BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002384
(929 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ASK|A Chain A, Structure Of Uhrf1 In Complex With Histone Tail
pdb|3ASK|B Chain B, Structure Of Uhrf1 In Complex With Histone Tail
pdb|3ASK|C Chain C, Structure Of Uhrf1 In Complex With Histone Tail
pdb|3ASK|D Chain D, Structure Of Uhrf1 In Complex With Histone Tail
Length = 226
Score = 43.1 bits (100), Expect = 7e-04, Method: Composition-based stats.
Identities = 22/52 (42%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 527 CAKCGSKDLSADNDIILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGC 578
C CG + + ++CD CD FH YCL+PPL +P +DE W CP C
Sbjct: 177 CHLCGGR--QDPDKQLMCD-ECDMAFHIYCLDPPL--SSVPSEDE-WYCPEC 222
>pdb|3ZVZ|B Chain B, Phd Finger Of Human Uhrf1
Length = 57
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 23/52 (44%), Positives = 27/52 (51%), Gaps = 6/52 (11%)
Query: 527 CAKCGSKDLSADNDIILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGC 578
C CG + D D L CD FH YCL+PPL +P +DE W CP C
Sbjct: 8 CHLCGGRQ---DPDKQLMCDECDMAFHIYCLDPPL--SSVPSEDE-WYCPEC 53
>pdb|4GY5|A Chain A, Crystal Structure Of The Tandem Tudor Domain And Plant
Homeodomain Of Uhrf1 With Histone H3k9me3
pdb|4GY5|B Chain B, Crystal Structure Of The Tandem Tudor Domain And Plant
Homeodomain Of Uhrf1 With Histone H3k9me3
pdb|4GY5|C Chain C, Crystal Structure Of The Tandem Tudor Domain And Plant
Homeodomain Of Uhrf1 With Histone H3k9me3
pdb|4GY5|D Chain D, Crystal Structure Of The Tandem Tudor Domain And Plant
Homeodomain Of Uhrf1 With Histone H3k9me3
Length = 241
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 24/37 (64%), Gaps = 4/37 (10%)
Query: 542 ILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGC 578
++CD CD FH YCL+PPL +P +DE W CP C
Sbjct: 206 LMCD-ECDMAFHIYCLDPPL--SSVPSEDE-WYCPEC 238
>pdb|1F62|A Chain A, Wstf-Phd
Length = 51
Score = 39.3 bits (90), Expect = 0.009, Method: Composition-based stats.
Identities = 22/52 (42%), Positives = 28/52 (53%), Gaps = 7/52 (13%)
Query: 527 CAKCGSKDLSADNDIILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGC 578
C C K D+ +ILCD C++ FH +CL P L + PD E W CP C
Sbjct: 3 CKVCRKK--GEDDKLILCD-ECNKAFHLFCLRPALYE---VPDGE-WQCPAC 47
>pdb|2KWJ|A Chain A, Solution Structures Of The Double Phd Fingers Of Human
Transcriptional Protein Dpf3 Bound To A Histone Peptide
Containing Acetylation At Lysine 14
pdb|2KWK|A Chain A, Solution Structures Of The Double Phd Fingers Of Human
Transcriptional Protein Dpf3b Bound To A H3 Peptide Wild
Type
pdb|2KWN|A Chain A, Solution Structure Of The Double Phd (Plant Homeodomain)
Fingers Of Human Transcriptional Protein Dpf3b Bound To
A Histone H4 Peptide Containing Acetylation At Lysine 16
pdb|2KWO|A Chain A, Solution Structure Of The Double Phd (Plant Homeodomain)
Fingers Of Human Transcriptional Protein Dpf3b Bound To
A Histone H4 Peptide Containing N-Terminal Acetylation
At Serine 1
Length = 114
Score = 37.7 bits (86), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 7/52 (13%)
Query: 527 CAKCGSKDLSADNDIILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGC 578
C CG+ + D+ ++ CD CDRG+H YCL PP+ + P + W C C
Sbjct: 61 CILCGTSE--NDDQLLFCDD-CDRGYHMYCLNPPVAE----PPEGSWSCHLC 105
>pdb|3ZVY|A Chain A, Phd Finger Of Human Uhrf1 In Complex With Unmodified
Histone H3 N-Terminal Tail
pdb|3ZVY|B Chain B, Phd Finger Of Human Uhrf1 In Complex With Unmodified
Histone H3 N-Terminal Tail
Length = 72
Score = 37.4 bits (85), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 24/37 (64%), Gaps = 4/37 (10%)
Query: 542 ILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGC 578
++CD CD FH YCL+PPL +P +DE W CP C
Sbjct: 36 LMCD-ECDMAFHIYCLDPPL--SSVPSEDE-WYCPEC 68
>pdb|2E6S|A Chain A, Solution Structure Of The Phd Domain In Ring Finger
Protein 107
Length = 77
Score = 37.4 bits (85), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 28/52 (53%), Gaps = 6/52 (11%)
Query: 527 CAKCGSKDLSADNDIILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGC 578
C CG K N +LCD C+ +H YCL PPL D P++E W CP C
Sbjct: 29 CRVCGGK--HEPNMQLLCD-ECNVAYHIYCLNPPL---DKVPEEEYWYCPSC 74
>pdb|3SOU|A Chain A, Structure Of Uhrf1 Phd Finger In Complex With Histone H3
1-9 Peptide
pdb|3SOU|B Chain B, Structure Of Uhrf1 Phd Finger In Complex With Histone H3
1-9 Peptide
pdb|3SOW|A Chain A, Structure Of Uhrf1 Phd Finger In Complex With Histone
H3k4me3 1-9 Peptide
pdb|3SOW|B Chain B, Structure Of Uhrf1 Phd Finger In Complex With Histone
H3k4me3 1-9 Peptide
pdb|3SOX|A Chain A, Structure Of Uhrf1 Phd Finger In The Free Form
pdb|3SOX|B Chain B, Structure Of Uhrf1 Phd Finger In The Free Form
pdb|3ASL|A Chain A, Structure Of Uhrf1 In Complex With Histone Tail
Length = 70
Score = 37.4 bits (85), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 24/37 (64%), Gaps = 4/37 (10%)
Query: 542 ILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGC 578
++CD CD FH YCL+PPL +P +DE W CP C
Sbjct: 34 LMCD-ECDMAFHIYCLDPPL--SSVPSEDE-WYCPEC 66
>pdb|2LGG|A Chain A, Structure Of Phd Domain Of Uhrf1 In Complex With H3
Peptide
pdb|2LGK|A Chain A, Nmr Structure Of Uhrf1 Phd Domains In A Complex With
Histone H3 Peptide
pdb|2LGL|A Chain A, Nmr Structure Of The Uhrf1 Phd Domain
Length = 69
Score = 37.0 bits (84), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 24/37 (64%), Gaps = 4/37 (10%)
Query: 542 ILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGC 578
++CD CD FH YCL+PPL +P +DE W CP C
Sbjct: 34 LMCD-ECDMAFHIYCLDPPL--SSVPSEDE-WYCPEC 66
>pdb|3T6R|A Chain A, Structure Of Uhrf1 In Complex With Unmodified H3
N-Terminal Tail
pdb|3T6R|B Chain B, Structure Of Uhrf1 In Complex With Unmodified H3
N-Terminal Tail
Length = 72
Score = 37.0 bits (84), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 24/37 (64%), Gaps = 4/37 (10%)
Query: 542 ILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGC 578
++CD CD FH YCL+PPL +P +DE W CP C
Sbjct: 39 LMCD-ECDMAFHIYCLDPPL--SSVPSEDE-WYCPEC 71
>pdb|3SHB|A Chain A, Crystal Structure Of Phd Domain Of Uhrf1
Length = 77
Score = 36.6 bits (83), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 24/37 (64%), Gaps = 4/37 (10%)
Query: 542 ILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGC 578
++CD CD FH YCL+PPL +P +DE W CP C
Sbjct: 42 LMCD-ECDMAFHIYCLDPPL--SSVPSEDE-WYCPEC 74
>pdb|2YT5|A Chain A, Solution Structure Of The Phd Domain Of Metal-Response
Element-Binding Transcription Factor 2
Length = 66
Score = 36.2 bits (82), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 527 CAKCGSKDLSADNDIILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGC 578
C C + A N++++CD C +G+HQ C P + + DE WLC C
Sbjct: 9 CTICQEEYSEAPNEMVICD-KCGQGYHQLC-HTPHIDSSVIDSDEKWLCRQC 58
>pdb|3V43|A Chain A, Crystal Structure Of Moz
Length = 112
Score = 36.2 bits (82), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 25/37 (67%), Gaps = 2/37 (5%)
Query: 527 CAKCGSKDLSADNDIILCDGACDRGFHQYCLEPPLLK 563
C+ C + +ADN ++ CD +CDRGFH C +PPL +
Sbjct: 64 CSSCRDQGKNADN-MLFCD-SCDRGFHMECCDPPLTR 98
>pdb|2LN0|A Chain A, Structure Of Moz
Length = 110
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 25/37 (67%), Gaps = 2/37 (5%)
Query: 527 CAKCGSKDLSADNDIILCDGACDRGFHQYCLEPPLLK 563
C+ C + +ADN ++ CD +CDRGFH C +PPL +
Sbjct: 62 CSSCRDQGKNADN-MLFCD-SCDRGFHMECCDPPLTR 96
>pdb|2YSM|A Chain A, Solution Structure Of The First And Second Phd Domain From
MyeloidLYMPHOID OR MIXED-Lineage Leukemia Protein 3
Homolog
Length = 111
Score = 34.3 bits (77), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 27/41 (65%), Gaps = 5/41 (12%)
Query: 538 DNDIILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGC 578
D+ +++CD CD+G+H +CL+P + + +P + GW C C
Sbjct: 66 DSKMLVCD-TCDKGYHTFCLQP--VMKSVPTN--GWKCKNC 101
>pdb|2PUY|A Chain A, Crystal Structure Of The Bhc80 Phd Finger
pdb|2PUY|B Chain B, Crystal Structure Of The Bhc80 Phd Finger
Length = 60
Score = 33.5 bits (75), Expect = 0.60, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 10/53 (18%)
Query: 526 YCAKCGSKDLSADNDIILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGC 578
+C+ C +++CD C R +H CL+PPL + IP W+CP C
Sbjct: 7 FCSVC-----RKSGQLLMCD-TCSRVYHLDCLDPPL--KTIPKG--MWICPRC 49
>pdb|2E6R|A Chain A, Solution Structure Of The Phd Domain In Smcy Protein
Length = 92
Score = 32.7 bits (73), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 5/41 (12%)
Query: 538 DNDIILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGC 578
D+ ++ CDG CD +H +CL PPL +IP W CP C
Sbjct: 28 DDKLLFCDG-CDDNYHIFCLLPPL--PEIP--RGIWRCPKC 63
>pdb|1XWH|A Chain A, Nmr Structure Of The First Phd Finger Of Autoimmune
Regulator Protein (Aire1): Insights Into Apeced
pdb|2KE1|A Chain A, Molecular Basis Of Non-Modified Histone H3 Tail
Recognition By The First Phd Finger Of Autoimmune
Regulator
Length = 66
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Query: 539 NDIILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGC 578
++I CDG C R FH CL PPL +IP W C C
Sbjct: 18 GELICCDG-CPRAFHLACLSPPL--REIPSGT--WRCSSC 52
>pdb|2VPD|A Chain A, Decoding Of Methylated Histone H3 Tail By The Pygo-Bcl9
Wnt Signaling Complex
pdb|2VPD|C Chain C, Decoding Of Methylated Histone H3 Tail By The Pygo-Bcl9
Wnt Signaling Complex
Length = 67
Score = 32.3 bits (72), Expect = 1.3, Method: Composition-based stats.
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 518 GQIDSEDIYCAKCGSKDLSADNDIILCDGACDRGFHQYC 556
G S+ +Y + +++ D D ILC+ +C + FH+ C
Sbjct: 2 GHSSSDPVYPCGICTNEVNDDQDAILCEASCQKWFHRIC 40
>pdb|2VPB|A Chain A, Decoding Of Methylated Histone H3 Tail By The Pygo-Bcl9
Wnt Signaling Complex
Length = 65
Score = 32.3 bits (72), Expect = 1.3, Method: Composition-based stats.
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 518 GQIDSEDIYCAKCGSKDLSADNDIILCDGACDRGFHQYC 556
G S+ +Y + +++ D D ILC+ +C + FH+ C
Sbjct: 1 GHSSSDPVYPCGICTNEVNDDQDAILCEASCQKWFHRIC 39
>pdb|2DX8|A Chain A, Crystal Structure Analysis Of The Phd Domain Of The
Transcription Coactivator Pygophus
pdb|2DX8|B Chain B, Crystal Structure Analysis Of The Phd Domain Of The
Transcription Coactivator Pygophus
Length = 67
Score = 32.3 bits (72), Expect = 1.4, Method: Composition-based stats.
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 518 GQIDSEDIYCAKCGSKDLSADNDIILCDGACDRGFHQYC 556
G S+ +Y + +++ D D ILC+ +C + FH+ C
Sbjct: 2 GHSSSDPVYPCGICTNEVNDDQDAILCEASCQKWFHRIC 40
>pdb|1QU2|A Chain A, Insights Into Editing From An Ile-Trna Synthetase
Structure With Trna(Ile) And Mupirocin
pdb|1QU3|A Chain A, Insights Into Editing From An Ile-Trna Synthetase
Structure With Trna(Ile) And Mupirocin
pdb|1FFY|A Chain A, Insights Into Editing From An Ile-Trna Synthetase
Structure With Trna(Ile) And Mupirocin
Length = 917
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 49/107 (45%), Gaps = 17/107 (15%)
Query: 347 SCLEQSETPPNYVANNSACLGRKGKRATKSLKNNYTVRSLIGSDRVLRSRSGERP-IPPE 405
S + +P ++ ++ + +GK+ +KSL N +I D+V++ + + +
Sbjct: 570 SVATRGVSPYKFLLSHGFVMDGEGKKMSKSLGN------VIVPDQVVKQKGADIARLWVS 623
Query: 406 SSINLADVNSIGEXXXXXXXXXXXXXIVADEYSRIRTHLRYLLNRIN 452
S+ LADV E +D+Y +IR LR++L IN
Sbjct: 624 STDYLADVRISDEILKQ----------TSDDYRKIRNTLRFMLGNIN 660
>pdb|2VP7|A Chain A, Decoding Of Methylated Histone H3 Tail By The Pygo-Bcl9
Wnt Signaling Complex
Length = 71
Score = 32.0 bits (71), Expect = 1.8, Method: Composition-based stats.
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 518 GQIDSEDIYCAKCGSKDLSADNDIILCDGACDRGFHQYC 556
G S+ +Y + +++ D D ILC+ +C + FH+ C
Sbjct: 2 GHSSSDPVYPCGICTNEVNDDQDAILCEASCQKFFHRIC 40
>pdb|1MM2|A Chain A, Solution Structure Of The 2nd Phd Domain From Mi2b
pdb|2L75|A Chain A, Solution Structure Of Chd4-Phd2 In Complex With H3k9me3
Length = 61
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
Query: 535 LSADNDIILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGCDC 580
+ D +LC C +H +CL PPL +IP + WLCP C C
Sbjct: 14 VCKDGGELLCCDTCPSSYHIHCLNPPL--PEIP--NGEWLCPRCTC 55
>pdb|2XB1|A Chain A, Crystal Structure Of The Human Pygo2 Phd Finger In Complex
With The B9l Hd1 Domain
pdb|2XB1|C Chain C, Crystal Structure Of The Human Pygo2 Phd Finger In Complex
With The B9l Hd1 Domain
Length = 105
Score = 31.6 bits (70), Expect = 1.9, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 527 CAKCGSKDLSADNDIILCDGACDRGFHQYC 556
C C S +++ D D ILC+ +C + FH+ C
Sbjct: 6 CGACRS-EVNDDQDAILCEASCQKWFHREC 34
>pdb|2KFT|A Chain A, Nmr Solution Structure Of The First Phd Finger Domain Of
Human Autoimmune Regulator (Aire) In Complex With
Histone H3(1-20cys) Peptide
Length = 56
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Query: 539 NDIILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGC 578
++I CDG C R FH CL PPL +IP W C C
Sbjct: 15 GELICCDG-CPRAFHLACLSPPL--REIPSGT--WRCSSC 49
>pdb|2KU3|A Chain A, Solution Structure Of Brd1 Phd1 Finger
Length = 71
Score = 31.6 bits (70), Expect = 2.1, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 23/56 (41%), Gaps = 7/56 (12%)
Query: 523 EDIYCAKCGSKDLSADNDIILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGC 578
ED C+ C + N I+ CD C+ HQ C P + E WLC C
Sbjct: 15 EDAVCSICMDGESQNSNVILFCD-MCNLAVHQECYGVPYIPEG------QWLCRHC 63
>pdb|2VPE|A Chain A, Decoding Of Methylated Histone H3 Tail By The Pygo-bcl9
Wnt Signaling Complex
pdb|2VPE|C Chain C, Decoding Of Methylated Histone H3 Tail By The Pygo-bcl9
Wnt Signaling Complex
pdb|2VPG|A Chain A, Decoding Of Methylated Histone H3 Tail By The Pygo-Bcl9
Wnt Signaling Complex
pdb|2VPG|C Chain C, Decoding Of Methylated Histone H3 Tail By The Pygo-Bcl9
Wnt Signaling Complex
Length = 63
Score = 31.2 bits (69), Expect = 2.6, Method: Composition-based stats.
Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 527 CAKCGSKDLSADNDIILCDGACDRGFHQYC 556
C C + +++ D D ILC+ +C + FH+ C
Sbjct: 8 CGIC-TNEVNDDQDAILCEASCQKWFHRIC 36
>pdb|2KGG|A Chain A, Solution Structure Of Jarid1a C-Terminal Phd Finger
pdb|2KGI|A Chain A, Solution Structure Of Jarid1a C-Terminal Phd Finger In
Complex With H3(1-9)k4me3
pdb|3GL6|A Chain A, Crystal Structure Of Jarid1a-Phd3 Complexed With H3(1-9)
K4me3 Peptide
Length = 52
Score = 30.0 bits (66), Expect = 6.3, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 6/40 (15%)
Query: 540 DIILCDGACDRGFHQYCLE-PPLLKEDIPPDDEGWLCPGC 578
D + CDG CD FHQ C+ P + E +E ++C C
Sbjct: 17 DWVQCDGGCDEWFHQVCVGVSPEMAE-----NEDYICINC 51
>pdb|2YQL|A Chain A, Solution Structure Of The Phd Domain In Phd Finger Protein
21a
Length = 56
Score = 30.0 bits (66), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 5/38 (13%)
Query: 541 IILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGC 578
+++CD C R +H CL+PPL + IP W+CP C
Sbjct: 21 LLMCD-TCSRVYHLDCLDPPL--KTIP--KGMWICPRC 53
>pdb|2L5U|A Chain A, Structure Of The First Phd Finger (Phd1) From Chd4 (Mi2b)
Length = 61
Score = 30.0 bits (66), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 7/42 (16%)
Query: 539 NDIILCDGACDRGFHQYCLEPPLLKEDIPPDDEG-WLCPGCD 579
+IILCD C R +H CL+P D+ EG W CP C+
Sbjct: 21 GEIILCD-TCPRAYHMVCLDP-----DMEKAPEGKWSCPHCE 56
>pdb|1SDM|A Chain A, Crystal Structure Of Kinesin-Like Calmodulin Binding
Protein
pdb|3CNZ|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3CNZ|B Chain B, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|C Chain C, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
Length = 369
Score = 30.0 bits (66), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
Query: 108 QNTSEQKHGTELMHNEQSEQKHQLCYQIVFDKPQATSLVDNATLQPV----SKDVSKSSQ 163
Q SEQ+H T + NEQS + H + I+ T + L V S+ V KS
Sbjct: 186 QRGSEQRHTTGTLMNEQSSRSHLIVSVIIESTNLQTQAIARGKLSFVDLAGSERVKKSGS 245
Query: 164 TGNR 167
GN+
Sbjct: 246 AGNQ 249
>pdb|1KD7|A Chain A, Crystal Structure Of An Extracellular Domain Fragment Of
Human Baff
pdb|1KD7|B Chain B, Crystal Structure Of An Extracellular Domain Fragment Of
Human Baff
pdb|1KD7|C Chain C, Crystal Structure Of An Extracellular Domain Fragment Of
Human Baff
pdb|1KD7|K Chain K, Crystal Structure Of An Extracellular Domain Fragment Of
Human Baff
pdb|1KD7|L Chain L, Crystal Structure Of An Extracellular Domain Fragment Of
Human Baff
pdb|1KD7|M Chain M, Crystal Structure Of An Extracellular Domain Fragment Of
Human Baff
Length = 164
Score = 30.0 bits (66), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Query: 244 DANKSCQAGEIS----CLQQSSSEQTPEFTPGISSHEPSVVNYKLGSQLEQTE 292
D NK Q E + CLQ + +TP G + P ++++K GS LE+ E
Sbjct: 9 DLNKELQGPEETVTQDCLQLIADSETPTIQKGSYTFVPWLLSFKRGSALEEKE 61
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.310 0.128 0.371
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,822,929
Number of Sequences: 62578
Number of extensions: 1002394
Number of successful extensions: 1532
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 1496
Number of HSP's gapped (non-prelim): 43
length of query: 929
length of database: 14,973,337
effective HSP length: 108
effective length of query: 821
effective length of database: 8,214,913
effective search space: 6744443573
effective search space used: 6744443573
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 56 (26.2 bits)