Query 002384
Match_columns 929
No_of_seqs 252 out of 1205
Neff 3.1
Searched_HMMs 46136
Date Thu Mar 28 22:49:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002384.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002384hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4299 PHD Zn-finger protein 99.9 5.4E-27 1.2E-31 263.8 13.7 348 433-806 150-539 (613)
2 PF00628 PHD: PHD-finger; Int 98.5 7.5E-09 1.6E-13 82.8 -1.4 51 526-581 1-51 (51)
3 KOG1244 Predicted transcriptio 98.5 2.8E-08 6E-13 105.7 1.9 52 521-579 278-329 (336)
4 KOG0825 PHD Zn-finger protein 98.4 6.2E-08 1.4E-12 113.2 1.8 51 523-580 214-265 (1134)
5 KOG1245 Chromatin remodeling c 98.3 3.1E-07 6.7E-12 114.5 3.5 87 480-583 1073-1160(1404)
6 KOG0955 PHD finger protein BR1 98.2 6.9E-07 1.5E-11 108.5 3.5 54 522-582 217-270 (1051)
7 smart00249 PHD PHD zinc finger 98.1 2.5E-06 5.4E-11 64.9 3.4 47 526-578 1-47 (47)
8 COG5141 PHD zinc finger-contai 98.0 8.9E-06 1.9E-10 92.3 6.1 52 522-580 191-242 (669)
9 KOG0954 PHD finger protein [Ge 97.9 3.1E-06 6.8E-11 99.1 1.5 53 520-579 267-319 (893)
10 KOG4323 Polycomb-like PHD Zn-f 97.9 3.6E-06 7.7E-11 95.3 1.6 59 526-585 170-228 (464)
11 cd04718 BAH_plant_2 BAH, or Br 97.7 1.7E-05 3.6E-10 78.8 2.6 33 551-587 1-33 (148)
12 KOG0956 PHD finger protein AF1 97.7 1.6E-05 3.5E-10 92.8 1.8 49 526-580 7-56 (900)
13 KOG4443 Putative transcription 97.5 3.6E-05 7.7E-10 89.8 1.8 64 517-587 61-124 (694)
14 KOG1512 PHD Zn-finger protein 97.5 3.9E-05 8.4E-10 82.9 1.8 49 521-578 311-360 (381)
15 KOG0383 Predicted helicase [Ge 97.5 3.7E-05 8E-10 91.0 1.3 54 520-583 43-96 (696)
16 KOG1973 Chromatin remodeling p 97.4 6E-05 1.3E-09 80.4 1.5 38 539-582 230-269 (274)
17 COG5034 TNG2 Chromatin remodel 97.4 8.5E-05 1.8E-09 79.2 2.6 56 515-580 212-269 (271)
18 KOG0957 PHD finger protein [Ge 97.0 0.00032 7E-09 80.2 1.9 60 524-589 544-605 (707)
19 PF13831 PHD_2: PHD-finger; PD 95.8 0.0015 3.2E-08 51.3 -1.4 35 539-579 2-36 (36)
20 KOG0957 PHD finger protein [Ge 94.3 0.024 5.3E-07 65.6 2.4 55 525-581 120-179 (707)
21 KOG1473 Nucleosome remodeling 93.9 0.054 1.2E-06 67.3 4.4 55 515-580 336-390 (1414)
22 PF15446 zf-PHD-like: PHD/FYVE 92.5 0.052 1.1E-06 55.7 1.2 55 526-581 1-60 (175)
23 KOG1832 HIV-1 Vpr-binding prot 89.2 0.85 1.8E-05 56.5 7.0 63 219-281 856-926 (1516)
24 PF04931 DNA_pol_phi: DNA poly 87.2 0.39 8.5E-06 58.2 2.7 8 675-682 711-718 (784)
25 KOG4628 Predicted E3 ubiquitin 86.8 0.92 2E-05 51.2 5.2 44 525-578 230-273 (348)
26 KOG4443 Putative transcription 86.6 0.18 3.9E-06 60.2 -0.5 57 522-582 16-72 (694)
27 KOG1246 DNA-binding protein ju 86.0 0.58 1.3E-05 57.7 3.3 49 525-581 156-204 (904)
28 COG4547 CobT Cobalamin biosynt 85.3 1.3 2.8E-05 51.8 5.4 96 622-722 230-338 (620)
29 PF14446 Prok-RING_1: Prokaryo 80.6 0.94 2E-05 39.2 1.5 34 524-559 5-38 (54)
30 KOG1832 HIV-1 Vpr-binding prot 79.5 2.5 5.4E-05 52.7 5.1 18 684-701 1460-1477(1516)
31 KOG4299 PHD Zn-finger protein 74.4 2.1 4.6E-05 51.3 2.6 48 525-581 48-95 (613)
32 PF10446 DUF2457: Protein of u 69.2 3.3 7.2E-05 48.2 2.6 8 552-559 2-9 (458)
33 KOG4323 Polycomb-like PHD Zn-f 66.6 4 8.6E-05 47.8 2.6 55 522-583 81-135 (464)
34 KOG1189 Global transcriptional 65.4 5.8 0.00013 48.9 3.7 14 598-611 844-857 (960)
35 KOG1473 Nucleosome remodeling 65.1 0.92 2E-05 57.2 -2.9 54 525-585 429-483 (1414)
36 KOG3612 PHD Zn-finger protein 60.0 7.2 0.00016 46.6 3.1 65 522-596 58-122 (588)
37 KOG0383 Predicted helicase [Ge 58.3 1.5 3.2E-05 53.4 -2.8 49 523-581 505-554 (696)
38 PF10367 Vps39_2: Vacuolar sor 48.4 13 0.00028 33.4 2.1 31 524-558 78-108 (109)
39 PF13901 DUF4206: Domain of un 45.5 17 0.00038 37.8 2.9 43 525-581 153-198 (202)
40 KOG1080 Histone H3 (Lys4) meth 43.7 20 0.00042 45.8 3.4 56 525-586 574-632 (1005)
41 PF13832 zf-HC5HC2H_2: PHD-zin 41.6 13 0.00028 34.4 1.1 30 525-559 56-87 (110)
42 PF04147 Nop14: Nop14-like fam 41.5 61 0.0013 40.6 7.1 13 712-724 426-438 (840)
43 KOG1829 Uncharacterized conser 40.1 32 0.0007 41.6 4.3 46 525-582 512-560 (580)
44 PF12861 zf-Apc11: Anaphase-pr 39.4 12 0.00026 35.2 0.6 35 540-581 46-80 (85)
45 PF06524 NOA36: NOA36 protein; 38.8 73 0.0016 35.7 6.3 9 572-580 209-217 (314)
46 PF10446 DUF2457: Protein of u 36.1 39 0.00085 39.9 4.0 11 796-806 251-261 (458)
47 KOG1512 PHD Zn-finger protein 35.2 9.8 0.00021 42.6 -0.8 59 525-585 259-321 (381)
48 KOG2114 Vacuolar assembly/sort 34.1 56 0.0012 41.3 5.1 70 484-580 811-880 (933)
49 KOG1952 Transcription factor N 33.6 25 0.00054 44.2 2.0 52 526-580 193-244 (950)
50 KOG0526 Nucleosome-binding fac 33.4 1.4E+02 0.0031 36.3 7.9 73 491-580 309-384 (615)
51 PF13771 zf-HC5HC2H: PHD-like 33.2 24 0.00052 31.4 1.4 31 525-559 37-68 (90)
52 KOG2038 CAATT-binding transcri 32.1 69 0.0015 40.4 5.3 11 313-323 347-357 (988)
53 PF15446 zf-PHD-like: PHD/FYVE 31.8 40 0.00086 35.5 2.9 22 539-561 122-143 (175)
54 PF11793 FANCL_C: FANCL C-term 31.6 21 0.00045 31.7 0.8 55 525-582 3-65 (70)
55 KOG1060 Vesicle coat complex A 31.3 53 0.0012 41.4 4.2 21 342-362 288-308 (968)
56 PF07227 DUF1423: Protein of u 30.0 48 0.001 39.1 3.5 65 525-590 129-201 (446)
57 KOG2038 CAATT-binding transcri 29.5 46 0.001 41.8 3.3 20 704-723 909-928 (988)
58 KOG3970 Predicted E3 ubiquitin 27.8 31 0.00067 37.8 1.4 49 525-580 51-102 (299)
59 PF06524 NOA36: NOA36 protein; 26.6 96 0.0021 34.8 4.8 29 522-551 123-151 (314)
60 PF12678 zf-rbx1: RING-H2 zinc 25.1 22 0.00048 31.6 -0.2 46 525-579 20-73 (73)
61 PLN02638 cellulose synthase A 25.1 71 0.0015 41.4 4.0 51 525-583 18-70 (1079)
62 COG5533 UBP5 Ubiquitin C-termi 24.4 42 0.00091 38.5 1.7 33 554-587 267-299 (415)
63 PLN02400 cellulose synthase 24.2 90 0.002 40.5 4.6 51 525-583 37-89 (1085)
64 smart00744 RINGv The RING-vari 23.8 16 0.00034 30.5 -1.3 44 526-578 1-48 (49)
65 PF00130 C1_1: Phorbol esters/ 23.3 67 0.0015 26.1 2.3 34 525-559 12-45 (53)
66 PRK14559 putative protein seri 22.4 72 0.0016 39.2 3.2 49 526-583 3-52 (645)
67 KOG1734 Predicted RING-contain 22.0 25 0.00053 39.4 -0.6 58 521-585 221-283 (328)
68 KOG1632 Uncharacterized PHD Zn 21.4 46 0.001 37.7 1.3 40 540-583 74-115 (345)
69 KOG0827 Predicted E3 ubiquitin 20.1 19 0.00041 41.8 -2.0 56 525-589 5-62 (465)
70 PF05764 YL1: YL1 nuclear prot 20.0 57 0.0012 35.1 1.6 30 681-716 37-66 (240)
No 1
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=99.94 E-value=5.4e-27 Score=263.75 Aligned_cols=348 Identities=28% Similarity=0.382 Sum_probs=243.8
Q ss_pred chhHHHHHHHHHHHHHHHhhhhhhhhhHhhccCCccccccc---------ccchHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002384 433 VADEYSRIRTHLRYLLNRINYEQNLIDAYSSEGWKGLSVEK---------LKPEKELQRATSEILRRKLKIRDLFQRLDS 503 (929)
Q Consensus 433 ~~dE~sRiR~rVRylL~kmk~EQnliDAY~~EGWkgqSREK---------irPekELqRAkkeIlK~K~~IRqLf~rLds 503 (929)
.+...-+...+++|++..+...|++++.|..+||++.+.+| ++|.+++.++..+|..++..++.+.+||+.
T Consensus 150 ~~p~~~r~~n~lk~~t~~~~~~~~li~~~s~e~~~a~~~~k~~~r~~~~~~~~~~~sn~tt~~i~~r~~~~~s~~~hl~t 229 (613)
T KOG4299|consen 150 EVPDSFRDKNSLKYLTSLQNDVQELIDISSTEGWKASSDEKPPGRPFELLIRPAKESNVTTKEILNRKLTYRSLPRHLET 229 (613)
T ss_pred cCCCcchhhhhhhhhhccccccccccchhcccccccCCcccCcccchhhhcCcchhhccchhhhhhhhhhhhhhhhhhhh
Confidence 45667788899999999999999999999999999999999 999999999999999999999999999998
Q ss_pred hcc-CCCCCCccCCCCCcccccc--ccccccccccCCCCCeEEecCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCC
Q 002384 504 LCA-GGFPKSLFDSEGQIDSEDI--YCAKCGSKDLSADNDIILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGCDC 580 (929)
Q Consensus 504 L~s-gs~pkSL~dsDGeid~EDd--~C~VCg~~ds~ddndLLLCDG~CdRaFHq~CLdPPL~kesIPeGDe~WfCp~C~~ 580 (929)
+.. +..+......++.+..++. ||..|++.+.. ++|||||| |+++|||+||+|||..+.||.|. |||+.|.+
T Consensus 230 ~s~~~t~~e~r~~~D~~~~~~~~~~fCsaCn~~~~F--~~~i~CD~-Cp~sFH~~CLePPl~~eniP~g~--W~C~ec~~ 304 (613)
T KOG4299|consen 230 ESKEGTVEEKRRERDKNISVEDIEDFCSACNGSGLF--NDIICCDG-CPRSFHQTCLEPPLEPENIPPGS--WFCPECKI 304 (613)
T ss_pred hhhhccchhhhhhhccccccCCHHHHHHHhCCcccc--ccceeecC-CchHHHHhhcCCCCCcccCCCCc--cccCCCee
Confidence 886 6666666666777666665 99999999876 78999996 99999999999999999999997 99999999
Q ss_pred CCchhhHHh--------hhcCcccc--ccC--cccccchhhhc---CCCCCCCCCCCCCCCCCCCCCCCCC----CCccC
Q 002384 581 KVDCIDLVN--------ELQGTRLF--ITD--NWEKVFPEAAA---GHNQDPNFGLASDDSDDNEYDPDGS----ATDEQ 641 (929)
Q Consensus 581 K~d~ldlLn--------a~qgtefs--l~~--s~rdvFpEvAa---G~~~d~~~d~pSDdsdDdDyDP~~~----e~d~~ 641 (929)
+..+..+.+ -.+++.|. +.. +|..+||+... |.-....-+|.+|++++.+|||... +-++.
T Consensus 305 k~~in~~~~t~~~~~~~~~i~t~~~~~IDs~np~q~~lPe~i~~~~~~v~~g~~~~~sd~~~~~pl~~~~~~~d~e~~e~ 384 (613)
T KOG4299|consen 305 KSVINPKMETLSNRGTVVDIFTQFVSKIDSHNPIQKILPENISESFGGVSRGDDGQYSDTQDEKPLDPPALILDGENDEN 384 (613)
T ss_pred eeecccchhhhhhccchHHHHHHHHHhhhccchhhhhCCHHHHhhccccccCCCCccccccCCcCCChhhhcccccCCcc
Confidence 999888777 55556665 444 48889998876 5545777889999999999999332 33333
Q ss_pred CCCCCCCCC----CCCCCCCCCCCCCcc----ccCCCCCc-cccCCCCCCC--CCCCCCCCCccchhhhhcccCCCCCCC
Q 002384 642 DEGDESSSD----GSSSDDSDFTSTSDE----VEAPADDK-TYLGLSSEDS--EDDEYNPDAPELDDKVTQESSSSGSDF 710 (929)
Q Consensus 642 ~~~e~s~s~----~ssSdds~f~s~sd~----~e~~~~~~-ddLGLPSeDS--EDDDyDP~gPdsd~~~k~eSss~~SDF 710 (929)
+-+. |+.. +=..+.-.+....+. +-..++-+ +-.-|||..+ +...+.|..+...-... .+. ++-
T Consensus 385 g~~s-sg~~~~~~~c~~~~~~s~~vl~c~ye~s~~h~dc~~~~~~~ps~ss~~k~p~~s~~v~~~~~~~e--t~n--~~~ 459 (613)
T KOG4299|consen 385 GIDS-SGTELLCGRCSKTQTESVVVLDCQYEQSPEHPDCKDDSKALPSLSSKWKCPRVSPYVVSCPSGIE--TEN--NLS 459 (613)
T ss_pred CCCc-cCcchhhcccCcchhhhhhhhccccccCCCCccccchhhhCCCCcccccCCCCCCCccccccccc--ccc--ccc
Confidence 3332 2221 000110001111111 11112222 5668999999 88888888777655433 223 333
Q ss_pred CCchHHHHHHhhccCCCCCCCCCCCCCCCCCCccccCCCCCcccchhhhhccCCCCCccccccCcccccccchhhhhHhh
Q 002384 711 TSDSEDLAAVLEDNRSSGNDEGAASPLGHSNGQRYKDGGNNESLNNELLSIIKPGQDGAAPVYGKRSSERLDYKKLYDET 790 (929)
Q Consensus 711 TSDSdDf~a~i~~~~~sg~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~dQd~~~pvs~rRqverLDYKKLydea 790 (929)
+.+..+|-..... .++.-..-+.+.. ..+.++.+++... ....+ -+..+|+||+.|||.||.|.
T Consensus 460 ~~~t~~le~~~n~--~~~e~~~~~~~~~-------~p~~qti~~qs~~--~~~~s-----~~~~~~~ve~~d~kl~~~e~ 523 (613)
T KOG4299|consen 460 VHQTPALENKGNG--DCAEPLKKIPCGT-------APGVQTIQLQSDG--PHLSS-----RRLKIRNVESRDYKLLYLEP 523 (613)
T ss_pred cccchhhhhcccc--ccccchhcccccC-------CCcceeeecccCC--ccccc-----cccceeeccCcccccccccc
Confidence 7888877643332 2322211111111 1233333333210 01111 45678999999999999999
Q ss_pred hCCCCCCCCCCCCCCC
Q 002384 791 YGNVPYDSSDDESWSD 806 (929)
Q Consensus 791 yg~~~sDSSddEdws~ 806 (929)
|++..--....-.|-.
T Consensus 524 ~~~~~lv~~~~~~~~k 539 (613)
T KOG4299|consen 524 IAASGLVNHTVLIIVK 539 (613)
T ss_pred ccccccccccchhhhh
Confidence 9987555555555533
No 2
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=98.55 E-value=7.5e-09 Score=82.84 Aligned_cols=51 Identities=49% Similarity=1.204 Sum_probs=41.2
Q ss_pred ccccccccccCCCCCeEEecCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 002384 526 YCAKCGSKDLSADNDIILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGCDCK 581 (929)
Q Consensus 526 ~C~VCg~~ds~ddndLLLCDG~CdRaFHq~CLdPPL~kesIPeGDe~WfCp~C~~K 581 (929)
+|.+|+.. .+.+.||.|| .|.++||+.|++|++....++.+. |+|+.|..|
T Consensus 1 ~C~vC~~~--~~~~~~i~C~-~C~~~~H~~C~~~~~~~~~~~~~~--w~C~~C~~~ 51 (51)
T PF00628_consen 1 YCPVCGQS--DDDGDMIQCD-SCNRWYHQECVGPPEKAEEIPSGD--WYCPNCRPK 51 (51)
T ss_dssp EBTTTTSS--CTTSSEEEBS-TTSCEEETTTSTSSHSHHSHHSSS--BSSHHHHHC
T ss_pred eCcCCCCc--CCCCCeEEcC-CCChhhCcccCCCChhhccCCCCc--EECcCCcCc
Confidence 58999985 3668999999 599999999999998644455554 999999643
No 3
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=98.53 E-value=2.8e-08 Score=105.73 Aligned_cols=52 Identities=42% Similarity=1.148 Sum_probs=44.4
Q ss_pred cccccccccccccccCCCCCeEEecCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCC
Q 002384 521 DSEDIYCAKCGSKDLSADNDIILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGCD 579 (929)
Q Consensus 521 d~EDd~C~VCg~~ds~ddndLLLCDG~CdRaFHq~CLdPPL~kesIPeGDe~WfCp~C~ 579 (929)
..++.+|.+|+-.+ ++++||||| .|+|+||+|||.|||. ..|+|. |.|..|.
T Consensus 278 cieck~csicgtse--nddqllfcd-dcdrgyhmyclsppm~--eppegs--wsc~KOG 329 (336)
T KOG1244|consen 278 CIECKYCSICGTSE--NDDQLLFCD-DCDRGYHMYCLSPPMV--EPPEGS--WSCHLCL 329 (336)
T ss_pred eeecceeccccCcC--CCceeEeec-ccCCceeeEecCCCcC--CCCCCc--hhHHHHH
Confidence 34667899999764 678999999 7999999999999996 578886 9999994
No 4
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.44 E-value=6.2e-08 Score=113.17 Aligned_cols=51 Identities=35% Similarity=1.080 Sum_probs=44.0
Q ss_pred cccccccccccccCCCCCeEEecCCCCCc-cccccCCCCCCCCCCCCCCCCCCCCCCCC
Q 002384 523 EDIYCAKCGSKDLSADNDIILCDGACDRG-FHQYCLEPPLLKEDIPPDDEGWLCPGCDC 580 (929)
Q Consensus 523 EDd~C~VCg~~ds~ddndLLLCDG~CdRa-FHq~CLdPPL~kesIPeGDe~WfCp~C~~ 580 (929)
+...|.+|...+ ..+-||+||+ |+.+ ||+|||+|+|. .+|.+. |||++|.-
T Consensus 214 E~~~C~IC~~~D--pEdVLLLCDs-CN~~~YH~YCLDPdl~--eiP~~e--WYC~NC~d 265 (1134)
T KOG0825|consen 214 EEVKCDICTVHD--PEDVLLLCDS-CNKVYYHVYCLDPDLS--ESPVNE--WYCTNCSL 265 (1134)
T ss_pred ccccceeeccCC--hHHhheeecc-cccceeeccccCcccc--cccccc--eecCcchh
Confidence 446799999986 3478999996 9999 99999999996 589987 99999954
No 5
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=98.31 E-value=3.1e-07 Score=114.54 Aligned_cols=87 Identities=33% Similarity=0.747 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcc-CCCCCCccCCCCCccccccccccccccccCCCCCeEEecCCCCCccccccCC
Q 002384 480 LQRATSEILRRKLKIRDLFQRLDSLCA-GGFPKSLFDSEGQIDSEDIYCAKCGSKDLSADNDIILCDGACDRGFHQYCLE 558 (929)
Q Consensus 480 LqRAkkeIlK~K~~IRqLf~rLdsL~s-gs~pkSL~dsDGeid~EDd~C~VCg~~ds~ddndLLLCDG~CdRaFHq~CLd 558 (929)
|.+|....++. ..+.+++..+..|.. ..|..+... ..|.+|+... ....|++||+ |..+||++|+.
T Consensus 1073 l~~~~~~~~e~-~s~s~l~~~l~~l~~~i~w~~s~~~---------~~c~~cr~k~--~~~~m~lc~~-c~~~~h~~C~r 1139 (1404)
T KOG1245|consen 1073 LDRWEVRGIEA-KSLSQLHLLLNDLEAEIKWDRSAVN---------ALCKVCRRKK--QDEKMLLCDE-CLSGFHLFCLR 1139 (1404)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhccccch---------hhhhhhhhcc--cchhhhhhHh-hhhhHHHHhhh
Confidence 66777777774 456677777777776 778877665 6899999985 4578999995 99999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCc
Q 002384 559 PPLLKEDIPPDDEGWLCPGCDCKVD 583 (929)
Q Consensus 559 PPL~kesIPeGDe~WfCp~C~~K~d 583 (929)
|.+. .+|.|+ |+|+.|+....
T Consensus 1140 p~~~--~~~~~d--W~C~~c~~e~~ 1160 (1404)
T KOG1245|consen 1140 PALS--SVPPGD--WMCPSCRKEHR 1160 (1404)
T ss_pred hhhc--cCCcCC--ccCCccchhhh
Confidence 9996 599999 99999988765
No 6
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=98.21 E-value=6.9e-07 Score=108.55 Aligned_cols=54 Identities=37% Similarity=0.842 Sum_probs=46.5
Q ss_pred ccccccccccccccCCCCCeEEecCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 002384 522 SEDIYCAKCGSKDLSADNDIILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGCDCKV 582 (929)
Q Consensus 522 ~EDd~C~VCg~~ds~ddndLLLCDG~CdRaFHq~CLdPPL~kesIPeGDe~WfCp~C~~K~ 582 (929)
.++.+|.+|..++..+.+.||+||+ |+.++||.|++.|. ||+|. |+|+.|...+
T Consensus 217 ~~D~~C~iC~~~~~~n~n~ivfCD~-Cnl~VHq~Cygi~~----ipeg~--WlCr~Cl~s~ 270 (1051)
T KOG0955|consen 217 EEDAVCCICLDGECQNSNVIVFCDG-CNLAVHQECYGIPF----IPEGQ--WLCRRCLQSP 270 (1051)
T ss_pred CCCccceeecccccCCCceEEEcCC-CcchhhhhccCCCC----CCCCc--EeehhhccCc
Confidence 3567999999998777799999995 99999999999553 89998 9999996643
No 7
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=97.98 E-value=8.9e-06 Score=92.26 Aligned_cols=52 Identities=37% Similarity=0.799 Sum_probs=46.0
Q ss_pred ccccccccccccccCCCCCeEEecCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCC
Q 002384 522 SEDIYCAKCGSKDLSADNDIILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGCDC 580 (929)
Q Consensus 522 ~EDd~C~VCg~~ds~ddndLLLCDG~CdRaFHq~CLdPPL~kesIPeGDe~WfCp~C~~ 580 (929)
.-+..|.+|..++..+.|.||+||| |+-+.||.|++.+. +|+|- |+|+.|+-
T Consensus 191 ~~d~~C~~c~~t~~eN~naiVfCdg-C~i~VHq~CYGI~f----~peG~--WlCrkCi~ 242 (669)
T COG5141 191 EFDDICTKCTSTHNENSNAIVFCDG-CEICVHQSCYGIQF----LPEGF--WLCRKCIY 242 (669)
T ss_pred hhhhhhHhccccccCCcceEEEecC-cchhhhhhccccee----cCcch--hhhhhhcc
Confidence 4467899999998777799999997 99999999999986 89997 99999954
No 9
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=97.93 E-value=3.1e-06 Score=99.12 Aligned_cols=53 Identities=36% Similarity=0.873 Sum_probs=46.3
Q ss_pred ccccccccccccccccCCCCCeEEecCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCC
Q 002384 520 IDSEDIYCAKCGSKDLSADNDIILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGCD 579 (929)
Q Consensus 520 id~EDd~C~VCg~~ds~ddndLLLCDG~CdRaFHq~CLdPPL~kesIPeGDe~WfCp~C~ 579 (929)
+.+++.+|.||+.++....++||+|| .|+...|+.|++. | .+|.|- |+|..|.
T Consensus 267 e~dedviCDvCrspD~e~~neMVfCd-~Cn~cVHqaCyGI-l---e~p~gp--WlCr~Ca 319 (893)
T KOG0954|consen 267 EYDEDVICDVCRSPDSEEANEMVFCD-KCNICVHQACYGI-L---EVPEGP--WLCRTCA 319 (893)
T ss_pred eccccceeceecCCCccccceeEEec-cchhHHHHhhhce-e---ecCCCC--eeehhcc
Confidence 34477899999999888889999999 7999999999997 2 589886 9999994
No 10
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=97.91 E-value=3.6e-06 Score=95.33 Aligned_cols=59 Identities=25% Similarity=0.553 Sum_probs=46.3
Q ss_pred ccccccccccCCCCCeEEecCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCCCchh
Q 002384 526 YCAKCGSKDLSADNDIILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGCDCKVDCI 585 (929)
Q Consensus 526 ~C~VCg~~ds~ddndLLLCDG~CdRaFHq~CLdPPL~kesIPeGDe~WfCp~C~~K~d~l 585 (929)
.|.||..+.....|+||.|++ |..+||+.|+.|++..+..-.-...|||..|...++-.
T Consensus 170 qc~vC~~g~~~~~NrmlqC~~-C~~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~~~~~~~ 228 (464)
T KOG4323|consen 170 QCSVCYCGGPGAGNRMLQCDK-CRQWYHQACHQPLIKDELAGDPFYEWFCDVCNRGPKKV 228 (464)
T ss_pred eeeeeecCCcCccceeeeecc-cccHHHHHhccCCCCHhhccCccceEeehhhccchhhc
Confidence 399998877667789999995 99999999999998653333333469999998776544
No 11
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=97.72 E-value=1.7e-05 Score=78.81 Aligned_cols=33 Identities=42% Similarity=1.097 Sum_probs=27.9
Q ss_pred ccccccCCCCCCCCCCCCCCCCCCCCCCCCCCchhhH
Q 002384 551 GFHQYCLEPPLLKEDIPPDDEGWLCPGCDCKVDCIDL 587 (929)
Q Consensus 551 aFHq~CLdPPL~kesIPeGDe~WfCp~C~~K~d~ldl 587 (929)
+||++||+|||. .+|+|+ |+|+.|..+.....+
T Consensus 1 g~H~~CL~Ppl~--~~P~g~--W~Cp~C~~~~~~~~~ 33 (148)
T cd04718 1 GFHLCCLRPPLK--EVPEGD--WICPFCEVEKSGQSA 33 (148)
T ss_pred CcccccCCCCCC--CCCCCC--cCCCCCcCCCCCCcc
Confidence 699999999996 599999 999999887654433
No 12
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=97.67 E-value=1.6e-05 Score=92.80 Aligned_cols=49 Identities=31% Similarity=0.836 Sum_probs=43.9
Q ss_pred ccccccccccCCCCCeEEecC-CCCCccccccCCCCCCCCCCCCCCCCCCCCCCCC
Q 002384 526 YCAKCGSKDLSADNDIILCDG-ACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGCDC 580 (929)
Q Consensus 526 ~C~VCg~~ds~ddndLLLCDG-~CdRaFHq~CLdPPL~kesIPeGDe~WfCp~C~~ 580 (929)
-|.||.+..-|.+|.||.||| .|..++||-|+++- .||.|. |||+.|..
T Consensus 7 GCCVCSDErGWaeNPLVYCDG~nCsVAVHQaCYGIv----qVPtGp--WfCrKCes 56 (900)
T KOG0956|consen 7 GCCVCSDERGWAENPLVYCDGHNCSVAVHQACYGIV----QVPTGP--WFCRKCES 56 (900)
T ss_pred ceeeecCcCCCccCceeeecCCCceeeeehhcceeE----ecCCCc--hhhhhhhh
Confidence 388999877799999999999 99999999999983 599998 99999943
No 13
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=97.51 E-value=3.6e-05 Score=89.83 Aligned_cols=64 Identities=31% Similarity=0.759 Sum_probs=52.4
Q ss_pred CCCccccccccccccccccCCCCCeEEecCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCCCchhhH
Q 002384 517 EGQIDSEDIYCAKCGSKDLSADNDIILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGCDCKVDCIDL 587 (929)
Q Consensus 517 DGeid~EDd~C~VCg~~ds~ddndLLLCDG~CdRaFHq~CLdPPL~kesIPeGDe~WfCp~C~~K~d~ldl 587 (929)
.|+..+.+.+|..|+.++ +...+++|++ |+.+||.||..|++.+ ||.|. |+|+.|...+.|-..
T Consensus 61 ~gWrC~~crvCe~c~~~g--D~~kf~~Ck~-cDvsyh~yc~~P~~~~--v~sg~--~~ckk~~~c~qc~~~ 124 (694)
T KOG4443|consen 61 GGWRCPSCRVCEACGTTG--DPKKFLLCKR-CDVSYHCYCQKPPNDK--VPSGP--WLCKKCTRCRQCDST 124 (694)
T ss_pred CCcccCCceeeeeccccC--Cccccccccc-ccccccccccCCcccc--ccCcc--cccHHHHhhhhcccc
Confidence 345667778899999664 6789999995 9999999999999974 99997 999999766655443
No 14
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.50 E-value=3.9e-05 Score=82.86 Aligned_cols=49 Identities=33% Similarity=0.853 Sum_probs=40.4
Q ss_pred cccccccccccccccCCCCCeEEecCCCCCccccccCCCCCCCCCCCCCCCCCCCC-CC
Q 002384 521 DSEDIYCAKCGSKDLSADNDIILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCP-GC 578 (929)
Q Consensus 521 d~EDd~C~VCg~~ds~ddndLLLCDG~CdRaFHq~CLdPPL~kesIPeGDe~WfCp-~C 578 (929)
..++..|.+|+++. -...+|+|| .|+|+||.+|++.. .+|.|. |+|- .|
T Consensus 311 C~~C~lC~IC~~P~--~E~E~~FCD-~CDRG~HT~CVGL~----~lP~G~--WICD~~C 360 (381)
T KOG1512|consen 311 CSSCELCRICLGPV--IESEHLFCD-VCDRGPHTLCVGLQ----DLPRGE--WICDMRC 360 (381)
T ss_pred hcccHhhhccCCcc--cchheeccc-cccCCCCccccccc----cccCcc--chhhhHH
Confidence 34567899999985 347899999 79999999999963 599998 9997 45
No 15
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=97.47 E-value=3.7e-05 Score=90.96 Aligned_cols=54 Identities=35% Similarity=0.928 Sum_probs=45.9
Q ss_pred ccccccccccccccccCCCCCeEEecCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 002384 520 IDSEDIYCAKCGSKDLSADNDIILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGCDCKVD 583 (929)
Q Consensus 520 id~EDd~C~VCg~~ds~ddndLLLCDG~CdRaFHq~CLdPPL~kesIPeGDe~WfCp~C~~K~d 583 (929)
...+..+|.+|..+ +.+|+|| .|..+||.+|++||+. .+|.++ |.|++|.+...
T Consensus 43 ~~~~~e~c~ic~~~-----g~~l~c~-tC~~s~h~~cl~~pl~--~~p~~~--~~c~Rc~~p~~ 96 (696)
T KOG0383|consen 43 DDAEQEACRICADG-----GELLWCD-TCPASFHASCLGPPLT--PQPNGE--FICPRCFCPKN 96 (696)
T ss_pred chhhhhhhhhhcCC-----CcEEEec-cccHHHHHHccCCCCC--cCCccc--eeeeeeccCCC
Confidence 34556789999988 6899999 7999999999999997 488887 99999966544
No 16
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=97.39 E-value=6e-05 Score=80.35 Aligned_cols=38 Identities=32% Similarity=0.830 Sum_probs=32.1
Q ss_pred CCeEEecC-CCC-CccccccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 002384 539 NDIILCDG-ACD-RGFHQYCLEPPLLKEDIPPDDEGWLCPGCDCKV 582 (929)
Q Consensus 539 ndLLLCDG-~Cd-RaFHq~CLdPPL~kesIPeGDe~WfCp~C~~K~ 582 (929)
+.||-||+ .|+ .|||+.|++.. ..|.|. |||+.|....
T Consensus 230 g~Mi~CDn~~C~~eWFH~~CVGL~----~~Pkgk--WyC~~C~~~~ 269 (274)
T KOG1973|consen 230 GKMIGCDNPGCPIEWFHFTCVGLK----TKPKGK--WYCPRCKAEN 269 (274)
T ss_pred ccccccCCCCCCcceEEEeccccc----cCCCCc--ccchhhhhhh
Confidence 79999995 499 99999999974 368887 9999996543
No 17
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=97.39 E-value=8.5e-05 Score=79.17 Aligned_cols=56 Identities=32% Similarity=0.854 Sum_probs=43.0
Q ss_pred CCCCCccccccccccccccccCCCCCeEEecC-CCCC-ccccccCCCCCCCCCCCCCCCCCCCCCCCC
Q 002384 515 DSEGQIDSEDIYCAKCGSKDLSADNDIILCDG-ACDR-GFHQYCLEPPLLKEDIPPDDEGWLCPGCDC 580 (929)
Q Consensus 515 dsDGeid~EDd~C~VCg~~ds~ddndLLLCDG-~CdR-aFHq~CLdPPL~kesIPeGDe~WfCp~C~~ 580 (929)
.+++....+.-+| .|.+.. . +.||-||| .|.+ |||+.|++.. ..|+|- |||+.|..
T Consensus 212 ss~d~se~e~lYC-fCqqvS-y--GqMVaCDn~nCkrEWFH~~CVGLk----~pPKG~--WYC~eCk~ 269 (271)
T COG5034 212 SSEDNSEGEELYC-FCQQVS-Y--GQMVACDNANCKREWFHLECVGLK----EPPKGK--WYCPECKK 269 (271)
T ss_pred CccccccCceeEE-Eecccc-c--ccceecCCCCCchhheeccccccC----CCCCCc--EeCHHhHh
Confidence 3444445566778 788763 2 89999999 8876 8999999973 579997 99999943
No 18
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=96.97 E-value=0.00032 Score=80.21 Aligned_cols=60 Identities=30% Similarity=0.755 Sum_probs=46.1
Q ss_pred ccccccccccccCCCCCeEEecCCCCCccccccCCCCCCCCCCCCC--CCCCCCCCCCCCCchhhHHh
Q 002384 524 DIYCAKCGSKDLSADNDIILCDGACDRGFHQYCLEPPLLKEDIPPD--DEGWLCPGCDCKVDCIDLVN 589 (929)
Q Consensus 524 Dd~C~VCg~~ds~ddndLLLCDG~CdRaFHq~CLdPPL~kesIPeG--De~WfCp~C~~K~d~ldlLn 589 (929)
...|.+|++.. +...++.|| +|..-||+-||+|||.. +|.. ..+|.|..| -+.+..+...
T Consensus 544 ~ysCgiCkks~--dQHll~~CD-tC~lhYHlGCL~PPLTR--~Pkk~kn~gWqCsEC-dk~esSD~e~ 605 (707)
T KOG0957|consen 544 NYSCGICKKST--DQHLLTQCD-TCHLHYHLGCLSPPLTR--LPKKNKNFGWQCSEC-DKNESSDSEQ 605 (707)
T ss_pred ceeeeeeccch--hhHHHhhcc-hhhceeeccccCCcccc--CcccccCcceeeccc-ccccCcchhh
Confidence 34699999863 456788999 89999999999999974 7765 357999999 4444444443
No 19
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=95.75 E-value=0.0015 Score=51.26 Aligned_cols=35 Identities=37% Similarity=1.040 Sum_probs=19.4
Q ss_pred CCeEEecCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCC
Q 002384 539 NDIILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGCD 579 (929)
Q Consensus 539 ndLLLCDG~CdRaFHq~CLdPPL~kesIPeGDe~WfCp~C~ 579 (929)
+.||.|+ .|...+|+.|++... +|.++ .|+|..|.
T Consensus 2 n~ll~C~-~C~v~VH~~CYGv~~----~~~~~-~W~C~~C~ 36 (36)
T PF13831_consen 2 NPLLFCD-NCNVAVHQSCYGVSE----VPDGD-DWLCDRCE 36 (36)
T ss_dssp CEEEE-S-SS--EEEHHHHT-SS------SS------HHH-
T ss_pred CceEEeC-CCCCcCChhhCCccc----CCCCC-cEECCcCC
Confidence 6799999 599999999999853 56652 39999883
No 20
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=94.31 E-value=0.024 Score=65.56 Aligned_cols=55 Identities=25% Similarity=0.639 Sum_probs=44.3
Q ss_pred cccccccccccCCCCCeEEecCCCCCccccccCCCCCCCCCCCCCC-----CCCCCCCCCCC
Q 002384 525 IYCAKCGSKDLSADNDIILCDGACDRGFHQYCLEPPLLKEDIPPDD-----EGWLCPGCDCK 581 (929)
Q Consensus 525 d~C~VCg~~ds~ddndLLLCDG~CdRaFHq~CLdPPL~kesIPeGD-----e~WfCp~C~~K 581 (929)
.+|.||-.....+.++||-|| .|....|-.|++-- +...||.+. +.|||-.|.+-
T Consensus 120 ~iCcVClg~rs~da~ei~qCd-~CGi~VHEgCYGv~-dn~si~s~~s~~stepWfCeaC~~G 179 (707)
T KOG0957|consen 120 VICCVCLGQRSVDAGEILQCD-KCGINVHEGCYGVL-DNVSIPSGSSDCSTEPWFCEACLYG 179 (707)
T ss_pred eEEEEeecCccccccceeecc-ccCceecccccccc-cccccCCCCccCCCCchhhhhHhcC
Confidence 379999987666779999999 69999999999974 555677663 46999988653
No 21
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=93.93 E-value=0.054 Score=67.33 Aligned_cols=55 Identities=35% Similarity=0.786 Sum_probs=44.9
Q ss_pred CCCCCccccccccccccccccCCCCCeEEecCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCC
Q 002384 515 DSEGQIDSEDIYCAKCGSKDLSADNDIILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGCDC 580 (929)
Q Consensus 515 dsDGeid~EDd~C~VCg~~ds~ddndLLLCDG~CdRaFHq~CLdPPL~kesIPeGDe~WfCp~C~~ 580 (929)
.++|.+.. ++.|.+|.+. +.++||. .|++.||+.|+.||+- .+|... |-|-.|..
T Consensus 336 ~se~~~~~-ddhcrf~~d~-----~~~lc~E-t~prvvhlEcv~hP~~--~~~s~~--~e~evc~~ 390 (1414)
T KOG1473|consen 336 DSEGEIEY-DDHCRFCHDL-----GDLLCCE-TCPRVVHLECVFHPRF--AVPSAF--WECEVCNI 390 (1414)
T ss_pred hcccceee-cccccccCcc-----cceeecc-cCCceEEeeecCCccc--cCCCcc--chhhhhhh
Confidence 34444333 3689999987 7899999 7999999999999996 588887 99999973
No 22
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=92.51 E-value=0.052 Score=55.73 Aligned_cols=55 Identities=29% Similarity=0.671 Sum_probs=39.4
Q ss_pred ccccccc-cccCCCCCeEEecCCCCCccccccCCCCCCCCC----CCCCCCCCCCCCCCCC
Q 002384 526 YCAKCGS-KDLSADNDIILCDGACDRGFHQYCLEPPLLKED----IPPDDEGWLCPGCDCK 581 (929)
Q Consensus 526 ~C~VCg~-~ds~ddndLLLCDG~CdRaFHq~CLdPPL~kes----IPeGDe~WfCp~C~~K 581 (929)
.|.+|+. ++...-+.||+|-| |..+||+.||+|....+- |-.++...-|.+|+--
T Consensus 1 ~C~~C~~~g~~~~kG~Lv~CQG-Cs~sYHk~CLG~Rs~ReHlVTKVg~d~FVLQCr~Cig~ 60 (175)
T PF15446_consen 1 TCDTCGYEGDDRNKGPLVYCQG-CSSSYHKACLGPRSQREHLVTKVGDDDFVLQCRRCIGI 60 (175)
T ss_pred CcccccCCCCCccCCCeEEcCc-cChHHHhhhcCCccccceeeEEEcCCceEEechhhcCh
Confidence 4888964 33445689999997 999999999999764322 3334445778888653
No 23
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=89.17 E-value=0.85 Score=56.51 Aligned_cols=63 Identities=25% Similarity=0.226 Sum_probs=35.2
Q ss_pred ccccccchhhhcc-----cCCCC--CCCCCCccccccc-ccccchhhccCCCCCCCCcCCCCCCCCCcccc
Q 002384 219 EENLQTISEDLTK-----VCPVE--PSQSPPRDANKSC-QAGEISCLQQSSSEQTPEFTPGISSHEPSVVN 281 (929)
Q Consensus 219 ~~~~~~~~~~~~~-----~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (929)
+|-++++..-|.. +-+|- -+-||-.-|+|+. .+--.+--|-.+-..+|.-+.+|.|+.|.--+
T Consensus 856 ~elL~li~~HL~ss~L~~~a~vl~~ea~LP~~~As~~s~fTP~~~~~~p~S~~~~p~~~~~In~~~~s~~a 926 (1516)
T KOG1832|consen 856 NELLSLIKKHLASSTLEMPAPVLQQEAPLPKINASKQSTFTPSFSSKQPFSHDALPQSTQRINCCSNSDPA 926 (1516)
T ss_pred HHHHHHHHHHHhhcccCCchhhhhccCCCCCcccccccccCccccCCCCCCCCccchhhhhhhccCCCchh
Confidence 5666666555443 22221 2346777777443 33333334444445588888888888885444
No 24
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=87.16 E-value=0.39 Score=58.22 Aligned_cols=8 Identities=25% Similarity=0.086 Sum_probs=3.9
Q ss_pred ccCCCCCC
Q 002384 675 YLGLSSED 682 (929)
Q Consensus 675 dLGLPSeD 682 (929)
-||.+-.+
T Consensus 711 aL~~~~~~ 718 (784)
T PF04931_consen 711 ALGDADAL 718 (784)
T ss_pred Hhcccccc
Confidence 45655433
No 25
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=86.85 E-value=0.92 Score=51.17 Aligned_cols=44 Identities=30% Similarity=0.596 Sum_probs=32.8
Q ss_pred cccccccccccCCCCCeEEecCCCCCccccccCCCCCCCCCCCCCCCCCCCCCC
Q 002384 525 IYCAKCGSKDLSADNDIILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGC 578 (929)
Q Consensus 525 d~C~VCg~~ds~ddndLLLCDG~CdRaFHq~CLdPPL~kesIPeGDe~WfCp~C 578 (929)
+.|.+|-.... .|+.|-== .|...||-.|.+|.|.. .+ =+||-|
T Consensus 230 ~~CaIClEdY~--~GdklRiL-PC~H~FH~~CIDpWL~~----~r---~~CPvC 273 (348)
T KOG4628|consen 230 DTCAICLEDYE--KGDKLRIL-PCSHKFHVNCIDPWLTQ----TR---TFCPVC 273 (348)
T ss_pred ceEEEeecccc--cCCeeeEe-cCCCchhhccchhhHhh----cC---ccCCCC
Confidence 58999998753 34343335 69999999999999863 12 389999
No 26
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=86.57 E-value=0.18 Score=60.17 Aligned_cols=57 Identities=25% Similarity=0.711 Sum_probs=43.2
Q ss_pred ccccccccccccccCCCCCeEEecCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 002384 522 SEDIYCAKCGSKDLSADNDIILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGCDCKV 582 (929)
Q Consensus 522 ~EDd~C~VCg~~ds~ddndLLLCDG~CdRaFHq~CLdPPL~kesIPeGDe~WfCp~C~~K~ 582 (929)
....+|.+|+..+....+.|+.|. .|...||.+|+...+..-.+ .+ +|.|+.|+.+-
T Consensus 16 ~~~~mc~l~~s~G~~~ag~m~ac~-~c~~~yH~~cvt~~~~~~~l-~~--gWrC~~crvCe 72 (694)
T KOG4443|consen 16 IVCLMCPLCGSSGKGRAGRLLACS-DCGQKYHPYCVTSWAQHAVL-SG--GWRCPSCRVCE 72 (694)
T ss_pred hhhhhhhhhccccccccCcchhhh-hhcccCCcchhhHHHhHHHh-cC--CcccCCceeee
Confidence 345689999988766778999999 69999999999976543112 23 39999996643
No 27
>KOG1246 consensus DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain [General function prediction only]
Probab=85.97 E-value=0.58 Score=57.72 Aligned_cols=49 Identities=41% Similarity=1.048 Sum_probs=40.9
Q ss_pred cccccccccccCCCCCeEEecCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 002384 525 IYCAKCGSKDLSADNDIILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGCDCK 581 (929)
Q Consensus 525 d~C~VCg~~ds~ddndLLLCDG~CdRaFHq~CLdPPL~kesIPeGDe~WfCp~C~~K 581 (929)
..|..|..+... ..+ +|++ |...||.+|+.|++. .++.++ |.|+.|..-
T Consensus 156 ~~~~~~~k~~~~--~~~-~~~~-~~~~~~~~~~~~~~~--~~~~~~--~~~~~~~~~ 204 (904)
T KOG1246|consen 156 PQCNTCSKGKEE--KLL-LCDS-CDDSYHTYCLRPPLT--RVPDGD--WRCPKCIPT 204 (904)
T ss_pred hhhhccccCCCc--cce-eccc-ccCcccccccCCCCC--cCCcCc--ccCCccccc
Confidence 469999987532 445 9995 999999999999997 599998 999999775
No 28
>COG4547 CobT Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) [Coenzyme metabolism]
Probab=85.31 E-value=1.3 Score=51.78 Aligned_cols=96 Identities=27% Similarity=0.342 Sum_probs=54.7
Q ss_pred CCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCccccCCCCCCCCCCCC--CCCCccchhhh
Q 002384 622 ASDDSDDNEYDPDGSATDEQDEGDESSSDGSSSDDSDFTSTSDEVEAPADDKTYLGLSSEDSEDDEY--NPDAPELDDKV 699 (929)
Q Consensus 622 pSDdsdDdDyDP~~~e~d~~~~~e~s~s~~ssSdds~f~s~sd~~e~~~~~~ddLGLPSeDSEDDDy--DP~gPdsd~~~ 699 (929)
..|+++.+|.+|...++.+.+.+|++++|.+.+|+++.+ +++++++- -+..=-|+|++.|+- |++-|--+..-
T Consensus 230 d~de~d~~d~~p~~~e~~e~g~eE~egsd~~~~deae~t--~~e~eege---~daaea~~d~~sde~de~~et~ge~~rp 304 (620)
T COG4547 230 DADEEDGDDDQPDNNEDSEAGREESEGSDESEEDEAEAT--DGEGEEGE---MDAAEASEDSESDESDEDTETPGEDARP 304 (620)
T ss_pred CccccccccCCCCCCcccccccccccccccCccchhhcc--cccccccc---cchhcCCccccccccccCccCcccccCC
Confidence 456666677888888888888888888888888888766 34444332 122334455555443 33323222211
Q ss_pred -------hcccCC----CCCCCCCchHHHHHHhh
Q 002384 700 -------TQESSS----SGSDFTSDSEDLAAVLE 722 (929)
Q Consensus 700 -------k~eSss----~~SDFTSDSdDf~a~i~ 722 (929)
.+++.- .+-||+-..+++|.+-.
T Consensus 305 ~~p~~~~~~~~dYkvftr~fDe~v~aeelcd~~e 338 (620)
T COG4547 305 ATPFTELMEEVDYKVFTREFDEIVLAEELCDEAE 338 (620)
T ss_pred CCcchhhhccccccccchhhhhhhhHHHhhhHHH
Confidence 112111 24577778888886543
No 29
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=80.64 E-value=0.94 Score=39.21 Aligned_cols=34 Identities=32% Similarity=0.817 Sum_probs=28.7
Q ss_pred ccccccccccccCCCCCeEEecCCCCCccccccCCC
Q 002384 524 DIYCAKCGSKDLSADNDIILCDGACDRGFHQYCLEP 559 (929)
Q Consensus 524 Dd~C~VCg~~ds~ddndLLLCDG~CdRaFHq~CLdP 559 (929)
...|.+|+..= .+.+++|.|. .|...||-.|+..
T Consensus 5 ~~~C~~Cg~~~-~~~dDiVvCp-~CgapyHR~C~~~ 38 (54)
T PF14446_consen 5 GCKCPVCGKKF-KDGDDIVVCP-ECGAPYHRDCWEK 38 (54)
T ss_pred CccChhhCCcc-cCCCCEEECC-CCCCcccHHHHhh
Confidence 35799999873 4568999999 7999999999975
No 30
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=79.52 E-value=2.5 Score=52.71 Aligned_cols=18 Identities=6% Similarity=0.040 Sum_probs=9.3
Q ss_pred CCCCCCCCCccchhhhhc
Q 002384 684 EDDEYNPDAPELDDKVTQ 701 (929)
Q Consensus 684 EDDDyDP~gPdsd~~~k~ 701 (929)
+|+++=|-.||.+....+
T Consensus 1460 Gd~~d~~~D~df~~elee 1477 (1516)
T KOG1832|consen 1460 GDEADILIDGDFMEELEE 1477 (1516)
T ss_pred cccccCCCChHHHHHHhh
Confidence 344555555565554443
No 31
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=74.39 E-value=2.1 Score=51.29 Aligned_cols=48 Identities=31% Similarity=0.743 Sum_probs=40.2
Q ss_pred cccccccccccCCCCCeEEecCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 002384 525 IYCAKCGSKDLSADNDIILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGCDCK 581 (929)
Q Consensus 525 d~C~VCg~~ds~ddndLLLCDG~CdRaFHq~CLdPPL~kesIPeGDe~WfCp~C~~K 581 (929)
..|.+|..+ +.+++|+ .|+.+||+.|-++++.. ..+.+. |.|..|...
T Consensus 48 ts~~~~~~~-----gn~~~~~-~~~~s~h~~~~~~~~sp-~~~~~~--~~~~~~~~~ 95 (613)
T KOG4299|consen 48 TSCGICKSG-----GNLLCCD-HCPASFHLECDKPPLSP-DLKGSE--INCSRCPKG 95 (613)
T ss_pred hhcchhhhc-----CCccccc-cCccccchhccCcccCc-cccccc--ccccCCCcc
Confidence 469999988 6799999 69999999999999984 555554 999999663
No 32
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=69.18 E-value=3.3 Score=48.19 Aligned_cols=8 Identities=25% Similarity=0.746 Sum_probs=5.8
Q ss_pred cccccCCC
Q 002384 552 FHQYCLEP 559 (929)
Q Consensus 552 FHq~CLdP 559 (929)
||-|+-..
T Consensus 2 FHEFaSs~ 9 (458)
T PF10446_consen 2 FHEFASSE 9 (458)
T ss_pred ccccccCc
Confidence 78777764
No 33
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=66.62 E-value=4 Score=47.82 Aligned_cols=55 Identities=22% Similarity=0.383 Sum_probs=43.5
Q ss_pred ccccccccccccccCCCCCeEEecCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 002384 522 SEDIYCAKCGSKDLSADNDIILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGCDCKVD 583 (929)
Q Consensus 522 ~EDd~C~VCg~~ds~ddndLLLCDG~CdRaFHq~CLdPPL~kesIPeGDe~WfCp~C~~K~d 583 (929)
.+.-.|.+|....+.+++.++.|+ .|.++||+.|..|+... .+ .|.|..|+....
T Consensus 81 ~~e~~~nv~~s~~~~p~~e~~~~~-r~~~~~~q~~~i~~~~~----~~--~~~~~~c~~~~~ 135 (464)
T KOG4323|consen 81 SSELNPNVLTSETVLPENEKVICG-RCKSGYHQGCNIPRFPS----LD--IGESTECVFPIF 135 (464)
T ss_pred ccccCCcccccccccCchhhhhhh-hhccCcccccCccCcCc----CC--cccccccccccc
Confidence 344569999988777788999999 79999999999997642 22 399999876544
No 34
>KOG1189 consensus Global transcriptional regulator, cell division control protein [Amino acid transport and metabolism]
Probab=65.42 E-value=5.8 Score=48.90 Aligned_cols=14 Identities=21% Similarity=0.482 Sum_probs=7.8
Q ss_pred ccCcccccchhhhc
Q 002384 598 ITDNWEKVFPEAAA 611 (929)
Q Consensus 598 l~~s~rdvFpEvAa 611 (929)
+.-.|..|.+....
T Consensus 844 ~sLNW~~ImKTI~d 857 (960)
T KOG1189|consen 844 QSLNWTKIMKTITD 857 (960)
T ss_pred ccccHHHHhhhhcc
Confidence 33556666665553
No 35
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=65.12 E-value=0.92 Score=57.20 Aligned_cols=54 Identities=11% Similarity=0.143 Sum_probs=42.2
Q ss_pred cccccccccccCCCCCeEEecCCCCCcccc-ccCCCCCCCCCCCCCCCCCCCCCCCCCCchh
Q 002384 525 IYCAKCGSKDLSADNDIILCDGACDRGFHQ-YCLEPPLLKEDIPPDDEGWLCPGCDCKVDCI 585 (929)
Q Consensus 525 d~C~VCg~~ds~ddndLLLCDG~CdRaFHq-~CLdPPL~kesIPeGDe~WfCp~C~~K~d~l 585 (929)
..|.+|+.. +.+|||+|+|+.+||. .||+-..-.-.+|.+- |+|+.|+.++-.+
T Consensus 429 rrl~Ie~~d-----et~l~yysT~pqly~ll~cLd~~~~e~~L~d~i--~~~~ee~~rqM~l 483 (1414)
T KOG1473|consen 429 RRLRIEGMD-----ETLLWYYSTCPQLYHLLRCLDRTYVEMYLCDGI--WERREEIIRQMGL 483 (1414)
T ss_pred eeeEEecCC-----CcEEEEecCcHHHHHHHHHhchHHHHHhhccch--hhhHHHHHHhccc
Confidence 469999865 6899999889999999 9999433323577775 9999998776533
No 36
>KOG3612 consensus PHD Zn-finger protein [General function prediction only]
Probab=60.03 E-value=7.2 Score=46.55 Aligned_cols=65 Identities=22% Similarity=0.323 Sum_probs=46.8
Q ss_pred ccccccccccccccCCCCCeEEecCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCCCchhhHHhhhcCccc
Q 002384 522 SEDIYCAKCGSKDLSADNDIILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGCDCKVDCIDLVNELQGTRL 596 (929)
Q Consensus 522 ~EDd~C~VCg~~ds~ddndLLLCDG~CdRaFHq~CLdPPL~kesIPeGDe~WfCp~C~~K~d~ldlLna~qgtef 596 (929)
..+.+|.-|... +..|.|+ -|.|.||..|+.|.. .++.....|.|+.|...... ...|...|..+
T Consensus 58 N~d~~cfechlp-----g~vl~c~-vc~Rs~h~~c~sp~~---q~r~~s~p~~~p~p~s~k~~-~~~nqp~gn~~ 122 (588)
T KOG3612|consen 58 NIDPFCFECHLP-----GAVLKCI-VCHRSFHENCQSPDP---QKRNYSVPSDKPQPYSFKVN-ELDNQPLGNTQ 122 (588)
T ss_pred CCCcccccccCC-----cceeeee-hhhccccccccCcch---hhccccccccCCcccccCCC-ccccccccchh
Confidence 345789999987 5789999 699999999999965 36666667999999654321 23344444433
No 37
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=58.33 E-value=1.5 Score=53.39 Aligned_cols=49 Identities=27% Similarity=0.338 Sum_probs=41.0
Q ss_pred cccccccccccccCCCCCeEEecCCCCCccccccCCC-CCCCCCCCCCCCCCCCCCCCCC
Q 002384 523 EDIYCAKCGSKDLSADNDIILCDGACDRGFHQYCLEP-PLLKEDIPPDDEGWLCPGCDCK 581 (929)
Q Consensus 523 EDd~C~VCg~~ds~ddndLLLCDG~CdRaFHq~CLdP-PL~kesIPeGDe~WfCp~C~~K 581 (929)
.++.|..|... ...++|+ .|-|.||..|+.| |+. ..+.+- |-|+.|..+
T Consensus 505 ~d~~~~~~~~~-----l~~l~~p-~~lrr~k~d~l~~~P~K--te~i~~--~~~~~~Q~~ 554 (696)
T KOG0383|consen 505 HDISCEEQIKK-----LHLLLCP-HMLRRLKLDVLKPMPLK--TELIGR--VELSPCQKK 554 (696)
T ss_pred chhhHHHHHHh-----hccccCc-hhhhhhhhhhccCCCcc--ceeEEE--EecCHHHHH
Confidence 45789999987 4678899 7999999999999 776 467776 999999554
No 38
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=48.36 E-value=13 Score=33.42 Aligned_cols=31 Identities=19% Similarity=0.536 Sum_probs=21.4
Q ss_pred ccccccccccccCCCCCeEEecCCCCCccccccCC
Q 002384 524 DIYCAKCGSKDLSADNDIILCDGACDRGFHQYCLE 558 (929)
Q Consensus 524 Dd~C~VCg~~ds~ddndLLLCDG~CdRaFHq~CLd 558 (929)
...|.+|++.= ..+.++ -. .|+..||..|..
T Consensus 78 ~~~C~vC~k~l--~~~~f~-~~-p~~~v~H~~C~~ 108 (109)
T PF10367_consen 78 STKCSVCGKPL--GNSVFV-VF-PCGHVVHYSCIK 108 (109)
T ss_pred CCCccCcCCcC--CCceEE-Ee-CCCeEEeccccc
Confidence 35799999863 223333 44 378999999975
No 39
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=45.49 E-value=17 Score=37.84 Aligned_cols=43 Identities=28% Similarity=0.708 Sum_probs=32.2
Q ss_pred cccccccccc---cCCCCCeEEecCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 002384 525 IYCAKCGSKD---LSADNDIILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGCDCK 581 (929)
Q Consensus 525 d~C~VCg~~d---s~ddndLLLCDG~CdRaFHq~CLdPPL~kesIPeGDe~WfCp~C~~K 581 (929)
.+|.+|...+ .+.....+-|. .|...||..|+.. =.||.|...
T Consensus 153 fiCe~C~~~~~IfPF~~~~~~~C~-~C~~v~H~~C~~~-------------~~CpkC~R~ 198 (202)
T PF13901_consen 153 FICEICNSDDIIFPFQIDTTVRCP-KCKSVFHKSCFRK-------------KSCPKCARR 198 (202)
T ss_pred CCCccCCCCCCCCCCCCCCeeeCC-cCccccchhhcCC-------------CCCCCcHhH
Confidence 4699999754 23345778999 5999999999984 149999543
No 40
>KOG1080 consensus Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases [Chromatin structure and dynamics; Transcription]
Probab=43.69 E-value=20 Score=45.84 Aligned_cols=56 Identities=30% Similarity=0.676 Sum_probs=43.8
Q ss_pred cccccccccccCCCCCeEEecCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCC---CCchhh
Q 002384 525 IYCAKCGSKDLSADNDIILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGCDC---KVDCID 586 (929)
Q Consensus 525 d~C~VCg~~ds~ddndLLLCDG~CdRaFHq~CLdPPL~kesIPeGDe~WfCp~C~~---K~d~ld 586 (929)
..|.+|+.-..+..+.++.|+ .|.+..|..|+++- -+..+..|+|..|.. +..|..
T Consensus 574 ~~c~~~~~~~~~~~n~~~~~~-~~~~~~~s~~~g~~-----~~~~~~~~~~~~~~~~~~~r~~~l 632 (1005)
T KOG1080|consen 574 ERCAVCRDDEDWEKNVSIICD-RCTRSVHSECYGNL-----KSYDGTSWVCDSCETLDIKRSCCL 632 (1005)
T ss_pred ccccccccccccccceeeeec-cccccCCCcccccC-----CCCCCCcchhhccccccCCchhhh
Confidence 469999988878889999999 79999999999972 122334699999986 554443
No 41
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=41.60 E-value=13 Score=34.39 Aligned_cols=30 Identities=30% Similarity=0.833 Sum_probs=24.9
Q ss_pred cccccccccccCCCCCeEEecCC--CCCccccccCCC
Q 002384 525 IYCAKCGSKDLSADNDIILCDGA--CDRGFHQYCLEP 559 (929)
Q Consensus 525 d~C~VCg~~ds~ddndLLLCDG~--CdRaFHq~CLdP 559 (929)
..|.+|+... +-.|-|. . |...||..|..-
T Consensus 56 ~~C~iC~~~~----G~~i~C~-~~~C~~~fH~~CA~~ 87 (110)
T PF13832_consen 56 LKCSICGKSG----GACIKCS-HPGCSTAFHPTCARK 87 (110)
T ss_pred CcCcCCCCCC----ceeEEcC-CCCCCcCCCHHHHHH
Confidence 5799999873 6788888 6 999999999754
No 42
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [].
Probab=41.51 E-value=61 Score=40.64 Aligned_cols=13 Identities=31% Similarity=0.483 Sum_probs=11.0
Q ss_pred CchHHHHHHhhcc
Q 002384 712 SDSEDLAAVLEDN 724 (929)
Q Consensus 712 SDSdDf~a~i~~~ 724 (929)
+..++|+.-|.+.
T Consensus 426 ~s~eel~~lL~~~ 438 (840)
T PF04147_consen 426 SSHEELLELLDGY 438 (840)
T ss_pred CCHHHHHHHHhcC
Confidence 7789999999874
No 43
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=40.11 E-value=32 Score=41.64 Aligned_cols=46 Identities=26% Similarity=0.642 Sum_probs=30.1
Q ss_pred ccccccccccc---CCCCCeEEecCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 002384 525 IYCAKCGSKDL---SADNDIILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGCDCKV 582 (929)
Q Consensus 525 d~C~VCg~~ds---~ddndLLLCDG~CdRaFHq~CLdPPL~kesIPeGDe~WfCp~C~~K~ 582 (929)
.+|.+|...+. +......-|+ .|...||..|+.-.. --||.|...+
T Consensus 512 fiCe~Cq~~~iiyPF~~~~~~rC~-~C~avfH~~C~~r~s-----------~~CPrC~R~q 560 (580)
T KOG1829|consen 512 FICELCQHNDIIYPFETRNTRRCS-TCLAVFHKKCLRRKS-----------PCCPRCERRQ 560 (580)
T ss_pred eeeeeccCCCcccccccccceeHH-HHHHHHHHHHHhccC-----------CCCCchHHHH
Confidence 46888855431 1123345688 699999999998632 2399996544
No 44
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=39.43 E-value=12 Score=35.17 Aligned_cols=35 Identities=23% Similarity=0.524 Sum_probs=25.1
Q ss_pred CeEEecCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 002384 540 DIILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGCDCK 581 (929)
Q Consensus 540 dLLLCDG~CdRaFHq~CLdPPL~kesIPeGDe~WfCp~C~~K 581 (929)
.|+++. |...||+.|+.--|..+ ... =.||-|+..
T Consensus 46 plv~g~--C~H~FH~hCI~kWl~~~---~~~--~~CPmCR~~ 80 (85)
T PF12861_consen 46 PLVWGK--CSHNFHMHCILKWLSTQ---SSK--GQCPMCRQP 80 (85)
T ss_pred ceeecc--CccHHHHHHHHHHHccc---cCC--CCCCCcCCe
Confidence 455554 99999999999888642 222 489999754
No 45
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=38.79 E-value=73 Score=35.72 Aligned_cols=9 Identities=33% Similarity=0.866 Sum_probs=5.2
Q ss_pred CCCCCCCCC
Q 002384 572 GWLCPGCDC 580 (929)
Q Consensus 572 ~WfCp~C~~ 580 (929)
..-||.|-.
T Consensus 209 ~~PCPKCg~ 217 (314)
T PF06524_consen 209 PIPCPKCGY 217 (314)
T ss_pred CCCCCCCCC
Confidence 356777733
No 46
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=36.14 E-value=39 Score=39.86 Aligned_cols=11 Identities=36% Similarity=0.676 Sum_probs=6.7
Q ss_pred CCCCCCCCCCC
Q 002384 796 YDSSDDESWSD 806 (929)
Q Consensus 796 sDSSddEdws~ 806 (929)
..+||+.-|..
T Consensus 251 ~~~sd~~~~~~ 261 (458)
T PF10446_consen 251 HSDSDDHVWLH 261 (458)
T ss_pred ccccchhhhcc
Confidence 34567777843
No 47
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=35.21 E-value=9.8 Score=42.62 Aligned_cols=59 Identities=20% Similarity=0.318 Sum_probs=37.1
Q ss_pred ccccccccccc----CCCCCeEEecCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCCCchh
Q 002384 525 IYCAKCGSKDL----SADNDIILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGCDCKVDCI 585 (929)
Q Consensus 525 d~C~VCg~~ds----~ddndLLLCDG~CdRaFHq~CLdPPL~kesIPeGDe~WfCp~C~~K~d~l 585 (929)
..|.+|..+.. ...+.+|+|- .|..++|.+|+.-+.....+-+. -.|-|-.|.-..-|.
T Consensus 259 ~~~~~~~~~~~~~~~~r~~S~I~C~-~C~~~~HP~Ci~M~~elv~~~KT-Y~W~C~~C~lC~IC~ 321 (381)
T KOG1512|consen 259 NERKHFWDIQTNIIQSRRNSWIVCK-PCATRPHPYCVAMIPELVGQYKT-YFWKCSSCELCRICL 321 (381)
T ss_pred hhhhhhhcchhhhhhhhhccceeec-ccccCCCCcchhcCHHHHhHHhh-cchhhcccHhhhccC
Confidence 35777765320 1226799999 79999999999965432112221 249999996554443
No 48
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.13 E-value=56 Score=41.30 Aligned_cols=70 Identities=27% Similarity=0.484 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccCCCCCCccCCCCCccccccccccccccccCCCCCeEEecCCCCCccccccCCCCCCC
Q 002384 484 TSEILRRKLKIRDLFQRLDSLCAGGFPKSLFDSEGQIDSEDIYCAKCGSKDLSADNDIILCDGACDRGFHQYCLEPPLLK 563 (929)
Q Consensus 484 kkeIlK~K~~IRqLf~rLdsL~sgs~pkSL~dsDGeid~EDd~C~VCg~~ds~ddndLLLCDG~CdRaFHq~CLdPPL~k 563 (929)
+..|..++..+.++.+.|..|-... -++- ...|..|+..= +=.+|.= .|...||+.|+.-
T Consensus 811 ~~~Ie~yk~~i~e~r~~l~~lr~sa---~i~q--------~skCs~C~~~L---dlP~VhF--~CgHsyHqhC~e~---- 870 (933)
T KOG2114|consen 811 EDAIEVYKKDIEEKRQELETLRTSA---QIFQ--------VSKCSACEGTL---DLPFVHF--LCGHSYHQHCLED---- 870 (933)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccc---ceee--------eeeecccCCcc---ccceeee--ecccHHHHHhhcc----
Confidence 3445555666666666666555411 1111 13699999752 1234433 3999999999982
Q ss_pred CCCCCCCCCCCCCCCCC
Q 002384 564 EDIPPDDEGWLCPGCDC 580 (929)
Q Consensus 564 esIPeGDe~WfCp~C~~ 580 (929)
++ --||.|..
T Consensus 871 -----~~--~~CP~C~~ 880 (933)
T KOG2114|consen 871 -----KE--DKCPKCLP 880 (933)
T ss_pred -----Cc--ccCCccch
Confidence 11 57999976
No 49
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=33.56 E-value=25 Score=44.20 Aligned_cols=52 Identities=23% Similarity=0.645 Sum_probs=35.6
Q ss_pred ccccccccccCCCCCeEEecCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCC
Q 002384 526 YCAKCGSKDLSADNDIILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGCDC 580 (929)
Q Consensus 526 ~C~VCg~~ds~ddndLLLCDG~CdRaFHq~CLdPPL~kesIPeGDe~WfCp~C~~ 580 (929)
.|.||...- .....|.-|- .|...||+.|..-.-.. .--.++..|-||.|..
T Consensus 193 eCmIC~e~I-~~t~~~WSC~-sCYhVFHl~CI~~WArs-~ek~~~~~WrCP~Cqs 244 (950)
T KOG1952|consen 193 ECMICTERI-KRTAPVWSCK-SCYHVFHLNCIKKWARS-SEKTGQDGWRCPACQS 244 (950)
T ss_pred EEEEeeeec-cccCCceecc-hhhhhhhHHHHHHHHHH-hhhccCccccCCcccc
Confidence 499998753 2235677799 69999999997644322 1223344699999963
No 50
>KOG0526 consensus Nucleosome-binding factor SPN, POB3 subunit [Transcription; Replication, recombination and repair; Chromatin structure and dynamics]
Probab=33.44 E-value=1.4e+02 Score=36.34 Aligned_cols=73 Identities=19% Similarity=0.300 Sum_probs=41.1
Q ss_pred HHHHHHHHHH-hhhhcc--CCCCCCccCCCCCccccccccccccccccCCCCCeEEecCCCCCccccccCCCCCCCCCCC
Q 002384 491 KLKIRDLFQR-LDSLCA--GGFPKSLFDSEGQIDSEDIYCAKCGSKDLSADNDIILCDGACDRGFHQYCLEPPLLKEDIP 567 (929)
Q Consensus 491 K~~IRqLf~r-LdsL~s--gs~pkSL~dsDGeid~EDd~C~VCg~~ds~ddndLLLCDG~CdRaFHq~CLdPPL~kesIP 567 (929)
...+.+++.+ |..||. ...|.......| ..|..|.-.. ..+.|-.=+ .| | +|-+.|||. |+
T Consensus 309 sg~i~Ev~s~V~k~L~~rKit~Pg~F~s~~g------~~av~CS~KA--neG~LYPLe-kg---F-lFl~KP~l~---I~ 372 (615)
T KOG0526|consen 309 SGPIYEVFSIVMKALCGRKITVPGEFLSHSG------TAAVKCSFKA--NEGLLYPLE-KG---F-LFLPKPPLY---IR 372 (615)
T ss_pred CccHHHHHHHHHHHHhCceeeccccccccCC------Cceeeeeecc--cCceEeecc-cc---e-EeecCCceE---ee
Confidence 3445666655 567776 445555554433 5688898663 335444334 34 3 566788885 66
Q ss_pred CCCCCCCCCCCCC
Q 002384 568 PDDEGWLCPGCDC 580 (929)
Q Consensus 568 eGDe~WfCp~C~~ 580 (929)
.++ --+|..-+.
T Consensus 373 f~E-IS~V~fsR~ 384 (615)
T KOG0526|consen 373 FEE-ISSVNFSRS 384 (615)
T ss_pred ccc-eeeEEEEec
Confidence 664 245544433
No 51
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=33.24 E-value=24 Score=31.39 Aligned_cols=31 Identities=32% Similarity=0.756 Sum_probs=24.5
Q ss_pred cccccccccccCCCCCeEEecC-CCCCccccccCCC
Q 002384 525 IYCAKCGSKDLSADNDIILCDG-ACDRGFHQYCLEP 559 (929)
Q Consensus 525 d~C~VCg~~ds~ddndLLLCDG-~CdRaFHq~CLdP 559 (929)
..|.+|+... +..|-|.- .|.+.||..|..-
T Consensus 37 ~~C~~C~~~~----Ga~i~C~~~~C~~~fH~~CA~~ 68 (90)
T PF13771_consen 37 LKCSICKKKG----GACIGCSHPGCSRSFHVPCARK 68 (90)
T ss_pred CCCcCCCCCC----CeEEEEeCCCCCcEEChHHHcc
Confidence 3699999872 56777773 5999999999764
No 52
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=32.09 E-value=69 Score=40.36 Aligned_cols=11 Identities=27% Similarity=0.600 Sum_probs=7.5
Q ss_pred hhhcCCCCCCC
Q 002384 313 IEQLKQPEVPI 323 (929)
Q Consensus 313 ~~~~~~~~~~~ 323 (929)
+.+||-|.--|
T Consensus 347 VNKlGDpqnKi 357 (988)
T KOG2038|consen 347 VNKLGDPQNKI 357 (988)
T ss_pred HHhcCCcchhh
Confidence 66778776655
No 53
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=31.82 E-value=40 Score=35.49 Aligned_cols=22 Identities=36% Similarity=0.785 Sum_probs=18.0
Q ss_pred CCeEEecCCCCCccccccCCCCC
Q 002384 539 NDIILCDGACDRGFHQYCLEPPL 561 (929)
Q Consensus 539 ndLLLCDG~CdRaFHq~CLdPPL 561 (929)
|-|+-|. .|.|+||+.-|-|+-
T Consensus 122 nVLFRC~-~C~RawH~~HLP~~~ 143 (175)
T PF15446_consen 122 NVLFRCT-SCHRAWHFEHLPPPS 143 (175)
T ss_pred heEEecC-CccceeehhhCCCCc
Confidence 5566699 699999999988764
No 54
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=31.63 E-value=21 Score=31.66 Aligned_cols=55 Identities=29% Similarity=0.596 Sum_probs=20.1
Q ss_pred ccccccccccc-CCCCCeEEecC-CCCCccccccCCCCCCC------CCCCCCCCCCCCCCCCCCC
Q 002384 525 IYCAKCGSKDL-SADNDIILCDG-ACDRGFHQYCLEPPLLK------EDIPPDDEGWLCPGCDCKV 582 (929)
Q Consensus 525 d~C~VCg~~ds-~ddndLLLCDG-~CdRaFHq~CLdPPL~k------esIPeGDe~WfCp~C~~K~ 582 (929)
..|.+|..... .+.-..+.|+- .|...||+.||.--|.. .-+|. .+-||.|..+.
T Consensus 3 ~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~---~G~CP~C~~~i 65 (70)
T PF11793_consen 3 LECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPI---FGECPYCSSPI 65 (70)
T ss_dssp -S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT-----EEE-TTT-SEE
T ss_pred CCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeeccc---ccCCcCCCCee
Confidence 45999987632 11223577872 49999999999744321 01222 15799996653
No 55
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.32 E-value=53 Score=41.37 Aligned_cols=21 Identities=29% Similarity=0.301 Sum_probs=11.9
Q ss_pred hhhhhccccccCCCccccccC
Q 002384 342 LMEKKSCLEQSETPPNYVANN 362 (929)
Q Consensus 342 ~~~~~~~~~q~~~~~~~~~~~ 362 (929)
|++--.||-|+..+...++-.
T Consensus 288 LL~stkpLl~S~n~sVVmA~a 308 (968)
T KOG1060|consen 288 LLQSTKPLLQSRNPSVVMAVA 308 (968)
T ss_pred HHHhccHHHhcCCcHHHHHHH
Confidence 344455666776666655543
No 56
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=29.99 E-value=48 Score=39.13 Aligned_cols=65 Identities=25% Similarity=0.425 Sum_probs=39.7
Q ss_pred cccccccccc-cCCCCCeEEecCCCCCccccccCCCCCC-------CCCCCCCCCCCCCCCCCCCCchhhHHhh
Q 002384 525 IYCAKCGSKD-LSADNDIILCDGACDRGFHQYCLEPPLL-------KEDIPPDDEGWLCPGCDCKVDCIDLVNE 590 (929)
Q Consensus 525 d~C~VCg~~d-s~ddndLLLCDG~CdRaFHq~CLdPPL~-------kesIPeGDe~WfCp~C~~K~d~ldlLna 590 (929)
..|.+|.+-+ ..++-.-|-|| .|..+.|..|----.. ...+-.-|-..+|..|..+.+.+-.++.
T Consensus 129 C~C~iC~kfD~~~n~~~Wi~Cd-~CgH~cH~dCALr~~~i~~G~s~~g~~g~~d~~f~C~~C~~~seLlG~vk~ 201 (446)
T PF07227_consen 129 CMCCICSKFDDNKNTCSWIGCD-VCGHWCHLDCALRHELIGTGPSVKGSIGTLDMQFHCRACGKTSELLGFVKK 201 (446)
T ss_pred CCccccCCcccCCCCeeEEecc-CCCceehhhhhcccccccCCccCCCCCccCceEEEccCCCChhhHHHHHHH
Confidence 5678888754 22334667799 6999999999543111 0001111335999999888775544443
No 57
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=29.49 E-value=46 Score=41.76 Aligned_cols=20 Identities=40% Similarity=0.300 Sum_probs=10.2
Q ss_pred CCCCCCCCCchHHHHHHhhc
Q 002384 704 SSSGSDFTSDSEDLAAVLED 723 (929)
Q Consensus 704 ss~~SDFTSDSdDf~a~i~~ 723 (929)
++|+.|-|+|++||-+.=..
T Consensus 909 ~~D~~~D~~d~~d~~e~e~d 928 (988)
T KOG2038|consen 909 SDDDEDDTSDAEDDFEDEDD 928 (988)
T ss_pred cccccccchhhccccccccc
Confidence 33445556666555544333
No 58
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=27.85 E-value=31 Score=37.83 Aligned_cols=49 Identities=29% Similarity=0.556 Sum_probs=30.5
Q ss_pred cccccccccccCCCCCeEEecCCCCCccccccCCCC---CCCCCCCCCCCCCCCCCCCC
Q 002384 525 IYCAKCGSKDLSADNDIILCDGACDRGFHQYCLEPP---LLKEDIPPDDEGWLCPGCDC 580 (929)
Q Consensus 525 d~C~VCg~~ds~ddndLLLCDG~CdRaFHq~CLdPP---L~kesIPeGDe~WfCp~C~~ 580 (929)
.-|..|+-.=.. ++.+-= .|...||+.|++-. |.....|.| ..||.|..
T Consensus 51 pNC~LC~t~La~--gdt~RL--vCyhlfHW~ClneraA~lPanTAPaG---yqCP~Cs~ 102 (299)
T KOG3970|consen 51 PNCRLCNTPLAS--GDTTRL--VCYHLFHWKCLNERAANLPANTAPAG---YQCPCCSQ 102 (299)
T ss_pred CCCceeCCcccc--Ccceee--hhhhhHHHHHhhHHHhhCCCcCCCCc---ccCCCCCC
Confidence 359999865321 222221 38889999999832 222246766 89999943
No 59
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=26.63 E-value=96 Score=34.85 Aligned_cols=29 Identities=24% Similarity=0.505 Sum_probs=20.1
Q ss_pred ccccccccccccccCCCCCeEEecCCCCCc
Q 002384 522 SEDIYCAKCGSKDLSADNDIILCDGACDRG 551 (929)
Q Consensus 522 ~EDd~C~VCg~~ds~ddndLLLCDG~CdRa 551 (929)
.-+..|.-|.++--.-++.|+-|- .|...
T Consensus 123 l~da~C~EC~R~vw~hGGrif~Cs-fC~~f 151 (314)
T PF06524_consen 123 LQDAVCIECERGVWDHGGRIFKCS-FCDNF 151 (314)
T ss_pred CCCcEeeeeecccccCCCeEEEee-cCCCe
Confidence 345678899875322347899899 78764
No 60
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=25.11 E-value=22 Score=31.58 Aligned_cols=46 Identities=28% Similarity=0.473 Sum_probs=28.3
Q ss_pred ccccccccccc--------CCCCCeEEecCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCC
Q 002384 525 IYCAKCGSKDL--------SADNDIILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGCD 579 (929)
Q Consensus 525 d~C~VCg~~ds--------~ddndLLLCDG~CdRaFHq~CLdPPL~kesIPeGDe~WfCp~C~ 579 (929)
+.|.+|...-. ....-.+.-. .|...||..|+..-|.. ...||.|+
T Consensus 20 d~C~IC~~~l~~~~~~~~~~~~~~~i~~~-~C~H~FH~~Ci~~Wl~~--------~~~CP~CR 73 (73)
T PF12678_consen 20 DNCAICREPLEDPCPECQAPQDECPIVWG-PCGHIFHFHCISQWLKQ--------NNTCPLCR 73 (73)
T ss_dssp SBETTTTSBTTSTTCCHHHCTTTS-EEEE-TTSEEEEHHHHHHHHTT--------SSB-TTSS
T ss_pred CcccccChhhhChhhhhcCCccccceEec-ccCCCEEHHHHHHHHhc--------CCcCCCCC
Confidence 45888887521 0112333334 69999999999876642 25899884
No 61
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=25.07 E-value=71 Score=41.37 Aligned_cols=51 Identities=24% Similarity=0.569 Sum_probs=35.1
Q ss_pred ccccccccc-c-cCCCCCeEEecCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 002384 525 IYCAKCGSK-D-LSADNDIILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGCDCKVD 583 (929)
Q Consensus 525 d~C~VCg~~-d-s~ddndLLLCDG~CdRaFHq~CLdPPL~kesIPeGDe~WfCp~C~~K~d 583 (929)
-+|++|+.. + ..++.-.|.|. .|.-..=-.|+.= +.-+|. =.||+|..+.+
T Consensus 18 qiCqICGD~vg~~~~Ge~FVAC~-eC~FPVCrpCYEY-----Er~eG~--q~CPqCktrYk 70 (1079)
T PLN02638 18 QVCQICGDNVGKTVDGEPFVACD-VCAFPVCRPCYEY-----ERKDGN--QSCPQCKTKYK 70 (1079)
T ss_pred ceeeecccccCcCCCCCEEEEec-cCCCccccchhhh-----hhhcCC--ccCCccCCchh
Confidence 489999974 2 23445778899 7977666678754 245666 79999955543
No 62
>COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=24.38 E-value=42 Score=38.47 Aligned_cols=33 Identities=24% Similarity=0.525 Sum_probs=20.2
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCCCCCchhhH
Q 002384 554 QYCLEPPLLKEDIPPDDEGWLCPGCDCKVDCIDL 587 (929)
Q Consensus 554 q~CLdPPL~kesIPeGDe~WfCp~C~~K~d~ldl 587 (929)
+.|+.--.. ++.-.|++.|.||.|..|+...+.
T Consensus 267 ~eC~~~f~~-~e~L~g~d~W~CpkC~~k~ss~K~ 299 (415)
T COG5533 267 QECIDRFYE-EEKLEGKDAWRCPKCGRKESSRKR 299 (415)
T ss_pred HHHHHHhhh-HHhhcCcccccCchhcccccchhe
Confidence 446553222 234456778999999887664433
No 63
>PLN02400 cellulose synthase
Probab=24.20 E-value=90 Score=40.52 Aligned_cols=51 Identities=20% Similarity=0.541 Sum_probs=34.6
Q ss_pred ccccccccc-c-cCCCCCeEEecCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 002384 525 IYCAKCGSK-D-LSADNDIILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGCDCKVD 583 (929)
Q Consensus 525 d~C~VCg~~-d-s~ddndLLLCDG~CdRaFHq~CLdPPL~kesIPeGDe~WfCp~C~~K~d 583 (929)
.+|++|+.. + ..+++-.|.|. .|.-..=-.|+.= +.-+|. =.||+|.-+.+
T Consensus 37 qiCqICGD~VG~t~dGe~FVAC~-eCaFPVCRpCYEY-----ERkeGn--q~CPQCkTrYk 89 (1085)
T PLN02400 37 QICQICGDDVGVTETGDVFVACN-ECAFPVCRPCYEY-----ERKDGT--QCCPQCKTRYR 89 (1085)
T ss_pred ceeeecccccCcCCCCCEEEEEc-cCCCccccchhhe-----ecccCC--ccCcccCCccc
Confidence 589999974 2 23446788899 7966555567653 244665 79999965543
No 64
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=23.78 E-value=16 Score=30.53 Aligned_cols=44 Identities=25% Similarity=0.637 Sum_probs=26.8
Q ss_pred ccccccccccCCCCCeEE-ecCCCC---CccccccCCCCCCCCCCCCCCCCCCCCCC
Q 002384 526 YCAKCGSKDLSADNDIIL-CDGACD---RGFHQYCLEPPLLKEDIPPDDEGWLCPGC 578 (929)
Q Consensus 526 ~C~VCg~~ds~ddndLLL-CDG~Cd---RaFHq~CLdPPL~kesIPeGDe~WfCp~C 578 (929)
+|.+|...+ .+++.++. |. |. ..+|..||..-+.. .+. ..|+.|
T Consensus 1 ~CrIC~~~~-~~~~~l~~PC~--C~G~~~~vH~~Cl~~W~~~----~~~--~~C~iC 48 (49)
T smart00744 1 ICRICHDEG-DEGDPLVSPCR--CKGSLKYVHQECLERWINE----SGN--KTCEIC 48 (49)
T ss_pred CccCCCCCC-CCCCeeEeccc--cCCchhHHHHHHHHHHHHH----cCC--CcCCCC
Confidence 488888732 22333332 54 54 67999999987642 122 478777
No 65
>PF00130 C1_1: Phorbol esters/diacylglycerol binding domain (C1 domain); InterPro: IPR002219 Diacylglycerol (DAG) is an important second messenger. Phorbol esters (PE) are analogues of DAG and potent tumour promoters that cause a variety of physiological changes when administered to both cells and tissues. DAG activates a family of serine/threonine protein kinases, collectively known as protein kinase C (PKC) []. Phorbol esters can directly stimulate PKC. The N-terminal region of PKC, known as C1, has been shown [] to bind PE and DAG in a phospholipid and zinc-dependent fashion. The C1 region contains one or two copies (depending on the isozyme of PKC) of a cysteine-rich domain, which is about 50 amino-acid residues long, and which is essential for DAG/PE-binding. The DAG/PE-binding domain binds two zinc ions; the ligands of these metal ions are probably the six cysteines and two histidines that are conserved in this domain.; GO: 0035556 intracellular signal transduction; PDB: 1RFH_A 2FNF_X 3PFQ_A 1PTQ_A 1PTR_A 2VRW_B 1XA6_A 2ENN_A 1TBN_A 1TBO_A ....
Probab=23.28 E-value=67 Score=26.11 Aligned_cols=34 Identities=26% Similarity=0.539 Sum_probs=24.7
Q ss_pred cccccccccccCCCCCeEEecCCCCCccccccCCC
Q 002384 525 IYCAKCGSKDLSADNDIILCDGACDRGFHQYCLEP 559 (929)
Q Consensus 525 d~C~VCg~~ds~ddndLLLCDG~CdRaFHq~CLdP 559 (929)
.+|.+|+..-......-+.|. .|...+|..|+.-
T Consensus 12 ~~C~~C~~~i~g~~~~g~~C~-~C~~~~H~~C~~~ 45 (53)
T PF00130_consen 12 TYCDVCGKFIWGLGKQGYRCS-WCGLVCHKKCLSK 45 (53)
T ss_dssp EB-TTSSSBECSSSSCEEEET-TTT-EEETTGGCT
T ss_pred CCCcccCcccCCCCCCeEEEC-CCCChHhhhhhhh
Confidence 579999986422336788999 6999999999885
No 66
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=22.41 E-value=72 Score=39.17 Aligned_cols=49 Identities=22% Similarity=0.670 Sum_probs=32.8
Q ss_pred ccccccccccCCCCCeEEecCCCCCccc-cccCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 002384 526 YCAKCGSKDLSADNDIILCDGACDRGFH-QYCLEPPLLKEDIPPDDEGWLCPGCDCKVD 583 (929)
Q Consensus 526 ~C~VCg~~ds~ddndLLLCDG~CdRaFH-q~CLdPPL~kesIPeGDe~WfCp~C~~K~d 583 (929)
+|..|+.. .+....+|. .|....- ..|-.-.- .+|.+. =||+.|-.+..
T Consensus 3 ~Cp~Cg~~---n~~~akFC~-~CG~~l~~~~Cp~CG~---~~~~~~--~fC~~CG~~~~ 52 (645)
T PRK14559 3 ICPQCQFE---NPNNNRFCQ-KCGTSLTHKPCPQCGT---EVPVDE--AHCPNCGAETG 52 (645)
T ss_pred cCCCCCCc---CCCCCcccc-ccCCCCCCCcCCCCCC---CCCccc--ccccccCCccc
Confidence 58888865 235566888 5877643 56766542 367775 79999966644
No 67
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=22.00 E-value=25 Score=39.41 Aligned_cols=58 Identities=29% Similarity=0.592 Sum_probs=34.3
Q ss_pred cccccccccccccc-cCCCC-Ce---EEecCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCCCchh
Q 002384 521 DSEDIYCAKCGSKD-LSADN-DI---ILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGCDCKVDCI 585 (929)
Q Consensus 521 d~EDd~C~VCg~~d-s~ddn-dL---LLCDG~CdRaFHq~CLdPPL~kesIPeGDe~WfCp~C~~K~d~l 585 (929)
..++.+|.+|++.- +..+. -+ +.== .|+..||-+|..---. +-+ .-.||.|..|.+..
T Consensus 221 hl~d~vCaVCg~~~~~s~~eegvienty~L-sCnHvFHEfCIrGWci---vGK---kqtCPYCKekVdl~ 283 (328)
T KOG1734|consen 221 HLSDSVCAVCGQQIDVSVDEEGVIENTYKL-SCNHVFHEFCIRGWCI---VGK---KQTCPYCKEKVDLK 283 (328)
T ss_pred CCCcchhHhhcchheeecchhhhhhhheee-ecccchHHHhhhhhee---ecC---CCCCchHHHHhhHh
Confidence 34567999999752 11100 00 0111 4999999999875431 211 25899997776643
No 68
>KOG1632 consensus Uncharacterized PHD Zn-finger protein [General function prediction only]
Probab=21.36 E-value=46 Score=37.74 Aligned_cols=40 Identities=25% Similarity=0.552 Sum_probs=31.4
Q ss_pred CeEEecCCCCCcccccc--CCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 002384 540 DIILCDGACDRGFHQYC--LEPPLLKEDIPPDDEGWLCPGCDCKVD 583 (929)
Q Consensus 540 dLLLCDG~CdRaFHq~C--LdPPL~kesIPeGDe~WfCp~C~~K~d 583 (929)
.++-|++ |..+||-.| ++++.. .+|.-+ .|+|..|..-++
T Consensus 74 ~~~~cd~-C~~~~~~ec~~v~~~~~--e~p~~~-~~~c~~c~~~~~ 115 (345)
T KOG1632|consen 74 LMEQCDL-CEDWYHGECWEVGTAEK--EAPKED-PKVCDECKEAQD 115 (345)
T ss_pred hhhcccc-ccccccccccccCchhh--cCCccc-cccccccchhhh
Confidence 6889995 999999999 888764 455543 599999966554
No 69
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=20.10 E-value=19 Score=41.85 Aligned_cols=56 Identities=25% Similarity=0.432 Sum_probs=36.5
Q ss_pred cccccccccccCCCCCeEEecCCCCCccccccCCCCCCCCCCCCCCCCC--CCCCCCCCCchhhHHh
Q 002384 525 IYCAKCGSKDLSADNDIILCDGACDRGFHQYCLEPPLLKEDIPPDDEGW--LCPGCDCKVDCIDLVN 589 (929)
Q Consensus 525 d~C~VCg~~ds~ddndLLLCDG~CdRaFHq~CLdPPL~kesIPeGDe~W--fCp~C~~K~d~ldlLn 589 (929)
..|.+|...- ....++---. +|...||..||.-.+. .-| | -||.|..+..+.-++|
T Consensus 5 A~C~Ic~d~~-p~~~~l~~i~-~cGhifh~~cl~qwfe--~~P-----s~R~cpic~ik~~~r~~~N 62 (465)
T KOG0827|consen 5 AECHICIDGR-PNDHELGPIG-TCGHIFHTTCLTQWFE--GDP-----SNRGCPICQIKLQERHVAN 62 (465)
T ss_pred ceeeEeccCC-cccccccccc-chhhHHHHHHHHHHHc--cCC-----ccCCCCceeecccceeeec
Confidence 4699996542 2223333334 7999999999998653 233 6 6999986665554443
No 70
>PF05764 YL1: YL1 nuclear protein; InterPro: IPR008895 The proteins in this family are designated YL1 []. They have been shown to be DNA-binding and may be transcription factors [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=20.02 E-value=57 Score=35.07 Aligned_cols=30 Identities=30% Similarity=0.660 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCccchhhhhcccCCCCCCCCCchHH
Q 002384 681 EDSEDDEYNPDAPELDDKVTQESSSSGSDFTSDSED 716 (929)
Q Consensus 681 eDSEDDDyDP~gPdsd~~~k~eSss~~SDFTSDSdD 716 (929)
||.+|+||-=...+.|..+ ++|||.+|++|
T Consensus 37 Eee~D~ef~~~~~eed~~~------~Dsdf~~se~d 66 (240)
T PF05764_consen 37 EEEDDEEFESEEEEEDEEE------DDSDFDDSEDD 66 (240)
T ss_pred ccCCCccccCCCccccccc------cccccCccccC
Done!