.+|.++...|++++|+..|+++++.+|.+..++..++.++...|
T Consensus 83 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 83 FIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 33444455555555555555555555555555555555555555555444
No 186
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.09 E-value=8.9e-10 Score=101.69 Aligned_cols=119 Identities=12% Similarity=-0.043 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHhhhCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHH
Q 002379 782 AHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEV 861 (929)
Q Consensus 782 a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~ 861 (929)
+++.+|.++...|++++|+..++++++..|++.. .+.+++.+|.++...|+++
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~---------------------------~~~~~~~lg~~~~~~~~~~ 56 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVY---------------------------TPNALYWLGESYYATRNFQ 56 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTT---------------------------HHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcc---------------------------cHHHHHHHHHHHHHhccHH
Confidence 4566777777777777777777666666554321 1267888999999999999
Q ss_pred HHHHHHHHHHhcCCCc---hH-HHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHhhhhhh
Q 002379 862 EAVEELSKAIAFKPDL---QM-LHLRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNRARDQASHQ 927 (929)
Q Consensus 862 eA~~~l~kal~~~p~~---~~-~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~l~~~~~~~ 927 (929)
+|+..|+++++..|++ +. ++.+|.++..+|++++|+..|+++++.+|+++.+.....++.....+.
T Consensus 57 ~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l~~~~ 126 (129)
T 2xev_A 57 LAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSIRLGQ 126 (129)
T ss_dssp HHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhhh
Confidence 9999999999999987 44 447799999999999999999999999999999999999888776543
No 187
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.09 E-value=4.2e-10 Score=103.24 Aligned_cols=96 Identities=17% Similarity=0.091 Sum_probs=66.5
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHh----hhCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcC
Q 002379 783 HQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS----EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQ 858 (929)
Q Consensus 783 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg----~~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g 858 (929)
++.+|..+...|++++|+..++++++.+|+++.+|..+| ..|++++|+..|+++++++|+++.++..+|.++...|
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 99 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 455566666666666666666666666666666666666 4566666666677777777778888888999999999
Q ss_pred CHHHHHHHHHHHHhcCCCch
Q 002379 859 KEVEAVEELSKAIAFKPDLQ 878 (929)
Q Consensus 859 ~~~eA~~~l~kal~~~p~~~ 878 (929)
++++|+..|+++++.+|++.
T Consensus 100 ~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 100 NANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHC------
T ss_pred CHHHHHHHHHHHHHhCcCCC
Confidence 99999999999999988764
No 188
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.09 E-value=1.1e-09 Score=103.38 Aligned_cols=100 Identities=24% Similarity=0.159 Sum_probs=82.1
Q ss_pred CCHHHHHHHHHHHHhcCCCC---cHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHH-HHHHHHHHcCCHHHHHHH
Q 002379 824 SDREMAKNDLNMATQLDPLR---TYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLH-LRAAFYESIGDLTSAIRD 899 (929)
Q Consensus 824 g~~~~A~~~~~~al~l~p~~---~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~-~la~~~~~~g~~~~A~~~ 899 (929)
|++++|+..|+++++.+|.+ ..++..+|.++...|++++|+..++++++.+|++...+ .+|.++...|++++|+..
T Consensus 42 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~ 121 (148)
T 2dba_A 42 GDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLD 121 (148)
T ss_dssp TCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 33344444444444444544 67788999999999999999999999999999886554 779999999999999999
Q ss_pred HHHHhccCCCCHHHHHHHHHHHhh
Q 002379 900 SQAALCLDPNHMETLDLYNRARDQ 923 (929)
Q Consensus 900 ~~~al~l~P~~~~a~~~~~~l~~~ 923 (929)
|+++++++|++..++..+.++...
T Consensus 122 ~~~al~~~p~~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 122 LQRCVSLEPKNKVFQEALRNISGP 145 (148)
T ss_dssp HHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred HHHHHHcCCCcHHHHHHHHHHHhh
Confidence 999999999999999999888654
No 189
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.09 E-value=1.2e-09 Score=100.31 Aligned_cols=116 Identities=13% Similarity=-0.026 Sum_probs=63.5
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHH
Q 002379 551 LELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVIN 630 (929)
Q Consensus 551 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~ 630 (929)
+..+|..+...|++++|+..|++++...|++. .++..++.++...|++++|...+ .
T Consensus 15 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~~a~~~~~~~~~~~A~~~~------------------~ 70 (131)
T 2vyi_A 15 LKTEGNEQMKVENFEAAVHFYGKAIELNPANA------VYFCNRAAAYSKLGNYAGAVQDC------------------E 70 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHHTTCHHHHHHHH------------------H
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHcCCCCH------HHHHHHHHHHHHhhchHHHHHHH------------------H
Confidence 44444444444444444444444444444443 33333444444444444442222 4
Q ss_pred HHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCH
Q 002379 631 QMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHR 690 (929)
Q Consensus 631 ~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~ 690 (929)
+++..+|+++.+++.+|.++...|++++|+..++++++.+|+++.++..+|.++...|++
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 71 RAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHhcCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 444444444555666667777777777777777777777777777777777777666654
No 190
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.08 E-value=1.8e-09 Score=122.52 Aligned_cols=211 Identities=8% Similarity=-0.077 Sum_probs=156.5
Q ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHhcccCCH------------------hHHHHHHHHHHHhccHHHHHHHHHHHHh
Q 002379 515 SFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSV------------------DCLELRAWLFIAADDYESALRDTLALLA 576 (929)
Q Consensus 515 ~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~------------------~~~~~~a~~~~~~g~~~~A~~~~~~al~ 576 (929)
|.+.+..|..+...|+|++|+..|.++++..+.. .++..+|.+|...|++++|+..+.+++.
T Consensus 4 p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~ 83 (434)
T 4b4t_Q 4 PGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTE 83 (434)
T ss_dssp TTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4455666777778888888888888877655511 2367788888999999999999998888
Q ss_pred hcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhc------CCCChHHHHHHHHHH
Q 002379 577 LESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLIN------DPGKSFLRFRQSLLL 650 (929)
Q Consensus 577 ~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~------~p~~~~~~~~lg~~~ 650 (929)
..+..............++.++...|.+++|.... .+++.. .+....++..+|.+|
T Consensus 84 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~------------------~~~~~~~~~~~~~~~~~~~~~~la~~~ 145 (434)
T 4b4t_Q 84 YMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVC------------------EKSIEFAKREKRVFLKHSLSIKLATLH 145 (434)
T ss_dssp HHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHH------------------HHHHHHHHHSSCCSSHHHHHHHHHHHH
T ss_pred HHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHH------------------HHHHHHHHHhCccHHHHHHHHHHHHHH
Confidence 76665422221134556677777777777775555 343332 334467889999999
Q ss_pred HHhcCHHHHHHHHHHHHhc------CCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch-HHHHHHHHHHHhcCCC
Q 002379 651 LRLNCQKAAMRCLRLARNH------SSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLD 723 (929)
Q Consensus 651 ~~~g~~~~A~~~l~~al~~------~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~~~~~l~~~l~~~~~~ 723 (929)
...|+|++|+..+++++.. .+...+++..+|.+|...|++++|...+++++.+.+.. .....
T Consensus 146 ~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~----------- 214 (434)
T 4b4t_Q 146 YQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQT----------- 214 (434)
T ss_dssp HHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH-----------
T ss_pred HHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHH-----------
Confidence 9999999999999998765 34457889999999999999999999999999876543 10000
Q ss_pred CCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC
Q 002379 724 PESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI 777 (929)
Q Consensus 724 ~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~ 777 (929)
.+..+..+|.++...|++++|..+|.+++..
T Consensus 215 -----------------------~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 215 -----------------------VAELDLMSGILHCEDKDYKTAFSYFFESFES 245 (434)
T ss_dssp -----------------------HHHHHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred -----------------------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 1345778889999999999999999988765
No 191
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.08 E-value=2e-10 Score=108.50 Aligned_cols=100 Identities=17% Similarity=0.167 Sum_probs=77.8
Q ss_pred hCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCH----------HHHHHHHHHHHhcCCCchH-HHHHHHHHHHcC
Q 002379 823 YSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKE----------VEAVEELSKAIAFKPDLQM-LHLRAAFYESIG 891 (929)
Q Consensus 823 ~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~----------~eA~~~l~kal~~~p~~~~-~~~la~~~~~~g 891 (929)
.+.+++|+..++++++++|+++.+|+++|.++...+++ ++|+..|+++++++|+... ++++|.+|..+|
T Consensus 15 ~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg 94 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFA 94 (158)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhc
Confidence 34567778888888888888888888888888877664 5888888888888887764 446788887764
Q ss_pred -----------CHHHHHHHHHHHhccCCCCHHHHHHHHHHHh
Q 002379 892 -----------DLTSAIRDSQAALCLDPNHMETLDLYNRARD 922 (929)
Q Consensus 892 -----------~~~~A~~~~~~al~l~P~~~~a~~~~~~l~~ 922 (929)
++++|+++|++|++++|++...+..+..+.+
T Consensus 95 ~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~~k 136 (158)
T 1zu2_A 95 FLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAK 136 (158)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred ccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Confidence 8999999999999999998887777766544
No 192
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.08 E-value=1.5e-09 Score=105.09 Aligned_cols=120 Identities=12% Similarity=0.014 Sum_probs=94.2
Q ss_pred HhHHHHHHHHHHHhccHHHHHHHHHHHHhhcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHH
Q 002379 548 VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLA 627 (929)
Q Consensus 548 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~ 627 (929)
...+..+|..++..|+|++|+..|++++...+..... .....
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~-----------------~~~~~--------------------- 52 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILR-----------------EKPGE--------------------- 52 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHT-----------------SCTTS---------------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccc-----------------CCCCH---------------------
Confidence 3446667777788888888888888877763222100 00000
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch
Q 002379 628 VINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF 707 (929)
Q Consensus 628 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~ 707 (929)
......+|.++.++.++|.+|..+|++++|+..++++++++|+++.+++.+|.++...|++++|+..|+++++++|++
T Consensus 53 --~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~ 130 (162)
T 3rkv_A 53 --PEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAA 130 (162)
T ss_dssp --HHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGG
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCC
Confidence 011223467788999999999999999999999999999999999999999999999999999999999999999998
No 193
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.06 E-value=8.9e-11 Score=134.62 Aligned_cols=155 Identities=11% Similarity=0.011 Sum_probs=103.4
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccCCHhHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Q 002379 499 EKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLALE 578 (929)
Q Consensus 499 ~Ai~~~~kal~l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~ 578 (929)
+|+..|+++++.+|+.+.++..+|..++..|+|++|+..|++++.+.|..... .++.. .+..
T Consensus 252 ~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~---------~~~~~---------~~~~ 313 (457)
T 1kt0_A 252 KAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGL---------SEKES---------KASE 313 (457)
T ss_dssp CCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSC---------CHHHH---------HHHH
T ss_pred cCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccC---------ChHHH---------HHHH
Confidence 66777777777777777777777777777777777777777777655521100 00000 0111
Q ss_pred CCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHH
Q 002379 579 SNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKA 658 (929)
Q Consensus 579 p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~ 658 (929)
+... .++..++.++...+++++|+..+ .++++.+|+++.+++.+|.+|..+|++++
T Consensus 314 ~~~~------~~~~nla~~~~~~g~~~~A~~~~------------------~~al~~~p~~~~a~~~~g~a~~~~g~~~~ 369 (457)
T 1kt0_A 314 SFLL------AAFLNLAMCYLKLREYTKAVECC------------------DKALGLDSANEKGLYRRGEAQLLMNEFES 369 (457)
T ss_dssp HHHH------HHHHHHHHHHHHTTCHHHHHHHH------------------HHHHHHSTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHH------HHHHHHHHHHHHhcCHHHHHHHH------------------HHHHhcCCccHHHHHHHHHHHHHccCHHH
Confidence 1112 45566777777777777774444 78888888888888888888888888888
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHH
Q 002379 659 AMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALS 695 (929)
Q Consensus 659 A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~ 695 (929)
|+..|+++++++|++..++..++.++...+++++|..
T Consensus 370 A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~ 406 (457)
T 1kt0_A 370 AKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDR 406 (457)
T ss_dssp HHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888888888888888887777664
No 194
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.06 E-value=2.9e-09 Score=95.81 Aligned_cols=112 Identities=13% Similarity=0.174 Sum_probs=94.2
Q ss_pred ChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHHHHH
Q 002379 639 KSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILA 718 (929)
Q Consensus 639 ~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~l~~~l~ 718 (929)
.+..++.+|..+...|++++|+..|++++..+|.++.++..+|.++...|++++|+..++++++.+|++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~----------- 71 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDW----------- 71 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-----------
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCccc-----------
Confidence 356788899999999999999999999999999999999999999999999999999999999888866
Q ss_pred hcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC--CCHHHHHHHHHHH
Q 002379 719 DTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI--KHTRAHQGLARVY 790 (929)
Q Consensus 719 ~~~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~--~~~~a~~~la~~~ 790 (929)
..++..+|.++...|++++|+..|+++++. +++.++..++.+.
T Consensus 72 -----------------------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 72 -----------------------------GKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp -----------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred -----------------------------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 445777888888888888888888888887 4556666666653
No 195
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.06 E-value=3.5e-07 Score=105.37 Aligned_cols=55 Identities=13% Similarity=0.028 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch-HHHH
Q 002379 656 QKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFF 711 (929)
Q Consensus 656 ~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~~~~ 711 (929)
.+.....|++++...|..+..|...+..+...|+.++|...|++++.. |.. ..+.
T Consensus 195 ~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~ 250 (493)
T 2uy1_A 195 ESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSL 250 (493)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHH
Confidence 345678999999999999999999999999999999999999999999 887 5444
No 196
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.06 E-value=1.9e-10 Score=104.72 Aligned_cols=102 Identities=10% Similarity=-0.058 Sum_probs=87.4
Q ss_pred hhCCHHHHHHHHHHHHhc---CCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHH-HHHHHHHHcCCHHHHH
Q 002379 822 EYSDREMAKNDLNMATQL---DPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLH-LRAAFYESIGDLTSAI 897 (929)
Q Consensus 822 ~~g~~~~A~~~~~~al~l---~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~-~la~~~~~~g~~~~A~ 897 (929)
..|++++|+..|++++++ +|.++.++..+|.++...|++++|+..|+++++.+|+++..+ .+|.++..+|++++|+
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 357888999999999999 688899999999999999999999999999999999987655 7799999999999999
Q ss_pred HHHHHHhccCCCCHHHHHHHHHHHhh
Q 002379 898 RDSQAALCLDPNHMETLDLYNRARDQ 923 (929)
Q Consensus 898 ~~~~~al~l~P~~~~a~~~~~~l~~~ 923 (929)
..|+++++.+|+++.+.....-+...
T Consensus 82 ~~~~~al~~~p~~~~~~~~~~ai~~~ 107 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQSYKQAILFY 107 (117)
T ss_dssp HHHHHHHHHHCCCHHHHHTHHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 99999999999999887766655433
No 197
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=99.05 E-value=4.9e-11 Score=114.21 Aligned_cols=112 Identities=13% Similarity=0.101 Sum_probs=65.6
Q ss_pred EEEEE-cCeEEEeehhHHhccCHHHHHHhcCCCCcCCCCeeEecCCCCCHHHHHHHhhhHccCC----------------
Q 002379 220 VTFCV-RDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSR---------------- 282 (929)
Q Consensus 220 v~~~v-~~~~~~~hr~iLaa~S~~F~~mf~~~~~e~~~~~i~~~~~~~~~~~~~~~l~~~Yt~~---------------- 282 (929)
|+++. +|+.|.+||.+ |..|++|++||.++.. .+.|.| ++|+..+++.|++|+|+..
T Consensus 6 v~L~SsDg~~f~v~~~v-A~~S~~ik~ml~~~~~---~~~Ipl--~~V~~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~ 79 (160)
T 2p1m_A 6 IVLKSSDGESFEVEEAV-ALESQTIAHMVEDDCV---DNGVPL--PNVTSKILAKVIEYCKRHVEAAASKAEAVEGAATS 79 (160)
T ss_dssp --CCC---------CHH-HHTCTTTC---------------CC--TTSCHHHHHHHHHC---------------------
T ss_pred EEEEcCCCCEEEECHHH-HHHhHHHHHHHHccCC---CCceeC--CcCcHHHHHHHHHHHHHcccCCCcccccccccccc
Confidence 77775 89999999998 8999999999987642 347888 9999999999999999887
Q ss_pred -----------CCCCChhHHHHHHHHhchhChHhHHHHHHHHHHhhcC--ChhhHHHHHHHHHHhChHH
Q 002379 283 -----------VDLFCPGIVLELLSFANRFCCEEMKSACDAHLASLVG--DIEDALILIDYGLEERATL 338 (929)
Q Consensus 283 -----------~~~~~~~~~~~ll~~A~~~~~~~l~~~C~~~l~~~~~--~~~n~~~~~~~a~~~~~~~ 338 (929)
+. ++.+++++|+.+||.+++..|.+.|++++++.+. |++.+..++.+...+.-.+
T Consensus 80 ~~~i~~wD~~Fl~-vd~~~l~eLi~AAnyL~I~~Lldl~c~~vA~~ikgkt~eeir~~f~I~nd~t~eE 147 (160)
T 2p1m_A 80 DDDLKAWDADFMK-IDQATLFELILAANYLNIKNLLDLTCQTVADMIKGKTPEEIRTTFNIKNDFTPEE 147 (160)
T ss_dssp ----------------------CHHHHHHTTCHHHHHHHHHHHHHTTTTCCHHHHHHHTTCCCCCCHHH
T ss_pred cchhhHHHHHHHc-CCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHHHHHHcCCCCCCCHHH
Confidence 34 7788999999999999999999999999999994 3888877777665554433
No 198
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.04 E-value=9e-09 Score=116.75 Aligned_cols=199 Identities=13% Similarity=0.040 Sum_probs=146.3
Q ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchH-----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002379 640 SFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEH-----------------ERLVYEGWILYDTGHREEALSRAEKSIS 702 (929)
Q Consensus 640 ~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~-----------------~~~~~lg~~~~~~g~~~eA~~~~~~al~ 702 (929)
|......|..+...|+|++|++.|.++++..|... .++..+|.+|...|++++|++.+++++.
T Consensus 4 p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~ 83 (434)
T 4b4t_Q 4 PGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTE 83 (434)
T ss_dssp TTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45567788889999999999999999999887642 4588999999999999999999999998
Q ss_pred hccch-HH--HHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCc---hhHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 002379 703 IERTF-EA--FFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLR---KGQALNNLGSIYVECGKLDQAENCYINALD 776 (929)
Q Consensus 703 ~~p~~-~~--~~~l~~~l~~~~~~~~~~~~a~~~~e~Al~~~~~al~---~~~a~~~lg~~~~~~g~~~eA~~~~~~al~ 776 (929)
..+.. .+ .......+......++....++..+.+++......-. ...++.++|.++...|+|++|+..+++++.
T Consensus 84 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 163 (434)
T 4b4t_Q 84 YMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLR 163 (434)
T ss_dssp HHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHH
Confidence 87665 22 1222233344445566777777777777766554422 357888999999999999999999998876
Q ss_pred C-----C---CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCH-------HHHHHHh----hhCCHHHHHHHHHHHH
Q 002379 777 I-----K---HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSA-------SAFEKRS----EYSDREMAKNDLNMAT 837 (929)
Q Consensus 777 ~-----~---~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-------~~~~~lg----~~g~~~~A~~~~~~al 837 (929)
. + ...++..+|.+|...|++++|...+++++...+... ..+...| ..+++++|..+|.+++
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 164 EFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 5 1 125788899999999999999999998887654321 1233333 3466666666666665
Q ss_pred h
Q 002379 838 Q 838 (929)
Q Consensus 838 ~ 838 (929)
+
T Consensus 244 ~ 244 (434)
T 4b4t_Q 244 E 244 (434)
T ss_dssp H
T ss_pred H
Confidence 4
No 199
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.02 E-value=3.8e-09 Score=100.95 Aligned_cols=139 Identities=17% Similarity=0.049 Sum_probs=116.5
Q ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchH------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHH
Q 002379 640 SFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEH------ERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLK 713 (929)
Q Consensus 640 ~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~------~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~l 713 (929)
+.++..+|.++...|++++|+..++++++..+... .++..+|.++...|++++|+..+++++.+.+....
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~---- 84 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD---- 84 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC----
Confidence 45788999999999999999999999998765432 57889999999999999999999999987654300
Q ss_pred HHHHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC----CC----HHHHHH
Q 002379 714 AYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI----KH----TRAHQG 785 (929)
Q Consensus 714 ~~~l~~~~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~----~~----~~a~~~ 785 (929)
.. ....++.++|.++...|++++|+.+++++++. ++ ..++..
T Consensus 85 -------------------~~-----------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 134 (164)
T 3ro3_A 85 -------------------RA-----------VEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWS 134 (164)
T ss_dssp -------------------HH-----------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -------------------cH-----------HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHH
Confidence 00 01345889999999999999999999999977 22 257899
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHccC
Q 002379 786 LARVYYLKNELKAAYDEMTKLLEKAQY 812 (929)
Q Consensus 786 la~~~~~~g~~~~A~~~~~~al~~~p~ 812 (929)
+|.++...|++++|...++++++....
T Consensus 135 la~~~~~~g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 135 LGNAYTALGNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999987654
No 200
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.02 E-value=1.4e-09 Score=97.02 Aligned_cols=103 Identities=15% Similarity=0.041 Sum_probs=91.4
Q ss_pred CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccc--hHHHHHH
Q 002379 636 DPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERT--FEAFFLK 713 (929)
Q Consensus 636 ~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~--~~~~~~l 713 (929)
+|+++.++..+|.++...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..++++++..|+ .
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~------ 75 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYN------ 75 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTC------
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccch------
Confidence 68888899999999999999999999999999999999999999999999999999999999999998887 5
Q ss_pred HHHHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHc-CCHHHHHHHHHHHHcCC
Q 002379 714 AYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVEC-GKLDQAENCYINALDIK 778 (929)
Q Consensus 714 ~~~l~~~~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~-g~~~eA~~~~~~al~~~ 778 (929)
..++..+|.++... |++++|++++++++...
T Consensus 76 ----------------------------------~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 76 ----------------------------------KDVWAAKADALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp ----------------------------------HHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred ----------------------------------HHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcc
Confidence 44577888888888 88888888888888763
No 201
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.01 E-value=1.3e-10 Score=133.89 Aligned_cols=129 Identities=18% Similarity=0.131 Sum_probs=99.5
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHh----hhCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcC
Q 002379 783 HQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS----EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQ 858 (929)
Q Consensus 783 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg----~~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g 858 (929)
+..+|.++...|++++|++.|+++++.+|++..++..+| ..|++++|+..++++++++|.++.++.++|.+|..+|
T Consensus 9 ~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g 88 (477)
T 1wao_1 9 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALG 88 (477)
T ss_dssp SSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 445566666777777777777777777777777777776 5577777777788888888888889999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCchHHH-HHHHH--HHHcCCHHHHHHHHH-----------HHhccCCCCH
Q 002379 859 KEVEAVEELSKAIAFKPDLQMLH-LRAAF--YESIGDLTSAIRDSQ-----------AALCLDPNHM 911 (929)
Q Consensus 859 ~~~eA~~~l~kal~~~p~~~~~~-~la~~--~~~~g~~~~A~~~~~-----------~al~l~P~~~ 911 (929)
++++|++.|+++++++|++...+ .++.+ +..+|++++|++.++ ++++++|++.
T Consensus 89 ~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~ 155 (477)
T 1wao_1 89 KFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYS 155 (477)
T ss_dssp CHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTCC
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhcccccccc
Confidence 99999999999999999887554 56766 888999999999999 8888887753
No 202
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.01 E-value=4.1e-09 Score=99.44 Aligned_cols=116 Identities=14% Similarity=0.040 Sum_probs=88.7
Q ss_pred hcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCch---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHH
Q 002379 634 INDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE---HERLVYEGWILYDTGHREEALSRAEKSISIERTFEAF 710 (929)
Q Consensus 634 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~---~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~ 710 (929)
..+|.++..++.+|..+...|++++|+..|+++++.+|++ ..++..+|.++...|++++|+..++++++.+|++
T Consensus 22 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~--- 98 (148)
T 2dba_A 22 TPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGD--- 98 (148)
T ss_dssp CTTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCC---
T ss_pred ccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccC---
Confidence 3457778888888888888899999999999988888887 7788888888888888888888888888877765
Q ss_pred HHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC--CCHHHHHHHHH
Q 002379 711 FLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI--KHTRAHQGLAR 788 (929)
Q Consensus 711 ~~l~~~l~~~~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~--~~~~a~~~la~ 788 (929)
..+++.+|.++...|++++|+.+|++++++ ++..++..++.
T Consensus 99 -------------------------------------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 141 (148)
T 2dba_A 99 -------------------------------------VKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRN 141 (148)
T ss_dssp -------------------------------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred -------------------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHH
Confidence 344666777777777777777777777766 33455555554
Q ss_pred H
Q 002379 789 V 789 (929)
Q Consensus 789 ~ 789 (929)
+
T Consensus 142 ~ 142 (148)
T 2dba_A 142 I 142 (148)
T ss_dssp H
T ss_pred H
Confidence 4
No 203
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.00 E-value=2.1e-09 Score=98.78 Aligned_cols=117 Identities=19% Similarity=0.123 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHhhhCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCH
Q 002379 781 RAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKE 860 (929)
Q Consensus 781 ~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~ 860 (929)
..+..+|.++...|++++|+..+++++.. +|.++.++..+|.++...|++
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~------------------------------~~~~~~~~~~la~~~~~~~~~ 54 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKEL------------------------------DPTNMTYITNQAAVYFEKGDY 54 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------------------CTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhc------------------------------CCccHHHHHHHHHHHHHhccH
Confidence 45566666666666666666666555554 455566777888899999999
Q ss_pred HHHHHHHHHHHhcCCCc-------h-HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHhhhhhhc
Q 002379 861 VEAVEELSKAIAFKPDL-------Q-MLHLRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNRARDQASHQQ 928 (929)
Q Consensus 861 ~eA~~~l~kal~~~p~~-------~-~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~l~~~~~~~~ 928 (929)
++|+..+++++...|++ . .++.+|.++...|++++|+..|+++++++| ++.....+..+.....+.+
T Consensus 55 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~ 129 (131)
T 1elr_A 55 NKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILKEQE 129 (131)
T ss_dssp HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHhh
Confidence 99999999999887754 3 344679999999999999999999999998 5888888888877665543
No 204
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.99 E-value=7e-09 Score=94.25 Aligned_cols=48 Identities=8% Similarity=-0.055 Sum_probs=25.3
Q ss_pred ChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Q 002379 639 KSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYD 686 (929)
Q Consensus 639 ~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~ 686 (929)
++.++..+|.++...|++++|+..++++++.+|+++.++..+|.++..
T Consensus 76 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 76 NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK 123 (125)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence 333444555555555555555555555555555555555555555443
No 205
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.98 E-value=3.9e-10 Score=123.77 Aligned_cols=71 Identities=14% Similarity=0.036 Sum_probs=46.8
Q ss_pred CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHH-----------------HHHHHHHHHHHcCCHHHHHHHHHH
Q 002379 637 PGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHE-----------------RLVYEGWILYDTGHREEALSRAEK 699 (929)
Q Consensus 637 p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~-----------------~~~~lg~~~~~~g~~~eA~~~~~~ 699 (929)
+..+..+..+|..+...|++++|+..|++++...|++.. ++.++|.+|...|++++|+..|++
T Consensus 176 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~ 255 (338)
T 2if4_A 176 IGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNI 255 (338)
T ss_dssp HHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 344667888888888888899999999988888887652 444444445445555555555554
Q ss_pred HHhhccch
Q 002379 700 SISIERTF 707 (929)
Q Consensus 700 al~~~p~~ 707 (929)
+++++|++
T Consensus 256 al~~~p~~ 263 (338)
T 2if4_A 256 VLTEEEKN 263 (338)
T ss_dssp HHHHCTTC
T ss_pred HHHhCCCC
Confidence 44444443
No 206
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.97 E-value=1.9e-09 Score=119.65 Aligned_cols=131 Identities=15% Similarity=0.151 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHhhhCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHH
Q 002379 782 AHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEV 861 (929)
Q Consensus 782 a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~ 861 (929)
.+..+|..+...|++++|+..|+++++..+... +....+.....+|....++.++|.++..+|+++
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~ 290 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSR--------------AAAEDADGAKLQPVALSCVLNIGACKLKMSDWQ 290 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH--------------HHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCc--------------cccChHHHHHHHHHHHHHHHHHHHHHHhccCHH
Confidence 344555555555555555555555555433221 011133344556677788889999999999999
Q ss_pred HHHHHHHHHHhcCCCchHHH-HHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHhhhhh
Q 002379 862 EAVEELSKAIAFKPDLQMLH-LRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNRARDQASH 926 (929)
Q Consensus 862 eA~~~l~kal~~~p~~~~~~-~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~l~~~~~~ 926 (929)
+|++.++++++++|++...+ .+|.+|..+|++++|+..|+++++++|++..++..++.+.....+
T Consensus 291 ~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~ 356 (370)
T 1ihg_A 291 GAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKA 356 (370)
T ss_dssp HHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999886554 679999999999999999999999999999998888887765543
No 207
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.96 E-value=6.1e-10 Score=122.23 Aligned_cols=150 Identities=11% Similarity=0.013 Sum_probs=77.7
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHh----hh
Q 002379 748 GQALNNLGSIYVECGKLDQAENCYINALDIKHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS----EY 823 (929)
Q Consensus 748 ~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg----~~ 823 (929)
...+..+|..+...|++++|+..|++++...+.... +...|++.++...+. ..+|.++| ..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~------~~~~~~~~~~~~~l~---------~~~~~nla~~~~~~ 243 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM------FQLYGKYQDMALAVK---------NPCHLNIAACLIKL 243 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH------HTCCHHHHHHHHHHH---------THHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh------hhhcccHHHHHHHHH---------HHHHHHHHHHHHHc
Confidence 577888888888899999999999988887554321 122233333332221 12444444 45
Q ss_pred CCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHH-HHHHH-HHHcCCHHHHHHHHH
Q 002379 824 SDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLH-LRAAF-YESIGDLTSAIRDSQ 901 (929)
Q Consensus 824 g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~-~la~~-~~~~g~~~~A~~~~~ 901 (929)
|++++|+..++++++++|.+..+++.+|.+|..+|++++|+..|+++++++|++...+ .++.+ ....+..+++...|+
T Consensus 244 g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~ 323 (338)
T 2if4_A 244 KRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYK 323 (338)
T ss_dssp TCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------------
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777777777777777788888888888899999999999999999998888886555 55666 444677788888899
Q ss_pred HHhccCCCCHH
Q 002379 902 AALCLDPNHME 912 (929)
Q Consensus 902 ~al~l~P~~~~ 912 (929)
+++...|+++.
T Consensus 324 ~~l~~~p~~~~ 334 (338)
T 2if4_A 324 GIFKGKDEGGA 334 (338)
T ss_dssp -----------
T ss_pred HhhCCCCCCCC
Confidence 99988888764
No 208
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.96 E-value=4.7e-09 Score=96.42 Aligned_cols=121 Identities=12% Similarity=0.155 Sum_probs=100.7
Q ss_pred ChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch-HHHHHHHHHH
Q 002379 639 KSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYIL 717 (929)
Q Consensus 639 ~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~~~~~l~~~l 717 (929)
.+..++.+|..+...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..+++++...|+. ..+..
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~----- 77 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQ----- 77 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHH-----
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHH-----
Confidence 457789999999999999999999999999999999999999999999999999999999999988754 11000
Q ss_pred HhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHh
Q 002379 718 ADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI-KHTRAHQGLARVYYLK 793 (929)
Q Consensus 718 ~~~~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~-~~~~a~~~la~~~~~~ 793 (929)
...++..+|.++...|++++|+.+|+++++. .++..+..++.+....
T Consensus 78 -----------------------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~ 125 (131)
T 1elr_A 78 -----------------------------IAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQAEKIL 125 (131)
T ss_dssp -----------------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred -----------------------------HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 0345788899999999999999999999887 4456666666665443
No 209
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.94 E-value=2.3e-10 Score=131.81 Aligned_cols=132 Identities=16% Similarity=0.080 Sum_probs=103.8
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHH
Q 002379 552 ELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQ 631 (929)
Q Consensus 552 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~ 631 (929)
..+|..+...|++++|+..|+++++.+|++. .++..+|.++...|++++|...+ ++
T Consensus 10 ~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~------~~~~~lg~~~~~~g~~~~A~~~~------------------~~ 65 (477)
T 1wao_1 10 KTQANDYFKAKDYENAIKFYSQAIELNPSNA------IYYGNRSLAYLRTECYGYALGDA------------------TR 65 (477)
T ss_dssp SSSSSSTTTTTCHHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHHTTCHHHHHHHH------------------HH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCCccH------HHHHHHHHHHHHhcCHHHHHHHH------------------HH
Confidence 3445566677777777777777777777776 66667777777777777774444 77
Q ss_pred HHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHH--HHHcCCHHHHHHHHH-----------
Q 002379 632 MLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWI--LYDTGHREEALSRAE----------- 698 (929)
Q Consensus 632 al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~--~~~~g~~~eA~~~~~----------- 698 (929)
+++.+|+++.+++.+|.+|..+|++++|+..|+++++.+|++..++..++.+ +...|++++|++.++
T Consensus 66 al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 145 (477)
T 1wao_1 66 AIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDI 145 (477)
T ss_dssp HHHSCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTT
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhh
Confidence 7777888888899999999999999999999999999999999999999988 888999999999999
Q ss_pred HHHhhccch
Q 002379 699 KSISIERTF 707 (929)
Q Consensus 699 ~al~~~p~~ 707 (929)
+++.++|+.
T Consensus 146 ~al~~~~~~ 154 (477)
T 1wao_1 146 ESMTIEDEY 154 (477)
T ss_dssp SSCCCCTTC
T ss_pred hhccccccc
Confidence 777777654
No 210
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.94 E-value=4e-09 Score=93.96 Aligned_cols=106 Identities=13% Similarity=0.071 Sum_probs=97.7
Q ss_pred cCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHH
Q 002379 578 ESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQK 657 (929)
Q Consensus 578 ~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~ 657 (929)
+|++. ..+..+|.++...|++++|...+ +++++.+|.++.++..+|.++...|+++
T Consensus 2 ~p~~~------~~~~~~~~~~~~~~~~~~A~~~~------------------~~a~~~~~~~~~~~~~~a~~~~~~~~~~ 57 (112)
T 2kck_A 2 VDQNP------EEYYLEGVLQYDAGNYTESIDLF------------------EKAIQLDPEESKYWLMKGKALYNLERYE 57 (112)
T ss_dssp CCSST------TGGGGHHHHHHSSCCHHHHHHHH------------------HHHHHHCCCCHHHHHHHHHHHHHTTCHH
T ss_pred CCCcH------HHHHHHHHHHHHhhhHHHHHHHH------------------HHHHHhCcCCHHHHHHHHHHHHHccCHH
Confidence 46666 66677899999999999996665 9999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCc--hHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhccch
Q 002379 658 AAMRCLRLARNHSSS--EHERLVYEGWILYDT-GHREEALSRAEKSISIERTF 707 (929)
Q Consensus 658 ~A~~~l~~al~~~p~--~~~~~~~lg~~~~~~-g~~~eA~~~~~~al~~~p~~ 707 (929)
+|+..++++++.+|. +..++..+|.++... |++++|+..+++++...|+.
T Consensus 58 ~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 58 EAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HHHHHHHHHHHTSCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHHHHhCcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 999999999999999 999999999999999 99999999999999998864
No 211
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.93 E-value=2.1e-09 Score=101.48 Aligned_cols=82 Identities=12% Similarity=-0.029 Sum_probs=76.7
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHhcCH----------HHHHHHHHHHHhcCCchHHHHHHHHHHHHHcC-------
Q 002379 626 LAVINQMLINDPGKSFLRFRQSLLLLRLNCQ----------KAAMRCLRLARNHSSSEHERLVYEGWILYDTG------- 688 (929)
Q Consensus 626 l~~~~~al~~~p~~~~~~~~lg~~~~~~g~~----------~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g------- 688 (929)
+..++++++.+|+++.+|+++|.++..++++ ++|+..|+++++++|+++.+|+++|.+|..+|
T Consensus 22 ~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~ 101 (158)
T 1zu2_A 22 RQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDET 101 (158)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchh
Confidence 4455999999999999999999999999875 59999999999999999999999999999885
Q ss_pred ----CHHHHHHHHHHHHhhccch
Q 002379 689 ----HREEALSRAEKSISIERTF 707 (929)
Q Consensus 689 ----~~~eA~~~~~~al~~~p~~ 707 (929)
++++|+.+|++|++++|++
T Consensus 102 ~a~g~~~eA~~~~~kAl~l~P~~ 124 (158)
T 1zu2_A 102 EAKHNFDLATQFFQQAVDEQPDN 124 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTC
T ss_pred hhhccHHHHHHHHHHHHHhCCCC
Confidence 8999999999999999988
No 212
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.92 E-value=1.1e-08 Score=94.33 Aligned_cols=106 Identities=16% Similarity=0.182 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHcC--CCH---HHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHhhh
Q 002379 749 QALNNLGSIYVECGKLDQAENCYINALDI--KHT---RAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEY 823 (929)
Q Consensus 749 ~a~~~lg~~~~~~g~~~eA~~~~~~al~~--~~~---~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 823 (929)
.+++.+|..+...|++++|+..|+++++. +++ .+++.+|.++...|++++|+..+++++...|++..
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~-------- 74 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDK-------- 74 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTT--------
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcc--------
Confidence 45788999999999999999999999987 344 69999999999999999999999888887766511
Q ss_pred CCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHH
Q 002379 824 SDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLH 881 (929)
Q Consensus 824 g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~ 881 (929)
.+.+++.+|.++...|++++|+..|+++++..|+++...
T Consensus 75 -------------------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 113 (129)
T 2xev_A 75 -------------------AAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAAR 113 (129)
T ss_dssp -------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHH
T ss_pred -------------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHH
Confidence 145677788899999999999999999999998886554
No 213
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.90 E-value=3e-09 Score=96.71 Aligned_cols=82 Identities=12% Similarity=0.075 Sum_probs=78.1
Q ss_pred HHHHHHHHhc---CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002379 626 LAVINQMLIN---DPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSIS 702 (929)
Q Consensus 626 l~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~ 702 (929)
+..++++++. +|+++.+++.+|.++..+|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++.
T Consensus 10 ~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 89 (117)
T 3k9i_A 10 VPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIA 89 (117)
T ss_dssp HHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4455999999 6889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccch
Q 002379 703 IERTF 707 (929)
Q Consensus 703 ~~p~~ 707 (929)
..|++
T Consensus 90 ~~p~~ 94 (117)
T 3k9i_A 90 ETSDD 94 (117)
T ss_dssp HHCCC
T ss_pred hCCCc
Confidence 99987
No 214
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.90 E-value=9e-09 Score=114.17 Aligned_cols=122 Identities=12% Similarity=0.005 Sum_probs=93.0
Q ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHh----------------cCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 002379 640 SFLRFRQSLLLLRLNCQKAAMRCLRLARN----------------HSSSEHERLVYEGWILYDTGHREEALSRAEKSISI 703 (929)
Q Consensus 640 ~~~~~~lg~~~~~~g~~~~A~~~l~~al~----------------~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~ 703 (929)
+..+..+|..+...|++++|+..|+++++ .+|....++.++|.++..+|++++|+..+++++++
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 45688999999999999999999999998 66666777777777777777777777777777777
Q ss_pred ccchHHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC--CCHH
Q 002379 704 ERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI--KHTR 781 (929)
Q Consensus 704 ~p~~~~~~~l~~~l~~~~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~--~~~~ 781 (929)
+|++ ..+++++|.+|...|++++|+..|++++++ ++..
T Consensus 303 ~p~~----------------------------------------~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~ 342 (370)
T 1ihg_A 303 DPSN----------------------------------------TKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKA 342 (370)
T ss_dssp CTTC----------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred Cchh----------------------------------------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH
Confidence 7765 445667777777777777777777777777 3456
Q ss_pred HHHHHHHHHHHhCCHHHHHH
Q 002379 782 AHQGLARVYYLKNELKAAYD 801 (929)
Q Consensus 782 a~~~la~~~~~~g~~~~A~~ 801 (929)
++..++.++...++.+++..
T Consensus 343 ~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 343 IQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 67777777776666665543
No 215
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.88 E-value=1e-06 Score=101.34 Aligned_cols=351 Identities=9% Similarity=-0.080 Sum_probs=209.2
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccCCHhHHHHHHHHHHHhcc-HHHHHHHHHHHHhh
Q 002379 499 EKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADD-YESALRDTLALLAL 577 (929)
Q Consensus 499 ~Ai~~~~kal~l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~g~-~~~A~~~~~~al~~ 577 (929)
.|...|+++++..|. |+++.+...|++++...|+.+.|..........++ .+.....|+.++..
T Consensus 13 ~aR~vyer~l~~~P~---------------~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~ 77 (493)
T 2uy1_A 13 SPSAIMEHARRLYMS---------------KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQ 77 (493)
T ss_dssp CHHHHHHHHHHHHHT---------------TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCC---------------CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHH
Confidence 466677777777665 88999999999999888888887776666666553 45567788888865
Q ss_pred ---cCCchhhhccccHHHHHHHHHH----hhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHH-HHH-
Q 002379 578 ---ESNYMMFHGRVSGDHLVKLLNH----HVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFR-QSL- 648 (929)
Q Consensus 578 ---~p~~~~~~~~~~a~~ll~~~~~----~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~-lg~- 648 (929)
+|... ..+........ ..++.+.+ -..|++++..-+.+..-+.. ...
T Consensus 78 vg~d~~s~------~iW~~Yi~f~~~~~~~~~~~~~v------------------R~iy~rAL~~P~~~~~~lw~~Y~~f 133 (493)
T 2uy1_A 78 FENYWDSY------GLYKEYIEEEGKIEDEQTRIEKI------------------RNGYMRALQTPMGSLSELWKDFENF 133 (493)
T ss_dssp STTCTTCH------HHHHHHHHHTSSCSSHHHHHHHH------------------HHHHHHHHTSCCTTHHHHHHHHHHH
T ss_pred cCCCcccH------HHHHHHHHHHHhchhhhHHHHHH------------------HHHHHHHHhChhhhHHHHHHHHHHH
Confidence 34433 11111111110 11223333 34457777743322222211 111
Q ss_pred ------------HHHHhcCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHc--CC-----HHHHHHHHHHHHhhccch-
Q 002379 649 ------------LLLRLNCQKAAMRCLRLARNHSSS-EHERLVYEGWILYDT--GH-----REEALSRAEKSISIERTF- 707 (929)
Q Consensus 649 ------------~~~~~g~~~~A~~~l~~al~~~p~-~~~~~~~lg~~~~~~--g~-----~~eA~~~~~~al~~~p~~- 707 (929)
+-...+.+..|...|+.+....+. ....|..+...-... |- .+.....|++++...|..
T Consensus 134 E~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~ 213 (493)
T 2uy1_A 134 ELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAE 213 (493)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCH
T ss_pred HHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCH
Confidence 111223444555555555543222 233454433332221 11 345678999999988888
Q ss_pred HHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC----------
Q 002379 708 EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI---------- 777 (929)
Q Consensus 708 ~~~~~l~~~l~~~~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~---------- 777 (929)
..|...+..+...+ ....+...+++|+.. ... ...+...+.. .+.++....+..+...
T Consensus 214 ~lW~~ya~~~~~~~----~~~~ar~i~erAi~~-P~~---~~l~~~y~~~----~e~~~~~~~l~~~~~~~~~~~~~~~~ 281 (493)
T 2uy1_A 214 EVYFFYSEYLIGIG----QKEKAKKVVERGIEM-SDG---MFLSLYYGLV----MDEEAVYGDLKRKYSMGEAESAEKVF 281 (493)
T ss_dssp HHHHHHHHHHHHTT----CHHHHHHHHHHHHHH-CCS---SHHHHHHHHH----TTCTHHHHHHHHHTC----------C
T ss_pred HHHHHHHHHHHHcC----CHHHHHHHHHHHHhC-CCc---HHHHHHHHhh----cchhHHHHHHHHHHHhhccchhhhhc
Confidence 88888887776654 456666667777764 111 1222222221 1111111111111110
Q ss_pred --CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHh-----hhCCHHHHHHHHHHHHhcCCCCcHHHHHH
Q 002379 778 --KHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS-----EYSDREMAKNDLNMATQLDPLRTYPYRYR 850 (929)
Q Consensus 778 --~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg-----~~g~~~~A~~~~~~al~l~p~~~~~~~~l 850 (929)
.....|...+....+.++.+.|...|.++ ...+.....|...+ ..++.+.|...|+.+++..|+.+..|...
T Consensus 282 ~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~y 360 (493)
T 2uy1_A 282 SKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEF 360 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 12356777888877888899999999999 33223455555544 22468999999999999989888888888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCchHHH-HHHHHHHHcCCHHHHHHHHHHHhc
Q 002379 851 AAVLMDDQKEVEAVEELSKAIAFKPDLQMLH-LRAAFYESIGDLTSAIRDSQAALC 905 (929)
Q Consensus 851 a~~~~~~g~~~eA~~~l~kal~~~p~~~~~~-~la~~~~~~g~~~~A~~~~~~al~ 905 (929)
+......|+.+.|...|+++ +....++ .....-...|+.+.+...+++++.
T Consensus 361 id~e~~~~~~~~aR~l~er~----~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 361 FLFLLRIGDEENARALFKRL----EKTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHTCHHHHHHHHHHS----CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 88888899999999999987 2344444 335566677999999998888875
No 216
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.85 E-value=1.1e-08 Score=97.53 Aligned_cols=140 Identities=14% Similarity=0.048 Sum_probs=108.6
Q ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHhcccCCH-------hHHHHHHHHHHHhccHHHHHHHHHHHHhhcCCchhhhcc
Q 002379 515 SFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSV-------DCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGR 587 (929)
Q Consensus 515 ~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~-------~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 587 (929)
..++..+|.++...|++++|+..+++++...+.. ..+..+|.++...|++++|+..+++++...+.....
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~--- 85 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR--- 85 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH---
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCc---
Confidence 4577888888888888888888888888665411 257778888888888888888888887765444300
Q ss_pred ccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 002379 588 VSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLAR 667 (929)
Q Consensus 588 ~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al 667 (929)
+....++..+|.++...|++++|+..+++++
T Consensus 86 -------------------------------------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 116 (164)
T 3ro3_A 86 -------------------------------------------------AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 116 (164)
T ss_dssp -------------------------------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -------------------------------------------------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 0124567889999999999999999999998
Q ss_pred hcCC------chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccc
Q 002379 668 NHSS------SEHERLVYEGWILYDTGHREEALSRAEKSISIERT 706 (929)
Q Consensus 668 ~~~p------~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~ 706 (929)
+..+ ....++..+|.++...|++++|+..+++++++...
T Consensus 117 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 117 AIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 7632 23567889999999999999999999999987543
No 217
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.77 E-value=4.5e-08 Score=88.36 Aligned_cols=82 Identities=20% Similarity=0.184 Sum_probs=78.8
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc
Q 002379 626 LAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIER 705 (929)
Q Consensus 626 l~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p 705 (929)
+..++++++.+|+++.+++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|++++++.|
T Consensus 5 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 84 (115)
T 2kat_A 5 TERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQ 84 (115)
T ss_dssp HHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 56679999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred ch
Q 002379 706 TF 707 (929)
Q Consensus 706 ~~ 707 (929)
+.
T Consensus 85 ~~ 86 (115)
T 2kat_A 85 SR 86 (115)
T ss_dssp HH
T ss_pred cc
Confidence 65
No 218
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.74 E-value=6.1e-08 Score=87.48 Aligned_cols=84 Identities=12% Similarity=0.072 Sum_probs=77.3
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHH-HHHHHHHHcCCHHHHHHHHHHHhcc
Q 002379 828 MAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLH-LRAAFYESIGDLTSAIRDSQAALCL 906 (929)
Q Consensus 828 ~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~-~la~~~~~~g~~~~A~~~~~~al~l 906 (929)
+|+..|+++++.+|.++.+++.+|.++...|++++|+..|+++++.+|++...+ .+|.+|..+|++++|+..|++++++
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 578889999999999999999999999999999999999999999999987554 7899999999999999999999999
Q ss_pred CCCCH
Q 002379 907 DPNHM 911 (929)
Q Consensus 907 ~P~~~ 911 (929)
+|++.
T Consensus 83 ~~~~~ 87 (115)
T 2kat_A 83 AQSRG 87 (115)
T ss_dssp HHHHT
T ss_pred ccccc
Confidence 88543
No 219
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.70 E-value=7.9e-08 Score=84.48 Aligned_cols=73 Identities=14% Similarity=0.168 Sum_probs=68.3
Q ss_pred cCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch
Q 002379 635 NDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF 707 (929)
Q Consensus 635 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~ 707 (929)
.+|+++.+++.+|.++...|++++|+..|+++++.+|+++.+|..+|.+|...|++++|+..|++++++.|..
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~ 74 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREE 74 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcC
Confidence 4699999999999999999999999999999999999999999999999999999999999999999998765
No 220
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.65 E-value=1.3e-07 Score=80.79 Aligned_cols=83 Identities=13% Similarity=0.083 Sum_probs=77.1
Q ss_pred CChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch-HHHHHHHHH
Q 002379 638 GKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYI 716 (929)
Q Consensus 638 ~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~~~~~l~~~ 716 (929)
.++.+++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++++|++ .++..++.+
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 86 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 4577899999999999999999999999999999999999999999999999999999999999999998 888888877
Q ss_pred HHhc
Q 002379 717 LADT 720 (929)
Q Consensus 717 l~~~ 720 (929)
+...
T Consensus 87 ~~~~ 90 (91)
T 1na3_A 87 KQKQ 90 (91)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 6543
No 221
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.60 E-value=7.3e-08 Score=84.73 Aligned_cols=75 Identities=13% Similarity=0.131 Sum_probs=63.7
Q ss_pred cCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHH-HHHHHHHHcCCHHHHHHHHHHHhccCCCCHHH
Q 002379 839 LDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLH-LRAAFYESIGDLTSAIRDSQAALCLDPNHMET 913 (929)
Q Consensus 839 l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~-~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a 913 (929)
.+|+++.+++.+|.++...|++++|+..|+++++++|+++..+ .+|.+|..+|++++|+..|++++++.|++.+.
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~ 77 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQ 77 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCch
Confidence 4688999999999999999999999999999999999887555 77999999999999999999999987754433
No 222
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.60 E-value=4.8e-07 Score=103.39 Aligned_cols=139 Identities=12% Similarity=0.007 Sum_probs=108.9
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHhc-----CC---chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHHH
Q 002379 645 RQSLLLLRLNCQKAAMRCLRLARNH-----SS---SEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYI 716 (929)
Q Consensus 645 ~lg~~~~~~g~~~~A~~~l~~al~~-----~p---~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~l~~~ 716 (929)
..+..+..+|+|++|+..+++++++ .| +....+.++|.+|..+|+|++|+.++++++++....
T Consensus 314 e~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~--------- 384 (490)
T 3n71_A 314 EKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKL--------- 384 (490)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH---------
Confidence 3445567889999999999999875 33 446678999999999999999999999999864221
Q ss_pred HHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC-------CCH---HHHHHH
Q 002379 717 LADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI-------KHT---RAHQGL 786 (929)
Q Consensus 717 l~~~~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~-------~~~---~a~~~l 786 (929)
+.+.... .+..+++||.+|..+|++++|+..|++|+++ +|+ +....+
T Consensus 385 -----lG~~Hp~------------------~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l 441 (490)
T 3n71_A 385 -----YHHNNAQ------------------LGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMR 441 (490)
T ss_dssp -----SCTTCHH------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHH
T ss_pred -----cCCCCHH------------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 1111111 1456999999999999999999999999987 455 366789
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHccCCHH
Q 002379 787 ARVYYLKNELKAAYDEMTKLLEKAQYSAS 815 (929)
Q Consensus 787 a~~~~~~g~~~~A~~~~~~al~~~p~~~~ 815 (929)
+.++..++.+++|...|.++.+..-++-.
T Consensus 442 ~~~~~e~~~~~~ae~~~~~~~~~~~~~~~ 470 (490)
T 3n71_A 442 MQTEMELRMFRQNEFMYHKMREAALNNQP 470 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999998776544433
No 223
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.57 E-value=2.6e-07 Score=78.85 Aligned_cols=82 Identities=24% Similarity=0.233 Sum_probs=73.6
Q ss_pred CCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHH-HHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHH
Q 002379 842 LRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLH-LRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNRA 920 (929)
Q Consensus 842 ~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~-~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~l 920 (929)
..+.++..+|.++...|++++|+..|+++++.+|++...+ .+|.++...|++++|+..|+++++++|+++.++..++.+
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 86 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 3567889999999999999999999999999999887554 779999999999999999999999999999999998887
Q ss_pred Hhh
Q 002379 921 RDQ 923 (929)
Q Consensus 921 ~~~ 923 (929)
...
T Consensus 87 ~~~ 89 (91)
T 1na3_A 87 KQK 89 (91)
T ss_dssp HHH
T ss_pred HHh
Confidence 654
No 224
>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1
Probab=98.56 E-value=1.8e-07 Score=81.16 Aligned_cols=80 Identities=26% Similarity=0.319 Sum_probs=70.0
Q ss_pred EEEEE-cCeEEEeehhHHhccCHHHHHHhcCCCCcCCCCeeEecCCCCCHHHHHHHhhhHccCC-----------CCC--
Q 002379 220 VTFCV-RDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSR-----------VDL-- 285 (929)
Q Consensus 220 v~~~v-~~~~~~~hr~iLaa~S~~F~~mf~~~~~e~~~~~i~~~~~~~~~~~~~~~l~~~Yt~~-----------~~~-- 285 (929)
|+++- +|+.|.++|.+ |..|..++.||.+++ |+..+.|.| ++|+..+++.|++|+|... ++.
T Consensus 6 v~L~SsDg~~f~V~~~v-A~~S~~ik~ml~~~~-e~~~~~Ipl--p~V~~~iL~kVieyc~~h~~~~~~~~~~~~i~~w~ 81 (99)
T 1hv2_A 6 VTLVSKDDKEYEISRSA-AMISPTLKAMIEGPF-RESKGRIEL--KQFDSHILEKAVEYLNYNLKYSGVSEDDDEIPEFE 81 (99)
T ss_dssp EEEEETTTEEEEEEHHH-HTTCHHHHHHHHSST-TTCTTEEEE--TTSCHHHHHHHHHHHHHHHHHHHHCSSCSSCCCCC
T ss_pred EEEEecCCCEEEECHHH-HHHhHHHHHHHhccc-ccCCCceec--CCcCHHHHHHHHHHHHHhcccCCCccccccCCCcc
Confidence 88887 89999999997 899999999999887 776678999 9999999999999998543 221
Q ss_pred CChhHHHHHHHHhchhCh
Q 002379 286 FCPGIVLELLSFANRFCC 303 (929)
Q Consensus 286 ~~~~~~~~ll~~A~~~~~ 303 (929)
++.+++.+|+.|||.+.+
T Consensus 82 vd~~~lfeLi~AAnyLdI 99 (99)
T 1hv2_A 82 IPTEMSLELLLAADYLSI 99 (99)
T ss_dssp CCHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHhCc
Confidence 788999999999998865
No 225
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.55 E-value=4e-07 Score=80.95 Aligned_cols=80 Identities=18% Similarity=0.086 Sum_probs=51.1
Q ss_pred cHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHH-HHHHHHHHcCCHHHHHHHHHHHhccCCCC------HHHHHH
Q 002379 844 TYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLH-LRAAFYESIGDLTSAIRDSQAALCLDPNH------METLDL 916 (929)
Q Consensus 844 ~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~-~la~~~~~~g~~~~A~~~~~~al~l~P~~------~~a~~~ 916 (929)
+.++..+|.++...|++++|++.|+++++.+|+++..+ .+|.++..+|++++|+..|+++++++|++ ..++..
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR 83 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 34566666666666666666666666666666665433 55666666666666666666666666666 555555
Q ss_pred HHHHHhh
Q 002379 917 YNRARDQ 923 (929)
Q Consensus 917 ~~~l~~~ 923 (929)
++.+...
T Consensus 84 ~~~~~~~ 90 (111)
T 2l6j_A 84 LELAQGA 90 (111)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555443
No 226
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.52 E-value=1.2e-07 Score=84.34 Aligned_cols=83 Identities=10% Similarity=0.071 Sum_probs=72.4
Q ss_pred ChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch-------HHHH
Q 002379 639 KSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-------EAFF 711 (929)
Q Consensus 639 ~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-------~~~~ 711 (929)
++..+..+|.++...|++++|+..|+++++.+|+++.++.++|.++...|++++|+..++++++++|++ .+++
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 456789999999999999999999999999999999999999999999999999999999999999985 3444
Q ss_pred HHHHHHHhcC
Q 002379 712 LKAYILADTN 721 (929)
Q Consensus 712 ~l~~~l~~~~ 721 (929)
.++.++...+
T Consensus 83 ~~~~~~~~~~ 92 (111)
T 2l6j_A 83 RLELAQGAVG 92 (111)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555544433
No 227
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.52 E-value=6e-07 Score=83.69 Aligned_cols=101 Identities=8% Similarity=0.015 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcC-C-C-chHHHHHHHHHHHcCCHHHHHHH
Q 002379 826 REMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQ---KEVEAVEELSKAIAFK-P-D-LQMLHLRAAFYESIGDLTSAIRD 899 (929)
Q Consensus 826 ~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g---~~~eA~~~l~kal~~~-p-~-~~~~~~la~~~~~~g~~~~A~~~ 899 (929)
...+.+.|.+.++.+|.+.++.+.+|+++.+.+ +.++++..++..++.+ | + ...+|++|..|.++|+|++|+++
T Consensus 14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 356677888888888999999999999999988 6779999999999998 6 2 35778999999999999999999
Q ss_pred HHHHhccCCCCHHHHHHHHHHHhhhhh
Q 002379 900 SQAALCLDPNHMETLDLYNRARDQASH 926 (929)
Q Consensus 900 ~~~al~l~P~~~~a~~~~~~l~~~~~~ 926 (929)
++++|+++|+|.++..+...+.....+
T Consensus 94 ~~~lL~ieP~n~QA~~Lk~~ie~~~~k 120 (152)
T 1pc2_A 94 VRGLLQTEPQNNQAKELERLIDKAMKK 120 (152)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999877643
No 228
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.51 E-value=9.2e-07 Score=82.81 Aligned_cols=119 Identities=14% Similarity=0.115 Sum_probs=78.0
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHhhhCCHHHHHHHHHHHHhcCC
Q 002379 762 GKLDQAENCYINALDIKHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDP 841 (929)
Q Consensus 762 g~~~eA~~~~~~al~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~g~~~~A~~~~~~al~l~p 841 (929)
+++++|+.+|+++.+.+++.+. +|.+|...+..++|+..|+++.+.
T Consensus 9 ~d~~~A~~~~~~aa~~g~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~-------------------------------- 54 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEMFGC--LSLVSNSQINKQKLFQYLSKACEL-------------------------------- 54 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCTTHH--HHHHTCTTSCHHHHHHHHHHHHHT--------------------------------
T ss_pred cCHHHHHHHHHHHHcCCCHhhh--HHHHHHcCCCHHHHHHHHHHHHcC--------------------------------
Confidence 3566777777777777666655 676666666666666655555443
Q ss_pred CCcHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHH----cCCHHHHHHHHHHHhccCCCCHHH
Q 002379 842 LRTYPYRYRAAVLMD----DQKEVEAVEELSKAIAFKPDLQMLHLRAAFYES----IGDLTSAIRDSQAALCLDPNHMET 913 (929)
Q Consensus 842 ~~~~~~~~la~~~~~----~g~~~eA~~~l~kal~~~p~~~~~~~la~~~~~----~g~~~~A~~~~~~al~l~P~~~~a 913 (929)
.++.+++++|.+|.. .+++++|+.+|+++.+. .+....+.+|.+|.. .+|+++|+.+|+++.+. .++++
T Consensus 55 g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~-g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A 131 (138)
T 1klx_A 55 NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL-NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL--GSEDA 131 (138)
T ss_dssp TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHH
T ss_pred CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC-CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC--CCHHH
Confidence 345666777777776 67777777777777765 233445567777777 77777777777777776 34555
Q ss_pred HHHH
Q 002379 914 LDLY 917 (929)
Q Consensus 914 ~~~~ 917 (929)
...+
T Consensus 132 ~~~l 135 (138)
T 1klx_A 132 CGIL 135 (138)
T ss_dssp HHHC
T ss_pred HHHH
Confidence 4443
No 229
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.50 E-value=1.5e-06 Score=81.34 Aligned_cols=110 Identities=15% Similarity=0.106 Sum_probs=90.5
Q ss_pred cCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHHHHHhcCCCCCChHHHHHH
Q 002379 654 NCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQL 733 (929)
Q Consensus 654 g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~l~~~l~~~~~~~~~~~~a~~~ 733 (929)
+++++|+..|+++.+..... +. +|.+|...+..++|+.+|+++.+.. +
T Consensus 9 ~d~~~A~~~~~~aa~~g~~~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~g--~-------------------------- 56 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEMF--GC--LSLVSNSQINKQKLFQYLSKACELN--S-------------------------- 56 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCTT--HH--HHHHTCTTSCHHHHHHHHHHHHHTT--C--------------------------
T ss_pred cCHHHHHHHHHHHHcCCCHh--hh--HHHHHHcCCCHHHHHHHHHHHHcCC--C--------------------------
Confidence 56788999999998876443 33 8999988888888999998888652 1
Q ss_pred HHHHhhchhccCchhHHHHHHHHHHHH----cCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH----hCCHHHHHHHHHH
Q 002379 734 LEEALRCPSDGLRKGQALNNLGSIYVE----CGKLDQAENCYINALDIKHTRAHQGLARVYYL----KNELKAAYDEMTK 805 (929)
Q Consensus 734 ~e~Al~~~~~al~~~~a~~~lg~~~~~----~g~~~eA~~~~~~al~~~~~~a~~~la~~~~~----~g~~~~A~~~~~~ 805 (929)
..+++++|.+|.. .+++++|+.+|+++.+.+++.+.+++|.+|.. .+++++|+..|++
T Consensus 57 --------------~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~ 122 (138)
T 1klx_A 57 --------------GNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEK 122 (138)
T ss_dssp --------------HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred --------------HHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHH
Confidence 4557788888887 78899999999999988888999999999888 8888888888888
Q ss_pred HHHH
Q 002379 806 LLEK 809 (929)
Q Consensus 806 al~~ 809 (929)
+.+.
T Consensus 123 Aa~~ 126 (138)
T 1klx_A 123 ACRL 126 (138)
T ss_dssp HHHT
T ss_pred HHHC
Confidence 8776
No 230
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens}
Probab=98.47 E-value=9e-07 Score=78.16 Aligned_cols=93 Identities=10% Similarity=0.001 Sum_probs=77.4
Q ss_pred EEEEEcCeEEEeehhHHhccC-HHHHHHhcCCCC----cCCCCeeEecCCCCCHHHHHHHhhhHccCCCCCCChh-HHHH
Q 002379 220 VTFCVRDKEISFVRNKIASLS-SPFKAMLYGGFV----ESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFCPG-IVLE 293 (929)
Q Consensus 220 v~~~v~~~~~~~hr~iLaa~S-~~F~~mf~~~~~----e~~~~~i~~~~~~~~~~~~~~~l~~~Yt~~~~~~~~~-~~~~ 293 (929)
|++-|||+.|...+..|+... .+|.+||.++.. ....+++-| |-+|..|+.+|+|+.||++. ++.+ ....
T Consensus 8 v~LNVGG~~f~t~~~TL~~~p~s~L~~~~~~~~~~~~~~d~~~~~fi---DRdp~~F~~IL~~lr~g~l~-~p~~~~~~~ 83 (107)
T 3drz_A 8 VRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLI---DRDPTYFGPVLNYLRHGKLV-INKDLAEEG 83 (107)
T ss_dssp EEEEETTEEEEEEHHHHTSSTTSHHHHHHTTCGGGGGGBCTTSCEEE---CSCHHHHHHHHHHHHHSCCC-CCTTSCHHH
T ss_pred EEEEECCEEEEECHHHHhcCCCcchhHHHhcCCCCCcCCCCCceEEe---cCChHHHHHHHHHhCCCeeC-CCCCCCHHH
Confidence 999999999999999998765 478999987531 123456776 67999999999999999998 5544 3478
Q ss_pred HHHHhchhChHhHHHHHHHHHHh
Q 002379 294 LLSFANRFCCEEMKSACDAHLAS 316 (929)
Q Consensus 294 ll~~A~~~~~~~l~~~C~~~l~~ 316 (929)
++.-|..|+++.|++.|.+.|.+
T Consensus 84 l~~Ea~fy~l~~L~~~l~~~i~~ 106 (107)
T 3drz_A 84 VLEEAEFYNITSLIKLVKDKIRE 106 (107)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHhc
Confidence 99999999999999999998864
No 231
>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B
Probab=98.47 E-value=1.8e-07 Score=80.72 Aligned_cols=81 Identities=31% Similarity=0.412 Sum_probs=63.7
Q ss_pred EEEEE-cCeEEEeehhHHhccCHHHHHHhcC--CCCcCCCCeeEecCCCCCHHHHHHHhhhHccCC--------CCC--C
Q 002379 220 VTFCV-RDKEISFVRNKIASLSSPFKAMLYG--GFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSR--------VDL--F 286 (929)
Q Consensus 220 v~~~v-~~~~~~~hr~iLaa~S~~F~~mf~~--~~~e~~~~~i~~~~~~~~~~~~~~~l~~~Yt~~--------~~~--~ 286 (929)
|+++- +|+.|.++|.+ |..|.+++.||.+ ++.|+..+.|.| ++|+..+++.+++|+|... ++. +
T Consensus 3 v~L~SsDg~~f~V~~~~-A~~S~~ik~ml~~~~~~~e~~~~~Ipl--~~V~~~iL~kVieyc~~h~~~~~~~~~i~~w~v 79 (96)
T 2fnj_C 3 VKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAENETNEVNF--REIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPI 79 (96)
T ss_dssp EEEECTTSCEEEEEHHH-HTTSHHHHHHHHCC--------CEEEC--SSCCHHHHHHHHHHHHHHHHHHSCCSCCCCCCC
T ss_pred EEEEecCCCEEEeCHHH-HHHhHHHHHHHHccCCcccccCCceeC--CCCCHHHHHHHHHHHHHccccCCCcccCCCccc
Confidence 56665 89999999997 8999999999985 447877789999 9999999999999997543 221 7
Q ss_pred ChhHHHHHHHHhchhCh
Q 002379 287 CPGIVLELLSFANRFCC 303 (929)
Q Consensus 287 ~~~~~~~ll~~A~~~~~ 303 (929)
+.+++.+|+.|||.+.|
T Consensus 80 d~~~l~eLi~AAnyLdI 96 (96)
T 2fnj_C 80 APEIALELLMAANFLDC 96 (96)
T ss_dssp CTTTHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhCc
Confidence 88999999999998864
No 232
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.44 E-value=1.8e-06 Score=98.66 Aligned_cols=139 Identities=8% Similarity=-0.089 Sum_probs=108.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHcC-------CCH---HHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHH
Q 002379 751 LNNLGSIYVECGKLDQAENCYINALDI-------KHT---RAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKR 820 (929)
Q Consensus 751 ~~~lg~~~~~~g~~~eA~~~~~~al~~-------~~~---~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 820 (929)
....+..+..+|+|++|+..|++++++ +|+ .++.++|.+|..+|++++|..++++++++.
T Consensus 312 ~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~---------- 381 (490)
T 3n71_A 312 TLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGY---------- 381 (490)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH----------
Confidence 344555677899999999999999987 344 478999999999999999999999998762
Q ss_pred hhhCCHHHHHHHHHHHHh-cCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCCchHHH----HHHHHHHHc
Q 002379 821 SEYSDREMAKNDLNMATQ-LDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAF-----KPDLQMLH----LRAAFYESI 890 (929)
Q Consensus 821 g~~g~~~~A~~~~~~al~-l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~-----~p~~~~~~----~la~~~~~~ 890 (929)
++.+- -.|.....+.++|.+|..+|++++|+..|++|+++ .|+++... +++.++..+
T Consensus 382 -------------~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~ 448 (490)
T 3n71_A 382 -------------MKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMEL 448 (490)
T ss_dssp -------------HHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred -------------HHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHH
Confidence 22211 12344567889999999999999999999999964 57775332 679999999
Q ss_pred CCHHHHHHHHHHHhccCCCCHH
Q 002379 891 GDLTSAIRDSQAALCLDPNHME 912 (929)
Q Consensus 891 g~~~~A~~~~~~al~l~P~~~~ 912 (929)
|.+++|...|+++.+-.-++..
T Consensus 449 ~~~~~ae~~~~~~~~~~~~~~~ 470 (490)
T 3n71_A 449 RMFRQNEFMYHKMREAALNNQP 470 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHhcCCC
Confidence 9999999999998764433333
No 233
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=98.43 E-value=1.1e-06 Score=84.32 Aligned_cols=106 Identities=14% Similarity=0.112 Sum_probs=83.4
Q ss_pred EEEEE-cCeEEEeehhHHhccCHHHHHHhcCCCC----cCCCCeeEecCCCCCHHHHHHHhhhHccCC------------
Q 002379 220 VTFCV-RDKEISFVRNKIASLSSPFKAMLYGGFV----ESKRKTIDFSHDGVSVEGLRAVEVYTRTSR------------ 282 (929)
Q Consensus 220 v~~~v-~~~~~~~hr~iLaa~S~~F~~mf~~~~~----e~~~~~i~~~~~~~~~~~~~~~l~~~Yt~~------------ 282 (929)
|+++- +|+.|.+++.+ |..|..++.|+.+... +.....|.| ++|+..+++.|++|++...
T Consensus 9 i~L~SsDG~~F~V~~~v-A~~S~tIk~ml~~~~~~~~~~~~~~~Ipl--pnV~s~iL~kVieyc~~h~~~~~~~~~~~~~ 85 (169)
T 3v7d_A 9 VVLVSGEGERFTVDKKI-AERSLLLKNYLNDMGDDDDEDDDEIVMPV--PNVRSSVLQKVIEWAEHHRDSNFPDEDDDDS 85 (169)
T ss_dssp EEEECTTCCEEEEEHHH-HTTSHHHHHHHHC-----------CEEEC--TTCCHHHHHHHHHHHHHTTTCCCCC------
T ss_pred EEEEeCCCCEEEecHHH-HHHhHHHHHHHHhcCcccccccCCCceee--CCCCHHHHHHHHHHHHHcccCCCcccccccc
Confidence 77765 79999999998 7899999999975333 234478999 9999999999999997543
Q ss_pred -------------CCCCChhHHHHHHHHhchhChHhHHHHHHHHHHhhcC--ChhhHHHHHH
Q 002379 283 -------------VDLFCPGIVLELLSFANRFCCEEMKSACDAHLASLVG--DIEDALILID 329 (929)
Q Consensus 283 -------------~~~~~~~~~~~ll~~A~~~~~~~l~~~C~~~l~~~~~--~~~n~~~~~~ 329 (929)
+. ++.+++.+|+.|||.++|..|...|++.++..+. |++-.-.++.
T Consensus 86 ~~~~~i~~wD~~Fl~-vd~~~LfeLi~AAnyLdIk~Lldl~c~~vA~~ikgktpeeiR~~f~ 146 (169)
T 3v7d_A 86 RKSAPVDSWDREFLK-VDQEMLYEIILAANYLNIKPLLDAGCKVVAEMIRGRSPEEIRRTFN 146 (169)
T ss_dssp --CCCCCHHHHHHTC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCHHHHHHHHT
T ss_pred cccccccHHHHHHHc-CCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHcCCCHHHHHHHcC
Confidence 22 6778999999999999999999999999998886 3444444433
No 234
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.41 E-value=8.1e-06 Score=87.82 Aligned_cols=143 Identities=9% Similarity=-0.002 Sum_probs=99.6
Q ss_pred HHHHHHHHHHh---ccHHHHHHHHHHHHhhcCCchhhhccccHHHHHHHHHHhh---cccchHHHHHHhhhccccccccc
Q 002379 551 LELRAWLFIAA---DDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHV---RSWSPADCWIKLYDRWSSVDDIG 624 (929)
Q Consensus 551 ~~~~a~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~ll~~~~~~~---~~~~~A~~~l~l~~~~~~~~~~~ 624 (929)
++.+|..++.. .+..+|+..|+++++++|++. .++..++.++... +.+... ....+. .
T Consensus 199 l~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a------~A~A~la~a~~~~~~~~~~~~~-~~~~l~---------~ 262 (372)
T 3ly7_A 199 NFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFT------YARAEKALVDIVRHSQHPLDEK-QLAALN---------T 262 (372)
T ss_dssp HHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHHHHHHSCCCHH-HHHHHH---------H
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHHhccCCCchh-hHHHHH---------H
Confidence 44555555443 345778888888888888887 3343344444211 101100 000000 0
Q ss_pred cHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 002379 625 SLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIE 704 (929)
Q Consensus 625 ~l~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~ 704 (929)
.+. -..++..+|.++.++..++..+...|++++|+..+++|+.++|+ ...+..+|.++...|++++|++.|++|+.++
T Consensus 263 a~~-a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~ 340 (372)
T 3ly7_A 263 EID-NIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLR 340 (372)
T ss_dssp HHH-HHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHH-HHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 011 01234567999999999999999999999999999999999976 6788999999999999999999999999999
Q ss_pred cchHHHH
Q 002379 705 RTFEAFF 711 (929)
Q Consensus 705 p~~~~~~ 711 (929)
|..+.++
T Consensus 341 P~~~t~~ 347 (372)
T 3ly7_A 341 PGANTLY 347 (372)
T ss_dssp CSHHHHH
T ss_pred CCcChHH
Confidence 9884433
No 235
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.41 E-value=1.5e-06 Score=89.49 Aligned_cols=86 Identities=13% Similarity=0.005 Sum_probs=72.7
Q ss_pred CHHHHHHHHHHHHhcCCC--CcHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhcCCCc-h-HHHHHHHHHHH-cCCHH
Q 002379 825 DREMAKNDLNMATQLDPL--RTYPYRYRAAVLMDD-----QKEVEAVEELSKAIAFKPDL-Q-MLHLRAAFYES-IGDLT 894 (929)
Q Consensus 825 ~~~~A~~~~~~al~l~p~--~~~~~~~la~~~~~~-----g~~~eA~~~l~kal~~~p~~-~-~~~~la~~~~~-~g~~~ 894 (929)
...+|...++++++++|+ +..+|..+|.+|... |+.++|.+.|+++++++|+. . ..+..|..+.. +|+++
T Consensus 178 ~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 178 TVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 347888899999999998 667999999999885 89999999999999999964 4 44467888877 59999
Q ss_pred HHHHHHHHHhccCCCC
Q 002379 895 SAIRDSQAALCLDPNH 910 (929)
Q Consensus 895 ~A~~~~~~al~l~P~~ 910 (929)
+|.+.+++|+..+|..
T Consensus 258 ~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 258 GFDEALDRALAIDPES 273 (301)
T ss_dssp HHHHHHHHHHHCCGGG
T ss_pred HHHHHHHHHHcCCCCC
Confidence 9999999999988773
No 236
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.40 E-value=3.5e-06 Score=90.62 Aligned_cols=82 Identities=18% Similarity=0.111 Sum_probs=71.0
Q ss_pred HHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHH
Q 002379 836 ATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLHLRAAFYESIGDLTSAIRDSQAALCLDPNHMETLD 915 (929)
Q Consensus 836 al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~ 915 (929)
++..+|..+.++..+|..+...|++++|+..+++++.++|+...+..+|.++...|++++|++.|++|+.++|..+ ++.
T Consensus 269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~-t~~ 347 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN-TLY 347 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH-HHH
T ss_pred hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC-hHH
Confidence 4467789999999999999889999999999999999998755555779999999999999999999999999875 555
Q ss_pred HHH
Q 002379 916 LYN 918 (929)
Q Consensus 916 ~~~ 918 (929)
+..
T Consensus 348 ~~~ 350 (372)
T 3ly7_A 348 WIE 350 (372)
T ss_dssp HHH
T ss_pred HHh
Confidence 544
No 237
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.36 E-value=7.1e-06 Score=84.55 Aligned_cols=82 Identities=7% Similarity=-0.013 Sum_probs=75.0
Q ss_pred HHHHHHHHhcCCC--ChHHHHHHHHHHHHh-----cCHHHHHHHHHHHHhcCCch-HHHHHHHHHHHHH-cCCHHHHHHH
Q 002379 626 LAVINQMLINDPG--KSFLRFRQSLLLLRL-----NCQKAAMRCLRLARNHSSSE-HERLVYEGWILYD-TGHREEALSR 696 (929)
Q Consensus 626 l~~~~~al~~~p~--~~~~~~~lg~~~~~~-----g~~~~A~~~l~~al~~~p~~-~~~~~~lg~~~~~-~g~~~eA~~~ 696 (929)
...++++++++|+ +..+|..+|.+|... |+.++|.++|++|++++|+. ...++.+|..+.. .|++++|...
T Consensus 183 ~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~ 262 (301)
T 3u64_A 183 VMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEA 262 (301)
T ss_dssp HHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHH
T ss_pred HHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHH
Confidence 4456999999999 778999999999995 99999999999999999975 9999999999988 4999999999
Q ss_pred HHHHHhhccch
Q 002379 697 AEKSISIERTF 707 (929)
Q Consensus 697 ~~~al~~~p~~ 707 (929)
++++++..|..
T Consensus 263 L~kAL~a~p~~ 273 (301)
T 3u64_A 263 LDRALAIDPES 273 (301)
T ss_dssp HHHHHHCCGGG
T ss_pred HHHHHcCCCCC
Confidence 99999998873
No 238
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.35 E-value=3.4e-07 Score=79.86 Aligned_cols=81 Identities=19% Similarity=0.163 Sum_probs=49.7
Q ss_pred CCHHHHHHHHHHHHhcCCCCcH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHcCCHHHHHHHHHH
Q 002379 824 SDREMAKNDLNMATQLDPLRTY-PYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLHLRAAFYESIGDLTSAIRDSQA 902 (929)
Q Consensus 824 g~~~~A~~~~~~al~l~p~~~~-~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~ 902 (929)
|++++|+..|+++++.+|.++. +++.+|.++...|++++|++.|+++++++|++...+.. +.+.+|+..|++
T Consensus 14 ~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-------~~~~~a~~~~~~ 86 (99)
T 2kc7_A 14 GDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR-------KMVMDILNFYNK 86 (99)
T ss_dssp TCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH-------HHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH-------HHHHHHHHHHHH
Confidence 3334444444444444555555 66667777777777777777777777777776654422 456666777777
Q ss_pred HhccCCCCH
Q 002379 903 ALCLDPNHM 911 (929)
Q Consensus 903 al~l~P~~~ 911 (929)
++..+|+++
T Consensus 87 ~~~~~p~~~ 95 (99)
T 2kc7_A 87 DMYNQLEHH 95 (99)
T ss_dssp TTHHHHCCS
T ss_pred HhccCcccc
Confidence 777666654
No 239
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.27 E-value=4.4e-06 Score=71.90 Aligned_cols=83 Identities=14% Similarity=0.043 Sum_probs=69.5
Q ss_pred CCCCcHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCchHHH-HHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHH
Q 002379 840 DPLRTYPYRYRAAVLMDDQK---EVEAVEELSKAIAFKPDLQMLH-LRAAFYESIGDLTSAIRDSQAALCLDPNHMETLD 915 (929)
Q Consensus 840 ~p~~~~~~~~la~~~~~~g~---~~eA~~~l~kal~~~p~~~~~~-~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~ 915 (929)
+|.++..+..+|.+++..++ .++|...++++++.+|+++... ++|..+...|++++|+..|+++++.+|.++....
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~~~~ 81 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLDRVT 81 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCCHHH
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHH
Confidence 57888999999998875554 7999999999999999997655 6799999999999999999999999998766666
Q ss_pred HHHHHHh
Q 002379 916 LYNRARD 922 (929)
Q Consensus 916 ~~~~l~~ 922 (929)
+...|..
T Consensus 82 i~~~I~~ 88 (93)
T 3bee_A 82 IIESINK 88 (93)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666554
No 240
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.25 E-value=3.6e-06 Score=72.46 Aligned_cols=72 Identities=10% Similarity=-0.092 Sum_probs=68.2
Q ss_pred CCCChHHHHHHHHHHHHhcC---HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch
Q 002379 636 DPGKSFLRFRQSLLLLRLNC---QKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF 707 (929)
Q Consensus 636 ~p~~~~~~~~lg~~~~~~g~---~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~ 707 (929)
+|+++.++..+|.+++..++ .++|...++++++.+|+++.+++.+|..+++.|+|++|+..++++++.+|..
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 68999999999999987776 7999999999999999999999999999999999999999999999999874
No 241
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.24 E-value=5.4e-06 Score=71.99 Aligned_cols=67 Identities=12% Similarity=0.099 Sum_probs=63.6
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCCchHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhccch-HHH
Q 002379 644 FRQSLLLLRLNCQKAAMRCLRLARNHSSSEHE-RLVYEGWILYDTGHREEALSRAEKSISIERTF-EAF 710 (929)
Q Consensus 644 ~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~-~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~~~ 710 (929)
+.+|..+...|++++|+..|+++++.+|+++. ++..+|.++...|++++|+..|+++++++|++ .++
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 57899999999999999999999999999999 99999999999999999999999999999998 555
No 242
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.19 E-value=1.2e-05 Score=70.81 Aligned_cols=84 Identities=15% Similarity=0.038 Sum_probs=70.8
Q ss_pred CcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-------Cch-HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHH
Q 002379 843 RTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKP-------DLQ-MLHLRAAFYESIGDLTSAIRDSQAALCLDPNHMETL 914 (929)
Q Consensus 843 ~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p-------~~~-~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~ 914 (929)
.+.-.+.+|..++..|+|..|+.+|++|++..+ ... .+..+|.++.++|++++|+..++++++++|+++.+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 456678999999999999999999999998631 223 344789999999999999999999999999999998
Q ss_pred HHHHHHHhhhhh
Q 002379 915 DLYNRARDQASH 926 (929)
Q Consensus 915 ~~~~~l~~~~~~ 926 (929)
.++..++....+
T Consensus 84 ~n~~~~~~~~~~ 95 (104)
T 2v5f_A 84 GNLKYFEYIMAK 95 (104)
T ss_dssp HHHHHHHHHHHH
T ss_pred hhHHHHHHHHHh
Confidence 888777665543
No 243
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.15 E-value=1.1e-05 Score=90.50 Aligned_cols=100 Identities=10% Similarity=0.005 Sum_probs=80.3
Q ss_pred hCCHHHHHHHHHHHHhc-----CCCC---cHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCCch----HHHHHHH
Q 002379 823 YSDREMAKNDLNMATQL-----DPLR---TYPYRYRAAVLMDDQKEVEAVEELSKAIAF-----KPDLQ----MLHLRAA 885 (929)
Q Consensus 823 ~g~~~~A~~~~~~al~l-----~p~~---~~~~~~la~~~~~~g~~~eA~~~l~kal~~-----~p~~~----~~~~la~ 885 (929)
.|++++|+..+++++++ .|++ ...+.++|.+|..+|+|++|+.++++++++ .|+++ .++++|.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 45666666666666653 3333 456789999999999999999999999964 45554 3447899
Q ss_pred HHHHcCCHHHHHHHHHHHhcc-----CCCCHHHHHHHHHHHh
Q 002379 886 FYESIGDLTSAIRDSQAALCL-----DPNHMETLDLYNRARD 922 (929)
Q Consensus 886 ~~~~~g~~~~A~~~~~~al~l-----~P~~~~a~~~~~~l~~ 922 (929)
+|..+|++++|+..|++|+++ .|+|+.+..++..+++
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~l~~ 432 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEIES 432 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHC
T ss_pred HHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHhc
Confidence 999999999999999999985 8999999998887764
No 244
>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1
Probab=98.04 E-value=6.6e-06 Score=72.80 Aligned_cols=81 Identities=31% Similarity=0.402 Sum_probs=63.6
Q ss_pred EEEE-EcCeEEEeehhHHhccCHHHHHHhcC--CCCcCCCCeeEecCCCCCHHHHHHHhhhHccCC--------CC--CC
Q 002379 220 VTFC-VRDKEISFVRNKIASLSSPFKAMLYG--GFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSR--------VD--LF 286 (929)
Q Consensus 220 v~~~-v~~~~~~~hr~iLaa~S~~F~~mf~~--~~~e~~~~~i~~~~~~~~~~~~~~~l~~~Yt~~--------~~--~~ 286 (929)
|+++ -+|+.|.++|. +|..|..++.||.+ ++.|+..+.|.| ++|+..+++.|++|++... ++ .+
T Consensus 19 v~L~SsDG~~F~V~~~-~A~~S~tIk~ml~~~~~~~e~~~~~Ipl--pnV~s~iL~kVieyc~~h~~~~~~~~~i~~w~v 95 (112)
T 1vcb_B 19 VKLISSDGHEFIVKRE-HALTSGTIKAMLSGPGQFAENETNEVNF--REIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPI 95 (112)
T ss_dssp EEEECTTSCEEEEEHH-HHHTSHHHHHHSSCC--------CEEEC--SSCCHHHHHHHHHHHHHHHHHSSCSSCCCCCCC
T ss_pred EEEEcCCCCEEEECHH-HHHHhHHHHHHHHhcCCcccccCCceeC--CCCCHHHHHHHHHHHHHhhhccCCcCCCCCccc
Confidence 8887 48999999999 47899999999984 456776778999 9999999999999996432 22 18
Q ss_pred ChhHHHHHHHHhchhCh
Q 002379 287 CPGIVLELLSFANRFCC 303 (929)
Q Consensus 287 ~~~~~~~ll~~A~~~~~ 303 (929)
+.+++++|+.+||.+.|
T Consensus 96 d~~~lfeLi~AAnyLdI 112 (112)
T 1vcb_B 96 APEIALELLMAANFLDC 112 (112)
T ss_dssp CHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhCc
Confidence 88999999999999865
No 245
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=98.04 E-value=3.5e-05 Score=69.05 Aligned_cols=100 Identities=8% Similarity=0.024 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHH---HHHHHHHHHhcC-CCc--hHHHHHHHHHHHcCCHHHHHHHH
Q 002379 827 EMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVE---AVEELSKAIAFK-PDL--QMLHLRAAFYESIGDLTSAIRDS 900 (929)
Q Consensus 827 ~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~e---A~~~l~kal~~~-p~~--~~~~~la~~~~~~g~~~~A~~~~ 900 (929)
..+...|.+....++....+.+.+|+++....+..+ ++..++..+... |.. ..+|.+|..+.+.|+|++|+.++
T Consensus 18 ~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~ 97 (126)
T 1nzn_A 18 LKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYV 97 (126)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 455667777777788899999999999999987776 999999998876 422 46778999999999999999999
Q ss_pred HHHhccCCCCHHHHHHHHHHHhhhhh
Q 002379 901 QAALCLDPNHMETLDLYNRARDQASH 926 (929)
Q Consensus 901 ~~al~l~P~~~~a~~~~~~l~~~~~~ 926 (929)
+.+|+.+|+|..+..+...|.....+
T Consensus 98 ~~lL~~eP~n~QA~~Lk~~i~~~i~k 123 (126)
T 1nzn_A 98 RGLLQTEPQNNQAKELERLIDKAMKK 123 (126)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999999877643
No 246
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.98 E-value=3.3e-05 Score=71.97 Aligned_cols=85 Identities=13% Similarity=0.035 Sum_probs=75.9
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHhc---CHHHHHHHHHHHHhcC-C-chHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002379 627 AVINQMLINDPGKSFLRFRQSLLLLRLN---CQKAAMRCLRLARNHS-S-SEHERLVYEGWILYDTGHREEALSRAEKSI 701 (929)
Q Consensus 627 ~~~~~al~~~p~~~~~~~~lg~~~~~~g---~~~~A~~~l~~al~~~-p-~~~~~~~~lg~~~~~~g~~~eA~~~~~~al 701 (929)
..|.+.+..+|.+..+.+++|.++.+.+ +.++++..++..++.+ | +..+.++++|..+++.|+|++|+.++++++
T Consensus 19 ~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL 98 (152)
T 1pc2_A 19 KKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLL 98 (152)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 3456777788999999999999999988 6779999999999998 7 568999999999999999999999999999
Q ss_pred hhccch-HHHH
Q 002379 702 SIERTF-EAFF 711 (929)
Q Consensus 702 ~~~p~~-~~~~ 711 (929)
+++|++ .+..
T Consensus 99 ~ieP~n~QA~~ 109 (152)
T 1pc2_A 99 QTEPQNNQAKE 109 (152)
T ss_dssp HHCTTCHHHHH
T ss_pred hcCCCCHHHHH
Confidence 999998 4443
No 247
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.90 E-value=9.5e-05 Score=83.05 Aligned_cols=112 Identities=17% Similarity=0.078 Sum_probs=84.3
Q ss_pred HHHHHhcCHHHHHHHHHHHHhc-----CCch---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Q 002379 648 LLLLRLNCQKAAMRCLRLARNH-----SSSE---HERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILAD 719 (929)
Q Consensus 648 ~~~~~~g~~~~A~~~l~~al~~-----~p~~---~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~l~~~l~~ 719 (929)
.-+..+|++++|+..+++++++ .|++ ...+.++|.+|..+|+|++|+.++++++.+....
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~------------ 362 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIF------------ 362 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH------------
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHH------------
Confidence 3456789999999999999975 3343 5678899999999999999999999999764221
Q ss_pred cCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC-------CCHH---HHHHHHHH
Q 002379 720 TNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI-------KHTR---AHQGLARV 789 (929)
Q Consensus 720 ~~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~-------~~~~---a~~~la~~ 789 (929)
..+.... .+..++++|.+|..+|++++|+..|++|+++ +|+. ++.+++.+
T Consensus 363 --lg~~Hp~------------------~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~ 422 (429)
T 3qwp_A 363 --FPGSHPV------------------RGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEEC 422 (429)
T ss_dssp --SCSSCHH------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHH
T ss_pred --cCCCChH------------------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 0111111 1456999999999999999999999999987 4553 44555555
Q ss_pred HH
Q 002379 790 YY 791 (929)
Q Consensus 790 ~~ 791 (929)
..
T Consensus 423 ~~ 424 (429)
T 3qwp_A 423 DA 424 (429)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 248
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.89 E-value=6.1e-05 Score=84.50 Aligned_cols=94 Identities=15% Similarity=0.107 Sum_probs=74.8
Q ss_pred HhcCHHHHHHHHHHHHhc-----CCch---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHHHHHhcCCC
Q 002379 652 RLNCQKAAMRCLRLARNH-----SSSE---HERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLD 723 (929)
Q Consensus 652 ~~g~~~~A~~~l~~al~~-----~p~~---~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~l~~~l~~~~~~ 723 (929)
..|+|++|+..+++++++ .|++ ...+.++|.+|..+|+|++|+.++++++++.... ..
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~--------------lG 375 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKH--------------YP 375 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--------------SC
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHH--------------cC
Confidence 458999999999999874 4444 5678899999999999999999999999764211 11
Q ss_pred CCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC
Q 002379 724 PESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI 777 (929)
Q Consensus 724 ~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~ 777 (929)
+.... .+..++++|.+|..+|++++|+..|++|+++
T Consensus 376 ~~Hp~------------------~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 376 VYSLN------------------VASMWLKLGRLYMGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp SSCHH------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCChH------------------HHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 11111 1456999999999999999999999999987
No 249
>2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.89 E-value=4.4e-06 Score=73.64 Aligned_cols=48 Identities=10% Similarity=0.069 Sum_probs=45.4
Q ss_pred HhhcCChhhHHHHHHHHHHhChHHHHHHHHHHHHhchhhhcCccchhhh
Q 002379 315 ASLVGDIEDALILIDYGLEERATLLVASCLQVLLRELPSSLYNPKVMKI 363 (929)
Q Consensus 315 ~~~~~~~~n~~~~~~~a~~~~~~~L~~~c~~~i~~~~~~v~~~~~f~~L 363 (929)
.+.++ ++||+.++.+|+.|+|++|.+.|.+||.+||.+++++++|.+|
T Consensus 5 ~~~L~-~~NCl~i~~~A~~~~~~~L~~~a~~fi~~nF~~v~~~~eFl~L 52 (105)
T 2eqx_A 5 SSGVQ-VGNCLQVMWLADRHSDPELYTAAKHCAKTHLAQLQNTEEFLHL 52 (105)
T ss_dssp CCCCC-TTTHHHHHHHHHHTTCHHHHHHHHHHHHHTCHHHHTSHHHHHS
T ss_pred hccCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcccHhhC
Confidence 45677 9999999999999999999999999999999999999999887
No 250
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.87 E-value=9e-05 Score=65.20 Aligned_cols=76 Identities=13% Similarity=0.037 Sum_probs=66.9
Q ss_pred ChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-------CchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch-HHH
Q 002379 639 KSFLRFRQSLLLLRLNCQKAAMRCLRLARNHS-------SSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAF 710 (929)
Q Consensus 639 ~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~-------p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~~~ 710 (929)
++.-.+.+|..++..|+|..|+..|+.|++.. +..+.++..+|.++++.|++++|+..++++++++|++ .+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 45667899999999999999999999999863 4568899999999999999999999999999999999 655
Q ss_pred HHHH
Q 002379 711 FLKA 714 (929)
Q Consensus 711 ~~l~ 714 (929)
.++.
T Consensus 84 ~n~~ 87 (104)
T 2v5f_A 84 GNLK 87 (104)
T ss_dssp HHHH
T ss_pred hhHH
Confidence 5554
No 251
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.79 E-value=8.5e-05 Score=83.46 Aligned_cols=81 Identities=10% Similarity=-0.040 Sum_probs=68.5
Q ss_pred cHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCCch----HHHHHHHHHHHcCCHHHHHHHHHHHhcc-----CCC
Q 002379 844 TYPYRYRAAVLMDDQKEVEAVEELSKAIAF-----KPDLQ----MLHLRAAFYESIGDLTSAIRDSQAALCL-----DPN 909 (929)
Q Consensus 844 ~~~~~~la~~~~~~g~~~eA~~~l~kal~~-----~p~~~----~~~~la~~~~~~g~~~~A~~~~~~al~l-----~P~ 909 (929)
...+.++|.+|..+|+|++|+.++++++++ .|+++ .++++|.+|..+|++++|+..|++|+++ .|+
T Consensus 329 ~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~ 408 (429)
T 3qwp_A 329 LKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGRE 408 (429)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 456788999999999999999999999964 45554 3447899999999999999999999975 899
Q ss_pred CHHHHHHHHHHHhhh
Q 002379 910 HMETLDLYNRARDQA 924 (929)
Q Consensus 910 ~~~a~~~~~~l~~~~ 924 (929)
|+.+...+..+.+..
T Consensus 409 Hp~~~~~~~~l~~~~ 423 (429)
T 3qwp_A 409 HSLIEDLILLLEECD 423 (429)
T ss_dssp SHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHH
Confidence 999998877766543
No 252
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A
Probab=97.69 E-value=0.00012 Score=70.89 Aligned_cols=97 Identities=9% Similarity=-0.006 Sum_probs=76.9
Q ss_pred CCCC-EEEEEcCeEEEeehhHHhccC-HHHHHHhcCCC--C--cCCCCeeEecCCCCCHHHHHHHhhhHccCCCCCCChh
Q 002379 216 EDDS-VTFCVRDKEISFVRNKIASLS-SPFKAMLYGGF--V--ESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFCPG 289 (929)
Q Consensus 216 ~~~~-v~~~v~~~~~~~hr~iLaa~S-~~F~~mf~~~~--~--e~~~~~i~~~~~~~~~~~~~~~l~~~Yt~~~~~~~~~ 289 (929)
..+. |++-|||..|...+..|.... .+|..||.+.. . ....+.+-| |-+|..|+.||+|+.||++. ++.+
T Consensus 9 ~~~~~V~LNVGG~~F~Tt~sTL~r~PdS~L~~lfs~~~~~~~~~De~geyFI---DRDP~~F~~ILnyLRtG~L~-lP~~ 84 (202)
T 3drx_A 9 SVSKWVRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLI---DRDPTYFGPVLNYLRHGKLV-INKD 84 (202)
T ss_dssp CCCCEEEEEETTEEEEEETTGGGSCTTSSTHHHHSCCCC----BCTTCCEEE---CSCSTTHHHHHHHHHHSCCC-CCTT
T ss_pred CCCCEEEEEECCEEEEEeHHHHhCCCcchHHHHhcCccccCcccCCCccEEe---cCChHHHHHHHHHhcCCccC-CCCC
Confidence 3345 999999999999999998653 37899998652 1 113456777 56899999999999999998 5544
Q ss_pred -HHHHHHHHhchhChHhHHHHHHHHHHh
Q 002379 290 -IVLELLSFANRFCCEEMKSACDAHLAS 316 (929)
Q Consensus 290 -~~~~ll~~A~~~~~~~l~~~C~~~l~~ 316 (929)
....++.-|+.|+|+.|.+.|.+.|.+
T Consensus 85 ~~~~~l~eEA~FygL~~Lv~~l~~~i~e 112 (202)
T 3drx_A 85 LAEEGVLEEAEFYNITSLIKLVKDKIRE 112 (202)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHCCcHHHHHHHHHHHHH
Confidence 236788999999999999999988864
No 253
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=97.49 E-value=0.00078 Score=60.40 Aligned_cols=85 Identities=14% Similarity=0.017 Sum_probs=75.2
Q ss_pred CCcHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCc--hHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHH
Q 002379 842 LRTYPYRYRAAVLMDDQK---EVEAVEELSKAIAFKPDL--QMLHLRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDL 916 (929)
Q Consensus 842 ~~~~~~~~la~~~~~~g~---~~eA~~~l~kal~~~p~~--~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~ 916 (929)
-.+.+.+++|+++.+..+ ..+++..++..++..|.. ..+|.+|..+.++|+|++|.++.+.+|+++|+|..+..+
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~L 117 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL 117 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHH
Confidence 467889999999998875 457999999999988854 577899999999999999999999999999999999999
Q ss_pred HHHHHhhhhh
Q 002379 917 YNRARDQASH 926 (929)
Q Consensus 917 ~~~l~~~~~~ 926 (929)
...|..+..+
T Consensus 118 k~~Ie~ki~k 127 (134)
T 3o48_A 118 KSMVEDKIQK 127 (134)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999877654
No 254
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.45 E-value=0.0015 Score=59.38 Aligned_cols=86 Identities=13% Similarity=-0.004 Sum_probs=76.1
Q ss_pred CCCcHHHHHHHHHHHhcCCH---HHHHHHHHHHHhcCCCc--hHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHH
Q 002379 841 PLRTYPYRYRAAVLMDDQKE---VEAVEELSKAIAFKPDL--QMLHLRAAFYESIGDLTSAIRDSQAALCLDPNHMETLD 915 (929)
Q Consensus 841 p~~~~~~~~la~~~~~~g~~---~eA~~~l~kal~~~p~~--~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~ 915 (929)
.-.+.+.+++|+++....+. .+++..++..+...|.. ..+|.+|..+.++|+|++|.++.+..|+.+|+|..+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 56788999999999988754 57999999999988854 57789999999999999999999999999999999999
Q ss_pred HHHHHHhhhhh
Q 002379 916 LYNRARDQASH 926 (929)
Q Consensus 916 ~~~~l~~~~~~ 926 (929)
+...|..+..+
T Consensus 116 Lk~~Ie~~i~k 126 (144)
T 1y8m_A 116 LKSMVEDKIQK 126 (144)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999877643
No 255
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=97.42 E-value=0.0054 Score=70.29 Aligned_cols=162 Identities=14% Similarity=0.052 Sum_probs=123.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHcC--C-CHHHHHHHHHHHHHhC---------CHHHHHHHHHHHHHHcc-CCHH
Q 002379 749 QALNNLGSIYVECGKLDQAENCYINALDI--K-HTRAHQGLARVYYLKN---------ELKAAYDEMTKLLEKAQ-YSAS 815 (929)
Q Consensus 749 ~a~~~lg~~~~~~g~~~eA~~~~~~al~~--~-~~~a~~~la~~~~~~g---------~~~~A~~~~~~al~~~p-~~~~ 815 (929)
..+..+-..+.+.|++++|++.|+++.+. . +..+|..+-.++...+ ..++|.+.|++.....- .+..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 44666667888999999999999998876 2 3456666666665544 36889999988876531 1333
Q ss_pred HHHHH----hhhCCHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHH
Q 002379 816 AFEKR----SEYSDREMAKNDLNMATQLD-PLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAF--KPDLQMLHLRAAFYE 888 (929)
Q Consensus 816 ~~~~l----g~~g~~~~A~~~~~~al~l~-p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~--~p~~~~~~~la~~~~ 888 (929)
.|..+ +..|+.++|...|++..+.. .-+...|..+-..|.+.|+.++|.+.|++..+. .|+...+..+-..|.
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 33332 37799999999999887653 236778888999999999999999999998764 677777888888899
Q ss_pred HcCCHHHHHHHHHHHhc--cCCCC
Q 002379 889 SIGDLTSAIRDSQAALC--LDPNH 910 (929)
Q Consensus 889 ~~g~~~~A~~~~~~al~--l~P~~ 910 (929)
+.|+.++|.+.+++..+ ..|+.
T Consensus 187 ~~g~~d~A~~ll~~Mr~~g~~ps~ 210 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRDLVRQVSK 210 (501)
T ss_dssp HTTCHHHHHHHHHHHHHHTSSBCH
T ss_pred hCCCHHHHHHHHHHHHHhCCCcCH
Confidence 99999999999998765 45653
No 256
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=97.29 E-value=0.0045 Score=70.99 Aligned_cols=155 Identities=11% Similarity=-0.013 Sum_probs=123.0
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHhh--ccchHH
Q 002379 643 RFRQSLLLLRLNCQKAAMRCLRLARNH--SSSEHERLVYEGWILYDTGH---------REEALSRAEKSISI--ERTFEA 709 (929)
Q Consensus 643 ~~~lg~~~~~~g~~~~A~~~l~~al~~--~p~~~~~~~~lg~~~~~~g~---------~~eA~~~~~~al~~--~p~~~~ 709 (929)
+...-..+.+.|+.++|++.|+++.+. .|+ ...|..+-.++...+. .++|.+.|++.... .|+...
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd-~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t 107 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLS-QYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT 107 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCC-HHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence 445556778899999999999998875 343 5566666666655443 68899999987764 466688
Q ss_pred HHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccC----ch-hHHHHHHHHHHHHcCCHHHHHHHHHHHHcC---CCHH
Q 002379 710 FFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGL----RK-GQALNNLGSIYVECGKLDQAENCYINALDI---KHTR 781 (929)
Q Consensus 710 ~~~l~~~l~~~~~~~~~~~~a~~~~e~Al~~~~~al----~~-~~a~~~lg~~~~~~g~~~eA~~~~~~al~~---~~~~ 781 (929)
|..+...+...+ .+++|.+.+++.. .| ...|+.+-..|...|+.++|.+.|+...+. -+..
T Consensus 108 yn~lI~~~~~~g-----------~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ 176 (501)
T 4g26_A 108 FTNGARLAVAKD-----------DPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEP 176 (501)
T ss_dssp HHHHHHHHHHHT-----------CHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHhcC-----------CHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHH
Confidence 888888888887 7777777776653 33 378889999999999999999999999887 3456
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 002379 782 AHQGLARVYYLKNELKAAYDEMTKLLEK 809 (929)
Q Consensus 782 a~~~la~~~~~~g~~~~A~~~~~~al~~ 809 (929)
++..+..++.+.|+.++|.+.+++..+.
T Consensus 177 ty~~Li~~~~~~g~~d~A~~ll~~Mr~~ 204 (501)
T 4g26_A 177 ELAALLKVSMDTKNADKVYKTLQRLRDL 204 (501)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCCHHHHHHHHHHHHHh
Confidence 8899999999999999999999998764
No 257
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.25 E-value=0.0023 Score=57.30 Aligned_cols=94 Identities=14% Similarity=0.031 Sum_probs=79.6
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHH---HHHHHHHHhccc-C--CHhHHHHHHHHHHHhccHHHHHHHHH
Q 002379 499 EKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRA---AISEIDRIIVFK-L--SVDCLELRAWLFIAADDYESALRDTL 572 (929)
Q Consensus 499 ~Ai~~~~kal~l~P~~~~a~~~~a~~~~~~g~~~~---A~~~~~~al~~~-~--~~~~~~~~a~~~~~~g~~~~A~~~~~ 572 (929)
.....|.+.+..++....+.+..|.++.+..+... ++..++..+... | .-++++.+|..++++|+|++|++.++
T Consensus 19 ~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~ 98 (126)
T 1nzn_A 19 KFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVR 98 (126)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 56677888888888999999999999999887766 999999998766 3 55679999999999999999999999
Q ss_pred HHHhhcCCchhhhccccHHHHHHHHH
Q 002379 573 ALLALESNYMMFHGRVSGDHLVKLLN 598 (929)
Q Consensus 573 ~al~~~p~~~~~~~~~~a~~ll~~~~ 598 (929)
.+|+..|++. .+..+...+.
T Consensus 99 ~lL~~eP~n~------QA~~Lk~~i~ 118 (126)
T 1nzn_A 99 GLLQTEPQNN------QAKELERLID 118 (126)
T ss_dssp HHHHHCTTCH------HHHHHHHHHH
T ss_pred HHHHhCCCCH------HHHHHHHHHH
Confidence 9999999999 5554444443
No 258
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=96.71 E-value=0.01 Score=55.58 Aligned_cols=132 Identities=11% Similarity=0.024 Sum_probs=90.2
Q ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCch---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch---
Q 002379 640 SFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE---------HERLVYEGWILYDTGHREEALSRAEKSISIERTF--- 707 (929)
Q Consensus 640 ~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~---------~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~--- 707 (929)
..+++.....++..|.|+.|+.....++....++ .+++..+|.+++..|+|..|...|+++++....-
T Consensus 20 ~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~ 99 (167)
T 3ffl_A 20 HMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKT 99 (167)
T ss_dssp -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcC
Confidence 4566777788889999999999998877654333 3478999999999999999999999999865322
Q ss_pred -HHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC-CCHHHHHH
Q 002379 708 -EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI-KHTRAHQG 785 (929)
Q Consensus 708 -~~~~~l~~~l~~~~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~-~~~~a~~~ 785 (929)
......+ ... ....... .....+..+.++.+|...|++++|+..++..-.. ..+.....
T Consensus 100 ~s~~~~~~----~~s-----------s~p~s~~----~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~Rt~kvnm~ 160 (167)
T 3ffl_A 100 SKVRPSTG----NSA-----------STPQSQC----LPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQRTPKINML 160 (167)
T ss_dssp --------------------------------C----CCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGCCHHHHHH
T ss_pred CCcccccc----ccC-----------CCccccc----ccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhcCHHHHHH
Confidence 0000000 000 0000000 0113467888999999999999999998776444 67778888
Q ss_pred HHHHH
Q 002379 786 LARVY 790 (929)
Q Consensus 786 la~~~ 790 (929)
||++|
T Consensus 161 LakLy 165 (167)
T 3ffl_A 161 LANLY 165 (167)
T ss_dssp HHHHC
T ss_pred HHHHh
Confidence 88775
No 259
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.57 E-value=0.026 Score=51.59 Aligned_cols=117 Identities=14% Similarity=0.009 Sum_probs=76.3
Q ss_pred CCCHHHHHHHHHHHHHhCCH------HHHHHHHHHHHHHccCCHHHHHHHhhhCCHHHHHHHHHHHHhcCCCCcHHHHHH
Q 002379 777 IKHTRAHQGLARVYYLKNEL------KAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYR 850 (929)
Q Consensus 777 ~~~~~a~~~la~~~~~~g~~------~~A~~~~~~al~~~p~~~~~~~~lg~~g~~~~A~~~~~~al~l~p~~~~~~~~l 850 (929)
-++++.|..........|+. ++-++.|++++..-|..... ........|...
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~----------------------~wrrYI~LWIrY 67 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYG----------------------QNESFARIQVRF 67 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGT----------------------TCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccc----------------------cHHHHHHHHHHH
Confidence 36677888777777777877 66677777777666543110 000123445555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCchHHH-HHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHH
Q 002379 851 AAVLMDDQKEVEAVEELSKAIAFKPDLQMLH-LRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDL 916 (929)
Q Consensus 851 a~~~~~~g~~~eA~~~l~kal~~~p~~~~~~-~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~ 916 (929)
|.. ...++.++|.+.|+.++.++....-.+ ..|.+..++|+..+|.+.+.+|+.+.|...+.++.
T Consensus 68 A~~-~ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~ 133 (161)
T 4h7y_A 68 AEL-KAIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEI 133 (161)
T ss_dssp HHH-HHHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHH
T ss_pred HHH-HHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHH
Confidence 533 455777888888888877755554444 34777777888888888888888888877665543
No 260
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.38 E-value=0.018 Score=52.59 Aligned_cols=82 Identities=13% Similarity=-0.031 Sum_probs=42.5
Q ss_pred CCCCcHHHHHHHHHHHhcCCH------HHHHHHHHHHHhcCCCch-----HH---HHHHHHHHHcCCHHHHHHHHHHHhc
Q 002379 840 DPLRTYPYRYRAAVLMDDQKE------VEAVEELSKAIAFKPDLQ-----ML---HLRAAFYESIGDLTSAIRDSQAALC 905 (929)
Q Consensus 840 ~p~~~~~~~~la~~~~~~g~~------~eA~~~l~kal~~~p~~~-----~~---~~la~~~~~~g~~~~A~~~~~~al~ 905 (929)
.|.+++.|......+.+.|+. ++-++.|++|+..-|... .+ +..-..+...+|.++|.+.|+.+++
T Consensus 9 ~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 9 MANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp -CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 455556666555555555655 555566666665544321 00 1111122344666666666666666
Q ss_pred cCCCCHHHHHHHHHHH
Q 002379 906 LDPNHMETLDLYNRAR 921 (929)
Q Consensus 906 l~P~~~~a~~~~~~l~ 921 (929)
+....+.+|..+++.+
T Consensus 89 ~hKkFAKiwi~~AqFE 104 (161)
T 4h7y_A 89 NCKKFAFVHISFAQFE 104 (161)
T ss_dssp HCTTBHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHH
Confidence 5555555555555544
No 261
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2
Probab=96.27 E-value=0.0044 Score=55.63 Aligned_cols=89 Identities=13% Similarity=0.143 Sum_probs=65.9
Q ss_pred EEEEEcCeEEEeehhHHhccCHHHHHHhcCC----CCcCCCCeeEecCCCCCHHHHHHHhhhHccCCCCCCChh-HHHHH
Q 002379 220 VTFCVRDKEISFVRNKIASLSSPFKAMLYGG----FVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFCPG-IVLEL 294 (929)
Q Consensus 220 v~~~v~~~~~~~hr~iLaa~S~~F~~mf~~~----~~e~~~~~i~~~~~~~~~~~~~~~l~~~Yt~~~~~~~~~-~~~~l 294 (929)
|++-|||..|...+..|.... .+||... +.....+.+-| |=+|..|+.||+|+.||++. ++.+ .+..+
T Consensus 15 V~LNVGG~~F~t~~~TL~~~p---~S~L~~~~~~~~~~~~~g~~Fi---DRdp~~F~~ILnflR~G~l~-~p~~~~~~~l 87 (124)
T 1s1g_A 15 IVLNVSGRRFQTWRTTLERYP---DTLLGSTEKEFFFNEDTKEYFF---DRDPEVFRCVLNFYRTGKLH-YPRYECISAY 87 (124)
T ss_dssp EEEEETTEEEEEEHHHHTTST---TSSTTSSGGGGTBCSSSCSEEE---CSCHHHHHHHHHHHHHSCBC-CCTTSCHHHH
T ss_pred EEEEeCCEEEEEeHHHHhcCC---CceecccCCcccccCCCCcEEE---cCChHHHHHHHHHHhcCCCC-CCCCcCHHHH
Confidence 999999999999999997542 2355331 11123456777 56999999999999999998 6554 47889
Q ss_pred HHHhchhChHhHH-HH-HHHHHH
Q 002379 295 LSFANRFCCEEMK-SA-CDAHLA 315 (929)
Q Consensus 295 l~~A~~~~~~~l~-~~-C~~~l~ 315 (929)
+.-|+.|+|+.+. .. |...+.
T Consensus 88 ~~Ea~fy~i~~l~l~~cC~~~~~ 110 (124)
T 1s1g_A 88 DDELAFYGILPEIIGDCCYEEYK 110 (124)
T ss_dssp HHHHHHTTCCGGGBCHHHHHHHH
T ss_pred HHHHHHcCCChHHHHHHHHHHHH
Confidence 9999999999873 44 444443
No 262
>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2
Probab=96.24 E-value=0.0018 Score=57.45 Aligned_cols=84 Identities=7% Similarity=0.035 Sum_probs=65.0
Q ss_pred EEEEEcCeEEEeehhHHhccC-HHHHHHhcCCC-CcCCCCeeEecCCCCCHHHHHHHhhhHccCCCCCCChh-HHHHHHH
Q 002379 220 VTFCVRDKEISFVRNKIASLS-SPFKAMLYGGF-VESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFCPG-IVLELLS 296 (929)
Q Consensus 220 v~~~v~~~~~~~hr~iLaa~S-~~F~~mf~~~~-~e~~~~~i~~~~~~~~~~~~~~~l~~~Yt~~~~~~~~~-~~~~ll~ 296 (929)
|++-|||..|...+..|..-. ..+..||.+.. .....+++-| |-+|..|+.||+|+.||++. ++.+ .+..++.
T Consensus 7 V~LNVGG~~f~T~~~TL~~~P~s~L~~l~~~~~~~~~~~g~~Fi---DRdp~~F~~ILnylR~G~l~-~p~~~~~~~~~~ 82 (115)
T 3kvt_A 7 VIINVGGIRHETYKATLKKIPATRLSRLTEGMLNYDPVLNEYFF---DRHPGVFAQIINYYRSGKLH-YPTDVCGPLFEE 82 (115)
T ss_dssp EEEEETTEEEEEEHHHHTTSCSSTTTTCCTTSTTEETTTTEEEE---CSCTTTHHHHHHHHHHSCBC-CCSSSCHHHHHH
T ss_pred EEEEECCEEEEecHHHHhcCCCccHHHHhcCCCCCCCCCCcEEE---ecChHHHHHHHHHhcCCCCC-CCCcccHHHHHH
Confidence 999999999999999997653 24556665432 1234567777 57899999999999999997 5543 4678999
Q ss_pred HhchhChHhHH
Q 002379 297 FANRFCCEEMK 307 (929)
Q Consensus 297 ~A~~~~~~~l~ 307 (929)
-|..|+|+...
T Consensus 83 Ea~fy~i~~~~ 93 (115)
T 3kvt_A 83 ELEFWGLDSNQ 93 (115)
T ss_dssp HHHHHTCCGGG
T ss_pred HHHHhCCChHH
Confidence 99999998754
No 263
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=96.00 E-value=0.035 Score=51.94 Aligned_cols=135 Identities=10% Similarity=-0.020 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHhcccC-CHh---------HHHHHHHHHHHhccHHHHHHHHHHHHhhcCCchhhh
Q 002379 516 FPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVD---------CLELRAWLFIAADDYESALRDTLALLALESNYMMFH 585 (929)
Q Consensus 516 ~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~---------~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 585 (929)
.+++.-...++..|.|+.|+...+.++.... +++ .+...|..++..++|..|...|+++++....-....
T Consensus 21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~ 100 (167)
T 3ffl_A 21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTS 100 (167)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCC
Confidence 4556666777888888888888887665443 232 467778999999999999999999887643222000
Q ss_pred ccccHHHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHH
Q 002379 586 GRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRL 665 (929)
Q Consensus 586 ~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~ 665 (929)
.....++. .. . ...... .+.+.++.+.++.+|..++++++|+..++.
T Consensus 101 ---s~~~~~~~-~s---s-------------------------~p~s~~-~~~e~Elkykia~C~~~l~~~~~Ai~~Le~ 147 (167)
T 3ffl_A 101 ---KVRPSTGN-SA---S-------------------------TPQSQC-LPSEIEVKYKLAECYTVLKQDKDAIAILDG 147 (167)
T ss_dssp ------------------------------------------------C-CCCHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred ---Cccccccc-cC---C-------------------------Cccccc-ccchHHHHHHHHHHHHHHCCHHHHHHHHhc
Confidence 00000000 00 0 000111 134567888899999999999999988776
Q ss_pred HHhcCCchHHHHHHHHHHH
Q 002379 666 ARNHSSSEHERLVYEGWIL 684 (929)
Q Consensus 666 al~~~p~~~~~~~~lg~~~ 684 (929)
.-... ..+.+...+|.+|
T Consensus 148 Ip~k~-Rt~kvnm~LakLy 165 (167)
T 3ffl_A 148 IPSRQ-RTPKINMLLANLY 165 (167)
T ss_dssp SCGGG-CCHHHHHHHHHHC
T ss_pred CCchh-cCHHHHHHHHHHh
Confidence 42222 2366666777665
No 264
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A
Probab=95.86 E-value=0.0066 Score=55.66 Aligned_cols=80 Identities=13% Similarity=0.086 Sum_probs=62.3
Q ss_pred EEEEEcCeEEEeehhHHhccCHHHHHHhcCCC----CcCCCCeeEecCCCCCHHHHHHHhhhHccCCCCCCChh-HHHHH
Q 002379 220 VTFCVRDKEISFVRNKIASLSSPFKAMLYGGF----VESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFCPG-IVLEL 294 (929)
Q Consensus 220 v~~~v~~~~~~~hr~iLaa~S~~F~~mf~~~~----~e~~~~~i~~~~~~~~~~~~~~~l~~~Yt~~~~~~~~~-~~~~l 294 (929)
|++-|||..|...+..|.... .+||...- .....+++-| |=+|..|+.||+|+.||++. ++.+ .+..+
T Consensus 37 V~LNVGG~~F~T~~~TL~~~P---~S~L~~~~~~~~~~~~~g~yFi---DRdp~~F~~ILnflR~G~l~-~p~~~~~~~l 109 (140)
T 2nz0_B 37 IVLNVSGRRFQTWRTTLERYP---DTLLGSTEKEFFFNEDTKEYFF---DRDPEVFRCVLNFYRTGKLH-YPRYECISAY 109 (140)
T ss_dssp EEEEETTEEEEEEHHHHHTCT---TSTTTSGGGGGSEETTTTEEEE---CSCHHHHHHHHHHHHHSSBC-CCTTSCHHHH
T ss_pred EEEEECCEEEEeeHHHHhcCC---CeeecccCCcccccCCCCeEEE---eCCcHHHHHHHHHHhcCCcC-CCCCcCHHHH
Confidence 999999999999999997542 34554311 1123457777 56999999999999999998 5544 47889
Q ss_pred HHHhchhChHhH
Q 002379 295 LSFANRFCCEEM 306 (929)
Q Consensus 295 l~~A~~~~~~~l 306 (929)
+.-|+.|+|+.+
T Consensus 110 ~eEa~fy~i~~l 121 (140)
T 2nz0_B 110 DDELAFYGILPE 121 (140)
T ss_dssp HHHHHHHTCCGG
T ss_pred HHHHHHcCCChH
Confidence 999999999887
No 265
>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2
Probab=95.75 E-value=0.0035 Score=54.59 Aligned_cols=85 Identities=9% Similarity=0.087 Sum_probs=63.2
Q ss_pred EEEEEcCeEEEeehhHHhccCHHHHHHhcCCC----CcCCCCeeEecCCCCCHHHHHHHhhhHccCCCCCCChh-HHHHH
Q 002379 220 VTFCVRDKEISFVRNKIASLSSPFKAMLYGGF----VESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFCPG-IVLEL 294 (929)
Q Consensus 220 v~~~v~~~~~~~hr~iLaa~S~~F~~mf~~~~----~e~~~~~i~~~~~~~~~~~~~~~l~~~Yt~~~~~~~~~-~~~~l 294 (929)
|++-|||..|...+..|..... +||...- .....+.+-| |=+|..|+.||+|+.||++. ++.+ .+..+
T Consensus 2 V~LNVGG~~f~t~~~TL~~~p~---s~L~~~~~~~~~~~~~~~~Fi---DRdp~~F~~ILnflR~g~l~-~p~~~~~~~l 74 (105)
T 1nn7_A 2 IVLNVSGTRFQTWQDTLERYPD---TLLGSSERDFFYHPETQQYFF---DRDPDIFRHILNFYRTGKLH-YPRHECISAY 74 (105)
T ss_dssp EEEEETTEEEEECHHHHHTSCS---SSTTSGGGGGGEEGGGTEEEE---CSCTTTHHHHHHHHHHSCBC-CCTTSCHHHH
T ss_pred EEEEECCEEEEEeHHHHhcCCC---ccccccCCcccccCCCCcEEE---eCCcHHHHHHHHHHhcCCCC-CCCCcCHHHH
Confidence 7899999999999999975432 3554311 1123457777 55999999999999999998 5544 37889
Q ss_pred HHHhchhChHhHH-HHHH
Q 002379 295 LSFANRFCCEEMK-SACD 311 (929)
Q Consensus 295 l~~A~~~~~~~l~-~~C~ 311 (929)
+.-|+.|+|+.+. ..|+
T Consensus 75 ~~Ea~fy~i~~l~~~~cc 92 (105)
T 1nn7_A 75 DEELAFFGLIPEIIGDCC 92 (105)
T ss_dssp HHHHHHHTCCSCCBCHHH
T ss_pred HHHHHHcCCCHHHHHHHH
Confidence 9999999998863 4444
No 266
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=95.73 E-value=0.12 Score=46.93 Aligned_cols=82 Identities=15% Similarity=0.068 Sum_probs=68.2
Q ss_pred CCCChHHHHHHHHHHHHhCCH---HHHHHHHHHHhcccC--CHhHHHHHHHHHHHhccHHHHHHHHHHHHhhcCCchhhh
Q 002379 511 DPTLSFPYKYRAVAKMEEGQI---RAAISEIDRIIVFKL--SVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFH 585 (929)
Q Consensus 511 ~P~~~~a~~~~a~~~~~~g~~---~~A~~~~~~al~~~~--~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 585 (929)
+...+.+.++.|.++.+..+. .+++..++..+...| .-++++.+|..++++|+|++|.++.+.+|+..|+|.
T Consensus 35 ~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~--- 111 (144)
T 1y8m_A 35 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK--- 111 (144)
T ss_dssp TTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCH---
T ss_pred CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcH---
Confidence 356788999999999988764 578999999987666 567899999999999999999999999999999999
Q ss_pred ccccHHHHHHHHH
Q 002379 586 GRVSGDHLVKLLN 598 (929)
Q Consensus 586 ~~~~a~~ll~~~~ 598 (929)
.+..+...+.
T Consensus 112 ---QA~~Lk~~Ie 121 (144)
T 1y8m_A 112 ---QVGALKSMVE 121 (144)
T ss_dssp ---HHHHHHHHHH
T ss_pred ---HHHHHHHHHH
Confidence 4554444444
No 267
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=95.42 E-value=0.096 Score=46.93 Aligned_cols=81 Identities=15% Similarity=0.073 Sum_probs=65.9
Q ss_pred CChHHHHHHHHHHHHhCCH---HHHHHHHHHHhcccC--CHhHHHHHHHHHHHhccHHHHHHHHHHHHhhcCCchhhhcc
Q 002379 513 TLSFPYKYRAVAKMEEGQI---RAAISEIDRIIVFKL--SVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGR 587 (929)
Q Consensus 513 ~~~~a~~~~a~~~~~~g~~---~~A~~~~~~al~~~~--~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 587 (929)
-.+.+-++.|.++.+..+. .+++..++..+...+ .-++++.+|..++++|+|++|.+..+.+++..|++.
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~----- 112 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK----- 112 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCH-----
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCH-----
Confidence 3567888899999887754 578899998887666 467899999999999999999999999999999999
Q ss_pred ccHHHHHHHHHH
Q 002379 588 VSGDHLVKLLNH 599 (929)
Q Consensus 588 ~~a~~ll~~~~~ 599 (929)
.+..+...+..
T Consensus 113 -QA~~Lk~~Ie~ 123 (134)
T 3o48_A 113 -QVGALKSMVED 123 (134)
T ss_dssp -HHHHHHHHHHH
T ss_pred -HHHHHHHHHHH
Confidence 55555554443
No 268
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=95.29 E-value=1.7 Score=47.25 Aligned_cols=185 Identities=11% Similarity=0.019 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhccch-HHHHHH--HHHHHhcCCCCCChHHHHHHHHHHhhchhccCc---hhH
Q 002379 676 RLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLK--AYILADTNLDPESSTYVIQLLEEALRCPSDGLR---KGQ 749 (929)
Q Consensus 676 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~~~~~l--~~~l~~~~~~~~~~~~a~~~~e~Al~~~~~al~---~~~ 749 (929)
+...+|.+|...|++++-.+.+......-+.. .+.... -..+......++.....+....++++....--+ +..
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~ 100 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQS 100 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666555555544333222 111111 111111122233444434444444443322111 123
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHcC----CCH----HHHHHHHHHHHHhCCHHHHHHHHHHHHHHcc---CCHHH--
Q 002379 750 ALNNLGSIYVECGKLDQAENCYINALDI----KHT----RAHQGLARVYYLKNELKAAYDEMTKLLEKAQ---YSASA-- 816 (929)
Q Consensus 750 a~~~lg~~~~~~g~~~eA~~~~~~al~~----~~~----~a~~~la~~~~~~g~~~~A~~~~~~al~~~p---~~~~~-- 816 (929)
.-..+|..|...|+|.+|...+.+..+. ++. +.+.....+|...+++.++...+.++..... .++..
T Consensus 101 l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a 180 (394)
T 3txn_A 101 LEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQG 180 (394)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHH
Confidence 3458999999999999999999888765 222 4677788899999999999999998876542 22222
Q ss_pred --HHHHh-----hhCCHHHHHHHHHHHHhcCCCC-----cHHHHHHHHHHHhcCCH
Q 002379 817 --FEKRS-----EYSDREMAKNDLNMATQLDPLR-----TYPYRYRAAVLMDDQKE 860 (929)
Q Consensus 817 --~~~lg-----~~g~~~~A~~~~~~al~l~p~~-----~~~~~~la~~~~~~g~~ 860 (929)
...-| ..++|..|...|-++++-.... .....+++.+-+-.++.
T Consensus 181 ~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~~~r 236 (394)
T 3txn_A 181 ALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIMLGQS 236 (394)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCG
T ss_pred HHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHcCCH
Confidence 11111 3577888888887776432221 22444555555555553
No 269
>1t1d_A Protein (potassium channel KV1.1); potassium channels, tetramerization domain, aplysia KV1.1, proton transport, membrane protein; 1.51A {Aplysia californica} SCOP: d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E* 1qdw_A 1dsx_A
Probab=95.23 E-value=0.011 Score=50.75 Aligned_cols=84 Identities=8% Similarity=0.010 Sum_probs=60.7
Q ss_pred EEEEEcCeEEEeehhHHhccC-HHHHHHhcC-CCCcCCCCeeEecCCCCCHHHHHHHhhhHcc-CCCCCCChh-HHHHHH
Q 002379 220 VTFCVRDKEISFVRNKIASLS-SPFKAMLYG-GFVESKRKTIDFSHDGVSVEGLRAVEVYTRT-SRVDLFCPG-IVLELL 295 (929)
Q Consensus 220 v~~~v~~~~~~~hr~iLaa~S-~~F~~mf~~-~~~e~~~~~i~~~~~~~~~~~~~~~l~~~Yt-~~~~~~~~~-~~~~ll 295 (929)
|++-|||..|...+..|..-- ..+..|+.. .......+++-| |-+|..|+.+|+|+.| |++. ++.+ .+..++
T Consensus 3 v~LNVGG~~f~t~~~TL~~~p~s~L~~~~~~~~~~~~~~~eyFi---DRdp~~F~~ILnflR~~G~l~-~p~~~~~~~~~ 78 (100)
T 1t1d_A 3 VVINVSGLRFETQLKTLNQFPDTLLGNPQKRNRYYDPLRNEYFF---DRNRPSFDAILYFYQSGGRLR-RPVNVPLDVFS 78 (100)
T ss_dssp EEEEETTEEEEEEHHHHHTSTTSTTTCHHHHGGGEETTTTEEEE---CSCSTTHHHHHHHHHTTSCCC-CCTTSCHHHHH
T ss_pred EEEEECCEEEEeeHHHHhcCCCccccchhccccccCCCceeEEE---cCChHHHHHHHHHHhcCCccc-CCCCCCHHHHH
Confidence 889999999999999996431 122233321 111224567777 5689999999999999 8987 4443 467899
Q ss_pred HHhchhChHhHH
Q 002379 296 SFANRFCCEEMK 307 (929)
Q Consensus 296 ~~A~~~~~~~l~ 307 (929)
.-|+.|+|+.+.
T Consensus 79 ~Ea~fy~i~~~~ 90 (100)
T 1t1d_A 79 EEIKFYELGENA 90 (100)
T ss_dssp HHHHHTTCCHHH
T ss_pred HHHHHcCCCHHH
Confidence 999999997654
No 270
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=94.84 E-value=1.1 Score=54.20 Aligned_cols=100 Identities=19% Similarity=0.097 Sum_probs=57.2
Q ss_pred HHHHhcCHHHHHH-HHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHHHHHhcCCCCCCh
Q 002379 649 LLLRLNCQKAAMR-CLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESS 727 (929)
Q Consensus 649 ~~~~~g~~~~A~~-~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~l~~~l~~~~~~~~~~ 727 (929)
.....+++++|.+ .+ ..-|+ ......+...+...|.+++|++..+ +|.. .+.++ ...+
T Consensus 608 ~~~~~~~~~~a~~~~l----~~i~~-~~~~~~~~~~l~~~~~~~~a~~~~~-----~~~~--~f~~~---l~~~------ 666 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVL----PNVEG-KDSLTKIARFLEGQEYYEEALNISP-----DQDQ--KFELA---LKVG------ 666 (814)
T ss_dssp HHHHTTCHHHHHHHTG----GGCCC-HHHHHHHHHHHHHTTCHHHHHHHCC-----CHHH--HHHHH---HHHT------
T ss_pred HHHHhCCHHHHHHHHH----hcCCc-hHHHHHHHHHHHhCCChHHheecCC-----Ccch--heehh---hhcC------
Confidence 3345788888866 33 11120 1122556677788888888876553 1211 11111 1122
Q ss_pred HHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002379 728 TYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINAL 775 (929)
Q Consensus 728 ~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al 775 (929)
++++|.+..+. +.....|..+|..+...++++.|+.+|.++-
T Consensus 667 -----~~~~A~~~~~~-~~~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 667 -----QLTLARDLLTD-ESAEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp -----CHHHHHHHHTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred -----CHHHHHHHHHh-hCcHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 55666554433 2345677888888888888888888887653
No 271
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=94.27 E-value=4.1 Score=49.06 Aligned_cols=48 Identities=17% Similarity=0.212 Sum_probs=41.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 002379 756 SIYVECGKLDQAENCYINALDIKHTRAHQGLARVYYLKNELKAAYDEMTKL 806 (929)
Q Consensus 756 ~~~~~~g~~~eA~~~~~~al~~~~~~a~~~la~~~~~~g~~~~A~~~~~~a 806 (929)
......|++++|.+.. ..++++..|..+|..+.+.++++.|...|.++
T Consensus 660 ~~~l~~~~~~~A~~~~---~~~~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 660 ELALKVGQLTLARDLL---TDESAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHHTCHHHHHHHH---TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ehhhhcCCHHHHHHHH---HhhCcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 3457789999998874 44578899999999999999999999999876
No 272
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=93.99 E-value=0.18 Score=59.73 Aligned_cols=61 Identities=16% Similarity=-0.014 Sum_probs=56.0
Q ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002379 640 SFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKS 700 (929)
Q Consensus 640 ~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~a 700 (929)
..++...+..+...|+++-|+...++|+...|.+...|..|+.+|..+|+|+.|+-.+..+
T Consensus 337 ~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 337 SDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred hHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 4467778888999999999999999999999999999999999999999999999887665
No 273
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=93.68 E-value=2.2 Score=46.33 Aligned_cols=100 Identities=10% Similarity=-0.039 Sum_probs=72.1
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcC----C--chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch-HHHHHHHHH
Q 002379 644 FRQSLLLLRLNCQKAAMRCLRLARNHS----S--SEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYI 716 (929)
Q Consensus 644 ~~lg~~~~~~g~~~~A~~~l~~al~~~----p--~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~~~~~l~~~ 716 (929)
..+|..|+..|+|.+|...+.+.++.- . .-.+++.....+|...+++.++...+.++......- .....
T Consensus 103 ~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i---- 178 (394)
T 3txn_A 103 ARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV---- 178 (394)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH----
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH----
Confidence 378999999999999999998887631 1 125667777889999999999999999887643110 00000
Q ss_pred HHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHH-HcCCHHHHHHHHHHHHcC
Q 002379 717 LADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYV-ECGKLDQAENCYINALDI 777 (929)
Q Consensus 717 l~~~~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~-~~g~~~eA~~~~~~al~~ 777 (929)
.+.....-|.++. ..++|.+|..+|-.+.+.
T Consensus 179 ------------------------------~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~ 210 (394)
T 3txn_A 179 ------------------------------QGALDLQSGILHAADERDFKTAFSYFYEAFEG 210 (394)
T ss_dssp ------------------------------HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred ------------------------------HHHHHHHhhHHHHHhccCHHHHHHHHHHHHhc
Confidence 0233455677888 799999999998888643
No 274
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=93.35 E-value=15 Score=42.59 Aligned_cols=53 Identities=9% Similarity=-0.056 Sum_probs=34.2
Q ss_pred CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcC
Q 002379 636 DPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTG 688 (929)
Q Consensus 636 ~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g 688 (929)
.|.+....+.........|+..+|....+++.......+.....+-..+...|
T Consensus 98 ~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~g 150 (618)
T 1qsa_A 98 KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASG 150 (618)
T ss_dssp CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHCC
Confidence 46777777788888888888888888777776655444444433433344333
No 275
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=92.33 E-value=7 Score=36.26 Aligned_cols=94 Identities=16% Similarity=0.125 Sum_probs=71.8
Q ss_pred HHHHHHHHHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-
Q 002379 591 DHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNH- 669 (929)
Q Consensus 591 ~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~- 669 (929)
..+++....-.|.|.++.-.+ ..-+.....+..+.+|....+|..|+..++..++-
T Consensus 36 ~lL~~I~LyyngEY~R~Lf~L-----------------------~~lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~k 92 (242)
T 3kae_A 36 RMLMSIVLYLNGEYTRALFHL-----------------------HKLNTCTSKYYESLCYKKKKDYKKAIKSLESILEGK 92 (242)
T ss_dssp HHHHHHHHHHTTCHHHHHHHH-----------------------HTCCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HhhhhhhhhhcchHhHHHHHH-----------------------HhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 345667777777877774433 12345677788899999999999999999999832
Q ss_pred ----------------CCchHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhccch
Q 002379 670 ----------------SSSEHE-RLVYEGWILYDTGHREEALSRAEKSISIERTF 707 (929)
Q Consensus 670 ----------------~p~~~~-~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~ 707 (929)
+|.+.+ .+..+|.++.+.|+.+||+.++.......|-+
T Consensus 93 vd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf 147 (242)
T 3kae_A 93 VERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLF 147 (242)
T ss_dssp SBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred cccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCcccc
Confidence 233333 45677999999999999999999999988866
No 276
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=92.24 E-value=0.7 Score=54.69 Aligned_cols=58 Identities=9% Similarity=-0.043 Sum_probs=43.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-hHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002379 846 PYRYRAAVLMDDQKEVEAVEELSKAIAFKPDL-QMLHLRAAFYESIGDLTSAIRDSQAA 903 (929)
Q Consensus 846 ~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~-~~~~~la~~~~~~g~~~~A~~~~~~a 903 (929)
.+...+..+...|+++-|++..++|+...|+. ..|+.++.+|..+||++.|+-.+...
T Consensus 339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 339 LLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 44455667777788888888888888888876 46667788888888888888766655
No 277
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=91.66 E-value=9.1 Score=36.22 Aligned_cols=48 Identities=13% Similarity=-0.099 Sum_probs=38.8
Q ss_pred HHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002379 650 LLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSIS 702 (929)
Q Consensus 650 ~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~ 702 (929)
....|+++.|.+..+.. ++...|..+|......|+++-|..+|+++-.
T Consensus 15 AL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D 62 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHS 62 (177)
T ss_dssp HHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC
T ss_pred HHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC
Confidence 35678999998887654 4577899999999999999999999887643
No 278
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=91.53 E-value=24 Score=40.78 Aligned_cols=136 Identities=10% Similarity=-0.032 Sum_probs=90.0
Q ss_pred HHHcCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHh--hhCCHHHHHHHH
Q 002379 758 YVECGKLDQAENCYINALDI--KHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS--EYSDREMAKNDL 833 (929)
Q Consensus 758 ~~~~g~~~eA~~~~~~al~~--~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg--~~g~~~~A~~~~ 833 (929)
.+..|+++.|...|.+.-.. ..+...+.+|+++...|+.++|...|.++.. +.+ .|-.++ .+|.... +
T Consensus 295 Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~--~~~--fYg~lAa~~Lg~~~~----~ 366 (618)
T 1qsa_A 295 ALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ--QRG--FYPMVAAQRIGEEYE----L 366 (618)
T ss_dssp HHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--SCS--HHHHHHHHHTTCCCC----C
T ss_pred HHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc--CCC--hHHHHHHHHcCCCCC----C
Confidence 34569999999999876554 4567889999999999999999999999875 333 333333 2332100 0
Q ss_pred HHHHhcCCCC-----cHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002379 834 NMATQLDPLR-----TYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLHLRAAFYESIGDLTSAIRDSQAA 903 (929)
Q Consensus 834 ~~al~l~p~~-----~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~a 903 (929)
. .....+.. ...-...+..+...|....|...+...... .+......++.+....|.++.++....+.
T Consensus 367 ~-~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~-~~~~~~~~la~~a~~~~~~~~~v~~~~~~ 439 (618)
T 1qsa_A 367 K-IDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS-KSKTEQAQLARYAFNNQWWDLSVQATIAG 439 (618)
T ss_dssp C-CCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred C-CCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhc-CCHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 0 00011111 113356677889999999999999888764 33444556677778888888887666543
No 279
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=90.08 E-value=12 Score=34.76 Aligned_cols=94 Identities=13% Similarity=0.099 Sum_probs=68.4
Q ss_pred chhhhHHHHHHhhhh--HHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhc--ccCCH-----------
Q 002379 484 TGWMYQERSLYNLGR--EKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIV--FKLSV----------- 548 (929)
Q Consensus 484 ~~~~~~~~~l~~~~~--~Ai~~~~kal~l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~--~~~~~----------- 548 (929)
+-.+..+..++..|+ .++-.+ .+-+...+.++.+.||.+.++|..|+..+++++. .+.+|
T Consensus 34 eY~lL~~I~LyyngEY~R~Lf~L-----~~lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffv 108 (242)
T 3kae_A 34 EYRMLMSIVLYLNGEYTRALFHL-----HKLNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFV 108 (242)
T ss_dssp CTHHHHHHHHHHTTCHHHHHHHH-----HTCCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSC
T ss_pred HHHhhhhhhhhhcchHhHHHHHH-----HhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeee
Confidence 444555555665655 333222 2345567888899999999999999999999993 22121
Q ss_pred -----h-HHHHHHHHHHHhccHHHHHHHHHHHHhhcCCch
Q 002379 549 -----D-CLELRAWLFIAADDYESALRDTLALLALESNYM 582 (929)
Q Consensus 549 -----~-~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~ 582 (929)
+ .+..+|.++.+.|+.++|+..|.......|-.+
T Consensus 109 d~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~ 148 (242)
T 3kae_A 109 DPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFS 148 (242)
T ss_dssp CTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred ccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccc
Confidence 1 166789999999999999999999988877655
No 280
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=89.13 E-value=3 Score=45.57 Aligned_cols=126 Identities=12% Similarity=0.009 Sum_probs=81.9
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHhhhCCH-HHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHH
Q 002379 787 ARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDR-EMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVE 865 (929)
Q Consensus 787 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~g~~-~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~ 865 (929)
|......|+.+.|...+.+++.......-. .. ....+ ......++.. ...+...++..+...|++.+|+.
T Consensus 122 ~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~--~~-~~~~w~~~~r~~l~~~------~~~a~~~~~~~~l~~g~~~~a~~ 192 (388)
T 2ff4_A 122 GVHAAAAGRFEQASRHLSAALREWRGPVLD--DL-RDFQFVEPFATALVED------KVLAHTAKAEAEIACGRASAVIA 192 (388)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCSSTTG--GG-TTSTTHHHHHHHHHHH------HHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhcCCCCCC--CC-CchhHHHHHHHHHHHH------HHHHHHHHHHHHHHCCCHHHHHH
Confidence 334445789999999999999875332110 00 00001 1111111111 12345567778889999999999
Q ss_pred HHHHHHhcCCCchHHH-HHHHHHHHcCCHHHHHHHHHHHhc-------cCCCCHHHHHHHHHHHh
Q 002379 866 ELSKAIAFKPDLQMLH-LRAAFYESIGDLTSAIRDSQAALC-------LDPNHMETLDLYNRARD 922 (929)
Q Consensus 866 ~l~kal~~~p~~~~~~-~la~~~~~~g~~~~A~~~~~~al~-------l~P~~~~a~~~~~~l~~ 922 (929)
.+.+++..+|-++.++ .+-.++...|+..+|++.|+++-+ ++|. ++...++.+|..
T Consensus 193 ~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~-~~l~~l~~~il~ 256 (388)
T 2ff4_A 193 ELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPG-PTLRALNERILR 256 (388)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCC-HHHHHHHHHHHT
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHc
Confidence 9999999999887666 668888889999999999887644 4674 566666666543
No 281
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.77 E-value=25 Score=38.95 Aligned_cols=180 Identities=13% Similarity=0.005 Sum_probs=100.8
Q ss_pred cCHHHHHHHHHHHHhc------CCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch-HHHHHHHH---HHHhcCCC
Q 002379 654 NCQKAAMRCLRLARNH------SSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAY---ILADTNLD 723 (929)
Q Consensus 654 g~~~~A~~~l~~al~~------~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~~~~~l~~---~l~~~~~~ 723 (929)
|++++|++.+...-+. .+....+...+..++...|+++...+.+.-........ .+...+.. .+... .
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~--~ 107 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKS--S 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHH--H
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhc--C
Confidence 5566776655333221 12335667777778888888877766654433322211 11111111 11110 0
Q ss_pred CCChHHHHHHHHHHhhchhccC------c--hhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC----CC----HHHHHHHH
Q 002379 724 PESSTYVIQLLEEALRCPSDGL------R--KGQALNNLGSIYVECGKLDQAENCYINALDI----KH----TRAHQGLA 787 (929)
Q Consensus 724 ~~~~~~a~~~~e~Al~~~~~al------~--~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~----~~----~~a~~~la 787 (929)
+... .......+....... + .......|+.++...|++.+|...+.....- .+ .+.+....
T Consensus 108 ~~~d---~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~ 184 (445)
T 4b4t_P 108 KSLD---LNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQM 184 (445)
T ss_dssp CTTH---HHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHH
T ss_pred Cchh---HHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 0000 001112222222111 1 2456678999999999999999999887543 11 25778888
Q ss_pred HHHHHhCCHHHHHHHHHHHHH---HccCCHH----HHHHHh----hhCCHHHHHHHHHHHHh
Q 002379 788 RVYYLKNELKAAYDEMTKLLE---KAQYSAS----AFEKRS----EYSDREMAKNDLNMATQ 838 (929)
Q Consensus 788 ~~~~~~g~~~~A~~~~~~al~---~~p~~~~----~~~~lg----~~g~~~~A~~~~~~al~ 838 (929)
+++...+++..|...++++.. ..+..+. .+...| ..++|.+|-.+|..+..
T Consensus 185 rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 185 ELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 999999999999999988743 2233332 222223 44777777777777654
No 282
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=87.19 E-value=3.8 Score=44.72 Aligned_cols=61 Identities=8% Similarity=-0.052 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002379 642 LRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSIS 702 (929)
Q Consensus 642 ~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~ 702 (929)
+...++..+...|++.+|+..+++++..+|-+...+..+-.++...|+..+|+..|++.-+
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4456778889999999999999999999999999999999999999999999999988754
No 283
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=86.84 E-value=2.7 Score=47.27 Aligned_cols=78 Identities=14% Similarity=-0.010 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch-HHHHHHHHHHHh
Q 002379 642 LRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILAD 719 (929)
Q Consensus 642 ~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~~~~~l~~~l~~ 719 (929)
.+..+|.+......+..|..+|.+|..+.|++...++.+|.+....|+.-+|+-+|-+++.....+ .+..++...+..
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence 456789998888999999999999999999999999999999999999999999999999876666 777777776654
No 284
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=86.55 E-value=9.4 Score=38.67 Aligned_cols=59 Identities=19% Similarity=0.004 Sum_probs=55.5
Q ss_pred HHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch
Q 002379 649 LLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF 707 (929)
Q Consensus 649 ~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~ 707 (929)
.+++.|+.++|+......++.+|.+......+..++.-.|+++.|.+.++.+.+++|+.
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~ 64 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY 64 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh
Confidence 35567999999999999999999999999999999999999999999999999999988
No 285
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=86.37 E-value=2.2 Score=43.32 Aligned_cols=60 Identities=20% Similarity=0.152 Sum_probs=28.9
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCchHHH-HHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHH
Q 002379 855 MDDQKEVEAVEELSKAIAFKPDLQMLH-LRAAFYESIGDLTSAIRDSQAALCLDPNHMETL 914 (929)
Q Consensus 855 ~~~g~~~eA~~~l~kal~~~p~~~~~~-~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~ 914 (929)
++.|+.++|++.....++.+|.+.... .+...+.-.|+++.|.+.++.+.+++|+.....
T Consensus 8 l~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a 68 (273)
T 1zbp_A 8 LSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGA 68 (273)
T ss_dssp TTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHH
T ss_pred HhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHH
Confidence 344455555555555555555444433 334444444555555555555555555444443
No 286
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=85.98 E-value=3.8 Score=46.12 Aligned_cols=49 Identities=20% Similarity=0.227 Sum_probs=24.6
Q ss_pred CHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 002379 825 DREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAF 873 (929)
Q Consensus 825 ~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~ 873 (929)
....|..+|.+|..+.|.+..+++.+|.+....|+.-+|+-+|.+++..
T Consensus 167 ~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~ 215 (497)
T 1ya0_A 167 QTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAV 215 (497)
T ss_dssp CHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhc
Confidence 3345555555555555555555555555555555555555555554443
No 287
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=84.19 E-value=15 Score=44.61 Aligned_cols=97 Identities=9% Similarity=-0.014 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHcC------CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHhh
Q 002379 749 QALNNLGSIYVECGKLDQAENCYINALDI------KHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSE 822 (929)
Q Consensus 749 ~a~~~lg~~~~~~g~~~eA~~~~~~al~~------~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 822 (929)
..|+.+-..|.+.|+.++|...|....+. -+..+|..+-..|.+.|+.++|.+.|++..+..
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G------------ 195 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAG------------ 195 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT------------
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcC------------
Confidence 56888999999999999999999776543 355788899999999999999999998886542
Q ss_pred hCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCC-HHHHHHHHHHHHhcC
Q 002379 823 YSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQK-EVEAVEELSKAIAFK 874 (929)
Q Consensus 823 ~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~-~~eA~~~l~kal~~~ 874 (929)
..| +...|..+-..+.+.|+ .++|.+.|++..+..
T Consensus 196 ----------------~~P-DvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG 231 (1134)
T 3spa_A 196 ----------------LTP-DLLSYAAALQCMGRQDQDAGTIERCLEQMSQEG 231 (1134)
T ss_dssp ----------------CCC-CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred ----------------CCC-cHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Confidence 123 44556666667777776 467888888877653
No 288
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=83.63 E-value=30 Score=32.65 Aligned_cols=126 Identities=13% Similarity=-0.015 Sum_probs=68.9
Q ss_pred HHcCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHhhhCCHHHHHHHHHHHHh
Q 002379 759 VECGKLDQAENCYINALDIKHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQ 838 (929)
Q Consensus 759 ~~~g~~~eA~~~~~~al~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~g~~~~A~~~~~~al~ 838 (929)
+..|+++.|.+..+.. +....|..+|......|+++-|...|.++-.. ....+.....|+.++-...-+.+..
T Consensus 16 L~lg~l~~A~e~a~~l---~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~----~~L~~Ly~~tg~~e~L~kla~iA~~ 88 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL---NDSITWERLIQEALAQGNASLAEMIYQTQHSF----DKLSFLYLVTGDVNKLSKMQNIAQT 88 (177)
T ss_dssp HHTTCHHHHHHHHHHH---CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCH----HHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHh---CCHHHHHHHHHHHHHcCChHHHHHHHHHhCCH----HHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4578888887765433 66778888888888888888888877765221 1111111133444443333333333
Q ss_pred cCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002379 839 LDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLHLRAAFYESIGDLTSAIRDSQAA 903 (929)
Q Consensus 839 l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~a 903 (929)
... +.....+++..|+++++++.|.+. ...+.++..|.. .|-.+.|.+..+.+
T Consensus 89 ~g~-----~n~af~~~l~lGdv~~~i~lL~~~----~r~~eA~~~A~t---~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 89 RED-----FGSMLLNTFYNNSTKERSSIFAEG----GSLPLAYAVAKA---NGDEAAASAFLEQA 141 (177)
T ss_dssp TTC-----HHHHHHHHHHHTCHHHHHHHHHHT----TCHHHHHHHHHH---TTCHHHHHHHHHHT
T ss_pred Ccc-----HHHHHHHHHHcCCHHHHHHHHHHC----CChHHHHHHHHH---cCcHHHHHHHHHHh
Confidence 222 222233566678888888877553 223333333333 35555565555443
No 289
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.54 E-value=10 Score=41.96 Aligned_cols=91 Identities=18% Similarity=0.118 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHcC----C-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCC--HHHH----
Q 002379 749 QALNNLGSIYVECGKLDQAENCYINALDI----K-HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYS--ASAF---- 817 (929)
Q Consensus 749 ~a~~~lg~~~~~~g~~~eA~~~~~~al~~----~-~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~---- 817 (929)
.++..+|..|...|++++|.+.|.++... + -.+.+....+++...+++..+...+.++....... +...
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 57889999999999999999999998876 2 23688889999999999999999999987654322 1111
Q ss_pred HHHh----hhCCHHHHHHHHHHHHhc
Q 002379 818 EKRS----EYSDREMAKNDLNMATQL 839 (929)
Q Consensus 818 ~~lg----~~g~~~~A~~~~~~al~l 839 (929)
...| ..++|..|-..|-.++.-
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 1111 346677776666665543
No 290
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=80.48 E-value=38 Score=42.61 Aligned_cols=139 Identities=11% Similarity=-0.058 Sum_probs=87.7
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHhcccCCHhHHHHHHHHHHHhccHHHHHHHHHHHHhhcCCchhhhccccHHHHHHHHHH
Q 002379 520 YRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNH 599 (929)
Q Consensus 520 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~ll~~~~~ 599 (929)
.+...+...+.++-|... ...+ ..++...+.+|.+++..|++++|...|+++-.--........ .
T Consensus 817 ~l~~~l~~~~~~~~~~~l-~~~~--~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~---~--------- 881 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQL-IGWL--NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFA---V--------- 881 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHH-HHHS--CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCS---S---------
T ss_pred HHHHHHHHhhhHHHHHHH-hhhc--cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhh---h---------
Confidence 444556677777666543 3332 235666788899999999999999999876432111110000 0
Q ss_pred hhcccchHHHHHHhhhccccccccccHHHHHHHHh---cCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCch-H-
Q 002379 600 HVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLI---NDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE-H- 674 (929)
Q Consensus 600 ~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~-~- 674 (929)
+........ .....+..|.....++...|.++.+++..+.|++..+.+ .
T Consensus 882 --------------------------~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~ 935 (1139)
T 4fhn_B 882 --------------------------LREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDED 935 (1139)
T ss_dssp --------------------------HHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHH
T ss_pred --------------------------hcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChh
Confidence 000011111 122234566777788888999999999999999865432 2
Q ss_pred ---HHHHHHHHHHHHcCCHHHHHHHHHH
Q 002379 675 ---ERLVYEGWILYDTGHREEALSRAEK 699 (929)
Q Consensus 675 ---~~~~~lg~~~~~~g~~~eA~~~~~~ 699 (929)
..|..+=..+...|+|++|...+..
T Consensus 936 ~~~~l~~~iFk~~L~l~~ye~Ay~aL~~ 963 (1139)
T 4fhn_B 936 LSIAITHETLKTACAAGKFDAAHVALMV 963 (1139)
T ss_dssp HHHHHHHHHHHHHHHHCCSGGGGHHHHH
T ss_pred hHHHHHHHHHHHHHhhCCHHHHHHHHHh
Confidence 2567777888999999999877744
No 291
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=80.35 E-value=18 Score=43.92 Aligned_cols=95 Identities=8% Similarity=-0.080 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----ccchHHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCchh
Q 002379 674 HERLVYEGWILYDTGHREEALSRAEKSISI-----ERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG 748 (929)
Q Consensus 674 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~-----~p~~~~~~~l~~~l~~~~~~~~~~~~a~~~~e~Al~~~~~al~~~ 748 (929)
...+..+-..|.+.|+.++|...|+..-+. .|+.
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~Pdv----------------------------------------- 165 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTL----------------------------------------- 165 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCH-----------------------------------------
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCH-----------------------------------------
Confidence 445677777788888888888887654322 2332
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHcC---CCHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHH
Q 002379 749 QALNNLGSIYVECGKLDQAENCYINALDI---KHTRAHQGLARVYYLKNE-LKAAYDEMTKLLEK 809 (929)
Q Consensus 749 ~a~~~lg~~~~~~g~~~eA~~~~~~al~~---~~~~a~~~la~~~~~~g~-~~~A~~~~~~al~~ 809 (929)
..|+.+-..|.+.|+.++|.+.|+++.+. -+..+|..+-..+.+.|+ .++|.+.+++..+.
T Consensus 166 vTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~~k 230 (1134)
T 3spa_A 166 DMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQE 230 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Confidence 23555555556666666666666666554 123455555555555555 34555666555544
No 292
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}
Probab=79.45 E-value=1.4 Score=38.03 Aligned_cols=33 Identities=15% Similarity=0.207 Sum_probs=30.4
Q ss_pred cCChhhHHHHHHHHHHhChHHHHHHHHHHHHhch
Q 002379 318 VGDIEDALILIDYGLEERATLLVASCLQVLLREL 351 (929)
Q Consensus 318 ~~~~~n~~~~~~~a~~~~~~~L~~~c~~~i~~~~ 351 (929)
++ .+|+..++..|+.++++.|++.|.+|+.+++
T Consensus 77 ~~-~~~~~~ll~~A~~~~~~~L~~~c~~~l~~~l 109 (109)
T 2vkp_A 77 LE-ADTVLATLYAAKKYIVPALAKACVNFLETSL 109 (109)
T ss_dssp CC-TTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CC-HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC
Confidence 55 8999999999999999999999999998764
No 293
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=78.57 E-value=28 Score=43.81 Aligned_cols=130 Identities=12% Similarity=0.050 Sum_probs=75.8
Q ss_pred HHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---C--------------------CchHHHHHHHHHHHHHc
Q 002379 631 QMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNH---S--------------------SSEHERLVYEGWILYDT 687 (929)
Q Consensus 631 ~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~---~--------------------p~~~~~~~~lg~~~~~~ 687 (929)
..+...|.++...+.+|.++...|++++|..+|+++-.- . ...+..|..+..++.+.
T Consensus 833 ~l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~ 912 (1139)
T 4fhn_B 833 QLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEE 912 (1139)
T ss_dssp HHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHT
T ss_pred HHhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHc
Confidence 334445667777788888888888888888888776311 0 00123344555666666
Q ss_pred CCHHHHHHHHHHHHhhccch-HHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHH
Q 002379 688 GHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQ 766 (929)
Q Consensus 688 g~~~eA~~~~~~al~~~p~~-~~~~~l~~~l~~~~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~~~e 766 (929)
|.++.+++..+.|++..+.. +.. +...|.++=..+...|+|++
T Consensus 913 ~~~~~vi~fa~lAi~~~~~~~~~~------------------------------------~~~l~~~iFk~~L~l~~ye~ 956 (1139)
T 4fhn_B 913 SAYIDALEFSLLADASKETDDEDL------------------------------------SIAITHETLKTACAAGKFDA 956 (1139)
T ss_dssp SCCHHHHHHHHHHHHHCCSCCHHH------------------------------------HHHHHHHHHHHHHHHCCSGG
T ss_pred CCHHHHHHHHHHHHHhccCCChhh------------------------------------HHHHHHHHHHHHHhhCCHHH
Confidence 77777777777666543322 100 01235666667777888888
Q ss_pred HHHHHHHHHcC-CCHHHHHHHHHHHHHhCCH
Q 002379 767 AENCYINALDI-KHTRAHQGLARVYYLKNEL 796 (929)
Q Consensus 767 A~~~~~~al~~-~~~~a~~~la~~~~~~g~~ 796 (929)
|...+...-.. ...+.+..+.......|+.
T Consensus 957 Ay~aL~~~pd~~~r~~cLr~LV~~lce~~~~ 987 (1139)
T 4fhn_B 957 AHVALMVLSTTPLKKSCLLDFVNQLTKQGKI 987 (1139)
T ss_dssp GGHHHHHHHHSSSCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHhCCCh
Confidence 87776544322 2234444454545555443
No 294
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=73.88 E-value=9.8 Score=42.04 Aligned_cols=98 Identities=11% Similarity=-0.014 Sum_probs=71.9
Q ss_pred ChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccC----CHhHHHHHHHHHHHhccHHHHHHHHHHHHhhcCCchhhhcccc
Q 002379 514 LSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL----SVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVS 589 (929)
Q Consensus 514 ~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~----~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 589 (929)
-..++..+|..|.+.|+++.|.+.|.++..... ..+.+.....+++..+++..+...+.++.........+..+..
T Consensus 130 ~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~ 209 (429)
T 4b4t_R 130 QAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNR 209 (429)
T ss_dssp CSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHH
Confidence 456889999999999999999999999875443 3445777788888999999999999998776544332322223
Q ss_pred HHHHHHHHHHhhcccchHHHHH
Q 002379 590 GDHLVKLLNHHVRSWSPADCWI 611 (929)
Q Consensus 590 a~~ll~~~~~~~~~~~~A~~~l 611 (929)
.....|..+...++|..|...+
T Consensus 210 lk~~~gl~~l~~r~f~~Aa~~f 231 (429)
T 4b4t_R 210 YKTYYGIHCLAVRNFKEAAKLL 231 (429)
T ss_dssp HHHHHHHGGGGTSCHHHHHHHH
T ss_pred HHHHHHHHHHHhChHHHHHHHH
Confidence 4445666667777887775544
No 295
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=73.17 E-value=9.5 Score=42.66 Aligned_cols=141 Identities=13% Similarity=0.095 Sum_probs=59.0
Q ss_pred HHHHhcCHHHHHHHHHHHH-----------hcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHHHH
Q 002379 649 LLLRLNCQKAAMRCLRLAR-----------NHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYIL 717 (929)
Q Consensus 649 ~~~~~g~~~~A~~~l~~al-----------~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~l~~~l 717 (929)
.++..+++++|..+-...+ .+++-.+..|++++.++...|+..+..........+.|.. ...+
T Consensus 145 ~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~L------l~~~ 218 (523)
T 4b4t_S 145 FLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTM------MKFL 218 (523)
T ss_dssp ----------------------------------------------------------CHHHHHHHHTHH------HHHH
T ss_pred HHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHH------HHHH
Confidence 3456778888877665543 1233346678888888888887766554444444333311 1111
Q ss_pred HhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcCC----C---HHHHHHHHHHH
Q 002379 718 ADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIK----H---TRAHQGLARVY 790 (929)
Q Consensus 718 ~~~~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~----~---~~a~~~la~~~ 790 (929)
....+.... ...+..++.+-..|...+.+++|.....++.-.. + ...++.+|+++
T Consensus 219 rta~lr~D~------------------~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~ 280 (523)
T 4b4t_S 219 KIASLKHDN------------------ETKAMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKIN 280 (523)
T ss_dssp HHCCSCSSS------------------CHHHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHhcccCc------------------chhHHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHH
Confidence 111111000 0123567778888999999999999998885331 1 24567789999
Q ss_pred HHhCCHHHHHHHHHHHHHHccCC
Q 002379 791 YLKNELKAAYDEMTKLLEKAQYS 813 (929)
Q Consensus 791 ~~~g~~~~A~~~~~~al~~~p~~ 813 (929)
..+++|.+|.+.+..++...|.+
T Consensus 281 a~q~~Y~eA~~~L~~A~rkap~~ 303 (523)
T 4b4t_S 281 AIQLDYSTANEYIIAAIRKAPHN 303 (523)
T ss_dssp HHTTCHHHHHHHHHHHTSSCSCS
T ss_pred HHhccHHHHHHHHHHHHHhCCcc
Confidence 99999999999999999887754
No 296
>2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=72.55 E-value=2.7 Score=36.20 Aligned_cols=34 Identities=18% Similarity=0.214 Sum_probs=31.6
Q ss_pred CChhHHHHHHHHhchhChHhHHHHHHHHHHhhcC
Q 002379 286 FCPGIVLELLSFANRFCCEEMKSACDAHLASLVG 319 (929)
Q Consensus 286 ~~~~~~~~ll~~A~~~~~~~l~~~C~~~l~~~~~ 319 (929)
++++|++.++.+|+.|+++.|+..|.+|+.....
T Consensus 8 L~~~NCl~i~~~A~~~~~~~L~~~a~~fi~~nF~ 41 (105)
T 2eqx_A 8 VQVGNCLQVMWLADRHSDPELYTAAKHCAKTHLA 41 (105)
T ss_dssp CCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTCH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 8899999999999999999999999999987654
No 297
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=71.44 E-value=42 Score=34.90 Aligned_cols=151 Identities=15% Similarity=0.049 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHcC----CCH----HHHHHHHHHHHHhCC--HHHHHHHHHHHHHHccCCHHHHH
Q 002379 749 QALNNLGSIYVECGKLDQAENCYINALDI----KHT----RAHQGLARVYYLKNE--LKAAYDEMTKLLEKAQYSASAFE 818 (929)
Q Consensus 749 ~a~~~lg~~~~~~g~~~eA~~~~~~al~~----~~~----~a~~~la~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~ 818 (929)
+.+..+..=|...+++++|++.+...... +.. +.-..+..+|.+.+. -++.+..+.+++...|.......
T Consensus 34 Q~~Rtl~~Ry~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~ 113 (312)
T 2wpv_A 34 QTLRTIANRYVRSKSYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLK 113 (312)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHH
Confidence 34566677788889999998886554332 222 222223344444433 13334444444444332211000
Q ss_pred HHhhhCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHH----------------Hh---cCCCchH
Q 002379 819 KRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKA----------------IA---FKPDLQM 879 (929)
Q Consensus 819 ~lg~~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~ka----------------l~---~~p~~~~ 879 (929)
.. ..+|+.+-.+.-...-.++..+..+|..|...|++.+|...|-.. .+ -.|....
T Consensus 114 ~f-----i~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~e~d 188 (312)
T 2wpv_A 114 DV-----ITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIEDSTVA 188 (312)
T ss_dssp HH-----HHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCHHHHH
T ss_pred HH-----HHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCcchHH
Confidence 00 133444444332222367889999999999999999999877311 01 1122223
Q ss_pred HH-HH-HHHHHHcCCHHHHHHHHHHHh
Q 002379 880 LH-LR-AAFYESIGDLTSAIRDSQAAL 904 (929)
Q Consensus 880 ~~-~l-a~~~~~~g~~~~A~~~~~~al 904 (929)
.+ .+ ..-|...|+...|...|....
T Consensus 189 lf~~RaVL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 189 EFFSRLVFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHHHHHHHHHHHTTBHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 33 44 345667899999998887664
No 298
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=71.02 E-value=79 Score=32.81 Aligned_cols=27 Identities=22% Similarity=0.186 Sum_probs=20.5
Q ss_pred CChHHHHHHHHHHHHhcCHHHHHHHHH
Q 002379 638 GKSFLRFRQSLLLLRLNCQKAAMRCLR 664 (929)
Q Consensus 638 ~~~~~~~~lg~~~~~~g~~~~A~~~l~ 664 (929)
.++..+..+|..|...|++.+|..+|-
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 567778888888888888888777663
No 299
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=70.69 E-value=4.4 Score=45.92 Aligned_cols=81 Identities=11% Similarity=0.080 Sum_probs=59.1
Q ss_pred EEEEEcCeEEEeehhHHhccCHHHHHHhcC-----CCCcCCCCeeEecCCCCCHHHHHHHhhhHcc-CCCCCCChh-HHH
Q 002379 220 VTFCVRDKEISFVRNKIASLSSPFKAMLYG-----GFVESKRKTIDFSHDGVSVEGLRAVEVYTRT-SRVDLFCPG-IVL 292 (929)
Q Consensus 220 v~~~v~~~~~~~hr~iLaa~S~~F~~mf~~-----~~~e~~~~~i~~~~~~~~~~~~~~~l~~~Yt-~~~~~~~~~-~~~ 292 (929)
|++-|||..|...+..|..-- .+||.. .+.....+++-| |=+|..|+.+|+|+.| |++. .+.+ .+.
T Consensus 54 v~lNVgG~~f~t~~~tL~~~p---~s~l~~~~~~~~~~~~~~~~~f~---DR~~~~F~~IL~~~r~~g~l~-~p~~~~~~ 126 (514)
T 2r9r_B 54 VVINISGLRFETQLKTLAQFP---ETLLGDPKKRMRYFDPLRNEYFF---DRNRPSFDAILYYYQSGGRLR-RPVNVPLD 126 (514)
T ss_dssp EEEEETTEEEEEEHHHHTTST---TSTTTCHHHHGGGEETTTTEEEE---CSCHHHHHHHHHHHHHTSCCC-CCTTSCHH
T ss_pred EEEEeCCEEEEecHHHHhcCC---CCcccccccCCcccCCCCCCEEE---cCChHHHHHHHHHHhcCCccc-cCCcccHH
Confidence 999999999999999996431 223221 112234567777 6699999999999999 9998 5444 345
Q ss_pred HHHHHhchhChHhHH
Q 002379 293 ELLSFANRFCCEEMK 307 (929)
Q Consensus 293 ~ll~~A~~~~~~~l~ 307 (929)
.++.=|+.|+++++.
T Consensus 127 ~~~~E~~f~~i~~~~ 141 (514)
T 2r9r_B 127 IFSEEIRFYELGEEA 141 (514)
T ss_dssp HHHHHHHHTTCCHHH
T ss_pred HHHHHHHhcCCCHHH
Confidence 678889999997653
No 300
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=67.77 E-value=4.8 Score=44.99 Aligned_cols=137 Identities=10% Similarity=-0.010 Sum_probs=57.1
Q ss_pred HHHHcCCHHHHHHHHHHHHc--C-C----------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHhhh
Q 002379 757 IYVECGKLDQAENCYINALD--I-K----------HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEY 823 (929)
Q Consensus 757 ~~~~~g~~~eA~~~~~~al~--~-~----------~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 823 (929)
.++..+++++|.++-...+. . . ....|+..+.++...|+.............+-|.-
T Consensus 145 ~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~L---------- 214 (523)
T 4b4t_S 145 FLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTM---------- 214 (523)
T ss_dssp ----------------------------------------------------------CHHHHHHHHTHH----------
T ss_pred HHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHH----------
Confidence 34567788888877665542 1 1 12456666666666666555443333333222111
Q ss_pred CCHHHHHHHHHHHH-hcCC-CCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-----h--H-HHHHHHHHHHcCCH
Q 002379 824 SDREMAKNDLNMAT-QLDP-LRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDL-----Q--M-LHLRAAFYESIGDL 893 (929)
Q Consensus 824 g~~~~A~~~~~~al-~l~p-~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~-----~--~-~~~la~~~~~~g~~ 893 (929)
...++.|. ..|+ ..+..++.+-..|...+.|++|.....++. .|.. . . .|+.|.++.-+++|
T Consensus 215 ------l~~~rta~lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y 286 (523)
T 4b4t_S 215 ------MKFLKIASLKHDNETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDY 286 (523)
T ss_dssp ------HHHHHHCCSCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ------HHHHHHHhcccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccH
Confidence 11122221 2222 223456677778889999999999999884 3322 1 1 22669999999999
Q ss_pred HHHHHHHHHHhccCCCCH
Q 002379 894 TSAIRDSQAALCLDPNHM 911 (929)
Q Consensus 894 ~~A~~~~~~al~l~P~~~ 911 (929)
.+|.+++..|+...|.+.
T Consensus 287 ~eA~~~L~~A~rkap~~~ 304 (523)
T 4b4t_S 287 STANEYIIAAIRKAPHNS 304 (523)
T ss_dssp HHHHHHHHHHTSSCSCSS
T ss_pred HHHHHHHHHHHHhCCcch
Confidence 999999999999887654
No 301
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=66.97 E-value=1.5e+02 Score=32.43 Aligned_cols=102 Identities=14% Similarity=-0.045 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchhccCchhHHHHH
Q 002379 674 HERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNN 753 (929)
Q Consensus 674 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~l~~~l~~~~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~ 753 (929)
......++.++...|++.+|...+.....-.-.. . . . ....+.+..
T Consensus 137 arl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~---------------~--~------~-----------~~kve~~l~ 182 (445)
T 4b4t_P 137 ARVTKDLVEIKKEEGKIDEAADILCELQVETYGS---------------M--E------M-----------SEKIQFILE 182 (445)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSS---------------S--C------H-----------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhc---------------c--c------H-----------HHHHHHHHH
Confidence 3455678889999999999988887765311000 0 0 0 001345667
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHcC-----CCH----HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 002379 754 LGSIYVECGKLDQAENCYINALDI-----KHT----RAHQGLARVYYLKNELKAAYDEMTKLLEK 809 (929)
Q Consensus 754 lg~~~~~~g~~~eA~~~~~~al~~-----~~~----~a~~~la~~~~~~g~~~~A~~~~~~al~~ 809 (929)
...++...+++..|...+.++... .++ ..+...|..+...++|.+|...|..+...
T Consensus 183 q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 183 QMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 778888899999999888887432 333 35667788888999999999998888764
No 302
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus}
Probab=65.50 E-value=2.3 Score=38.72 Aligned_cols=34 Identities=12% Similarity=0.013 Sum_probs=31.6
Q ss_pred cCChhhHHHHHHHHHHhChHHHHHHHHHHHHhchh
Q 002379 318 VGDIEDALILIDYGLEERATLLVASCLQVLLRELP 352 (929)
Q Consensus 318 ~~~~~n~~~~~~~a~~~~~~~L~~~c~~~i~~~~~ 352 (929)
++ .+|+..++..|..++.+.|++.|.+|+.+++.
T Consensus 101 i~-~~~v~~ll~~A~~~~i~~L~~~C~~~l~~~l~ 134 (138)
T 2z8h_A 101 LS-KDNVDEVCRCVEFLSVHNIEESCFQFLKFKFL 134 (138)
T ss_dssp CC-TTTHHHHHHHHHHHTCGGGHHHHHHHTTCCCS
T ss_pred cC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc
Confidence 55 89999999999999999999999999998875
No 303
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Probab=64.08 E-value=5.5 Score=35.38 Aligned_cols=32 Identities=6% Similarity=0.179 Sum_probs=29.3
Q ss_pred cCChhhHHHHHHHHHHhChHHHHHHHHHHHHhc
Q 002379 318 VGDIEDALILIDYGLEERATLLVASCLQVLLRE 350 (929)
Q Consensus 318 ~~~~~n~~~~~~~a~~~~~~~L~~~c~~~i~~~ 350 (929)
++ .+|+..++..|..++.+.|++.|.+|+.++
T Consensus 95 ~~-~~~~~~ll~~A~~~~i~~L~~~c~~~l~~~ 126 (127)
T 1r29_A 95 LR-EGNIMAVMATAMYLQMEHVVDTCRKFIKAS 126 (127)
T ss_dssp CC-TTTHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred cC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 45 899999999999999999999999999764
No 304
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus}
Probab=62.88 E-value=3 Score=37.71 Aligned_cols=36 Identities=11% Similarity=-0.016 Sum_probs=28.5
Q ss_pred cCChhhHHHHHHHHHHhChHHHHHHHHHHHHhchhhh
Q 002379 318 VGDIEDALILIDYGLEERATLLVASCLQVLLRELPSS 354 (929)
Q Consensus 318 ~~~~~n~~~~~~~a~~~~~~~L~~~c~~~i~~~~~~v 354 (929)
++ .+|+..++..|+.++.+.|++.|.+|+.+++...
T Consensus 87 i~-~~~v~~ll~~A~~l~i~~L~~~C~~~l~~~l~~~ 122 (135)
T 2yy9_A 87 LT-SGNRDQVLLAAKELRVPEAVELCQSFQPQTSVGQ 122 (135)
T ss_dssp CC-TTTHHHHHHHHHHTTCHHHHHHHHHCCC------
T ss_pred CC-HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhccCC
Confidence 45 8999999999999999999999999999887643
No 305
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Probab=58.56 E-value=6.9 Score=34.05 Aligned_cols=30 Identities=7% Similarity=-0.050 Sum_probs=27.8
Q ss_pred cCChhhHHHHHHHHHHhChHHHHHHHHHHHH
Q 002379 318 VGDIEDALILIDYGLEERATLLVASCLQVLL 348 (929)
Q Consensus 318 ~~~~~n~~~~~~~a~~~~~~~L~~~c~~~i~ 348 (929)
++ .+|+..++..|..++.+.|++.|.+|+.
T Consensus 86 ~~-~~~v~~ll~~A~~~~i~~L~~~C~~~l~ 115 (116)
T 2vpk_A 86 LD-SWNVKEIHQAADYLKVEEVVTKCKIKME 115 (116)
T ss_dssp CC-TTTHHHHHHHHHHTTCHHHHHHHHHHHC
T ss_pred cC-HHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 45 8999999999999999999999999985
No 306
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A
Probab=58.03 E-value=7.8 Score=33.95 Aligned_cols=30 Identities=7% Similarity=0.056 Sum_probs=27.7
Q ss_pred cCChhhHHHHHHHHHHhChHHHHHHHHHHHH
Q 002379 318 VGDIEDALILIDYGLEERATLLVASCLQVLL 348 (929)
Q Consensus 318 ~~~~~n~~~~~~~a~~~~~~~L~~~c~~~i~ 348 (929)
++ .+|+..++..|..++.+.|++.|.+|+.
T Consensus 88 i~-~~~~~~ll~~A~~l~i~~L~~~C~~~l~ 117 (119)
T 2q81_A 88 LS-PENVDDVLAVATFLQMQDIITACHALKS 117 (119)
T ss_dssp CC-TTTHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred cC-HHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 45 8999999999999999999999999974
No 307
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=57.64 E-value=1.9e+02 Score=30.30 Aligned_cols=29 Identities=3% Similarity=0.043 Sum_probs=21.3
Q ss_pred HHHHHHhhHHHHhcccHHHHHHHHHHHHh
Q 002379 419 MLALHQLGCVMFEREEYKDACYYFEAAAD 447 (929)
Q Consensus 419 a~~~~~lG~~~~~~g~y~~A~~~f~~al~ 447 (929)
...+..+..-|.++++|++|++.+-....
T Consensus 35 HQ~~RTi~~Ry~~~k~y~eAidLL~~GA~ 63 (336)
T 3lpz_A 35 AQETRLVAARYSKQGNWAAAVDILASVSQ 63 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence 34555677789999999999997655433
No 308
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=56.97 E-value=0.006 Score=66.74 Aligned_cols=250 Identities=13% Similarity=0.005 Sum_probs=138.7
Q ss_pred CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHHH
Q 002379 637 PGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYI 716 (929)
Q Consensus 637 p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~l~~~ 716 (929)
-+.+.+|..+|.+++..+...+|+..|-+| +++..+...-.+..+.|++++=+.+++.+-+.-.+...-..+.++
T Consensus 51 ~n~p~VWs~LgkAqL~~~~v~eAIdsyIkA-----~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~IDteLi~a 125 (624)
T 3lvg_A 51 CNEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFA 125 (624)
T ss_dssp CCCCCCSSSHHHHTTTSSSCTTTTTSSCCC-----SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTTHHHHHH
T ss_pred hCCccHHHHHHHHHHccCchHHHHHHHHhC-----CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence 467889999999999999999999888553 333344455566678899999999888877665444333456666
Q ss_pred HHhcCCCC-----------CChHHHHHHHHHHhhchhcc--C-chhHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCHHH
Q 002379 717 LADTNLDP-----------ESSTYVIQLLEEALRCPSDG--L-RKGQALNNLGSIYVECGKLDQAENCYINALDIKHTRA 782 (929)
Q Consensus 717 l~~~~~~~-----------~~~~~a~~~~e~Al~~~~~a--l-~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~~~a 782 (929)
|++.+.-. .+... +|+---....|+.+ + ....-|..|+.++..+|+|..|++.-++ -+++.+
T Consensus 126 yAk~~rL~elEefl~~~N~A~iq~-VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArK---Ans~kt 201 (624)
T 3lvg_A 126 LAKTNRLAELEEFINGPNNAHIQQ-VGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARK---ANSTRT 201 (624)
T ss_dssp HHTSCSSSTTTSTTSCCSSSCTHH-HHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTT---CCSSCS
T ss_pred HHhhCcHHHHHHHHcCCCcccHHH-HHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHh---cCChhH
Confidence 66655110 01000 11000000001110 0 0012234455555555665555543322 245556
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHccCC-HHHHHHHhhhCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhcCCHH
Q 002379 783 HQGLARVYYLKNELKAAYDEMTKLLEKAQYS-ASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEV 861 (929)
Q Consensus 783 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~lg~~g~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~ 861 (929)
|-....+....+++.-|.-.--..+- .++. .+.-...-..|-+++-+..++.++.+.......+..||.+|.+- +.+
T Consensus 202 WKeV~~ACvd~~EfrLAqicGLniIv-hadeL~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYsKY-~Pe 279 (624)
T 3lvg_A 202 WKEVCFACVDGKEFRLAQMCGLHIVV-HADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF-KPQ 279 (624)
T ss_dssp HHHHTHHHHHSCTTTTTTHHHHHHHC-CSSCCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHSS-CTT
T ss_pred HHHHHHHHhCchHHHHHHHhcchhcc-cHHHHHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhc-CHH
Confidence 66666666666666555443322221 1111 11111111357778888999999988888888899999777654 445
Q ss_pred HHHHHHHHH---------HhcCCCchHHHHHHHHHHHcCCHHHHH
Q 002379 862 EAVEELSKA---------IAFKPDLQMLHLRAAFYESIGDLTSAI 897 (929)
Q Consensus 862 eA~~~l~ka---------l~~~p~~~~~~~la~~~~~~g~~~~A~ 897 (929)
+-.+.++-- +....+...|--+-..|.+-.+++.|.
T Consensus 280 KlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 280 KMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp HHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 545444321 111112223335566677778888665
No 309
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}
Probab=55.78 E-value=5.3 Score=35.09 Aligned_cols=32 Identities=13% Similarity=0.022 Sum_probs=27.3
Q ss_pred cCChhhHHHHHHHHHHhChHHHHHHHHHHHHhc
Q 002379 318 VGDIEDALILIDYGLEERATLLVASCLQVLLRE 350 (929)
Q Consensus 318 ~~~~~n~~~~~~~a~~~~~~~L~~~c~~~i~~~ 350 (929)
++ .+|+..++..|+.++.+.|++.|.+|+.++
T Consensus 86 ~~-~~~v~~ll~~A~~~~i~~L~~~C~~~l~~~ 117 (119)
T 3b84_A 86 LT-SGNRDQVLLAARELRVPEAVELCQSFKPKT 117 (119)
T ss_dssp CC-TTTHHHHHHHHHHTTCHHHHHHHHHCC---
T ss_pred cC-HHHHHHHHHHHHHhCcHHHHHHHHHHHHHc
Confidence 45 899999999999999999999999998765
No 310
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A
Probab=55.34 E-value=11 Score=33.05 Aligned_cols=31 Identities=23% Similarity=0.141 Sum_probs=28.6
Q ss_pred cCChhhHHHHHHHHHHhChHHHHHHHHHHHHh
Q 002379 318 VGDIEDALILIDYGLEERATLLVASCLQVLLR 349 (929)
Q Consensus 318 ~~~~~n~~~~~~~a~~~~~~~L~~~c~~~i~~ 349 (929)
++ .+|+..++..|+.++.+.|++.|.+|+.+
T Consensus 89 ~~-~~~~~~ll~~A~~~~i~~L~~~c~~~l~~ 119 (121)
T 1buo_A 89 AK-AEDLDDLLYAAEILEIEYLEEQCLKMLET 119 (121)
T ss_dssp CC-GGGHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CC-HHHHHHHHHHHHHHCCHHHHHHHHHHHHH
Confidence 45 89999999999999999999999999875
No 311
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=54.62 E-value=23 Score=27.92 Aligned_cols=37 Identities=11% Similarity=0.128 Sum_probs=21.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHH
Q 002379 883 RAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNR 919 (929)
Q Consensus 883 la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~ 919 (929)
+|..+...|++++|..+|-+|+.+.|+-.+....+.+
T Consensus 23 ~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~LL~i~q~ 59 (73)
T 3ax2_A 23 LGEELLAQGDYEKGVDHLTNAIAVCGQPQQLLQVLQQ 59 (73)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 3555555666666666666666666655555554443
No 312
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A
Probab=52.87 E-value=12 Score=32.70 Aligned_cols=29 Identities=10% Similarity=0.099 Sum_probs=27.1
Q ss_pred cCChhhHHHHHHHHHHhChHHHHHHHHHHH
Q 002379 318 VGDIEDALILIDYGLEERATLLVASCLQVL 347 (929)
Q Consensus 318 ~~~~~n~~~~~~~a~~~~~~~L~~~c~~~i 347 (929)
++ .+|+..++..|..++.+.|++.|.+|+
T Consensus 91 ~~-~~~~~~ll~~A~~~~i~~L~~~C~~~L 119 (120)
T 2if5_A 91 VS-TANVGDILSAARLLEIPAVSHVCADLL 119 (120)
T ss_dssp CC-GGGHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cC-HHHHHHHHHHHHHhCCHHHHHHHHHHh
Confidence 45 899999999999999999999999987
No 313
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}
Probab=51.82 E-value=9.6 Score=35.74 Aligned_cols=34 Identities=12% Similarity=0.156 Sum_probs=30.8
Q ss_pred CChhHHHHHHHHhchhChHhHHHHHHHHHHhhcC
Q 002379 286 FCPGIVLELLSFANRFCCEEMKSACDAHLASLVG 319 (929)
Q Consensus 286 ~~~~~~~~ll~~A~~~~~~~l~~~C~~~l~~~~~ 319 (929)
++.+++.+++.+|++|+++.|+..|.+++.....
T Consensus 132 l~~~n~~~~~~~A~~~~~~~L~~~~~~~i~~~~~ 165 (172)
T 3htm_A 132 LSVENAAEILILADLHSADQLKTQAVDFINYHAT 165 (172)
T ss_dssp CCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTC-
T ss_pred CCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 6778999999999999999999999999998765
No 314
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=51.18 E-value=0.12 Score=56.62 Aligned_cols=259 Identities=13% Similarity=0.039 Sum_probs=159.0
Q ss_pred CCchhhhHHHHHHhhhh--HHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHhcccCCHhHHHHHHHHHH
Q 002379 482 KPTGWMYQERSLYNLGR--EKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFI 559 (929)
Q Consensus 482 ~~~~~~~~~~~l~~~~~--~Ai~~~~kal~l~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~ 559 (929)
.|..|...|.+.+..++ +||..|-+| +++..|...-.+..+.|+|++-+.++.-+-+....|..-..+..+|.
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA-----~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~IDteLi~ayA 127 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALA 127 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCC-----SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTTHHHHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhC-----CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 46778888888777766 777776543 34444445555566778888888888877654445555555666777
Q ss_pred HhccHHHHHHHHHHHHhhcCCchhhhccccHHHHHHHHHHhhcccchHHHHHHhhhccccccc-cccHHHHHHHHhc--C
Q 002379 560 AADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDD-IGSLAVINQMLIN--D 636 (929)
Q Consensus 560 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~ll~~~~~~~~~~~~A~~~l~l~~~~~~~~~-~~~l~~~~~al~~--~ 636 (929)
+.++..+-.+.+ ..|+.. -....|.-....|.|+.|.-++.....|..+.. +-.+..|+.+++. .
T Consensus 128 k~~rL~elEefl-----~~~N~A-------~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArK 195 (624)
T 3lvg_A 128 KTNRLAELEEFI-----NGPNNA-------HIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARK 195 (624)
T ss_dssp TSCSSSTTTSTT-----SCCSSS-------CTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTT
T ss_pred hhCcHHHHHHHH-----cCCCcc-------cHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 777654422221 123333 223456666667777777444433222222110 1113333444433 3
Q ss_pred CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccch-HHHHHHHH
Q 002379 637 PGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAY 715 (929)
Q Consensus 637 p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~~~~~l~~ 715 (929)
.+++..|-....+....+++.-|..+--..+-. |+. +-.+...|...|.++|-+..++.++.+..-+ ..+..+|.
T Consensus 196 Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvh-ade---L~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaI 271 (624)
T 3lvg_A 196 ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH-ADE---LEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAI 271 (624)
T ss_dssp CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC-SSC---CSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHH
T ss_pred cCChhHHHHHHHHHhCchHHHHHHHhcchhccc-HHH---HHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHH
Confidence 456778888888888888888777665554433 222 1224556788999999999999999988888 88888888
Q ss_pred HHHhcCCCCCChHHHHHHHHHHhhchhccCc---------hhHHHHHHHHHHHHcCCHHHHHHH
Q 002379 716 ILADTNLDPESSTYVIQLLEEALRCPSDGLR---------KGQALNNLGSIYVECGKLDQAENC 770 (929)
Q Consensus 716 ~l~~~~~~~~~~~~a~~~~e~Al~~~~~al~---------~~~a~~~lg~~~~~~g~~~eA~~~ 770 (929)
.|..-. |+ .+-+=++.|...++ ....|..+..+|..-.+|+.|...
T Consensus 272 LYsKY~--Pe-------KlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~lt 326 (624)
T 3lvg_A 272 LYSKFK--PQ-------KMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 326 (624)
T ss_dssp HHHSSC--TT-------HHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHT
T ss_pred HHHhcC--HH-------HHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHH
Confidence 887653 22 22233333333322 136788899999999999988643
No 315
>2plx_B Peptide inhibitor; helix-turn-helix, hydrolase; HET: FLC; 1.56A {Bos taurus}
Probab=47.92 E-value=13 Score=21.49 Aligned_cols=21 Identities=19% Similarity=0.380 Sum_probs=18.0
Q ss_pred HHHHHHHHhChHHHHHHHHHH
Q 002379 326 ILIDYGLEERATLLVASCLQV 346 (929)
Q Consensus 326 ~~~~~a~~~~~~~L~~~c~~~ 346 (929)
.++-+|..|+.++|.+.|++-
T Consensus 3 kvmcyaqrhsspellrrcldn 23 (26)
T 2plx_B 3 KVMCYAQRHSSPELLRRCLDN 23 (26)
T ss_dssp HHHHHHBCCCCHHHHHHHHHH
T ss_pred eEEeehhhcCCHHHHHHHHhc
Confidence 467789999999999999874
No 316
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=44.84 E-value=98 Score=24.99 Aligned_cols=32 Identities=6% Similarity=-0.036 Sum_probs=25.2
Q ss_pred HHHHHHHHhhHHHHhcccHHHHHHHHHHHHhc
Q 002379 417 QRMLALHQLGCVMFEREEYKDACYYFEAAADA 448 (929)
Q Consensus 417 ~~a~~~~~lG~~~~~~g~y~~A~~~f~~al~~ 448 (929)
++|..+...|...=..|+|++|+.+|..+++.
T Consensus 17 ~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~ 48 (83)
T 2w2u_A 17 EMARKYAINAVKADKEGNAEEAITNYKKAIEV 48 (83)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 45556667777778889999999999888875
No 317
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=43.77 E-value=5.1e+02 Score=31.30 Aligned_cols=370 Identities=12% Similarity=-0.011 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhcccCCHhHHHHHHHHHHHhccHHHHHHHHHHHHhhcCCchhhhccccHHHHHHHH
Q 002379 518 YKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLL 597 (929)
Q Consensus 518 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~ll~~~ 597 (929)
|.....+..++++.+.+.+.|.+.++ ..++..-+.++..+...++- +-+......+...+.......-+........-
T Consensus 233 y~~a~~~ai~LnD~~li~~if~~l~~-~~d~l~ayQiAFdL~~~~~Q-~fL~~v~~~l~~~e~~~kL~~ILsg~~~~~Ly 310 (963)
T 4ady_A 233 YLTLNKVVVNLNDAGLALQLFKKLKE-ENDEGLSAQIAFDLVSSASQ-QLLEILVTELTAQGYDPALLNILSGLPTCDYY 310 (963)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHHSCH-HHHHHHHHHHHHTTCCHHHHHHTTSHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh-cccHHHHHHHHHHHhcccch-HHHHHHHHhccccchhHHHHHHhCCCChHHHH
Q ss_pred HHhhcccchHHHHHHhhhccccccccccHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHH-HHHHHHHHhcCCchHHH
Q 002379 598 NHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAA-MRCLRLARNHSSSEHER 676 (929)
Q Consensus 598 ~~~~~~~~~A~~~l~l~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A-~~~l~~al~~~p~~~~~ 676 (929)
..-..+.+.+.-.+ ++.+...++........-...+..+...|-.... +.....-+-.+.+....
T Consensus 311 l~FL~~~n~~d~~~--------------l~~~K~~ld~r~s~~~~A~~f~Naf~naG~~~D~~l~~~~~Wl~k~~~~~k~ 376 (963)
T 4ady_A 311 NTFLLNNKNIDIGL--------------LNKSKSSLDGKFSLFHTAVSVANGFMHAGTTDNSFIKANLPWLGKAQNWAKF 376 (963)
T ss_dssp HHHHHHHCCCCHHH--------------HHHHHHHSCTTSHHHHHHHHHHHHHHTTTTCCCHHHHHCHHHHHHCCTHHHH
T ss_pred HHHHHhccccchhh--------------HHHHHhhhcchhhHHHHHHHHHHHHHhCCCCcchhhhcchhhhhccchHHHH
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhccchHHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhchh--------ccCchh
Q 002379 677 LVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPS--------DGLRKG 748 (929)
Q Consensus 677 ~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~l~~~l~~~~~~~~~~~~a~~~~e~Al~~~~--------~al~~~ 748 (929)
-...+.-....|+.++++..+.+.+........+...|..++---...+....+...+...+..-. ..++.+
T Consensus 377 sA~aSLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~g 456 (963)
T 4ady_A 377 TATASLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHG 456 (963)
T ss_dssp HHHHHHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHH
T ss_pred HHHHHhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHH
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCHH----HHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHh---
Q 002379 749 QALNNLGSIYVECGKLDQAENCYINALDIKHTR----AHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS--- 821 (929)
Q Consensus 749 ~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~~~----a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg--- 821 (929)
.++ .+|.++.-.++ +++.+.+...+..++.. +-+.+|.++.-.|+.+.....+..+.+...+...-....|
T Consensus 457 AaL-GLGla~~GS~~-eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGl 534 (963)
T 4ady_A 457 ASL-GIGLAAMGSAN-IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLAL 534 (963)
T ss_dssp HHH-HHHHHSTTCCC-HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred HHH-HHHHHhcCCCC-HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHh
Q ss_pred -hhCCHHHHHHHHHHHHhcCC--CCcHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHH-HHHHHHHHcCCHHHHH
Q 002379 822 -EYSDREMAKNDLNMATQLDP--LRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLH-LRAAFYESIGDLTSAI 897 (929)
Q Consensus 822 -~~g~~~~A~~~~~~al~l~p--~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~-~la~~~~~~g~~~~A~ 897 (929)
.+|+.+.+-...+....... ....+-..+|..|...|+...-...+..+..-..++.... .+|......|+.+.+.
T Consensus 535 l~~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~v~ 614 (963)
T 4ady_A 535 INYGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVP 614 (963)
T ss_dssp HTTTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSSHH
T ss_pred hhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHHHH
Q ss_pred HHHHHHhc
Q 002379 898 RDSQAALC 905 (929)
Q Consensus 898 ~~~~~al~ 905 (929)
..++...+
T Consensus 615 rlv~~L~~ 622 (963)
T 4ady_A 615 RIVQLLSK 622 (963)
T ss_dssp HHTTTGGG
T ss_pred HHHHHHHh
No 318
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=43.26 E-value=27 Score=32.35 Aligned_cols=65 Identities=9% Similarity=0.031 Sum_probs=48.6
Q ss_pred CChhHHHHHHHHhchhC---------------hHhHHHHHHHHHHhhcCChhhHHHHHHHHHHhChHHHHHHHHHHHHhc
Q 002379 286 FCPGIVLELLSFANRFC---------------CEEMKSACDAHLASLVGDIEDALILIDYGLEERATLLVASCLQVLLRE 350 (929)
Q Consensus 286 ~~~~~~~~ll~~A~~~~---------------~~~l~~~C~~~l~~~~~~~~n~~~~~~~a~~~~~~~L~~~c~~~i~~~ 350 (929)
++...+..|+..+..-. -..+..-..+|+ .++ .++++.++..|...+...|.+.|.+|+...
T Consensus 49 V~~~iL~kViey~~~h~~~~~~~~~~~~~~~~~~~i~~wD~~F~--~id-~~~l~eLl~AAnyL~I~~Lld~~c~~va~~ 125 (159)
T 2ast_A 49 VNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFL--KVD-QGTLFELILAANYLDIKGLLDVTCKTVANM 125 (159)
T ss_dssp SCHHHHHHHHHHHHHTTTCCC-----------CCCCCHHHHHHT--CSC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCcCCCCcccccccccchhhhhHHHHHHH--cCC-HHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 66667777777665444 122344455566 377 999999999999999999999999999876
Q ss_pred hhh
Q 002379 351 LPS 353 (929)
Q Consensus 351 ~~~ 353 (929)
+..
T Consensus 126 i~g 128 (159)
T 2ast_A 126 IKG 128 (159)
T ss_dssp HSS
T ss_pred HcC
Confidence 653
No 319
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens}
Probab=40.63 E-value=11 Score=34.26 Aligned_cols=29 Identities=14% Similarity=0.028 Sum_probs=26.9
Q ss_pred cCChhhHHHHHHHHHHhChHHHHHHHHHHH
Q 002379 318 VGDIEDALILIDYGLEERATLLVASCLQVL 347 (929)
Q Consensus 318 ~~~~~n~~~~~~~a~~~~~~~L~~~c~~~i 347 (929)
++ .+|+..++..|..++.+.|++.|.+|+
T Consensus 115 i~-~~~v~~ll~~A~~l~i~~L~~~C~~~L 143 (144)
T 2ppi_A 115 LN-EDTIQDVVQAADLLLLTDLKTLCCEFL 143 (144)
T ss_dssp CC-TTTHHHHHHHHHHTTCHHHHHHHHTTC
T ss_pred CC-HHHHHHHHHHHHHhCcHHHHHHHHHHh
Confidence 45 899999999999999999999999875
No 320
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=39.69 E-value=17 Score=37.90 Aligned_cols=34 Identities=12% Similarity=0.156 Sum_probs=30.7
Q ss_pred CChhHHHHHHHHhchhChHhHHHHHHHHHHhhcC
Q 002379 286 FCPGIVLELLSFANRFCCEEMKSACDAHLASLVG 319 (929)
Q Consensus 286 ~~~~~~~~ll~~A~~~~~~~l~~~C~~~l~~~~~ 319 (929)
++.+++..+|.+|++|+++.|+..|.+++...+.
T Consensus 272 ~~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~~~ 305 (312)
T 3hqi_A 272 LSVENAAEILILADLHSADQLKTQAVDFINYHAT 305 (312)
T ss_dssp CCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTC-
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 5778999999999999999999999999998765
No 321
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0
Probab=39.58 E-value=20 Score=31.38 Aligned_cols=50 Identities=14% Similarity=0.096 Sum_probs=37.3
Q ss_pred CChhHHHHHHHHhchhChHhHHHHHHHHHHhhcCChhhHHHHHHHHHHhChHHHHHHHHHHHHh
Q 002379 286 FCPGIVLELLSFANRFCCEEMKSACDAHLASLVGDIEDALILIDYGLEERATLLVASCLQVLLR 349 (929)
Q Consensus 286 ~~~~~~~~ll~~A~~~~~~~l~~~C~~~l~~~~~~~~n~~~~~~~a~~~~~~~L~~~c~~~i~~ 349 (929)
++++.+..+|.+.--=.+ .++ .+|+..++..|..++.+.|++.|.+++..
T Consensus 68 v~~~~f~~ll~fiYtg~~-------------~i~-~~~v~~ll~aA~~l~i~~l~~~C~~~~~~ 117 (119)
T 3m5b_A 68 ISPSTFAQLLNFVYGESV-------------ELQ-PGELRPLQEAARALGVQSLEEACWRARGD 117 (119)
T ss_dssp CCHHHHHHHHHHHTTCCE-------------EEC-GGGHHHHHHHHHHTTCHHHHHHHHHHC--
T ss_pred CCHHHHHHHHHHHcCCCc-------------CcC-HHHHHHHHHHHHHhCCHHHHHHHHHHHhh
Confidence 667776666665432222 356 89999999999999999999999998653
No 322
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens}
Probab=37.67 E-value=13 Score=33.54 Aligned_cols=31 Identities=19% Similarity=0.025 Sum_probs=25.4
Q ss_pred hhhHHHHHHHHHHhChHHHHHHHHHHHHhch
Q 002379 321 IEDALILIDYGLEERATLLVASCLQVLLREL 351 (929)
Q Consensus 321 ~~n~~~~~~~a~~~~~~~L~~~c~~~i~~~~ 351 (929)
.+|+..++..|..++.+.|+..|.+|+.+++
T Consensus 93 ~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l 123 (145)
T 4eoz_A 93 DKMADDLLAAADKYALERLKVMCEDALCSNL 123 (145)
T ss_dssp GGTHHHHHHHHHHTTCHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHHhC
Confidence 7899999999999999999999999998765
No 323
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=37.20 E-value=5.4e+02 Score=31.22 Aligned_cols=108 Identities=10% Similarity=-0.080 Sum_probs=70.2
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-ccch---HHHHHHHHHHHhc
Q 002379 645 RQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISI-ERTF---EAFFLKAYILADT 720 (929)
Q Consensus 645 ~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~-~p~~---~~~~~l~~~l~~~ 720 (929)
.+...+...|.++-|.+ .+..-|.++..-+.+|.++...|++++|..+|++|-.- ..+. .........+...
T Consensus 815 ~l~~~L~~~~~~~~a~e----L~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~ 890 (950)
T 4gq2_M 815 ELVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 890 (950)
T ss_dssp HHHHHHHHTTCHHHHHH----HGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHT
T ss_pred HHHHHHHHhcHHHHHHH----HHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCcc
Confidence 35566777888876543 45677778878899999999999999999999987532 1111 0000011111100
Q ss_pred CCCCCChHHHHHHHHHHhhchhccCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHcC
Q 002379 721 NLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI 777 (929)
Q Consensus 721 ~~~~~~~~~a~~~~e~Al~~~~~al~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~ 777 (929)
+........|.....++...+-++-++..-+.|++.
T Consensus 891 ---------------------e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~ 926 (950)
T 4gq2_M 891 ---------------------HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADAS 926 (950)
T ss_dssp ---------------------TTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ---------------------cccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 000011246778888888889999999888888876
No 324
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D
Probab=37.10 E-value=79 Score=28.41 Aligned_cols=82 Identities=9% Similarity=0.006 Sum_probs=55.1
Q ss_pred HHHHHHhhhHccCCCC--CCChhHHHHHHHHhchhC---------------hHhHHHHHHHHHHhhcCChhhHHHHHHHH
Q 002379 269 EGLRAVEVYTRTSRVD--LFCPGIVLELLSFANRFC---------------CEEMKSACDAHLASLVGDIEDALILIDYG 331 (929)
Q Consensus 269 ~~~~~~l~~~Yt~~~~--~~~~~~~~~ll~~A~~~~---------------~~~l~~~C~~~l~~~~~~~~n~~~~~~~a 331 (929)
..++.+++-.=.+.++ .++...+..|+..+.... -..+...-.+|+. ++ .++++.++..|
T Consensus 25 ~~ik~ml~~~~~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~~~i~~wD~~F~~--vd-~~~l~eLi~AA 101 (141)
T 1fs1_B 25 VTIKTMLEDLGMDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLK--VD-QGTLFELILAA 101 (141)
T ss_dssp HHHHHHHHHTCCSSEECTTCCHHHHHHHHHHHHHHTTCC-----------------HHHHHHTC--SC-HHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCceecCCcCHHHHHHHHHHHHHhccCCCccccccccccchhhhhHHHHHHHh--CC-HHHHHHHHHHH
Confidence 4566666532123333 266777777777776554 1233444455553 77 99999999999
Q ss_pred HHhChHHHHHHHHHHHHhchhh
Q 002379 332 LEERATLLVASCLQVLLRELPS 353 (929)
Q Consensus 332 ~~~~~~~L~~~c~~~i~~~~~~ 353 (929)
...+.+.|.+.|.+++...+..
T Consensus 102 nyL~I~~Lldl~c~~vA~~ikg 123 (141)
T 1fs1_B 102 NYLDIKGLLDVTCKTVANMIKG 123 (141)
T ss_dssp HHHTCHHHHHHHHHHHHHHHTT
T ss_pred HHHhhhHHHHHHHHHHHHHHcC
Confidence 9999999999999999876644
No 325
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=35.54 E-value=58 Score=25.61 Aligned_cols=34 Identities=24% Similarity=0.159 Sum_probs=29.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHH
Q 002379 848 RYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLH 881 (929)
Q Consensus 848 ~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~ 881 (929)
..+|..+...|++++|...|-+|+...|+...+.
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~LL 54 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLL 54 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 4589999999999999999999999999886554
No 326
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=35.38 E-value=1.3e+02 Score=24.14 Aligned_cols=32 Identities=16% Similarity=0.159 Sum_probs=23.9
Q ss_pred HHHHHHHHhhHHHHhcccHHHHHHHHHHHHhc
Q 002379 417 QRMLALHQLGCVMFEREEYKDACYYFEAAADA 448 (929)
Q Consensus 417 ~~a~~~~~lG~~~~~~g~y~~A~~~f~~al~~ 448 (929)
++|..+...|...=..|+|++|+.+|..+++.
T Consensus 9 ~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~ 40 (83)
T 2v6y_A 9 DMARKYAILAVKADKEGKVEDAITYYKKAIEV 40 (83)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 34555666777777888999988888888775
No 327
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=32.84 E-value=4.4e+02 Score=27.42 Aligned_cols=27 Identities=19% Similarity=0.144 Sum_probs=24.1
Q ss_pred CchHHHHHHHHHHHHHcCCHHHHHHHH
Q 002379 671 SSEHERLVYEGWILYDTGHREEALSRA 697 (929)
Q Consensus 671 p~~~~~~~~lg~~~~~~g~~~eA~~~~ 697 (929)
-.+++.+..+|..|++.+++.+|...|
T Consensus 133 ~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 133 AGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp TCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 456899999999999999999999888
No 328
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=32.62 E-value=38 Score=28.18 Aligned_cols=30 Identities=23% Similarity=0.194 Sum_probs=16.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCch
Q 002379 849 YRAAVLMDDQKEVEAVEELSKAIAFKPDLQ 878 (929)
Q Consensus 849 ~la~~~~~~g~~~eA~~~l~kal~~~p~~~ 878 (929)
.+|..+...|+++.|+..|-+|+...|+..
T Consensus 25 ~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP~ 54 (95)
T 1om2_A 25 QLGEELLAQGDYEKGVDHLTNAIAVCGQPQ 54 (95)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHSCHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcCCHH
Confidence 355555555555555555555555555443
No 329
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}
Probab=31.83 E-value=7 Score=34.83 Aligned_cols=32 Identities=9% Similarity=0.070 Sum_probs=22.8
Q ss_pred cCChhhHHHHHHHHHHhChHHHHHHHHHHHHhc
Q 002379 318 VGDIEDALILIDYGLEERATLLVASCLQVLLRE 350 (929)
Q Consensus 318 ~~~~~n~~~~~~~a~~~~~~~L~~~c~~~i~~~ 350 (929)
++ .+|+..++..|..++.+.|++.|.+|+.+.
T Consensus 96 i~-~~~~~~ll~~A~~~~i~~l~~~C~~~L~~~ 127 (129)
T 3ga1_A 96 MN-VGDQDLLMYTAGFLQIQEIMEKGTEFFLKV 127 (129)
T ss_dssp CC-TTTHHHHHHHHHHTTBTTSSCC--------
T ss_pred cC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 55 899999999999999999999999998764
No 330
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=30.65 E-value=1.8e+02 Score=30.41 Aligned_cols=44 Identities=14% Similarity=0.036 Sum_probs=32.9
Q ss_pred HHHHHHHHHHhc-----CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHh
Q 002379 499 EKIVDLNYASEL-----DPTLSFPYKYRAVAKMEEGQIRAAISEIDRII 542 (929)
Q Consensus 499 ~Ai~~~~kal~l-----~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al 542 (929)
.++..|.+|+.. +-....+|.++|-.+++.+++.+|+..+..+-
T Consensus 275 ~~l~L~~~AI~sa~~yY~n~HvYPYtylgGy~yR~~~~reAl~~WA~Aa 323 (472)
T 3re2_A 275 PAEELFKEAITVAKREYSDHHIYPYTYLGGYYYRKKKYYEAIASWVDAG 323 (472)
T ss_dssp CHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccCCccchhhhhhhhhhcchHHHHHHHHHHHH
Confidence 456666666643 34567888888999999999999988887764
No 331
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=30.10 E-value=78 Score=25.99 Aligned_cols=31 Identities=10% Similarity=0.042 Sum_probs=24.7
Q ss_pred HHHHHHHhhHHHHhcccHHHHHHHHHHHHhc
Q 002379 418 RMLALHQLGCVMFEREEYKDACYYFEAAADA 448 (929)
Q Consensus 418 ~a~~~~~lG~~~~~~g~y~~A~~~f~~al~~ 448 (929)
.|-.+-..+..++..|.|++||++.++|...
T Consensus 14 ~AH~~~RrAe~ll~~gkydeAIech~kAa~y 44 (97)
T 2crb_A 14 LAHQQSRRADRLLAAGKYEEAISCHRKATTY 44 (97)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhhHhhhHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 3445567788899999999999999988753
No 332
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=30.04 E-value=2.3e+02 Score=34.53 Aligned_cols=75 Identities=13% Similarity=0.058 Sum_probs=58.4
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-CC----------------------chHHHHHHHHHHHHH
Q 002379 630 NQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNH-SS----------------------SEHERLVYEGWILYD 686 (929)
Q Consensus 630 ~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~-~p----------------------~~~~~~~~lg~~~~~ 686 (929)
...+..-|.++..-+.+|.++...|++++|..+|++|-.- .. .....|.....++.+
T Consensus 830 ~eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e~~~~~~~YY~hV~~LFE~ 909 (950)
T 4gq2_M 830 MQLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFE 909 (950)
T ss_dssp HHHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTTTCSHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCcccccchhHHHHHHHHHHHHh
Confidence 4556667888888899999999999999999999987421 00 012355667888888
Q ss_pred cCCHHHHHHHHHHHHhhc
Q 002379 687 TGHREEALSRAEKSISIE 704 (929)
Q Consensus 687 ~g~~~eA~~~~~~al~~~ 704 (929)
.+-++-++...+.|++.-
T Consensus 910 ~~a~~~vi~fA~lAI~~~ 927 (950)
T 4gq2_M 910 ESAYIDALEFSLLADASK 927 (950)
T ss_dssp TTCHHHHHHHHHHHHHTC
T ss_pred cCCHHHHHHHHHHHHhhc
Confidence 999999999999999753
No 333
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B
Probab=28.25 E-value=36 Score=34.17 Aligned_cols=33 Identities=12% Similarity=-0.016 Sum_probs=29.7
Q ss_pred cCChhhHHHHHHHHHHhChHHHHHHHHHHHHhch
Q 002379 318 VGDIEDALILIDYGLEERATLLVASCLQVLLREL 351 (929)
Q Consensus 318 ~~~~~n~~~~~~~a~~~~~~~L~~~c~~~i~~~~ 351 (929)
++ .+|+..++..|..++.+.|++.|.+|+.+++
T Consensus 99 i~-~~~v~~ll~~A~~l~i~~l~~~c~~~L~~~l 131 (256)
T 3hve_A 99 LN-EDTIQDVVQAADLLLLTDLKTLCCEFLEGCI 131 (256)
T ss_dssp CC--CCHHHHHHHHHHHTCHHHHHHHHHHHHHTC
T ss_pred cc-HhHHHHHHHHHHHHChHHHHHHHHHHHHhhC
Confidence 45 8999999999999999999999999998765
No 334
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=28.11 E-value=43 Score=27.11 Aligned_cols=16 Identities=31% Similarity=0.349 Sum_probs=8.8
Q ss_pred hcCCHHHHHHHHHHHH
Q 002379 856 DDQKEVEAVEELSKAI 871 (929)
Q Consensus 856 ~~g~~~eA~~~l~kal 871 (929)
+.|+|++|+..|..++
T Consensus 23 ~~g~y~eAl~lY~~ai 38 (83)
T 2v6y_A 23 KEGKVEDAITYYKKAI 38 (83)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHH
Confidence 3556666555555544
No 335
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=27.39 E-value=2.1e+02 Score=30.53 Aligned_cols=44 Identities=14% Similarity=0.180 Sum_probs=32.6
Q ss_pred HHHHHHHHHHhc-----CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHh
Q 002379 499 EKIVDLNYASEL-----DPTLSFPYKYRAVAKMEEGQIRAAISEIDRII 542 (929)
Q Consensus 499 ~Ai~~~~kal~l-----~P~~~~a~~~~a~~~~~~g~~~~A~~~~~~al 542 (929)
.++..|.+|+.. .-....+|.++|-.+++.+++.+|+..+..+-
T Consensus 297 ~~~~L~~~AI~sa~~~Y~n~HvYPYtYlgGy~yR~~~~reAl~~WA~Aa 345 (550)
T 3u84_A 297 DPLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTA 345 (550)
T ss_dssp CHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccCCccceeecchhhhhcchHHHHHHHHHHHH
Confidence 455666666543 34567888888999999999999988887764
No 336
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A
Probab=25.65 E-value=38 Score=34.59 Aligned_cols=33 Identities=15% Similarity=0.110 Sum_probs=30.3
Q ss_pred cCChhhHHHHHHHHHHhChHHHHHHHHHHHHhch
Q 002379 318 VGDIEDALILIDYGLEERATLLVASCLQVLLREL 351 (929)
Q Consensus 318 ~~~~~n~~~~~~~a~~~~~~~L~~~c~~~i~~~~ 351 (929)
++ .+|+..++..|..++.+.|+..|.+|+.+++
T Consensus 107 i~-~~~v~~ll~~A~~l~i~~L~~~c~~~L~~~l 139 (279)
T 3i3n_A 107 VS-TGSVHEVLELADRFLLIRLKEFCGEFLKKKL 139 (279)
T ss_dssp EE-TTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cC-HHHHHHHHHHHHHHCcHHHHHHHHHHHHHcC
Confidence 45 7999999999999999999999999998864
No 337
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=24.59 E-value=1.1e+02 Score=24.73 Aligned_cols=26 Identities=15% Similarity=0.102 Sum_probs=16.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHc
Q 002379 751 LNNLGSIYVECGKLDQAENCYINALD 776 (929)
Q Consensus 751 ~~~lg~~~~~~g~~~eA~~~~~~al~ 776 (929)
+...|.-.-..|++++|+.+|..+++
T Consensus 22 lv~~Ave~D~~g~y~eAl~lY~~aie 47 (83)
T 2w2u_A 22 YAINAVKADKEGNAEEAITNYKKAIE 47 (83)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 45555556667777777777766543
No 338
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=23.41 E-value=90 Score=25.63 Aligned_cols=27 Identities=30% Similarity=0.146 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002379 845 YPYRYRAAVLMDDQKEVEAVEELSKAI 871 (929)
Q Consensus 845 ~~~~~la~~~~~~g~~~eA~~~l~kal 871 (929)
..+..++..+...|+|++||+..+++.
T Consensus 16 H~~~RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 16 HQQSRRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHhhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 345567888899999999988877765
No 339
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=22.53 E-value=2.6e+02 Score=25.72 Aligned_cols=58 Identities=9% Similarity=-0.112 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCc--hHHHHHHHHH--------HHcCCHHHHHHHHHHHhc
Q 002379 848 RYRAAVLMDDQKEVEAVEELSKAIAFKPDL--QMLHLRAAFY--------ESIGDLTSAIRDSQAALC 905 (929)
Q Consensus 848 ~~la~~~~~~g~~~eA~~~l~kal~~~p~~--~~~~~la~~~--------~~~g~~~~A~~~~~~al~ 905 (929)
+..|..++..|+|=+|=+.++.+....+.. ..-++.|.+. .+.||...|...+++++.
T Consensus 36 ~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 36 VVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
No 340
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=22.19 E-value=2.3e+02 Score=23.03 Aligned_cols=33 Identities=27% Similarity=0.438 Sum_probs=27.5
Q ss_pred HHHHHHHHhhHHHHhcccHHHHHHHHHHHHhcC
Q 002379 417 QRMLALHQLGCVMFEREEYKDACYYFEAAADAG 449 (929)
Q Consensus 417 ~~a~~~~~lG~~~~~~g~y~~A~~~f~~al~~~ 449 (929)
.+++.+..-|.-+++.++|.+|...|+++....
T Consensus 51 ~~~r~~i~eak~~y~~~ny~ea~~l~~k~~n~t 83 (106)
T 2vkj_A 51 KKARSLIAEGKDLFETANYGEALVFFEKALNLS 83 (106)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHhcchhHHHHHHHHHHccc
Confidence 455666778888999999999999999998663
No 341
>2cmy_B Beta trypsin, veronica hederifolia trypsin inhibitor; acyl-enzyme intermediate, serine protease inhibitor, zymogen protease, digestion; 2.25A {Veronica hederifolia} SCOP: g.2.4.1
Probab=21.97 E-value=26 Score=21.61 Aligned_cols=22 Identities=18% Similarity=0.341 Sum_probs=16.8
Q ss_pred HHHHHHHHhChHHHHHHHHHHH
Q 002379 326 ILIDYGLEERATLLVASCLQVL 347 (929)
Q Consensus 326 ~~~~~a~~~~~~~L~~~c~~~i 347 (929)
.++-+|..|+.++|.+.|++-.
T Consensus 8 kvmcyaqrhsspellrrcldnc 29 (34)
T 2cmy_B 8 KVMCYAQRHSSPELLRRCLDNC 29 (34)
T ss_dssp HHHHHHBC--CCHHHHHHHHHC
T ss_pred hHHHHHhhcCCHHHHHHHHHhh
Confidence 5678999999999999998743
No 342
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens}
Probab=21.83 E-value=6.9 Score=34.60 Aligned_cols=30 Identities=17% Similarity=0.059 Sum_probs=26.7
Q ss_pred cCChhhHHHHHHHHHHhChHHHHHHHHHHHH
Q 002379 318 VGDIEDALILIDYGLEERATLLVASCLQVLL 348 (929)
Q Consensus 318 ~~~~~n~~~~~~~a~~~~~~~L~~~c~~~i~ 348 (929)
++ .+|+..++..|..++.+.|++.|.+|+.
T Consensus 94 i~-~~~v~~ll~~A~~~~~~~L~~~C~~~l~ 123 (124)
T 2ihc_A 94 LS-KENVDEVCKCVEFLSVHNIEESCFQFLK 123 (124)
T ss_dssp EE-TTTHHHHHHHHHHHTBSSCCGGGGGTC-
T ss_pred cC-HHHHHHHHHHHHHHCCHHHHHHHHHHHh
Confidence 55 8999999999999999999999998763
No 343
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=21.53 E-value=1.1e+02 Score=25.31 Aligned_cols=31 Identities=13% Similarity=0.217 Sum_probs=23.1
Q ss_pred HHHHHHHhhHHHHhcccHHHHHHHHHHHHhc
Q 002379 418 RMLALHQLGCVMFEREEYKDACYYFEAAADA 448 (929)
Q Consensus 418 ~a~~~~~lG~~~~~~g~y~~A~~~f~~al~~ 448 (929)
.+..+...|...-..|+|++|+.+|..+++.
T Consensus 14 ~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie~ 44 (93)
T 1wfd_A 14 AAVAVLKRAVELDAESRYQQALVCYQEGIDM 44 (93)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4445556666777788999998888888775
No 344
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=21.41 E-value=1.2e+02 Score=24.71 Aligned_cols=30 Identities=10% Similarity=0.151 Sum_probs=21.4
Q ss_pred HHHHHHhhHHHHhcccHHHHHHHHHHHHhc
Q 002379 419 MLALHQLGCVMFEREEYKDACYYFEAAADA 448 (929)
Q Consensus 419 a~~~~~lG~~~~~~g~y~~A~~~f~~al~~ 448 (929)
+..+...|...-..|+|++|+.+|..+++.
T Consensus 16 A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~ 45 (86)
T 4a5x_A 16 AATVLKRAVELDSESRYPQALVCYQEGIDL 45 (86)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 334445555567778999999999888875
No 345
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=21.06 E-value=1.7e+02 Score=28.14 Aligned_cols=37 Identities=24% Similarity=0.192 Sum_probs=32.5
Q ss_pred HHHHHHHHhhHHHHhcccHHHHHHHHHHHHhcCcccc
Q 002379 417 QRMLALHQLGCVMFEREEYKDACYYFEAAADAGHIYS 453 (929)
Q Consensus 417 ~~a~~~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~~ 453 (929)
+...-+|.+|..++.+++|.+|...|..|+...|...
T Consensus 12 q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~ 48 (203)
T 3t5x_A 12 QRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSS 48 (203)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhH
Confidence 5566788999999999999999999999999977644
No 346
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=20.77 E-value=1.2e+02 Score=24.44 Aligned_cols=31 Identities=16% Similarity=0.149 Sum_probs=23.2
Q ss_pred HHHHHHHhhHHHHhcccHHHHHHHHHHHHhc
Q 002379 418 RMLALHQLGCVMFEREEYKDACYYFEAAADA 448 (929)
Q Consensus 418 ~a~~~~~lG~~~~~~g~y~~A~~~f~~al~~ 448 (929)
++..+...|.-.=..|+|++|+.+|..+++.
T Consensus 12 ~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie~ 42 (85)
T 2v6x_A 12 KGIELVQKAIDLDTATQYEEAYTAYYNGLDY 42 (85)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4445555666667779999999999988874
Done!