Query 002380
Match_columns 929
No_of_seqs 236 out of 399
Neff 5.4
Searched_HMMs 46136
Date Thu Mar 28 22:44:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002380.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002380hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2162 Nonsense-mediated mRNA 100.0 4.6E-40 1E-44 396.9 21.7 713 2-798 46-861 (862)
2 PF10373 EST1_DNA_bind: Est1 D 100.0 6.4E-39 1.4E-43 342.4 18.4 271 157-491 1-277 (278)
3 PF10374 EST1: Telomerase acti 99.9 2.2E-22 4.8E-27 194.5 7.3 118 17-146 1-129 (131)
4 KOG2162 Nonsense-mediated mRNA 95.0 0.16 3.4E-06 64.1 12.0 193 14-220 70-275 (862)
5 PF13414 TPR_11: TPR repeat; P 94.2 0.044 9.5E-07 46.6 3.3 49 152-200 17-66 (69)
6 PRK15359 type III secretion sy 92.4 0.29 6.2E-06 48.6 6.3 64 154-217 74-137 (144)
7 PF13424 TPR_12: Tetratricopep 88.6 0.21 4.6E-06 43.5 1.3 62 128-199 5-73 (78)
8 PF13431 TPR_17: Tetratricopep 86.7 0.33 7.1E-06 36.8 1.2 32 160-191 1-32 (34)
9 PRK15359 type III secretion sy 85.9 1.2 2.7E-05 44.1 5.1 68 152-219 38-105 (144)
10 KOG4626 O-linked N-acetylgluco 85.5 1.1 2.4E-05 54.1 5.1 64 155-218 337-400 (966)
11 CHL00033 ycf3 photosystem I as 84.6 2.9 6.4E-05 42.0 7.2 81 130-220 37-120 (168)
12 cd00189 TPR Tetratricopeptide 83.6 3.4 7.4E-05 34.0 6.2 66 153-218 15-80 (100)
13 KOG4626 O-linked N-acetylgluco 82.1 1.8 3.9E-05 52.4 5.1 67 154-220 370-436 (966)
14 PF13371 TPR_9: Tetratricopept 80.5 3.1 6.7E-05 35.5 4.8 53 152-205 9-61 (73)
15 PF13432 TPR_16: Tetratricopep 80.4 1.5 3.3E-05 36.7 2.8 48 152-199 11-58 (65)
16 PLN03088 SGT1, suppressor of 78.9 4.2 9.1E-05 46.6 6.6 67 153-219 51-117 (356)
17 TIGR00990 3a0801s09 mitochondr 78.7 4.2 9.2E-05 49.5 7.0 66 152-217 413-478 (615)
18 cd00189 TPR Tetratricopeptide 77.7 4 8.6E-05 33.6 4.6 47 153-199 49-95 (100)
19 PF07719 TPR_2: Tetratricopept 76.9 3.6 7.7E-05 29.8 3.5 31 131-171 4-34 (34)
20 CHL00033 ycf3 photosystem I as 75.6 3.9 8.5E-05 41.1 4.7 47 130-186 74-120 (168)
21 TIGR02521 type_IV_pilW type IV 73.5 9.3 0.0002 38.2 6.8 65 153-217 46-110 (234)
22 PF13176 TPR_7: Tetratricopept 73.5 3.4 7.4E-05 31.4 2.7 30 130-169 1-30 (36)
23 PF00515 TPR_1: Tetratricopept 73.0 3.9 8.5E-05 30.0 2.9 31 130-170 3-33 (34)
24 PLN03088 SGT1, suppressor of 72.5 5.8 0.00013 45.4 5.6 67 152-218 16-82 (356)
25 TIGR02552 LcrH_SycD type III s 72.3 7 0.00015 37.1 5.3 46 154-199 67-112 (135)
26 KOG1125 TPR repeat-containing 72.2 3.5 7.7E-05 49.5 3.8 64 151-214 443-506 (579)
27 KOG1173 Anaphase-promoting com 68.8 11 0.00023 45.6 6.7 83 128-220 455-537 (611)
28 PRK11189 lipoprotein NlpI; Pro 67.6 9.5 0.00021 42.3 5.8 66 153-218 79-144 (296)
29 TIGR00990 3a0801s09 mitochondr 66.5 13 0.00029 45.3 7.3 65 153-217 380-444 (615)
30 PRK02603 photosystem I assembl 65.5 14 0.00031 37.3 6.2 67 152-218 49-118 (172)
31 TIGR02552 LcrH_SycD type III s 65.2 10 0.00022 36.0 4.7 67 153-219 32-98 (135)
32 PRK10370 formate-dependent nit 64.7 22 0.00047 37.4 7.5 66 153-218 88-156 (198)
33 COG3063 PilF Tfp pilus assembl 61.2 1.1E+02 0.0023 33.8 11.8 159 2-218 55-216 (250)
34 KOG1126 DNA-binding cell divis 60.7 5.3 0.00011 48.8 2.2 50 151-200 468-517 (638)
35 TIGR02521 type_IV_pilW type IV 60.6 30 0.00065 34.5 7.4 49 153-201 150-198 (234)
36 PRK12370 invasion protein regu 59.5 22 0.00048 43.1 7.3 67 152-218 318-384 (553)
37 PRK12370 invasion protein regu 59.1 16 0.00034 44.3 6.0 51 152-202 352-402 (553)
38 PF13181 TPR_8: Tetratricopept 54.7 13 0.00028 27.0 2.7 31 130-170 3-33 (34)
39 COG3063 PilF Tfp pilus assembl 54.7 26 0.00057 38.3 6.0 64 155-218 86-151 (250)
40 PF14559 TPR_19: Tetratricopep 54.0 12 0.00027 31.2 2.9 44 152-195 5-48 (68)
41 PLN03098 LPA1 LOW PSII ACCUMUL 53.7 14 0.00031 43.8 4.2 49 153-201 90-141 (453)
42 PF00244 14-3-3: 14-3-3 protei 51.9 49 0.0011 36.0 7.7 135 4-170 23-158 (236)
43 PRK15363 pathogenicity island 51.5 21 0.00045 36.8 4.4 44 152-195 83-126 (157)
44 PRK11189 lipoprotein NlpI; Pro 51.5 19 0.00042 39.9 4.7 53 152-205 112-164 (296)
45 smart00101 14_3_3 14-3-3 homol 50.9 1.6E+02 0.0034 32.5 11.4 49 125-176 118-166 (244)
46 PF13428 TPR_14: Tetratricopep 49.8 11 0.00024 29.7 1.8 29 153-181 16-44 (44)
47 PRK11447 cellulose synthase su 49.3 35 0.00076 45.2 7.3 66 152-217 365-430 (1157)
48 KOG1155 Anaphase-promoting com 43.6 39 0.00085 40.3 5.6 67 152-218 378-444 (559)
49 PRK15174 Vi polysaccharide exp 40.6 64 0.0014 40.2 7.2 66 153-218 91-156 (656)
50 PRK02603 photosystem I assembl 40.3 38 0.00082 34.2 4.4 35 153-187 87-121 (172)
51 smart00028 TPR Tetratricopepti 39.7 45 0.00098 21.7 3.5 18 153-170 16-33 (34)
52 TIGR02795 tol_pal_ybgF tol-pal 39.4 71 0.0015 28.9 5.7 67 152-218 16-88 (119)
53 PRK15363 pathogenicity island 38.7 40 0.00088 34.7 4.3 64 153-216 50-113 (157)
54 PRK10370 formate-dependent nit 37.8 1E+02 0.0022 32.4 7.2 57 154-210 126-182 (198)
55 KOG1129 TPR repeat-containing 37.6 30 0.00065 39.7 3.3 45 151-195 408-452 (478)
56 COG5010 TadD Flp pilus assembl 35.4 91 0.002 34.6 6.5 68 153-220 149-216 (257)
57 PF12196 hNIFK_binding: FHA Ki 34.1 15 0.00033 29.4 0.3 16 589-604 25-40 (41)
58 PRK15174 Vi polysaccharide exp 33.8 85 0.0018 39.1 6.9 63 156-218 268-330 (656)
59 TIGR02917 PEP_TPR_lipo putativ 32.7 99 0.0022 37.8 7.1 67 152-218 615-681 (899)
60 KOG2076 RNA polymerase III tra 32.2 75 0.0016 40.6 5.8 66 153-218 188-253 (895)
61 PRK10993 outer membrane protea 31.9 28 0.00061 39.6 2.0 30 814-843 100-129 (314)
62 COG5010 TadD Flp pilus assembl 31.2 92 0.002 34.6 5.7 64 152-215 114-177 (257)
63 KOG3824 Huntingtin interacting 30.7 51 0.0011 37.6 3.7 59 154-212 132-190 (472)
64 TIGR02795 tol_pal_ybgF tol-pal 30.4 86 0.0019 28.4 4.7 49 153-201 54-105 (119)
65 PRK09782 bacteriophage N4 rece 30.4 92 0.002 40.9 6.5 66 153-218 624-689 (987)
66 KOG1173 Anaphase-promoting com 29.7 77 0.0017 38.7 5.2 71 151-221 393-470 (611)
67 PRK10153 DNA-binding transcrip 28.7 72 0.0016 38.8 4.9 48 152-200 434-481 (517)
68 KOG2003 TPR repeat-containing 27.7 42 0.00091 39.8 2.5 77 149-226 248-335 (840)
69 PRK11788 tetratricopeptide rep 27.6 93 0.002 34.9 5.3 49 152-200 194-242 (389)
70 PF08238 Sel1: Sel1 repeat; I 27.5 72 0.0016 23.7 3.1 34 131-167 4-37 (39)
71 PRK09782 bacteriophage N4 rece 26.9 99 0.0021 40.6 5.9 66 152-218 590-655 (987)
72 PRK11447 cellulose synthase su 26.8 1.4E+02 0.0031 39.7 7.5 65 152-216 617-681 (1157)
73 PF10516 SHNi-TPR: SHNi-TPR; 26.8 69 0.0015 25.3 2.8 29 129-167 2-30 (38)
74 PLN02789 farnesyltranstransfer 26.4 1.1E+02 0.0024 34.9 5.5 65 154-218 158-229 (320)
75 PRK15331 chaperone protein Sic 26.3 81 0.0017 32.9 4.0 48 152-199 85-132 (165)
76 KOG1941 Acetylcholine receptor 26.1 51 0.0011 38.4 2.8 47 127-183 245-291 (518)
77 PRK12580 outer membrane protea 26.1 41 0.00089 38.1 2.0 33 813-845 99-131 (312)
78 PF13174 TPR_6: Tetratricopept 25.7 97 0.0021 21.8 3.4 19 153-171 15-33 (33)
79 PF02259 FAT: FAT domain; Int 25.4 81 0.0018 34.9 4.3 75 126-204 250-341 (352)
80 KOG1128 Uncharacterized conser 25.3 1.1E+02 0.0025 38.3 5.6 96 127-222 456-569 (777)
81 TIGR02917 PEP_TPR_lipo putativ 25.1 1.4E+02 0.0031 36.5 6.6 67 152-218 750-816 (899)
82 PRK10747 putative protoheme IX 24.5 86 0.0019 36.3 4.4 47 152-199 342-388 (398)
83 KOG1840 Kinesin light chain [C 22.8 1.1E+02 0.0024 37.3 4.9 61 133-200 243-311 (508)
84 KOG0307 Vesicle coat complex C 21.1 1.7E+03 0.037 29.8 14.7 21 508-528 634-654 (1049)
85 KOG0553 TPR repeat-containing 21.0 1.4E+02 0.003 34.0 4.9 63 153-215 130-192 (304)
No 1
>KOG2162 consensus Nonsense-mediated mRNA decay protein [RNA processing and modification]
Probab=100.00 E-value=4.6e-40 Score=396.91 Aligned_cols=713 Identities=24% Similarity=0.254 Sum_probs=465.4
Q ss_pred HHHHHHHHhcChhhhhhchHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCcccccCCCchhhHHHHHHHHHHHHHHHHHH
Q 002380 2 RENYEAIILEDHAFSEQHNVEYALWQLHYRRIEELRAHYSAAVSSAGSNTSQATKVPLRSDRVTKIRQQFKTFLSEATGF 81 (929)
Q Consensus 2 Re~ye~iIl~D~~fa~~~~VE~~LWk~hYk~Ie~fRk~ik~~~~~~~s~~~Q~~k~~~~~~~~rkl~~~f~~fLk~a~~F 81 (929)
++.||.+|+....+.+.+.+|-.+|+.||+.|++||+..+. .-..++...|+.++..|++|
T Consensus 46 ~~~~e~a~~~~~~~~~~~~~ei~~~~s~g~~i~~f~k~~~~-------------------~~~~~~~~~~r~~~s~a~~~ 106 (862)
T KOG2162|consen 46 TEKAENAILVATTASQLRPVEILLWQSHGKKIEEFRKGQKM-------------------ANEIKLEGILRTLLSKAADF 106 (862)
T ss_pred HhhHHHHHHHhhhHhhcceeeEechhhhhccHHHHHHHHHH-------------------HHHHHhHHHHHHHHHHhhhH
Confidence 57899999999999999999999999999999999966221 12346678899999999999
Q ss_pred HHHHHHHHHHHhCCCCCCCCCccccccccccCCCCchhhhhhHHHHHHHHHHhcchhhhhhhhcCCCCccccHHHHHHHH
Q 002380 82 YHELILKIRAKYGLPLGNFSEDSENRIIMDKDGKKSSEVKKGLVSCHRCLIYLGDLARYKGLYGEGDSKSREYAAASSYY 161 (929)
Q Consensus 82 Y~~LI~~L~~~y~l~l~~~~~~~~~~~v~~kd~~~s~~~k~al~schrCLi~LGDLaRYr~~~~~~~~~~~~~~~A~~yY 161 (929)
|+..+.+++..+ ++++..|||||+|||||+||+.++...+.+. +|..+..||
T Consensus 107 y~~~~~~~r~~~---------------------------~~a~~~~h~~~~~lgdl~ry~~~~~~~~~~~-~~~~~~~~y 158 (862)
T KOG2162|consen 107 YQNDLKKLRDKS---------------------------QKARRLCHRCLYYLGDLSRYQTQLAIADTDL-EWESGSPYY 158 (862)
T ss_pred HhhhHHHHHHHH---------------------------HHHHHHHhhheeecchHHHHHHHHhhccccc-chhhcChHH
Confidence 999999999877 4678899999999999999999998888777 999999999
Q ss_pred HHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhcCCCCChhHHHHHHHHHHHHHhhhhhcccccccccccccccc
Q 002380 162 LQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAVDSPFSTARDNLIVAFEKNRQSYSQMSGDVKSSTAKEAGRL 241 (929)
Q Consensus 162 ~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~~Pf~~A~~NL~~lf~k~r~~~~ql~~~~k~~~~~~p~r~ 241 (929)
..|..++|..|+|+||||+|+.++++.+.+.|||+|||++.+||+.|.+||..+|+|+++.+.++... .+.+ +
T Consensus 159 ~ea~~~~p~~g~p~~ql~~l~~~~~~~~~~~y~~~~~l~~~~~f~~a~~Nl~~~f~k~~~~~l~~~s~---~~~~---~- 231 (862)
T KOG2162|consen 159 LEAASLYPQSGMPHNQLGILANYKNDEFLSTYHYLRSLLVEISFKGASENLKKLFDKNRLSSLKLPST---DEAY---N- 231 (862)
T ss_pred HHHHHhccccCChHHHHHHHhhhhhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHhhcccccccc---Ccch---h-
Confidence 99999999999999999999999999999999999999999999999999999999999986544321 1100 0
Q ss_pred cCCCCCcccccccccccccchhhhhhcccchHHHHH-HHHHHHHHHhccccccCChhHHHHHHHHHHHHHHHHhc-CCCc
Q 002380 242 TGKGRGKVEVKLASKDADMETSAVKESVSGVQEKLK-AFCTRFVRLNGILFTRTSLETFAEVLALVSSGLCELLS-SGPE 319 (929)
Q Consensus 242 ~~~~~g~~e~rl~~~d~~~e~~~~k~~~~s~~E~~k-~f~~~FV~lhGiLFtk~~lEtF~~~l~~~l~~L~~lL~-~~~~ 319 (929)
. ++-..+..++.......... ...+....+ .+-..|+.+.++.| +...+.+.+..+....+.+.++. ....
T Consensus 232 ~-----~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~l~~l~~-~~n~~~~~d~~a~~~~~~r~l~~~~~~~ 304 (862)
T KOG2162|consen 232 I-----EGAVFFYRKDLDKAAFCLVA-GLSCSSPCEVVGKRFFALLSDLQF-RANHSLATDIMAAYVSEQRKLLDVLLEI 304 (862)
T ss_pred h-----cceEEEecccchhhhhhHhh-hhhccchHHHHHHHHHHHHHhhhc-cccchhHHHHHHHHHHHhhhhhhhhhhh
Confidence 0 00011111111111110000 011111112 22223666666666 99999999999998888888876 3222
Q ss_pred cccccC-CCcccchHHHHHHHHHHHHhhccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCc
Q 002380 320 EELNFG-SDANENALFIVRLVSILIFTVHNLKKENENQTYAEIVQRAVLLQNAFTAVFELMGHIIERCMQLSDPSSSYLL 398 (929)
Q Consensus 320 ~el~~g-~~~~~~a~~llqlvaI~Ifavhnl~k~s~~qs~aei~qrs~ll~~Al~~Af~~~s~ll~r~~ql~Dpn~~~lL 398 (929)
.++... .+....+....++|...++.+|+. ..+...++++.++-......++..|...+....+|.+..+....+.+
T Consensus 305 ~ql~~~~i~~~~~s~~~~riv~~~~~~f~~~--h~k~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~q~~~~~s~~~~ 382 (862)
T KOG2162|consen 305 IQLARHEITERKWSDTEYRIVTFFLVSFSNI--HSKNVLYAEIEAKVEDTFLKLSPIFYATGSSEEKSKQQRDEYSPPFL 382 (862)
T ss_pred HHHHhccccccccccceEeeehhhHHHhhhh--hhHHHHHHHHHHHhcccccccccchhhcccchHHHHhhcCCcccccc
Confidence 222221 122223345667777777777776 33444455544332111123333455556666777777887788999
Q ss_pred chhHHHHHHhhcCccccCCCChhhhhhhhccccHHHHHHHHHHhhhcCC-CCCCCcccchhhcccCCccccccccccCCc
Q 002380 399 PGVLVFVEWLACYPDIASGSDADERQATVRSNFWNQCISFLNKILSLGP-MSVADDEDLTCFFNMSRYDEAETENRLALW 477 (929)
Q Consensus 399 PAVlVfLdWL~~~Pd~~~~~e~de~q~~~~~~pW~~La~lLNtLl~~~~-~~id~~~de~~f~~mp~~~e~e~~~~~pLP 477 (929)
+++.++.+||.+.++......-+..+...+..+|..+..+.|.+...+. ..++..++.+|++ ......+|
T Consensus 383 ~~~~~~s~~ls~~s~~~~~~~p~~~~~~~s~~~~~~l~~~~~~l~~~g~~~~~~s~~~~tc~~---------s~n~~a~~ 453 (862)
T KOG2162|consen 383 KATDRSSDKLSTLSDDFAYSAPVKRDESYSREFMPRLSSRFRKLLQLGYSCDDDSLYTSTCKS---------SENRLALW 453 (862)
T ss_pred cccchhhhhhccccHHHhhcCccccccccchhhhHHHHHHHHHHHHhcCCcchhccccccccc---------hhhhhhhH
Confidence 9999999999999988766432222222567899999999999998763 2223334456653 23578999
Q ss_pred hhhhhccCcCCCCCCCCCCCCCCCCCCCCchhhhhhHHHH-HHHHHHHHhccccCCCccEEEcCCC-cEEEccCCC-ccc
Q 002380 478 EDIELRGFLPLLPAQTILDFSRKISFGGDGNKERKDRVKR-IFAAGKALANVIMVDQKPVCFDSKV-KKFVIGTEP-LDD 554 (929)
Q Consensus 478 EDf~LRGFlPL~~a~~~l~F~~~~~~~~De~s~~~~R~~R-IL~lG~~LA~~~~~~~~wI~fD~~~-rkF~v~~e~-~~~ 554 (929)
||.++.++++..+.+..+.++.........+....+++.+ +-.+++.+-......+.|+.+|... +.|.+..+. +..
T Consensus 454 ~dl~~~~~~~~~~~~~~~~~s~~~~~~~~f~~~~~~~i~~~~n~~~~e~~r~~~~~q~~~~~d~~~~~~~l~~~e~as~~ 533 (862)
T KOG2162|consen 454 EDLELYDLLLSVLEHNLPATSRIESRLEEFSEGKEVSIMSFKNFALKEFFRRSKTLQELLEEDTRIRHCFLLHIEDASGE 533 (862)
T ss_pred HHhhhhccccccCccccchhccCchhhhhCCcccchhhccccccccccccccchhhhhhhhccccccccccccccccchh
Confidence 9999999999998887777765443222224456677777 4455555555556788999998887 778887887 444
Q ss_pred cccccCCcccchhHHhhhh-hhhhhccccccCCC-cC-CCCCCcceeEEeccCcc--ccccccccccccccCCcccccc-
Q 002380 555 ITFTSSDVSKTNDLILENQ-AEKAMNLGVVQAPQ-LY-MDGEEEDEVIVFKPAVT--EKRADVVGSTWMYYDGFTPGHN- 628 (929)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~-~~~~~~~evi~fkp~~~--~~~~~~~~~~~~~~~~~~~~~~- 628 (929)
+.+.++..++..... +.+ .....+..|++... .+ -..+.+.++|++||++. ++.......-..+++..+.-..
T Consensus 534 l~~~~~~~~~~~se~-~~~~~~i~~~~~i~~l~~e~~~~~~k~~~~~i~~~pl~~i~s~~~~s~~l~~~~n~~~~~~~~f 612 (862)
T KOG2162|consen 534 LSLLGDPAEETRSEL-ESLEIKINKCLEIMVLDLERLLLHEKIRKDEIEINPLVLIPSTNSFSSDLLKRPNELLESTRLF 612 (862)
T ss_pred hhccCCchhhhhhcc-cchhhhccccchhHHHHHHhhhhhcccccceEEeccceecCcchhhHHHHhhccchhhhhhhhh
Confidence 545443221211111 111 11222444555544 22 23345668899999998 7655444333333311100000
Q ss_pred -----c--------cccc--ccccc-cccccc---------------------------ccccccccc---cCCCCCCcc
Q 002380 629 -----A--------AVGD--LQFYA-GSVSTS---------------------------QDNLRQQST---YDSSLPLPV 662 (929)
Q Consensus 629 -----~--------~~~~--~~~~~-~~~~~~---------------------------~~~~~~~~~---~~~~~~~~~ 662 (929)
+ ..++ +.+.. |+.... +...+.... +..+.-..+
T Consensus 613 ~~l~~~dll~el~~~~~~~~l~~~~~~l~~~~p~~~~k~~~~v~~~~~~~e~~v~~~~~~~s~g~~L~~l~~~~e~~~~~ 692 (862)
T KOG2162|consen 613 LELTVSDLLRELLSLAKDVELDSAMAGLERTDPEHPIKASNTVRERKEAVEELVRRLLGQTSDGFRLCELKFSSEAKMGV 692 (862)
T ss_pred hccchHHHHHHHhhhhccccccccccccccCCccccchhhhhhhcccccHHHHHHHHhccccccchhhhccccccccccc
Confidence 0 0000 11111 111110 000000000 000000000
Q ss_pred cc-----------------------ccCCcccccccC----------------CCCCCchhhhhhhhhhcccCCcCCCCC
Q 002380 663 SV-----------------------GNILPQHLQSVQ----------------PHAPKQLMEEEVSLANSLKGLRLPENG 703 (929)
Q Consensus 663 ~~-----------------------~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 703 (929)
.. ..-.|.+.|..| ..-++|...+++......-++.-+.++
T Consensus 693 ~t~~~s~~e~~~~~~s~~r~~q~~~~~p~p~~~~~~~~~v~h~~~r~~k~ks~~~~~~~~~~~a~~~~a~~~~~~~~~s~ 772 (862)
T KOG2162|consen 693 ETQDTSQFELCKILSSTFRRIQEEPRSPEPSATQIPQDCVLHTEDRSLKRKSFTQNSPVRDLPALDTWASGVPFASYSSS 772 (862)
T ss_pred cccccCchHHHHhhhhhhHHHhcccCCCCCCcccCchhheecccccccccccccCCccCcchHHHhccccCCccccccCc
Confidence 00 001111111111 223556655555555555556668999
Q ss_pred cccchhhhcccCCCCCCCcccCcccccccCC-CCcccccCCCCcccccCcchhhhccchhh----hccCCCCCCCCCCCC
Q 002380 704 RVLKHEMLENIGPSLPAARTIPIQQSVNVNA-SGMHYSFSNGPEAVIPSKVDAIASLGVAA----VKASSAFPAGPRKSP 778 (929)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 778 (929)
++|. |..-++++.++.+.+. ++.|..- .++.+++.-..++..+..+|...++ +.+ |- +. .|+.+
T Consensus 773 ~~~~---~~~~~~~~~~a~~~~~-~~~~~~k~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~-~~-----ak~~q 841 (862)
T KOG2162|consen 773 KQTR---QGIEVLSLYKASSLQA-SSKNNLKCATTKGSFWLASQAETGEEEDRSNDA-VVADALAVQ-SL-----AKTEQ 841 (862)
T ss_pred ceeE---eeecccCcccccccch-hhhcchhhhcccCccccchhhhhCCcccccchh-hhcccceeh-hh-----hhccc
Confidence 9999 8999999999999999 7766665 7778888899999999999999999 555 43 33 49999
Q ss_pred CCCCCCCCCCCCCCCCCCCc
Q 002380 779 VSRPVRHLGPPPGFSPVPSK 798 (929)
Q Consensus 779 ~sr~~~~~gpppgf~~~~~k 798 (929)
..+-.+|+++||||+.+|-+
T Consensus 842 ~~~~~~~~~~~~~~~~~~~~ 861 (862)
T KOG2162|consen 842 LTADQQSFTQPPGGNSTPNR 861 (862)
T ss_pred cchhhhccCCCCCcccCCCC
Confidence 99999999999999999854
No 2
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=100.00 E-value=6.4e-39 Score=342.36 Aligned_cols=271 Identities=39% Similarity=0.581 Sum_probs=187.5
Q ss_pred HHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhcCCCCChhHHHHHHHHHHHHHhhhhhccccccccccc
Q 002380 157 ASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAVDSPFSTARDNLIVAFEKNRQSYSQMSGDVKSSTAK 236 (929)
Q Consensus 157 A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~~Pf~~A~~NL~~lf~k~r~~~~ql~~~~k~~~~~ 236 (929)
|++||.+|+.+.|++|+||||||+|+.++++.++|||||+|||+|++||++|++||..+|++..+.+......
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~~~~~~~~~~~~------- 73 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEKAQSHLSNKKSS------- 73 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH---------HT-------
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhcccchhccch-------
Confidence 7899999999999999999999999999999999999999999999999999999999999944332111000
Q ss_pred ccccccCCCCCcccccccccccccchhhhhhcccchHHHHHHHHHHHHHHhccccccCChhHHHHHHHHHHHHHHHHhcC
Q 002380 237 EAGRLTGKGRGKVEVKLASKDADMETSAVKESVSGVQEKLKAFCTRFVRLNGILFTRTSLETFAEVLALVSSGLCELLSS 316 (929)
Q Consensus 237 ~p~r~~~~~~g~~e~rl~~~d~~~e~~~~k~~~~s~~E~~k~f~~~FV~lhGiLFtk~~lEtF~~~l~~~l~~L~~lL~~ 316 (929)
+ ..+.. ......+..++|+..||++||++|+++++++|.++...++.+|+.++..
T Consensus 74 ---~----~~~~~------------------~~~~~~~~~~~~~~~Fl~l~~~l~~~~~~~~~~~~~~~~l~~l~~~l~~ 128 (278)
T PF10373_consen 74 ---E----SNNKS------------------SSKSRSELEERFISYFLRLHGILFTKIDLESFSELCNEFLSDLENLLSE 128 (278)
T ss_dssp ---T----S--------------------------SS--HHHHHHHHHHHHHHHHHT--GGGHHHHHHHHHHHHHHHHHT
T ss_pred ---h----hcccc------------------ccccccchHHHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHHHHHH
Confidence 0 00000 0001123457899999999999999999999999999999999999987
Q ss_pred CCccccccCCCcccchHHHHHHHHHHHHhhccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh------hcC
Q 002380 317 GPEEELNFGSDANENALFIVRLVSILIFTVHNLKKENENQTYAEIVQRAVLLQNAFTAVFELMGHIIERCM------QLS 390 (929)
Q Consensus 317 ~~~~el~~g~~~~~~a~~llqlvaI~Ifavhnl~k~s~~qs~aei~qrs~ll~~Al~~Af~~~s~ll~r~~------ql~ 390 (929)
. +...+...|+||++|+|+++|+...+. ....+++.+.+.++.+++.+++.+++.+. ...
T Consensus 129 ~---------~~~~~~~~ll~~~~i~i~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 194 (278)
T PF10373_consen 129 S---------PRSLNSDQLLKMVIINIFAVHLLRKSS-----SNSTQSSELLQHALAFLLALFSFLLDHINNVLQSSWSI 194 (278)
T ss_dssp -----------T-S-HHHHHHHHHHHHHHHHHHS-----------HHHHHHHHHHHHHHHHHHHHHHHHHH--------S
T ss_pred h---------hccCCHHHHHHHHHHHHHHHHHccccc-----cchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 1 113456789999999999999886611 12244566778899999999999999886 334
Q ss_pred CCCCCCCcchhHHHHHHhhcCccccCCCChhhhhhhhccccHHHHHHHHHHhhhcCCCCCCCcccchhhcccCCcccccc
Q 002380 391 DPSSSYLLPGVLVFVEWLACYPDIASGSDADERQATVRSNFWNQCISFLNKILSLGPMSVADDEDLTCFFNMSRYDEAET 470 (929)
Q Consensus 391 Dpn~~~lLPAVlVfLdWL~~~Pd~~~~~e~de~q~~~~~~pW~~La~lLNtLl~~~~~~id~~~de~~f~~mp~~~e~e~ 470 (929)
++....+||+|+|+++||.++++++.....++. ....+|+.++.++|.+...... .. .+...
T Consensus 195 ~~~~~~~Lp~lrv~l~Wl~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~l~~~~~~--~~-------------~~~~~ 256 (278)
T PF10373_consen 195 TPVLSRLLPALRVFLDWLKSNPDVLQYLHSDES---FCQSLWSLLADLLNSLNSLPPF--SS-------------EEDPP 256 (278)
T ss_dssp TTTSSSSHHHHHHHHHHHTT-GGGGG---HHHH---CTTTSHHHHHHHHHCC--------BC-------------GGGS-
T ss_pred ccccccchHHHHHHHHHHHHCHHHHhcccchhh---HHHHHHHHHHHHHHHhhcccCC--cc-------------cCCcc
Confidence 567789999999999999999999998644332 3456999999999988654211 00 11122
Q ss_pred ccccCCchhhhhccCcCCCCC
Q 002380 471 ENRLALWEDIELRGFLPLLPA 491 (929)
Q Consensus 471 ~~~~pLPEDf~LRGFlPL~~a 491 (929)
...++||||++||||.|+..+
T Consensus 257 ~~~~~l~ED~~l~gF~pl~~~ 277 (278)
T PF10373_consen 257 RRSYPLPEDVELRGFSPLNFA 277 (278)
T ss_dssp ---S--HHHHCTTT-GGGHHH
T ss_pred ccCccCHHHHHcCCCcCCcCC
Confidence 367999999999999998754
No 3
>PF10374 EST1: Telomerase activating protein Est1; InterPro: IPR019458 Est1 is directly involved in telomere replication. It associates with telomerase and, during its interaction with CDC13, telomerase activity is promoted [, ]. ; PDB: 1YA0_B.
Probab=99.86 E-value=2.2e-22 Score=194.55 Aligned_cols=118 Identities=34% Similarity=0.526 Sum_probs=77.5
Q ss_pred hhchHHHHHHH-HHHHHHHHHHHHHHHhhhccCCCCcccccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 002380 17 EQHNVEYALWQ-LHYRRIEELRAHYSAAVSSAGSNTSQATKVPLRSDRVTKIRQQFKTFLSEATGFYHELILKIRAKYGL 95 (929)
Q Consensus 17 ~~~~VE~~LWk-~hYk~Ie~fRk~ik~~~~~~~s~~~Q~~k~~~~~~~~rkl~~~f~~fLk~a~~FY~~LI~~L~~~y~l 95 (929)
++++||+.||+ +||++|++||+++++. +++.++++.++++..|.+||++|++||++||.+|+++|++
T Consensus 1 ~~~~ve~~LW~~~~y~ii~~fr~~~~~~------------~~~~~~~~~rk~~~~~~~fl~~~~~FY~~li~~l~~~y~l 68 (131)
T PF10374_consen 1 MGKKVEELLWKKVHYPIIKWFRKWIRRK------------KSKKKPVEFRKLKSKLRKFLKSAIGFYQSLIQRLQSKYDL 68 (131)
T ss_dssp -HCTHHHHHHHHHTHHHHHHHHH----H------------CT-TT-TTCCHHHHHHHHHHHHHHHHHHHHHHHHCHHTT-
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHhhhc------------ccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 36899999998 9999999999998741 2334578889999999999999999999999999999998
Q ss_pred CCCCCCCc------cccc--ccc--ccCCCCchhhhhhHHHHHHHHHHhcchhhhhhhhcC
Q 002380 96 PLGNFSED------SENR--IIM--DKDGKKSSEVKKGLVSCHRCLIYLGDLARYKGLYGE 146 (929)
Q Consensus 96 ~l~~~~~~------~~~~--~v~--~kd~~~s~~~k~al~schrCLi~LGDLaRYr~~~~~ 146 (929)
++...... .... ... .......+...+++.+|||||||||||+||++++++
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~hrcLi~LGDL~RY~~~~~~ 129 (131)
T PF10374_consen 69 SLLIPIDIFLSLLPLFTKSSSDSSSYIPDSSSELRSWALYSCHRCLIYLGDLARYREQYEK 129 (131)
T ss_dssp ----------------------------------SCHHHHHHHHHHHHHHHHHHHTT-HHH
T ss_pred CccchhhhhhhhcchhcccccccccccCCCCHHHHHHHHHHHHHHHHHhCcHHHHHHHHhc
Confidence 86433210 0000 000 001111234457899999999999999999998864
No 4
>KOG2162 consensus Nonsense-mediated mRNA decay protein [RNA processing and modification]
Probab=95.00 E-value=0.16 Score=64.11 Aligned_cols=193 Identities=13% Similarity=0.071 Sum_probs=126.9
Q ss_pred hhhhhchHHHHH-HHHHHHHHH---HHHHHHHHhhhccCCCCcccccCCCchhhHHHHHHHHHHHHHHHHH--HHHHHHH
Q 002380 14 AFSEQHNVEYAL-WQLHYRRIE---ELRAHYSAAVSSAGSNTSQATKVPLRSDRVTKIRQQFKTFLSEATG--FYHELIL 87 (929)
Q Consensus 14 ~fa~~~~VE~~L-Wk~hYk~Ie---~fRk~ik~~~~~~~s~~~Q~~k~~~~~~~~rkl~~~f~~fLk~a~~--FY~~LI~ 87 (929)
-....+++++.. |...+..|+ .||.....+ .......+++++...++++..+++ +|.+.|.
T Consensus 70 ~~s~g~~i~~f~k~~~~~~~~~~~~~~r~~~s~a-------------~~~y~~~~~~~r~~~~~a~~~~h~~~~~lgdl~ 136 (862)
T KOG2162|consen 70 WQSHGKKIEEFRKGQKMANEIKLEGILRTLLSKA-------------ADFYQNDLKKLRDKSQKARRLCHRCLYYLGDLS 136 (862)
T ss_pred hhhhhccHHHHHHHHHHHHHHHhHHHHHHHHHHh-------------hhHHhhhHHHHHHHHHHHHHHHhhheeecchHH
Confidence 346677888877 433444333 366655433 112234566777777555555554 5677788
Q ss_pred HHHHHhCCCCCCCCCccccc-----cccccCCCCchhhhhhHHHHHHHHHHhcchhhhhhhhcCCCC--ccccHHHHHHH
Q 002380 88 KIRAKYGLPLGNFSEDSENR-----IIMDKDGKKSSEVKKGLVSCHRCLIYLGDLARYKGLYGEGDS--KSREYAAASSY 160 (929)
Q Consensus 88 ~L~~~y~l~l~~~~~~~~~~-----~v~~kd~~~s~~~k~al~schrCLi~LGDLaRYr~~~~~~~~--~~~~~~~A~~y 160 (929)
+.+..|.+..... ++.... ...--+....+..+.+...-|+|+.+|+=+++||.+..+... ...|+.++..+
T Consensus 137 ry~~~~~~~~~~~-~~~~~~~~y~ea~~~~p~~g~p~~ql~~l~~~~~~~~~~~y~~~~~l~~~~~f~~a~~Nl~~~f~k 215 (862)
T KOG2162|consen 137 RYQTQLAIADTDL-EWESGSPYYLEAASLYPQSGMPHNQLGILANYKNDEFLSTYHYLRSLLVEISFKGASENLKKLFDK 215 (862)
T ss_pred HHHHHHhhccccc-chhhcChHHHHHHHhccccCChHHHHHHHhhhhhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHH
Confidence 8888887654332 221100 000001111122344555667777777766666665544322 23468899999
Q ss_pred HHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhcCCCCChhHHHHHHHHHHHHH
Q 002380 161 YLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAVDSPFSTARDNLIVAFEKNR 220 (929)
Q Consensus 161 Y~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~~Pf~~A~~NL~~lf~k~r 220 (929)
|.++-..+|..|.+|||.+++-.+..+...+.+...|.+.+..|...+..++..+...+.
T Consensus 216 ~~~~~l~~~s~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~l~ 275 (862)
T KOG2162|consen 216 NRLSSLKLPSTDEAYNIEGAVFFYRKDLDKAAFCLVAGLSCSSPCEVVGKRFFALLSDLQ 275 (862)
T ss_pred HhhccccccccCcchhhcceEEEecccchhhhhhHhhhhhccchHHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999999999999999877766554
No 5
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=94.23 E-value=0.044 Score=46.57 Aligned_cols=49 Identities=20% Similarity=0.253 Sum_probs=44.3
Q ss_pred ccHHHHHHHHHHHHhcCCCCCCchhhhHHHHhccC-CchhhHHHHHhhhc
Q 002380 152 REYAAASSYYLQAASLWPSSGNPHHQLAILASYSS-DELVAVYRYFRSLA 200 (929)
Q Consensus 152 ~~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~-~~l~AvY~Y~RSL~ 200 (929)
.+|..|..+|.+|+.+.|++..+|..+|++....+ +.-+|+-+|-+++.
T Consensus 17 ~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 17 GDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp THHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999998 68889999888763
No 6
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=92.41 E-value=0.29 Score=48.58 Aligned_cols=64 Identities=16% Similarity=0.070 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhcCCCCChhHHHHHHHHHH
Q 002380 154 YAAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAVDSPFSTARDNLIVAFE 217 (929)
Q Consensus 154 ~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~~Pf~~A~~NL~~lf~ 217 (929)
|..|..+|.+|+.+.|....+++++|++....++.=+|+-+|-+++...--++.+..|+.....
T Consensus 74 ~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 74 YTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 4579999999999999999999999999999999999999999998776667777666654433
No 7
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=88.61 E-value=0.21 Score=43.49 Aligned_cols=62 Identities=23% Similarity=0.208 Sum_probs=46.2
Q ss_pred HHHHHHhcchhhhhhhhcCCCCccccHHHHHHHHHHHHhcC-------CCCCCchhhhHHHHhccCCchhhHHHHHhhh
Q 002380 128 HRCLIYLGDLARYKGLYGEGDSKSREYAAASSYYLQAASLW-------PSSGNPHHQLAILASYSSDELVAVYRYFRSL 199 (929)
Q Consensus 128 hrCLi~LGDLaRYr~~~~~~~~~~~~~~~A~~yY~~A~~l~-------P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL 199 (929)
-.|+..||.+.+.. .+|..|..||.+|+.+. |..+..++.||.+....++.=+|+-||-+|+
T Consensus 5 a~~~~~la~~~~~~----------~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 5 ANAYNNLARVYREL----------GRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHHT----------T-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35677777776654 35788999999999874 3345567778888888888888888888876
No 8
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=86.71 E-value=0.33 Score=36.82 Aligned_cols=32 Identities=28% Similarity=0.230 Sum_probs=28.3
Q ss_pred HHHHHHhcCCCCCCchhhhHHHHhccCCchhh
Q 002380 160 YYLQAASLWPSSGNPHHQLAILASYSSDELVA 191 (929)
Q Consensus 160 yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~A 191 (929)
+|.+|+.+.|.+..+|+.||.+....++.-+|
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhh
Confidence 58999999999999999999999888776554
No 9
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=85.90 E-value=1.2 Score=44.11 Aligned_cols=68 Identities=18% Similarity=0.052 Sum_probs=61.1
Q ss_pred ccHHHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhcCCCCChhHHHHHHHHHHHH
Q 002380 152 REYAAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAVDSPFSTARDNLIVAFEKN 219 (929)
Q Consensus 152 ~~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~~Pf~~A~~NL~~lf~k~ 219 (929)
.+|+.|..+|.+|+.+.|.....|+.+|.+....++.-+|+=+|-|++...-.++.+.-|+-..+...
T Consensus 38 g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~ 105 (144)
T PRK15359 38 GDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMM 105 (144)
T ss_pred CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHc
Confidence 34678999999999999999999999999999999999999999999987767999999998776664
No 10
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=85.49 E-value=1.1 Score=54.14 Aligned_cols=64 Identities=22% Similarity=0.309 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhcCCCCChhHHHHHHHHHHH
Q 002380 155 AAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAVDSPFSTARDNLIVAFEK 218 (929)
Q Consensus 155 ~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~~Pf~~A~~NL~~lf~k 218 (929)
..|..||.+|+.+.|....+.|-||++.+..+..-.|+-.|.++|.+---|..|..||-.+++.
T Consensus 337 ~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kq 400 (966)
T KOG4626|consen 337 TEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQ 400 (966)
T ss_pred HHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHh
Confidence 4567777777777777777777777777777777777777777777666677777777776654
No 11
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=84.63 E-value=2.9 Score=41.96 Aligned_cols=81 Identities=20% Similarity=0.199 Sum_probs=62.0
Q ss_pred HHHHhcchhhhhhhhcCCCCccccHHHHHHHHHHHHhcCCC---CCCchhhhHHHHhccCCchhhHHHHHhhhcCCCCCh
Q 002380 130 CLIYLGDLARYKGLYGEGDSKSREYAAASSYYLQAASLWPS---SGNPHHQLAILASYSSDELVAVYRYFRSLAVDSPFS 206 (929)
Q Consensus 130 CLi~LGDLaRYr~~~~~~~~~~~~~~~A~~yY~~A~~l~P~---~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~~Pf~ 206 (929)
|+..+|-+.+-+ .+|+.|..+|.+|+.+.|. ....|+-||+++...++.=+|+-+|-+++....-..
T Consensus 37 ~~~~~g~~~~~~----------g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~ 106 (168)
T CHL00033 37 TYYRDGMSAQSE----------GEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLP 106 (168)
T ss_pred HHHHHHHHHHHc----------CCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH
Confidence 445555554443 3467899999999999876 345899999999999999999999999997755566
Q ss_pred hHHHHHHHHHHHHH
Q 002380 207 TARDNLIVAFEKNR 220 (929)
Q Consensus 207 ~A~~NL~~lf~k~r 220 (929)
.+..|+-.++....
T Consensus 107 ~~~~~la~i~~~~~ 120 (168)
T CHL00033 107 QALNNMAVICHYRG 120 (168)
T ss_pred HHHHHHHHHHHHhh
Confidence 77777776766443
No 12
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=83.61 E-value=3.4 Score=34.02 Aligned_cols=66 Identities=27% Similarity=0.260 Sum_probs=50.6
Q ss_pred cHHHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhcCCCCChhHHHHHHHHHHH
Q 002380 153 EYAAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAVDSPFSTARDNLIVAFEK 218 (929)
Q Consensus 153 ~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~~Pf~~A~~NL~~lf~k 218 (929)
+|..|..++.+++.+.|.....+..+|.+....++.-.|+-+|-+++........+..++-.++..
T Consensus 15 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 15 DYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYK 80 (100)
T ss_pred cHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHH
Confidence 467899999999999999988999999999888888888888888876554444454454444433
No 13
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=82.14 E-value=1.8 Score=52.37 Aligned_cols=67 Identities=21% Similarity=0.317 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhcCCCCChhHHHHHHHHHHHHH
Q 002380 154 YAAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAVDSPFSTARDNLIVAFEKNR 220 (929)
Q Consensus 154 ~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~~Pf~~A~~NL~~lf~k~r 220 (929)
++.|.++|.+|+.+.|....+||-||+|+-.+++.=+||-+|--+|-.+--|..|-.|+-..+....
T Consensus 370 ~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g 436 (966)
T KOG4626|consen 370 IEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMG 436 (966)
T ss_pred chHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhh
Confidence 3579999999999999999999999999999999999999999999888889999999877776643
No 14
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=80.48 E-value=3.1 Score=35.49 Aligned_cols=53 Identities=23% Similarity=0.018 Sum_probs=47.7
Q ss_pred ccHHHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhcCCCCC
Q 002380 152 REYAAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAVDSPF 205 (929)
Q Consensus 152 ~~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~~Pf 205 (929)
.+|..|..++..++.+.|..-..+.+.|.+....++.-.|+..|-+.+ ...|-
T Consensus 9 ~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l-~~~p~ 61 (73)
T PF13371_consen 9 EDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERAL-ELSPD 61 (73)
T ss_pred CCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHH-HHCCC
Confidence 578999999999999999999999999999999999999999998888 33343
No 15
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=80.41 E-value=1.5 Score=36.71 Aligned_cols=48 Identities=21% Similarity=0.126 Sum_probs=43.1
Q ss_pred ccHHHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhh
Q 002380 152 REYAAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSL 199 (929)
Q Consensus 152 ~~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL 199 (929)
.+|+.|+..|.+++...|.+...+.-||.+....++.=+|+-+|-+++
T Consensus 11 g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~ 58 (65)
T PF13432_consen 11 GDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERAL 58 (65)
T ss_dssp THHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 568899999999999999999999999999999999999997776665
No 16
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=78.93 E-value=4.2 Score=46.58 Aligned_cols=67 Identities=13% Similarity=-0.054 Sum_probs=55.3
Q ss_pred cHHHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhcCCCCChhHHHHHHHHHHHH
Q 002380 153 EYAAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAVDSPFSTARDNLIVAFEKN 219 (929)
Q Consensus 153 ~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~~Pf~~A~~NL~~lf~k~ 219 (929)
+|..|..+|.+|+.+.|.++..|+.+|.++...++.=.|+-+|-+++-..--.+.+...+..+..+.
T Consensus 51 ~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 51 NFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred CHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 3467999999999999999999999999999999999999999999876555666665655555554
No 17
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=78.66 E-value=4.2 Score=49.53 Aligned_cols=66 Identities=15% Similarity=0.036 Sum_probs=45.9
Q ss_pred ccHHHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhcCCCCChhHHHHHHHHHH
Q 002380 152 REYAAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAVDSPFSTARDNLIVAFE 217 (929)
Q Consensus 152 ~~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~~Pf~~A~~NL~~lf~ 217 (929)
.+|..|..+|.+|+.+.|.+..+|.+||.+....++.=.|+-+|-+++-..--.+.+..++-.++.
T Consensus 413 g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~ 478 (615)
T TIGR00990 413 GEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLL 478 (615)
T ss_pred CCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 457788888888888888888888888888887777777777777776543223444445544433
No 18
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=77.66 E-value=4 Score=33.62 Aligned_cols=47 Identities=21% Similarity=0.174 Sum_probs=40.2
Q ss_pred cHHHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhh
Q 002380 153 EYAAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSL 199 (929)
Q Consensus 153 ~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL 199 (929)
++..|..+|..++.+.|.....+..+|.+....++.-.|.-++.+++
T Consensus 49 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 95 (100)
T cd00189 49 KYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKAL 95 (100)
T ss_pred HHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 45689999999999999999999999999988888777777776654
No 19
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=76.86 E-value=3.6 Score=29.83 Aligned_cols=31 Identities=29% Similarity=0.416 Sum_probs=23.5
Q ss_pred HHHhcchhhhhhhhcCCCCccccHHHHHHHHHHHHhcCCCC
Q 002380 131 LIYLGDLARYKGLYGEGDSKSREYAAASSYYLQAASLWPSS 171 (929)
Q Consensus 131 Li~LGDLaRYr~~~~~~~~~~~~~~~A~~yY~~A~~l~P~~ 171 (929)
+..||.+.... .+|..|+.+|.+|+.+.|.+
T Consensus 4 ~~~lg~~~~~~----------~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 4 WYYLGQAYYQL----------GNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHT----------T-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHh----------CCHHHHHHHHHHHHHHCcCC
Confidence 45666666554 36789999999999999974
No 20
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=75.63 E-value=3.9 Score=41.05 Aligned_cols=47 Identities=26% Similarity=0.377 Sum_probs=37.9
Q ss_pred HHHHhcchhhhhhhhcCCCCccccHHHHHHHHHHHHhcCCCCCCchhhhHHHHhccC
Q 002380 130 CLIYLGDLARYKGLYGEGDSKSREYAAASSYYLQAASLWPSSGNPHHQLAILASYSS 186 (929)
Q Consensus 130 CLi~LGDLaRYr~~~~~~~~~~~~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~ 186 (929)
.+..||.+.+++. +++.|..+|.+|+.+.|..+..++.+|.+....+
T Consensus 74 ~~~~lg~~~~~~g----------~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~ 120 (168)
T CHL00033 74 ILYNIGLIHTSNG----------EHTKALEYYFQALERNPFLPQALNNMAVICHYRG 120 (168)
T ss_pred HHHHHHHHHHHcC----------CHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhh
Confidence 4566777766653 4568999999999999999999999999987443
No 21
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=73.54 E-value=9.3 Score=38.17 Aligned_cols=65 Identities=14% Similarity=-0.001 Sum_probs=53.9
Q ss_pred cHHHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhcCCCCChhHHHHHHHHHH
Q 002380 153 EYAAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAVDSPFSTARDNLIVAFE 217 (929)
Q Consensus 153 ~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~~Pf~~A~~NL~~lf~ 217 (929)
+|..|..+|.+|+...|.+...+..+|.++...++.-.|+-+|-+++........+..|+-.++.
T Consensus 46 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 110 (234)
T TIGR02521 46 DLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLC 110 (234)
T ss_pred CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999998765556666666655443
No 22
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=73.47 E-value=3.4 Score=31.36 Aligned_cols=30 Identities=37% Similarity=0.478 Sum_probs=22.1
Q ss_pred HHHHhcchhhhhhhhcCCCCccccHHHHHHHHHHHHhcCC
Q 002380 130 CLIYLGDLARYKGLYGEGDSKSREYAAASSYYLQAASLWP 169 (929)
Q Consensus 130 CLi~LGDLaRYr~~~~~~~~~~~~~~~A~~yY~~A~~l~P 169 (929)
||..||++.+-. .+|++|..||.+|+.+..
T Consensus 1 al~~Lg~~~~~~----------g~~~~Ai~~y~~aL~l~~ 30 (36)
T PF13176_consen 1 ALNNLGRIYRQQ----------GDYEKAIEYYEQALALAR 30 (36)
T ss_dssp HHHHHHHHHHHC----------T-HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHc----------CCHHHHHHHHHHHHHhcc
Confidence 567788886654 468899999999776543
No 23
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=73.04 E-value=3.9 Score=29.96 Aligned_cols=31 Identities=29% Similarity=0.373 Sum_probs=23.6
Q ss_pred HHHHhcchhhhhhhhcCCCCccccHHHHHHHHHHHHhcCCC
Q 002380 130 CLIYLGDLARYKGLYGEGDSKSREYAAASSYYLQAASLWPS 170 (929)
Q Consensus 130 CLi~LGDLaRYr~~~~~~~~~~~~~~~A~~yY~~A~~l~P~ 170 (929)
++..+|.+.... .+|+.|..+|.+|+.+.|+
T Consensus 3 ~~~~~g~~~~~~----------~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQL----------GDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHT----------T-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHh----------CCchHHHHHHHHHHHHCcC
Confidence 456677775554 3567999999999999996
No 24
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=72.51 E-value=5.8 Score=45.41 Aligned_cols=67 Identities=21% Similarity=0.110 Sum_probs=57.1
Q ss_pred ccHHHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhcCCCCChhHHHHHHHHHHH
Q 002380 152 REYAAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAVDSPFSTARDNLIVAFEK 218 (929)
Q Consensus 152 ~~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~~Pf~~A~~NL~~lf~k 218 (929)
.+|..|..+|.+|+.+.|.....|..+|.++...++.=.|+-+|-|++-..-.+..+.-++-.++..
T Consensus 16 ~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~ 82 (356)
T PLN03088 16 DDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMK 82 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence 5788999999999999999999999999999999999999999999987665577776666555544
No 25
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=72.26 E-value=7 Score=37.09 Aligned_cols=46 Identities=22% Similarity=0.126 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhh
Q 002380 154 YAAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSL 199 (929)
Q Consensus 154 ~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL 199 (929)
|..|..+|.+|+.+.|.+...|..+|.+....++.-.|+=+|-+++
T Consensus 67 ~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 112 (135)
T TIGR02552 67 YEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALKALDLAI 112 (135)
T ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4579999999999999999999999999998887777766665554
No 26
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=72.24 E-value=3.5 Score=49.55 Aligned_cols=64 Identities=20% Similarity=0.222 Sum_probs=56.7
Q ss_pred cccHHHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhcCCCCChhHHHHHHH
Q 002380 151 SREYAAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAVDSPFSTARDNLIV 214 (929)
Q Consensus 151 ~~~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~~Pf~~A~~NL~~ 214 (929)
.++|++|..+|..|+.+.|..+..+|-||-.-......-+||-=|-|+|--+--|--+|-||-.
T Consensus 443 s~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgI 506 (579)
T KOG1125|consen 443 SGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGI 506 (579)
T ss_pred chHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhh
Confidence 4689999999999999999999999999877777788899999999999887778888888743
No 27
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=68.75 E-value=11 Score=45.60 Aligned_cols=83 Identities=22% Similarity=0.259 Sum_probs=68.8
Q ss_pred HHHHHHhcchhhhhhhhcCCCCccccHHHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhcCCCCChh
Q 002380 128 HRCLIYLGDLARYKGLYGEGDSKSREYAAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAVDSPFST 207 (929)
Q Consensus 128 hrCLi~LGDLaRYr~~~~~~~~~~~~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~~Pf~~ 207 (929)
|-.++-||=+.|+... |..|..||++|+.+.|.+-..|-=+|.|+.-.++.=.|+=||=+||+-+.=-..
T Consensus 455 ~p~~~NLGH~~Rkl~~----------~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~ 524 (611)
T KOG1173|consen 455 EPTLNNLGHAYRKLNK----------YEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIF 524 (611)
T ss_pred hHHHHhHHHHHHHHhh----------HHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHH
Confidence 4457889999888754 457999999999999999999999999999999999999999999987644446
Q ss_pred HHHHHHHHHHHHH
Q 002380 208 ARDNLIVAFEKNR 220 (929)
Q Consensus 208 A~~NL~~lf~k~r 220 (929)
+.+=|....+.+.
T Consensus 525 ~~~lL~~aie~~~ 537 (611)
T KOG1173|consen 525 ISELLKLAIEDSE 537 (611)
T ss_pred HHHHHHHHHHhhh
Confidence 6666666666643
No 28
>PRK11189 lipoprotein NlpI; Provisional
Probab=67.62 E-value=9.5 Score=42.33 Aligned_cols=66 Identities=21% Similarity=0.134 Sum_probs=56.5
Q ss_pred cHHHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhcCCCCChhHHHHHHHHHHH
Q 002380 153 EYAAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAVDSPFSTARDNLIVAFEK 218 (929)
Q Consensus 153 ~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~~Pf~~A~~NL~~lf~k 218 (929)
++..|...|.+|+.+.|.....|+.+|.+....++.=.|+-.|-+++...--+..+.-|+-.++..
T Consensus 79 ~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~ 144 (296)
T PRK11189 79 LRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYY 144 (296)
T ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999999999999999886554578888888766543
No 29
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=66.52 E-value=13 Score=45.29 Aligned_cols=65 Identities=18% Similarity=0.049 Sum_probs=47.4
Q ss_pred cHHHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhcCCCCChhHHHHHHHHHH
Q 002380 153 EYAAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAVDSPFSTARDNLIVAFE 217 (929)
Q Consensus 153 ~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~~Pf~~A~~NL~~lf~ 217 (929)
+|..|..+|.+|+.+.|.....|+.+|.++...++.=.|+-+|-+++...-.+..+.-+|-.++.
T Consensus 380 ~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~ 444 (615)
T TIGR00990 380 DPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQY 444 (615)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHH
Confidence 56778888888888888888888888888888888888888888877655445555555544443
No 30
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=65.54 E-value=14 Score=37.25 Aligned_cols=67 Identities=22% Similarity=0.277 Sum_probs=52.1
Q ss_pred ccHHHHHHHHHHHHhcCCCC---CCchhhhHHHHhccCCchhhHHHHHhhhcCCCCChhHHHHHHHHHHH
Q 002380 152 REYAAASSYYLQAASLWPSS---GNPHHQLAILASYSSDELVAVYRYFRSLAVDSPFSTARDNLIVAFEK 218 (929)
Q Consensus 152 ~~~~~A~~yY~~A~~l~P~~---G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~~Pf~~A~~NL~~lf~k 218 (929)
.+|..|..+|.+|+.+.|.. +..++.||+++...++.-.|+-+|.+++-...-...+..++-.++..
T Consensus 49 g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 118 (172)
T PRK02603 49 GEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHK 118 (172)
T ss_pred CCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 35678999999999988764 46899999999999999999999999987644345555555444433
No 31
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=65.18 E-value=10 Score=36.04 Aligned_cols=67 Identities=15% Similarity=0.017 Sum_probs=55.2
Q ss_pred cHHHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhcCCCCChhHHHHHHHHHHHH
Q 002380 153 EYAAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAVDSPFSTARDNLIVAFEKN 219 (929)
Q Consensus 153 ~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~~Pf~~A~~NL~~lf~k~ 219 (929)
++..|..+|.+++.+.|.+...+..+|.+....++.=+|+.+|-+++......+...-++-.++...
T Consensus 32 ~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~ 98 (135)
T TIGR02552 32 RYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLAL 98 (135)
T ss_pred cHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHc
Confidence 4567999999999999999999999999999888888999999888776555666666666655554
No 32
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=64.67 E-value=22 Score=37.38 Aligned_cols=66 Identities=21% Similarity=0.031 Sum_probs=51.2
Q ss_pred cHHHHHHHHHHHHhcCCCCCCchhhhHHH-HhccCC--chhhHHHHHhhhcCCCCChhHHHHHHHHHHH
Q 002380 153 EYAAASSYYLQAASLWPSSGNPHHQLAIL-ASYSSD--ELVAVYRYFRSLAVDSPFSTARDNLIVAFEK 218 (929)
Q Consensus 153 ~~~~A~~yY~~A~~l~P~~G~pynQLAvL-a~~~~~--~l~AvY~Y~RSL~~~~Pf~~A~~NL~~lf~k 218 (929)
+++.|...|.+|..+.|++...+..+|.+ +...++ .-+|.-.+-+++...--+..+..+|-..+.+
T Consensus 88 ~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~ 156 (198)
T PRK10370 88 DYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFM 156 (198)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHH
Confidence 56789999999999999999999999985 444454 3677777777777666688888888655443
No 33
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=61.19 E-value=1.1e+02 Score=33.81 Aligned_cols=159 Identities=21% Similarity=0.234 Sum_probs=96.9
Q ss_pred HHHHHHHHhcChhhhhhchHHHHHHH-H--HHHHHHHHHHHHHHhhhccCCCCcccccCCCchhhHHHHHHHHHHHHHHH
Q 002380 2 RENYEAIILEDHAFSEQHNVEYALWQ-L--HYRRIEELRAHYSAAVSSAGSNTSQATKVPLRSDRVTKIRQQFKTFLSEA 78 (929)
Q Consensus 2 Re~ye~iIl~D~~fa~~~~VE~~LWk-~--hYk~Ie~fRk~ik~~~~~~~s~~~Q~~k~~~~~~~~rkl~~~f~~fLk~a 78 (929)
+++.++.|-.||.+...+-+--.+.. . +=.--+.||+.++-. ++. -.+..+|-.||.+
T Consensus 55 ~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~------------p~~------GdVLNNYG~FLC~- 115 (250)
T COG3063 55 KKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA------------PNN------GDVLNNYGAFLCA- 115 (250)
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC------------CCc------cchhhhhhHHHHh-
Confidence 46778888888885544333322221 0 001245677766521 110 1366788999864
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCccccccccccCCCCchhhhhhHHHHHHHHHHhcchhhhhhhhcCCCCccccHHHHH
Q 002380 79 TGFYHELILKIRAKYGLPLGNFSEDSENRIIMDKDGKKSSEVKKGLVSCHRCLIYLGDLARYKGLYGEGDSKSREYAAAS 158 (929)
Q Consensus 79 ~~FY~~LI~~L~~~y~l~l~~~~~~~~~~~v~~kd~~~s~~~k~al~schrCLi~LGDLaRYr~~~~~~~~~~~~~~~A~ 158 (929)
.+-|..=++.+...-.-|. +-... ..... .=-|-+-.|+ ++.|+
T Consensus 116 qg~~~eA~q~F~~Al~~P~--Y~~~s-------------~t~eN----~G~Cal~~gq-----------------~~~A~ 159 (250)
T COG3063 116 QGRPEEAMQQFERALADPA--YGEPS-------------DTLEN----LGLCALKAGQ-----------------FDQAE 159 (250)
T ss_pred CCChHHHHHHHHHHHhCCC--CCCcc-------------hhhhh----hHHHHhhcCC-----------------chhHH
Confidence 4467777777766655442 10000 00000 0112333333 36799
Q ss_pred HHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhcCCCCChhHHHHHHHHHHH
Q 002380 159 SYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAVDSPFSTARDNLIVAFEK 218 (929)
Q Consensus 159 ~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~~Pf~~A~~NL~~lf~k 218 (929)
.||.+|+.+.|..+-+.-.||-+....++...|-+|+.|=...-. .+| ++|....+-
T Consensus 160 ~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~--~~A-~sL~L~iri 216 (250)
T COG3063 160 EYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGG--AQA-ESLLLGIRI 216 (250)
T ss_pred HHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhccc--ccH-HHHHHHHHH
Confidence 999999999999999999999999999999999999998765544 332 455544443
No 34
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=60.68 E-value=5.3 Score=48.77 Aligned_cols=50 Identities=14% Similarity=0.162 Sum_probs=46.4
Q ss_pred cccHHHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhc
Q 002380 151 SREYAAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLA 200 (929)
Q Consensus 151 ~~~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~ 200 (929)
..+|++|..||++|+.+.|..-++|.=||+++.-++..-.|.+||-|++-
T Consensus 468 ~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~ 517 (638)
T KOG1126|consen 468 TEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE 517 (638)
T ss_pred hHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhc
Confidence 35689999999999999999999999999999999999999999998873
No 35
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=60.58 E-value=30 Score=34.47 Aligned_cols=49 Identities=18% Similarity=0.087 Sum_probs=44.3
Q ss_pred cHHHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhcC
Q 002380 153 EYAAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAV 201 (929)
Q Consensus 153 ~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~ 201 (929)
++..|..+|.+|+.+.|.....+..+|.++...++.-.|+-++-+++-.
T Consensus 150 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 198 (234)
T TIGR02521 150 DFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQT 198 (234)
T ss_pred CHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4678999999999999999999999999999999998899888888765
No 36
>PRK12370 invasion protein regulator; Provisional
Probab=59.53 E-value=22 Score=43.08 Aligned_cols=67 Identities=9% Similarity=0.005 Sum_probs=56.8
Q ss_pred ccHHHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhcCCCCChhHHHHHHHHHHH
Q 002380 152 REYAAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAVDSPFSTARDNLIVAFEK 218 (929)
Q Consensus 152 ~~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~~Pf~~A~~NL~~lf~k 218 (929)
.++..|..+|.+|+.+.|.+...|..+|.+....++.=.|+-+|-|++...--++.+.-++-.++..
T Consensus 318 ~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~ 384 (553)
T PRK12370 318 NAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFM 384 (553)
T ss_pred hHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 3478999999999999999999999999999999999999999999987765567777777555544
No 37
>PRK12370 invasion protein regulator; Provisional
Probab=59.15 E-value=16 Score=44.32 Aligned_cols=51 Identities=22% Similarity=0.118 Sum_probs=46.5
Q ss_pred ccHHHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhcCC
Q 002380 152 REYAAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAVD 202 (929)
Q Consensus 152 ~~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~ 202 (929)
.+|+.|..+|.+|+.+.|.+...|+.+|.+....++.=+|+-+|-|++...
T Consensus 352 g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~ 402 (553)
T PRK12370 352 SEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLD 402 (553)
T ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 357889999999999999999999999999999999999999999987653
No 38
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=54.73 E-value=13 Score=27.00 Aligned_cols=31 Identities=26% Similarity=0.412 Sum_probs=22.9
Q ss_pred HHHHhcchhhhhhhhcCCCCccccHHHHHHHHHHHHhcCCC
Q 002380 130 CLIYLGDLARYKGLYGEGDSKSREYAAASSYYLQAASLWPS 170 (929)
Q Consensus 130 CLi~LGDLaRYr~~~~~~~~~~~~~~~A~~yY~~A~~l~P~ 170 (929)
.+..+|++.... .+++.|..+|.+|+.+.|+
T Consensus 3 ~~~~lg~~y~~~----------~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQL----------GDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHT----------TSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHc----------CCHHHHHHHHHHHHhhCCC
Confidence 355666665544 3567899999999999885
No 39
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=54.73 E-value=26 Score=38.34 Aligned_cols=64 Identities=23% Similarity=0.193 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhcCCC-C-ChhHHHHHHHHHHH
Q 002380 155 AAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAVDS-P-FSTARDNLIVAFEK 218 (929)
Q Consensus 155 ~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~~-P-f~~A~~NL~~lf~k 218 (929)
+.|.+.|++|+.+.|.+|...|--|.---.++..-+|.=+|-|++.... | -+.+.+|+-...-+
T Consensus 86 ~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~ 151 (250)
T COG3063 86 DLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALK 151 (250)
T ss_pred hhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhh
Confidence 5799999999999999999999998877777888889999999987654 3 35567777655443
No 40
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=53.98 E-value=12 Score=31.25 Aligned_cols=44 Identities=16% Similarity=-0.034 Sum_probs=36.0
Q ss_pred ccHHHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHH
Q 002380 152 REYAAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRY 195 (929)
Q Consensus 152 ~~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y 195 (929)
.+|..|..+|.+|+...|.+......||.++...++.=+|.=.+
T Consensus 5 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l 48 (68)
T PF14559_consen 5 GDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELL 48 (68)
T ss_dssp THHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 46889999999999999999999999999998876554444333
No 41
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=53.69 E-value=14 Score=43.77 Aligned_cols=49 Identities=16% Similarity=0.060 Sum_probs=45.0
Q ss_pred cHHHHHHHHHHHHhcCCCCCCc---hhhhHHHHhccCCchhhHHHHHhhhcC
Q 002380 153 EYAAASSYYLQAASLWPSSGNP---HHQLAILASYSSDELVAVYRYFRSLAV 201 (929)
Q Consensus 153 ~~~~A~~yY~~A~~l~P~~G~p---ynQLAvLa~~~~~~l~AvY~Y~RSL~~ 201 (929)
+|+.|...|.+|+.+.|+.... |+++|.++...++.=+|+-+|-|++..
T Consensus 90 ryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 90 RVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4568999999999999999954 999999999999999999999999975
No 42
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=51.88 E-value=49 Score=36.00 Aligned_cols=135 Identities=22% Similarity=0.248 Sum_probs=68.2
Q ss_pred HHHHHHhcChhhhhhchHHHHHHHHHHH-HHHHHHHHHHHhhhccCCCCcccccCCCchhhHHHHHHHHHHHHHHHHHHH
Q 002380 4 NYEAIILEDHAFSEQHNVEYALWQLHYR-RIEELRAHYSAAVSSAGSNTSQATKVPLRSDRVTKIRQQFKTFLSEATGFY 82 (929)
Q Consensus 4 ~ye~iIl~D~~fa~~~~VE~~LWk~hYk-~Ie~fRk~ik~~~~~~~s~~~Q~~k~~~~~~~~rkl~~~f~~fLk~a~~FY 82 (929)
...+++-.++++.. =|..|-.+.|| .|...|..++.+.+- .+..++..+......++..-.+.-++-..+.
T Consensus 23 ~mk~~~~~~~eLt~---eERnLlsvayKn~i~~~R~s~R~l~~~-----e~~~~~~~~~~~~~~i~~yk~kie~EL~~~C 94 (236)
T PF00244_consen 23 YMKQLIEMNPELTE---EERNLLSVAYKNVIGSRRASWRILSSI-----EQKEENKGNEKQVKLIKDYKKKIEDELIDIC 94 (236)
T ss_dssp HHHHHHHTSS---H---HHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHTTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCCCCCH---HHHHHHHHHHHhccccchHHHHhhhhH-----hhhhcccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 34466666666533 23344467787 588888877654110 0111111123333334333344445555555
Q ss_pred HHHHHHHHHHhCCCCCCCCCccccccccccCCCCchhhhhhHHHHHHHHHHhcchhhhhhhhcCCCCccccHHHHHHHHH
Q 002380 83 HELILKIRAKYGLPLGNFSEDSENRIIMDKDGKKSSEVKKGLVSCHRCLIYLGDLARYKGLYGEGDSKSREYAAASSYYL 162 (929)
Q Consensus 83 ~~LI~~L~~~y~l~l~~~~~~~~~~~v~~kd~~~s~~~k~al~schrCLi~LGDLaRYr~~~~~~~~~~~~~~~A~~yY~ 162 (929)
..+|.-|.... +| .. .. ..+.+.+++ .-||..||...+...+.+..--..|...|.
T Consensus 95 ~eii~lId~~L-ip--------------~~---~~---~eskvfy~K---mkgDyyRYlaE~~~~~~~~~~~~~a~~aY~ 150 (236)
T PF00244_consen 95 NEIIRLIDKSL-IP--------------SA---TS---PESKVFYYK---MKGDYYRYLAEFDSGDEKKEAAEKALEAYE 150 (236)
T ss_dssp HHHHHHHHHTC-HH--------------HS----S---HHHHHHHHH---HHHHHHHHHHHCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-hc--------------cc---cc---hhHHHHHHH---HhccccccccccccchhhHHHHHHHHHhhh
Confidence 55555544321 11 00 00 112334433 489999999888643322222378999999
Q ss_pred HHHhcCCC
Q 002380 163 QAASLWPS 170 (929)
Q Consensus 163 ~A~~l~P~ 170 (929)
+|..+.=.
T Consensus 151 ~A~~~a~~ 158 (236)
T PF00244_consen 151 EALEIAKK 158 (236)
T ss_dssp HHHHHHHH
T ss_pred hHHHHHhc
Confidence 99876543
No 43
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=51.54 E-value=21 Score=36.81 Aligned_cols=44 Identities=14% Similarity=0.012 Sum_probs=33.3
Q ss_pred ccHHHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHH
Q 002380 152 REYAAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRY 195 (929)
Q Consensus 152 ~~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y 195 (929)
.+|..|...|.+|..+.|+.-+||.++|+.....++.-.|.--|
T Consensus 83 g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~A~~aF 126 (157)
T PRK15363 83 KHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCYAIKAL 126 (157)
T ss_pred hhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHH
Confidence 35678888888888888888888888888887766655544443
No 44
>PRK11189 lipoprotein NlpI; Provisional
Probab=51.49 E-value=19 Score=39.89 Aligned_cols=53 Identities=17% Similarity=0.105 Sum_probs=44.7
Q ss_pred ccHHHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhcCCCCC
Q 002380 152 REYAAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAVDSPF 205 (929)
Q Consensus 152 ~~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~~Pf 205 (929)
.+|+.|...|.+|+.+.|+....|+.+|++....++.=.|+=.|-+++. ..|-
T Consensus 112 g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~-~~P~ 164 (296)
T PRK11189 112 GNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ-DDPN 164 (296)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-hCCC
Confidence 3567899999999999999999999999999988888888877777764 3443
No 45
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=50.91 E-value=1.6e+02 Score=32.53 Aligned_cols=49 Identities=20% Similarity=0.263 Sum_probs=32.8
Q ss_pred HHHHHHHHHhcchhhhhhhhcCCCCccccHHHHHHHHHHHHhcCCCCCCchh
Q 002380 125 VSCHRCLIYLGDLARYKGLYGEGDSKSREYAAASSYYLQAASLWPSSGNPHH 176 (929)
Q Consensus 125 ~schrCLi~LGDLaRYr~~~~~~~~~~~~~~~A~~yY~~A~~l~P~~G~pyn 176 (929)
+.+++ .-||..||...+...+.+..--+.|...|..|..+.=..=.|.|
T Consensus 118 VFy~K---mKGDYyRYlaE~~~~~e~~~~~~~a~~aY~~A~e~a~~~L~pt~ 166 (244)
T smart00101 118 VFYLK---MKGDYHRYLAEFKTGAERKEAAENTLVAYKSAQDIALAELPPTH 166 (244)
T ss_pred HHHHH---HHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHccCCCCC
Confidence 45555 48999999998865543322237899999999987433333444
No 46
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=49.79 E-value=11 Score=29.67 Aligned_cols=29 Identities=24% Similarity=0.202 Sum_probs=25.4
Q ss_pred cHHHHHHHHHHHHhcCCCCCCchhhhHHH
Q 002380 153 EYAAASSYYLQAASLWPSSGNPHHQLAIL 181 (929)
Q Consensus 153 ~~~~A~~yY~~A~~l~P~~G~pynQLAvL 181 (929)
+++.|+++|.+++.+.|++-..+..||.|
T Consensus 16 ~~~~A~~~~~~~l~~~P~~~~a~~~La~l 44 (44)
T PF13428_consen 16 QPDEAERLLRRALALDPDDPEAWRALAQL 44 (44)
T ss_pred CHHHHHHHHHHHHHHCcCCHHHHHHhhhC
Confidence 45789999999999999999998888754
No 47
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=49.34 E-value=35 Score=45.17 Aligned_cols=66 Identities=21% Similarity=0.148 Sum_probs=58.4
Q ss_pred ccHHHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhcCCCCChhHHHHHHHHHH
Q 002380 152 REYAAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAVDSPFSTARDNLIVAFE 217 (929)
Q Consensus 152 ~~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~~Pf~~A~~NL~~lf~ 217 (929)
.++..|+.+|.+|+.+.|....++..||.++...++.=.|+=+|-+++...-....+..+|..++.
T Consensus 365 g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~ 430 (1157)
T PRK11447 365 NNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR 430 (1157)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 467899999999999999999999999999999999999999999998776667788888877764
No 48
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=43.63 E-value=39 Score=40.33 Aligned_cols=67 Identities=19% Similarity=0.159 Sum_probs=49.9
Q ss_pred ccHHHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhcCCCCChhHHHHHHHHHHH
Q 002380 152 REYAAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAVDSPFSTARDNLIVAFEK 218 (929)
Q Consensus 152 ~~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~~Pf~~A~~NL~~lf~k 218 (929)
++.+.|...|+.|+++.|..=+++.=||--+---.=++=|+|||-|++.++--=+--+.-|-..++|
T Consensus 378 KNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~k 444 (559)
T KOG1155|consen 378 KNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEK 444 (559)
T ss_pred cccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence 3457889999999999999888888888777666778899999999998764334334444444444
No 49
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=40.57 E-value=64 Score=40.15 Aligned_cols=66 Identities=8% Similarity=-0.213 Sum_probs=53.5
Q ss_pred cHHHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhcCCCCChhHHHHHHHHHHH
Q 002380 153 EYAAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAVDSPFSTARDNLIVAFEK 218 (929)
Q Consensus 153 ~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~~Pf~~A~~NL~~lf~k 218 (929)
++..|...|.+++.+.|.+..++..||.++...++.=.|+-+|-+++...-....+..++..++..
T Consensus 91 ~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~ 156 (656)
T PRK15174 91 QPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVL 156 (656)
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 456789999999999999999999999998888888889988888887765567777777666443
No 50
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=40.26 E-value=38 Score=34.20 Aligned_cols=35 Identities=26% Similarity=0.348 Sum_probs=30.4
Q ss_pred cHHHHHHHHHHHHhcCCCCCCchhhhHHHHhccCC
Q 002380 153 EYAAASSYYLQAASLWPSSGNPHHQLAILASYSSD 187 (929)
Q Consensus 153 ~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~ 187 (929)
+|+.|..+|.+|+.+.|....++..+|.+....++
T Consensus 87 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 121 (172)
T PRK02603 87 EHDKALEYYHQALELNPKQPSALNNIAVIYHKRGE 121 (172)
T ss_pred CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC
Confidence 46789999999999999999999999988876554
No 51
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=39.74 E-value=45 Score=21.70 Aligned_cols=18 Identities=39% Similarity=0.625 Sum_probs=15.5
Q ss_pred cHHHHHHHHHHHHhcCCC
Q 002380 153 EYAAASSYYLQAASLWPS 170 (929)
Q Consensus 153 ~~~~A~~yY~~A~~l~P~ 170 (929)
+|..|..+|.+|+.+.|.
T Consensus 16 ~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 16 DYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHccCCC
Confidence 467899999999998885
No 52
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=39.44 E-value=71 Score=28.91 Aligned_cols=67 Identities=19% Similarity=0.162 Sum_probs=50.1
Q ss_pred ccHHHHHHHHHHHHhcCCCCC---CchhhhHHHHhccCCchhhHHHHHhhhcC--CCC-ChhHHHHHHHHHHH
Q 002380 152 REYAAASSYYLQAASLWPSSG---NPHHQLAILASYSSDELVAVYRYFRSLAV--DSP-FSTARDNLIVAFEK 218 (929)
Q Consensus 152 ~~~~~A~~yY~~A~~l~P~~G---~pynQLAvLa~~~~~~l~AvY~Y~RSL~~--~~P-f~~A~~NL~~lf~k 218 (929)
.+|..|..+|.+++...|... ..+..+|.++...++.=.|+-+|-+.+.. ..| .+.+..++-.++.+
T Consensus 16 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 88 (119)
T TIGR02795 16 GDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQE 88 (119)
T ss_pred CCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHH
Confidence 467899999999999999874 47888999999888877788887776643 223 25566676666654
No 53
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=38.75 E-value=40 Score=34.72 Aligned_cols=64 Identities=16% Similarity=0.046 Sum_probs=55.9
Q ss_pred cHHHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhcCCCCChhHHHHHHHHH
Q 002380 153 EYAAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAVDSPFSTARDNLIVAF 216 (929)
Q Consensus 153 ~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~~Pf~~A~~NL~~lf 216 (929)
+++.|++.|+.+..+.|.+-.-|.-||.+....++.-.||+.|-|++....-.+.+.-|+-..+
T Consensus 50 ~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~ 113 (157)
T PRK15363 50 EFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECY 113 (157)
T ss_pred CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 4578999999999999999999999999999999999999999999988766666666664443
No 54
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=37.81 E-value=1e+02 Score=32.41 Aligned_cols=57 Identities=18% Similarity=0.054 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhcCCCCChhHHH
Q 002380 154 YAAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAVDSPFSTARD 210 (929)
Q Consensus 154 ~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~~Pf~~A~~ 210 (929)
+..|+..|.+|+.+.|.+...++.||+.+...++.=+|+=+|-+.+-...|-..-+.
T Consensus 126 ~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~~ 182 (198)
T PRK10370 126 TPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNRTQ 182 (198)
T ss_pred cHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHH
Confidence 468999999999999999999999999999999999999999999988888665443
No 55
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=37.59 E-value=30 Score=39.71 Aligned_cols=45 Identities=24% Similarity=0.201 Sum_probs=39.0
Q ss_pred cccHHHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHH
Q 002380 151 SREYAAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRY 195 (929)
Q Consensus 151 ~~~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y 195 (929)
..++..|.++++.|+.-.|.+|.++|-||||+...|+.+.|=-+|
T Consensus 408 iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll 452 (478)
T KOG1129|consen 408 IGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLL 452 (478)
T ss_pred ccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHH
Confidence 356778999999999999999999999999999999888764433
No 56
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=35.36 E-value=91 Score=34.65 Aligned_cols=68 Identities=19% Similarity=0.128 Sum_probs=48.7
Q ss_pred cHHHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhcCCCCChhHHHHHHHHHHHHH
Q 002380 153 EYAAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAVDSPFSTARDNLIVAFEKNR 220 (929)
Q Consensus 153 ~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~~Pf~~A~~NL~~lf~k~r 220 (929)
++..|+.=|.+|+.+.|..-.+.|-||++..-.+|.=+|.=+..+.-....--...+.||-.+..++.
T Consensus 149 r~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g 216 (257)
T COG5010 149 RFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQG 216 (257)
T ss_pred ChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcC
Confidence 45677777788888888777788888877777777777777666666555556667777777766654
No 57
>PF12196 hNIFK_binding: FHA Ki67 binding domain of hNIFK; InterPro: IPR021043 This entry represents eukaryotic proteins that contain a domain of approximately 40 amino acids in length. These proteins are found in association with PF00076 from PFAM. There are two conserved sequence motifs: TPVCTP and LERRKS. This domain is found on the human nucleolar protein hNIFK. It binds to the fork-head-associated domain of human Ki67. High-affinity binding requires sequential phosphorylation by two kinases, CDK1 and GSK3, yielding pThr238, pThr234 and pSer230. This interaction is involved in cell cycle regulation []. ; PDB: 2AFF_B.
Probab=34.15 E-value=15 Score=29.41 Aligned_cols=16 Identities=44% Similarity=0.752 Sum_probs=8.0
Q ss_pred CCCCCCcceeEEeccC
Q 002380 589 YMDGEEEDEVIVFKPA 604 (929)
Q Consensus 589 ~~~~~~~~evi~fkp~ 604 (929)
.|++||+|.-||||=.
T Consensus 25 emndDd~D~EIv~K~P 40 (41)
T PF12196_consen 25 EMNDDDEDDEIVFKQP 40 (41)
T ss_dssp H--GGGGS-SEEESS-
T ss_pred cccCCCcCCeeEeccC
Confidence 3567744444999854
No 58
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=33.84 E-value=85 Score=39.07 Aligned_cols=63 Identities=14% Similarity=0.015 Sum_probs=49.5
Q ss_pred HHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhcCCCCChhHHHHHHHHHHH
Q 002380 156 AASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAVDSPFSTARDNLIVAFEK 218 (929)
Q Consensus 156 ~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~~Pf~~A~~NL~~lf~k 218 (929)
.|..+|.+|+.+.|.....++.||.+....++.=.|+=+|-+++...--.+.+..+|-.++.+
T Consensus 268 ~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~ 330 (656)
T PRK15174 268 QAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQ 330 (656)
T ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 488899999999999888899999988888888888888877776544466677777666554
No 59
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=32.71 E-value=99 Score=37.85 Aligned_cols=67 Identities=18% Similarity=0.074 Sum_probs=52.6
Q ss_pred ccHHHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhcCCCCChhHHHHHHHHHHH
Q 002380 152 REYAAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAVDSPFSTARDNLIVAFEK 218 (929)
Q Consensus 152 ~~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~~Pf~~A~~NL~~lf~k 218 (929)
.+|+.|..+|.+++.+.|.....+..+|.+....++.-.|+-+|-+++........+...+..++..
T Consensus 615 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 681 (899)
T TIGR02917 615 GDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLA 681 (899)
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 4678899999999999999999999999998888888888888888776554456666666555544
No 60
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=32.22 E-value=75 Score=40.59 Aligned_cols=66 Identities=21% Similarity=0.190 Sum_probs=52.9
Q ss_pred cHHHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhcCCCCChhHHHHHHHHHHH
Q 002380 153 EYAAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAVDSPFSTARDNLIVAFEK 218 (929)
Q Consensus 153 ~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~~Pf~~A~~NL~~lf~k 218 (929)
+..+|..+...|..+.|..=.-|-.+|-++...++.=+|.|||.|++-..-+--.-..+=..++++
T Consensus 188 d~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~ 253 (895)
T KOG2076|consen 188 DIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQK 253 (895)
T ss_pred cHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 346899999999999999999999999999999999999999999997766543333333444443
No 61
>PRK10993 outer membrane protease; Reviewed
Probab=31.93 E-value=28 Score=39.62 Aligned_cols=30 Identities=30% Similarity=0.463 Sum_probs=24.8
Q ss_pred CCCcccccccCCCCCCCCCCCCCCCccccc
Q 002380 814 PLMDDYSWLDGYQLPASTKGPGLGSSVNYL 843 (929)
Q Consensus 814 ~~~~d~~wl~~y~~~~~~~~~~~~~~~~~~ 843 (929)
=.||||.||+-+|.+=|......+..|||.
T Consensus 100 G~M~DyDWl~~~~~~wt~~S~h~~t~l~ya 129 (314)
T PRK10993 100 GHMVDYDWLDSSQPGWTDRSHHPDTDLNYA 129 (314)
T ss_pred CccccccccCCCCCCCcceecCCCCchhhh
Confidence 349999999999987777777778888877
No 62
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=31.16 E-value=92 Score=34.59 Aligned_cols=64 Identities=19% Similarity=0.113 Sum_probs=57.4
Q ss_pred ccHHHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhcCCCCChhHHHHHHHH
Q 002380 152 REYAAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAVDSPFSTARDNLIVA 215 (929)
Q Consensus 152 ~~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~~Pf~~A~~NL~~l 215 (929)
.+|+.|..-.++|..+.|..+++||=||+++-..++.-.|=.-|..++-...--+....||-..
T Consensus 114 g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms 177 (257)
T COG5010 114 GNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMS 177 (257)
T ss_pred cchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHH
Confidence 4678899999999999999999999999999999999999999999998877778888888543
No 63
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=30.69 E-value=51 Score=37.60 Aligned_cols=59 Identities=17% Similarity=0.160 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhcCCCCChhHHHHH
Q 002380 154 YAAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAVDSPFSTARDNL 212 (929)
Q Consensus 154 ~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~~Pf~~A~~NL 212 (929)
-++|.+.+..|+.+.|.+-...-..|.+.-..++.++|=|||+|+|...--...|--|-
T Consensus 132 ~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR 190 (472)
T KOG3824|consen 132 LEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNR 190 (472)
T ss_pred hHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhh
Confidence 36899999999999999999999999999888999999999999998876677766553
No 64
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=30.40 E-value=86 Score=28.37 Aligned_cols=49 Identities=18% Similarity=0.204 Sum_probs=37.8
Q ss_pred cHHHHHHHHHHHHhcCCCC---CCchhhhHHHHhccCCchhhHHHHHhhhcC
Q 002380 153 EYAAASSYYLQAASLWPSS---GNPHHQLAILASYSSDELVAVYRYFRSLAV 201 (929)
Q Consensus 153 ~~~~A~~yY~~A~~l~P~~---G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~ 201 (929)
+|..|..+|..++...|.. ...+..+|.+....++.-.|+-+|-+.+-.
T Consensus 54 ~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 54 KYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred cHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 5678999999999999875 456888888888777777777766655543
No 65
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=30.38 E-value=92 Score=40.88 Aligned_cols=66 Identities=18% Similarity=-0.031 Sum_probs=44.6
Q ss_pred cHHHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhcCCCCChhHHHHHHHHHHH
Q 002380 153 EYAAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAVDSPFSTARDNLIVAFEK 218 (929)
Q Consensus 153 ~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~~Pf~~A~~NL~~lf~k 218 (929)
+++.|..+|.+|+.+.|++...++.||.+....++.=+|+=+|-|++...--++.+..||-.++..
T Consensus 624 ~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~ 689 (987)
T PRK09782 624 NVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQR 689 (987)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 456677777777777777777777777766666666666666666665444466667777666654
No 66
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=29.69 E-value=77 Score=38.72 Aligned_cols=71 Identities=21% Similarity=0.273 Sum_probs=55.4
Q ss_pred cccHHHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhcC------CCC-ChhHHHHHHHHHHHHHh
Q 002380 151 SREYAAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAV------DSP-FSTARDNLIVAFEKNRQ 221 (929)
Q Consensus 151 ~~~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~------~~P-f~~A~~NL~~lf~k~r~ 221 (929)
..++..|..||.+|..+.|..--..|-|||++-.....-.|+=||-+.|.+ ..+ ...-..||-.++.|.++
T Consensus 393 t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~ 470 (611)
T KOG1173|consen 393 TNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNK 470 (611)
T ss_pred hccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhh
Confidence 456789999999999999999999999999999888888999999888822 223 23345677777777654
No 67
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=28.74 E-value=72 Score=38.78 Aligned_cols=48 Identities=17% Similarity=-0.020 Sum_probs=38.9
Q ss_pred ccHHHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhc
Q 002380 152 REYAAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLA 200 (929)
Q Consensus 152 ~~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~ 200 (929)
.+|+.|..+|.+|+.+.|+ -..|+-+|.++...|+.=+|+-+|.|++-
T Consensus 434 g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 434 GKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred CCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4577888888888888885 57888888888888888888888888763
No 68
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=27.75 E-value=42 Score=39.80 Aligned_cols=77 Identities=21% Similarity=0.273 Sum_probs=54.8
Q ss_pred CccccHHHHHHHHHHHHhcCCCCCC-----chhhhHHHHhccCCchhhHHHHHhhhcCCCCChhHHHHHHHHH------H
Q 002380 149 SKSREYAAASSYYLQAASLWPSSGN-----PHHQLAILASYSSDELVAVYRYFRSLAVDSPFSTARDNLIVAF------E 217 (929)
Q Consensus 149 ~~~~~~~~A~~yY~~A~~l~P~~G~-----pynQLAvLa~~~~~~l~AvY~Y~RSL~~~~Pf~~A~~NL~~lf------~ 217 (929)
.+.|+|.+|..||+.|++-.|+... ..|.+||-....+.+=+|+--|-.|+ ...|.-.|.-||.... +
T Consensus 248 ~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m-~~~pn~~a~~nl~i~~f~i~d~e 326 (840)
T KOG2003|consen 248 FKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCM-EEAPNFIAALNLIICAFAIGDAE 326 (840)
T ss_pred eehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHH-HhCccHHhhhhhhhhheecCcHH
Confidence 4678999999999999999999864 45677777777777777776665554 3456555666776543 5
Q ss_pred HHHhhhhhc
Q 002380 218 KNRQSYSQM 226 (929)
Q Consensus 218 k~r~~~~ql 226 (929)
|.++.+.++
T Consensus 327 kmkeaf~kl 335 (840)
T KOG2003|consen 327 KMKEAFQKL 335 (840)
T ss_pred HHHHHHHHH
Confidence 566666554
No 69
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=27.63 E-value=93 Score=34.92 Aligned_cols=49 Identities=20% Similarity=0.051 Sum_probs=43.3
Q ss_pred ccHHHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhc
Q 002380 152 REYAAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLA 200 (929)
Q Consensus 152 ~~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~ 200 (929)
.+++.|..+|.+|+.+.|.....+..||.++...++.-.|+-+|-+.+-
T Consensus 194 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 242 (389)
T PRK11788 194 GDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEE 242 (389)
T ss_pred CCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3578899999999999999999999999999988888888888888764
No 70
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=27.55 E-value=72 Score=23.70 Aligned_cols=34 Identities=24% Similarity=0.250 Sum_probs=21.2
Q ss_pred HHHhcchhhhhhhhcCCCCccccHHHHHHHHHHHHhc
Q 002380 131 LIYLGDLARYKGLYGEGDSKSREYAAASSYYLQAASL 167 (929)
Q Consensus 131 Li~LGDLaRYr~~~~~~~~~~~~~~~A~~yY~~A~~l 167 (929)
...||++..|..-. ....+|+.+|..||.+|...
T Consensus 4 ~~~lg~~~~~~~g~---~g~~~d~~~A~~~~~~Aa~~ 37 (39)
T PF08238_consen 4 QYNLGMYYMYYNGK---GGVPKDYEKAFKWYEKAAEQ 37 (39)
T ss_dssp HHHHHHHHHHHHTS---TSSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhhhcc---CCccccccchHHHHHHHHHc
Confidence 45567444343211 12345789999999999864
No 71
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=26.90 E-value=99 Score=40.60 Aligned_cols=66 Identities=17% Similarity=0.039 Sum_probs=50.4
Q ss_pred ccHHHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhcCCCCChhHHHHHHHHHHH
Q 002380 152 REYAAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAVDSPFSTARDNLIVAFEK 218 (929)
Q Consensus 152 ~~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~~Pf~~A~~NL~~lf~k 218 (929)
.++..|..+|.+|+.+.|+ ...|+.+|.+....++.=+|+=+|-+++...--.+.+..||-.++..
T Consensus 590 Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~ 655 (987)
T PRK09782 590 GQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWD 655 (987)
T ss_pred CCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 3567788888888888886 77888888888888888888888877777665577777777655554
No 72
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=26.79 E-value=1.4e+02 Score=39.66 Aligned_cols=65 Identities=17% Similarity=0.158 Sum_probs=48.5
Q ss_pred ccHHHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhcCCCCChhHHHHHHHHH
Q 002380 152 REYAAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAVDSPFSTARDNLIVAF 216 (929)
Q Consensus 152 ~~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~~Pf~~A~~NL~~lf 216 (929)
.+++.|+.+|.+|+.+.|.+...++.||.+....++.=+|+=+|-+.+....-...+..++-.++
T Consensus 617 g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~ 681 (1157)
T PRK11447 617 GDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAW 681 (1157)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence 46789999999999999999999999999998888888888877765543222344444443333
No 73
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=26.78 E-value=69 Score=25.35 Aligned_cols=29 Identities=17% Similarity=0.263 Sum_probs=20.9
Q ss_pred HHHHHhcchhhhhhhhcCCCCccccHHHHHHHHHHHHhc
Q 002380 129 RCLIYLGDLARYKGLYGEGDSKSREYAAASSYYLQAASL 167 (929)
Q Consensus 129 rCLi~LGDLaRYr~~~~~~~~~~~~~~~A~~yY~~A~~l 167 (929)
.|++.|||+++=.+ +|..|..=|.+|+.+
T Consensus 2 dv~~~Lgeisle~e----------~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENE----------NFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhc----------cHHHHHHHHHHHHHH
Confidence 48899999987654 456677777777654
No 74
>PLN02789 farnesyltranstransferase
Probab=26.41 E-value=1.1e+02 Score=34.90 Aligned_cols=65 Identities=11% Similarity=0.049 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHhcCCCCCCchhhhHHHHhccC------CchhhHHHHH-hhhcCCCCChhHHHHHHHHHHH
Q 002380 154 YAAASSYYLQAASLWPSSGNPHHQLAILASYSS------DELVAVYRYF-RSLAVDSPFSTARDNLIVAFEK 218 (929)
Q Consensus 154 ~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~------~~l~AvY~Y~-RSL~~~~Pf~~A~~NL~~lf~k 218 (929)
|..|..||.+++.+.|.+..++||.+.+....+ ..+++---|+ +++...--..+|+.++..+|..
T Consensus 158 ~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~ 229 (320)
T PLN02789 158 WEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKD 229 (320)
T ss_pred HHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhc
Confidence 667999999999999999999999998865321 1234444455 4444433378888888888765
No 75
>PRK15331 chaperone protein SicA; Provisional
Probab=26.27 E-value=81 Score=32.87 Aligned_cols=48 Identities=13% Similarity=0.023 Sum_probs=41.5
Q ss_pred ccHHHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhh
Q 002380 152 REYAAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSL 199 (929)
Q Consensus 152 ~~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL 199 (929)
.+|.+|...|..|..+.+..-+|+.+.|.....-++.-.|...|--++
T Consensus 85 k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~ 132 (165)
T PRK15331 85 KQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQCFELVN 132 (165)
T ss_pred HHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHHHHHHHH
Confidence 468899999999999999999999999999998888888887654433
No 76
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=26.14 E-value=51 Score=38.40 Aligned_cols=47 Identities=30% Similarity=0.378 Sum_probs=37.0
Q ss_pred HHHHHHHhcchhhhhhhhcCCCCccccHHHHHHHHHHHHhcCCCCCCchhhhHHHHh
Q 002380 127 CHRCLIYLGDLARYKGLYGEGDSKSREYAAASSYYLQAASLWPSSGNPHHQLAILAS 183 (929)
Q Consensus 127 chrCLi~LGDLaRYr~~~~~~~~~~~~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~ 183 (929)
--||+.|+|||.|-++.. +.|.+-|.+|..+.-..|.---|+-+|..
T Consensus 245 ~arc~~~~aDIyR~~gd~----------e~af~rYe~Am~~m~~~gdrmgqv~al~g 291 (518)
T KOG1941|consen 245 QARCLLCFADIYRSRGDL----------ERAFRRYEQAMGTMASLGDRMGQVEALDG 291 (518)
T ss_pred HHHHHHHHHHHHHhcccH----------hHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 468999999998888644 46889999999988888876666555544
No 77
>PRK12580 outer membrane protease; Reviewed
Probab=26.13 E-value=41 Score=38.14 Aligned_cols=33 Identities=24% Similarity=0.395 Sum_probs=26.4
Q ss_pred CCCCcccccccCCCCCCCCCCCCCCCccccccc
Q 002380 813 NPLMDDYSWLDGYQLPASTKGPGLGSSVNYLSH 845 (929)
Q Consensus 813 ~~~~~d~~wl~~y~~~~~~~~~~~~~~~~~~~~ 845 (929)
+-.||||.||+-.|.-=+....-.+..|||.+.
T Consensus 99 ~g~M~DyDW~~~~~~~WTd~S~hp~T~Lnyane 131 (312)
T PRK12580 99 SGNMDDYDWMNENQSEWTDHSSHPATNVNHANE 131 (312)
T ss_pred CcccccccccCCCCCCCcccccCCCCcccchhh
Confidence 445999999999998777777777778888754
No 78
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=25.74 E-value=97 Score=21.85 Aligned_cols=19 Identities=26% Similarity=0.599 Sum_probs=16.7
Q ss_pred cHHHHHHHHHHHHhcCCCC
Q 002380 153 EYAAASSYYLQAASLWPSS 171 (929)
Q Consensus 153 ~~~~A~~yY~~A~~l~P~~ 171 (929)
+|..|..+|.+.+...|++
T Consensus 15 ~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 15 DYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHHHCcCC
Confidence 5678999999999999975
No 79
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=25.42 E-value=81 Score=34.87 Aligned_cols=75 Identities=19% Similarity=0.177 Sum_probs=49.7
Q ss_pred HHHHHHHHhcchhhhhhhhcCCCCccccHHHHHHHHHHHHhcCCCCCCchhhhHHHHhcc----C-------------Cc
Q 002380 126 SCHRCLIYLGDLARYKGLYGEGDSKSREYAAASSYYLQAASLWPSSGNPHHQLAILASYS----S-------------DE 188 (929)
Q Consensus 126 schrCLi~LGDLaRYr~~~~~~~~~~~~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~----~-------------~~ 188 (929)
.+-+|+..+|....-. . .......+..+..+|..|+.+.|..+++|+++|...... . ..
T Consensus 250 ~~a~~~l~~a~w~~~~---~-~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (352)
T PF02259_consen 250 LKAKAFLLLAKWLDEL---Y-SKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYL 325 (352)
T ss_pred HHHHHHHHHHHHHHhh---c-cccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHH
Confidence 3446766666543222 1 112234567899999999999999999999999876432 0 11
Q ss_pred hhhHHHHHhhhcCCCC
Q 002380 189 LVAVYRYFRSLAVDSP 204 (929)
Q Consensus 189 l~AvY~Y~RSL~~~~P 204 (929)
..||-+|+||+....-
T Consensus 326 ~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 326 EQAIEGYLKALSLGSK 341 (352)
T ss_pred HHHHHHHHHHHhhCCC
Confidence 4588888888865433
No 80
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=25.27 E-value=1.1e+02 Score=38.34 Aligned_cols=96 Identities=19% Similarity=0.231 Sum_probs=74.3
Q ss_pred HHHHHHHhcchhhhhhhhcCC------------------CCccccHHHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCc
Q 002380 127 CHRCLIYLGDLARYKGLYGEG------------------DSKSREYAAASSYYLQAASLWPSSGNPHHQLAILASYSSDE 188 (929)
Q Consensus 127 chrCLi~LGDLaRYr~~~~~~------------------~~~~~~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~ 188 (929)
-|+-+..|||.-+=.+.++.. -....+|+.|.+....++.+.|-.=..|.=+|-+|..-.+.
T Consensus 456 d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~ 535 (777)
T KOG1128|consen 456 DPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKE 535 (777)
T ss_pred cchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhh
Confidence 355566777765544444321 01246799999999999999999988888899999888888
Q ss_pred hhhHHHHHhhhcCCCCChhHHHHHHHHHHHHHhh
Q 002380 189 LVAVYRYFRSLAVDSPFSTARDNLIVAFEKNRQS 222 (929)
Q Consensus 189 l~AvY~Y~RSL~~~~Pf~~A~~NL~~lf~k~r~~ 222 (929)
=.|+=+|.|++.-.--...|+.||...+-+..++
T Consensus 536 q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k 569 (777)
T KOG1128|consen 536 QAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKK 569 (777)
T ss_pred HHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhh
Confidence 8899999999877777899999998887776654
No 81
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=25.09 E-value=1.4e+02 Score=36.54 Aligned_cols=67 Identities=16% Similarity=0.024 Sum_probs=50.3
Q ss_pred ccHHHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhcCCCCChhHHHHHHHHHHH
Q 002380 152 REYAAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAVDSPFSTARDNLIVAFEK 218 (929)
Q Consensus 152 ~~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~~Pf~~A~~NL~~lf~k 218 (929)
.++..|..+|.+++...|..-..++.+|.++...++.-.|+-+|-+.+-....++.+..+|..++.+
T Consensus 750 g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 816 (899)
T TIGR02917 750 GNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLE 816 (899)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 3466788888888888888888888888888878888888888877776655567777777665554
No 82
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=24.50 E-value=86 Score=36.34 Aligned_cols=47 Identities=19% Similarity=-0.007 Sum_probs=30.9
Q ss_pred ccHHHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhh
Q 002380 152 REYAAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSL 199 (929)
Q Consensus 152 ~~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL 199 (929)
.+|++|+.||.+++.+.|+. ..|.-||.+....++.=.|.=+|-++|
T Consensus 342 ~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 342 GEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred CCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35677777777777777764 335566666666666666666666664
No 83
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=22.81 E-value=1.1e+02 Score=37.26 Aligned_cols=61 Identities=23% Similarity=0.169 Sum_probs=48.0
Q ss_pred HhcchhhhhhhhcCCCCccccHHHHHHHHHHHHhc--------CCCCCCchhhhHHHHhccCCchhhHHHHHhhhc
Q 002380 133 YLGDLARYKGLYGEGDSKSREYAAASSYYLQAASL--------WPSSGNPHHQLAILASYSSDELVAVYRYFRSLA 200 (929)
Q Consensus 133 ~LGDLaRYr~~~~~~~~~~~~~~~A~~yY~~A~~l--------~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~ 200 (929)
++.++|.|.... ..|..|...|..|+.+ .|..+.+++-||+++...++.=+|--||-|++.
T Consensus 243 ~l~~~a~~y~~~-------~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~ 311 (508)
T KOG1840|consen 243 MLNILALVYRSL-------GKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALE 311 (508)
T ss_pred HHHHHHHHHHHh-------ccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHH
Confidence 355666666543 3577899999999965 688899999999999888888888888888774
No 84
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.14 E-value=1.7e+03 Score=29.76 Aligned_cols=21 Identities=14% Similarity=0.151 Sum_probs=15.8
Q ss_pred hhhhhhHHHHHHHHHHHHhcc
Q 002380 508 NKERKDRVKRIFAAGKALANV 528 (929)
Q Consensus 508 ~s~~~~R~~RIL~lG~~LA~~ 528 (929)
......+++.++-++.+++.+
T Consensus 634 ~~~y~~~~e~l~~~~~~l~~~ 654 (1049)
T KOG0307|consen 634 PTSYQDLAEDLMELTLKLAQF 654 (1049)
T ss_pred hHHHHHHHHHHHHHHhhhhhc
Confidence 566677788888888888764
No 85
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=21.02 E-value=1.4e+02 Score=33.96 Aligned_cols=63 Identities=22% Similarity=0.188 Sum_probs=41.5
Q ss_pred cHHHHHHHHHHHHhcCCCCCCchhhhHHHHhccCCchhhHHHHHhhhcCCCCChhHHHHHHHH
Q 002380 153 EYAAASSYYLQAASLWPSSGNPHHQLAILASYSSDELVAVYRYFRSLAVDSPFSTARDNLIVA 215 (929)
Q Consensus 153 ~~~~A~~yY~~A~~l~P~~G~pynQLAvLa~~~~~~l~AvY~Y~RSL~~~~Pf~~A~~NL~~l 215 (929)
+|..|..=...|+.+.|..-+.|--||+.....+++-.|+=.|-|+|-..--.+..+.||...
T Consensus 130 ~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~A 192 (304)
T KOG0553|consen 130 EYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIA 192 (304)
T ss_pred chHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHH
Confidence 345566666667777777777777777777777777777777777776554455555555443
Done!