Query 002384
Match_columns 929
No_of_seqs 252 out of 1205
Neff 3.1
Searched_HMMs 29240
Date Tue Mar 26 00:10:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002384.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002384hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1fp0_A KAP-1 corepressor; PHD 99.3 2.4E-12 8.3E-17 115.5 5.5 57 517-583 18-74 (88)
2 1wev_A Riken cDNA 1110020M19; 99.3 4.2E-13 1.4E-17 119.1 0.0 58 522-582 14-73 (88)
3 2yt5_A Metal-response element- 99.2 6.4E-13 2.2E-17 110.8 -0.3 58 522-582 4-62 (66)
4 1mm2_A MI2-beta; PHD, zinc fin 99.2 8.1E-12 2.8E-16 104.1 4.9 52 521-582 6-57 (61)
5 1xwh_A Autoimmune regulator; P 99.2 5.6E-12 1.9E-16 106.2 2.2 51 522-582 6-56 (66)
6 1f62_A Transcription factor WS 99.2 1E-11 3.4E-16 99.2 3.4 48 526-580 2-49 (51)
7 2l5u_A Chromodomain-helicase-D 99.1 1.3E-11 4.5E-16 102.9 3.0 53 519-581 6-58 (61)
8 2puy_A PHD finger protein 21A; 99.1 1.5E-11 5.1E-16 101.7 2.7 49 522-580 3-51 (60)
9 2yql_A PHD finger protein 21A; 99.1 1.7E-11 5.7E-16 100.3 2.5 49 522-580 7-55 (56)
10 2e6r_A Jumonji/ARID domain-con 99.1 1.7E-11 6E-16 109.7 2.7 54 521-581 13-66 (92)
11 2l43_A N-teminal domain from h 99.1 5.8E-12 2E-16 112.1 -0.5 56 521-583 22-77 (88)
12 2lri_C Autoimmune regulator; Z 99.1 3.3E-11 1.1E-15 102.5 3.9 50 523-582 11-60 (66)
13 2ku3_A Bromodomain-containing 99.1 1.4E-11 4.7E-16 106.1 1.3 53 522-581 14-66 (71)
14 3o36_A Transcription intermedi 99.1 4.7E-11 1.6E-15 116.4 5.2 51 522-582 2-52 (184)
15 3u5n_A E3 ubiquitin-protein li 99.1 5.1E-11 1.7E-15 118.4 4.7 52 521-582 4-55 (207)
16 2e6s_A E3 ubiquitin-protein li 99.1 7.5E-11 2.6E-15 103.0 5.0 49 525-580 27-76 (77)
17 3asl_A E3 ubiquitin-protein li 99.1 6.2E-11 2.1E-15 101.5 4.2 49 526-581 20-69 (70)
18 2ro1_A Transcription intermedi 99.0 2.8E-10 9.7E-15 112.6 4.5 49 524-582 2-50 (189)
19 3shb_A E3 ubiquitin-protein li 98.9 4.2E-10 1.4E-14 98.5 4.1 49 526-580 28-76 (77)
20 3ask_A E3 ubiquitin-protein li 98.9 4.6E-10 1.6E-14 115.1 4.3 49 525-580 175-224 (226)
21 3v43_A Histone acetyltransfera 98.9 1.7E-09 6E-14 98.9 5.9 55 521-581 58-112 (112)
22 2kwj_A Zinc finger protein DPF 98.8 9.9E-10 3.4E-14 101.0 3.0 51 523-580 57-107 (114)
23 2k16_A Transcription initiatio 98.8 2.2E-09 7.4E-14 91.7 3.3 54 521-581 15-68 (75)
24 2lv9_A Histone-lysine N-methyl 98.7 1.4E-08 4.6E-13 91.8 6.3 59 516-583 20-78 (98)
25 2ysm_A Myeloid/lymphoid or mix 98.7 6.9E-09 2.4E-13 94.1 4.5 58 518-582 48-105 (111)
26 4gne_A Histone-lysine N-methyl 98.5 3.7E-08 1.2E-12 91.1 3.6 48 522-581 13-62 (107)
27 2ysm_A Myeloid/lymphoid or mix 98.4 1.8E-07 6.3E-12 84.8 5.8 57 519-582 2-58 (111)
28 2lbm_A Transcriptional regulat 98.4 2.2E-08 7.6E-13 96.6 -1.0 54 522-583 61-119 (142)
29 1wen_A Inhibitor of growth fam 98.3 7E-07 2.4E-11 76.9 5.3 49 523-582 15-66 (71)
30 1weu_A Inhibitor of growth fam 98.3 9.9E-07 3.4E-11 79.7 6.3 50 523-583 35-87 (91)
31 2vnf_A ING 4, P29ING4, inhibit 98.2 2.2E-07 7.7E-12 77.4 1.3 48 523-581 9-59 (60)
32 3c6w_A P28ING5, inhibitor of g 98.2 4.3E-07 1.5E-11 75.6 1.4 48 523-581 8-58 (59)
33 2jmi_A Protein YNG1, ING1 homo 98.1 9.5E-07 3.3E-11 79.6 2.8 47 522-579 24-74 (90)
34 2g6q_A Inhibitor of growth pro 98.1 7.2E-07 2.5E-11 75.1 1.5 49 523-582 10-61 (62)
35 3ql9_A Transcriptional regulat 98.0 3.6E-07 1.2E-11 87.1 -1.5 53 522-582 55-112 (129)
36 1we9_A PHD finger family prote 98.0 1.2E-06 4E-11 72.7 1.7 55 522-582 4-59 (64)
37 1wee_A PHD finger family prote 97.8 6.9E-06 2.4E-10 70.0 2.1 54 521-581 13-66 (72)
38 3o70_A PHD finger protein 13; 97.8 1E-05 3.5E-10 69.1 2.7 51 521-580 16-66 (68)
39 2ri7_A Nucleosome-remodeling f 97.6 4E-06 1.4E-10 80.7 -1.5 54 523-582 7-60 (174)
40 2kwj_A Zinc finger protein DPF 97.6 1.4E-05 4.7E-10 73.6 1.8 57 525-584 2-64 (114)
41 1x4i_A Inhibitor of growth pro 97.6 1.2E-05 4.3E-10 69.0 0.8 48 523-581 5-55 (70)
42 2rsd_A E3 SUMO-protein ligase 97.6 4.1E-05 1.4E-09 64.9 3.6 52 523-580 9-64 (68)
43 1wew_A DNA-binding family prot 97.5 2.4E-05 8.2E-10 67.9 1.6 53 523-582 15-73 (78)
44 1wem_A Death associated transc 97.5 9E-06 3.1E-10 69.8 -1.7 55 522-582 14-71 (76)
45 1wep_A PHF8; structural genomi 97.5 2.6E-05 8.8E-10 67.6 1.1 54 523-582 11-64 (79)
46 3v43_A Histone acetyltransfera 97.3 1.9E-05 6.4E-10 72.4 -1.3 56 525-584 6-67 (112)
47 3o7a_A PHD finger protein 13 v 97.3 6.9E-05 2.4E-09 60.5 2.0 46 525-579 5-50 (52)
48 2xb1_A Pygopus homolog 2, B-ce 97.3 3.9E-05 1.3E-09 70.2 -0.1 55 525-583 4-63 (105)
49 3kqi_A GRC5, PHD finger protei 97.3 4.8E-05 1.7E-09 65.4 0.4 54 522-581 8-61 (75)
50 2vpb_A Hpygo1, pygopus homolog 97.2 3.2E-05 1.1E-09 65.7 -1.1 53 523-579 7-64 (65)
51 2kgg_A Histone demethylase jar 97.1 8.6E-05 2.9E-09 60.0 0.5 48 526-579 4-52 (52)
52 1wil_A KIAA1045 protein; ring 96.9 0.00015 5E-09 65.6 0.3 53 523-579 14-74 (89)
53 3lqh_A Histone-lysine N-methyl 96.8 0.00056 1.9E-08 68.3 3.6 57 525-583 3-65 (183)
54 3pur_A Lysine-specific demethy 96.5 0.00086 3E-08 76.2 2.4 41 537-581 54-94 (528)
55 3kv5_D JMJC domain-containing 96.2 0.0005 1.7E-08 77.2 -1.9 53 523-581 36-88 (488)
56 3kv4_A PHD finger protein 8; e 95.6 0.00089 3.1E-08 74.6 -2.9 51 525-581 6-56 (447)
57 4bbq_A Lysine-specific demethy 94.1 0.014 4.9E-07 52.9 1.3 40 539-581 73-114 (117)
58 2ku7_A MLL1 PHD3-CYP33 RRM chi 92.6 0.03 1E-06 50.1 0.9 40 540-581 1-44 (140)
59 4gne_A Histone-lysine N-methyl 80.5 0.72 2.5E-05 42.7 2.2 39 526-575 60-98 (107)
60 2d8s_A Cellular modulator of i 77.1 0.54 1.9E-05 40.9 0.3 53 522-582 13-68 (80)
61 4bbq_A Lysine-specific demethy 74.4 0.71 2.4E-05 41.8 0.3 37 525-582 8-44 (117)
62 3a1b_A DNA (cytosine-5)-methyl 73.8 0.45 1.6E-05 47.1 -1.2 54 524-582 79-135 (159)
63 3rsn_A SET1/ASH2 histone methy 72.9 2.8 9.6E-05 42.2 4.2 53 525-582 6-60 (177)
64 3k1l_B Fancl; UBC, ring, RWD, 69.7 2.5 8.4E-05 46.8 3.2 41 520-561 304-347 (381)
65 2kiz_A E3 ubiquitin-protein li 67.7 1.6 5.6E-05 35.2 1.0 51 521-582 11-61 (69)
66 1x4j_A Ring finger protein 38; 66.5 1.4 4.7E-05 36.4 0.4 50 522-582 21-70 (75)
67 1iym_A EL5; ring-H2 finger, ub 66.5 3.2 0.00011 31.9 2.5 48 524-581 5-52 (55)
68 2pv0_B DNA (cytosine-5)-methyl 65.3 0.96 3.3E-05 50.0 -1.0 53 524-582 93-149 (386)
69 2l0b_A E3 ubiquitin-protein li 64.8 1.6 5.6E-05 37.7 0.5 49 523-582 39-87 (91)
70 4a0k_B E3 ubiquitin-protein li 62.4 1.7 6E-05 40.5 0.3 27 547-581 83-109 (117)
71 2ect_A Ring finger protein 126 60.4 5.4 0.00019 32.9 2.9 50 523-583 14-63 (78)
72 2ecm_A Ring finger and CHY zin 57.7 3.1 0.00011 31.9 0.9 48 524-581 5-52 (55)
73 1vyx_A ORF K3, K3RING; zinc-bi 56.4 1 3.4E-05 37.3 -2.2 50 523-582 5-57 (60)
74 1v87_A Deltex protein 2; ring- 55.6 2.6 8.8E-05 37.3 0.2 54 525-582 26-92 (114)
75 3dpl_R Ring-box protein 1; ubi 55.5 2.4 8.2E-05 38.6 -0.1 27 547-581 72-98 (106)
76 4ayc_A E3 ubiquitin-protein li 54.4 10 0.00035 35.0 4.0 45 525-583 54-98 (138)
77 2ecl_A Ring-box protein 2; RNF 51.8 8 0.00027 32.8 2.6 51 523-582 14-74 (81)
78 2ep4_A Ring finger protein 24; 50.5 3.6 0.00012 33.6 0.2 49 523-582 14-62 (74)
79 2d8t_A Dactylidin, ring finger 48.7 8 0.00027 31.5 2.0 49 522-584 13-61 (71)
80 3l11_A E3 ubiquitin-protein li 45.3 7.7 0.00026 34.4 1.5 77 522-611 13-91 (115)
81 2lq6_A Bromodomain-containing 37.6 16 0.00056 32.4 2.4 31 525-558 18-49 (87)
82 1chc_A Equine herpes virus-1 r 37.6 9 0.00031 30.6 0.7 47 523-582 4-50 (68)
83 2ct0_A Non-SMC element 1 homol 35.8 12 0.00041 32.4 1.2 46 525-581 16-61 (74)
84 3lrq_A E3 ubiquitin-protein li 34.1 7.7 0.00026 34.0 -0.3 47 525-583 23-69 (100)
85 3ng2_A RNF4, snurf, ring finge 33.7 6.2 0.00021 31.7 -0.9 51 523-582 9-61 (71)
86 2egp_A Tripartite motif-contai 32.6 35 0.0012 27.7 3.5 53 524-583 12-64 (79)
87 3nw0_A Non-structural maintena 32.3 24 0.00081 36.3 2.9 45 525-580 181-225 (238)
88 2ckl_B Ubiquitin ligase protei 31.1 7.5 0.00026 36.7 -0.9 48 523-582 53-100 (165)
89 2ea6_A Ring finger protein 4; 29.6 9.8 0.00034 30.1 -0.4 51 523-582 14-66 (69)
90 2djb_A Polycomb group ring fin 28.6 8.3 0.00028 31.5 -1.0 48 523-583 14-61 (72)
91 2ysl_A Tripartite motif-contai 28.1 21 0.00072 28.8 1.4 49 523-582 19-67 (73)
92 2xeu_A Ring finger protein 4; 27.7 6 0.00021 30.9 -1.9 51 524-583 3-55 (64)
93 2yur_A Retinoblastoma-binding 25.3 29 0.001 28.5 1.8 48 523-581 14-61 (74)
94 3fl2_A E3 ubiquitin-protein li 25.2 9.5 0.00033 34.3 -1.3 46 525-583 53-98 (124)
95 2ecw_A Tripartite motif-contai 24.8 13 0.00045 30.4 -0.4 53 523-583 18-70 (85)
96 2csy_A Zinc finger protein 183 22.8 21 0.00071 29.7 0.4 46 523-582 14-59 (81)
97 1e4u_A Transcriptional repress 22.0 25 0.00086 30.2 0.8 52 523-583 10-61 (78)
98 1z6u_A NP95-like ring finger p 21.6 13 0.00043 35.4 -1.3 46 525-583 79-124 (150)
99 2ct2_A Tripartite motif protei 21.5 17 0.00057 30.2 -0.5 52 523-582 14-66 (88)
No 1
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=99.28 E-value=2.4e-12 Score=115.52 Aligned_cols=57 Identities=32% Similarity=0.825 Sum_probs=48.7
Q ss_pred CCCccccccccccccccccCCCCCeEEecCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 002384 517 EGQIDSEDIYCAKCGSKDLSADNDIILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGCDCKVD 583 (929)
Q Consensus 517 DGeid~EDd~C~VCg~~ds~ddndLLLCDG~CdRaFHq~CLdPPL~kesIPeGDe~WfCp~C~~K~d 583 (929)
+...+.++++|.+|+.+ ++||+||+ |+++||++|+.|||. .+|.|+ |||+.|.....
T Consensus 18 ~~~~d~n~~~C~vC~~~-----g~LL~CD~-C~~~fH~~Cl~PpL~--~~P~g~--W~C~~C~~~~~ 74 (88)
T 1fp0_A 18 FGTLDDSATICRVCQKP-----GDLVMCNQ-CEFCFHLDCHLPALQ--DVPGEE--WSCSLCHVLPD 74 (88)
T ss_dssp CCSSSSSSSCCSSSCSS-----SCCEECTT-SSCEECTTSSSTTCC--CCCSSS--CCCCSCCCCCS
T ss_pred ccccCCCCCcCcCcCCC-----CCEEECCC-CCCceecccCCCCCC--CCcCCC--cCCccccCCCc
Confidence 34456677899999987 57999995 999999999999996 599998 99999987654
No 2
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=99.27 E-value=4.2e-13 Score=119.11 Aligned_cols=58 Identities=22% Similarity=0.669 Sum_probs=47.8
Q ss_pred ccccccccccccccCCCCCeEEecCCCCCccccccCCCCCCCC--CCCCCCCCCCCCCCCCCC
Q 002384 522 SEDIYCAKCGSKDLSADNDIILCDGACDRGFHQYCLEPPLLKE--DIPPDDEGWLCPGCDCKV 582 (929)
Q Consensus 522 ~EDd~C~VCg~~ds~ddndLLLCDG~CdRaFHq~CLdPPL~ke--sIPeGDe~WfCp~C~~K~ 582 (929)
.++.+|.+|+..+....+.||+||+ |+++||++||+|||..+ .+|.|+ |||+.|+.+.
T Consensus 14 e~~~~C~vC~~~~~~~~~~ll~CD~-C~~~yH~~Cl~Ppl~~~~~~~p~g~--W~C~~C~~~~ 73 (88)
T 1wev_A 14 EMGLACVVCRQMTVASGNQLVECQE-CHNLYHQDCHKPQVTDKEVNDPRLV--WYCARCTRQM 73 (88)
T ss_dssp HHCCSCSSSCCCCCCTTCCEEECSS-SCCEEETTTSSSCCCHHHHHCTTCC--CCCHHHHHHH
T ss_pred CCCCcCCCCCCCCCCCCCceEECCC-CCCeEcCccCCCcccccccCCCCCC--eeCccccchh
Confidence 3567899999986555689999995 99999999999999621 279998 9999996654
No 3
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=99.24 E-value=6.4e-13 Score=110.78 Aligned_cols=58 Identities=29% Similarity=0.760 Sum_probs=47.1
Q ss_pred ccccccccccccccCCCCCeEEecCCCCCccccccCCCCCCCCCC-CCCCCCCCCCCCCCCC
Q 002384 522 SEDIYCAKCGSKDLSADNDIILCDGACDRGFHQYCLEPPLLKEDI-PPDDEGWLCPGCDCKV 582 (929)
Q Consensus 522 ~EDd~C~VCg~~ds~ddndLLLCDG~CdRaFHq~CLdPPL~kesI-PeGDe~WfCp~C~~K~ 582 (929)
.++.+|.+|+.+...+.+.||+||+ |+++||++||+|||....+ |.++ |||+.|..+.
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~-C~~~~H~~C~~p~l~~~~~~p~~~--W~C~~C~~~~ 62 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDK-CGQGYHQLCHTPHIDSSVIDSDEK--WLCRQCVFAT 62 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSS-SCCEEETTTSSSCCCHHHHHSSCC--CCCHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCC-CChHHHhhhCCCcccccccCCCCC--EECCCCcCcc
Confidence 4567899999886556789999995 9999999999999863224 7787 9999996543
No 4
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=99.21 E-value=8.1e-12 Score=104.13 Aligned_cols=52 Identities=38% Similarity=1.101 Sum_probs=45.0
Q ss_pred cccccccccccccccCCCCCeEEecCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 002384 521 DSEDIYCAKCGSKDLSADNDIILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGCDCKV 582 (929)
Q Consensus 521 d~EDd~C~VCg~~ds~ddndLLLCDG~CdRaFHq~CLdPPL~kesIPeGDe~WfCp~C~~K~ 582 (929)
+.++.+|.+|+.+ +.||+||+ |+++||++||.|||. .+|.|+ |||+.|..+.
T Consensus 6 d~~~~~C~vC~~~-----g~ll~Cd~-C~~~fH~~Cl~ppl~--~~p~g~--W~C~~C~~~~ 57 (61)
T 1mm2_A 6 DHHMEFCRVCKDG-----GELLCCDT-CPSSYHIHCLNPPLP--EIPNGE--WLCPRCTCPA 57 (61)
T ss_dssp CSSCSSCTTTCCC-----SSCBCCSS-SCCCBCSSSSSSCCS--SCCSSC--CCCTTTTTTC
T ss_pred cCCCCcCCCCCCC-----CCEEEcCC-CCHHHcccccCCCcC--cCCCCc--cCChhhcCch
Confidence 3456789999975 68999995 999999999999997 599998 9999997764
No 5
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=99.17 E-value=5.6e-12 Score=106.23 Aligned_cols=51 Identities=41% Similarity=0.994 Sum_probs=44.1
Q ss_pred ccccccccccccccCCCCCeEEecCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 002384 522 SEDIYCAKCGSKDLSADNDIILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGCDCKV 582 (929)
Q Consensus 522 ~EDd~C~VCg~~ds~ddndLLLCDG~CdRaFHq~CLdPPL~kesIPeGDe~WfCp~C~~K~ 582 (929)
.++.+|.+|+.+ +.||+||+ |+++||++||+|||. .+|.++ |||+.|..+.
T Consensus 6 ~~~~~C~vC~~~-----g~ll~CD~-C~~~fH~~Cl~ppl~--~~P~g~--W~C~~C~~~~ 56 (66)
T 1xwh_A 6 KNEDECAVCRDG-----GELICCDG-CPRAFHLACLSPPLR--EIPSGT--WRCSSCLQAT 56 (66)
T ss_dssp SCCCSBSSSSCC-----SSCEECSS-CCCEECTTTSSSCCS--SCCSSC--CCCHHHHHTC
T ss_pred CCCCCCccCCCC-----CCEEEcCC-CChhhcccccCCCcC--cCCCCC--eECccccCcc
Confidence 356799999976 58999995 999999999999997 589987 9999996543
No 6
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=99.17 E-value=1e-11 Score=99.24 Aligned_cols=48 Identities=42% Similarity=1.202 Sum_probs=42.3
Q ss_pred ccccccccccCCCCCeEEecCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCC
Q 002384 526 YCAKCGSKDLSADNDIILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGCDC 580 (929)
Q Consensus 526 ~C~VCg~~ds~ddndLLLCDG~CdRaFHq~CLdPPL~kesIPeGDe~WfCp~C~~ 580 (929)
+|.+|+..+ +.+.||+||+ |+++||++|++|||. .+|.|+ |||+.|..
T Consensus 2 ~C~vC~~~~--~~~~ll~Cd~-C~~~~H~~Cl~p~l~--~~P~g~--W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKG--EDDKLILCDE-CNKAFHLFCLRPALY--EVPDGE--WQCPACQP 49 (51)
T ss_dssp CCTTTCCSS--CCSCCEECTT-TCCEECHHHHCTTCC--SCCSSC--CSCTTTSC
T ss_pred CCCCCCCCC--CCCCEEECCC-CChhhCcccCCCCcC--CCCCCc--EECcCccc
Confidence 699999875 4578999995 999999999999996 599987 99999964
No 7
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=99.14 E-value=1.3e-11 Score=102.85 Aligned_cols=53 Identities=36% Similarity=0.959 Sum_probs=45.1
Q ss_pred CccccccccccccccccCCCCCeEEecCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 002384 519 QIDSEDIYCAKCGSKDLSADNDIILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGCDCK 581 (929)
Q Consensus 519 eid~EDd~C~VCg~~ds~ddndLLLCDG~CdRaFHq~CLdPPL~kesIPeGDe~WfCp~C~~K 581 (929)
....++.+|.+|+.+ +.||+|| .|+++||++||+|||. .+|.|+ |||+.|..+
T Consensus 6 ~~~~~~~~C~vC~~~-----g~ll~CD-~C~~~fH~~Cl~p~l~--~~p~g~--W~C~~C~~~ 58 (61)
T 2l5u_A 6 YETDHQDYCEVCQQG-----GEIILCD-TCPRAYHMVCLDPDME--KAPEGK--WSCPHCEKE 58 (61)
T ss_dssp CSSCCCSSCTTTSCC-----SSEEECS-SSSCEEEHHHHCTTCC--SCCCSS--CCCTTGGGG
T ss_pred ccCCCCCCCccCCCC-----CcEEECC-CCChhhhhhccCCCCC--CCCCCc--eECcccccc
Confidence 344566899999986 6899999 5999999999999986 489998 999999653
No 8
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=99.13 E-value=1.5e-11 Score=101.67 Aligned_cols=49 Identities=37% Similarity=1.066 Sum_probs=42.9
Q ss_pred ccccccccccccccCCCCCeEEecCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCC
Q 002384 522 SEDIYCAKCGSKDLSADNDIILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGCDC 580 (929)
Q Consensus 522 ~EDd~C~VCg~~ds~ddndLLLCDG~CdRaFHq~CLdPPL~kesIPeGDe~WfCp~C~~ 580 (929)
.++.+|.+|+.+ +.||+||+ |+++||++||+|||. .+|.|+ |||+.|..
T Consensus 3 ~~~~~C~vC~~~-----g~ll~Cd~-C~~~fH~~Cl~ppl~--~~p~g~--W~C~~C~~ 51 (60)
T 2puy_A 3 IHEDFCSVCRKS-----GQLLMCDT-CSRVYHLDCLDPPLK--TIPKGM--WICPRCQD 51 (60)
T ss_dssp CCCSSCTTTCCC-----SSCEECSS-SSCEECGGGSSSCCS--SCCCSC--CCCHHHHH
T ss_pred CCCCCCcCCCCC-----CcEEEcCC-CCcCEECCcCCCCcC--CCCCCc--eEChhccC
Confidence 356789999986 68999995 999999999999997 489987 99999954
No 9
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.12 E-value=1.7e-11 Score=100.27 Aligned_cols=49 Identities=37% Similarity=1.092 Sum_probs=42.8
Q ss_pred ccccccccccccccCCCCCeEEecCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCC
Q 002384 522 SEDIYCAKCGSKDLSADNDIILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGCDC 580 (929)
Q Consensus 522 ~EDd~C~VCg~~ds~ddndLLLCDG~CdRaFHq~CLdPPL~kesIPeGDe~WfCp~C~~ 580 (929)
.++.+|.+|+.. +.||+|| .|+++||++||+|||. .+|.++ |||+.|..
T Consensus 7 ~~~~~C~vC~~~-----g~ll~Cd-~C~~~~H~~Cl~ppl~--~~p~g~--W~C~~C~~ 55 (56)
T 2yql_A 7 GHEDFCSVCRKS-----GQLLMCD-TCSRVYHLDCLDPPLK--TIPKGM--WICPRCQD 55 (56)
T ss_dssp SSCCSCSSSCCS-----SCCEECS-SSSCEECSSSSSSCCC--SCCCSS--CCCHHHHC
T ss_pred CCCCCCccCCCC-----CeEEEcC-CCCcceECccCCCCcC--CCCCCc--eEChhhhC
Confidence 456789999986 5899999 5999999999999997 589987 99999953
No 10
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.11 E-value=1.7e-11 Score=109.66 Aligned_cols=54 Identities=39% Similarity=1.011 Sum_probs=45.8
Q ss_pred cccccccccccccccCCCCCeEEecCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 002384 521 DSEDIYCAKCGSKDLSADNDIILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGCDCK 581 (929)
Q Consensus 521 d~EDd~C~VCg~~ds~ddndLLLCDG~CdRaFHq~CLdPPL~kesIPeGDe~WfCp~C~~K 581 (929)
..++.+|.+|+..+ +.+.||+||+ |+++||++||+|||. .+|.++ |||+.|..+
T Consensus 13 ~~~~~~C~vC~~~~--~~~~ll~CD~-C~~~~H~~Cl~Ppl~--~~P~g~--W~C~~C~~~ 66 (92)
T 2e6r_A 13 FIDSYICQVCSRGD--EDDKLLFCDG-CDDNYHIFCLLPPLP--EIPRGI--WRCPKCILA 66 (92)
T ss_dssp CCCCCCCSSSCCSG--GGGGCEECTT-TCCEECSSSSSSCCS--SCCSSC--CCCHHHHHH
T ss_pred ccCCCCCccCCCcC--CCCCEEEcCC-CCchhccccCCCCcc--cCCCCC--cCCccCcCc
Confidence 34567899999875 3468999995 999999999999997 599998 999999543
No 11
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=99.11 E-value=5.8e-12 Score=112.05 Aligned_cols=56 Identities=34% Similarity=0.723 Sum_probs=47.3
Q ss_pred cccccccccccccccCCCCCeEEecCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 002384 521 DSEDIYCAKCGSKDLSADNDIILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGCDCKVD 583 (929)
Q Consensus 521 d~EDd~C~VCg~~ds~ddndLLLCDG~CdRaFHq~CLdPPL~kesIPeGDe~WfCp~C~~K~d 583 (929)
..++.+|.+|+.++..+.+.||+||+ |+++||++|++||+ +|.|+ |||+.|..+..
T Consensus 22 ~~~~~~C~vC~~~~s~~~~~ll~CD~-C~~~fH~~Cl~p~~----vP~g~--W~C~~C~~~~~ 77 (88)
T 2l43_A 22 IDEDAVCSICMDGESQNSNVILFCDM-CNLAVHQECYGVPY----IPEGQ--WLCRHCLQSRA 77 (88)
T ss_dssp CCCCCCCSSCCSSSSCSEEEEEECSS-SCCCCCHHHHTCSS----CCSSC--CCCHHHHHHTT
T ss_pred CCCCCcCCcCCCCCCCCCCCEEECCC-CCchhhcccCCCCc----cCCCc--eECccccCccc
Confidence 34668999999886556789999995 99999999999985 79988 99999966543
No 12
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=99.10 E-value=3.3e-11 Score=102.54 Aligned_cols=50 Identities=28% Similarity=0.654 Sum_probs=43.0
Q ss_pred cccccccccccccCCCCCeEEecCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 002384 523 EDIYCAKCGSKDLSADNDIILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGCDCKV 582 (929)
Q Consensus 523 EDd~C~VCg~~ds~ddndLLLCDG~CdRaFHq~CLdPPL~kesIPeGDe~WfCp~C~~K~ 582 (929)
....|.+|+.+ ++||+|| .|+++||++||+|||. .+|.|+ |||+.|....
T Consensus 11 ~~~~C~vC~~~-----~~ll~Cd-~C~~~~H~~Cl~P~l~--~~P~g~--W~C~~C~~~~ 60 (66)
T 2lri_C 11 PGARCGVCGDG-----TDVLRCT-HCAAAFHWRCHFPAGT--SRPGTG--LRCRSCSGDV 60 (66)
T ss_dssp TTCCCTTTSCC-----TTCEECS-SSCCEECHHHHCTTTC--CCCSSS--CCCTTTTTCC
T ss_pred CCCCcCCCCCC-----CeEEECC-CCCCceecccCCCccC--cCCCCC--EECccccCCC
Confidence 34679999976 5799999 5999999999999997 599998 9999996543
No 13
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=99.10 E-value=1.4e-11 Score=106.15 Aligned_cols=53 Identities=36% Similarity=0.802 Sum_probs=45.5
Q ss_pred ccccccccccccccCCCCCeEEecCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 002384 522 SEDIYCAKCGSKDLSADNDIILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGCDCK 581 (929)
Q Consensus 522 ~EDd~C~VCg~~ds~ddndLLLCDG~CdRaFHq~CLdPPL~kesIPeGDe~WfCp~C~~K 581 (929)
.++.+|.+|+.++..+.+.||+||+ |+++||++||+||+ +|.|+ |||+.|..+
T Consensus 14 ~~~~~C~vC~~~~s~~~~~ll~CD~-C~~~~H~~Cl~~~~----vP~g~--W~C~~C~~~ 66 (71)
T 2ku3_A 14 DEDAVCSICMDGESQNSNVILFCDM-CNLAVHQECYGVPY----IPEGQ--WLCRHCLQS 66 (71)
T ss_dssp CSSCSCSSSCCCCCCSSSCEEECSS-SCCEEEHHHHTCSS----CCSSC--CCCHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCC-CCCccccccCCCCc----CCCCC--cCCccCcCc
Confidence 3457899999987667789999995 99999999999984 79998 999999543
No 14
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=99.10 E-value=4.7e-11 Score=116.42 Aligned_cols=51 Identities=27% Similarity=0.831 Sum_probs=44.7
Q ss_pred ccccccccccccccCCCCCeEEecCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 002384 522 SEDIYCAKCGSKDLSADNDIILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGCDCKV 582 (929)
Q Consensus 522 ~EDd~C~VCg~~ds~ddndLLLCDG~CdRaFHq~CLdPPL~kesIPeGDe~WfCp~C~~K~ 582 (929)
.++++|.+|+.+ ++||+||+ |+++||++||.|||. .+|.|+ |+|+.|..+.
T Consensus 2 ~~~~~C~~C~~~-----g~ll~Cd~-C~~~~H~~C~~p~l~--~~p~~~--W~C~~C~~~~ 52 (184)
T 3o36_A 2 PNEDWCAVCQNG-----GELLCCEK-CPKVFHLSCHVPTLT--NFPSGE--WICTFCRDLS 52 (184)
T ss_dssp CSCSSCTTTCCC-----SSCEECSS-SSCEECTTTSSSCCS--SCCSSC--CCCTTTSCSS
T ss_pred CCCCccccCCCC-----CeeeecCC-CCcccCccccCCCCC--CCCCCC--EECccccCcc
Confidence 356899999976 57999995 999999999999997 599998 9999997654
No 15
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=99.08 E-value=5.1e-11 Score=118.45 Aligned_cols=52 Identities=35% Similarity=0.879 Sum_probs=45.4
Q ss_pred cccccccccccccccCCCCCeEEecCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 002384 521 DSEDIYCAKCGSKDLSADNDIILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGCDCKV 582 (929)
Q Consensus 521 d~EDd~C~VCg~~ds~ddndLLLCDG~CdRaFHq~CLdPPL~kesIPeGDe~WfCp~C~~K~ 582 (929)
+.++++|.+|+.+ ++||+||+ |+++||++||+|||. .+|.|+ |+|+.|....
T Consensus 4 d~~~~~C~~C~~~-----g~ll~Cd~-C~~~~H~~Cl~p~l~--~~p~~~--W~C~~C~~~~ 55 (207)
T 3u5n_A 4 DPNEDWCAVCQNG-----GDLLCCEK-CPKVFHLTCHVPTLL--SFPSGD--WICTFCRDIG 55 (207)
T ss_dssp CSSCSSBTTTCCC-----EEEEECSS-SSCEECTTTSSSCCS--SCCSSC--CCCTTTSCSS
T ss_pred CCCCCCCCCCCCC-----CceEEcCC-CCCccCCccCCCCCC--CCCCCC--EEeCceeCcc
Confidence 4466889999977 57999995 999999999999997 599998 9999997764
No 16
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.08 E-value=7.5e-11 Score=102.98 Aligned_cols=49 Identities=43% Similarity=1.123 Sum_probs=42.7
Q ss_pred cccccccccccCCCCCeEEecCCCCCccccccCCCCCCCCCCCCC-CCCCCCCCCCC
Q 002384 525 IYCAKCGSKDLSADNDIILCDGACDRGFHQYCLEPPLLKEDIPPD-DEGWLCPGCDC 580 (929)
Q Consensus 525 d~C~VCg~~ds~ddndLLLCDG~CdRaFHq~CLdPPL~kesIPeG-De~WfCp~C~~ 580 (929)
.+|.+|+..+ +.+.||+||+ |+++||++||+|||. .+|.| + |||+.|..
T Consensus 27 c~C~vC~~~~--~~~~ll~CD~-C~~~yH~~Cl~Ppl~--~~P~g~~--W~C~~C~~ 76 (77)
T 2e6s_A 27 CSCRVCGGKH--EPNMQLLCDE-CNVAYHIYCLNPPLD--KVPEEEY--WYCPSCKT 76 (77)
T ss_dssp SSCSSSCCCC--CSTTEEECSS-SCCEEETTSSSSCCS--SCCCSSC--CCCTTTCC
T ss_pred CCCcCcCCcC--CCCCEEEcCC-CCccccccccCCCcc--CCCCCCC--cCCcCccC
Confidence 4899999864 4589999995 999999999999997 59998 7 99999964
No 17
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=99.07 E-value=6.2e-11 Score=101.54 Aligned_cols=49 Identities=41% Similarity=1.209 Sum_probs=42.2
Q ss_pred ccccccccccCCCCCeEEecCCCCCccccccCCCCCCCCCCCCC-CCCCCCCCCCCC
Q 002384 526 YCAKCGSKDLSADNDIILCDGACDRGFHQYCLEPPLLKEDIPPD-DEGWLCPGCDCK 581 (929)
Q Consensus 526 ~C~VCg~~ds~ddndLLLCDG~CdRaFHq~CLdPPL~kesIPeG-De~WfCp~C~~K 581 (929)
+|.+|++.+ +++.||+||+ |+++||++||+|||. .+|.| + |||+.|..+
T Consensus 20 ~C~~C~~~~--~~~~ll~CD~-C~~~yH~~Cl~Ppl~--~~P~g~~--W~C~~C~~~ 69 (70)
T 3asl_A 20 ACHLCGGRQ--DPDKQLMCDE-CDMAFHIYCLDPPLS--SVPSEDE--WYCPECRND 69 (70)
T ss_dssp SBTTTCCCS--CGGGEEECTT-TCCEEEGGGSSSCCS--SCCSSSC--CCCTTTSCC
T ss_pred CCcCCCCcC--CCCCEEEcCC-CCCceecccCCCCcC--CCCCCCC--cCCcCccCc
Confidence 688889764 4579999995 999999999999997 59998 6 999999754
No 18
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=98.96 E-value=2.8e-10 Score=112.59 Aligned_cols=49 Identities=31% Similarity=0.854 Sum_probs=43.2
Q ss_pred ccccccccccccCCCCCeEEecCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 002384 524 DIYCAKCGSKDLSADNDIILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGCDCKV 582 (929)
Q Consensus 524 Dd~C~VCg~~ds~ddndLLLCDG~CdRaFHq~CLdPPL~kesIPeGDe~WfCp~C~~K~ 582 (929)
+++|.+|+.+ ++||+||+ |+++||++|+.|||. .+|.|+ |+|+.|..+.
T Consensus 2 ~~~C~~C~~~-----g~ll~Cd~-C~~~~H~~Cl~p~l~--~~p~g~--W~C~~C~~~~ 50 (189)
T 2ro1_A 2 ATICRVCQKP-----GDLVMCNQ-CEFCFHLDCHLPALQ--DVPGEE--WSCSLCHVLP 50 (189)
T ss_dssp CCCBTTTCCC-----SSCCCCTT-TCCBCCSTTSTTCCS--SCCCTT--CCTTTTSCSC
T ss_pred CCcCccCCCC-----CceeECCC-CCchhccccCCCCcc--cCCCCC--CCCcCccCCC
Confidence 3689999977 57999995 999999999999997 599998 9999997763
No 19
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=98.93 E-value=4.2e-10 Score=98.47 Aligned_cols=49 Identities=43% Similarity=1.219 Sum_probs=41.3
Q ss_pred ccccccccccCCCCCeEEecCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCC
Q 002384 526 YCAKCGSKDLSADNDIILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGCDC 580 (929)
Q Consensus 526 ~C~VCg~~ds~ddndLLLCDG~CdRaFHq~CLdPPL~kesIPeGDe~WfCp~C~~ 580 (929)
.|.+|+..+ +++.||+|| .|+++||++||+|||. .+|.|+ .|||+.|+.
T Consensus 28 ~C~vC~~~~--d~~~ll~CD-~C~~~yH~~Cl~PpL~--~~P~g~-~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQ--DPDKQLMCD-ECDMAFHIYCLDPPLS--SVPSED-EWYCPECRN 76 (77)
T ss_dssp SBTTTCCCS--CGGGEEECT-TTCCEEETTTSSSCCS--SCCSSS-CCCCTTTC-
T ss_pred cCCccCCCC--CCcceeEeC-CCCCccCcccCCCccc--CCCCCC-ceECcCccc
Confidence 688888874 557999999 5999999999999997 589883 599999953
No 20
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=98.92 E-value=4.6e-10 Score=115.13 Aligned_cols=49 Identities=41% Similarity=1.198 Sum_probs=39.2
Q ss_pred cccccccccccCCCCCeEEecCCCCCccccccCCCCCCCCCCCCC-CCCCCCCCCCC
Q 002384 525 IYCAKCGSKDLSADNDIILCDGACDRGFHQYCLEPPLLKEDIPPD-DEGWLCPGCDC 580 (929)
Q Consensus 525 d~C~VCg~~ds~ddndLLLCDG~CdRaFHq~CLdPPL~kesIPeG-De~WfCp~C~~ 580 (929)
..|.+|+..+ +++.||+||+ |+++||++||+|||. .+|.| + |||+.|..
T Consensus 175 c~C~vC~~~~--~~~~lL~CD~-C~~~yH~~CL~PPL~--~vP~G~~--W~Cp~C~~ 224 (226)
T 3ask_A 175 CACHLCGGRQ--DPDKQLMCDE-CDMAFHIYCLDPPLS--SVPSEDE--WYCPECRN 224 (226)
T ss_dssp TSCSSSCCCC--C--CCEECSS-SCCEECSCC--CCCC--SCCSSSC--CCCGGGC-
T ss_pred CCCcCCCCCC--CCCCeEEcCC-CCcceeCccCCCCcc--cCCCCCC--CCCcCCcC
Confidence 4899999864 4589999995 999999999999997 59998 7 99999964
No 21
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=98.87 E-value=1.7e-09 Score=98.94 Aligned_cols=55 Identities=35% Similarity=0.930 Sum_probs=45.1
Q ss_pred cccccccccccccccCCCCCeEEecCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 002384 521 DSEDIYCAKCGSKDLSADNDIILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGCDCK 581 (929)
Q Consensus 521 d~EDd~C~VCg~~ds~ddndLLLCDG~CdRaFHq~CLdPPL~kesIPeGDe~WfCp~C~~K 581 (929)
-.+..+|.+|+..+ .+++.||+|| .|+++||++||+|||. .+|.|+ |||+.|..|
T Consensus 58 C~~C~~C~vC~~~~-~~~~~ll~Cd-~C~~~yH~~Cl~p~l~--~~P~~~--W~C~~C~~k 112 (112)
T 3v43_A 58 CIECKTCSSCRDQG-KNADNMLFCD-SCDRGFHMECCDPPLT--RMPKGM--WICQICRPR 112 (112)
T ss_dssp CTTTCCBTTTCCCC-CTTCCCEECT-TTCCEECGGGCSSCCS--SCCSSC--CCCTTTSCC
T ss_pred cccCCccccccCcC-CCccceEEcC-CCCCeeecccCCCCCC--CCCCCC--eECCCCCCc
Confidence 33455799999753 2457899999 5999999999999997 599997 999999764
No 22
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=98.83 E-value=9.9e-10 Score=100.99 Aligned_cols=51 Identities=41% Similarity=1.081 Sum_probs=43.2
Q ss_pred cccccccccccccCCCCCeEEecCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCC
Q 002384 523 EDIYCAKCGSKDLSADNDIILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGCDC 580 (929)
Q Consensus 523 EDd~C~VCg~~ds~ddndLLLCDG~CdRaFHq~CLdPPL~kesIPeGDe~WfCp~C~~ 580 (929)
+..+|.+|+..+ +++.||+||+ |+++||++||+|||. .+|.|+ |||+.|..
T Consensus 57 ~C~~C~~C~~~~--~~~~ll~Cd~-C~~~yH~~Cl~ppl~--~~P~g~--W~C~~C~~ 107 (114)
T 2kwj_A 57 ECKSCILCGTSE--NDDQLLFCDD-CDRGYHMYCLNPPVA--EPPEGS--WSCHLCWE 107 (114)
T ss_dssp GGCCCTTTTCCT--TTTTEEECSS-SCCEEETTTSSSCCS--SCCSSC--CCCHHHHH
T ss_pred ccCccCcccccC--CCCceEEcCC-CCccccccccCCCcc--CCCCCC--eECccccc
Confidence 345788998864 4589999995 999999999999997 599998 99999943
No 23
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=98.79 E-value=2.2e-09 Score=91.68 Aligned_cols=54 Identities=28% Similarity=0.644 Sum_probs=43.4
Q ss_pred cccccccccccccccCCCCCeEEecCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 002384 521 DSEDIYCAKCGSKDLSADNDIILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGCDCK 581 (929)
Q Consensus 521 d~EDd~C~VCg~~ds~ddndLLLCDG~CdRaFHq~CLdPPL~kesIPeGDe~WfCp~C~~K 581 (929)
..+..+|.+|+..+ ++..||+||+ |+++||+.|+++++. .+|.++ |||+.|..+
T Consensus 15 ~~~~~~C~~C~~~~--~~~~mi~CD~-C~~wfH~~Cv~~~~~--~~~~~~--w~C~~C~~~ 68 (75)
T 2k16_A 15 GNQIWICPGCNKPD--DGSPMIGCDD-CDDWYHWPCVGIMAA--PPEEMQ--WFCPKCANK 68 (75)
T ss_dssp SCEEECBTTTTBCC--SSCCEEECSS-SSSEEEHHHHTCSSC--CCSSSC--CCCTTTHHH
T ss_pred CCCCcCCCCCCCCC--CCCCEEEcCC-CCcccccccCCCCcc--CCCCCC--EEChhccCc
Confidence 34557899999884 3457999995 999999999999885 356666 999999554
No 24
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=98.72 E-value=1.4e-08 Score=91.76 Aligned_cols=59 Identities=27% Similarity=0.578 Sum_probs=45.6
Q ss_pred CCCCccccccccccccccccCCCCCeEEecCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 002384 516 SEGQIDSEDIYCAKCGSKDLSADNDIILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGCDCKVD 583 (929)
Q Consensus 516 sDGeid~EDd~C~VCg~~ds~ddndLLLCDG~CdRaFHq~CLdPPL~kesIPeGDe~WfCp~C~~K~d 583 (929)
.+|....+.+.| +|+..+ +++.||+|| .|+++||+.|++|++. .+|. . |||+.|..+..
T Consensus 20 edg~~~~d~vrC-iC~~~~--~~~~mi~Cd-~C~~w~H~~C~~~~~~--~~p~-~--w~C~~C~~~~~ 78 (98)
T 2lv9_A 20 EDGSYGTDVTRC-ICGFTH--DDGYMICCD-KCSVWQHIDCMGIDRQ--HIPD-T--YLCERCQPRNL 78 (98)
T ss_dssp TTCCCCCCBCCC-TTSCCS--CSSCEEEBT-TTCBEEETTTTTCCTT--SCCS-S--BCCTTTSSSCC
T ss_pred ccCCCCCCCEEe-ECCCcc--CCCcEEEcC-CCCCcCcCcCCCCCcc--CCCC-C--EECCCCcCCCC
Confidence 345555555678 898874 457899999 5999999999999875 4664 3 99999976643
No 25
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=98.71 E-value=6.9e-09 Score=94.12 Aligned_cols=58 Identities=31% Similarity=0.931 Sum_probs=46.8
Q ss_pred CCccccccccccccccccCCCCCeEEecCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 002384 518 GQIDSEDIYCAKCGSKDLSADNDIILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGCDCKV 582 (929)
Q Consensus 518 Geid~EDd~C~VCg~~ds~ddndLLLCDG~CdRaFHq~CLdPPL~kesIPeGDe~WfCp~C~~K~ 582 (929)
++.-.+..+|.+|+..+ +++.||+|| .|+++||++||+|||. .+|.++ |||+.|....
T Consensus 48 ~W~C~~C~~C~~C~~~~--~~~~ll~Cd-~C~~~yH~~Cl~ppl~--~~P~g~--W~C~~C~~c~ 105 (111)
T 2ysm_A 48 GWQCPECKVCQNCKQSG--EDSKMLVCD-TCDKGYHTFCLQPVMK--SVPTNG--WKCKNCRICI 105 (111)
T ss_dssp TCCCTTTCCCTTTCCCS--CCTTEEECS-SSCCEEEGGGSSSCCS--SCCSSC--CCCHHHHCCS
T ss_pred CccCCcCCcccccCccC--CCCCeeECC-CCCcHHhHHhcCCccc--cCCCCC--cCCcCCcCcC
Confidence 34445556788999875 346899999 5999999999999997 599987 9999996653
No 26
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=98.53 E-value=3.7e-08 Score=91.08 Aligned_cols=48 Identities=33% Similarity=1.014 Sum_probs=41.0
Q ss_pred ccccccccccccccCCCCCeEEec--CCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 002384 522 SEDIYCAKCGSKDLSADNDIILCD--GACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGCDCK 581 (929)
Q Consensus 522 ~EDd~C~VCg~~ds~ddndLLLCD--G~CdRaFHq~CLdPPL~kesIPeGDe~WfCp~C~~K 581 (929)
.++++|.+|+.+ ++||+|| + |+++||++||+ |. .+|.|+ |||+.|.+.
T Consensus 13 ~~~~~C~~C~~~-----G~ll~CD~~~-Cp~~fH~~Cl~--L~--~~P~g~--W~Cp~c~C~ 62 (107)
T 4gne_A 13 MHEDYCFQCGDG-----GELVMCDKKD-CPKAYHLLCLN--LT--QPPYGK--WECPWHQCD 62 (107)
T ss_dssp SSCSSCTTTCCC-----SEEEECCSTT-CCCEECTGGGT--CS--SCCSSC--CCCGGGBCT
T ss_pred CCCCCCCcCCCC-----CcEeEECCCC-CCcccccccCc--CC--cCCCCC--EECCCCCCC
Confidence 456799999965 6899999 6 99999999999 54 589998 999999754
No 27
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=98.44 E-value=1.8e-07 Score=84.80 Aligned_cols=57 Identities=26% Similarity=0.655 Sum_probs=44.9
Q ss_pred CccccccccccccccccCCCCCeEEecCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 002384 519 QIDSEDIYCAKCGSKDLSADNDIILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGCDCKV 582 (929)
Q Consensus 519 eid~EDd~C~VCg~~ds~ddndLLLCDG~CdRaFHq~CLdPPL~kesIPeGDe~WfCp~C~~K~ 582 (929)
....++++|.+|+..+ +.++||+|+ .|+++||++||+|++. .++.+. |+|+.|....
T Consensus 2 s~~~~~~~C~~C~~~g--~~~~ll~C~-~C~~~~H~~Cl~~~~~--~~~~~~--W~C~~C~~C~ 58 (111)
T 2ysm_A 2 SSGSSGANCAVCDSPG--DLLDQFFCT-TCGQHYHGMCLDIAVT--PLKRAG--WQCPECKVCQ 58 (111)
T ss_dssp CCCCCCSCBTTTCCCC--CTTTSEECS-SSCCEECTTTTTCCCC--TTTSTT--CCCTTTCCCT
T ss_pred CCCCCCCCCcCCCCCC--CCcCCeECC-CCCCCcChHHhCCccc--cccccC--ccCCcCCccc
Confidence 3455778999999885 335689999 5999999999999885 366666 9999996433
No 28
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=98.41 E-value=2.2e-08 Score=96.63 Aligned_cols=54 Identities=24% Similarity=0.557 Sum_probs=44.2
Q ss_pred ccccccccccccccCCCCCeEEecCCCCCccccccCCCCCCCC---C--CCCCCCCCCCCCCCCCCc
Q 002384 522 SEDIYCAKCGSKDLSADNDIILCDGACDRGFHQYCLEPPLLKE---D--IPPDDEGWLCPGCDCKVD 583 (929)
Q Consensus 522 ~EDd~C~VCg~~ds~ddndLLLCDG~CdRaFHq~CLdPPL~ke---s--IPeGDe~WfCp~C~~K~d 583 (929)
..+++|.+|+.+ ++||+|| .|+++||..||.|||... . .|.++ |+|+.|..+.-
T Consensus 61 g~~d~C~vC~~G-----G~LlcCD-~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~--W~C~~C~~~pl 119 (142)
T 2lbm_A 61 GMDEQCRWCAEG-----GNLICCD-FCHNAFCKKCILRNLGRKELSTIMDENNQ--WYCYICHPEPL 119 (142)
T ss_dssp SCBCSCSSSCCC-----SSEEECS-SSCCEEEHHHHHHHTCHHHHHHHHTSTTC--CCCTTTCCCTT
T ss_pred CCCCeecccCCC-----CcEEeCC-CCCCeeeHhhcCCCCChhhhhhcccCCCC--CEeecccCccH
Confidence 346899999988 6899999 699999999999998521 1 37777 99999987643
No 29
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=98.28 E-value=7e-07 Score=76.91 Aligned_cols=49 Identities=33% Similarity=0.837 Sum_probs=39.0
Q ss_pred cccccccccccccCCCCCeEEecCC--CC-CccccccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 002384 523 EDIYCAKCGSKDLSADNDIILCDGA--CD-RGFHQYCLEPPLLKEDIPPDDEGWLCPGCDCKV 582 (929)
Q Consensus 523 EDd~C~VCg~~ds~ddndLLLCDG~--Cd-RaFHq~CLdPPL~kesIPeGDe~WfCp~C~~K~ 582 (929)
+..+| +|++.. .+.||+|| . |. .+||+.|++.. .+|.+. |||+.|..+.
T Consensus 15 ~~~~C-~C~~~~---~g~MI~CD-~~~C~~~wfH~~Cvgl~----~~p~g~--w~Cp~C~~~~ 66 (71)
T 1wen_A 15 EPTYC-LCHQVS---YGEMIGCD-NPDCSIEWFHFACVGLT----TKPRGK--WFCPRCSQES 66 (71)
T ss_dssp SCCCS-TTCCCS---CSSEECCS-CSSCSCCCEETTTTTCS----SCCSSC--CCCTTTSSCS
T ss_pred CCCEE-ECCCCC---CCCEeEee-CCCCCCccEecccCCcC----cCCCCC--EECCCCCccc
Confidence 45688 899864 36899999 7 66 69999999953 477776 9999997654
No 30
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=98.27 E-value=9.9e-07 Score=79.66 Aligned_cols=50 Identities=32% Similarity=0.821 Sum_probs=39.4
Q ss_pred cccccccccccccCCCCCeEEecCC--CC-CccccccCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 002384 523 EDIYCAKCGSKDLSADNDIILCDGA--CD-RGFHQYCLEPPLLKEDIPPDDEGWLCPGCDCKVD 583 (929)
Q Consensus 523 EDd~C~VCg~~ds~ddndLLLCDG~--Cd-RaFHq~CLdPPL~kesIPeGDe~WfCp~C~~K~d 583 (929)
+..+| +|++.. .+.||+|| . |. .+||+.|++.. .+|.+. |||+.|..+..
T Consensus 35 e~~yC-iC~~~~---~g~MI~CD-~~dC~~~WfH~~CVgl~----~~p~g~--W~Cp~C~~~~~ 87 (91)
T 1weu_A 35 EPTYC-LCHQVS---YGEMIGCD-NPDCSIEWFHFACVGLT----TKPRGK--WFCPRCSQESG 87 (91)
T ss_dssp CCBCS-TTCCBC---CSCCCCCS-CSSCSCCCCCSTTTTCS----SCCCSS--CCCTTTCCCCS
T ss_pred CCcEE-ECCCCC---CCCEeEec-CCCCCCCCEecccCCcC----cCCCCC--EECcCccCcCC
Confidence 45678 999874 36899999 6 66 79999999953 367776 99999977643
No 31
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=98.24 E-value=2.2e-07 Score=77.39 Aligned_cols=48 Identities=33% Similarity=0.861 Sum_probs=37.5
Q ss_pred cccccccccccccCCCCCeEEecCC--CC-CccccccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 002384 523 EDIYCAKCGSKDLSADNDIILCDGA--CD-RGFHQYCLEPPLLKEDIPPDDEGWLCPGCDCK 581 (929)
Q Consensus 523 EDd~C~VCg~~ds~ddndLLLCDG~--Cd-RaFHq~CLdPPL~kesIPeGDe~WfCp~C~~K 581 (929)
+..+| +|++.. .+.||+|| . |. .+||+.|++.+ .+|.|. |||+.|..+
T Consensus 9 e~~~C-~C~~~~---~g~mi~CD-~cdC~~~wfH~~Cvgl~----~~p~g~--w~C~~C~~~ 59 (60)
T 2vnf_A 9 EPTYC-LCHQVS---YGEMIGCD-NPDCSIEWFHFACVGLT----TKPRGK--WFCPRCSQE 59 (60)
T ss_dssp CCEET-TTTEEC---CSEEEECS-CTTCSSCEEETGGGTCS----SCCSSC--CCCHHHHC-
T ss_pred CCCEE-ECCCcC---CCCEEEeC-CCCCCCceEehhcCCCC----cCCCCC--EECcCccCc
Confidence 34678 899874 37899999 6 44 89999999953 478887 999999654
No 32
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=98.16 E-value=4.3e-07 Score=75.64 Aligned_cols=48 Identities=33% Similarity=0.856 Sum_probs=38.1
Q ss_pred cccccccccccccCCCCCeEEecCC--CC-CccccccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 002384 523 EDIYCAKCGSKDLSADNDIILCDGA--CD-RGFHQYCLEPPLLKEDIPPDDEGWLCPGCDCK 581 (929)
Q Consensus 523 EDd~C~VCg~~ds~ddndLLLCDG~--Cd-RaFHq~CLdPPL~kesIPeGDe~WfCp~C~~K 581 (929)
+..+| +|++.. .+.||.|| . |+ .+||+.|++.. .+|.+. |||+.|..+
T Consensus 8 e~~yC-~C~~~~---~g~mi~CD-~~~C~~~wfH~~Cvgl~----~~p~~~--w~Cp~C~~~ 58 (59)
T 3c6w_A 8 EPTYC-LCHQVS---YGEMIGCD-NPDCPIEWFHFACVDLT----TKPKGK--WFCPRCVQE 58 (59)
T ss_dssp CCEET-TTTEEC---CSEEEECS-CTTCSSCEEETGGGTCS----SCCSSC--CCCHHHHCC
T ss_pred CCcEE-ECCCCC---CCCeeEee-CCCCCCCCEecccCCcc----cCCCCC--EECcCccCc
Confidence 44678 999874 36899999 6 66 69999999953 367776 999999654
No 33
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=98.11 E-value=9.5e-07 Score=79.63 Aligned_cols=47 Identities=28% Similarity=0.763 Sum_probs=37.0
Q ss_pred ccccccccccccccCCCCCeEEecCCCC---CccccccCCCCCCCCCCCCCCCCCCCCC-CC
Q 002384 522 SEDIYCAKCGSKDLSADNDIILCDGACD---RGFHQYCLEPPLLKEDIPPDDEGWLCPG-CD 579 (929)
Q Consensus 522 ~EDd~C~VCg~~ds~ddndLLLCDG~Cd---RaFHq~CLdPPL~kesIPeGDe~WfCp~-C~ 579 (929)
.+..+| +|+... .+.||+|| .|+ .+||+.|++.. .+|.+. |||+. |.
T Consensus 24 ~~~~yC-iC~~~~---~g~MI~CD-~c~C~~eWfH~~CVgl~----~~p~~~--W~Cp~cC~ 74 (90)
T 2jmi_A 24 QEEVYC-FCRNVS---YGPMVACD-NPACPFEWFHYGCVGLK----QAPKGK--WYCSKDCK 74 (90)
T ss_dssp CCSCCS-TTTCCC---SSSEECCC-SSSCSCSCEETTTSSCS----SCTTSC--CCSSHHHH
T ss_pred CCCcEE-EeCCCC---CCCEEEec-CCCCccccCcCccCCCC----cCCCCC--ccCChhhc
Confidence 345688 999863 35799999 577 89999999964 367776 99999 84
No 34
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=98.09 E-value=7.2e-07 Score=75.05 Aligned_cols=49 Identities=31% Similarity=0.716 Sum_probs=38.3
Q ss_pred cccccccccccccCCCCCeEEecCCCC---CccccccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 002384 523 EDIYCAKCGSKDLSADNDIILCDGACD---RGFHQYCLEPPLLKEDIPPDDEGWLCPGCDCKV 582 (929)
Q Consensus 523 EDd~C~VCg~~ds~ddndLLLCDG~Cd---RaFHq~CLdPPL~kesIPeGDe~WfCp~C~~K~ 582 (929)
+..+| +|++.. .+.||.|| .|+ .+||+.|++.. .+|.+. |||+.|..++
T Consensus 10 e~~yC-~C~~~~---~g~MI~CD-~c~C~~~WfH~~Cvgl~----~~p~~~--w~Cp~C~~~r 61 (62)
T 2g6q_A 10 EPTYC-LCNQVS---YGEMIGCD-NEQCPIEWFHFSCVSLT----YKPKGK--WYCPKCRGDN 61 (62)
T ss_dssp CCEET-TTTEEC---CSEEEECS-CTTCSSCEEETGGGTCS----SCCSSC--CCCHHHHTCC
T ss_pred CCcEE-ECCCCC---CCCeeeee-CCCCCcccEecccCCcC----cCCCCC--EECcCcccCC
Confidence 34678 999873 36899999 655 99999999964 367776 9999997654
No 35
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=98.04 E-value=3.6e-07 Score=87.08 Aligned_cols=53 Identities=26% Similarity=0.637 Sum_probs=42.4
Q ss_pred ccccccccccccccCCCCCeEEecCCCCCccccccCCCCCCCC---CC--CCCCCCCCCCCCCCCC
Q 002384 522 SEDIYCAKCGSKDLSADNDIILCDGACDRGFHQYCLEPPLLKE---DI--PPDDEGWLCPGCDCKV 582 (929)
Q Consensus 522 ~EDd~C~VCg~~ds~ddndLLLCDG~CdRaFHq~CLdPPL~ke---sI--PeGDe~WfCp~C~~K~ 582 (929)
..+.+|.+|+.+ +++|+|| .|+++||..|+.|+|... .+ |.+. |+|..|..+.
T Consensus 55 g~~~~C~vC~dG-----G~LlcCd-~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~--W~C~~C~~~p 112 (129)
T 3ql9_A 55 GMDEQCRWCAEG-----GNLICCD-FCHNAFCKKCILRNLGRRELSTIMDENNQ--WYCYICHPEP 112 (129)
T ss_dssp SCBSSCTTTCCC-----SEEEECS-SSSCEEEHHHHHHHTCHHHHHHHTCTTSC--CCCTTTCCGG
T ss_pred CCCCcCeecCCC-----CeeEecC-CCchhhhHHHhCCCcchhHHHHhccCCCC--eEcCCcCCHH
Confidence 355789999987 6899999 699999999999985311 23 6666 9999997764
No 36
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=98.04 E-value=1.2e-06 Score=72.74 Aligned_cols=55 Identities=29% Similarity=0.616 Sum_probs=41.3
Q ss_pred ccccccccccccccCCCCCeEEecCCCCCccccccCCCCCCCCCCC-CCCCCCCCCCCCCCC
Q 002384 522 SEDIYCAKCGSKDLSADNDIILCDGACDRGFHQYCLEPPLLKEDIP-PDDEGWLCPGCDCKV 582 (929)
Q Consensus 522 ~EDd~C~VCg~~ds~ddndLLLCDG~CdRaFHq~CLdPPL~kesIP-eGDe~WfCp~C~~K~ 582 (929)
.+..+|.+|++.. .+...||.|| .|..+||..|++..... +. .. .|+|+.|..+.
T Consensus 4 ~e~~~C~~C~~~~-~~~~~mI~Cd-~C~~WfH~~Cvgl~~~~--~~~~~--~~~C~~C~~k~ 59 (64)
T 1we9_A 4 GSSGQCGACGESY-AADEFWICCD-LCEMWFHGKCVKITPAR--AEHIK--QYKCPSCSNKS 59 (64)
T ss_dssp SSCCCCSSSCCCC-CSSSCEEECS-SSCCEEETTTTTCCTTG--GGGCS--SCCCHHHHTTT
T ss_pred CCCCCCCCCCCcc-CCCCCEEEcc-CCCCCCCccccCcChhH--hcCCC--cEECCCCcCcC
Confidence 3457899999874 2346899999 59999999999986431 21 13 49999997764
No 37
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=97.78 E-value=6.9e-06 Score=70.03 Aligned_cols=54 Identities=30% Similarity=0.669 Sum_probs=39.2
Q ss_pred cccccccccccccccCCCCCeEEecCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 002384 521 DSEDIYCAKCGSKDLSADNDIILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGCDCK 581 (929)
Q Consensus 521 d~EDd~C~VCg~~ds~ddndLLLCDG~CdRaFHq~CLdPPL~kesIPeGDe~WfCp~C~~K 581 (929)
+.+..+| +|+... .++..||.|| .|..+||..|++..... .+| . .|+|+.|..+
T Consensus 13 ~~~~~~C-~C~~~~-~~g~~mI~Cd-~C~~W~H~~Cvg~~~~~-~~~-~--~~~C~~C~~~ 66 (72)
T 1wee_A 13 DNWKVDC-KCGTKD-DDGERMLACD-GCGVWHHTRCIGINNAD-ALP-S--KFLCFRCIEL 66 (72)
T ss_dssp CSSEECC-TTCCCS-CCSSCEEECS-SSCEEEETTTTTCCTTS-CCC-S--CCCCHHHHHH
T ss_pred CCcceEe-eCCCcc-CCCCcEEECC-CCCCccCCeeeccCccc-cCC-C--cEECCCccCC
Confidence 3445789 799874 1224699999 59999999999986432 344 3 3999999654
No 38
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=97.75 E-value=1e-05 Score=69.07 Aligned_cols=51 Identities=22% Similarity=0.482 Sum_probs=39.4
Q ss_pred cccccccccccccccCCCCCeEEecCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCC
Q 002384 521 DSEDIYCAKCGSKDLSADNDIILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGCDC 580 (929)
Q Consensus 521 d~EDd~C~VCg~~ds~ddndLLLCDG~CdRaFHq~CLdPPL~kesIPeGDe~WfCp~C~~ 580 (929)
..+..+| +|+... +++.||.|| .|..+||..|++.... .+| + .|+|+.|..
T Consensus 16 ~~~~~~C-iC~~~~--~~~~MIqCd-~C~~WfH~~Cvgi~~~--~~~-~--~~~C~~C~~ 66 (68)
T 3o70_A 16 FQGLVTC-FCMKPF--AGRPMIECN-ECHTWIHLSCAKIRKS--NVP-E--VFVCQKCRD 66 (68)
T ss_dssp TTTCCCS-TTCCCC--TTCCEEECT-TTCCEEETTTTTCCTT--SCC-S--SCCCHHHHT
T ss_pred CCCceEe-ECCCcC--CCCCEEECC-CCCccccccccCcCcc--cCC-C--cEECCCCCC
Confidence 3445789 999874 356799999 5999999999998653 355 3 499999954
No 39
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=97.65 E-value=4e-06 Score=80.70 Aligned_cols=54 Identities=24% Similarity=0.633 Sum_probs=38.9
Q ss_pred cccccccccccccCCCCCeEEecCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 002384 523 EDIYCAKCGSKDLSADNDIILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGCDCKV 582 (929)
Q Consensus 523 EDd~C~VCg~~ds~ddndLLLCDG~CdRaFHq~CLdPPL~kesIPeGDe~WfCp~C~~K~ 582 (929)
+..+| +|+..+ .+.+.||.|| .|.++||..|++..... ....+. |+|+.|..+.
T Consensus 7 ~~~~C-~C~~~~-~~~~~mi~Cd-~C~~WfH~~Cv~~~~~~-~~~~~~--~~C~~C~~~~ 60 (174)
T 2ri7_A 7 TKLYC-ICKTPE-DESKFYIGCD-RCQNWYHGRCVGILQSE-AELIDE--YVCPQCQSTE 60 (174)
T ss_dssp CCEET-TTTEEC-CTTSCEEECT-TTCCEEEHHHHTCCHHH-HTTCSS--CCCHHHHHHH
T ss_pred CCcEe-eCCCCC-CCCCCEeECC-CCCchhChhhcCCchhh-ccCccC--eecCCCcchh
Confidence 45789 999874 2346799999 59999999999864321 112333 9999996643
No 40
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=97.63 E-value=1.4e-05 Score=73.55 Aligned_cols=57 Identities=26% Similarity=0.634 Sum_probs=41.2
Q ss_pred ccccccccccc-----CCCCCeEEecCCCCCccccccCCCCCCC-CCCCCCCCCCCCCCCCCCCch
Q 002384 525 IYCAKCGSKDL-----SADNDIILCDGACDRGFHQYCLEPPLLK-EDIPPDDEGWLCPGCDCKVDC 584 (929)
Q Consensus 525 d~C~VCg~~ds-----~ddndLLLCDG~CdRaFHq~CLdPPL~k-esIPeGDe~WfCp~C~~K~d~ 584 (929)
++|.+|..++. ...+.||+|++ |++.||++||.+++.. ..+|.+. |+|+.|.....+
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~-C~~~~H~~Cl~~~~~~~~~~~~~~--W~C~~C~~C~~C 64 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCAD-CGRSGHPTCLQFTLNMTEAVKTYK--WQCIECKSCILC 64 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSS-SCCEECTTTTTCCHHHHHHHHHTT--CCCGGGCCCTTT
T ss_pred CcCccCCCCccccccCCCCCCCeEeCC-CCCccchhhCCChhhhhhccCCCc--cCccccCccCcc
Confidence 47999987642 23469999995 9999999999987421 1256676 999999544333
No 41
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.59 E-value=1.2e-05 Score=69.01 Aligned_cols=48 Identities=29% Similarity=0.778 Sum_probs=36.7
Q ss_pred cccccccccccccCCCCCeEEecCCCC---CccccccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 002384 523 EDIYCAKCGSKDLSADNDIILCDGACD---RGFHQYCLEPPLLKEDIPPDDEGWLCPGCDCK 581 (929)
Q Consensus 523 EDd~C~VCg~~ds~ddndLLLCDG~Cd---RaFHq~CLdPPL~kesIPeGDe~WfCp~C~~K 581 (929)
+..+| +|+... .+.||.||+ |+ .+||+.|++.. ..|.+. |||+.|..+
T Consensus 5 ~~~yC-~C~~~~---~g~MI~CD~-cdC~~~WfH~~Cvgl~----~~p~~~--w~Cp~C~~~ 55 (70)
T 1x4i_A 5 SSGYC-ICNQVS---YGEMVGCDN-QDCPIEWFHYGCVGLT----EAPKGK--WYCPQCTAA 55 (70)
T ss_dssp CCCCS-TTSCCC---CSSEECCSC-TTCSCCCEEHHHHTCS----SCCSSC--CCCHHHHHH
T ss_pred CCeEE-EcCCCC---CCCEeEeCC-CCCCccCCcccccccC----cCCCCC--EECCCCCcc
Confidence 34678 598863 358999994 75 89999999964 257666 999999544
No 42
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=97.56 E-value=4.1e-05 Score=64.87 Aligned_cols=52 Identities=25% Similarity=0.641 Sum_probs=36.7
Q ss_pred cccccccccccccCCCCCeEEecC-CCCCccccccCCCCCC---CCCCCCCCCCCCCCCCCC
Q 002384 523 EDIYCAKCGSKDLSADNDIILCDG-ACDRGFHQYCLEPPLL---KEDIPPDDEGWLCPGCDC 580 (929)
Q Consensus 523 EDd~C~VCg~~ds~ddndLLLCDG-~CdRaFHq~CLdPPL~---kesIPeGDe~WfCp~C~~ 580 (929)
+..+| +|+... +.+.||.||+ .|..+||..|++..-. ...+|. .|||+.|+.
T Consensus 9 ~~v~C-~C~~~~--~~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~---~~~C~~Cr~ 64 (68)
T 2rsd_A 9 AKVRC-ICSSTM--VNDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPP---VFYCELCRL 64 (68)
T ss_dssp CEECC-TTCCCS--CCSCEEECSCTTTCEEEETTTSCCCSSTTSCCCCCS---SCCCHHHHH
T ss_pred CCEEe-ECCCCc--CCCCEEEECCCCCCCeEchhhCCCCcccccccCCCC---cEECcCccC
Confidence 34678 898764 4578999993 4999999999986432 112232 499999953
No 43
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=97.51 E-value=2.4e-05 Score=67.86 Aligned_cols=53 Identities=25% Similarity=0.557 Sum_probs=39.4
Q ss_pred cccccccccccccCCCCCeEEec--CCCCCccccccCCCCCCCC----CCCCCCCCCCCCCCCCCC
Q 002384 523 EDIYCAKCGSKDLSADNDIILCD--GACDRGFHQYCLEPPLLKE----DIPPDDEGWLCPGCDCKV 582 (929)
Q Consensus 523 EDd~C~VCg~~ds~ddndLLLCD--G~CdRaFHq~CLdPPL~ke----sIPeGDe~WfCp~C~~K~ 582 (929)
+..+| +|+..+ +.+.||.|| . |..+||..|++.+-... .+| ..|||+.|..++
T Consensus 15 ~~~~C-iC~~~~--~~g~MI~CD~~~-C~~W~H~~CVgi~~~~~~~~~~~~---~~~~C~~C~~~~ 73 (78)
T 1wew_A 15 IKVRC-VCGNSL--ETDSMIQCEDPR-CHVWQHVGCVILPDKPMDGNPPLP---ESFYCEICRLTS 73 (78)
T ss_dssp CCCCC-SSCCCC--CCSCEEECSSTT-TCCEEEHHHHSCCCTTTCSCSCSC---SSCCCHHHHHCC
T ss_pred CCEEe-ECCCcC--CCCCEEEECCcc-CCccccCEEEccccccccccccCC---CCEECCCCCccc
Confidence 44678 899984 457999999 7 99999999999764311 122 249999996543
No 44
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=97.46 E-value=9e-06 Score=69.75 Aligned_cols=55 Identities=24% Similarity=0.670 Sum_probs=38.6
Q ss_pred ccccccccccccccCCCCCeEEecCCCCCccccccCCCCCCCC-CC--CCCCCCCCCCCCCCCC
Q 002384 522 SEDIYCAKCGSKDLSADNDIILCDGACDRGFHQYCLEPPLLKE-DI--PPDDEGWLCPGCDCKV 582 (929)
Q Consensus 522 ~EDd~C~VCg~~ds~ddndLLLCDG~CdRaFHq~CLdPPL~ke-sI--PeGDe~WfCp~C~~K~ 582 (929)
.+..+| +|++.. ++..||.|| .|..+||..|++...... .+ +.. .|+|+.|..+.
T Consensus 14 ~~~~~C-~C~~~~--~~~~MI~Cd-~C~~WfH~~Cvgl~~~~~~~l~~~~~--~~~C~~C~~~~ 71 (76)
T 1wem_A 14 PNALYC-ICRQPH--NNRFMICCD-RCEEWFHGDCVGISEARGRLLERNGE--DYICPNCTILS 71 (76)
T ss_dssp TTCCCS-TTCCCC--CSSCEEECS-SSCCEEEHHHHSCCHHHHHHHHHHTC--CCCCHHHHHHS
T ss_pred CCCCEE-ECCCcc--CCCCEEEeC-CCCCcEeCeEEccchhhhhhccCCCC--eEECcCCcCcc
Confidence 345678 899875 346899999 599999999999753200 00 123 49999996543
No 45
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=97.46 E-value=2.6e-05 Score=67.59 Aligned_cols=54 Identities=24% Similarity=0.593 Sum_probs=38.9
Q ss_pred cccccccccccccCCCCCeEEecCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 002384 523 EDIYCAKCGSKDLSADNDIILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGCDCKV 582 (929)
Q Consensus 523 EDd~C~VCg~~ds~ddndLLLCDG~CdRaFHq~CLdPPL~kesIPeGDe~WfCp~C~~K~ 582 (929)
+..+| +|+... .+...||.|| .|..+||..|++..... ..... .|+|+.|....
T Consensus 11 ~~~~C-~C~~~~-d~~~~MIqCd-~C~~WfH~~Cvgl~~~~-~~~~~--~~~C~~C~~~~ 64 (79)
T 1wep_A 11 VPVYC-LCRQPY-NVNHFMIECG-LCQDWFHGSCVGIEEEN-AVDID--IYHCPDCEAVF 64 (79)
T ss_dssp CCCCS-TTSCSC-CSSSCEEEBT-TTCCEEEHHHHTCCHHH-HTTCS--BBCCTTTTTTS
T ss_pred CccEE-EcCCcc-CCCCceEEcC-CCCCcEEeeecCccccc-ccCCC--eEECCCccccc
Confidence 34678 999874 1257899999 59999999999975421 11112 49999997654
No 46
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=97.34 E-value=1.9e-05 Score=72.35 Aligned_cols=56 Identities=23% Similarity=0.552 Sum_probs=40.3
Q ss_pred ccccccccccc----CCCCCeEEecCCCCCccccccCCC--CCCCCCCCCCCCCCCCCCCCCCCch
Q 002384 525 IYCAKCGSKDL----SADNDIILCDGACDRGFHQYCLEP--PLLKEDIPPDDEGWLCPGCDCKVDC 584 (929)
Q Consensus 525 d~C~VCg~~ds----~ddndLLLCDG~CdRaFHq~CLdP--PL~kesIPeGDe~WfCp~C~~K~d~ 584 (929)
.+|.+|...+. ...+.||+|++ |++.||++||++ ++. ..++.++ |+|+.|.....+
T Consensus 6 ~~C~~C~~~~~~~~~g~~~~Ll~C~~-C~~~~H~~Cl~~~~~~~-~~~~~~~--W~C~~C~~C~vC 67 (112)
T 3v43_A 6 PICSFCLGTKEQNREKKPEELISCAD-CGNSGHPSCLKFSPELT-VRVKALR--WQCIECKTCSSC 67 (112)
T ss_dssp SSBTTTCCCTTCCTTSCCCCCEECTT-TCCEECHHHHTCCHHHH-HHHHTSC--CCCTTTCCBTTT
T ss_pred ccccccCCchhhCcCCCchhceEhhh-cCCCCCCchhcCCHHHH-HHhhccc--cccccCCccccc
Confidence 57999987531 13468999995 999999999975 232 1356676 999999644444
No 47
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=97.33 E-value=6.9e-05 Score=60.47 Aligned_cols=46 Identities=24% Similarity=0.600 Sum_probs=35.8
Q ss_pred cccccccccccCCCCCeEEecCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCC
Q 002384 525 IYCAKCGSKDLSADNDIILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGCD 579 (929)
Q Consensus 525 d~C~VCg~~ds~ddndLLLCDG~CdRaFHq~CLdPPL~kesIPeGDe~WfCp~C~ 579 (929)
.+| +|+... +++.||.|| .|..+||..|++.... .+|. .|+|+.|.
T Consensus 5 ~~C-~C~~~~--~~~~MI~Cd-~C~~W~H~~Cvgi~~~--~~~~---~~~C~~C~ 50 (52)
T 3o7a_A 5 VTC-FCMKPF--AGRPMIECN-ECHTWIHLSCAKIRKS--NVPE---VFVCQKCR 50 (52)
T ss_dssp BCS-TTCCBC--TTCCEEECT-TTCCEEETTTTTCCGG--GCCS---SCCCHHHH
T ss_pred eEE-EeCCcC--CCCCEEEcC-CCCccccccccCCCcc--cCCC---cEECcCCC
Confidence 456 798874 456999999 5999999999998653 3442 49999984
No 48
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=97.26 E-value=3.9e-05 Score=70.20 Aligned_cols=55 Identities=27% Similarity=0.553 Sum_probs=39.3
Q ss_pred cccccccccccCCCCCeEEec-CCCCCccccccCCCCCCC-CC---CCCCCCCCCCCCCCCCCc
Q 002384 525 IYCAKCGSKDLSADNDIILCD-GACDRGFHQYCLEPPLLK-ED---IPPDDEGWLCPGCDCKVD 583 (929)
Q Consensus 525 d~C~VCg~~ds~ddndLLLCD-G~CdRaFHq~CLdPPL~k-es---IPeGDe~WfCp~C~~K~d 583 (929)
..|.+|++.. .+.+.||.|| + |..+||..|++..... .. .|.+. |+|+.|..+..
T Consensus 4 ~~C~iC~~p~-~~~~~mi~Cdd~-C~~WfH~~CVglt~~~~~~i~~~~~~~--~~Cp~C~~~~~ 63 (105)
T 2xb1_A 4 YPCGACRSEV-NDDQDAILCEAS-CQKWFHRECTGMTESAYGLLTTEASAV--WACDLCLKTKE 63 (105)
T ss_dssp CBCTTTCSBC-CTTSCEEECTTT-TCCEEEGGGTTCCHHHHHHHHHCTTEE--ECCHHHHHTTT
T ss_pred CCCCCCCCcc-CCCCCEEEecCC-cccccccccCCcCHHHHHhhccCCCCC--EECccccCcCC
Confidence 4699999984 2346788897 6 9999999999975310 00 14444 99999976654
No 49
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=97.26 E-value=4.8e-05 Score=65.41 Aligned_cols=54 Identities=28% Similarity=0.631 Sum_probs=38.5
Q ss_pred ccccccccccccccCCCCCeEEecCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 002384 522 SEDIYCAKCGSKDLSADNDIILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGCDCK 581 (929)
Q Consensus 522 ~EDd~C~VCg~~ds~ddndLLLCDG~CdRaFHq~CLdPPL~kesIPeGDe~WfCp~C~~K 581 (929)
.+..+| +|+... .+++.||.|| .|..+||..|++.... .++.. ..|+|+.|..+
T Consensus 8 ~~~~yC-iC~~~~-~~~~~MI~Cd-~C~~WfH~~Cvg~~~~--~~~~~-~~~~C~~C~~~ 61 (75)
T 3kqi_A 8 TVPVYC-VCRLPY-DVTRFMIECD-ACKDWFHGSCVGVEEE--EAPDI-DIYHCPNCEKT 61 (75)
T ss_dssp CCCEET-TTTEEC-CTTSCEEECT-TTCCEEEHHHHTCCTT--TGGGB-SSCCCHHHHHH
T ss_pred CCeeEE-ECCCcC-CCCCCEEEcC-CCCCCEeccccccccc--ccCCC-CEEECCCCccc
Confidence 344677 899874 2346899999 6999999999997543 22222 24999999543
No 50
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=97.23 E-value=3.2e-05 Score=65.73 Aligned_cols=53 Identities=26% Similarity=0.580 Sum_probs=37.9
Q ss_pred cccccccccccccCCCCCeEEec-CCCCCccccccCCCCCCCC----CCCCCCCCCCCCCCC
Q 002384 523 EDIYCAKCGSKDLSADNDIILCD-GACDRGFHQYCLEPPLLKE----DIPPDDEGWLCPGCD 579 (929)
Q Consensus 523 EDd~C~VCg~~ds~ddndLLLCD-G~CdRaFHq~CLdPPL~ke----sIPeGDe~WfCp~C~ 579 (929)
....|.+|++.. .++..||.|| + |..+||..|++.....- .-|.+. |+|+.|.
T Consensus 7 ~~~~C~~C~~p~-~~~~~mI~CD~~-C~~WfH~~Cvglt~~~~~~l~~e~~~~--w~C~~C~ 64 (65)
T 2vpb_A 7 PVYPCGICTNEV-NDDQDAILCEAS-CQKWFHRICTGMTETAYGLLTAEASAV--WGCDTCM 64 (65)
T ss_dssp --CBCTTTCSBC-CTTSCEEEBTTT-TCCEEEHHHHTCCHHHHHHHHHCTTEE--ECCHHHH
T ss_pred CcCcCccCCCcc-CCCCCeEecccC-ccccCchhccCCCHHHHHHhhccCCCc--EECcCcc
Confidence 345799999985 3456899999 7 99999999999743100 024444 9999984
No 51
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=97.12 E-value=8.6e-05 Score=60.01 Aligned_cols=48 Identities=27% Similarity=0.618 Sum_probs=35.3
Q ss_pred ccccccccccCCCCCeEEec-CCCCCccccccCCCCCCCCCCCCCCCCCCCCCCC
Q 002384 526 YCAKCGSKDLSADNDIILCD-GACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGCD 579 (929)
Q Consensus 526 ~C~VCg~~ds~ddndLLLCD-G~CdRaFHq~CLdPPL~kesIPeGDe~WfCp~C~ 579 (929)
.|.+|++.. .++..||.|| + |..+||..|++.... ..... .|+|+.|.
T Consensus 4 ~cc~C~~p~-~~~~~mI~Cd~~-C~~WfH~~Cvgl~~~--~~~~~--~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPC-KDKVDWVQCDGG-CDEWFHQVCVGVSPE--MAENE--DYICINCA 52 (52)
T ss_dssp SCTTCCCCC-CTTCCEEECTTT-TCCEEETTTTTCCHH--HHHHS--CCCCSCC-
T ss_pred cCCCCcCcc-CCCCcEEEeCCC-CCccCcccccCCCcc--ccCCC--CEECCCCC
Confidence 477899875 3356799999 6 999999999997532 11123 49999994
No 52
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=96.93 E-value=0.00015 Score=65.60 Aligned_cols=53 Identities=28% Similarity=0.693 Sum_probs=38.7
Q ss_pred cccccccccccccCCCCCeEEecCCCCCccccccCCCC--------CCCCCCCCCCCCCCCCCCC
Q 002384 523 EDIYCAKCGSKDLSADNDIILCDGACDRGFHQYCLEPP--------LLKEDIPPDDEGWLCPGCD 579 (929)
Q Consensus 523 EDd~C~VCg~~ds~ddndLLLCDG~CdRaFHq~CLdPP--------L~kesIPeGDe~WfCp~C~ 579 (929)
.|.+|.||.... .+.++-|. .|.|.||..||.++ +..-..-..+.+|.|+.|.
T Consensus 14 ~D~~C~VC~~~t---~~~l~pCR-vC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~Ce 74 (89)
T 1wil_A 14 NDEMCDVCEVWT---AESLFPCR-VCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCD 74 (89)
T ss_dssp CSCCCTTTCCCC---SSCCSSCS-SSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTC
T ss_pred CCcccCcccccc---ccceeccc-cccccccHhhcccccccccHHHHHHHHccCCCCCccccccc
Confidence 568999999874 47899999 79999999999985 1100111223459999993
No 53
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=96.84 E-value=0.00056 Score=68.30 Aligned_cols=57 Identities=21% Similarity=0.514 Sum_probs=39.1
Q ss_pred cccccccccccCCC--CCeEEecCCCCCccccccCCCCCC---C-CCCCCCCCCCCCCCCCCCCc
Q 002384 525 IYCAKCGSKDLSAD--NDIILCDGACDRGFHQYCLEPPLL---K-EDIPPDDEGWLCPGCDCKVD 583 (929)
Q Consensus 525 d~C~VCg~~ds~dd--ndLLLCDG~CdRaFHq~CLdPPL~---k-esIPeGDe~WfCp~C~~K~d 583 (929)
.+|.+|++....++ ..||.|| .|.++||..|++..-. . ..+|.. ..|+|+.|..+..
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd-~C~~W~H~~Cvgi~~~~~e~~~~~pe~-~~y~Cp~C~~~~~ 65 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCG-KCDRWVHSKCENLSDEMYEILSNLPES-VAYTCVNCTERHP 65 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECT-TTCCEEEGGGSSCCHHHHHHHHHSHHH-HCCCCTTTCCSSS
T ss_pred CcCCCCcCccCCcccCCCeEECC-CCCcccchhccccCHHHHHHhhcCCCC-CeeECcCCCCCCC
Confidence 47999999863221 2499999 5999999999987420 0 012221 1499999988765
No 54
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Probab=96.48 E-value=0.00086 Score=76.15 Aligned_cols=41 Identities=24% Similarity=0.519 Sum_probs=29.6
Q ss_pred CCCCeEEecCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 002384 537 ADNDIILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGCDCK 581 (929)
Q Consensus 537 ddndLLLCDG~CdRaFHq~CLdPPL~kesIPeGDe~WfCp~C~~K 581 (929)
++..||.|| .|..+||..|++..-.. .-..+ .|+||.|...
T Consensus 54 ~~~~mI~CD-~C~~WfH~~CVgi~~~~-a~~~~--~y~Cp~C~~~ 94 (528)
T 3pur_A 54 NDFQWIGCD-SCQTWYHFLCSGLEQFE-YYLYE--KFFCPKCVPH 94 (528)
T ss_dssp STTSEEECT-TTCCEEEGGGTTCCGGG-TTTEE--ECCCTTTHHH
T ss_pred cCCCEEECC-CCCcCCCCcCCCCChhH-hcCCC--eEECcCCcCC
Confidence 345899999 59999999999975421 11112 4999999653
No 55
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=96.15 E-value=0.0005 Score=77.20 Aligned_cols=53 Identities=25% Similarity=0.569 Sum_probs=37.4
Q ss_pred cccccccccccccCCCCCeEEecCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 002384 523 EDIYCAKCGSKDLSADNDIILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGCDCK 581 (929)
Q Consensus 523 EDd~C~VCg~~ds~ddndLLLCDG~CdRaFHq~CLdPPL~kesIPeGDe~WfCp~C~~K 581 (929)
+..+| +|+... ...+.||.|| .|..+||..|++..-.. .... ..|+|+.|..+
T Consensus 36 ~~~yC-~C~~~~-d~~~~MIqCd-~C~~WfH~~Cvgl~~~~--~~~~-~~~~C~~C~~~ 88 (488)
T 3kv5_D 36 PPVYC-VCRQPY-DVNRFMIECD-ICKDWFHGSCVGVEEHH--AVDI-DLYHCPNCAVL 88 (488)
T ss_dssp CCEET-TTTEEC-CTTSCEEEBT-TTCCEEEHHHHTCCGGG--GGGE-EEBCCHHHHHH
T ss_pred CCeEE-eCCCcC-CCCCCeEEcc-CCCCceeeeecCcCccc--ccCC-CEEECCCCcCC
Confidence 34667 999874 1257899999 59999999999975321 1111 24999999653
No 56
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=95.58 E-value=0.00089 Score=74.61 Aligned_cols=51 Identities=27% Similarity=0.615 Sum_probs=36.1
Q ss_pred cccccccccccCCCCCeEEecCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 002384 525 IYCAKCGSKDLSADNDIILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGCDCK 581 (929)
Q Consensus 525 d~C~VCg~~ds~ddndLLLCDG~CdRaFHq~CLdPPL~kesIPeGDe~WfCp~C~~K 581 (929)
.+| +|+... .+++.||.|| .|..+||..|++..-.. .+.. ..|+|+.|..+
T Consensus 6 ~yC-iC~~~~-d~~~~MIqCD-~C~~WfH~~CVgi~~~~--~~~~-~~y~C~~C~~~ 56 (447)
T 3kv4_A 6 VYC-LCRLPY-DVTRFMIECD-MCQDWFHGSCVGVEEEK--AADI-DLYHCPNCEVL 56 (447)
T ss_dssp EET-TTTEEC-CTTSCEEECT-TTCCEEEHHHHTCCHHH--HTTE-EECCCHHHHHH
T ss_pred eEE-eCCCcC-CCCCCeEEcC-CCCcccccccCCcCccc--ccCC-CEEECCCCccc
Confidence 456 999874 2357899999 69999999999964321 1111 24999999553
No 57
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=94.08 E-value=0.014 Score=52.95 Aligned_cols=40 Identities=23% Similarity=0.589 Sum_probs=28.9
Q ss_pred CCeEEecCCCCCccccccCCCCCCCCCCCCCC--CCCCCCCCCCC
Q 002384 539 NDIILCDGACDRGFHQYCLEPPLLKEDIPPDD--EGWLCPGCDCK 581 (929)
Q Consensus 539 ndLLLCDG~CdRaFHq~CLdPPL~kesIPeGD--e~WfCp~C~~K 581 (929)
..||.|+ .|..+||..|+.++.. .++..+ +.|+|+.|...
T Consensus 73 ~~m~~C~-~C~~~~H~~C~~~~~~--~~~~~~~~~~~~C~~C~~~ 114 (117)
T 4bbq_A 73 KKLMECC-ICNEIVHPGCLQMDGE--GLLNEELPNCWECPKCYQE 114 (117)
T ss_dssp GSCEEET-TTCCEECGGGCCSCCC--CEECSSSSSEEECTTTC--
T ss_pred cceEEee-ecCCeEECCCCCCCcc--ccccccCCCCeECCCCcCC
Confidence 4689999 6999999999998753 232221 24999999754
No 58
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=92.57 E-value=0.03 Score=50.08 Aligned_cols=40 Identities=23% Similarity=0.588 Sum_probs=28.2
Q ss_pred CeEEecCCCCCccccccCCCCCC----CCCCCCCCCCCCCCCCCCC
Q 002384 540 DIILCDGACDRGFHQYCLEPPLL----KEDIPPDDEGWLCPGCDCK 581 (929)
Q Consensus 540 dLLLCDG~CdRaFHq~CLdPPL~----kesIPeGDe~WfCp~C~~K 581 (929)
.||.|| .|..|||..|....-. ...+|.. ..|.|+.|..+
T Consensus 1 ~mi~c~-~c~~w~H~~c~~~~~~~~~~l~~lp~~-~~~~c~~C~~~ 44 (140)
T 2ku7_A 1 SMMQCG-KCDRWVHSKCENLSDEMYEILSNLPES-VAYTCVNCTER 44 (140)
T ss_dssp CCCCCS-CCSSCHHHHHCCCCHHHHHHHHSSCTT-TTCCSSCCTTT
T ss_pred Cccccc-cCCCccCCcccccCHHHHHHHhhcccc-ceeeCcccccc
Confidence 389999 5999999999885310 0124533 25999999664
No 59
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=80.46 E-value=0.72 Score=42.75 Aligned_cols=39 Identities=26% Similarity=0.649 Sum_probs=29.8
Q ss_pred ccccccccccCCCCCeEEecCCCCCccccccCCCCCCCCCCCCCCCCCCC
Q 002384 526 YCAKCGSKDLSADNDIILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLC 575 (929)
Q Consensus 526 ~C~VCg~~ds~ddndLLLCDG~CdRaFHq~CLdPPL~kesIPeGDe~WfC 575 (929)
.|.+|++.. .+.|. .|+.+||..|+.+.|.. .+.. +|+|
T Consensus 60 ~C~~C~k~~------~~~C~-~Cp~sfC~~c~~g~l~~--~~~~--~~~c 98 (107)
T 4gne_A 60 QCDECSSAA------VSFCE-FCPHSFCKDHEKGALVP--SALE--GRLC 98 (107)
T ss_dssp BCTTTCSBC------CEECS-SSSCEECTTTCTTSCEE--CTTT--TCEE
T ss_pred CCCcCCCCC------CcCcC-CCCcchhhhccCCccee--cCCC--Ccee
Confidence 466777652 38899 79999999999999963 3444 3998
No 60
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=77.09 E-value=0.54 Score=40.89 Aligned_cols=53 Identities=25% Similarity=0.466 Sum_probs=34.0
Q ss_pred ccccccccccccccCCCCCeEE-ec--CCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 002384 522 SEDIYCAKCGSKDLSADNDIIL-CD--GACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGCDCKV 582 (929)
Q Consensus 522 ~EDd~C~VCg~~ds~ddndLLL-CD--G~CdRaFHq~CLdPPL~kesIPeGDe~WfCp~C~~K~ 582 (929)
.+...|.||..... .++.+++ |. | +...||..|+..-|.. .+. ..||.|....
T Consensus 13 ~~~~~C~IC~~~~~-~~~~l~~pC~C~G-s~h~fH~~Cl~~Wl~~----~~~--~~CplCr~~~ 68 (80)
T 2d8s_A 13 SSQDICRICHCEGD-DESPLITPCHCTG-SLHFVHQACLQQWIKS----SDT--RCCELCKYEF 68 (80)
T ss_dssp TTSCCCSSSCCCCC-SSSCEECSSSCCS-SSCCEETTHHHHHHHH----HCC--SBCSSSCCBC
T ss_pred CCCCCCeEcCcccc-CCCeeEeccccCC-cCCeeCHHHHHHHHhh----CCC--CCCCCCCCee
Confidence 34568999997542 2344443 32 1 2389999999987642 122 6899997654
No 61
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=74.44 E-value=0.71 Score=41.83 Aligned_cols=37 Identities=16% Similarity=0.335 Sum_probs=29.2
Q ss_pred cccccccccccCCCCCeEEecCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 002384 525 IYCAKCGSKDLSADNDIILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGCDCKV 582 (929)
Q Consensus 525 d~C~VCg~~ds~ddndLLLCDG~CdRaFHq~CLdPPL~kesIPeGDe~WfCp~C~~K~ 582 (929)
.+|.+|++.+ |+ .|...||++|+++|. |.|..|+..+
T Consensus 8 ~~C~~C~~~~---------C~-~C~~c~~~~~~~~~~-----------~~~~~c~~~~ 44 (117)
T 4bbq_A 8 RKCKACVQGE---------CG-VCHYCRDMKKFGGPG-----------RMKQSCVLRQ 44 (117)
T ss_dssp SCSHHHHSCC---------CS-CSHHHHHSGGGTSCC-----------CSCCCCGGGC
T ss_pred CcCcCcCCcC---------CC-CCCCCcCCcccCCCC-----------ccccchhhee
Confidence 4677887652 99 699999999998753 9999996654
No 62
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=73.83 E-value=0.45 Score=47.12 Aligned_cols=54 Identities=22% Similarity=0.591 Sum_probs=38.3
Q ss_pred ccccccccccccCCCCCeEEecC-CCCCccccccCCCCCCCCCCC--CCCCCCCCCCCCCCC
Q 002384 524 DIYCAKCGSKDLSADNDIILCDG-ACDRGFHQYCLEPPLLKEDIP--PDDEGWLCPGCDCKV 582 (929)
Q Consensus 524 Dd~C~VCg~~ds~ddndLLLCDG-~CdRaFHq~CLdPPL~kesIP--eGDe~WfCp~C~~K~ 582 (929)
+.+|.+|+.+ +.+|+||- .|.++|=..|+.--+....+- .....|.|--|..++
T Consensus 79 ~~yC~wC~~G-----g~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P~~ 135 (159)
T 3a1b_A 79 QSYCTICCGG-----REVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGHKG 135 (159)
T ss_dssp BSSCTTTSCC-----SEEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCSSC
T ss_pred cceeeEecCC-----CeEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecCCcc
Confidence 4689999987 68999992 299999999987544211110 112369999998775
No 63
>3rsn_A SET1/ASH2 histone methyltransferase complex subun; PHD domain, winged helix domain, binding, transcription; 2.10A {Homo sapiens} PDB: 3s32_A
Probab=72.89 E-value=2.8 Score=42.15 Aligned_cols=53 Identities=11% Similarity=0.098 Sum_probs=32.5
Q ss_pred cccccccccccCCCCCeEEecCCCCCccccccCCCCCCCCCCCCCC--CCCCCCCCCCCC
Q 002384 525 IYCAKCGSKDLSADNDIILCDGACDRGFHQYCLEPPLLKEDIPPDD--EGWLCPGCDCKV 582 (929)
Q Consensus 525 d~C~VCg~~ds~ddndLLLCDG~CdRaFHq~CLdPPL~kesIPeGD--e~WfCp~C~~K~ 582 (929)
.+| -|+..+.+ .-.+|.|+ .|.++||..|+..+..+ -+| ++ -...|..|....
T Consensus 6 ~yC-YCG~~~~~-~~~mLqC~-~C~qWFH~~Cl~~~~~~-~lp-~~~fY~F~C~~C~~~g 60 (177)
T 3rsn_A 6 GSV-DEENGRQL-GEVELQCG-ICTKWFTADTFGIDTSS-CLP-FMTNYSFHCNVCHHSG 60 (177)
T ss_dssp ------CTTCCT-TSCEEECT-TTCCEEEGGGGTCCCTT-CCT-TCCSEEEECTTTSTTS
T ss_pred eEE-EcCCCCCC-CceeEeec-cccceecHHHhcccccC-ccc-cceeEEEEccccCCCC
Confidence 355 67775422 35799999 59999999999966532 233 33 124499997643
No 64
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=69.65 E-value=2.5 Score=46.82 Aligned_cols=41 Identities=29% Similarity=0.621 Sum_probs=27.6
Q ss_pred ccccccccccccccccCCCCCe--EEecC-CCCCccccccCCCCC
Q 002384 520 IDSEDIYCAKCGSKDLSADNDI--ILCDG-ACDRGFHQYCLEPPL 561 (929)
Q Consensus 520 id~EDd~C~VCg~~ds~ddndL--LLCDG-~CdRaFHq~CLdPPL 561 (929)
......-|.+|-..-. +.+.+ ..|+. .|...||..|+...|
T Consensus 304 ~ee~~~ECaICys~~l-~~g~lPdk~C~n~~C~h~FH~~CL~kWL 347 (381)
T 3k1l_B 304 EDNEELRCNICFAYRL-DGGEVPLVSCDNAKCVLKCHAVCLEEWF 347 (381)
T ss_dssp CCCSCCSCSSSCCSSC-TTCCCCCBCCSCTTCCCCBCSGGGHHHH
T ss_pred cccCCccCcccceeec-CCCCCccccccCCccCCccchHHHHHHH
Confidence 3445567999997642 21222 45873 599999999998743
No 65
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=67.69 E-value=1.6 Score=35.19 Aligned_cols=51 Identities=24% Similarity=0.474 Sum_probs=33.8
Q ss_pred cccccccccccccccCCCCCeEEecCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 002384 521 DSEDIYCAKCGSKDLSADNDIILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGCDCKV 582 (929)
Q Consensus 521 d~EDd~C~VCg~~ds~ddndLLLCDG~CdRaFHq~CLdPPL~kesIPeGDe~WfCp~C~~K~ 582 (929)
......|.+|...- ..+..+..- .|...||..|+...+.. ...||.|+...
T Consensus 11 ~~~~~~C~IC~~~~--~~~~~~~~~-~C~H~fc~~Ci~~~~~~--------~~~CP~Cr~~~ 61 (69)
T 2kiz_A 11 EDTEEKCTICLSIL--EEGEDVRRL-PCMHLFHQVCVDQWLIT--------NKKCPICRVDI 61 (69)
T ss_dssp TTCCCSBTTTTBCC--CSSSCEEEC-TTSCEEEHHHHHHHHHH--------CSBCTTTCSBS
T ss_pred CCCCCCCeeCCccc--cCCCcEEEe-CCCCHHHHHHHHHHHHc--------CCCCcCcCccc
Confidence 34456799998753 222334444 49999999999876531 14799997654
No 66
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=66.54 E-value=1.4 Score=36.42 Aligned_cols=50 Identities=24% Similarity=0.540 Sum_probs=34.3
Q ss_pred ccccccccccccccCCCCCeEEecCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 002384 522 SEDIYCAKCGSKDLSADNDIILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGCDCKV 582 (929)
Q Consensus 522 ~EDd~C~VCg~~ds~ddndLLLCDG~CdRaFHq~CLdPPL~kesIPeGDe~WfCp~C~~K~ 582 (929)
.+...|.+|...- .....+..- .|...||..|+..-+.. ...||.|+...
T Consensus 21 ~~~~~C~IC~~~~--~~~~~~~~l-~C~H~fh~~Ci~~w~~~--------~~~CP~Cr~~~ 70 (75)
T 1x4j_A 21 SEQTLCVVCMCDF--ESRQLLRVL-PCNHEFHAKCVDKWLKA--------NRTCPICRADS 70 (75)
T ss_dssp SSCCEETTTTEEC--CBTCEEEEE-TTTEEEETTHHHHHHHH--------CSSCTTTCCCC
T ss_pred CCCCCCeECCccc--CCCCeEEEE-CCCCHhHHHHHHHHHHc--------CCcCcCcCCcC
Confidence 3456899999763 223444455 49999999999886531 15899997653
No 67
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=66.48 E-value=3.2 Score=31.90 Aligned_cols=48 Identities=25% Similarity=0.490 Sum_probs=33.0
Q ss_pred ccccccccccccCCCCCeEEecCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 002384 524 DIYCAKCGSKDLSADNDIILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGCDCK 581 (929)
Q Consensus 524 Dd~C~VCg~~ds~ddndLLLCDG~CdRaFHq~CLdPPL~kesIPeGDe~WfCp~C~~K 581 (929)
...|.+|...-. .+...+..- .|...||..|+..-+.. ...||.|+..
T Consensus 5 ~~~C~IC~~~~~-~~~~~~~~~-~C~H~f~~~Ci~~w~~~--------~~~CP~Cr~~ 52 (55)
T 1iym_A 5 GVECAVCLAELE-DGEEARFLP-RCGHGFHAECVDMWLGS--------HSTCPLCRLT 52 (55)
T ss_dssp SCCCTTTCCCCC-TTSCCEECS-SSCCEECTTHHHHTTTT--------CCSCSSSCCC
T ss_pred CCcCccCCcccc-CCCceEECC-CCCCcccHHHHHHHHHc--------CCcCcCCCCE
Confidence 357999997642 223344444 39999999999986641 2689999765
No 68
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=65.32 E-value=0.96 Score=50.05 Aligned_cols=53 Identities=21% Similarity=0.555 Sum_probs=38.7
Q ss_pred ccccccccccccCCCCCeEEec--CCCCCccccccCCCCCCCCCCC--CCCCCCCCCCCCCCC
Q 002384 524 DIYCAKCGSKDLSADNDIILCD--GACDRGFHQYCLEPPLLKEDIP--PDDEGWLCPGCDCKV 582 (929)
Q Consensus 524 Dd~C~VCg~~ds~ddndLLLCD--G~CdRaFHq~CLdPPL~kesIP--eGDe~WfCp~C~~K~ 582 (929)
+.+|.+|+.+ +.+|+|| . |.++|=..|+.--+....+- .....|.|--|..+.
T Consensus 93 ~~yCr~C~~G-----g~l~~Cdn~~-C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~p 149 (386)
T 2pv0_B 93 QSYCSICCSG-----ETLLICGNPD-CTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPSS 149 (386)
T ss_dssp BCSCTTTCCC-----SSCEECCSTT-CCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSCC
T ss_pred cccceEcCCC-----CeEEEeCCCC-CCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCcc
Confidence 5689999987 6899999 7 99999999987654211111 112359999998876
No 69
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=64.82 E-value=1.6 Score=37.70 Aligned_cols=49 Identities=29% Similarity=0.612 Sum_probs=33.3
Q ss_pred cccccccccccccCCCCCeEEecCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 002384 523 EDIYCAKCGSKDLSADNDIILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGCDCKV 582 (929)
Q Consensus 523 EDd~C~VCg~~ds~ddndLLLCDG~CdRaFHq~CLdPPL~kesIPeGDe~WfCp~C~~K~ 582 (929)
++..|.+|...- ..+..+..- .|...||..|+...+.. .-.||.|+...
T Consensus 39 ~~~~C~IC~~~~--~~~~~~~~l-~C~H~Fh~~Ci~~wl~~--------~~~CP~Cr~~~ 87 (91)
T 2l0b_A 39 QEMCCPICCSEY--VKGDVATEL-PCHHYFHKPCVSIWLQK--------SGTCPVCRCMF 87 (91)
T ss_dssp SCSEETTTTEEC--CTTCEEEEE-TTTEEEEHHHHHHHHTT--------TCBCTTTCCBS
T ss_pred CCCCCcccChhh--cCCCcEEec-CCCChHHHHHHHHHHHc--------CCcCcCcCccC
Confidence 456799998753 223334344 49999999999986642 14899997653
No 70
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=62.39 E-value=1.7 Score=40.53 Aligned_cols=27 Identities=26% Similarity=0.559 Sum_probs=0.0
Q ss_pred CCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 002384 547 ACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGCDCK 581 (929)
Q Consensus 547 ~CdRaFHq~CLdPPL~kesIPeGDe~WfCp~C~~K 581 (929)
.|...||..|+.+-|.. . -.||.|+..
T Consensus 83 ~C~H~FH~~CI~~Wl~~-----~---~~CP~Cr~~ 109 (117)
T 4a0k_B 83 VCNHAFHFHCISRWLKT-----R---QVCPLDNRE 109 (117)
T ss_dssp -----------------------------------
T ss_pred CcCceEcHHHHHHHHHc-----C---CcCCCCCCe
Confidence 49999999999987642 1 469999665
No 71
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=60.40 E-value=5.4 Score=32.85 Aligned_cols=50 Identities=24% Similarity=0.470 Sum_probs=33.2
Q ss_pred cccccccccccccCCCCCeEEecCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 002384 523 EDIYCAKCGSKDLSADNDIILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGCDCKVD 583 (929)
Q Consensus 523 EDd~C~VCg~~ds~ddndLLLCDG~CdRaFHq~CLdPPL~kesIPeGDe~WfCp~C~~K~d 583 (929)
....|.+|...- .....+.-- .|...||..|+...+.. ...||.|+....
T Consensus 14 ~~~~C~IC~~~~--~~~~~~~~~-~C~H~fc~~Ci~~~~~~--------~~~CP~Cr~~~~ 63 (78)
T 2ect_A 14 SGLECPVCKEDY--ALGESVRQL-PCNHLFHDSCIVPWLEQ--------HDSCPVCRKSLT 63 (78)
T ss_dssp SSCCCTTTTSCC--CTTSCEEEC-TTSCEEETTTTHHHHTT--------TCSCTTTCCCCC
T ss_pred CCCCCeeCCccc--cCCCCEEEe-CCCCeecHHHHHHHHHc--------CCcCcCcCCccC
Confidence 346799998763 222233333 39999999999876531 158999977643
No 72
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=57.75 E-value=3.1 Score=31.89 Aligned_cols=48 Identities=23% Similarity=0.452 Sum_probs=32.8
Q ss_pred ccccccccccccCCCCCeEEecCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 002384 524 DIYCAKCGSKDLSADNDIILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGCDCK 581 (929)
Q Consensus 524 Dd~C~VCg~~ds~ddndLLLCDG~CdRaFHq~CLdPPL~kesIPeGDe~WfCp~C~~K 581 (929)
+..|.+|...-. ..+..+..- .|...||..|+..-+.. ...||.|+..
T Consensus 5 ~~~C~IC~~~~~-~~~~~~~~~-~CgH~fc~~Ci~~~~~~--------~~~CP~Cr~~ 52 (55)
T 2ecm_A 5 SSGCPICLEDIH-TSRVVAHVL-PCGHLLHRTCYEEMLKE--------GYRCPLCSGP 52 (55)
T ss_dssp CCSCTTTCCCCC-TTTSCEEEC-TTSCEEETTHHHHHHHH--------TCCCTTSCCS
T ss_pred CCcCcccChhhc-CCCcCeEec-CCCCcccHHHHHHHHHc--------CCcCCCCCCc
Confidence 357999997631 223445556 49999999999875531 1579999764
No 73
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=56.40 E-value=1 Score=37.33 Aligned_cols=50 Identities=20% Similarity=0.432 Sum_probs=33.2
Q ss_pred cccccccccccccCCCCCeEEecCCCCC---ccccccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 002384 523 EDIYCAKCGSKDLSADNDIILCDGACDR---GFHQYCLEPPLLKEDIPPDDEGWLCPGCDCKV 582 (929)
Q Consensus 523 EDd~C~VCg~~ds~ddndLLLCDG~CdR---aFHq~CLdPPL~kesIPeGDe~WfCp~C~~K~ 582 (929)
+...|.+|.... ++..+.-|. |.. .||+.||..-+.. .+. +.|+.|....
T Consensus 5 ~~~~CrIC~~~~--~~~l~~PC~--C~gs~~~~H~~Cl~~W~~~----~~~--~~C~~C~~~~ 57 (60)
T 1vyx_A 5 DVPVCWICNEEL--GNERFRACG--CTGELENVHRSCLSTWLTI----SRN--TACQICGVVY 57 (60)
T ss_dssp SCCEETTTTEEC--SCCCCCSCC--CSSGGGSCCHHHHHHHHHH----HTC--SBCTTTCCBC
T ss_pred CCCEeEEeecCC--CCceecCcC--CCCchhhhHHHHHHHHHHh----CCC--CccCCCCCee
Confidence 346799998763 222344444 544 9999999988741 233 8999996553
No 74
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=55.63 E-value=2.6 Score=37.25 Aligned_cols=54 Identities=22% Similarity=0.346 Sum_probs=32.0
Q ss_pred cccccccccccCC-------------CCCeEEecCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 002384 525 IYCAKCGSKDLSA-------------DNDIILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGCDCKV 582 (929)
Q Consensus 525 d~C~VCg~~ds~d-------------dndLLLCDG~CdRaFHq~CLdPPL~kesIPeGDe~WfCp~C~~K~ 582 (929)
..|.+|...-... +...+..- .|...||..|+..-|.. ..... .-.||.|+...
T Consensus 26 ~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~-~C~H~Fh~~Ci~~wl~~-~~~~~--~~~CP~CR~~~ 92 (114)
T 1v87_A 26 EDCIICMEKLAVASGYSDMTDSKALGPMVVGRLT-KCSHAFHLLCLLAMYCN-GNKDG--SLQCPSCKTIY 92 (114)
T ss_dssp CEETTTTEETTSCCSTTTTCCCSSSCSSCCEEES-SSCCEECHHHHHHHHHH-TCCSS--CCBCTTTCCBS
T ss_pred CcCccCChhhcCcccccccccccccCcccceecC-CCCCcccHHHHHHHHHc-ccCCC--CCcCCCCCCcc
Confidence 4799998752110 11233344 59999999999976521 00011 25799996653
No 75
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=55.46 E-value=2.4 Score=38.61 Aligned_cols=27 Identities=26% Similarity=0.550 Sum_probs=21.3
Q ss_pred CCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 002384 547 ACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGCDCK 581 (929)
Q Consensus 547 ~CdRaFHq~CLdPPL~kesIPeGDe~WfCp~C~~K 581 (929)
.|...||..|+.+-|.. .-.||.|+..
T Consensus 72 ~C~H~FH~~Ci~~Wl~~--------~~~CP~Cr~~ 98 (106)
T 3dpl_R 72 VCNHAFHFHCISRWLKT--------RQVCPLDNRE 98 (106)
T ss_dssp TTSCEEEHHHHHHHHTT--------CSBCSSSCSB
T ss_pred ccCcEECHHHHHHHHHc--------CCcCcCCCCc
Confidence 49999999999987642 1479999765
No 76
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=54.42 E-value=10 Score=34.98 Aligned_cols=45 Identities=20% Similarity=0.572 Sum_probs=30.9
Q ss_pred cccccccccccCCCCCeEEecCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 002384 525 IYCAKCGSKDLSADNDIILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGCDCKVD 583 (929)
Q Consensus 525 d~C~VCg~~ds~ddndLLLCDG~CdRaFHq~CLdPPL~kesIPeGDe~WfCp~C~~K~d 583 (929)
..|.+|...- .+.+... |...||..|+...+.. .-.||.|+....
T Consensus 54 ~~C~iC~~~~----~~~~~~~--CgH~fc~~Ci~~~~~~--------~~~CP~Cr~~~~ 98 (138)
T 4ayc_A 54 LQCIICSEYF----IEAVTLN--CAHSFCSYCINEWMKR--------KIECPICRKDIK 98 (138)
T ss_dssp SBCTTTCSBC----SSEEEET--TSCEEEHHHHHHHTTT--------CSBCTTTCCBCC
T ss_pred CCCcccCccc----CCceECC--CCCCccHHHHHHHHHc--------CCcCCCCCCcCC
Confidence 4699999763 2334444 8899999998865531 147999977643
No 77
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=51.77 E-value=8 Score=32.81 Aligned_cols=51 Identities=22% Similarity=0.535 Sum_probs=32.3
Q ss_pred cccccccccccccC----------CCCCeEEecCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 002384 523 EDIYCAKCGSKDLS----------ADNDIILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGCDCKV 582 (929)
Q Consensus 523 EDd~C~VCg~~ds~----------ddndLLLCDG~CdRaFHq~CLdPPL~kesIPeGDe~WfCp~C~~K~ 582 (929)
++..|.+|...-.. .+..++.-- .|...||..|+..-|.. . -.||.|+...
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~-~C~H~FH~~Ci~~Wl~~-----~---~~CP~CR~~~ 74 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWG-ECNHSFHNCCMSLWVKQ-----N---NRCPLCQQDW 74 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEE-TTSCEEEHHHHHHHTTT-----C---CBCTTTCCBC
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeC-CCCCccChHHHHHHHHh-----C---CCCCCcCCCc
Confidence 44568888765311 112233333 39999999999987752 1 3799997653
No 78
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=50.47 E-value=3.6 Score=33.58 Aligned_cols=49 Identities=29% Similarity=0.593 Sum_probs=33.1
Q ss_pred cccccccccccccCCCCCeEEecCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 002384 523 EDIYCAKCGSKDLSADNDIILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGCDCKV 582 (929)
Q Consensus 523 EDd~C~VCg~~ds~ddndLLLCDG~CdRaFHq~CLdPPL~kesIPeGDe~WfCp~C~~K~ 582 (929)
.+..|.+|...- ..+..++... |...||..|+...+.. ...||.|+...
T Consensus 14 ~~~~C~IC~~~~-~~~~~~~~~~--C~H~f~~~Ci~~~~~~--------~~~CP~Cr~~~ 62 (74)
T 2ep4_A 14 LHELCAVCLEDF-KPRDELGICP--CKHAFHRKCLIKWLEV--------RKVCPLCNMPV 62 (74)
T ss_dssp CSCBCSSSCCBC-CSSSCEEEET--TTEEEEHHHHHHHHHH--------CSBCTTTCCBC
T ss_pred CCCCCcCCCccc-CCCCcEEEcC--CCCEecHHHHHHHHHc--------CCcCCCcCccc
Confidence 346799999863 2223344344 9999999999875531 14799997654
No 79
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=48.72 E-value=8 Score=31.54 Aligned_cols=49 Identities=18% Similarity=0.269 Sum_probs=33.7
Q ss_pred ccccccccccccccCCCCCeEEecCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCCCch
Q 002384 522 SEDIYCAKCGSKDLSADNDIILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGCDCKVDC 584 (929)
Q Consensus 522 ~EDd~C~VCg~~ds~ddndLLLCDG~CdRaFHq~CLdPPL~kesIPeGDe~WfCp~C~~K~d~ 584 (929)
.+...|.+|...- .+.+... |...||..|+...+.. ...||.|+.....
T Consensus 13 ~~~~~C~IC~~~~----~~~~~~~--CgH~fC~~Ci~~~~~~--------~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 13 LTVPECAICLQTC----VHPVSLP--CKHVFCYLCVKGASWL--------GKRCALCRQEIPE 61 (71)
T ss_dssp SSCCBCSSSSSBC----SSEEEET--TTEEEEHHHHHHCTTC--------SSBCSSSCCBCCH
T ss_pred CCCCCCccCCccc----CCCEEcc--CCCHHHHHHHHHHHHC--------CCcCcCcCchhCH
Confidence 3456799999763 2233333 9999999999876531 1689999777553
No 80
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=45.26 E-value=7.7 Score=34.41 Aligned_cols=77 Identities=14% Similarity=0.307 Sum_probs=46.7
Q ss_pred ccccccccccccccCCCCCeEEecCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCCCchhh--HHhhhcCcccccc
Q 002384 522 SEDIYCAKCGSKDLSADNDIILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGCDCKVDCID--LVNELQGTRLFIT 599 (929)
Q Consensus 522 ~EDd~C~VCg~~ds~ddndLLLCDG~CdRaFHq~CLdPPL~kesIPeGDe~WfCp~C~~K~d~ld--lLna~qgtefsl~ 599 (929)
.++..|.+|...-. +.+++ . |...|+..|+..-+. .+. ..||.|+....... .+......+..+.
T Consensus 13 ~~~~~C~iC~~~~~---~p~~~-~--CgH~fC~~Ci~~~~~-----~~~--~~CP~Cr~~~~~~~~~~~~~~~~~n~~l~ 79 (115)
T 3l11_A 13 LSECQCGICMEILV---EPVTL-P--CNHTLCKPCFQSTVE-----KAS--LCCPFCRRRVSSWTRYHTRRNSLVNVELW 79 (115)
T ss_dssp HHHHBCTTTCSBCS---SCEEC-T--TSCEECHHHHCCCCC-----TTT--SBCTTTCCBCHHHHHHHHHTTCCBCHHHH
T ss_pred CCCCCCccCCcccC---ceeEc-C--CCCHHhHHHHHHHHh-----HCc--CCCCCCCcccCccccccccccchhhHHHH
Confidence 34578999997631 22333 3 999999999988653 222 78999977654321 1222223334444
Q ss_pred Ccccccchhhhc
Q 002384 600 DNWEKVFPEAAA 611 (929)
Q Consensus 600 ~s~rdvFpEvAa 611 (929)
.-++++|++...
T Consensus 80 ~~i~~~~p~~~~ 91 (115)
T 3l11_A 80 TIIQKHYPRECK 91 (115)
T ss_dssp HHHHHHSHHHHH
T ss_pred HHHHHHCCHHHH
Confidence 556777776554
No 81
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}
Probab=37.60 E-value=16 Score=32.41 Aligned_cols=31 Identities=29% Similarity=0.672 Sum_probs=22.7
Q ss_pred cccccccccccCCCCCeEEec-CCCCCccccccCC
Q 002384 525 IYCAKCGSKDLSADNDIILCD-GACDRGFHQYCLE 558 (929)
Q Consensus 525 d~C~VCg~~ds~ddndLLLCD-G~CdRaFHq~CLd 558 (929)
..|.+|+... .+..|-|. +.|..+||..|-.
T Consensus 18 l~C~iC~~~~---~GAciqC~~~~C~~~fHv~CA~ 49 (87)
T 2lq6_A 18 LTCYLCKQKG---VGASIQCHKANCYTAFHVTCAQ 49 (87)
T ss_dssp CCBTTTTBCC---SSCEEECSCTTTCCEEEHHHHH
T ss_pred CCCcCCCCCC---CcEeEecCCCCCCCcCcHHHHH
Confidence 4699998641 25677776 2599999999953
No 82
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=37.58 E-value=9 Score=30.64 Aligned_cols=47 Identities=19% Similarity=0.397 Sum_probs=31.4
Q ss_pred cccccccccccccCCCCCeEEecCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 002384 523 EDIYCAKCGSKDLSADNDIILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGCDCKV 582 (929)
Q Consensus 523 EDd~C~VCg~~ds~ddndLLLCDG~CdRaFHq~CLdPPL~kesIPeGDe~WfCp~C~~K~ 582 (929)
....|.+|...- .+-+..- .|...||..|+..-+.. ...||.|+...
T Consensus 4 ~~~~C~IC~~~~----~~~~~~~-~C~H~fc~~Ci~~~~~~--------~~~CP~Cr~~~ 50 (68)
T 1chc_A 4 VAERCPICLEDP----SNYSMAL-PCLHAFCYVCITRWIRQ--------NPTCPLCKVPV 50 (68)
T ss_dssp CCCCCSSCCSCC----CSCEEET-TTTEEESTTHHHHHHHH--------SCSTTTTCCCC
T ss_pred CCCCCeeCCccc----cCCcEec-CCCCeeHHHHHHHHHhC--------cCcCcCCChhh
Confidence 345799999763 2222334 49999999999875421 15799997654
No 83
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.84 E-value=12 Score=32.44 Aligned_cols=46 Identities=22% Similarity=0.452 Sum_probs=33.0
Q ss_pred cccccccccccCCCCCeEEecCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 002384 525 IYCAKCGSKDLSADNDIILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGCDCK 581 (929)
Q Consensus 525 d~C~VCg~~ds~ddndLLLCDG~CdRaFHq~CLdPPL~kesIPeGDe~WfCp~C~~K 581 (929)
..|.+|...-. .-+.|- .|...||..|+.--|.. . .. =.||.|...
T Consensus 16 ~~C~IC~~~i~----~g~~C~-~C~h~fH~~Ci~kWl~~--~--~~--~~CP~Cr~~ 61 (74)
T 2ct0_A 16 KICNICHSLLI----QGQSCE-TCGIRMHLPCVAKYFQS--N--AE--PRCPHCNDY 61 (74)
T ss_dssp CBCSSSCCBCS----SSEECS-SSCCEECHHHHHHHSTT--C--SS--CCCTTTCSC
T ss_pred CcCcchhhHcc----cCCccC-CCCchhhHHHHHHHHHh--c--CC--CCCCCCcCc
Confidence 56999998742 235788 69999999999987753 1 11 379999543
No 84
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=34.14 E-value=7.7 Score=34.01 Aligned_cols=47 Identities=26% Similarity=0.517 Sum_probs=34.7
Q ss_pred cccccccccccCCCCCeEEecCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 002384 525 IYCAKCGSKDLSADNDIILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGCDCKVD 583 (929)
Q Consensus 525 d~C~VCg~~ds~ddndLLLCDG~CdRaFHq~CLdPPL~kesIPeGDe~WfCp~C~~K~d 583 (929)
..|.+|...- .+-+.|- .|...||..|+..-+.. .. ..||.|+....
T Consensus 23 ~~C~IC~~~~----~~p~~~~-~CgH~FC~~Ci~~~~~~-----~~--~~CP~Cr~~~~ 69 (100)
T 3lrq_A 23 FRCFICMEKL----RDARLCP-HCSKLCCFSCIRRWLTE-----QR--AQCPHCRAPLQ 69 (100)
T ss_dssp TBCTTTCSBC----SSEEECT-TTCCEEEHHHHHHHHHH-----TC--SBCTTTCCBCC
T ss_pred CCCccCCccc----cCccccC-CCCChhhHHHHHHHHHH-----Cc--CCCCCCCCcCC
Confidence 5699999863 3466667 59999999999876542 11 58999987754
No 85
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=33.68 E-value=6.2 Score=31.68 Aligned_cols=51 Identities=24% Similarity=0.541 Sum_probs=33.0
Q ss_pred cccccccccccccCC--CCCeEEecCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 002384 523 EDIYCAKCGSKDLSA--DNDIILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGCDCKV 582 (929)
Q Consensus 523 EDd~C~VCg~~ds~d--dndLLLCDG~CdRaFHq~CLdPPL~kesIPeGDe~WfCp~C~~K~ 582 (929)
++..|.+|...-... .+..+..- .|...||..|+..-+.. .-.||.|+...
T Consensus 9 ~~~~C~IC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~--------~~~CP~Cr~~~ 61 (71)
T 3ng2_A 9 GTVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKN--------ANTCPTCRKKI 61 (71)
T ss_dssp TCCBCTTTCCBHHHHHTTTCCEEEC-TTSCEEEHHHHHHHHHH--------CSBCTTTCCBC
T ss_pred CCCCCcccChhhhccccccCCeEeC-CCCChHhHHHHHHHHHc--------CCCCCCCCCcc
Confidence 446799999752111 12344455 49999999999875431 13799997654
No 86
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=32.57 E-value=35 Score=27.75 Aligned_cols=53 Identities=13% Similarity=0.296 Sum_probs=33.2
Q ss_pred ccccccccccccCCCCCeEEecCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 002384 524 DIYCAKCGSKDLSADNDIILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGCDCKVD 583 (929)
Q Consensus 524 Dd~C~VCg~~ds~ddndLLLCDG~CdRaFHq~CLdPPL~kesIPeGDe~WfCp~C~~K~d 583 (929)
...|.+|...-. +.++ . .|...||..|+.--+...... ......||.|+....
T Consensus 12 ~~~C~IC~~~~~---~p~~-l--~CgH~fC~~Ci~~~~~~~~~~-~~~~~~CP~Cr~~~~ 64 (79)
T 2egp_A 12 EVTCPICLELLT---EPLS-L--DCGHSLCRACITVSNKEAVTS-MGGKSSCPVCGISYS 64 (79)
T ss_dssp CCEETTTTEECS---SCCC-C--SSSCCCCHHHHSCCCCCCSSS-CCCCCCCSSSCCCCC
T ss_pred CCCCcCCCcccC---CeeE-C--CCCCHHHHHHHHHHHHhcccC-CCCCCcCCCCCCcCC
Confidence 467999998631 2222 2 388999999999866421111 111378999977654
No 87
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=32.31 E-value=24 Score=36.32 Aligned_cols=45 Identities=22% Similarity=0.477 Sum_probs=31.9
Q ss_pred cccccccccccCCCCCeEEecCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCC
Q 002384 525 IYCAKCGSKDLSADNDIILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGCDC 580 (929)
Q Consensus 525 d~C~VCg~~ds~ddndLLLCDG~CdRaFHq~CLdPPL~kesIPeGDe~WfCp~C~~ 580 (929)
..|.+|..--. .=+.|. .|+..||..|+.--+.. . +. --||.|..
T Consensus 181 ~~C~iC~~iv~----~g~~C~-~C~~~~H~~C~~~~~~~--~--~~--~~CP~C~~ 225 (238)
T 3nw0_A 181 KICNICHSLLI----QGQSCE-TCGIRMHLPCVAKYFQS--N--AE--PRCPHCND 225 (238)
T ss_dssp CBCTTTCSBCS----SCEECS-SSCCEECHHHHHHHTTT--C--SS--CBCTTTCC
T ss_pred CcCcchhhHHh----CCcccC-ccChHHHHHHHHHHHHh--C--CC--CCCCCCCC
Confidence 46999998742 237798 69999999999865431 1 11 47998844
No 88
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=31.07 E-value=7.5 Score=36.67 Aligned_cols=48 Identities=21% Similarity=0.504 Sum_probs=34.1
Q ss_pred cccccccccccccCCCCCeEEecCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 002384 523 EDIYCAKCGSKDLSADNDIILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGCDCKV 582 (929)
Q Consensus 523 EDd~C~VCg~~ds~ddndLLLCDG~CdRaFHq~CLdPPL~kesIPeGDe~WfCp~C~~K~ 582 (929)
+...|.+|...- .+-+.+- .|...||..|+...+. .+. ..||.|....
T Consensus 53 ~~~~C~IC~~~~----~~p~~~~-~CgH~fC~~Ci~~~~~-----~~~--~~CP~Cr~~~ 100 (165)
T 2ckl_B 53 SELMCPICLDML----KNTMTTK-ECLHRFCADCIITALR-----SGN--KECPTCRKKL 100 (165)
T ss_dssp HHHBCTTTSSBC----SSEEEET-TTCCEEEHHHHHHHHH-----TTC--CBCTTTCCBC
T ss_pred CCCCCcccChHh----hCcCEeC-CCCChhHHHHHHHHHH-----hCc--CCCCCCCCcC
Confidence 346799998763 2345554 3999999999987653 122 6899998765
No 89
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.56 E-value=9.8 Score=30.11 Aligned_cols=51 Identities=24% Similarity=0.541 Sum_probs=32.6
Q ss_pred cccccccccccccCC--CCCeEEecCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 002384 523 EDIYCAKCGSKDLSA--DNDIILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGCDCKV 582 (929)
Q Consensus 523 EDd~C~VCg~~ds~d--dndLLLCDG~CdRaFHq~CLdPPL~kesIPeGDe~WfCp~C~~K~ 582 (929)
+...|.+|...-... ...++..- .|...||..|+...+.. ...||.|+...
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~--------~~~CP~Cr~~~ 66 (69)
T 2ea6_A 14 GTVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKN--------ANTCPTCRKKI 66 (69)
T ss_dssp CCCCCTTTCCCHHHHTTTTCCEEEC-SSSCEEEHHHHHHHHHH--------CSSCTTTCCCC
T ss_pred CCCCCcccCccccccccccCCeEeC-CCCChhcHHHHHHHHHc--------CCCCCCCCCcc
Confidence 446799999753111 12333445 49999999999875431 14799997653
No 90
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.60 E-value=8.3 Score=31.53 Aligned_cols=48 Identities=23% Similarity=0.445 Sum_probs=32.0
Q ss_pred cccccccccccccCCCCCeEEecCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 002384 523 EDIYCAKCGSKDLSADNDIILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGCDCKVD 583 (929)
Q Consensus 523 EDd~C~VCg~~ds~ddndLLLCDG~CdRaFHq~CLdPPL~kesIPeGDe~WfCp~C~~K~d 583 (929)
+...|.+|...- .+-+... .|...||..|+...+.. .-.||.|+....
T Consensus 14 ~~~~C~IC~~~~----~~p~~~~-~CgH~fC~~Ci~~~~~~--------~~~CP~Cr~~~~ 61 (72)
T 2djb_A 14 PYILCSICKGYL----IDATTIT-ECLHTFCKSCIVRHFYY--------SNRCPKCNIVVH 61 (72)
T ss_dssp GGGSCTTTSSCC----SSCEECS-SSCCEECHHHHHHHHHH--------CSSCTTTCCCCC
T ss_pred CCCCCCCCChHH----HCcCEEC-CCCCHHHHHHHHHHHHc--------CCcCCCcCcccC
Confidence 346799998763 2233444 38899999998865421 157999976643
No 91
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.07 E-value=21 Score=28.75 Aligned_cols=49 Identities=22% Similarity=0.451 Sum_probs=32.5
Q ss_pred cccccccccccccCCCCCeEEecCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 002384 523 EDIYCAKCGSKDLSADNDIILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGCDCKV 582 (929)
Q Consensus 523 EDd~C~VCg~~ds~ddndLLLCDG~CdRaFHq~CLdPPL~kesIPeGDe~WfCp~C~~K~ 582 (929)
+...|.+|...- .+.+... |...||..|+..-+.. ..+ .-.||.|+...
T Consensus 19 ~~~~C~IC~~~~----~~~~~~~--CgH~fC~~Ci~~~~~~---~~~--~~~CP~Cr~~~ 67 (73)
T 2ysl_A 19 EEVICPICLDIL----QKPVTID--CGHNFCLKCITQIGET---SCG--FFKCPLCKTSV 67 (73)
T ss_dssp CCCBCTTTCSBC----SSEEECT--TCCEEEHHHHHHHCSS---SCS--CCCCSSSCCCC
T ss_pred cCCEeccCCccc----CCeEEcC--CCChhhHHHHHHHHHc---CCC--CCCCCCCCCcC
Confidence 346799999863 2233333 9999999999876531 112 26899997654
No 92
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=27.74 E-value=6 Score=30.90 Aligned_cols=51 Identities=24% Similarity=0.541 Sum_probs=32.1
Q ss_pred ccccccccccccCC--CCCeEEecCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 002384 524 DIYCAKCGSKDLSA--DNDIILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGCDCKVD 583 (929)
Q Consensus 524 Dd~C~VCg~~ds~d--dndLLLCDG~CdRaFHq~CLdPPL~kesIPeGDe~WfCp~C~~K~d 583 (929)
+..|.+|...-... ....+..- .|...||..|+..-+.. ...||.|+....
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~--------~~~CP~Cr~~~~ 55 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKN--------ANTCPTCRKKIN 55 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEE-TTSCEEEHHHHHHHHHH--------CSBCTTTCCBCT
T ss_pred CCCCCccChhhhCccccCCCEEeC-CCCCchhHHHHHHHHHc--------CCCCCCCCccCC
Confidence 35699998753110 12333344 49999999999875431 157999976643
No 93
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=25.29 E-value=29 Score=28.52 Aligned_cols=48 Identities=21% Similarity=0.672 Sum_probs=31.7
Q ss_pred cccccccccccccCCCCCeEEecCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 002384 523 EDIYCAKCGSKDLSADNDIILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGCDCK 581 (929)
Q Consensus 523 EDd~C~VCg~~ds~ddndLLLCDG~CdRaFHq~CLdPPL~kesIPeGDe~WfCp~C~~K 581 (929)
++..|.+|...-. +.++ -. .|...||..|+...+.. .+ ...||.|+..
T Consensus 14 ~~~~C~IC~~~~~---~p~~-~~-~CgH~fC~~Ci~~~~~~----~~--~~~CP~Cr~~ 61 (74)
T 2yur_A 14 DELLCLICKDIMT---DAVV-IP-CCGNSYCDECIRTALLE----SD--EHTCPTCHQN 61 (74)
T ss_dssp GGGSCSSSCCCCT---TCEE-CS-SSCCEECTTHHHHHHHH----SS--SSCCSSSCCS
T ss_pred CCCCCcCCChHHh---CCeE-cC-CCCCHHHHHHHHHHHHh----cC--CCcCCCCCCc
Confidence 4567999987631 2233 33 38899999999876531 11 1589999775
No 94
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=25.23 E-value=9.5 Score=34.34 Aligned_cols=46 Identities=20% Similarity=0.484 Sum_probs=30.9
Q ss_pred cccccccccccCCCCCeEEecCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 002384 525 IYCAKCGSKDLSADNDIILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGCDCKVD 583 (929)
Q Consensus 525 d~C~VCg~~ds~ddndLLLCDG~CdRaFHq~CLdPPL~kesIPeGDe~WfCp~C~~K~d 583 (929)
..|.+|...- .+-+... |...||..|+...+. .+ ...||.|+....
T Consensus 53 ~~C~IC~~~~----~~p~~~~--CgH~fC~~Ci~~~~~-----~~--~~~CP~Cr~~~~ 98 (124)
T 3fl2_A 53 FQCICCQELV----FRPITTV--CQHNVCKDCLDRSFR-----AQ--VFSCPACRYDLG 98 (124)
T ss_dssp TBCTTTSSBC----SSEEECT--TSCEEEHHHHHHHHH-----TT--CCBCTTTCCBCC
T ss_pred CCCCcCChHH----cCcEEee--CCCcccHHHHHHHHh-----HC--cCCCCCCCccCC
Confidence 5699999763 1223233 999999999987553 11 158999977653
No 95
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=24.80 E-value=13 Score=30.38 Aligned_cols=53 Identities=17% Similarity=0.393 Sum_probs=32.3
Q ss_pred cccccccccccccCCCCCeEEecCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 002384 523 EDIYCAKCGSKDLSADNDIILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGCDCKVD 583 (929)
Q Consensus 523 EDd~C~VCg~~ds~ddndLLLCDG~CdRaFHq~CLdPPL~kesIPeGDe~WfCp~C~~K~d 583 (929)
+...|.+|...- .+-+.. .|...||..|+..-+.......+ ...||.|+....
T Consensus 18 ~~~~C~IC~~~~----~~p~~~--~CgH~fC~~Ci~~~~~~~~~~~~--~~~CP~Cr~~~~ 70 (85)
T 2ecw_A 18 EEVTCPICLELL----KEPVSA--DCNHSFCRACITLNYESNRNTDG--KGNCPVCRVPYP 70 (85)
T ss_dssp TTTSCTTTCSCC----SSCEEC--TTSCCBCHHHHHHHHHHSBCTTS--CBCCTTTCCCCC
T ss_pred cCCCCcCCChhh----CcceeC--CCCCHHHHHHHHHHHHhccCCCC--CCCCCCCCCcCC
Confidence 346799999763 122233 38889999998764431000111 379999976643
No 96
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.83 E-value=21 Score=29.71 Aligned_cols=46 Identities=17% Similarity=0.298 Sum_probs=31.5
Q ss_pred cccccccccccccCCCCCeEEecCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 002384 523 EDIYCAKCGSKDLSADNDIILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGCDCKV 582 (929)
Q Consensus 523 EDd~C~VCg~~ds~ddndLLLCDG~CdRaFHq~CLdPPL~kesIPeGDe~WfCp~C~~K~ 582 (929)
+...|.+|...- .+-+. - .|...||..|+...+.. ...||.|+...
T Consensus 14 ~~~~C~IC~~~~----~~p~~-~-~CgH~fC~~Ci~~~~~~--------~~~CP~Cr~~~ 59 (81)
T 2csy_A 14 IPFRCFICRQAF----QNPVV-T-KCRHYFCESCALEHFRA--------TPRCYICDQPT 59 (81)
T ss_dssp CCSBCSSSCSBC----CSEEE-C-TTSCEEEHHHHHHHHHH--------CSBCSSSCCBC
T ss_pred CCCCCcCCCchh----cCeeE-c-cCCCHhHHHHHHHHHHC--------CCcCCCcCccc
Confidence 346799998763 22333 3 49999999999875431 15799997764
No 97
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=21.97 E-value=25 Score=30.16 Aligned_cols=52 Identities=19% Similarity=0.483 Sum_probs=32.4
Q ss_pred cccccccccccccCCCCCeEEecCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 002384 523 EDIYCAKCGSKDLSADNDIILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGCDCKVD 583 (929)
Q Consensus 523 EDd~C~VCg~~ds~ddndLLLCDG~CdRaFHq~CLdPPL~kesIPeGDe~WfCp~C~~K~d 583 (929)
++..|.+|...-...+-.++-|. |...|+..|+.--+. .+. ..||.|+....
T Consensus 10 ~~~~CpICle~~~~~d~~~~p~~--CGH~fC~~Cl~~~~~-----~~~--~~CP~CR~~~~ 61 (78)
T 1e4u_A 10 DPVECPLCMEPLEIDDINFFPCT--CGYQICRFCWHRIRT-----DEN--GLCPACRKPYP 61 (78)
T ss_dssp CCCBCTTTCCBCCTTTTTCCSST--TSCCCCHHHHHHHTT-----SSC--SBCTTTCCBCS
T ss_pred cCCcCCccCccCccccccccccC--CCCCcCHHHHHHHHh-----cCC--CCCCCCCCccC
Confidence 34579999985322222333354 878888888865331 122 79999987654
No 98
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=21.58 E-value=13 Score=35.38 Aligned_cols=46 Identities=17% Similarity=0.483 Sum_probs=30.5
Q ss_pred cccccccccccCCCCCeEEecCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 002384 525 IYCAKCGSKDLSADNDIILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGCDCKVD 583 (929)
Q Consensus 525 d~C~VCg~~ds~ddndLLLCDG~CdRaFHq~CLdPPL~kesIPeGDe~WfCp~C~~K~d 583 (929)
..|.+|...- .+-+.. .|...|+..|+...+.. +. ..||.|+....
T Consensus 79 ~~C~IC~~~~----~~pv~~--~CgH~fC~~Ci~~~~~~-----~~--~~CP~Cr~~~~ 124 (150)
T 1z6u_A 79 FMCVCCQELV----YQPVTT--ECFHNVCKDCLQRSFKA-----QV--FSCPACRHDLG 124 (150)
T ss_dssp TBCTTTSSBC----SSEEEC--TTSCEEEHHHHHHHHHT-----TC--CBCTTTCCBCC
T ss_pred CEeecCChhh----cCCEEc--CCCCchhHHHHHHHHHh-----CC--CcCCCCCccCC
Confidence 4699998763 222332 39899999998875531 21 47999977644
No 99
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.47 E-value=17 Score=30.23 Aligned_cols=52 Identities=25% Similarity=0.406 Sum_probs=33.1
Q ss_pred cccccccccccccCCCCC-eEEecCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 002384 523 EDIYCAKCGSKDLSADND-IILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGCDCKV 582 (929)
Q Consensus 523 EDd~C~VCg~~ds~ddnd-LLLCDG~CdRaFHq~CLdPPL~kesIPeGDe~WfCp~C~~K~ 582 (929)
+...|.+|...-. +... .+.-. |...||..|+...+.. ..+ ...||.|+...
T Consensus 14 ~~~~C~IC~~~~~-~~~~~~~~~~--CgH~fC~~Ci~~~~~~---~~~--~~~CP~Cr~~~ 66 (88)
T 2ct2_A 14 EVLECPICMESFT-EEQLRPKLLH--CGHTICRQCLEKLLAS---SIN--GVRCPFCSKIT 66 (88)
T ss_dssp SCCBCTTTCCBCC-TTSSCEEECS--SSCEEEHHHHHHHHHH---CSS--CBCCTTTCCCB
T ss_pred CCCCCccCCcccc-ccCCCeEECC--CCChhhHHHHHHHHHc---CCC--CcCCCCCCCcc
Confidence 3467999998642 1111 33333 9999999999875532 111 27899997754
Done!