Query 002385
Match_columns 929
No_of_seqs 221 out of 398
Neff 3.6
Searched_HMMs 29240
Date Tue Mar 26 00:13:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002385.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002385hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2equ_A PHD finger protein 20-l 96.9 0.0012 4E-08 58.1 6.1 46 710-757 9-54 (74)
2 1mhn_A SurviVal motor neuron p 96.9 0.0015 5E-08 54.3 6.4 46 713-758 6-52 (59)
3 4a4f_A SurviVal of motor neuro 96.8 0.0021 7E-08 54.4 6.4 47 712-758 10-57 (64)
4 3p8d_A Medulloblastoma antigen 96.8 0.0021 7.2E-08 55.8 6.4 44 712-757 8-51 (67)
5 2g3r_A Tumor suppressor P53-bi 96.8 0.0012 4.2E-08 62.9 5.4 47 708-755 2-48 (123)
6 3s6w_A Tudor domain-containing 96.7 0.0025 8.6E-08 51.8 6.2 46 713-758 4-50 (54)
7 1g5v_A SurviVal motor neuron p 96.7 0.0027 9.2E-08 57.4 6.7 47 712-758 12-59 (88)
8 3qii_A PHD finger protein 20; 96.6 0.0037 1.3E-07 56.5 6.4 46 710-757 21-66 (85)
9 2l8d_A Lamin-B receptor; DNA b 96.5 0.005 1.7E-07 53.2 6.3 45 712-756 11-55 (66)
10 2dig_A Lamin-B receptor; tudor 96.4 0.0058 2E-07 53.0 6.4 44 712-755 14-57 (68)
11 2d9t_A Tudor domain-containing 96.2 0.0084 2.9E-07 52.6 6.5 54 712-767 11-65 (78)
12 2ldm_A Uncharacterized protein 95.1 0.00088 3E-08 60.0 0.0 43 713-757 9-51 (81)
13 3pnw_C Tudor domain-containing 96.1 0.01 3.5E-07 52.1 6.6 47 712-758 19-66 (77)
14 2eqj_A Metal-response element- 96.1 0.011 3.9E-07 51.2 6.4 44 713-757 16-59 (66)
15 1ssf_A Transformation related 96.0 0.0076 2.6E-07 59.5 5.9 50 707-757 5-54 (156)
16 4hcz_A PHD finger protein 1; p 94.9 0.052 1.8E-06 46.0 6.4 44 713-757 6-49 (58)
17 2m0o_A PHD finger protein 1; t 93.5 0.089 3E-06 46.9 5.2 45 712-757 28-72 (79)
18 2eqk_A Tudor domain-containing 93.1 0.15 5.2E-06 46.1 6.1 50 713-764 24-73 (85)
19 3fdr_A Tudor and KH domain-con 92.0 0.29 9.9E-06 43.4 6.5 46 712-758 29-75 (94)
20 2e5p_A Protein PHF1, PHD finge 91.0 0.47 1.6E-05 41.3 6.4 45 712-757 11-55 (68)
21 2qk2_A LP04448P; mini spindles 90.8 1.6 5.5E-05 43.0 11.2 150 58-228 55-207 (242)
22 2xk0_A Polycomb protein PCL; t 90.5 0.39 1.3E-05 42.0 5.5 43 712-757 17-59 (69)
23 2wac_A CG7008-PA; unknown func 90.5 0.39 1.3E-05 47.4 6.4 49 713-765 54-103 (218)
24 2bpt_A Importin beta-1 subunit 89.8 2.5 8.6E-05 48.1 13.1 163 69-237 506-683 (861)
25 2diq_A Tudor and KH domain-con 89.7 0.36 1.2E-05 44.1 5.0 46 712-758 34-80 (110)
26 2e5q_A PHD finger protein 19; 89.3 0.53 1.8E-05 40.5 5.3 45 712-757 9-53 (63)
27 1u6g_C TIP120 protein, CAND1; 87.8 3.6 0.00012 49.9 13.3 64 70-138 95-161 (1230)
28 1u6g_C TIP120 protein, CAND1; 86.8 13 0.00046 45.0 17.3 117 69-202 56-184 (1230)
29 3oc3_A Helicase MOT1, MOT1; re 86.4 0.81 2.8E-05 53.9 6.3 146 69-242 307-452 (800)
30 4fdd_A Transportin-1; heat rep 85.0 2.3 7.9E-05 49.5 9.3 160 71-238 493-674 (852)
31 3ntk_A Maternal protein tudor; 84.7 1.1 3.6E-05 43.8 5.4 42 711-753 48-90 (169)
32 2hqx_A P100 CO-activator tudor 83.9 1.3 4.3E-05 45.1 5.8 43 713-757 68-111 (246)
33 1qgr_A Protein (importin beta 83.7 5.3 0.00018 45.5 11.3 26 69-94 416-441 (876)
34 2qk1_A Protein STU2; STU2P, XM 82.6 9.1 0.00031 39.0 11.5 164 58-234 59-233 (249)
35 3dlm_A Histone-lysine N-methyl 82.5 1.6 5.3E-05 45.4 5.7 54 707-760 65-122 (213)
36 4b9w_A TDRD1, tudor domain-con 82.1 2.2 7.5E-05 42.5 6.5 50 713-765 68-118 (201)
37 1wa5_C Importin alpha RE-expor 81.8 8.6 0.00029 45.8 12.5 53 56-110 493-557 (960)
38 2bpt_A Importin beta-1 subunit 81.5 11 0.00037 42.9 12.7 154 69-234 377-541 (861)
39 4b9x_A TDRD1, tudor domain-con 79.5 2.3 7.9E-05 43.1 5.8 44 713-757 68-112 (226)
40 2rnz_A Histone acetyltransfera 79.4 8.7 0.0003 35.3 8.9 65 696-769 11-77 (94)
41 1ibr_B P95, importin beta-1 su 78.8 6.5 0.00022 41.0 9.1 109 60-185 91-203 (462)
42 2x1g_F Cadmus; transport prote 77.3 64 0.0022 38.1 17.9 170 74-258 706-909 (971)
43 3h8z_A FragIle X mental retard 75.5 3.9 0.00013 39.4 5.7 51 712-766 62-119 (128)
44 4fdd_A Transportin-1; heat rep 74.8 40 0.0014 39.2 15.1 64 69-137 408-471 (852)
45 1w63_A Adapter-related protein 74.5 12 0.0004 42.8 10.4 124 56-204 271-396 (618)
46 1qgr_A Protein (importin beta 74.5 18 0.00062 41.2 11.8 107 69-186 374-480 (876)
47 1b3u_A Protein (protein phosph 74.4 18 0.00062 38.9 11.3 118 69-203 172-291 (588)
48 4ffb_C Protein STU2; tubulin f 73.1 5.9 0.0002 40.1 6.8 82 31-119 156-246 (278)
49 4ffb_C Protein STU2; tubulin f 70.3 6 0.00021 40.1 6.1 141 69-222 63-208 (278)
50 2qk2_A LP04448P; mini spindles 69.6 22 0.00074 34.9 9.7 138 69-224 23-160 (242)
51 4b8j_A Importin subunit alpha- 68.2 46 0.0016 36.2 12.8 101 69-186 125-233 (528)
52 1b3u_A Protein (protein phosph 67.8 54 0.0018 35.3 13.1 26 69-94 410-435 (588)
53 1wgs_A MYST histone acetyltran 67.6 5 0.00017 38.6 4.5 50 712-769 14-67 (133)
54 3bdl_A Staphylococcal nuclease 66.7 6 0.00021 45.4 5.7 45 712-758 413-458 (570)
55 3m1i_C Exportin-1; heat repeat 66.0 14 0.00046 44.7 8.8 37 55-93 536-572 (1049)
56 1w63_A Adapter-related protein 65.2 48 0.0017 37.8 12.8 24 69-92 321-344 (618)
57 1ibr_B P95, importin beta-1 su 64.4 44 0.0015 34.7 11.3 125 70-204 268-419 (462)
58 2eko_A Histone acetyltransfera 63.7 9.5 0.00033 34.5 5.3 53 709-769 8-66 (87)
59 3tj1_A RNA polymerase I-specif 63.7 47 0.0016 39.4 12.5 145 24-204 108-261 (649)
60 1xqr_A HSPBP1 protein; armadil 63.6 69 0.0024 33.7 12.7 98 29-137 55-154 (296)
61 2lcc_A AT-rich interactive dom 61.9 5.6 0.00019 35.0 3.4 38 711-748 6-47 (76)
62 2x1g_F Cadmus; transport prote 60.8 52 0.0018 38.9 12.3 84 151-238 501-588 (971)
63 2f5k_A MORF-related gene 15 is 60.5 9.8 0.00034 35.4 4.9 39 708-748 20-60 (102)
64 2x19_B Importin-13; nuclear tr 60.4 66 0.0023 37.8 13.0 165 83-254 745-931 (963)
65 3ibv_A Exportin-T; karyopherin 59.7 55 0.0019 40.0 12.6 106 55-165 531-657 (980)
66 2ro0_A Histone acetyltransfera 59.4 18 0.0006 33.0 6.3 39 711-751 24-64 (92)
67 1wa5_C Importin alpha RE-expor 58.0 2E+02 0.0069 34.2 16.7 56 74-138 471-526 (960)
68 4b8j_A Importin subunit alpha- 58.0 1.6E+02 0.0054 32.0 14.6 30 59-90 244-273 (528)
69 2xdp_A Lysine-specific demethy 56.9 12 0.00043 35.8 5.1 41 709-751 63-103 (123)
70 2qqr_A JMJC domain-containing 56.8 16 0.00055 34.8 5.8 53 709-765 62-114 (118)
71 2qqr_A JMJC domain-containing 56.5 8.4 0.00029 36.7 3.8 41 710-752 5-45 (118)
72 2vgl_B AP-2 complex subunit be 54.6 15 0.0005 41.6 6.0 33 59-93 353-385 (591)
73 2vgl_B AP-2 complex subunit be 54.1 20 0.00068 40.5 7.0 116 69-202 247-362 (591)
74 1vsy_4 Proteasome activator BL 53.8 1.2E+02 0.0042 36.6 14.0 116 78-203 399-564 (799)
75 2x19_B Importin-13; nuclear tr 53.5 1.5E+02 0.0051 34.8 14.4 137 80-227 639-807 (963)
76 3u0r_A Apoptosis inhibitor 5; 53.1 1E+02 0.0035 35.7 12.5 178 6-203 170-354 (507)
77 2lcd_A AT-rich interactive dom 56.6 3.2 0.00011 39.6 0.0 49 706-756 52-100 (118)
78 4h7y_A Dual specificity protei 49.5 1E+02 0.0035 30.9 10.3 101 95-207 27-143 (161)
79 3ltm_A Alpha-REP4; protein eng 49.5 1.4E+02 0.0048 28.0 11.2 127 69-238 58-185 (211)
80 1wa5_B Importin alpha subunit; 49.3 85 0.0029 34.3 10.8 22 69-90 307-328 (530)
81 2bud_A Males-absent on the fir 45.8 44 0.0015 30.7 6.5 48 714-769 18-70 (92)
82 2vgl_A Adaptor protein complex 45.1 83 0.0028 36.2 10.4 115 69-204 299-415 (621)
83 1oyz_A Hypothetical protein YI 44.5 2.4E+02 0.0082 27.7 13.0 21 69-89 31-51 (280)
84 2xdp_A Lysine-specific demethy 43.2 6.7 0.00023 37.6 0.8 41 710-752 6-46 (123)
85 2qk1_A Protein STU2; STU2P, XM 42.3 1.4E+02 0.0047 30.2 10.4 143 69-225 24-174 (249)
86 3bu8_A Telomeric repeat-bindin 42.0 31 0.0011 36.3 5.6 47 54-100 35-81 (235)
87 3s6n_F Small nuclear ribonucle 41.7 63 0.0021 28.6 6.8 60 709-769 11-77 (86)
88 3tpo_A Importin subunit alpha- 38.9 4.3E+02 0.015 29.1 17.4 99 28-137 90-191 (529)
89 3tj1_A RNA polymerase I-specif 38.2 97 0.0033 36.9 9.6 108 81-202 354-468 (649)
90 1wa5_B Importin alpha subunit; 37.9 62 0.0021 35.3 7.5 124 69-204 223-352 (530)
91 3tpo_A Importin subunit alpha- 37.6 85 0.0029 34.7 8.7 56 33-90 224-280 (529)
92 2eqm_A PHD finger protein 20-l 37.1 83 0.0028 28.2 6.9 49 713-762 22-73 (88)
93 2jdq_A Importin alpha-1 subuni 37.1 1.2E+02 0.0042 31.4 9.3 118 69-203 72-202 (450)
94 3m1i_C Exportin-1; heat repeat 36.9 1.6E+02 0.0055 35.5 11.5 41 74-116 247-290 (1049)
95 3dlm_A Histone-lysine N-methyl 35.6 40 0.0014 35.1 5.2 45 708-753 6-52 (213)
96 2vgl_A Adaptor protein complex 35.1 1.7E+02 0.0058 33.7 10.9 133 69-224 82-218 (621)
97 1y96_A Gemin6, SIP2, GEM-assoc 34.9 33 0.0011 31.1 3.9 30 710-740 13-42 (86)
98 4db8_A Armadillo-repeat protei 34.7 3.1E+02 0.011 26.1 11.5 22 68-89 103-124 (252)
99 2jdq_A Importin alpha-1 subuni 32.9 99 0.0034 32.1 7.8 124 69-204 157-287 (450)
100 3sd4_A PHD finger protein 20; 32.2 86 0.0029 26.5 5.9 35 713-748 15-49 (69)
101 4hxt_A De novo protein OR329; 32.0 71 0.0024 30.2 6.0 150 68-233 51-210 (252)
102 3ul1_B Importin subunit alpha- 30.8 1E+02 0.0034 34.1 7.8 23 68-90 323-345 (510)
103 3a6p_A Exportin-5; exportin-5, 30.7 79 0.0027 39.4 7.6 86 151-238 529-629 (1204)
104 3ask_A E3 ubiquitin-protein li 30.3 68 0.0023 33.5 5.9 50 713-762 5-64 (226)
105 1n9r_A SMF, small nuclear ribo 30.0 46 0.0016 30.0 4.1 58 708-765 25-89 (93)
106 1ldd_A APC2WHB, anaphase promo 29.4 33 0.0011 30.3 2.9 30 84-113 27-60 (74)
107 4db8_A Armadillo-repeat protei 29.3 3.4E+02 0.012 25.8 10.4 23 69-91 20-42 (252)
108 1i4k_A Putative snRNP SM-like 28.3 54 0.0018 27.9 4.0 56 710-766 10-72 (77)
109 4db6_A Armadillo repeat protei 26.5 2E+02 0.0068 26.7 8.0 22 69-90 20-41 (210)
110 3ul1_B Importin subunit alpha- 26.3 6.8E+02 0.023 27.5 17.9 62 69-137 108-172 (510)
111 4hat_C Exportin-1; heat repeat 25.6 8.5E+02 0.029 30.0 15.3 106 150-261 792-912 (1023)
112 2of3_A ZYG-9; multifunctional 25.3 6.2E+02 0.021 26.7 12.5 74 156-230 168-244 (266)
113 2fhd_A RAD9 homolog, DNA repai 23.8 1.4E+02 0.0049 29.6 6.5 44 712-755 7-55 (153)
114 4gmo_A Putative uncharacterize 23.6 2.5E+02 0.0084 32.6 9.6 150 68-226 41-215 (684)
115 3s51_A Protein FACI, fanconi a 23.4 2.3E+02 0.0077 36.5 9.7 112 82-206 174-297 (1308)
116 1hx8_A Synapse-enriched clathr 23.2 3.2E+02 0.011 28.9 9.7 81 25-118 172-262 (299)
117 3zym_A Phosphatidylinositol-bi 22.6 1.8E+02 0.0062 31.2 7.7 80 26-118 166-255 (310)
118 4hat_C Exportin-1; heat repeat 21.8 4E+02 0.014 32.9 11.3 103 28-137 773-882 (1023)
119 4db6_A Armadillo repeat protei 21.7 2.8E+02 0.0097 25.7 8.1 105 68-186 61-168 (210)
120 4emk_B U6 snRNA-associated SM- 21.6 78 0.0027 27.0 3.8 40 710-750 10-52 (75)
121 1h64_1 SnRNP SM-like protein; 21.5 80 0.0027 26.8 3.8 55 710-765 10-71 (75)
122 1ljo_A Archaeal SM-like protei 21.4 87 0.003 26.7 4.0 56 710-765 11-73 (77)
123 1mgq_A SM-like protein; LSM, R 21.2 76 0.0026 27.6 3.7 40 708-748 19-61 (83)
124 4emh_A Probable U6 snRNA-assoc 21.0 3E+02 0.01 25.3 7.8 61 707-768 19-87 (105)
125 1i8f_A Putative snRNP SM-like 20.8 64 0.0022 27.9 3.1 36 710-746 17-55 (81)
126 3zyl_A Phosphatidylinositol-bi 20.8 1.5E+02 0.0052 31.2 6.5 80 26-118 166-255 (271)
127 2xdt_A Endoplasmic reticulum a 20.6 1.1E+03 0.039 28.4 14.8 96 149-255 698-796 (897)
128 3m9q_A Protein MALE-specific l 20.2 94 0.0032 28.9 4.2 37 711-747 20-66 (101)
129 1vsy_4 Proteasome activator BL 20.2 2.3E+02 0.0078 34.3 8.6 25 99-125 226-250 (799)
No 1
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.95 E-value=0.0012 Score=58.06 Aligned_cols=46 Identities=15% Similarity=0.325 Sum_probs=39.6
Q ss_pred ccccCCeEEEeeCCCCceEEEEEEEecCCCCeEEEEcCCCcceeeecC
Q 002385 710 EQLVGSRIKVWWPMDETFYKGVVDNYDPIKKKHRILYADGDEEILNLK 757 (929)
Q Consensus 710 e~lVG~RVkV~WP~D~~wY~G~V~syd~~tkkH~V~YDDGD~E~L~L~ 757 (929)
.=-||.+|.-.|. |+.||.|+|++.+.. +...|.|+|+..|.|...
T Consensus 9 ~~kvGd~clA~ws-Dg~~Y~A~I~~v~~~-~~~~V~f~Dyn~e~v~~~ 54 (74)
T 2equ_A 9 DFKAGEEVLARWT-DCRYYPAKIEAINKE-GTFTVQFYDGVIRCLKRM 54 (74)
T ss_dssp CCCTTCEEEEECS-SSSEEEEEEEEESTT-SSEEEEETTSCEEEECGG
T ss_pred CCCCCCEEEEECC-CCCEEEEEEEEECCC-CEEEEEEecCCeEEecHH
Confidence 3448999999999 999999999999975 789999999987877543
No 2
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*
Probab=96.94 E-value=0.0015 Score=54.28 Aligned_cols=46 Identities=24% Similarity=0.494 Sum_probs=41.6
Q ss_pred cCCeEEEeeCCCCceEEEEEEEecCCCCeEEEEcCC-CcceeeecCc
Q 002385 713 VGSRIKVWWPMDETFYKGVVDNYDPIKKKHRILYAD-GDEEILNLKK 758 (929)
Q Consensus 713 VG~RVkV~WP~D~~wY~G~V~syd~~tkkH~V~YDD-GD~E~L~L~~ 758 (929)
+|..|-..|..|+.||.|+|.+.++..+...|.|.| |..|.+.+..
T Consensus 6 ~G~~c~A~~s~Dg~wYrA~I~~i~~~~~~~~V~f~DYGn~e~v~~~~ 52 (59)
T 1mhn_A 6 VGDKCSAIWSEDGCIYPATIASIDFKRETCVVVYTGYGNREEQNLSD 52 (59)
T ss_dssp TTCEEEEECTTTSCEEEEEEEEEETTTTEEEEEETTTTEEEEEEGGG
T ss_pred cCCEEEEEECCCCCEEEEEEEEEcCCCCEEEEEEEcCCCEEEEcHHH
Confidence 789999999999999999999999877899999998 9999887753
No 3
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*
Probab=96.82 E-value=0.0021 Score=54.36 Aligned_cols=47 Identities=23% Similarity=0.438 Sum_probs=41.9
Q ss_pred ccCCeEEEeeCCCCceEEEEEEEecCCCCeEEEEcCC-CcceeeecCc
Q 002385 712 LVGSRIKVWWPMDETFYKGVVDNYDPIKKKHRILYAD-GDEEILNLKK 758 (929)
Q Consensus 712 lVG~RVkV~WP~D~~wY~G~V~syd~~tkkH~V~YDD-GD~E~L~L~~ 758 (929)
-+|..|...|..|+.||.++|.+.+...+...|.|.| |..|.+.+..
T Consensus 10 ~vGd~c~A~~s~Dg~wYrA~I~~v~~~~~~~~V~fvdYGn~e~V~~~~ 57 (64)
T 4a4f_A 10 KVGDKCMAVWSEDGQCYEAEIEEIDEENGTAAITFAGYGNAEVTPLLN 57 (64)
T ss_dssp CTTCEEEEECTTTSSEEEEEEEEEETTTTEEEEEETTTTEEEEEEGGG
T ss_pred CCCCEEEEEECCCCCEEEEEEEEEcCCCCEEEEEEEecCCEEEEeHHH
Confidence 4899999999999999999999999887899999987 8888887653
No 4
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=96.81 E-value=0.0021 Score=55.76 Aligned_cols=44 Identities=16% Similarity=0.286 Sum_probs=39.9
Q ss_pred ccCCeEEEeeCCCCceEEEEEEEecCCCCeEEEEcCCCcceeeecC
Q 002385 712 LVGSRIKVWWPMDETFYKGVVDNYDPIKKKHRILYADGDEEILNLK 757 (929)
Q Consensus 712 lVG~RVkV~WP~D~~wY~G~V~syd~~tkkH~V~YDDGD~E~L~L~ 757 (929)
.||-+|---| .|..||+|+|++.+.. +...|.|+||..|.|.+.
T Consensus 8 ~vGd~vmArW-~D~~yYpA~I~si~~~-~~Y~V~F~dG~~etvk~~ 51 (67)
T 3p8d_A 8 QINEQVLACW-SDCRFYPAKVTAVNKD-GTYTVKFYDGVVQTVKHI 51 (67)
T ss_dssp CTTCEEEEEC-TTSCEEEEEEEEECTT-SEEEEEETTSCEEEEEGG
T ss_pred ccCCEEEEEc-CCCCEeeEEEEEECCC-CeEEEEEeCCceEEEeHH
Confidence 4899999999 9999999999999997 679999999999988664
No 5
>2g3r_A Tumor suppressor P53-binding protein 1; tandem tudor domains, cell cycle-transcription complex; 1.25A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2ig0_A* 3lgf_A* 3lgl_A* 3lh0_A* 1xni_A
Probab=96.80 E-value=0.0012 Score=62.85 Aligned_cols=47 Identities=26% Similarity=0.386 Sum_probs=39.7
Q ss_pred ccccccCCeEEEeeCCCCceEEEEEEEecCCCCeEEEEcCCCcceeee
Q 002385 708 LNEQLVGSRIKVWWPMDETFYKGVVDNYDPIKKKHRILYADGDEEILN 755 (929)
Q Consensus 708 ~ge~lVG~RVkV~WP~D~~wY~G~V~syd~~tkkH~V~YDDGD~E~L~ 755 (929)
.+.+++|.||-.-|+++.-||.|+|+.+ ...++.+|.+|||++..|.
T Consensus 2 ~~~~~~G~rV~AkWsdn~~yYpG~V~~~-~~~~ky~V~FdDg~~~~v~ 48 (123)
T 2g3r_A 2 HMNSFVGLRVVAKWSSNGYFYSGKITRD-VGAGKYKLLFDDGYECDVL 48 (123)
T ss_dssp ---CCTTCEEEEECTTTCCEEEEEEEEE-EETTEEEEEETTSCEEEEE
T ss_pred CCccccceEEEEEeccCCcCcccEEEEe-ccCCeEEEEEcCCCeeEee
Confidence 3678999999999998879999999995 6678999999999998664
No 6
>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A*
Probab=96.75 E-value=0.0025 Score=51.84 Aligned_cols=46 Identities=20% Similarity=0.291 Sum_probs=39.1
Q ss_pred cCCeEEEeeCCCCceEEEEEEEecCCCCeEEEEcCC-CcceeeecCc
Q 002385 713 VGSRIKVWWPMDETFYKGVVDNYDPIKKKHRILYAD-GDEEILNLKK 758 (929)
Q Consensus 713 VG~RVkV~WP~D~~wY~G~V~syd~~tkkH~V~YDD-GD~E~L~L~~ 758 (929)
+|..|-..|..|+.||.|+|.+.+...+...|.|.| |..|.+.+..
T Consensus 4 ~G~~c~A~~s~Dg~wYrA~I~~i~~~~~~~~V~fvDYGn~e~v~~~~ 50 (54)
T 3s6w_A 4 PGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFIDYGNYEEVLLSN 50 (54)
T ss_dssp TTCEEEEEETTTTEEEEEEEEEC--CCSEEEEEETTTCCEEEEEGGG
T ss_pred CCCEEEEEECCCCCEEEEEEEEEeCCCCEEEEEEEccCCeEEEeHHH
Confidence 688999999999999999999999877888999987 9999887753
No 7
>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=96.71 E-value=0.0027 Score=57.38 Aligned_cols=47 Identities=23% Similarity=0.468 Sum_probs=42.0
Q ss_pred ccCCeEEEeeCCCCceEEEEEEEecCCCCeEEEEcCC-CcceeeecCc
Q 002385 712 LVGSRIKVWWPMDETFYKGVVDNYDPIKKKHRILYAD-GDEEILNLKK 758 (929)
Q Consensus 712 lVG~RVkV~WP~D~~wY~G~V~syd~~tkkH~V~YDD-GD~E~L~L~~ 758 (929)
-||..|...|..|+.||.++|.+.+...+...|.|.| |..|.|.+..
T Consensus 12 kvGd~C~A~ys~Dg~wYrA~I~~i~~~~~~~~V~fiDYGN~E~V~~~~ 59 (88)
T 1g5v_A 12 KVGDKCSAIWSEDGCIYPATIASIDFKRETCVVVYTGYGNREEQNLSD 59 (88)
T ss_dssp CSSCEEEEECTTTCCEEEEEEEEEETTTTEEEEEETTTCCEEEEEGGG
T ss_pred CCCCEEEEEECCCCCEEEEEEEEecCCCCEEEEEEecCCCEEEEcHHH
Confidence 4899999999999999999999999877899999986 8888887764
No 8
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=96.56 E-value=0.0037 Score=56.52 Aligned_cols=46 Identities=17% Similarity=0.281 Sum_probs=40.9
Q ss_pred ccccCCeEEEeeCCCCceEEEEEEEecCCCCeEEEEcCCCcceeeecC
Q 002385 710 EQLVGSRIKVWWPMDETFYKGVVDNYDPIKKKHRILYADGDEEILNLK 757 (929)
Q Consensus 710 e~lVG~RVkV~WP~D~~wY~G~V~syd~~tkkH~V~YDDGD~E~L~L~ 757 (929)
.=.||-+|---| .|..||.|+|++++.. +...|.|+||..+.|...
T Consensus 21 ~f~vGd~VlArW-~D~~yYPAkI~sV~~~-~~YtV~F~DG~~etvk~~ 66 (85)
T 3qii_A 21 EFQINEQVLACW-SDCRFYPAKVTAVNKD-GTYTVKFYDGVVQTVKHI 66 (85)
T ss_dssp CCCTTCEEEEEC-TTSCEEEEEEEEECTT-SEEEEEETTSCEEEEEGG
T ss_pred ccccCCEEEEEe-CCCCEeeEEEEEECCC-CeEEEEEeCCCeEEecHH
Confidence 445999999999 9999999999999997 689999999999887654
No 9
>2l8d_A Lamin-B receptor; DNA binding protein; NMR {Gallus gallus}
Probab=96.45 E-value=0.005 Score=53.18 Aligned_cols=45 Identities=27% Similarity=0.413 Sum_probs=40.3
Q ss_pred ccCCeEEEeeCCCCceEEEEEEEecCCCCeEEEEcCCCcceeeec
Q 002385 712 LVGSRIKVWWPMDETFYKGVVDNYDPIKKKHRILYADGDEEILNL 756 (929)
Q Consensus 712 lVG~RVkV~WP~D~~wY~G~V~syd~~tkkH~V~YDDGD~E~L~L 756 (929)
.||-.|.--||+|+.||+++|++++...--+.|.|-||-+|.|.-
T Consensus 11 ~vgd~VmaRW~Gd~~yYparI~Si~s~~~~Y~V~fKdgT~e~L~~ 55 (66)
T 2l8d_A 11 ADGEVVMGRWPGSVLYYEVQVTSYDDASHLYTVKYKDGTELALKE 55 (66)
T ss_dssp CSSCEEEEECTTSSCEEEEEEEEEETTTTEEEEEETTSCEEEEEG
T ss_pred ecCCEEEEEcCCCccceEEEEEEeccCCceEEEEecCCCEEeech
Confidence 378889999999999999999999988889999999988877643
No 10
>2dig_A Lamin-B receptor; tudor domain, integral nuclear envelope inner membrane protein, nuclear protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=96.41 E-value=0.0058 Score=53.00 Aligned_cols=44 Identities=23% Similarity=0.382 Sum_probs=40.2
Q ss_pred ccCCeEEEeeCCCCceEEEEEEEecCCCCeEEEEcCCCcceeee
Q 002385 712 LVGSRIKVWWPMDETFYKGVVDNYDPIKKKHRILYADGDEEILN 755 (929)
Q Consensus 712 lVG~RVkV~WP~D~~wY~G~V~syd~~tkkH~V~YDDGD~E~L~ 755 (929)
.||-.|.--||.|+.||+++|++++...--+.|.|-||-+|.|.
T Consensus 14 ~vgd~VmaRW~Gd~~yYparItSits~~~~Y~VkfKdgT~e~L~ 57 (68)
T 2dig_A 14 ADGEVVRGRWPGSSLYYEVEILSHDSTSQLYTVKYKDGTELELK 57 (68)
T ss_dssp CSSCEEEEECTTTCCEEEEEEEEEETTTTEEEEECTTSCEEEEE
T ss_pred ecCCEEEEEccCCccceEEEEEEeccCCceEEEEecCCCEEEec
Confidence 38899999999999999999999998888999999998887764
No 11
>2d9t_A Tudor domain-containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.34.9.1
Probab=96.20 E-value=0.0084 Score=52.58 Aligned_cols=54 Identities=17% Similarity=0.239 Sum_probs=45.5
Q ss_pred ccCCeEEEeeCCCCceEEEEEEEecCCCCeEEEEcCC-CcceeeecCcceEEEeeCC
Q 002385 712 LVGSRIKVWWPMDETFYKGVVDNYDPIKKKHRILYAD-GDEEILNLKKERWELIKGG 767 (929)
Q Consensus 712 lVG~RVkV~WP~D~~wY~G~V~syd~~tkkH~V~YDD-GD~E~L~L~~Ek~e~l~~~ 767 (929)
-+|..|-..|..|+.||.++|+..+.......|.|-| |..|.+.+. .++.+...
T Consensus 11 ~~G~~c~A~~s~Dg~wYRA~I~~i~~~~~~~~V~fiDYGN~e~V~~~--~Lr~l~~~ 65 (78)
T 2d9t_A 11 KPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFTDYGNYEEVLLS--NIKPVQTE 65 (78)
T ss_dssp CTTCEEEEECTTTCCEEEEEEEEECSSSSEEEEEETTTTEEEEEEGG--GEEECCCC
T ss_pred CcCCEEEEEECCCCCEEEEEEEEEeCCCCEEEEEEEcCCCeEEEcHH--HeEeCCHH
Confidence 4899999999999999999999999877889999987 999998776 35555443
No 12
>2ldm_A Uncharacterized protein; PHF20, tudor domain, epigenetics, methylated P53, transcript factor, transcription-protein binding complex; HET: M2L; NMR {Homo sapiens}
Probab=95.13 E-value=0.00088 Score=59.97 Aligned_cols=43 Identities=16% Similarity=0.325 Sum_probs=37.8
Q ss_pred cCCeEEEeeCCCCceEEEEEEEecCCCCeEEEEcCCCcceeeecC
Q 002385 713 VGSRIKVWWPMDETFYKGVVDNYDPIKKKHRILYADGDEEILNLK 757 (929)
Q Consensus 713 VG~RVkV~WP~D~~wY~G~V~syd~~tkkH~V~YDDGD~E~L~L~ 757 (929)
+|.+|--.|. |+.||.|+|++.+.. +...|.|+||..|.|.+.
T Consensus 9 vGd~clAkws-Dg~wY~A~I~~v~~~-~~y~V~F~DGn~E~V~~s 51 (81)
T 2ldm_A 9 INEQVLASWS-DSRFYPAKVTAVNKD-GTYTVKFYDGVVQTVKHI 51 (81)
Confidence 7899999999 999999999999864 578999999998888655
No 13
>3pnw_C Tudor domain-containing protein 3; FAB, structural genomics consortium, antibody, SGC, protein immune system complex; 2.05A {Homo sapiens}
Probab=96.10 E-value=0.01 Score=52.08 Aligned_cols=47 Identities=19% Similarity=0.270 Sum_probs=41.4
Q ss_pred ccCCeEEEeeCCCCceEEEEEEEecCCCCeEEEEcCC-CcceeeecCc
Q 002385 712 LVGSRIKVWWPMDETFYKGVVDNYDPIKKKHRILYAD-GDEEILNLKK 758 (929)
Q Consensus 712 lVG~RVkV~WP~D~~wY~G~V~syd~~tkkH~V~YDD-GD~E~L~L~~ 758 (929)
-+|..|-..|..|+.||.|+|.+.+...+...|.|.| |..|.+.+..
T Consensus 19 kvGd~C~A~ys~Dg~wYRA~I~~i~~~~~~~~V~fvDYGN~e~V~~~~ 66 (77)
T 3pnw_C 19 KPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFIDYGNYEEVLLSN 66 (77)
T ss_dssp CTTCEEEEEETTTTEEEEEEEEEECTTSSEEEEEETTTCCEEEEEGGG
T ss_pred CcCCEEEEEECCCCCEEEEEEEEEeCCCCEEEEEEEcCCCeEEEeHHH
Confidence 3899999999999999999999999877888999986 9998887653
No 14
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=96.06 E-value=0.011 Score=51.17 Aligned_cols=44 Identities=23% Similarity=0.483 Sum_probs=41.1
Q ss_pred cCCeEEEeeCCCCceEEEEEEEecCCCCeEEEEcCCCcceeeecC
Q 002385 713 VGSRIKVWWPMDETFYKGVVDNYDPIKKKHRILYADGDEEILNLK 757 (929)
Q Consensus 713 VG~RVkV~WP~D~~wY~G~V~syd~~tkkH~V~YDDGD~E~L~L~ 757 (929)
||..|..-| .|..||.|+|+..|...+...|.|.||.+-|+...
T Consensus 16 vGddVLA~w-tDGl~Y~gtI~~V~~~~gtC~V~F~D~s~~w~~~k 59 (66)
T 2eqj_A 16 EGQDVLARW-SDGLFYLGTIKKINILKQSCFIIFEDSSKSWVLWK 59 (66)
T ss_dssp TTCEEEEEC-TTSCEEEEEEEEEETTTTEEEEEETTTEEEEEETT
T ss_pred CCCEEEEEE-ccCcEEEeEEEEEccCCcEEEEEEccCCEEEEEee
Confidence 899999999 79999999999999999999999999999988654
No 15
>1ssf_A Transformation related protein 53 binding protein 1; tudor domains, tandem, SH3-like fold, beta barrel, alpha- helix, cell cycle; NMR {Mus musculus} SCOP: b.34.9.1 b.34.9.1
Probab=96.01 E-value=0.0076 Score=59.54 Aligned_cols=50 Identities=26% Similarity=0.379 Sum_probs=41.8
Q ss_pred cccccccCCeEEEeeCCCCceEEEEEEEecCCCCeEEEEcCCCcceeeecC
Q 002385 707 ALNEQLVGSRIKVWWPMDETFYKGVVDNYDPIKKKHRILYADGDEEILNLK 757 (929)
Q Consensus 707 ~~ge~lVG~RVkV~WP~D~~wY~G~V~syd~~tkkH~V~YDDGD~E~L~L~ 757 (929)
..|..+||.||---|.+++-||.|+|+.+ ....+.+|.+|||.+..|...
T Consensus 5 ~~~~~~iG~rVfArWsd~~yyYpG~V~~~-~~~~~Y~V~FdDG~~k~v~~~ 54 (156)
T 1ssf_A 5 SSGNSFVGLRVVAKWSSNGYFYSGKITRD-VGAGKYKLLFDDGYECDVLGK 54 (156)
T ss_dssp ---CCSTTCEEEECSSCSSEEEEEEEEEC-CTTTEEEEECTTSCEEEEETT
T ss_pred CCCcchhccEEEEEcCCCCcccccEEEEe-ccCCEEEEEEcCCCeeEeecc
Confidence 45788999999999999999999999997 556789999999999887643
No 16
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=94.93 E-value=0.052 Score=46.04 Aligned_cols=44 Identities=18% Similarity=0.421 Sum_probs=39.7
Q ss_pred cCCeEEEeeCCCCceEEEEEEEecCCCCeEEEEcCCCcceeeecC
Q 002385 713 VGSRIKVWWPMDETFYKGVVDNYDPIKKKHRILYADGDEEILNLK 757 (929)
Q Consensus 713 VG~RVkV~WP~D~~wY~G~V~syd~~tkkH~V~YDDGD~E~L~L~ 757 (929)
+|..|=+-|- |..||.|+|+..|....+..|+++||.+-|+.+.
T Consensus 6 ~GedVLarws-DG~fYlGtI~~V~~~~~~clV~F~D~s~~W~~~k 49 (58)
T 4hcz_A 6 EGQDVLARWT-DGLLYLGTIKKVDSAREVCLVQFEDDSQFLVLWK 49 (58)
T ss_dssp TTCEEEEECT-TSCEEEEEEEEEETTTTEEEEEETTSCEEEEEGG
T ss_pred cCCEEEEEec-CCCEEeEEEEEEecCCCEEEEEEcCCCeEEEEhH
Confidence 6888999998 5899999999999998899999999999888664
No 17
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=93.54 E-value=0.089 Score=46.87 Aligned_cols=45 Identities=18% Similarity=0.406 Sum_probs=40.5
Q ss_pred ccCCeEEEeeCCCCceEEEEEEEecCCCCeEEEEcCCCcceeeecC
Q 002385 712 LVGSRIKVWWPMDETFYKGVVDNYDPIKKKHRILYADGDEEILNLK 757 (929)
Q Consensus 712 lVG~RVkV~WP~D~~wY~G~V~syd~~tkkH~V~YDDGD~E~L~L~ 757 (929)
-+|..|=+-|- |..||.|+|+..+....+..|.|+||.+-|....
T Consensus 28 ~eGeDVLarws-DGlfYLGTI~kV~~~~e~ClV~F~D~S~~W~~~k 72 (79)
T 2m0o_A 28 WEGQDVLARWT-DGLLYLGTIKKVDSAREVCLVQFEDDSQFLVLWK 72 (79)
T ss_dssp CTTCEEEBCCT-TSCCCEEEEEEEETTTTEEEEEETTSCEEEEETT
T ss_pred ccCCEEEEEec-CCCEEeEEEEEeccCCCEEEEEEcCCCeEEEEee
Confidence 47888999998 7899999999999999999999999999988654
No 18
>2eqk_A Tudor domain-containing protein 4; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.06 E-value=0.15 Score=46.12 Aligned_cols=50 Identities=14% Similarity=0.092 Sum_probs=44.4
Q ss_pred cCCeEEEeeCCCCceEEEEEEEecCCCCeEEEEcCCCcceeeecCcceEEEe
Q 002385 713 VGSRIKVWWPMDETFYKGVVDNYDPIKKKHRILYADGDEEILNLKKERWELI 764 (929)
Q Consensus 713 VG~RVkV~WP~D~~wY~G~V~syd~~tkkH~V~YDDGD~E~L~L~~Ek~e~l 764 (929)
+|.-|.+..++|++||.|.|..-+..++-|.+.||=|.++.+...+ .+-|
T Consensus 24 ~g~~vaak~~d~n~WyRakV~~v~~~~~veVl~~DyGn~~~V~~~~--LR~L 73 (85)
T 2eqk_A 24 NDMHCAVKIQDKNQWRRGQIIRMVTDTLVEVLLYDVGVELVVNVDC--LRKL 73 (85)
T ss_dssp SSCEEEEECSSSCCEEEEEEEEECSSSEEEEECTTTCCEEEEETTT--EEEC
T ss_pred CCCEEEEEeCCCCeEEEEEEEEecCCCeEEEEEEccCCEEEEEccc--cccC
Confidence 7889999999999999999999999999999999999999998653 4444
No 19
>3fdr_A Tudor and KH domain-containing protein; TDRD2, structural genomics, structural genomics consortium, SGC, alternative splicing, RNA-binding; 1.75A {Homo sapiens} SCOP: b.34.9.1
Probab=92.03 E-value=0.29 Score=43.40 Aligned_cols=46 Identities=20% Similarity=0.244 Sum_probs=37.4
Q ss_pred ccCCeEEEeeCCCCceEEEEEEEecCCCCeEEEEc-CCCcceeeecCc
Q 002385 712 LVGSRIKVWWPMDETFYKGVVDNYDPIKKKHRILY-ADGDEEILNLKK 758 (929)
Q Consensus 712 lVG~RVkV~WP~D~~wY~G~V~syd~~tkkH~V~Y-DDGD~E~L~L~~ 758 (929)
-+|.-|-+.|+.|+.||.|.|.+... .+.-.|.| |=|..|.+.+..
T Consensus 29 ~~G~~c~a~~~~d~~wyRA~I~~~~~-~~~~~V~fvDyGn~e~v~~~~ 75 (94)
T 3fdr_A 29 HVGDIVAAPLPTNGSWYRARVLGTLE-NGNLDLYFVDFGDNGDCPLKD 75 (94)
T ss_dssp CTTCEEEEEETTTTEEEEEEEEEECT-TSCEEEEETTTCCEEEECGGG
T ss_pred CCCCEEEEEECCCCeEEEEEEEEECC-CCeEEEEEEcCCCeEEEEHHH
Confidence 48999999999999999999999975 34566666 568888876653
No 20
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=90.97 E-value=0.47 Score=41.33 Aligned_cols=45 Identities=18% Similarity=0.406 Sum_probs=40.2
Q ss_pred ccCCeEEEeeCCCCceEEEEEEEecCCCCeEEEEcCCCcceeeecC
Q 002385 712 LVGSRIKVWWPMDETFYKGVVDNYDPIKKKHRILYADGDEEILNLK 757 (929)
Q Consensus 712 lVG~RVkV~WP~D~~wY~G~V~syd~~tkkH~V~YDDGD~E~L~L~ 757 (929)
-+|..|=.-|- |..||.|+|+..+.......|.|.|+.+-|+...
T Consensus 11 ~eGqdVLarWs-DGlfYlGtV~kV~~~~~~ClV~FeD~s~~wv~~k 55 (68)
T 2e5p_A 11 WEGQDVLARWT-DGLLYLGTIKKVDSAREVCLVQFEDDSQFLVLWK 55 (68)
T ss_dssp CTTCEEEEECT-TSSEEEEEEEEEETTTTEEEEEETTTEEEEEETT
T ss_pred ccCCEEEEEec-CCcEEEeEEEEEecCCcEEEEEEccCCeeeeeee
Confidence 37889999998 6899999999999999999999999999887654
No 21
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=90.84 E-value=1.6 Score=42.98 Aligned_cols=150 Identities=9% Similarity=0.149 Sum_probs=88.0
Q ss_pred HHHHHhhhhhhhc-cCCCcCeehhhhHHHHHHhhhcCCCCCCChhHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHhh
Q 002385 58 LPTMKGLITNDLL-RRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVA 136 (929)
Q Consensus 58 ~pl~k~LVs~~LL-kHKDkdVRlyVAcCLADILRIyAPDAPYtDdqLKDIFqLfV~qf~~LaD~sSP~F~qy~yLLEtLA 136 (929)
..++..|.. +| +.+|..||..++.||..|.+-..++ | ..++..|+..++..|. |....--......|.++.
T Consensus 55 ~~i~~~L~~--~l~kd~~~~V~~~a~~~l~~la~~l~~~--~-~~~~~~ilp~ll~~l~---d~~~~vr~~a~~aL~~~~ 126 (242)
T 2qk2_A 55 GALVSALKK--VITKDSNVVLVAMAGKCLALLAKGLAKR--F-SNYASACVPSLLEKFK---EKKPNVVTALREAIDAIY 126 (242)
T ss_dssp HHHHHHHHH--HHHHCSCHHHHHHHHHHHHHHHHHHGGG--G-HHHHHHHHHHHHHGGG---CCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH--HhccCCCHHHHHHHHHHHHHHHHHHhhh--H-HHHHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHH
Confidence 344444432 45 4788889999999999999877552 2 3466666666666654 555444445566666665
Q ss_pred hhceeeeeccCCchHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcccC--CCcHHHHHHHHHHhhccCCCCChhhH
Q 002385 137 KVRSCLLMLDLECDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESE--DVSWDLLRILLASVRKENQDVSPTSW 214 (929)
Q Consensus 137 eVKS~VLMlDLe~ddLI~eLFktFF~iVr~~hp~kV~~~M~dIMs~VIEESE--~VP~eLLDvIL~~Ll~~~ks~~PaAy 214 (929)
.. +. +..++..++..+.... ..|......+|..++.... .+....+..|+..|..--.+..+.-+
T Consensus 127 ~~--------~~----~~~ll~~l~~~l~~~~-~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR 193 (242)
T 2qk2_A 127 AS--------TS----LEAQQESIVESLSNKN-PSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVR 193 (242)
T ss_dssp TT--------SC----HHHHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHTSSCHHHH
T ss_pred Hc--------CC----HHHHHHHHHHHHcCCC-hHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHhcCCChHHH
Confidence 42 11 2344555566556554 4788888888888887753 34444445544444433234455555
Q ss_pred HHHHHHHhhchHHH
Q 002385 215 KLGEKVFTKCAAKL 228 (929)
Q Consensus 215 ~LA~~VI~~CadKL 228 (929)
.-|...+......+
T Consensus 194 ~~A~~~l~~l~~~v 207 (242)
T 2qk2_A 194 DSSAEALGTLIKLM 207 (242)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc
Confidence 55544444433333
No 22
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=90.49 E-value=0.39 Score=42.05 Aligned_cols=43 Identities=16% Similarity=0.237 Sum_probs=36.3
Q ss_pred ccCCeEEEeeCCCCceEEEEEEEecCCCCeEEEEcCCCcceeeecC
Q 002385 712 LVGSRIKVWWPMDETFYKGVVDNYDPIKKKHRILYADGDEEILNLK 757 (929)
Q Consensus 712 lVG~RVkV~WP~D~~wY~G~V~syd~~tkkH~V~YDDGD~E~L~L~ 757 (929)
-+|..|=+-|- |..||.|+|+. ..+.+..|+|+|.-+.|+.+.
T Consensus 17 ~~geDVL~rw~-DG~fYLGtIVd--~~~~~ClV~FeD~S~~Wv~~k 59 (69)
T 2xk0_A 17 ALQEDVFIKCN-DGRFYLGTIID--QTSDQYLIRFDDQSEQWCEPD 59 (69)
T ss_dssp CTTCEEEEECT-TSCEEEEEEEE--ECSSCEEEEETTCCEEEECTT
T ss_pred ccCCeEEEEec-CCCEEEEEEEe--cCCceEEEEecCCcceeeeHH
Confidence 37999999998 58999999965 447889999999999888765
No 23
>2wac_A CG7008-PA; unknown function, tudor, beta-barrel, nuclease domain, tudor P100, SND1, methylated arginine, SDMA, splicing; 2.10A {Drosophila melanogaster}
Probab=90.48 E-value=0.39 Score=47.44 Aligned_cols=49 Identities=20% Similarity=0.476 Sum_probs=39.8
Q ss_pred cCCeEEEeeCCCCceEEEEEEEecCCCCeEEEEcCC-CcceeeecCcceEEEee
Q 002385 713 VGSRIKVWWPMDETFYKGVVDNYDPIKKKHRILYAD-GDEEILNLKKERWELIK 765 (929)
Q Consensus 713 VG~RVkV~WP~D~~wY~G~V~syd~~tkkH~V~YDD-GD~E~L~L~~Ek~e~l~ 765 (929)
+|..|-+.|..|+.||.|+|+.... ..-.|.|-| |..+.+.+.. ++.+.
T Consensus 54 ~g~~c~a~~~~d~~wyRa~V~~v~~--~~~~V~~vDyG~~~~v~~~~--l~~l~ 103 (218)
T 2wac_A 54 RGDLVAAQFTLDNQWYRAKVERVQG--SNATVLYIDYGNKETLPTNR--LAALP 103 (218)
T ss_dssp TTCEEEEECTTTCCEEEEEEEEEET--TEEEEEETTTCCEEEEEGGG--EEECC
T ss_pred cCCEEEEEECCCCeEEEEEEEEecC--CeEEEEEEecCCeEEEchHH--cccCC
Confidence 7899999999999999999999987 677888854 9999886543 44443
No 24
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=89.79 E-value=2.5 Score=48.08 Aligned_cols=163 Identities=11% Similarity=0.106 Sum_probs=82.7
Q ss_pred hccCCC--cCeehhhhHHHHHHhhhcCCCCCCChhHHHHHHHHHHHHhccc--------CCCC-CcchHHHHHHHHHhhh
Q 002385 69 LLRRSD--MDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENL--------SHAS-GRYYMKALSILDTVAK 137 (929)
Q Consensus 69 LLkHKD--kdVRlyVAcCLADILRIyAPDAPYtDdqLKDIFqLfV~qf~~L--------aD~s-SP~F~qy~yLLEtLAe 137 (929)
+|.+.| ..||..++.||..|.....++ ....+..++..++..|... .+.+ .....-+..+++.|..
T Consensus 506 ~l~~~d~~~~vr~~a~~al~~l~~~~~~~---~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~ 582 (861)
T 2bpt_A 506 AANRIDNEFNARASAFSALTTMVEYATDT---VAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAA 582 (861)
T ss_dssp HHTCSCCGGGHHHHHHHHHHHHHHHCCGG---GHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCcCcchHHHHHHHHHHHHHHHHcchh---hHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHH
Confidence 456555 689999999999999876443 1234555555555555432 1111 1222223344444443
Q ss_pred hceeeeeccCCchHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhccc----CCCcHHHHHHHHHHhhccCCCCChhh
Q 002385 138 VRSCLLMLDLECDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDES----EDVSWDLLRILLASVRKENQDVSPTS 213 (929)
Q Consensus 138 VKS~VLMlDLe~ddLI~eLFktFF~iVr~~hp~kV~~~M~dIMs~VIEES----E~VP~eLLDvIL~~Ll~~~ks~~PaA 213 (929)
+=.. +.-+....+..++..++..++...+..|.......+..++.-. ...-..++..|+..|...+......|
T Consensus 583 l~~~---~~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~vr~~a 659 (861)
T 2bpt_A 583 VIRK---SPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITA 659 (861)
T ss_dssp HHHH---CGGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHH
T ss_pred HHHH---hhhhhHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 3111 0112234556667777766665443134433333333333222 11223466666666643333333445
Q ss_pred HHHHHHHHhhchHHHHHHHHHHHH
Q 002385 214 WKLGEKVFTKCAAKLKTNLKEAVQ 237 (929)
Q Consensus 214 y~LA~~VI~~CadKL~p~I~q~fn 237 (929)
..+...++..+...+.||+..++.
T Consensus 660 ~~~l~~l~~~~~~~~~~~~~~l~~ 683 (861)
T 2bpt_A 660 VGFIADISNSLEEDFRRYSDAMMN 683 (861)
T ss_dssp HHHHHHHHHHTGGGGHHHHHHHHH
T ss_pred HHHHHHHHHHhchhccchHHHHHH
Confidence 555566777777777777655543
No 25
>2diq_A Tudor and KH domain-containing protein; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=89.69 E-value=0.36 Score=44.07 Aligned_cols=46 Identities=20% Similarity=0.218 Sum_probs=37.7
Q ss_pred ccCCeEEEeeCCCCceEEEEEEEecCCCCeEEEEc-CCCcceeeecCc
Q 002385 712 LVGSRIKVWWPMDETFYKGVVDNYDPIKKKHRILY-ADGDEEILNLKK 758 (929)
Q Consensus 712 lVG~RVkV~WP~D~~wY~G~V~syd~~tkkH~V~Y-DDGD~E~L~L~~ 758 (929)
.+|.-|-+.|..|+.||.|+|..+++. +.-.|.| |=|..|.+.+..
T Consensus 34 ~~G~~c~a~~~~d~~wyRA~V~~~~~~-~~~~V~fvDyGn~e~v~~~~ 80 (110)
T 2diq_A 34 HVGDIVAAPLPTNGSWYRARVLGTLEN-GNLDLYFVDFGDNGDCPLKD 80 (110)
T ss_dssp CTTCEEEECCTTTCSCEEEEECCCCSS-SCEEEEETTTCCEEEECGGG
T ss_pred CCCCEEEEEECCCCeEEEEEEEEECCC-CeEEEEEEeCCCeEEEehHH
Confidence 478999999999999999999999874 4566777 468988887653
No 26
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=89.34 E-value=0.53 Score=40.52 Aligned_cols=45 Identities=18% Similarity=0.353 Sum_probs=40.2
Q ss_pred ccCCeEEEeeCCCCceEEEEEEEecCCCCeEEEEcCCCcceeeecC
Q 002385 712 LVGSRIKVWWPMDETFYKGVVDNYDPIKKKHRILYADGDEEILNLK 757 (929)
Q Consensus 712 lVG~RVkV~WP~D~~wY~G~V~syd~~tkkH~V~YDDGD~E~L~L~ 757 (929)
-+|..|=.-|- |..||.|+|+..|....+..|.|.|+-+-|+...
T Consensus 9 ~eGqdVLarWs-DGlfYlgtV~kV~~~~~~ClV~FeD~s~~wv~~k 53 (63)
T 2e5q_A 9 TEGQYVLCRWT-DGLYYLGKIKRVSSSKQSCLVTFEDNSKYWVLWK 53 (63)
T ss_dssp CTTCEEEEECT-TSCEEEEEECCCCSTTSEEEEEETTSCEEEEEGG
T ss_pred ecCCEEEEEec-CCCEEEEEEEEEecCCCEEEEEEccCceeEEEee
Confidence 37889999998 7899999999999999999999999999887654
No 27
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=87.81 E-value=3.6 Score=49.95 Aligned_cols=64 Identities=16% Similarity=0.129 Sum_probs=43.7
Q ss_pred ccCCCcCeehhhhHHHHHHhhhcCCC---CCCChhHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHhhhh
Q 002385 70 LRRSDMDVRLSVTSCISEITRITAPD---SPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKV 138 (929)
Q Consensus 70 LkHKDkdVRlyVAcCLADILRIyAPD---APYtDdqLKDIFqLfV~qf~~LaD~sSP~F~qy~yLLEtLAeV 138 (929)
|.+.+..||..++-||..|.+.+.|+ ..+......+++.+++..|.. ++.+..+.+.|+.|.++
T Consensus 95 l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~-----~~~~~~~~~al~~l~~~ 161 (1230)
T 1u6g_C 95 MLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAK-----QEDVSVQLEALDIMADM 161 (1230)
T ss_dssp TTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSC-----CSCHHHHHHHHHHHHHH
T ss_pred hcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcC-----CCchHHHHHHHHHHHHH
Confidence 45677789999999999999999886 344455677888887777642 23345556666666554
No 28
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=86.76 E-value=13 Score=45.04 Aligned_cols=117 Identities=11% Similarity=0.111 Sum_probs=68.5
Q ss_pred hccCCCcCeehhhhHHHHHHhhhcCCCCCCChhHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHhhhhceeeeeccCC
Q 002385 69 LLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDLE 148 (929)
Q Consensus 69 LLkHKDkdVRlyVAcCLADILRIyAPDAPYtDdqLKDIFqLfV~qf~~LaD~sSP~F~qy~yLLEtLAeVKS~VLMlDLe 148 (929)
.|.+.+..||..++.||..|...+.+ .++..|+..++..| .|.+... +......|+.+-. ++.
T Consensus 56 ~L~d~~~~vR~~A~~~L~~l~~~~~~------~~~~~i~~~Ll~~l---~d~~~~v---R~~a~~~L~~i~~-----~l~ 118 (1230)
T 1u6g_C 56 LLEDKNGEVQNLAVKCLGPLVSKVKE------YQVETIVDTLCTNM---LSDKEQL---RDISSIGLKTVIG-----ELP 118 (1230)
T ss_dssp HTTCSSHHHHHHHHHHHHHHHTTSCH------HHHHHHHHHHHHHT---TCSSSHH---HHHHHHHHHHHHH-----HCC
T ss_pred HhcCCCHHHHHHHHHHHHHHHHhCCH------HHHHHHHHHHHHHh---cCCcHHH---HHHHHHHHHHHHH-----hCC
Confidence 45689999999999999999975422 56777777777664 4544322 3333444443321 121
Q ss_pred --------chHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcccCC-C-c--HHHHHHHHHHh
Q 002385 149 --------CDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESED-V-S--WDLLRILLASV 202 (929)
Q Consensus 149 --------~ddLI~eLFktFF~iVr~~hp~kV~~~M~dIMs~VIEESE~-V-P--~eLLDvIL~~L 202 (929)
......+++..++..+.+.....+......++..+++.... + | ..++..++..|
T Consensus 119 ~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~~~ll~~l~~~L 184 (1230)
T 1u6g_C 119 PASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQL 184 (1230)
T ss_dssp -----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGG
T ss_pred CcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHH
Confidence 12345566666666665323346667777777887764322 2 2 34455544444
No 29
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=86.38 E-value=0.81 Score=53.87 Aligned_cols=146 Identities=12% Similarity=0.079 Sum_probs=99.9
Q ss_pred hccCCCcCeehhhhHHHHHHhhhcCCCCCCChhHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHhhhhceeeeeccCC
Q 002385 69 LLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDLE 148 (929)
Q Consensus 69 LLkHKDkdVRlyVAcCLADILRIyAPDAPYtDdqLKDIFqLfV~qf~~LaD~sSP~F~qy~yLLEtLAeVKS~VLMlDLe 148 (929)
-|...|-|||+.+|.||..|. ..+++..|+..+-++|..|.| -+++=..-+-||..|-.... .+...
T Consensus 307 GL~D~DDDVRAVAAetLiPIA---------~p~~l~~LL~iLWd~L~~LDD-LSASTgSVMdLLAkL~s~p~--~a~~d- 373 (800)
T 3oc3_A 307 LLSSPDEDIKLLSAELLCHFP---------ITDSLDLVLEKCWKNIESEEL-ISVSKTSNLSLLTKIYRENP--ELSIP- 373 (800)
T ss_dssp HTTCSSHHHHHHHHHHHTTSC---------CSSTHHHHHHHHHHHHHTCCS-CCTTHHHHHHHHHHHHHHCT--TCCCC-
T ss_pred hcCCcccHHHHHHHHHhhhhc---------chhhHHHHHHHHHHHhhhhcc-cchhhHHHHHHHHHHHcCCc--ccccC-
Confidence 346678999999999999988 236799999999999999966 44554555666666655442 11111
Q ss_pred chHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcccCCCcHHHHHHHHHHhhccCCCCChhhHHHHHHHHhhchHHH
Q 002385 149 CDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESEDVSWDLLRILLASVRKENQDVSPTSWKLGEKVFTKCAAKL 228 (929)
Q Consensus 149 ~ddLI~eLFktFF~iVr~~hp~kV~~~M~dIMs~VIEESE~VP~eLLDvIL~~Ll~~~ks~~PaAy~LA~~VI~~CadKL 228 (929)
..|+..||--|... -.+|+.+....|..++ -..++..|+++++=+.. ..-..++..|...-..=+
T Consensus 374 -p~LVPRL~PFLRHt-----ITSVR~AVL~TL~tfL------~~~~LRLIFQNILLE~n---eeIl~lS~~VWk~r~~Ll 438 (800)
T 3oc3_A 374 -PERLKDIFPCFTSP-----VPEVRTSILNMVKNLS------EESIDFLVAEVVLIEEK---DEIREMAIKLLKKRRDLP 438 (800)
T ss_dssp -SGGGGGTGGGGTCS-----SHHHHHHHHHHTTTCC------CHHHHHHHHHHHHHCSC---HHHHHHHHHHHHTCSCCC
T ss_pred -hHHHHHHHhhhcCC-----cHHHHHHHHHHHHHHH------hhhHHHHHHHHHHhCCc---HHHHHHHHHHHHHHHHHH
Confidence 26666666544332 3568777777776666 67899999999875432 445567777765111119
Q ss_pred HHHHHHHHHhcCCC
Q 002385 229 KTNLKEAVQSRGIA 242 (929)
Q Consensus 229 ~p~I~q~fnS~Gi~ 242 (929)
++.|+.+++-.|++
T Consensus 439 ~~wi~L~MtPIGv~ 452 (800)
T 3oc3_A 439 KNLILHFMNVIGGS 452 (800)
T ss_dssp HHHHHHHHHHTTSC
T ss_pred HHHHHHhcCcCCCc
Confidence 99999999998888
No 30
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=85.02 E-value=2.3 Score=49.46 Aligned_cols=160 Identities=9% Similarity=0.180 Sum_probs=90.2
Q ss_pred cCCCcCeehhhhHHHHHHhhhcCCCCCCChhHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHhhhhceeeeeccCCch
Q 002385 71 RRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDLECD 150 (929)
Q Consensus 71 kHKDkdVRlyVAcCLADILRIyAPDAPYtDdqLKDIFqLfV~qf~~LaD~sSP~F~qy~yLLEtLAeVKS~VLMlDLe~d 150 (929)
+..+......+.-||.-|.....+. -...+.+..|+..++..+..|.|.+...+ .+++.|+.+-..+- ..+-
T Consensus 493 ~~~~~~~~~~~~~ai~~l~~~~~~~-~~~~~~~~~l~p~l~~~~~~l~d~~~~~~----~~~~~l~~i~~~~g---~~~~ 564 (852)
T 4fdd_A 493 SKYQHKNLLILYDAIGTLADSVGHH-LNKPEYIQMLMPPLIQKWNMLKDEDKDLF----PLLECLSSVATALQ---SGFL 564 (852)
T ss_dssp HHCCHHHHHHHHHHHHHHHHHHGGG-GCCHHHHHHHHHHHHHHHHHSCTTCTTHH----HHHHHHHHHHHHHG---GGGH
T ss_pred HHhChHHHHHHHHHHHHHHHHhhhh-hccHHHHHHHHHHHHHHHHhcccccHHHH----HHHHHHHHHHHHHh---HhHH
Confidence 3333444455677777776654332 12345777888888888888877543332 45666655532211 1222
Q ss_pred HHHHHHHHHHHHHhhcC---------------C-chhHHHHHHHHHHHHhcccCC-C-----cHHHHHHHHHHhhccCCC
Q 002385 151 KLVVEMFQHFLKVIRSN---------------H-PHFVFAAMETIMTLVIDESED-V-----SWDLLRILLASVRKENQD 208 (929)
Q Consensus 151 dLI~eLFktFF~iVr~~---------------h-p~kV~~~M~dIMs~VIEESE~-V-----P~eLLDvIL~~Ll~~~ks 208 (929)
..+..+|..++..++.. . ...+.....+.+..++...+. + ...++..|+..+-.....
T Consensus 565 ~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~ 644 (852)
T 4fdd_A 565 PYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPE 644 (852)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHhHhHHHHhcCCcHHHHHHHHhCCCChh
Confidence 33334444443333321 1 233555555555555554321 1 135778777777544444
Q ss_pred CChhhHHHHHHHHhhchHHHHHHHHHHHHh
Q 002385 209 VSPTSWKLGEKVFTKCAAKLKTNLKEAVQS 238 (929)
Q Consensus 209 ~~PaAy~LA~~VI~~CadKL~p~I~q~fnS 238 (929)
..-.|+.+-.+++..|...+.+|+..++..
T Consensus 645 vr~~a~~~l~~l~~~~~~~~~~~l~~~lp~ 674 (852)
T 4fdd_A 645 VRQSSFALLGDLTKACFQHVKPCIADFMPI 674 (852)
T ss_dssp HHHHHHHHHHHHHHHCGGGTGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 455677777888889999999988887653
No 31
>3ntk_A Maternal protein tudor; tudor domain, OB-fold, GERM cell formation, transcription; 1.80A {Drosophila melanogaster} PDB: 3nth_A* 3nti_A*
Probab=84.65 E-value=1.1 Score=43.77 Aligned_cols=42 Identities=19% Similarity=0.303 Sum_probs=34.6
Q ss_pred cccCCeEEEeeCCCCceEEEEEEEecCCCCeEEEEc-CCCccee
Q 002385 711 QLVGSRIKVWWPMDETFYKGVVDNYDPIKKKHRILY-ADGDEEI 753 (929)
Q Consensus 711 ~lVG~RVkV~WP~D~~wY~G~V~syd~~tkkH~V~Y-DDGD~E~ 753 (929)
--+|.-|-+.|+.|+.||.|+|..+.+.. ...|.| |=|..+.
T Consensus 48 ~~~G~~c~A~~~~d~~wyRa~I~~~~~~~-~~~V~fvDyGn~~~ 90 (169)
T 3ntk_A 48 LKEGALCVAQFPEDEVFYRAQIRKVLDDG-KCEVHFIDFGNNAV 90 (169)
T ss_dssp CCTTCEEEEEETTTTEEEEEEEEEECSTT-CEEEEETTTTEEEE
T ss_pred CCCCCEEEEEECCCCcEEEEEEEEECCCC-EEEEEEEecCCeEE
Confidence 34899999999999999999999999854 667777 4577776
No 32
>2hqx_A P100 CO-activator tudor domain; human P100 tudor domain, proteolytic fragment, PSI, structural genomics; 1.42A {Homo sapiens} SCOP: b.34.9.1 PDB: 2hqe_A 3omc_A* 3omg_A* 2o4x_A 2e6n_A 2o4x_B
Probab=83.94 E-value=1.3 Score=45.13 Aligned_cols=43 Identities=23% Similarity=0.424 Sum_probs=35.8
Q ss_pred cCCeEEEeeCCCCceEEEEEEEecCCCCeEEEEcCC-CcceeeecC
Q 002385 713 VGSRIKVWWPMDETFYKGVVDNYDPIKKKHRILYAD-GDEEILNLK 757 (929)
Q Consensus 713 VG~RVkV~WP~D~~wY~G~V~syd~~tkkH~V~YDD-GD~E~L~L~ 757 (929)
+|.-|-+.|. |+.||.|.|+..... ..-.|.|-| |..+.+.+.
T Consensus 68 ~G~~c~a~~~-d~~wyRa~V~~~~~~-~~~~V~~vDyGn~~~v~~~ 111 (246)
T 2hqx_A 68 RGEFCIAKFV-DGEWYRARVEKVESP-AKIHVFYIDYGNREVLPST 111 (246)
T ss_dssp TTCEEEEECT-TSCEEEEEEEEEEET-TEEEEEETTTCCEEEECGG
T ss_pred CCCEEEEEcC-CCCEEEEEEEEEcCC-CeEEEEEEeCCCeEEEeHH
Confidence 8999999999 999999999999764 467788765 999988543
No 33
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=83.71 E-value=5.3 Score=45.54 Aligned_cols=26 Identities=15% Similarity=0.263 Sum_probs=21.0
Q ss_pred hccCCCcCeehhhhHHHHHHhhhcCC
Q 002385 69 LLRRSDMDVRLSVTSCISEITRITAP 94 (929)
Q Consensus 69 LLkHKDkdVRlyVAcCLADILRIyAP 94 (929)
+|.+.+..||..++.||..+...+.+
T Consensus 416 ~l~d~~~~vr~~a~~~l~~~~~~~~~ 441 (876)
T 1qgr_A 416 LMKDPSVVVRDTAAWTVGRICELLPE 441 (876)
T ss_dssp HHTCSSHHHHHHHHHHHHHHHHHCGG
T ss_pred HhCCCCHHHHHHHHHHHHHHHHhCch
Confidence 45677788998899999988888765
No 34
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=82.61 E-value=9.1 Score=38.96 Aligned_cols=164 Identities=8% Similarity=0.118 Sum_probs=94.5
Q ss_pred HHHHHhhhhhhhc-cCCCcCeehhhhHHHHHHhhhcC-CCCCCChhHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHh
Q 002385 58 LPTMKGLITNDLL-RRSDMDVRLSVTSCISEITRITA-PDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTV 135 (929)
Q Consensus 58 ~pl~k~LVs~~LL-kHKDkdVRlyVAcCLADILRIyA-PDAPYtDdqLKDIFqLfV~qf~~LaD~sSP~F~qy~yLLEtL 135 (929)
..+...|.. .| +.+|..|+..++-||..|.+-.+ |. |.-.....|+-.++..| .|....--....+.|.+|
T Consensus 59 ~~~~~~L~~--~l~~D~n~~v~~~A~~al~~la~~l~~~~--f~~~y~~~llp~ll~~l---~dkk~~V~~aa~~al~~i 131 (249)
T 2qk1_A 59 SNLLGIYGH--IIQKDANIQAVALAAQSVELICDKLKTPG--FSKDYVSLVFTPLLDRT---KEKKPSVIEAIRKALLTI 131 (249)
T ss_dssp HHHHHHHHH--HHHHCSCHHHHHHHHHHHHHHHHHHCTTT--SCHHHHHHHHHHHHHGG---GCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH--HhccCCCHHHHHHHHHHHHHHHHhccccc--ccHHHHHHHHHHHHHHH---cCCCHHHHHHHHHHHHHH
Confidence 344444422 45 67888889999999999998887 66 33244555555555555 454433334556677777
Q ss_pred hhhceeeeeccCCchHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcccCCC--------cHHHHHHHHHHhhccCC
Q 002385 136 AKVRSCLLMLDLECDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESEDV--------SWDLLRILLASVRKENQ 207 (929)
Q Consensus 136 AeVKS~VLMlDLe~ddLI~eLFktFF~iVr~~hp~kV~~~M~dIMs~VIEESE~V--------P~eLLDvIL~~Ll~~~k 207 (929)
...=.- .+.--.-++|+..|| ..+....+ .|.......|..+++.+... +..++..|+..+-..+.
T Consensus 132 ~~~~~~-~~~~~~l~~ll~~l~----~~l~~k~~-~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~ 205 (249)
T 2qk1_A 132 CKYYDP-LASSGRNEDMLKDIL----EHMKHKTP-QIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQP 205 (249)
T ss_dssp HHHSCT-TCTTCTTHHHHHHHH----HHTTCSSH-HHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSH
T ss_pred HHHccc-cccCCcHHHHHHHHH----HHHcCCCh-HHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCH
Confidence 664110 001000335555555 44444433 67788888888999887753 34455555555533344
Q ss_pred CCChhhHHHHHHHHhhchHH-HHHHHHH
Q 002385 208 DVSPTSWKLGEKVFTKCAAK-LKTNLKE 234 (929)
Q Consensus 208 s~~PaAy~LA~~VI~~CadK-L~p~I~q 234 (929)
...-+|+.....|+.....+ |.||+..
T Consensus 206 ~VR~aA~~~l~~i~~~vG~~~~~p~l~~ 233 (249)
T 2qk1_A 206 AIRTIGFESFAILIKIFGMNTFVKTLEH 233 (249)
T ss_dssp HHHHHHHHHHHHHHHHHCSGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 44455555555555555554 7777766
No 35
>3dlm_A Histone-lysine N-methyltransferase setdb1; setdb1_human, structural genomics, structural genomics consortium, SGC, alternative splicing; 1.77A {Homo sapiens}
Probab=82.46 E-value=1.6 Score=45.36 Aligned_cols=54 Identities=20% Similarity=0.336 Sum_probs=43.2
Q ss_pred cccccccCCeEEEeeCCCC--ceEEEEEEEecCCC--CeEEEEcCCCcceeeecCcce
Q 002385 707 ALNEQLVGSRIKVWWPMDE--TFYKGVVDNYDPIK--KKHRILYADGDEEILNLKKER 760 (929)
Q Consensus 707 ~~ge~lVG~RVkV~WP~D~--~wY~G~V~syd~~t--kkH~V~YDDGD~E~L~L~~Ek 760 (929)
..+.=.||.||-..|.+.. .||.|.|..-.... .++.|.||||...++.+..-.
T Consensus 65 ~~~~l~vG~RVVA~~~~~~~~~fY~GiVaE~p~~~N~~RyLVFFDDG~~~Yv~~~~V~ 122 (213)
T 3dlm_A 65 PADKLYVGSRVVAKYKDGNQVWLYAGIVAETPNVKNKLRFLIFFDDGYASYVTQSELY 122 (213)
T ss_dssp CGGGCCTTCEEEEEEECSSCEEEEEEEEEECCCTTTTSCEEEEETTSCEEEECGGGEE
T ss_pred CccEEeEEEEEEEEecCCCCcceeeeEEEECCccCCCceEEEEEeCCCcceecCceEE
Confidence 3445569999999999764 79999999866643 379999999999998876544
No 36
>4b9w_A TDRD1, tudor domain-containing protein 1; replication; HET: 2MR; 2.10A {Mus musculus}
Probab=82.10 E-value=2.2 Score=42.46 Aligned_cols=50 Identities=16% Similarity=0.346 Sum_probs=38.2
Q ss_pred cCCeEEEeeCCCCceEEEEEEEecCCCCeEEEEc-CCCcceeeecCcceEEEee
Q 002385 713 VGSRIKVWWPMDETFYKGVVDNYDPIKKKHRILY-ADGDEEILNLKKERWELIK 765 (929)
Q Consensus 713 VG~RVkV~WP~D~~wY~G~V~syd~~tkkH~V~Y-DDGD~E~L~L~~Ek~e~l~ 765 (929)
+|.-+-+.++.|+.||.|.|....+. +...|.| |=|..+.+.+. .++.+.
T Consensus 68 ~G~~c~a~~~~d~~wyRa~V~~~~~~-~~~~V~~vDyG~~~~v~~~--~l~~l~ 118 (201)
T 4b9w_A 68 IGRPCCAFFSGDGNWYRALVKEILPS-GNVKVHFVDYGNVEEVTTD--QLQAIL 118 (201)
T ss_dssp TTCEEEEEETTTTEEEEEEEEEECTT-SCEEEEETTTCCEEEECGG--GEEECC
T ss_pred CCCEEEEEECCCCeEEEEEEEEECCC-CeEEEEEEccCCEEEEEHH--HhccCh
Confidence 68889999999999999999998764 4455666 56888877654 355443
No 37
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=81.80 E-value=8.6 Score=45.80 Aligned_cols=53 Identities=25% Similarity=0.217 Sum_probs=35.1
Q ss_pred hhHHHHHhhhhhhhccCCCcCeehhhhHHHHHHhhhcC------CC------CCCChhHHHHHHHHH
Q 002385 56 ALLPTMKGLITNDLLRRSDMDVRLSVTSCISEITRITA------PD------SPYDDELMKEFFQLA 110 (929)
Q Consensus 56 SL~pl~k~LVs~~LLkHKDkdVRlyVAcCLADILRIyA------PD------APYtDdqLKDIFqLf 110 (929)
-+.+++..|++ .|.+.+.-||.++|.||..++.+.. |+ .||-..-|..+|.++
T Consensus 493 ~l~~~l~~l~~--~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll 557 (960)
T 1wa5_C 493 QLIELMPILAT--FLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALI 557 (960)
T ss_dssp HHHHHHHHHHH--HTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--HhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHH
Confidence 45666666665 3456678899999999999988643 22 366655555555444
No 38
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=81.47 E-value=11 Score=42.91 Aligned_cols=154 Identities=5% Similarity=0.014 Sum_probs=79.3
Q ss_pred hccCCCcCeehhhhHHHHHHhhhcCCCCCCChhHHHHHHHHHHHHhcccCCCCCcc-hHHHHHHHHHhhhhceeeeeccC
Q 002385 69 LLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRY-YMKALSILDTVAKVRSCLLMLDL 147 (929)
Q Consensus 69 LLkHKDkdVRlyVAcCLADILRIyAPDAPYtDdqLKDIFqLfV~qf~~LaD~sSP~-F~qy~yLLEtLAeVKS~VLMlDL 147 (929)
+|.+.+..+|-.++.||..|.+-+.|+ .-...+..|+..++.. |.|+ ++. -....+.|..++..-. -++
T Consensus 377 ~l~~~~~~~r~~a~~~l~~i~~~~~~~--~~~~~l~~il~~l~~~---l~d~-~~~vr~~a~~~l~~l~~~~~----~~~ 446 (861)
T 2bpt_A 377 NITADNWRNREAAVMAFGSIMDGPDKV--QRTYYVHQALPSILNL---MNDQ-SLQVKETTAWCIGRIADSVA----ESI 446 (861)
T ss_dssp HTTCSSHHHHHHHHHHHHHTSSSSCHH--HHHHHHHHHHHHHHHG---GGCS-CHHHHHHHHHHHHHHHHHHG----GGS
T ss_pred HcCCCChhHHHHHHHHHHHHHcCCCHH--HHHHHHHHHHHHHHHH---cCCC-cHHHHHHHHHHHHHHHHHhh----hhc
Confidence 456788889998899999887543211 0013344444444444 4454 232 2223455555554321 122
Q ss_pred CchHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcccC-----CC---cHHHHHHHHHHhhccC--CCCChhhHHHH
Q 002385 148 ECDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESE-----DV---SWDLLRILLASVRKEN--QDVSPTSWKLG 217 (929)
Q Consensus 148 e~ddLI~eLFktFF~iVr~~hp~kV~~~M~dIMs~VIEESE-----~V---P~eLLDvIL~~Ll~~~--ks~~PaAy~LA 217 (929)
.....+..++..++..+.++ ..|.......+..+++... .+ -..++..|+..+...+ ....-.++...
T Consensus 447 ~~~~~~~~~l~~l~~~l~~~--~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al 524 (861)
T 2bpt_A 447 DPQQHLPGVVQACLIGLQDH--PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSAL 524 (861)
T ss_dssp CTTTTHHHHHHHHHHHHTSC--HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhccC--hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHH
Confidence 23345666666666666553 5677666666666665432 12 1345555555554322 12222344444
Q ss_pred HHHHhhchHHHHHHHHH
Q 002385 218 EKVFTKCAAKLKTNLKE 234 (929)
Q Consensus 218 ~~VI~~CadKL~p~I~q 234 (929)
..++..+...+.+|+.+
T Consensus 525 ~~l~~~~~~~~~~~~~~ 541 (861)
T 2bpt_A 525 TTMVEYATDTVAETSAS 541 (861)
T ss_dssp HHHHHHCCGGGHHHHHH
T ss_pred HHHHHHcchhhHHHHHH
Confidence 55666655555555443
No 39
>4b9x_A TDRD1, tudor domain-containing protein 1; replication; 2.80A {Mus musculus}
Probab=79.47 E-value=2.3 Score=43.11 Aligned_cols=44 Identities=16% Similarity=0.369 Sum_probs=36.0
Q ss_pred cCCeEEEeeCCCCceEEEEEEEecCCCCeEEEEc-CCCcceeeecC
Q 002385 713 VGSRIKVWWPMDETFYKGVVDNYDPIKKKHRILY-ADGDEEILNLK 757 (929)
Q Consensus 713 VG~RVkV~WP~D~~wY~G~V~syd~~tkkH~V~Y-DDGD~E~L~L~ 757 (929)
+|.-|-+.|+.|+.||.|.|....+. +...|.| |=|..+.+.+.
T Consensus 68 ~G~~c~a~~~~d~~WyRa~V~~~~~~-~~~~V~~vDyGn~~~v~~~ 112 (226)
T 4b9x_A 68 IGRPCCAFFSGDGNWYRALVKEILPS-GNVKVHFVDYGNVEEVTTD 112 (226)
T ss_dssp TTCEEEEEETTTTEEEEEEEEEECSS-SEEEEECTTTCCEEEEEGG
T ss_pred CCCEEEEEECCCCeEEEEEEEEECCC-CeEEEEEEecCCEEEEEHH
Confidence 68889999999999999999998764 4566776 56888887654
No 40
>2rnz_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae}
Probab=79.40 E-value=8.7 Score=35.29 Aligned_cols=65 Identities=11% Similarity=0.085 Sum_probs=43.1
Q ss_pred ccCccccCCCCcccccccCCeEEEeeCCCCceEEEEEEEecCCC--CeEEEEcCCCcceeeecCcceEEEeeCCCC
Q 002385 696 TAGKEMDSEAPALNEQLVGSRIKVWWPMDETFYKGVVDNYDPIK--KKHRILYADGDEEILNLKKERWELIKGGSS 769 (929)
Q Consensus 696 ~~G~e~~s~~~~~ge~lVG~RVkV~WP~D~~wY~G~V~syd~~t--kkH~V~YDDGD~E~L~L~~Ek~e~l~~~s~ 769 (929)
+.|.-...+......=.||.+|.|++ +..||.++|....... .+..|.|.+=...+ =+||..+..
T Consensus 11 ~~~~~~~~~~~~~~~~~vG~kv~v~~--~~~~yeAeIl~ir~~~g~~~YYVHY~g~NkRl-------DEWV~~~RI 77 (94)
T 2rnz_A 11 SSGLVPRGSHMSVDDIIIKCQCWVQK--NDEERLAEILSINTRKAPPKFYVHYVNYNKRL-------DEWITTDRI 77 (94)
T ss_dssp CCCSSCSSCSSCGGGCCTTEEEEEEC--SSCEEEEEEEEEECSSSSCEEEEECTTSCSTT-------CEEEETTTB
T ss_pred ccCCccCCCccccccccCCCEEEEEE--CCEEEEEEEEEEEEcCCCcEEEEEeCCcCccc-------ccccCHHHc
Confidence 34444443433344456999999997 8899999999977644 36888888655421 256665544
No 41
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=78.80 E-value=6.5 Score=40.97 Aligned_cols=109 Identities=11% Similarity=0.160 Sum_probs=61.9
Q ss_pred HHHhhhhhhhccCCCcCeehhhhHHHHHHhhhcCCCCCCChhHHHHHHHHHHHHhcccCCCC-Ccc-hHHHHHHHHHhhh
Q 002385 60 TMKGLITNDLLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHAS-GRY-YMKALSILDTVAK 137 (929)
Q Consensus 60 l~k~LVs~~LLkHKDkdVRlyVAcCLADILRIyAPDAPYtDdqLKDIFqLfV~qf~~LaD~s-SP~-F~qy~yLLEtLAe 137 (929)
+...|+. +|.+.+..| ..+|-||+.|.+...|+.-| .+++.+++..+. +.. ++. -.-.+.+|..|.+
T Consensus 91 ik~~ll~--~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w-----~~ll~~L~~~l~---~~~~~~~~r~~al~~l~~l~~ 159 (462)
T 1ibr_B 91 VKNYVLQ--TLGTETYRP-SSASQCVAGIACAEIPVNQW-----PELIPQLVANVT---NPNSTEHMKESTLEAIGYICQ 159 (462)
T ss_dssp HHHHHHH--HTTCCCSSS-CSHHHHHHHHHHHHGGGTCC-----TTHHHHHHHHHH---CTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH--HhCCCCchh-hHHHHHHHHHHHHhcccccc-----HHHHHHHHHHhc---cCCCCHHHHHHHHHHHHHHHH
Confidence 3344443 466778889 88999999999998775434 244555555543 221 222 1123444444433
Q ss_pred h-ceeeeeccCCchHHHHHHHHHHHHHhhcCC-chhHHHHHHHHHHHHhc
Q 002385 138 V-RSCLLMLDLECDKLVVEMFQHFLKVIRSNH-PHFVFAAMETIMTLVID 185 (929)
Q Consensus 138 V-KS~VLMlDLe~ddLI~eLFktFF~iVr~~h-p~kV~~~M~dIMs~VIE 185 (929)
- .. ++ -...+..+|..|+..+.... ...|+......+..+++
T Consensus 160 ~~~~-----~~-~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~ 203 (462)
T 1ibr_B 160 DIDP-----EQ-LQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLE 203 (462)
T ss_dssp HSCG-----GG-TGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTT
T ss_pred hCCc-----hh-hHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH
Confidence 1 11 00 13445567777777776553 45677766677766554
No 42
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=77.32 E-value=64 Score=38.14 Aligned_cols=170 Identities=15% Similarity=0.204 Sum_probs=81.2
Q ss_pred CcCeehhhhHHHHHHhhhcCCC-CCCChhHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHhhhhceeeeeccCCc---
Q 002385 74 DMDVRLSVTSCISEITRITAPD-SPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDLEC--- 149 (929)
Q Consensus 74 DkdVRlyVAcCLADILRIyAPD-APYtDdqLKDIFqLfV~qf~~LaD~sSP~F~qy~yLLEtLAeVKS~VLMlDLe~--- 149 (929)
|.+|.-.++-||..+++.|-.+ .|| |-.++.+++..|.. .. ...+++++..+... + -.|=.+
T Consensus 706 ~~~v~e~~~~~~~~~~~~~~~~~~p~----l~~~~~~l~~~~~~---~~---~~~~l~l~~~~i~~--~--~~~~~~~~~ 771 (971)
T 2x1g_F 706 EIDVLEAACSAMKHAITNLRSSFQPM----LQDLCLFIVASFQT---RC---CAPTLEISKTAIVM--F--FKDEGCKPL 771 (971)
T ss_dssp CHHHHHHHHHHHHHHHHHHHC--CTH----HHHHHHHHHHHCC-----C---CHHHHHHHHHHHTT--C--CC-----HH
T ss_pred cHHHHHHHHHHHHHHHHhhhhhcccc----HHHHHHHHHHHHhc---CC---chHHHHHHHHHHHH--h--CCCcchHHH
Confidence 5567667777788888887665 566 77788888877754 11 13355555555332 1 001012
Q ss_pred -hHHHHHHHHHHHHHhhc-------CCchhHHHHHHHHHHHHhcccC------CC-cHHHHHHHHHHhhccCCCCChhhH
Q 002385 150 -DKLVVEMFQHFLKVIRS-------NHPHFVFAAMETIMTLVIDESE------DV-SWDLLRILLASVRKENQDVSPTSW 214 (929)
Q Consensus 150 -ddLI~eLFktFF~iVr~-------~hp~kV~~~M~dIMs~VIEESE------~V-P~eLLDvIL~~Ll~~~ks~~PaAy 214 (929)
..++..++..+|.++.. ++|. |....-.++..++.-.- .+ =..++.+++..+.-.+.....++.
T Consensus 772 l~~~~~~~~~~~~~~l~~~~~~~~~~~pd-~~~~~f~ll~~~l~~~p~~~~~s~~~l~~i~~~~~~~l~~~~~~~~~s~~ 850 (971)
T 2x1g_F 772 MQQLLREFIQHSFKLFESTPEQNFSNISD-TMETFFGCLTQIIKKIPQVLEDKTLAYDRLVFYAQRGMTLPESGAIRNSI 850 (971)
T ss_dssp HHHHHHHHHHHHHHHHTSCTTTHHHHTHH-HHHHHHHHHHHHHHSSGGGGGCTTSCHHHHHHHHHHHHTSSCSSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcccccCCccCch-HHHHHHHHHHHHHHhCcHHHcCCcccHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 24555555556654433 2343 33333333333332211 12 245566666666543333333344
Q ss_pred HHHHHHHhhc--hHHHHHHHHHHH--------Hhc-CCC----CchhHHHHHHHhccCC
Q 002385 215 KLGEKVFTKC--AAKLKTNLKEAV--------QSR-GIA----LDDYAEIVACICGSDD 258 (929)
Q Consensus 215 ~LA~~VI~~C--adKL~p~I~q~f--------nS~-Gi~----ld~Y~eIV~sI~q~~s 258 (929)
.+-..++..+ ...++.++..+. ..+ |.. ++++.+++..|+...+
T Consensus 851 ~fl~~~i~~~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~s~~~~~a~~l~~l~~~~~ 909 (971)
T 2x1g_F 851 QFLTHFVMQSRNHAHVTEVVLATGEQTLYTAMMCVGYLTPRSQVDKFADILLAMNRKYA 909 (971)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGGGGGHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCchHHHHHHHHHhHHHHHHHHHHHhcccCChhHHHHHHHHHHHHHHHCc
Confidence 4333344442 222333333222 221 111 5778888877765443
No 43
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*
Probab=75.48 E-value=3.9 Score=39.37 Aligned_cols=51 Identities=24% Similarity=0.277 Sum_probs=36.9
Q ss_pred ccCCeEEEeeCCCC----ceEEEEEEEecCCCCeEEEEcCCCcc---eeeecCcceEEEeeC
Q 002385 712 LVGSRIKVWWPMDE----TFYKGVVDNYDPIKKKHRILYADGDE---EILNLKKERWELIKG 766 (929)
Q Consensus 712 lVG~RVkV~WP~D~----~wY~G~V~syd~~tkkH~V~YDDGD~---E~L~L~~Ek~e~l~~ 766 (929)
.+|..|.|||..+. .||.|+|+.... ..|.|.|++=|. |++. -++++.+..
T Consensus 62 ~~gd~VEV~~~~~d~ep~gWw~a~I~~~kg--~f~~V~y~~~~~~~~EiV~--~~rlR~~n~ 119 (128)
T 3h8z_A 62 TEGDEVEVYSRANEQEPCGWWLARVRMMKG--DFYVIEYAACDATYNEIVT--LERLRPVNP 119 (128)
T ss_dssp CTTCEEEEEECC---CCCEEEEEEEEEEET--TEEEEEETTC----CEEEC--GGGEEECCC
T ss_pred CCCCEEEEEecCCCCCcCccEEEEEEEeeC--CEEEEEEcCCCCCcceEEe--hhheEeCCC
Confidence 48999999999877 799999999984 689999986443 4444 455665543
No 44
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=74.80 E-value=40 Score=39.18 Aligned_cols=64 Identities=16% Similarity=0.119 Sum_probs=41.4
Q ss_pred hccCCCcCeehhhhHHHHHHhhhcCCCCCCChhHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHhhh
Q 002385 69 LLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAK 137 (929)
Q Consensus 69 LLkHKDkdVRlyVAcCLADILRIyAPDAPYtDdqLKDIFqLfV~qf~~LaD~sSP~F~qy~yLLEtLAe 137 (929)
+|.+.+..||..++-||..|...+.+.. ....+..++..++..|. |.+...-......|.+|++
T Consensus 408 ~l~d~~~~Vr~~a~~~l~~l~~~~~~~~--~~~~~~~ll~~L~~~L~---d~~~~vr~~a~~aL~~l~~ 471 (852)
T 4fdd_A 408 CLSDKKALVRSITCWTLSRYAHWVVSQP--PDTYLKPLMTELLKRIL---DSNKRVQEAACSAFATLEE 471 (852)
T ss_dssp HTTCSSHHHHHHHHHHHHHTHHHHHHSC--TTTTHHHHHHHHHHHHT---CSSHHHHHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHHHHHhccch--HHHHHHHHHHHHHHHHh---CCCHHHHHHHHHHHHHHHH
Confidence 5788899999999999999988775532 23346667777776653 3332233334555555554
No 45
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=74.54 E-value=12 Score=42.80 Aligned_cols=124 Identities=10% Similarity=0.126 Sum_probs=66.4
Q ss_pred hhHHHHHhhhhh-hhccCCCcCeehhhhHHHHHHhhhcCCCCCCChhHHHHHHHHHHHHhcc-cCCCCCcchHHHHHHHH
Q 002385 56 ALLPTMKGLITN-DLLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFEN-LSHASGRYYMKALSILD 133 (929)
Q Consensus 56 SL~pl~k~LVs~-~LLkHKDkdVRlyVAcCLADILRIyAPDAPYtDdqLKDIFqLfV~qf~~-LaD~sSP~F~qy~yLLE 133 (929)
.+..+...|+.. ..++|.+..|..-++-||..| . ++ ..+.. ..+..|.. |.+. ++ .-++..|.
T Consensus 271 ~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l---~-~~-----~~l~~---~a~~~L~~~L~~~-d~--~vr~~aL~ 335 (618)
T 1w63_A 271 AMNDILAQVATNTETSKNVGNAILYETVLTIMDI---K-SE-----SGLRV---LAINILGRFLLNN-DK--NIRYVALT 335 (618)
T ss_dssp TTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHS---C-CC-----HHHHH---HHHHHHHHHHTCS-ST--TTHHHHHH
T ss_pred HHHHHHHHHHhccccccchHHHHHHHHHHHHHhc---C-CC-----HHHHH---HHHHHHHHHHhCC-CC--chHHHHHH
Confidence 333444444332 245677777888888887764 1 21 22222 22222222 3332 22 22344556
Q ss_pred HhhhhceeeeeccCCchHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcccCCCcHHHHHHHHHHhhc
Q 002385 134 TVAKVRSCLLMLDLECDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESEDVSWDLLRILLASVRK 204 (929)
Q Consensus 134 tLAeVKS~VLMlDLe~ddLI~eLFktFF~iVr~~hp~kV~~~M~dIMs~VIEESE~VP~eLLDvIL~~Ll~ 204 (929)
+|..+-.. ...++...+..||....+ -+..|...-.++|..+..+.. + ..++..|+.++..
T Consensus 336 ~L~~i~~~-------~p~~~~~~~~~i~~~l~d-~d~~Ir~~alelL~~l~~~~n-v-~~iv~eL~~~l~~ 396 (618)
T 1w63_A 336 SLLKTVQT-------DHNAVQRHRSTIVDCLKD-LDVSIKRRAMELSFALVNGNN-I-RGMMKELLYFLDS 396 (618)
T ss_dssp HHHHHHHH-------HHHHHGGGHHHHHHGGGS-SCHHHHHHHHHHHHHHCCSSS-T-HHHHHHHHHHHHH
T ss_pred HHHHHHhh-------CHHHHHHHHHHHHHHccC-CChhHHHHHHHHHHHHccccc-H-HHHHHHHHHHHHh
Confidence 66555321 124455555666666553 346677777888888887643 2 5677777777764
No 46
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=74.49 E-value=18 Score=41.24 Aligned_cols=107 Identities=9% Similarity=0.051 Sum_probs=61.9
Q ss_pred hccCCCcCeehhhhHHHHHHhhhcCCCCCCChhHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHhhhhceeeeeccCC
Q 002385 69 LLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDLE 148 (929)
Q Consensus 69 LLkHKDkdVRlyVAcCLADILRIyAPDAPYtDdqLKDIFqLfV~qf~~LaD~sSP~F~qy~yLLEtLAeVKS~VLMlDLe 148 (929)
+|.+.+..||-.++.||..|..-+.|+. -...+..++..++..| .|++...-...+..|.+++..-.- .+.
T Consensus 374 ~l~~~~~~~r~~a~~~l~~i~~~~~~~~--~~~~~~~~l~~l~~~l---~d~~~~vr~~a~~~l~~~~~~~~~----~~~ 444 (876)
T 1qgr_A 374 HIKNPDWRYRDAAVMAFGCILEGPEPSQ--LKPLVIQAMPTLIELM---KDPSVVVRDTAAWTVGRICELLPE----AAI 444 (876)
T ss_dssp HTTCSSHHHHHHHHHHHHHTSSSSCHHH--HHHHHHHHHHHHHHHH---TCSSHHHHHHHHHHHHHHHHHCGG----GTS
T ss_pred HccCCChHHHHHHHHHHHHHHcCCCHHH--HHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHhCch----hcc
Confidence 4567888899988889988875443320 0134555666665554 455433344556667776654211 111
Q ss_pred chHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcc
Q 002385 149 CDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDE 186 (929)
Q Consensus 149 ~ddLI~eLFktFF~iVr~~hp~kV~~~M~dIMs~VIEE 186 (929)
....+..++..++..+.+. ..|.......|..+++.
T Consensus 445 ~~~~l~~~l~~l~~~l~~~--~~v~~~a~~al~~l~~~ 480 (876)
T 1qgr_A 445 NDVYLAPLLQCLIEGLSAE--PRVASNVCWAFSSLAEA 480 (876)
T ss_dssp STTTHHHHHHHHHHHTTSC--HHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHH
Confidence 2345666777777766652 56666555555555554
No 47
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=74.42 E-value=18 Score=38.95 Aligned_cols=118 Identities=14% Similarity=0.113 Sum_probs=55.5
Q ss_pred hccCCCcCeehhhhHHHHHHhhhcCCCCCCChhHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHhhhhceeeeeccCC
Q 002385 69 LLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDLE 148 (929)
Q Consensus 69 LLkHKDkdVRlyVAcCLADILRIyAPDAPYtDdqLKDIFqLfV~qf~~LaD~sSP~F~qy~yLLEtLAeVKS~VLMlDLe 148 (929)
++.+.|..||..++.+|..|.+.+.++ ..+.+++.+|+..+ .|.+...-...+..|..|+.. ++
T Consensus 172 l~~d~~~~VR~~a~~~l~~l~~~~~~~-----~~~~~l~~~l~~~~---~d~~~~vr~~a~~~l~~l~~~--------~~ 235 (588)
T 1b3u_A 172 LCSDDTPMVRRAAASKLGEFAKVLELD-----NVKSEIIPMFSNLA---SDEQDSVRLLAVEACVNIAQL--------LP 235 (588)
T ss_dssp HHTCSCHHHHHHHHHHHHHHHHTSCHH-----HHHHTHHHHHHHHH---TCSCHHHHTTHHHHHHHHHHH--------SC
T ss_pred HhCCCCHHHHHHHHHHHHHHHHHhcHH-----hHHHHHHHHHHHHh---cCCcHHHHHHHHHHHHHHHHh--------CC
Confidence 456777788888888888877765321 22333444444333 233211111122333333321 22
Q ss_pred chHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcccC--CCcHHHHHHHHHHhh
Q 002385 149 CDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESE--DVSWDLLRILLASVR 203 (929)
Q Consensus 149 ~ddLI~eLFktFF~iVr~~hp~kV~~~M~dIMs~VIEESE--~VP~eLLDvIL~~Ll 203 (929)
.+.+...++..+..... +....|+......|..++.-.. .+...++..++.-+.
T Consensus 236 ~~~~~~~~~~~l~~~~~-d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~ 291 (588)
T 1b3u_A 236 QEDLEALVMPTLRQAAE-DKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMK 291 (588)
T ss_dssp HHHHHHHTHHHHHHHHT-CSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcc-CCCHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHhC
Confidence 23333334444444433 3344577666666666654321 233445555555543
No 48
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=73.14 E-value=5.9 Score=40.14 Aligned_cols=82 Identities=21% Similarity=0.246 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHhcccCCchhhHHhhHHHHHhhhhhhhccCCCcCeehhhhHHHHHHhhhcCCCC-----CCC----hh
Q 002385 31 VINLLDKVEHLLANVEQAPSRSMRDALLPTMKGLITNDLLRRSDMDVRLSVTSCISEITRITAPDS-----PYD----DE 101 (929)
Q Consensus 31 LLKRLkkL~~eLs~vDQ~pvdS~~~SL~pl~k~LVs~~LLkHKDkdVRlyVAcCLADILRIyAPDA-----PYt----Dd 101 (929)
....|.-|..+|......... ....+..+++.| ..+|.|.|.+||-.+.-||++|+|++-+.. +|- ..
T Consensus 156 ~~~~l~~l~~~l~~fg~~~~~-~k~~l~~i~~~l--~k~l~d~~~~VR~aA~~l~~~ly~~~G~~~~~~~~~~l~~lkp~ 232 (278)
T 4ffb_C 156 IAAAANCVYELMAAFGLTNVN-VQTFLPELLKHV--PQLAGHGDRNVRSQTMNLIVEIYKVTGNNSDLLEEILFKKLKPI 232 (278)
T ss_dssp HHHHHHHHHHHHHHHTTTTCC-HHHHHHHHGGGH--HHHHTCSSHHHHHHHHHHHHHHHTC-----------CTTSSCHH
T ss_pred HHHHHHHHHHHHHHhCCCcCC-chhHHHHHHHHH--HHHHhCCcHHHHHHHHHHHHHHHHHhCcchhhhhhhhhhcCCHH
Confidence 334445555555554332222 111223343333 357999999999999999999999987653 342 24
Q ss_pred HHHHHHHHHHHHhcccCC
Q 002385 102 LMKEFFQLAVSAFENLSH 119 (929)
Q Consensus 102 qLKDIFqLfV~qf~~LaD 119 (929)
++++|+.. |..+.+
T Consensus 233 ~~k~le~~----f~k~~~ 246 (278)
T 4ffb_C 233 QVKDLHKL----FAKVGD 246 (278)
T ss_dssp HHHHHHHH----HSCCCC
T ss_pred HHHHHHHH----HHhcCC
Confidence 67776654 455544
No 49
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=70.31 E-value=6 Score=40.10 Aligned_cols=141 Identities=10% Similarity=0.078 Sum_probs=65.6
Q ss_pred hccCCCcCeehhhhHHHHHHhhhcCCCCCCChhHHHHHHHHHHHH-hc-ccCCCCCcchHHHHHHHHHhhhhceeeeecc
Q 002385 69 LLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSA-FE-NLSHASGRYYMKALSILDTVAKVRSCLLMLD 146 (929)
Q Consensus 69 LLkHKDkdVRlyVAcCLADILRIyAPDAPYtDdqLKDIFqLfV~q-f~-~LaD~sSP~F~qy~yLLEtLAeVKS~VLMlD 146 (929)
+|.-+|.-|...+.-||..++..+.+...... ...-+...|+.. +. .|+++....-...+..|-.+...-
T Consensus 63 ~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~-~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~------- 134 (278)
T 4ffb_C 63 YITDSNVVAQEQAIVALNSLIDAFASSSLKNA-HNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLD------- 134 (278)
T ss_dssp HTTCSSHHHHHHHHHHHHHHHTTCC---CCHH-HHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTS-------
T ss_pred HhccchHHHHHHHHHHHHHHHHHhhhhhcccc-hhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhc-------
Confidence 44455555555566678888887776643322 222222333332 22 366654333333333333332211
Q ss_pred CCchHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhccc--CCCc-HHHHHHHHHHhhccCCCCChhhHHHHHHHHh
Q 002385 147 LECDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDES--EDVS-WDLLRILLASVRKENQDVSPTSWKLGEKVFT 222 (929)
Q Consensus 147 Le~ddLI~eLFktFF~iVr~~hp~kV~~~M~dIMs~VIEES--E~VP-~eLLDvIL~~Ll~~~ks~~PaAy~LA~~VI~ 222 (929)
...+. ++..++.......| +|.......|..+|.+. ..++ ..++..|+..+.+--....+.-+.-|..++.
T Consensus 135 ~~~~~----~~e~l~~~l~~Knp-kv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~ 208 (278)
T 4ffb_C 135 TSITQ----SVELVIPFFEKKLP-KLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIV 208 (278)
T ss_dssp SSSHH----HHHHHGGGGGCSCH-HHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHH
T ss_pred CcHHH----HHHHHHHHHhccCH-HHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 01122 23334444444444 56666667777888884 3454 4456665554443223444555555544443
No 50
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=69.57 E-value=22 Score=34.90 Aligned_cols=138 Identities=9% Similarity=0.076 Sum_probs=88.5
Q ss_pred hccCCCcCeehhhhHHHHHHhhhcCCCCCCChhHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHhhhhceeeeeccCC
Q 002385 69 LLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDLE 148 (929)
Q Consensus 69 LLkHKDkdVRlyVAcCLADILRIyAPDAPYtDdqLKDIFqLfV~qf~~LaD~sSP~F~qy~yLLEtLAeVKS~VLMlDLe 148 (929)
.|..+|-.+|.-++.+|..++.-+ |. +....+.+|+..+...|. .|.+..-....+..|..|+.. +--+
T Consensus 23 ~l~s~~w~~R~~a~~~L~~l~~~~-~~--~~~~~~~~i~~~L~~~l~--kd~~~~V~~~a~~~l~~la~~----l~~~-- 91 (242)
T 2qk2_A 23 KLEEKKWTLRKESLEVLEKLLTDH-PK--LENGEYGALVSALKKVIT--KDSNVVLVAMAGKCLALLAKG----LAKR-- 91 (242)
T ss_dssp HHTCSSHHHHHHHHHHHHHHHHHC-SS--BCCCCCHHHHHHHHHHHH--HCSCHHHHHHHHHHHHHHHHH----HGGG--
T ss_pred hhccCCHHHHHHHHHHHHHHHccC-CC--CCCCCHHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHHHHH----Hhhh--
Confidence 457889999999999999999863 33 222335677777766652 145444556677777777742 1111
Q ss_pred chHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcccCCCcHHHHHHHHHHhhccCCCCChhhHHHHHHHHhhc
Q 002385 149 CDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESEDVSWDLLRILLASVRKENQDVSPTSWKLGEKVFTKC 224 (929)
Q Consensus 149 ~ddLI~eLFktFF~iVr~~hp~kV~~~M~dIMs~VIEESE~VP~eLLDvIL~~Ll~~~ks~~PaAy~LA~~VI~~C 224 (929)
-...+..++..++....+. ...|+......|..++.... ...++..|+..|.. .+|..+.-+-..|..+
T Consensus 92 ~~~~~~~ilp~ll~~l~d~-~~~vr~~a~~aL~~~~~~~~--~~~ll~~l~~~l~~----~~~~vr~~~l~~l~~~ 160 (242)
T 2qk2_A 92 FSNYASACVPSLLEKFKEK-KPNVVTALREAIDAIYASTS--LEAQQESIVESLSN----KNPSVKSETALFIARA 160 (242)
T ss_dssp GHHHHHHHHHHHHHGGGCC-CHHHHHHHHHHHHHHHTTSC--HHHHHHHHHHHTTC----SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHcC----CChHHHHHHHHHHHHH
Confidence 2467778888888877754 35687888877888877543 24567777766642 3455555555555554
No 51
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=68.19 E-value=46 Score=36.17 Aligned_cols=101 Identities=17% Similarity=0.186 Sum_probs=51.4
Q ss_pred hccCCC-cCeehhhhHHHHHHhhhcCCCCCCChhHHHH-----HHHHHHHHhcccCCCCCcchHHHHHHHHHhhhhceee
Q 002385 69 LLRRSD-MDVRLSVTSCISEITRITAPDSPYDDELMKE-----FFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCL 142 (929)
Q Consensus 69 LLkHKD-kdVRlyVAcCLADILRIyAPDAPYtDdqLKD-----IFqLfV~qf~~LaD~sSP~F~qy~yLLEtLAeVKS~V 142 (929)
||.+.+ ..||..++.||..|..- +.+.... +...++.. |.+.+...-.+....|.+|+....
T Consensus 125 lL~~~~~~~v~~~A~~~L~~l~~~-------~~~~~~~~~~~g~i~~L~~l---L~~~~~~v~~~a~~aL~~l~~~~~-- 192 (528)
T 4b8j_A 125 FLTREDFPQLQFEAAWALTNIASG-------TSENTKVVIDHGAVPIFVKL---LGSSSDDVREQAVWALGNVAGDSP-- 192 (528)
T ss_dssp HHTCTTCHHHHHHHHHHHHHHHTS-------CHHHHHHHHHTTHHHHHHHH---TTCSCHHHHHHHHHHHHHHHHTCH--
T ss_pred HhCCCCCHHHHHHHHHHHHHHhCC-------CHHHHHHHHhCCcHHHHHHH---hcCCCHHHHHHHHHHHHHHhCCCh--
Confidence 677776 89999999999999842 1222222 33333433 344333334445666666653210
Q ss_pred eeccCCchHHHHH--HHHHHHHHhhcCCchhHHHHHHHHHHHHhcc
Q 002385 143 LMLDLECDKLVVE--MFQHFLKVIRSNHPHFVFAAMETIMTLVIDE 186 (929)
Q Consensus 143 LMlDLe~ddLI~e--LFktFF~iVr~~hp~kV~~~M~dIMs~VIEE 186 (929)
++-+.+.+ .+..++..+..+....|......+|..+...
T Consensus 193 -----~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~ 233 (528)
T 4b8j_A 193 -----KCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRG 233 (528)
T ss_dssp -----HHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCS
T ss_pred -----hhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC
Confidence 01122222 3444444443333445555555555555544
No 52
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=67.81 E-value=54 Score=35.28 Aligned_cols=26 Identities=15% Similarity=0.215 Sum_probs=14.4
Q ss_pred hccCCCcCeehhhhHHHHHHhhhcCC
Q 002385 69 LLRRSDMDVRLSVTSCISEITRITAP 94 (929)
Q Consensus 69 LLkHKDkdVRlyVAcCLADILRIyAP 94 (929)
++.+.+-.||..++.||..|.+.+-+
T Consensus 410 ~~~d~~~~vr~~~~~~l~~l~~~~~~ 435 (588)
T 1b3u_A 410 LAEDAKWRVRLAIIEYMPLLAGQLGV 435 (588)
T ss_dssp HHTCSSHHHHHHHHHHHHHHHHHHCG
T ss_pred HhcCCCchHHHHHHHHHHHHHHHcCH
Confidence 34455555666666666666555443
No 53
>1wgs_A MYST histone acetyltransferase 1; tudor domain, MYST family, struct genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.34.13.3
Probab=67.57 E-value=5 Score=38.55 Aligned_cols=50 Identities=14% Similarity=0.096 Sum_probs=36.1
Q ss_pred ccCCeEEEeeCCCCceEEEEEEEecC----CCCeEEEEcCCCcceeeecCcceEEEeeCCCC
Q 002385 712 LVGSRIKVWWPMDETFYKGVVDNYDP----IKKKHRILYADGDEEILNLKKERWELIKGGSS 769 (929)
Q Consensus 712 lVG~RVkV~WP~D~~wY~G~V~syd~----~tkkH~V~YDDGD~E~L~L~~Ek~e~l~~~s~ 769 (929)
.||.+|.|||+ |..||.+.|..... ...++.|.|.+=... -=+||..+..
T Consensus 14 ~vGe~v~~~~~-d~~~y~AkIl~i~~~~~~~~~~YyVHY~gwNkR-------~DEWV~~~ri 67 (133)
T 1wgs_A 14 EIGETYLCRRP-DSTWHSAEVIQSRVNDQEGREEFYVHYVGFNRR-------LDEWVDKNRL 67 (133)
T ss_dssp CTTSEEEEEET-TTEEEEEEEEEEEEETTTTEEEEEEECTTTCSS-------CCEEECTTTS
T ss_pred CCCCEEEEEeC-CCCEEEEEEEEEEeccCCCceEEEEeccCcCCC-------ceeecChhhc
Confidence 48999999998 78999999998663 234688888853321 1257766555
No 54
>3bdl_A Staphylococcal nuclease domain-containing protein 1; staphylococcal nuclease OB fold, tudor domain, cytoplasm, HOST-virus interaction, nucleus; HET: CIT; 1.90A {Homo sapiens}
Probab=66.66 E-value=6 Score=45.37 Aligned_cols=45 Identities=20% Similarity=0.368 Sum_probs=37.2
Q ss_pred ccCCeEEEeeCCCCceEEEEEEEecCCCCeEEEEcC-CCcceeeecCc
Q 002385 712 LVGSRIKVWWPMDETFYKGVVDNYDPIKKKHRILYA-DGDEEILNLKK 758 (929)
Q Consensus 712 lVG~RVkV~WP~D~~wY~G~V~syd~~tkkH~V~YD-DGD~E~L~L~~ 758 (929)
.+|.-|-+.|. |+.||.+.|..++. .+...|.|- =|..+.+.+..
T Consensus 413 ~~G~~c~a~~~-d~~wyRa~I~~v~~-~~~~~V~fvDyGn~e~v~~~~ 458 (570)
T 3bdl_A 413 RRGEFCIAKFV-DGEWYRARVEKVES-PAKIHVFYIDYGNREVLPSTR 458 (570)
T ss_dssp CTTCEEEEECT-TSCEEEEEEEEEEE-TTEEEEEETTTCCEEEECGGG
T ss_pred CcCCEEEEEEC-CCCEEEEEEEEEcC-CCeEEEEEEeCCCeEEEEHHH
Confidence 38999999999 99999999999997 466777775 59999876553
No 55
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=65.95 E-value=14 Score=44.67 Aligned_cols=37 Identities=11% Similarity=0.126 Sum_probs=28.6
Q ss_pred HhhHHHHHhhhhhhhccCCCcCeehhhhHHHHHHhhhcC
Q 002385 55 DALLPTMKGLITNDLLRRSDMDVRLSVTSCISEITRITA 93 (929)
Q Consensus 55 ~SL~pl~k~LVs~~LLkHKDkdVRlyVAcCLADILRIyA 93 (929)
.-|.+++..|+. .|.|.+..|+.++|.+|.-|.+-+.
T Consensus 536 ~~l~~vl~~ll~--~l~~~~~~V~~~A~~al~~l~~~~~ 572 (1049)
T 3m1i_C 536 NFLRTVILKLFE--FMHETHEGVQDMACDTFIKIVQKCK 572 (1049)
T ss_dssp HHHHHHHHHHHH--HTTSSCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH--HhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 346667777776 5788899999999999988887654
No 56
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=65.23 E-value=48 Score=37.79 Aligned_cols=24 Identities=13% Similarity=0.278 Sum_probs=21.2
Q ss_pred hccCCCcCeehhhhHHHHHHhhhc
Q 002385 69 LLRRSDMDVRLSVTSCISEITRIT 92 (929)
Q Consensus 69 LLkHKDkdVRlyVAcCLADILRIy 92 (929)
||.+.|..||..+-.+|..|.+..
T Consensus 321 ~L~~~d~~vr~~aL~~L~~i~~~~ 344 (618)
T 1w63_A 321 FLLNNDKNIRYVALTSLLKTVQTD 344 (618)
T ss_dssp HHTCSSTTTHHHHHHHHHHHHHHH
T ss_pred HHhCCCCchHHHHHHHHHHHHhhC
Confidence 688999999999999999999763
No 57
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=64.39 E-value=44 Score=34.74 Aligned_cols=125 Identities=11% Similarity=0.115 Sum_probs=62.8
Q ss_pred ccCCCcCeehhhhHHHHHHhhhc-------C-------C--CCCCC--hhHHHHHHHHHHHHhcccCC-CCCcchHH---
Q 002385 70 LRRSDMDVRLSVTSCISEITRIT-------A-------P--DSPYD--DELMKEFFQLAVSAFENLSH-ASGRYYMK--- 127 (929)
Q Consensus 70 LkHKDkdVRlyVAcCLADILRIy-------A-------P--DAPYt--DdqLKDIFqLfV~qf~~LaD-~sSP~F~q--- 127 (929)
+.+.+.+||..+.-++..+.+.- . | ...+. ...+..|+..++..|....+ .++..+.-
T Consensus 268 ~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~ 347 (462)
T 1ibr_B 268 MKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKA 347 (462)
T ss_dssp HHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHH
T ss_pred HcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHH
Confidence 45778888887777776666542 0 0 11111 12456666666666654321 11222233
Q ss_pred HHHHHHHhhhhceeeeeccCCchHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcccC-----CCcHHHHHHHHHHh
Q 002385 128 ALSILDTVAKVRSCLLMLDLECDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESE-----DVSWDLLRILLASV 202 (929)
Q Consensus 128 y~yLLEtLAeVKS~VLMlDLe~ddLI~eLFktFF~iVr~~hp~kV~~~M~dIMs~VIEESE-----~VP~eLLDvIL~~L 202 (929)
....|..|+.+- + +.++..++..+.....+. .-.+.......|..+.+... ..-..++..|+..|
T Consensus 348 a~~~L~~l~~~~--------~-~~~~~~~~~~l~~~l~~~-~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l 417 (462)
T 1ibr_B 348 AGVCLMLLATCC--------E-DDIVPHVLPFIKEHIKNP-DWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELM 417 (462)
T ss_dssp HHHHHHHHHHHT--------T-TTHHHHHHHHHHHHTTCS-SHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGG
T ss_pred HHHHHHHHHHhc--------c-HHHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHh
Confidence 344555554432 1 244455555555544443 34455555566666665432 11145676666666
Q ss_pred hc
Q 002385 203 RK 204 (929)
Q Consensus 203 l~ 204 (929)
..
T Consensus 418 ~d 419 (462)
T 1ibr_B 418 KD 419 (462)
T ss_dssp GC
T ss_pred cC
Confidence 43
No 58
>2eko_A Histone acetyltransferase htatip; chromo domain, histone tail, chromatin organization modifier, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=63.71 E-value=9.5 Score=34.47 Aligned_cols=53 Identities=19% Similarity=0.221 Sum_probs=39.6
Q ss_pred cccccCCeEEEeeC---CCCceEEEEEEEecCCC--CeEEEEcCCCcceeeecCcceE-EEeeCCCC
Q 002385 709 NEQLVGSRIKVWWP---MDETFYKGVVDNYDPIK--KKHRILYADGDEEILNLKKERW-ELIKGGSS 769 (929)
Q Consensus 709 ge~lVG~RVkV~WP---~D~~wY~G~V~syd~~t--kkH~V~YDDGD~E~L~L~~Ek~-e~l~~~s~ 769 (929)
..-.+|.+|.|+++ .+..||.++|....... .+..|.|.+=+. +| +||..+..
T Consensus 8 ~~~~vG~kv~v~~~~~~~~~~~y~AkIl~i~~~~~~~~YyVHY~g~Nk--------RlDEWV~~~rl 66 (87)
T 2eko_A 8 GEIIEGCRLPVLRRNQDNEDEWPLAEILSVKDISGRKLFYVHYIDFNR--------RLDEWVTHERL 66 (87)
T ss_dssp CSCCTTCEEEBCEECTTCCEECCEEEEEEECCSSSCCCEEEEECSSCS--------CCCEEECTTTB
T ss_pred ccccCCCEEEEEEcccCCCCeEEEEEEEEEEEcCCCcEEEEEeCCCCc--------ccccccCHhHc
Confidence 34459999999997 58899999999988753 368888875443 33 67766555
No 59
>3tj1_A RNA polymerase I-specific transcription initiatio RRN3; heat repeat, transcription factor, nucleus; 2.85A {Saccharomyces cerevisiae}
Probab=63.67 E-value=47 Score=39.45 Aligned_cols=145 Identities=8% Similarity=0.063 Sum_probs=95.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcccCCchhhHHhhHHHHHhhhhh-hhccCCCcCeehhhhH--HHHHHhhhcCCCCCCCh
Q 002385 24 PPSPVDEVINLLDKVEHLLANVEQAPSRSMRDALLPTMKGLITN-DLLRRSDMDVRLSVTS--CISEITRITAPDSPYDD 100 (929)
Q Consensus 24 ppiS~dELLKRLkkL~~eLs~vDQ~pvdS~~~SL~pl~k~LVs~-~LLkHKDkdVRlyVAc--CLADILRIyAPDAPYtD 100 (929)
.+++..+|...|+.|..+.+.++.. +...|..+|++- ..+...+.=|++|+.- .|+=. ..
T Consensus 108 d~~~~~~L~~~L~aLs~~Vs~Ld~~-------~~~~LV~aIL~~~~W~~r~~~~v~~Y~~FL~~LvSa----------~~ 170 (649)
T 3tj1_A 108 ERINDKNLNILLDILSSNINRIESS-------RGTFLIQSIINFEKWWELPPHTLSKYIYFIKILCSS----------IP 170 (649)
T ss_dssp TSCCHHHHHHHHHHHHHTGGGGCSG-------GGHHHHHHHHTCTTGGGSCHHHHHHHHHHHHHHHHH----------CG
T ss_pred CcCCHHHHHHHHHHHHhhhhhcCch-------hHHHHHHHHhCCchhccCCHHHHHHHHHHHHHHHhc----------cH
Confidence 3578999999999999999998752 334688888888 8998888878887752 12210 13
Q ss_pred hHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHhhhhceeeeeccCCchHHHHHHHHHHHHHhhcCCc------hhHHH
Q 002385 101 ELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDLECDKLVVEMFQHFLKVIRSNHP------HFVFA 174 (929)
Q Consensus 101 dqLKDIFqLfV~qf~~LaD~sSP~F~qy~yLLEtLAeVKS~VLMlDLe~ddLI~eLFktFF~iVr~~hp------~kV~~ 174 (929)
..|..|+..+|..|..- .....+.+.+|..|.++ |..-+..++.++...+| ..+..
T Consensus 171 ~yl~~vl~mLV~~F~~~----~~~~~~~H~~L~~Il~l--------------vP~s~~~L~~iL~~~FP~~~~s~~~~~~ 232 (649)
T 3tj1_A 171 KWWQDVSMILVSCFILP----IKQTVCHHDMLKYFLRM--------------IPSSMGFIDTYLAKFFPNKNDTRRKLVN 232 (649)
T ss_dssp GGHHHHHHHHHHGGGSC----HHHHHHHHHHHHHHHHH--------------CGGGHHHHHHHHHHTCCCTTSCHHHHHH
T ss_pred HHHHHHHHHHHHhccCC----CcccHHHHHHHHHHHHH--------------cCCCHHHHHHHHHHhCCCCCCchhHHHH
Confidence 67999999999998631 11234456666666543 22223344444444333 33556
Q ss_pred HHHHHHHHHhcccCCCcHHHHHHHHHHhhc
Q 002385 175 AMETIMTLVIDESEDVSWDLLRILLASVRK 204 (929)
Q Consensus 175 ~M~dIMs~VIEESE~VP~eLLDvIL~~Ll~ 204 (929)
++.++|. |++=+..+..++|.+|+..+++
T Consensus 233 Yv~NLLr-l~~Y~PeL~~~Il~LIierlik 261 (649)
T 3tj1_A 233 YTSNLLK-LRGYCSELGFQIWSLLIEKIIS 261 (649)
T ss_dssp HHHHHHH-HHHHCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHhhchHHHHHHHHHHHHHHHH
Confidence 6666665 4455677888888888888763
No 60
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=63.64 E-value=69 Score=33.68 Aligned_cols=98 Identities=13% Similarity=0.164 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHhhHHHHHhhhhhhhccCCCcCeehhhhHHHHHHhhhcCCCCCCC-hhHHH-HH
Q 002385 29 DEVINLLDKVEHLLANVEQAPSRSMRDALLPTMKGLITNDLLRRSDMDVRLSVTSCISEITRITAPDSPYD-DELMK-EF 106 (929)
Q Consensus 29 dELLKRLkkL~~eLs~vDQ~pvdS~~~SL~pl~k~LVs~~LLkHKDkdVRlyVAcCLADILRIyAPDAPYt-DdqLK-DI 106 (929)
++-+.-|..|...+..++....=.....+. .|+. .||.|.+.+||..+|-||..|..- -|.. +.-+. ..
T Consensus 55 e~k~~Al~~L~~lv~~~dna~~~~~~G~l~----~Lv~-~lL~s~~~~vr~~Aa~~Lg~ia~~----n~~~~~~vv~~g~ 125 (296)
T 1xqr_A 55 QEREGALELLADLCENMDNAADFCQLSGMH----LLVG-RYLEAGAAGLRWRAAQLIGTCSQN----VAAIQEQVLGLGA 125 (296)
T ss_dssp HHHHHHHHHHHHHHTSHHHHHHHHHTTHHH----HHHH-TTTTCSSHHHHHHHHHHHHHHHTT----CHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHhChhhHHHHHHcCCHH----HHHH-HHHcCCCHHHHHHHHHHHHHHHhC----CHHHHHHHHHCCC
Confidence 455555555555554443210000012222 3343 578999999999999999999842 1111 11111 34
Q ss_pred HHHHHHHhcccCCCCCcchHHHHHHHHHhhh
Q 002385 107 FQLAVSAFENLSHASGRYYMKALSILDTVAK 137 (929)
Q Consensus 107 FqLfV~qf~~LaD~sSP~F~qy~yLLEtLAe 137 (929)
+..++..|.. +++...-...++.|-+|+.
T Consensus 126 l~~Ll~LL~~--~~~~~v~~~A~~ALsnl~~ 154 (296)
T 1xqr_A 126 LRKLLRLLDR--DACDTVRVKALFAISCLVR 154 (296)
T ss_dssp HHHHHHHHHH--CSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcc--CCCHHHHHHHHHHHHHHHc
Confidence 4455555542 2232334456677777653
No 61
>2lcc_A AT-rich interactive domain-containing protein 4A; chromobarrel domain, RBBP1, transcription; NMR {Homo sapiens}
Probab=61.92 E-value=5.6 Score=34.96 Aligned_cols=38 Identities=16% Similarity=0.260 Sum_probs=30.6
Q ss_pred cccCCeEEEeeCC--CCceEEEEEEEecCCCC--eEEEEcCC
Q 002385 711 QLVGSRIKVWWPM--DETFYKGVVDNYDPIKK--KHRILYAD 748 (929)
Q Consensus 711 ~lVG~RVkV~WP~--D~~wY~G~V~syd~~tk--kH~V~YDD 748 (929)
-.+|.+|.|+|++ +..||.+.|...+...+ +..|.|..
T Consensus 6 ~~vGekV~~~~~d~k~~~~y~AkIl~i~~~~~~~~Y~VHY~g 47 (76)
T 2lcc_A 6 CLTGTKVKVKYGRGKTQKIYEASIKSTEIDDGEVLYLVHYYG 47 (76)
T ss_dssp SSTTCEEEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEETT
T ss_pred cCCCCEEEEEeCCCCCCCEEEEEEEEEEccCCceEEEEEeCC
Confidence 3589999999994 36899999999886544 47888874
No 62
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=60.79 E-value=52 Score=38.94 Aligned_cols=84 Identities=8% Similarity=0.088 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHhhc-CCchhHHHHHHHHHHH---HhcccCCCcHHHHHHHHHHhhccCCCCChhhHHHHHHHHhhchH
Q 002385 151 KLVVEMFQHFLKVIRS-NHPHFVFAAMETIMTL---VIDESEDVSWDLLRILLASVRKENQDVSPTSWKLGEKVFTKCAA 226 (929)
Q Consensus 151 dLI~eLFktFF~iVr~-~hp~kV~~~M~dIMs~---VIEESE~VP~eLLDvIL~~Ll~~~ks~~PaAy~LA~~VI~~Cad 226 (929)
..+..||..|..+... .|| .|......++.. .+.+....=..+|..|+..| . ......|...-.++|..|..
T Consensus 501 ~~l~~l~~~l~~l~~~d~~~-~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~~ 576 (971)
T 2x1g_F 501 RQIPRLMRVLAEIPYEKLNV-KLLGTALETMGSYCNWLMENPAYIPPAINLLVRGL-N--SSMSAQATLGLKELCRDCQL 576 (971)
T ss_dssp CHHHHHHHHHHHSCTTTSCH-HHHHHHHHHHHHTHHHHC----CHHHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHhcCccccCH-HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHHH
Confidence 5667788755444322 244 344444344433 23322233345667777666 2 44555555666689999999
Q ss_pred HHHHHHHHHHHh
Q 002385 227 KLKTNLKEAVQS 238 (929)
Q Consensus 227 KL~p~I~q~fnS 238 (929)
.|.||+.++++.
T Consensus 577 ~l~p~~~~ll~~ 588 (971)
T 2x1g_F 577 QLKPYADPLLNA 588 (971)
T ss_dssp HHHHHHHHHHHH
T ss_pred hccccHHHHHHH
Confidence 999998877764
No 63
>2f5k_A MORF-related gene 15 isoform 1; beta barrel, gene regulation; 2.20A {Homo sapiens} SCOP: b.34.13.3 PDB: 2efi_A
Probab=60.51 E-value=9.8 Score=35.37 Aligned_cols=39 Identities=18% Similarity=0.172 Sum_probs=30.8
Q ss_pred ccccccCCeEEEeeCCCCceEEEEEEEecCCCC--eEEEEcCC
Q 002385 708 LNEQLVGSRIKVWWPMDETFYKGVVDNYDPIKK--KHRILYAD 748 (929)
Q Consensus 708 ~ge~lVG~RVkV~WP~D~~wY~G~V~syd~~tk--kH~V~YDD 748 (929)
...=.+|.+|-+|| +..||.+.|.......+ +..|.|.+
T Consensus 20 ~~~f~vGekVl~~~--~~~~YeAkIl~v~~~~~~~~Y~VHY~G 60 (102)
T 2f5k_A 20 KPKFQEGERVLCFH--GPLLYEAKCVKVAIKDKQVKYFIHYSG 60 (102)
T ss_dssp SCSCCTTCEEEEES--SSSEEEEEEEEEEEETTEEEEEEEETT
T ss_pred CcccCCCCEEEEEE--CCEEEEEEEEEEEEcCCCcEEEEEeCC
Confidence 34445999999999 67999999999775433 68888885
No 64
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=60.36 E-value=66 Score=37.78 Aligned_cols=165 Identities=15% Similarity=0.136 Sum_probs=85.9
Q ss_pred HHHHHHhhhcCCCCCCCh---hHHHHHHHHHHHHhcccCCC-CCc-chHHHHHHHHHhhhhceeeeeccCCchHH-HHHH
Q 002385 83 SCISEITRITAPDSPYDD---ELMKEFFQLAVSAFENLSHA-SGR-YYMKALSILDTVAKVRSCLLMLDLECDKL-VVEM 156 (929)
Q Consensus 83 cCLADILRIyAPDAPYtD---dqLKDIFqLfV~qf~~LaD~-sSP-~F~qy~yLLEtLAeVKS~VLMlDLe~ddL-I~eL 156 (929)
.++..|++.|+-+..|.+ .-|..+|..++..|. .+. +.| .-..+|.+|..+...-.-.++ . ..+ +..+
T Consensus 745 ~l~~~li~~f~~~~~~~~~~~~~l~~~~~~~l~~~~--~~~~~~pd~~~~~f~ll~~~~~~~~~~~~---~-~~~~~~~i 818 (963)
T 2x19_B 745 DLTRQLVHIFAHEPAHFPPIEALFLLVTSVTLTLFQ--QGPRDHPDIVDSFMQLLAQALKRKPDLFL---C-ERLDVKAV 818 (963)
T ss_dssp HHHHHHHHHHTTCTTTCHHHHHHHHHHHHHHHHHHH--HCTTTCHHHHHHHHHHHHHHHHHCGGGGG---C-TTSCHHHH
T ss_pred HHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHh--hCcccCchHHHHHHHHHHHHHHhCcHHHc---C-CcccHHHH
Confidence 346677777766654442 233344444444444 122 234 345678899888865333322 1 233 6667
Q ss_pred HHHHHHHhhcCCchhHHHHHHHHHHHHhcccC----------CCcHHHHHHHHHHhhccCC-CCChhhHHHHHHHHhhch
Q 002385 157 FQHFLKVIRSNHPHFVFAAMETIMTLVIDESE----------DVSWDLLRILLASVRKENQ-DVSPTSWKLGEKVFTKCA 225 (929)
Q Consensus 157 FktFF~iVr~~hp~kV~~~M~dIMs~VIEESE----------~VP~eLLDvIL~~Ll~~~k-s~~PaAy~LA~~VI~~Ca 225 (929)
|..+...++.. ...+......+|..+|.... ..-..++..||..+..... ........+...++..+.
T Consensus 819 ~~~~~~~l~~~-~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~il~~l~~~~~ 897 (963)
T 2x19_B 819 FQCAVLALKFP-EAPTVKASCGFFTELLPRCGEVESVGKVVQEDGRMLLIAVLEAIGGQASRSLMDCFADILFALNKHCF 897 (963)
T ss_dssp HHHHHHHTTCS-CHHHHHHHHHHHHHHGGGTTSSCHHHHHTTTSHHHHHHHHHHHHTTTSCGGGHHHHHHHHHHHHHHSH
T ss_pred HHHHHHHcCCC-CHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhcccCChhHHHHHHHHHHHHHHHCh
Confidence 77777766633 34455555667777775432 2334566677777653222 222222222234556666
Q ss_pred HHHHHHHHHHHHhcCC-----CCchhHHHHHHHh
Q 002385 226 AKLKTNLKEAVQSRGI-----ALDDYAEIVACIC 254 (929)
Q Consensus 226 dKL~p~I~q~fnS~Gi-----~ld~Y~eIV~sI~ 254 (929)
..+..++.++|...++ .-+.-...+..|+
T Consensus 898 ~~~~~~l~~~l~~~~~p~~~~~~~~~~~f~~~l~ 931 (963)
T 2x19_B 898 SLLSMWIKEALQPPGFPSARLSPEQKDTFSQQIL 931 (963)
T ss_dssp HHHHHHHHHHTCSTTSSCTTCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcccCCCCCcCCHHHHHHHHHHHH
Confidence 6666677666631123 2244455555554
No 65
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=59.67 E-value=55 Score=39.96 Aligned_cols=106 Identities=11% Similarity=0.131 Sum_probs=70.3
Q ss_pred HhhHHHHHhhhhhhhccCCCcCeehhhhHHHHHHhhhcCCC-CCCChhHHHHHHHHHHHHhcccCCC-------------
Q 002385 55 DALLPTMKGLITNDLLRRSDMDVRLSVTSCISEITRITAPD-SPYDDELMKEFFQLAVSAFENLSHA------------- 120 (929)
Q Consensus 55 ~SL~pl~k~LVs~~LLkHKDkdVRlyVAcCLADILRIyAPD-APYtDdqLKDIFqLfV~qf~~LaD~------------- 120 (929)
.-|.+++..|++..-|.|++..||..+|..|..+.+-+.+. .||-+. |++.+-..|..=..+
T Consensus 531 ~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~~~~~----il~~l~~lL~~~~~~~~~~~~~~~~~~~ 606 (980)
T 3ibv_A 531 AAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVNYTES----SLAMLGDLLNISVSPVTDMDAPVPTLNS 606 (980)
T ss_dssp TTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSSSHHH----HHHHTTGGGCCCCCCCCC--CSSCCHHH
T ss_pred hhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhhHHHH----HHHHHHHhhcCcCCCCCcccccccchhh
Confidence 45778888999888889999999999999999999999887 566544 443333333210011
Q ss_pred --CCcchHHHHHHHHHhhhhceeeeeccCC-----chHHHHHHHHHHHHHhh
Q 002385 121 --SGRYYMKALSILDTVAKVRSCLLMLDLE-----CDKLVVEMFQHFLKVIR 165 (929)
Q Consensus 121 --sSP~F~qy~yLLEtLAeVKS~VLMlDLe-----~ddLI~eLFktFF~iVr 165 (929)
++..|..++||.|.++.+=+.+-. ..+ .+.|+..+|+.+-..+.
T Consensus 607 ~~~~~~~~~ql~L~eaig~li~~~~~-~~e~~~~~l~~ll~pl~~~l~~~l~ 657 (980)
T 3ibv_A 607 SIRNSDFNSQLYLFETVGVLISSGNL-TPEEQALYCDSLINALIGKANAALS 657 (980)
T ss_dssp HHHTTTHHHHHHHHHHHHHHHHHSCC-CHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hcccCCchHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 112588899999999988544221 111 34566666666655554
No 66
>2ro0_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae}
Probab=59.39 E-value=18 Score=33.02 Aligned_cols=39 Identities=10% Similarity=0.058 Sum_probs=31.1
Q ss_pred cccCCeEEEeeCCCCceEEEEEEEecCCC--CeEEEEcCCCcc
Q 002385 711 QLVGSRIKVWWPMDETFYKGVVDNYDPIK--KKHRILYADGDE 751 (929)
Q Consensus 711 ~lVG~RVkV~WP~D~~wY~G~V~syd~~t--kkH~V~YDDGD~ 751 (929)
=.||.+|.|++ +..||.+.|....... ....|.|.+=..
T Consensus 24 ~~vG~kv~v~~--~~~~y~AkIl~ir~~~~~~~YyVHY~g~Nk 64 (92)
T 2ro0_A 24 IIIKCQCWVQK--NDEERLAEILSINTRKAPPKFYVHYVNYNK 64 (92)
T ss_dssp CCTTCEEEEEE--TTEEEEEEEEEEECSSSSCEEEEEETTSCT
T ss_pred ccCCCEEEEEE--CCEEEEEEEEEEEEcCCCcEEEEEeCCcCc
Confidence 34899999998 8899999999987644 368888875444
No 67
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=57.98 E-value=2e+02 Score=34.22 Aligned_cols=56 Identities=9% Similarity=0.143 Sum_probs=38.9
Q ss_pred CcCeehhhhHHHHHHhhhcCCCCCCChhHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHhhhh
Q 002385 74 DMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKV 138 (929)
Q Consensus 74 DkdVRlyVAcCLADILRIyAPDAPYtDdqLKDIFqLfV~qf~~LaD~sSP~F~qy~yLLEtLAeV 138 (929)
..-||.-++-||..+--.+ ..+.+..||..++..| .|.+-+-.....+-|++|.+.
T Consensus 471 ~p~vr~~a~~~lg~~~~~~------~~~~l~~~l~~l~~~L---~d~~~~V~~~A~~Al~~~~~~ 526 (960)
T 1wa5_C 471 HIILRVDAIKYIYTFRNQL------TKAQLIELMPILATFL---QTDEYVVYTYAAITIEKILTI 526 (960)
T ss_dssp CHHHHHHHHHHHHHTGGGS------CHHHHHHHHHHHHHHT---TCSCHHHHHHHHHHHHHHTTC
T ss_pred CceehHHHHHHHHHHHhhC------CHHHHHHHHHHHHHHh---CCCChhHHHHHHHHHHHHHhc
Confidence 5567766666776554433 3567888888888865 455555677788889888775
No 68
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=57.95 E-value=1.6e+02 Score=31.96 Aligned_cols=30 Identities=20% Similarity=0.345 Sum_probs=22.5
Q ss_pred HHHHhhhhhhhccCCCcCeehhhhHHHHHHhh
Q 002385 59 PTMKGLITNDLLRRSDMDVRLSVTSCISEITR 90 (929)
Q Consensus 59 pl~k~LVs~~LLkHKDkdVRlyVAcCLADILR 90 (929)
.+...|+. ||.+.|.+|+..++.||..|..
T Consensus 244 ~~l~~L~~--lL~~~~~~v~~~a~~aL~~l~~ 273 (528)
T 4b8j_A 244 PALPALAR--LIHSNDEEVLTDACWALSYLSD 273 (528)
T ss_dssp THHHHHHH--HTTCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHH--HHCCCCHHHHHHHHHHHHHHHc
Confidence 33444442 6789999999999999998874
No 69
>2xdp_A Lysine-specific demethylase 4C; oxidoreductase, histone modification; 1.56A {Homo sapiens}
Probab=56.88 E-value=12 Score=35.79 Aligned_cols=41 Identities=20% Similarity=0.394 Sum_probs=33.3
Q ss_pred cccccCCeEEEeeCCCCceEEEEEEEecCCCCeEEEEcCCCcc
Q 002385 709 NEQLVGSRIKVWWPMDETFYKGVVDNYDPIKKKHRILYADGDE 751 (929)
Q Consensus 709 ge~lVG~RVkV~WP~D~~wY~G~V~syd~~tkkH~V~YDDGD~ 751 (929)
|.-..|..|.|-|+ |..-|.|...+.... ...+|.++||..
T Consensus 63 GpP~~G~~V~V~W~-DG~~y~a~f~g~~~~-~~YtV~FeDgs~ 103 (123)
T 2xdp_A 63 GPPAEGEVVQVKWP-DGKLYGAKYFGSNIA-HMYQVEFEDGSQ 103 (123)
T ss_dssp CCCCTTCEEEEECT-TSCEEEEEEEEEEEE-EEEEEECTTSCE
T ss_pred CCCCCCCEEEEEcC-CCCEEeEEEeeeeeE-EEEEEEECCCCe
Confidence 56678999999999 556999999988763 557899999974
No 70
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=56.83 E-value=16 Score=34.79 Aligned_cols=53 Identities=17% Similarity=0.327 Sum_probs=39.3
Q ss_pred cccccCCeEEEeeCCCCceEEEEEEEecCCCCeEEEEcCCCcceeeecCcceEEEee
Q 002385 709 NEQLVGSRIKVWWPMDETFYKGVVDNYDPIKKKHRILYADGDEEILNLKKERWELIK 765 (929)
Q Consensus 709 ge~lVG~RVkV~WP~D~~wY~G~V~syd~~tkkH~V~YDDGD~E~L~L~~Ek~e~l~ 765 (929)
|.-..|..|.|-|++ ..-|.|+..++.. ....+|.++||-. |.+..+.+.-++
T Consensus 62 GpP~~G~~V~V~W~D-G~~y~a~f~g~~~-~~~Y~V~feDgs~--~~~kR~~iyt~~ 114 (118)
T 2qqr_A 62 GPPAEGEVVQVRWTD-GQVYGAKFVASHP-IQMYQVEFEDGSQ--LVVKRDDVYTLD 114 (118)
T ss_dssp CCCCTTCEEEEECTT-SCEEEEEEEEEEE-EEEEEEEETTSCE--EEECGGGEEETT
T ss_pred CCCCCCCEEEEEcCC-CCEeeeEEeceeE-EEEEEEEECCCCE--EEEcHHHeeccc
Confidence 566789999999994 5689999888765 3457888899985 555655555443
No 71
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=56.53 E-value=8.4 Score=36.74 Aligned_cols=41 Identities=15% Similarity=0.177 Sum_probs=33.6
Q ss_pred ccccCCeEEEeeCCCCceEEEEEEEecCCCCeEEEEcCCCcce
Q 002385 710 EQLVGSRIKVWWPMDETFYKGVVDNYDPIKKKHRILYADGDEE 752 (929)
Q Consensus 710 e~lVG~RVkV~WP~D~~wY~G~V~syd~~tkkH~V~YDDGD~E 752 (929)
+--||.+|..-|+ +..||.|+|++-... -.+.|.++||-.-
T Consensus 5 ~v~vGq~V~akh~-ngryy~~~V~~~~~~-~~y~V~F~DgS~s 45 (118)
T 2qqr_A 5 SITAGQKVISKHK-NGRFYQCEVVRLTTE-TFYEVNFDDGSFS 45 (118)
T ss_dssp CCCTTCEEEEECT-TSSEEEEEEEEEEEE-EEEEEEETTSCEE
T ss_pred eeccCCEEEEECC-CCCEEeEEEEEEeeE-EEEEEEcCCCCcc
Confidence 3458999999999 778999999997553 4588999999754
No 72
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=54.64 E-value=15 Score=41.60 Aligned_cols=33 Identities=12% Similarity=0.115 Sum_probs=22.8
Q ss_pred HHHHhhhhhhhccCCCcCeehhhhHHHHHHhhhcC
Q 002385 59 PTMKGLITNDLLRRSDMDVRLSVTSCISEITRITA 93 (929)
Q Consensus 59 pl~k~LVs~~LLkHKDkdVRlyVAcCLADILRIyA 93 (929)
.++..|. .++.+.|.++|.-++-+|..+..-|+
T Consensus 353 ~iv~~L~--~~l~~~d~~~r~~~v~aI~~la~~~~ 385 (591)
T 2vgl_B 353 QVLAELK--EYATEVDVDFVRKAVRAIGRCAIKVE 385 (591)
T ss_dssp HHHHHHH--HHTTSSCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHH--HHHhcCCHHHHHHHHHHHHHHHHhCh
Confidence 3444444 46777888888888888887776653
No 73
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=54.07 E-value=20 Score=40.50 Aligned_cols=116 Identities=14% Similarity=0.195 Sum_probs=59.4
Q ss_pred hccCCCcCeehhhhHHHHHHhhhcCCCCCCChhHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHhhhhceeeeeccCC
Q 002385 69 LLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDLE 148 (929)
Q Consensus 69 LLkHKDkdVRlyVAcCLADILRIyAPDAPYtDdqLKDIFqLfV~qf~~LaD~sSP~F~qy~yLLEtLAeVKS~VLMlDLe 148 (929)
+|+|.|..|+.-++.||..+..-. +-+.+.++.++.-++..|-.|.+ .++ .-++..|.+|..+-... +
T Consensus 247 ~l~~~~~~V~~ea~~~i~~l~~~~----~~~~~~~~~~~~~~~~~L~~L~~-~d~--~vr~~aL~~l~~i~~~~-----p 314 (591)
T 2vgl_B 247 RLSHANSAVVLSAVKVLMKFLELL----PKDSDYYNMLLKKLAPPLVTLLS-GEP--EVQYVALRNINLIVQKR-----P 314 (591)
T ss_dssp CSCSSTTHHHHHHHHHHHHSCCSC----CBTTBSHHHHHHHTHHHHHHHTT-SCH--HHHHHHHHHHHHHHHHC-----C
T ss_pred HHcCCChHHHHHHHHHHHHHhhcc----CCCHHHHHHHHHHHHHHHHHHhc-CCc--cHHHHHHHHHHHHHHhC-----h
Confidence 689999999999999998886422 11224455555444444334443 222 34556677776652210 0
Q ss_pred chHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcccCCCcHHHHHHHHHHh
Q 002385 149 CDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESEDVSWDLLRILLASV 202 (929)
Q Consensus 149 ~ddLI~eLFktFF~iVr~~hp~kV~~~M~dIMs~VIEESE~VP~eLLDvIL~~L 202 (929)
+++....+.|| ...+.+..|...-.++|..+.++.. + ..++..|+..+
T Consensus 315 --~~~~~~~~~~~--~~~~d~~~Ir~~al~~L~~l~~~~n-v-~~iv~~L~~~l 362 (591)
T 2vgl_B 315 --EILKQEIKVFF--VKYNDPIYVKLEKLDIMIRLASQAN-I-AQVLAELKEYA 362 (591)
T ss_dssp --STTTTCTTTTS--CCTTSCHHHHHHHHHHHHHTCCSST-H-HHHHHHHHHHT
T ss_pred --HHHHHHHHhhe--eccCChHHHHHHHHHHHHHHCChhh-H-HHHHHHHHHHH
Confidence 01111112222 1123345566666666666665532 2 34555555444
No 74
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=53.75 E-value=1.2e+02 Score=36.57 Aligned_cols=116 Identities=6% Similarity=0.203 Sum_probs=72.0
Q ss_pred ehhhh-HHHHHHhhhcCCCCCCChhHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHhhhhceeeeeccCCc-------
Q 002385 78 RLSVT-SCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDLEC------- 149 (929)
Q Consensus 78 RlyVA-cCLADILRIyAPDAPYtDdqLKDIFqLfV~qf~~LaD~sSP~F~qy~yLLEtLAeVKS~VLMlDLe~------- 149 (929)
|+.+| .||+-|.|..+-..+|.. .|..|+.+ .++|+. ++++. +..+.|.-++.|=++|.+.|+..
T Consensus 399 rl~~aL~~l~~~~r~lv~~~~yr~-hl~~lL~l---~LpgID-~ND~~--KT~~tl~fi~~i~s~ipi~d~s~~~~~~~~ 471 (799)
T 1vsy_4 399 RIISSLKQFTRVIRFIVMDKLYRV-HITNVLSM---LVSKLD-MNDTN--LTSNLINGIVSIAAFIPIQDLTGEDDYISF 471 (799)
T ss_dssp HHHHHHHHHHTTHHHHTTSTTGGG-HHHHHHHH---HHHTCC-SSCHH--HHHHHHHHHHHHHHTSCBCCCCCCCTTCCH
T ss_pred HHHHHHHHHHHHHHHHhcCcccHH-HHHHHHHH---HhccCC-cccHH--HHHHHHHHHHHHHHhccccccCCcchhhhh
Confidence 44443 479999999998888864 44444444 444543 44443 66677777777777777776641
Q ss_pred ------------------------------------------hHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhccc
Q 002385 150 ------------------------------------------DKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDES 187 (929)
Q Consensus 150 ------------------------------------------ddLI~eLFktFF~iVr~~hp~kV~~~M~dIMs~VIEES 187 (929)
.+++.++|.-+|..+....-..|...+...+..++.
T Consensus 472 ~~~~~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~sT~~f~~~v~~f~drvf~llen~~Ee~l~~~l~~~~~~l~~-- 549 (799)
T 1vsy_4 472 ESDTLPLVQQHFYHIKCGESSKTFRVDDELLNNAFKASTTVFQSMLKVYVEKIFQLVDVDLEDSLVTKINQTTMILQE-- 549 (799)
T ss_dssp HHHTHHHHHHHHHHHHTTCCSSSCCCCTTHHHHHHHHHTSTHHHHHHHHHHHHHHHTTSCCCTHHHHHHHHHHHHHHH--
T ss_pred hhhhhhhhhhhhhhhccccccccccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH--
Confidence 167777888888877765555565554444444443
Q ss_pred CCCcHHHHHHHHHHhh
Q 002385 188 EDVSWDLLRILLASVR 203 (929)
Q Consensus 188 E~VP~eLLDvIL~~Ll 203 (929)
.++.++.+.+|..|.
T Consensus 550 -~lS~~if~~~l~k~~ 564 (799)
T 1vsy_4 550 -SMDDKIFNYFASLLN 564 (799)
T ss_dssp -TBCHHHHHHHHHHHH
T ss_pred -hCCHHHHHHHHHHHH
Confidence 466666666665543
No 75
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=53.49 E-value=1.5e+02 Score=34.81 Aligned_cols=137 Identities=9% Similarity=0.103 Sum_probs=62.2
Q ss_pred hhhHHHHHHhhhcCCCCC----------------CCh---hHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHhhhhce
Q 002385 80 SVTSCISEITRITAPDSP----------------YDD---ELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRS 140 (929)
Q Consensus 80 yVAcCLADILRIyAPDAP----------------YtD---dqLKDIFqLfV~qf~~LaD~sSP~F~qy~yLLEtLAeVKS 140 (929)
.+--||+-|+|.+.+..| +.. ..+..++.+|...|.... .+..-+...+.+|..++.+
T Consensus 639 ~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~v~e~~~~~l~~~~~~-- 715 (963)
T 2x19_B 639 HILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVLSKWL-NDAQVVEAVCAIFEKSVKT-- 715 (963)
T ss_dssp HHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHHHHHHHHHHHHhcc-CchHHHHHHHHHHHHHHHh--
Confidence 445688899999875433 111 244455555554444322 1122344445555555421
Q ss_pred eeeeccCCchHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcc--cC-CCcH---HHHHHHHHHhh----c---cCC
Q 002385 141 CLLMLDLECDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDE--SE-DVSW---DLLRILLASVR----K---ENQ 207 (929)
Q Consensus 141 ~VLMlDLe~ddLI~eLFktFF~iVr~~hp~kV~~~M~dIMs~VIEE--SE-~VP~---eLLDvIL~~Ll----~---~~k 207 (929)
+.-....++..++..++.......- .....++..+|.+ .+ .+.. .++..++..++ . ..+
T Consensus 716 ----~~~~~~~~l~~~~~~l~~~~~~~~~----~~~l~l~~~li~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~p 787 (963)
T 2x19_B 716 ----LLDDFAPMVPQLCEMLGRMYSTIPQ----ASALDLTRQLVHIFAHEPAHFPPIEALFLLVTSVTLTLFQQGPRDHP 787 (963)
T ss_dssp ----SSSTTGGGHHHHHHHHHHHHHHSCC----HHHHHHHHHHHHHHTTCTTTCHHHHHHHHHHHHHHHHHHHHCTTTCH
T ss_pred ----hcccccccHHHHHHHHHHHHHcCCc----cHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhhCcccCc
Confidence 1111234455555554443333111 2233445555552 11 1221 23333333321 1 122
Q ss_pred CCChhhHHHHHHHHhhchHH
Q 002385 208 DVSPTSWKLGEKVFTKCAAK 227 (929)
Q Consensus 208 s~~PaAy~LA~~VI~~CadK 227 (929)
...-..|.|...++..|...
T Consensus 788 d~~~~~f~ll~~~~~~~~~~ 807 (963)
T 2x19_B 788 DIVDSFMQLLAQALKRKPDL 807 (963)
T ss_dssp HHHHHHHHHHHHHHHHCGGG
T ss_pred hHHHHHHHHHHHHHHhCcHH
Confidence 33445677888888887765
No 76
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=53.08 E-value=1e+02 Score=35.72 Aligned_cols=178 Identities=17% Similarity=0.210 Sum_probs=106.6
Q ss_pred hHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHhcccCCchhhHHhhHHHHHhhhh-hhhccCCCcCeehhhhHH
Q 002385 6 REIELEEQLKDAGNLLLNPPSPVDEVINLLDKVEHLLANVEQAPSRSMRDALLPTMKGLIT-NDLLRRSDMDVRLSVTSC 84 (929)
Q Consensus 6 ~~~ele~~l~~~G~kLisppiS~dELLKRLkkL~~eLs~vDQ~pvdS~~~SL~pl~k~LVs-~~LLkHKDkdVRlyVAcC 84 (929)
-.+|.|.-+.+.-.+++ -..+.+|.. +|..+-..|.-.+. +.. +..|-.++...+. ..-+...|.+.=--...|
T Consensus 170 l~~E~E~~i~~~ikK~L-~DVT~~EF~-L~m~lL~~lkl~~t-~~g--~qeLv~ii~eQa~L~~~f~~sD~e~vdRlI~C 244 (507)
T 3u0r_A 170 LTKEVEELILTESKKVL-EDVTGEEFV-LFMKILSGLKSLQT-VSG--RQQLVELVAEQADLEQTFNPSDPDCVDRLLQC 244 (507)
T ss_dssp SCHHHHHHHHHHHHHHT-TSCCHHHHH-HHHHHHHTSGGGSS-HHH--HHHHHHHHHHHHTTTSCCCSSCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHh-ccccHHHHH-HHHHHHHhcccccC-chH--HHHHHHHHHHHHhccCCCCCcCHHHHHHHHHH
Confidence 34778888888888888 566666653 33344444444433 221 3344444433321 123454565554556677
Q ss_pred HHHHhhhcCCCCCCChhHHHHHHHHHHHH-hcccCCCCCc--chHHHHHHHHHhhhhceeeeeccCC-chHHHHHHHHHH
Q 002385 85 ISEITRITAPDSPYDDELMKEFFQLAVSA-FENLSHASGR--YYMKALSILDTVAKVRSCLLMLDLE-CDKLVVEMFQHF 160 (929)
Q Consensus 85 LADILRIyAPDAPYtDdqLKDIFqLfV~q-f~~LaD~sSP--~F~qy~yLLEtLAeVKS~VLMlDLe-~ddLI~eLFktF 160 (929)
+-..|=+|++-+. -..+|.+|..+ |+.|.+...+ --...+.||..||++-++. -+++ +.+++..+|++|
T Consensus 245 ~~~ALP~FS~~v~-----StkFv~y~~~kIlP~l~~L~e~~~~~~~kL~LLK~lAE~s~~~--~~~e~a~~~l~~iy~~L 317 (507)
T 3u0r_A 245 TRQAVPLFSKNVH-----STRFVTYFCEQVLPNLGTLTTPVEGLDIQLEVLKLLAEMSSFC--GDMEKLETNLRKLFDKL 317 (507)
T ss_dssp HHHHGGGCBTTBC-----CHHHHHHHHHHTGGGTTCCCCC--CCCHHHHHHHHHHHHHTTC--CCCTTHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCC-----hHHHHHHHHHhhccchhhccccccchHHHHHHHHHHHHHccCC--CccchHHHHHHHHHHHH
Confidence 7788888887776 34588888887 7777775443 2236789999999997663 3455 678999999999
Q ss_pred HHHhhcCCchhHH--HHHHHHHHHHhcccCCCcHHHHHHHHHHhh
Q 002385 161 LKVIRSNHPHFVF--AAMETIMTLVIDESEDVSWDLLRILLASVR 203 (929)
Q Consensus 161 F~iVr~~hp~kV~--~~M~dIMs~VIEESE~VP~eLLDvIL~~Ll 203 (929)
+..+- --|..+. .-|. ++...+....+.|||..|-
T Consensus 318 ~~ymP-~~p~~~~~~~~~~-------~~~p~l~fS~vECLLy~fH 354 (507)
T 3u0r_A 318 LEYMP-LPPEEAENGENAG-------NEEPKLQFSYVECLLYSFH 354 (507)
T ss_dssp HTTSC-CCC---------------------CCCHHHHHHHHHHHH
T ss_pred HHHCC-CCccccccccccc-------ccCcccchhHHHHHHHHHH
Confidence 98655 2332221 1111 3455688888888887653
No 77
>2lcd_A AT-rich interactive domain-containing protein 4A; tudor domain, RBBP1, transcription; NMR {Homo sapiens}
Probab=56.62 E-value=3.2 Score=39.60 Aligned_cols=49 Identities=18% Similarity=0.315 Sum_probs=39.5
Q ss_pred CcccccccCCeEEEeeCCCCceEEEEEEEecCCCCeEEEEcCCCcceeeec
Q 002385 706 PALNEQLVGSRIKVWWPMDETFYKGVVDNYDPIKKKHRILYADGDEEILNL 756 (929)
Q Consensus 706 ~~~ge~lVG~RVkV~WP~D~~wY~G~V~syd~~tkkH~V~YDDGD~E~L~L 756 (929)
...|.-.||..|.+--| |..|-+|+|...-.. -.++|++||||+..|..
T Consensus 52 ~ikG~l~vG~~ve~~~~-~~~~~~~~I~~i~D~-S~YtVVFdDGD~ktLrR 100 (118)
T 2lcd_A 52 QVKGPLRVGAIVETRTS-DGSFQEAIISKLTDA-SWYTVVFDDGDERTLRR 100 (118)
Confidence 34677779999999998 568999999987664 45779999999987653
No 78
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=49.54 E-value=1e+02 Score=30.90 Aligned_cols=101 Identities=14% Similarity=0.165 Sum_probs=63.5
Q ss_pred CCCCCh---hHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHhhhhceeeeeccCCchHHHHHHHHHHHHHhhcCCchh
Q 002385 95 DSPYDD---ELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDLECDKLVVEMFQHFLKVIRSNHPHF 171 (929)
Q Consensus 95 DAPYtD---dqLKDIFqLfV~qf~~LaD~sSP~F~qy~yLLEtLAeVKS~VLMlDLe~ddLI~eLFktFF~iVr~~hp~k 171 (929)
-.|++| +.++++|.-.|.+++-= ...++.+|.||+=..|...-+ -|++ --+++|+.+.++ ...+ .+
T Consensus 27 g~p~~d~~l~rlrd~YerAia~~Pp~---k~~~wrrYI~LWIrYA~~~ei---~D~d---~aR~vy~~a~~~-hKkF-AK 95 (161)
T 4h7y_A 27 SVPLSDALLNKLIGRYSQAIEALPPD---KYGQNESFARIQVRFAELKAI---QEPD---DARDYFQMARAN-CKKF-AF 95 (161)
T ss_dssp TCSCCHHHHHHHHHHHHHHHHHSCGG---GGTTCHHHHHHHHHHHHHHHH---HCGG---GCHHHHHHHHHH-CTTB-HH
T ss_pred CCCchhhHHHHHHHHHHHHHHcCCcc---ccccHHHHHHHHHHHHHHHHh---cCHH---HHHHHHHHHHHH-hHHH-HH
Confidence 457777 56777888777766532 377899999999999988433 6665 235666666554 3333 22
Q ss_pred HH-------------HHHHHHHHHHhcccCCCcHHHHHHHHHHhhccCC
Q 002385 172 VF-------------AAMETIMTLVIDESEDVSWDLLRILLASVRKENQ 207 (929)
Q Consensus 172 V~-------------~~M~dIMs~VIEESE~VP~eLLDvIL~~Ll~~~k 207 (929)
|. ..-..||..-|.- -..|.++|...|.+|....+
T Consensus 96 iwi~~AqFEiRqgnl~kARkILg~AiG~-~~k~~~~le~a~~nl~~~~~ 143 (161)
T 4h7y_A 96 VHISFAQFELSQGNVKKSKQLLQKAVER-GAVPLEMLEIALRNLNLQKK 143 (161)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCBCHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHhcc-CCCcHHHHHHHHHhhhcCCC
Confidence 21 1223566666663 36677888888877765443
No 79
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=49.48 E-value=1.4e+02 Score=28.04 Aligned_cols=127 Identities=11% Similarity=0.145 Sum_probs=66.4
Q ss_pred hccCCCcCeehhhhHHHHHHhhhcCCCCCCChhHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHhhhhceeeeeccCC
Q 002385 69 LLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDLE 148 (929)
Q Consensus 69 LLkHKDkdVRlyVAcCLADILRIyAPDAPYtDdqLKDIFqLfV~qf~~LaD~sSP~F~qy~yLLEtLAeVKS~VLMlDLe 148 (929)
+|.+.|..||..++.+|..+-. . +++..++..| .| +...-+...+..|+.+..
T Consensus 58 ~l~~~~~~vr~~a~~aL~~~~~---------~----~~~~~L~~~l---~~---~~~~vr~~a~~aL~~~~~-------- 110 (211)
T 3ltm_A 58 ALKDEDAWVRRAAADALGQIGD---------E----RAVEPLIKAL---KD---EDGWVRQSAAVALGQIGD-------- 110 (211)
T ss_dssp HTTCSCHHHHHHHHHHHHHHCC---------G----GGHHHHHHHT---TC---SSHHHHHHHHHHHHHHCC--------
T ss_pred HHcCCCHHHHHHHHHHHHhhCC---------H----HHHHHHHHHH---cC---CCHHHHHHHHHHHHHhCc--------
Confidence 6678899999999999988731 1 2334444443 33 334456677777776642
Q ss_pred chHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcccCCCcHHHHHHHHHHhhccCCCCChhhHHHHHH-HHhhchHH
Q 002385 149 CDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESEDVSWDLLRILLASVRKENQDVSPTSWKLGEK-VFTKCAAK 227 (929)
Q Consensus 149 ~ddLI~eLFktFF~iVr~~hp~kV~~~M~dIMs~VIEESE~VP~eLLDvIL~~Ll~~~ks~~PaAy~LA~~-VI~~CadK 227 (929)
...+ ..+...+.+ -...|.......|..+=+ .+.+..|+..+.. ..+.-+.-|.. +..-....
T Consensus 111 -~~~~----~~L~~~l~d-~~~~vr~~a~~aL~~~~~------~~~~~~L~~~l~d----~~~~vr~~a~~aL~~~~~~~ 174 (211)
T 3ltm_A 111 -ERAV----EPLIKALKD-EDWFVRIAAAFALGEIGD------ERAVEPLIKALKD----EDGWVRQSAADALGEIGGER 174 (211)
T ss_dssp -GGGH----HHHHHHTTC-SSHHHHHHHHHHHHHHCC------GGGHHHHHHHTTC----SSHHHHHHHHHHHHHHCSHH
T ss_pred -HHHH----HHHHHHHhC-CCHHHHHHHHHHHHHcCC------HHHHHHHHHHHcC----CCHHHHHHHHHHHHHhCchh
Confidence 1122 222233332 234566555555555421 2455555554422 22333333322 33333445
Q ss_pred HHHHHHHHHHh
Q 002385 228 LKTNLKEAVQS 238 (929)
Q Consensus 228 L~p~I~q~fnS 238 (929)
..+.|.+++++
T Consensus 175 ~~~~L~~~l~d 185 (211)
T 3ltm_A 175 VRAAMEKLAET 185 (211)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhC
Confidence 66777777764
No 80
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=49.26 E-value=85 Score=34.26 Aligned_cols=22 Identities=18% Similarity=0.241 Sum_probs=19.2
Q ss_pred hccCCCcCeehhhhHHHHHHhh
Q 002385 69 LLRRSDMDVRLSVTSCISEITR 90 (929)
Q Consensus 69 LLkHKDkdVRlyVAcCLADILR 90 (929)
||.|.+..||..++.||..|..
T Consensus 307 lL~~~~~~v~~~a~~~L~~l~~ 328 (530)
T 1wa5_B 307 LLSHESTLVQTPALRAVGNIVT 328 (530)
T ss_dssp GGGCSCHHHHHHHHHHHHHHTT
T ss_pred HHCCCChhhHHHHHHHHHHHHc
Confidence 6788999999999999998874
No 81
>2bud_A Males-absent on the first protein; transferase, MOF, HAT, acetyl-transfer, dosage compensation complex, DCC, royal family; NMR {Drosophila melanogaster} SCOP: b.34.13.3
Probab=45.77 E-value=44 Score=30.73 Aligned_cols=48 Identities=10% Similarity=0.024 Sum_probs=35.4
Q ss_pred CCeEEEeeCCCCceEEEEEEEecCCC-----CeEEEEcCCCcceeeecCcceEEEeeCCCC
Q 002385 714 GSRIKVWWPMDETFYKGVVDNYDPIK-----KKHRILYADGDEEILNLKKERWELIKGGSS 769 (929)
Q Consensus 714 G~RVkV~WP~D~~wY~G~V~syd~~t-----kkH~V~YDDGD~E~L~L~~Ek~e~l~~~s~ 769 (929)
|.+|-|+|+ |..||.++|..-.... .+..|.|..-...| =+||..+..
T Consensus 18 ~e~vlc~~~-dg~~yeAeIl~ir~~~~~~~~~~YYVHY~g~NkRl-------DEWV~~~RL 70 (92)
T 2bud_A 18 DKIYFIRRE-DGTVHRGQVLQSRTTENAAAPDEYYVHYVGLNRRL-------DGWVGRHRI 70 (92)
T ss_dssp TSCEEEECT-TSCEEEEEEEEEECTTTCSSCCEEEEECSSSCTTT-------CEEEETTTE
T ss_pred CCEEEEEeC-CCCEEEEEEEEEeeccCCCCCcEEEEEeCCccccc-------ccccCHHHh
Confidence 889999997 7789999999876543 37889998655422 256666555
No 82
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=45.14 E-value=83 Score=36.21 Aligned_cols=115 Identities=11% Similarity=0.102 Sum_probs=67.0
Q ss_pred hccCCCc--CeehhhhHHHHHHhhhcCCCCCCChhHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHhhhhceeeeecc
Q 002385 69 LLRRSDM--DVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLD 146 (929)
Q Consensus 69 LLkHKDk--dVRlyVAcCLADILRIyAPDAPYtDdqLKDIFqLfV~qf~~LaD~sSP~F~qy~yLLEtLAeVKS~VLMlD 146 (929)
.|.|.+. .|-.-++.||..+- | ..+.+..++..+..-+ . ++...-+|..|.+|..+-...
T Consensus 299 ~l~~~n~~~aVl~ea~~~i~~l~----~----~~~~~~~~~~~L~~~L---~---~~~~niry~aL~~l~~l~~~~---- 360 (621)
T 2vgl_A 299 KVQHSNAKNAVLFEAISLIIHHD----S----EPNLLVRACNQLGQFL---Q---HRETNLRYLALESMCTLASSE---- 360 (621)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHC----C----CHHHHHHHHHHHHHHS---S---CSCHHHHHHHHHHHHHHTTCT----
T ss_pred cccccchHHHHHHHHHHHHHhcC----C----cHHHHHHHHHHHHHHh---c---CCCcchHHHHHHHHHHHHhcc----
Confidence 5677766 66666666666652 2 2233444444433332 2 222234556777777663211
Q ss_pred CCchHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcccCCCcHHHHHHHHHHhhc
Q 002385 147 LECDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESEDVSWDLLRILLASVRK 204 (929)
Q Consensus 147 Le~ddLI~eLFktFF~iVr~~hp~kV~~~M~dIMs~VIEESE~VP~eLLDvIL~~Ll~ 204 (929)
+..+++...+..||..++.+.+..|...-.+||..++.+.. =..|+..|+.++..
T Consensus 361 -~~~~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~~N--v~~Iv~eL~~yl~~ 415 (621)
T 2vgl_A 361 -FSHEAVKTHIETVINALKTERDVSVRQRAVDLLYAMCDRSN--AQQIVAEMLSYLET 415 (621)
T ss_dssp -TTHHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCHHH--HHHHHHHHHHHHHH
T ss_pred -CcHHHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHcChhh--HHHHHHHHHHHHHh
Confidence 12356777778888877745556788888899999988742 24566666666653
No 83
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=44.52 E-value=2.4e+02 Score=27.71 Aligned_cols=21 Identities=19% Similarity=0.131 Sum_probs=17.0
Q ss_pred hccCCCcCeehhhhHHHHHHh
Q 002385 69 LLRRSDMDVRLSVTSCISEIT 89 (929)
Q Consensus 69 LLkHKDkdVRlyVAcCLADIL 89 (929)
+|.+.|..||..++-||..+-
T Consensus 31 ~L~~~~~~vr~~A~~~L~~~~ 51 (280)
T 1oyz_A 31 LLDDHNSLKRISSARVLQLRG 51 (280)
T ss_dssp HTTCSSHHHHHHHHHHHHHHC
T ss_pred HHHcCCHHHHHHHHHHHHccC
Confidence 567888899988888888764
No 84
>2xdp_A Lysine-specific demethylase 4C; oxidoreductase, histone modification; 1.56A {Homo sapiens}
Probab=43.17 E-value=6.7 Score=37.63 Aligned_cols=41 Identities=15% Similarity=0.209 Sum_probs=33.9
Q ss_pred ccccCCeEEEeeCCCCceEEEEEEEecCCCCeEEEEcCCCcce
Q 002385 710 EQLVGSRIKVWWPMDETFYKGVVDNYDPIKKKHRILYADGDEE 752 (929)
Q Consensus 710 e~lVG~RVkV~WP~D~~wY~G~V~syd~~tkkH~V~YDDGD~E 752 (929)
+--||.+|..-|+ +..||.|.|++-.. .-.+.|.|+||-.-
T Consensus 6 ~v~vGq~V~ak~~-ngryy~~~V~~~~~-~~~y~V~F~DgS~s 46 (123)
T 2xdp_A 6 VISVGQTVITKHR-NTRYYSCRVMAVTS-QTFYEVMFDDGSFS 46 (123)
T ss_dssp CCCTTCCCCCCCC-CCCCCCCEEEEEEE-EEEEEEEETTSCEE
T ss_pred ccccCCEEEEECC-CCcEEeEEEEEEee-EEEEEEEcCCCCcc
Confidence 4458999999999 58999999999886 45689999999764
No 85
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=42.25 E-value=1.4e+02 Score=30.25 Aligned_cols=143 Identities=10% Similarity=0.108 Sum_probs=79.9
Q ss_pred hccCCCcCeehhhhHHHHH-HhhhcCCCCCCChhHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHhhhhceeeee-cc
Q 002385 69 LLRRSDMDVRLSVTSCISE-ITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLM-LD 146 (929)
Q Consensus 69 LLkHKDkdVRlyVAcCLAD-ILRIyAPDAPYtDdqLKDIFqLfV~qf~~LaD~sSP~F~qy~yLLEtLAeVKS~VLM-lD 146 (929)
.|.+++-.-|.-+..+|.. ++.= .|+....+....+++..+...+. .|.+-..-...+..|..||+.- - -.
T Consensus 24 ~l~s~~w~eRk~al~~L~~~~~~~-~~~i~~~~~~~~~~~~~L~~~l~--~D~n~~v~~~A~~al~~la~~l----~~~~ 96 (249)
T 2qk1_A 24 RITSSKWKDRVEALEEFWDSVLSQ-TKKLKSTSQNYSNLLGIYGHIIQ--KDANIQAVALAAQSVELICDKL----KTPG 96 (249)
T ss_dssp HHTCSSHHHHHHHHHHHHHHTGGG-CCCBCCTTCCCHHHHHHHHHHHH--HCSCHHHHHHHHHHHHHHHHHH----CTTT
T ss_pred HhhcCCHHHHHHHHHHHHHHHHhc-CCccccCcccHHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHHHHhc----cccc
Confidence 4567777788888888888 8742 34332212222355655555542 2443333345566666666321 1 11
Q ss_pred CCch-HHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcccC-----CCcHHHHHHHHHHhhccCCCCChhhHHHHHHH
Q 002385 147 LECD-KLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESE-----DVSWDLLRILLASVRKENQDVSPTSWKLGEKV 220 (929)
Q Consensus 147 Le~d-dLI~eLFktFF~iVr~~hp~kV~~~M~dIMs~VIEESE-----~VP~eLLDvIL~~Ll~~~ks~~PaAy~LA~~V 220 (929)
+ . .....++-.+|+...+.. ..|...+..-|..+++..+ .-...+++.|+..|... +|..+.-+-..
T Consensus 97 f--~~~y~~~llp~ll~~l~dkk-~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k----~~~vk~~al~~ 169 (249)
T 2qk1_A 97 F--SKDYVSLVFTPLLDRTKEKK-PSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHK----TPQIRMECTQL 169 (249)
T ss_dssp S--CHHHHHHHHHHHHHGGGCCC-HHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCS----SHHHHHHHHHH
T ss_pred c--cHHHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCC----ChHHHHHHHHH
Confidence 2 2 455566677777766554 4566666666666666553 11457888888776432 45555555555
Q ss_pred Hhhch
Q 002385 221 FTKCA 225 (929)
Q Consensus 221 I~~Ca 225 (929)
|..|.
T Consensus 170 l~~~~ 174 (249)
T 2qk1_A 170 FNASM 174 (249)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55555
No 86
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=41.98 E-value=31 Score=36.26 Aligned_cols=47 Identities=21% Similarity=0.296 Sum_probs=35.8
Q ss_pred HHhhHHHHHhhhhhhhccCCCcCeehhhhHHHHHHhhhcCCCCCCCh
Q 002385 54 RDALLPTMKGLITNDLLRRSDMDVRLSVTSCISEITRITAPDSPYDD 100 (929)
Q Consensus 54 ~~SL~pl~k~LVs~~LLkHKDkdVRlyVAcCLADILRIyAPDAPYtD 100 (929)
-.....++.+|+-..|=.|....=.+++++||+=|..=--+|+-|+.
T Consensus 35 Frq~rdi~eall~~~l~~~~~~~k~iri~QfLsRI~eG~~LD~~Fd~ 81 (235)
T 3bu8_A 35 FRQIRDIMQALLVRPLGKEHTVSRLLRVMQCLSRIEEGENLDCSFDM 81 (235)
T ss_dssp HHHHHHHHHHHTTSCCCCCHHHHHHHHHHHHHHHHHTTTCTTEECSS
T ss_pred HHHHHHHHHHHHhCcccccccchhHHHHHHHHHHHHcCCCCCcccCC
Confidence 44567888888877777776666788999998777776677777774
No 87
>3s6n_F Small nuclear ribonucleoprotein F; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_F 2y9c_F 2y9d_F 3cw1_F 3pgw_F* 2y9a_F
Probab=41.68 E-value=63 Score=28.56 Aligned_cols=60 Identities=20% Similarity=0.158 Sum_probs=43.0
Q ss_pred cccccCCeEEEeeCCCCceEEEEEEEecCCCC---eEEEEcCCCcc----eeeecCcceEEEeeCCCC
Q 002385 709 NEQLVGSRIKVWWPMDETFYKGVVDNYDPIKK---KHRILYADGDE----EILNLKKERWELIKGGSS 769 (929)
Q Consensus 709 ge~lVG~RVkV~WP~D~~wY~G~V~syd~~tk---kH~V~YDDGD~----E~L~L~~Ek~e~l~~~s~ 769 (929)
=..++|++|.|+-- +.+.|.|++.+||.--. ...+.|.+|.. ..+-+.-..+.++.....
T Consensus 11 L~~~~~k~V~V~Lk-~g~~~~G~L~~~D~~mNlvL~d~~e~~~g~~~~~lg~v~IRG~nI~~i~~~d~ 77 (86)
T 3s6n_F 11 LNGLTGKPVMVKLK-WGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNNVLYIRGVEE 77 (86)
T ss_dssp HHHHTTSEEEEEET-TSCEEEEEEEEECTTCCEEEEEEEEEETTEEEEEESSEEECGGGEEEEEECC-
T ss_pred HHHhCCCeEEEEEc-CCeEEEEEEEEEcCceEEEEeeEEEEcCCceeeEccEEEEeCCeEEEEEeCCc
Confidence 35679999999776 46899999999998665 34556667753 245566778888876543
No 88
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=38.90 E-value=4.3e+02 Score=29.06 Aligned_cols=99 Identities=16% Similarity=0.223 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHHHhcccCCchhhHHhhHHHHHhhhhhhhcc-CCCcCeehhhhHHHHHHhhhcCCCCCCChhHHHHH
Q 002385 28 VDEVINLLDKVEHLLANVEQAPSRSMRDALLPTMKGLITNDLLR-RSDMDVRLSVTSCISEITRITAPDSPYDDELMKEF 106 (929)
Q Consensus 28 ~dELLKRLkkL~~eLs~vDQ~pvdS~~~SL~pl~k~LVs~~LLk-HKDkdVRlyVAcCLADILRIyAPDAPYtDdqLKDI 106 (929)
.+.++.-++.+...|+.-...+.+.+.++ .+.-.||. ||. +.+..++..+|.||..|..- ++++.+.|
T Consensus 90 ~~~q~~a~~~~rklLs~~~~~~i~~ii~~--G~ip~Lv~--lL~~~~~~~~q~~Aa~aL~nia~~-------~~~~~~~v 158 (529)
T 3tpo_A 90 LESQLQATQAARKLLSREKQPPIDNIIRA--GLIPKFVS--FLGKTDCSPIQFESAWALTNIASG-------TSEQTKAV 158 (529)
T ss_dssp HHHHHHHHHHHHHHHTSSSCCCHHHHHHT--THHHHHHH--HHTCTTCHHHHHHHHHHHHHHHTS-------CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCchHHHHHHC--CCHHHHHH--HHcCCCCHHHHHHHHHHHHHHHcC-------CHHHHHHH
Confidence 44555666666666665444344432221 23333443 554 45588999999999999743 34455544
Q ss_pred HHH-HHHHh-cccCCCCCcchHHHHHHHHHhhh
Q 002385 107 FQL-AVSAF-ENLSHASGRYYMKALSILDTVAK 137 (929)
Q Consensus 107 FqL-fV~qf-~~LaD~sSP~F~qy~yLLEtLAe 137 (929)
+.. .|..| ..|.+++...-.+.+..|.+||.
T Consensus 159 v~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~ 191 (529)
T 3tpo_A 159 VDGGAIPAFISLLASPHAHISEQAVWALGNIAG 191 (529)
T ss_dssp HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhc
Confidence 432 22222 23444444455566777777764
No 89
>3tj1_A RNA polymerase I-specific transcription initiatio RRN3; heat repeat, transcription factor, nucleus; 2.85A {Saccharomyces cerevisiae}
Probab=38.18 E-value=97 Score=36.85 Aligned_cols=108 Identities=10% Similarity=0.055 Sum_probs=70.3
Q ss_pred hhHHHHHHhhhcCCCCCCCh-----hHHHHHHHHHHHHhcccC-CCCCcchHHHHHHHHHhhhhceeeeeccCC-chHHH
Q 002385 81 VTSCISEITRITAPDSPYDD-----ELMKEFFQLAVSAFENLS-HASGRYYMKALSILDTVAKVRSCLLMLDLE-CDKLV 153 (929)
Q Consensus 81 VAcCLADILRIyAPDAPYtD-----dqLKDIFqLfV~qf~~La-D~sSP~F~qy~yLLEtLAeVKS~VLMlDLe-~ddLI 153 (929)
+=+||.-+|..+.+- |+. .+...+|+.++..|...= .+-...|.|++. =.++.. +.+ |+.++
T Consensus 354 LD~im~llf~~~~~~--~~~~~l~~~~~~~lf~~Ll~~F~~~ILpT~~sr~vQFl~--Fy~cs~-------~~~~~~~Fl 422 (649)
T 3tj1_A 354 LDSILTLVSTHVEEQ--VTPESLESGEGVGVFNTLTTLFKTHVLPTYYTRSIQYIM--FHVSQQ-------QLELMDSFL 422 (649)
T ss_dssp HHHHHHHHHHHHHHH--SCHHHHHSSTHHHHHHHHHHHHHHTTTTSCSCSSTTHHH--HHHHTT-------SHHHHHHHH
T ss_pred HHHHHHHHHHHHhhh--cCCCccccchHHHHHHHHHHHHHHhccccccCccHHHHH--HHHHhC-------CHHHHHHHH
Confidence 456777777777643 443 345679999999998543 244445666522 222222 222 56666
Q ss_pred HHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcccCCCcHHHHHHHHHHh
Q 002385 154 VEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESEDVSWDLLRILLASV 202 (929)
Q Consensus 154 ~eLFktFF~iVr~~hp~kV~~~M~dIMs~VIEESE~VP~eLLDvIL~~L 202 (929)
..|++.+| .++.|..++..-..-|...|--+-.||.+++..+|..|
T Consensus 423 ~~L~~~~~---~~~~~~~~RqaAaaYLaSflARAk~v~~~~v~~vl~~L 468 (649)
T 3tj1_A 423 VTLIDISF---AVNEAAEKKIKSLQYLGSYIARAKKLSRTQIIFVASYL 468 (649)
T ss_dssp HHHHHHHH---CSSSCHHHHHHHHHHHHHHHHHBTTCCHHHHHHHHHHH
T ss_pred HHHHHHHh---CCCCcHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 66666666 45667778888888888888888888888777666655
No 90
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=37.90 E-value=62 Score=35.34 Aligned_cols=124 Identities=7% Similarity=0.071 Sum_probs=62.8
Q ss_pred hccCCCcCeehhhhHHHHHHhhhcCCCCCCChhHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHhhhhceeeeeccCC
Q 002385 69 LLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDLE 148 (929)
Q Consensus 69 LLkHKDkdVRlyVAcCLADILRIyAPDAPYtDdqLKDIFqLfV~qf~~LaD~sSP~F~qy~yLLEtLAeVKS~VLMlDLe 148 (929)
||.+.+..|+..++.||+.|.+-..|..+ ......++..++..|. +.+...-......|.+|+....-.
T Consensus 223 ll~~~~~~v~~~a~~~L~~L~~~~~~~~~--~~~~~~~l~~L~~lL~---~~d~~v~~~a~~~L~~L~~~~~~~------ 291 (530)
T 1wa5_B 223 LFNSNKPSLIRTATWTLSNLCRGKKPQPD--WSVVSQALPTLAKLIY---SMDTETLVDACWAISYLSDGPQEA------ 291 (530)
T ss_dssp GGGSCCHHHHHHHHHHHHHHHCCSSSCCC--HHHHGGGHHHHHHHTT---CCCHHHHHHHHHHHHHHHSSCHHH------
T ss_pred HhccCCHHHHHHHHHHHHHHhCCCCCCCc--HHHHHhHHHHHHHHHc---CCCHHHHHHHHHHHHHHhCCCHHH------
Confidence 56678899999999999999985434432 3344566666666553 333223333455555554321000
Q ss_pred chHHHH-HHHHHHHHHhhcCCchhHHHHHHHHHHHHhcccCC-----CcHHHHHHHHHHhhc
Q 002385 149 CDKLVV-EMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESED-----VSWDLLRILLASVRK 204 (929)
Q Consensus 149 ~ddLI~-eLFktFF~iVr~~hp~kV~~~M~dIMs~VIEESE~-----VP~eLLDvIL~~Ll~ 204 (929)
...++. .++..++..+... ...|......+|..+....+. +...++..|+.-|..
T Consensus 292 ~~~~~~~~~v~~Lv~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~ 352 (530)
T 1wa5_B 292 IQAVIDVRIPKRLVELLSHE-STLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSS 352 (530)
T ss_dssp HHHHHHTTCHHHHHHGGGCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTC
T ss_pred HHHHHhcCcHHHHHHHHCCC-ChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcC
Confidence 011111 2344455555432 344555555555555543322 122355555555543
No 91
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=37.61 E-value=85 Score=34.67 Aligned_cols=56 Identities=23% Similarity=0.250 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHhcccCCch-hhHHhhHHHHHhhhhhhhccCCCcCeehhhhHHHHHHhh
Q 002385 33 NLLDKVEHLLANVEQAPSR-SMRDALLPTMKGLITNDLLRRSDMDVRLSVTSCISEITR 90 (929)
Q Consensus 33 KRLkkL~~eLs~vDQ~pvd-S~~~SL~pl~k~LVs~~LLkHKDkdVRlyVAcCLADILR 90 (929)
..++.+...|+.+-.+... ........+...|+. ||.|.|.+|+..++.||+.+..
T Consensus 224 ~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~--LL~~~~~~v~~~a~~aL~~l~~ 280 (529)
T 3tpo_A 224 GYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVR--LLHHNDPEVLADSCWAISYLTD 280 (529)
T ss_dssp HHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHH--HTTSSCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHH--HhcCCcHHHHHHHHHHHHHhhh
Confidence 3455566666666443221 012233444445553 7899999999999999999884
No 92
>2eqm_A PHD finger protein 20-like 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2jtf_A
Probab=37.14 E-value=83 Score=28.20 Aligned_cols=49 Identities=14% Similarity=0.291 Sum_probs=36.7
Q ss_pred cCCeEEEeeCCCCceEEEEEEEecCCCCeEEEEcCCCc---ceeeecCcceEE
Q 002385 713 VGSRIKVWWPMDETFYKGVVDNYDPIKKKHRILYADGD---EEILNLKKERWE 762 (929)
Q Consensus 713 VG~RVkV~WP~D~~wY~G~V~syd~~tkkH~V~YDDGD---~E~L~L~~Ek~e 762 (929)
||.+|.+.-+. +.||.++|+.-+....+-.|.||.=+ -||+.....++.
T Consensus 22 vGmkLEA~D~~-~~~~~a~i~~v~~~~~~v~VHfdGW~~~yDeWv~~dS~~I~ 73 (88)
T 2eqm_A 22 IGARLEALDYL-QKWYPSRIEKIDYEEGKMLVHFERWSHRYDEWIYWDSNRLR 73 (88)
T ss_dssp SSCEEEEECTT-SCEEEEEEEEEETTTTEEEEEESSSTTTEEEEEETTSCCEE
T ss_pred CCCEEEEEcCC-CCeeEEEEEEEeccCCEEEEEECCCCCcccEEeeCCCCcEe
Confidence 99999998765 47999999999988888999998332 255555544444
No 93
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=37.08 E-value=1.2e+02 Score=31.37 Aligned_cols=118 Identities=10% Similarity=0.102 Sum_probs=63.4
Q ss_pred hccCC-CcCeehhhhHHHHHHhhhcCCCCCCChhHHHH-----HHHHHHHHhcccCCCCCcchHHHHHHHHHhhhhceee
Q 002385 69 LLRRS-DMDVRLSVTSCISEITRITAPDSPYDDELMKE-----FFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCL 142 (929)
Q Consensus 69 LLkHK-DkdVRlyVAcCLADILRIyAPDAPYtDdqLKD-----IFqLfV~qf~~LaD~sSP~F~qy~yLLEtLAeVKS~V 142 (929)
+|.+. |..||..++-||..|..- +.+..+. +...++..| .+.+...-......|.+|+....
T Consensus 72 ~L~~~~~~~v~~~a~~~L~~l~~~-------~~~~~~~~~~~~~i~~L~~lL---~~~~~~vr~~a~~~L~~l~~~~~-- 139 (450)
T 2jdq_A 72 FLKRKENCTLQFESAWVLTNIASG-------NSLQTRIVIQAGAVPIFIELL---SSEFEDVQEQAVWALGNIAGDST-- 139 (450)
T ss_dssp HHTCTTCHHHHHHHHHHHHHHHSS-------CHHHHHHHHHTTHHHHHHHHT---TCSCHHHHHHHHHHHHHHHTTCH--
T ss_pred HHCCCCCHHHHHHHHHHHHHHhcC-------CHHHHHHHHhCCCHHHHHHHH---cCCCHHHHHHHHHHHHHHccCCH--
Confidence 56777 899999999999999852 2333332 333444433 33322233445666666665311
Q ss_pred eeccCCchHHHH--HHHHHHHHHhhcCCchhHHHHHHHHHHHHhccc-CC----CcHHHHHHHHHHhh
Q 002385 143 LMLDLECDKLVV--EMFQHFLKVIRSNHPHFVFAAMETIMTLVIDES-ED----VSWDLLRILLASVR 203 (929)
Q Consensus 143 LMlDLe~ddLI~--eLFktFF~iVr~~hp~kV~~~M~dIMs~VIEES-E~----VP~eLLDvIL~~Ll 203 (929)
++-+.+. .++..+...+..+....|.......|..+.... .. +-..++..|+.-+.
T Consensus 140 -----~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~ 202 (450)
T 2jdq_A 140 -----MCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLF 202 (450)
T ss_dssp -----HHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGTGGGHHHHHHHTT
T ss_pred -----HHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHc
Confidence 0111111 234555555554455667666666677666443 11 12456666666554
No 94
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=36.89 E-value=1.6e+02 Score=35.50 Aligned_cols=41 Identities=20% Similarity=0.394 Sum_probs=29.5
Q ss_pred CcCeehhhhHHHHHHhhhcCCCCCCC---hhHHHHHHHHHHHHhcc
Q 002385 74 DMDVRLSVTSCISEITRITAPDSPYD---DELMKEFFQLAVSAFEN 116 (929)
Q Consensus 74 DkdVRlyVAcCLADILRIyAPDAPYt---DdqLKDIFqLfV~qf~~ 116 (929)
+.++|..+.-||++|+....| |++ +..+..+|..++.++..
T Consensus 247 ~~~~~~~a~~~L~~i~~~~~~--~~~~~~~~~~~~l~~~~l~~l~~ 290 (1049)
T 3m1i_C 247 SPDTRAITLKCLTEVSNLKIP--QDNDLIKRQTVLFFQNTLQQIAT 290 (1049)
T ss_dssp SHHHHHHHHHHHHHHHHCCCC--TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred CHhHHHHHHHHHHHHHhCCCC--cchhhHHHHHHHHHHHHHHHHHH
Confidence 788999999999999988543 332 34667777777775543
No 95
>3dlm_A Histone-lysine N-methyltransferase setdb1; setdb1_human, structural genomics, structural genomics consortium, SGC, alternative splicing; 1.77A {Homo sapiens}
Probab=35.61 E-value=40 Score=35.05 Aligned_cols=45 Identities=18% Similarity=0.208 Sum_probs=35.0
Q ss_pred ccccccCCeEEEeeCCCCceEEEEEEEecC--CCCeEEEEcCCCccee
Q 002385 708 LNEQLVGSRIKVWWPMDETFYKGVVDNYDP--IKKKHRILYADGDEEI 753 (929)
Q Consensus 708 ~ge~lVG~RVkV~WP~D~~wY~G~V~syd~--~tkkH~V~YDDGD~E~ 753 (929)
.|+=.||.||-.-|- ...||.|+|+..-+ ...+..|.|+++....
T Consensus 6 ~~~l~Vg~~vlg~k~-~~~W~rg~v~~I~~~~~g~~YkVkF~~~g~~i 52 (213)
T 3dlm_A 6 QGDLIVSMRILGKKR-TKTWHKGTLIAIQTVGPGKKYKVKFDNKGKSL 52 (213)
T ss_dssp ETTEETTCEEEEECT-TSBEEEEEEEEEEEETTEEEEEEEESSSCEEE
T ss_pred cCcEEEccEEEEEec-CCcEEEEEEEEEEECCCCeEEEEEEcCCCCEE
Confidence 355569999999995 57999999999655 3467999999666553
No 96
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=35.13 E-value=1.7e+02 Score=33.66 Aligned_cols=133 Identities=15% Similarity=0.097 Sum_probs=70.0
Q ss_pred hccCCCcCeehhhhHHHHHHhhhcCCCCCCChhHHHHHHHHHHHHhc-ccCCCCCcchHHHHHHHHHhhhhceeeeeccC
Q 002385 69 LLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFE-NLSHASGRYYMKALSILDTVAKVRSCLLMLDL 147 (929)
Q Consensus 69 LLkHKDkdVRlyVAcCLADILRIyAPDAPYtDdqLKDIFqLfV~qf~-~LaD~sSP~F~qy~yLLEtLAeVKS~VLMlDL 147 (929)
++.++|..+|-++-.++..++.- . . |+..+++.+|. .|.++ +|+ -+-.-|.+|+.++.
T Consensus 82 l~~s~~~~~Krl~YL~l~~~~~~----~---~----e~~~L~iN~l~kDl~~~-n~~--ir~lALr~L~~i~~------- 140 (621)
T 2vgl_A 82 LLSSNRYTEKQIGYLFISVLVNS----N---S----ELIRLINNAIKNDLASR-NPT--FMGLALHCIANVGS------- 140 (621)
T ss_dssp GGGCSCHHHHHHHHHHHHHSCCC----C---H----HHHHHHHHHHHHHHHSC-CHH--HHHHHHHHHHHHCC-------
T ss_pred HhcCCCHHHHHHHHHHHHHHccC----C---c----HHHHHHHHHHHHhcCCC-CHH--HHHHHHHHhhccCC-------
Confidence 66777888887777776665522 1 1 55577777765 45533 333 36677888888764
Q ss_pred CchHHHHHHHHHHHHHhh-cCCchhHHHHHHHHHHHHhccc-CCCcH-HHHHHHHHHhhccCCCCChhhHHHHHHHHhhc
Q 002385 148 ECDKLVVEMFQHFLKVIR-SNHPHFVFAAMETIMTLVIDES-EDVSW-DLLRILLASVRKENQDVSPTSWKLGEKVFTKC 224 (929)
Q Consensus 148 e~ddLI~eLFktFF~iVr-~~hp~kV~~~M~dIMs~VIEES-E~VP~-eLLDvIL~~Ll~~~ks~~PaAy~LA~~VI~~C 224 (929)
.+++..+...++..+. .+....|+....--+..+..-. +.++. .+++.|..-|-..+....-+|..+-..|+...
T Consensus 141 --~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~ 218 (621)
T 2vgl_A 141 --REMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKN 218 (621)
T ss_dssp --HHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHC
T ss_pred --HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhC
Confidence 4566666666666652 2333445543333333333322 23332 45555555443333333333444444444433
No 97
>1y96_A Gemin6, SIP2, GEM-associated protein 6; SM fold, protein complex, RNA binding protein; 2.00A {Homo sapiens}
Probab=34.93 E-value=33 Score=31.12 Aligned_cols=30 Identities=23% Similarity=0.371 Sum_probs=26.3
Q ss_pred ccccCCeEEEeeCCCCceEEEEEEEecCCCC
Q 002385 710 EQLVGSRIKVWWPMDETFYKGVVDNYDPIKK 740 (929)
Q Consensus 710 e~lVG~RVkV~WP~D~~wY~G~V~syd~~tk 740 (929)
.++||+.|+|-=- |+..|.|.|..|||.+.
T Consensus 13 ~~li~KeV~V~l~-dg~~y~G~l~tvDp~s~ 42 (86)
T 1y96_A 13 QDYIYKEVRVTAS-EKNEYKGWVLTTDPVSA 42 (86)
T ss_dssp HHTTTCEEEEEET-TTEEEEEEEEEECTTTC
T ss_pred HhhcCCEEEEEEc-CCCEEEEEEEEECCCce
Confidence 5689999999876 77899999999999765
No 98
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=34.69 E-value=3.1e+02 Score=26.14 Aligned_cols=22 Identities=18% Similarity=0.244 Sum_probs=19.1
Q ss_pred hhccCCCcCeehhhhHHHHHHh
Q 002385 68 DLLRRSDMDVRLSVTSCISEIT 89 (929)
Q Consensus 68 ~LLkHKDkdVRlyVAcCLADIL 89 (929)
.+|.+.|..||..++.||..|.
T Consensus 103 ~lL~~~~~~v~~~a~~~L~~l~ 124 (252)
T 4db8_A 103 QLLSSPNEQILQEALWALSNIA 124 (252)
T ss_dssp HGGGCSCHHHHHHHHHHHHHHT
T ss_pred HHHcCCCHHHHHHHHHHHHHhh
Confidence 3678889999999999999995
No 99
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=32.94 E-value=99 Score=32.11 Aligned_cols=124 Identities=9% Similarity=0.115 Sum_probs=62.6
Q ss_pred hccC-CCcCeehhhhHHHHHHhhhcCCCCCCChhHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHhhhhceeeeeccC
Q 002385 69 LLRR-SDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDL 147 (929)
Q Consensus 69 LLkH-KDkdVRlyVAcCLADILRIyAPDAPYtDdqLKDIFqLfV~qf~~LaD~sSP~F~qy~yLLEtLAeVKS~VLMlDL 147 (929)
+|.+ .+..||..++.||..|.+-..|...+ ..+..++..++..+. +.+..........|.+|+....-.
T Consensus 157 ~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~--~~~~~~l~~L~~~l~---~~~~~v~~~a~~~L~~l~~~~~~~----- 226 (450)
T 2jdq_A 157 LFSKQNRLTMTRNAVWALSNLCRGKSPPPEF--AKVSPCLNVLSWLLF---VSDTDVLADACWALSYLSDGPNDK----- 226 (450)
T ss_dssp HTTSCCCHHHHHHHHHHHHHHHCCSSSCCCG--GGTGGGHHHHHHHTT---CCCHHHHHHHHHHHHHHTSSSHHH-----
T ss_pred HhcCCCCHHHHHHHHHHHHHHhCCCCCCCCH--HHHHHHHHHHHHHHc---cCCHHHHHHHHHHHHHHHCCCcHH-----
Confidence 4553 68899999999999999865454433 223555555665553 333223333445555554321000
Q ss_pred CchHHH-HHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcccCC-----CcHHHHHHHHHHhhc
Q 002385 148 ECDKLV-VEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESED-----VSWDLLRILLASVRK 204 (929)
Q Consensus 148 e~ddLI-~eLFktFF~iVr~~hp~kV~~~M~dIMs~VIEESE~-----VP~eLLDvIL~~Ll~ 204 (929)
...++ ..++..++..+... ...|......+|..+....+. +...++..|+.-+..
T Consensus 227 -~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~ 287 (450)
T 2jdq_A 227 -IQAVIDAGVCRRLVELLMHN-DYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSS 287 (450)
T ss_dssp -HHHHHHTTTHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTC
T ss_pred -HHHHHHcCcHHHHHHHHCCC-chhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcC
Confidence 00111 12344455555432 345555556666665554332 222456666655543
No 100
>3sd4_A PHD finger protein 20; tudor domain, transcription; 1.93A {Homo sapiens} PDB: 3q1j_A
Probab=32.21 E-value=86 Score=26.53 Aligned_cols=35 Identities=17% Similarity=0.328 Sum_probs=30.0
Q ss_pred cCCeEEEeeCCCCceEEEEEEEecCCCCeEEEEcCC
Q 002385 713 VGSRIKVWWPMDETFYKGVVDNYDPIKKKHRILYAD 748 (929)
Q Consensus 713 VG~RVkV~WP~D~~wY~G~V~syd~~tkkH~V~YDD 748 (929)
||.++.+.-+... ||.++|+..+-..++-.|.||.
T Consensus 15 vGmkLEa~d~~~p-~~~AtV~~v~~~~~~~~VhfdG 49 (69)
T 3sd4_A 15 VGAQLEARDRLKN-WYPAHIEDIDYEEGKVLIHFKR 49 (69)
T ss_dssp TTCEEEEECTTSC-EEEEEEEEEETTTTEEEEEETT
T ss_pred CCCEEEEEECCCC-ccccEEEEEeccCCEEEEEeCC
Confidence 8999999888665 6999999987667888999984
No 101
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=32.05 E-value=71 Score=30.22 Aligned_cols=150 Identities=11% Similarity=0.123 Sum_probs=0.0
Q ss_pred hhccCCCcCeehhhhHHHHHHhhhcCCCCCCChhHHHHHH---HHHHHHhcccCCCCCcchHHHHHHHHHhh--hhceee
Q 002385 68 DLLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFF---QLAVSAFENLSHASGRYYMKALSILDTVA--KVRSCL 142 (929)
Q Consensus 68 ~LLkHKDkdVRlyVAcCLADILRIyAPDAPYtDdqLKDIF---qLfV~qf~~LaD~sSP~F~qy~yLLEtLA--eVKS~V 142 (929)
.+|.+.|.+||..++.||..|. +.....++.+ ..+-.-+.-|.+.+...-.....+|.+|+ .-....
T Consensus 51 ~ll~~~~~~v~~~a~~~L~~l~--------~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 122 (252)
T 4hxt_A 51 KLLTSTDSEVQKEAARALANIA--------SGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIK 122 (252)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHT--------TSCHHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHH--------cCChHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHH
Q ss_pred eeccCCchHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcccCC-----CcHHHHHHHHHHhhccCCCCChhhHHHH
Q 002385 143 LMLDLECDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESED-----VSWDLLRILLASVRKENQDVSPTSWKLG 217 (929)
Q Consensus 143 LMlDLe~ddLI~eLFktFF~iVr~~hp~kV~~~M~dIMs~VIEESE~-----VP~eLLDvIL~~Ll~~~ks~~PaAy~LA 217 (929)
.+.+...-+.+.++++ +....|......+|..+....+. +...++..|+.-+...+....-.|...-
T Consensus 123 ~~~~~~~i~~L~~~l~--------~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L 194 (252)
T 4hxt_A 123 AIVDAGGVEVLVKLLT--------STDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARAL 194 (252)
T ss_dssp HHHHTTHHHHHHHHTT--------CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHc--------CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHH
Q ss_pred HHHHhhchHHHHHHHH
Q 002385 218 EKVFTKCAAKLKTNLK 233 (929)
Q Consensus 218 ~~VI~~CadKL~p~I~ 233 (929)
..++.......+..+.
T Consensus 195 ~~l~~~~~~~~~~l~~ 210 (252)
T 4hxt_A 195 ANIASGPTSAIKAIVD 210 (252)
T ss_dssp HHHTTSBHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHH
No 102
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=30.84 E-value=1e+02 Score=34.06 Aligned_cols=23 Identities=26% Similarity=0.351 Sum_probs=20.0
Q ss_pred hhccCCCcCeehhhhHHHHHHhh
Q 002385 68 DLLRRSDMDVRLSVTSCISEITR 90 (929)
Q Consensus 68 ~LLkHKDkdVRlyVAcCLADILR 90 (929)
.||.|.+..||..+|.||+.|..
T Consensus 323 ~LL~~~~~~v~~~A~~aL~nl~a 345 (510)
T 3ul1_B 323 SLLTNPKTNIQKEATWTMSNITA 345 (510)
T ss_dssp -CTTCSSHHHHHHHHHHHHHHTT
T ss_pred HHhcCCCHHHHHHHHHHHHHHHc
Confidence 47899999999999999999874
No 103
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=30.68 E-value=79 Score=39.35 Aligned_cols=86 Identities=14% Similarity=0.137 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHhhcCCchhHHHHHHHHHH---HHhcccCCCcHHHHHHHHHHhhcc------------CCCCChhhHH
Q 002385 151 KLVVEMFQHFLKVIRSNHPHFVFAAMETIMT---LVIDESEDVSWDLLRILLASVRKE------------NQDVSPTSWK 215 (929)
Q Consensus 151 dLI~eLFktFF~iVr~~hp~kV~~~M~dIMs---~VIEESE~VP~eLLDvIL~~Ll~~------------~ks~~PaAy~ 215 (929)
.++..||+.++.+ ...+|. +......++. ..+......=..||..||..|... .+....+|..
T Consensus 529 ~~~~~Ll~~ll~~-~~~~p~-l~~~~i~~l~~l~~~~~~~p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~ 606 (1204)
T 3a6p_A 529 NDGIELLQMVLNF-DTKDPL-ILSCVLTNVSALFPFVTYRPEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACS 606 (1204)
T ss_dssp HHHHHHHHHHHHC-CCSCHH-HHHHHHHHHHHHGGGGGTCGGGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCChH-HHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhhccCCcccccccccHHHHHHHHHHHH
Confidence 5677777776553 345665 4443333333 233321112233445555444321 0111223333
Q ss_pred HHHHHHhhchHHHHHHHHHHHHh
Q 002385 216 LGEKVFTKCAAKLKTNLKEAVQS 238 (929)
Q Consensus 216 LA~~VI~~CadKL~p~I~q~fnS 238 (929)
.-..+|..|.+.|.||+.++++.
T Consensus 607 al~~L~~~~~~~L~p~~~~i~~~ 629 (1204)
T 3a6p_A 607 SIIKMCRDYPQLVLPNFDMLYNH 629 (1204)
T ss_dssp HHHHHHHHCHHHHGGGHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHH
Confidence 33478999999998888766653
No 104
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=30.35 E-value=68 Score=33.53 Aligned_cols=50 Identities=8% Similarity=0.095 Sum_probs=36.0
Q ss_pred cCCeEEEeeCCCCceEEEEEEEecCCCC---------eEEEEcCCC-cceeeecCcceEE
Q 002385 713 VGSRIKVWWPMDETFYKGVVDNYDPIKK---------KHRILYADG-DEEILNLKKERWE 762 (929)
Q Consensus 713 VG~RVkV~WP~D~~wY~G~V~syd~~tk---------kH~V~YDDG-D~E~L~L~~Ek~e 762 (929)
||--|-.-|....+||+|.|+.+..... -.+|.|||= +...+.|.-.-++
T Consensus 5 i~~~vd~~d~~~Gawfea~i~~v~~~~~~~~~~~d~~~y~v~y~~~~~~~~~~~~~~~ir 64 (226)
T 3ask_A 5 VNEYVDARDTNMGAWFEAQVVRVTRKAPSRPALEEDVIYHVKYDDYPENGVVQMNSRDVR 64 (226)
T ss_dssp TTCEEEEECTTTCCEEEEEEEEEEECC------CCCEEEEEEETTCGGGCEEEEEGGGEE
T ss_pred cCceEEeeecCCCceeEEEEEEEeccccccCCCCCceEEEeecccCcccCceeccccccc
Confidence 7888999999999999999999988542 345788754 4455555433333
No 105
>1n9r_A SMF, small nuclear ribonucleoprotein F, snRNP-F, SM protein F; heptamer, translation; 2.80A {Saccharomyces cerevisiae} SCOP: b.38.1.1 PDB: 1n9s_A
Probab=30.00 E-value=46 Score=29.98 Aligned_cols=58 Identities=17% Similarity=0.213 Sum_probs=37.6
Q ss_pred ccccccCCeEEEeeCCCCceEEEEEEEecCCCC---eEEEEcCCCcce----eeecCcceEEEee
Q 002385 708 LNEQLVGSRIKVWWPMDETFYKGVVDNYDPIKK---KHRILYADGDEE----ILNLKKERWELIK 765 (929)
Q Consensus 708 ~ge~lVG~RVkV~WP~D~~wY~G~V~syd~~tk---kH~V~YDDGD~E----~L~L~~Ek~e~l~ 765 (929)
.=..++|++|.|+--..++-|.|++.+||.--. .-.+.|.+|... .+-+.-..+.++.
T Consensus 25 ~L~~~i~k~V~V~Lk~g~~~~~G~L~~~D~~MNlvL~d~~E~~~~~~~~~lg~v~IRG~nI~~I~ 89 (93)
T 1n9r_A 25 FLKGLVNHRVGVKLKFNSTEYRGTLVSTDNYFNLQLNEAEEFVAGVSHGTLGEIFIRCNNVLYIR 89 (93)
T ss_dssp -CGGGTTSEEEEEESSTTEEEEEEEEECCTTTCEEEEEEEEEETTEEEEECCSEEECGGGEEEEE
T ss_pred HHHHhCCCEEEEEEcCCCEEEEEEEEEEccccEEEEeeEEEEcCCCeEeEcCEEEEcCCeEEEEE
Confidence 446789999999876544999999999998665 334555444321 2334455555554
No 106
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=29.39 E-value=33 Score=30.28 Aligned_cols=30 Identities=20% Similarity=0.407 Sum_probs=24.5
Q ss_pred HHHHHhhhcCC-CCCCCh---hHHHHHHHHHHHH
Q 002385 84 CISEITRITAP-DSPYDD---ELMKEFFQLAVSA 113 (929)
Q Consensus 84 CLADILRIyAP-DAPYtD---dqLKDIFqLfV~q 113 (929)
=|..+||+|+| ++||+. +||+....-.|+.
T Consensus 27 RIh~mLkmf~~~~~~~~~it~~eL~~fL~~~v~e 60 (74)
T 1ldd_A 27 KIHSFLKITVPKDWGYNRITLQQLEGYLNTLADE 60 (74)
T ss_dssp HHHHHHHHHSCGGGCCTTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCCCCCCcCCHHHHHHHHHHHHhC
Confidence 36789999999 578976 9999988877765
No 107
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=29.27 E-value=3.4e+02 Score=25.85 Aligned_cols=23 Identities=35% Similarity=0.319 Sum_probs=19.9
Q ss_pred hccCCCcCeehhhhHHHHHHhhh
Q 002385 69 LLRRSDMDVRLSVTSCISEITRI 91 (929)
Q Consensus 69 LLkHKDkdVRlyVAcCLADILRI 91 (929)
+|++.|.+||..++.||..++.-
T Consensus 20 ~L~s~~~~~~~~a~~~L~~~l~~ 42 (252)
T 4db8_A 20 QLNSDDMQEQLSATRKFSQILSD 42 (252)
T ss_dssp HHHSSCSSHHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHHcC
Confidence 67889999999999999888765
No 108
>1i4k_A Putative snRNP SM-like protein; core snRNP domain, RNA binding protein; HET: CIT; 2.50A {Archaeoglobus fulgidus} SCOP: b.38.1.1 PDB: 1i5l_A*
Probab=28.32 E-value=54 Score=27.90 Aligned_cols=56 Identities=13% Similarity=0.188 Sum_probs=37.4
Q ss_pred ccccCCeEEEeeCCCCceEEEEEEEecCCCC---eEEEEcCCCcc----eeeecCcceEEEeeC
Q 002385 710 EQLVGSRIKVWWPMDETFYKGVVDNYDPIKK---KHRILYADGDE----EILNLKKERWELIKG 766 (929)
Q Consensus 710 e~lVG~RVkV~WP~D~~wY~G~V~syd~~tk---kH~V~YDDGD~----E~L~L~~Ek~e~l~~ 766 (929)
..++|++|.|+-- +.+-|.|++.+||.--. ...+.|..+.. ..+-+.-..+.++..
T Consensus 10 ~~~~~~~V~V~L~-~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~lg~v~iRG~~I~~i~~ 72 (77)
T 1i4k_A 10 NRSLKSPVIVRLK-GGREFRGTLDGYDIHMNLVLLDAEEIQNGEVVRKVGSVVIRGDTVVFVSP 72 (77)
T ss_dssp HTTTTSEEEEEET-TSCEEEEEEEEECTTCCEEEEEEEEEETTEEEEEEEEEEECGGGEEEEEE
T ss_pred HHhCCCEEEEEEc-CCCEEEEEEEEEcCCCCeEEeeEEEEecCCcEeECCEEEECCCEEEEEEe
Confidence 5678999999766 57899999999998665 34445543321 233445566666654
No 109
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=26.47 E-value=2e+02 Score=26.74 Aligned_cols=22 Identities=23% Similarity=0.167 Sum_probs=19.8
Q ss_pred hccCCCcCeehhhhHHHHHHhh
Q 002385 69 LLRRSDMDVRLSVTSCISEITR 90 (929)
Q Consensus 69 LLkHKDkdVRlyVAcCLADILR 90 (929)
||.+.|.+||..++.||..|.+
T Consensus 20 LL~s~~~~v~~~a~~~L~~l~~ 41 (210)
T 4db6_A 20 QLNSPDQQELQSALRKLSQIAS 41 (210)
T ss_dssp HTTCSCHHHHHHHHHHHHHHHT
T ss_pred HhcCCCHHHHHHHHHHHHHHHc
Confidence 7889999999999999999874
No 110
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=26.27 E-value=6.8e+02 Score=27.45 Aligned_cols=62 Identities=16% Similarity=0.179 Sum_probs=37.7
Q ss_pred hccCC-CcCeehhhhHHHHHHhhhcCCCCCCChhHHHHHHHH-HHHH-hcccCCCCCcchHHHHHHHHHhhh
Q 002385 69 LLRRS-DMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQL-AVSA-FENLSHASGRYYMKALSILDTVAK 137 (929)
Q Consensus 69 LLkHK-DkdVRlyVAcCLADILRIyAPDAPYtDdqLKDIFqL-fV~q-f~~LaD~sSP~F~qy~yLLEtLAe 137 (929)
||.+. +..||..+|.||..|..- ++++-+.|... .|.. +..|.+++...-.+....|.+||.
T Consensus 108 lL~~~~~~~lq~~Aa~aL~nias~-------~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~ 172 (510)
T 3ul1_B 108 FLGKTDCSPIQFESAWALTNIASG-------TSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAG 172 (510)
T ss_dssp HTTCTTCHHHHHHHHHHHHHHHTS-------CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred HHCCCCCHHHHHHHHHHHHHHhcC-------CHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Confidence 56654 478999999999998743 45555555542 2222 223444444455556777777763
No 111
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=25.63 E-value=8.5e+02 Score=30.01 Aligned_cols=106 Identities=9% Similarity=0.071 Sum_probs=57.0
Q ss_pred hHHHHHHHHHHHH----Hhhc---CCchhH---HHHHHHHHHHHhcccCCCcHHH----HHHHHHHhhccCCCCChhhHH
Q 002385 150 DKLVVEMFQHFLK----VIRS---NHPHFV---FAAMETIMTLVIDESEDVSWDL----LRILLASVRKENQDVSPTSWK 215 (929)
Q Consensus 150 ddLI~eLFktFF~----iVr~---~hp~kV---~~~M~dIMs~VIEESE~VP~eL----LDvIL~~Ll~~~ks~~PaAy~ 215 (929)
.+.+..||+.+|. .|.. +||..+ +..+..|......-.=.+|.+. +++|+-.+.-...+.+-.+.+
T Consensus 792 ~~~~~~il~~vf~~Tl~mi~~~~~~~Pe~r~~ff~ll~~~~~~~f~~~~~~~~~~~~~~~~~~~~a~~h~~r~~~~~~l~ 871 (1023)
T 4hat_C 792 PQGVILILQSVFECTLDMINKDFTEYPEHRVEFYKLLKVINEKSFAAFLELPPAAFKLFVDAICWAFKHNNRDVEVNGLQ 871 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCSSSSHHHHHHHHHHHHHHHHHCTHHHHTSCHHHHHHHHHHHHHHHTCCCHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHChHHHHcCCHHHHHHHHHHHHHHcCCCchHHHHHHHH
Confidence 4555566666554 5554 566554 3344444443333223477554 455555555455555666667
Q ss_pred HHHHHHhhchHHH-HHHHHHHHHhcCCCCchhHHHHHHHhccCCCCC
Q 002385 216 LGEKVFTKCAAKL-KTNLKEAVQSRGIALDDYAEIVACICGSDDENP 261 (929)
Q Consensus 216 LA~~VI~~CadKL-~p~I~q~fnS~Gi~ld~Y~eIV~sI~q~~s~~l 261 (929)
+..+++.++...- ..+..+|++. -|-.++..||..-++++
T Consensus 872 ~~~~ll~~~~~~~~~~~~~~f~~~------~~~~~~~~~~~v~td~~ 912 (1023)
T 4hat_C 872 IALDLVKNIERMGNVPFANEFHKN------YFFIFVSETFFVLTDSD 912 (1023)
T ss_dssp HHHHHHHHHHHHCSSHHHHHHHHH------HHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHhcCChHHHHHHHHH------HHHHHHHHHHHHHhCch
Confidence 7777777776421 1244455553 25566666666666655
No 112
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=25.32 E-value=6.2e+02 Score=26.66 Aligned_cols=74 Identities=11% Similarity=0.090 Sum_probs=36.9
Q ss_pred HHHHHHHHhhcCCchhHHHHHHHHHHHHhcccCCCcHHHH---HHHHHHhhccCCCCChhhHHHHHHHHhhchHHHHH
Q 002385 156 MFQHFLKVIRSNHPHFVFAAMETIMTLVIDESEDVSWDLL---RILLASVRKENQDVSPTSWKLGEKVFTKCAAKLKT 230 (929)
Q Consensus 156 LFktFF~iVr~~hp~kV~~~M~dIMs~VIEESE~VP~eLL---DvIL~~Ll~~~ks~~PaAy~LA~~VI~~CadKL~p 230 (929)
+|..+.+.+...++ .+..-..+.|..+|+....-|...+ ..|...|-..+.+.--+|-..-..+....++++-.
T Consensus 168 v~~~l~~g~ksKN~-R~R~e~l~~l~~li~~~G~~~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~v~k 244 (266)
T 2of3_A 168 MTPMLLDALKSKNA-RQRSECLLVIEYYITNAGISPLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQMWK 244 (266)
T ss_dssp HHHHHHHGGGCSCH-HHHHHHHHHHHHHHHHHCSGGGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHccCCH-HHHHHHHHHHHHHHHhcCCCccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 44445555555554 3444445566778888765555554 44554454444333333433333444444444433
No 113
>2fhd_A RAD9 homolog, DNA repair protein RHP9/CRB2; tamdem tudor domains, cell cycle; HET: DNA MSE PO4; 2.40A {Schizosaccharomyces pombe}
Probab=23.80 E-value=1.4e+02 Score=29.62 Aligned_cols=44 Identities=9% Similarity=0.150 Sum_probs=34.5
Q ss_pred ccCCeEEEeeCC-CCceEEEEEEEec----CCCCeEEEEcCCCcceeee
Q 002385 712 LVGSRIKVWWPM-DETFYKGVVDNYD----PIKKKHRILYADGDEEILN 755 (929)
Q Consensus 712 lVG~RVkV~WP~-D~~wY~G~V~syd----~~tkkH~V~YDDGD~E~L~ 755 (929)
.+--||=-||++ ...||.++...-. ....+..|+|||+..-.++
T Consensus 7 ~~~NrVfAff~G~p~~YYPATcvg~~~~~~~~~~~y~VrFdDs~~~~V~ 55 (153)
T 2fhd_A 7 SFKNRVLAFFKGYPSFYYPATLVAPVHSAVTSSIMYKVQFDDATMSTVN 55 (153)
T ss_dssp CGGGEEEEECCSSSCCEEEEEEEEEECCSSCCBCEEEEEETTSCEEEEE
T ss_pred cccceEEEEcCCCcccccceEEEccCCCcccCCeEEEEEEcCCCCCccC
Confidence 346788899995 6789999999877 3567899999999655533
No 114
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=23.63 E-value=2.5e+02 Score=32.62 Aligned_cols=150 Identities=12% Similarity=0.146 Sum_probs=0.0
Q ss_pred hhccCCCcCeehhhhHHHHHHhhhcCCCCCCChhHHHHHHH---HHHHHhcc-cCCCCCcchHHHHHHHHHhhhh---ce
Q 002385 68 DLLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQ---LAVSAFEN-LSHASGRYYMKALSILDTVAKV---RS 140 (929)
Q Consensus 68 ~LLkHKDkdVRlyVAcCLADILRIyAPDAPYtDdqLKDIFq---LfV~qf~~-LaD~sSP~F~qy~yLLEtLAeV---KS 140 (929)
..|.+.|.++|..+|.+|++|. .+..++..|. .+...|.. |.|++..--...+..|.+|+.. ..
T Consensus 41 ~~L~S~~~~~r~~A~~al~~l~---------~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~ 111 (684)
T 4gmo_A 41 KDLKSPDAKSRTTAAGAIANIV---------QDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADF 111 (684)
T ss_dssp HHHSSSCCSHHHHHHHHHHHHT---------TSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHHH---------cCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchH
Q ss_pred eeeeccCCchHHHHHHHHHHHHHhhcCCc-------------hhHHHHHHHHHHHHhcccCC-----CcHHHHHHHHHHh
Q 002385 141 CLLMLDLECDKLVVEMFQHFLKVIRSNHP-------------HFVFAAMETIMTLVIDESED-----VSWDLLRILLASV 202 (929)
Q Consensus 141 ~VLMlDLe~ddLI~eLFktFF~iVr~~hp-------------~kV~~~M~dIMs~VIEESE~-----VP~eLLDvIL~~L 202 (929)
|.-|...+--.-+..+|+.+...+....+ ..+...+..++..+-+-++. +....+..|+..|
T Consensus 112 ~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L 191 (684)
T 4gmo_A 112 CVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRL 191 (684)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHH
Q ss_pred hccCCCCChhhHHHHHHHHhhchH
Q 002385 203 RKENQDVSPTSWKLGEKVFTKCAA 226 (929)
Q Consensus 203 l~~~ks~~PaAy~LA~~VI~~Cad 226 (929)
+..+....-.....+.-+..-+.+
T Consensus 192 ~~~~~~~~~v~~~a~~~L~~ls~d 215 (684)
T 4gmo_A 192 ISADIAPQDIYEEAISCLTTLSED 215 (684)
T ss_dssp HHHCCSCHHHHHHHHHHHHHHHTT
T ss_pred HhcCCCcHHHHHHHHHHHHHHhcc
No 115
>3s51_A Protein FACI, fanconi anemia group I protein homolog; DNA repair, DNA binding protein; 3.30A {Mus musculus} PDB: 3s4z_A* 3s4w_A
Probab=23.38 E-value=2.3e+02 Score=36.48 Aligned_cols=112 Identities=16% Similarity=0.207 Sum_probs=73.8
Q ss_pred hHHHHHHhhhcCCCCCCChhHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHhhhhceeeeeccCCchHHHHHHHHHHH
Q 002385 82 TSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDLECDKLVVEMFQHFL 161 (929)
Q Consensus 82 AcCLADILRIyAPDAPYtDdqLKDIFqLfV~qf~~LaD~sSP~F~qy~yLLEtLAeVKS~VLMlDLe~ddLI~eLFktFF 161 (929)
..+|+++|| |.|.+.+++..|..=|++.|..|.-.+=|.+-.+.-+|-+-..-+ .|| .=|..+|..++
T Consensus 174 li~l~~mFr----Dv~Ls~eel~~VV~Kv~~~l~~l~l~ElPpLvyQLLlLs~kg~k~-~IL-------~gl~~yF~~~~ 241 (1308)
T 3s51_A 174 MIQLTSVFK----DVCLTPEEMNLVVAKVLTMFSKLNLQEIPPLVYQLLVLSSKGSRR-SVL-------DGIIAFFRELD 241 (1308)
T ss_dssp HHHHHHHGG----GSCCCHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHTTSCHH-HHH-------HHHHHHHHHHH
T ss_pred HHHHHHHHH----cCCCCHHHHHHHHHHHHHhhhcCChhhchHHHHHHHHHhcccchH-HHH-------HHHHHHHHHhh
Confidence 456677776 669999999999999999999999888888877776666554322 222 12355555554
Q ss_pred HHhh-----------cCCc-hhHHHHHHHHHHHHhcccCCCcHHHHHHHHHHhhccC
Q 002385 162 KVIR-----------SNHP-HFVFAAMETIMTLVIDESEDVSWDLLRILLASVRKEN 206 (929)
Q Consensus 162 ~iVr-----------~~hp-~kV~~~M~dIMs~VIEESE~VP~eLLDvIL~~Ll~~~ 206 (929)
...+ ..+| ..++..-.+||-.|--. -...+++...+|..|....
T Consensus 242 ~~~~~~~~~~~~~d~~~~s~~elr~vEgTVL~HI~~A-ik~D~~Lgre~LK~~K~~~ 297 (1308)
T 3s51_A 242 KQHREEQSSDELSELITAPADELYHVEGTVILHIVFA-IKLDCELGRELLKHLKAGQ 297 (1308)
T ss_dssp HHHHHHHCC-------CCSHHHHHHHHHHHHHHHHHH-HHHCHHHHHHHHHHHCCSS
T ss_pred hhcchhccCCcccccccCCHHHHHHHHHHHHHHHHHH-HHcCHHHHHHHHHHHhhhc
Confidence 3211 1344 44554555666665333 2578888999999887654
No 116
>1hx8_A Synapse-enriched clathrin adaptor protein LAP; all alpha, alpha helices repeats, coiled-coil, endocytosis/exocytosis complex; 2.20A {Drosophila melanogaster} SCOP: a.7.8.2 a.118.9.3
Probab=23.23 E-value=3.2e+02 Score=28.93 Aligned_cols=81 Identities=10% Similarity=0.137 Sum_probs=49.4
Q ss_pred CCCHHHHHHHHHHHHHHHHhcccCCch-------hhHHhhHHHHHhhhhhhhccCCCcCeehhhhHH--HHHHhhhcCCC
Q 002385 25 PSPVDEVINLLDKVEHLLANVEQAPSR-------SMRDALLPTMKGLITNDLLRRSDMDVRLSVTSC--ISEITRITAPD 95 (929)
Q Consensus 25 piS~dELLKRLkkL~~eLs~vDQ~pvd-------S~~~SL~pl~k~LVs~~LLkHKDkdVRlyVAcC--LADILRIyAPD 95 (929)
.++++.|++.|..|...|..+=+-... =...+|.++.+++. ++|-++| |..||+-| -+
T Consensus 172 ~l~~~~lL~~l~~lQ~li~~ll~~~~~~~~~~n~~~~~Al~llv~Ds~------------~lY~~i~~gi~~lLe~~-fe 238 (299)
T 1hx8_A 172 SMNAEKLLKTLPVLQAQLDALLEFDCQSNDLSNGVINMSFMLLFRDLI------------RLFACYNDGIINLLEKY-FD 238 (299)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHTTCCCGGGCCSHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHH-TT
T ss_pred hCCHHHHHHHHHHHHHHHHHHHCCCCCcccccchHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHH-hc
Confidence 456888988888888777766432111 12345555555432 5565554 44466655 35
Q ss_pred CCCCh-hHHHHHHHHHHHHhcccC
Q 002385 96 SPYDD-ELMKEFFQLAVSAFENLS 118 (929)
Q Consensus 96 APYtD-dqLKDIFqLfV~qf~~La 118 (929)
.++.| .+--+||+-|..|+..|.
T Consensus 239 m~~~d~~~al~iykrf~~q~~~L~ 262 (299)
T 1hx8_A 239 MNKKHARDALDLYKKFLVRMDRVG 262 (299)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 45554 555669999999888776
No 117
>3zym_A Phosphatidylinositol-binding clathrin assembly PR vesicle-associated membrane protein...; endocytosis, synaptobrevin, VAMP2, VAMP3, AP180; HET: PO4; 2.03A {Rattus norvegicus}
Probab=22.61 E-value=1.8e+02 Score=31.20 Aligned_cols=80 Identities=9% Similarity=0.127 Sum_probs=52.6
Q ss_pred CCHHHHHHHHHHHHHHHHhcccCCc-------hhhHHhhHHHHHhhhhhhhccCCCcCeehhhhHH--HHHHhhhcCCCC
Q 002385 26 SPVDEVINLLDKVEHLLANVEQAPS-------RSMRDALLPTMKGLITNDLLRRSDMDVRLSVTSC--ISEITRITAPDS 96 (929)
Q Consensus 26 iS~dELLKRLkkL~~eLs~vDQ~pv-------dS~~~SL~pl~k~LVs~~LLkHKDkdVRlyVAcC--LADILRIyAPDA 96 (929)
++++.|+..|..|...|..+=+-.+ +=.+.||.++.+++ +++|.+.| |..||+-| -|.
T Consensus 166 ~~~~~Ll~~l~~lQ~lid~ll~~~~~~~~~~N~l~~~A~~llv~ds------------~~lY~~inegii~lLe~f-fem 232 (310)
T 3zym_A 166 MNTEKLLKTVPIIQNQMDALLDFNVNSNELTNGVINAAFMLLFKDA------------IRLFAAYNEGIINLLEKY-FDM 232 (310)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHTSCCCGGGCCSHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHG-GGS
T ss_pred CCHHHHHHHHHHHHHHHHHHHcCCcccccccchHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHH-hcc
Confidence 5688899998888888877754221 11345666666554 35666666 55577766 345
Q ss_pred CCCh-hHHHHHHHHHHHHhcccC
Q 002385 97 PYDD-ELMKEFFQLAVSAFENLS 118 (929)
Q Consensus 97 PYtD-dqLKDIFqLfV~qf~~La 118 (929)
++.| ..-.+||+-|..|...|.
T Consensus 233 ~~~da~~al~iykrf~~Q~e~L~ 255 (310)
T 3zym_A 233 KKNQCKEGLDIYKKFLTRMTRIS 255 (310)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH
Confidence 5554 566678998888887775
No 118
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=21.80 E-value=4e+02 Score=32.91 Aligned_cols=103 Identities=12% Similarity=0.162 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHHHHhcccCCchhhHHhhHHHHHhhhhhhhccCCCcC------eehhhhHHHHHHhhhcCCCCCCChh
Q 002385 28 VDEVINLLDKVEHLLANVEQAPSRSMRDALLPTMKGLITNDLLRRSDMD------VRLSVTSCISEITRITAPDSPYDDE 101 (929)
Q Consensus 28 ~dELLKRLkkL~~eLs~vDQ~pvdS~~~SL~pl~k~LVs~~LLkHKDkd------VRlyVAcCLADILRIyAPDAPYtDd 101 (929)
..+.|..+..|-+.|...-.+...-|.+++-..--.+++..|-.|+|-- .++++.+|..-+|.+ ..+
T Consensus 773 ~~~vL~l~s~iv~~~~~~~~~~~~~il~~vf~~Tl~mi~~~~~~~Pe~r~~ff~ll~~~~~~~f~~~~~~-------~~~ 845 (1023)
T 4hat_C 773 DAEVLNCMTTVVEKVGHMIPQGVILILQSVFECTLDMINKDFTEYPEHRVEFYKLLKVINEKSFAAFLEL-------PPA 845 (1023)
T ss_dssp CHHHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHSSCSSSSHHHHHHHHHHHHHHHHHCTHHHHTS-------CHH
T ss_pred cHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHChHHHHcC-------CHH
Confidence 3677777777777776543333334555555555566777777776632 345556677777753 466
Q ss_pred HHHHHHHHHHHHhccc-CCCCCcchHHHHHHHHHhhh
Q 002385 102 LMKEFFQLAVSAFENL-SHASGRYYMKALSILDTVAK 137 (929)
Q Consensus 102 qLKDIFqLfV~qf~~L-aD~sSP~F~qy~yLLEtLAe 137 (929)
+++.||.-++-.|++= .|.+..-..=-+.||++++.
T Consensus 846 ~~~~~~~~~~~a~~h~~r~~~~~~l~~~~~ll~~~~~ 882 (1023)
T 4hat_C 846 AFKLFVDAICWAFKHNNRDVEVNGLQIALDLVKNIER 882 (1023)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHh
Confidence 7777777777666631 12233334445566676664
No 119
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=21.71 E-value=2.8e+02 Score=25.66 Aligned_cols=105 Identities=13% Similarity=0.163 Sum_probs=54.5
Q ss_pred hhccCCCcCeehhhhHHHHHHhhhcCCCCCCChhHHHHHHHH-HHHH-hcccCCCCCcchHHHHHHHHHhhhhceeeeec
Q 002385 68 DLLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQL-AVSA-FENLSHASGRYYMKALSILDTVAKVRSCLLML 145 (929)
Q Consensus 68 ~LLkHKDkdVRlyVAcCLADILRIyAPDAPYtDdqLKDIFqL-fV~q-f~~LaD~sSP~F~qy~yLLEtLAeVKS~VLMl 145 (929)
.+|.+.|..||..++.||..|..- +++....|+.. ++.. +..|.+.+...-......|.+|+.-..-.
T Consensus 61 ~lL~~~~~~v~~~a~~~L~~l~~~-------~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~--- 130 (210)
T 4db6_A 61 QLLSSPNEQILQEALWALSNIASG-------GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ--- 130 (210)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHTTS-------CHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH---
T ss_pred HHHcCCCHHHHHHHHHHHHHHhcC-------CcHHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHH---
Confidence 367788999999999999998731 22333333220 1222 22344444333444566777766321000
Q ss_pred cCCchHHH-HHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcc
Q 002385 146 DLECDKLV-VEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDE 186 (929)
Q Consensus 146 DLe~ddLI-~eLFktFF~iVr~~hp~kV~~~M~dIMs~VIEE 186 (929)
...++ ..++..++..++.. ...|......+|..+...
T Consensus 131 ---~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~~ 168 (210)
T 4db6_A 131 ---IQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASG 168 (210)
T ss_dssp ---HHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTS
T ss_pred ---HHHHHHcCcHHHHHHHHcCC-CHHHHHHHHHHHHHHHcC
Confidence 11111 12445555555544 345666666666666654
No 120
>4emk_B U6 snRNA-associated SM-like protein LSM6; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_B
Probab=21.62 E-value=78 Score=26.98 Aligned_cols=40 Identities=18% Similarity=0.421 Sum_probs=29.2
Q ss_pred ccccCCeEEEeeCCCCceEEEEEEEecCCCC---eEEEEcCCCc
Q 002385 710 EQLVGSRIKVWWPMDETFYKGVVDNYDPIKK---KHRILYADGD 750 (929)
Q Consensus 710 e~lVG~RVkV~WP~D~~wY~G~V~syd~~tk---kH~V~YDDGD 750 (929)
..++|++|.|.-- +.+.|.|++.+||.--. ...+.|.+|.
T Consensus 10 ~~~~~k~V~V~Lk-~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~ 52 (75)
T 4emk_B 10 NKVIGKKVLIRLS-SGVDYKGILSCLDGYMNLALERTEEYVNGK 52 (75)
T ss_dssp HHTTTSEEEEECT-TSCEEEEEEEEECTTCEEEEEEEEEEETTE
T ss_pred HHhCCCeEEEEEc-CCcEEEEEEEEEcCcceEEEccEEEEecCC
Confidence 4678999999766 56899999999998554 2344454443
No 121
>1h64_1 SnRNP SM-like protein; SM fold, spliceosome, snRNP core; 1.9A {Pyrococcus abyssi} SCOP: b.38.1.1 PDB: 1m8v_A*
Probab=21.54 E-value=80 Score=26.75 Aligned_cols=55 Identities=13% Similarity=0.165 Sum_probs=36.1
Q ss_pred ccccCCeEEEeeCCCCceEEEEEEEecCCCC---eEEEEcCCCcc----eeeecCcceEEEee
Q 002385 710 EQLVGSRIKVWWPMDETFYKGVVDNYDPIKK---KHRILYADGDE----EILNLKKERWELIK 765 (929)
Q Consensus 710 e~lVG~RVkV~WP~D~~wY~G~V~syd~~tk---kH~V~YDDGD~----E~L~L~~Ek~e~l~ 765 (929)
..++|++|.|.-- |.+-|.|++.+||.--. ...+.|..|.. ..+-+.-..+.++.
T Consensus 10 ~~~~~~~V~V~l~-~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~lg~v~iRG~~I~~i~ 71 (75)
T 1h64_1 10 HRSLDKDVLVILK-KGFEFRGRLIGYDIHLNVVLADAEMIQDGEVVKRYGKIVIRGDNVLAIS 71 (75)
T ss_dssp HTTTTSEEEEEET-TSEEEEEEEEEECTTCCEEEEEEEEEETTEEEEEEEEEEECGGGEEEEE
T ss_pred HHHCCCEEEEEEC-CCCEEEEEEEEEeCCCCeEEeeEEEEeeCCceeECCEEEECCCEEEEEE
Confidence 5679999999766 57899999999998665 34455543321 12334455555554
No 122
>1ljo_A Archaeal SM-like protein AF-SM2; snRNP, core snRNP domain, RNA binding protein, unknown F; 1.95A {Archaeoglobus fulgidus} SCOP: b.38.1.1
Probab=21.38 E-value=87 Score=26.70 Aligned_cols=56 Identities=18% Similarity=0.229 Sum_probs=36.3
Q ss_pred ccccCCeEEEeeCCCCceEEEEEEEecCCCC---eEEEEcCCCcc----eeeecCcceEEEee
Q 002385 710 EQLVGSRIKVWWPMDETFYKGVVDNYDPIKK---KHRILYADGDE----EILNLKKERWELIK 765 (929)
Q Consensus 710 e~lVG~RVkV~WP~D~~wY~G~V~syd~~tk---kH~V~YDDGD~----E~L~L~~Ek~e~l~ 765 (929)
..++|++|.|.--.+++-|.|++.+||.--. ...+.|..|.. ..+-+.-..+.++.
T Consensus 11 ~~~~~~~v~V~lk~g~~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~lg~v~iRG~nI~~i~ 73 (77)
T 1ljo_A 11 KSMVGKIIRVEMKGEENQLVGKLEGVDDYMNLYLTNAMECKGEEKVRSLGEIVLRGNNVVLIQ 73 (77)
T ss_dssp HHTTTSEEEEEETTCSSEEEEEEEEECTTCCEEEEEEEEEETTEEEEEEEEEEECGGGEEEEE
T ss_pred HHHCCCEEEEEEeCCCEEEEEEEEEECCcceEEEeeEEEEecCCcEeECCeEEEeCCeEEEEE
Confidence 5678999999886443899999999998655 34444544332 12334455555554
No 123
>1mgq_A SM-like protein; LSM, RNA-binding, archea, RNA binding protein; 1.70A {Methanothermobacterthermautotrophicus} SCOP: b.38.1.1 PDB: 1i81_A 1loj_A* 1jbm_A 1jri_A
Probab=21.21 E-value=76 Score=27.62 Aligned_cols=40 Identities=13% Similarity=0.174 Sum_probs=29.8
Q ss_pred ccccccCCeEEEeeCCCCceEEEEEEEecCCCC---eEEEEcCC
Q 002385 708 LNEQLVGSRIKVWWPMDETFYKGVVDNYDPIKK---KHRILYAD 748 (929)
Q Consensus 708 ~ge~lVG~RVkV~WP~D~~wY~G~V~syd~~tk---kH~V~YDD 748 (929)
.=..++|++|.|+-- |.+-|.|++.+||.--. ...+.|..
T Consensus 19 ~L~~~~~~~V~V~Lk-~g~~~~G~L~~~D~~mNlvL~d~~e~~~ 61 (83)
T 1mgq_A 19 ALGNSLNSPVIIKLK-GDREFRGVLKSFDLHMNLVLNDAEELED 61 (83)
T ss_dssp HHHHTTTSEEEEEET-TTEEEEEEEEEECTTCCEEEEEEEEEET
T ss_pred HHHHhCCCEEEEEEc-CCcEEEEEEEEECCCceeEEccEEEEec
Confidence 346679999999766 67899999999998665 34444443
No 124
>4emh_A Probable U6 snRNA-associated SM-like protein LSM4; SM fold, mRNA decay, PRE-mRNA splicing, LSM proteins, RNA BI protein; 2.20A {Schizosaccharomyces pombe}
Probab=21.05 E-value=3e+02 Score=25.32 Aligned_cols=61 Identities=18% Similarity=0.198 Sum_probs=38.2
Q ss_pred cccccccCCeEEEeeCCCCceEEEEEEEecCCCCe---EEE-EcCCCcc----eeeecCcceEEEeeCCC
Q 002385 707 ALNEQLVGSRIKVWWPMDETFYKGVVDNYDPIKKK---HRI-LYADGDE----EILNLKKERWELIKGGS 768 (929)
Q Consensus 707 ~~ge~lVG~RVkV~WP~D~~wY~G~V~syd~~tkk---H~V-~YDDGD~----E~L~L~~Ek~e~l~~~s 768 (929)
..=..++|++|.|+--. .+-|.|++.+||.--.- -.+ .+.||+. ..+-+.-..+.++..+.
T Consensus 19 ~lL~~~igk~V~V~Lk~-G~~~~G~L~~~D~~MNlvL~d~~e~~~dg~~~~~lg~v~IRG~nI~~I~~pd 87 (105)
T 4emh_A 19 TLLNATQGRPILVELKN-GETFNGHLENCDNYMNLTLREVIRTMPDGDKFFRLPECYIRGNNIKYLRIQD 87 (105)
T ss_dssp -------CCEEEEEETT-SCEEEEEEEEECTTCCEEEEEEEEECTTSCEEEEEEEEEECGGGEEEEEC--
T ss_pred HHHHHhCCCEEEEEECC-CCEEEEEEEEEcCCceEEEEEEEEEccCCceeeEcCeEEEeCCeEEEEecCH
Confidence 34567899999997764 57899999999986653 223 3457852 35666778888887653
No 125
>1i8f_A Putative snRNP SM-like protein; beta barrel-like SMAP monomers form 35-stranded beta-sheet I heptamer, structural genomics; 1.75A {Pyrobaculum aerophilum} SCOP: b.38.1.1 PDB: 1lnx_A*
Probab=20.83 E-value=64 Score=27.93 Aligned_cols=36 Identities=14% Similarity=0.254 Sum_probs=28.7
Q ss_pred ccccCCeEEEeeCCCCceEEEEEEEecCCCC---eEEEEc
Q 002385 710 EQLVGSRIKVWWPMDETFYKGVVDNYDPIKK---KHRILY 746 (929)
Q Consensus 710 e~lVG~RVkV~WP~D~~wY~G~V~syd~~tk---kH~V~Y 746 (929)
..++|++|.|+-- +.+-|.|++.+||.--. ...+.|
T Consensus 17 ~~~~~~~V~V~l~-~g~~~~G~L~~~D~~mNlvL~d~~e~ 55 (81)
T 1i8f_A 17 QDSIGKQVLVKLR-DSHEIRGILRSFDQHVNLLLEDAEEI 55 (81)
T ss_dssp HTTTTSEEEEEEG-GGEEEEEEEEEECTTCCEEEEEEEEE
T ss_pred HHHCCCeEEEEEc-CCcEEEEEEEEEcCCCeeEEccEEEE
Confidence 5678999999766 57899999999998665 345555
No 126
>3zyl_A Phosphatidylinositol-binding clathrin assembly PR; endocytosis, endobrevin, synaptobrevin, VAMP2, VAMP3, AP180, membrane, adaptor protein; 1.70A {Rattus norvegicus} PDB: 3zyk_A 1hf8_A 1hfa_A* 1hg2_A* 1hg5_A*
Probab=20.81 E-value=1.5e+02 Score=31.25 Aligned_cols=80 Identities=9% Similarity=0.127 Sum_probs=49.6
Q ss_pred CCHHHHHHHHHHHHHHHHhcccCCc-------hhhHHhhHHHHHhhhhhhhccCCCcCeehhhhHH--HHHHhhhcCCCC
Q 002385 26 SPVDEVINLLDKVEHLLANVEQAPS-------RSMRDALLPTMKGLITNDLLRRSDMDVRLSVTSC--ISEITRITAPDS 96 (929)
Q Consensus 26 iS~dELLKRLkkL~~eLs~vDQ~pv-------dS~~~SL~pl~k~LVs~~LLkHKDkdVRlyVAcC--LADILRIyAPDA 96 (929)
++++.||+.|..|...|..+=+-.+ +=.+.||.++.+++ +++|.++| |..||+-| -|-
T Consensus 166 ~~~~~Ll~~l~~lQ~lld~ll~~~~~~~~~~N~li~~A~~lLv~es------------~~lY~~in~gii~lLe~f-fem 232 (271)
T 3zyl_A 166 MNTEKLLKTVPIIQNQMDALLDFNVNSNELTNGVINAAFMLLFKDA------------IRLFAAYNEGIINLLEKY-FDM 232 (271)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHTTCCCGGGCCSHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHTG-GGS
T ss_pred CCHHHHHHHHHHHHHHHHHHHccCcccccccChHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHH-hcc
Confidence 4688899998888888877644222 11344555555554 34565555 45577666 344
Q ss_pred CCCh-hHHHHHHHHHHHHhcccC
Q 002385 97 PYDD-ELMKEFFQLAVSAFENLS 118 (929)
Q Consensus 97 PYtD-dqLKDIFqLfV~qf~~La 118 (929)
++.| ..--+||+-|..|...|.
T Consensus 233 ~~~da~~aleiykrf~~Q~~~L~ 255 (271)
T 3zyl_A 233 KKNQCKEGLDIYKKFLTRMTRIS 255 (271)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHH
Confidence 5554 455568888888776654
No 127
>2xdt_A Endoplasmic reticulum aminopeptidase 1; glycoprotein, metal-binding, metalloprotease, protease, hydrolase, adaptive immunity; HET: NAG; 2.70A {Homo sapiens} PDB: 2yd0_A* 3qnf_A* 3mdj_A*
Probab=20.63 E-value=1.1e+03 Score=28.35 Aligned_cols=96 Identities=18% Similarity=0.120 Sum_probs=59.2
Q ss_pred chHHHHHHHHHHHHHhh-cCCchhHHHHHHHHHHHHhcccCCCcHHHHHHHHHHhhccCCCCChhhH-HHHHH-HHhhch
Q 002385 149 CDKLVVEMFQHFLKVIR-SNHPHFVFAAMETIMTLVIDESEDVSWDLLRILLASVRKENQDVSPTSW-KLGEK-VFTKCA 225 (929)
Q Consensus 149 ~ddLI~eLFktFF~iVr-~~hp~kV~~~M~dIMs~VIEESE~VP~eLLDvIL~~Ll~~~ks~~PaAy-~LA~~-VI~~Ca 225 (929)
|-..-.++|+.++.--. ...|.+++..+- ...| -..+..+.|+..+.... .+.=. .|... -|..-.
T Consensus 698 c~~~a~~~f~~~~~~~~~~~i~~~lr~~vy---~~~~-----g~~~~~~~l~~~y~~~~---~~~ek~~ll~aL~c~~~~ 766 (897)
T 2xdt_A 698 CVQRAEGYFRKWKESNGNLSLPVDVTLAVF---AVGA-----QSTEGWDFLYSKYQFSL---SSTEKSQIEFALCRTQNK 766 (897)
T ss_dssp HHHHHHHHHHHHHHTTTCSCCCHHHHHHHH---HHHT-----TSHHHHHHHHHHHTTCC---CHHHHHHHHHHHTTCCCH
T ss_pred HHHHHHHHHHHHhcCCCcCCCCcchhhhEE---EEec-----CCHHHHHHHHHHHHccC---CHHHHHHHHHHhccCCCH
Confidence 88888889999987422 245667654332 2223 24567888888876432 22111 12222 244555
Q ss_pred HHHHHHHHHHHHhcCCCCchhHHHHHHHhc
Q 002385 226 AKLKTNLKEAVQSRGIALDDYAEIVACICG 255 (929)
Q Consensus 226 dKL~p~I~q~fnS~Gi~ld~Y~eIV~sI~q 255 (929)
..|+.+|...|+...+...++.-++..|+.
T Consensus 767 ~~l~~~L~~~~~~~~i~~qd~~~~~~~v~~ 796 (897)
T 2xdt_A 767 EKLQWLLDESFKGDKIKTQEFPQILTLIGR 796 (897)
T ss_dssp HHHHHHHHHHHHCSSSCGGGHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCCCcHHHHHHHHHHHHc
Confidence 668999988887545677788888888864
No 128
>3m9q_A Protein MALE-specific lethal-3; chromodomain, MSL3, methyllysine recognition, aromatic CAGE, complex, transcription upregulation; 1.29A {Drosophila melanogaster} SCOP: b.34.13.0
Probab=20.25 E-value=94 Score=28.87 Aligned_cols=37 Identities=16% Similarity=0.149 Sum_probs=29.2
Q ss_pred cccCCeEEEeeCC---CCceEEEEEEEecCCC-------CeEEEEcC
Q 002385 711 QLVGSRIKVWWPM---DETFYKGVVDNYDPIK-------KKHRILYA 747 (929)
Q Consensus 711 ~lVG~RVkV~WP~---D~~wY~G~V~syd~~t-------kkH~V~YD 747 (929)
=.+|.+|-+|+++ ...+|++.|....... -.+.|.|.
T Consensus 20 f~~GEkVLc~h~d~~kg~~lYeAKIl~v~~~~~~~~~~~~~Y~VHY~ 66 (101)
T 3m9q_A 20 FHKGEIVLCYEPDKSKARVLYTSKVLNVFERRNEHGLRFYEYKIHFQ 66 (101)
T ss_dssp CCTTCEEEEECCCTTSCCCEEEEEEEEEEEEECTTSCEEEEEEEEET
T ss_pred ccCCCEEEEEecCCCCCCcceEeEEEEEEecCCccccCceEEEEEeC
Confidence 3489999999986 5689999999986532 25888885
No 129
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=20.25 E-value=2.3e+02 Score=34.30 Aligned_cols=25 Identities=16% Similarity=0.232 Sum_probs=19.2
Q ss_pred ChhHHHHHHHHHHHHhcccCCCCCcch
Q 002385 99 DDELMKEFFQLAVSAFENLSHASGRYY 125 (929)
Q Consensus 99 tDdqLKDIFqLfV~qf~~LaD~sSP~F 125 (929)
|++|+.-||.-+++.|. ++...+.|
T Consensus 226 t~~q~~~iFt~~lr~l~--~~~~~~~~ 250 (799)
T 1vsy_4 226 TDDQMTFMFNRLQGHLR--TDGQIHSY 250 (799)
T ss_dssp CHHHHHHHHHHHHHHHH--TTCCCSSH
T ss_pred cHHHHHHHHHHHHHhcc--CcCCccch
Confidence 68999999999999998 44434433
Done!