Query 002386
Match_columns 929
No_of_seqs 421 out of 3105
Neff 7.5
Searched_HMMs 46136
Date Thu Mar 28 22:51:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002386.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002386hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0735 AAA+-type ATPase [Post 100.0 1E-105 2E-110 900.9 49.6 743 1-928 3-751 (952)
2 KOG0733 Nuclear AAA ATPase (VC 100.0 7.9E-67 1.7E-71 580.1 24.9 359 550-928 186-595 (802)
3 KOG0730 AAA+-type ATPase [Post 100.0 1.4E-57 3.1E-62 515.2 24.2 334 554-928 184-518 (693)
4 KOG0736 Peroxisome assembly fa 100.0 2E-49 4.4E-54 451.4 20.7 317 589-928 430-755 (953)
5 TIGR01243 CDC48 AAA family ATP 100.0 1.4E-46 3E-51 461.6 27.7 356 550-928 174-537 (733)
6 COG1222 RPT1 ATP-dependent 26S 100.0 1.7E-39 3.7E-44 345.7 17.9 249 548-824 145-393 (406)
7 KOG0741 AAA+-type ATPase [Post 100.0 6.6E-36 1.4E-40 328.5 21.3 349 547-925 214-582 (744)
8 COG0464 SpoVK ATPases of the A 100.0 1.9E-35 4.1E-40 349.0 24.8 322 577-928 5-326 (494)
9 KOG0730 AAA+-type ATPase [Post 100.0 3.3E-36 7.1E-41 341.9 17.2 248 550-826 430-677 (693)
10 KOG0733 Nuclear AAA ATPase (VC 100.0 4.2E-35 9E-40 327.3 18.7 259 550-827 507-773 (802)
11 KOG0736 Peroxisome assembly fa 100.0 9.9E-32 2.1E-36 307.3 19.4 261 550-827 668-936 (953)
12 KOG0734 AAA+-type ATPase conta 100.0 6.1E-32 1.3E-36 297.7 16.6 226 549-795 299-524 (752)
13 KOG0738 AAA+-type ATPase [Post 100.0 6E-32 1.3E-36 289.2 15.9 262 549-828 207-474 (491)
14 KOG0728 26S proteasome regulat 100.0 5.6E-31 1.2E-35 266.4 16.3 244 551-822 144-387 (404)
15 KOG0652 26S proteasome regulat 100.0 8.7E-31 1.9E-35 266.4 13.4 247 549-823 166-412 (424)
16 KOG0727 26S proteasome regulat 100.0 1.9E-30 4.2E-35 262.8 15.8 247 548-822 149-395 (408)
17 KOG0737 AAA+-type ATPase [Post 100.0 2.4E-30 5.2E-35 277.9 15.1 232 546-797 84-316 (386)
18 PTZ00454 26S protease regulato 100.0 6.1E-30 1.3E-34 290.3 19.1 249 549-825 140-388 (398)
19 CHL00195 ycf46 Ycf46; Provisio 100.0 1.5E-29 3.3E-34 292.7 21.0 244 550-828 224-468 (489)
20 KOG0731 AAA+-type ATPase conta 100.0 9.1E-30 2E-34 298.4 19.2 249 548-823 305-553 (774)
21 PF09262 PEX-1N: Peroxisome bi 100.0 1.1E-30 2.4E-35 226.1 6.0 77 94-170 1-80 (80)
22 KOG0739 AAA+-type ATPase [Post 100.0 8.8E-30 1.9E-34 263.6 12.1 227 549-796 128-354 (439)
23 KOG0726 26S proteasome regulat 100.0 3.1E-30 6.7E-35 266.1 8.7 245 550-823 181-426 (440)
24 COG1223 Predicted ATPase (AAA+ 100.0 1.8E-29 3.9E-34 257.3 13.8 238 550-823 117-355 (368)
25 PRK03992 proteasome-activating 100.0 4.7E-29 1E-33 284.5 18.4 250 550-827 127-376 (389)
26 KOG0735 AAA+-type ATPase [Post 100.0 1.5E-28 3.2E-33 278.8 19.0 227 551-797 664-890 (952)
27 PTZ00361 26 proteosome regulat 100.0 2.4E-28 5.2E-33 278.8 18.3 246 550-823 179-424 (438)
28 KOG0729 26S proteasome regulat 100.0 1.5E-28 3.2E-33 250.8 12.3 247 548-823 171-418 (435)
29 TIGR01243 CDC48 AAA family ATP 100.0 5.9E-28 1.3E-32 297.1 20.1 259 550-827 449-714 (733)
30 COG0464 SpoVK ATPases of the A 100.0 7.7E-28 1.7E-32 284.3 20.0 248 550-826 238-486 (494)
31 KOG0732 AAA+-type ATPase conta 100.0 4.9E-28 1.1E-32 290.2 15.7 354 550-918 261-633 (1080)
32 TIGR01241 FtsH_fam ATP-depende 99.9 4.7E-27 1E-31 277.0 18.9 246 550-824 51-296 (495)
33 COG0465 HflB ATP-dependent Zn 99.9 7.4E-27 1.6E-31 270.2 19.0 248 548-824 144-391 (596)
34 TIGR03689 pup_AAA proteasome A 99.9 2.4E-26 5.2E-31 265.6 20.2 195 550-756 178-380 (512)
35 TIGR01242 26Sp45 26S proteasom 99.9 1.8E-26 4E-31 262.1 18.8 245 550-822 118-362 (364)
36 CHL00176 ftsH cell division pr 99.9 2.3E-26 4.9E-31 274.2 19.4 245 550-823 179-423 (638)
37 CHL00206 ycf2 Ycf2; Provisiona 99.9 3.9E-26 8.5E-31 283.4 16.4 213 582-825 1622-1879(2281)
38 TIGR02639 ClpA ATP-dependent C 99.9 3.4E-25 7.4E-30 271.8 21.0 318 553-916 181-522 (731)
39 KOG0740 AAA+-type ATPase [Post 99.9 5.3E-25 1.2E-29 245.4 15.7 258 549-826 148-407 (428)
40 PRK10733 hflB ATP-dependent me 99.9 2E-24 4.3E-29 260.6 20.0 247 548-823 146-392 (644)
41 KOG0651 26S proteasome regulat 99.9 2.2E-25 4.7E-30 233.2 8.4 244 551-822 129-372 (388)
42 PLN00020 ribulose bisphosphate 99.9 2.9E-23 6.4E-28 225.8 20.6 196 585-793 143-352 (413)
43 PRK11034 clpA ATP-dependent Cl 99.9 3.9E-23 8.3E-28 250.5 20.7 317 553-915 185-525 (758)
44 TIGR03345 VI_ClpV1 type VI sec 99.9 4.6E-21 1E-25 236.9 21.6 191 552-778 185-391 (852)
45 COG1222 RPT1 ATP-dependent 26S 99.9 2.3E-22 4.9E-27 215.3 6.8 90 839-928 146-235 (406)
46 CHL00095 clpC Clp protease ATP 99.9 1.5E-20 3.3E-25 233.5 24.0 323 553-915 178-579 (821)
47 CHL00195 ycf46 Ycf46; Provisio 99.9 1.2E-20 2.6E-25 218.8 19.5 229 655-928 81-309 (489)
48 TIGR02881 spore_V_K stage V sp 99.8 8.1E-19 1.8E-23 190.5 18.4 222 552-797 4-243 (261)
49 TIGR03346 chaperone_ClpB ATP-d 99.8 9.5E-19 2.1E-23 218.0 21.2 190 553-778 172-377 (852)
50 PRK10865 protein disaggregatio 99.8 9.7E-19 2.1E-23 217.1 19.4 190 552-777 176-381 (857)
51 CHL00181 cbbX CbbX; Provisiona 99.8 3.5E-18 7.5E-23 187.1 16.6 220 555-797 24-259 (287)
52 COG0542 clpA ATP-binding subun 99.8 7.8E-18 1.7E-22 200.1 18.2 325 552-916 168-562 (786)
53 TIGR02880 cbbX_cfxQ probable R 99.8 1.1E-17 2.3E-22 183.4 18.0 220 555-797 23-258 (284)
54 PF09263 PEX-2N: Peroxisome bi 99.8 1.7E-18 3.7E-23 145.8 7.8 80 3-90 4-87 (87)
55 KOG0737 AAA+-type ATPase [Post 99.7 1.1E-18 2.5E-23 188.3 6.4 92 836-927 84-176 (386)
56 KOG0727 26S proteasome regulat 99.7 1.8E-18 3.9E-23 176.2 7.3 90 839-928 150-239 (408)
57 PF00004 AAA: ATPase family as 99.7 2.3E-17 5E-22 159.1 13.4 130 593-739 1-131 (132)
58 KOG0739 AAA+-type ATPase [Post 99.7 3.9E-18 8.4E-23 177.6 6.1 92 833-928 125-216 (439)
59 KOG0743 AAA+-type ATPase [Post 99.7 1.9E-16 4.2E-21 175.6 18.3 220 540-783 185-411 (457)
60 PF05496 RuvB_N: Holliday junc 99.7 3E-16 6.5E-21 161.5 18.2 195 552-788 22-225 (233)
61 KOG0744 AAA+-type ATPase [Post 99.7 4.1E-17 8.9E-22 172.1 11.6 242 552-821 140-412 (423)
62 KOG0728 26S proteasome regulat 99.7 8.2E-18 1.8E-22 171.2 5.8 90 839-928 142-231 (404)
63 KOG0729 26S proteasome regulat 99.7 1E-17 2.2E-22 171.9 6.4 90 839-928 172-261 (435)
64 KOG0738 AAA+-type ATPase [Post 99.7 1E-17 2.2E-22 180.5 6.5 87 840-927 208-294 (491)
65 KOG0742 AAA+-type ATPase [Post 99.7 5E-16 1.1E-20 167.8 13.6 177 591-788 385-588 (630)
66 PRK00080 ruvB Holliday junctio 99.6 8.2E-15 1.8E-19 164.5 19.5 201 552-794 23-232 (328)
67 PTZ00454 26S protease regulato 99.6 2.8E-16 6.1E-21 179.0 7.6 90 839-928 140-229 (398)
68 KOG0726 26S proteasome regulat 99.6 1.7E-16 3.8E-21 164.9 4.4 89 840-928 181-269 (440)
69 KOG0652 26S proteasome regulat 99.6 3.5E-16 7.6E-21 160.2 5.5 89 840-928 167-255 (424)
70 TIGR00635 ruvB Holliday juncti 99.6 1.6E-14 3.4E-19 160.6 19.2 199 552-792 2-209 (305)
71 COG2255 RuvB Holliday junction 99.6 1.3E-14 2.8E-19 151.8 17.0 201 553-795 25-234 (332)
72 TIGR03689 pup_AAA proteasome A 99.6 8.6E-16 1.9E-20 178.3 7.3 90 839-928 177-276 (512)
73 PRK03992 proteasome-activating 99.6 1.4E-15 3.1E-20 173.9 6.9 90 839-928 126-215 (389)
74 PRK07003 DNA polymerase III su 99.6 4.5E-14 9.7E-19 167.0 19.1 195 552-790 14-226 (830)
75 TIGR00763 lon ATP-dependent pr 99.6 3.6E-14 7.9E-19 175.7 18.2 212 555-796 321-558 (775)
76 KOG0651 26S proteasome regulat 99.6 3E-15 6.5E-20 157.6 6.5 89 840-928 128-216 (388)
77 PRK14956 DNA polymerase III su 99.6 1.1E-13 2.3E-18 158.7 19.1 194 552-789 16-227 (484)
78 PTZ00361 26 proteosome regulat 99.6 4.4E-15 9.6E-20 170.2 7.8 90 839-928 178-267 (438)
79 COG0466 Lon ATP-dependent Lon 99.5 1.3E-13 2.8E-18 159.9 16.2 211 555-794 324-563 (782)
80 PRK12323 DNA polymerase III su 99.5 2.2E-13 4.7E-18 159.4 17.2 194 552-789 14-230 (700)
81 KOG0740 AAA+-type ATPase [Post 99.5 1.1E-14 2.4E-19 163.2 6.0 88 840-928 149-236 (428)
82 PRK14960 DNA polymerase III su 99.5 5.1E-13 1.1E-17 156.8 18.8 194 552-789 13-224 (702)
83 PRK14949 DNA polymerase III su 99.5 6.7E-13 1.5E-17 160.0 20.1 194 552-789 14-225 (944)
84 COG2256 MGS1 ATPase related to 99.5 6E-13 1.3E-17 145.7 17.7 146 591-778 49-207 (436)
85 KOG0731 AAA+-type ATPase conta 99.5 2.3E-14 5E-19 169.5 6.9 89 839-928 306-394 (774)
86 PRK06893 DNA replication initi 99.5 4.7E-13 1E-17 142.4 16.3 167 591-790 40-209 (229)
87 TIGR02902 spore_lonB ATP-depen 99.5 4E-13 8.7E-18 159.3 16.5 222 552-821 63-330 (531)
88 PTZ00112 origin recognition co 99.5 6.6E-13 1.4E-17 157.2 17.8 223 554-823 755-1006(1164)
89 PLN00020 ribulose bisphosphate 99.5 3.5E-14 7.5E-19 155.4 6.6 86 841-928 112-198 (413)
90 KOG0989 Replication factor C, 99.5 6.6E-13 1.4E-17 140.5 15.8 180 551-775 33-222 (346)
91 PRK14962 DNA polymerase III su 99.5 1.3E-12 2.7E-17 152.2 19.4 193 552-788 12-222 (472)
92 PRK14958 DNA polymerase III su 99.5 7.4E-13 1.6E-17 155.7 17.6 195 552-790 14-226 (509)
93 PRK00149 dnaA chromosomal repl 99.5 3.4E-13 7.3E-18 157.8 14.3 178 591-793 149-331 (450)
94 PRK14964 DNA polymerase III su 99.5 1.3E-12 2.9E-17 151.4 19.0 195 552-790 11-223 (491)
95 TIGR02928 orc1/cdc6 family rep 99.5 1.7E-12 3.7E-17 148.0 19.5 226 555-823 16-274 (365)
96 PRK07994 DNA polymerase III su 99.5 1.7E-12 3.6E-17 154.7 20.0 194 552-789 14-225 (647)
97 PRK08691 DNA polymerase III su 99.5 1.4E-12 3.1E-17 154.5 19.1 195 552-790 14-226 (709)
98 PRK06645 DNA polymerase III su 99.5 2.4E-12 5.3E-17 150.4 20.2 196 552-791 19-236 (507)
99 KOG0734 AAA+-type ATPase conta 99.5 6.5E-14 1.4E-18 156.1 6.6 88 840-928 300-387 (752)
100 TIGR00362 DnaA chromosomal rep 99.4 7.6E-13 1.6E-17 152.9 15.2 177 591-793 137-319 (405)
101 TIGR01242 26Sp45 26S proteasom 99.4 8.8E-14 1.9E-18 158.4 6.8 90 839-928 117-206 (364)
102 PRK00411 cdc6 cell division co 99.4 2.6E-12 5.7E-17 148.0 18.8 227 555-825 31-284 (394)
103 PRK14088 dnaA chromosomal repl 99.4 7.1E-13 1.5E-17 153.8 14.1 179 591-793 131-314 (440)
104 PRK14961 DNA polymerase III su 99.4 3.3E-12 7.2E-17 145.2 19.2 190 552-789 14-225 (363)
105 PRK08084 DNA replication initi 99.4 2.5E-12 5.4E-17 137.4 16.7 168 591-793 46-218 (235)
106 PLN03025 replication factor C 99.4 3E-12 6.4E-17 143.2 18.0 189 552-786 11-202 (319)
107 PRK14951 DNA polymerase III su 99.4 2.8E-12 6.1E-17 152.5 17.8 195 552-790 14-231 (618)
108 PRK14086 dnaA chromosomal repl 99.4 1.5E-12 3.2E-17 153.1 15.0 177 592-793 316-497 (617)
109 PRK05563 DNA polymerase III su 99.4 3.8E-12 8.3E-17 151.6 18.7 194 552-789 14-225 (559)
110 PRK10787 DNA-binding ATP-depen 99.4 2.3E-12 5E-17 158.3 17.0 211 555-796 323-559 (784)
111 TIGR03420 DnaA_homol_Hda DnaA 99.4 3.4E-12 7.3E-17 135.4 16.1 168 590-793 38-210 (226)
112 KOG0741 AAA+-type ATPase [Post 99.4 1.5E-13 3.3E-18 153.1 5.9 83 846-928 223-307 (744)
113 PRK14963 DNA polymerase III su 99.4 8.4E-12 1.8E-16 146.5 20.5 194 552-789 12-222 (504)
114 COG1223 Predicted ATPase (AAA+ 99.4 2E-13 4.3E-18 140.6 5.1 85 840-928 117-201 (368)
115 PRK13342 recombination factor 99.4 7.8E-12 1.7E-16 144.7 18.9 160 591-789 37-201 (413)
116 KOG0732 AAA+-type ATPase conta 99.4 1.9E-13 4.2E-18 165.6 5.6 89 840-928 261-354 (1080)
117 PRK14957 DNA polymerase III su 99.4 1E-11 2.2E-16 146.0 19.9 194 552-789 14-225 (546)
118 PRK14952 DNA polymerase III su 99.4 1.1E-11 2.3E-16 147.1 20.2 194 552-789 11-224 (584)
119 PRK05342 clpX ATP-dependent pr 99.4 1.7E-11 3.7E-16 140.3 21.0 232 556-796 73-382 (412)
120 PRK07764 DNA polymerase III su 99.4 8.6E-12 1.9E-16 153.2 19.8 194 552-789 13-226 (824)
121 PRK12402 replication factor C 99.4 1.3E-11 2.8E-16 139.0 19.9 189 553-785 14-227 (337)
122 PRK12422 chromosomal replicati 99.4 2.7E-12 5.8E-17 148.7 14.6 172 591-789 142-318 (445)
123 KOG2004 Mitochondrial ATP-depe 99.4 4.3E-12 9.4E-17 146.3 15.8 212 555-795 412-652 (906)
124 PF05673 DUF815: Protein of un 99.4 1.5E-11 3.2E-16 128.7 18.5 194 551-786 24-243 (249)
125 PRK11034 clpA ATP-dependent Cl 99.4 7.8E-12 1.7E-16 152.6 18.5 214 555-797 459-720 (758)
126 PRK04195 replication factor C 99.4 6.8E-12 1.5E-16 148.0 17.5 188 552-787 12-202 (482)
127 PRK05896 DNA polymerase III su 99.4 1.3E-11 2.8E-16 145.2 19.4 193 552-788 14-224 (605)
128 TIGR01241 FtsH_fam ATP-depende 99.4 3.2E-13 6.8E-18 159.8 5.9 89 839-928 50-138 (495)
129 PRK07133 DNA polymerase III su 99.4 1.1E-11 2.4E-16 148.5 18.7 194 552-789 16-224 (725)
130 PRK14965 DNA polymerase III su 99.4 1E-11 2.2E-16 148.6 18.0 193 552-788 14-224 (576)
131 PRK08451 DNA polymerase III su 99.4 1.8E-11 3.9E-16 143.3 19.4 196 552-791 12-225 (535)
132 PHA02544 44 clamp loader, smal 99.4 1.8E-11 4E-16 136.7 18.5 175 552-775 19-201 (316)
133 PRK14969 DNA polymerase III su 99.4 1.1E-11 2.5E-16 146.6 17.7 195 552-790 14-226 (527)
134 PF00308 Bac_DnaA: Bacterial d 99.4 9.3E-12 2E-16 131.4 15.1 174 591-790 35-214 (219)
135 TIGR02397 dnaX_nterm DNA polym 99.4 2E-11 4.3E-16 138.6 18.7 190 552-789 12-223 (355)
136 PRK06647 DNA polymerase III su 99.3 1.9E-11 4E-16 145.3 18.5 194 552-789 14-225 (563)
137 PRK05642 DNA replication initi 99.3 1.6E-11 3.5E-16 131.1 16.2 168 591-794 46-218 (234)
138 PRK08903 DnaA regulatory inact 99.3 1.3E-11 2.7E-16 131.4 15.4 163 589-792 41-207 (227)
139 PRK14970 DNA polymerase III su 99.3 3E-11 6.4E-16 138.0 19.1 190 552-789 15-214 (367)
140 PRK08727 hypothetical protein; 99.3 1.3E-11 2.9E-16 131.6 15.2 164 591-790 42-210 (233)
141 PRK14959 DNA polymerase III su 99.3 2.8E-11 6E-16 143.1 19.2 192 552-788 14-224 (624)
142 PRK09111 DNA polymerase III su 99.3 3.9E-11 8.4E-16 143.2 20.1 194 552-789 22-238 (598)
143 PRK13341 recombination factor 99.3 2.6E-11 5.7E-16 147.3 18.1 161 591-790 53-223 (725)
144 PRK07940 DNA polymerase III su 99.3 3.4E-11 7.4E-16 137.2 17.7 193 553-783 4-213 (394)
145 PRK14953 DNA polymerase III su 99.3 5E-11 1.1E-15 139.5 19.1 194 552-789 14-225 (486)
146 PRK06305 DNA polymerase III su 99.3 7.7E-11 1.7E-15 137.1 20.1 193 552-788 15-226 (451)
147 PRK14087 dnaA chromosomal repl 99.3 2.2E-11 4.8E-16 141.6 15.3 178 591-794 142-329 (450)
148 TIGR02639 ClpA ATP-dependent C 99.3 7.1E-11 1.5E-15 145.9 20.7 213 555-796 455-715 (731)
149 COG2812 DnaX DNA polymerase II 99.3 1.6E-11 3.4E-16 142.0 13.1 195 553-791 15-227 (515)
150 TIGR00382 clpX endopeptidase C 99.3 5.6E-11 1.2E-15 135.3 17.4 198 590-796 116-388 (413)
151 COG1474 CDC6 Cdc6-related prot 99.3 9.5E-11 2.1E-15 132.3 18.7 220 556-822 19-264 (366)
152 PRK06620 hypothetical protein; 99.3 4.8E-11 1E-15 125.5 14.0 146 591-789 45-194 (214)
153 TIGR00390 hslU ATP-dependent p 99.3 1.3E-10 2.7E-15 130.6 17.6 136 655-795 247-407 (441)
154 PRK00440 rfc replication facto 99.3 1.7E-10 3.7E-15 128.9 18.4 212 552-825 15-228 (319)
155 PRK14948 DNA polymerase III su 99.3 1.8E-10 3.9E-15 138.4 19.7 192 552-787 14-225 (620)
156 COG0593 DnaA ATPase involved i 99.2 8.2E-11 1.8E-15 132.5 15.6 179 591-795 114-297 (408)
157 PRK14954 DNA polymerase III su 99.2 2.3E-10 5.1E-15 136.7 19.9 194 552-789 14-233 (620)
158 PRK14955 DNA polymerase III su 99.2 1.6E-10 3.5E-15 133.0 17.6 194 552-789 14-233 (397)
159 COG0465 HflB ATP-dependent Zn 99.2 5.5E-12 1.2E-16 147.3 5.5 89 839-928 145-233 (596)
160 PRK05201 hslU ATP-dependent pr 99.2 1.2E-10 2.6E-15 130.8 15.6 135 656-795 250-409 (443)
161 PRK09087 hypothetical protein; 99.2 5.9E-11 1.3E-15 125.9 12.3 156 591-794 45-205 (226)
162 PRK14950 DNA polymerase III su 99.2 3.7E-10 8E-15 135.9 19.8 193 552-788 14-225 (585)
163 COG0542 clpA ATP-binding subun 99.2 1.5E-10 3.3E-15 138.6 16.1 217 554-796 491-758 (786)
164 CHL00176 ftsH cell division pr 99.2 1.3E-11 2.8E-16 148.3 6.5 89 839-928 178-266 (638)
165 TIGR03346 chaperone_ClpB ATP-d 99.2 5.5E-10 1.2E-14 140.0 20.9 218 554-797 565-830 (852)
166 TIGR02903 spore_lon_C ATP-depe 99.2 3.4E-10 7.5E-15 136.5 17.9 232 552-821 152-428 (615)
167 TIGR01650 PD_CobS cobaltochela 99.2 1.2E-10 2.7E-15 127.8 12.5 141 590-754 64-233 (327)
168 PRK14971 DNA polymerase III su 99.2 6.4E-10 1.4E-14 133.7 19.6 193 552-788 15-226 (614)
169 TIGR02640 gas_vesic_GvpN gas v 99.2 4.1E-10 9E-15 122.4 16.2 139 591-754 22-198 (262)
170 TIGR03345 VI_ClpV1 type VI sec 99.2 6E-10 1.3E-14 138.7 18.9 216 554-796 566-834 (852)
171 TIGR02880 cbbX_cfxQ probable R 99.2 2.8E-11 6E-16 132.9 5.9 83 845-928 23-115 (284)
172 PRK10865 protein disaggregatio 99.2 8.7E-10 1.9E-14 137.7 19.8 215 554-796 568-832 (857)
173 CHL00095 clpC Clp protease ATP 99.1 7.1E-10 1.5E-14 138.6 18.3 217 554-796 509-785 (821)
174 CHL00181 cbbX CbbX; Provisiona 99.1 3.9E-11 8.5E-16 131.7 5.6 85 843-928 22-116 (287)
175 TIGR02881 spore_V_K stage V sp 99.1 5.5E-11 1.2E-15 129.2 5.8 86 842-928 4-99 (261)
176 KOG2028 ATPase related to the 99.1 8.8E-10 1.9E-14 118.6 14.6 184 592-822 164-367 (554)
177 COG2607 Predicted ATPase (AAA+ 99.1 4.5E-09 9.9E-14 108.1 18.8 194 551-786 57-275 (287)
178 TIGR00678 holB DNA polymerase 99.1 1.4E-09 3.1E-14 112.1 13.9 153 590-776 14-184 (188)
179 COG1224 TIP49 DNA helicase TIP 99.1 1.9E-09 4E-14 116.3 14.5 132 655-825 291-434 (450)
180 TIGR03015 pepcterm_ATPase puta 99.1 7.8E-09 1.7E-13 112.7 19.5 195 591-822 44-265 (269)
181 cd00009 AAA The AAA+ (ATPases 99.1 2E-09 4.3E-14 104.5 13.2 129 589-740 18-151 (151)
182 KOG1969 DNA replication checkp 99.1 4.4E-09 9.6E-14 122.3 17.9 178 586-792 322-515 (877)
183 KOG1051 Chaperone HSP104 and r 99.0 1.2E-08 2.7E-13 124.0 18.9 144 591-755 209-364 (898)
184 KOG0991 Replication factor C, 99.0 4.4E-09 9.5E-14 107.3 12.4 162 592-783 50-214 (333)
185 TIGR02974 phageshock_pspF psp 99.0 6E-09 1.3E-13 116.8 14.7 200 557-792 2-233 (329)
186 PRK13531 regulatory ATPase Rav 99.0 5.1E-09 1.1E-13 120.1 14.1 141 589-752 38-192 (498)
187 PRK04132 replication factor C 99.0 7.4E-09 1.6E-13 126.8 15.9 166 592-788 566-735 (846)
188 PRK09112 DNA polymerase III su 98.9 2E-08 4.3E-13 113.2 17.6 189 552-785 21-241 (351)
189 PRK13407 bchI magnesium chelat 98.9 7.6E-09 1.6E-13 115.4 13.8 80 657-753 130-215 (334)
190 TIGR02030 BchI-ChlI magnesium 98.9 1.1E-08 2.3E-13 114.5 14.8 140 656-823 132-309 (337)
191 PRK11608 pspF phage shock prot 98.9 1.8E-08 3.8E-13 113.1 16.3 199 554-791 6-239 (326)
192 PRK05564 DNA polymerase III su 98.9 2.3E-08 5E-13 111.7 17.1 182 552-778 2-185 (313)
193 CHL00081 chlI Mg-protoporyphyr 98.9 1.6E-08 3.5E-13 113.0 15.6 172 550-753 13-231 (350)
194 CHL00206 ycf2 Ycf2; Provisiona 98.9 8.1E-10 1.7E-14 140.1 5.6 57 862-918 1614-1670(2281)
195 PRK07471 DNA polymerase III su 98.9 3.1E-08 6.8E-13 112.2 17.7 180 552-776 17-231 (365)
196 COG5271 MDN1 AAA ATPase contai 98.9 2.6E-08 5.6E-13 122.0 16.4 139 590-754 1543-1703(4600)
197 COG1219 ClpX ATP-dependent pro 98.9 4.5E-08 9.7E-13 104.4 16.2 199 591-796 98-371 (408)
198 PRK05707 DNA polymerase III su 98.9 5.8E-08 1.3E-12 108.6 17.8 158 590-778 22-198 (328)
199 PF07724 AAA_2: AAA domain (Cd 98.9 6.4E-09 1.4E-13 105.5 9.0 123 590-721 3-132 (171)
200 TIGR01817 nifA Nif-specific re 98.9 2.6E-08 5.6E-13 119.4 15.8 201 552-791 194-427 (534)
201 smart00382 AAA ATPases associa 98.8 3E-08 6.5E-13 95.2 12.7 76 590-668 2-91 (148)
202 PRK10733 hflB ATP-dependent me 98.8 2.6E-09 5.6E-14 129.9 6.5 88 840-928 148-235 (644)
203 COG0714 MoxR-like ATPases [Gen 98.8 9E-09 2E-13 115.8 10.1 137 590-752 43-201 (329)
204 KOG0745 Putative ATP-dependent 98.8 6.5E-08 1.4E-12 106.8 15.9 197 591-796 227-512 (564)
205 PF06068 TIP49: TIP49 C-termin 98.8 1E-07 2.2E-12 105.1 17.3 95 656-778 279-385 (398)
206 COG1221 PspF Transcriptional r 98.8 3E-08 6.6E-13 111.6 13.5 209 551-794 75-311 (403)
207 PF07728 AAA_5: AAA domain (dy 98.8 6.3E-09 1.4E-13 101.8 7.1 117 592-732 1-139 (139)
208 PF00004 AAA: ATPase family as 98.8 4E-09 8.7E-14 101.4 5.6 48 881-928 1-48 (132)
209 COG3604 FhlA Transcriptional r 98.8 3.4E-08 7.3E-13 111.5 13.1 210 550-792 219-456 (550)
210 PRK10820 DNA-binding transcrip 98.8 4.4E-08 9.6E-13 116.6 14.9 205 551-791 201-436 (520)
211 PRK05022 anaerobic nitric oxid 98.8 1.2E-07 2.6E-12 112.8 17.8 204 553-793 186-421 (509)
212 COG2204 AtoC Response regulato 98.8 3.2E-08 7E-13 113.3 12.0 203 553-792 140-374 (464)
213 PRK15429 formate hydrogenlyase 98.8 1.1E-07 2.4E-12 117.3 17.3 204 551-792 373-609 (686)
214 PHA02244 ATPase-like protein 98.8 5.9E-08 1.3E-12 108.0 13.3 128 591-745 120-265 (383)
215 PRK07399 DNA polymerase III su 98.8 1.4E-07 2.9E-12 105.0 16.3 187 553-785 3-222 (314)
216 TIGR02442 Cob-chelat-sub cobal 98.8 7.9E-08 1.7E-12 116.9 15.5 142 591-752 26-212 (633)
217 COG3829 RocR Transcriptional r 98.7 5.1E-08 1.1E-12 111.5 12.1 207 550-790 241-477 (560)
218 PF05621 TniB: Bacterial TniB 98.7 3E-07 6.5E-12 99.6 17.4 196 591-818 62-284 (302)
219 PRK11331 5-methylcytosine-spec 98.7 6.4E-08 1.4E-12 110.4 12.6 138 590-744 194-362 (459)
220 PRK11388 DNA-binding transcrip 98.7 1.4E-07 3E-12 115.7 16.5 200 552-791 323-553 (638)
221 PF05496 RuvB_N: Holliday junc 98.7 1.4E-08 3E-13 105.3 6.4 66 841-914 21-86 (233)
222 PRK15424 propionate catabolism 98.7 1.5E-07 3.3E-12 111.3 15.9 205 552-790 217-463 (538)
223 TIGR02329 propionate_PrpR prop 98.7 8.4E-08 1.8E-12 113.5 13.4 206 551-792 209-450 (526)
224 PRK07993 DNA polymerase III su 98.7 3.1E-07 6.6E-12 103.1 17.0 175 558-778 6-199 (334)
225 PRK06871 DNA polymerase III su 98.7 4.4E-07 9.4E-12 100.9 17.9 175 557-777 5-197 (325)
226 TIGR02031 BchD-ChlD magnesium 98.7 1.3E-07 2.9E-12 113.7 14.7 142 590-754 16-174 (589)
227 smart00350 MCM minichromosome 98.7 1E-07 2.3E-12 113.1 13.3 143 588-755 234-401 (509)
228 TIGR00390 hslU ATP-dependent p 98.7 2.3E-08 5E-13 112.6 7.1 84 845-928 13-99 (441)
229 COG0470 HolB ATPase involved i 98.7 1.2E-07 2.6E-12 106.1 12.9 130 592-750 26-177 (325)
230 PRK08058 DNA polymerase III su 98.7 1.5E-07 3.3E-12 105.7 13.1 135 590-752 28-180 (329)
231 TIGR00602 rad24 checkpoint pro 98.7 3.7E-07 8E-12 109.5 17.0 201 551-788 81-324 (637)
232 PF00158 Sigma54_activat: Sigm 98.7 2E-07 4.3E-12 94.3 12.7 127 556-718 1-143 (168)
233 KOG2035 Replication factor C, 98.7 6E-07 1.3E-11 94.3 16.3 158 591-779 35-224 (351)
234 PF13177 DNA_pol3_delta2: DNA 98.7 1.6E-07 3.4E-12 94.6 11.6 125 590-741 19-161 (162)
235 PRK08769 DNA polymerase III su 98.7 6.2E-07 1.3E-11 99.6 16.9 175 558-779 8-204 (319)
236 PF07726 AAA_3: ATPase family 98.6 7.2E-09 1.6E-13 98.2 0.9 116 592-733 1-130 (131)
237 PRK06964 DNA polymerase III su 98.6 3E-07 6.6E-12 102.9 13.7 138 588-752 19-202 (342)
238 KOG1514 Origin recognition com 98.6 6E-07 1.3E-11 104.9 16.0 233 556-825 398-657 (767)
239 PRK05201 hslU ATP-dependent pr 98.6 5.2E-08 1.1E-12 109.9 6.0 82 845-928 16-102 (443)
240 KOG1942 DNA helicase, TBP-inte 98.6 6.5E-07 1.4E-11 94.4 13.5 130 655-823 296-438 (456)
241 KOG0990 Replication factor C, 98.6 2.3E-07 4.9E-12 99.6 9.7 181 550-775 37-224 (360)
242 COG1239 ChlI Mg-chelatase subu 98.6 1.3E-06 2.8E-11 97.7 15.8 82 657-755 146-233 (423)
243 KOG0744 AAA+-type ATPase [Post 98.6 3.1E-08 6.7E-13 105.7 2.9 87 841-927 139-235 (423)
244 COG1220 HslU ATP-dependent pro 98.5 1.9E-06 4E-11 92.9 14.9 128 656-788 251-403 (444)
245 PRK08699 DNA polymerase III su 98.5 1.1E-06 2.3E-11 98.4 13.6 138 588-752 19-183 (325)
246 KOG1051 Chaperone HSP104 and r 98.5 3.1E-06 6.7E-11 103.5 18.3 139 554-718 562-710 (898)
247 KOG2227 Pre-initiation complex 98.5 1.4E-06 3E-11 97.9 13.8 202 555-792 151-379 (529)
248 PRK06090 DNA polymerase III su 98.5 2.1E-06 4.6E-11 95.3 15.1 155 557-752 6-178 (319)
249 COG5271 MDN1 AAA ATPase contai 98.5 2.8E-07 6E-12 113.4 8.4 139 590-754 888-1047(4600)
250 TIGR02915 PEP_resp_reg putativ 98.5 1E-06 2.2E-11 103.4 12.9 197 555-791 140-371 (445)
251 PF12775 AAA_7: P-loop contain 98.5 1.2E-07 2.5E-12 103.5 4.6 150 590-756 33-195 (272)
252 PRK10923 glnG nitrogen regulat 98.5 2.2E-06 4.7E-11 101.3 15.7 200 554-792 138-371 (469)
253 PF06068 TIP49: TIP49 C-termin 98.4 4.3E-07 9.4E-12 100.1 8.5 78 843-928 23-105 (398)
254 PF13173 AAA_14: AAA domain 98.4 9.9E-07 2.1E-11 85.2 9.9 120 591-745 3-126 (128)
255 PF01637 Arch_ATPase: Archaeal 98.4 1E-06 2.2E-11 93.1 10.5 165 590-778 20-229 (234)
256 PF05729 NACHT: NACHT domain 98.4 2.2E-06 4.8E-11 85.6 11.9 145 592-755 2-164 (166)
257 TIGR00764 lon_rel lon-related 98.4 1.4E-06 3E-11 105.2 12.0 98 709-819 268-387 (608)
258 TIGR00368 Mg chelatase-related 98.4 1.7E-06 3.6E-11 101.8 12.4 156 552-744 190-394 (499)
259 KOG2680 DNA helicase TIP49, TB 98.4 3.7E-06 8E-11 89.1 13.1 133 655-825 288-431 (454)
260 PRK05342 clpX ATP-dependent pr 98.4 3.5E-07 7.5E-12 105.1 5.8 78 846-925 73-156 (412)
261 PF01078 Mg_chelatase: Magnesi 98.3 2.6E-07 5.5E-12 95.3 3.6 46 553-615 2-47 (206)
262 COG1224 TIP49 DNA helicase TIP 98.3 8E-07 1.7E-11 96.4 7.4 76 844-927 39-119 (450)
263 PRK08116 hypothetical protein; 98.3 1.7E-06 3.8E-11 94.2 10.2 72 590-666 114-189 (268)
264 smart00763 AAA_PrkA PrkA AAA d 98.3 1.4E-05 3.1E-10 89.2 17.3 53 555-616 52-104 (361)
265 TIGR02655 circ_KaiC circadian 98.3 1.2E-06 2.7E-11 103.5 9.1 41 873-913 258-301 (484)
266 PF14532 Sigma54_activ_2: Sigm 98.3 1E-06 2.2E-11 86.2 7.1 81 558-668 2-82 (138)
267 PRK11361 acetoacetate metaboli 98.3 6.7E-06 1.5E-10 96.8 15.0 197 555-791 144-375 (457)
268 KOG0743 AAA+-type ATPase [Post 98.3 9.2E-07 2E-11 99.4 6.5 72 841-912 198-269 (457)
269 TIGR01818 ntrC nitrogen regula 98.3 6.7E-06 1.5E-10 97.0 14.0 202 555-792 135-367 (463)
270 PF03215 Rad17: Rad17 cell cyc 98.3 2.5E-05 5.4E-10 92.3 18.5 201 553-793 18-269 (519)
271 PRK15115 response regulator Gl 98.3 1.1E-05 2.4E-10 94.7 15.4 173 591-790 158-365 (444)
272 COG2255 RuvB Holliday junction 98.3 1.2E-06 2.5E-11 92.9 6.1 66 841-914 23-88 (332)
273 TIGR00763 lon ATP-dependent pr 98.3 9.4E-07 2E-11 110.2 6.2 77 844-927 320-405 (775)
274 PF03152 UFD1: Ubiquitin fusio 98.2 1.6E-05 3.5E-10 80.2 13.5 150 13-170 25-175 (176)
275 TIGR00382 clpX endopeptidase C 98.2 1.6E-06 3.5E-11 99.2 6.4 78 845-924 78-163 (413)
276 PTZ00111 DNA replication licen 98.2 1.9E-05 4.1E-10 96.9 15.2 144 588-752 490-655 (915)
277 PRK09862 putative ATP-dependen 98.2 1.3E-05 2.9E-10 94.0 13.3 132 589-744 209-391 (506)
278 PF13401 AAA_22: AAA domain; P 98.1 9E-06 2E-10 78.2 9.2 92 590-695 4-113 (131)
279 PRK09302 circadian clock prote 98.1 9.1E-06 2E-10 97.0 11.1 39 873-911 268-309 (509)
280 PRK08181 transposase; Validate 98.1 5.4E-06 1.2E-10 90.1 8.2 74 590-668 106-180 (269)
281 PRK12377 putative replication 98.1 1.1E-05 2.4E-10 86.6 10.5 72 591-667 102-175 (248)
282 PRK05917 DNA polymerase III su 98.1 2.7E-05 5.8E-10 85.1 13.4 125 590-741 19-154 (290)
283 PF00931 NB-ARC: NB-ARC domain 98.1 2.9E-05 6.2E-10 85.4 13.6 163 589-784 18-202 (287)
284 PRK13406 bchD magnesium chelat 98.1 1.9E-05 4E-10 94.6 12.4 177 591-789 26-227 (584)
285 PRK06835 DNA replication prote 98.1 1.6E-05 3.4E-10 89.0 10.8 72 591-667 184-258 (329)
286 PRK06526 transposase; Provisio 98.1 6.3E-06 1.4E-10 89.0 6.7 74 590-668 98-172 (254)
287 TIGR00635 ruvB Holliday juncti 98.0 4.4E-06 9.5E-11 93.0 5.3 64 842-913 2-65 (305)
288 COG3283 TyrR Transcriptional r 98.0 7.6E-05 1.6E-09 81.3 14.3 203 553-790 203-430 (511)
289 PF14516 AAA_35: AAA-like doma 98.0 0.00021 4.6E-09 80.4 18.7 169 590-778 31-234 (331)
290 PF12774 AAA_6: Hydrolytic ATP 98.0 4.6E-05 9.9E-10 81.1 12.5 133 591-750 33-176 (231)
291 COG3267 ExeA Type II secretory 98.0 0.00028 6E-09 74.4 17.8 178 591-795 52-256 (269)
292 TIGR02237 recomb_radB DNA repa 98.0 2.8E-05 6.1E-10 81.5 10.6 81 586-669 8-111 (209)
293 PRK00080 ruvB Holliday junctio 98.0 8.2E-06 1.8E-10 91.9 6.8 65 841-913 22-86 (328)
294 PRK10365 transcriptional regul 98.0 4.1E-05 8.9E-10 89.7 12.6 196 556-791 141-371 (441)
295 PRK09183 transposase/IS protei 98.0 1.7E-05 3.6E-10 86.2 8.6 75 589-667 101-176 (259)
296 KOG2170 ATPase of the AAA+ sup 98.0 0.00013 2.7E-09 78.3 14.7 194 557-776 85-322 (344)
297 PRK07952 DNA replication prote 98.0 4E-05 8.7E-10 82.1 11.1 72 591-667 100-174 (244)
298 PF01695 IstB_IS21: IstB-like 98.0 1.2E-05 2.5E-10 82.3 6.7 72 590-666 47-119 (178)
299 KOG1970 Checkpoint RAD17-RFC c 98.0 0.00044 9.5E-09 79.5 19.5 171 591-791 111-319 (634)
300 PRK06921 hypothetical protein; 98.0 1.6E-05 3.5E-10 86.5 8.0 72 590-666 117-188 (266)
301 TIGR02640 gas_vesic_GvpN gas v 97.9 5.4E-06 1.2E-10 90.3 3.8 47 878-924 21-73 (262)
302 PRK04195 replication factor C 97.9 9.3E-06 2E-10 96.2 6.0 66 841-915 11-76 (482)
303 KOG0989 Replication factor C, 97.9 9.4E-06 2E-10 87.0 4.6 51 841-904 33-83 (346)
304 COG2256 MGS1 ATPase related to 97.9 9E-06 1.9E-10 90.2 4.3 57 842-911 22-81 (436)
305 PRK14962 DNA polymerase III su 97.9 1.6E-05 3.5E-10 93.2 6.6 52 841-904 11-62 (472)
306 COG1484 DnaC DNA replication p 97.9 4.5E-05 9.7E-10 82.5 9.1 75 589-667 104-179 (254)
307 PRK08939 primosomal protein Dn 97.9 4.3E-05 9.2E-10 84.9 9.1 74 589-667 155-229 (306)
308 PRK07940 DNA polymerase III su 97.8 2E-05 4.3E-10 90.3 5.7 59 841-902 2-60 (394)
309 TIGR01650 PD_CobS cobaltochela 97.8 1.1E-05 2.4E-10 89.1 3.5 46 877-922 63-110 (327)
310 cd01120 RecA-like_NTPases RecA 97.8 6.7E-05 1.4E-09 74.4 8.6 74 593-669 2-99 (165)
311 PRK06851 hypothetical protein; 97.8 0.00026 5.5E-09 80.0 14.0 26 591-616 31-56 (367)
312 PF07728 AAA_5: AAA domain (dy 97.8 2E-05 4.4E-10 76.9 4.5 34 880-913 1-34 (139)
313 PRK07132 DNA polymerase III su 97.8 0.00068 1.5E-08 74.9 16.9 151 591-775 19-177 (299)
314 PRK13765 ATP-dependent proteas 97.8 0.00017 3.7E-09 87.1 13.0 218 553-820 30-397 (637)
315 PF07726 AAA_3: ATPase family 97.7 2.1E-05 4.6E-10 74.9 3.6 36 880-915 1-37 (131)
316 PLN03210 Resistant to P. syrin 97.7 0.00028 6E-09 92.4 15.2 177 553-777 183-389 (1153)
317 COG3284 AcoR Transcriptional a 97.7 0.00012 2.5E-09 86.0 10.3 196 557-790 316-538 (606)
318 PRK14960 DNA polymerase III su 97.7 3.7E-05 8.1E-10 91.5 6.3 52 841-904 12-63 (702)
319 PLN03025 replication factor C 97.7 4.2E-05 9E-10 85.8 6.1 61 841-914 10-75 (319)
320 PRK14955 DNA polymerase III su 97.7 5.2E-05 1.1E-09 87.6 6.6 52 841-904 13-64 (397)
321 smart00763 AAA_PrkA PrkA AAA d 97.7 8.6E-05 1.9E-09 83.1 8.0 60 845-911 52-118 (361)
322 COG1220 HslU ATP-dependent pro 97.7 5E-05 1.1E-09 82.2 5.6 81 846-928 17-102 (444)
323 COG1123 ATPase components of v 97.7 0.00053 1.1E-08 80.2 14.4 31 587-617 32-62 (539)
324 PRK09361 radB DNA repair and r 97.7 0.00025 5.5E-09 75.3 10.9 80 586-669 19-121 (225)
325 PRK05818 DNA polymerase III su 97.7 0.00035 7.6E-09 74.9 11.6 125 589-741 6-147 (261)
326 PRK14961 DNA polymerase III su 97.7 7.1E-05 1.5E-09 85.5 6.7 51 841-903 13-63 (363)
327 PRK13342 recombination factor 97.6 5.6E-05 1.2E-09 87.8 6.0 60 841-913 9-71 (413)
328 PRK10787 DNA-binding ATP-depen 97.6 8.2E-05 1.8E-09 92.4 7.8 75 843-924 321-404 (784)
329 COG0606 Predicted ATPase with 97.6 4.1E-05 9E-10 87.1 4.7 49 550-615 175-223 (490)
330 PHA02244 ATPase-like protein 97.6 0.00016 3.4E-09 81.1 9.1 34 878-911 119-152 (383)
331 PRK07276 DNA polymerase III su 97.6 0.0007 1.5E-08 74.3 13.9 132 589-751 23-172 (290)
332 COG5245 DYN1 Dynein, heavy cha 97.6 6.9E-05 1.5E-09 92.9 6.5 183 586-792 1490-1716(3164)
333 COG1618 Predicted nucleotide k 97.6 0.001 2.3E-08 65.4 13.4 27 591-617 6-32 (179)
334 PHA02544 44 clamp loader, smal 97.6 8.4E-05 1.8E-09 83.1 6.8 61 841-913 18-78 (316)
335 PRK14956 DNA polymerase III su 97.6 6.1E-05 1.3E-09 87.4 5.7 52 841-904 15-66 (484)
336 TIGR02012 tigrfam_recA protein 97.6 0.00039 8.4E-09 77.3 11.9 81 586-669 51-147 (321)
337 COG1219 ClpX ATP-dependent pro 97.6 5.3E-05 1.1E-09 81.5 4.4 78 846-925 63-145 (408)
338 cd00009 AAA The AAA+ (ATPases 97.6 0.0001 2.2E-09 71.2 6.2 44 878-921 19-65 (151)
339 cd01121 Sms Sms (bacterial rad 97.6 0.00069 1.5E-08 77.2 13.5 81 586-669 78-172 (372)
340 PRK12402 replication factor C 97.6 8.6E-05 1.9E-09 83.6 6.2 62 841-915 12-78 (337)
341 KOG0742 AAA+-type ATPase [Post 97.6 6.5E-05 1.4E-09 82.9 4.4 36 879-914 385-420 (630)
342 COG1241 MCM2 Predicted ATPase 97.5 0.00015 3.3E-09 87.2 7.6 135 591-749 320-478 (682)
343 PRK14958 DNA polymerase III su 97.5 0.00011 2.3E-09 87.2 6.4 52 841-904 13-64 (509)
344 PF13207 AAA_17: AAA domain; P 97.5 7E-05 1.5E-09 71.1 3.9 31 881-911 2-32 (121)
345 COG0488 Uup ATPase components 97.5 0.0013 2.7E-08 78.2 15.1 31 587-617 26-56 (530)
346 PRK11823 DNA repair protein Ra 97.5 0.00057 1.2E-08 80.0 12.1 81 586-669 76-170 (446)
347 TIGR01618 phage_P_loop phage n 97.5 0.0002 4.3E-09 75.4 7.3 23 590-612 12-34 (220)
348 PF00910 RNA_helicase: RNA hel 97.5 0.00016 3.4E-09 67.6 5.9 24 593-616 1-24 (107)
349 cd00983 recA RecA is a bacter 97.5 0.00066 1.4E-08 75.5 11.7 81 586-669 51-147 (325)
350 TIGR02903 spore_lon_C ATP-depe 97.5 0.0002 4.4E-09 87.0 8.1 61 841-914 151-221 (615)
351 PF01078 Mg_chelatase: Magnesi 97.5 0.00013 2.7E-09 75.6 5.4 46 842-902 1-46 (206)
352 COG4619 ABC-type uncharacteriz 97.5 0.00093 2E-08 66.0 11.0 30 586-615 25-54 (223)
353 COG0466 Lon ATP-dependent Lon 97.5 0.00017 3.8E-09 85.2 7.0 61 843-910 322-382 (782)
354 PF01695 IstB_IS21: IstB-like 97.5 7.1E-05 1.5E-09 76.6 3.4 42 877-918 46-90 (178)
355 PRK10636 putative ABC transpor 97.5 0.0017 3.7E-08 79.7 15.9 30 587-616 24-53 (638)
356 KOG2004 Mitochondrial ATP-depe 97.5 0.00015 3.2E-09 85.4 6.1 63 841-910 408-470 (906)
357 PRK14964 DNA polymerase III su 97.5 0.00017 3.7E-09 84.5 6.7 50 841-902 10-59 (491)
358 PF03969 AFG1_ATPase: AFG1-lik 97.5 0.00018 3.8E-09 81.6 6.7 30 587-616 59-88 (362)
359 PRK06835 DNA replication prote 97.5 8E-05 1.7E-09 83.4 3.8 64 851-918 160-226 (329)
360 PRK14963 DNA polymerase III su 97.5 0.00011 2.3E-09 87.1 5.0 51 841-903 11-61 (504)
361 cd01394 radB RadB. The archaea 97.5 0.00087 1.9E-08 70.8 11.5 42 586-630 15-56 (218)
362 KOG1968 Replication factor C, 97.5 0.00028 6.1E-09 87.4 8.6 160 593-787 360-531 (871)
363 PRK06645 DNA polymerase III su 97.4 0.00019 4E-09 84.8 6.6 52 841-904 18-69 (507)
364 smart00382 AAA ATPases associa 97.4 0.00014 3.1E-09 69.4 4.7 38 878-915 2-42 (148)
365 PRK14952 DNA polymerase III su 97.4 0.00017 3.7E-09 86.4 6.2 51 841-903 10-60 (584)
366 PRK14949 DNA polymerase III su 97.4 0.00014 2.9E-09 89.4 5.4 52 841-904 13-64 (944)
367 PRK08533 flagellar accessory p 97.4 0.00099 2.1E-08 71.1 11.4 80 586-668 20-130 (230)
368 PRK15439 autoinducer 2 ABC tra 97.4 0.0014 3.1E-08 78.4 14.0 29 587-615 34-62 (510)
369 cd01123 Rad51_DMC1_radA Rad51_ 97.4 0.0011 2.4E-08 70.8 11.6 83 586-668 15-128 (235)
370 PRK12323 DNA polymerase III su 97.4 0.00017 3.8E-09 85.8 5.8 52 841-904 13-64 (700)
371 PRK14954 DNA polymerase III su 97.4 0.00021 4.5E-09 86.3 6.6 52 841-904 13-64 (620)
372 PRK08116 hypothetical protein; 97.4 0.0001 2.2E-09 80.5 3.5 42 878-919 114-158 (268)
373 PRK07994 DNA polymerase III su 97.4 0.00017 3.7E-09 86.9 5.7 52 841-904 13-64 (647)
374 PRK14957 DNA polymerase III su 97.4 0.00022 4.9E-09 84.7 6.5 51 841-903 13-63 (546)
375 KOG0478 DNA replication licens 97.4 0.0013 2.8E-08 77.4 12.3 139 587-753 459-625 (804)
376 PRK08691 DNA polymerase III su 97.4 0.00015 3.3E-09 87.2 5.1 51 841-903 13-63 (709)
377 PRK06305 DNA polymerase III su 97.4 0.00025 5.4E-09 83.1 6.7 50 841-902 14-63 (451)
378 PRK07003 DNA polymerase III su 97.4 0.00021 4.6E-09 86.2 6.1 52 841-904 13-64 (830)
379 KOG3595 Dyneins, heavy chain [ 97.4 0.0011 2.3E-08 87.8 13.1 150 591-756 128-288 (1395)
380 TIGR03420 DnaA_homol_Hda DnaA 97.4 0.00024 5.2E-09 75.3 5.9 58 847-917 20-80 (226)
381 PRK13341 recombination factor 97.4 0.00019 4.2E-09 88.1 5.6 59 841-912 25-86 (725)
382 KOG1942 DNA helicase, TBP-inte 97.4 0.00012 2.5E-09 77.7 3.2 73 845-925 39-113 (456)
383 PF03215 Rad17: Rad17 cell cyc 97.3 0.00021 4.6E-09 84.5 5.6 70 821-913 11-80 (519)
384 cd03216 ABC_Carb_Monos_I This 97.3 0.00091 2E-08 67.4 9.4 77 586-666 22-111 (163)
385 cd01393 recA_like RecA is a b 97.3 0.0017 3.8E-08 68.8 11.9 84 586-669 15-128 (226)
386 PRK09354 recA recombinase A; P 97.3 0.0014 3E-08 73.5 11.5 81 586-669 56-152 (349)
387 cd01131 PilT Pilus retraction 97.3 0.00035 7.6E-09 72.8 6.2 72 591-664 2-83 (198)
388 PRK08181 transposase; Validate 97.3 0.00013 2.9E-09 79.3 3.1 41 878-918 106-149 (269)
389 PLN03073 ABC transporter F fam 97.3 0.0028 6.1E-08 78.4 15.1 27 587-613 200-226 (718)
390 PF06309 Torsin: Torsin; Inte 97.3 0.0019 4.1E-08 61.5 10.2 94 555-656 26-121 (127)
391 TIGR02397 dnaX_nterm DNA polym 97.3 0.00042 9E-09 78.8 7.0 50 841-902 11-60 (355)
392 PRK14965 DNA polymerase III su 97.3 0.00035 7.7E-09 84.3 6.7 51 841-903 13-63 (576)
393 COG1484 DnaC DNA replication p 97.3 0.00017 3.7E-09 78.0 3.6 42 877-918 104-148 (254)
394 PF00493 MCM: MCM2/3/5 family 97.3 0.00042 9E-09 78.1 6.7 136 589-756 56-223 (331)
395 TIGR03877 thermo_KaiC_1 KaiC d 97.3 0.002 4.2E-08 69.2 11.6 29 586-614 17-45 (237)
396 cd01124 KaiC KaiC is a circadi 97.3 0.002 4.4E-08 65.9 11.2 24 593-616 2-25 (187)
397 PRK14969 DNA polymerase III su 97.3 0.00027 5.9E-09 84.3 5.4 52 841-904 13-64 (527)
398 PRK12377 putative replication 97.3 0.00018 3.9E-09 77.4 3.4 41 878-918 101-144 (248)
399 COG1116 TauB ABC-type nitrate/ 97.3 0.0016 3.4E-08 68.9 10.2 29 587-615 26-54 (248)
400 KOG0745 Putative ATP-dependent 97.3 0.00025 5.5E-09 79.1 4.5 45 878-922 226-271 (564)
401 PRK06647 DNA polymerase III su 97.2 0.0004 8.6E-09 83.3 6.4 51 841-903 13-63 (563)
402 PRK06067 flagellar accessory p 97.2 0.0023 5E-08 68.4 11.7 80 586-668 21-133 (234)
403 PRK05563 DNA polymerase III su 97.2 0.00044 9.6E-09 83.1 6.8 51 841-903 13-63 (559)
404 PRK07133 DNA polymerase III su 97.2 0.00029 6.2E-09 85.6 5.1 51 841-903 15-65 (725)
405 cd01128 rho_factor Transcripti 97.2 0.0011 2.4E-08 71.4 9.1 29 589-617 15-43 (249)
406 PRK08939 primosomal protein Dn 97.2 0.00023 4.9E-09 79.1 3.8 43 877-919 155-200 (306)
407 PRK07952 DNA replication prote 97.2 0.00022 4.7E-09 76.5 3.5 41 879-919 100-143 (244)
408 PRK05896 DNA polymerase III su 97.2 0.00035 7.5E-09 83.3 5.4 50 841-902 13-62 (605)
409 PRK06921 hypothetical protein; 97.2 0.00029 6.3E-09 76.8 4.4 53 865-917 104-160 (266)
410 PRK07764 DNA polymerase III su 97.2 0.00043 9.4E-09 86.1 6.3 51 841-903 12-62 (824)
411 PRK00440 rfc replication facto 97.2 0.00053 1.1E-08 76.6 6.4 60 841-913 14-78 (319)
412 PRK14970 DNA polymerase III su 97.2 0.0005 1.1E-08 78.7 6.3 52 841-904 14-65 (367)
413 PF05673 DUF815: Protein of un 97.2 0.00038 8.3E-09 73.6 4.8 67 840-915 23-92 (249)
414 PF13207 AAA_17: AAA domain; P 97.2 0.0003 6.5E-09 66.7 3.8 23 593-615 2-24 (121)
415 KOG2228 Origin recognition com 97.2 0.0029 6.2E-08 69.1 11.2 140 591-755 50-220 (408)
416 PRK13407 bchI magnesium chelat 97.2 0.00036 7.9E-09 78.2 4.6 49 841-902 5-53 (334)
417 PRK00149 dnaA chromosomal repl 97.2 0.00028 6E-09 83.0 3.8 43 879-921 149-196 (450)
418 TIGR00362 DnaA chromosomal rep 97.2 0.00027 5.9E-09 82.0 3.7 44 878-921 136-184 (405)
419 PRK14951 DNA polymerase III su 97.1 0.00042 9.1E-09 83.5 5.3 51 841-903 13-63 (618)
420 PLN03086 PRLI-interacting fact 97.1 0.0082 1.8E-07 70.9 15.7 157 12-174 90-261 (567)
421 TIGR00416 sms DNA repair prote 97.1 0.003 6.6E-08 74.0 12.1 81 586-669 90-184 (454)
422 KOG2543 Origin recognition com 97.1 0.0091 2E-07 66.4 14.7 137 588-752 28-191 (438)
423 PHA00729 NTP-binding motif con 97.1 0.00063 1.4E-08 71.6 5.6 24 592-615 19-42 (226)
424 PRK08903 DnaA regulatory inact 97.1 0.0011 2.3E-08 70.6 7.5 39 877-915 41-82 (227)
425 PHA02624 large T antigen; Prov 97.1 0.0015 3.3E-08 77.0 9.2 128 586-740 427-561 (647)
426 COG0714 MoxR-like ATPases [Gen 97.1 0.00046 1E-08 77.8 4.8 36 877-912 42-77 (329)
427 PRK14959 DNA polymerase III su 97.1 0.00069 1.5E-08 81.2 6.4 52 841-904 13-64 (624)
428 PRK13409 putative ATPase RIL; 97.1 0.0024 5.2E-08 77.5 11.1 220 587-900 96-387 (590)
429 PF06745 KaiC: KaiC; InterPro 97.1 0.0036 7.8E-08 66.5 11.1 79 586-667 15-127 (226)
430 PRK09376 rho transcription ter 97.1 0.0013 2.7E-08 74.4 7.8 27 591-617 170-196 (416)
431 cd03222 ABC_RNaseL_inhibitor T 97.1 0.0025 5.4E-08 65.2 9.4 75 587-666 22-100 (177)
432 KOG1969 DNA replication checkp 97.1 0.00042 9E-09 81.9 3.9 34 880-913 328-361 (877)
433 PF13191 AAA_16: AAA ATPase do 97.1 0.0007 1.5E-08 69.0 5.3 79 557-650 3-81 (185)
434 PF13671 AAA_33: AAA domain; P 97.1 0.00041 8.8E-09 67.8 3.3 36 881-918 2-37 (143)
435 PRK14948 DNA polymerase III su 97.0 0.00067 1.5E-08 82.3 5.8 52 841-904 13-64 (620)
436 COG1373 Predicted ATPase (AAA+ 97.0 0.0063 1.4E-07 70.3 13.5 121 592-748 39-161 (398)
437 PRK14950 DNA polymerase III su 97.0 0.00064 1.4E-08 82.4 5.5 51 841-903 13-63 (585)
438 PRK07261 topology modulation p 97.0 0.001 2.2E-08 67.7 6.1 23 593-615 3-25 (171)
439 TIGR00764 lon_rel lon-related 97.0 0.00046 1E-08 83.6 4.2 73 841-928 15-97 (608)
440 PLN03187 meiotic recombination 97.0 0.0068 1.5E-07 68.3 13.2 84 586-669 122-235 (344)
441 PRK14953 DNA polymerase III su 97.0 0.00066 1.4E-08 80.2 5.4 51 841-903 13-63 (486)
442 COG0606 Predicted ATPase with 97.0 0.00041 8.9E-09 79.2 3.4 47 841-902 176-222 (490)
443 KOG2028 ATPase related to the 97.0 0.00072 1.6E-08 74.0 5.1 33 880-912 164-199 (554)
444 PRK06526 transposase; Provisio 97.0 0.00025 5.3E-09 76.7 1.6 41 878-918 98-141 (254)
445 PRK06620 hypothetical protein; 97.0 0.00041 8.9E-09 73.2 3.2 30 879-908 45-74 (214)
446 TIGR02902 spore_lonB ATP-depen 97.0 0.00082 1.8E-08 80.4 5.9 59 841-912 62-130 (531)
447 PRK08118 topology modulation p 97.0 0.00097 2.1E-08 67.5 5.6 24 592-615 3-26 (167)
448 TIGR03878 thermo_KaiC_2 KaiC d 97.0 0.0047 1E-07 67.2 11.3 30 586-615 32-61 (259)
449 PF05707 Zot: Zonular occluden 97.0 0.0014 3.1E-08 68.0 6.8 67 655-740 79-145 (193)
450 PF07693 KAP_NTPase: KAP famil 97.0 0.028 6.1E-07 62.9 17.8 30 588-617 18-47 (325)
451 TIGR02238 recomb_DMC1 meiotic 97.0 0.0064 1.4E-07 67.9 12.3 84 586-669 92-205 (313)
452 COG4608 AppF ABC-type oligopep 97.0 0.005 1.1E-07 66.0 10.9 96 587-696 36-158 (268)
453 cd02020 CMPK Cytidine monophos 97.0 0.00061 1.3E-08 66.7 3.8 30 881-910 2-31 (147)
454 PRK09183 transposase/IS protei 97.0 0.00051 1.1E-08 74.6 3.5 42 877-918 101-145 (259)
455 PF04665 Pox_A32: Poxvirus A32 97.0 0.0049 1.1E-07 65.7 10.7 135 587-752 10-168 (241)
456 TIGR01420 pilT_fam pilus retra 97.0 0.00093 2E-08 75.7 5.6 74 590-665 122-205 (343)
457 PRK09111 DNA polymerase III su 97.0 0.00086 1.9E-08 80.9 5.6 52 841-904 21-72 (598)
458 PRK06893 DNA replication initi 97.0 0.00045 9.7E-09 73.7 2.8 23 880-902 41-63 (229)
459 PRK04328 hypothetical protein; 97.0 0.0059 1.3E-07 66.0 11.5 28 586-613 19-46 (249)
460 cd03283 ABC_MutS-like MutS-lik 97.0 0.0044 9.5E-08 64.7 10.1 77 588-665 23-115 (199)
461 PRK14971 DNA polymerase III su 96.9 0.00096 2.1E-08 80.9 5.9 51 841-903 14-64 (614)
462 PF00158 Sigma54_activat: Sigm 96.9 0.0014 3E-08 66.4 6.2 36 879-914 23-61 (168)
463 COG4650 RtcR Sigma54-dependent 96.9 0.00065 1.4E-08 72.1 3.7 79 590-668 208-295 (531)
464 PRK04301 radA DNA repair and r 96.9 0.0078 1.7E-07 67.5 12.4 46 586-631 98-146 (317)
465 COG1066 Sms Predicted ATP-depe 96.9 0.012 2.7E-07 66.1 13.5 104 587-695 90-207 (456)
466 PTZ00035 Rad51 protein; Provis 96.9 0.0097 2.1E-07 67.2 13.0 84 586-669 114-227 (337)
467 PRK14088 dnaA chromosomal repl 96.9 0.00048 1E-08 80.6 2.7 41 880-920 132-177 (440)
468 PRK13948 shikimate kinase; Pro 96.9 0.001 2.2E-08 68.3 4.6 34 877-910 9-42 (182)
469 PRK08451 DNA polymerase III su 96.9 0.001 2.2E-08 78.8 5.3 50 841-902 11-60 (535)
470 cd03230 ABC_DR_subfamily_A Thi 96.9 0.006 1.3E-07 62.0 10.2 29 587-615 23-51 (173)
471 cd01122 GP4d_helicase GP4d_hel 96.9 0.0061 1.3E-07 66.6 11.0 30 586-615 26-55 (271)
472 cd01129 PulE-GspE PulE/GspE Th 96.9 0.0022 4.9E-08 69.8 7.4 73 591-666 81-160 (264)
473 PRK04841 transcriptional regul 96.9 0.011 2.5E-07 75.7 15.1 154 591-778 33-220 (903)
474 cd00984 DnaB_C DnaB helicase C 96.9 0.0086 1.9E-07 64.1 11.9 42 586-629 9-50 (242)
475 COG4178 ABC-type uncharacteriz 96.9 0.0037 8E-08 74.3 9.5 33 585-617 414-446 (604)
476 PRK15455 PrkA family serine pr 96.9 0.0012 2.6E-08 77.6 5.3 56 553-617 75-130 (644)
477 KOG1808 AAA ATPase containing 96.8 0.0018 3.9E-08 84.7 7.3 141 591-751 441-596 (1856)
478 cd03228 ABCC_MRP_Like The MRP 96.8 0.0027 5.8E-08 64.5 7.3 31 586-616 24-54 (171)
479 PRK05973 replicative DNA helic 96.8 0.017 3.7E-07 61.7 13.6 31 586-616 60-90 (237)
480 PF00910 RNA_helicase: RNA hel 96.8 0.00081 1.8E-08 62.8 3.2 41 881-921 1-50 (107)
481 KOG3347 Predicted nucleotide k 96.8 0.00068 1.5E-08 65.6 2.6 35 591-633 8-42 (176)
482 cd03246 ABCC_Protease_Secretio 96.8 0.0074 1.6E-07 61.3 10.4 29 587-615 25-53 (173)
483 PRK14974 cell division protein 96.8 0.014 3.1E-07 65.5 13.4 39 590-631 140-178 (336)
484 cd00267 ABC_ATPase ABC (ATP-bi 96.8 0.0052 1.1E-07 61.3 9.1 74 587-667 22-110 (157)
485 PHA00729 NTP-binding motif con 96.8 0.00081 1.7E-08 70.8 3.3 24 880-903 19-42 (226)
486 PRK00131 aroK shikimate kinase 96.8 0.0011 2.4E-08 66.9 4.2 27 589-615 3-29 (175)
487 COG1125 OpuBA ABC-type proline 96.8 0.0098 2.1E-07 62.9 11.1 30 587-616 24-53 (309)
488 PF00437 T2SE: Type II/IV secr 96.8 0.0018 3.9E-08 70.8 5.9 74 590-666 127-208 (270)
489 PRK10536 hypothetical protein; 96.8 0.0061 1.3E-07 65.4 9.6 23 591-613 75-97 (262)
490 cd02021 GntK Gluconate kinase 96.8 0.0011 2.3E-08 65.6 3.8 29 881-909 2-30 (150)
491 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.8 0.0057 1.2E-07 60.3 8.8 73 586-666 22-99 (144)
492 KOG0480 DNA replication licens 96.8 0.01 2.3E-07 69.5 12.0 177 553-756 344-544 (764)
493 PHA02624 large T antigen; Prov 96.8 0.0022 4.9E-08 75.7 6.7 39 875-913 428-466 (647)
494 COG1485 Predicted ATPase [Gene 96.8 0.0048 1E-07 68.2 8.7 31 587-617 62-92 (367)
495 PRK13531 regulatory ATPase Rav 96.8 0.0019 4.1E-08 75.1 5.9 28 877-904 38-65 (498)
496 cd03238 ABC_UvrA The excision 96.7 0.0075 1.6E-07 61.6 9.7 27 586-612 17-43 (176)
497 PRK13946 shikimate kinase; Pro 96.7 0.0013 2.7E-08 67.8 4.0 34 877-910 9-42 (184)
498 PF13671 AAA_33: AAA domain; P 96.7 0.0018 4E-08 63.1 5.0 23 593-615 2-24 (143)
499 PRK00771 signal recognition pa 96.7 0.019 4.2E-07 66.8 14.2 65 561-631 69-133 (437)
500 PRK12422 chromosomal replicati 96.7 0.00077 1.7E-08 78.8 2.7 41 879-919 142-185 (445)
No 1
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-105 Score=900.91 Aligned_cols=743 Identities=33% Similarity=0.470 Sum_probs=538.8
Q ss_pred CeEEEEEeCCccccceeCCHHHHHHHhhccccCCCCceEEEEEEeCCCC--eEEEEecCCcCCCCeeeecHhHHhhcCCC
Q 002386 1 MELEVRVVGGVENCFVSLPLKLIETLESTRSAHLLPQVLSLELRSRSNQ--RWVVAWSGATSSSSFIEVARQFAECISLA 78 (929)
Q Consensus 1 m~~~v~~~~~~~~~~v~lp~~l~~~l~~~~~~~~~~q~~~~e~~~~~~~--~~~~gw~g~~s~~~~iei~~~~a~~~gl~ 78 (929)
|++.|++.+ +|+||||||..++..+... .|+.+|+..|.+.. .+++-|.|..++.+.||||+++|+.|||.
T Consensus 3 ~a~vV~~~~-~r~cfv~lP~ql~~ai~~~------~~~~av~~v~~~~~~~~s~~~g~~s~~se~~ieIn~~~A~~l~L~ 75 (952)
T KOG0735|consen 3 MACVVNYKS-LRSCFVNLPEQLLEAISEP------VQNYAVQAVVSKNPIKKSWVFGHGSGSSENVIEINRVYAHTLGLA 75 (952)
T ss_pred ceEEEEeee-chhhhhccHHHHHHHHhcc------ccCceeEEEEcCCChhheeecccCCCCccceEEeehhhHhhccCC
Confidence 678899988 9999999999999999863 45688999887643 23333455555668999999999999999
Q ss_pred CCCEEEEEEeecCccceeEEEecCCcchhHHHHhcHHHHHHHHhcccceecCCCeEeEEecCceEEEEEEeccCCCCCeE
Q 002386 79 DHTIVQVRVVSNVLKATLVTIEPLTEDDWEVLELNSEHAEAAILNQVRIVHEAMRFPLWLHGRTIITFHVVSTFPKKPVV 158 (929)
Q Consensus 79 ~~~~v~~~~~~~~~~~~~v~veP~t~dDWEi~el~a~~le~~lL~Q~r~v~~~~~~~~~~~~~~~~~~~v~~~~p~~~~~ 158 (929)
+|+.|.++++.+++.|++|+|||+|+|||||||+||+.+|.+||+|+|||++ ++||+|++++|+|+|+|+++.|++.||
T Consensus 76 e~~~V~l~~~~~v~~~~~V~VeP~TsdDWEIiElnA~~~e~~lL~Q~RIv~~-~~f~iwl~~~t~i~fqv~rl~Ps~~~g 154 (952)
T KOG0735|consen 76 ENQEVKLSIIDHVHEATQVEVEPVTSDDWEIIELNAEWLEENLLVQTRIVTP-EIFIIWLPSGTVIQFQVDRLIPSMLYG 154 (952)
T ss_pred CCCeEEEEEcCCccceeEEEEeeccCccHHHHHhhHHHHhhhhhhheeeccc-ceeEEEEcCccEEEEEEeeeeccccee
Confidence 9999999999999999999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred EecCCCeEEEcccCCCCCCcccccchhhccCCccccccceeeeccCCCCcccccccCCceeeeeccceEEeCCCcccccc
Q 002386 159 QLVPGTEVAVAPKRRKNNVKKHEDSYMQAFNESTSIAKALLRVQDSDEGLSHKCNVKGVELGVALTSVAFINPETAENVS 238 (929)
Q Consensus 159 ~l~~~tev~vaPk~r~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 238 (929)
||.++|||+||||+|+...+.+++.....+... +..+|.- .....++|..+.....++||| +++...+
T Consensus 155 Rl~~~Tev~VaPK~~k~~l~~~~~g~~e~n~lk----s~~lr~~------~lrs~v~~~~~p~~n~s~vyi--~~aql~t 222 (952)
T KOG0735|consen 155 RLLRGTEVLVAPKPNKSALNVKENGVIEENTLK----SRSLRKV------QLRSVVEGRLLPDSNSSTVYI--NTAQLVT 222 (952)
T ss_pred eecCCceEEEecCcccchhhhhcccchhhhhhh----hhhhhhh------hhhhheecccccCcccceeee--cccccee
Confidence 999999999999999988654332222211111 0112211 234457788888878889998 3332222
Q ss_pred ccceeEEEeccCCCCCCCCCCCCCcccCCcccccccc-CCCcccccccceeEEEEEeecccccCceeecHHHHHHhcccc
Q 002386 239 LCSLELVAILPRLSSKENNPENNAPRIKSNLTSKEIS-GGASTDKKECRQAVVHLLFSDSVAKGHVKIARALRLYLNAGL 317 (929)
Q Consensus 239 ~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~l~~~~ 317 (929)
.+....+++...++. .+ +.+ ..+ .|. ...+-+-..++|...+|..|.+++.++|.++.+.+
T Consensus 223 ---~q~~~~~~k~~Lr~s---sr-----~d~---~~~~~g~----~~Skvv~~~~~c~~q~P~~H~ai~~~l~~~~~tpe 284 (952)
T KOG0735|consen 223 ---AQGPALSVKLPLRQS---SR-----SDE---VYNDGGN----LKSKVVEQDVVCPKQIPEFHFAISKSLWLSYSTPE 284 (952)
T ss_pred ---ccCceeeeeccccCC---cc-----chh---HhhccCc----chhhhhcccccCCCCCCcceeeEehhHHHhhcCCc
Confidence 222233334433321 00 000 001 111 11122233367777889999999999999998420
Q ss_pred cceEEEEeccccccCCCCeeeeccceeeeccccccccccccccccccccccccccccCCccccCCCCcchhhHHhhhcCC
Q 002386 318 HSWVYLKKCTVNLKKEIPMVSLSPCHFKMLEKDKAFGIGLELDNKNHKTKKMLEKTSSGIYMDDGDLSAEDDIIAALSSE 397 (929)
Q Consensus 318 ~~~v~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (929)
+ . + +.+.++ ..|..++.+..+++
T Consensus 285 -----------~-----------d--i-------k~~l~~------------------------~iw~~~n~i~~~~~-- 307 (952)
T KOG0735|consen 285 -----------D-----------D--I-------KTGLKF------------------------VIWNLNNPISSSKF-- 307 (952)
T ss_pred -----------c-----------c--h-------hcCcee------------------------eeeccccchhhhhh--
Confidence 0 0 1 111111 11222211111110
Q ss_pred CCCcchhHHH--H-hhhhhhhHHHHHHHHHHHHhhhhhcccCccccccccCCCceeEEEEeccccCcCCCCCCCccccch
Q 002386 398 PSSKEDEEAV--Y-QFENKKGLECLLHTWLLAQLTAVASNIGSEFNTLVLSNETLLHFEVKGYKSGTYGKVPASCNGALE 474 (929)
Q Consensus 398 ~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (929)
.++.. | .-+.++++. ..|.+. +..+++++.+ ++.+|++....++.....+..++..+.
T Consensus 308 -----i~~l~~vg~p~~tkk~l~--------~eL~A~----~~~ts~li~~--t~k~~~ie~~es~~~l~nq~eV~~~w~ 368 (952)
T KOG0735|consen 308 -----IEELKRVGLPDETKKNLS--------SELVAA----KLKTSYLIDG--TLKLFEIEVLESVSSLSNQEEVVRLWD 368 (952)
T ss_pred -----hHHHHhccCCcccccchh--------Hhhhhh----hhccccccCC--ceEEEEeeccccccccccchHHhhHHH
Confidence 00000 0 001222222 122221 2334566665 778888875332222222223333333
Q ss_pred hhhhhcccccceeeeeccccccccCCCCcchhhhHHhhccCCCchHHHHHHhcccCCCCceeeeeecccCccCCcccccc
Q 002386 475 NKTKARELRTEIFCVLTFSEESLHGGKNNAYELTLEARGQQNNNTEAVRQLFGKLNSGDSVSFYTVKERGSTQGFDSNVS 554 (929)
Q Consensus 475 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~~~~s~~~~~~~~~~~~~~~~~~ 554 (929)
+...-+..+.|..+.-.+..+.+.|.|...+.+. ...++..|
T Consensus 369 q~~vt~~~~~ei~~~~~v~~~~~~g~K~~~~~l~---------------------------------~~~~e~d~----- 410 (952)
T KOG0735|consen 369 QLKVTKMPPLEIKITSDVNLPVLAGIKENSPDLV---------------------------------MSPFEHDF----- 410 (952)
T ss_pred hhccccCCchheeeeeeecchhhhcchhcCcccc---------------------------------cCcCCCce-----
Confidence 2221122233333333333332222221111000 00001111
Q ss_pred ccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEecccccc
Q 002386 555 SLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSL 634 (929)
Q Consensus 555 ~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~~ 634 (929)
.-....+++..+ ..++| +..++++||+||+|||||.|++++++++. ....+|+.+++|+.+.+
T Consensus 411 --i~~~s~kke~~n---~~~sp----------v~~~~~Ill~G~~GsGKT~L~kal~~~~~--k~~~~hv~~v~Cs~l~~ 473 (952)
T KOG0735|consen 411 --IQVPSYKKENAN---QELSP----------VFRHGNILLNGPKGSGKTNLVKALFDYYS--KDLIAHVEIVSCSTLDG 473 (952)
T ss_pred --eecchhhhhhhh---hhccc----------ccccccEEEeCCCCCCHhHHHHHHHHHhc--cccceEEEEEechhccc
Confidence 111112222211 22232 44567899999999999999999999986 33459999999999999
Q ss_pred CchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCCCcEEEEE
Q 002386 635 EKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVA 714 (929)
Q Consensus 635 ~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~VivIa 714 (929)
...+.+.+.+..+|.+|.|++|+|++|||+|.|++ .++.++++......++..++.+.++.+...+. .+.+||
T Consensus 474 ~~~e~iQk~l~~vfse~~~~~PSiIvLDdld~l~~-~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~------~ia~Ia 546 (952)
T KOG0735|consen 474 SSLEKIQKFLNNVFSEALWYAPSIIVLDDLDCLAS-ASSNENGQDGVVSERLAAFLNQVIKIYLKRNR------KIAVIA 546 (952)
T ss_pred hhHHHHHHHHHHHHHHHHhhCCcEEEEcchhhhhc-cCcccCCcchHHHHHHHHHHHHHHHHHHccCc------EEEEEE
Confidence 99999999999999999999999999999999996 44556667777888899999888888775543 489999
Q ss_pred ecCCCCccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhhcccccCHHHHHHHHhhcCCCChhhHHHHHHHHHHHHhh
Q 002386 715 SAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAAVG 794 (929)
Q Consensus 715 ttn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~d~~l~~LA~~teG~s~~DL~~Lv~~A~~~a~~ 794 (929)
+.+....+++.|.++++|+.++.+++|+..+|.+||+..+++....+..++++.++..|+||.+.||..+++||+|.|+.
T Consensus 547 t~qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~~~~~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~l 626 (952)
T KOG0735|consen 547 TGQELQTLNPLLVSPLLFQIVIALPAPAVTRRKEILTTIFSKNLSDITMDDLDFLSVKTEGYLATDLVIFVERAIHEAFL 626 (952)
T ss_pred echhhhhcChhhcCccceEEEEecCCcchhHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCccchhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999876666667777899999999999999999999999984
Q ss_pred ccccCCccccccccccccccccccccccccccccccccccccCCCCCccCCCCCchhhHHHHHHHHhcCCCchhhhhhCC
Q 002386 795 RYLHSDSSFEKHIKPTLVRDDFSQAMHEFLPVAMRDITKTSAEGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAP 874 (929)
Q Consensus 795 r~~~~~~~~~~~~~~~lt~edf~~al~~~~P~slr~v~l~~~~~~~~~w~dIgGL~~vk~~L~e~le~p~k~~~if~~~~ 874 (929)
.... ... ..++.++|.++|++|.|.+||++++.++. +.+|+|||||.++|+.|+|+++||.|||.+|++||
T Consensus 627 eris------~~~-klltke~f~ksL~~F~P~aLR~ik~~k~t--gi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~p 697 (952)
T KOG0735|consen 627 ERIS------NGP-KLLTKELFEKSLKDFVPLALRGIKLVKST--GIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCP 697 (952)
T ss_pred HHhc------cCc-ccchHHHHHHHHHhcChHHhhhccccccC--CCCceecccHHHHHHHHHHHHhccccchHHHhhCC
Confidence 4321 112 37999999999999999999999999997 58999999999999999999999999999999999
Q ss_pred CCCCceeEEecCCCCcHHHHHHHHHHHcCCceEEEecccccccccChhhHHHhh
Q 002386 875 LRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRR 928 (929)
Q Consensus 875 lr~~sGiLLyGpPGtGKT~LA~alA~e~glnfIsVkg~ELl~kyIG~SEq~VRd 928 (929)
+|+++|||||||||||||.||+|+|..|+++||+|||||||+||||+|||+|||
T Consensus 698 lr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyIGaSEq~vR~ 751 (952)
T KOG0735|consen 698 LRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYIGASEQNVRD 751 (952)
T ss_pred cccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHhcccHHHHHH
Confidence 999999999999999999999999999999999999999999999999999997
No 2
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.9e-67 Score=580.12 Aligned_cols=359 Identities=30% Similarity=0.469 Sum_probs=318.7
Q ss_pred cccccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEec
Q 002386 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (929)
Q Consensus 550 ~~~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~ 629 (929)
..+|.++||++..+.++.+.+.. ..+++.|..+|+.||+|||||||||||||+||+++|.+++ .+|+.|+.
T Consensus 186 nv~f~diGG~d~~~~el~~li~~---i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~------vPf~~isA 256 (802)
T KOG0733|consen 186 NVSFSDIGGLDKTLAELCELIIH---IKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELG------VPFLSISA 256 (802)
T ss_pred CcchhhccChHHHHHHHHHHHHH---hcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcC------CceEeecc
Confidence 45789999999999999886544 4568899999999999999999999999999999999999 99999999
Q ss_pred cccccCchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCCCc
Q 002386 630 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (929)
Q Consensus 630 s~L~~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (929)
.++.+...|+.++.++++|++|....|||+||||||.+.+.+.. .+.+..++++.+|+..||++....... .+
T Consensus 257 peivSGvSGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~----aqreMErRiVaQLlt~mD~l~~~~~~g---~~ 329 (802)
T KOG0733|consen 257 PEIVSGVSGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREE----AQREMERRIVAQLLTSMDELSNEKTKG---DP 329 (802)
T ss_pred hhhhcccCcccHHHHHHHHHHHhccCCeEEEeecccccccchhh----HHHHHHHHHHHHHHHhhhcccccccCC---CC
Confidence 99999999999999999999999999999999999999875433 234456799999999999987542211 26
Q ss_pred EEEEEecCCCCccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhhcccccCHHHHHHHHhhcCCCChhhHHHHHHHHH
Q 002386 710 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTV 789 (929)
Q Consensus 710 VivIattn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~d~~l~~LA~~teG~s~~DL~~Lv~~A~ 789 (929)
|+||++||++++||++|+|+|||++.|.+..|+..+|.+||+..+++..+.. +-++..||..|.||.++||..||.+|+
T Consensus 330 VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g-~~d~~qlA~lTPGfVGADL~AL~~~Aa 408 (802)
T KOG0733|consen 330 VLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSG-DFDFKQLAKLTPGFVGADLMALCREAA 408 (802)
T ss_pred eEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCC-CcCHHHHHhcCCCccchhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999988655443 446899999999999999999999999
Q ss_pred HHHhhccccCCc----------c-----cc--c----------------------------------ccccccccccccc
Q 002386 790 HAAVGRYLHSDS----------S-----FE--K----------------------------------HIKPTLVRDDFSQ 818 (929)
Q Consensus 790 ~~a~~r~~~~~~----------~-----~~--~----------------------------------~~~~~lt~edf~~ 818 (929)
..|+.|.+.... . .+ . .....+..+||.+
T Consensus 409 ~vAikR~ld~~~~p~~~~~~~ed~~~~~~~~d~S~i~~~~~~~~~~~ld~v~~~~i~~~~d~~S~E~~~~L~i~~eDF~~ 488 (802)
T KOG0733|consen 409 FVAIKRILDQSSSPLTKVPISEDSSNKDAEEDQSSIKITSNAERPLELDRVVQDAILNNPDPLSKELLEGLSIKFEDFEE 488 (802)
T ss_pred HHHHHHHhhcccCccccCCccccccCCCccchhhhhhcCCcccccccHHHHHHHHHHhCCCCcChHHhccceecHHHHHH
Confidence 999988763111 0 00 0 0112367789999
Q ss_pred ccccccccccccccccccCCCCCccCCCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHH
Q 002386 819 AMHEFLPVAMRDITKTSAEGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAA 898 (929)
Q Consensus 819 al~~~~P~slr~v~l~~~~~~~~~w~dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~al 898 (929)
|+..+.|++.|+.....|+ +.|+|||||+++|.+|...+.||.|||++|...|+..++|+|||||||||||+||+|+
T Consensus 489 Al~~iQPSakREGF~tVPd---VtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAV 565 (802)
T KOG0733|consen 489 ALSKIQPSAKREGFATVPD---VTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAV 565 (802)
T ss_pred HHHhcCcchhcccceecCC---CChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHH
Confidence 9999999999999888886 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCceEEEecccccccccChhhHHHhh
Q 002386 899 AAACSLRFISVKGPELLNKYIGASEQAVRR 928 (929)
Q Consensus 899 A~e~glnfIsVkg~ELl~kyIG~SEq~VRd 928 (929)
|.|.|+|||+|||||||||||||||++||.
T Consensus 566 ANEag~NFisVKGPELlNkYVGESErAVR~ 595 (802)
T KOG0733|consen 566 ANEAGANFISVKGPELLNKYVGESERAVRQ 595 (802)
T ss_pred hhhccCceEeecCHHHHHHHhhhHHHHHHH
Confidence 999999999999999999999999999995
No 3
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-57 Score=515.23 Aligned_cols=334 Identities=31% Similarity=0.501 Sum_probs=306.4
Q ss_pred cccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccccc
Q 002386 554 SSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLS 633 (929)
Q Consensus 554 ~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~ 633 (929)
..++|....+..+.+ .+.++...+..+...+.++|+++|+|||||||||.+++++|++.+ ++++++++.++.
T Consensus 184 ~~~gg~~~~~~~i~e--~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~------a~~~~i~~peli 255 (693)
T KOG0730|consen 184 DDIGGLKRQLSVIRE--LVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYG------AFLFLINGPELI 255 (693)
T ss_pred cccchhHHHHHHHHH--HHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhC------ceeEecccHHHH
Confidence 467788888888877 445566678899999999999999999999999999999999988 899999999999
Q ss_pred cCchhhHHHHHHHHHHHHHhcC-CcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCCCcEEE
Q 002386 634 LEKGPIIRQALSNFISEALDHA-PSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAF 712 (929)
Q Consensus 634 ~~~~~~~~~~l~~~f~~a~~~~-PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~Viv 712 (929)
.+..++.++.++..|++|..++ |+++||||+|.++|++....+ ...++..+|+.+||+..... .+++
T Consensus 256 ~k~~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~-----~e~Rv~sqlltL~dg~~~~~-------~viv 323 (693)
T KOG0730|consen 256 SKFPGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADD-----VESRVVSQLLTLLDGLKPDA-------KVIV 323 (693)
T ss_pred HhcccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccch-----HHHHHHHHHHHHHhhCcCcC-------cEEE
Confidence 9999999999999999999999 999999999999975543322 45689999999999876432 5999
Q ss_pred EEecCCCCccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhhcccccCHHHHHHHHhhcCCCChhhHHHHHHHHHHHH
Q 002386 713 VASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAA 792 (929)
Q Consensus 713 Iattn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~d~~l~~LA~~teG~s~~DL~~Lv~~A~~~a 792 (929)
++++|+++.||++++| |||+..+.+..|+..+|.+|++.+.++.+.. ++..+.++|..|.||.++||..+|..|...+
T Consensus 324 l~atnrp~sld~alRR-gRfd~ev~IgiP~~~~RldIl~~l~k~~~~~-~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~ 401 (693)
T KOG0730|consen 324 LAATNRPDSLDPALRR-GRFDREVEIGIPGSDGRLDILRVLTKKMNLL-SDVDLEDIAVSTHGYVGADLAALCREASLQA 401 (693)
T ss_pred EEecCCccccChhhhc-CCCcceeeecCCCchhHHHHHHHHHHhcCCc-chhhHHHHHHHccchhHHHHHHHHHHHHHHH
Confidence 9999999999999999 9999999999999999999999999887765 6778999999999999999999999998888
Q ss_pred hhccccCCccccccccccccccccccccccccccccccccccccCCCCCccCCCCCchhhHHHHHHHHhcCCCchhhhhh
Q 002386 793 VGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLPVAMRDITKTSAEGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQ 872 (929)
Q Consensus 793 ~~r~~~~~~~~~~~~~~~lt~edf~~al~~~~P~slr~v~l~~~~~~~~~w~dIgGL~~vk~~L~e~le~p~k~~~if~~ 872 (929)
.++ ++++|..|+.+..|+++|......|+ +.|+|||||+++|+.|+++++||.+||+.|.+
T Consensus 402 ~r~----------------~~~~~~~A~~~i~psa~Re~~ve~p~---v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r 462 (693)
T KOG0730|consen 402 TRR----------------TLEIFQEALMGIRPSALREILVEMPN---VSWDDIGGLEELKRELQQAVEWPLKHPEKFAR 462 (693)
T ss_pred hhh----------------hHHHHHHHHhcCCchhhhheeccCCC---CChhhccCHHHHHHHHHHHHhhhhhchHHHHH
Confidence 765 67899999999999999998877765 99999999999999999999999999999999
Q ss_pred CCCCCCceeEEecCCCCcHHHHHHHHHHHcCCceEEEecccccccccChhhHHHhh
Q 002386 873 APLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRR 928 (929)
Q Consensus 873 ~~lr~~sGiLLyGpPGtGKT~LA~alA~e~glnfIsVkg~ELl~kyIG~SEq~VRd 928 (929)
.++.+++|||||||||||||++|+|+|.+|++||++||||||++||+|+||++||+
T Consensus 463 ~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~vGeSEr~ir~ 518 (693)
T KOG0730|consen 463 FGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYVGESERAIRE 518 (693)
T ss_pred hcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhcCchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999997
No 4
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-49 Score=451.39 Aligned_cols=317 Identities=35% Similarity=0.555 Sum_probs=261.1
Q ss_pred CCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccccccCchhhHHHHHHHHHHHHHhcCCcEEEEccccccc
Q 002386 589 LPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSII 668 (929)
Q Consensus 589 ~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~ 668 (929)
....+||+|+||||||++++++|++++ .|+..++|.++.....+..+..+..+|..|+...|+||||-++|.+.
T Consensus 430 ~~~~vLLhG~~g~GK~t~V~~vas~lg------~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~pavifl~~~dvl~ 503 (953)
T KOG0736|consen 430 LNPSVLLHGPPGSGKTTVVRAVASELG------LHLLEVDCYELVAESASHTETKLQAIFSRARRCSPAVLFLRNLDVLG 503 (953)
T ss_pred cceEEEEeCCCCCChHHHHHHHHHHhC------CceEeccHHHHhhcccchhHHHHHHHHHHHhhcCceEEEEeccceee
Confidence 345699999999999999999999999 99999999999999999999999999999999999999999999987
Q ss_pred cCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCCCcEEEEEecCCCCccccccccCCCcceEeeCCCCcHHHHHH
Q 002386 669 SSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKA 748 (929)
Q Consensus 669 ~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~VivIattn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~ 748 (929)
. +.++.. ..++...+...+..-. ......+++||+++++.+.+++.+++ .|.+.|.++.|+.+||.+
T Consensus 504 i---d~dgge----d~rl~~~i~~~ls~e~----~~~~~~~~ivv~t~~s~~~lp~~i~~--~f~~ei~~~~lse~qRl~ 570 (953)
T KOG0736|consen 504 I---DQDGGE----DARLLKVIRHLLSNED----FKFSCPPVIVVATTSSIEDLPADIQS--LFLHEIEVPALSEEQRLE 570 (953)
T ss_pred e---cCCCch----hHHHHHHHHHHHhccc----ccCCCCceEEEEeccccccCCHHHHH--hhhhhccCCCCCHHHHHH
Confidence 3 222221 2345555544444100 01223479999999999999999999 777889999999999999
Q ss_pred HHHHHHhhcccccCHHHHHHHHhhcCCCChhhHHHHHHHHHHHHhhccccCC---------ccccccccccccccccccc
Q 002386 749 ILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAAVGRYLHSD---------SSFEKHIKPTLVRDDFSQA 819 (929)
Q Consensus 749 IL~~~l~~~~~~~~d~~l~~LA~~teG~s~~DL~~Lv~~A~~~a~~r~~~~~---------~~~~~~~~~~lt~edf~~a 819 (929)
||+.++....+. .+..+..+|.+|.||+.+|+..++..+...+..+..... ...-......++++||.++
T Consensus 571 iLq~y~~~~~~n-~~v~~k~~a~~t~gfs~~~L~~l~~~~s~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~l~~edf~ka 649 (953)
T KOG0736|consen 571 ILQWYLNHLPLN-QDVNLKQLARKTSGFSFGDLEALVAHSSLAAKTRIKNKGLAGGLQEEDEGELCAAGFLLTEEDFDKA 649 (953)
T ss_pred HHHHHHhccccc-hHHHHHHHHHhcCCCCHHHHHHHhcCchHHHHHHHHhhcccccchhccccccccccceecHHHHHHH
Confidence 999998764432 344578999999999999999998887544444332110 0001112267899999999
Q ss_pred cccccccccccccccccCCCCCccCCCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHH
Q 002386 820 MHEFLPVAMRDITKTSAEGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAA 899 (929)
Q Consensus 820 l~~~~P~slr~v~l~~~~~~~~~w~dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA 899 (929)
+.+..... ....+.|+.+++.|+|||||+++|..+.+++++|++||++|.. ++|.|+|||||||||||||++|+|+|
T Consensus 650 ls~~~~~f--s~aiGAPKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfss-glrkRSGILLYGPPGTGKTLlAKAVA 726 (953)
T KOG0736|consen 650 LSRLQKEF--SDAIGAPKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSS-GLRKRSGILLYGPPGTGKTLLAKAVA 726 (953)
T ss_pred HHHHHHhh--hhhcCCCCCCccchhcccCHHHHHHHHHHHhcCcccChhhhhc-cccccceeEEECCCCCchHHHHHHHH
Confidence 88654432 3356788889999999999999999999999999999999996 89999999999999999999999999
Q ss_pred HHcCCceEEEecccccccccChhhHHHhh
Q 002386 900 AACSLRFISVKGPELLNKYIGASEQAVRR 928 (929)
Q Consensus 900 ~e~glnfIsVkg~ELl~kyIG~SEq~VRd 928 (929)
.||.++|+|||||||||+|||+||+|||+
T Consensus 727 TEcsL~FlSVKGPELLNMYVGqSE~NVR~ 755 (953)
T KOG0736|consen 727 TECSLNFLSVKGPELLNMYVGQSEENVRE 755 (953)
T ss_pred hhceeeEEeecCHHHHHHHhcchHHHHHH
Confidence 99999999999999999999999999997
No 5
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=1.4e-46 Score=461.60 Aligned_cols=356 Identities=28% Similarity=0.478 Sum_probs=305.8
Q ss_pred cccccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEec
Q 002386 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (929)
Q Consensus 550 ~~~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~ 629 (929)
..++++++|++..++.+.+.+. ++..+++++..+++.+++++|||||||||||++|+++|++++ .+++.+++
T Consensus 174 ~~~~~di~G~~~~~~~l~~~i~--~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~------~~~i~i~~ 245 (733)
T TIGR01243 174 KVTYEDIGGLKEAKEKIREMVE--LPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAG------AYFISING 245 (733)
T ss_pred CCCHHHhcCHHHHHHHHHHHHH--HHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhC------CeEEEEec
Confidence 3567889999999999988664 344678899999999999999999999999999999999987 77899999
Q ss_pred cccccCchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCCCc
Q 002386 630 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (929)
Q Consensus 630 s~L~~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (929)
.++.+.+.+...+.++.+|+.+....|+||||||+|.+++.+.... .....++...|...|+++... +.
T Consensus 246 ~~i~~~~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~----~~~~~~~~~~Ll~~ld~l~~~-------~~ 314 (733)
T TIGR01243 246 PEIMSKYYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVT----GEVEKRVVAQLLTLMDGLKGR-------GR 314 (733)
T ss_pred HHHhcccccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCc----chHHHHHHHHHHHHhhccccC-------CC
Confidence 9998888888889999999999999999999999999986433221 123346778888888876543 25
Q ss_pred EEEEEecCCCCccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhhcccccCHHHHHHHHhhcCCCChhhHHHHHHHHH
Q 002386 710 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTV 789 (929)
Q Consensus 710 VivIattn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~d~~l~~LA~~teG~s~~DL~~Lv~~A~ 789 (929)
+++|+++|.++.+|+++++++||+..+.++.|+.++|.+||+.+.....+ ..+..+..++..|+||+++|+..+++.|.
T Consensus 315 vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l-~~d~~l~~la~~t~G~~gadl~~l~~~a~ 393 (733)
T TIGR01243 315 VIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPL-AEDVDLDKLAEVTHGFVGADLAALAKEAA 393 (733)
T ss_pred EEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCC-ccccCHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999977654332 23445889999999999999999999999
Q ss_pred HHHhhccccCCc-c-----c--cccccccccccccccccccccccccccccccccCCCCCccCCCCCchhhHHHHHHHHh
Q 002386 790 HAAVGRYLHSDS-S-----F--EKHIKPTLVRDDFSQAMHEFLPVAMRDITKTSAEGGRSGWDDVGGLTDIQNAIKEMIE 861 (929)
Q Consensus 790 ~~a~~r~~~~~~-~-----~--~~~~~~~lt~edf~~al~~~~P~slr~v~l~~~~~~~~~w~dIgGL~~vk~~L~e~le 861 (929)
+.++.|...... . . .......++.+||..++....|+.++......+ .+.|+|+||++++|+.|.+.+.
T Consensus 394 ~~al~r~~~~~~~~~~~~~i~~~~~~~~~v~~~df~~Al~~v~ps~~~~~~~~~~---~~~~~di~g~~~~k~~l~~~v~ 470 (733)
T TIGR01243 394 MAALRRFIREGKINFEAEEIPAEVLKELKVTMKDFMEALKMVEPSAIREVLVEVP---NVRWSDIGGLEEVKQELREAVE 470 (733)
T ss_pred HHHHHHHhhccccccccccccchhcccccccHHHHHHHHhhccccccchhhcccc---ccchhhcccHHHHHHHHHHHHH
Confidence 999887642110 0 0 011234578899999999999999887766655 4899999999999999999999
Q ss_pred cCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHcCCceEEEecccccccccChhhHHHhh
Q 002386 862 LPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRR 928 (929)
Q Consensus 862 ~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~glnfIsVkg~ELl~kyIG~SEq~VRd 928 (929)
||.+|++.|.+++++++.|+|||||||||||++|+++|++++.+|++++++|++++|+|+||+++|+
T Consensus 471 ~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~vGese~~i~~ 537 (733)
T TIGR01243 471 WPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVGESEKAIRE 537 (733)
T ss_pred hhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhcccCcHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999985
No 6
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-39 Score=345.74 Aligned_cols=249 Identities=23% Similarity=0.336 Sum_probs=220.6
Q ss_pred CccccccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEE
Q 002386 548 GFDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFV 627 (929)
Q Consensus 548 ~~~~~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V 627 (929)
..+.++.++||++.++++|.+ .+.++..+|++|..+|+.||+|||||||||||||+||||+|.+.. +.|+.+
T Consensus 145 ~PdvtY~dIGGL~~Qi~EirE--~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~------AtFIrv 216 (406)
T COG1222 145 KPDVTYEDIGGLDEQIQEIRE--VVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTD------ATFIRV 216 (406)
T ss_pred CCCCChhhccCHHHHHHHHHH--HhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccC------ceEEEe
Confidence 346678899999999999999 567888999999999999999999999999999999999999987 899999
Q ss_pred eccccccCchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCC
Q 002386 628 CCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGI 707 (929)
Q Consensus 628 ~~s~L~~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~ 707 (929)
..++|..++.|+..+.++++|..|+.++||||||||+|.+.+.+.+...+...+ .++..-.|++.||+|...
T Consensus 217 vgSElVqKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrE-VQRTmleLL~qlDGFD~~------- 288 (406)
T COG1222 217 VGSELVQKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDRE-VQRTMLELLNQLDGFDPR------- 288 (406)
T ss_pred ccHHHHHHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHH-HHHHHHHHHHhccCCCCC-------
Confidence 999999999999999999999999999999999999999998777666554444 445555677888888754
Q ss_pred CcEEEEEecCCCCccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhhcccccCHHHHHHHHhhcCCCChhhHHHHHHH
Q 002386 708 GPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDR 787 (929)
Q Consensus 708 ~~VivIattn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~d~~l~~LA~~teG~s~~DL~~Lv~~ 787 (929)
++|-||++||+++.|||+|+|||||++.|+||.||.+.|.+||+.+.++..+. ++.+++.||..|+|++++||+++|..
T Consensus 289 ~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~-~dvd~e~la~~~~g~sGAdlkaictE 367 (406)
T COG1222 289 GNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLA-DDVDLELLARLTEGFSGADLKAICTE 367 (406)
T ss_pred CCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCc-cCcCHHHHHHhcCCCchHHHHHHHHH
Confidence 36999999999999999999999999999999999999999999888764432 34569999999999999999999999
Q ss_pred HHHHHhhccccCCcccccccccccccccccccccccc
Q 002386 788 TVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFL 824 (929)
Q Consensus 788 A~~~a~~r~~~~~~~~~~~~~~~lt~edf~~al~~~~ 824 (929)
|.+.|+++ .+..++++||.+|.+...
T Consensus 368 AGm~AiR~-----------~R~~Vt~~DF~~Av~KV~ 393 (406)
T COG1222 368 AGMFAIRE-----------RRDEVTMEDFLKAVEKVV 393 (406)
T ss_pred HhHHHHHh-----------ccCeecHHHHHHHHHHHH
Confidence 99999987 346799999999877643
No 7
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.6e-36 Score=328.50 Aligned_cols=349 Identities=21% Similarity=0.311 Sum_probs=269.1
Q ss_pred CCccccccccccchhHHHHHHHHHH--HhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeE
Q 002386 547 QGFDSNVSSLSWMGTTASDVINRIK--VLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHI 624 (929)
Q Consensus 547 ~~~~~~~~~l~g~~~~~~~i~~~l~--~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~ 624 (929)
.+|+..-..++|++....+|.++-- .+.+ |++..++|++--+|+|||||||||||.+||.|.+.|+.+..
T Consensus 214 Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFp---p~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNAreP----- 285 (744)
T KOG0741|consen 214 PDFNFESMGIGGLDKEFSDIFRRAFASRVFP---PEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREP----- 285 (744)
T ss_pred CCCChhhcccccchHHHHHHHHHHHHhhcCC---HHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCC-----
Confidence 3556666788999999999988652 4444 56888999999999999999999999999999999987543
Q ss_pred EEEeccccccCchhhHHHHHHHHHHHHHhcC--------CcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHH
Q 002386 625 VFVCCSRLSLEKGPIIRQALSNFISEALDHA--------PSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDE 696 (929)
Q Consensus 625 ~~V~~s~L~~~~~~~~~~~l~~~f~~a~~~~--------PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~ 696 (929)
..|+..++..+++|+.+..++.+|..|..-. =.||++||+|.+|.+++...+ +......+.++|+..||+
T Consensus 286 KIVNGPeIL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g--~TGVhD~VVNQLLsKmDG 363 (744)
T KOG0741|consen 286 KIVNGPEILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAG--STGVHDTVVNQLLSKMDG 363 (744)
T ss_pred cccCcHHHHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCC--CCCccHHHHHHHHHhccc
Confidence 4578889999999999999999999885421 139999999999986665544 223446899999999998
Q ss_pred hcccccCccCCCcEEEEEecCCCCccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhhc---ccccCHHHHHHHHhhc
Q 002386 697 YGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRR---SLECSDEILLDVASKC 773 (929)
Q Consensus 697 ~~~~~~~~~~~~~VivIattn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~---~~~~~d~~l~~LA~~t 773 (929)
..+-. +|++|+.||+.+.+|.+|+|||||..++++..||...|.+||+.+.++. +.--++.++.+||.+|
T Consensus 364 VeqLN-------NILVIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lT 436 (744)
T KOG0741|consen 364 VEQLN-------NILVIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALT 436 (744)
T ss_pred HHhhh-------cEEEEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHh
Confidence 76543 6999999999999999999999999999999999999999999877652 2323455699999999
Q ss_pred CCCChhhHHHHHHHHHHHHhhccccCCc----ccccccccccccccccccccccccccccc---ccccccCCCCCccCCC
Q 002386 774 DGYDAYDLEILVDRTVHAAVGRYLHSDS----SFEKHIKPTLVRDDFSQAMHEFLPVAMRD---ITKTSAEGGRSGWDDV 846 (929)
Q Consensus 774 eG~s~~DL~~Lv~~A~~~a~~r~~~~~~----~~~~~~~~~lt~edf~~al~~~~P~slr~---v~l~~~~~~~~~w~dI 846 (929)
..|++++|+.+++.|...|+.|....+. .....++..++++||..|+++.+|+.-.. +...... .-..|..-
T Consensus 437 KNfSGAEleglVksA~S~A~nR~vk~~~~~~~~~~~~e~lkV~r~DFl~aL~dVkPAFG~see~l~~~~~~-Gmi~~g~~ 515 (744)
T KOG0741|consen 437 KNFSGAELEGLVKSAQSFAMNRHVKAGGKVEVDPVAIENLKVTRGDFLNALEDVKPAFGISEEDLERFVMN-GMINWGPP 515 (744)
T ss_pred cCCchhHHHHHHHHHHHHHHHhhhccCcceecCchhhhheeecHHHHHHHHHhcCcccCCCHHHHHHHHhC-Cceeeccc
Confidence 9999999999999999999999874431 11233567799999999999999965221 1111111 11334332
Q ss_pred CCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHcCCceEEEecccccccccChhhHH
Q 002386 847 GGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQA 925 (929)
Q Consensus 847 gGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~glnfIsVkg~ELl~kyIG~SEq~ 925 (929)
+-+.+++- ..|.+...+....+-..+||.||||+|||+||--+|..++.+||.|-.|| ..||-||-+
T Consensus 516 -----v~~il~~G----~llv~qvk~s~~s~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe---~miG~sEsa 582 (744)
T KOG0741|consen 516 -----VTRILDDG----KLLVQQVKNSERSPLVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPE---DMIGLSESA 582 (744)
T ss_pred -----HHHHHhhH----HHHHHHhhccccCcceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChH---HccCccHHH
Confidence 12222221 11222222333344467999999999999999999999999999999998 789999864
No 8
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-35 Score=349.04 Aligned_cols=322 Identities=30% Similarity=0.451 Sum_probs=275.5
Q ss_pred CchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccccccCchhhHHHHHHHHHHHHHhcCC
Q 002386 577 DSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAP 656 (929)
Q Consensus 577 ~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~~~~~~~~~~~l~~~f~~a~~~~P 656 (929)
..+..+..++..++.+++++||||+|||++++++|.. . .++..++.......+.+..+..+...|..+....|
T Consensus 5 ~~~~~~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 77 (494)
T COG0464 5 KEPELFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-G------AEFLSINGPEILSKYVGESELRLRELFEEAEKLAP 77 (494)
T ss_pred cCHHHHHHhCCCCCCCceeeCCCCCchhHHHHHHHhc-c------CcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCC
Confidence 3456677888999999999999999999999999998 3 33377788888889999999999999999999999
Q ss_pred cEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCCCcEEEEEecCCCCccccccccCCCcceEe
Q 002386 657 SIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHV 736 (929)
Q Consensus 657 sVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~VivIattn~~~~L~~~L~~~~Rf~~~i 736 (929)
+++++|++|.+++.+.. ........+...+...++... . +.+.+++.++.+..+++++++++||+..+
T Consensus 78 ~ii~~d~~~~~~~~~~~----~~~~~~~~v~~~l~~~~d~~~-~-------~~v~~~~~~~~~~~~~~a~~~~~~~~~~~ 145 (494)
T COG0464 78 SIIFIDEIDALAPKRSS----DQGEVERRVVAQLLALMDGLK-R-------GQVIVIGATNRPDGLDPAKRRPGRFDREI 145 (494)
T ss_pred CeEeechhhhcccCccc----cccchhhHHHHHHHHhccccc-C-------CceEEEeecCCccccChhHhCccccceee
Confidence 99999999999975544 222334577788888888765 1 13788889999999999999999999999
Q ss_pred eCCCCcHHHHHHHHHHHHhhcccccCHHHHHHHHhhcCCCChhhHHHHHHHHHHHHhhccccCCcccccccccccccccc
Q 002386 737 QLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDF 816 (929)
Q Consensus 737 ~l~~Pd~~eR~~IL~~~l~~~~~~~~d~~l~~LA~~teG~s~~DL~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~lt~edf 816 (929)
.+..|+...+.+|+.......... .+.....++..+.||.++|+..++..+...+..+.. ........++.++|
T Consensus 146 ~~~~~~~~~~~ei~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~~-----~~~~~~~~~~~~~~ 219 (494)
T COG0464 146 EVNLPDEAGRLEILQIHTRLMFLG-PPGTGKTLAARTVGKSGADLGALAKEAALRELRRAI-----DLVGEYIGVTEDDF 219 (494)
T ss_pred ecCCCCHHHHHHHHHHHHhcCCCc-ccccHHHHHHhcCCccHHHHHHHHHHHHHHHHHhhh-----ccCcccccccHHHH
Confidence 999999999999988766543222 255688999999999999999999999888887741 00113356888999
Q ss_pred ccccccccccccccccccccCCCCCccCCCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHH
Q 002386 817 SQAMHEFLPVAMRDITKTSAEGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVG 896 (929)
Q Consensus 817 ~~al~~~~P~slr~v~l~~~~~~~~~w~dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~ 896 (929)
.++++.+.|+ +++....+ .+.|.|+|||+++|+.+++.++||++|++.|.+.++++++|+|||||||||||+||+
T Consensus 220 ~~~l~~~~~~--~~~~~~~~---~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAk 294 (494)
T COG0464 220 EEALKKVLPS--RGVLFEDE---DVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAK 294 (494)
T ss_pred HHHHHhcCcc--cccccCCC---CcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHH
Confidence 9999999887 55555555 489999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCceEEEecccccccccChhhHHHhh
Q 002386 897 AAAAACSLRFISVKGPELLNKYIGASEQAVRR 928 (929)
Q Consensus 897 alA~e~glnfIsVkg~ELl~kyIG~SEq~VRd 928 (929)
|+|.+++.+|++|+++++++||+|+||++||+
T Consensus 295 ava~~~~~~fi~v~~~~l~sk~vGesek~ir~ 326 (494)
T COG0464 295 AVALESRSRFISVKGSELLSKWVGESEKNIRE 326 (494)
T ss_pred HHHhhCCCeEEEeeCHHHhccccchHHHHHHH
Confidence 99999999999999999999999999999996
No 9
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.3e-36 Score=341.92 Aligned_cols=248 Identities=20% Similarity=0.303 Sum_probs=220.7
Q ss_pred cccccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEec
Q 002386 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (929)
Q Consensus 550 ~~~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~ 629 (929)
+.++++++|++..+.++.+ .+..+..+++.|.++|+.+|++||||||||||||++||++|.+.+ ..|+.|.+
T Consensus 430 ~v~W~dIGGlE~lK~elq~--~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~------~nFlsvkg 501 (693)
T KOG0730|consen 430 NVSWDDIGGLEELKRELQQ--AVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAG------MNFLSVKG 501 (693)
T ss_pred CCChhhccCHHHHHHHHHH--HHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhc------CCeeeccC
Confidence 5667888888888888877 567788899999999999999999999999999999999999998 89999999
Q ss_pred cccccCchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCCCc
Q 002386 630 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (929)
Q Consensus 630 s~L~~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (929)
.++.++|+|+.++.++++|+.|+..+|+|+||||+|.+...++...+ ....+++++|+..||++.... +
T Consensus 502 pEL~sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~----~v~~RVlsqLLtEmDG~e~~k-------~ 570 (693)
T KOG0730|consen 502 PELFSKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSS----GVTDRVLSQLLTEMDGLEALK-------N 570 (693)
T ss_pred HHHHHHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCcc----chHHHHHHHHHHHcccccccC-------c
Confidence 99999999999999999999999999999999999999976652222 566799999999999987653 5
Q ss_pred EEEEEecCCCCccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhhcccccCHHHHHHHHhhcCCCChhhHHHHHHHHH
Q 002386 710 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTV 789 (929)
Q Consensus 710 VivIattn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~d~~l~~LA~~teG~s~~DL~~Lv~~A~ 789 (929)
|+|||+||+++.||++|+||||||..+++|+||.+.|.+||+.++++..+. ++.+++.||..|+||+++||..+|++|+
T Consensus 571 V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~-~~vdl~~La~~T~g~SGAel~~lCq~A~ 649 (693)
T KOG0730|consen 571 VLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFS-EDVDLEELAQATEGYSGAEIVAVCQEAA 649 (693)
T ss_pred EEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCC-ccccHHHHHHHhccCChHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998865543 2247999999999999999999999999
Q ss_pred HHHhhccccCCcccccccccccccccccccccccccc
Q 002386 790 HAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLPV 826 (929)
Q Consensus 790 ~~a~~r~~~~~~~~~~~~~~~lt~edf~~al~~~~P~ 826 (929)
..|+++.. ....++.++|.++++..+++
T Consensus 650 ~~a~~e~i---------~a~~i~~~hf~~al~~~r~s 677 (693)
T KOG0730|consen 650 LLALRESI---------EATEITWQHFEEALKAVRPS 677 (693)
T ss_pred HHHHHHhc---------ccccccHHHHHHHHHhhccc
Confidence 99998854 23568889999999876663
No 10
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.2e-35 Score=327.34 Aligned_cols=259 Identities=24% Similarity=0.314 Sum_probs=221.5
Q ss_pred cccccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEec
Q 002386 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (929)
Q Consensus 550 ~~~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~ 629 (929)
+.++.++|+++.+..++.. .++.+.+++++|..+|+..|.|||||||||||||.||||+|.+.+ ++|+.|..
T Consensus 507 dVtW~dIGaL~~vR~eL~~--aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag------~NFisVKG 578 (802)
T KOG0733|consen 507 DVTWDDIGALEEVRLELNM--AILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAG------ANFISVKG 578 (802)
T ss_pred CCChhhcccHHHHHHHHHH--HHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhcc------CceEeecC
Confidence 5566777777766666654 567788899999999999999999999999999999999999988 89999999
Q ss_pred cccccCchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCCCc
Q 002386 630 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (929)
Q Consensus 630 s~L~~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (929)
.+|.++|+|+.+..++.+|..|+..+||||||||+|.|++.+++.. +....+++++|+..||++..+. +
T Consensus 579 PELlNkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~----s~~s~RvvNqLLtElDGl~~R~-------g 647 (802)
T KOG0733|consen 579 PELLNKYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEG----SSVSSRVVNQLLTELDGLEERR-------G 647 (802)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCC----chhHHHHHHHHHHHhccccccc-------c
Confidence 9999999999999999999999999999999999999998776654 3455699999999999987654 5
Q ss_pred EEEEEecCCCCccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhhcccccCHH-HHHHHHhhcC--CCChhhHHHHHH
Q 002386 710 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDE-ILLDVASKCD--GYDAYDLEILVD 786 (929)
Q Consensus 710 VivIattn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~d~-~l~~LA~~te--G~s~~DL~~Lv~ 786 (929)
|.|||+||+++-+||+++|||||+..++++.|+.++|.+||+...+.....++++ +++.||..+. ||+++||..||+
T Consensus 648 V~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLvr 727 (802)
T KOG0733|consen 648 VYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALVR 727 (802)
T ss_pred eEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHHHH
Confidence 9999999999999999999999999999999999999999999988655555544 5999999876 999999999999
Q ss_pred HHHHHHhhccccCCc-cccccc----cccccccccccccccccccc
Q 002386 787 RTVHAAVGRYLHSDS-SFEKHI----KPTLVRDDFSQAMHEFLPVA 827 (929)
Q Consensus 787 ~A~~~a~~r~~~~~~-~~~~~~----~~~lt~edf~~al~~~~P~s 827 (929)
.|...|+++.+.... ...+.. ...+++.+|++|++...|+-
T Consensus 728 eAsi~AL~~~~~~~~~~~~~~~~~~~~~~~t~~hF~eA~~~i~pSv 773 (802)
T KOG0733|consen 728 EASILALRESLFEIDSSEDDVTVRSSTIIVTYKHFEEAFQRIRPSV 773 (802)
T ss_pred HHHHHHHHHHHhhccccCcccceeeeeeeecHHHHHHHHHhcCCCc
Confidence 999999987652211 111111 23477789999999988854
No 11
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=9.9e-32 Score=307.31 Aligned_cols=261 Identities=21% Similarity=0.306 Sum_probs=219.0
Q ss_pred cccccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEec
Q 002386 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (929)
Q Consensus 550 ~~~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~ 629 (929)
+.+++++||+++++.+|.+ .+-++..++++|.. |+..+.|||||||||||||.+|||+|-++. ..|..|..
T Consensus 668 nV~WdDVGGLeevK~eIld--TIqlPL~hpeLfss-glrkRSGILLYGPPGTGKTLlAKAVATEcs------L~FlSVKG 738 (953)
T KOG0736|consen 668 NVSWDDVGGLEEVKTEILD--TIQLPLKHPELFSS-GLRKRSGILLYGPPGTGKTLLAKAVATECS------LNFLSVKG 738 (953)
T ss_pred ccchhcccCHHHHHHHHHH--HhcCcccChhhhhc-cccccceeEEECCCCCchHHHHHHHHhhce------eeEEeecC
Confidence 6678899999999999999 44667788888876 466667899999999999999999999998 88999999
Q ss_pred cccccCchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCCCc
Q 002386 630 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (929)
Q Consensus 630 s~L~~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (929)
.+|.+.++|+.++.++++|++|+..+|||||+||+|+++|.|+.... +.....++..+|+..||++..... ..
T Consensus 739 PELLNMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGD--SGGVMDRVVSQLLAELDgls~~~s-----~~ 811 (953)
T KOG0736|consen 739 PELLNMYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGD--SGGVMDRVVSQLLAELDGLSDSSS-----QD 811 (953)
T ss_pred HHHHHHHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCC--ccccHHHHHHHHHHHhhcccCCCC-----Cc
Confidence 99999999999999999999999999999999999999986655443 334668999999999999885322 26
Q ss_pred EEEEEecCCCCccccccccCCCcceEeeCCCCcH-HHHHHHHHHHHhhcccccCHHHHHHHHhhc-CCCChhhHHHHHHH
Q 002386 710 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAA-SERKAILEHEIQRRSLECSDEILLDVASKC-DGYDAYDLEILVDR 787 (929)
Q Consensus 710 VivIattn~~~~L~~~L~~~~Rf~~~i~l~~Pd~-~eR~~IL~~~l~~~~~~~~d~~l~~LA~~t-eG~s~~DL~~Lv~~ 787 (929)
|+||++||+|+.|||+|+||||||+-+++.+++. +.+..||+...++..++ .+..+..+|+.| ..|+++|+-.+|..
T Consensus 812 VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLd-edVdL~eiAk~cp~~~TGADlYsLCSd 890 (953)
T KOG0736|consen 812 VFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLD-EDVDLVEIAKKCPPNMTGADLYSLCSD 890 (953)
T ss_pred eEEEecCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCC-CCcCHHHHHhhCCcCCchhHHHHHHHH
Confidence 9999999999999999999999999999998854 66889999887765543 233488899988 57999999999999
Q ss_pred HHHHHhhccccCCc------cccccccccccccccccccccccccc
Q 002386 788 TVHAAVGRYLHSDS------SFEKHIKPTLVRDDFSQAMHEFLPVA 827 (929)
Q Consensus 788 A~~~a~~r~~~~~~------~~~~~~~~~lt~edf~~al~~~~P~s 827 (929)
|...|+.|....-. .........++++||.++++.++|+-
T Consensus 891 A~l~AikR~i~~ie~g~~~~~e~~~~~v~V~~eDflks~~~l~PSv 936 (953)
T KOG0736|consen 891 AMLAAIKRTIHDIESGTISEEEQESSSVRVTMEDFLKSAKRLQPSV 936 (953)
T ss_pred HHHHHHHHHHHHhhhccccccccCCceEEEEHHHHHHHHHhcCCcc
Confidence 99999998752111 11122346699999999999999964
No 12
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=6.1e-32 Score=297.68 Aligned_cols=226 Identities=23% Similarity=0.321 Sum_probs=197.2
Q ss_pred ccccccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEe
Q 002386 549 FDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVC 628 (929)
Q Consensus 549 ~~~~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~ 628 (929)
...+|+++.|.|++++++.+-+..+. .|+-|.++|...|+||||+||||||||+||||+|.+.+ .+|++..
T Consensus 299 ~nv~F~dVkG~DEAK~ELeEiVefLk---dP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~------VPFF~~s 369 (752)
T KOG0734|consen 299 KNVTFEDVKGVDEAKQELEEIVEFLK---DPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAG------VPFFYAS 369 (752)
T ss_pred cccccccccChHHHHHHHHHHHHHhc---CcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccC------CCeEecc
Confidence 46678899999999988877555544 46689999999999999999999999999999999988 8999999
Q ss_pred ccccccCchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCCC
Q 002386 629 CSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIG 708 (929)
Q Consensus 629 ~s~L~~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~ 708 (929)
.+++..-.+|...++++++|..|+..+||||||||+|.+.+++..... ....+.+++|+..||++....
T Consensus 370 GSEFdEm~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~----~y~kqTlNQLLvEmDGF~qNe------- 438 (752)
T KOG0734|consen 370 GSEFDEMFVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQ----HYAKQTLNQLLVEMDGFKQNE------- 438 (752)
T ss_pred ccchhhhhhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHH----HHHHHHHHHHHHHhcCcCcCC-------
Confidence 999998889999999999999999999999999999999764433221 145688899999999987543
Q ss_pred cEEEEEecCCCCccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhhcccccCHHHHHHHHhhcCCCChhhHHHHHHHH
Q 002386 709 PIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRT 788 (929)
Q Consensus 709 ~VivIattn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~d~~l~~LA~~teG~s~~DL~~Lv~~A 788 (929)
+|+||++||.++.||++|.||||||.+|.+|.||...|.+||+.++.+..+. .+.+..-||+-|.||+++||++|+..|
T Consensus 439 GiIvigATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~-~~VD~~iiARGT~GFsGAdLaNlVNqA 517 (752)
T KOG0734|consen 439 GIIVIGATNFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLD-EDVDPKIIARGTPGFSGADLANLVNQA 517 (752)
T ss_pred ceEEEeccCChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhcCCcc-cCCCHhHhccCCCCCchHHHHHHHHHH
Confidence 6999999999999999999999999999999999999999999999864332 244578899999999999999999999
Q ss_pred HHHHhhc
Q 002386 789 VHAAVGR 795 (929)
Q Consensus 789 ~~~a~~r 795 (929)
+..|...
T Consensus 518 AlkAa~d 524 (752)
T KOG0734|consen 518 ALKAAVD 524 (752)
T ss_pred HHHHHhc
Confidence 9888765
No 13
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=6e-32 Score=289.18 Aligned_cols=262 Identities=21% Similarity=0.262 Sum_probs=219.2
Q ss_pred ccccccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEe
Q 002386 549 FDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVC 628 (929)
Q Consensus 549 ~~~~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~ 628 (929)
...+++++.|+..+++-+.+ .++++...|++|.....|. ++||++||||||||+||||+|.+++ ..|+.|+
T Consensus 207 p~ikW~DIagl~~AK~lL~E--AVvlPi~mPe~F~GirrPW-kgvLm~GPPGTGKTlLAKAvATEc~------tTFFNVS 277 (491)
T KOG0738|consen 207 PNIKWDDIAGLHEAKKLLKE--AVVLPIWMPEFFKGIRRPW-KGVLMVGPPGTGKTLLAKAVATECG------TTFFNVS 277 (491)
T ss_pred CCcChHhhcchHHHHHHHHH--HHhhhhhhHHHHhhccccc-ceeeeeCCCCCcHHHHHHHHHHhhc------CeEEEec
Confidence 34567788888888888887 5678888899999887666 5599999999999999999999998 8899999
Q ss_pred ccccccCchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCCC
Q 002386 629 CSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIG 708 (929)
Q Consensus 629 ~s~L~~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~ 708 (929)
.+.+.++|.|+.++.++-+|+.|+.++|++|||||||.|++.++. +..++.++++...|+-.||+......+ ..
T Consensus 278 sstltSKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~---s~EHEaSRRvKsELLvQmDG~~~t~e~---~k 351 (491)
T KOG0738|consen 278 SSTLTSKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGG---SSEHEASRRVKSELLVQMDGVQGTLEN---SK 351 (491)
T ss_pred hhhhhhhhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCC---ccchhHHHHHHHHHHHHhhcccccccc---ce
Confidence 999999999999999999999999999999999999999964433 345567789999999999998765432 23
Q ss_pred cEEEEEecCCCCccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhhcccccCHHHHHHHHhhcCCCChhhHHHHHHHH
Q 002386 709 PIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRT 788 (929)
Q Consensus 709 ~VivIattn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~d~~l~~LA~~teG~s~~DL~~Lv~~A 788 (929)
.|+|+|+||-+.+||.+|+| ||...|++|.|+.+.|..+++..+..... .++..++.|++.++||+++||.++|+.|
T Consensus 352 ~VmVLAATN~PWdiDEAlrR--RlEKRIyIPLP~~~~R~~Li~~~l~~~~~-~~~~~~~~lae~~eGySGaDI~nvCreA 428 (491)
T KOG0738|consen 352 VVMVLAATNFPWDIDEALRR--RLEKRIYIPLPDAEARSALIKILLRSVEL-DDPVNLEDLAERSEGYSGADITNVCREA 428 (491)
T ss_pred eEEEEeccCCCcchHHHHHH--HHhhheeeeCCCHHHHHHHHHHhhccccC-CCCccHHHHHHHhcCCChHHHHHHHHHH
Confidence 48999999999999999999 99999999999999999999998875432 3455689999999999999999999999
Q ss_pred HHHHhhccccCCc-----ccc-cccccccccccccccccccccccc
Q 002386 789 VHAAVGRYLHSDS-----SFE-KHIKPTLVRDDFSQAMHEFLPVAM 828 (929)
Q Consensus 789 ~~~a~~r~~~~~~-----~~~-~~~~~~lt~edf~~al~~~~P~sl 828 (929)
.+.+++|.+..-. ... ..-...++.+||+.|+....|+..
T Consensus 429 sm~~mRR~i~g~~~~ei~~lakE~~~~pv~~~Dfe~Al~~v~pSvs 474 (491)
T KOG0738|consen 429 SMMAMRRKIAGLTPREIRQLAKEEPKMPVTNEDFEEALRKVRPSVS 474 (491)
T ss_pred HHHHHHHHHhcCCcHHhhhhhhhccccccchhhHHHHHHHcCcCCC
Confidence 9999998752100 010 111245889999999999888653
No 14
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=5.6e-31 Score=266.38 Aligned_cols=244 Identities=22% Similarity=0.336 Sum_probs=209.3
Q ss_pred ccccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEecc
Q 002386 551 SNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCS 630 (929)
Q Consensus 551 ~~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s 630 (929)
.+..-++|++.++.+|.+. .-++-.+|++|..+|+..|.|+|||||||+|||.||+++|++.. +.|+.++.+
T Consensus 144 StYeMiGgLd~QIkeIkEV--IeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~------c~firvsgs 215 (404)
T KOG0728|consen 144 STYEMIGGLDKQIKEIKEV--IELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTD------CTFIRVSGS 215 (404)
T ss_pred cHHHHhccHHHHHHHHHHH--HhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcc------eEEEEechH
Confidence 3455678899999999984 46788899999999999999999999999999999999999876 889999999
Q ss_pred ccccCchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCCCcE
Q 002386 631 RLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPI 710 (929)
Q Consensus 631 ~L~~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V 710 (929)
+|..++.|+....++++|--|+.++|+|+|+||+|++.+.+.+..+...++..+.+++ |++.+|++.... ++
T Consensus 216 elvqk~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmle-llnqldgfeatk-------ni 287 (404)
T KOG0728|consen 216 ELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLE-LLNQLDGFEATK-------NI 287 (404)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHH-HHHhcccccccc-------ce
Confidence 9999999999999999999999999999999999999887766665555555544444 556788887654 59
Q ss_pred EEEEecCCCCccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhhcccccCHHHHHHHHhhcCCCChhhHHHHHHHHHH
Q 002386 711 AFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVH 790 (929)
Q Consensus 711 ivIattn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~d~~l~~LA~~teG~s~~DL~~Lv~~A~~ 790 (929)
-+|.+||+.+-||++|+||||+++.|+||+|+.+.|.+||+.+-++.++. ....+..+|+...|.++++++..|..|.+
T Consensus 288 kvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~-rgi~l~kiaekm~gasgaevk~vcteagm 366 (404)
T KOG0728|consen 288 KVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLT-RGINLRKIAEKMPGASGAEVKGVCTEAGM 366 (404)
T ss_pred EEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchh-cccCHHHHHHhCCCCccchhhhhhhhhhH
Confidence 99999999999999999999999999999999999999999776553322 12247899999999999999999999999
Q ss_pred HHhhccccCCcccccccccccccccccccccc
Q 002386 791 AAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHE 822 (929)
Q Consensus 791 ~a~~r~~~~~~~~~~~~~~~lt~edf~~al~~ 822 (929)
.|++. .+..+|.+||+-|...
T Consensus 367 ~alre-----------rrvhvtqedfemav~k 387 (404)
T KOG0728|consen 367 YALRE-----------RRVHVTQEDFEMAVAK 387 (404)
T ss_pred HHHHH-----------hhccccHHHHHHHHHH
Confidence 99876 2367999999877654
No 15
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=8.7e-31 Score=266.36 Aligned_cols=247 Identities=19% Similarity=0.316 Sum_probs=211.7
Q ss_pred ccccccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEe
Q 002386 549 FDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVC 628 (929)
Q Consensus 549 ~~~~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~ 628 (929)
.....++++|++++++++.+ .++++..+.+.|.++|+.+|.|+|+|||||||||.+||+.|..-+ +.|.-+.
T Consensus 166 PtE~YsDiGGldkQIqELvE--AiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~------aTFLKLA 237 (424)
T KOG0652|consen 166 PTEQYSDIGGLDKQIQELVE--AIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTN------ATFLKLA 237 (424)
T ss_pred CcccccccccHHHHHHHHHH--HhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhcc------chHHHhc
Confidence 35567899999999999999 568888999999999999999999999999999999999998876 5566666
Q ss_pred ccccccCchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCCC
Q 002386 629 CSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIG 708 (929)
Q Consensus 629 ~s~L~~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~ 708 (929)
...|...+.|+..+.+++.|..|...+|+|+||||+|.+...+.+.+..+..+..+.+++ |++.+|++.+..
T Consensus 238 gPQLVQMfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLE-LLNQLDGFss~~------- 309 (424)
T KOG0652|consen 238 GPQLVQMFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLE-LLNQLDGFSSDD------- 309 (424)
T ss_pred chHHHhhhhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHH-HHHhhcCCCCcc-------
Confidence 777888888999999999999999999999999999999888777777666555544444 556678877543
Q ss_pred cEEEEEecCCCCccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhhcccccCHHHHHHHHhhcCCCChhhHHHHHHHH
Q 002386 709 PIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRT 788 (929)
Q Consensus 709 ~VivIattn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~d~~l~~LA~~teG~s~~DL~~Lv~~A 788 (929)
.|-+|++||+.+-|||+|+|+||+++.|+||.|+.+.|.+|++.+.++... -+|..++++|+.|++|+++..+.+|-.|
T Consensus 310 ~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv-~~DvNfeELaRsTddFNGAQcKAVcVEA 388 (424)
T KOG0652|consen 310 RVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNV-SDDVNFEELARSTDDFNGAQCKAVCVEA 388 (424)
T ss_pred ceEEEeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCC-CCCCCHHHHhhcccccCchhheeeehhh
Confidence 599999999999999999999999999999999999999999977654332 2444699999999999999999999999
Q ss_pred HHHHhhccccCCccccccccccccccccccccccc
Q 002386 789 VHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEF 823 (929)
Q Consensus 789 ~~~a~~r~~~~~~~~~~~~~~~lt~edf~~al~~~ 823 (929)
.+.|++| +...++.+||...+.+.
T Consensus 389 GMiALRr-----------~atev~heDfmegI~eV 412 (424)
T KOG0652|consen 389 GMIALRR-----------GATEVTHEDFMEGILEV 412 (424)
T ss_pred hHHHHhc-----------ccccccHHHHHHHHHHH
Confidence 9999988 34668899998776543
No 16
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.9e-30 Score=262.76 Aligned_cols=247 Identities=20% Similarity=0.321 Sum_probs=211.6
Q ss_pred CccccccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEE
Q 002386 548 GFDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFV 627 (929)
Q Consensus 548 ~~~~~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V 627 (929)
..+.+..+++|++.+++++.+ .+-++....+++.+.|+.||+|+|+|||||||||+|++++|+... +.|+.|
T Consensus 149 kpdvsy~diggld~qkqeire--avelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~------a~firv 220 (408)
T KOG0727|consen 149 KPDVSYADIGGLDVQKQEIRE--AVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTT------AAFIRV 220 (408)
T ss_pred CCCccccccccchhhHHHHHH--HHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccc------hheeee
Confidence 445667899999999999999 456777788999999999999999999999999999999999876 889999
Q ss_pred eccccccCchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCC
Q 002386 628 CCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGI 707 (929)
Q Consensus 628 ~~s~L~~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~ 707 (929)
..+++..++.|+....++++|..|+.++|+|+||||+|.++.++-+...+.. ...++++-.|++.||++....
T Consensus 221 vgsefvqkylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgad-revqril~ellnqmdgfdq~~------ 293 (408)
T KOG0727|consen 221 VGSEFVQKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGAD-REVQRILIELLNQMDGFDQTT------ 293 (408)
T ss_pred ccHHHHHHHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhcccccccc-HHHHHHHHHHHHhccCcCccc------
Confidence 9999999999999999999999999999999999999999876655544333 344566666778888887654
Q ss_pred CcEEEEEecCCCCccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhhcccccCHHHHHHHHhhcCCCChhhHHHHHHH
Q 002386 708 GPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDR 787 (929)
Q Consensus 708 ~~VivIattn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~d~~l~~LA~~teG~s~~DL~~Lv~~ 787 (929)
+|-+|.+||+.+.+||+|+||||+++.|+||.||..+++-++.....+..+. ++.+++.+..+.+..+++|+..+|+.
T Consensus 294 -nvkvimatnradtldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls-~~vdle~~v~rpdkis~adi~aicqe 371 (408)
T KOG0727|consen 294 -NVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLS-DEVDLEDLVARPDKISGADINAICQE 371 (408)
T ss_pred -ceEEEEecCcccccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCC-cccCHHHHhcCccccchhhHHHHHHH
Confidence 5999999999999999999999999999999999999999998877654432 33458899999999999999999999
Q ss_pred HHHHHhhccccCCcccccccccccccccccccccc
Q 002386 788 TVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHE 822 (929)
Q Consensus 788 A~~~a~~r~~~~~~~~~~~~~~~lt~edf~~al~~ 822 (929)
|.+.|.+. .+-.+...||+++.+.
T Consensus 372 agm~avr~-----------nryvvl~kd~e~ay~~ 395 (408)
T KOG0727|consen 372 AGMLAVRE-----------NRYVVLQKDFEKAYKT 395 (408)
T ss_pred HhHHHHHh-----------cceeeeHHHHHHHHHh
Confidence 99999875 2356777888877554
No 17
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.4e-30 Score=277.90 Aligned_cols=232 Identities=22% Similarity=0.316 Sum_probs=205.4
Q ss_pred cCCccccccccccchhHHHHHHHHHHHhcCCCchhhhhhc-CCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeE
Q 002386 546 TQGFDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTY-HLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHI 624 (929)
Q Consensus 546 ~~~~~~~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~-~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~ 624 (929)
+..+..++.+++|++..++++.+ .++++...+++|... -+.++.|||||||||||||++|+++|++.+ +.|
T Consensus 84 p~~I~v~f~DIggLe~v~~~L~e--~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeag------a~f 155 (386)
T KOG0737|consen 84 PSEIGVSFDDIGGLEEVKDALQE--LVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAG------ANF 155 (386)
T ss_pred hhhceeehhhccchHHHHHHHHH--HHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcC------CCc
Confidence 34567788999999999999998 568888899999543 346778999999999999999999999998 889
Q ss_pred EEEeccccccCchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCc
Q 002386 625 VFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSS 704 (929)
Q Consensus 625 ~~V~~s~L~~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~ 704 (929)
+.|..+.+.++|+++.++.+..+|..|..-+|+||||||+|.+++.+ ++..++....+...|....|++....+.
T Consensus 156 Inv~~s~lt~KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R----~s~dHEa~a~mK~eFM~~WDGl~s~~~~- 230 (386)
T KOG0737|consen 156 INVSVSNLTSKWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQR----RSTDHEATAMMKNEFMALWDGLSSKDSE- 230 (386)
T ss_pred ceeeccccchhhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhc----ccchHHHHHHHHHHHHHHhccccCCCCc-
Confidence 99999999999999999999999999999999999999999999654 2345567788899999999998765432
Q ss_pred cCCCcEEEEEecCCCCccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhhcccccCHHHHHHHHhhcCCCChhhHHHH
Q 002386 705 CGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEIL 784 (929)
Q Consensus 705 ~~~~~VivIattn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~d~~l~~LA~~teG~s~~DL~~L 784 (929)
.|+|+|+||++.++|.++.| |+...++++.|+..+|.+||+-+++...+. ++-++..+|..|+||+++||..+
T Consensus 231 ----rVlVlgATNRP~DlDeAiiR--R~p~rf~V~lP~~~qR~kILkviLk~e~~e-~~vD~~~iA~~t~GySGSDLkel 303 (386)
T KOG0737|consen 231 ----RVLVLGATNRPFDLDEAIIR--RLPRRFHVGLPDAEQRRKILKVILKKEKLE-DDVDLDEIAQMTEGYSGSDLKEL 303 (386)
T ss_pred ----eEEEEeCCCCCccHHHHHHH--hCcceeeeCCCchhhHHHHHHHHhcccccC-cccCHHHHHHhcCCCcHHHHHHH
Confidence 59999999999999999999 999999999999999999999999876554 45568999999999999999999
Q ss_pred HHHHHHHHhhccc
Q 002386 785 VDRTVHAAVGRYL 797 (929)
Q Consensus 785 v~~A~~~a~~r~~ 797 (929)
|+.|.+..++..+
T Consensus 304 C~~Aa~~~ire~~ 316 (386)
T KOG0737|consen 304 CRLAALRPIRELL 316 (386)
T ss_pred HHHHhHhHHHHHH
Confidence 9999999888765
No 18
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.97 E-value=6.1e-30 Score=290.34 Aligned_cols=249 Identities=21% Similarity=0.326 Sum_probs=207.2
Q ss_pred ccccccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEe
Q 002386 549 FDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVC 628 (929)
Q Consensus 549 ~~~~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~ 628 (929)
...++.+++|++.+++++.+.+. ++..++++|..+|+++|+++|||||||||||++|+++|++++ .+++.+.
T Consensus 140 p~v~~~digGl~~~k~~l~~~v~--~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~------~~fi~i~ 211 (398)
T PTZ00454 140 PDVTYSDIGGLDIQKQEIREAVE--LPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTT------ATFIRVV 211 (398)
T ss_pred CCCCHHHcCCHHHHHHHHHHHHH--HHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcC------CCEEEEe
Confidence 35678899999999999998553 444578899999999999999999999999999999999987 7788888
Q ss_pred ccccccCchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCCC
Q 002386 629 CSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIG 708 (929)
Q Consensus 629 ~s~L~~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~ 708 (929)
++.+...+.++....++++|..|...+|+||||||+|.+++.+.+..... .....+....|+..++++... .
T Consensus 212 ~s~l~~k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~-d~~~~r~l~~LL~~ld~~~~~-------~ 283 (398)
T PTZ00454 212 GSEFVQKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGA-DREVQRILLELLNQMDGFDQT-------T 283 (398)
T ss_pred hHHHHHHhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCc-cHHHHHHHHHHHHHhhccCCC-------C
Confidence 88888888888888999999999999999999999999986543332222 222334555566666665432 2
Q ss_pred cEEEEEecCCCCccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhhcccccCHHHHHHHHhhcCCCChhhHHHHHHHH
Q 002386 709 PIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRT 788 (929)
Q Consensus 709 ~VivIattn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~d~~l~~LA~~teG~s~~DL~~Lv~~A 788 (929)
++.+|++||+++.+|++++|+|||+..|+|+.|+.++|.+||+.++.+.++. .+..+..++..|+||+++||+.+|++|
T Consensus 284 ~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~-~dvd~~~la~~t~g~sgaDI~~l~~eA 362 (398)
T PTZ00454 284 NVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLS-EEVDLEDFVSRPEKISAADIAAICQEA 362 (398)
T ss_pred CEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCC-cccCHHHHHHHcCCCCHHHHHHHHHHH
Confidence 5899999999999999999999999999999999999999999988765543 344688999999999999999999999
Q ss_pred HHHHhhccccCCccccccccccccccccccccccccc
Q 002386 789 VHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLP 825 (929)
Q Consensus 789 ~~~a~~r~~~~~~~~~~~~~~~lt~edf~~al~~~~P 825 (929)
.+.|+++ ....++.+||.+|+.....
T Consensus 363 ~~~A~r~-----------~~~~i~~~df~~A~~~v~~ 388 (398)
T PTZ00454 363 GMQAVRK-----------NRYVILPKDFEKGYKTVVR 388 (398)
T ss_pred HHHHHHc-----------CCCccCHHHHHHHHHHHHh
Confidence 9999876 3357999999999887543
No 19
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.97 E-value=1.5e-29 Score=292.71 Aligned_cols=244 Identities=20% Similarity=0.286 Sum_probs=204.4
Q ss_pred cccccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEec
Q 002386 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (929)
Q Consensus 550 ~~~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~ 629 (929)
..++++++|++..++.+.++...+ ......+|++.|+++|||||||||||++||++|.+++ .+++.+++
T Consensus 224 ~~~~~dvgGl~~lK~~l~~~~~~~-----~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~------~~~~~l~~ 292 (489)
T CHL00195 224 NEKISDIGGLDNLKDWLKKRSTSF-----SKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQ------LPLLRLDV 292 (489)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHh-----hHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhC------CCEEEEEh
Confidence 456789999999988887754322 1234567899999999999999999999999999998 88999999
Q ss_pred cccccCchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCCCc
Q 002386 630 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (929)
Q Consensus 630 s~L~~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (929)
+.+.+.+.|+.+..++++|..|...+|+||||||+|.+++.+.. ........++...|+..|++.. .+
T Consensus 293 ~~l~~~~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~---~~d~~~~~rvl~~lL~~l~~~~---------~~ 360 (489)
T CHL00195 293 GKLFGGIVGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSES---KGDSGTTNRVLATFITWLSEKK---------SP 360 (489)
T ss_pred HHhcccccChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccC---CCCchHHHHHHHHHHHHHhcCC---------Cc
Confidence 99999999999999999999999999999999999999853221 1122334567777777776421 25
Q ss_pred EEEEEecCCCCccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhhcccc-cCHHHHHHHHhhcCCCChhhHHHHHHHH
Q 002386 710 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLE-CSDEILLDVASKCDGYDAYDLEILVDRT 788 (929)
Q Consensus 710 VivIattn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~-~~d~~l~~LA~~teG~s~~DL~~Lv~~A 788 (929)
|++|+|||+++.+|+++.|+|||+..++++.|+.++|.+||+.++.+.... ..+..+..+|..|+||+++||+.+|..|
T Consensus 361 V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA 440 (489)
T CHL00195 361 VFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEA 440 (489)
T ss_pred eEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999875433 3456789999999999999999999999
Q ss_pred HHHHhhccccCCcccccccccccccccccccccccccccc
Q 002386 789 VHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLPVAM 828 (929)
Q Consensus 789 ~~~a~~r~~~~~~~~~~~~~~~lt~edf~~al~~~~P~sl 828 (929)
.+.|+.+. ..++.+||..++..+.|.+.
T Consensus 441 ~~~A~~~~------------~~lt~~dl~~a~~~~~Pls~ 468 (489)
T CHL00195 441 MYIAFYEK------------REFTTDDILLALKQFIPLAQ 468 (489)
T ss_pred HHHHHHcC------------CCcCHHHHHHHHHhcCCCcc
Confidence 98887641 45899999999999999764
No 20
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=9.1e-30 Score=298.36 Aligned_cols=249 Identities=20% Similarity=0.287 Sum_probs=216.1
Q ss_pred CccccccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEE
Q 002386 548 GFDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFV 627 (929)
Q Consensus 548 ~~~~~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V 627 (929)
+....|.++.|.++++++|.|.+..+. +|+.|.++|...|+|+||+||||||||.||||+|.+.+ .+|+.+
T Consensus 305 ~t~V~FkDVAG~deAK~El~E~V~fLK---NP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAg------VPF~sv 375 (774)
T KOG0731|consen 305 NTGVKFKDVAGVDEAKEELMEFVKFLK---NPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAG------VPFFSV 375 (774)
T ss_pred CCCCccccccCcHHHHHHHHHHHHHhc---CHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccC------Cceeee
Confidence 344678899999999999999776665 46799999999999999999999999999999999988 999999
Q ss_pred eccccccCchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCC
Q 002386 628 CCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGI 707 (929)
Q Consensus 628 ~~s~L~~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~ 707 (929)
+.+++.....+.-..+++++|..|+..+|+|+|+||+|.+...+............++.+++|+..||++....
T Consensus 376 SGSEFvE~~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~------ 449 (774)
T KOG0731|consen 376 SGSEFVEMFVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSK------ 449 (774)
T ss_pred chHHHHHHhcccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCC------
Confidence 99999877776668889999999999999999999999998765421122334455688899999999986542
Q ss_pred CcEEEEEecCCCCccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhhcccccCHHHHHHHHhhcCCCChhhHHHHHHH
Q 002386 708 GPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDR 787 (929)
Q Consensus 708 ~~VivIattn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~d~~l~~LA~~teG~s~~DL~~Lv~~ 787 (929)
.|+++++||+++-||++|+|||||+++|+++.|+...|.+|++.++....+..++..+..+|..|.||+++||.++|..
T Consensus 450 -~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~ne 528 (774)
T KOG0731|consen 450 -GVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNE 528 (774)
T ss_pred -cEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhH
Confidence 5999999999999999999999999999999999999999999999987777667778889999999999999999999
Q ss_pred HHHHHhhccccCCccccccccccccccccccccccc
Q 002386 788 TVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEF 823 (929)
Q Consensus 788 A~~~a~~r~~~~~~~~~~~~~~~lt~edf~~al~~~ 823 (929)
|+..|.++ +...|+..||..|+++.
T Consensus 529 aa~~a~r~-----------~~~~i~~~~~~~a~~Rv 553 (774)
T KOG0731|consen 529 AALLAARK-----------GLREIGTKDLEYAIERV 553 (774)
T ss_pred HHHHHHHh-----------ccCccchhhHHHHHHHH
Confidence 99998886 33668888888888743
No 21
>PF09262 PEX-1N: Peroxisome biogenesis factor 1, N-terminal ; InterPro: IPR015342 This domain adopts a double psi beta-barrel fold, similar in structure to the Cdc48 N-terminal domain. It has been suggested that this domain may be involved in interactions with ubiquitin, ubiquitin-like protein modifiers, or ubiquitin-like domains, such as Ubx. Furthermore, the domain may possess a putative adaptor or substrate binding site, allowing for peroxisomal biogenesis, membrane fusion and protein translocation []. ; GO: 0005524 ATP binding, 0007031 peroxisome organization, 0005777 peroxisome; PDB: 1WLF_A.
Probab=99.96 E-value=1.1e-30 Score=226.13 Aligned_cols=77 Identities=48% Similarity=0.830 Sum_probs=62.2
Q ss_pred ceeEEEecCCcchhHHHHhcHHHHHHHHhcccceecCCCeEeEEecCceEEEEEEeccCCCCC---eEEecCCCeEEEcc
Q 002386 94 ATLVTIEPLTEDDWEVLELNSEHAEAAILNQVRIVHEAMRFPLWLHGRTIITFHVVSTFPKKP---VVQLVPGTEVAVAP 170 (929)
Q Consensus 94 ~~~v~veP~t~dDWEi~el~a~~le~~lL~Q~r~v~~~~~~~~~~~~~~~~~~~v~~~~p~~~---~~~l~~~tev~vaP 170 (929)
|++|+|||+|+|||||||+||+|||++||+|+|||++||+||||++++++++|+|.++.|++. ||||+++|||+|||
T Consensus 1 A~~V~veP~T~dDWEIlEl~A~~lE~~lL~QiRvv~~~~~~~v~v~~~~~i~~~V~~i~p~~~~~~~~~L~~~TEv~VaP 80 (80)
T PF09262_consen 1 AKSVEVEPLTSDDWEILELHAEFLEDQLLSQIRVVFPGQVFPVWVSQNTVIKFKVVSIEPSSSAEGCARLSPDTEVIVAP 80 (80)
T ss_dssp -SEEEEEESSHHHHHHHHHS-SSHHHHHHHH--EE-TT-EEEEESSSS-EEEEEEEEEES--S---SEE--TT-EEEE--
T ss_pred CcEEEEEcCCccHHHHHHHhHHHHHHHHHHhheeecCCCEEEEEEcCCeEEEEEEEEccCCCCceeEEEeCCCcEEEECC
Confidence 789999999999999999999999999999999999999999999999999999999999985 99999999999998
No 22
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=8.8e-30 Score=263.61 Aligned_cols=227 Identities=22% Similarity=0.323 Sum_probs=201.1
Q ss_pred ccccccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEe
Q 002386 549 FDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVC 628 (929)
Q Consensus 549 ~~~~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~ 628 (929)
...+++++.|++.+++.+.+ .++++-..|++|.....|. +++||||||||||+.||+|+|-+.+ ..|+.|+
T Consensus 128 PNVkWsDVAGLE~AKeALKE--AVILPIKFPqlFtGkR~Pw-rgiLLyGPPGTGKSYLAKAVATEAn------STFFSvS 198 (439)
T KOG0739|consen 128 PNVKWSDVAGLEGAKEALKE--AVILPIKFPQLFTGKRKPW-RGILLYGPPGTGKSYLAKAVATEAN------STFFSVS 198 (439)
T ss_pred CCCchhhhccchhHHHHHHh--heeecccchhhhcCCCCcc-eeEEEeCCCCCcHHHHHHHHHhhcC------CceEEee
Confidence 45567889999999999998 6688889999999876666 5599999999999999999999987 6788999
Q ss_pred ccccccCchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCCC
Q 002386 629 CSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIG 708 (929)
Q Consensus 629 ~s~L~~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~ 708 (929)
.++|.++|.|+.+++++.+|+.|+.++|+||||||+|.+++.+++.+. +..+++...|+-.|.+......
T Consensus 199 SSDLvSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEs----easRRIKTEfLVQMqGVG~d~~------ 268 (439)
T KOG0739|consen 199 SSDLVSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENES----EASRRIKTEFLVQMQGVGNDND------ 268 (439)
T ss_pred hHHHHHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCch----HHHHHHHHHHHHhhhccccCCC------
Confidence 999999999999999999999999999999999999999976655443 3456777777777887664433
Q ss_pred cEEEEEecCCCCccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhhcccccCHHHHHHHHhhcCCCChhhHHHHHHHH
Q 002386 709 PIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRT 788 (929)
Q Consensus 709 ~VivIattn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~d~~l~~LA~~teG~s~~DL~~Lv~~A 788 (929)
+|+|+++||-+..||.+++| ||+..|++|.|+...|..+++.++......+++.++..|+..|+||+++|+..+++.|
T Consensus 269 gvLVLgATNiPw~LDsAIRR--RFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisivVrDa 346 (439)
T KOG0739|consen 269 GVLVLGATNIPWVLDSAIRR--RFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIVVRDA 346 (439)
T ss_pred ceEEEecCCCchhHHHHHHH--HhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEEEehhh
Confidence 59999999999999999999 9999999999999999999999999888889999999999999999999999999999
Q ss_pred HHHHhhcc
Q 002386 789 VHAAVGRY 796 (929)
Q Consensus 789 ~~~a~~r~ 796 (929)
.++-+++.
T Consensus 347 lmePvRkv 354 (439)
T KOG0739|consen 347 LMEPVRKV 354 (439)
T ss_pred hhhhHHHh
Confidence 88877664
No 23
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=3.1e-30 Score=266.14 Aligned_cols=245 Identities=20% Similarity=0.321 Sum_probs=206.8
Q ss_pred cccccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEec
Q 002386 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (929)
Q Consensus 550 ~~~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~ 629 (929)
..++.+++|++.++++|.+ ++-++..+|+++..+|+.+|.+|+|||+||||||.||+|+|+.-. +.|..+-.
T Consensus 181 ~Ety~diGGle~QiQEiKE--svELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTS------ATFlRvvG 252 (440)
T KOG0726|consen 181 QETYADIGGLESQIQEIKE--SVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTS------ATFLRVVG 252 (440)
T ss_pred hhhhcccccHHHHHHHHHH--hhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccc------hhhhhhhh
Confidence 4567899999999999999 567888899999999999999999999999999999999999876 78889999
Q ss_pred cccccCchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCCCc
Q 002386 630 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (929)
Q Consensus 630 s~L~~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (929)
++|..++.|+..+.++++|..|..++|+|+||||||.+...+-+.......+..+.++ .|++.+|+|.++ +.
T Consensus 253 seLiQkylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmL-ELLNQldGFdsr-------gD 324 (440)
T KOG0726|consen 253 SELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTML-ELLNQLDGFDSR-------GD 324 (440)
T ss_pred HHHHHHHhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHH-HHHHhccCcccc-------CC
Confidence 9999999999999999999999999999999999999986655544333323333333 455566666553 35
Q ss_pred EEEEEecCCCCccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhhcccccCH-HHHHHHHhhcCCCChhhHHHHHHHH
Q 002386 710 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSD-EILLDVASKCDGYDAYDLEILVDRT 788 (929)
Q Consensus 710 VivIattn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~d-~~l~~LA~~teG~s~~DL~~Lv~~A 788 (929)
|-+|.+||+.++|||+|.||||+++.|+|+.||...++.||..+..+. .+.. ..++.+...-+.++++||+++|..|
T Consensus 325 vKvimATnrie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~M--tl~~dVnle~li~~kddlSGAdIkAictEa 402 (440)
T KOG0726|consen 325 VKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRM--TLAEDVNLEELIMTKDDLSGADIKAICTEA 402 (440)
T ss_pred eEEEEecccccccCHhhcCCCccccccccCCCchhhhceeEEEeeccc--chhccccHHHHhhcccccccccHHHHHHHH
Confidence 999999999999999999999999999999999999999999766543 3333 3588888888999999999999999
Q ss_pred HHHHhhccccCCccccccccccccccccccccccc
Q 002386 789 VHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEF 823 (929)
Q Consensus 789 ~~~a~~r~~~~~~~~~~~~~~~lt~edf~~al~~~ 823 (929)
...|++.. +-.++++||.++.+..
T Consensus 403 GllAlRer-----------Rm~vt~~DF~ka~e~V 426 (440)
T KOG0726|consen 403 GLLALRER-----------RMKVTMEDFKKAKEKV 426 (440)
T ss_pred hHHHHHHH-----------HhhccHHHHHHHHHHH
Confidence 99998753 2468999999887653
No 24
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.96 E-value=1.8e-29 Score=257.27 Aligned_cols=238 Identities=24% Similarity=0.322 Sum_probs=196.5
Q ss_pred cccccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEec
Q 002386 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (929)
Q Consensus 550 ~~~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~ 629 (929)
+.++++++|++.++....=-+.++-. |+.|.. =.|++||||||||||||++||++|.+.. .+++.+..
T Consensus 117 ~it~ddViGqEeAK~kcrli~~yLen---Pe~Fg~---WAPknVLFyGppGTGKTm~Akalane~k------vp~l~vka 184 (368)
T COG1223 117 DITLDDVIGQEEAKRKCRLIMEYLEN---PERFGD---WAPKNVLFYGPPGTGKTMMAKALANEAK------VPLLLVKA 184 (368)
T ss_pred cccHhhhhchHHHHHHHHHHHHHhhC---hHHhcc---cCcceeEEECCCCccHHHHHHHHhcccC------CceEEech
Confidence 44577888998877665433344444 334443 3478999999999999999999999987 88999999
Q ss_pred cccccCchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCCCc
Q 002386 630 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (929)
Q Consensus 630 s~L~~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (929)
.+|.|+.+|+..+.++++++.|+..+|||+||||+|.+.-.+.-.+ -......+.+.|+..||++.... +
T Consensus 185 t~liGehVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQe---lRGDVsEiVNALLTelDgi~ene-------G 254 (368)
T COG1223 185 TELIGEHVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQE---LRGDVSEIVNALLTELDGIKENE-------G 254 (368)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHH---hcccHHHHHHHHHHhccCcccCC-------c
Confidence 9999999999999999999999999999999999999974221111 11123578888999999877432 5
Q ss_pred EEEEEecCCCCccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhhcccccCHHHHHHHHhhcCCCChhhH-HHHHHHH
Q 002386 710 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDL-EILVDRT 788 (929)
Q Consensus 710 VivIattn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~d~~l~~LA~~teG~s~~DL-~~Lv~~A 788 (929)
|+.|++||+++.||+++++ ||...|+|..|+.++|.+|++.++++..+.++-. ++.++..|.|++++|| +.++..|
T Consensus 255 VvtIaaTN~p~~LD~aiRs--RFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~-~~~~~~~t~g~SgRdikekvlK~a 331 (368)
T COG1223 255 VVTIAATNRPELLDPAIRS--RFEEEIEFKLPNDEERLEILEYYAKKFPLPVDAD-LRYLAAKTKGMSGRDIKEKVLKTA 331 (368)
T ss_pred eEEEeecCChhhcCHHHHh--hhhheeeeeCCChHHHHHHHHHHHHhCCCccccC-HHHHHHHhCCCCchhHHHHHHHHH
Confidence 9999999999999999999 9999999999999999999999999877776544 8999999999999999 5688999
Q ss_pred HHHHhhccccCCccccccccccccccccccccccc
Q 002386 789 VHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEF 823 (929)
Q Consensus 789 ~~~a~~r~~~~~~~~~~~~~~~lt~edf~~al~~~ 823 (929)
.|+|+.. ++..++.+|++.|++.-
T Consensus 332 Lh~Ai~e-----------d~e~v~~edie~al~k~ 355 (368)
T COG1223 332 LHRAIAE-----------DREKVEREDIEKALKKE 355 (368)
T ss_pred HHHHHHh-----------chhhhhHHHHHHHHHhh
Confidence 9999876 34668999999998753
No 25
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.96 E-value=4.7e-29 Score=284.51 Aligned_cols=250 Identities=23% Similarity=0.347 Sum_probs=206.2
Q ss_pred cccccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEec
Q 002386 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (929)
Q Consensus 550 ~~~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~ 629 (929)
...+++++|++.+++++.+.+. ++..+++.|..+|+.+|+++|||||||||||++|+++|++++ .+++.++|
T Consensus 127 ~~~~~di~Gl~~~~~~l~~~i~--~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~------~~~i~v~~ 198 (389)
T PRK03992 127 NVTYEDIGGLEEQIREVREAVE--LPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETN------ATFIRVVG 198 (389)
T ss_pred CCCHHHhCCcHHHHHHHHHHHH--HHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhC------CCEEEeeh
Confidence 4557799999999999998654 345578899999999999999999999999999999999987 77889999
Q ss_pred cccccCchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCCCc
Q 002386 630 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (929)
Q Consensus 630 s~L~~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (929)
+.+...+.++....++.+|..|.++.|+||||||+|.+++.+.+...... ....+.+..|+..++++... ++
T Consensus 199 ~~l~~~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~-~~~~~~l~~lL~~ld~~~~~-------~~ 270 (389)
T PRK03992 199 SELVQKFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGD-REVQRTLMQLLAEMDGFDPR-------GN 270 (389)
T ss_pred HHHhHhhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCcc-HHHHHHHHHHHHhccccCCC-------CC
Confidence 99988888888899999999999999999999999999865443322222 22233334454555544322 25
Q ss_pred EEEEEecCCCCccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhhcccccCHHHHHHHHhhcCCCChhhHHHHHHHHH
Q 002386 710 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTV 789 (929)
Q Consensus 710 VivIattn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~d~~l~~LA~~teG~s~~DL~~Lv~~A~ 789 (929)
+.||+|||+++.+|++++++|||+..++|++|+.++|.+||+.++.+..+. .+..+..+|..|+||+++||+.+|++|.
T Consensus 271 v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~-~~~~~~~la~~t~g~sgadl~~l~~eA~ 349 (389)
T PRK03992 271 VKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLA-DDVDLEELAELTEGASGADLKAICTEAG 349 (389)
T ss_pred EEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCC-CcCCHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999988765433 2345889999999999999999999999
Q ss_pred HHHhhccccCCccccccccccccccccccccccccccc
Q 002386 790 HAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLPVA 827 (929)
Q Consensus 790 ~~a~~r~~~~~~~~~~~~~~~lt~edf~~al~~~~P~s 827 (929)
+.|+++ ....++.+||.+|+....+..
T Consensus 350 ~~a~~~-----------~~~~i~~~d~~~A~~~~~~~~ 376 (389)
T PRK03992 350 MFAIRD-----------DRTEVTMEDFLKAIEKVMGKE 376 (389)
T ss_pred HHHHHc-----------CCCCcCHHHHHHHHHHHhccc
Confidence 999876 235699999999999877654
No 26
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.5e-28 Score=278.82 Aligned_cols=227 Identities=24% Similarity=0.253 Sum_probs=199.3
Q ss_pred ccccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEecc
Q 002386 551 SNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCS 630 (929)
Q Consensus 551 ~~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s 630 (929)
..+.+++|+.++++-+.+ ...++.+++.+|.+..++.+.|||||||||||||.||-++|..++ ..|+.|...
T Consensus 664 i~w~digg~~~~k~~l~~--~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~------~~fisvKGP 735 (952)
T KOG0735|consen 664 IRWEDIGGLFEAKKVLEE--VIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSN------LRFISVKGP 735 (952)
T ss_pred CCceecccHHHHHHHHHH--HHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCC------eeEEEecCH
Confidence 345677777777776666 456788999999999999999999999999999999999999988 889999999
Q ss_pred ccccCchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCCCcE
Q 002386 631 RLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPI 710 (929)
Q Consensus 631 ~L~~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V 710 (929)
++..++.|..++.++++|+.|+..+|||||+||+|+++|.++.... ....++.++|+..||+..+- .+|
T Consensus 736 ElL~KyIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsT----GVTDRVVNQlLTelDG~Egl-------~GV 804 (952)
T KOG0735|consen 736 ELLSKYIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDST----GVTDRVVNQLLTELDGAEGL-------DGV 804 (952)
T ss_pred HHHHHHhcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCC----CchHHHHHHHHHhhcccccc-------ceE
Confidence 9999999999999999999999999999999999999986654432 24468999999999986643 369
Q ss_pred EEEEecCCCCccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhhcccccCHHHHHHHHhhcCCCChhhHHHHHHHHHH
Q 002386 711 AFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVH 790 (929)
Q Consensus 711 ivIattn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~d~~l~~LA~~teG~s~~DL~~Lv~~A~~ 790 (929)
.++|+|.+++.+||+|+||||+++.++-+.|+..+|.+|++.+.....+ .++.+++.+|..|+||+++||..|+..|..
T Consensus 805 ~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~-~~~vdl~~~a~~T~g~tgADlq~ll~~A~l 883 (952)
T KOG0735|consen 805 YILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLK-DTDVDLECLAQKTDGFTGADLQSLLYNAQL 883 (952)
T ss_pred EEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCC-ccccchHHHhhhcCCCchhhHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999987664333 356679999999999999999999999998
Q ss_pred HHhhccc
Q 002386 791 AAVGRYL 797 (929)
Q Consensus 791 ~a~~r~~ 797 (929)
.|..+.+
T Consensus 884 ~avh~~l 890 (952)
T KOG0735|consen 884 AAVHEIL 890 (952)
T ss_pred HHHHHHH
Confidence 8887765
No 27
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.96 E-value=2.4e-28 Score=278.81 Aligned_cols=246 Identities=20% Similarity=0.317 Sum_probs=203.6
Q ss_pred cccccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEec
Q 002386 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (929)
Q Consensus 550 ~~~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~ 629 (929)
..++.+++|++.+++++.+.+. ++..++++|..+++.++.++|||||||||||++|+++|.++. ..++.+.+
T Consensus 179 ~~~~~DIgGl~~qi~~l~e~v~--lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~------~~fi~V~~ 250 (438)
T PTZ00361 179 LESYADIGGLEQQIQEIKEAVE--LPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETS------ATFLRVVG 250 (438)
T ss_pred CCCHHHhcCHHHHHHHHHHHHH--hhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhC------CCEEEEec
Confidence 4567899999999999998654 345678899999999999999999999999999999999987 67888889
Q ss_pred cccccCchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCCCc
Q 002386 630 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (929)
Q Consensus 630 s~L~~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (929)
+++.+.+.+.....++.+|..|.++.|+||||||+|.++..+.+........ ..+.+..|+..++++... .+
T Consensus 251 seL~~k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e-~qr~ll~LL~~Ldg~~~~-------~~ 322 (438)
T PTZ00361 251 SELIQKYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKE-IQRTMLELLNQLDGFDSR-------GD 322 (438)
T ss_pred chhhhhhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHH-HHHHHHHHHHHHhhhccc-------CC
Confidence 9998888888888999999999999999999999999986443322222222 223334455666665432 25
Q ss_pred EEEEEecCCCCccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhhcccccCHHHHHHHHhhcCCCChhhHHHHHHHHH
Q 002386 710 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTV 789 (929)
Q Consensus 710 VivIattn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~d~~l~~LA~~teG~s~~DL~~Lv~~A~ 789 (929)
+.||++||+++.+|+++.|+|||+..|+|+.||.++|.+||+.++.+..+. ++..+..++..++||+++||+.+|..|.
T Consensus 323 V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~-~dvdl~~la~~t~g~sgAdI~~i~~eA~ 401 (438)
T PTZ00361 323 VKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLA-EDVDLEEFIMAKDELSGADIKAICTEAG 401 (438)
T ss_pred eEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCC-cCcCHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999988765432 3346889999999999999999999999
Q ss_pred HHHhhccccCCccccccccccccccccccccccc
Q 002386 790 HAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEF 823 (929)
Q Consensus 790 ~~a~~r~~~~~~~~~~~~~~~lt~edf~~al~~~ 823 (929)
..|+++ +...++.+||.+|++..
T Consensus 402 ~~Alr~-----------~r~~Vt~~D~~~A~~~v 424 (438)
T PTZ00361 402 LLALRE-----------RRMKVTQADFRKAKEKV 424 (438)
T ss_pred HHHHHh-----------cCCccCHHHHHHHHHHH
Confidence 999876 33579999999988764
No 28
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.5e-28 Score=250.77 Aligned_cols=247 Identities=19% Similarity=0.245 Sum_probs=207.7
Q ss_pred CccccccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEE
Q 002386 548 GFDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFV 627 (929)
Q Consensus 548 ~~~~~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V 627 (929)
..+.+.++++|..++++.+.+. +-++..+++.|.++|+.+|.++|+|||||||||.+||++|.+.. +.|+.|
T Consensus 171 kpdvty~dvggckeqieklrev--ve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtd------acfirv 242 (435)
T KOG0729|consen 171 KPDVTYSDVGGCKEQIEKLREV--VELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTD------ACFIRV 242 (435)
T ss_pred CCCcccccccchHHHHHHHHHH--HhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccC------ceEEee
Confidence 3466788999999999999884 45677789999999999999999999999999999999999876 889999
Q ss_pred eccccccCchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCC
Q 002386 628 CCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGI 707 (929)
Q Consensus 628 ~~s~L~~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~ 707 (929)
-.++|..+++|+....++++|+.|+..+.||+|+||+|.+.+.+-+......++..+.+++ |...+|++.. +
T Consensus 243 igselvqkyvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmle-li~qldgfdp-------r 314 (435)
T KOG0729|consen 243 IGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLE-LINQLDGFDP-------R 314 (435)
T ss_pred hhHHHHHHHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHH-HHHhccCCCC-------C
Confidence 9999999999999999999999999999999999999999876655544444444433333 4555676654 3
Q ss_pred CcEEEEEecCCCCccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhhcccccCH-HHHHHHHhhcCCCChhhHHHHHH
Q 002386 708 GPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSD-EILLDVASKCDGYDAYDLEILVD 786 (929)
Q Consensus 708 ~~VivIattn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~d-~~l~~LA~~teG~s~~DL~~Lv~ 786 (929)
+++-++.+||+++.|||+|+||||+++.++|..||.+.|..||+.+.+. +.+.. .-++.+|..|..-++++|+.+|.
T Consensus 315 gnikvlmatnrpdtldpallrpgrldrkvef~lpdlegrt~i~kihaks--msverdir~ellarlcpnstgaeirsvct 392 (435)
T KOG0729|consen 315 GNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKS--MSVERDIRFELLARLCPNSTGAEIRSVCT 392 (435)
T ss_pred CCeEEEeecCCCCCcCHhhcCCcccccceeccCCcccccceeEEEeccc--cccccchhHHHHHhhCCCCcchHHHHHHH
Confidence 5799999999999999999999999999999999999999999976654 33333 34888999999999999999999
Q ss_pred HHHHHHhhccccCCccccccccccccccccccccccc
Q 002386 787 RTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEF 823 (929)
Q Consensus 787 ~A~~~a~~r~~~~~~~~~~~~~~~lt~edf~~al~~~ 823 (929)
.|.+.|++.. +...|..||..|....
T Consensus 393 eagmfairar-----------rk~atekdfl~av~kv 418 (435)
T KOG0729|consen 393 EAGMFAIRAR-----------RKVATEKDFLDAVNKV 418 (435)
T ss_pred HhhHHHHHHH-----------hhhhhHHHHHHHHHHH
Confidence 9999998742 2457888888876653
No 29
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.95 E-value=5.9e-28 Score=297.06 Aligned_cols=259 Identities=22% Similarity=0.319 Sum_probs=214.3
Q ss_pred cccccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEec
Q 002386 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (929)
Q Consensus 550 ~~~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~ 629 (929)
..++.+++|++..++.+.+.+ .++..+++++..+++.+++++|||||||||||++|+++|.+++ .+++.+.+
T Consensus 449 ~~~~~di~g~~~~k~~l~~~v--~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~------~~fi~v~~ 520 (733)
T TIGR01243 449 NVRWSDIGGLEEVKQELREAV--EWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESG------ANFIAVRG 520 (733)
T ss_pred ccchhhcccHHHHHHHHHHHH--HhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcC------CCEEEEeh
Confidence 346778999999999998844 4456678899999999999999999999999999999999988 78999999
Q ss_pred cccccCchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCCCc
Q 002386 630 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (929)
Q Consensus 630 s~L~~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (929)
+++.+.++++.++.++.+|..|+..+|+||||||+|.+++.++... ......++...|+..|+++... .+
T Consensus 521 ~~l~~~~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~---~~~~~~~~~~~lL~~ldg~~~~-------~~ 590 (733)
T TIGR01243 521 PEILSKWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARF---DTSVTDRIVNQLLTEMDGIQEL-------SN 590 (733)
T ss_pred HHHhhcccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCC---CccHHHHHHHHHHHHhhcccCC-------CC
Confidence 9999999999999999999999999999999999999997443221 2234467888888888876532 25
Q ss_pred EEEEEecCCCCccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhhcccccCHHHHHHHHhhcCCCChhhHHHHHHHHH
Q 002386 710 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTV 789 (929)
Q Consensus 710 VivIattn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~d~~l~~LA~~teG~s~~DL~~Lv~~A~ 789 (929)
++||+|||+++.+|++++|+|||+..+++++|+.++|.+||+.+.++..+. ++..+..+|..|+||+++||..+|++|.
T Consensus 591 v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~-~~~~l~~la~~t~g~sgadi~~~~~~A~ 669 (733)
T TIGR01243 591 VVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLA-EDVDLEELAEMTEGYTGADIEAVCREAA 669 (733)
T ss_pred EEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCC-ccCCHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999877654332 3345899999999999999999999999
Q ss_pred HHHhhccccCCcc--cc-----ccccccccccccccccccccccc
Q 002386 790 HAAVGRYLHSDSS--FE-----KHIKPTLVRDDFSQAMHEFLPVA 827 (929)
Q Consensus 790 ~~a~~r~~~~~~~--~~-----~~~~~~lt~edf~~al~~~~P~s 827 (929)
..++++....... .. ......++++||.++++...|+.
T Consensus 670 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~al~~~~ps~ 714 (733)
T TIGR01243 670 MAALRESIGSPAKEKLEVGEEEFLKDLKVEMRHFLEALKKVKPSV 714 (733)
T ss_pred HHHHHHHhhhccchhhhcccccccccCcccHHHHHHHHHHcCCCC
Confidence 9998875421110 00 11224689999999998887754
No 30
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=7.7e-28 Score=284.34 Aligned_cols=248 Identities=24% Similarity=0.348 Sum_probs=213.9
Q ss_pred cccccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEec
Q 002386 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (929)
Q Consensus 550 ~~~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~ 629 (929)
...+.+++|++..++.+.+.+. .+..+++.|...++++++++|||||||||||++|+++|.+++ .+|+.+..
T Consensus 238 ~v~~~diggl~~~k~~l~e~v~--~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~------~~fi~v~~ 309 (494)
T COG0464 238 DVTLDDIGGLEEAKEELKEAIE--TPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESR------SRFISVKG 309 (494)
T ss_pred CcceehhhcHHHHHHHHHHHHH--hHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCC------CeEEEeeC
Confidence 4567788888888888888554 344566778888899999999999999999999999999988 88999999
Q ss_pred cccccCchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCCCc
Q 002386 630 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (929)
Q Consensus 630 s~L~~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (929)
+++.+++++++++.++.+|..|+..+|+||||||+|.+++.++...+. ...++...|+..|++..... +
T Consensus 310 ~~l~sk~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~----~~~r~~~~lL~~~d~~e~~~-------~ 378 (494)
T COG0464 310 SELLSKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDG----SGRRVVGQLLTELDGIEKAE-------G 378 (494)
T ss_pred HHHhccccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCch----HHHHHHHHHHHHhcCCCccC-------c
Confidence 999999999999999999999999999999999999999755443322 12578888888888766543 5
Q ss_pred EEEEEecCCCCccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhhcccc-cCHHHHHHHHhhcCCCChhhHHHHHHHH
Q 002386 710 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLE-CSDEILLDVASKCDGYDAYDLEILVDRT 788 (929)
Q Consensus 710 VivIattn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~-~~d~~l~~LA~~teG~s~~DL~~Lv~~A 788 (929)
|++|++||+++.+|+++.|+|||+..+++++||.++|.+|++.++...... ..+.++..++..|+||+++||..+|++|
T Consensus 379 v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea 458 (494)
T COG0464 379 VLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREA 458 (494)
T ss_pred eEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999865553 4566789999999999999999999999
Q ss_pred HHHHhhccccCCcccccccccccccccccccccccccc
Q 002386 789 VHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLPV 826 (929)
Q Consensus 789 ~~~a~~r~~~~~~~~~~~~~~~lt~edf~~al~~~~P~ 826 (929)
...++.+.. ...++.+||..|++...|+
T Consensus 459 ~~~~~~~~~----------~~~~~~~~~~~a~~~~~p~ 486 (494)
T COG0464 459 ALEALREAR----------RREVTLDDFLDALKKIKPS 486 (494)
T ss_pred HHHHHHHhc----------cCCccHHHHHHHHHhcCCC
Confidence 999988731 3569999999999987665
No 31
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=4.9e-28 Score=290.19 Aligned_cols=354 Identities=23% Similarity=0.322 Sum_probs=261.7
Q ss_pred cccccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEec
Q 002386 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (929)
Q Consensus 550 ~~~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~ 629 (929)
...|++++|++..++++.+ .++++..+++.|..+++.+|+++|+|||||||||..|+++|..+....... .|..-..
T Consensus 261 ~v~fd~vggl~~~i~~LKE--mVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~ki-sffmrkg 337 (1080)
T KOG0732|consen 261 SVGFDSVGGLENYINQLKE--MVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKI-SFFMRKG 337 (1080)
T ss_pred ccCccccccHHHHHHHHHH--HHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhccccccc-chhhhcC
Confidence 4567899999999999999 567777889999999999999999999999999999999999986544332 2333455
Q ss_pred cccccCchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCCCc
Q 002386 630 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (929)
Q Consensus 630 s~L~~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (929)
.+..++|+|+.+..++.+|++|+.++|+|+|+||||-|++.++.... .....+...|+.+|+++..+ +.
T Consensus 338 aD~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskqE----qih~SIvSTLLaLmdGldsR-------gq 406 (1080)
T KOG0732|consen 338 ADCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQE----QIHASIVSTLLALMDGLDSR-------GQ 406 (1080)
T ss_pred chhhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchHH----HhhhhHHHHHHHhccCCCCC-------Cc
Confidence 66779999999999999999999999999999999999986644322 22347888899999987755 36
Q ss_pred EEEEEecCCCCccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhhcccccCHHHHHHHHhhcCCCChhhHHHHHHHHH
Q 002386 710 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTV 789 (929)
Q Consensus 710 VivIattn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~d~~l~~LA~~teG~s~~DL~~Lv~~A~ 789 (929)
|++|++||+++.++++|+|||||++.++|+.|+.+.|.+|+..+-.+..-.+....+..+|..|.||.++||+.||..|+
T Consensus 407 VvvigATnRpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLCTeAa 486 (1080)
T KOG0732|consen 407 VVVIGATNRPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALCTEAA 486 (1080)
T ss_pred eEEEcccCCccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999988777666778888999999999999999999999999
Q ss_pred HHHhhccccC-----Cccccccccccccccccccccccccccccccc-cccccCCCCCcc--------CCCCCc---hhh
Q 002386 790 HAAVGRYLHS-----DSSFEKHIKPTLVRDDFSQAMHEFLPVAMRDI-TKTSAEGGRSGW--------DDVGGL---TDI 852 (929)
Q Consensus 790 ~~a~~r~~~~-----~~~~~~~~~~~lt~edf~~al~~~~P~slr~v-~l~~~~~~~~~w--------~dIgGL---~~v 852 (929)
..++.+..+. +..........+...||..|+....|++-|+. ....|-...... ..+-|+ ..+
T Consensus 487 l~~~~r~~Pq~y~s~~kl~~d~~~ikV~~~~f~~A~~~i~ps~~R~~~~~s~Pl~~~~~~ll~~~~~~~~iq~~~~va~~ 566 (1080)
T KOG0732|consen 487 LIALRRSFPQIYSSSDKLLIDVALIKVEVRDFVEAMSRITPSSRRSSVIFSRPLSTYLKPLLPFQDALEDIQGLMDVASS 566 (1080)
T ss_pred hhhhccccCeeecccccccccchhhhhhhHhhhhhhhccCCCCCccccCCCCCCCcceecccchHHHHHHhhcchhHHhh
Confidence 9998875421 11111122244788999999999999887752 223332111111 001111 111
Q ss_pred HHHHHHHHhcCCC-chhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHH-cCCceEEEecccccccc
Q 002386 853 QNAIKEMIELPSK-FPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAA-CSLRFISVKGPELLNKY 918 (929)
Q Consensus 853 k~~L~e~le~p~k-~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e-~glnfIsVkg~ELl~ky 918 (929)
...+.+...|-.+ |...| ..++-.+-.+|+.|..|.|=+.+..||-+. +|++..+..-+.|+.--
T Consensus 567 ~~k~~e~~~~~v~~~e~~~-~i~lic~~~lli~~~~~~g~~~lg~aIlh~~~~~~v~s~~issll~d~ 633 (1080)
T KOG0732|consen 567 MAKIEEHLKLLVRSFESNF-AIRLICRPRLLINGGKGSGQDYLGPAILHRLEGLPVQSLDISSLLSDE 633 (1080)
T ss_pred hhhHHHHhHHHHHhhhccc-chhhhcCcHHhcCCCcccccCcccHHHHHHHhccchHHHHHHHHHhcc
Confidence 1111111111111 11100 122223334677799999999999987754 47777776666666543
No 32
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.95 E-value=4.7e-27 Score=276.97 Aligned_cols=246 Identities=22% Similarity=0.334 Sum_probs=201.6
Q ss_pred cccccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEec
Q 002386 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (929)
Q Consensus 550 ~~~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~ 629 (929)
..++++++|++..++++.+.+..+ ..++.+...+.++++++||+||||||||++|+++|.+++ .+++++++
T Consensus 51 ~~~~~di~g~~~~k~~l~~~~~~l---~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~------~~~~~i~~ 121 (495)
T TIGR01241 51 KVTFKDVAGIDEAKEELMEIVDFL---KNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAG------VPFFSISG 121 (495)
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHH---HCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcC------CCeeeccH
Confidence 456789999999999888755442 356678888899999999999999999999999999987 78899999
Q ss_pred cccccCchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCCCc
Q 002386 630 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (929)
Q Consensus 630 s~L~~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (929)
+++...+.+...+.++++|..|...+|+||||||+|.+++.+...... .........+.|+..||++.... +
T Consensus 122 ~~~~~~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~-~~~~~~~~~~~lL~~~d~~~~~~-------~ 193 (495)
T TIGR01241 122 SDFVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGG-GNDEREQTLNQLLVEMDGFGTNT-------G 193 (495)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCC-ccHHHHHHHHHHHhhhccccCCC-------C
Confidence 888877777778889999999999999999999999998644432211 12233466677778788765432 5
Q ss_pred EEEEEecCCCCccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhhcccccCHHHHHHHHhhcCCCChhhHHHHHHHHH
Q 002386 710 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTV 789 (929)
Q Consensus 710 VivIattn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~d~~l~~LA~~teG~s~~DL~~Lv~~A~ 789 (929)
++||+|||+++.+|++++|++||+..++++.|+.++|.+|++.++...... ++..+..+|..|.||+++||+.+|++|.
T Consensus 194 v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~-~~~~l~~la~~t~G~sgadl~~l~~eA~ 272 (495)
T TIGR01241 194 VIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLA-PDVDLKAVARRTPGFSGADLANLLNEAA 272 (495)
T ss_pred eEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCC-cchhHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998765443 4556889999999999999999999998
Q ss_pred HHHhhccccCCcccccccccccccccccccccccc
Q 002386 790 HAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFL 824 (929)
Q Consensus 790 ~~a~~r~~~~~~~~~~~~~~~lt~edf~~al~~~~ 824 (929)
..+.++ ....++.+||..|+....
T Consensus 273 ~~a~~~-----------~~~~i~~~~l~~a~~~~~ 296 (495)
T TIGR01241 273 LLAARK-----------NKTEITMNDIEEAIDRVI 296 (495)
T ss_pred HHHHHc-----------CCCCCCHHHHHHHHHHHh
Confidence 777654 224578888888877653
No 33
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=7.4e-27 Score=270.25 Aligned_cols=248 Identities=21% Similarity=0.311 Sum_probs=213.8
Q ss_pred CccccccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEE
Q 002386 548 GFDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFV 627 (929)
Q Consensus 548 ~~~~~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V 627 (929)
....++.++.|.++.++++.+-+..+.. +.-|..+|...|+|+||+||||||||+|||++|.+.+ .+|..+
T Consensus 144 ~~~v~F~DVAG~dEakeel~EiVdfLk~---p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~------VPFf~i 214 (596)
T COG0465 144 QVKVTFADVAGVDEAKEELSELVDFLKN---PKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAG------VPFFSI 214 (596)
T ss_pred ccCcChhhhcCcHHHHHHHHHHHHHHhC---chhhHhcccccccceeEecCCCCCcHHHHHHHhcccC------CCceec
Confidence 3566788999999999999886655544 5578889999999999999999999999999999988 899999
Q ss_pred eccccccCchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCC
Q 002386 628 CCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGI 707 (929)
Q Consensus 628 ~~s~L~~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~ 707 (929)
+.+++....++.-...++++|.+|..++|||+||||+|.+...+....+. .+....+.+++|+..||++....
T Consensus 215 SGS~FVemfVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~Gg-gnderEQTLNQlLvEmDGF~~~~------ 287 (596)
T COG0465 215 SGSDFVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGG-GNDEREQTLNQLLVEMDGFGGNE------ 287 (596)
T ss_pred cchhhhhhhcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCC-CchHHHHHHHHHHhhhccCCCCC------
Confidence 99999988888888999999999999999999999999998766544333 44556688999999999987432
Q ss_pred CcEEEEEecCCCCccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhhcccccCHHHHHHHHhhcCCCChhhHHHHHHH
Q 002386 708 GPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDR 787 (929)
Q Consensus 708 ~~VivIattn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~d~~l~~LA~~teG~s~~DL~~Lv~~ 787 (929)
+|+++++||+++-+|++|+|||||++.|.++.||...|.+|++.+++...+. .+..+..+|+.|.||+++||.+++..
T Consensus 288 -gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~-~~Vdl~~iAr~tpGfsGAdL~nl~NE 365 (596)
T COG0465 288 -GVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLA-EDVDLKKIARGTPGFSGADLANLLNE 365 (596)
T ss_pred -ceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCC-CcCCHHHHhhhCCCcccchHhhhHHH
Confidence 5999999999999999999999999999999999999999999888876655 44457779999999999999999999
Q ss_pred HHHHHhhccccCCcccccccccccccccccccccccc
Q 002386 788 TVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFL 824 (929)
Q Consensus 788 A~~~a~~r~~~~~~~~~~~~~~~lt~edf~~al~~~~ 824 (929)
|+..+.++ ....+++.||.+|.....
T Consensus 366 Aal~aar~-----------n~~~i~~~~i~ea~drv~ 391 (596)
T COG0465 366 AALLAARR-----------NKKEITMRDIEEAIDRVI 391 (596)
T ss_pred HHHHHHHh-----------cCeeEeccchHHHHHHHh
Confidence 99988887 335688888888776644
No 34
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.94 E-value=2.4e-26 Score=265.62 Aligned_cols=195 Identities=21% Similarity=0.314 Sum_probs=159.6
Q ss_pred cccccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCc----cceeeEE
Q 002386 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHK----DLVAHIV 625 (929)
Q Consensus 550 ~~~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~----~~~~~~~ 625 (929)
..++.+++|++..++++.+.+. ++..++++|..+++++++++|||||||||||++|+++|+++.... .....++
T Consensus 178 ~v~~~dIgGl~~~i~~i~~~v~--lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl 255 (512)
T TIGR03689 178 DVTYADIGGLDSQIEQIRDAVE--LPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFL 255 (512)
T ss_pred CCCHHHcCChHHHHHHHHHHHH--HHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEE
Confidence 4567889999999999999664 455578899999999999999999999999999999999986431 1123455
Q ss_pred EEeccccccCchhhHHHHHHHHHHHHHhc----CCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccc
Q 002386 626 FVCCSRLSLEKGPIIRQALSNFISEALDH----APSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKR 701 (929)
Q Consensus 626 ~V~~s~L~~~~~~~~~~~l~~~f~~a~~~----~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~ 701 (929)
.+..+++.+.+.++.++.++.+|+.+... .|+||||||+|.+++.+... .++.....+...|+..||++...
T Consensus 256 ~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~---~s~d~e~~il~~LL~~LDgl~~~- 331 (512)
T TIGR03689 256 NIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSG---VSSDVETTVVPQLLSELDGVESL- 331 (512)
T ss_pred eccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCC---ccchHHHHHHHHHHHHhcccccC-
Confidence 66667788888888888899999888653 69999999999998644322 12223456778888888876543
Q ss_pred cCccCCCcEEEEEecCCCCccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhh
Q 002386 702 KSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQR 756 (929)
Q Consensus 702 ~~~~~~~~VivIattn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~ 756 (929)
+++++|+|||+++.||++++|||||+.+|+|++|+.++|.+||+.++..
T Consensus 332 ------~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~ 380 (512)
T TIGR03689 332 ------DNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD 380 (512)
T ss_pred ------CceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc
Confidence 2599999999999999999999999999999999999999999998874
No 35
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.94 E-value=1.8e-26 Score=262.07 Aligned_cols=245 Identities=24% Similarity=0.340 Sum_probs=197.4
Q ss_pred cccccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEec
Q 002386 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (929)
Q Consensus 550 ~~~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~ 629 (929)
...+.+++|++.+++++.+.+. ++..+++.+..+|+.++.++||+||||||||++|+++|++++ .+++.+.+
T Consensus 118 ~~~~~di~Gl~~~~~~l~~~i~--~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~------~~~~~v~~ 189 (364)
T TIGR01242 118 NVSYEDIGGLEEQIREIREAVE--LPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETN------ATFIRVVG 189 (364)
T ss_pred CCCHHHhCChHHHHHHHHHHHH--HHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCC------CCEEecch
Confidence 4456789999999999998664 344567889999999999999999999999999999999987 66778888
Q ss_pred cccccCchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCCCc
Q 002386 630 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (929)
Q Consensus 630 s~L~~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (929)
..+...+.+.....++.+|..+....|+||||||+|.++..+.+....... .....+..++..++++... ++
T Consensus 190 ~~l~~~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~-~~~~~l~~ll~~ld~~~~~-------~~ 261 (364)
T TIGR01242 190 SELVRKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDR-EVQRTLMQLLAELDGFDPR-------GN 261 (364)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccH-HHHHHHHHHHHHhhCCCCC-------CC
Confidence 888777788888889999999999999999999999998644332222122 2223333444445544322 25
Q ss_pred EEEEEecCCCCccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhhcccccCHHHHHHHHhhcCCCChhhHHHHHHHHH
Q 002386 710 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTV 789 (929)
Q Consensus 710 VivIattn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~d~~l~~LA~~teG~s~~DL~~Lv~~A~ 789 (929)
+.+|+|||+++.+|+++++++||+..++++.|+.++|.+|++.++....+. .+..+..++..|+||+++||..+|+.|.
T Consensus 262 v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~-~~~~~~~la~~t~g~sg~dl~~l~~~A~ 340 (364)
T TIGR01242 262 VKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLA-EDVDLEAIAKMTEGASGADLKAICTEAG 340 (364)
T ss_pred EEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCC-ccCCHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999887654432 2245889999999999999999999999
Q ss_pred HHHhhccccCCcccccccccccccccccccccc
Q 002386 790 HAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHE 822 (929)
Q Consensus 790 ~~a~~r~~~~~~~~~~~~~~~lt~edf~~al~~ 822 (929)
+.|+++ +...++.+||.+|+..
T Consensus 341 ~~a~~~-----------~~~~i~~~d~~~a~~~ 362 (364)
T TIGR01242 341 MFAIRE-----------ERDYVTMDDFIKAVEK 362 (364)
T ss_pred HHHHHh-----------CCCccCHHHHHHHHHH
Confidence 999876 3357999999988764
No 36
>CHL00176 ftsH cell division protein; Validated
Probab=99.94 E-value=2.3e-26 Score=274.24 Aligned_cols=245 Identities=20% Similarity=0.318 Sum_probs=200.2
Q ss_pred cccccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEec
Q 002386 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (929)
Q Consensus 550 ~~~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~ 629 (929)
...+++++|++..++++.+.+..+. .++.+..++...++++||+||||||||++|+++|.+++ .++++++|
T Consensus 179 ~~~f~dv~G~~~~k~~l~eiv~~lk---~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~------~p~i~is~ 249 (638)
T CHL00176 179 GITFRDIAGIEEAKEEFEEVVSFLK---KPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAE------VPFFSISG 249 (638)
T ss_pred CCCHHhccChHHHHHHHHHHHHHHh---CHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC------CCeeeccH
Confidence 3467789999999988877554433 35567788889999999999999999999999999987 78999999
Q ss_pred cccccCchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCCCc
Q 002386 630 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (929)
Q Consensus 630 s~L~~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (929)
+++.....+.....++.+|..|....|+||||||+|.+...+....+. ......+.+..|+..||++.... +
T Consensus 250 s~f~~~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~-~~~e~~~~L~~LL~~~dg~~~~~-------~ 321 (638)
T CHL00176 250 SEFVEMFVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGG-GNDEREQTLNQLLTEMDGFKGNK-------G 321 (638)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCC-CcHHHHHHHHHHHhhhccccCCC-------C
Confidence 988776667677789999999999999999999999998644332222 22334466677777787765332 5
Q ss_pred EEEEEecCCCCccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhhcccccCHHHHHHHHhhcCCCChhhHHHHHHHHH
Q 002386 710 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTV 789 (929)
Q Consensus 710 VivIattn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~d~~l~~LA~~teG~s~~DL~~Lv~~A~ 789 (929)
+++|++||+++.+|++++|+|||+.++.++.|+.++|.+||+.+++...+ .++..+..+|..|.||+++||+.++++|+
T Consensus 322 ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~-~~d~~l~~lA~~t~G~sgaDL~~lvneAa 400 (638)
T CHL00176 322 VIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKL-SPDVSLELIARRTPGFSGADLANLLNEAA 400 (638)
T ss_pred eeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhccc-chhHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999887433 34567899999999999999999999998
Q ss_pred HHHhhccccCCccccccccccccccccccccccc
Q 002386 790 HAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEF 823 (929)
Q Consensus 790 ~~a~~r~~~~~~~~~~~~~~~lt~edf~~al~~~ 823 (929)
..+.++ +...++.+||..|+.++
T Consensus 401 l~a~r~-----------~~~~It~~dl~~Ai~rv 423 (638)
T CHL00176 401 ILTARR-----------KKATITMKEIDTAIDRV 423 (638)
T ss_pred HHHHHh-----------CCCCcCHHHHHHHHHHH
Confidence 777655 23568888888887664
No 37
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.93 E-value=3.9e-26 Score=283.41 Aligned_cols=213 Identities=17% Similarity=0.184 Sum_probs=172.9
Q ss_pred hhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccccccCc-------------------------
Q 002386 582 FSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEK------------------------- 636 (929)
Q Consensus 582 ~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~~~~------------------------- 636 (929)
..++|+.+|+||||+||||||||+||||+|.+.+ .+++.|+++++...+
T Consensus 1622 slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~------VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~ 1695 (2281)
T CHL00206 1622 SLRLALSPSRGILVIGSIGTGRSYLVKYLATNSY------VPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDR 1695 (2281)
T ss_pred HHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcC------CceEEEEHHHHhhccccccccccccccccccccccccccc
Confidence 4567889999999999999999999999999988 889999988877432
Q ss_pred ----------------h--hhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhc
Q 002386 637 ----------------G--PIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG 698 (929)
Q Consensus 637 ----------------~--~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~ 698 (929)
. +..+..++.+|+.|+..+||||||||||.+... +. ....+.+|+..|++..
T Consensus 1696 ~~~~e~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~--ds--------~~ltL~qLLneLDg~~ 1765 (2281)
T CHL00206 1696 DLDTELLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVN--ES--------NYLSLGLLVNSLSRDC 1765 (2281)
T ss_pred ccchhhhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCC--cc--------ceehHHHHHHHhcccc
Confidence 1 111234788999999999999999999999742 10 1123567777787653
Q ss_pred ccccCccCCCcEEEEEecCCCCccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhhcccccCH--HHHHHHHhhcCCC
Q 002386 699 EKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSD--EILLDVASKCDGY 776 (929)
Q Consensus 699 ~~~~~~~~~~~VivIattn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~d--~~l~~LA~~teG~ 776 (929)
.. +...+|+||||||+++.|||||+|||||++.|+++.|+..+|++++..++..+++.+.+ .++..+|..|.||
T Consensus 1766 ~~----~s~~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~Gf 1841 (2281)
T CHL00206 1766 ER----CSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGS 1841 (2281)
T ss_pred cc----CCCCCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCC
Confidence 21 11236999999999999999999999999999999999999999988765555555443 3478999999999
Q ss_pred ChhhHHHHHHHHHHHHhhccccCCccccccccccccccccccccccccc
Q 002386 777 DAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLP 825 (929)
Q Consensus 777 s~~DL~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~lt~edf~~al~~~~P 825 (929)
+|+||+++|.+|+..|+++ ++..+++++|..|+.+.+.
T Consensus 1842 SGADLanLvNEAaliAirq-----------~ks~Id~~~I~~Al~Rq~~ 1879 (2281)
T CHL00206 1842 NARDLVALTNEALSISITQ-----------KKSIIDTNTIRSALHRQTW 1879 (2281)
T ss_pred CHHHHHHHHHHHHHHHHHc-----------CCCccCHHHHHHHHHHHHh
Confidence 9999999999999999887 4467899999999988764
No 38
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.93 E-value=3.4e-25 Score=271.85 Aligned_cols=318 Identities=18% Similarity=0.230 Sum_probs=217.7
Q ss_pred ccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCcc----ceeeEEEEe
Q 002386 553 VSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKD----LVAHIVFVC 628 (929)
Q Consensus 553 ~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~----~~~~~~~V~ 628 (929)
++.+.|.+..++.+++.+ . .....++||+||||||||++++++|+.+..... ....++.++
T Consensus 181 l~~~igr~~ei~~~~~~L----~-----------~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~ 245 (731)
T TIGR02639 181 IDPLIGREDELERTIQVL----C-----------RRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLD 245 (731)
T ss_pred CCcccCcHHHHHHHHHHH----h-----------cCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEec
Confidence 456778888887766533 1 112357999999999999999999999843211 126688888
Q ss_pred ccccc--cCchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccC
Q 002386 629 CSRLS--LEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCG 706 (929)
Q Consensus 629 ~s~L~--~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~ 706 (929)
+..+. ..+.++.++.++.+|+++.++.|.||||||+|.|++.....++ . ....+.|...+..
T Consensus 246 ~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~---~---~~~~~~L~~~l~~---------- 309 (731)
T TIGR02639 246 MGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGG---S---MDASNLLKPALSS---------- 309 (731)
T ss_pred HHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCc---c---HHHHHHHHHHHhC----------
Confidence 88876 4677899999999999998888999999999999853321111 1 1233445444432
Q ss_pred CCcEEEEEecCCCC-----ccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhh----cccccCHHHHHHHHhhcCCCC
Q 002386 707 IGPIAFVASAQSLE-----KIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQR----RSLECSDEILLDVASKCDGYD 777 (929)
Q Consensus 707 ~~~VivIattn~~~-----~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~----~~~~~~d~~l~~LA~~teG~s 777 (929)
+.+.+|++|+..+ ..|++|.| ||. .|+++.|+.+++.+||+..... .++.++++.+..++..+..|-
T Consensus 310 -g~i~~IgaTt~~e~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi 385 (731)
T TIGR02639 310 -GKLRCIGSTTYEEYKNHFEKDRALSR--RFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYI 385 (731)
T ss_pred -CCeEEEEecCHHHHHHHhhhhHHHHH--hCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhccc
Confidence 2588999998633 47899999 998 7999999999999999976654 345689999999999887776
Q ss_pred hhh-----HHHHHHHHHHHHhhccccCCcccccccccccccccccccccccccccccccccccc----CCCCCccCCCCC
Q 002386 778 AYD-----LEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLPVAMRDITKTSA----EGGRSGWDDVGG 848 (929)
Q Consensus 778 ~~D-----L~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~lt~edf~~al~~~~P~slr~v~l~~~----~~~~~~w~dIgG 848 (929)
+.. .-.+++.|......+. .......++.+|+.+++..++......+..... .....-...|.|
T Consensus 386 ~~r~~P~kai~lld~a~a~~~~~~-------~~~~~~~v~~~~i~~~i~~~tgiP~~~~~~~~~~~l~~l~~~l~~~v~G 458 (731)
T TIGR02639 386 NDRFLPDKAIDVIDEAGASFRLRP-------KAKKKANVSVKDIENVVAKMAHIPVKTVSVDDREKLKNLEKNLKAKIFG 458 (731)
T ss_pred ccccCCHHHHHHHHHhhhhhhcCc-------ccccccccCHHHHHHHHHHHhCCChhhhhhHHHHHHHHHHHHHhcceeC
Confidence 542 2345555543221110 001234688889988888765322211110000 000122445678
Q ss_pred chhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHcCCceEEEecccccc
Q 002386 849 LTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLN 916 (929)
Q Consensus 849 L~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~glnfIsVkg~ELl~ 916 (929)
++++.+.+.+.+.+.. .--.-+-++...+||+||||||||++|+++|+.++.+|+.++++|+..
T Consensus 459 Q~~ai~~l~~~i~~~~----~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~ 522 (731)
T TIGR02639 459 QDEAIDSLVSSIKRSR----AGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYME 522 (731)
T ss_pred cHHHHHHHHHHHHHHh----cCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhh
Confidence 8888888877765320 000112345556899999999999999999999999999999998743
No 39
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=5.3e-25 Score=245.43 Aligned_cols=258 Identities=19% Similarity=0.259 Sum_probs=207.0
Q ss_pred ccccccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEe
Q 002386 549 FDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVC 628 (929)
Q Consensus 549 ~~~~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~ 628 (929)
....+.++.|++.+...+.+ ..+++...+.+|..+.-+ .+++||.||||+|||+|++|+|.+.+ +.|..++
T Consensus 148 ~~v~~~di~gl~~~k~~l~e--~vi~p~lr~d~F~glr~p-~rglLLfGPpgtGKtmL~~aiAsE~~------atff~iS 218 (428)
T KOG0740|consen 148 RNVGWDDIAGLEDAKQSLKE--AVILPLLRPDLFLGLREP-VRGLLLFGPPGTGKTMLAKAIATESG------ATFFNIS 218 (428)
T ss_pred CcccccCCcchhhHHHHhhh--hhhhcccchHhhhccccc-cchhheecCCCCchHHHHHHHHhhhc------ceEeecc
Confidence 34456677788888888877 556777778888887544 56799999999999999999999998 8899999
Q ss_pred ccccccCchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCCC
Q 002386 629 CSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIG 708 (929)
Q Consensus 629 ~s~L~~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~ 708 (929)
.+.|.++++|+.++.++.+|.-|+..+|+|+|+||+|.++..+.+.++..+ .+...++|.. ++...... -.
T Consensus 219 assLtsK~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~~e~e~s---rr~ktefLiq-~~~~~s~~-----~d 289 (428)
T KOG0740|consen 219 ASSLTSKYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSDNEHESS---RRLKTEFLLQ-FDGKNSAP-----DD 289 (428)
T ss_pred HHHhhhhccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCCcccccc---hhhhhHHHhh-hccccCCC-----CC
Confidence 999999999999999999999999999999999999999987755554332 2234444444 34333222 12
Q ss_pred cEEEEEecCCCCccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhhcccccCHHHHHHHHhhcCCCChhhHHHHHHHH
Q 002386 709 PIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRT 788 (929)
Q Consensus 709 ~VivIattn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~d~~l~~LA~~teG~s~~DL~~Lv~~A 788 (929)
+|++|+|||.++.+|.+++| ||...+++|.|+.+.|..+++.++.+.+..+.+..+..+++.|+||++.|+..+|..|
T Consensus 290 rvlvigaTN~P~e~Dea~~R--rf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~kea 367 (428)
T KOG0740|consen 290 RVLVIGATNRPWELDEAARR--RFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITALCKEA 367 (428)
T ss_pred eEEEEecCCCchHHHHHHHH--HhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHHHHHHh
Confidence 69999999999999999999 9999999999999999999999999887778889999999999999999999999999
Q ss_pred HHHHhhccccC--Ccccccccccccccccccccccccccc
Q 002386 789 VHAAVGRYLHS--DSSFEKHIKPTLVRDDFSQAMHEFLPV 826 (929)
Q Consensus 789 ~~~a~~r~~~~--~~~~~~~~~~~lt~edf~~al~~~~P~ 826 (929)
...-.+..... -........+.++..||..+++...|+
T Consensus 368 ~~~p~r~~~~~~~~~~~~~~~~r~i~~~df~~a~~~i~~~ 407 (428)
T KOG0740|consen 368 AMGPLRELGGTTDLEFIDADKIRPITYPDFKNAFKNIKPS 407 (428)
T ss_pred hcCchhhcccchhhhhcchhccCCCCcchHHHHHHhhccc
Confidence 76554433221 111222334667888888888777664
No 40
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.92 E-value=2e-24 Score=260.59 Aligned_cols=247 Identities=21% Similarity=0.280 Sum_probs=198.3
Q ss_pred CccccccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEE
Q 002386 548 GFDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFV 627 (929)
Q Consensus 548 ~~~~~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V 627 (929)
.....+.++.|.+..++++.+.+..+. .+..+..++...++++||+||||||||++++++|.+++ .+++.+
T Consensus 146 ~~~~~~~di~g~~~~~~~l~~i~~~~~---~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~------~~f~~i 216 (644)
T PRK10733 146 QIKTTFADVAGCDEAKEEVAELVEYLR---EPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAK------VPFFTI 216 (644)
T ss_pred hhhCcHHHHcCHHHHHHHHHHHHHHhh---CHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcC------CCEEEE
Confidence 345567788888888888777554322 34456667778888999999999999999999999988 788999
Q ss_pred eccccccCchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCC
Q 002386 628 CCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGI 707 (929)
Q Consensus 628 ~~s~L~~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~ 707 (929)
+++++.....+.....++++|..+....|+||||||+|.+...+....+. ......+.++.|+..||++....
T Consensus 217 s~~~~~~~~~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g-~~~~~~~~ln~lL~~mdg~~~~~------ 289 (644)
T PRK10733 217 SGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGG-GHDEREQTLNQMLVEMDGFEGNE------ 289 (644)
T ss_pred ehHHhHHhhhcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCC-CchHHHHHHHHHHHhhhcccCCC------
Confidence 99988877777777888999999999999999999999998654432222 22334567777888888875432
Q ss_pred CcEEEEEecCCCCccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhhcccccCHHHHHHHHhhcCCCChhhHHHHHHH
Q 002386 708 GPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDR 787 (929)
Q Consensus 708 ~~VivIattn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~d~~l~~LA~~teG~s~~DL~~Lv~~ 787 (929)
++++|+|||+++.+|++++|+|||++++.++.|+.++|.+||+.++++..+. .+.++..+|..|.||+++||..+|++
T Consensus 290 -~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~-~~~d~~~la~~t~G~sgadl~~l~~e 367 (644)
T PRK10733 290 -GIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLA-PDIDAAIIARGTPGFSGADLANLVNE 367 (644)
T ss_pred -CeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCC-CcCCHHHHHhhCCCCCHHHHHHHHHH
Confidence 5999999999999999999999999999999999999999999999875443 23347789999999999999999999
Q ss_pred HHHHHhhccccCCccccccccccccccccccccccc
Q 002386 788 TVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEF 823 (929)
Q Consensus 788 A~~~a~~r~~~~~~~~~~~~~~~lt~edf~~al~~~ 823 (929)
|...|.++ +...++.+||.+++...
T Consensus 368 Aa~~a~r~-----------~~~~i~~~d~~~a~~~v 392 (644)
T PRK10733 368 AALFAARG-----------NKRVVSMVEFEKAKDKI 392 (644)
T ss_pred HHHHHHHc-----------CCCcccHHHHHHHHHHH
Confidence 99888765 23457777777766543
No 41
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=2.2e-25 Score=233.19 Aligned_cols=244 Identities=19% Similarity=0.294 Sum_probs=195.6
Q ss_pred ccccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEecc
Q 002386 551 SNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCS 630 (929)
Q Consensus 551 ~~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s 630 (929)
.++++++|...++.++++ .+.++...+.+|...|+.+|.+++||||||+|||.+|+++|..++ ..++.+..+
T Consensus 129 ~s~~~~ggl~~qirelre--~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg------~nfl~v~ss 200 (388)
T KOG0651|consen 129 ISFENVGGLFYQIRELRE--VIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMG------VNFLKVVSS 200 (388)
T ss_pred cCHHHhCChHHHHHHHHh--heEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcC------CceEEeeHh
Confidence 457788888888888888 456677788899999999999999999999999999999999999 889999999
Q ss_pred ccccCchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCCCcE
Q 002386 631 RLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPI 710 (929)
Q Consensus 631 ~L~~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V 710 (929)
.+.+++.|+..+.+++.|..|+.+.||+||+||+|.+.+.+ ..++. ...+.+...|.+++++..+.. ..++|
T Consensus 201 ~lv~kyiGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr-~se~T---s~dreiqrTLMeLlnqmdgfd----~l~rV 272 (388)
T KOG0651|consen 201 ALVDKYIGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRR-FSEGT---SSDREIQRTLMELLNQMDGFD----TLHRV 272 (388)
T ss_pred hhhhhhcccHHHHHHHHHHHHhhhCceEEeehhhhhhccEE-ecccc---chhHHHHHHHHHHHHhhccch----hcccc
Confidence 99999999999999999999999999999999999998644 33332 223344555555555443322 22369
Q ss_pred EEEEecCCCCccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhhcccccCHHHHHHHHhhcCCCChhhHHHHHHHHHH
Q 002386 711 AFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVH 790 (929)
Q Consensus 711 ivIattn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~d~~l~~LA~~teG~s~~DL~~Lv~~A~~ 790 (929)
-+|+|+|+++.|+|+|.|+||+++.+++|.|+...|..|++.+.+.... ..+-..+.+....+||.++|+++.|++|-.
T Consensus 273 k~ImatNrpdtLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~-~Geid~eaivK~~d~f~gad~rn~~tEag~ 351 (388)
T KOG0651|consen 273 KTIMATNRPDTLDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDF-HGEIDDEAILKLVDGFNGADLRNVCTEAGM 351 (388)
T ss_pred cEEEecCCccccchhhcCCccccceeccCCcchhhceeeEeeccccccc-cccccHHHHHHHHhccChHHHhhhcccccc
Confidence 9999999999999999999999999999999999999999866543221 122236778888999999999999999987
Q ss_pred HHhhccccCCcccccccccccccccccccccc
Q 002386 791 AAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHE 822 (929)
Q Consensus 791 ~a~~r~~~~~~~~~~~~~~~lt~edf~~al~~ 822 (929)
.++.. ....+..+||..+...
T Consensus 352 Fa~~~-----------~~~~vl~Ed~~k~vrk 372 (388)
T KOG0651|consen 352 FAIPE-----------ERDEVLHEDFMKLVRK 372 (388)
T ss_pred cccch-----------hhHHHhHHHHHHHHHH
Confidence 66654 2244667777766543
No 42
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.91 E-value=2.9e-23 Score=225.77 Aligned_cols=196 Identities=16% Similarity=0.183 Sum_probs=152.5
Q ss_pred cCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccccccCchhhHHHHHHHHHHHHHh-----cCCcEE
Q 002386 585 YHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALD-----HAPSIV 659 (929)
Q Consensus 585 ~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~~~~~~~~~~~l~~~f~~a~~-----~~PsVL 659 (929)
.++.+|.+++||||||||||++|+++|++++ ..++.++..++.+++.|+.++.++++|..|.. .+||||
T Consensus 143 ~~ik~PlgllL~GPPGcGKTllAraiA~elg------~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVL 216 (413)
T PLN00020 143 PNIKVPLILGIWGGKGQGKSFQCELVFKKMG------IEPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCL 216 (413)
T ss_pred cCCCCCeEEEeeCCCCCCHHHHHHHHHHHcC------CCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEE
Confidence 4588899999999999999999999999999 88999999999999999999999999999975 479999
Q ss_pred EEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccc-----CccCCCcEEEEEecCCCCccccccccCCCcce
Q 002386 660 IFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRK-----SSCGIGPIAFVASAQSLEKIPQSLTSSGRFDF 734 (929)
Q Consensus 660 ~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~-----~~~~~~~VivIattn~~~~L~~~L~~~~Rf~~ 734 (929)
||||||.+++.+.. .+.....+.+...|+.+||+...-.- ......+|.||+|||+++.|+++|+|+|||+.
T Consensus 217 FIDEIDA~~g~r~~---~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk 293 (413)
T PLN00020 217 FINDLDAGAGRFGT---TQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEK 293 (413)
T ss_pred EEehhhhcCCCCCC---CCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCCCc
Confidence 99999999975532 22222233445788888886421000 01123469999999999999999999999998
Q ss_pred EeeCCCCcHHHHHHHHHHHHhhcccccCHHHHHHHHhhcCC----CChhhHHHHHHHHHHHHh
Q 002386 735 HVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDG----YDAYDLEILVDRTVHAAV 793 (929)
Q Consensus 735 ~i~l~~Pd~~eR~~IL~~~l~~~~~~~~d~~l~~LA~~teG----~s~~DL~~Lv~~A~~~a~ 793 (929)
.+ ..|+.++|.+||+.++++. .++...+..|+..+.| |.++--..+.++++..-+
T Consensus 294 ~i--~lPd~e~R~eIL~~~~r~~--~l~~~dv~~Lv~~f~gq~~Df~GAlrar~yd~~v~~~i 352 (413)
T PLN00020 294 FY--WAPTREDRIGVVHGIFRDD--GVSREDVVKLVDTFPGQPLDFFGALRARVYDDEVRKWI 352 (413)
T ss_pred ee--CCCCHHHHHHHHHHHhccC--CCCHHHHHHHHHcCCCCCchhhhHHHHHHHHHHHHHHH
Confidence 65 5799999999999998865 4556778888888766 334333444555544443
No 43
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.90 E-value=3.9e-23 Score=250.55 Aligned_cols=317 Identities=16% Similarity=0.221 Sum_probs=212.0
Q ss_pred ccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCcc----ceeeEEEEe
Q 002386 553 VSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKD----LVAHIVFVC 628 (929)
Q Consensus 553 ~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~----~~~~~~~V~ 628 (929)
++.+.|.+..++++++.+.. ....++||+||||||||++|+++|..+..... ....++.++
T Consensus 185 ~~~liGR~~ei~~~i~iL~r---------------~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~ 249 (758)
T PRK11034 185 IDPLIGREKELERAIQVLCR---------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLD 249 (758)
T ss_pred CCcCcCCCHHHHHHHHHHhc---------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEecc
Confidence 44677888888888774422 12356899999999999999999987633210 113344444
Q ss_pred ccccc--cCchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccC
Q 002386 629 CSRLS--LEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCG 706 (929)
Q Consensus 629 ~s~L~--~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~ 706 (929)
...+. ..+.++.+..++.+|..+....+.||||||+|.|++.+....+ ...+.+.|...+..
T Consensus 250 ~~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g------~~d~~nlLkp~L~~---------- 313 (758)
T PRK11034 250 IGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGG------QVDAANLIKPLLSS---------- 313 (758)
T ss_pred HHHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCc------HHHHHHHHHHHHhC----------
Confidence 44444 3456788888999999888788899999999999863321111 12344445444432
Q ss_pred CCcEEEEEecCCCC-----ccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhh----cccccCHHHHHHHHhhcCCC-
Q 002386 707 IGPIAFVASAQSLE-----KIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQR----RSLECSDEILLDVASKCDGY- 776 (929)
Q Consensus 707 ~~~VivIattn~~~-----~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~----~~~~~~d~~l~~LA~~teG~- 776 (929)
+.+.+|++|+..+ ..|++|.| ||. .|.++.|+.+++.+||+.+..+ .++.++++.+..++.....|
T Consensus 314 -g~i~vIgATt~~E~~~~~~~D~AL~r--RFq-~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi 389 (758)
T PRK11034 314 -GKIRVIGSTTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYI 389 (758)
T ss_pred -CCeEEEecCChHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccc
Confidence 2589999998764 46999999 997 8999999999999999976543 45668888888777665554
Q ss_pred ----ChhhHHHHHHHHHHHHhhccccCCccccccccccccccccccccccccccccccccccccC----CCCCccCCCCC
Q 002386 777 ----DAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLPVAMRDITKTSAE----GGRSGWDDVGG 848 (929)
Q Consensus 777 ----s~~DL~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~lt~edf~~al~~~~P~slr~v~l~~~~----~~~~~w~dIgG 848 (929)
.|...-.+++.|+... |.... ......++.+|+.+.+...+-.....+...... ....--..|.|
T Consensus 390 ~~r~lPdKaidlldea~a~~--~~~~~-----~~~~~~v~~~~i~~v~~~~tgip~~~~~~~~~~~l~~l~~~L~~~ViG 462 (758)
T PRK11034 390 NDRHLPDKAIDVIDEAGARA--RLMPV-----SKRKKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFG 462 (758)
T ss_pred cCccChHHHHHHHHHHHHhh--ccCcc-----cccccccChhhHHHHHHHHhCCChhhhhhhHHHHHHHHHHHhcceEeC
Confidence 3445667777776432 11110 011235777888887776654322221111100 00011234789
Q ss_pred chhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHcCCceEEEeccccc
Q 002386 849 LTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELL 915 (929)
Q Consensus 849 L~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~glnfIsVkg~ELl 915 (929)
.+++.+.|.+.+..-.. . + .-+-++...+||+||||||||.+|+++|+.++.+|+.++++++.
T Consensus 463 Q~~ai~~l~~~i~~~~~--g-l-~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~ 525 (758)
T PRK11034 463 QDKAIEALTEAIKMSRA--G-L-GHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYM 525 (758)
T ss_pred cHHHHHHHHHHHHHHhc--c-c-cCCCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhc
Confidence 99999999988863211 0 0 01234556799999999999999999999999999999998864
No 44
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.86 E-value=4.6e-21 Score=236.88 Aligned_cols=191 Identities=16% Similarity=0.228 Sum_probs=137.5
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCc----cceeeEEEE
Q 002386 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHK----DLVAHIVFV 627 (929)
Q Consensus 552 ~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~----~~~~~~~~V 627 (929)
+++.+.|.+..+..+++.+ .. ....+++|+||||||||++++.+|+.+.... .....++.+
T Consensus 185 ~ld~~iGr~~ei~~~i~~l---~r------------~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l 249 (852)
T TIGR03345 185 KIDPVLGRDDEIRQMIDIL---LR------------RRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSL 249 (852)
T ss_pred CCCcccCCHHHHHHHHHHH---hc------------CCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEe
Confidence 3456778888766666533 11 1224799999999999999999999985431 112456777
Q ss_pred eccccc--cCchhhHHHHHHHHHHHHHh-cCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCc
Q 002386 628 CCSRLS--LEKGPIIRQALSNFISEALD-HAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSS 704 (929)
Q Consensus 628 ~~s~L~--~~~~~~~~~~l~~~f~~a~~-~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~ 704 (929)
+...+. ..+.++.+..++.+|+++.. ..+.||||||+|.+.+.++. .+.+ ...+.|...+..
T Consensus 250 ~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~-~~~~------d~~n~Lkp~l~~-------- 314 (852)
T TIGR03345 250 DLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQ-AGQG------DAANLLKPALAR-------- 314 (852)
T ss_pred ehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCc-cccc------cHHHHhhHHhhC--------
Confidence 777665 35678888999999998864 46789999999999853321 1111 122344444432
Q ss_pred cCCCcEEEEEecCCCC-----ccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhh----cccccCHHHHHHHHhhcCC
Q 002386 705 CGIGPIAFVASAQSLE-----KIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQR----RSLECSDEILLDVASKCDG 775 (929)
Q Consensus 705 ~~~~~VivIattn~~~-----~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~----~~~~~~d~~l~~LA~~teG 775 (929)
+.+.+|++|+..+ .+|++|.| ||. .|.+++|+.+++.+||+.+... .++.++++.+..++..+.+
T Consensus 315 ---G~l~~IgaTT~~e~~~~~~~d~AL~r--Rf~-~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~r 388 (852)
T TIGR03345 315 ---GELRTIAATTWAEYKKYFEKDPALTR--RFQ-VVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHR 388 (852)
T ss_pred ---CCeEEEEecCHHHHhhhhhccHHHHH--hCe-EEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHccc
Confidence 2488999988643 47999999 997 8999999999999997665543 3467889999999999988
Q ss_pred CCh
Q 002386 776 YDA 778 (929)
Q Consensus 776 ~s~ 778 (929)
|.+
T Consensus 389 yi~ 391 (852)
T TIGR03345 389 YIP 391 (852)
T ss_pred ccc
Confidence 765
No 45
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=2.3e-22 Score=215.27 Aligned_cols=90 Identities=41% Similarity=0.723 Sum_probs=88.4
Q ss_pred CCCccCCCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHcCCceEEEecccccccc
Q 002386 839 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKY 918 (929)
Q Consensus 839 ~~~~w~dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~glnfIsVkg~ELl~ky 918 (929)
+.+.|+|||||++..+.|+|.+++|+++|++|...|+.+|+|+|||||||||||+||+|+|.+.+.+||.|.|+||+.||
T Consensus 146 PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKY 225 (406)
T COG1222 146 PDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKY 225 (406)
T ss_pred CCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHH
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cChhhHHHhh
Q 002386 919 IGASEQAVRR 928 (929)
Q Consensus 919 IG~SEq~VRd 928 (929)
||+.-+-|||
T Consensus 226 iGEGaRlVRe 235 (406)
T COG1222 226 IGEGARLVRE 235 (406)
T ss_pred hccchHHHHH
Confidence 9999999997
No 46
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.86 E-value=1.5e-20 Score=233.48 Aligned_cols=323 Identities=20% Similarity=0.254 Sum_probs=207.8
Q ss_pred ccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCc----cceeeEEEEe
Q 002386 553 VSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHK----DLVAHIVFVC 628 (929)
Q Consensus 553 ~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~----~~~~~~~~V~ 628 (929)
++.+.|.+..++.+++-+. .....+++|+||||||||++|+.+|+.+.... .....++.++
T Consensus 178 ~~~~igr~~ei~~~~~~L~---------------r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~ 242 (821)
T CHL00095 178 LDPVIGREKEIERVIQILG---------------RRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLD 242 (821)
T ss_pred CCCCCCcHHHHHHHHHHHc---------------ccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEee
Confidence 4567788888888877432 22345799999999999999999999985321 1125677888
Q ss_pred ccccc--cCchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccC
Q 002386 629 CSRLS--LEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCG 706 (929)
Q Consensus 629 ~s~L~--~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~ 706 (929)
...+. ..+.++.++.++.+|+++....+.||||||+|.|++.... ++.. .+.+.|...+..
T Consensus 243 ~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~-~g~~------~~a~lLkp~l~r---------- 305 (821)
T CHL00095 243 IGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAA-EGAI------DAANILKPALAR---------- 305 (821)
T ss_pred HHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCC-CCcc------cHHHHhHHHHhC----------
Confidence 87765 4567888999999999998778899999999999863321 1111 233444444432
Q ss_pred CCcEEEEEecCCCC-----ccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhh----cccccCHHHHHHHHhhcCCCC
Q 002386 707 IGPIAFVASAQSLE-----KIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQR----RSLECSDEILLDVASKCDGYD 777 (929)
Q Consensus 707 ~~~VivIattn~~~-----~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~----~~~~~~d~~l~~LA~~teG~s 777 (929)
+.+.+|++|+..+ ..+++|.+ ||. .+.++.|+.++..+|++..... .++.++++.+..++..+.+|.
T Consensus 306 -g~l~~IgaTt~~ey~~~ie~D~aL~r--Rf~-~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi 381 (821)
T CHL00095 306 -GELQCIGATTLDEYRKHIEKDPALER--RFQ-PVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYI 381 (821)
T ss_pred -CCcEEEEeCCHHHHHHHHhcCHHHHh--cce-EEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccC
Confidence 2488899988754 46899999 997 6799999999999998865432 345578999998888888876
Q ss_pred hh-----hHHHHHHHHHHHHhhcc--ccC---------------------Cccc--------------------------
Q 002386 778 AY-----DLEILVDRTVHAAVGRY--LHS---------------------DSSF-------------------------- 803 (929)
Q Consensus 778 ~~-----DL~~Lv~~A~~~a~~r~--~~~---------------------~~~~-------------------------- 803 (929)
+. -.-.+++.|+....... .+. ....
T Consensus 382 ~~r~lPdkaidlld~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (821)
T CHL00095 382 ADRFLPDKAIDLLDEAGSRVRLINSRLPPAARELDKELREILKDKDEAIREQDFETAKQLRDREMEVRAQIAAIIQSKKT 461 (821)
T ss_pred ccccCchHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 53 22234444443221100 000 0000
Q ss_pred ---cccccccccccccccccccccccccccccccccC----CCCCccCCCCCchhhHHHHHHHHhcCCCchhhhhhCCCC
Q 002386 804 ---EKHIKPTLVRDDFSQAMHEFLPVAMRDITKTSAE----GGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLR 876 (929)
Q Consensus 804 ---~~~~~~~lt~edf~~al~~~~P~slr~v~l~~~~----~~~~~w~dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr 876 (929)
.......++.+|+.+.+...+-.....+...... ....--..|.|++++.+.+...+.... .--.-+-+
T Consensus 462 ~~~~~~~~~~v~~~~i~~~~~~~tgip~~~~~~~~~~~l~~l~~~L~~~v~GQ~~ai~~l~~~i~~~~----~gl~~~~~ 537 (821)
T CHL00095 462 EEEKRLEVPVVTEEDIAEIVSAWTGIPVNKLTKSESEKLLHMEETLHKRIIGQDEAVVAVSKAIRRAR----VGLKNPNR 537 (821)
T ss_pred hhcccccCCccCHHHHHHHHHHHHCCCchhhchhHHHHHHHHHHHhcCcCcChHHHHHHHHHHHHHHh----hcccCCCC
Confidence 0001134566666666555543222111111100 000112347789999888887775321 00011334
Q ss_pred CCceeEEecCCCCcHHHHHHHHHHHc---CCceEEEeccccc
Q 002386 877 LRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELL 915 (929)
Q Consensus 877 ~~sGiLLyGpPGtGKT~LA~alA~e~---glnfIsVkg~ELl 915 (929)
+...+||+||||||||++|+++|+.+ +.+|+.++++++.
T Consensus 538 p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~ 579 (821)
T CHL00095 538 PIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYM 579 (821)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhcc
Confidence 44568999999999999999999986 5789999998863
No 47
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.85 E-value=1.2e-20 Score=218.85 Aligned_cols=229 Identities=17% Similarity=0.305 Sum_probs=163.2
Q ss_pred CCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCCCcEEEEEecCCCCccccccccCCCcce
Q 002386 655 APSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDF 734 (929)
Q Consensus 655 ~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~VivIattn~~~~L~~~L~~~~Rf~~ 734 (929)
.|.+++|.|++.++. + . .+...|.++........ ..+|+.+. .-.+|+.|.+ +..
T Consensus 81 ~~~~~vl~d~h~~~~---~------~----~~~r~l~~l~~~~~~~~-------~~~i~~~~--~~~~p~el~~---~~~ 135 (489)
T CHL00195 81 TPALFLLKDFNRFLN---D------I----SISRKLRNLSRILKTQP-------KTIIIIAS--ELNIPKELKD---LIT 135 (489)
T ss_pred CCcEEEEecchhhhc---c------h----HHHHHHHHHHHHHHhCC-------CEEEEEcC--CCCCCHHHHh---cee
Confidence 478999999999872 1 1 23333333332222221 23444433 2457777775 445
Q ss_pred EeeCCCCcHHHHHHHHHHHHhhcccccCHHHHHHHHhhcCCCChhhHHHHHHHHHHHHhhccccCCcccccccccccccc
Q 002386 735 HVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRD 814 (929)
Q Consensus 735 ~i~l~~Pd~~eR~~IL~~~l~~~~~~~~d~~l~~LA~~teG~s~~DL~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~lt~e 814 (929)
.+.+|.|+.+++.++++.+....+..+++..++.++..+.|++..+++.++.++.... ..++.+
T Consensus 136 ~~~~~lP~~~ei~~~l~~~~~~~~~~~~~~~~~~l~~~~~gls~~~~~~~~~~~~~~~----------------~~~~~~ 199 (489)
T CHL00195 136 VLEFPLPTESEIKKELTRLIKSLNIKIDSELLENLTRACQGLSLERIRRVLSKIIATY----------------KTIDEN 199 (489)
T ss_pred EEeecCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc----------------CCCChh
Confidence 7899999999999999988877777889999999999999999999999887754211 112333
Q ss_pred ccccccccccccccccccccccCCCCCccCCCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHH
Q 002386 815 DFSQAMHEFLPVAMRDITKTSAEGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHI 894 (929)
Q Consensus 815 df~~al~~~~P~slr~v~l~~~~~~~~~w~dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~L 894 (929)
++...++.......+...+... .+...|+||||++.+|+.|.+... .++..+.+.+++++.|+|||||||||||++
T Consensus 200 ~~~~i~~~k~q~~~~~~~le~~-~~~~~~~dvgGl~~lK~~l~~~~~---~~~~~~~~~gl~~pkGILL~GPpGTGKTll 275 (489)
T CHL00195 200 SIPLILEEKKQIISQTEILEFY-SVNEKISDIGGLDNLKDWLKKRST---SFSKQASNYGLPTPRGLLLVGIQGTGKSLT 275 (489)
T ss_pred hHHHHHHHHHHHHhhhcccccc-CCCCCHHHhcCHHHHHHHHHHHHH---HhhHHHHhcCCCCCceEEEECCCCCcHHHH
Confidence 3222222211111111111111 134789999999999999987654 345556778899999999999999999999
Q ss_pred HHHHHHHcCCceEEEecccccccccChhhHHHhh
Q 002386 895 VGAAAAACSLRFISVKGPELLNKYIGASEQAVRR 928 (929)
Q Consensus 895 A~alA~e~glnfIsVkg~ELl~kyIG~SEq~VRd 928 (929)
|+++|+++|++|+.+++++++++|+|+||+++|+
T Consensus 276 AkaiA~e~~~~~~~l~~~~l~~~~vGese~~l~~ 309 (489)
T CHL00195 276 AKAIANDWQLPLLRLDVGKLFGGIVGESESRMRQ 309 (489)
T ss_pred HHHHHHHhCCCEEEEEhHHhcccccChHHHHHHH
Confidence 9999999999999999999999999999999985
No 48
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.80 E-value=8.1e-19 Score=190.46 Aligned_cols=222 Identities=18% Similarity=0.195 Sum_probs=158.6
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCchhhhhhcCC---CCCceEEEECCCCcHHHHHHHHHHHHhccCcc-ceeeEEEE
Q 002386 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHL---PLPGHILIHGPPGSGKTSLAKAVAKSLEHHKD-LVAHIVFV 627 (929)
Q Consensus 552 ~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~---~~~~~vLL~GppGtGKTtLaralA~~L~~~~~-~~~~~~~V 627 (929)
.+++++|++.+++++.+........ ......|. +...++||+||||||||++|+++|+.+..... ...+++++
T Consensus 4 ~l~~~~Gl~~vk~~i~~~~~~~~~~---~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~ 80 (261)
T TIGR02881 4 ELSRMVGLDEVKALIKEIYAWIQIN---EKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEV 80 (261)
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHH---HHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEe
Confidence 4678899999998888765432111 11222333 23457999999999999999999998743321 12467889
Q ss_pred eccccccCchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCC
Q 002386 628 CCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGI 707 (929)
Q Consensus 628 ~~s~L~~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~ 707 (929)
+|+++.+.+.++....+.++|..+. ++||||||+|.|.. ..+. .......+.|...|+....
T Consensus 81 ~~~~l~~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~~---~~~~----~~~~~~i~~Ll~~~e~~~~-------- 142 (261)
T TIGR02881 81 ERADLVGEYIGHTAQKTREVIKKAL---GGVLFIDEAYSLAR---GGEK----DFGKEAIDTLVKGMEDNRN-------- 142 (261)
T ss_pred cHHHhhhhhccchHHHHHHHHHhcc---CCEEEEechhhhcc---CCcc----chHHHHHHHHHHHHhccCC--------
Confidence 9999999888888888888888764 46999999999862 1111 1112445566666665422
Q ss_pred CcEEEEEecCCCC-----ccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhhcccccCHHHHHHHHhhc---------
Q 002386 708 GPIAFVASAQSLE-----KIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKC--------- 773 (929)
Q Consensus 708 ~~VivIattn~~~-----~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~d~~l~~LA~~t--------- 773 (929)
.+++|+++...+ .++|+|.+ ||...++|++++.+++.+|++.++...+..++++.+..++...
T Consensus 143 -~~~vila~~~~~~~~~~~~~p~L~s--Rf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~~ 219 (261)
T TIGR02881 143 -EFVLILAGYSDEMDYFLSLNPGLRS--RFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKLREHLYKVDQLSSR 219 (261)
T ss_pred -CEEEEecCCcchhHHHHhcChHHHh--ccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhccCC
Confidence 356666554322 36789998 9998999999999999999999999888888888877664321
Q ss_pred CCCChhhHHHHHHHHHHHHhhccc
Q 002386 774 DGYDAYDLEILVDRTVHAAVGRYL 797 (929)
Q Consensus 774 eG~s~~DL~~Lv~~A~~~a~~r~~ 797 (929)
...+++.+.++++.|......|..
T Consensus 220 ~~gn~R~~~n~~e~a~~~~~~r~~ 243 (261)
T TIGR02881 220 EFSNARYVRNIIEKAIRRQAVRLL 243 (261)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHh
Confidence 224578889999998887777754
No 49
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.80 E-value=9.5e-19 Score=218.03 Aligned_cols=190 Identities=16% Similarity=0.260 Sum_probs=133.7
Q ss_pred ccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCc----cceeeEEEEe
Q 002386 553 VSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHK----DLVAHIVFVC 628 (929)
Q Consensus 553 ~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~----~~~~~~~~V~ 628 (929)
++.+.|.+..+..+++.+ . .....+++|+||||||||++++++|+.+.... .....++.++
T Consensus 172 ~~~~igr~~ei~~~~~~l----~-----------r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~ 236 (852)
T TIGR03346 172 LDPVIGRDEEIRRTIQVL----S-----------RRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALD 236 (852)
T ss_pred CCcCCCcHHHHHHHHHHH----h-----------cCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEee
Confidence 455777887766666532 1 12235789999999999999999999874321 0125677777
Q ss_pred ccccc--cCchhhHHHHHHHHHHHHHhc-CCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCcc
Q 002386 629 CSRLS--LEKGPIIRQALSNFISEALDH-APSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSC 705 (929)
Q Consensus 629 ~s~L~--~~~~~~~~~~l~~~f~~a~~~-~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~ 705 (929)
...+. ..+.++.++.+..+|..+... .+.||||||+|.|++.... .+ . ....+.|...+..
T Consensus 237 ~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~-~~--~----~d~~~~Lk~~l~~--------- 300 (852)
T TIGR03346 237 MGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKA-EG--A----MDAGNMLKPALAR--------- 300 (852)
T ss_pred HHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCC-cc--h----hHHHHHhchhhhc---------
Confidence 77664 356678888899999988653 5899999999999852211 11 1 1233444433321
Q ss_pred CCCcEEEEEecCCCC-----ccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhh----cccccCHHHHHHHHhhcCCC
Q 002386 706 GIGPIAFVASAQSLE-----KIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQR----RSLECSDEILLDVASKCDGY 776 (929)
Q Consensus 706 ~~~~VivIattn~~~-----~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~----~~~~~~d~~l~~LA~~teG~ 776 (929)
+.+.+|++|+..+ .+|+++.| ||. .|.++.|+.+++.+||+.+..+ .++.+.+..+..++..+.+|
T Consensus 301 --g~i~~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~y 375 (852)
T TIGR03346 301 --GELHCIGATTLDEYRKYIEKDAALER--RFQ-PVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRY 375 (852)
T ss_pred --CceEEEEeCcHHHHHHHhhcCHHHHh--cCC-EEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhcccc
Confidence 2589999988754 47999999 997 6899999999999999976554 34556788888888777766
Q ss_pred Ch
Q 002386 777 DA 778 (929)
Q Consensus 777 s~ 778 (929)
..
T Consensus 376 i~ 377 (852)
T TIGR03346 376 IT 377 (852)
T ss_pred cc
Confidence 54
No 50
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.80 E-value=9.7e-19 Score=217.05 Aligned_cols=190 Identities=16% Similarity=0.259 Sum_probs=131.5
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCcc----ceeeEEEE
Q 002386 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKD----LVAHIVFV 627 (929)
Q Consensus 552 ~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~----~~~~~~~V 627 (929)
+++.+.|.+..+..+++-| . .....+++|+||||||||++++++|..+..... ....++.+
T Consensus 176 ~l~~vigr~~ei~~~i~iL----~-----------r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l 240 (857)
T PRK10865 176 KLDPVIGRDEEIRRTIQVL----Q-----------RRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLAL 240 (857)
T ss_pred CCCcCCCCHHHHHHHHHHH----h-----------cCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEE
Confidence 3456778887666665532 2 112356999999999999999999999853210 12567788
Q ss_pred eccccc--cCchhhHHHHHHHHHHHHHh-cCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCc
Q 002386 628 CCSRLS--LEKGPIIRQALSNFISEALD-HAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSS 704 (929)
Q Consensus 628 ~~s~L~--~~~~~~~~~~l~~~f~~a~~-~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~ 704 (929)
+...+. ..+.++.+..++.+|.+... ..+.||||||+|.|.+.... +++ . ...+.|...+..
T Consensus 241 ~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~-~~~--~----d~~~~lkp~l~~-------- 305 (857)
T PRK10865 241 DMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKA-DGA--M----DAGNMLKPALAR-------- 305 (857)
T ss_pred ehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCC-ccc--h----hHHHHhcchhhc--------
Confidence 887765 44668888889999988643 56889999999999853321 111 1 223344443321
Q ss_pred cCCCcEEEEEecCCCC-----ccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhh----cccccCHHHHHHHHhhcCC
Q 002386 705 CGIGPIAFVASAQSLE-----KIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQR----RSLECSDEILLDVASKCDG 775 (929)
Q Consensus 705 ~~~~~VivIattn~~~-----~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~----~~~~~~d~~l~~LA~~teG 775 (929)
+.+.+|++|+..+ .+|+++.| ||+ .|.++.|+.+++.+||+.+..+ .++.++++.+...+..+.+
T Consensus 306 ---g~l~~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~eP~~~~~~~iL~~l~~~~e~~~~v~~~d~a~~~a~~ls~r 379 (857)
T PRK10865 306 ---GELHCVGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHR 379 (857)
T ss_pred ---CCCeEEEcCCCHHHHHHhhhcHHHHh--hCC-EEEeCCCCHHHHHHHHHHHhhhhccCCCCCcCHHHHHHHHHHhhc
Confidence 2589999998866 47999999 998 6889999999999999876654 2345667766665555544
Q ss_pred CC
Q 002386 776 YD 777 (929)
Q Consensus 776 ~s 777 (929)
|.
T Consensus 380 y~ 381 (857)
T PRK10865 380 YI 381 (857)
T ss_pred cc
Confidence 43
No 51
>CHL00181 cbbX CbbX; Provisional
Probab=99.77 E-value=3.5e-18 Score=187.08 Aligned_cols=220 Identities=16% Similarity=0.179 Sum_probs=156.8
Q ss_pred ccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCC---ceEEEECCCCcHHHHHHHHHHHHhccCccc-eeeEEEEecc
Q 002386 555 SLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLP---GHILIHGPPGSGKTSLAKAVAKSLEHHKDL-VAHIVFVCCS 630 (929)
Q Consensus 555 ~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~---~~vLL~GppGtGKTtLaralA~~L~~~~~~-~~~~~~V~~s 630 (929)
+++|++.+++++.+-+..+. ....+...|..++ .++||+||||||||++|+++|+.+...... ..+++++++.
T Consensus 24 ~l~Gl~~vK~~i~e~~~~~~---~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~ 100 (287)
T CHL00181 24 ELVGLAPVKTRIREIAALLL---IDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRD 100 (287)
T ss_pred hcCCcHHHHHHHHHHHHHHH---HHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHH
Confidence 68899999988877553322 2234444555443 369999999999999999999987533221 2458889988
Q ss_pred ccccCchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCCCcE
Q 002386 631 RLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPI 710 (929)
Q Consensus 631 ~L~~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V 710 (929)
++.+.+.+........+|..+. +.||||||+|.+... +... .........|...|+... ..+
T Consensus 101 ~l~~~~~g~~~~~~~~~l~~a~---ggVLfIDE~~~l~~~--~~~~----~~~~e~~~~L~~~me~~~---------~~~ 162 (287)
T CHL00181 101 DLVGQYIGHTAPKTKEVLKKAM---GGVLFIDEAYYLYKP--DNER----DYGSEAIEILLQVMENQR---------DDL 162 (287)
T ss_pred HHHHHHhccchHHHHHHHHHcc---CCEEEEEccchhccC--CCcc----chHHHHHHHHHHHHhcCC---------CCE
Confidence 8887777766666677777763 469999999998642 1111 122456677777776532 146
Q ss_pred EEEEecCCCC-----ccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhhcccccCHHHHHHHHhh----c--CCCC-h
Q 002386 711 AFVASAQSLE-----KIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASK----C--DGYD-A 778 (929)
Q Consensus 711 ivIattn~~~-----~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~d~~l~~LA~~----t--eG~s-~ 778 (929)
++|++++... .++|.|.+ ||+.+++|++|+.+++.+|++.++++.+..++++....+... . ..|. +
T Consensus 163 ~vI~ag~~~~~~~~~~~np~L~s--R~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~~~~~~~~GNa 240 (287)
T CHL00181 163 VVIFAGYKDRMDKFYESNPGLSS--RIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEAEKALLDYIKKRMEQPLFANA 240 (287)
T ss_pred EEEEeCCcHHHHHHHhcCHHHHH--hCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCccH
Confidence 7777765422 24688998 999999999999999999999999988777777754443332 2 3344 7
Q ss_pred hhHHHHHHHHHHHHhhccc
Q 002386 779 YDLEILVDRTVHAAVGRYL 797 (929)
Q Consensus 779 ~DL~~Lv~~A~~~a~~r~~ 797 (929)
++++++++++..+...|..
T Consensus 241 R~vrn~ve~~~~~~~~r~~ 259 (287)
T CHL00181 241 RSVRNALDRARMRQANRIF 259 (287)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999988887765
No 52
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=7.8e-18 Score=200.09 Aligned_cols=325 Identities=18% Similarity=0.222 Sum_probs=207.1
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCcc----ceeeEEEE
Q 002386 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKD----LVAHIVFV 627 (929)
Q Consensus 552 ~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~----~~~~~~~V 627 (929)
+++-++|.+..++.+++-|. + +...+-+|.|+||+|||.++..+|.+.....- ....++.+
T Consensus 168 klDPvIGRd~EI~r~iqIL~---R------------R~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sL 232 (786)
T COG0542 168 KLDPVIGRDEEIRRTIQILS---R------------RTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSL 232 (786)
T ss_pred CCCCCcChHHHHHHHHHHHh---c------------cCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEe
Confidence 45667888888888777432 1 22245788999999999999999999865421 23556777
Q ss_pred eccccc--cCchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCcc
Q 002386 628 CCSRLS--LEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSC 705 (929)
Q Consensus 628 ~~s~L~--~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~ 705 (929)
+...+. .++.|+.+.+++.++++.....+.||||||+|.+.+..+... + .- ...+.|...+..
T Consensus 233 D~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G-~-a~----DAaNiLKPaLAR--------- 297 (786)
T COG0542 233 DLGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEG-G-AM----DAANLLKPALAR--------- 297 (786)
T ss_pred cHHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccc-c-cc----chhhhhHHHHhc---------
Confidence 777776 567799999999999999988899999999999986332211 1 11 233444444432
Q ss_pred CCCcEEEEEecCCCC-----ccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhh----cccccCHHHHHHHHhhcCCC
Q 002386 706 GIGPIAFVASAQSLE-----KIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQR----RSLECSDEILLDVASKCDGY 776 (929)
Q Consensus 706 ~~~~VivIattn~~~-----~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~----~~~~~~d~~l~~LA~~teG~ 776 (929)
+.+.+|++|...+ .-|++|.| ||. .|.+..|+.++-..||+-.-.+ +++.++|+.+...+.....|
T Consensus 298 --GeL~~IGATT~~EYRk~iEKD~AL~R--RFQ-~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~LS~RY 372 (786)
T COG0542 298 --GELRCIGATTLDEYRKYIEKDAALER--RFQ-KVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTLSDRY 372 (786)
T ss_pred --CCeEEEEeccHHHHHHHhhhchHHHh--cCc-eeeCCCCCHHHHHHHHHHHHHHHHHccCceecHHHHHHHHHHHHhh
Confidence 2478888886533 24899999 999 7899999999999999865443 45668888887777666554
Q ss_pred Ch-----hhHHHHHHHHHHHHhhccc-cC----------------------C----cc-cc--------------c-ccc
Q 002386 777 DA-----YDLEILVDRTVHAAVGRYL-HS----------------------D----SS-FE--------------K-HIK 808 (929)
Q Consensus 777 s~-----~DL~~Lv~~A~~~a~~r~~-~~----------------------~----~~-~~--------------~-~~~ 808 (929)
-. .---.+++.|+........ +. . .. .. . ...
T Consensus 373 I~dR~LPDKAIDLiDeA~a~~~l~~~~p~~l~~~~~~~~~l~~e~~~~~~e~~~~~k~~~~~~~~~~~~~~~~~~~~~~~ 452 (786)
T COG0542 373 IPDRFLPDKAIDLLDEAGARVRLEIDKPEELDELERELAQLEIEKEALEREQDEKEKKLIDEIIKLKEGRIPELEKELEA 452 (786)
T ss_pred cccCCCCchHHHHHHHHHHHHHhcccCCcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhHHHHHhh
Confidence 43 2122344444322211100 00 0 00 00 0 000
Q ss_pred cccccccccccccccccccccccc---cccc-CCCCCccCCCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEe
Q 002386 809 PTLVRDDFSQAMHEFLPVAMRDIT---KTSA-EGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLY 884 (929)
Q Consensus 809 ~~lt~edf~~al~~~~P~slr~v~---l~~~-~~~~~~w~dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLy 884 (929)
.++.+++...+..++-....... ..+- .....--..+.|++++...+...+.. .+.--+-|-||-..+||.
T Consensus 453 -~v~~~~Ia~vv~~~TgIPv~~l~~~e~~kll~le~~L~~rViGQd~AV~avs~aIrr----aRaGL~dp~rPigsFlF~ 527 (786)
T COG0542 453 -EVDEDDIAEVVARWTGIPVAKLLEDEKEKLLNLERRLKKRVIGQDEAVEAVSDAIRR----ARAGLGDPNRPIGSFLFL 527 (786)
T ss_pred -ccCHHHHHHHHHHHHCCChhhhchhhHHHHHHHHHHHhcceeChHHHHHHHHHHHHH----HhcCCCCCCCCceEEEee
Confidence 13445555555554422211110 0000 00011123478888888888777642 222222344566678899
Q ss_pred cCCCCcHHHHHHHHHHHcC---CceEEEecccccc
Q 002386 885 GPPGCGKTHIVGAAAAACS---LRFISVKGPELLN 916 (929)
Q Consensus 885 GpPGtGKT~LA~alA~e~g---lnfIsVkg~ELl~ 916 (929)
||+|+|||.||+++|..+. -++|.++++|...
T Consensus 528 GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~E 562 (786)
T COG0542 528 GPTGVGKTELAKALAEALFGDEQALIRIDMSEYME 562 (786)
T ss_pred CCCcccHHHHHHHHHHHhcCCCccceeechHHHHH
Confidence 9999999999999999997 8899999999876
No 53
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.76 E-value=1.1e-17 Score=183.36 Aligned_cols=220 Identities=17% Similarity=0.176 Sum_probs=159.9
Q ss_pred ccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCC---CceEEEECCCCcHHHHHHHHHHHHhccCccc-eeeEEEEecc
Q 002386 555 SLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPL---PGHILIHGPPGSGKTSLAKAVAKSLEHHKDL-VAHIVFVCCS 630 (929)
Q Consensus 555 ~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~---~~~vLL~GppGtGKTtLaralA~~L~~~~~~-~~~~~~V~~s 630 (929)
+++|++.+++++.+-...+. .++.+...|+.. +.++||+||||||||++|+++|+.+...+.. ..+++++++.
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~---~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~ 99 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLL---VERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRD 99 (284)
T ss_pred hccCHHHHHHHHHHHHHHHH---HHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHH
Confidence 57889999888877544322 233455556553 3489999999999999999999988643321 2368899998
Q ss_pred ccccCchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCCCcE
Q 002386 631 RLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPI 710 (929)
Q Consensus 631 ~L~~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V 710 (929)
++.+...+.....+..+|..+. +++|||||++.+.+.+. + ........+.|...|+... .++
T Consensus 100 ~l~~~~~g~~~~~~~~~~~~a~---~gvL~iDEi~~L~~~~~--~----~~~~~~~~~~Ll~~le~~~---------~~~ 161 (284)
T TIGR02880 100 DLVGQYIGHTAPKTKEILKRAM---GGVLFIDEAYYLYRPDN--E----RDYGQEAIEILLQVMENQR---------DDL 161 (284)
T ss_pred HHhHhhcccchHHHHHHHHHcc---CcEEEEechhhhccCCC--c----cchHHHHHHHHHHHHhcCC---------CCE
Confidence 8877666666666777787763 46999999999863111 1 1122355667777776432 147
Q ss_pred EEEEecCCC--C---ccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhhcccccCHHHHHHHHhh-------cCCCCh
Q 002386 711 AFVASAQSL--E---KIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASK-------CDGYDA 778 (929)
Q Consensus 711 ivIattn~~--~---~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~d~~l~~LA~~-------teG~s~ 778 (929)
++|++++.. + .++|+|.+ ||...|+||+++.+++.+|++.++++.+..++++.+..++.. ..-.++
T Consensus 162 ~vI~a~~~~~~~~~~~~np~L~s--R~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~GN~ 239 (284)
T TIGR02880 162 VVILAGYKDRMDSFFESNPGFSS--RVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPHFANA 239 (284)
T ss_pred EEEEeCCcHHHHHHHhhCHHHHh--hCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCCCChH
Confidence 777776542 2 24789999 999999999999999999999999987777888877766654 222357
Q ss_pred hhHHHHHHHHHHHHhhccc
Q 002386 779 YDLEILVDRTVHAAVGRYL 797 (929)
Q Consensus 779 ~DL~~Lv~~A~~~a~~r~~ 797 (929)
++++++++++..+...|..
T Consensus 240 R~lrn~ve~~~~~~~~r~~ 258 (284)
T TIGR02880 240 RSIRNAIDRARLRQANRLF 258 (284)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 9999999999988887764
No 54
>PF09263 PEX-2N: Peroxisome biogenesis factor 1, N-terminal ; InterPro: IPR015343 This domain adopts a Cdc48 domain 2-like fold, with a beta-alpha-beta(3) arrangement. It has been suggested that this domain may be involved in interactions with ubiquitin, ubiquitin-like protein modifiers, or ubiquitin-like domains, such as Ubx. Furthermore, the domain may possess a putative adaptor or substrate binding site, allowing for peroxisomal biogenesis, membrane fusion and protein translocation []. ; PDB: 1WLF_A.
Probab=99.75 E-value=1.7e-18 Score=145.84 Aligned_cols=80 Identities=26% Similarity=0.417 Sum_probs=55.2
Q ss_pred EEEEEeCCccccceeCCHHHHHHHhhccccCCCCceEEEEEEeCCCCeEEEEecCCcCC----CCeeeecHhHHhhcCCC
Q 002386 3 LEVRVVGGVENCFVSLPLKLIETLESTRSAHLLPQVLSLELRSRSNQRWVVAWSGATSS----SSFIEVARQFAECISLA 78 (929)
Q Consensus 3 ~~v~~~~~~~~~~v~lp~~l~~~l~~~~~~~~~~q~~~~e~~~~~~~~~~~gw~g~~s~----~~~iei~~~~a~~~gl~ 78 (929)
+.|.|++ .||||++||++|++.|. +.|+++||++|+++.++|++|++.-+. .+.+|||++||++|||+
T Consensus 4 vtv~f~n-~kdCFL~Lp~~l~~~L~-------L~q~qAvEvsWg~~~pvfLSW~e~r~~~~~~en~~EinrqlgeKLGl~ 75 (87)
T PF09263_consen 4 VTVVFNN-AKDCFLHLPSRLASQLH-------LQQNQAVEVSWGHQSPVFLSWVEGRSFSDQGENVAEINRQLGEKLGLS 75 (87)
T ss_dssp EEEEEE---SSS-EEE-HHHHHHTT---------TT--EEEESSS---EEE-EEE-SS-------EEEEEHHHHHHTT--
T ss_pred EEEEecC-CcceEEECCHHHHHHHH-------HhhCceEEEEeCCCCcEEEEeecccccCCccccHHHHHHHHHHhhCCC
Confidence 5678887 99999999999999998 468999999999977999999998543 48999999999999999
Q ss_pred CCCEEEEEEeec
Q 002386 79 DHTIVQVRVVSN 90 (929)
Q Consensus 79 ~~~~v~~~~~~~ 90 (929)
||++|++++|.+
T Consensus 76 dGeQvfLrpCs~ 87 (87)
T PF09263_consen 76 DGEQVFLRPCSH 87 (87)
T ss_dssp TT-EEEEEE-S-
T ss_pred cCCeEeeeeCCC
Confidence 999999999863
No 55
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=1.1e-18 Score=188.29 Aligned_cols=92 Identities=36% Similarity=0.693 Sum_probs=86.4
Q ss_pred cCCCCCccCCCCCchhhHHHHHHHHhcCCCchhhhhhCC-CCCCceeEEecCCCCcHHHHHHHHHHHcCCceEEEecccc
Q 002386 836 AEGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAP-LRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPEL 914 (929)
Q Consensus 836 ~~~~~~~w~dIgGL~~vk~~L~e~le~p~k~~~if~~~~-lr~~sGiLLyGpPGtGKT~LA~alA~e~glnfIsVkg~EL 914 (929)
|...++.|+|||||+.+++.|.|.+.+|+++|+.|+..+ ++++.|||||||||||||++|+|+|++.|.+||.|.++.|
T Consensus 84 p~~I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~l 163 (386)
T KOG0737|consen 84 PSEIGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNL 163 (386)
T ss_pred hhhceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeecccc
Confidence 334568999999999999999999999999999998655 6899999999999999999999999999999999999999
Q ss_pred cccccChhhHHHh
Q 002386 915 LNKYIGASEQAVR 927 (929)
Q Consensus 915 l~kyIG~SEq~VR 927 (929)
.+||.|++|+.|+
T Consensus 164 t~KWfgE~eKlv~ 176 (386)
T KOG0737|consen 164 TSKWFGEAQKLVK 176 (386)
T ss_pred chhhHHHHHHHHH
Confidence 9999999999886
No 56
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=1.8e-18 Score=176.16 Aligned_cols=90 Identities=37% Similarity=0.662 Sum_probs=88.0
Q ss_pred CCCccCCCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHcCCceEEEecccccccc
Q 002386 839 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKY 918 (929)
Q Consensus 839 ~~~~w~dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~glnfIsVkg~ELl~ky 918 (929)
+.+.+.|+|||+-.|+.++|.+++|+.+.++|.+.|+.+|.|+|||||||||||+||+|+|......||.|.|+|++.||
T Consensus 150 pdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvqky 229 (408)
T KOG0727|consen 150 PDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKY 229 (408)
T ss_pred CCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHH
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cChhhHHHhh
Q 002386 919 IGASEQAVRR 928 (929)
Q Consensus 919 IG~SEq~VRd 928 (929)
.|+.-+.|||
T Consensus 230 lgegprmvrd 239 (408)
T KOG0727|consen 230 LGEGPRMVRD 239 (408)
T ss_pred hccCcHHHHH
Confidence 9999999997
No 57
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.73 E-value=2.3e-17 Score=159.10 Aligned_cols=130 Identities=30% Similarity=0.486 Sum_probs=112.4
Q ss_pred EEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccccccCchhhHHHHHHHHHHHHHhcC-CcEEEEccccccccCC
Q 002386 593 ILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHA-PSIVIFDNLDSIISSS 671 (929)
Q Consensus 593 vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~~~~~~~~~~~l~~~f~~a~~~~-PsVL~LDEiD~L~~~~ 671 (929)
|||+||||||||++++.+|+.++ .+++.+++..+.+...+...+.+..+|..+.... |+||||||+|.+++..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~------~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~ 74 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG------FPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKS 74 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT------SEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHC
T ss_pred CEEECcCCCCeeHHHHHHHhhcc------cccccccccccccccccccccccccccccccccccceeeeeccchhccccc
Confidence 69999999999999999999998 8899999999998888999999999999998887 9999999999998633
Q ss_pred CCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCCCcEEEEEecCCCCccccccccCCCcceEeeCC
Q 002386 672 SDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLP 739 (929)
Q Consensus 672 ~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~VivIattn~~~~L~~~L~~~~Rf~~~i~l~ 739 (929)
..........+.+.|...++...... .++++|+|+|..+.+++.+.+ +||+..++++
T Consensus 75 ----~~~~~~~~~~~~~~L~~~l~~~~~~~------~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~ 131 (132)
T PF00004_consen 75 ----QPSSSSFEQRLLNQLLSLLDNPSSKN------SRVIVIATTNSPDKIDPALLR-SRFDRRIEFP 131 (132)
T ss_dssp ----STSSSHHHHHHHHHHHHHHHTTTTTS------SSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-
T ss_pred ----ccccccccccccceeeeccccccccc------ccceeEEeeCChhhCCHhHHh-CCCcEEEEcC
Confidence 22344556688888999988876542 259999999999999999997 7999999886
No 58
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=3.9e-18 Score=177.60 Aligned_cols=92 Identities=37% Similarity=0.715 Sum_probs=85.3
Q ss_pred ccccCCCCCccCCCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHcCCceEEEecc
Q 002386 833 KTSAEGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGP 912 (929)
Q Consensus 833 l~~~~~~~~~w~dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~glnfIsVkg~ 912 (929)
..+| ++.|+|+.||+.+|+.|+|++.+|.++|.+|.. ..++-+||||||||||||+-||+|+|.|.+-.|+||..+
T Consensus 125 ~EKP---NVkWsDVAGLE~AKeALKEAVILPIKFPqlFtG-kR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSS 200 (439)
T KOG0739|consen 125 REKP---NVKWSDVAGLEGAKEALKEAVILPIKFPQLFTG-KRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSS 200 (439)
T ss_pred ccCC---CCchhhhccchhHHHHHHhheeecccchhhhcC-CCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehH
Confidence 3455 599999999999999999999999999999986 456678999999999999999999999999999999999
Q ss_pred cccccccChhhHHHhh
Q 002386 913 ELLNKYIGASEQAVRR 928 (929)
Q Consensus 913 ELl~kyIG~SEq~VRd 928 (929)
+|++||+|+||+-|+.
T Consensus 201 DLvSKWmGESEkLVkn 216 (439)
T KOG0739|consen 201 DLVSKWMGESEKLVKN 216 (439)
T ss_pred HHHHHHhccHHHHHHH
Confidence 9999999999998863
No 59
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=1.9e-16 Score=175.65 Aligned_cols=220 Identities=16% Similarity=0.232 Sum_probs=152.4
Q ss_pred ecccCccCCc--cccccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccC
Q 002386 540 VKERGSTQGF--DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHH 617 (929)
Q Consensus 540 ~~~~~~~~~~--~~~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~ 617 (929)
...+|...+| ..+|..+.-....+++|++.+..+.. ..+++.+.|.+..+|.|||||||||||+++.|+|.+|+
T Consensus 185 ~~~~W~~v~f~HpstF~TlaMd~~~K~~I~~Dl~~F~k--~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~-- 260 (457)
T KOG0743|consen 185 KGGEWRSVGFPHPSTFETLAMDPDLKERIIDDLDDFIK--GKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLN-- 260 (457)
T ss_pred cCCcceecCCCCCCCccccccChhHHHHHHHHHHHHHh--cchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcC--
Confidence 3445554444 34566666445678888888876665 45799999999999999999999999999999999998
Q ss_pred ccceeeEEEEeccccccCchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCC---CCCchhHHHHHHHHHHHH
Q 002386 618 KDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEG---SQPSTSVIALTKFLVDIM 694 (929)
Q Consensus 618 ~~~~~~~~~V~~s~L~~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~---~~~~~~~~~l~~~L~~~l 694 (929)
..+..+..++..... + ++.++..+ ...+||+|+|||.-+..+..... ........-.+.-|++.+
T Consensus 261 ----ydIydLeLt~v~~n~--d----Lr~LL~~t--~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfi 328 (457)
T KOG0743|consen 261 ----YDIYDLELTEVKLDS--D----LRHLLLAT--PNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFL 328 (457)
T ss_pred ----CceEEeeeccccCcH--H----HHHHHHhC--CCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhh
Confidence 556655555443322 1 44454444 45589999999987642222111 000011224456678888
Q ss_pred HHhcccccCccCCCcEEEEEecCCCCccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhhcccccCHHHHHHHHhhcC
Q 002386 695 DEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCD 774 (929)
Q Consensus 695 d~~~~~~~~~~~~~~VivIattn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~d~~l~~LA~~te 774 (929)
|++-+. |+. --++|+|||..+.|||+|.||||+|.+|++...+.++-..++..++.-.. +...+.++.+.-+
T Consensus 329 DGlwSs----cg~-ERIivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~---~h~L~~eie~l~~ 400 (457)
T KOG0743|consen 329 DGLWSS----CGD-ERIIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEE---DHRLFDEIERLIE 400 (457)
T ss_pred cccccc----CCC-ceEEEEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCC---CcchhHHHHHHhh
Confidence 887543 332 35788999999999999999999999999999999999999999886432 2223444444433
Q ss_pred C--CChhhHHH
Q 002386 775 G--YDAYDLEI 783 (929)
Q Consensus 775 G--~s~~DL~~ 783 (929)
+ .+|+|+..
T Consensus 401 ~~~~tPA~V~e 411 (457)
T KOG0743|consen 401 ETEVTPAQVAE 411 (457)
T ss_pred cCccCHHHHHH
Confidence 3 48888754
No 60
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.71 E-value=3e-16 Score=161.50 Aligned_cols=195 Identities=17% Similarity=0.269 Sum_probs=128.4
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccc
Q 002386 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSR 631 (929)
Q Consensus 552 ~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~ 631 (929)
++++..|++..++.+.-.+..... ......++|||||||+||||||+.+|++++ ..+...+...
T Consensus 22 ~L~efiGQ~~l~~~l~i~i~aa~~----------r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~------~~~~~~sg~~ 85 (233)
T PF05496_consen 22 SLDEFIGQEHLKGNLKILIRAAKK----------RGEALDHMLFYGPPGLGKTTLARIIANELG------VNFKITSGPA 85 (233)
T ss_dssp SCCCS-S-HHHHHHHHHHHHHHHC----------TTS---EEEEESSTTSSHHHHHHHHHHHCT--------EEEEECCC
T ss_pred CHHHccCcHHHHhhhHHHHHHHHh----------cCCCcceEEEECCCccchhHHHHHHHhccC------CCeEeccchh
Confidence 356778888877765443332211 012235799999999999999999999998 6677666644
Q ss_pred cccCchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcc-----cccC---
Q 002386 632 LSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGE-----KRKS--- 703 (929)
Q Consensus 632 L~~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~-----~~~~--- 703 (929)
+. ..+++...+. .. ....||||||+|.+- ....+.|+..|+.+.- ....
T Consensus 86 i~--k~~dl~~il~----~l--~~~~ILFIDEIHRln---------------k~~qe~LlpamEd~~idiiiG~g~~ar~ 142 (233)
T PF05496_consen 86 IE--KAGDLAAILT----NL--KEGDILFIDEIHRLN---------------KAQQEILLPAMEDGKIDIIIGKGPNARS 142 (233)
T ss_dssp ----SCHHHHHHHH----T----TT-EEEECTCCC-----------------HHHHHHHHHHHHCSEEEEEBSSSSS-BE
T ss_pred hh--hHHHHHHHHH----hc--CCCcEEEEechhhcc---------------HHHHHHHHHHhccCeEEEEeccccccce
Confidence 32 2333333332 22 356799999999985 3677888888886542 1110
Q ss_pred -ccCCCcEEEEEecCCCCccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhhcccccCHHHHHHHHhhcCCCChhhHH
Q 002386 704 -SCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLE 782 (929)
Q Consensus 704 -~~~~~~VivIattn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~d~~l~~LA~~teG~s~~DL~ 782 (929)
.....++.+|++|++...+.+.|++ ||....++..++.++..+|+++.....++.++++...++|.++.| +|+-..
T Consensus 143 ~~~~l~~FTligATTr~g~ls~pLrd--RFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrG-tPRiAn 219 (233)
T PF05496_consen 143 IRINLPPFTLIGATTRAGLLSSPLRD--RFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRG-TPRIAN 219 (233)
T ss_dssp EEEE----EEEEEESSGCCTSHCCCT--TSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTT-SHHHHH
T ss_pred eeccCCCceEeeeeccccccchhHHh--hcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCC-ChHHHH
Confidence 1122368899999999999999999 999888999999999999999988888899999999999999988 776555
Q ss_pred HHHHHH
Q 002386 783 ILVDRT 788 (929)
Q Consensus 783 ~Lv~~A 788 (929)
++++++
T Consensus 220 rll~rv 225 (233)
T PF05496_consen 220 RLLRRV 225 (233)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666554
No 61
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=4.1e-17 Score=172.09 Aligned_cols=242 Identities=19% Similarity=0.209 Sum_probs=167.6
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCchhhhhhcC-----CCCCceEEEECCCCcHHHHHHHHHHHHhccCc---cceee
Q 002386 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYH-----LPLPGHILIHGPPGSGKTSLAKAVAKSLEHHK---DLVAH 623 (929)
Q Consensus 552 ~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~-----~~~~~~vLL~GppGtGKTtLaralA~~L~~~~---~~~~~ 623 (929)
-+.+++.....++++.......+. |...+ +..++-+||+||||||||+|+|++|+.|.-+. .....
T Consensus 140 lWEsLiyds~lK~~ll~Ya~s~l~------fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~ 213 (423)
T KOG0744|consen 140 LWESLIYDSNLKERLLSYAASALL------FSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQ 213 (423)
T ss_pred hHHHHhhcccHHHHHHHHHHHHHH------HHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccce
Confidence 344555455567777776542221 22222 34457799999999999999999999997542 22367
Q ss_pred EEEEeccccccCchhhHHHHHHHHHHHHHhc---CCc--EEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhc
Q 002386 624 IVFVCCSRLSLEKGPIIRQALSNFISEALDH---APS--IVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG 698 (929)
Q Consensus 624 ~~~V~~s~L~~~~~~~~~~~l~~~f~~a~~~---~Ps--VL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~ 698 (929)
.+.++|..++++|+++..+.+..+|+..... ... .++|||++.|...|........++..-++.+.++..+|.+.
T Consensus 214 liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK 293 (423)
T KOG0744|consen 214 LIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLK 293 (423)
T ss_pred EEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhc
Confidence 8999999999999999999988888877542 222 46689999998654222222222334588899999999887
Q ss_pred ccccCccCCCcEEEEEecCCCCccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhhc---ccccC-------------
Q 002386 699 EKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRR---SLECS------------- 762 (929)
Q Consensus 699 ~~~~~~~~~~~VivIattn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~---~~~~~------------- 762 (929)
... +|++++|+|-.+++|.++.. |-|.++++.+|+.+.|.+|++.++.+. ++-..
T Consensus 294 ~~~-------NvliL~TSNl~~siD~AfVD--RADi~~yVG~Pt~~ai~~IlkscieEL~~~gIi~~~~~s~~~~~~i~~ 364 (423)
T KOG0744|consen 294 RYP-------NVLILATSNLTDSIDVAFVD--RADIVFYVGPPTAEAIYEILKSCIEELISSGIILFHQRSTGVKEFIKY 364 (423)
T ss_pred cCC-------CEEEEeccchHHHHHHHhhh--HhhheeecCCccHHHHHHHHHHHHHHHHhcCeeeeeccchhhhHHhHh
Confidence 543 69999999999999999999 999999999999999999999887642 21111
Q ss_pred -HHHHHHHHhh-cCCCChhhHHHHHHHHHHHHhhccccCCccccccccccccccccccccc
Q 002386 763 -DEILLDVASK-CDGYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMH 821 (929)
Q Consensus 763 -d~~l~~LA~~-teG~s~~DL~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~lt~edf~~al~ 821 (929)
+.....++.. +.|.+|+.|+.|--.|. ....+ ..+++.++|..++-
T Consensus 365 ~~~~~~~~~~~~~~gLSGRtlrkLP~Lah-a~y~~------------~~~v~~~~fl~al~ 412 (423)
T KOG0744|consen 365 QKALRNILIELSTVGLSGRTLRKLPLLAH-AEYFR------------TFTVDLSNFLLALL 412 (423)
T ss_pred hHhHHHHHHHHhhcCCccchHhhhhHHHH-HhccC------------CCccChHHHHHHHH
Confidence 1112223332 48999988887654432 22222 14567777766654
No 62
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=8.2e-18 Score=171.20 Aligned_cols=90 Identities=43% Similarity=0.718 Sum_probs=87.3
Q ss_pred CCCccCCCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHcCCceEEEecccccccc
Q 002386 839 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKY 918 (929)
Q Consensus 839 ~~~~w~dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~glnfIsVkg~ELl~ky 918 (929)
++..++-+|||+...+.++|.+++|.+||++|...|+..|.|+|||||||||||+||+|+|+-..+.||.|.|+||+.||
T Consensus 142 PDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgselvqk~ 221 (404)
T KOG0728|consen 142 PDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKY 221 (404)
T ss_pred CccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cChhhHHHhh
Q 002386 919 IGASEQAVRR 928 (929)
Q Consensus 919 IG~SEq~VRd 928 (929)
||+..+.||+
T Consensus 222 igegsrmvre 231 (404)
T KOG0728|consen 222 IGEGSRMVRE 231 (404)
T ss_pred hhhhHHHHHH
Confidence 9999999996
No 63
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=1e-17 Score=171.92 Aligned_cols=90 Identities=38% Similarity=0.634 Sum_probs=87.9
Q ss_pred CCCccCCCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHcCCceEEEecccccccc
Q 002386 839 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKY 918 (929)
Q Consensus 839 ~~~~w~dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~glnfIsVkg~ELl~ky 918 (929)
+.+.++|+||..+..+.|+|.+++|+.+|+.|.+.++.+|+|+|||||||||||++|+|+|...+.-||.|-|+||+.||
T Consensus 172 pdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigselvqky 251 (435)
T KOG0729|consen 172 PDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQKY 251 (435)
T ss_pred CCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHHHH
Confidence 35999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cChhhHHHhh
Q 002386 919 IGASEQAVRR 928 (929)
Q Consensus 919 IG~SEq~VRd 928 (929)
||+..+.||+
T Consensus 252 vgegarmvre 261 (435)
T KOG0729|consen 252 VGEGARMVRE 261 (435)
T ss_pred hhhhHHHHHH
Confidence 9999999996
No 64
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=1e-17 Score=180.47 Aligned_cols=87 Identities=38% Similarity=0.671 Sum_probs=83.6
Q ss_pred CCccCCCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHcCCceEEEeccccccccc
Q 002386 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYI 919 (929)
Q Consensus 840 ~~~w~dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~glnfIsVkg~ELl~kyI 919 (929)
.+.|+||.||+++|+.|+|.+.+|+.+|+.|.. ..+|=+|+|++||||||||+||+|||.|||-.|+-|..+.|.+||=
T Consensus 208 ~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~G-irrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstltSKwR 286 (491)
T KOG0738|consen 208 NIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKG-IRRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLTSKWR 286 (491)
T ss_pred CcChHhhcchHHHHHHHHHHHhhhhhhHHHHhh-cccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhhhhhc
Confidence 599999999999999999999999999999987 4677789999999999999999999999999999999999999999
Q ss_pred ChhhHHHh
Q 002386 920 GASEQAVR 927 (929)
Q Consensus 920 G~SEq~VR 927 (929)
|+||+-||
T Consensus 287 GeSEKlvR 294 (491)
T KOG0738|consen 287 GESEKLVR 294 (491)
T ss_pred cchHHHHH
Confidence 99999998
No 65
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=5e-16 Score=167.76 Aligned_cols=177 Identities=18% Similarity=0.301 Sum_probs=124.4
Q ss_pred ceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccccccCchhhHHHHHHHHHHHHHhc-CCcEEEEcccccccc
Q 002386 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDH-APSIVIFDNLDSIIS 669 (929)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~~~~~~~~~~~l~~~f~~a~~~-~PsVL~LDEiD~L~~ 669 (929)
++||+|||||||||++||.+|++-+ ..+-.+...+..-.. ...-..++++|+.+... .+-+|||||+|.++.
T Consensus 385 RNilfyGPPGTGKTm~ArelAr~SG------lDYA~mTGGDVAPlG-~qaVTkiH~lFDWakkS~rGLllFIDEADAFLc 457 (630)
T KOG0742|consen 385 RNILFYGPPGTGKTMFARELARHSG------LDYAIMTGGDVAPLG-AQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLC 457 (630)
T ss_pred hheeeeCCCCCCchHHHHHHHhhcC------CceehhcCCCccccc-hHHHHHHHHHHHHHhhcccceEEEehhhHHHHH
Confidence 6799999999999999999999877 333333444433221 22234588899988654 456899999999885
Q ss_pred CCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCCCcEEEEEecCCCCccccccccCCCcceEeeCCCCcHHHHHHH
Q 002386 670 SSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAI 749 (929)
Q Consensus 670 ~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~VivIattn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~I 749 (929)
.+... ..++..+.- |..++-.-.+... .++++.++|++.++|.++.. ||+.+++||.|..++|..+
T Consensus 458 eRnkt---ymSEaqRsa---LNAlLfRTGdqSr------divLvlAtNrpgdlDsAV~D--Ride~veFpLPGeEERfkl 523 (630)
T KOG0742|consen 458 ERNKT---YMSEAQRSA---LNALLFRTGDQSR------DIVLVLATNRPGDLDSAVND--RIDEVVEFPLPGEEERFKL 523 (630)
T ss_pred Hhchh---hhcHHHHHH---HHHHHHHhccccc------ceEEEeccCCccchhHHHHh--hhhheeecCCCChHHHHHH
Confidence 43322 233322222 2222322221111 48889999999999999999 9999999999999999999
Q ss_pred HHHHHhhcc----------------------cc----cCHHHHHHHHhhcCCCChhhHHHHHHHH
Q 002386 750 LEHEIQRRS----------------------LE----CSDEILLDVASKCDGYDAYDLEILVDRT 788 (929)
Q Consensus 750 L~~~l~~~~----------------------~~----~~d~~l~~LA~~teG~s~~DL~~Lv~~A 788 (929)
|..++.+.- +. ..+..+.+.|..|+||++++|..|+--.
T Consensus 524 l~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfSGREiakLva~v 588 (630)
T KOG0742|consen 524 LNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFSGREIAKLVASV 588 (630)
T ss_pred HHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccCCcHHHHHHHHHHH
Confidence 998887421 11 1233477899999999999998886543
No 66
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.63 E-value=8.2e-15 Score=164.49 Aligned_cols=201 Identities=18% Similarity=0.265 Sum_probs=141.3
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccc
Q 002386 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSR 631 (929)
Q Consensus 552 ~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~ 631 (929)
++.++.|.+..++.+...+..... ...++.++||+||||||||++|+++|++++ ..+..++...
T Consensus 23 ~~~~~vG~~~~~~~l~~~l~~~~~----------~~~~~~~~ll~GppG~GKT~la~~ia~~l~------~~~~~~~~~~ 86 (328)
T PRK00080 23 SLDEFIGQEKVKENLKIFIEAAKK----------RGEALDHVLLYGPPGLGKTTLANIIANEMG------VNIRITSGPA 86 (328)
T ss_pred CHHHhcCcHHHHHHHHHHHHHHHh----------cCCCCCcEEEECCCCccHHHHHHHHHHHhC------CCeEEEeccc
Confidence 466788898888887665532211 123356799999999999999999999987 3444444433
Q ss_pred cccCchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcc-----cc----c
Q 002386 632 LSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGE-----KR----K 702 (929)
Q Consensus 632 L~~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~-----~~----~ 702 (929)
+. ..+. +..++... ..+.+|||||+|.+.. ...+.|...|+.... .. .
T Consensus 87 ~~--~~~~----l~~~l~~l--~~~~vl~IDEi~~l~~---------------~~~e~l~~~~e~~~~~~~l~~~~~~~~ 143 (328)
T PRK00080 87 LE--KPGD----LAAILTNL--EEGDVLFIDEIHRLSP---------------VVEEILYPAMEDFRLDIMIGKGPAARS 143 (328)
T ss_pred cc--ChHH----HHHHHHhc--ccCCEEEEecHhhcch---------------HHHHHHHHHHHhcceeeeeccCccccc
Confidence 22 1122 22333322 4578999999998842 122334455554321 00 0
Q ss_pred CccCCCcEEEEEecCCCCccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhhcccccCHHHHHHHHhhcCCCChhhHH
Q 002386 703 SSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLE 782 (929)
Q Consensus 703 ~~~~~~~VivIattn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~d~~l~~LA~~teG~s~~DL~ 782 (929)
......++.+|++|++...+++.|++ ||...+.|++|+.+++.+|++..+...++.++++.+..++..+.|. ++.+.
T Consensus 144 ~~~~l~~~~li~at~~~~~l~~~L~s--Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~-pR~a~ 220 (328)
T PRK00080 144 IRLDLPPFTLIGATTRAGLLTSPLRD--RFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGT-PRIAN 220 (328)
T ss_pred eeecCCCceEEeecCCcccCCHHHHH--hcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCC-chHHH
Confidence 00112347889999999999999988 9988899999999999999999999888999999999999999984 57777
Q ss_pred HHHHHHHHHHhh
Q 002386 783 ILVDRTVHAAVG 794 (929)
Q Consensus 783 ~Lv~~A~~~a~~ 794 (929)
.+++++...+..
T Consensus 221 ~~l~~~~~~a~~ 232 (328)
T PRK00080 221 RLLRRVRDFAQV 232 (328)
T ss_pred HHHHHHHHHHHH
Confidence 778777665544
No 67
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.63 E-value=2.8e-16 Score=178.98 Aligned_cols=90 Identities=38% Similarity=0.677 Sum_probs=87.5
Q ss_pred CCCccCCCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHcCCceEEEecccccccc
Q 002386 839 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKY 918 (929)
Q Consensus 839 ~~~~w~dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~glnfIsVkg~ELl~ky 918 (929)
+.+.|+||||++.+++.|++.+++|+.+++.|.+.++.++.|+|||||||||||++|+++|++++.+|+.+.+++++++|
T Consensus 140 p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~k~ 219 (398)
T PTZ00454 140 PDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQKY 219 (398)
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHHHh
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cChhhHHHhh
Q 002386 919 IGASEQAVRR 928 (929)
Q Consensus 919 IG~SEq~VRd 928 (929)
+|++++.+|+
T Consensus 220 ~ge~~~~lr~ 229 (398)
T PTZ00454 220 LGEGPRMVRD 229 (398)
T ss_pred cchhHHHHHH
Confidence 9999999875
No 68
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=1.7e-16 Score=164.86 Aligned_cols=89 Identities=37% Similarity=0.676 Sum_probs=86.8
Q ss_pred CCccCCCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHcCCceEEEeccccccccc
Q 002386 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYI 919 (929)
Q Consensus 840 ~~~w~dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~glnfIsVkg~ELl~kyI 919 (929)
.-.+.|||||++..+.++|.+++|+.||+.|..+++++|.|++|||+||||||+||+|+|.+....|+.|-|+||+.||.
T Consensus 181 ~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQkyl 260 (440)
T KOG0726|consen 181 QETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKYL 260 (440)
T ss_pred hhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHHHHh
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHhh
Q 002386 920 GASEQAVRR 928 (929)
Q Consensus 920 G~SEq~VRd 928 (929)
|+.-+-||+
T Consensus 261 GdGpklvRq 269 (440)
T KOG0726|consen 261 GDGPKLVRE 269 (440)
T ss_pred ccchHHHHH
Confidence 999999986
No 69
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=3.5e-16 Score=160.23 Aligned_cols=89 Identities=35% Similarity=0.640 Sum_probs=86.9
Q ss_pred CCccCCCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHcCCceEEEeccccccccc
Q 002386 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYI 919 (929)
Q Consensus 840 ~~~w~dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~glnfIsVkg~ELl~kyI 919 (929)
.-.++|||||+...+.|-|.+.+|+.+++.|.++++++|+|+|+|||||||||++|+|.|.+.+..|+..-||.|+.+||
T Consensus 167 tE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQMfI 246 (424)
T KOG0652|consen 167 TEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFI 246 (424)
T ss_pred cccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHHhhhh
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHhh
Q 002386 920 GASEQAVRR 928 (929)
Q Consensus 920 G~SEq~VRd 928 (929)
|...+-|||
T Consensus 247 GdGAkLVRD 255 (424)
T KOG0652|consen 247 GDGAKLVRD 255 (424)
T ss_pred cchHHHHHH
Confidence 999999997
No 70
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.61 E-value=1.6e-14 Score=160.63 Aligned_cols=199 Identities=18% Similarity=0.257 Sum_probs=137.2
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccc
Q 002386 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSR 631 (929)
Q Consensus 552 ~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~ 631 (929)
++.++.|++..++.+...+...... ...+.+++|+||||||||++|+++|++++ ..+..+.+..
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~----------~~~~~~~ll~Gp~G~GKT~la~~ia~~~~------~~~~~~~~~~ 65 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMR----------QEALDHLLLYGPPGLGKTTLAHIIANEMG------VNLKITSGPA 65 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhc----------CCCCCeEEEECCCCCCHHHHHHHHHHHhC------CCEEEeccch
Confidence 4567888988888877655322111 12346799999999999999999999987 3333443332
Q ss_pred cccCchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccc---------cc
Q 002386 632 LSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEK---------RK 702 (929)
Q Consensus 632 L~~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~---------~~ 702 (929)
... .+... ..+.. ...+.+|||||+|.+.+ ...+.|...|+..... ..
T Consensus 66 ~~~--~~~l~----~~l~~--~~~~~vl~iDEi~~l~~---------------~~~e~l~~~~~~~~~~~v~~~~~~~~~ 122 (305)
T TIGR00635 66 LEK--PGDLA----AILTN--LEEGDVLFIDEIHRLSP---------------AVEELLYPAMEDFRLDIVIGKGPSARS 122 (305)
T ss_pred hcC--chhHH----HHHHh--cccCCEEEEehHhhhCH---------------HHHHHhhHHHhhhheeeeeccCccccc
Confidence 211 12222 22222 24578999999999852 1223355555433210 00
Q ss_pred CccCCCcEEEEEecCCCCccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhhcccccCHHHHHHHHhhcCCCChhhHH
Q 002386 703 SSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLE 782 (929)
Q Consensus 703 ~~~~~~~VivIattn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~d~~l~~LA~~teG~s~~DL~ 782 (929)
......++.+|++|+....+++++++ ||...+.|++|+.+++.++++..+...+..++++.+..++..+.|+. +.+.
T Consensus 123 ~~~~~~~~~li~~t~~~~~l~~~l~s--R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~p-R~~~ 199 (305)
T TIGR00635 123 VRLDLPPFTLVGATTRAGMLTSPLRD--RFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTP-RIAN 199 (305)
T ss_pred eeecCCCeEEEEecCCccccCHHHHh--hcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCc-chHH
Confidence 00112247889999988999999999 99888999999999999999999888888899999999999999854 6667
Q ss_pred HHHHHHHHHH
Q 002386 783 ILVDRTVHAA 792 (929)
Q Consensus 783 ~Lv~~A~~~a 792 (929)
.+++.+...+
T Consensus 200 ~ll~~~~~~a 209 (305)
T TIGR00635 200 RLLRRVRDFA 209 (305)
T ss_pred HHHHHHHHHH
Confidence 7777765444
No 71
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.61 E-value=1.3e-14 Score=151.77 Aligned_cols=201 Identities=19% Similarity=0.288 Sum_probs=147.9
Q ss_pred ccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEecccc
Q 002386 553 VSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRL 632 (929)
Q Consensus 553 ~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L 632 (929)
+.+..|+++.++++.=.+.... .......|+||+||||.||||||+.+|++++ ..+...+...+
T Consensus 25 l~efiGQ~~vk~~L~ifI~AAk----------~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emg------vn~k~tsGp~l 88 (332)
T COG2255 25 LDEFIGQEKVKEQLQIFIKAAK----------KRGEALDHVLLFGPPGLGKTTLAHIIANELG------VNLKITSGPAL 88 (332)
T ss_pred HHHhcChHHHHHHHHHHHHHHH----------hcCCCcCeEEeeCCCCCcHHHHHHHHHHHhc------CCeEecccccc
Confidence 4566677777666654443221 1233457899999999999999999999998 44444433332
Q ss_pred ccCchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcc-----cccC----
Q 002386 633 SLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGE-----KRKS---- 703 (929)
Q Consensus 633 ~~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~-----~~~~---- 703 (929)
...+++...+. .. ...+|||||||+.+.+ .+-+.|...|+.+.- +...
T Consensus 89 --eK~gDlaaiLt----~L--e~~DVLFIDEIHrl~~---------------~vEE~LYpaMEDf~lDI~IG~gp~Arsv 145 (332)
T COG2255 89 --EKPGDLAAILT----NL--EEGDVLFIDEIHRLSP---------------AVEEVLYPAMEDFRLDIIIGKGPAARSI 145 (332)
T ss_pred --cChhhHHHHHh----cC--CcCCeEEEehhhhcCh---------------hHHHHhhhhhhheeEEEEEccCCccceE
Confidence 22344333332 22 4567999999999963 566778888887652 1111
Q ss_pred ccCCCcEEEEEecCCCCccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhhcccccCHHHHHHHHhhcCCCChhhHHH
Q 002386 704 SCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEI 783 (929)
Q Consensus 704 ~~~~~~VivIattn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~d~~l~~LA~~teG~s~~DL~~ 783 (929)
.-...++.+|++|.+...|...|+. ||+...++..++.++..+|+.+.....++.++++....+|.+..| +|+=...
T Consensus 146 ~ldLppFTLIGATTr~G~lt~PLrd--RFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRG-TPRIAnR 222 (332)
T COG2255 146 RLDLPPFTLIGATTRAGMLTNPLRD--RFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRG-TPRIANR 222 (332)
T ss_pred eccCCCeeEeeeccccccccchhHH--hcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccC-CcHHHHH
Confidence 1233578999999999999999999 999999999999999999999988888899999999999999888 7776677
Q ss_pred HHHHHHHHHhhc
Q 002386 784 LVDRTVHAAVGR 795 (929)
Q Consensus 784 Lv~~A~~~a~~r 795 (929)
|++|....|.-+
T Consensus 223 LLrRVRDfa~V~ 234 (332)
T COG2255 223 LLRRVRDFAQVK 234 (332)
T ss_pred HHHHHHHHHHHh
Confidence 777776666544
No 72
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.60 E-value=8.6e-16 Score=178.28 Aligned_cols=90 Identities=43% Similarity=0.826 Sum_probs=85.3
Q ss_pred CCCccCCCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHcCCc----------eEE
Q 002386 839 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLR----------FIS 908 (929)
Q Consensus 839 ~~~~w~dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~gln----------fIs 908 (929)
+.+.|+|||||+..++.+++.+++|..++++|...+++++.|+|||||||||||++|+++|++++.+ |+.
T Consensus 177 p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~ 256 (512)
T TIGR03689 177 PDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLN 256 (512)
T ss_pred CCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEe
Confidence 3589999999999999999999999999999999999999999999999999999999999998654 889
Q ss_pred EecccccccccChhhHHHhh
Q 002386 909 VKGPELLNKYIGASEQAVRR 928 (929)
Q Consensus 909 Vkg~ELl~kyIG~SEq~VRd 928 (929)
+++++++++|+|++|+.+|.
T Consensus 257 v~~~eLl~kyvGete~~ir~ 276 (512)
T TIGR03689 257 IKGPELLNKYVGETERQIRL 276 (512)
T ss_pred ccchhhcccccchHHHHHHH
Confidence 99999999999999999874
No 73
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.58 E-value=1.4e-15 Score=173.85 Aligned_cols=90 Identities=39% Similarity=0.709 Sum_probs=87.2
Q ss_pred CCCccCCCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHcCCceEEEecccccccc
Q 002386 839 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKY 918 (929)
Q Consensus 839 ~~~~w~dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~glnfIsVkg~ELl~ky 918 (929)
+.+.|+||||+++.++.|++.+++|+.+++.|...++.+++|+|||||||||||++|+++|++++.+|+.+.+++++++|
T Consensus 126 p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~~~ 205 (389)
T PRK03992 126 PNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQKF 205 (389)
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhHhh
Confidence 35899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cChhhHHHhh
Q 002386 919 IGASEQAVRR 928 (929)
Q Consensus 919 IG~SEq~VRd 928 (929)
+|++++.+|+
T Consensus 206 ~g~~~~~i~~ 215 (389)
T PRK03992 206 IGEGARLVRE 215 (389)
T ss_pred ccchHHHHHH
Confidence 9999999885
No 74
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.58 E-value=4.5e-14 Score=166.96 Aligned_cols=195 Identities=17% Similarity=0.201 Sum_probs=142.5
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCcc------------
Q 002386 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKD------------ 619 (929)
Q Consensus 552 ~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~------------ 619 (929)
+|++++|++..++.+.+.+.. ...+..+||+||+|+||||+++.+|+.+.....
T Consensus 14 tFdEVIGQe~Vv~~L~~aL~~--------------gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sC 79 (830)
T PRK07003 14 DFASLVGQEHVVRALTHALDG--------------GRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRAC 79 (830)
T ss_pred cHHHHcCcHHHHHHHHHHHhc--------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHH
Confidence 467889999888887774421 122345899999999999999999999874311
Q ss_pred ------ceeeEEEEeccccccCchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHH
Q 002386 620 ------LVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDI 693 (929)
Q Consensus 620 ------~~~~~~~V~~s~L~~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ 693 (929)
....+++++... ....++++..++............|+||||+|.|.. .-.+.|+..
T Consensus 80 r~I~~G~h~DviEIDAas--~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~---------------~A~NALLKt 142 (830)
T PRK07003 80 REIDEGRFVDYVEMDAAS--NRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTN---------------HAFNAMLKT 142 (830)
T ss_pred HHHhcCCCceEEEecccc--cccHHHHHHHHHHHHhccccCCceEEEEeChhhCCH---------------HHHHHHHHH
Confidence 011344444432 233455555554443333334457999999999852 345667777
Q ss_pred HHHhcccccCccCCCcEEEEEecCCCCccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhhcccccCHHHHHHHHhhc
Q 002386 694 MDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKC 773 (929)
Q Consensus 694 ld~~~~~~~~~~~~~~VivIattn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~d~~l~~LA~~t 773 (929)
|++... .+.||.+|+..+.|.+.+++ |+. .|+|..++.++..+.|+..+...++.++++.+..|+..+
T Consensus 143 LEEPP~---------~v~FILaTtd~~KIp~TIrS--RCq-~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A 210 (830)
T PRK07003 143 LEEPPP---------HVKFILATTDPQKIPVTVLS--RCL-QFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAA 210 (830)
T ss_pred HHhcCC---------CeEEEEEECChhhccchhhh--heE-EEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 777543 47888888999999999999 875 889999999999999999998888999999999999999
Q ss_pred CCCChhhHHHHHHHHHH
Q 002386 774 DGYDAYDLEILVDRTVH 790 (929)
Q Consensus 774 eG~s~~DL~~Lv~~A~~ 790 (929)
+| +.+|..++++.+..
T Consensus 211 ~G-smRdALsLLdQAia 226 (830)
T PRK07003 211 QG-SMRDALSLTDQAIA 226 (830)
T ss_pred CC-CHHHHHHHHHHHHH
Confidence 88 56677777776653
No 75
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.57 E-value=3.6e-14 Score=175.72 Aligned_cols=212 Identities=21% Similarity=0.296 Sum_probs=140.8
Q ss_pred ccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccccc-
Q 002386 555 SLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLS- 633 (929)
Q Consensus 555 ~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~- 633 (929)
++.|++.+++.+.+.+...... +...+.++||+||||||||++|+++|+.++ .++..+++..+.
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~---------~~~~~~~lll~GppG~GKT~lAk~iA~~l~------~~~~~i~~~~~~~ 385 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLR---------GKMKGPILCLVGPPGVGKTSLGKSIAKALN------RKFVRFSLGGVRD 385 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhh---------cCCCCceEEEECCCCCCHHHHHHHHHHHhc------CCeEEEeCCCccc
Confidence 3667888888888765422110 112234699999999999999999999997 566666654332
Q ss_pred --------cCchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHh-----ccc
Q 002386 634 --------LEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEY-----GEK 700 (929)
Q Consensus 634 --------~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~-----~~~ 700 (929)
..+.+.....+.+.|..+....| |+||||+|.+.+. ..+ . ..+.|+..+|.- ...
T Consensus 386 ~~~i~g~~~~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~---~~~----~----~~~aLl~~ld~~~~~~f~d~ 453 (775)
T TIGR00763 386 EAEIRGHRRTYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSS---FRG----D----PASALLEVLDPEQNNAFSDH 453 (775)
T ss_pred HHHHcCCCCceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCc---cCC----C----HHHHHHHhcCHHhcCccccc
Confidence 12233333445556666654445 9999999999731 111 1 123444444421 100
Q ss_pred -ccCccCCCcEEEEEecCCCCccccccccCCCcceEeeCCCCcHHHHHHHHHHHHh-----hc-----ccccCHHHHHHH
Q 002386 701 -RKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQ-----RR-----SLECSDEILLDV 769 (929)
Q Consensus 701 -~~~~~~~~~VivIattn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~-----~~-----~~~~~d~~l~~L 769 (929)
.......++++||+|+|..+.++++|++ ||. .|+|+.|+.+++.+|++.++. .. .+.++++.+..+
T Consensus 454 ~~~~~~d~s~v~~I~TtN~~~~i~~~L~~--R~~-vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i 530 (775)
T TIGR00763 454 YLDVPFDLSKVIFIATANSIDTIPRPLLD--RME-VIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLL 530 (775)
T ss_pred cCCceeccCCEEEEEecCCchhCCHHHhC--Cee-EEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHH
Confidence 0001122468999999999999999999 996 889999999999999988763 22 345788888887
Q ss_pred Hhh-cCCCChhhHHHHHHHHHHHHhhcc
Q 002386 770 ASK-CDGYDAYDLEILVDRTVHAAVGRY 796 (929)
Q Consensus 770 A~~-teG~s~~DL~~Lv~~A~~~a~~r~ 796 (929)
+.. |..+..++|+..+++.+..+..+.
T Consensus 531 ~~~~~~e~g~R~l~r~i~~~~~~~~~~~ 558 (775)
T TIGR00763 531 IKYYTREAGVRNLERQIEKICRKAAVKL 558 (775)
T ss_pred HHhcChhcCChHHHHHHHHHHHHHHHHH
Confidence 764 455677888887777776665543
No 76
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=3e-15 Score=157.59 Aligned_cols=89 Identities=37% Similarity=0.687 Sum_probs=87.1
Q ss_pred CCccCCCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHcCCceEEEeccccccccc
Q 002386 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYI 919 (929)
Q Consensus 840 ~~~w~dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~glnfIsVkg~ELl~kyI 919 (929)
...++.+||+......|+|.+++|+..|++|.+.++.+|.|+|||||||+|||++|+++|...|.||+.+..++|.+||+
T Consensus 128 ~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~kyi 207 (388)
T KOG0651|consen 128 NISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKYI 207 (388)
T ss_pred ccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhhc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHhh
Q 002386 920 GASEQAVRR 928 (929)
Q Consensus 920 G~SEq~VRd 928 (929)
|||.+-+||
T Consensus 208 GEsaRlIRe 216 (388)
T KOG0651|consen 208 GESARLIRD 216 (388)
T ss_pred ccHHHHHHH
Confidence 999999997
No 77
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.55 E-value=1.1e-13 Score=158.67 Aligned_cols=194 Identities=18% Similarity=0.246 Sum_probs=139.4
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCcc------------
Q 002386 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKD------------ 619 (929)
Q Consensus 552 ~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~------------ 619 (929)
+|.++.|++.++..+...+.. ...+..+||+||+||||||+|+.+|+.+.....
T Consensus 16 ~f~dvVGQe~iv~~L~~~i~~--------------~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC 81 (484)
T PRK14956 16 FFRDVIHQDLAIGALQNALKS--------------GKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSC 81 (484)
T ss_pred CHHHHhChHHHHHHHHHHHHc--------------CCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHH
Confidence 456788888887776654321 112345899999999999999999999875321
Q ss_pred ------ceeeEEEEeccccccCchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHH
Q 002386 620 ------LVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDI 693 (929)
Q Consensus 620 ------~~~~~~~V~~s~L~~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ 693 (929)
....++.++... ......++.....+..........|+||||+|.+.. ...+.|+..
T Consensus 82 ~~i~~g~~~dviEIdaas--~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~---------------~A~NALLKt 144 (484)
T PRK14956 82 LEITKGISSDVLEIDAAS--NRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTD---------------QSFNALLKT 144 (484)
T ss_pred HHHHccCCccceeechhh--cccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCH---------------HHHHHHHHH
Confidence 011234444422 122445555444444333344567999999999852 345666666
Q ss_pred HHHhcccccCccCCCcEEEEEecCCCCccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhhcccccCHHHHHHHHhhc
Q 002386 694 MDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKC 773 (929)
Q Consensus 694 ld~~~~~~~~~~~~~~VivIattn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~d~~l~~LA~~t 773 (929)
+++... .++||++|+.++.+++.+++ |+. .+.|.+++.++..+.++..+...++.++++.+..|+...
T Consensus 145 LEEPp~---------~viFILaTte~~kI~~TI~S--RCq-~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S 212 (484)
T PRK14956 145 LEEPPA---------HIVFILATTEFHKIPETILS--RCQ-DFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKG 212 (484)
T ss_pred hhcCCC---------ceEEEeecCChhhccHHHHh--hhh-eeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 665332 48888888889999999999 876 789999999999999999998888999999999999998
Q ss_pred CCCChhhHHHHHHHHH
Q 002386 774 DGYDAYDLEILVDRTV 789 (929)
Q Consensus 774 eG~s~~DL~~Lv~~A~ 789 (929)
+| +.||.-.+++.++
T Consensus 213 ~G-d~RdAL~lLeq~i 227 (484)
T PRK14956 213 DG-SVRDMLSFMEQAI 227 (484)
T ss_pred CC-hHHHHHHHHHHHH
Confidence 88 6777777777765
No 78
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.55 E-value=4.4e-15 Score=170.25 Aligned_cols=90 Identities=38% Similarity=0.697 Sum_probs=87.1
Q ss_pred CCCccCCCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHcCCceEEEecccccccc
Q 002386 839 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKY 918 (929)
Q Consensus 839 ~~~~w~dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~glnfIsVkg~ELl~ky 918 (929)
+...|+||||+++.++.|++.+++|+.++++|.+.++.++.|+|||||||||||++|+++|++++.+|+.|.+++++++|
T Consensus 178 p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~k~ 257 (438)
T PTZ00361 178 PLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQKY 257 (438)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhhhh
Confidence 35899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cChhhHHHhh
Q 002386 919 IGASEQAVRR 928 (929)
Q Consensus 919 IG~SEq~VRd 928 (929)
+|++++.+|+
T Consensus 258 ~Ge~~~~vr~ 267 (438)
T PTZ00361 258 LGDGPKLVRE 267 (438)
T ss_pred cchHHHHHHH
Confidence 9999999885
No 79
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=1.3e-13 Score=159.88 Aligned_cols=211 Identities=21% Similarity=0.296 Sum_probs=141.9
Q ss_pred ccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccccc-
Q 002386 555 SLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLS- 633 (929)
Q Consensus 555 ~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~- 633 (929)
+-.|++++++.|++.+.+-.... -..+.-++|+||||+|||+|++.||+.++ ..|+.++...+.
T Consensus 324 dHYGLekVKeRIlEyLAV~~l~~---------~~kGpILcLVGPPGVGKTSLgkSIA~al~------RkfvR~sLGGvrD 388 (782)
T COG0466 324 DHYGLEKVKERILEYLAVQKLTK---------KLKGPILCLVGPPGVGKTSLGKSIAKALG------RKFVRISLGGVRD 388 (782)
T ss_pred cccCchhHHHHHHHHHHHHHHhc---------cCCCcEEEEECCCCCCchhHHHHHHHHhC------CCEEEEecCcccc
Confidence 45678999999999886432211 11123478999999999999999999998 777877654432
Q ss_pred --------cCchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHH-----HHHHhccc
Q 002386 634 --------LEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVD-----IMDEYGEK 700 (929)
Q Consensus 634 --------~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~-----~ld~~~~~ 700 (929)
..+.|.+...+-+.+..|....| +++|||+|.+.. +..|. . ..++++.|.. +.|.|..-
T Consensus 389 EAEIRGHRRTYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~s---s~rGD-P---aSALLEVLDPEQN~~F~DhYLev 460 (782)
T COG0466 389 EAEIRGHRRTYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGS---SFRGD-P---ASALLEVLDPEQNNTFSDHYLEV 460 (782)
T ss_pred HHHhccccccccccCChHHHHHHHHhCCcCC-eEEeechhhccC---CCCCC-h---HHHHHhhcCHhhcCchhhccccC
Confidence 34556666667677777776666 999999999963 22222 1 1244444422 22222221
Q ss_pred ccCccCCCcEEEEEecCCCCccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhh-----c-----ccccCHHHHHHHH
Q 002386 701 RKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQR-----R-----SLECSDEILLDVA 770 (929)
Q Consensus 701 ~~~~~~~~~VivIattn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~-----~-----~~~~~d~~l~~LA 770 (929)
..+...|+||+|+|+.+.+|..|+. |+. +|++.-++.++..+|.+.++-. . .+.++|+.+..+.
T Consensus 461 ---~yDLS~VmFiaTANsl~tIP~PLlD--RME-iI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~~el~i~d~ai~~iI 534 (782)
T COG0466 461 ---PYDLSKVMFIATANSLDTIPAPLLD--RME-VIRLSGYTEDEKLEIAKRHLIPKQLKEHGLKKGELTITDEAIKDII 534 (782)
T ss_pred ---ccchhheEEEeecCccccCChHHhc--cee-eeeecCCChHHHHHHHHHhcchHHHHHcCCCccceeecHHHHHHHH
Confidence 1223479999999999999999999 988 8999999999999999987642 2 2447788777766
Q ss_pred hhc-CCCCh----hhHHHHHHHHHHHHhh
Q 002386 771 SKC-DGYDA----YDLEILVDRTVHAAVG 794 (929)
Q Consensus 771 ~~t-eG~s~----~DL~~Lv~~A~~~a~~ 794 (929)
+.. ..-.- +.|..+|+.++..-+.
T Consensus 535 ~~YTREAGVR~LeR~i~ki~RK~~~~i~~ 563 (782)
T COG0466 535 RYYTREAGVRNLEREIAKICRKAAKKILL 563 (782)
T ss_pred HHHhHhhhhhHHHHHHHHHHHHHHHHHHh
Confidence 542 11112 3455566665554443
No 80
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.51 E-value=2.2e-13 Score=159.44 Aligned_cols=194 Identities=16% Similarity=0.200 Sum_probs=142.5
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCc-----c-------
Q 002386 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHK-----D------- 619 (929)
Q Consensus 552 ~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~-----~------- 619 (929)
+|++++|++..++.+.+.+.. ...+..+||+||+|+||||+|+.+|+.+.... .
T Consensus 14 tFddVIGQe~vv~~L~~al~~--------------gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG 79 (700)
T PRK12323 14 DFTTLVGQEHVVRALTHALEQ--------------QRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCG 79 (700)
T ss_pred cHHHHcCcHHHHHHHHHHHHh--------------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCc
Confidence 467889999988887775431 12235589999999999999999999997521 0
Q ss_pred -----------ceeeEEEEeccccccCchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHH
Q 002386 620 -----------LVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTK 688 (929)
Q Consensus 620 -----------~~~~~~~V~~s~L~~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~ 688 (929)
....+++++... ...+++++..+..+..........|+||||+|.|.. .-.+
T Consensus 80 ~C~sC~~I~aG~hpDviEIdAas--~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~---------------~AaN 142 (700)
T PRK12323 80 QCRACTEIDAGRFVDYIEMDAAS--NRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTN---------------HAFN 142 (700)
T ss_pred ccHHHHHHHcCCCCcceEecccc--cCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCH---------------HHHH
Confidence 001344444432 234566666665554444445567999999999852 3455
Q ss_pred HHHHHHHHhcccccCccCCCcEEEEEecCCCCccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhhcccccCHHHHHH
Q 002386 689 FLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLD 768 (929)
Q Consensus 689 ~L~~~ld~~~~~~~~~~~~~~VivIattn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~d~~l~~ 768 (929)
.|+..|++... .+.||.+|+.++.|.+.+++ |+. .+.|..++.++..+.|+..+...++.++++.+..
T Consensus 143 ALLKTLEEPP~---------~v~FILaTtep~kLlpTIrS--RCq-~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~ 210 (700)
T PRK12323 143 AMLKTLEEPPE---------HVKFILATTDPQKIPVTVLS--RCL-QFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRL 210 (700)
T ss_pred HHHHhhccCCC---------CceEEEEeCChHhhhhHHHH--HHH-hcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 67777766432 47888888889999999999 875 8899999999999999998888888889988999
Q ss_pred HHhhcCCCChhhHHHHHHHHH
Q 002386 769 VASKCDGYDAYDLEILVDRTV 789 (929)
Q Consensus 769 LA~~teG~s~~DL~~Lv~~A~ 789 (929)
|+..++| ++++...+++.+.
T Consensus 211 IA~~A~G-s~RdALsLLdQai 230 (700)
T PRK12323 211 LAQAAQG-SMRDALSLTDQAI 230 (700)
T ss_pred HHHHcCC-CHHHHHHHHHHHH
Confidence 9988887 6777777777655
No 81
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=1.1e-14 Score=163.19 Aligned_cols=88 Identities=38% Similarity=0.706 Sum_probs=82.8
Q ss_pred CCccCCCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHcCCceEEEeccccccccc
Q 002386 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYI 919 (929)
Q Consensus 840 ~~~w~dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~glnfIsVkg~ELl~kyI 919 (929)
.+.|+|++||+.+|+.+++.+.||...+.+|..+. .+..|+||+||||+|||+||+|||.|++..|+.|+.++|.+||+
T Consensus 149 ~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr-~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLtsK~~ 227 (428)
T KOG0740|consen 149 NVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLR-EPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLTSKYV 227 (428)
T ss_pred cccccCCcchhhHHHHhhhhhhhcccchHhhhccc-cccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhhhhcc
Confidence 48999999999999999999999999999999864 34558999999999999999999999999999999999999999
Q ss_pred ChhhHHHhh
Q 002386 920 GASEQAVRR 928 (929)
Q Consensus 920 G~SEq~VRd 928 (929)
|++|+.||.
T Consensus 228 Ge~eK~vra 236 (428)
T KOG0740|consen 228 GESEKLVRA 236 (428)
T ss_pred ChHHHHHHH
Confidence 999999984
No 82
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.50 E-value=5.1e-13 Score=156.78 Aligned_cols=194 Identities=18% Similarity=0.241 Sum_probs=140.0
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCcc------------
Q 002386 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKD------------ 619 (929)
Q Consensus 552 ~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~------------ 619 (929)
+|+++.|++...+.+.+.+.. ...+..+||+||+|+|||++|+++|+.+.....
T Consensus 13 tFddVIGQe~vv~~L~~aI~~--------------grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC 78 (702)
T PRK14960 13 NFNELVGQNHVSRALSSALER--------------GRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATC 78 (702)
T ss_pred CHHHhcCcHHHHHHHHHHHHc--------------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHH
Confidence 467888999887777764421 223456899999999999999999999874211
Q ss_pred ------ceeeEEEEeccccccCchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHH
Q 002386 620 ------LVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDI 693 (929)
Q Consensus 620 ------~~~~~~~V~~s~L~~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ 693 (929)
....++.++.+.- ...+.++..+...-......+..|+||||+|.|.. ...+.|+..
T Consensus 79 ~~I~~g~hpDviEIDAAs~--~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~---------------~A~NALLKt 141 (702)
T PRK14960 79 KAVNEGRFIDLIEIDAASR--TKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLST---------------HSFNALLKT 141 (702)
T ss_pred HHHhcCCCCceEEeccccc--CCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCH---------------HHHHHHHHH
Confidence 1123444544322 23455555444333333334567999999999852 345567777
Q ss_pred HHHhcccccCccCCCcEEEEEecCCCCccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhhcccccCHHHHHHHHhhc
Q 002386 694 MDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKC 773 (929)
Q Consensus 694 ld~~~~~~~~~~~~~~VivIattn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~d~~l~~LA~~t 773 (929)
+++... .+.||.+|+.+..+++.+++ |+. .++|.+++.++..+.++..+.+.++.++++.+..++..+
T Consensus 142 LEEPP~---------~v~FILaTtd~~kIp~TIlS--RCq-~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S 209 (702)
T PRK14960 142 LEEPPE---------HVKFLFATTDPQKLPITVIS--RCL-QFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESA 209 (702)
T ss_pred HhcCCC---------CcEEEEEECChHhhhHHHHH--hhh-eeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 776432 36777777778888888887 775 889999999999999999999889999999999999998
Q ss_pred CCCChhhHHHHHHHHH
Q 002386 774 DGYDAYDLEILVDRTV 789 (929)
Q Consensus 774 eG~s~~DL~~Lv~~A~ 789 (929)
.| +.+++.++++.++
T Consensus 210 ~G-dLRdALnLLDQaI 224 (702)
T PRK14960 210 QG-SLRDALSLTDQAI 224 (702)
T ss_pred CC-CHHHHHHHHHHHH
Confidence 77 7778888777765
No 83
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.50 E-value=6.7e-13 Score=159.95 Aligned_cols=194 Identities=21% Similarity=0.247 Sum_probs=139.1
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccc-----------
Q 002386 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL----------- 620 (929)
Q Consensus 552 ~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~----------- 620 (929)
+|.+++|++..++.+.+.+.. ...+..+||+||+||||||+||++|+.+......
T Consensus 14 tFddIIGQe~Iv~~LknaI~~--------------~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC 79 (944)
T PRK14949 14 TFEQMVGQSHVLHALTNALTQ--------------QRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSC 79 (944)
T ss_pred CHHHhcCcHHHHHHHHHHHHh--------------CCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHH
Confidence 466888999888877664421 1223457999999999999999999999753110
Q ss_pred -------eeeEEEEeccccccCchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHH
Q 002386 621 -------VAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDI 693 (929)
Q Consensus 621 -------~~~~~~V~~s~L~~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ 693 (929)
...+++++... ......++..+..+......+...|+||||+|.|- ....+.|+..
T Consensus 80 ~~i~~g~~~DviEidAas--~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT---------------~eAqNALLKt 142 (944)
T PRK14949 80 VEIAQGRFVDLIEVDAAS--RTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLS---------------RSSFNALLKT 142 (944)
T ss_pred HHHhcCCCceEEEecccc--ccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcC---------------HHHHHHHHHH
Confidence 01122333321 12345555555444333333445699999999985 2556777888
Q ss_pred HHHhcccccCccCCCcEEEEEecCCCCccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhhcccccCHHHHHHHHhhc
Q 002386 694 MDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKC 773 (929)
Q Consensus 694 ld~~~~~~~~~~~~~~VivIattn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~d~~l~~LA~~t 773 (929)
|++... .+.||++|+.+..|.+.+++ |+. .++|.+++.++..+.|++.+...++.++++.+..|+..+
T Consensus 143 LEEPP~---------~vrFILaTTe~~kLl~TIlS--RCq-~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S 210 (944)
T PRK14949 143 LEEPPE---------HVKFLLATTDPQKLPVTVLS--RCL-QFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAA 210 (944)
T ss_pred HhccCC---------CeEEEEECCCchhchHHHHH--hhe-EEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 877543 36777778888889999998 764 789999999999999999888778889999999999998
Q ss_pred CCCChhhHHHHHHHHH
Q 002386 774 DGYDAYDLEILVDRTV 789 (929)
Q Consensus 774 eG~s~~DL~~Lv~~A~ 789 (929)
.| ++|++..+++.++
T Consensus 211 ~G-d~R~ALnLLdQal 225 (944)
T PRK14949 211 NG-SMRDALSLTDQAI 225 (944)
T ss_pred CC-CHHHHHHHHHHHH
Confidence 87 6777778887765
No 84
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.49 E-value=6e-13 Score=145.71 Aligned_cols=146 Identities=21% Similarity=0.307 Sum_probs=107.7
Q ss_pred ceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccccccCchhhHHHHHHHHHHHHHh----cCCcEEEEccccc
Q 002386 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALD----HAPSIVIFDNLDS 666 (929)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~~~~~~~~~~~l~~~f~~a~~----~~PsVL~LDEiD~ 666 (929)
.+++|||||||||||+|+.||+..+ ..|..++.-. ....+ ++.++++|+. ++..||||||++.
T Consensus 49 ~SmIl~GPPG~GKTTlA~liA~~~~------~~f~~~sAv~---~gvkd----lr~i~e~a~~~~~~gr~tiLflDEIHR 115 (436)
T COG2256 49 HSMILWGPPGTGKTTLARLIAGTTN------AAFEALSAVT---SGVKD----LREIIEEARKNRLLGRRTILFLDEIHR 115 (436)
T ss_pred ceeEEECCCCCCHHHHHHHHHHhhC------CceEEecccc---ccHHH----HHHHHHHHHHHHhcCCceEEEEehhhh
Confidence 4699999999999999999999988 6777776532 22333 5555555533 3467999999999
Q ss_pred cccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCCCcEEEEEec--CCCCccccccccCCCcceEeeCCCCcHH
Q 002386 667 IISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASA--QSLEKIPQSLTSSGRFDFHVQLPAPAAS 744 (929)
Q Consensus 667 L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~VivIatt--n~~~~L~~~L~~~~Rf~~~i~l~~Pd~~ 744 (929)
+-. ....+|+..++.- .|++|++| |+.-.++++|++ |.. ++.|.+.+.+
T Consensus 116 fnK---------------~QQD~lLp~vE~G-----------~iilIGATTENPsF~ln~ALlS--R~~-vf~lk~L~~~ 166 (436)
T COG2256 116 FNK---------------AQQDALLPHVENG-----------TIILIGATTENPSFELNPALLS--RAR-VFELKPLSSE 166 (436)
T ss_pred cCh---------------hhhhhhhhhhcCC-----------eEEEEeccCCCCCeeecHHHhh--hhh-eeeeecCCHH
Confidence 842 2335566666542 37777775 445589999999 655 8899999999
Q ss_pred HHHHHHHHHHh--hcccc-----cCHHHHHHHHhhcCCCCh
Q 002386 745 ERKAILEHEIQ--RRSLE-----CSDEILLDVASKCDGYDA 778 (929)
Q Consensus 745 eR~~IL~~~l~--~~~~~-----~~d~~l~~LA~~teG~s~ 778 (929)
+..+++++.+. .+++. ++++.+..++..+.|-..
T Consensus 167 di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R 207 (436)
T COG2256 167 DIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDAR 207 (436)
T ss_pred HHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHH
Confidence 99999998443 34444 778899999999888433
No 85
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=2.3e-14 Score=169.50 Aligned_cols=89 Identities=29% Similarity=0.554 Sum_probs=85.2
Q ss_pred CCCccCCCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHcCCceEEEecccccccc
Q 002386 839 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKY 918 (929)
Q Consensus 839 ~~~~w~dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~glnfIsVkg~ELl~ky 918 (929)
.++.+.|+.|++++|+.|+|.+. .+++|+.|.+.|.+.|+|+||.||||||||+||+|+|.|.|.+|+++.|+|++..+
T Consensus 306 t~V~FkDVAG~deAK~El~E~V~-fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~ 384 (774)
T KOG0731|consen 306 TGVKFKDVAGVDEAKEELMEFVK-FLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMF 384 (774)
T ss_pred CCCccccccCcHHHHHHHHHHHH-HhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHh
Confidence 45899999999999999999998 57999999999999999999999999999999999999999999999999999999
Q ss_pred cChhhHHHhh
Q 002386 919 IGASEQAVRR 928 (929)
Q Consensus 919 IG~SEq~VRd 928 (929)
+|.-..+|||
T Consensus 385 ~g~~asrvr~ 394 (774)
T KOG0731|consen 385 VGVGASRVRD 394 (774)
T ss_pred cccchHHHHH
Confidence 9998888886
No 86
>PRK06893 DNA replication initiation factor; Validated
Probab=99.49 E-value=4.7e-13 Score=142.44 Aligned_cols=167 Identities=20% Similarity=0.261 Sum_probs=113.5
Q ss_pred ceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccccccCchhhHHHHHHHHHHHHHhcCCcEEEEccccccccC
Q 002386 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISS 670 (929)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~ 670 (929)
..++||||||||||+|++++|+++.... ..+.|+++..... ...+.+... ....+|+|||++.+.+
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~---~~~~y~~~~~~~~--------~~~~~~~~~--~~~dlLilDDi~~~~~- 105 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQ---RTAIYIPLSKSQY--------FSPAVLENL--EQQDLVCLDDLQAVIG- 105 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcC---CCeEEeeHHHhhh--------hhHHHHhhc--ccCCEEEEeChhhhcC-
Confidence 3589999999999999999999875432 2345555542211 011222222 3567999999998853
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCCCcEEEEEecCCCCccc---cccccCCCcceEeeCCCCcHHHHH
Q 002386 671 SSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIP---QSLTSSGRFDFHVQLPAPAASERK 747 (929)
Q Consensus 671 ~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~VivIattn~~~~L~---~~L~~~~Rf~~~i~l~~Pd~~eR~ 747 (929)
+ ...... |...++....... .++++++...+..++ +.|.++.+++..+++++|+.++|.
T Consensus 106 --~------~~~~~~----l~~l~n~~~~~~~------~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~ 167 (229)
T PRK06893 106 --N------EEWELA----IFDLFNRIKEQGK------TLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKI 167 (229)
T ss_pred --C------hHHHHH----HHHHHHHHHHcCC------cEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHH
Confidence 1 111123 3344443332211 245566666666654 788885555678999999999999
Q ss_pred HHHHHHHhhcccccCHHHHHHHHhhcCCCChhhHHHHHHHHHH
Q 002386 748 AILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVH 790 (929)
Q Consensus 748 ~IL~~~l~~~~~~~~d~~l~~LA~~teG~s~~DL~~Lv~~A~~ 790 (929)
+|+++.+..+++.++++.+..|+...+| +.+.+..++++...
T Consensus 168 ~iL~~~a~~~~l~l~~~v~~~L~~~~~~-d~r~l~~~l~~l~~ 209 (229)
T PRK06893 168 IVLQRNAYQRGIELSDEVANFLLKRLDR-DMHTLFDALDLLDK 209 (229)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHHH
Confidence 9999999888999999999999999887 66677777776543
No 87
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.48 E-value=4e-13 Score=159.32 Aligned_cols=222 Identities=14% Similarity=0.193 Sum_probs=143.8
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCc----cceeeEEEE
Q 002386 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHK----DLVAHIVFV 627 (929)
Q Consensus 552 ~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~----~~~~~~~~V 627 (929)
+|+++.|.+..++.+...+ . .+.+.++||+||||||||++||++++.+.... ....+|+.+
T Consensus 63 ~f~~iiGqs~~i~~l~~al---~------------~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~i 127 (531)
T TIGR02902 63 SFDEIIGQEEGIKALKAAL---C------------GPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEI 127 (531)
T ss_pred CHHHeeCcHHHHHHHHHHH---h------------CCCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEE
Confidence 4667888888887776532 1 22346899999999999999999988654221 112578889
Q ss_pred eccccc--cCchhhHHHHHH---H-------HHH----------HHHhcCCcEEEEccccccccCCCCCCCCCCchhHHH
Q 002386 628 CCSRLS--LEKGPIIRQALS---N-------FIS----------EALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIA 685 (929)
Q Consensus 628 ~~s~L~--~~~~~~~~~~l~---~-------~f~----------~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~ 685 (929)
+|.... ..... ...+. . .|. ........+|||||+|.+.+ .
T Consensus 128 d~~~~~~~~~~~~--~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~~---------------~ 190 (531)
T TIGR02902 128 DATTARFDERGIA--DPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELHP---------------V 190 (531)
T ss_pred ccccccCCccccc--hhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhCCH---------------H
Confidence 986421 11000 00000 0 000 01112346999999999852 2
Q ss_pred HHHHHHHHHHHhc---------cccc-----------CccCCCcEEEEEecCCCCccccccccCCCcceEeeCCCCcHHH
Q 002386 686 LTKFLVDIMDEYG---------EKRK-----------SSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASE 745 (929)
Q Consensus 686 l~~~L~~~ld~~~---------~~~~-----------~~~~~~~VivIattn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~e 745 (929)
..+.|+..++... .... ........++.+|++.++.+++++++ |+. .+.|++++.++
T Consensus 191 ~q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrs--R~~-~I~f~pL~~ee 267 (531)
T TIGR02902 191 QMNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRS--RCV-EIFFRPLLDEE 267 (531)
T ss_pred HHHHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhh--hhh-eeeCCCCCHHH
Confidence 3344444443311 0000 00000123455667789999999999 876 78899999999
Q ss_pred HHHHHHHHHhhcccccCHHHHHHHHhhcCCCChhhHHHHHHHHHHHHhhccccCCccccccccccccccccccccc
Q 002386 746 RKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMH 821 (929)
Q Consensus 746 R~~IL~~~l~~~~~~~~d~~l~~LA~~teG~s~~DL~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~lt~edf~~al~ 821 (929)
+.+|++..+++.++.++++.++.++..+. +++++.++++.|+..+..+ ++..++.+|+.+++.
T Consensus 268 i~~Il~~~a~k~~i~is~~al~~I~~y~~--n~Rel~nll~~Aa~~A~~~-----------~~~~It~~dI~~vl~ 330 (531)
T TIGR02902 268 IKEIAKNAAEKIGINLEKHALELIVKYAS--NGREAVNIVQLAAGIALGE-----------GRKRILAEDIEWVAE 330 (531)
T ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHHhhh--hHHHHHHHHHHHHHHHhhC-----------CCcEEcHHHHHHHhC
Confidence 99999999998888899999998888765 7899999999998766543 123466666666654
No 88
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.48 E-value=6.6e-13 Score=157.21 Aligned_cols=223 Identities=17% Similarity=0.211 Sum_probs=139.8
Q ss_pred cccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccC---ccc-eeeEEEEec
Q 002386 554 SSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHH---KDL-VAHIVFVCC 629 (929)
Q Consensus 554 ~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~---~~~-~~~~~~V~~ 629 (929)
..|.+.+..+++|...|...+.. ..++..++|+|+||||||++++.++++|... ... ...+++|+|
T Consensus 755 D~LPhREeEIeeLasfL~paIkg----------sgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINC 824 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIKQ----------SGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEING 824 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHhc----------CCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeC
Confidence 46777888888888877644321 1222335699999999999999999988532 111 256889999
Q ss_pred cccccCch-----------------hhHHHHHHHHHHHHH--hcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHH
Q 002386 630 SRLSLEKG-----------------PIIRQALSNFISEAL--DHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFL 690 (929)
Q Consensus 630 s~L~~~~~-----------------~~~~~~l~~~f~~a~--~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L 690 (929)
..+..... ......+..+|.... .....||+|||+|.|... . + ..|
T Consensus 825 m~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK---~---------Q---DVL 889 (1164)
T PTZ00112 825 MNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITK---T---------Q---KVL 889 (1164)
T ss_pred CccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCcc---H---------H---HHH
Confidence 66442210 112334555565542 233569999999999731 0 1 223
Q ss_pred HHHHHHhcccccCccCCCcEEEEEecCC---CCccccccccCCCcce-EeeCCCCcHHHHHHHHHHHHhhcccccCHHHH
Q 002386 691 VDIMDEYGEKRKSSCGIGPIAFVASAQS---LEKIPQSLTSSGRFDF-HVQLPAPAASERKAILEHEIQRRSLECSDEIL 766 (929)
Q Consensus 691 ~~~ld~~~~~~~~~~~~~~VivIattn~---~~~L~~~L~~~~Rf~~-~i~l~~Pd~~eR~~IL~~~l~~~~~~~~d~~l 766 (929)
..+++...... ..+.||+.+|. ++.+++.+++ ||.. .+.|++|+.+++.+||+..+......++++++
T Consensus 890 YnLFR~~~~s~------SKLiLIGISNdlDLperLdPRLRS--RLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAI 961 (1164)
T PTZ00112 890 FTLFDWPTKIN------SKLVLIAISNTMDLPERLIPRCRS--RLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAI 961 (1164)
T ss_pred HHHHHHhhccC------CeEEEEEecCchhcchhhhhhhhh--ccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHH
Confidence 33333322111 15889999986 4456777877 6653 58899999999999999988864445788999
Q ss_pred HHHHhhcCCC--ChhhHHHHHHHHHHHHhhccccCCccccccccccccccccccccccc
Q 002386 767 LDVASKCDGY--DAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEF 823 (929)
Q Consensus 767 ~~LA~~teG~--s~~DL~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~lt~edf~~al~~~ 823 (929)
+.+|+..... .+|..-.+|++|+.. + +...++.+++.+|+...
T Consensus 962 ELIArkVAq~SGDARKALDILRrAgEi---k-----------egskVT~eHVrkAleei 1006 (1164)
T PTZ00112 962 QLCARKVANVSGDIRKALQICRKAFEN---K-----------RGQKIVPRDITEATNQL 1006 (1164)
T ss_pred HHHHHhhhhcCCHHHHHHHHHHHHHhh---c-----------CCCccCHHHHHHHHHHH
Confidence 9888854432 233333345555431 1 11256777777776544
No 89
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.48 E-value=3.5e-14 Score=155.42 Aligned_cols=86 Identities=16% Similarity=0.220 Sum_probs=72.7
Q ss_pred CccCCC-CCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHcCCceEEEeccccccccc
Q 002386 841 SGWDDV-GGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYI 919 (929)
Q Consensus 841 ~~w~dI-gGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~glnfIsVkg~ELl~kyI 919 (929)
..++++ ||+.-.+..++.......|.- ....++++|.|++||||||||||++|+|+|+++|.+||.++++||++||+
T Consensus 112 ~~f~~~~g~~~~~p~f~dk~~~hi~kn~--l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~v 189 (413)
T PLN00020 112 RSFDNLVGGYYIAPAFMDKVAVHIAKNF--LALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENA 189 (413)
T ss_pred cchhhhcCccccCHHHHHHHHHHHHhhh--hhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcC
Confidence 345666 888888888877665444321 12267899999999999999999999999999999999999999999999
Q ss_pred ChhhHHHhh
Q 002386 920 GASEQAVRR 928 (929)
Q Consensus 920 G~SEq~VRd 928 (929)
||||++||+
T Consensus 190 GEsEk~IR~ 198 (413)
T PLN00020 190 GEPGKLIRQ 198 (413)
T ss_pred CcHHHHHHH
Confidence 999999996
No 90
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.48 E-value=6.6e-13 Score=140.51 Aligned_cols=180 Identities=22% Similarity=0.275 Sum_probs=132.8
Q ss_pred ccccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEecc
Q 002386 551 SNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCS 630 (929)
Q Consensus 551 ~~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s 630 (929)
.+++++.|++.+.+-+.+.+.. . ...++|||||||||||+.|+++|+++.........+...+.+
T Consensus 33 kt~de~~gQe~vV~~L~~a~~~--~-------------~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaS 97 (346)
T KOG0989|consen 33 KTFDELAGQEHVVQVLKNALLR--R-------------ILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNAS 97 (346)
T ss_pred CcHHhhcchHHHHHHHHHHHhh--c-------------CCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccc
Confidence 4567788888888877775532 1 114699999999999999999999997543333344455666
Q ss_pred ccccCchhhHHHHHHHHHHHHHh------cC----CcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccc
Q 002386 631 RLSLEKGPIIRQALSNFISEALD------HA----PSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEK 700 (929)
Q Consensus 631 ~L~~~~~~~~~~~l~~~f~~a~~------~~----PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~ 700 (929)
+-.|..+. +..+.. |+.... .. +.|++|||+|.+.. .-...|.+.|+.+..
T Consensus 98 derGisvv--r~Kik~-fakl~~~~~~~~~~~~~~fKiiIlDEcdsmts---------------daq~aLrr~mE~~s~- 158 (346)
T KOG0989|consen 98 DERGISVV--REKIKN-FAKLTVLLKRSDGYPCPPFKIIILDECDSMTS---------------DAQAALRRTMEDFSR- 158 (346)
T ss_pred ccccccch--hhhhcC-HHHHhhccccccCCCCCcceEEEEechhhhhH---------------HHHHHHHHHHhcccc-
Confidence 66555432 222221 222211 11 25999999999862 445678888887553
Q ss_pred ccCccCCCcEEEEEecCCCCccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhhcccccCHHHHHHHHhhcCC
Q 002386 701 RKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDG 775 (929)
Q Consensus 701 ~~~~~~~~~VivIattn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~d~~l~~LA~~teG 775 (929)
.+.||..||..+.|+..+.+ |.. .+.|++...+.....|+....+.++.++++.+..++...+|
T Consensus 159 --------~trFiLIcnylsrii~pi~S--RC~-KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~G 222 (346)
T KOG0989|consen 159 --------TTRFILICNYLSRIIRPLVS--RCQ-KFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDG 222 (346)
T ss_pred --------ceEEEEEcCChhhCChHHHh--hHH-HhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC
Confidence 37889999999999999999 877 77899998888888999999999999999999999999888
No 91
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.47 E-value=1.3e-12 Score=152.20 Aligned_cols=193 Identities=19% Similarity=0.261 Sum_probs=127.7
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCcc------------
Q 002386 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKD------------ 619 (929)
Q Consensus 552 ~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~------------ 619 (929)
+++++.|++...+.+...+. . ...+.++||+|||||||||+|+++|+.+.....
T Consensus 12 ~~~divGq~~i~~~L~~~i~---~-----------~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c 77 (472)
T PRK14962 12 TFSEVVGQDHVKKLIINALK---K-----------NSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRAC 77 (472)
T ss_pred CHHHccCcHHHHHHHHHHHH---c-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHH
Confidence 35678888776555544221 1 123356899999999999999999999864211
Q ss_pred ------ceeeEEEEeccccccCchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHH
Q 002386 620 ------LVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDI 693 (929)
Q Consensus 620 ------~~~~~~~V~~s~L~~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ 693 (929)
....+..++.+. ......+++....+-.........|+||||+|.+.. ...+.|+..
T Consensus 78 ~~i~~g~~~dv~el~aa~--~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~---------------~a~~~LLk~ 140 (472)
T PRK14962 78 RSIDEGTFMDVIELDAAS--NRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTK---------------EAFNALLKT 140 (472)
T ss_pred HHHhcCCCCccEEEeCcc--cCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHH---------------HHHHHHHHH
Confidence 011344444432 222344443222111111123456999999999841 234556666
Q ss_pred HHHhcccccCccCCCcEEEEEecCCCCccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhhcccccCHHHHHHHHhhc
Q 002386 694 MDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKC 773 (929)
Q Consensus 694 ld~~~~~~~~~~~~~~VivIattn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~d~~l~~LA~~t 773 (929)
++.... .+++|++++.+..+++++.+ |+. .+.|.+++.++...+++..+...++.++++.+..|+..+
T Consensus 141 LE~p~~---------~vv~Ilattn~~kl~~~L~S--R~~-vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s 208 (472)
T PRK14962 141 LEEPPS---------HVVFVLATTNLEKVPPTIIS--RCQ-VIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRA 208 (472)
T ss_pred HHhCCC---------cEEEEEEeCChHhhhHHHhc--CcE-EEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Confidence 665332 36666666677789999999 876 899999999999999999998888899999999999988
Q ss_pred CCCChhhHHHHHHHH
Q 002386 774 DGYDAYDLEILVDRT 788 (929)
Q Consensus 774 eG~s~~DL~~Lv~~A 788 (929)
.| +.+++.++++.+
T Consensus 209 ~G-dlR~aln~Le~l 222 (472)
T PRK14962 209 SG-GLRDALTMLEQV 222 (472)
T ss_pred CC-CHHHHHHHHHHH
Confidence 76 455555555543
No 92
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.47 E-value=7.4e-13 Score=155.66 Aligned_cols=195 Identities=18% Similarity=0.222 Sum_probs=140.2
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccc-----------
Q 002386 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL----------- 620 (929)
Q Consensus 552 ~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~----------- 620 (929)
+|+++.|++..++.+.+.+.. ...+..+||+||+|+|||++|+++|+.+......
T Consensus 14 ~f~divGq~~v~~~L~~~~~~--------------~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C 79 (509)
T PRK14958 14 CFQEVIGQAPVVRALSNALDQ--------------QYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENC 79 (509)
T ss_pred CHHHhcCCHHHHHHHHHHHHh--------------CCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHH
Confidence 467889999988888775521 1223458999999999999999999999753211
Q ss_pred -------eeeEEEEeccccccCchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHH
Q 002386 621 -------VAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDI 693 (929)
Q Consensus 621 -------~~~~~~V~~s~L~~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ 693 (929)
...+++++... ...+++++..+..+-.........|+||||+|++.. ...+.|+..
T Consensus 80 ~~i~~g~~~d~~eidaas--~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~---------------~a~naLLk~ 142 (509)
T PRK14958 80 REIDEGRFPDLFEVDAAS--RTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSG---------------HSFNALLKT 142 (509)
T ss_pred HHHhcCCCceEEEEcccc--cCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCH---------------HHHHHHHHH
Confidence 12255555432 234555555444332222233456999999999852 345667777
Q ss_pred HHHhcccccCccCCCcEEEEEecCCCCccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhhcccccCHHHHHHHHhhc
Q 002386 694 MDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKC 773 (929)
Q Consensus 694 ld~~~~~~~~~~~~~~VivIattn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~d~~l~~LA~~t 773 (929)
|++... .+.||.+|+.+..+++.+++ |+. .++|.+++.++..+.++..++..++.++++.+..++..+
T Consensus 143 LEepp~---------~~~fIlattd~~kl~~tI~S--Rc~-~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s 210 (509)
T PRK14958 143 LEEPPS---------HVKFILATTDHHKLPVTVLS--RCL-QFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAA 210 (509)
T ss_pred HhccCC---------CeEEEEEECChHhchHHHHH--Hhh-hhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 776432 36677777778888888888 764 788999999999999999998888999999999999988
Q ss_pred CCCChhhHHHHHHHHHH
Q 002386 774 DGYDAYDLEILVDRTVH 790 (929)
Q Consensus 774 eG~s~~DL~~Lv~~A~~ 790 (929)
.| +.+++.++++.++.
T Consensus 211 ~G-slR~al~lLdq~ia 226 (509)
T PRK14958 211 NG-SVRDALSLLDQSIA 226 (509)
T ss_pred CC-cHHHHHHHHHHHHh
Confidence 76 78888888877653
No 93
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.47 E-value=3.4e-13 Score=157.81 Aligned_cols=178 Identities=19% Similarity=0.314 Sum_probs=124.8
Q ss_pred ceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccccccCchhhHHHHHHHHHHHHHhcCCcEEEEccccccccC
Q 002386 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISS 670 (929)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~ 670 (929)
.+++||||+|+|||+|++++++++..... ...+.|+++.++.......+.......|.... ..+.+|+|||+|.+.+.
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~-~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~-~~~dlLiiDDi~~l~~~ 226 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNP-NAKVVYVTSEKFTNDFVNALRNNTMEEFKEKY-RSVDVLLIDDIQFLAGK 226 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCC-CCeEEEEEHHHHHHHHHHHHHcCcHHHHHHHH-hcCCEEEEehhhhhcCC
Confidence 45999999999999999999999864321 25688999987765444443322122233222 36789999999998531
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCCCcEEEEEecCCCCc---cccccccCCCcc--eEeeCCCCcHHH
Q 002386 671 SSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEK---IPQSLTSSGRFD--FHVQLPAPAASE 745 (929)
Q Consensus 671 ~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~VivIattn~~~~---L~~~L~~~~Rf~--~~i~l~~Pd~~e 745 (929)
......+... ++...... ..+++++...+.. +++.|.+ ||. ..+.+.+|+.++
T Consensus 227 ---------~~~~~~l~~~----~n~l~~~~-------~~iiits~~~p~~l~~l~~~l~S--Rl~~gl~v~i~~pd~~~ 284 (450)
T PRK00149 227 ---------ERTQEEFFHT----FNALHEAG-------KQIVLTSDRPPKELPGLEERLRS--RFEWGLTVDIEPPDLET 284 (450)
T ss_pred ---------HHHHHHHHHH----HHHHHHCC-------CcEEEECCCCHHHHHHHHHHHHh--HhcCCeeEEecCCCHHH
Confidence 0111233333 33333221 1355555555544 6688888 885 689999999999
Q ss_pred HHHHHHHHHhhcccccCHHHHHHHHhhcCCCChhhHHHHHHHHHHHHh
Q 002386 746 RKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAAV 793 (929)
Q Consensus 746 R~~IL~~~l~~~~~~~~d~~l~~LA~~teG~s~~DL~~Lv~~A~~~a~ 793 (929)
|.+|++..+...++.++++.++.||....| +.++|..++.+....+.
T Consensus 285 r~~il~~~~~~~~~~l~~e~l~~ia~~~~~-~~R~l~~~l~~l~~~~~ 331 (450)
T PRK00149 285 RIAILKKKAEEEGIDLPDEVLEFIAKNITS-NVRELEGALNRLIAYAS 331 (450)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHcCcCC-CHHHHHHHHHHHHHHHH
Confidence 999999999988899999999999999887 77888888887765543
No 94
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.47 E-value=1.3e-12 Score=151.41 Aligned_cols=195 Identities=17% Similarity=0.233 Sum_probs=141.3
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCcc------------
Q 002386 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKD------------ 619 (929)
Q Consensus 552 ~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~------------ 619 (929)
+|.++.|++...+.+.+.+.. ...+.++||+||+|+||||+|+.+|+.+....+
T Consensus 11 ~f~dliGQe~vv~~L~~a~~~--------------~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C 76 (491)
T PRK14964 11 SFKDLVGQDVLVRILRNAFTL--------------NKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNC 76 (491)
T ss_pred CHHHhcCcHHHHHHHHHHHHc--------------CCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHH
Confidence 467888998887776653321 233467999999999999999999998753211
Q ss_pred ------ceeeEEEEeccccccCchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHH
Q 002386 620 ------LVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDI 693 (929)
Q Consensus 620 ------~~~~~~~V~~s~L~~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ 693 (929)
....+++++.++- ...++++..+...-.........|+||||+|.+.. .-.+.|+..
T Consensus 77 ~~i~~~~~~Dv~eidaas~--~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~---------------~A~NaLLK~ 139 (491)
T PRK14964 77 ISIKNSNHPDVIEIDAASN--TSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSN---------------SAFNALLKT 139 (491)
T ss_pred HHHhccCCCCEEEEecccC--CCHHHHHHHHHHHHhccccCCceEEEEeChHhCCH---------------HHHHHHHHH
Confidence 1234566666532 24555555544433222334556999999998841 334566777
Q ss_pred HHHhcccccCccCCCcEEEEEecCCCCccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhhcccccCHHHHHHHHhhc
Q 002386 694 MDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKC 773 (929)
Q Consensus 694 ld~~~~~~~~~~~~~~VivIattn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~d~~l~~LA~~t 773 (929)
+++... .+.+|.+|+..+.+++.+++ |+. .++|.+++.++..+.++..+++.+..++++.+..++..+
T Consensus 140 LEePp~---------~v~fIlatte~~Kl~~tI~S--Rc~-~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s 207 (491)
T PRK14964 140 LEEPAP---------HVKFILATTEVKKIPVTIIS--RCQ-RFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENS 207 (491)
T ss_pred HhCCCC---------CeEEEEEeCChHHHHHHHHH--hhe-eeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 766432 36777777778889999998 765 789999999999999999999889999999999999998
Q ss_pred CCCChhhHHHHHHHHHH
Q 002386 774 DGYDAYDLEILVDRTVH 790 (929)
Q Consensus 774 eG~s~~DL~~Lv~~A~~ 790 (929)
+| +.+++..+++.+..
T Consensus 208 ~G-slR~alslLdqli~ 223 (491)
T PRK14964 208 SG-SMRNALFLLEQAAI 223 (491)
T ss_pred CC-CHHHHHHHHHHHHH
Confidence 76 77788777777653
No 95
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.46 E-value=1.7e-12 Score=148.00 Aligned_cols=226 Identities=19% Similarity=0.223 Sum_probs=142.9
Q ss_pred ccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCc---cceeeEEEEeccc
Q 002386 555 SLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHK---DLVAHIVFVCCSR 631 (929)
Q Consensus 555 ~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~---~~~~~~~~V~~s~ 631 (929)
.+.|.+..++++...+..... ...+.+++|+||||||||++++++++.+.... .....+++++|..
T Consensus 16 ~l~gRe~e~~~l~~~l~~~~~-----------~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~ 84 (365)
T TIGR02928 16 RIVHRDEQIEELAKALRPILR-----------GSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQI 84 (365)
T ss_pred CCCCcHHHHHHHHHHHHHHHc-----------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCC
Confidence 567899999999887754332 12345799999999999999999999875321 1125688999976
Q ss_pred cccCc--hh------------------hHHHHHHHHHHHHH-hcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHH
Q 002386 632 LSLEK--GP------------------IIRQALSNFISEAL-DHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFL 690 (929)
Q Consensus 632 L~~~~--~~------------------~~~~~l~~~f~~a~-~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L 690 (929)
..+.. .. ...+.+..++.... ...+.||+|||+|.+.. .. ..++..|
T Consensus 85 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~---~~---------~~~L~~l 152 (365)
T TIGR02928 85 LDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVG---DD---------DDLLYQL 152 (365)
T ss_pred CCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhcc---CC---------cHHHHhH
Confidence 43211 00 11222333333332 24467999999999962 10 0233333
Q ss_pred HHHHHHhcccccCccCCCcEEEEEecCCCC---ccccccccCCCcc-eEeeCCCCcHHHHHHHHHHHHhh--cccccCHH
Q 002386 691 VDIMDEYGEKRKSSCGIGPIAFVASAQSLE---KIPQSLTSSGRFD-FHVQLPAPAASERKAILEHEIQR--RSLECSDE 764 (929)
Q Consensus 691 ~~~ld~~~~~~~~~~~~~~VivIattn~~~---~L~~~L~~~~Rf~-~~i~l~~Pd~~eR~~IL~~~l~~--~~~~~~d~ 764 (929)
.+..+..... ..++.+|+++|.++ .+++.+.+ ||. ..++|++++.+++.+|++..+.. ....++++
T Consensus 153 ~~~~~~~~~~------~~~v~lI~i~n~~~~~~~l~~~~~s--~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~ 224 (365)
T TIGR02928 153 SRARSNGDLD------NAKVGVIGISNDLKFRENLDPRVKS--SLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDG 224 (365)
T ss_pred hccccccCCC------CCeEEEEEEECCcchHhhcCHHHhc--cCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChh
Confidence 3321111100 02588888888765 46777776 664 67999999999999999998863 22336677
Q ss_pred HHHHHHhh---cCCCChhhHHHHHHHHHHHHhhccccCCccccccccccccccccccccccc
Q 002386 765 ILLDVASK---CDGYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEF 823 (929)
Q Consensus 765 ~l~~LA~~---teG~s~~DL~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~lt~edf~~al~~~ 823 (929)
.+..++.. +.| .++....+|++|...|..+ +...++.+++.+|+...
T Consensus 225 ~l~~i~~~~~~~~G-d~R~al~~l~~a~~~a~~~-----------~~~~it~~~v~~a~~~~ 274 (365)
T TIGR02928 225 VIPLCAALAAQEHG-DARKAIDLLRVAGEIAERE-----------GAERVTEDHVEKAQEKI 274 (365)
T ss_pred HHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHc-----------CCCCCCHHHHHHHHHHH
Confidence 66655544 345 4455556777877666544 22568888888777654
No 96
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.46 E-value=1.7e-12 Score=154.69 Aligned_cols=194 Identities=20% Similarity=0.265 Sum_probs=140.4
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccc-----------
Q 002386 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL----------- 620 (929)
Q Consensus 552 ~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~----------- 620 (929)
+|.+++|++..++.+.+.+.. ...+..+||+||+|+||||+|+.+|+.+......
T Consensus 14 ~f~divGQe~vv~~L~~~l~~--------------~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C 79 (647)
T PRK07994 14 TFAEVVGQEHVLTALANALDL--------------GRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNC 79 (647)
T ss_pred CHHHhcCcHHHHHHHHHHHHc--------------CCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHH
Confidence 467888999888877664421 1223457999999999999999999998753210
Q ss_pred -------eeeEEEEeccccccCchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHH
Q 002386 621 -------VAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDI 693 (929)
Q Consensus 621 -------~~~~~~V~~s~L~~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ 693 (929)
...++.++... ...++.++..+..+......+...|+||||+|.|.. .-.+.|+..
T Consensus 80 ~~i~~g~~~D~ieidaas--~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~---------------~a~NALLKt 142 (647)
T PRK07994 80 REIEQGRFVDLIEIDAAS--RTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSR---------------HSFNALLKT 142 (647)
T ss_pred HHHHcCCCCCceeecccc--cCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCH---------------HHHHHHHHH
Confidence 01234444432 123555666555444333344567999999999852 456677777
Q ss_pred HHHhcccccCccCCCcEEEEEecCCCCccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhhcccccCHHHHHHHHhhc
Q 002386 694 MDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKC 773 (929)
Q Consensus 694 ld~~~~~~~~~~~~~~VivIattn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~d~~l~~LA~~t 773 (929)
|++... .+.||.+|+.++.|.+.+++ |+ ..++|.+++.++..+.|+..+...++.+++..+..|+..+
T Consensus 143 LEEPp~---------~v~FIL~Tt~~~kLl~TI~S--RC-~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s 210 (647)
T PRK07994 143 LEEPPE---------HVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAA 210 (647)
T ss_pred HHcCCC---------CeEEEEecCCccccchHHHh--hh-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 877543 47777778888899999999 85 4899999999999999999888778888999999999988
Q ss_pred CCCChhhHHHHHHHHH
Q 002386 774 DGYDAYDLEILVDRTV 789 (929)
Q Consensus 774 eG~s~~DL~~Lv~~A~ 789 (929)
.| +.++...+++.++
T Consensus 211 ~G-s~R~Al~lldqai 225 (647)
T PRK07994 211 DG-SMRDALSLTDQAI 225 (647)
T ss_pred CC-CHHHHHHHHHHHH
Confidence 87 6667777776654
No 97
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.46 E-value=1.4e-12 Score=154.50 Aligned_cols=195 Identities=18% Similarity=0.215 Sum_probs=138.2
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccc-----------
Q 002386 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL----------- 620 (929)
Q Consensus 552 ~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~----------- 620 (929)
+|.+++|++..++.+.+.+.. ...+..+||+||+|+|||++|+++|+.+......
T Consensus 14 tFddIIGQe~vv~~L~~ai~~--------------~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sC 79 (709)
T PRK08691 14 TFADLVGQEHVVKALQNALDE--------------GRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSC 79 (709)
T ss_pred CHHHHcCcHHHHHHHHHHHHc--------------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHH
Confidence 467889999988887775431 1234569999999999999999999998643210
Q ss_pred -------eeeEEEEeccccccCchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHH
Q 002386 621 -------VAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDI 693 (929)
Q Consensus 621 -------~~~~~~V~~s~L~~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ 693 (929)
...++.++... ....+.++..+...-.........|+||||+|.+- ....+.|+..
T Consensus 80 r~i~~g~~~DvlEidaAs--~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls---------------~~A~NALLKt 142 (709)
T PRK08691 80 TQIDAGRYVDLLEIDAAS--NTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLS---------------KSAFNAMLKT 142 (709)
T ss_pred HHHhccCccceEEEeccc--cCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccC---------------HHHHHHHHHH
Confidence 01223343322 22234444444332212222345699999999874 1334567777
Q ss_pred HHHhcccccCccCCCcEEEEEecCCCCccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhhcccccCHHHHHHHHhhc
Q 002386 694 MDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKC 773 (929)
Q Consensus 694 ld~~~~~~~~~~~~~~VivIattn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~d~~l~~LA~~t 773 (929)
|++... .+.||++++.+..+.+.+++ |+. .|.|++++.++..+.|+..+...++.++++.+..|+..+
T Consensus 143 LEEPp~---------~v~fILaTtd~~kL~~TIrS--RC~-~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A 210 (709)
T PRK08691 143 LEEPPE---------HVKFILATTDPHKVPVTVLS--RCL-QFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAA 210 (709)
T ss_pred HHhCCC---------CcEEEEEeCCccccchHHHH--HHh-hhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHh
Confidence 776432 36777777888889888887 775 788999999999999999999889999999999999998
Q ss_pred CCCChhhHHHHHHHHHH
Q 002386 774 DGYDAYDLEILVDRTVH 790 (929)
Q Consensus 774 eG~s~~DL~~Lv~~A~~ 790 (929)
.| +.+++..+++.++.
T Consensus 211 ~G-slRdAlnLLDqaia 226 (709)
T PRK08691 211 AG-SMRDALSLLDQAIA 226 (709)
T ss_pred CC-CHHHHHHHHHHHHH
Confidence 76 78888888887764
No 98
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.45 E-value=2.4e-12 Score=150.37 Aligned_cols=196 Identities=22% Similarity=0.247 Sum_probs=137.6
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccc-----------
Q 002386 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL----------- 620 (929)
Q Consensus 552 ~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~----------- 620 (929)
+|.++.|++..+..+...+.. ...+.++||+||+||||||+|+++|+.+......
T Consensus 19 ~f~dliGq~~vv~~L~~ai~~--------------~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~ 84 (507)
T PRK06645 19 NFAELQGQEVLVKVLSYTILN--------------DRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQ 84 (507)
T ss_pred CHHHhcCcHHHHHHHHHHHHc--------------CCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCC
Confidence 456788888887766653321 2234679999999999999999999999753210
Q ss_pred -----------eeeEEEEeccccccCchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHH
Q 002386 621 -----------VAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKF 689 (929)
Q Consensus 621 -----------~~~~~~V~~s~L~~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~ 689 (929)
...+++++... ....++++..+...-.........|+||||+|.+.. ...+.
T Consensus 85 C~~C~~i~~~~h~Dv~eidaas--~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~---------------~a~na 147 (507)
T PRK06645 85 CTNCISFNNHNHPDIIEIDAAS--KTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSK---------------GAFNA 147 (507)
T ss_pred ChHHHHHhcCCCCcEEEeeccC--CCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCH---------------HHHHH
Confidence 11233444322 223445554443332222223456999999998841 33455
Q ss_pred HHHHHHHhcccccCccCCCcEEEEEecCCCCccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhhcccccCHHHHHHH
Q 002386 690 LVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDV 769 (929)
Q Consensus 690 L~~~ld~~~~~~~~~~~~~~VivIattn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~d~~l~~L 769 (929)
|+..+++... .+++|++|+..+.+++.+.+ |+. .++|.+++.++..++++..++..+..++++.+..+
T Consensus 148 LLk~LEepp~---------~~vfI~aTte~~kI~~tI~S--Rc~-~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~I 215 (507)
T PRK06645 148 LLKTLEEPPP---------HIIFIFATTEVQKIPATIIS--RCQ-RYDLRRLSFEEIFKLLEYITKQENLKTDIEALRII 215 (507)
T ss_pred HHHHHhhcCC---------CEEEEEEeCChHHhhHHHHh--cce-EEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 6666665322 36777777778889999988 774 78999999999999999999988888999999999
Q ss_pred HhhcCCCChhhHHHHHHHHHHH
Q 002386 770 ASKCDGYDAYDLEILVDRTVHA 791 (929)
Q Consensus 770 A~~teG~s~~DL~~Lv~~A~~~ 791 (929)
+..++| +.+++..+++.++..
T Consensus 216 a~~s~G-slR~al~~Ldkai~~ 236 (507)
T PRK06645 216 AYKSEG-SARDAVSILDQAASM 236 (507)
T ss_pred HHHcCC-CHHHHHHHHHHHHHh
Confidence 998887 788888888887543
No 99
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=6.5e-14 Score=156.12 Aligned_cols=88 Identities=31% Similarity=0.546 Sum_probs=85.2
Q ss_pred CCccCCCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHcCCceEEEeccccccccc
Q 002386 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYI 919 (929)
Q Consensus 840 ~~~w~dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~glnfIsVkg~ELl~kyI 919 (929)
++.++|+-|.+++|+.|.|+++ .+|.|..|.+.|-++|+|+||.||||||||+||||+|.|.|.+|+...|+|+=..||
T Consensus 300 nv~F~dVkG~DEAK~ELeEiVe-fLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~V 378 (752)
T KOG0734|consen 300 NVTFEDVKGVDEAKQELEEIVE-FLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMFV 378 (752)
T ss_pred ccccccccChHHHHHHHHHHHH-HhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhhh
Confidence 5889999999999999999998 479999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHhh
Q 002386 920 GASEQAVRR 928 (929)
Q Consensus 920 G~SEq~VRd 928 (929)
|.-.++|||
T Consensus 379 GvGArRVRd 387 (752)
T KOG0734|consen 379 GVGARRVRD 387 (752)
T ss_pred cccHHHHHH
Confidence 999999997
No 100
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.45 E-value=7.6e-13 Score=152.91 Aligned_cols=177 Identities=20% Similarity=0.342 Sum_probs=121.1
Q ss_pred ceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccccccCchhhHHH-HHHHHHHHHHhcCCcEEEEcccccccc
Q 002386 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQ-ALSNFISEALDHAPSIVIFDNLDSIIS 669 (929)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~~~~~~~~~~-~l~~~f~~a~~~~PsVL~LDEiD~L~~ 669 (929)
.+++||||+|+|||+|++++++++..... ...++|+++.++.......... .+.. |.... ..+.+|+|||+|.+.+
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~-~~~v~yi~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~dlLiiDDi~~l~~ 213 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNP-NAKVVYVSSEKFTNDFVNALRNNKMEE-FKEKY-RSVDLLLIDDIQFLAG 213 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCC-CCcEEEEEHHHHHHHHHHHHHcCCHHH-HHHHH-HhCCEEEEehhhhhcC
Confidence 45999999999999999999999854321 1567888887765433322221 1111 22222 3467999999998853
Q ss_pred CCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCCCcEEEEEecCCCCc---cccccccCCCcc--eEeeCCCCcHH
Q 002386 670 SSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEK---IPQSLTSSGRFD--FHVQLPAPAAS 744 (929)
Q Consensus 670 ~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~VivIattn~~~~---L~~~L~~~~Rf~--~~i~l~~Pd~~ 744 (929)
. ......+. ..++...... ..+++++...+.. +++.+.+ ||. ..+++++|+.+
T Consensus 214 ~---------~~~~~~l~----~~~n~~~~~~-------~~iiits~~~p~~l~~l~~~l~S--Rl~~g~~v~i~~pd~~ 271 (405)
T TIGR00362 214 K---------ERTQEEFF----HTFNALHENG-------KQIVLTSDRPPKELPGLEERLRS--RFEWGLVVDIEPPDLE 271 (405)
T ss_pred C---------HHHHHHHH----HHHHHHHHCC-------CCEEEecCCCHHHHhhhhhhhhh--hccCCeEEEeCCCCHH
Confidence 1 01112333 3333332221 1345555555444 5677888 775 57999999999
Q ss_pred HHHHHHHHHHhhcccccCHHHHHHHHhhcCCCChhhHHHHHHHHHHHHh
Q 002386 745 ERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAAV 793 (929)
Q Consensus 745 eR~~IL~~~l~~~~~~~~d~~l~~LA~~teG~s~~DL~~Lv~~A~~~a~ 793 (929)
+|.+|++..++..++.++++.++.+|....+ +.++|+.++.+....+.
T Consensus 272 ~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~-~~r~l~~~l~~l~~~a~ 319 (405)
T TIGR00362 272 TRLAILQKKAEEEGLELPDEVLEFIAKNIRS-NVRELEGALNRLLAYAS 319 (405)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence 9999999999988999999999999998877 77888888888765553
No 101
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.44 E-value=8.8e-14 Score=158.37 Aligned_cols=90 Identities=41% Similarity=0.738 Sum_probs=86.6
Q ss_pred CCCccCCCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHcCCceEEEecccccccc
Q 002386 839 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKY 918 (929)
Q Consensus 839 ~~~~w~dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~glnfIsVkg~ELl~ky 918 (929)
+.+.|+|+||+++.++.|++.+++|..+++.|...++.++.|+|||||||||||++|+++|++++.+|+.+.++++..+|
T Consensus 117 p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~~~ 196 (364)
T TIGR01242 117 PNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVRKY 196 (364)
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHHHh
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cChhhHHHhh
Q 002386 919 IGASEQAVRR 928 (929)
Q Consensus 919 IG~SEq~VRd 928 (929)
+|++++.+|+
T Consensus 197 ~g~~~~~i~~ 206 (364)
T TIGR01242 197 IGEGARLVRE 206 (364)
T ss_pred hhHHHHHHHH
Confidence 9999988764
No 102
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.44 E-value=2.6e-12 Score=147.97 Aligned_cols=227 Identities=21% Similarity=0.233 Sum_probs=145.7
Q ss_pred ccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEecccccc
Q 002386 555 SLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSL 634 (929)
Q Consensus 555 ~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~~ 634 (929)
.+.|.+..++++...+..... ...+.+++|+||||+|||++++.+++.+.... ....+++++|....+
T Consensus 31 ~l~~Re~e~~~l~~~l~~~~~-----------~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~-~~~~~v~in~~~~~~ 98 (394)
T PRK00411 31 NLPHREEQIEELAFALRPALR-----------GSRPLNVLIYGPPGTGKTTTVKKVFEELEEIA-VKVVYVYINCQIDRT 98 (394)
T ss_pred CCCCHHHHHHHHHHHHHHHhC-----------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHhc-CCcEEEEEECCcCCC
Confidence 566788888888876643322 12235699999999999999999999885432 126688899865432
Q ss_pred Cc------------------hhhHHHHHHHHHHHHHh-cCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHH
Q 002386 635 EK------------------GPIIRQALSNFISEALD-HAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMD 695 (929)
Q Consensus 635 ~~------------------~~~~~~~l~~~f~~a~~-~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld 695 (929)
.. .......+..+...... ..+.||+|||+|.+.. . .+ ...+..|.+.++
T Consensus 99 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~--~--~~-------~~~l~~l~~~~~ 167 (394)
T PRK00411 99 RYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFE--K--EG-------NDVLYSLLRAHE 167 (394)
T ss_pred HHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhc--c--CC-------chHHHHHHHhhh
Confidence 10 00122233333333222 3467999999999861 0 00 133444445444
Q ss_pred HhcccccCccCCCcEEEEEecCCCC---ccccccccCCCcc-eEeeCCCCcHHHHHHHHHHHHhhc--ccccCHHHHHHH
Q 002386 696 EYGEKRKSSCGIGPIAFVASAQSLE---KIPQSLTSSGRFD-FHVQLPAPAASERKAILEHEIQRR--SLECSDEILLDV 769 (929)
Q Consensus 696 ~~~~~~~~~~~~~~VivIattn~~~---~L~~~L~~~~Rf~-~~i~l~~Pd~~eR~~IL~~~l~~~--~~~~~d~~l~~L 769 (929)
..... ++.+|++++..+ .+++.+.+ ||. ..+.|++++.++..+|++..+... ...++++.++.+
T Consensus 168 ~~~~~--------~v~vI~i~~~~~~~~~l~~~~~s--~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i 237 (394)
T PRK00411 168 EYPGA--------RIGVIGISSDLTFLYILDPRVKS--VFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLI 237 (394)
T ss_pred ccCCC--------eEEEEEEECCcchhhhcCHHHHh--cCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHH
Confidence 33211 477888877653 45666666 553 578999999999999999887642 234778888888
Q ss_pred HhhcCCC--ChhhHHHHHHHHHHHHhhccccCCccccccccccccccccccccccccc
Q 002386 770 ASKCDGY--DAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLP 825 (929)
Q Consensus 770 A~~teG~--s~~DL~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~lt~edf~~al~~~~P 825 (929)
++.+.+. ..+..-.++.+|...|..+ +...++.+|+.+|+....+
T Consensus 238 ~~~~~~~~Gd~r~a~~ll~~a~~~a~~~-----------~~~~I~~~~v~~a~~~~~~ 284 (394)
T PRK00411 238 ADLTAREHGDARVAIDLLRRAGLIAERE-----------GSRKVTEEDVRKAYEKSEI 284 (394)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHHHHc-----------CCCCcCHHHHHHHHHHHHH
Confidence 8887442 3344456677776666544 3356888999888877643
No 103
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.44 E-value=7.1e-13 Score=153.83 Aligned_cols=179 Identities=17% Similarity=0.251 Sum_probs=123.0
Q ss_pred ceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccccccCchhhHHHHHHHHHHHHHhcCCcEEEEccccccccC
Q 002386 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISS 670 (929)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~ 670 (929)
.+++||||+|+|||+|++++|+++..... ...+.|+++.++.......+...-..-|....+..+.+|+|||++.+.+.
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~-~~~v~yi~~~~f~~~~~~~~~~~~~~~f~~~~~~~~dvLlIDDi~~l~~~ 209 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEP-DLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDVLLIDDVQFLIGK 209 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCC-CCeEEEEEHHHHHHHHHHHHhcccHHHHHHHHHhcCCEEEEechhhhcCc
Confidence 35999999999999999999998754321 15688899887654443333211112233334446889999999988631
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCCCcEEEEEecCCCCc---cccccccCCCc--ceEeeCCCCcHHH
Q 002386 671 SSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEK---IPQSLTSSGRF--DFHVQLPAPAASE 745 (929)
Q Consensus 671 ~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~VivIattn~~~~---L~~~L~~~~Rf--~~~i~l~~Pd~~e 745 (929)
......+...| +.+.... ..+++++...+.. +.+.+.+ || +..+.+.+||.+.
T Consensus 210 ---------~~~q~elf~~~----n~l~~~~-------k~iIitsd~~p~~l~~l~~rL~S--R~~~gl~v~i~~pd~e~ 267 (440)
T PRK14088 210 ---------TGVQTELFHTF----NELHDSG-------KQIVICSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEET 267 (440)
T ss_pred ---------HHHHHHHHHHH----HHHHHcC-------CeEEEECCCCHHHHHHHHHHHhh--HHhcCceEeeCCCCHHH
Confidence 11112344433 3333221 2455555555554 4567777 66 4678999999999
Q ss_pred HHHHHHHHHhhcccccCHHHHHHHHhhcCCCChhhHHHHHHHHHHHHh
Q 002386 746 RKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAAV 793 (929)
Q Consensus 746 R~~IL~~~l~~~~~~~~d~~l~~LA~~teG~s~~DL~~Lv~~A~~~a~ 793 (929)
|.+|++..+...++.++++.+..||....| +.++|+.++.+....+.
T Consensus 268 r~~IL~~~~~~~~~~l~~ev~~~Ia~~~~~-~~R~L~g~l~~l~~~~~ 314 (440)
T PRK14088 268 RKKIARKMLEIEHGELPEEVLNFVAENVDD-NLRRLRGAIIKLLVYKE 314 (440)
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHhcccc-CHHHHHHHHHHHHHHHH
Confidence 999999999888899999999999999887 77888888877654443
No 104
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.44 E-value=3.3e-12 Score=145.19 Aligned_cols=190 Identities=17% Similarity=0.249 Sum_probs=130.6
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccc-----------
Q 002386 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL----------- 620 (929)
Q Consensus 552 ~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~----------- 620 (929)
+++++.|++..++.+.+.+.. ...+..+||+||+|+||||+|+++|+.+......
T Consensus 14 ~~~~iiGq~~~~~~l~~~~~~--------------~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c 79 (363)
T PRK14961 14 YFRDIIGQKHIVTAISNGLSL--------------GRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIIC 79 (363)
T ss_pred chhhccChHHHHHHHHHHHHc--------------CCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHH
Confidence 356788898888877664421 1223458999999999999999999998632110
Q ss_pred -------eeeEEEEeccccccCchhhHHHHHHHHHHHHH----hcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHH
Q 002386 621 -------VAHIVFVCCSRLSLEKGPIIRQALSNFISEAL----DHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKF 689 (929)
Q Consensus 621 -------~~~~~~V~~s~L~~~~~~~~~~~l~~~f~~a~----~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~ 689 (929)
...+..++... ......+ +++++.+. .....|+||||+|.+.. ...+.
T Consensus 80 ~~~~~~~~~d~~~~~~~~--~~~v~~i----r~i~~~~~~~p~~~~~kviIIDEa~~l~~---------------~a~na 138 (363)
T PRK14961 80 KEIEKGLCLDLIEIDAAS--RTKVEEM----REILDNIYYSPSKSRFKVYLIDEVHMLSR---------------HSFNA 138 (363)
T ss_pred HHHhcCCCCceEEecccc--cCCHHHH----HHHHHHHhcCcccCCceEEEEEChhhcCH---------------HHHHH
Confidence 01223333221 1223333 33333332 22345999999998741 23345
Q ss_pred HHHHHHHhcccccCccCCCcEEEEEecCCCCccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhhcccccCHHHHHHH
Q 002386 690 LVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDV 769 (929)
Q Consensus 690 L~~~ld~~~~~~~~~~~~~~VivIattn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~d~~l~~L 769 (929)
|+..+++... .+.+|.+++..+.+.+.+++ |+. .++|++|+.++..++++..++..+..++++.+..+
T Consensus 139 LLk~lEe~~~---------~~~fIl~t~~~~~l~~tI~S--Rc~-~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~i 206 (363)
T PRK14961 139 LLKTLEEPPQ---------HIKFILATTDVEKIPKTILS--RCL-QFKLKIISEEKIFNFLKYILIKESIDTDEYALKLI 206 (363)
T ss_pred HHHHHhcCCC---------CeEEEEEcCChHhhhHHHHh--hce-EEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 6666665332 36667777777889888888 774 78999999999999999999888888999999999
Q ss_pred HhhcCCCChhhHHHHHHHHH
Q 002386 770 ASKCDGYDAYDLEILVDRTV 789 (929)
Q Consensus 770 A~~teG~s~~DL~~Lv~~A~ 789 (929)
+..+.| +++++..+++.+.
T Consensus 207 a~~s~G-~~R~al~~l~~~~ 225 (363)
T PRK14961 207 AYHAHG-SMRDALNLLEHAI 225 (363)
T ss_pred HHHcCC-CHHHHHHHHHHHH
Confidence 998877 6777777777764
No 105
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.43 E-value=2.5e-12 Score=137.45 Aligned_cols=168 Identities=17% Similarity=0.227 Sum_probs=115.2
Q ss_pred ceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccccccCchhhHHHHHHHHHHHHHhcCCcEEEEccccccccC
Q 002386 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISS 670 (929)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~ 670 (929)
.+++||||+|||||+|++++|+++.... ..+.|++....... . .+.++... ...+|+|||++.+.+
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~---~~v~y~~~~~~~~~-~-------~~~~~~~~--~~dlliiDdi~~~~~- 111 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAELSQRG---RAVGYVPLDKRAWF-V-------PEVLEGME--QLSLVCIDNIECIAG- 111 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCC---CeEEEEEHHHHhhh-h-------HHHHHHhh--hCCEEEEeChhhhcC-
Confidence 5799999999999999999999876432 34556666543211 1 11111111 135999999998852
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCCCcEEEEEecCCCCc---cccccccCCCcc--eEeeCCCCcHHH
Q 002386 671 SSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEK---IPQSLTSSGRFD--FHVQLPAPAASE 745 (929)
Q Consensus 671 ~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~VivIattn~~~~---L~~~L~~~~Rf~--~~i~l~~Pd~~e 745 (929)
.......+.+.+...++. .. .-+++++++.+.. +.+.|++ |+. .++.+.+|+.++
T Consensus 112 --------~~~~~~~lf~l~n~~~e~----g~------~~li~ts~~~p~~l~~~~~~L~S--Rl~~g~~~~l~~~~~~~ 171 (235)
T PRK08084 112 --------DELWEMAIFDLYNRILES----GR------TRLLITGDRPPRQLNLGLPDLAS--RLDWGQIYKLQPLSDEE 171 (235)
T ss_pred --------CHHHHHHHHHHHHHHHHc----CC------CeEEEeCCCChHHcCcccHHHHH--HHhCCceeeecCCCHHH
Confidence 111223455555554432 10 1344555556555 5788999 774 789999999999
Q ss_pred HHHHHHHHHhhcccccCHHHHHHHHhhcCCCChhhHHHHHHHHHHHHh
Q 002386 746 RKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAAV 793 (929)
Q Consensus 746 R~~IL~~~l~~~~~~~~d~~l~~LA~~teG~s~~DL~~Lv~~A~~~a~ 793 (929)
|.+++++.+..+++.++++.++.|+...+| +.+.+..++++..+.++
T Consensus 172 ~~~~l~~~a~~~~~~l~~~v~~~L~~~~~~-d~r~l~~~l~~l~~~~l 218 (235)
T PRK08084 172 KLQALQLRARLRGFELPEDVGRFLLKRLDR-EMRTLFMTLDQLDRASI 218 (235)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHhhcC-CHHHHHHHHHHHHHHHH
Confidence 999999988888899999999999999888 67778887777644443
No 106
>PLN03025 replication factor C subunit; Provisional
Probab=99.43 E-value=3e-12 Score=143.24 Aligned_cols=189 Identities=20% Similarity=0.223 Sum_probs=126.9
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccc
Q 002386 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSR 631 (929)
Q Consensus 552 ~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~ 631 (929)
++.++.|.+..++.+.+.+. . ....++||+||||||||++|+++|+++.... ....+..++.++
T Consensus 11 ~l~~~~g~~~~~~~L~~~~~---~------------~~~~~lll~Gp~G~GKTtla~~la~~l~~~~-~~~~~~eln~sd 74 (319)
T PLN03025 11 KLDDIVGNEDAVSRLQVIAR---D------------GNMPNLILSGPPGTGKTTSILALAHELLGPN-YKEAVLELNASD 74 (319)
T ss_pred CHHHhcCcHHHHHHHHHHHh---c------------CCCceEEEECCCCCCHHHHHHHHHHHHhccc-Cccceeeecccc
Confidence 35667777776666554221 1 1123699999999999999999999984221 113355566654
Q ss_pred cccCchhhHHHHHHHHHHHHH---hcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCCC
Q 002386 632 LSLEKGPIIRQALSNFISEAL---DHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIG 708 (929)
Q Consensus 632 L~~~~~~~~~~~l~~~f~~a~---~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~ 708 (929)
..+ .+.++..++....... .....+++|||+|.+.. .-.+.|.+.++.+..
T Consensus 75 ~~~--~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~---------------~aq~aL~~~lE~~~~--------- 128 (319)
T PLN03025 75 DRG--IDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTS---------------GAQQALRRTMEIYSN--------- 128 (319)
T ss_pred ccc--HHHHHHHHHHHHhccccCCCCCeEEEEEechhhcCH---------------HHHHHHHHHHhcccC---------
Confidence 432 2334444433221110 12357999999999852 223556666665432
Q ss_pred cEEEEEecCCCCccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhhcccccCHHHHHHHHhhcCCCChhhHHHHHH
Q 002386 709 PIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVD 786 (929)
Q Consensus 709 ~VivIattn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~d~~l~~LA~~teG~s~~DL~~Lv~ 786 (929)
...+|.++|....+.+++++ |+. .++|++|+.++..+.++..+++.++.++++.+..++..+.| +.+.+.+.++
T Consensus 129 ~t~~il~~n~~~~i~~~L~S--Rc~-~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~g-DlR~aln~Lq 202 (319)
T PLN03025 129 TTRFALACNTSSKIIEPIQS--RCA-IVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADG-DMRQALNNLQ 202 (319)
T ss_pred CceEEEEeCCccccchhHHH--hhh-cccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHH
Confidence 24566777888888889998 764 78999999999999999999988999999999999998776 4444444444
No 107
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.42 E-value=2.8e-12 Score=152.55 Aligned_cols=195 Identities=17% Similarity=0.205 Sum_probs=135.2
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCcc------------
Q 002386 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKD------------ 619 (929)
Q Consensus 552 ~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~------------ 619 (929)
+|++++|++..++.+.+.+.. ...+..+||+||+|+||||+|+++|+.+.....
T Consensus 14 ~f~dviGQe~vv~~L~~~l~~--------------~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg 79 (618)
T PRK14951 14 SFSEMVGQEHVVQALTNALTQ--------------QRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCG 79 (618)
T ss_pred CHHHhcCcHHHHHHHHHHHHc--------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCC
Confidence 466888888888777764421 122345899999999999999999999874210
Q ss_pred -----------ceeeEEEEeccccccCchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHH
Q 002386 620 -----------LVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTK 688 (929)
Q Consensus 620 -----------~~~~~~~V~~s~L~~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~ 688 (929)
....++.++... ...++.++..+..+-.........|+||||+|.+.. .-.+
T Consensus 80 ~C~~C~~i~~g~h~D~~eldaas--~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~---------------~a~N 142 (618)
T PRK14951 80 VCQACRDIDSGRFVDYTELDAAS--NRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTN---------------TAFN 142 (618)
T ss_pred ccHHHHHHHcCCCCceeecCccc--ccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCH---------------HHHH
Confidence 001233333322 223445554443322222223346999999999852 3345
Q ss_pred HHHHHHHHhcccccCccCCCcEEEEEecCCCCccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhhcccccCHHHHHH
Q 002386 689 FLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLD 768 (929)
Q Consensus 689 ~L~~~ld~~~~~~~~~~~~~~VivIattn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~d~~l~~ 768 (929)
.|+..+++... .+.||.+|+.+..+.+.+++ |+. .++|.+++.++..+.++..+.+.++.++++.+..
T Consensus 143 aLLKtLEEPP~---------~~~fIL~Ttd~~kil~TIlS--Rc~-~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~ 210 (618)
T PRK14951 143 AMLKTLEEPPE---------YLKFVLATTDPQKVPVTVLS--RCL-QFNLRPMAPETVLEHLTQVLAAENVPAEPQALRL 210 (618)
T ss_pred HHHHhcccCCC---------CeEEEEEECCchhhhHHHHH--hce-eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 56666665332 36677777778888888888 764 8899999999999999999988899999999999
Q ss_pred HHhhcCCCChhhHHHHHHHHHH
Q 002386 769 VASKCDGYDAYDLEILVDRTVH 790 (929)
Q Consensus 769 LA~~teG~s~~DL~~Lv~~A~~ 790 (929)
|+..+.| +.+++..+++++..
T Consensus 211 La~~s~G-slR~al~lLdq~ia 231 (618)
T PRK14951 211 LARAARG-SMRDALSLTDQAIA 231 (618)
T ss_pred HHHHcCC-CHHHHHHHHHHHHH
Confidence 9998887 77788777776653
No 108
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.42 E-value=1.5e-12 Score=153.15 Aligned_cols=177 Identities=18% Similarity=0.235 Sum_probs=122.9
Q ss_pred eEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccccccCchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCC
Q 002386 592 HILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSS 671 (929)
Q Consensus 592 ~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~~ 671 (929)
.++|||++|+|||+|++++|+++.... ....+.|+++.++.......+.....+.|.+. ...+++|+|||++.+.+.
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~~~~-~g~~V~Yitaeef~~el~~al~~~~~~~f~~~-y~~~DLLlIDDIq~l~gk- 392 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYARRLY-PGTRVRYVSSEEFTNEFINSIRDGKGDSFRRR-YREMDILLVDDIQFLEDK- 392 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhC-CCCeEEEeeHHHHHHHHHHHHHhccHHHHHHH-hhcCCEEEEehhccccCC-
Confidence 499999999999999999999985321 11568899998876554444333222233332 245789999999988631
Q ss_pred CCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCCCcEEEEEecCCCC---ccccccccCCCc--ceEeeCCCCcHHHH
Q 002386 672 SDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLE---KIPQSLTSSGRF--DFHVQLPAPAASER 746 (929)
Q Consensus 672 ~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~VivIattn~~~---~L~~~L~~~~Rf--~~~i~l~~Pd~~eR 746 (929)
......+++ +++.+.... .-+||++...+. .+++.|.+ || ...+++.+||.+.|
T Consensus 393 --------e~tqeeLF~----l~N~l~e~g-------k~IIITSd~~P~eL~~l~~rL~S--Rf~~GLvv~I~~PD~EtR 451 (617)
T PRK14086 393 --------ESTQEEFFH----TFNTLHNAN-------KQIVLSSDRPPKQLVTLEDRLRN--RFEWGLITDVQPPELETR 451 (617)
T ss_pred --------HHHHHHHHH----HHHHHHhcC-------CCEEEecCCChHhhhhccHHHHh--hhhcCceEEcCCCCHHHH
Confidence 111223444 344333221 123444433333 46788998 66 57889999999999
Q ss_pred HHHHHHHHhhcccccCHHHHHHHHhhcCCCChhhHHHHHHHHHHHHh
Q 002386 747 KAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAAV 793 (929)
Q Consensus 747 ~~IL~~~l~~~~~~~~d~~l~~LA~~teG~s~~DL~~Lv~~A~~~a~ 793 (929)
.+||+..+..+++.+++++++.|+....+ +.++|+.++.+....+.
T Consensus 452 ~aIL~kka~~r~l~l~~eVi~yLa~r~~r-nvR~LegaL~rL~a~a~ 497 (617)
T PRK14086 452 IAILRKKAVQEQLNAPPEVLEFIASRISR-NIRELEGALIRVTAFAS 497 (617)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998876 67788888887654443
No 109
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.42 E-value=3.8e-12 Score=151.63 Aligned_cols=194 Identities=19% Similarity=0.247 Sum_probs=135.2
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCcc------------
Q 002386 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKD------------ 619 (929)
Q Consensus 552 ~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~------------ 619 (929)
+|+++.|++...+.+.+.+.. ...+..+||+||+|||||++|+.+|+.+.....
T Consensus 14 ~f~~viGq~~v~~~L~~~i~~--------------~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C 79 (559)
T PRK05563 14 TFEDVVGQEHITKTLKNAIKQ--------------GKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEIC 79 (559)
T ss_pred cHHhccCcHHHHHHHHHHHHc--------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHH
Confidence 466888999888887775432 122356899999999999999999999864321
Q ss_pred ------ceeeEEEEeccccccCchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHH
Q 002386 620 ------LVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDI 693 (929)
Q Consensus 620 ------~~~~~~~V~~s~L~~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ 693 (929)
....++.++.+. +..+..++..+..+..........|+||||+|.+.. .-.+.|+..
T Consensus 80 ~~i~~g~~~dv~eidaas--~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~---------------~a~naLLKt 142 (559)
T PRK05563 80 KAITNGSLMDVIEIDAAS--NNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLST---------------GAFNALLKT 142 (559)
T ss_pred HHHhcCCCCCeEEeeccc--cCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCH---------------HHHHHHHHH
Confidence 112344444432 223444444333322222233456999999998841 334556666
Q ss_pred HHHhcccccCccCCCcEEEEEecCCCCccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhhcccccCHHHHHHHHhhc
Q 002386 694 MDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKC 773 (929)
Q Consensus 694 ld~~~~~~~~~~~~~~VivIattn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~d~~l~~LA~~t 773 (929)
+++... .+++|.+|+.++.+++.+++ |+. .+.|.+|+.++..+.++..+++.++.++++.+..++..+
T Consensus 143 LEepp~---------~~ifIlatt~~~ki~~tI~S--Rc~-~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s 210 (559)
T PRK05563 143 LEEPPA---------HVIFILATTEPHKIPATILS--RCQ-RFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAA 210 (559)
T ss_pred hcCCCC---------CeEEEEEeCChhhCcHHHHh--Hhe-EEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 665322 36666667778899999988 776 688999999999999999998889899999999999988
Q ss_pred CCCChhhHHHHHHHHH
Q 002386 774 DGYDAYDLEILVDRTV 789 (929)
Q Consensus 774 eG~s~~DL~~Lv~~A~ 789 (929)
.| +.++...+++.+.
T Consensus 211 ~G-~~R~al~~Ldq~~ 225 (559)
T PRK05563 211 EG-GMRDALSILDQAI 225 (559)
T ss_pred CC-CHHHHHHHHHHHH
Confidence 77 7777776666553
No 110
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.41 E-value=2.3e-12 Score=158.35 Aligned_cols=211 Identities=18% Similarity=0.255 Sum_probs=138.1
Q ss_pred ccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEecccccc
Q 002386 555 SLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSL 634 (929)
Q Consensus 555 ~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~~ 634 (929)
+..|++.+++.|++.+...... +-..+..++|+||||+|||++++.+|+.++ ..+..+++.....
T Consensus 323 ~~~g~~~vK~~i~~~l~~~~~~---------~~~~g~~i~l~GppG~GKTtl~~~ia~~l~------~~~~~i~~~~~~d 387 (784)
T PRK10787 323 DHYGLERVKDRILEYLAVQSRV---------NKIKGPILCLVGPPGVGKTSLGQSIAKATG------RKYVRMALGGVRD 387 (784)
T ss_pred hccCHHHHHHHHHHHHHHHHhc---------ccCCCceEEEECCCCCCHHHHHHHHHHHhC------CCEEEEEcCCCCC
Confidence 3677888888888876533221 112234699999999999999999999987 5566666544321
Q ss_pred ---------CchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccc-----
Q 002386 635 ---------EKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEK----- 700 (929)
Q Consensus 635 ---------~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~----- 700 (929)
.+.+.....+...+..+... ..|++|||+|.+.+ +..+ .....|+..+|.-...
T Consensus 388 ~~~i~g~~~~~~g~~~G~~~~~l~~~~~~-~~villDEidk~~~---~~~g--------~~~~aLlevld~~~~~~~~d~ 455 (784)
T PRK10787 388 EAEIRGHRRTYIGSMPGKLIQKMAKVGVK-NPLFLLDEIDKMSS---DMRG--------DPASALLEVLDPEQNVAFSDH 455 (784)
T ss_pred HHHhccchhccCCCCCcHHHHHHHhcCCC-CCEEEEEChhhccc---ccCC--------CHHHHHHHHhccccEEEEecc
Confidence 12222222333334444323 34899999999863 1111 1234555555531100
Q ss_pred -ccCccCCCcEEEEEecCCCCccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhh----------cccccCHHHHHHH
Q 002386 701 -RKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQR----------RSLECSDEILLDV 769 (929)
Q Consensus 701 -~~~~~~~~~VivIattn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~----------~~~~~~d~~l~~L 769 (929)
-.-....+++++|+|+|.. .++++|++ ||. .|.+.+++.++..+|.+.++.. ..+.++++.+..+
T Consensus 456 ~~~~~~dls~v~~i~TaN~~-~i~~aLl~--R~~-ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~i 531 (784)
T PRK10787 456 YLEVDYDLSDVMFVATSNSM-NIPAPLLD--RME-VIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGI 531 (784)
T ss_pred cccccccCCceEEEEcCCCC-CCCHHHhc--cee-eeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHH
Confidence 0001233579999999987 59999999 996 8999999999999999988742 1245788888888
Q ss_pred Hhh-cCCCChhhHHHHHHHHHHHHhhcc
Q 002386 770 ASK-CDGYDAYDLEILVDRTVHAAVGRY 796 (929)
Q Consensus 770 A~~-teG~s~~DL~~Lv~~A~~~a~~r~ 796 (929)
+.. +..+.+|.|+..+++.+...+.+.
T Consensus 532 i~~yt~e~GaR~LeR~I~~i~r~~l~~~ 559 (784)
T PRK10787 532 IRYYTREAGVRSLEREISKLCRKAVKQL 559 (784)
T ss_pred HHhCCcccCCcHHHHHHHHHHHHHHHHH
Confidence 753 345667888888888777666654
No 111
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.41 E-value=3.4e-12 Score=135.43 Aligned_cols=168 Identities=20% Similarity=0.329 Sum_probs=114.3
Q ss_pred CceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccccccCchhhHHHHHHHHHHHHHhcCCcEEEEcccccccc
Q 002386 590 PGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIIS 669 (929)
Q Consensus 590 ~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~ 669 (929)
+.+++|+||+|||||++|+++++++.... ..+++++|..+.... .+++... ..+.+|+|||+|.+..
T Consensus 38 ~~~lll~G~~G~GKT~la~~~~~~~~~~~---~~~~~i~~~~~~~~~--------~~~~~~~--~~~~lLvIDdi~~l~~ 104 (226)
T TIGR03420 38 DRFLYLWGESGSGKSHLLQAACAAAEERG---KSAIYLPLAELAQAD--------PEVLEGL--EQADLVCLDDVEAIAG 104 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhcC---CcEEEEeHHHHHHhH--------HHHHhhc--ccCCEEEEeChhhhcC
Confidence 46799999999999999999999875332 567889998775322 1222222 2346999999998742
Q ss_pred CCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCCCcEEEEEecCCCCccc---cccccCCCc--ceEeeCCCCcHH
Q 002386 670 SSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIP---QSLTSSGRF--DFHVQLPAPAAS 744 (929)
Q Consensus 670 ~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~VivIattn~~~~L~---~~L~~~~Rf--~~~i~l~~Pd~~ 744 (929)
. .. ....|...++...... ..++++++..+..++ +.|.+ || ...+.+++|+.+
T Consensus 105 ---~------~~----~~~~L~~~l~~~~~~~-------~~iIits~~~~~~~~~~~~~L~~--r~~~~~~i~l~~l~~~ 162 (226)
T TIGR03420 105 ---Q------PE----WQEALFHLYNRVREAG-------GRLLIAGRAAPAQLPLRLPDLRT--RLAWGLVFQLPPLSDE 162 (226)
T ss_pred ---C------hH----HHHHHHHHHHHHHHcC-------CeEEEECCCChHHCCcccHHHHH--HHhcCeeEecCCCCHH
Confidence 0 00 1123333333322211 133444433443332 56666 55 478999999999
Q ss_pred HHHHHHHHHHhhcccccCHHHHHHHHhhcCCCChhhHHHHHHHHHHHHh
Q 002386 745 ERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAAV 793 (929)
Q Consensus 745 eR~~IL~~~l~~~~~~~~d~~l~~LA~~teG~s~~DL~~Lv~~A~~~a~ 793 (929)
++..+++.++.+.++.++++.+..|+.. .+.+.+++..+++++...+.
T Consensus 163 e~~~~l~~~~~~~~~~~~~~~l~~L~~~-~~gn~r~L~~~l~~~~~~~~ 210 (226)
T TIGR03420 163 EKIAALQSRAARRGLQLPDEVADYLLRH-GSRDMGSLMALLDALDRASL 210 (226)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHh-ccCCHHHHHHHHHHHHHHHH
Confidence 9999999988878888999999999996 55589999999888764443
No 112
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=1.5e-13 Score=153.07 Aligned_cols=83 Identities=36% Similarity=0.614 Sum_probs=68.1
Q ss_pred CCCchhh-HHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHcCCc-eEEEecccccccccChhh
Q 002386 846 VGGLTDI-QNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLR-FISVKGPELLNKYIGASE 923 (929)
Q Consensus 846 IgGL~~v-k~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~gln-fIsVkg~ELl~kyIG~SE 923 (929)
||||+.- -..++.....-.--|+...+.|+..-+|||||||||||||++||-+++.++.+ --.|+|||+|+||||+||
T Consensus 223 IGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL~KYVGeSE 302 (744)
T KOG0741|consen 223 IGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEILNKYVGESE 302 (744)
T ss_pred cccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHHHHHhhcccH
Confidence 7888643 34445554433344777888999999999999999999999999999999654 566899999999999999
Q ss_pred HHHhh
Q 002386 924 QAVRR 928 (929)
Q Consensus 924 q~VRd 928 (929)
.|||+
T Consensus 303 ~NvR~ 307 (744)
T KOG0741|consen 303 ENVRK 307 (744)
T ss_pred HHHHH
Confidence 99996
No 113
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.41 E-value=8.4e-12 Score=146.48 Aligned_cols=194 Identities=19% Similarity=0.249 Sum_probs=132.2
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCcc------------
Q 002386 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKD------------ 619 (929)
Q Consensus 552 ~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~------------ 619 (929)
+++++.|++.+++.+...+.. ...+..+||+|||||||||+|+++|+.+.....
T Consensus 12 ~~~dvvGq~~v~~~L~~~i~~--------------~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~ 77 (504)
T PRK14963 12 TFDEVVGQEHVKEVLLAALRQ--------------GRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCL 77 (504)
T ss_pred CHHHhcChHHHHHHHHHHHHc--------------CCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhH
Confidence 356788888887777664421 112344699999999999999999999864211
Q ss_pred -----ceeeEEEEeccccccCchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHH
Q 002386 620 -----LVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIM 694 (929)
Q Consensus 620 -----~~~~~~~V~~s~L~~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~l 694 (929)
....+..++... ......++.....+-.......+.|+||||+|.+. ....+.|+..+
T Consensus 78 ~i~~~~h~dv~el~~~~--~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls---------------~~a~naLLk~L 140 (504)
T PRK14963 78 AVRRGAHPDVLEIDAAS--NNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMS---------------KSAFNALLKTL 140 (504)
T ss_pred HHhcCCCCceEEecccc--cCCHHHHHHHHHHHhhccccCCCeEEEEECccccC---------------HHHHHHHHHHH
Confidence 112345555432 22234444432222111222456799999998763 13345566666
Q ss_pred HHhcccccCccCCCcEEEEEecCCCCccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhhcccccCHHHHHHHHhhcC
Q 002386 695 DEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCD 774 (929)
Q Consensus 695 d~~~~~~~~~~~~~~VivIattn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~d~~l~~LA~~te 774 (929)
+.... .+++|.+++.+..+.+.+.+ |+. .++|.+|+.++..+.++..+++.++.++++.+..++..+.
T Consensus 141 Eep~~---------~t~~Il~t~~~~kl~~~I~S--Rc~-~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~ 208 (504)
T PRK14963 141 EEPPE---------HVIFILATTEPEKMPPTILS--RTQ-HFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLAD 208 (504)
T ss_pred HhCCC---------CEEEEEEcCChhhCChHHhc--ceE-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 65322 36677777888889999988 766 7899999999999999999998899999999999999888
Q ss_pred CCChhhHHHHHHHHH
Q 002386 775 GYDAYDLEILVDRTV 789 (929)
Q Consensus 775 G~s~~DL~~Lv~~A~ 789 (929)
| +.+++.++++++.
T Consensus 209 G-dlR~aln~Lekl~ 222 (504)
T PRK14963 209 G-AMRDAESLLERLL 222 (504)
T ss_pred C-CHHHHHHHHHHHH
Confidence 7 5556666666543
No 114
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.40 E-value=2e-13 Score=140.58 Aligned_cols=85 Identities=29% Similarity=0.481 Sum_probs=75.1
Q ss_pred CCccCCCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHcCCceEEEeccccccccc
Q 002386 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYI 919 (929)
Q Consensus 840 ~~~w~dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~glnfIsVkg~ELl~kyI 919 (929)
+..++|+.|.+++|+..+-+++ .++.|+.|..+ .|+++|||||||||||++|+|+|.+.+.+|+.||.++|+++||
T Consensus 117 ~it~ddViGqEeAK~kcrli~~-yLenPe~Fg~W---APknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGehV 192 (368)
T COG1223 117 DITLDDVIGQEEAKRKCRLIME-YLENPERFGDW---APKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHV 192 (368)
T ss_pred cccHhhhhchHHHHHHHHHHHH-HhhChHHhccc---CcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHHh
Confidence 5789999999999987665554 35677887775 4689999999999999999999999999999999999999999
Q ss_pred ChhhHHHhh
Q 002386 920 GASEQAVRR 928 (929)
Q Consensus 920 G~SEq~VRd 928 (929)
|...+.||+
T Consensus 193 Gdgar~Ihe 201 (368)
T COG1223 193 GDGARRIHE 201 (368)
T ss_pred hhHHHHHHH
Confidence 999999885
No 115
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.39 E-value=7.8e-12 Score=144.68 Aligned_cols=160 Identities=20% Similarity=0.304 Sum_probs=112.0
Q ss_pred ceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccccccCchhhHHHHHHHHHHHHHhcCCcEEEEccccccccC
Q 002386 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISS 670 (929)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~ 670 (929)
.+++|+||||||||++|+++|+.++ ..+..+++... ....++..+.............+|||||+|.+..
T Consensus 37 ~~ilL~GppGtGKTtLA~~ia~~~~------~~~~~l~a~~~---~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~- 106 (413)
T PRK13342 37 SSMILWGPPGTGKTTLARIIAGATD------APFEALSAVTS---GVKDLREVIEEARQRRSAGRRTILFIDEIHRFNK- 106 (413)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC------CCEEEEecccc---cHHHHHHHHHHHHHhhhcCCceEEEEechhhhCH-
Confidence 4799999999999999999999886 56777776532 2333444443333322234678999999998742
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCCCcEEEEEec--CCCCccccccccCCCcceEeeCCCCcHHHHHH
Q 002386 671 SSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASA--QSLEKIPQSLTSSGRFDFHVQLPAPAASERKA 748 (929)
Q Consensus 671 ~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~VivIatt--n~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~ 748 (929)
...+.|+..++.. .+++|+++ |....+++++++ |+ ..+.|++++.++..+
T Consensus 107 --------------~~q~~LL~~le~~-----------~iilI~att~n~~~~l~~aL~S--R~-~~~~~~~ls~e~i~~ 158 (413)
T PRK13342 107 --------------AQQDALLPHVEDG-----------TITLIGATTENPSFEVNPALLS--RA-QVFELKPLSEEDIEQ 158 (413)
T ss_pred --------------HHHHHHHHHhhcC-----------cEEEEEeCCCChhhhccHHHhc--cc-eeeEeCCCCHHHHHH
Confidence 2234455555431 25666554 334578899999 87 488999999999999
Q ss_pred HHHHHHhhc--cc-ccCHHHHHHHHhhcCCCChhhHHHHHHHHH
Q 002386 749 ILEHEIQRR--SL-ECSDEILLDVASKCDGYDAYDLEILVDRTV 789 (929)
Q Consensus 749 IL~~~l~~~--~~-~~~d~~l~~LA~~teG~s~~DL~~Lv~~A~ 789 (929)
+++..+... ++ .++++.+..++..+.| .++.+.++++.+.
T Consensus 159 lL~~~l~~~~~~~i~i~~~al~~l~~~s~G-d~R~aln~Le~~~ 201 (413)
T PRK13342 159 LLKRALEDKERGLVELDDEALDALARLANG-DARRALNLLELAA 201 (413)
T ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 999887642 44 6888889999998855 5666666666653
No 116
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=1.9e-13 Score=165.57 Aligned_cols=89 Identities=40% Similarity=0.733 Sum_probs=84.4
Q ss_pred CCccCCCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHc-----CCceEEEecccc
Q 002386 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC-----SLRFISVKGPEL 914 (929)
Q Consensus 840 ~~~w~dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~-----glnfIsVkg~EL 914 (929)
.++|+++|||+.+++.|+|++..|+.||+.|.+..+.++.|+||+||||||||+.|+|+|..| ..-|+-=||++.
T Consensus 261 ~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD~ 340 (1080)
T KOG0732|consen 261 SVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGADC 340 (1080)
T ss_pred ccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCchh
Confidence 589999999999999999999999999999999999999999999999999999999999999 345777899999
Q ss_pred cccccChhhHHHhh
Q 002386 915 LNKYIGASEQAVRR 928 (929)
Q Consensus 915 l~kyIG~SEq~VRd 928 (929)
++||||+.|+.+|.
T Consensus 341 lskwvgEaERqlrl 354 (1080)
T KOG0732|consen 341 LSKWVGEAERQLRL 354 (1080)
T ss_pred hccccCcHHHHHHH
Confidence 99999999999984
No 117
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.39 E-value=1e-11 Score=146.04 Aligned_cols=194 Identities=16% Similarity=0.246 Sum_probs=133.5
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccc-----------
Q 002386 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL----------- 620 (929)
Q Consensus 552 ~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~----------- 620 (929)
+|+++.|++..++.+...+.. ...+..+||+||+|+|||++|+.+|+.+......
T Consensus 14 ~f~diiGq~~~v~~L~~~i~~--------------~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC 79 (546)
T PRK14957 14 SFAEVAGQQHALNSLVHALET--------------QKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENC 79 (546)
T ss_pred cHHHhcCcHHHHHHHHHHHHc--------------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHH
Confidence 356788999888877764421 1223458999999999999999999998642110
Q ss_pred -------eeeEEEEeccccccCchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHH
Q 002386 621 -------VAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDI 693 (929)
Q Consensus 621 -------~~~~~~V~~s~L~~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ 693 (929)
...++.++... .....+++..+..+-.........|+||||+|.+.. ...+.|+..
T Consensus 80 ~~i~~~~~~dlieidaas--~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~---------------~a~naLLK~ 142 (546)
T PRK14957 80 VAINNNSFIDLIEIDAAS--RTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSK---------------QSFNALLKT 142 (546)
T ss_pred HHHhcCCCCceEEeeccc--ccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhccH---------------HHHHHHHHH
Confidence 11333343322 122344444443332222334456999999998741 345677777
Q ss_pred HHHhcccccCccCCCcEEEEEecCCCCccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhhcccccCHHHHHHHHhhc
Q 002386 694 MDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKC 773 (929)
Q Consensus 694 ld~~~~~~~~~~~~~~VivIattn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~d~~l~~LA~~t 773 (929)
+++... .+.+|++|+....+.+.+++ |+. .++|.+++.++..+.++..+.+.++.+++..+..++..+
T Consensus 143 LEepp~---------~v~fIL~Ttd~~kil~tI~S--Rc~-~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s 210 (546)
T PRK14957 143 LEEPPE---------YVKFILATTDYHKIPVTILS--RCI-QLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHA 210 (546)
T ss_pred HhcCCC---------CceEEEEECChhhhhhhHHH--hee-eEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 776432 35666666677888888888 764 889999999999999999888888889999999999988
Q ss_pred CCCChhhHHHHHHHHH
Q 002386 774 DGYDAYDLEILVDRTV 789 (929)
Q Consensus 774 eG~s~~DL~~Lv~~A~ 789 (929)
.| +.+++..+++.++
T Consensus 211 ~G-dlR~alnlLek~i 225 (546)
T PRK14957 211 KG-SLRDALSLLDQAI 225 (546)
T ss_pred CC-CHHHHHHHHHHHH
Confidence 66 6666666666544
No 118
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.39 E-value=1.1e-11 Score=147.12 Aligned_cols=194 Identities=18% Similarity=0.192 Sum_probs=136.7
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCcc------------
Q 002386 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKD------------ 619 (929)
Q Consensus 552 ~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~------------ 619 (929)
+|+++.|++..++.+...+.. ...+..+||+||+||||||+|+++|+.+.....
T Consensus 11 ~f~eivGq~~i~~~L~~~i~~--------------~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C 76 (584)
T PRK14952 11 TFAEVVGQEHVTEPLSSALDA--------------GRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESC 76 (584)
T ss_pred cHHHhcCcHHHHHHHHHHHHc--------------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHH
Confidence 466888888888877765421 122344899999999999999999999874211
Q ss_pred --------ceeeEEEEeccccccCchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHH
Q 002386 620 --------LVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLV 691 (929)
Q Consensus 620 --------~~~~~~~V~~s~L~~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~ 691 (929)
....++.++.+.. ..++.++.....+..........|+||||+|.+.. .-.+.|+
T Consensus 77 ~~i~~~~~~~~dvieidaas~--~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~---------------~A~NALL 139 (584)
T PRK14952 77 VALAPNGPGSIDVVELDAASH--GGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTT---------------AGFNALL 139 (584)
T ss_pred HHhhcccCCCceEEEeccccc--cCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCH---------------HHHHHHH
Confidence 1123445554322 23556665554444333334456999999999852 3455677
Q ss_pred HHHHHhcccccCccCCCcEEEEEecCCCCccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhhcccccCHHHHHHHHh
Q 002386 692 DIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVAS 771 (929)
Q Consensus 692 ~~ld~~~~~~~~~~~~~~VivIattn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~d~~l~~LA~ 771 (929)
..|++... .++||.+|+.++.+.+.+++ |. .+++|.+++.++..+.++..++..+..++++.+..++.
T Consensus 140 K~LEEpp~---------~~~fIL~tte~~kll~TI~S--Rc-~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~ 207 (584)
T PRK14952 140 KIVEEPPE---------HLIFIFATTEPEKVLPTIRS--RT-HHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIR 207 (584)
T ss_pred HHHhcCCC---------CeEEEEEeCChHhhHHHHHH--hc-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 77776432 36777777778899999998 74 48899999999999999999988888899998888888
Q ss_pred hcCCCChhhHHHHHHHHH
Q 002386 772 KCDGYDAYDLEILVDRTV 789 (929)
Q Consensus 772 ~teG~s~~DL~~Lv~~A~ 789 (929)
...| +.+++.++++.++
T Consensus 208 ~s~G-dlR~aln~Ldql~ 224 (584)
T PRK14952 208 AGGG-SPRDTLSVLDQLL 224 (584)
T ss_pred HcCC-CHHHHHHHHHHHH
Confidence 7665 6666666666543
No 119
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.39 E-value=1.7e-11 Score=140.34 Aligned_cols=232 Identities=19% Similarity=0.160 Sum_probs=141.3
Q ss_pred cccchhHHHHHHHHHHH-hcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEecccccc
Q 002386 556 LSWMGTTASDVINRIKV-LLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSL 634 (929)
Q Consensus 556 l~g~~~~~~~i~~~l~~-ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~~ 634 (929)
+.|++.+++.+...+.. ................+.+++||+||||||||++|+++|+.++ .+++.++|..+..
T Consensus 73 ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~------~pf~~id~~~l~~ 146 (412)
T PRK05342 73 VIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILD------VPFAIADATTLTE 146 (412)
T ss_pred eeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhC------CCceecchhhccc
Confidence 67788887777544321 1111000000000112346799999999999999999999987 7888889887653
Q ss_pred -Cchhh-HHHHHHHHHHHH----HhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcc----cccCc
Q 002386 635 -EKGPI-IRQALSNFISEA----LDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGE----KRKSS 704 (929)
Q Consensus 635 -~~~~~-~~~~l~~~f~~a----~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~----~~~~~ 704 (929)
.+.+. ....+..++..+ ....++||||||+|.+...+...... .......+.+.|+.+|++... .....
T Consensus 147 ~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~-~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~ 225 (412)
T PRK05342 147 AGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSIT-RDVSGEGVQQALLKILEGTVASVPPQGGRK 225 (412)
T ss_pred CCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcC-CCcccHHHHHHHHHHHhcCeEEeCCCCCcC
Confidence 33333 334444444322 23467899999999997532111110 111123567778888875321 01111
Q ss_pred cCCCcEEEEEecCCCC----------------------------------------------------ccccccccCCCc
Q 002386 705 CGIGPIAFVASAQSLE----------------------------------------------------KIPQSLTSSGRF 732 (929)
Q Consensus 705 ~~~~~VivIattn~~~----------------------------------------------------~L~~~L~~~~Rf 732 (929)
....+.++|.|+|-.. -+.|.|. +|+
T Consensus 226 ~~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEfl--gRl 303 (412)
T PRK05342 226 HPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFI--GRL 303 (412)
T ss_pred cCCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHh--CCC
Confidence 1112344444443300 0123333 499
Q ss_pred ceEeeCCCCcHHHHHHHHHH----HHh-------hc--ccccCHHHHHHHHhh--cCCCChhhHHHHHHHHHHHHhhcc
Q 002386 733 DFHVQLPAPAASERKAILEH----EIQ-------RR--SLECSDEILLDVASK--CDGYDAYDLEILVDRTVHAAVGRY 796 (929)
Q Consensus 733 ~~~i~l~~Pd~~eR~~IL~~----~l~-------~~--~~~~~d~~l~~LA~~--teG~s~~DL~~Lv~~A~~~a~~r~ 796 (929)
+..+.|.+.+.+++.+|+.. .++ .. .+.++++.+..|++. ..++.+|.|+.++++.+...+.+.
T Consensus 304 d~iv~f~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~~~~~~GAR~Lrriie~~l~~~~~~~ 382 (412)
T PRK05342 304 PVVATLEELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKAIERKTGARGLRSILEEILLDVMFEL 382 (412)
T ss_pred CeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhCCCCCCCCchHHHHHHHHhHHHHHhc
Confidence 99999999999999999972 222 22 345889999999986 467888999999999888887764
No 120
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.39 E-value=8.6e-12 Score=153.22 Aligned_cols=194 Identities=16% Similarity=0.166 Sum_probs=139.7
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCcc------------
Q 002386 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKD------------ 619 (929)
Q Consensus 552 ~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~------------ 619 (929)
+|++++|++.+++.|...+.. ...+..+||+||+|||||++|+.+|+.|.....
T Consensus 13 ~f~eiiGqe~v~~~L~~~i~~--------------~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC 78 (824)
T PRK07764 13 TFAEVIGQEHVTEPLSTALDS--------------GRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSC 78 (824)
T ss_pred CHHHhcCcHHHHHHHHHHHHh--------------CCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHH
Confidence 466888888888777765421 122345899999999999999999999974211
Q ss_pred --------ceeeEEEEeccccccCchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHH
Q 002386 620 --------LVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLV 691 (929)
Q Consensus 620 --------~~~~~~~V~~s~L~~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~ 691 (929)
....++.++... ...+++++.....++.........|+||||+|.|.. .-.+.|+
T Consensus 79 ~~~~~g~~~~~dv~eidaas--~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~---------------~a~NaLL 141 (824)
T PRK07764 79 VALAPGGPGSLDVTEIDAAS--HGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTP---------------QGFNALL 141 (824)
T ss_pred HHHHcCCCCCCcEEEecccc--cCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCH---------------HHHHHHH
Confidence 112344444422 123566666555554444445567999999999852 4456777
Q ss_pred HHHHHhcccccCccCCCcEEEEEecCCCCccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhhcccccCHHHHHHHHh
Q 002386 692 DIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVAS 771 (929)
Q Consensus 692 ~~ld~~~~~~~~~~~~~~VivIattn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~d~~l~~LA~ 771 (929)
..|++... .++||++|+..+.|.+.+++ |+. +++|..++.++..++|+..++..++.++++.+..++.
T Consensus 142 K~LEEpP~---------~~~fIl~tt~~~kLl~TIrS--Rc~-~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~ 209 (824)
T PRK07764 142 KIVEEPPE---------HLKFIFATTEPDKVIGTIRS--RTH-HYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIR 209 (824)
T ss_pred HHHhCCCC---------CeEEEEEeCChhhhhHHHHh--hee-EEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 77776543 36777777777888888888 765 8899999999999999999988888899999999988
Q ss_pred hcCCCChhhHHHHHHHHH
Q 002386 772 KCDGYDAYDLEILVDRTV 789 (929)
Q Consensus 772 ~teG~s~~DL~~Lv~~A~ 789 (929)
.+.| +.+++..++++.+
T Consensus 210 ~sgG-dlR~Al~eLEKLi 226 (824)
T PRK07764 210 AGGG-SVRDSLSVLDQLL 226 (824)
T ss_pred HcCC-CHHHHHHHHHHHH
Confidence 8877 6677777776654
No 121
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.39 E-value=1.3e-11 Score=139.03 Aligned_cols=189 Identities=19% Similarity=0.265 Sum_probs=122.8
Q ss_pred ccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEecccc
Q 002386 553 VSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRL 632 (929)
Q Consensus 553 ~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L 632 (929)
++++.|.+..++.+...+. .+...++||+||||||||++|+++++++.... ....+.+++|+++
T Consensus 14 ~~~~~g~~~~~~~L~~~~~---------------~~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~-~~~~~~~i~~~~~ 77 (337)
T PRK12402 14 LEDILGQDEVVERLSRAVD---------------SPNLPHLLVQGPPGSGKTAAVRALARELYGDP-WENNFTEFNVADF 77 (337)
T ss_pred HHHhcCCHHHHHHHHHHHh---------------CCCCceEEEECCCCCCHHHHHHHHHHHhcCcc-cccceEEechhhh
Confidence 5667777777766655331 11123699999999999999999999986332 1134677888765
Q ss_pred ccCchhh--------------------HHHHHHHHHHHHHh-----cCCcEEEEccccccccCCCCCCCCCCchhHHHHH
Q 002386 633 SLEKGPI--------------------IRQALSNFISEALD-----HAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALT 687 (929)
Q Consensus 633 ~~~~~~~--------------------~~~~l~~~f~~a~~-----~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~ 687 (929)
....... ....++.++..... ..+.+|||||+|.+.. ...
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~---------------~~~ 142 (337)
T PRK12402 78 FDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALRE---------------DAQ 142 (337)
T ss_pred hhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCH---------------HHH
Confidence 3221000 12223333333322 2346999999998741 223
Q ss_pred HHHHHHHHHhcccccCccCCCcEEEEEecCCCCccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhhcccccCHHHHH
Q 002386 688 KFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILL 767 (929)
Q Consensus 688 ~~L~~~ld~~~~~~~~~~~~~~VivIattn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~d~~l~ 767 (929)
+.|...++.... ...+|.+++.+..+.+.|.+ |+. .+.+++|+.+++.++++..+.+.+..++++.+.
T Consensus 143 ~~L~~~le~~~~---------~~~~Il~~~~~~~~~~~L~s--r~~-~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~ 210 (337)
T PRK12402 143 QALRRIMEQYSR---------TCRFIIATRQPSKLIPPIRS--RCL-PLFFRAPTDDELVDVLESIAEAEGVDYDDDGLE 210 (337)
T ss_pred HHHHHHHHhccC---------CCeEEEEeCChhhCchhhcC--Cce-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 445566665432 13345555555667777877 654 789999999999999999999888899999999
Q ss_pred HHHhhcCCCChhhHHHHH
Q 002386 768 DVASKCDGYDAYDLEILV 785 (929)
Q Consensus 768 ~LA~~teG~s~~DL~~Lv 785 (929)
.++..+.| +.+++...+
T Consensus 211 ~l~~~~~g-dlr~l~~~l 227 (337)
T PRK12402 211 LIAYYAGG-DLRKAILTL 227 (337)
T ss_pred HHHHHcCC-CHHHHHHHH
Confidence 99998844 444443333
No 122
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.39 E-value=2.7e-12 Score=148.71 Aligned_cols=172 Identities=16% Similarity=0.229 Sum_probs=117.2
Q ss_pred ceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccccccCchhhHHHHHHHHHHHHHhcCCcEEEEccccccccC
Q 002386 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISS 670 (929)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~ 670 (929)
.+++||||+|+|||+|++++++++.... ..+.|+++..+.......++..-...|.... ....+|+|||++.+.+.
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~---~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~-~~~dvLiIDDiq~l~~k 217 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESG---GKILYVRSELFTEHLVSAIRSGEMQRFRQFY-RNVDALFIEDIEVFSGK 217 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcC---CCEEEeeHHHHHHHHHHHHhcchHHHHHHHc-ccCCEEEEcchhhhcCC
Confidence 4699999999999999999999885432 5678888776544332222211111233322 45779999999987521
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCCCcEEEEEecCCCC---ccccccccCCCcc--eEeeCCCCcHHH
Q 002386 671 SSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLE---KIPQSLTSSGRFD--FHVQLPAPAASE 745 (929)
Q Consensus 671 ~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~VivIattn~~~---~L~~~L~~~~Rf~--~~i~l~~Pd~~e 745 (929)
......+...+....+. . ..+++++...+. .+++.|.+ ||. ..+.+++|+.++
T Consensus 218 ---------~~~qeelf~l~N~l~~~----~-------k~IIlts~~~p~~l~~l~~rL~S--R~~~Gl~~~l~~pd~e~ 275 (445)
T PRK12422 218 ---------GATQEEFFHTFNSLHTE----G-------KLIVISSTCAPQDLKAMEERLIS--RFEWGIAIPLHPLTKEG 275 (445)
T ss_pred ---------hhhHHHHHHHHHHHHHC----C-------CcEEEecCCCHHHHhhhHHHHHh--hhcCCeEEecCCCCHHH
Confidence 11122444444333321 1 234455544444 46788888 884 789999999999
Q ss_pred HHHHHHHHHhhcccccCHHHHHHHHhhcCCCChhhHHHHHHHHH
Q 002386 746 RKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTV 789 (929)
Q Consensus 746 R~~IL~~~l~~~~~~~~d~~l~~LA~~teG~s~~DL~~Lv~~A~ 789 (929)
|.+||+..++..++.++++.++.++....+ +.++|..++.+.+
T Consensus 276 r~~iL~~k~~~~~~~l~~evl~~la~~~~~-dir~L~g~l~~l~ 318 (445)
T PRK12422 276 LRSFLERKAEALSIRIEETALDFLIEALSS-NVKSLLHALTLLA 318 (445)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHH
Confidence 999999999988999999999999998776 5667777666664
No 123
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=4.3e-12 Score=146.28 Aligned_cols=212 Identities=20% Similarity=0.324 Sum_probs=137.4
Q ss_pred ccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEecccc--
Q 002386 555 SLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRL-- 632 (929)
Q Consensus 555 ~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L-- 632 (929)
+-.|++.+++.|++.+.+-.- .+-..+.-+.|+||||+|||+++|.||+.|+ ..|+.++...+
T Consensus 412 DHYgm~dVKeRILEfiAV~kL---------rgs~qGkIlCf~GPPGVGKTSI~kSIA~ALn------RkFfRfSvGG~tD 476 (906)
T KOG2004|consen 412 DHYGMEDVKERILEFIAVGKL---------RGSVQGKILCFVGPPGVGKTSIAKSIARALN------RKFFRFSVGGMTD 476 (906)
T ss_pred cccchHHHHHHHHHHHHHHhh---------cccCCCcEEEEeCCCCCCcccHHHHHHHHhC------CceEEEecccccc
Confidence 456788888888887753211 0122234477999999999999999999998 55666654332
Q ss_pred ----c---cCchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHH-----HHHHHhccc
Q 002386 633 ----S---LEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLV-----DIMDEYGEK 700 (929)
Q Consensus 633 ----~---~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~-----~~ld~~~~~ 700 (929)
. ..++|.+...+-+.+..+.-..| +++|||+|.+.. ...|+ ...++++.|. +++|.|.+-
T Consensus 477 vAeIkGHRRTYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG~---g~qGD----PasALLElLDPEQNanFlDHYLdV 548 (906)
T KOG2004|consen 477 VAEIKGHRRTYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLGS---GHQGD----PASALLELLDPEQNANFLDHYLDV 548 (906)
T ss_pred HHhhcccceeeeccCChHHHHHHHhhCCCCc-eEEeehhhhhCC---CCCCC----hHHHHHHhcChhhccchhhhcccc
Confidence 2 34556666666666666665555 899999999962 11111 1124444332 223333321
Q ss_pred ccCccCCCcEEEEEecCCCCccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhhc----------ccccCHHHHHHHH
Q 002386 701 RKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRR----------SLECSDEILLDVA 770 (929)
Q Consensus 701 ~~~~~~~~~VivIattn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~----------~~~~~d~~l~~LA 770 (929)
..+...|+||+|+|..+.||+.|+. |+. .|+++-+..++...|.+.++-.+ .+.++++.+..+.
T Consensus 549 ---p~DLSkVLFicTAN~idtIP~pLlD--RME-vIelsGYv~eEKv~IA~~yLip~a~~~~gl~~e~v~is~~al~~lI 622 (906)
T KOG2004|consen 549 ---PVDLSKVLFICTANVIDTIPPPLLD--RME-VIELSGYVAEEKVKIAERYLIPQALKDCGLKPEQVKISDDALLALI 622 (906)
T ss_pred ---ccchhheEEEEeccccccCChhhhh--hhh-eeeccCccHHHHHHHHHHhhhhHHHHHcCCCHHhcCccHHHHHHHH
Confidence 2233469999999999999999999 988 89999999999999999887532 2345666555444
Q ss_pred h-hcCCCCh----hhHHHHHHHHHHHHhhc
Q 002386 771 S-KCDGYDA----YDLEILVDRTVHAAVGR 795 (929)
Q Consensus 771 ~-~teG~s~----~DL~~Lv~~A~~~a~~r 795 (929)
+ +|..-.. +.++.+|+.++..-...
T Consensus 623 ~~YcrEaGVRnLqk~iekI~Rk~Al~vv~~ 652 (906)
T KOG2004|consen 623 ERYCREAGVRNLQKQIEKICRKVALKVVEG 652 (906)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Confidence 3 3322222 34566777766554443
No 124
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.39 E-value=1.5e-11 Score=128.67 Aligned_cols=194 Identities=22% Similarity=0.287 Sum_probs=137.9
Q ss_pred ccccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEecc
Q 002386 551 SNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCS 630 (929)
Q Consensus 551 ~~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s 630 (929)
..+++|.|.+.+++.+.+....++. ..+..++||+|++|||||+++|++..++...+ ..++.|.-.
T Consensus 24 ~~l~~L~Gie~Qk~~l~~Nt~~Fl~-----------G~pannvLL~G~rGtGKSSlVkall~~y~~~G---LRlIev~k~ 89 (249)
T PF05673_consen 24 IRLDDLIGIERQKEALIENTEQFLQ-----------GLPANNVLLWGARGTGKSSLVKALLNEYADQG---LRLIEVSKE 89 (249)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHc-----------CCCCcceEEecCCCCCHHHHHHHHHHHHhhcC---ceEEEECHH
Confidence 4567899999999999998876665 34557899999999999999999999987554 456666665
Q ss_pred ccccCchhhHHHHHHHHHHHHH-hcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCCCc
Q 002386 631 RLSLEKGPIIRQALSNFISEAL-DHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (929)
Q Consensus 631 ~L~~~~~~~~~~~l~~~f~~a~-~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (929)
++.. +..+++... ...+-|||+||+. | . ++ ..-...|..+|++-.... +.+
T Consensus 90 ~L~~---------l~~l~~~l~~~~~kFIlf~DDLs--F---e--~~-------d~~yk~LKs~LeGgle~~-----P~N 141 (249)
T PF05673_consen 90 DLGD---------LPELLDLLRDRPYKFILFCDDLS--F---E--EG-------DTEYKALKSVLEGGLEAR-----PDN 141 (249)
T ss_pred Hhcc---------HHHHHHHHhcCCCCEEEEecCCC--C---C--CC-------cHHHHHHHHHhcCccccC-----CCc
Confidence 5432 233333333 2345699999974 2 1 11 133467778888654332 247
Q ss_pred EEEEEecCCCCcccccccc---------------------CCCcceEeeCCCCcHHHHHHHHHHHHhhcccccCHHHHH-
Q 002386 710 IAFVASAQSLEKIPQSLTS---------------------SGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILL- 767 (929)
Q Consensus 710 VivIattn~~~~L~~~L~~---------------------~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~d~~l~- 767 (929)
|++.+|+|+.+.++..+.. ..||+..+.|.+|++++-.+|++.++++.++.++.+.+.
T Consensus 142 vliyATSNRRHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~ 221 (249)
T PF05673_consen 142 VLIYATSNRRHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEELRQ 221 (249)
T ss_pred EEEEEecchhhccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 9999999986655432221 139999999999999999999999999999988865443
Q ss_pred ---HHHhhcCCCChhhHHHHHH
Q 002386 768 ---DVASKCDGYDAYDLEILVD 786 (929)
Q Consensus 768 ---~LA~~teG~s~~DL~~Lv~ 786 (929)
..|....|.+++-....++
T Consensus 222 ~Al~wa~~rg~RSGRtA~QF~~ 243 (249)
T PF05673_consen 222 EALQWALRRGGRSGRTARQFID 243 (249)
T ss_pred HHHHHHHHcCCCCHHHHHHHHH
Confidence 3555567788875555443
No 125
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.38 E-value=7.8e-12 Score=152.57 Aligned_cols=214 Identities=15% Similarity=0.203 Sum_probs=144.2
Q ss_pred ccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEecccccc
Q 002386 555 SLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSL 634 (929)
Q Consensus 555 ~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~~ 634 (929)
.+.|++.+++.+.+.+........ ....+.+++||+||||||||++|+++|+.++ .+++.++|+++..
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~------~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~------~~~i~id~se~~~ 526 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLG------HEHKPVGSFLFAGPTGVGKTEVTVQLSKALG------IELLRFDMSEYME 526 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhcccc------CCCCCcceEEEECCCCCCHHHHHHHHHHHhC------CCcEEeechhhcc
Confidence 467899999999887754322100 0012335799999999999999999999986 6678888877542
Q ss_pred C---------chhhHHHHHHHHHHHH-HhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhc--cccc
Q 002386 635 E---------KGPIIRQALSNFISEA-LDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG--EKRK 702 (929)
Q Consensus 635 ~---------~~~~~~~~l~~~f~~a-~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~--~~~~ 702 (929)
. ..+.....-...+..+ ..+..+||||||+|.+.+ .+.+.|+..|+... ....
T Consensus 527 ~~~~~~LiG~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~~---------------~v~~~LLq~ld~G~ltd~~g 591 (758)
T PRK11034 527 RHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHP---------------DVFNLLLQVMDNGTLTDNNG 591 (758)
T ss_pred cccHHHHcCCCCCcccccccchHHHHHHhCCCcEEEeccHhhhhH---------------HHHHHHHHHHhcCeeecCCC
Confidence 1 1111110001122222 334558999999999853 56777888887432 1111
Q ss_pred CccCCCcEEEEEecCCC-------------------------CccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhh-
Q 002386 703 SSCGIGPIAFVASAQSL-------------------------EKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQR- 756 (929)
Q Consensus 703 ~~~~~~~VivIattn~~-------------------------~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~- 756 (929)
......++++|+|+|.- ..+.|.|.. |++.++.|++.+.++..+|+..++.+
T Consensus 592 ~~vd~rn~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~--Rid~ii~f~~L~~~~l~~I~~~~l~~~ 669 (758)
T PRK11034 592 RKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIVEL 669 (758)
T ss_pred ceecCCCcEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHc--cCCEEEEcCCCCHHHHHHHHHHHHHHH
Confidence 12333478899999832 124466666 99999999999999999998876652
Q ss_pred --------cccccCHHHHHHHHhhc--CCCChhhHHHHHHHHHHHHhhccc
Q 002386 757 --------RSLECSDEILLDVASKC--DGYDAYDLEILVDRTVHAAVGRYL 797 (929)
Q Consensus 757 --------~~~~~~d~~l~~LA~~t--eG~s~~DL~~Lv~~A~~~a~~r~~ 797 (929)
..+.+++..++.|+... ..|.++.|+.++++.+...+.+.+
T Consensus 670 ~~~l~~~~i~l~~~~~~~~~l~~~~~~~~~GAR~l~r~i~~~l~~~la~~i 720 (758)
T PRK11034 670 QAQLDQKGVSLEVSQEARDWLAEKGYDRAMGARPMARVIQDNLKKPLANEL 720 (758)
T ss_pred HHHHHHCCCCceECHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHHHHH
Confidence 23557888899998754 446678899998888877776543
No 126
>PRK04195 replication factor C large subunit; Provisional
Probab=99.38 E-value=6.8e-12 Score=147.96 Aligned_cols=188 Identities=18% Similarity=0.284 Sum_probs=128.5
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccc
Q 002386 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSR 631 (929)
Q Consensus 552 ~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~ 631 (929)
++.++.|.+..++.+.+-+..... ..++.++||+||||||||++|+++|++++ ..++.+++++
T Consensus 12 ~l~dlvg~~~~~~~l~~~l~~~~~-----------g~~~~~lLL~GppG~GKTtla~ala~el~------~~~ielnasd 74 (482)
T PRK04195 12 TLSDVVGNEKAKEQLREWIESWLK-----------GKPKKALLLYGPPGVGKTSLAHALANDYG------WEVIELNASD 74 (482)
T ss_pred CHHHhcCCHHHHHHHHHHHHHHhc-----------CCCCCeEEEECCCCCCHHHHHHHHHHHcC------CCEEEEcccc
Confidence 467888898888888775543221 22357899999999999999999999987 6788888876
Q ss_pred cccCchhhHHHHHHHHHHHHH-h-cCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCCCc
Q 002386 632 LSLEKGPIIRQALSNFISEAL-D-HAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (929)
Q Consensus 632 L~~~~~~~~~~~l~~~f~~a~-~-~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (929)
... ...+...+........ . ..+.+|||||+|.+.+. . . ......|.+.++.. +
T Consensus 75 ~r~--~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~---~----d----~~~~~aL~~~l~~~-----------~ 130 (482)
T PRK04195 75 QRT--ADVIERVAGEAATSGSLFGARRKLILLDEVDGIHGN---E----D----RGGARAILELIKKA-----------K 130 (482)
T ss_pred ccc--HHHHHHHHHHhhccCcccCCCCeEEEEecCcccccc---c----c----hhHHHHHHHHHHcC-----------C
Confidence 542 1222222222111111 1 24679999999998631 0 0 12234455555421 1
Q ss_pred EEEEEecCCCCcccc-ccccCCCcceEeeCCCCcHHHHHHHHHHHHhhcccccCHHHHHHHHhhcCCCChhhHHHHHHH
Q 002386 710 IAFVASAQSLEKIPQ-SLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDR 787 (929)
Q Consensus 710 VivIattn~~~~L~~-~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~d~~l~~LA~~teG~s~~DL~~Lv~~ 787 (929)
..+|+++|....+++ .+++ |+ ..+.|++|+..++..+++..+...++.++++.+..|+..+.| |++.++..
T Consensus 131 ~~iIli~n~~~~~~~k~Lrs--r~-~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~G----DlR~ain~ 202 (482)
T PRK04195 131 QPIILTANDPYDPSLRELRN--AC-LMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGG----DLRSAIND 202 (482)
T ss_pred CCEEEeccCccccchhhHhc--cc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC----CHHHHHHH
Confidence 345566777777766 5655 44 479999999999999999999988999999999999998776 55554443
No 127
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.38 E-value=1.3e-11 Score=145.18 Aligned_cols=193 Identities=20% Similarity=0.247 Sum_probs=134.6
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccc-----------
Q 002386 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL----------- 620 (929)
Q Consensus 552 ~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~----------- 620 (929)
.+.++.|++..++.+.+.+.. ...+.++||+||+|+|||++|+++|+.+......
T Consensus 14 ~F~dIIGQe~iv~~L~~aI~~--------------~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sC 79 (605)
T PRK05896 14 NFKQIIGQELIKKILVNAILN--------------NKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVC 79 (605)
T ss_pred CHHHhcCcHHHHHHHHHHHHc--------------CCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHH
Confidence 456888898888777764321 2223569999999999999999999998642110
Q ss_pred -------eeeEEEEeccccccCchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHH
Q 002386 621 -------VAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDI 693 (929)
Q Consensus 621 -------~~~~~~V~~s~L~~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ 693 (929)
...++.++.+. ....+.++..+..+-.........|++|||+|.+.. .-.+.|+..
T Consensus 80 r~i~~~~h~DiieIdaas--~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~---------------~A~NaLLKt 142 (605)
T PRK05896 80 ESINTNQSVDIVELDAAS--NNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLST---------------SAWNALLKT 142 (605)
T ss_pred HHHHcCCCCceEEecccc--ccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCH---------------HHHHHHHHH
Confidence 01234444332 123445554443332222223446999999998841 234567777
Q ss_pred HHHhcccccCccCCCcEEEEEecCCCCccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhhcccccCHHHHHHHHhhc
Q 002386 694 MDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKC 773 (929)
Q Consensus 694 ld~~~~~~~~~~~~~~VivIattn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~d~~l~~LA~~t 773 (929)
|++... .+++|++|+.+..+.+.+++ |+. .++|++++.++....++..+.+.+..++++.+..++..+
T Consensus 143 LEEPp~---------~tvfIL~Tt~~~KLl~TI~S--Rcq-~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS 210 (605)
T PRK05896 143 LEEPPK---------HVVFIFATTEFQKIPLTIIS--RCQ-RYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLA 210 (605)
T ss_pred HHhCCC---------cEEEEEECCChHhhhHHHHh--hhh-hcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 776432 36777777778899999988 776 789999999999999999988888889999999999988
Q ss_pred CCCChhhHHHHHHHH
Q 002386 774 DGYDAYDLEILVDRT 788 (929)
Q Consensus 774 eG~s~~DL~~Lv~~A 788 (929)
.| +++++..+++.+
T Consensus 211 ~G-dlR~AlnlLekL 224 (605)
T PRK05896 211 DG-SLRDGLSILDQL 224 (605)
T ss_pred CC-cHHHHHHHHHHH
Confidence 77 566666666664
No 128
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.38 E-value=3.2e-13 Score=159.82 Aligned_cols=89 Identities=28% Similarity=0.607 Sum_probs=85.0
Q ss_pred CCCccCCCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHcCCceEEEecccccccc
Q 002386 839 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKY 918 (929)
Q Consensus 839 ~~~~w~dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~glnfIsVkg~ELl~ky 918 (929)
+.+.|+|++|++++|+.+++++++ +++++.|.+.+.+++.|+|||||||||||++|+++|++++.+|+.++++++.++|
T Consensus 50 ~~~~~~di~g~~~~k~~l~~~~~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~ 128 (495)
T TIGR01241 50 PKVTFKDVAGIDEAKEELMEIVDF-LKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMF 128 (495)
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHHH
Confidence 458999999999999999999987 7999999999999999999999999999999999999999999999999999999
Q ss_pred cChhhHHHhh
Q 002386 919 IGASEQAVRR 928 (929)
Q Consensus 919 IG~SEq~VRd 928 (929)
+|.+++++|+
T Consensus 129 ~g~~~~~l~~ 138 (495)
T TIGR01241 129 VGVGASRVRD 138 (495)
T ss_pred hcccHHHHHH
Confidence 9999999885
No 129
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.37 E-value=1.1e-11 Score=148.52 Aligned_cols=194 Identities=19% Similarity=0.247 Sum_probs=134.2
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccce----------
Q 002386 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLV---------- 621 (929)
Q Consensus 552 ~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~---------- 621 (929)
++.++.|++.+++.+.+.+.. ...+..+||+||+|+|||++|+++|+.+.......
T Consensus 16 ~f~dIiGQe~~v~~L~~aI~~--------------~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~ 81 (725)
T PRK07133 16 TFDDIVGQDHIVQTLKNIIKS--------------NKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIE 81 (725)
T ss_pred CHHHhcCcHHHHHHHHHHHHc--------------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHH
Confidence 466888999888877775431 12235689999999999999999999986432100
Q ss_pred -----eeEEEEeccccccCchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHH
Q 002386 622 -----AHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDE 696 (929)
Q Consensus 622 -----~~~~~V~~s~L~~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~ 696 (929)
..++.++... ......++..+..+-.........|+||||+|.+.. ...+.|+..|++
T Consensus 82 ~~~~~~Dvieidaas--n~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~---------------~A~NALLKtLEE 144 (725)
T PRK07133 82 NVNNSLDIIEMDAAS--NNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSK---------------SAFNALLKTLEE 144 (725)
T ss_pred hhcCCCcEEEEeccc--cCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCH---------------HHHHHHHHHhhc
Confidence 0112222211 122344444433332222334456999999998852 345567777776
Q ss_pred hcccccCccCCCcEEEEEecCCCCccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhhcccccCHHHHHHHHhhcCCC
Q 002386 697 YGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGY 776 (929)
Q Consensus 697 ~~~~~~~~~~~~~VivIattn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~d~~l~~LA~~teG~ 776 (929)
... .+++|.+|+.++.|++.+++ |+. .++|.+++.++..+.++..+.+.++.++++.+..+|..+.|
T Consensus 145 PP~---------~tifILaTte~~KLl~TI~S--Rcq-~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~G- 211 (725)
T PRK07133 145 PPK---------HVIFILATTEVHKIPLTILS--RVQ-RFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSG- 211 (725)
T ss_pred CCC---------ceEEEEEcCChhhhhHHHHh--hce-eEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 432 36777777788899999998 776 89999999999999999988888888899989999998887
Q ss_pred ChhhHHHHHHHHH
Q 002386 777 DAYDLEILVDRTV 789 (929)
Q Consensus 777 s~~DL~~Lv~~A~ 789 (929)
+.+++..+++.+.
T Consensus 212 slR~AlslLekl~ 224 (725)
T PRK07133 212 SLRDALSIAEQVS 224 (725)
T ss_pred CHHHHHHHHHHHH
Confidence 5666666666653
No 130
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.37 E-value=1e-11 Score=148.65 Aligned_cols=193 Identities=21% Similarity=0.208 Sum_probs=133.7
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccc-----------
Q 002386 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL----------- 620 (929)
Q Consensus 552 ~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~----------- 620 (929)
+|++++|++.+++.+.+.+.. ...+..+|||||+|+|||++|+++|+.+......
T Consensus 14 ~f~~iiGq~~v~~~L~~~i~~--------------~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c 79 (576)
T PRK14965 14 TFSDLTGQEHVSRTLQNAIDT--------------GRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPC 79 (576)
T ss_pred CHHHccCcHHHHHHHHHHHHc--------------CCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHH
Confidence 466888999888887775421 1234568999999999999999999998743211
Q ss_pred -------eeeEEEEeccccccCchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHH
Q 002386 621 -------VAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDI 693 (929)
Q Consensus 621 -------~~~~~~V~~s~L~~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ 693 (929)
...+++++... ....++++..+..+-.........|+||||+|.+.. .-.+.|+..
T Consensus 80 ~~i~~g~~~d~~eid~~s--~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~---------------~a~naLLk~ 142 (576)
T PRK14965 80 VEITEGRSVDVFEIDGAS--NTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLST---------------NAFNALLKT 142 (576)
T ss_pred HHHhcCCCCCeeeeeccC--ccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCH---------------HHHHHHHHH
Confidence 12244444332 122344444333222111222345999999998852 345677777
Q ss_pred HHHhcccccCccCCCcEEEEEecCCCCccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhhcccccCHHHHHHHHhhc
Q 002386 694 MDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKC 773 (929)
Q Consensus 694 ld~~~~~~~~~~~~~~VivIattn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~d~~l~~LA~~t 773 (929)
|++... .+.||.+|+.++.|.+.+++ |+. .++|.+++.++....+...+++.++.++++.+..++..+
T Consensus 143 LEepp~---------~~~fIl~t~~~~kl~~tI~S--Rc~-~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a 210 (576)
T PRK14965 143 LEEPPP---------HVKFIFATTEPHKVPITILS--RCQ-RFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKG 210 (576)
T ss_pred HHcCCC---------CeEEEEEeCChhhhhHHHHH--hhh-hhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHc
Confidence 776533 36777777888999999998 765 789999999999999999888888999999999999988
Q ss_pred CCCChhhHHHHHHHH
Q 002386 774 DGYDAYDLEILVDRT 788 (929)
Q Consensus 774 eG~s~~DL~~Lv~~A 788 (929)
.| +.+++..+++.+
T Consensus 211 ~G-~lr~al~~Ldql 224 (576)
T PRK14965 211 DG-SMRDSLSTLDQV 224 (576)
T ss_pred CC-CHHHHHHHHHHH
Confidence 87 555555555443
No 131
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.36 E-value=1.8e-11 Score=143.28 Aligned_cols=196 Identities=18% Similarity=0.183 Sum_probs=135.5
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccc-----------
Q 002386 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL----------- 620 (929)
Q Consensus 552 ~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~----------- 620 (929)
+++++.|++...+.+...+.. ...+..+|||||+|+|||++|+++|+.+......
T Consensus 12 ~fdeiiGqe~v~~~L~~~I~~--------------grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C 77 (535)
T PRK08451 12 HFDELIGQESVSKTLSLALDN--------------NRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQC 77 (535)
T ss_pred CHHHccCcHHHHHHHHHHHHc--------------CCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHH
Confidence 467888998887777764421 1233557999999999999999999998532211
Q ss_pred -------eeeEEEEeccccccCchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHH
Q 002386 621 -------VAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDI 693 (929)
Q Consensus 621 -------~~~~~~V~~s~L~~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ 693 (929)
...+..++... ......++..+...-.........|++|||+|.+.. ...+.|+..
T Consensus 78 ~~~~~~~h~dv~eldaas--~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~---------------~A~NALLK~ 140 (535)
T PRK08451 78 QSALENRHIDIIEMDAAS--NRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTK---------------EAFNALLKT 140 (535)
T ss_pred HHHhhcCCCeEEEecccc--ccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCH---------------HHHHHHHHH
Confidence 01233333221 112344444333211111112335999999998852 445667777
Q ss_pred HHHhcccccCccCCCcEEEEEecCCCCccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhhcccccCHHHHHHHHhhc
Q 002386 694 MDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKC 773 (929)
Q Consensus 694 ld~~~~~~~~~~~~~~VivIattn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~d~~l~~LA~~t 773 (929)
+++... .+.+|.+++.+..+.+.+++ |.. +++|.+++.++..+.++..+...+..++++.+..++...
T Consensus 141 LEEpp~---------~t~FIL~ttd~~kL~~tI~S--Rc~-~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s 208 (535)
T PRK08451 141 LEEPPS---------YVKFILATTDPLKLPATILS--RTQ-HFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSG 208 (535)
T ss_pred HhhcCC---------ceEEEEEECChhhCchHHHh--hce-eEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 776532 35666666777899999999 754 889999999999999999998888999999999999988
Q ss_pred CCCChhhHHHHHHHHHHH
Q 002386 774 DGYDAYDLEILVDRTVHA 791 (929)
Q Consensus 774 eG~s~~DL~~Lv~~A~~~ 791 (929)
.| +.+++..+++++...
T Consensus 209 ~G-dlR~alnlLdqai~~ 225 (535)
T PRK08451 209 NG-SLRDTLTLLDQAIIY 225 (535)
T ss_pred CC-cHHHHHHHHHHHHHh
Confidence 87 788888888776643
No 132
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.36 E-value=1.8e-11 Score=136.74 Aligned_cols=175 Identities=21% Similarity=0.326 Sum_probs=121.8
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccc
Q 002386 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSR 631 (929)
Q Consensus 552 ~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~ 631 (929)
+++++.|.+...+.+...+. . ...+..+||+||||+|||++|+++|++++ ..+.+++|+.
T Consensus 19 ~~~~~~~~~~~~~~l~~~~~---~-----------~~~~~~lll~G~~G~GKT~la~~l~~~~~------~~~~~i~~~~ 78 (316)
T PHA02544 19 TIDECILPAADKETFKSIVK---K-----------GRIPNMLLHSPSPGTGKTTVAKALCNEVG------AEVLFVNGSD 78 (316)
T ss_pred cHHHhcCcHHHHHHHHHHHh---c-----------CCCCeEEEeeCcCCCCHHHHHHHHHHHhC------ccceEeccCc
Confidence 46678888888777766442 1 22335577799999999999999999886 5678888877
Q ss_pred cccCchhhHHHHHHHHHHHHHh-cCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCCCcE
Q 002386 632 LSLEKGPIIRQALSNFISEALD-HAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPI 710 (929)
Q Consensus 632 L~~~~~~~~~~~l~~~f~~a~~-~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V 710 (929)
+. ...++..+..+...... ..+.+|||||+|.+.. ......|...++.... .+
T Consensus 79 --~~-~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~--------------~~~~~~L~~~le~~~~---------~~ 132 (316)
T PHA02544 79 --CR-IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGL--------------ADAQRHLRSFMEAYSK---------NC 132 (316)
T ss_pred --cc-HHHHHHHHHHHHHhhcccCCCeEEEEECcccccC--------------HHHHHHHHHHHHhcCC---------Cc
Confidence 22 44444444443332221 3568999999998731 0223445555665432 36
Q ss_pred EEEEecCCCCccccccccCCCcceEeeCCCCcHHHHHHHHHHHHh-------hcccccCHHHHHHHHhhcCC
Q 002386 711 AFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQ-------RRSLECSDEILLDVASKCDG 775 (929)
Q Consensus 711 ivIattn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~-------~~~~~~~d~~l~~LA~~teG 775 (929)
.+|+++|....+++.+++ ||. .+.++.|+.+++.++++.++. ..+..++++.+..++....|
T Consensus 133 ~~Ilt~n~~~~l~~~l~s--R~~-~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~i~~~al~~l~~~~~~ 201 (316)
T PHA02544 133 SFIITANNKNGIIEPLRS--RCR-VIDFGVPTKEEQIEMMKQMIVRCKGILEAEGVEVDMKVLAALVKKNFP 201 (316)
T ss_pred eEEEEcCChhhchHHHHh--hce-EEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCC
Confidence 778888988899999999 886 789999999999887765433 34667888888888887665
No 133
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.36 E-value=1.1e-11 Score=146.58 Aligned_cols=195 Identities=20% Similarity=0.250 Sum_probs=133.5
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccc-----------
Q 002386 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL----------- 620 (929)
Q Consensus 552 ~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~----------- 620 (929)
+|+++.|++..++.+.+.+.. ...+..+||+||+|+||||+|+.+|+.+......
T Consensus 14 ~f~divGq~~v~~~L~~~i~~--------------~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C 79 (527)
T PRK14969 14 SFSELVGQEHVVRALTNALEQ--------------QRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSAC 79 (527)
T ss_pred cHHHhcCcHHHHHHHHHHHHc--------------CCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHH
Confidence 466888999888877764421 1223458999999999999999999998643110
Q ss_pred -------eeeEEEEeccccccCchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHH
Q 002386 621 -------VAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDI 693 (929)
Q Consensus 621 -------~~~~~~V~~s~L~~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ 693 (929)
...++.++.+. ......++..+.............|+||||+|.+.. .-.+.|+..
T Consensus 80 ~~i~~~~~~d~~ei~~~~--~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~---------------~a~naLLK~ 142 (527)
T PRK14969 80 LEIDSGRFVDLIEVDAAS--NTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSK---------------SAFNAMLKT 142 (527)
T ss_pred HHHhcCCCCceeEeeccc--cCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCH---------------HHHHHHHHH
Confidence 11233444332 223444444333322222223446999999998841 334556666
Q ss_pred HHHhcccccCccCCCcEEEEEecCCCCccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhhcccccCHHHHHHHHhhc
Q 002386 694 MDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKC 773 (929)
Q Consensus 694 ld~~~~~~~~~~~~~~VivIattn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~d~~l~~LA~~t 773 (929)
+++... .+.+|.+|+.++.+.+.+++ |+. .++|++++.++..+.+...+...++.+++..+..++..+
T Consensus 143 LEepp~---------~~~fIL~t~d~~kil~tI~S--Rc~-~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s 210 (527)
T PRK14969 143 LEEPPE---------HVKFILATTDPQKIPVTVLS--RCL-QFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAA 210 (527)
T ss_pred HhCCCC---------CEEEEEEeCChhhCchhHHH--HHH-HHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 666432 36777777778888888888 764 889999999999999998888888888999999999987
Q ss_pred CCCChhhHHHHHHHHHH
Q 002386 774 DGYDAYDLEILVDRTVH 790 (929)
Q Consensus 774 eG~s~~DL~~Lv~~A~~ 790 (929)
.| +.++...+++.++.
T Consensus 211 ~G-slr~al~lldqai~ 226 (527)
T PRK14969 211 AG-SMRDALSLLDQAIA 226 (527)
T ss_pred CC-CHHHHHHHHHHHHH
Confidence 76 67777777776643
No 134
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.36 E-value=9.3e-12 Score=131.44 Aligned_cols=174 Identities=20% Similarity=0.365 Sum_probs=113.6
Q ss_pred ceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccccccCchhhHHH-HHHHHHHHHHhcCCcEEEEcccccccc
Q 002386 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQ-ALSNFISEALDHAPSIVIFDNLDSIIS 669 (929)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~~~~~~~~~~-~l~~~f~~a~~~~PsVL~LDEiD~L~~ 669 (929)
..++||||+|+|||+|+++++.++..... ...++|+++.++.......+.. .+.++.+.. ....+|+|||++.+.+
T Consensus 35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~-~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~--~~~DlL~iDDi~~l~~ 111 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHLLQAIANEAQKQHP-GKRVVYLSAEEFIREFADALRDGEIEEFKDRL--RSADLLIIDDIQFLAG 111 (219)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHCT-TS-EEEEEHHHHHHHHHHHHHTTSHHHHHHHH--CTSSEEEEETGGGGTT
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhccc-cccceeecHHHHHHHHHHHHHcccchhhhhhh--hcCCEEEEecchhhcC
Confidence 35999999999999999999998754321 1568889887766544333322 122222222 3567999999999852
Q ss_pred CCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCCCcEEEEEecCCCCc---cccccccCCCcc--eEeeCCCCcHH
Q 002386 670 SSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEK---IPQSLTSSGRFD--FHVQLPAPAAS 744 (929)
Q Consensus 670 ~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~VivIattn~~~~---L~~~L~~~~Rf~--~~i~l~~Pd~~ 744 (929)
. ....+.|..+++.+.... ..+++++...|.. +++.|.+ ||. ..+.+.+|+.+
T Consensus 112 ---------~----~~~q~~lf~l~n~~~~~~-------k~li~ts~~~P~~l~~~~~~L~S--Rl~~Gl~~~l~~pd~~ 169 (219)
T PF00308_consen 112 ---------K----QRTQEELFHLFNRLIESG-------KQLILTSDRPPSELSGLLPDLRS--RLSWGLVVELQPPDDE 169 (219)
T ss_dssp ---------H----HHHHHHHHHHHHHHHHTT-------SEEEEEESS-TTTTTTS-HHHHH--HHHCSEEEEE----HH
T ss_pred ---------c----hHHHHHHHHHHHHHHhhC-------CeEEEEeCCCCccccccChhhhh--hHhhcchhhcCCCCHH
Confidence 1 123344444444443322 2455665555554 4677888 775 58899999999
Q ss_pred HHHHHHHHHHhhcccccCHHHHHHHHhhcCCCChhhHHHHHHHHHH
Q 002386 745 ERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVH 790 (929)
Q Consensus 745 eR~~IL~~~l~~~~~~~~d~~l~~LA~~teG~s~~DL~~Lv~~A~~ 790 (929)
.|.+|++..+..+++.++++.++.|+....+ +.++|..++++...
T Consensus 170 ~r~~il~~~a~~~~~~l~~~v~~~l~~~~~~-~~r~L~~~l~~l~~ 214 (219)
T PF00308_consen 170 DRRRILQKKAKERGIELPEEVIEYLARRFRR-DVRELEGALNRLDA 214 (219)
T ss_dssp HHHHHHHHHHHHTT--S-HHHHHHHHHHTTS-SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCcHHHHHHHHHhhcC-CHHHHHHHHHHHHH
Confidence 9999999999999999999999999999776 77788888777643
No 135
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.35 E-value=2e-11 Score=138.65 Aligned_cols=190 Identities=19% Similarity=0.258 Sum_probs=129.8
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccc-----------
Q 002386 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL----------- 620 (929)
Q Consensus 552 ~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~----------- 620 (929)
.+.++.|.+..++.+.+.+.. ...+..+||+||||+|||++|+++++.+......
T Consensus 12 ~~~~iig~~~~~~~l~~~~~~--------------~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c 77 (355)
T TIGR02397 12 TFEDVIGQEHIVQTLKNAIKN--------------GRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESC 77 (355)
T ss_pred cHhhccCcHHHHHHHHHHHHc--------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHH
Confidence 456778899888888774421 1234568999999999999999999998633110
Q ss_pred -------eeeEEEEeccccccCchhhHHHHHHHHHHHHHh----cCCcEEEEccccccccCCCCCCCCCCchhHHHHHHH
Q 002386 621 -------VAHIVFVCCSRLSLEKGPIIRQALSNFISEALD----HAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKF 689 (929)
Q Consensus 621 -------~~~~~~V~~s~L~~~~~~~~~~~l~~~f~~a~~----~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~ 689 (929)
...++.++... ...... ++++++.+.. ....|++|||+|.+.. ...+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~--~~~~~~----~~~l~~~~~~~p~~~~~~vviidea~~l~~---------------~~~~~ 136 (355)
T TIGR02397 78 KEINSGSSLDVIEIDAAS--NNGVDD----IREILDNVKYAPSSGKYKVYIIDEVHMLSK---------------SAFNA 136 (355)
T ss_pred HHHhcCCCCCEEEeeccc--cCCHHH----HHHHHHHHhcCcccCCceEEEEeChhhcCH---------------HHHHH
Confidence 12234443321 112222 3344444432 2345999999998741 23344
Q ss_pred HHHHHHHhcccccCccCCCcEEEEEecCCCCccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhhcccccCHHHHHHH
Q 002386 690 LVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDV 769 (929)
Q Consensus 690 L~~~ld~~~~~~~~~~~~~~VivIattn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~d~~l~~L 769 (929)
|+..+++... .+++|.+++.++.+.+.+++ |+. .++|++|+.++..++++..+++.+..++++.+..+
T Consensus 137 Ll~~le~~~~---------~~~lIl~~~~~~~l~~~l~s--r~~-~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l 204 (355)
T TIGR02397 137 LLKTLEEPPE---------HVVFILATTEPHKIPATILS--RCQ-RFDFKRIPLEDIVERLKKILDKEGIKIEDEALELI 204 (355)
T ss_pred HHHHHhCCcc---------ceeEEEEeCCHHHHHHHHHh--hee-EEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 5555554321 36677777878888888888 775 78999999999999999999988888999999999
Q ss_pred HhhcCCCChhhHHHHHHHHH
Q 002386 770 ASKCDGYDAYDLEILVDRTV 789 (929)
Q Consensus 770 A~~teG~s~~DL~~Lv~~A~ 789 (929)
+..+.| +++.+...++.+.
T Consensus 205 ~~~~~g-~~~~a~~~lekl~ 223 (355)
T TIGR02397 205 ARAADG-SLRDALSLLDQLI 223 (355)
T ss_pred HHHcCC-ChHHHHHHHHHHH
Confidence 998876 5566666665554
No 136
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.35 E-value=1.9e-11 Score=145.28 Aligned_cols=194 Identities=20% Similarity=0.251 Sum_probs=135.9
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccc-----------
Q 002386 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL----------- 620 (929)
Q Consensus 552 ~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~----------- 620 (929)
++.++.|++..++.+...+.. ...+..+|||||+|+|||++|+++|+.+......
T Consensus 14 ~f~diiGqe~iv~~L~~~i~~--------------~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C 79 (563)
T PRK06647 14 DFNSLEGQDFVVETLKHSIES--------------NKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSC 79 (563)
T ss_pred CHHHccCcHHHHHHHHHHHHc--------------CCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHH
Confidence 466888999988887775531 1223569999999999999999999998743110
Q ss_pred -------eeeEEEEeccccccCchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHH
Q 002386 621 -------VAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDI 693 (929)
Q Consensus 621 -------~~~~~~V~~s~L~~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ 693 (929)
...++.++... ......++.....+..........|+||||+|.+.. ...+.|+..
T Consensus 80 ~~i~~~~~~dv~~idgas--~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~---------------~a~naLLK~ 142 (563)
T PRK06647 80 KSIDNDNSLDVIEIDGAS--NTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSN---------------SAFNALLKT 142 (563)
T ss_pred HHHHcCCCCCeEEecCcc--cCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCH---------------HHHHHHHHh
Confidence 01223332211 122344444433333333334567999999998841 344556666
Q ss_pred HHHhcccccCccCCCcEEEEEecCCCCccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhhcccccCHHHHHHHHhhc
Q 002386 694 MDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKC 773 (929)
Q Consensus 694 ld~~~~~~~~~~~~~~VivIattn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~d~~l~~LA~~t 773 (929)
+++... .+++|++++.+..+.+.+++ |+. .++|.+++.++..++++..+...++.++++.+..++...
T Consensus 143 LEepp~---------~~vfI~~tte~~kL~~tI~S--Rc~-~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s 210 (563)
T PRK06647 143 IEEPPP---------YIVFIFATTEVHKLPATIKS--RCQ-HFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKS 210 (563)
T ss_pred hccCCC---------CEEEEEecCChHHhHHHHHH--hce-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 665332 36777777777889999988 776 789999999999999999988888889999999999988
Q ss_pred CCCChhhHHHHHHHHH
Q 002386 774 DGYDAYDLEILVDRTV 789 (929)
Q Consensus 774 eG~s~~DL~~Lv~~A~ 789 (929)
.| +.+++..+++++.
T Consensus 211 ~G-dlR~alslLdkli 225 (563)
T PRK06647 211 TG-SVRDAYTLFDQVV 225 (563)
T ss_pred CC-CHHHHHHHHHHHH
Confidence 77 6777777777654
No 137
>PRK05642 DNA replication initiation factor; Validated
Probab=99.35 E-value=1.6e-11 Score=131.11 Aligned_cols=168 Identities=19% Similarity=0.254 Sum_probs=116.3
Q ss_pred ceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccccccCchhhHHHHHHHHHHHHHhcCCcEEEEccccccccC
Q 002386 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISS 670 (929)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~ 670 (929)
.+++|+||+|+|||+|++++++++.... ..+.|+++.++.... ..+++... ...+|+|||++.+.+.
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~---~~v~y~~~~~~~~~~--------~~~~~~~~--~~d~LiiDDi~~~~~~ 112 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRG---EPAVYLPLAELLDRG--------PELLDNLE--QYELVCLDDLDVIAGK 112 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCC---CcEEEeeHHHHHhhh--------HHHHHhhh--hCCEEEEechhhhcCC
Confidence 5699999999999999999999875332 457788887765321 11222221 2359999999987521
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCCCcEEEEEecCCCCcc---ccccccCCCc--ceEeeCCCCcHHH
Q 002386 671 SSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKI---PQSLTSSGRF--DFHVQLPAPAASE 745 (929)
Q Consensus 671 ~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~VivIattn~~~~L---~~~L~~~~Rf--~~~i~l~~Pd~~e 745 (929)
......+. .+++.+.... ..++++++..+..+ .+.|++ || ...+.+.+|+.++
T Consensus 113 ---------~~~~~~Lf----~l~n~~~~~g-------~~ilits~~~p~~l~~~~~~L~S--Rl~~gl~~~l~~~~~e~ 170 (234)
T PRK05642 113 ---------ADWEEALF----HLFNRLRDSG-------RRLLLAASKSPRELPIKLPDLKS--RLTLALVFQMRGLSDED 170 (234)
T ss_pred ---------hHHHHHHH----HHHHHHHhcC-------CEEEEeCCCCHHHcCccCccHHH--HHhcCeeeecCCCCHHH
Confidence 11112344 4444333221 25666666555433 588888 77 4688999999999
Q ss_pred HHHHHHHHHhhcccccCHHHHHHHHhhcCCCChhhHHHHHHHHHHHHhh
Q 002386 746 RKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAAVG 794 (929)
Q Consensus 746 R~~IL~~~l~~~~~~~~d~~l~~LA~~teG~s~~DL~~Lv~~A~~~a~~ 794 (929)
|.++++..+..+++.++++.++.++...++ +.+.+..++++....++.
T Consensus 171 ~~~il~~ka~~~~~~l~~ev~~~L~~~~~~-d~r~l~~~l~~l~~~~l~ 218 (234)
T PRK05642 171 KLRALQLRASRRGLHLTDEVGHFILTRGTR-SMSALFDLLERLDQASLQ 218 (234)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHH
Confidence 999999777777899999999999999887 677788777776554443
No 138
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.35 E-value=1.3e-11 Score=131.37 Aligned_cols=163 Identities=16% Similarity=0.224 Sum_probs=110.6
Q ss_pred CCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccccccCchhhHHHHHHHHHHHHHhcCCcEEEEccccccc
Q 002386 589 LPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSII 668 (929)
Q Consensus 589 ~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~ 668 (929)
...+++|+|++|||||+||+++++++.... ..+.+++|..+... + .......+|+|||+|.+-
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~~~~~~---~~~~~i~~~~~~~~------------~--~~~~~~~~liiDdi~~l~ 103 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVADASYGG---RNARYLDAASPLLA------------F--DFDPEAELYAVDDVERLD 103 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhCC---CcEEEEehHHhHHH------------H--hhcccCCEEEEeChhhcC
Confidence 346799999999999999999999874322 56788888664311 1 112346799999999863
Q ss_pred cCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCCCcEEEEEecCCCC--ccccccccCCCc--ceEeeCCCCcHH
Q 002386 669 SSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLE--KIPQSLTSSGRF--DFHVQLPAPAAS 744 (929)
Q Consensus 669 ~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~VivIattn~~~--~L~~~L~~~~Rf--~~~i~l~~Pd~~ 744 (929)
+ .....|...++....... .+++++++..+. .+.+.|.+ || ...+++++|+.+
T Consensus 104 ~---------------~~~~~L~~~~~~~~~~~~------~~vl~~~~~~~~~~~l~~~L~s--r~~~~~~i~l~pl~~~ 160 (227)
T PRK08903 104 D---------------AQQIALFNLFNRVRAHGQ------GALLVAGPAAPLALPLREDLRT--RLGWGLVYELKPLSDA 160 (227)
T ss_pred c---------------hHHHHHHHHHHHHHHcCC------cEEEEeCCCCHHhCCCCHHHHH--HHhcCeEEEecCCCHH
Confidence 1 111233344443332210 134444333222 24466666 66 468999999999
Q ss_pred HHHHHHHHHHhhcccccCHHHHHHHHhhcCCCChhhHHHHHHHHHHHH
Q 002386 745 ERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAA 792 (929)
Q Consensus 745 eR~~IL~~~l~~~~~~~~d~~l~~LA~~teG~s~~DL~~Lv~~A~~~a 792 (929)
++..+++......++.++++.+..|+....| +.+++..+++.....+
T Consensus 161 ~~~~~l~~~~~~~~v~l~~~al~~L~~~~~g-n~~~l~~~l~~l~~~~ 207 (227)
T PRK08903 161 DKIAALKAAAAERGLQLADEVPDYLLTHFRR-DMPSLMALLDALDRYS 207 (227)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHHHHH
Confidence 9999999888888899999999999996554 8888888888754434
No 139
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.34 E-value=3e-11 Score=137.97 Aligned_cols=190 Identities=22% Similarity=0.259 Sum_probs=127.8
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCcc------ceeeEE
Q 002386 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKD------LVAHIV 625 (929)
Q Consensus 552 ~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~------~~~~~~ 625 (929)
+++++.|++..++.+.+.+.. ...+.++|||||||+|||++|+++|+.+..... ....+.
T Consensus 15 ~~~~iig~~~~~~~l~~~i~~--------------~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~ 80 (367)
T PRK14970 15 TFDDVVGQSHITNTLLNAIEN--------------NHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIF 80 (367)
T ss_pred cHHhcCCcHHHHHHHHHHHHc--------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceE
Confidence 466788898888777775421 123467999999999999999999999864211 011222
Q ss_pred EEeccccccCchhhHHHHHHHHHHHHH----hcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccc
Q 002386 626 FVCCSRLSLEKGPIIRQALSNFISEAL----DHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKR 701 (929)
Q Consensus 626 ~V~~s~L~~~~~~~~~~~l~~~f~~a~----~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~ 701 (929)
.++.. .......++ .+++.+. ...+.+++|||+|.+.. ...+.|+..+++...
T Consensus 81 ~l~~~--~~~~~~~i~----~l~~~~~~~p~~~~~kiviIDE~~~l~~---------------~~~~~ll~~le~~~~-- 137 (367)
T PRK14970 81 ELDAA--SNNSVDDIR----NLIDQVRIPPQTGKYKIYIIDEVHMLSS---------------AAFNAFLKTLEEPPA-- 137 (367)
T ss_pred Eeccc--cCCCHHHHH----HHHHHHhhccccCCcEEEEEeChhhcCH---------------HHHHHHHHHHhCCCC--
Confidence 22221 112223333 4444332 23456999999998742 223455555554221
Q ss_pred cCccCCCcEEEEEecCCCCccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhhcccccCHHHHHHHHhhcCCCChhhH
Q 002386 702 KSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDL 781 (929)
Q Consensus 702 ~~~~~~~~VivIattn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~d~~l~~LA~~teG~s~~DL 781 (929)
..++|.+++....+.+++.+ |+. .+++++|+.++...++...+.+.++.++++.+..++..+.| +.+.+
T Consensus 138 -------~~~~Il~~~~~~kl~~~l~s--r~~-~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~g-dlr~~ 206 (367)
T PRK14970 138 -------HAIFILATTEKHKIIPTILS--RCQ-IFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADG-ALRDA 206 (367)
T ss_pred -------ceEEEEEeCCcccCCHHHHh--cce-eEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC-CHHHH
Confidence 24555566667788888888 665 68999999999999999999888999999999999998766 66666
Q ss_pred HHHHHHHH
Q 002386 782 EILVDRTV 789 (929)
Q Consensus 782 ~~Lv~~A~ 789 (929)
...+++..
T Consensus 207 ~~~lekl~ 214 (367)
T PRK14970 207 LSIFDRVV 214 (367)
T ss_pred HHHHHHHH
Confidence 66666554
No 140
>PRK08727 hypothetical protein; Validated
Probab=99.34 E-value=1.3e-11 Score=131.63 Aligned_cols=164 Identities=23% Similarity=0.298 Sum_probs=109.2
Q ss_pred ceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccccccCchhhHHHHHHHHHHHHHhcCCcEEEEccccccccC
Q 002386 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISS 670 (929)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~ 670 (929)
..++|+||+|||||+|+++++.++.... ..+.|++..++.. .+.+.++.. ....+|+|||++.+..
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~---~~~~y~~~~~~~~--------~~~~~~~~l--~~~dlLiIDDi~~l~~- 107 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAG---RSSAYLPLQAAAG--------RLRDALEAL--EGRSLVALDGLESIAG- 107 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcC---CcEEEEeHHHhhh--------hHHHHHHHH--hcCCEEEEeCcccccC-
Confidence 4599999999999999999999875432 3456666544332 222333332 3557999999998752
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCCCcEEEEEecCCCCcc---ccccccCCCc--ceEeeCCCCcHHH
Q 002386 671 SSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKI---PQSLTSSGRF--DFHVQLPAPAASE 745 (929)
Q Consensus 671 ~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~VivIattn~~~~L---~~~L~~~~Rf--~~~i~l~~Pd~~e 745 (929)
.. .....+. +.++...... .-+++++...+..+ .+.|++ || ..++.+++|+.++
T Consensus 108 --~~------~~~~~lf----~l~n~~~~~~-------~~vI~ts~~~p~~l~~~~~dL~S--Rl~~~~~~~l~~~~~e~ 166 (233)
T PRK08727 108 --QR------EDEVALF----DFHNRARAAG-------ITLLYTARQMPDGLALVLPDLRS--RLAQCIRIGLPVLDDVA 166 (233)
T ss_pred --Ch------HHHHHHH----HHHHHHHHcC-------CeEEEECCCChhhhhhhhHHHHH--HHhcCceEEecCCCHHH
Confidence 11 1112233 3444333221 12334444455555 688888 76 4688999999999
Q ss_pred HHHHHHHHHhhcccccCHHHHHHHHhhcCCCChhhHHHHHHHHHH
Q 002386 746 RKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVH 790 (929)
Q Consensus 746 R~~IL~~~l~~~~~~~~d~~l~~LA~~teG~s~~DL~~Lv~~A~~ 790 (929)
|.+|++..+..+++.++++.+..|+..+.| +.+.+..++++...
T Consensus 167 ~~~iL~~~a~~~~l~l~~e~~~~La~~~~r-d~r~~l~~L~~l~~ 210 (233)
T PRK08727 167 RAAVLRERAQRRGLALDEAAIDWLLTHGER-ELAGLVALLDRLDR 210 (233)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 999999988878899999999999999875 34444444655543
No 141
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.34 E-value=2.8e-11 Score=143.14 Aligned_cols=192 Identities=16% Similarity=0.210 Sum_probs=130.5
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCcc------------
Q 002386 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKD------------ 619 (929)
Q Consensus 552 ~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~------------ 619 (929)
+|+++.|++..++.+.+.+.. ...+.++||+||+|+|||++|+.+|+.+.....
T Consensus 14 sf~dIiGQe~v~~~L~~ai~~--------------~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC 79 (624)
T PRK14959 14 TFAEVAGQETVKAILSRAAQE--------------NRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQC 79 (624)
T ss_pred CHHHhcCCHHHHHHHHHHHHc--------------CCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHH
Confidence 456778888777666654321 112346999999999999999999999974210
Q ss_pred ------ceeeEEEEeccccccCchhhHHHHHHHHHHH-HHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHH
Q 002386 620 ------LVAHIVFVCCSRLSLEKGPIIRQALSNFISE-ALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVD 692 (929)
Q Consensus 620 ------~~~~~~~V~~s~L~~~~~~~~~~~l~~~f~~-a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~ 692 (929)
....++.++... ......++.. .+.+.. .......|+||||+|.+.. ...+.|+.
T Consensus 80 ~~i~~g~hpDv~eId~a~--~~~Id~iR~L-~~~~~~~p~~g~~kVIIIDEad~Lt~---------------~a~naLLk 141 (624)
T PRK14959 80 RKVTQGMHVDVVEIDGAS--NRGIDDAKRL-KEAIGYAPMEGRYKVFIIDEAHMLTR---------------EAFNALLK 141 (624)
T ss_pred HHHhcCCCCceEEEeccc--ccCHHHHHHH-HHHHHhhhhcCCceEEEEEChHhCCH---------------HHHHHHHH
Confidence 011244444322 1234444442 222222 2223456999999999841 33466667
Q ss_pred HHHHhcccccCccCCCcEEEEEecCCCCccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhhcccccCHHHHHHHHhh
Q 002386 693 IMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASK 772 (929)
Q Consensus 693 ~ld~~~~~~~~~~~~~~VivIattn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~d~~l~~LA~~ 772 (929)
.+++... .+++|++|+.+..+.+.+++ |+. +++|++++.++..++|+..+...++.++++.+..++..
T Consensus 142 ~LEEP~~---------~~ifILaTt~~~kll~TI~S--Rcq-~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~ 209 (624)
T PRK14959 142 TLEEPPA---------RVTFVLATTEPHKFPVTIVS--RCQ-HFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARR 209 (624)
T ss_pred HhhccCC---------CEEEEEecCChhhhhHHHHh--hhh-ccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 7765432 37777888888888888888 775 78999999999999999988888888999999999998
Q ss_pred cCCCChhhHHHHHHHH
Q 002386 773 CDGYDAYDLEILVDRT 788 (929)
Q Consensus 773 teG~s~~DL~~Lv~~A 788 (929)
+.| +.+++..+++++
T Consensus 210 s~G-dlR~Al~lLeql 224 (624)
T PRK14959 210 AAG-SVRDSMSLLGQV 224 (624)
T ss_pred cCC-CHHHHHHHHHHH
Confidence 876 445555555543
No 142
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.33 E-value=3.9e-11 Score=143.17 Aligned_cols=194 Identities=18% Similarity=0.234 Sum_probs=135.4
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccc-----------
Q 002386 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL----------- 620 (929)
Q Consensus 552 ~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~----------- 620 (929)
+|.+++|++..++.+.+.+.. ...+.++||+||+|+|||++|+++|+.+......
T Consensus 22 ~f~dliGq~~~v~~L~~~~~~--------------gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg 87 (598)
T PRK09111 22 TFDDLIGQEAMVRTLTNAFET--------------GRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCG 87 (598)
T ss_pred CHHHhcCcHHHHHHHHHHHHc--------------CCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCc
Confidence 467889999888887774421 2334679999999999999999999998743210
Q ss_pred ------------eeeEEEEeccccccCchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHH
Q 002386 621 ------------VAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTK 688 (929)
Q Consensus 621 ------------~~~~~~V~~s~L~~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~ 688 (929)
...++.++... ...++.++..+..+-.........|+||||+|.+.. .-.+
T Consensus 88 ~c~~C~~i~~g~h~Dv~e~~a~s--~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~---------------~a~n 150 (598)
T PRK09111 88 VGEHCQAIMEGRHVDVLEMDAAS--HTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLST---------------AAFN 150 (598)
T ss_pred ccHHHHHHhcCCCCceEEecccc--cCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCH---------------HHHH
Confidence 01122333221 122444444443322222223456999999999841 3456
Q ss_pred HHHHHHHHhcccccCccCCCcEEEEEecCCCCccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhhcccccCHHHHHH
Q 002386 689 FLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLD 768 (929)
Q Consensus 689 ~L~~~ld~~~~~~~~~~~~~~VivIattn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~d~~l~~ 768 (929)
.|+..|++... .+.||.+++..+.+.+.+++ |+. .++|..++.++..+.++..+++.+..++++.+..
T Consensus 151 aLLKtLEePp~---------~~~fIl~tte~~kll~tI~S--Rcq-~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~l 218 (598)
T PRK09111 151 ALLKTLEEPPP---------HVKFIFATTEIRKVPVTVLS--RCQ-RFDLRRIEADVLAAHLSRIAAKEGVEVEDEALAL 218 (598)
T ss_pred HHHHHHHhCCC---------CeEEEEEeCChhhhhHHHHh--hee-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 67777776543 35666666777778888888 765 7899999999999999999998899999999999
Q ss_pred HHhhcCCCChhhHHHHHHHHH
Q 002386 769 VASKCDGYDAYDLEILVDRTV 789 (929)
Q Consensus 769 LA~~teG~s~~DL~~Lv~~A~ 789 (929)
++..+.| +.+++..+++.++
T Consensus 219 Ia~~a~G-dlr~al~~Ldkli 238 (598)
T PRK09111 219 IARAAEG-SVRDGLSLLDQAI 238 (598)
T ss_pred HHHHcCC-CHHHHHHHHHHHH
Confidence 9998887 6777777776654
No 143
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.32 E-value=2.6e-11 Score=147.34 Aligned_cols=161 Identities=20% Similarity=0.323 Sum_probs=111.1
Q ss_pred ceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccccccCchhhHHHHHHHHHHHH-HhcCCcEEEEcccccccc
Q 002386 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEA-LDHAPSIVIFDNLDSIIS 669 (929)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~~~~~~~~~~~l~~~f~~a-~~~~PsVL~LDEiD~L~~ 669 (929)
.+++|+|||||||||+|+++|+.+. ..+..+++... ....++..+....... ......+|||||+|.+..
T Consensus 53 ~slLL~GPpGtGKTTLA~aIA~~~~------~~f~~lna~~~---~i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~ 123 (725)
T PRK13341 53 GSLILYGPPGVGKTTLARIIANHTR------AHFSSLNAVLA---GVKDLRAEVDRAKERLERHGKRTILFIDEVHRFNK 123 (725)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhc------Ccceeehhhhh---hhHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCH
Confidence 4799999999999999999999876 55677776531 1223333333221111 123467999999998741
Q ss_pred CCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCCCcEEEEEecC--CCCccccccccCCCcceEeeCCCCcHHHHH
Q 002386 670 SSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQ--SLEKIPQSLTSSGRFDFHVQLPAPAASERK 747 (929)
Q Consensus 670 ~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~VivIattn--~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~ 747 (929)
...+.|+..++. +.+++|+++. ....+++++.+ |.. .+.|++++.+++.
T Consensus 124 ---------------~qQdaLL~~lE~-----------g~IiLI~aTTenp~~~l~~aL~S--R~~-v~~l~pLs~edi~ 174 (725)
T PRK13341 124 ---------------AQQDALLPWVEN-----------GTITLIGATTENPYFEVNKALVS--RSR-LFRLKSLSDEDLH 174 (725)
T ss_pred ---------------HHHHHHHHHhcC-----------ceEEEEEecCCChHhhhhhHhhc--ccc-ceecCCCCHHHHH
Confidence 122344444432 1366666553 33468889988 643 7899999999999
Q ss_pred HHHHHHHh-------hcccccCHHHHHHHHhhcCCCChhhHHHHHHHHHH
Q 002386 748 AILEHEIQ-------RRSLECSDEILLDVASKCDGYDAYDLEILVDRTVH 790 (929)
Q Consensus 748 ~IL~~~l~-------~~~~~~~d~~l~~LA~~teG~s~~DL~~Lv~~A~~ 790 (929)
.+++..+. ..++.++++.+..|+..+.| +.+.+.++++.++.
T Consensus 175 ~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~G-D~R~lln~Le~a~~ 223 (725)
T PRK13341 175 QLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANG-DARSLLNALELAVE 223 (725)
T ss_pred HHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 99999887 34577899999999998855 67777777777653
No 144
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.32 E-value=3.4e-11 Score=137.21 Aligned_cols=193 Identities=17% Similarity=0.176 Sum_probs=123.1
Q ss_pred ccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCcc-------------
Q 002386 553 VSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKD------------- 619 (929)
Q Consensus 553 ~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~------------- 619 (929)
+++++|++.+++.+.+.+..-.. .+..++...+.++||+||+|+|||++|+++|+.+.....
T Consensus 4 f~~IiGq~~~~~~L~~~i~~~~~-----~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~ 78 (394)
T PRK07940 4 WDDLVGQEAVVAELRAAARAARA-----DVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRT 78 (394)
T ss_pred hhhccChHHHHHHHHHHHHhccc-----cccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHH
Confidence 56788999998888876542111 112233345677999999999999999999998864321
Q ss_pred ----ceeeEEEEeccccccCchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHH
Q 002386 620 ----LVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMD 695 (929)
Q Consensus 620 ----~~~~~~~V~~s~L~~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld 695 (929)
....+.++.+.. ..-.+++++..++.+..........|+||||+|.+.. .-.+.|+..|+
T Consensus 79 ~~~~~hpD~~~i~~~~-~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~---------------~aanaLLk~LE 142 (394)
T PRK07940 79 VLAGTHPDVRVVAPEG-LSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTE---------------RAANALLKAVE 142 (394)
T ss_pred HhcCCCCCEEEecccc-ccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCH---------------HHHHHHHHHhh
Confidence 001122333321 1123444444333332222223456999999999852 23456777776
Q ss_pred HhcccccCccCCCcEEEEEecCCCCccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhhcccccCHHHHHHHHhhcCC
Q 002386 696 EYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDG 775 (929)
Q Consensus 696 ~~~~~~~~~~~~~~VivIattn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~d~~l~~LA~~teG 775 (929)
+... ++++|.+|+.++.+.+.++| |+. .++|++|+.++..++|... .+ ++++....++..+.|
T Consensus 143 ep~~---------~~~fIL~a~~~~~llpTIrS--Rc~-~i~f~~~~~~~i~~~L~~~---~~--~~~~~a~~la~~s~G 205 (394)
T PRK07940 143 EPPP---------RTVWLLCAPSPEDVLPTIRS--RCR-HVALRTPSVEAVAEVLVRR---DG--VDPETARRAARASQG 205 (394)
T ss_pred cCCC---------CCeEEEEECChHHChHHHHh--hCe-EEECCCCCHHHHHHHHHHh---cC--CCHHHHHHHHHHcCC
Confidence 6432 24455555558899999999 775 8999999999988877632 12 456777888999999
Q ss_pred CChhhHHH
Q 002386 776 YDAYDLEI 783 (929)
Q Consensus 776 ~s~~DL~~ 783 (929)
..++.+..
T Consensus 206 ~~~~A~~l 213 (394)
T PRK07940 206 HIGRARRL 213 (394)
T ss_pred CHHHHHHH
Confidence 77755544
No 145
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.31 E-value=5e-11 Score=139.55 Aligned_cols=194 Identities=18% Similarity=0.233 Sum_probs=129.4
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccc-----------
Q 002386 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL----------- 620 (929)
Q Consensus 552 ~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~----------- 620 (929)
.+.++.|++...+.+.+.+.. ...+..+|||||+|+|||++|+.+|+.+......
T Consensus 14 ~f~diiGq~~i~~~L~~~i~~--------------~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc 79 (486)
T PRK14953 14 FFKEVIGQEIVVRILKNAVKL--------------QRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENC 79 (486)
T ss_pred cHHHccChHHHHHHHHHHHHc--------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHH
Confidence 356788888888877765421 1223458999999999999999999998631110
Q ss_pred -------eeeEEEEeccccccCchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHH
Q 002386 621 -------VAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDI 693 (929)
Q Consensus 621 -------~~~~~~V~~s~L~~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ 693 (929)
...+..++.+. ....+.++.....+-.........|+||||+|.+.. ...+.|+..
T Consensus 80 ~~i~~g~~~d~~eidaas--~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~---------------~a~naLLk~ 142 (486)
T PRK14953 80 VEIDKGSFPDLIEIDAAS--NRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTK---------------EAFNALLKT 142 (486)
T ss_pred HHHhcCCCCcEEEEeCcc--CCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCH---------------HHHHHHHHH
Confidence 01223333221 122333343222221222223456999999998741 234556666
Q ss_pred HHHhcccccCccCCCcEEEEEecCCCCccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhhcccccCHHHHHHHHhhc
Q 002386 694 MDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKC 773 (929)
Q Consensus 694 ld~~~~~~~~~~~~~~VivIattn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~d~~l~~LA~~t 773 (929)
++.... .+++|.+++..+.+++.+.+ |+. .+.|++|+.++...+++..++..++.++++.+..++..+
T Consensus 143 LEepp~---------~~v~Il~tt~~~kl~~tI~S--Rc~-~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s 210 (486)
T PRK14953 143 LEEPPP---------RTIFILCTTEYDKIPPTILS--RCQ-RFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQAS 210 (486)
T ss_pred HhcCCC---------CeEEEEEECCHHHHHHHHHH--hce-EEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 655322 25555556667788888888 765 789999999999999999999889999999999999988
Q ss_pred CCCChhhHHHHHHHHH
Q 002386 774 DGYDAYDLEILVDRTV 789 (929)
Q Consensus 774 eG~s~~DL~~Lv~~A~ 789 (929)
.| +.+++..+++.+.
T Consensus 211 ~G-~lr~al~~Ldkl~ 225 (486)
T PRK14953 211 EG-GMRDAASLLDQAS 225 (486)
T ss_pred CC-CHHHHHHHHHHHH
Confidence 76 5677777777664
No 146
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.31 E-value=7.7e-11 Score=137.13 Aligned_cols=193 Identities=21% Similarity=0.235 Sum_probs=132.2
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccc-----------
Q 002386 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL----------- 620 (929)
Q Consensus 552 ~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~----------- 620 (929)
++++++|++..++.+.+.+.. ...+..+|||||+|+|||++|+++|+.+......
T Consensus 15 ~~~diiGq~~~v~~L~~~i~~--------------~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~ 80 (451)
T PRK06305 15 TFSEILGQDAVVAVLKNALRF--------------NRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCAS 80 (451)
T ss_pred CHHHhcCcHHHHHHHHHHHHc--------------CCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHH
Confidence 466888999888877765421 1234569999999999999999999998643100
Q ss_pred --------eeeEEEEeccccccCchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHH
Q 002386 621 --------VAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVD 692 (929)
Q Consensus 621 --------~~~~~~V~~s~L~~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~ 692 (929)
...++.++.... .....++...+.+-.........|+||||+|.+.. ...+.|+.
T Consensus 81 C~~i~~~~~~d~~~i~g~~~--~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~---------------~~~n~LLk 143 (451)
T PRK06305 81 CKEISSGTSLDVLEIDGASH--RGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTK---------------EAFNSLLK 143 (451)
T ss_pred HHHHhcCCCCceEEeecccc--CCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCH---------------HHHHHHHH
Confidence 012333332211 12344444333322222334567999999998842 23456667
Q ss_pred HHHHhcccccCccCCCcEEEEEecCCCCccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhhcccccCHHHHHHHHhh
Q 002386 693 IMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASK 772 (929)
Q Consensus 693 ~ld~~~~~~~~~~~~~~VivIattn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~d~~l~~LA~~ 772 (929)
.+++... .+.+|++++....+.+.+++ |+. .++|++++.++..+.++..+++.+..++++.+..++..
T Consensus 144 ~lEep~~---------~~~~Il~t~~~~kl~~tI~s--Rc~-~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~ 211 (451)
T PRK06305 144 TLEEPPQ---------HVKFFLATTEIHKIPGTILS--RCQ-KMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARA 211 (451)
T ss_pred HhhcCCC---------CceEEEEeCChHhcchHHHH--hce-EEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 7766432 35666677777888888988 776 78999999999999999988888888999999999998
Q ss_pred cCCCChhhHHHHHHHH
Q 002386 773 CDGYDAYDLEILVDRT 788 (929)
Q Consensus 773 teG~s~~DL~~Lv~~A 788 (929)
+.| +.+++..+++..
T Consensus 212 s~g-dlr~a~~~Lekl 226 (451)
T PRK06305 212 AQG-SLRDAESLYDYV 226 (451)
T ss_pred cCC-CHHHHHHHHHHH
Confidence 876 555665555554
No 147
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.30 E-value=2.2e-11 Score=141.61 Aligned_cols=178 Identities=17% Similarity=0.281 Sum_probs=121.5
Q ss_pred ceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccccccCchhhHHH---HHHHHHHHHHhcCCcEEEEcccccc
Q 002386 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQ---ALSNFISEALDHAPSIVIFDNLDSI 667 (929)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~~~~~~~~~~---~l~~~f~~a~~~~PsVL~LDEiD~L 667 (929)
.+++|||++|+|||+|++++++++..... ...++|+++.++.......... .+...... .....+|+|||++.+
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~-~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~--~~~~dvLiIDDiq~l 218 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFS-DLKVSYMSGDEFARKAVDILQKTHKEIEQFKNE--ICQNDVLIIDDVQFL 218 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCC-CCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHHH--hccCCEEEEeccccc
Confidence 35999999999999999999998753221 1567789888776544443332 12222111 245779999999987
Q ss_pred ccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCCCcEEEEEecCCCCc---cccccccCCCcc--eEeeCCCCc
Q 002386 668 ISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEK---IPQSLTSSGRFD--FHVQLPAPA 742 (929)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~VivIattn~~~~---L~~~L~~~~Rf~--~~i~l~~Pd 742 (929)
.+ .......+...|....+ .. ..+++++...+.. +++.|.+ ||. ..+.+.+|+
T Consensus 219 ~~---------k~~~~e~lf~l~N~~~~----~~-------k~iIltsd~~P~~l~~l~~rL~S--R~~~Gl~~~L~~pd 276 (450)
T PRK14087 219 SY---------KEKTNEIFFTIFNNFIE----ND-------KQLFFSSDKSPELLNGFDNRLIT--RFNMGLSIAIQKLD 276 (450)
T ss_pred cC---------CHHHHHHHHHHHHHHHH----cC-------CcEEEECCCCHHHHhhccHHHHH--HHhCCceeccCCcC
Confidence 52 11112234444433332 21 1244444344443 5678888 774 788999999
Q ss_pred HHHHHHHHHHHHhhccc--ccCHHHHHHHHhhcCCCChhhHHHHHHHHHHHHhh
Q 002386 743 ASERKAILEHEIQRRSL--ECSDEILLDVASKCDGYDAYDLEILVDRTVHAAVG 794 (929)
Q Consensus 743 ~~eR~~IL~~~l~~~~~--~~~d~~l~~LA~~teG~s~~DL~~Lv~~A~~~a~~ 794 (929)
.++|.+|+++.++..++ .++++.+..|+..+.| +++.+..++.++...+..
T Consensus 277 ~e~r~~iL~~~~~~~gl~~~l~~evl~~Ia~~~~g-d~R~L~gaL~~l~~~a~~ 329 (450)
T PRK14087 277 NKTATAIIKKEIKNQNIKQEVTEEAINFISNYYSD-DVRKIKGSVSRLNFWSQQ 329 (450)
T ss_pred HHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHccCC-CHHHHHHHHHHHHHHHhc
Confidence 99999999999987664 6899999999999887 788899999888755544
No 148
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.30 E-value=7.1e-11 Score=145.86 Aligned_cols=213 Identities=15% Similarity=0.208 Sum_probs=143.2
Q ss_pred ccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEecccccc
Q 002386 555 SLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSL 634 (929)
Q Consensus 555 ~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~~ 634 (929)
.+.|++.+++.+.+.+....... .. ...+.+.+||+||+|||||++|+++|+.++ ..++.++++++..
T Consensus 455 ~v~GQ~~ai~~l~~~i~~~~~g~-----~~-~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~------~~~~~~d~se~~~ 522 (731)
T TIGR02639 455 KIFGQDEAIDSLVSSIKRSRAGL-----GN-PNKPVGSFLFTGPTGVGKTELAKQLAEALG------VHLERFDMSEYME 522 (731)
T ss_pred ceeCcHHHHHHHHHHHHHHhcCC-----CC-CCCCceeEEEECCCCccHHHHHHHHHHHhc------CCeEEEeCchhhh
Confidence 56788888888887664321100 00 012334589999999999999999999986 6678888876543
Q ss_pred ---------CchhhHHH-HHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccc--cc
Q 002386 635 ---------EKGPIIRQ-ALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEK--RK 702 (929)
Q Consensus 635 ---------~~~~~~~~-~l~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~--~~ 702 (929)
...+.... ....+....+....+||+|||+|.+.+ .+.+.|+..|+...-. ..
T Consensus 523 ~~~~~~lig~~~gyvg~~~~~~l~~~~~~~p~~VvllDEieka~~---------------~~~~~Ll~~ld~g~~~d~~g 587 (731)
T TIGR02639 523 KHTVSRLIGAPPGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKAHP---------------DIYNILLQVMDYATLTDNNG 587 (731)
T ss_pred cccHHHHhcCCCCCcccchhhHHHHHHHhCCCeEEEEechhhcCH---------------HHHHHHHHhhccCeeecCCC
Confidence 11111100 011122223335568999999998753 5677788888754211 11
Q ss_pred CccCCCcEEEEEecCCCC-------------------------ccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhh-
Q 002386 703 SSCGIGPIAFVASAQSLE-------------------------KIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQR- 756 (929)
Q Consensus 703 ~~~~~~~VivIattn~~~-------------------------~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~- 756 (929)
......+.++|+|+|... .+.|.|.. ||+.+|.|.+.+.++..+|++..+.+
T Consensus 588 ~~vd~~~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~--Rid~Vi~F~pLs~e~l~~Iv~~~L~~l 665 (731)
T TIGR02639 588 RKADFRNVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRN--RLDAIIHFNPLSEEVLEKIVQKFVDEL 665 (731)
T ss_pred cccCCCCCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHh--cCCeEEEcCCCCHHHHHHHHHHHHHHH
Confidence 122334688999987631 13556666 99999999999999999999987763
Q ss_pred ------c--ccccCHHHHHHHHhh--cCCCChhhHHHHHHHHHHHHhhcc
Q 002386 757 ------R--SLECSDEILLDVASK--CDGYDAYDLEILVDRTVHAAVGRY 796 (929)
Q Consensus 757 ------~--~~~~~d~~l~~LA~~--teG~s~~DL~~Lv~~A~~~a~~r~ 796 (929)
. .+.++++.++.|+.. ...|.++.|+.++++.+...+.+.
T Consensus 666 ~~~l~~~~~~l~i~~~a~~~La~~~~~~~~GaR~l~r~i~~~~~~~l~~~ 715 (731)
T TIGR02639 666 SKQLNEKNIKLELTDDAKKYLAEKGYDEEFGARPLARVIQEEIKKPLSDE 715 (731)
T ss_pred HHHHHhCCCeEEeCHHHHHHHHHhCCCcccCchHHHHHHHHHhHHHHHHH
Confidence 1 356788999999985 356778889998888877776654
No 149
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.29 E-value=1.6e-11 Score=141.98 Aligned_cols=195 Identities=17% Similarity=0.235 Sum_probs=146.1
Q ss_pred ccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccce-----------
Q 002386 553 VSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLV----------- 621 (929)
Q Consensus 553 ~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~----------- 621 (929)
|.++.|++.+...+.+.+.. .....++||+||.|+||||+||.+|+.++......
T Consensus 15 F~evvGQe~v~~~L~nal~~--------------~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck 80 (515)
T COG2812 15 FDDVVGQEHVVKTLSNALEN--------------GRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCK 80 (515)
T ss_pred HHHhcccHHHHHHHHHHHHh--------------CcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhH
Confidence 56778888887777775421 12235699999999999999999999998653110
Q ss_pred -------eeEEEEeccccccCchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHH
Q 002386 622 -------AHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIM 694 (929)
Q Consensus 622 -------~~~~~V~~s~L~~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~l 694 (929)
..++++|. .....+++++.....+..........|.+|||+|+|. ....+.|+..+
T Consensus 81 ~I~~g~~~DviEiDa--ASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS---------------~~afNALLKTL 143 (515)
T COG2812 81 EINEGSLIDVIEIDA--ASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLS---------------KQAFNALLKTL 143 (515)
T ss_pred hhhcCCcccchhhhh--hhccChHHHHHHHHHhccCCccccceEEEEecHHhhh---------------HHHHHHHhccc
Confidence 11111111 1133456666666666555555667799999999985 24555666666
Q ss_pred HHhcccccCccCCCcEEEEEecCCCCccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhhcccccCHHHHHHHHhhcC
Q 002386 695 DEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCD 774 (929)
Q Consensus 695 d~~~~~~~~~~~~~~VivIattn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~d~~l~~LA~~te 774 (929)
++-. ..|.||.+|..++.+|+.+++ |.. ++.|...+.++....|...+.+.++.++++.+..+|...+
T Consensus 144 EEPP---------~hV~FIlATTe~~Kip~TIlS--Rcq-~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~ 211 (515)
T COG2812 144 EEPP---------SHVKFILATTEPQKIPNTILS--RCQ-RFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAE 211 (515)
T ss_pred ccCc---------cCeEEEEecCCcCcCchhhhh--ccc-cccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcC
Confidence 5532 258999999999999999999 666 6789999999999999999999999999999999999988
Q ss_pred CCChhhHHHHHHHHHHH
Q 002386 775 GYDAYDLEILVDRTVHA 791 (929)
Q Consensus 775 G~s~~DL~~Lv~~A~~~ 791 (929)
| +.+|...+++.+...
T Consensus 212 G-s~RDalslLDq~i~~ 227 (515)
T COG2812 212 G-SLRDALSLLDQAIAF 227 (515)
T ss_pred C-ChhhHHHHHHHHHHc
Confidence 8 788998888888654
No 150
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.29 E-value=5.6e-11 Score=135.35 Aligned_cols=198 Identities=21% Similarity=0.258 Sum_probs=129.6
Q ss_pred CceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEecccccc-Cchhh-HHHHHHHHHHHH----HhcCCcEEEEcc
Q 002386 590 PGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSL-EKGPI-IRQALSNFISEA----LDHAPSIVIFDN 663 (929)
Q Consensus 590 ~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~~-~~~~~-~~~~l~~~f~~a----~~~~PsVL~LDE 663 (929)
.+++||+||||||||++|+++|+.++ .++..+++..+.. .+.+. .+..+...+..+ ....++||||||
T Consensus 116 ~~~iLL~GP~GsGKT~lAraLA~~l~------~pf~~~da~~L~~~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDE 189 (413)
T TIGR00382 116 KSNILLIGPTGSGKTLLAQTLARILN------VPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDE 189 (413)
T ss_pred CceEEEECCCCcCHHHHHHHHHHhcC------CCeEEechhhccccccccccHHHHHHHHHHhCcccHHhcccceEEecc
Confidence 46899999999999999999999987 6777788877652 23333 344444444432 234678999999
Q ss_pred ccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcc----cccCccCCCcEEEEEecCCC--------------------
Q 002386 664 LDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGE----KRKSSCGIGPIAFVASAQSL-------------------- 719 (929)
Q Consensus 664 iD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~----~~~~~~~~~~VivIattn~~-------------------- 719 (929)
+|.+.+.+..+... .......+.+.|+..|++... .........+.++|.|+|-.
T Consensus 190 Idkl~~~~~~~s~~-~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~ 268 (413)
T TIGR00382 190 IDKISRKSENPSIT-RDVSGEGVQQALLKIIEGTVANVPPQGGRKHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGK 268 (413)
T ss_pred cchhchhhcccccc-ccccchhHHHHHHHHhhccceecccCCCccccCCCeEEEEcCCceeeecccccChHHHHHHHhhh
Confidence 99997532211111 001112456667777764321 11112223456677776640
Q ss_pred -------C-----------------------ccccccccCCCcceEeeCCCCcHHHHHHHHHHH----Hh---------h
Q 002386 720 -------E-----------------------KIPQSLTSSGRFDFHVQLPAPAASERKAILEHE----IQ---------R 756 (929)
Q Consensus 720 -------~-----------------------~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~----l~---------~ 756 (929)
+ .+.|.|. +|++.++.|.+.+.+++.+|+... ++ .
T Consensus 269 ~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEfl--gRld~Iv~f~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~g 346 (413)
T TIGR00382 269 SSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFI--GRLPVIATLEKLDEEALIAILTKPKNALVKQYQALFKMDN 346 (413)
T ss_pred ccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHh--CCCCeEeecCCCCHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 0 0123333 499999999999999999998752 22 1
Q ss_pred cccccCHHHHHHHHhhc--CCCChhhHHHHHHHHHHHHhhcc
Q 002386 757 RSLECSDEILLDVASKC--DGYDAYDLEILVDRTVHAAVGRY 796 (929)
Q Consensus 757 ~~~~~~d~~l~~LA~~t--eG~s~~DL~~Lv~~A~~~a~~r~ 796 (929)
..+.++++.++.|++.+ ..+.+|.|+.++++.+...+.+.
T Consensus 347 i~L~~t~~a~~~Ia~~~~~~~~GAR~Lr~iie~~l~~~m~e~ 388 (413)
T TIGR00382 347 VELDFEEEALKAIAKKALERKTGARGLRSIVEGLLLDVMFDL 388 (413)
T ss_pred eEEEECHHHHHHHHHhCCCCCCCchHHHHHHHHhhHHHHhhC
Confidence 23457899999999874 56778999999999988887764
No 151
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=9.5e-11 Score=132.33 Aligned_cols=220 Identities=20% Similarity=0.255 Sum_probs=143.7
Q ss_pred cccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccccccC
Q 002386 556 LSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLE 635 (929)
Q Consensus 556 l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~~~ 635 (929)
+.+.+..++++...+...+. ...|.++++||+||||||.+++.+++++...... ..++||||..+.+.
T Consensus 19 l~~Re~ei~~l~~~l~~~~~-----------~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~-~~~~yINc~~~~t~ 86 (366)
T COG1474 19 LPHREEEINQLASFLAPALR-----------GERPSNIIIYGPTGTGKTATVKFVMEELEESSAN-VEVVYINCLELRTP 86 (366)
T ss_pred ccccHHHHHHHHHHHHHHhc-----------CCCCccEEEECCCCCCHhHHHHHHHHHHHhhhcc-CceEEEeeeeCCCH
Confidence 55688888888887765544 3344569999999999999999999999754321 22899999765432
Q ss_pred ch----------------hhHHHHHHHHHHHHHh-cCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhc
Q 002386 636 KG----------------PIIRQALSNFISEALD-HAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG 698 (929)
Q Consensus 636 ~~----------------~~~~~~l~~~f~~a~~-~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~ 698 (929)
.. -...+.+..+++.... ....|++|||+|.|.... . .++..|.+..+..
T Consensus 87 ~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~---~---------~~LY~L~r~~~~~- 153 (366)
T COG1474 87 YQVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKD---G---------EVLYSLLRAPGEN- 153 (366)
T ss_pred HHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhcccc---c---------hHHHHHHhhcccc-
Confidence 10 0011222222222222 356699999999997311 0 2333344433332
Q ss_pred ccccCccCCCcEEEEEecCCCC---ccccccccCCCcc-eEeeCCCCcHHHHHHHHHHHHhh--cccccCHHHHHHHHhh
Q 002386 699 EKRKSSCGIGPIAFVASAQSLE---KIPQSLTSSGRFD-FHVQLPAPAASERKAILEHEIQR--RSLECSDEILLDVASK 772 (929)
Q Consensus 699 ~~~~~~~~~~~VivIattn~~~---~L~~~L~~~~Rf~-~~i~l~~Pd~~eR~~IL~~~l~~--~~~~~~d~~l~~LA~~ 772 (929)
...+.+|+.+|... .+++.+.+ +|. .+|.|++++.+|..+|++...+. ....+++..++.+|..
T Consensus 154 --------~~~v~vi~i~n~~~~~~~ld~rv~s--~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~ 223 (366)
T COG1474 154 --------KVKVSIIAVSNDDKFLDYLDPRVKS--SLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAAL 223 (366)
T ss_pred --------ceeEEEEEEeccHHHHHHhhhhhhh--ccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHH
Confidence 12588999988754 67888888 443 45899999999999999988774 2334677777666544
Q ss_pred c---CCCChhhHHHHHHHHHHHHhhccccCCcccccccccccccccccccccc
Q 002386 773 C---DGYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHE 822 (929)
Q Consensus 773 t---eG~s~~DL~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~lt~edf~~al~~ 822 (929)
. .| +++-.-.++++|...|-.+ +...++.++..+|.+.
T Consensus 224 ~a~~~G-DAR~aidilr~A~eiAe~~-----------~~~~v~~~~v~~a~~~ 264 (366)
T COG1474 224 VAAESG-DARKAIDILRRAGEIAERE-----------GSRKVSEDHVREAQEE 264 (366)
T ss_pred HHHcCc-cHHHHHHHHHHHHHHHHhh-----------CCCCcCHHHHHHHHHH
Confidence 3 34 4555556788888877765 3355677776666443
No 152
>PRK06620 hypothetical protein; Validated
Probab=99.27 E-value=4.8e-11 Score=125.52 Aligned_cols=146 Identities=17% Similarity=0.184 Sum_probs=101.5
Q ss_pred ceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccccccCchhhHHHHHHHHHHHHHhcCCcEEEEccccccccC
Q 002386 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISS 670 (929)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~ 670 (929)
..++||||||||||+|++++++..+ .. ++..... . . +. .....+|+|||+|.+-
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~------~~--~~~~~~~-~------~----~~-----~~~~d~lliDdi~~~~-- 98 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSN------AY--IIKDIFF-N------E----EI-----LEKYNAFIIEDIENWQ-- 98 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccC------CE--Ecchhhh-c------h----hH-----HhcCCEEEEeccccch--
Confidence 5699999999999999999988754 21 2221110 0 0 11 1234699999998541
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCCCcEEEEEecCCCCc--cccccccCCCcc--eEeeCCCCcHHHH
Q 002386 671 SSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEK--IPQSLTSSGRFD--FHVQLPAPAASER 746 (929)
Q Consensus 671 ~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~VivIattn~~~~--L~~~L~~~~Rf~--~~i~l~~Pd~~eR 746 (929)
...+...+..+.+. . ..++++++..+.. + +.|++ |+. .++.+.+|+.+.+
T Consensus 99 ------------~~~lf~l~N~~~e~----g-------~~ilits~~~p~~l~l-~~L~S--Rl~~gl~~~l~~pd~~~~ 152 (214)
T PRK06620 99 ------------EPALLHIFNIINEK----Q-------KYLLLTSSDKSRNFTL-PDLSS--RIKSVLSILLNSPDDELI 152 (214)
T ss_pred ------------HHHHHHHHHHHHhc----C-------CEEEEEcCCCccccch-HHHHH--HHhCCceEeeCCCCHHHH
Confidence 02344433333322 1 2566666655554 5 77888 665 5789999999999
Q ss_pred HHHHHHHHhhcccccCHHHHHHHHhhcCCCChhhHHHHHHHHH
Q 002386 747 KAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTV 789 (929)
Q Consensus 747 ~~IL~~~l~~~~~~~~d~~l~~LA~~teG~s~~DL~~Lv~~A~ 789 (929)
.+++++.+..+++.++++.++.|+....| +.+.+..++++..
T Consensus 153 ~~~l~k~~~~~~l~l~~ev~~~L~~~~~~-d~r~l~~~l~~l~ 194 (214)
T PRK06620 153 KILIFKHFSISSVTISRQIIDFLLVNLPR-EYSKIIEILENIN 194 (214)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHH
Confidence 99999999888899999999999999877 6677777777754
No 153
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.26 E-value=1.3e-10 Score=130.62 Aligned_cols=136 Identities=20% Similarity=0.283 Sum_probs=88.5
Q ss_pred CCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccc-ccCccCCCcEEEEEecC----CCCccccccccC
Q 002386 655 APSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEK-RKSSCGIGPIAFVASAQ----SLEKIPQSLTSS 729 (929)
Q Consensus 655 ~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~-~~~~~~~~~VivIattn----~~~~L~~~L~~~ 729 (929)
+-.|+||||+|.++...... ...-....+.+.|+.++++-.-. ........+++||++.. .+.+|=|.|..
T Consensus 247 ~~GIVfiDEiDKIa~~~~~~---~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~G- 322 (441)
T TIGR00390 247 QSGIIFIDEIDKIAKKGESS---GADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQG- 322 (441)
T ss_pred cCCEEEEEchhhhcccCCCC---CCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHhC-
Confidence 34699999999998533111 11122235667777777763211 11122223688888743 34455566665
Q ss_pred CCcceEeeCCCCcHHHHHHHHH----HHH-------hh--cccccCHHHHHHHHhhc-------CCCChhhHHHHHHHHH
Q 002386 730 GRFDFHVQLPAPAASERKAILE----HEI-------QR--RSLECSDEILLDVASKC-------DGYDAYDLEILVDRTV 789 (929)
Q Consensus 730 ~Rf~~~i~l~~Pd~~eR~~IL~----~~l-------~~--~~~~~~d~~l~~LA~~t-------eG~s~~DL~~Lv~~A~ 789 (929)
||...+.+.+++.++..+||. .++ .. ..+.++++.+..+|... ++.-++-|..++++..
T Consensus 323 -R~Pi~v~L~~L~~edL~rILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtilE~~l 401 (441)
T TIGR00390 323 -RFPIRVELQALTTDDFERILTEPKNSLIKQYKALMKTEGVNIEFSDEAIKRIAELAYNVNEKTENIGARRLHTVLERLL 401 (441)
T ss_pred -ccceEEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEeHHHHHHHHHHHHHhcccccccchhhHHHHHHHHH
Confidence 999999999999999999983 222 22 23557888888887764 5777788888888887
Q ss_pred HHHhhc
Q 002386 790 HAAVGR 795 (929)
Q Consensus 790 ~~a~~r 795 (929)
......
T Consensus 402 ~d~~fe 407 (441)
T TIGR00390 402 EDISFE 407 (441)
T ss_pred HHHHhc
Confidence 766655
No 154
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.25 E-value=1.7e-10 Score=128.88 Aligned_cols=212 Identities=18% Similarity=0.223 Sum_probs=134.6
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccc
Q 002386 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSR 631 (929)
Q Consensus 552 ~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~ 631 (929)
++.++.|.+.+++.+...+.. ....+++|+||||||||++++++++++..... ...++.+++++
T Consensus 15 ~~~~~~g~~~~~~~l~~~i~~---------------~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~-~~~~i~~~~~~ 78 (319)
T PRK00440 15 TLDEIVGQEEIVERLKSYVKE---------------KNMPHLLFAGPPGTGKTTAALALARELYGEDW-RENFLELNASD 78 (319)
T ss_pred cHHHhcCcHHHHHHHHHHHhC---------------CCCCeEEEECCCCCCHHHHHHHHHHHHcCCcc-ccceEEecccc
Confidence 456777888877777664421 11135999999999999999999999853321 23445555443
Q ss_pred cccCchhhHHHHHHHHHHHH-Hh-cCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCCCc
Q 002386 632 LSLEKGPIIRQALSNFISEA-LD-HAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (929)
Q Consensus 632 L~~~~~~~~~~~l~~~f~~a-~~-~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (929)
..+ .......+..+.... .. ..+.+|+|||+|.+.. .....|...++.... .
T Consensus 79 ~~~--~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~---------------~~~~~L~~~le~~~~---------~ 132 (319)
T PRK00440 79 ERG--IDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTS---------------DAQQALRRTMEMYSQ---------N 132 (319)
T ss_pred ccc--hHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCH---------------HHHHHHHHHHhcCCC---------C
Confidence 221 222223333322211 11 2346999999998842 123345555554332 2
Q ss_pred EEEEEecCCCCccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhhcccccCHHHHHHHHhhcCCCChhhHHHHHHHHH
Q 002386 710 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTV 789 (929)
Q Consensus 710 VivIattn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~d~~l~~LA~~teG~s~~DL~~Lv~~A~ 789 (929)
..+|.+++....+.+.+.+ |+. .++|++++.++...+++..+.+.+..++++.+..++..+.| +.+.+...++.+.
T Consensus 133 ~~lIl~~~~~~~l~~~l~s--r~~-~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~g-d~r~~~~~l~~~~ 208 (319)
T PRK00440 133 TRFILSCNYSSKIIDPIQS--RCA-VFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEG-DMRKAINALQAAA 208 (319)
T ss_pred CeEEEEeCCccccchhHHH--Hhh-eeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 3455566766777777877 766 68999999999999999999988889999999999998776 4444444444433
Q ss_pred HHHhhccccCCccccccccccccccccccccccccc
Q 002386 790 HAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLP 825 (929)
Q Consensus 790 ~~a~~r~~~~~~~~~~~~~~~lt~edf~~al~~~~P 825 (929)
.. ...++.+++.++.....+
T Consensus 209 ~~----------------~~~it~~~v~~~~~~~~~ 228 (319)
T PRK00440 209 AT----------------GKEVTEEAVYKITGTARP 228 (319)
T ss_pred Hc----------------CCCCCHHHHHHHhCCCCH
Confidence 21 024677776666554433
No 155
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.25 E-value=1.8e-10 Score=138.43 Aligned_cols=192 Identities=20% Similarity=0.225 Sum_probs=127.9
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccc-----------
Q 002386 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL----------- 620 (929)
Q Consensus 552 ~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~----------- 620 (929)
.++++.|++..++.+.+.+.. ...+.++||+||+|+|||++|+++|+.+......
T Consensus 14 ~f~~liGq~~i~~~L~~~l~~--------------~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~ 79 (620)
T PRK14948 14 RFDELVGQEAIATTLKNALIS--------------NRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCE 79 (620)
T ss_pred cHhhccChHHHHHHHHHHHHc--------------CCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccH
Confidence 356778888877777664421 1123469999999999999999999998753110
Q ss_pred ---------eeeEEEEeccccccCchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHH
Q 002386 621 ---------VAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLV 691 (929)
Q Consensus 621 ---------~~~~~~V~~s~L~~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~ 691 (929)
...+++++.. ....+..++..+..+-.........|+||||+|.|-. ...+.|+
T Consensus 80 ~C~~i~~g~h~D~~ei~~~--~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~---------------~a~naLL 142 (620)
T PRK14948 80 LCRAIAAGNALDVIEIDAA--SNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLST---------------AAFNALL 142 (620)
T ss_pred HHHHHhcCCCccEEEEecc--ccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCH---------------HHHHHHH
Confidence 0123333322 1222344444443322222223346999999998841 3455667
Q ss_pred HHHHHhcccccCccCCCcEEEEEecCCCCccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhhcccccCHHHHHHHHh
Q 002386 692 DIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVAS 771 (929)
Q Consensus 692 ~~ld~~~~~~~~~~~~~~VivIattn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~d~~l~~LA~ 771 (929)
..+++... .+++|++|+.++.+.+.+++ |+. .++|..++.++....+...+.+.+..++++.+..++.
T Consensus 143 K~LEePp~---------~tvfIL~t~~~~~llpTIrS--Rc~-~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~ 210 (620)
T PRK14948 143 KTLEEPPP---------RVVFVLATTDPQRVLPTIIS--RCQ-RFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQ 210 (620)
T ss_pred HHHhcCCc---------CeEEEEEeCChhhhhHHHHh--hee-EEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 77775432 36677777777888888888 765 7899999999988888888887788888899999999
Q ss_pred hcCCCChhhHHHHHHH
Q 002386 772 KCDGYDAYDLEILVDR 787 (929)
Q Consensus 772 ~teG~s~~DL~~Lv~~ 787 (929)
.+.|. .+++..+++.
T Consensus 211 ~s~G~-lr~A~~lLek 225 (620)
T PRK14948 211 RSQGG-LRDAESLLDQ 225 (620)
T ss_pred HcCCC-HHHHHHHHHH
Confidence 88874 4555555554
No 156
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.25 E-value=8.2e-11 Score=132.47 Aligned_cols=179 Identities=19% Similarity=0.281 Sum_probs=132.3
Q ss_pred ceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccccccCchhhHHHHHHHHHHHHHhcCCcEEEEccccccccC
Q 002386 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISS 670 (929)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~ 670 (929)
..++|||+.|+|||+|++|++.+...... ...++|+....+....+..++..-.+-|.+-+ .-.+|+|||++.+.+.
T Consensus 114 nplfi~G~~GlGKTHLl~Aign~~~~~~~-~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~gk 190 (408)
T COG0593 114 NPLFIYGGVGLGKTHLLQAIGNEALANGP-NARVVYLTSEDFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAGK 190 (408)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHhhCC-CceEEeccHHHHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcCC
Confidence 45999999999999999999999865433 25688888877766666555543334455555 5569999999998641
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCCCcEEEEEecCCCCcc---ccccccCCCcc--eEeeCCCCcHHH
Q 002386 671 SSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKI---PQSLTSSGRFD--FHVQLPAPAASE 745 (929)
Q Consensus 671 ~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~VivIattn~~~~L---~~~L~~~~Rf~--~~i~l~~Pd~~e 745 (929)
......+.+.|..+.+.- .-+++++...|..+ .+.|++ ||. ..+.+.+||.+.
T Consensus 191 ---------~~~qeefFh~FN~l~~~~-----------kqIvltsdr~P~~l~~~~~rL~S--R~~~Gl~~~I~~Pd~e~ 248 (408)
T COG0593 191 ---------ERTQEEFFHTFNALLENG-----------KQIVLTSDRPPKELNGLEDRLRS--RLEWGLVVEIEPPDDET 248 (408)
T ss_pred ---------hhHHHHHHHHHHHHHhcC-----------CEEEEEcCCCchhhccccHHHHH--HHhceeEEeeCCCCHHH
Confidence 112345666665554431 23555555566655 488888 775 678999999999
Q ss_pred HHHHHHHHHhhcccccCHHHHHHHHhhcCCCChhhHHHHHHHHHHHHhhc
Q 002386 746 RKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAAVGR 795 (929)
Q Consensus 746 R~~IL~~~l~~~~~~~~d~~l~~LA~~teG~s~~DL~~Lv~~A~~~a~~r 795 (929)
|..||+......++.++++++..+|..... +.++|+.++++....+...
T Consensus 249 r~aiL~kka~~~~~~i~~ev~~~la~~~~~-nvReLegaL~~l~~~a~~~ 297 (408)
T COG0593 249 RLAILRKKAEDRGIEIPDEVLEFLAKRLDR-NVRELEGALNRLDAFALFT 297 (408)
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHhhc-cHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999998766 6788888888877666543
No 157
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.24 E-value=2.3e-10 Score=136.74 Aligned_cols=194 Identities=17% Similarity=0.229 Sum_probs=129.9
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccc-----------
Q 002386 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL----------- 620 (929)
Q Consensus 552 ~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~----------- 620 (929)
++.++.|++..++.+.+.+.. ...+.++||+||+||||||+|+.+|+.+......
T Consensus 14 ~f~eivGQe~i~~~L~~~i~~--------------~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~ 79 (620)
T PRK14954 14 KFADITAQEHITHTIQNSLRM--------------DRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTE 79 (620)
T ss_pred CHHHhcCcHHHHHHHHHHHHc--------------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCC
Confidence 456788888888877664321 1223569999999999999999999999752210
Q ss_pred ---------------eeeEEEEeccccccCchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHH
Q 002386 621 ---------------VAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIA 685 (929)
Q Consensus 621 ---------------~~~~~~V~~s~L~~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~ 685 (929)
...+..++... ....++++.....+-.........|+||||+|.+.. .
T Consensus 80 ~Cg~C~sC~~~~~g~~~n~~~~d~~s--~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~---------------~ 142 (620)
T PRK14954 80 PCGECESCRDFDAGTSLNISEFDAAS--NNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLST---------------A 142 (620)
T ss_pred CCccCHHHHHHhccCCCCeEEecccc--cCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCH---------------H
Confidence 01222232211 112444554433332222333456999999998841 2
Q ss_pred HHHHHHHHHHHhcccccCccCCCcEEEEEecCCCCccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhhcccccCHHH
Q 002386 686 LTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEI 765 (929)
Q Consensus 686 l~~~L~~~ld~~~~~~~~~~~~~~VivIattn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~d~~ 765 (929)
-.+.|+..+++... .+++|.+++....+.+.+++ |.. .++|.+++.++....++..+...+..++++.
T Consensus 143 a~naLLK~LEePp~---------~tv~IL~t~~~~kLl~TI~S--Rc~-~vef~~l~~~ei~~~L~~i~~~egi~I~~ea 210 (620)
T PRK14954 143 AFNAFLKTLEEPPP---------HAIFIFATTELHKIPATIAS--RCQ-RFNFKRIPLDEIQSQLQMICRAEGIQIDADA 210 (620)
T ss_pred HHHHHHHHHhCCCC---------CeEEEEEeCChhhhhHHHHh--hce-EEecCCCCHHHHHHHHHHHHHHcCCCCCHHH
Confidence 34567777776432 25555556667888888888 654 8899999999999999988888888899999
Q ss_pred HHHHHhhcCCCChhhHHHHHHHHH
Q 002386 766 LLDVASKCDGYDAYDLEILVDRTV 789 (929)
Q Consensus 766 l~~LA~~teG~s~~DL~~Lv~~A~ 789 (929)
+..++..+.| +.+++...++...
T Consensus 211 l~~La~~s~G-dlr~al~eLeKL~ 233 (620)
T PRK14954 211 LQLIARKAQG-SMRDAQSILDQVI 233 (620)
T ss_pred HHHHHHHhCC-CHHHHHHHHHHHH
Confidence 9999999887 5555555555543
No 158
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.24 E-value=1.6e-10 Score=132.97 Aligned_cols=194 Identities=16% Similarity=0.209 Sum_probs=126.0
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccc-----------
Q 002386 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL----------- 620 (929)
Q Consensus 552 ~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~----------- 620 (929)
+++++.|++.+++.+...+.. ...+..+||+||+|+|||++|+++|+.+......
T Consensus 14 ~~~eiiGq~~~~~~L~~~~~~--------------~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~ 79 (397)
T PRK14955 14 KFADITAQEHITRTIQNSLRM--------------GRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTE 79 (397)
T ss_pred cHhhccChHHHHHHHHHHHHh--------------CCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCC
Confidence 466788888887766654321 1223569999999999999999999999642100
Q ss_pred ---------------eeeEEEEeccccccCchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHH
Q 002386 621 ---------------VAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIA 685 (929)
Q Consensus 621 ---------------~~~~~~V~~s~L~~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~ 685 (929)
...+..++.... ...+.++.....+-.........|+||||+|.+.. .
T Consensus 80 ~c~~c~~c~~~~~~~~~n~~~~~~~~~--~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~---------------~ 142 (397)
T PRK14955 80 PCGECESCRDFDAGTSLNISEFDAASN--NSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSI---------------A 142 (397)
T ss_pred CCCCCHHHHHHhcCCCCCeEeeccccc--CCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCH---------------H
Confidence 011222222111 11333333322221111222345999999998841 2
Q ss_pred HHHHHHHHHHHhcccccCccCCCcEEEEEecCCCCccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhhcccccCHHH
Q 002386 686 LTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEI 765 (929)
Q Consensus 686 l~~~L~~~ld~~~~~~~~~~~~~~VivIattn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~d~~ 765 (929)
-.+.|+..+++... ..++|.+++....+.+.+++ |.. .++|.+++.++..+.++..++..+..++++.
T Consensus 143 ~~~~LLk~LEep~~---------~t~~Il~t~~~~kl~~tl~s--R~~-~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~a 210 (397)
T PRK14955 143 AFNAFLKTLEEPPP---------HAIFIFATTELHKIPATIAS--RCQ-RFNFKRIPLEEIQQQLQGICEAEGISVDADA 210 (397)
T ss_pred HHHHHHHHHhcCCC---------CeEEEEEeCChHHhHHHHHH--HHH-HhhcCCCCHHHHHHHHHHHHHHcCCCCCHHH
Confidence 23445555554332 24555555666788888887 666 7899999999999999998888888899999
Q ss_pred HHHHHhhcCCCChhhHHHHHHHHH
Q 002386 766 LLDVASKCDGYDAYDLEILVDRTV 789 (929)
Q Consensus 766 l~~LA~~teG~s~~DL~~Lv~~A~ 789 (929)
+..++..+.| +.+.+...++++.
T Consensus 211 l~~l~~~s~g-~lr~a~~~L~kl~ 233 (397)
T PRK14955 211 LQLIGRKAQG-SMRDAQSILDQVI 233 (397)
T ss_pred HHHHHHHcCC-CHHHHHHHHHHHH
Confidence 9999999877 5566666666554
No 159
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=5.5e-12 Score=147.27 Aligned_cols=89 Identities=27% Similarity=0.562 Sum_probs=85.3
Q ss_pred CCCccCCCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHcCCceEEEecccccccc
Q 002386 839 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKY 918 (929)
Q Consensus 839 ~~~~w~dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~glnfIsVkg~ELl~ky 918 (929)
..+.+.|+.|.+++|+.+.|.++ .++.|..|...|.+.|.|+||+||||||||+||+|+|.|.+.+|+++.|++++..|
T Consensus 145 ~~v~F~DVAG~dEakeel~EiVd-fLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemf 223 (596)
T COG0465 145 VKVTFADVAGVDEAKEELSELVD-FLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMF 223 (596)
T ss_pred cCcChhhhcCcHHHHHHHHHHHH-HHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhh
Confidence 35899999999999999999998 67999999999999999999999999999999999999999999999999999999
Q ss_pred cChhhHHHhh
Q 002386 919 IGASEQAVRR 928 (929)
Q Consensus 919 IG~SEq~VRd 928 (929)
||--...|||
T Consensus 224 VGvGAsRVRd 233 (596)
T COG0465 224 VGVGASRVRD 233 (596)
T ss_pred cCCCcHHHHH
Confidence 9999999997
No 160
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.23 E-value=1.2e-10 Score=130.85 Aligned_cols=135 Identities=20% Similarity=0.287 Sum_probs=88.7
Q ss_pred CcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccc-ccCccCCCcEEEEEecC----CCCccccccccCC
Q 002386 656 PSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEK-RKSSCGIGPIAFVASAQ----SLEKIPQSLTSSG 730 (929)
Q Consensus 656 PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~-~~~~~~~~~VivIattn----~~~~L~~~L~~~~ 730 (929)
-.|+||||+|.|+...... ........+.+.|+.++++-.-. ........+|+||++-. .+++|=|.|..
T Consensus 250 ~GIVfiDEiDKIa~~~~~~---~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~G-- 324 (443)
T PRK05201 250 NGIVFIDEIDKIAARGGSS---GPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQG-- 324 (443)
T ss_pred CCEEEEEcchhhcccCCCC---CCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhC--
Confidence 4599999999998643211 11222345667777777763211 11112223688888742 34555566766
Q ss_pred CcceEeeCCCCcHHHHHHHHHH----HHh-------h--cccccCHHHHHHHHhhc-------CCCChhhHHHHHHHHHH
Q 002386 731 RFDFHVQLPAPAASERKAILEH----EIQ-------R--RSLECSDEILLDVASKC-------DGYDAYDLEILVDRTVH 790 (929)
Q Consensus 731 Rf~~~i~l~~Pd~~eR~~IL~~----~l~-------~--~~~~~~d~~l~~LA~~t-------eG~s~~DL~~Lv~~A~~ 790 (929)
||...+.+.+++.++..+||.. .++ . ..+.++++.+..+|... ++.-++-|..++++...
T Consensus 325 R~Pi~v~L~~L~~~dL~~ILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtI~E~~L~ 404 (443)
T PRK05201 325 RFPIRVELDALTEEDFVRILTEPKASLIKQYQALLATEGVTLEFTDDAIRRIAEIAYQVNEKTENIGARRLHTVMEKLLE 404 (443)
T ss_pred ccceEEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEcHHHHHHHHHHHHHhcccccccchhhHHHHHHHHHH
Confidence 9999999999999999999842 222 1 23557888888887764 46667888888888877
Q ss_pred HHhhc
Q 002386 791 AAVGR 795 (929)
Q Consensus 791 ~a~~r 795 (929)
.....
T Consensus 405 d~~Fe 409 (443)
T PRK05201 405 DISFE 409 (443)
T ss_pred HHhcc
Confidence 66654
No 161
>PRK09087 hypothetical protein; Validated
Probab=99.23 E-value=5.9e-11 Score=125.88 Aligned_cols=156 Identities=17% Similarity=0.236 Sum_probs=105.6
Q ss_pred ceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccccccCchhhHHHHHHHHHHHHHhcCCcEEEEccccccccC
Q 002386 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISS 670 (929)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~ 670 (929)
..++|+||+|||||+|++++|+..+ ..|++...+.... +.... ..+|+|||++.+.
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~~--------~~~i~~~~~~~~~-----------~~~~~---~~~l~iDDi~~~~-- 100 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKSD--------ALLIHPNEIGSDA-----------ANAAA---EGPVLIEDIDAGG-- 100 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhcC--------CEEecHHHcchHH-----------HHhhh---cCeEEEECCCCCC--
Confidence 3499999999999999999998753 2355554322211 11111 1489999998762
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCCCcEEEEEecCCCCc---cccccccCCCcc--eEeeCCCCcHHH
Q 002386 671 SSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEK---IPQSLTSSGRFD--FHVQLPAPAASE 745 (929)
Q Consensus 671 ~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~VivIattn~~~~---L~~~L~~~~Rf~--~~i~l~~Pd~~e 745 (929)
.+ ...+.+.+....+. . ..++++++..+.. ..+.|++ ||. ..+++.+|+.+.
T Consensus 101 -~~---------~~~lf~l~n~~~~~----g-------~~ilits~~~p~~~~~~~~dL~S--Rl~~gl~~~l~~pd~e~ 157 (226)
T PRK09087 101 -FD---------ETGLFHLINSVRQA----G-------TSLLMTSRLWPSSWNVKLPDLKS--RLKAATVVEIGEPDDAL 157 (226)
T ss_pred -CC---------HHHHHHHHHHHHhC----C-------CeEEEECCCChHHhccccccHHH--HHhCCceeecCCCCHHH
Confidence 10 12444444443332 1 2455665554443 3577888 774 789999999999
Q ss_pred HHHHHHHHHhhcccccCHHHHHHHHhhcCCCChhhHHHHHHHHHHHHhh
Q 002386 746 RKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAAVG 794 (929)
Q Consensus 746 R~~IL~~~l~~~~~~~~d~~l~~LA~~teG~s~~DL~~Lv~~A~~~a~~ 794 (929)
|.+|+++.++.+++.++++.++.|+....| +.+.+..++++....+..
T Consensus 158 ~~~iL~~~~~~~~~~l~~ev~~~La~~~~r-~~~~l~~~l~~L~~~~~~ 205 (226)
T PRK09087 158 LSQVIFKLFADRQLYVDPHVVYYLVSRMER-SLFAAQTIVDRLDRLALE 205 (226)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999886 555666656665544443
No 162
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.21 E-value=3.7e-10 Score=135.94 Aligned_cols=193 Identities=17% Similarity=0.210 Sum_probs=128.3
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCcc--c---------
Q 002386 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKD--L--------- 620 (929)
Q Consensus 552 ~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~--~--------- 620 (929)
+|+++.|++..++.+...+.. ...+..+||+||+|+|||++|+.+|+.+..... .
T Consensus 14 ~~~eiiGq~~~~~~L~~~i~~--------------~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~ 79 (585)
T PRK14950 14 TFAELVGQEHVVQTLRNAIAE--------------GRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEM 79 (585)
T ss_pred CHHHhcCCHHHHHHHHHHHHh--------------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHH
Confidence 466888998888877664321 122345899999999999999999999863211 0
Q ss_pred --------eeeEEEEeccccccCchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHH
Q 002386 621 --------VAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVD 692 (929)
Q Consensus 621 --------~~~~~~V~~s~L~~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~ 692 (929)
...++.++... ....+.++..+..+..........|+||||+|.+.. ...+.|+.
T Consensus 80 c~~i~~~~~~d~~~i~~~~--~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~---------------~a~naLLk 142 (585)
T PRK14950 80 CRAIAEGSAVDVIEMDAAS--HTSVDDAREIIERVQFRPALARYKVYIIDEVHMLST---------------AAFNALLK 142 (585)
T ss_pred HHHHhcCCCCeEEEEeccc--cCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCH---------------HHHHHHHH
Confidence 01223333321 112333343332221111223356999999998841 33455666
Q ss_pred HHHHhcccccCccCCCcEEEEEecCCCCccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhhcccccCHHHHHHHHhh
Q 002386 693 IMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASK 772 (929)
Q Consensus 693 ~ld~~~~~~~~~~~~~~VivIattn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~d~~l~~LA~~ 772 (929)
.+++... .++||.+++..+.+.+.+++ |+. .+.|..++..+...+++..+...++.++++.+..++..
T Consensus 143 ~LEepp~---------~tv~Il~t~~~~kll~tI~S--R~~-~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~ 210 (585)
T PRK14950 143 TLEEPPP---------HAIFILATTEVHKVPATILS--RCQ-RFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARA 210 (585)
T ss_pred HHhcCCC---------CeEEEEEeCChhhhhHHHHh--ccc-eeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 6665432 35666666767778888887 665 68999999999999999998888888999999999998
Q ss_pred cCCCChhhHHHHHHHH
Q 002386 773 CDGYDAYDLEILVDRT 788 (929)
Q Consensus 773 teG~s~~DL~~Lv~~A 788 (929)
+.| +.+++..++++.
T Consensus 211 s~G-dlr~al~~LekL 225 (585)
T PRK14950 211 ATG-SMRDAENLLQQL 225 (585)
T ss_pred cCC-CHHHHHHHHHHH
Confidence 887 677776666654
No 163
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=1.5e-10 Score=138.55 Aligned_cols=217 Identities=18% Similarity=0.216 Sum_probs=149.0
Q ss_pred cccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccccc
Q 002386 554 SSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLS 633 (929)
Q Consensus 554 ~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~ 633 (929)
..+.|++.+++.+.+.+....... . -.-.|.+.+||.||+|+|||.||+++|..|.-.. ..++.+|+|+++
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL-----~-dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e---~aliR~DMSEy~ 561 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGL-----G-DPNRPIGSFLFLGPTGVGKTELAKALAEALFGDE---QALIRIDMSEYM 561 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCC-----C-CCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCC---ccceeechHHHH
Confidence 467889999999888775322110 0 0123335799999999999999999999986433 567888887753
Q ss_pred ---------cCchhhHHHHHHHHHHHHHhcC-CcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhc--ccc
Q 002386 634 ---------LEKGPIIRQALSNFISEALDHA-PSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG--EKR 701 (929)
Q Consensus 634 ---------~~~~~~~~~~l~~~f~~a~~~~-PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~--~~~ 701 (929)
|..+|-+..-=...+.++-.+. .|||+|||++...| .+++.|+..||.-. +..
T Consensus 562 EkHsVSrLIGaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEKAHp---------------dV~nilLQVlDdGrLTD~~ 626 (786)
T COG0542 562 EKHSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAHP---------------DVFNLLLQVLDDGRLTDGQ 626 (786)
T ss_pred HHHHHHHHhCCCCCCceeccccchhHhhhcCCCeEEEechhhhcCH---------------HHHHHHHHHhcCCeeecCC
Confidence 3322222111122333444444 57999999999764 78999999998643 222
Q ss_pred cCccCCCcEEEEEecCCCCc----------------------------cccccccCCCcceEeeCCCCcHHHHHHHHHHH
Q 002386 702 KSSCGIGPIAFVASAQSLEK----------------------------IPQSLTSSGRFDFHVQLPAPAASERKAILEHE 753 (929)
Q Consensus 702 ~~~~~~~~VivIattn~~~~----------------------------L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~ 753 (929)
.......+.++|+|+|--.. +.|.|+. |++.+|.|.+.+.+...+|+...
T Consensus 627 Gr~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLN--Rid~II~F~~L~~~~l~~Iv~~~ 704 (786)
T COG0542 627 GRTVDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLN--RIDEIIPFNPLSKEVLERIVDLQ 704 (786)
T ss_pred CCEEecceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHh--hcccEEeccCCCHHHHHHHHHHH
Confidence 23445568899999984210 2355555 99999999999999999998876
Q ss_pred Hhh-------c--ccccCHHHHHHHHhhcC--CCChhhHHHHHHHHHHHHhhcc
Q 002386 754 IQR-------R--SLECSDEILLDVASKCD--GYDAYDLEILVDRTVHAAVGRY 796 (929)
Q Consensus 754 l~~-------~--~~~~~d~~l~~LA~~te--G~s~~DL~~Lv~~A~~~a~~r~ 796 (929)
+.+ + .+.++++....++..+. .|.++-|+.++++-+...+.+.
T Consensus 705 L~~l~~~L~~~~i~l~~s~~a~~~l~~~gyd~~~GARpL~R~Iq~~i~~~La~~ 758 (786)
T COG0542 705 LNRLAKRLAERGITLELSDEAKDFLAEKGYDPEYGARPLRRAIQQEIEDPLADE 758 (786)
T ss_pred HHHHHHHHHhCCceEEECHHHHHHHHHhccCCCcCchHHHHHHHHHHHHHHHHH
Confidence 653 2 34578888999998864 5667778887777766665543
No 164
>CHL00176 ftsH cell division protein; Validated
Probab=99.20 E-value=1.3e-11 Score=148.27 Aligned_cols=89 Identities=28% Similarity=0.573 Sum_probs=83.5
Q ss_pred CCCccCCCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHcCCceEEEecccccccc
Q 002386 839 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKY 918 (929)
Q Consensus 839 ~~~~w~dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~glnfIsVkg~ELl~ky 918 (929)
..+.|+|++|++++++.+.+.+.+ ++.++.|...+.+.+.|+|||||||||||++|+++|++++.+|+.++++++.+.|
T Consensus 178 ~~~~f~dv~G~~~~k~~l~eiv~~-lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~ 256 (638)
T CHL00176 178 TGITFRDIAGIEEAKEEFEEVVSF-LKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMF 256 (638)
T ss_pred CCCCHHhccChHHHHHHHHHHHHH-HhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHh
Confidence 357899999999999999999886 6889999999999999999999999999999999999999999999999999999
Q ss_pred cChhhHHHhh
Q 002386 919 IGASEQAVRR 928 (929)
Q Consensus 919 IG~SEq~VRd 928 (929)
+|.+++.+|+
T Consensus 257 ~g~~~~~vr~ 266 (638)
T CHL00176 257 VGVGAARVRD 266 (638)
T ss_pred hhhhHHHHHH
Confidence 9999988875
No 165
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.20 E-value=5.5e-10 Score=140.01 Aligned_cols=218 Identities=19% Similarity=0.216 Sum_probs=145.0
Q ss_pred cccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccccc
Q 002386 554 SSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLS 633 (929)
Q Consensus 554 ~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~ 633 (929)
..+.|++.+++.+.+.+........ ....+...+||+||+|||||++|+++|+.+.... ..++.++|+.+.
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~------~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~---~~~i~~d~s~~~ 635 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLS------DPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDE---DAMVRIDMSEYM 635 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCC------CCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCC---CcEEEEechhhc
Confidence 3577899999999887754321100 0012335699999999999999999999875332 567888888764
Q ss_pred cCchhh---------HHH-HHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhc--ccc
Q 002386 634 LEKGPI---------IRQ-ALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG--EKR 701 (929)
Q Consensus 634 ~~~~~~---------~~~-~l~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~--~~~ 701 (929)
...... ... .-..+.........+||||||++.+.+ .+.+.|+..++.-. ...
T Consensus 636 ~~~~~~~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka~~---------------~v~~~Ll~~l~~g~l~d~~ 700 (852)
T TIGR03346 636 EKHSVARLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKAHP---------------DVFNVLLQVLDDGRLTDGQ 700 (852)
T ss_pred ccchHHHhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccCCH---------------HHHHHHHHHHhcCceecCC
Confidence 322110 000 001122222334457999999998752 56677777776532 111
Q ss_pred cCccCCCcEEEEEecCCCCc-------------------------cccccccCCCcceEeeCCCCcHHHHHHHHHHHHhh
Q 002386 702 KSSCGIGPIAFVASAQSLEK-------------------------IPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQR 756 (929)
Q Consensus 702 ~~~~~~~~VivIattn~~~~-------------------------L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~ 756 (929)
.......+.+||+|||.... +.|.|.. |++.++.|.+++.++..+|+...+..
T Consensus 701 g~~vd~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~--Rid~IivF~PL~~e~l~~I~~l~L~~ 778 (852)
T TIGR03346 701 GRTVDFRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLN--RIDEIVVFHPLGREQIARIVEIQLGR 778 (852)
T ss_pred CeEEecCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhc--CcCeEEecCCcCHHHHHHHHHHHHHH
Confidence 11223346789999886221 2345555 99999999999999999998876652
Q ss_pred -------c--ccccCHHHHHHHHhhcC--CCChhhHHHHHHHHHHHHhhccc
Q 002386 757 -------R--SLECSDEILLDVASKCD--GYDAYDLEILVDRTVHAAVGRYL 797 (929)
Q Consensus 757 -------~--~~~~~d~~l~~LA~~te--G~s~~DL~~Lv~~A~~~a~~r~~ 797 (929)
. .+.++++.+..|+.... .+.++.|+.++++.+...+.+.+
T Consensus 779 l~~~l~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~i~~~l~~~~ 830 (852)
T TIGR03346 779 LRKRLAERKITLELSDAALDFLAEAGYDPVYGARPLKRAIQREIENPLAKKI 830 (852)
T ss_pred HHHHHHHCCCeecCCHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHH
Confidence 2 25678999999999754 67889999999999887776543
No 166
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.19 E-value=3.4e-10 Score=136.48 Aligned_cols=232 Identities=16% Similarity=0.215 Sum_probs=134.6
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCcc----ceeeEEEE
Q 002386 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKD----LVAHIVFV 627 (929)
Q Consensus 552 ~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~----~~~~~~~V 627 (929)
++.++.|.+..+..+.+.+. .+.+.+++|+|||||||||+|+++++....... ...+++.+
T Consensus 152 ~~~~iiGqs~~~~~l~~~ia---------------~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i 216 (615)
T TIGR02903 152 AFSEIVGQERAIKALLAKVA---------------SPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEV 216 (615)
T ss_pred cHHhceeCcHHHHHHHHHHh---------------cCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEE
Confidence 45678888888887765431 122457999999999999999999887642211 12568889
Q ss_pred eccccccCc-------hhhH----HHHHHHHHHH----------HHhcCCcEEEEccccccccCCCCCCCCCCchhHHHH
Q 002386 628 CCSRLSLEK-------GPII----RQALSNFISE----------ALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIAL 686 (929)
Q Consensus 628 ~~s~L~~~~-------~~~~----~~~l~~~f~~----------a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l 686 (929)
+|..+.... .+.. .+.....+.. .......+|||||++.|-. ..
T Consensus 217 ~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~---------------~~ 281 (615)
T TIGR02903 217 DGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDP---------------LL 281 (615)
T ss_pred echhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCH---------------HH
Confidence 987653110 0000 0001111110 0012346999999988731 23
Q ss_pred HHHHHHHHHHhc----c-----ccc----------CccCCCcEEEEE-ecCCCCccccccccCCCcceEeeCCCCcHHHH
Q 002386 687 TKFLVDIMDEYG----E-----KRK----------SSCGIGPIAFVA-SAQSLEKIPQSLTSSGRFDFHVQLPAPAASER 746 (929)
Q Consensus 687 ~~~L~~~ld~~~----~-----~~~----------~~~~~~~VivIa-ttn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR 746 (929)
...|...++... . ... .......+++|+ |++.++.++++|++ ||. .+.|++++.+++
T Consensus 282 Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrS--R~~-~i~~~pls~edi 358 (615)
T TIGR02903 282 QNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRS--RCA-EVFFEPLTPEDI 358 (615)
T ss_pred HHHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHh--cee-EEEeCCCCHHHH
Confidence 334444443311 0 000 000112355554 55667789999998 887 678999999999
Q ss_pred HHHHHHHHhhcccccCHHHHHHHHhhcCCCChhhHHHHHHHHHHHHhhccccCCccccccccccccccccccccc
Q 002386 747 KAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMH 821 (929)
Q Consensus 747 ~~IL~~~l~~~~~~~~d~~l~~LA~~teG~s~~DL~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~lt~edf~~al~ 821 (929)
.+|++..+.+.+..++++.+..|+..+. .++...+.+..++..+..+... .........++.+|+.+++.
T Consensus 359 ~~Il~~~a~~~~v~ls~eal~~L~~ys~--~gRraln~L~~~~~~~~~~~~~---~~~~~~~~~I~~edv~~~l~ 428 (615)
T TIGR02903 359 ALIVLNAAEKINVHLAAGVEELIARYTI--EGRKAVNILADVYGYALYRAAE---AGKENDKVTITQDDVYEVIQ 428 (615)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHCCC--cHHHHHHHHHHHHHHHHHHHHH---hccCCCCeeECHHHHHHHhC
Confidence 9999999987777788888888888764 3344434444443332222100 00011223566677666654
No 167
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.18 E-value=1.2e-10 Score=127.80 Aligned_cols=141 Identities=16% Similarity=0.207 Sum_probs=95.4
Q ss_pred CceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccc------cccCchhhH---H---HHHHHHHHHHHhcCCc
Q 002386 590 PGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSR------LSLEKGPII---R---QALSNFISEALDHAPS 657 (929)
Q Consensus 590 ~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~------L~~~~~~~~---~---~~l~~~f~~a~~~~Ps 657 (929)
++++||.|+||||||++++.+|+.++ .+++.|+|.. +.|...-.. . ......+..|. ..+.
T Consensus 64 ~~~ilL~G~pGtGKTtla~~lA~~l~------~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~-~~g~ 136 (327)
T TIGR01650 64 DRRVMVQGYHGTGKSTHIEQIAARLN------WPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWAL-QHNV 136 (327)
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHHC------CCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHH-hCCe
Confidence 47899999999999999999999998 6677777654 333321100 0 00111233333 4567
Q ss_pred EEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHh-----cccccCccCCCcEEEEEecCCCC------------
Q 002386 658 IVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEY-----GEKRKSSCGIGPIAFVASAQSLE------------ 720 (929)
Q Consensus 658 VL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~-----~~~~~~~~~~~~VivIattn~~~------------ 720 (929)
+|++||+|..-+ .....|..+++.- ............+.+|||+|+.+
T Consensus 137 illlDEin~a~p---------------~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~ 201 (327)
T TIGR01650 137 ALCFDEYDAGRP---------------DVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQ 201 (327)
T ss_pred EEEechhhccCH---------------HHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeee
Confidence 899999998642 4455666666631 11111122334689999999865
Q ss_pred ccccccccCCCcceEeeCCCCcHHHHHHHHHHHH
Q 002386 721 KIPQSLTSSGRFDFHVQLPAPAASERKAILEHEI 754 (929)
Q Consensus 721 ~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l 754 (929)
.++++++. ||..++.+..|+.++-.+|+....
T Consensus 202 ~l~~A~lD--RF~i~~~~~Yp~~e~E~~Il~~~~ 233 (327)
T TIGR01650 202 QINQAQMD--RWSIVTTLNYLEHDNEAAIVLAKA 233 (327)
T ss_pred cCCHHHHh--heeeEeeCCCCCHHHHHHHHHhhc
Confidence 35788888 999888999999999999988654
No 168
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.18 E-value=6.4e-10 Score=133.73 Aligned_cols=193 Identities=19% Similarity=0.184 Sum_probs=132.5
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCc-------------
Q 002386 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHK------------- 618 (929)
Q Consensus 552 ~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~------------- 618 (929)
+|+++.|++..++.+...+.. ...+..+|||||+|+|||++|+.+|+.+....
T Consensus 15 ~f~~viGq~~~~~~L~~~i~~--------------~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~s 80 (614)
T PRK14971 15 TFESVVGQEALTTTLKNAIAT--------------NKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECES 80 (614)
T ss_pred CHHHhcCcHHHHHHHHHHHHc--------------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchH
Confidence 466888998888887775431 12235599999999999999999999986321
Q ss_pred ------cceeeEEEEeccccccCchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHH
Q 002386 619 ------DLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVD 692 (929)
Q Consensus 619 ------~~~~~~~~V~~s~L~~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~ 692 (929)
.....+..+++.. ......++..+..+-.........|+||||+|.+.. ...+.|+.
T Consensus 81 C~~~~~~~~~n~~~ld~~~--~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~---------------~a~naLLK 143 (614)
T PRK14971 81 CVAFNEQRSYNIHELDAAS--NNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQ---------------AAFNAFLK 143 (614)
T ss_pred HHHHhcCCCCceEEecccc--cCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCH---------------HHHHHHHH
Confidence 0012344444432 112334444333221111222345999999998841 34566777
Q ss_pred HHHHhcccccCccCCCcEEEEEecCCCCccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhhcccccCHHHHHHHHhh
Q 002386 693 IMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASK 772 (929)
Q Consensus 693 ~ld~~~~~~~~~~~~~~VivIattn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~d~~l~~LA~~ 772 (929)
.|++... ..++|.+++....+.+.+++ |.. .++|.+++.++....++..+.+.++.++++.+..|+..
T Consensus 144 ~LEepp~---------~tifIL~tt~~~kIl~tI~S--Rc~-iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~ 211 (614)
T PRK14971 144 TLEEPPS---------YAIFILATTEKHKILPTILS--RCQ-IFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQK 211 (614)
T ss_pred HHhCCCC---------CeEEEEEeCCchhchHHHHh--hhh-eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 7776543 25666666667888899988 765 78999999999999999999888999999999999998
Q ss_pred cCCCChhhHHHHHHHH
Q 002386 773 CDGYDAYDLEILVDRT 788 (929)
Q Consensus 773 teG~s~~DL~~Lv~~A 788 (929)
+.| +.+++..+++..
T Consensus 212 s~g-dlr~al~~Lekl 226 (614)
T PRK14971 212 ADG-GMRDALSIFDQV 226 (614)
T ss_pred cCC-CHHHHHHHHHHH
Confidence 866 666666666554
No 169
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.18 E-value=4.1e-10 Score=122.37 Aligned_cols=139 Identities=16% Similarity=0.229 Sum_probs=91.3
Q ss_pred ceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccc------cccCchhhH-HHHHHH-----------------
Q 002386 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSR------LSLEKGPII-RQALSN----------------- 646 (929)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~------L~~~~~~~~-~~~l~~----------------- 646 (929)
.++||+||||||||++|+++|+.++ .+++.++|.. +.+.+.+.. ...+..
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~~lg------~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVARKRD------RPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWV 95 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhC------CCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeec
Confidence 6799999999999999999999887 6788887754 222221110 111111
Q ss_pred --HHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccC-------ccCCCcEEEEEecC
Q 002386 647 --FISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKS-------SCGIGPIAFVASAQ 717 (929)
Q Consensus 647 --~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~-------~~~~~~VivIattn 717 (929)
.+..|. ..+.+|+|||+|.+-+ .....|...|++..-.... .....++.+|+|+|
T Consensus 96 ~g~l~~A~-~~g~~lllDEi~r~~~---------------~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN 159 (262)
T TIGR02640 96 DNRLTLAV-REGFTLVYDEFTRSKP---------------ETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSN 159 (262)
T ss_pred CchHHHHH-HcCCEEEEcchhhCCH---------------HHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeC
Confidence 111222 2456999999998642 4556666666542210000 00113578999999
Q ss_pred CCC-----ccccccccCCCcceEeeCCCCcHHHHHHHHHHHH
Q 002386 718 SLE-----KIPQSLTSSGRFDFHVQLPAPAASERKAILEHEI 754 (929)
Q Consensus 718 ~~~-----~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l 754 (929)
+.. .++++|.+ ||. .+.++.|+.++-.+|++...
T Consensus 160 ~~~~~g~~~l~~aL~~--R~~-~i~i~~P~~~~e~~Il~~~~ 198 (262)
T TIGR02640 160 PVEYAGVHETQDALLD--RLI-TIFMDYPDIDTETAILRAKT 198 (262)
T ss_pred CccccceecccHHHHh--hcE-EEECCCCCHHHHHHHHHHhh
Confidence 753 56888888 885 78999999999999998764
No 170
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.16 E-value=6e-10 Score=138.75 Aligned_cols=216 Identities=13% Similarity=0.193 Sum_probs=142.1
Q ss_pred cccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccccc
Q 002386 554 SSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLS 633 (929)
Q Consensus 554 ~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~ 633 (929)
..+.|++.+++.+.+.+....... .....+.+.+||+||+|||||.+|+++|+.+.... ..++.++++++.
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl------~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~---~~~~~~dmse~~ 636 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGL------EDPRKPLGVFLLVGPSGVGKTETALALAELLYGGE---QNLITINMSEFQ 636 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCC------CCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCC---cceEEEeHHHhh
Confidence 367889999999998875432110 00012223589999999999999999999985322 467778877653
Q ss_pred ---------cCchhhHHHH-HHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhc--ccc
Q 002386 634 ---------LEKGPIIRQA-LSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG--EKR 701 (929)
Q Consensus 634 ---------~~~~~~~~~~-l~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~--~~~ 701 (929)
|...+..... -..+......+..+||+|||+|.+.+ .+.+.|...++... ...
T Consensus 637 ~~~~~~~l~g~~~gyvg~~~~g~L~~~v~~~p~svvllDEieka~~---------------~v~~~Llq~ld~g~l~d~~ 701 (852)
T TIGR03345 637 EAHTVSRLKGSPPGYVGYGEGGVLTEAVRRKPYSVVLLDEVEKAHP---------------DVLELFYQVFDKGVMEDGE 701 (852)
T ss_pred hhhhhccccCCCCCcccccccchHHHHHHhCCCcEEEEechhhcCH---------------HHHHHHHHHhhcceeecCC
Confidence 2211111000 00112223346678999999987652 56677778777543 111
Q ss_pred cCccCCCcEEEEEecCCCC-----------------------------ccccccccCCCcceEeeCCCCcHHHHHHHHHH
Q 002386 702 KSSCGIGPIAFVASAQSLE-----------------------------KIPQSLTSSGRFDFHVQLPAPAASERKAILEH 752 (929)
Q Consensus 702 ~~~~~~~~VivIattn~~~-----------------------------~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~ 752 (929)
.......+.++|+|+|-.. .+.|+|.+ |++ +|.|.+.+.++..+|+..
T Consensus 702 Gr~vd~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEfln--Ri~-iI~F~pLs~e~l~~Iv~~ 778 (852)
T TIGR03345 702 GREIDFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLG--RMT-VIPYLPLDDDVLAAIVRL 778 (852)
T ss_pred CcEEeccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhc--cee-EEEeCCCCHHHHHHHHHH
Confidence 1223334688999988411 13455555 887 889999999999999987
Q ss_pred HHhh-------c-c--cccCHHHHHHHHhhcCC--CChhhHHHHHHHHHHHHhhcc
Q 002386 753 EIQR-------R-S--LECSDEILLDVASKCDG--YDAYDLEILVDRTVHAAVGRY 796 (929)
Q Consensus 753 ~l~~-------~-~--~~~~d~~l~~LA~~teG--~s~~DL~~Lv~~A~~~a~~r~ 796 (929)
.+.. + + +.+++..++.|+..+.+ |.++.++.++++.+...+.+.
T Consensus 779 ~L~~l~~rl~~~~gi~l~i~d~a~~~La~~g~~~~~GAR~L~r~Ie~~i~~~la~~ 834 (852)
T TIGR03345 779 KLDRIARRLKENHGAELVYSEALVEHIVARCTEVESGARNIDAILNQTLLPELSRQ 834 (852)
T ss_pred HHHHHHHHHHHhcCceEEECHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHH
Confidence 6643 1 3 45889999999998754 678889998888777766654
No 171
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.16 E-value=2.8e-11 Score=132.89 Aligned_cols=83 Identities=23% Similarity=0.363 Sum_probs=72.7
Q ss_pred CCCCchhhHHHHHHHHhcCCCchhhhhhCCCCC---CceeEEecCCCCcHHHHHHHHHHHcC-------CceEEEecccc
Q 002386 845 DVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRL---RSNVLLYGPPGCGKTHIVGAAAAACS-------LRFISVKGPEL 914 (929)
Q Consensus 845 dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~---~sGiLLyGpPGtGKT~LA~alA~e~g-------lnfIsVkg~EL 914 (929)
+++||+++|+.+.+++.| ..+++.+.+.++.. +.++||+||||||||++|+++|+.+. .+|+.++++++
T Consensus 23 ~l~Gl~~vk~~i~e~~~~-~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l 101 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAAL-LLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDL 101 (284)
T ss_pred hccCHHHHHHHHHHHHHH-HHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHH
Confidence 689999999999999998 67888888877664 45899999999999999999998762 37999999999
Q ss_pred cccccChhhHHHhh
Q 002386 915 LNKYIGASEQAVRR 928 (929)
Q Consensus 915 l~kyIG~SEq~VRd 928 (929)
+++|+|+++.++++
T Consensus 102 ~~~~~g~~~~~~~~ 115 (284)
T TIGR02880 102 VGQYIGHTAPKTKE 115 (284)
T ss_pred hHhhcccchHHHHH
Confidence 99999999987764
No 172
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.16 E-value=8.7e-10 Score=137.71 Aligned_cols=215 Identities=17% Similarity=0.236 Sum_probs=139.3
Q ss_pred cccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccccc
Q 002386 554 SSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLS 633 (929)
Q Consensus 554 ~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~ 633 (929)
..+.|++.+++.+.+.+....... . ..-.+.+.+||+||+|||||++|+++|+.+.... ..++.++|+.+.
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl-----~-~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~---~~~i~id~se~~ 638 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGL-----S-DPNRPIGSFLFLGPTGVGKTELCKALANFMFDSD---DAMVRIDMSEFM 638 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcc-----c-CCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCC---CcEEEEEhHHhh
Confidence 356789999999888775432100 0 0011224699999999999999999999875322 457888888764
Q ss_pred cCchhhHHHHH-----------HHHHHHHHh-cCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhc--c
Q 002386 634 LEKGPIIRQAL-----------SNFISEALD-HAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG--E 699 (929)
Q Consensus 634 ~~~~~~~~~~l-----------~~~f~~a~~-~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~--~ 699 (929)
.... ....+ ...+..+.. ...++|||||++.+.+ .+.+.|...++... .
T Consensus 639 ~~~~--~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka~~---------------~v~~~Ll~ile~g~l~d 701 (857)
T PRK10865 639 EKHS--VSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHP---------------DVFNILLQVLDDGRLTD 701 (857)
T ss_pred hhhh--HHHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhCCH---------------HHHHHHHHHHhhCceec
Confidence 3211 00000 112233322 3348999999998742 55667777776432 1
Q ss_pred cccCccCCCcEEEEEecCCCC-------------------------ccccccccCCCcceEeeCCCCcHHHHHHHHHHHH
Q 002386 700 KRKSSCGIGPIAFVASAQSLE-------------------------KIPQSLTSSGRFDFHVQLPAPAASERKAILEHEI 754 (929)
Q Consensus 700 ~~~~~~~~~~VivIattn~~~-------------------------~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l 754 (929)
.........+.++|+|+|... .+.|.|.. |++.++.|.+++.+...+|++.++
T Consensus 702 ~~gr~vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELln--Rld~iivF~PL~~edl~~Iv~~~L 779 (857)
T PRK10865 702 GQGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFIN--RIDEVVVFHPLGEQHIASIAQIQL 779 (857)
T ss_pred CCceEEeecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHH--hCCeeEecCCCCHHHHHHHHHHHH
Confidence 111122233567888988621 23456666 999999999999999999988777
Q ss_pred hh---------cccccCHHHHHHHHhhc--CCCChhhHHHHHHHHHHHHhhcc
Q 002386 755 QR---------RSLECSDEILLDVASKC--DGYDAYDLEILVDRTVHAAVGRY 796 (929)
Q Consensus 755 ~~---------~~~~~~d~~l~~LA~~t--eG~s~~DL~~Lv~~A~~~a~~r~ 796 (929)
.. ..+.++++.+..|+... ..|.++.|+.++++-+...+.+.
T Consensus 780 ~~l~~rl~~~gi~l~is~~al~~L~~~gy~~~~GARpL~r~I~~~i~~~la~~ 832 (857)
T PRK10865 780 QRLYKRLEERGYEIHISDEALKLLSENGYDPVYGARPLKRAIQQQIENPLAQQ 832 (857)
T ss_pred HHHHHHHHhCCCcCcCCHHHHHHHHHcCCCccCChHHHHHHHHHHHHHHHHHH
Confidence 54 12457888899998753 23557888888888877766554
No 173
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.14 E-value=7.1e-10 Score=138.61 Aligned_cols=217 Identities=15% Similarity=0.167 Sum_probs=140.4
Q ss_pred cccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccccc
Q 002386 554 SSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLS 633 (929)
Q Consensus 554 ~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~ 633 (929)
..+.|++.+++.+.+.+....... .. .-.|...+||+||+|||||++|+++|+.+.... ..++.++++++.
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl-----~~-~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~---~~~~~~d~s~~~ 579 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGL-----KN-PNRPIASFLFSGPTGVGKTELTKALASYFFGSE---DAMIRLDMSEYM 579 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcc-----cC-CCCCceEEEEECCCCCcHHHHHHHHHHHhcCCc---cceEEEEchhcc
Confidence 457789999999888764321100 00 012224589999999999999999999884222 456777776654
Q ss_pred cCc---------hhhHH-HHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhc--ccc
Q 002386 634 LEK---------GPIIR-QALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG--EKR 701 (929)
Q Consensus 634 ~~~---------~~~~~-~~l~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~--~~~ 701 (929)
... .+... .....+....+....+|++|||+|.+.+ .+.+.|+..++... ...
T Consensus 580 ~~~~~~~l~g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka~~---------------~v~~~Llq~le~g~~~d~~ 644 (821)
T CHL00095 580 EKHTVSKLIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKAHP---------------DIFNLLLQILDDGRLTDSK 644 (821)
T ss_pred ccccHHHhcCCCCcccCcCccchHHHHHHhCCCeEEEECChhhCCH---------------HHHHHHHHHhccCceecCC
Confidence 211 11000 0011122333334448999999998753 66778888887532 111
Q ss_pred cCccCCCcEEEEEecCCCCc-------------------------------------cccccccCCCcceEeeCCCCcHH
Q 002386 702 KSSCGIGPIAFVASAQSLEK-------------------------------------IPQSLTSSGRFDFHVQLPAPAAS 744 (929)
Q Consensus 702 ~~~~~~~~VivIattn~~~~-------------------------------------L~~~L~~~~Rf~~~i~l~~Pd~~ 744 (929)
.......+.++|+|+|.... +.|.|.+ |++.+|.|.+.+.+
T Consensus 645 g~~v~~~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~pefln--Rid~ii~F~pL~~~ 722 (821)
T CHL00095 645 GRTIDFKNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLN--RLDEIIVFRQLTKN 722 (821)
T ss_pred CcEEecCceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhc--cCCeEEEeCCCCHH
Confidence 12223347889999885321 1234455 99999999999999
Q ss_pred HHHHHHHHHHhh-------c--ccccCHHHHHHHHhhc--CCCChhhHHHHHHHHHHHHhhcc
Q 002386 745 ERKAILEHEIQR-------R--SLECSDEILLDVASKC--DGYDAYDLEILVDRTVHAAVGRY 796 (929)
Q Consensus 745 eR~~IL~~~l~~-------~--~~~~~d~~l~~LA~~t--eG~s~~DL~~Lv~~A~~~a~~r~ 796 (929)
+..+|++..+.+ + .+.++++....|+... ..|.++.|+.++++.+...+.+.
T Consensus 723 ~l~~Iv~~~l~~l~~rl~~~~i~l~~~~~~~~~La~~~~~~~~GAR~l~r~i~~~i~~~l~~~ 785 (821)
T CHL00095 723 DVWEIAEIMLKNLFKRLNEQGIQLEVTERIKTLLIEEGYNPLYGARPLRRAIMRLLEDPLAEE 785 (821)
T ss_pred HHHHHHHHHHHHHHHHHHHCCcEEEECHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHH
Confidence 999998877653 2 3568888899999863 35667888888888777666554
No 174
>CHL00181 cbbX CbbX; Provisional
Probab=99.13 E-value=3.9e-11 Score=131.65 Aligned_cols=85 Identities=21% Similarity=0.355 Sum_probs=71.5
Q ss_pred cCCCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCC---ceeEEecCCCCcHHHHHHHHHHHc---C----CceEEEecc
Q 002386 843 WDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLR---SNVLLYGPPGCGKTHIVGAAAAAC---S----LRFISVKGP 912 (929)
Q Consensus 843 w~dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~---sGiLLyGpPGtGKT~LA~alA~e~---g----lnfIsVkg~ 912 (929)
+.+++||+++|+.+.+.+.| ..++..+.+.++..+ .++||+||||||||++|+++|+++ | .+|+.++++
T Consensus 22 ~~~l~Gl~~vK~~i~e~~~~-~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~ 100 (287)
T CHL00181 22 DEELVGLAPVKTRIREIAAL-LLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRD 100 (287)
T ss_pred HHhcCCcHHHHHHHHHHHHH-HHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHH
Confidence 45799999999999999988 456777777776443 358999999999999999999876 2 369999999
Q ss_pred cccccccChhhHHHhh
Q 002386 913 ELLNKYIGASEQAVRR 928 (929)
Q Consensus 913 ELl~kyIG~SEq~VRd 928 (929)
+|+++|+|++++.+++
T Consensus 101 ~l~~~~~g~~~~~~~~ 116 (287)
T CHL00181 101 DLVGQYIGHTAPKTKE 116 (287)
T ss_pred HHHHHHhccchHHHHH
Confidence 9999999999887653
No 175
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.12 E-value=5.5e-11 Score=129.24 Aligned_cols=86 Identities=23% Similarity=0.350 Sum_probs=70.1
Q ss_pred ccCCCCCchhhHHHHHHHHhcCCCchhhhhhCCCC---CCceeEEecCCCCcHHHHHHHHHHHc-------CCceEEEec
Q 002386 842 GWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLR---LRSNVLLYGPPGCGKTHIVGAAAAAC-------SLRFISVKG 911 (929)
Q Consensus 842 ~w~dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr---~~sGiLLyGpPGtGKT~LA~alA~e~-------glnfIsVkg 911 (929)
..+++.||+.||+.+++.+.|+........ .++. ...++|||||||||||++|+++|+++ ..+|+.+++
T Consensus 4 ~l~~~~Gl~~vk~~i~~~~~~~~~~~~~~~-~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~ 82 (261)
T TIGR02881 4 ELSRMVGLDEVKALIKEIYAWIQINEKRKE-EGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVER 82 (261)
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHHHHHHH-cCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecH
Confidence 356799999999999999999866533332 3332 23578999999999999999999874 347999999
Q ss_pred ccccccccChhhHHHhh
Q 002386 912 PELLNKYIGASEQAVRR 928 (929)
Q Consensus 912 ~ELl~kyIG~SEq~VRd 928 (929)
++++++|+|++++.+++
T Consensus 83 ~~l~~~~~g~~~~~~~~ 99 (261)
T TIGR02881 83 ADLVGEYIGHTAQKTRE 99 (261)
T ss_pred HHhhhhhccchHHHHHH
Confidence 99999999999988764
No 176
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.11 E-value=8.8e-10 Score=118.64 Aligned_cols=184 Identities=21% Similarity=0.314 Sum_probs=115.5
Q ss_pred eEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccccccCchhhHHHHHHHHHHHHHh-----cCCcEEEEccccc
Q 002386 592 HILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALD-----HAPSIVIFDNLDS 666 (929)
Q Consensus 592 ~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~~~~~~~~~~~l~~~f~~a~~-----~~PsVL~LDEiD~ 666 (929)
.++|+||||||||+|||.|+....... ..|+.++... ....+ ++++|+.+.. ....||||||++.
T Consensus 164 SmIlWGppG~GKTtlArlia~tsk~~S---yrfvelSAt~---a~t~d----vR~ife~aq~~~~l~krkTilFiDEiHR 233 (554)
T KOG2028|consen 164 SMILWGPPGTGKTTLARLIASTSKKHS---YRFVELSATN---AKTND----VRDIFEQAQNEKSLTKRKTILFIDEIHR 233 (554)
T ss_pred ceEEecCCCCchHHHHHHHHhhcCCCc---eEEEEEeccc---cchHH----HHHHHHHHHHHHhhhcceeEEEeHHhhh
Confidence 499999999999999999998765332 3455554432 12223 4455555532 3567999999999
Q ss_pred cccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCCCcEEEEEec--CCCCccccccccCCCcceEeeCCCCcHH
Q 002386 667 IISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASA--QSLEKIPQSLTSSGRFDFHVQLPAPAAS 744 (929)
Q Consensus 667 L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~VivIatt--n~~~~L~~~L~~~~Rf~~~i~l~~Pd~~ 744 (929)
+-.. ....|+..++. +.|.+|++| |+.-.++.+|.+ |.. +|-+.....+
T Consensus 234 FNks---------------QQD~fLP~VE~-----------G~I~lIGATTENPSFqln~aLlS--RC~-VfvLekL~~n 284 (554)
T KOG2028|consen 234 FNKS---------------QQDTFLPHVEN-----------GDITLIGATTENPSFQLNAALLS--RCR-VFVLEKLPVN 284 (554)
T ss_pred hhhh---------------hhhcccceecc-----------CceEEEecccCCCccchhHHHHh--ccc-eeEeccCCHH
Confidence 7521 11223332221 248888776 445578899999 655 7788888999
Q ss_pred HHHHHHHHHHh---h--c--------ccccCHHHHHHHHhhcCCCChhhHHHHHHHHHHHHhhccccCCccccccccccc
Q 002386 745 ERKAILEHEIQ---R--R--------SLECSDEILLDVASKCDGYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTL 811 (929)
Q Consensus 745 eR~~IL~~~l~---~--~--------~~~~~d~~l~~LA~~teG~s~~DL~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~l 811 (929)
....||.+.+. + + .+.+++..++.++..++|-..+.|..|- .+......|. ....+..+
T Consensus 285 ~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR~aLN~Le-ms~~m~~tr~-------g~~~~~~l 356 (554)
T KOG2028|consen 285 AVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDARAALNALE-MSLSMFCTRS-------GQSSRVLL 356 (554)
T ss_pred HHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHHHHHHHHH-HHHHHHHhhc-------CCccccee
Confidence 99999988554 1 1 1235677899999999997666555442 2222222221 01123456
Q ss_pred ccccccccccc
Q 002386 812 VRDDFSQAMHE 822 (929)
Q Consensus 812 t~edf~~al~~ 822 (929)
+.+|+.+.+..
T Consensus 357 SidDvke~lq~ 367 (554)
T KOG2028|consen 357 SIDDVKEGLQR 367 (554)
T ss_pred cHHHHHHHHhh
Confidence 77777666554
No 177
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.11 E-value=4.5e-09 Score=108.10 Aligned_cols=194 Identities=20% Similarity=0.243 Sum_probs=135.5
Q ss_pred ccccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEecc
Q 002386 551 SNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCS 630 (929)
Q Consensus 551 ~~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s 630 (929)
..+..+.|.+.+.+.+.+....+.. ..+..+|||+|..|||||+|+||+-.++..... ..+.|+-.
T Consensus 57 i~L~~l~Gvd~qk~~L~~NT~~F~~-----------G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~gl---rLVEV~k~ 122 (287)
T COG2607 57 IDLADLVGVDRQKEALVRNTEQFAE-----------GLPANNVLLWGARGTGKSSLVKALLNEYADEGL---RLVEVDKE 122 (287)
T ss_pred cCHHHHhCchHHHHHHHHHHHHHHc-----------CCcccceEEecCCCCChHHHHHHHHHHHHhcCC---eEEEEcHH
Confidence 4577889999999999987765554 344567999999999999999999999875543 36777776
Q ss_pred ccccCchhhHHHHHHHHHHHHHh-cCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCCCc
Q 002386 631 RLSLEKGPIIRQALSNFISEALD-HAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (929)
Q Consensus 631 ~L~~~~~~~~~~~l~~~f~~a~~-~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (929)
++.. +-.+++..+. ...-|||+||+-. .++. .-...|...|++-..... .+
T Consensus 123 dl~~---------Lp~l~~~Lr~~~~kFIlFcDDLSF-------e~gd-------~~yK~LKs~LeG~ve~rP-----~N 174 (287)
T COG2607 123 DLAT---------LPDLVELLRARPEKFILFCDDLSF-------EEGD-------DAYKALKSALEGGVEGRP-----AN 174 (287)
T ss_pred HHhh---------HHHHHHHHhcCCceEEEEecCCCC-------CCCc-------hHHHHHHHHhcCCcccCC-----Ce
Confidence 6543 2223333332 3456999999832 1111 335567777776543332 37
Q ss_pred EEEEEecCCCCcccccccc--------------------CCCcceEeeCCCCcHHHHHHHHHHHHhhcccccCHHHHHH-
Q 002386 710 IAFVASAQSLEKIPQSLTS--------------------SGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLD- 768 (929)
Q Consensus 710 VivIattn~~~~L~~~L~~--------------------~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~d~~l~~- 768 (929)
|+|.||+|+.+.++..+.. +.||+..+.|++++.++-.+|+..+++..++..+++.+..
T Consensus 175 Vl~YATSNRRHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~~~e~l~~e 254 (287)
T COG2607 175 VLFYATSNRRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDISDEELHAE 254 (287)
T ss_pred EEEEEecCCcccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 9999999997766532211 2399999999999999999999999999898887765443
Q ss_pred ---HHhhcCCCChhhHHHHHH
Q 002386 769 ---VASKCDGYDAYDLEILVD 786 (929)
Q Consensus 769 ---LA~~teG~s~~DL~~Lv~ 786 (929)
.|....|-+++-....++
T Consensus 255 Al~WAt~rg~RSGR~A~QF~~ 275 (287)
T COG2607 255 ALQWATTRGGRSGRVAWQFIR 275 (287)
T ss_pred HHHHHHhcCCCccHhHHHHHH
Confidence 344456667765444433
No 178
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.07 E-value=1.4e-09 Score=112.13 Aligned_cols=153 Identities=20% Similarity=0.202 Sum_probs=98.0
Q ss_pred CceEEEECCCCcHHHHHHHHHHHHhccCcc------------------ceeeEEEEeccccccCchhhHHHHHHHHHHHH
Q 002386 590 PGHILIHGPPGSGKTSLAKAVAKSLEHHKD------------------LVAHIVFVCCSRLSLEKGPIIRQALSNFISEA 651 (929)
Q Consensus 590 ~~~vLL~GppGtGKTtLaralA~~L~~~~~------------------~~~~~~~V~~s~L~~~~~~~~~~~l~~~f~~a 651 (929)
+..+||+||+|+|||++|+.+++.+..... ....+.++....- .-..+.++..+..+....
T Consensus 14 ~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~-~~~~~~i~~i~~~~~~~~ 92 (188)
T TIGR00678 14 AHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQ-SIKVDQVRELVEFLSRTP 92 (188)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccC-cCCHHHHHHHHHHHccCc
Confidence 456999999999999999999999864200 0001222222110 112233333232222211
Q ss_pred HhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCCCcEEEEEecCCCCccccccccCCC
Q 002386 652 LDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGR 731 (929)
Q Consensus 652 ~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~VivIattn~~~~L~~~L~~~~R 731 (929)
......|+||||+|.+.. ...+.|+..+++... ...+|.+++....+.+++++ |
T Consensus 93 ~~~~~kviiide~~~l~~---------------~~~~~Ll~~le~~~~---------~~~~il~~~~~~~l~~~i~s--r 146 (188)
T TIGR00678 93 QESGRRVVIIEDAERMNE---------------AAANALLKTLEEPPP---------NTLFILITPSPEKLLPTIRS--R 146 (188)
T ss_pred ccCCeEEEEEechhhhCH---------------HHHHHHHHHhcCCCC---------CeEEEEEECChHhChHHHHh--h
Confidence 223456999999999852 223456666655322 25566666677889999998 7
Q ss_pred cceEeeCCCCcHHHHHHHHHHHHhhcccccCHHHHHHHHhhcCCC
Q 002386 732 FDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGY 776 (929)
Q Consensus 732 f~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~d~~l~~LA~~teG~ 776 (929)
+. .++|++|+.++..++++.. + ++++.+..++..+.|.
T Consensus 147 ~~-~~~~~~~~~~~~~~~l~~~----g--i~~~~~~~i~~~~~g~ 184 (188)
T TIGR00678 147 CQ-VLPFPPLSEEALLQWLIRQ----G--ISEEAAELLLALAGGS 184 (188)
T ss_pred cE-EeeCCCCCHHHHHHHHHHc----C--CCHHHHHHHHHHcCCC
Confidence 65 8999999999998888765 3 5777888888887774
No 179
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.06 E-value=1.9e-09 Score=116.33 Aligned_cols=132 Identities=19% Similarity=0.213 Sum_probs=97.1
Q ss_pred CCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCCCcEEEEEecCC------------CCcc
Q 002386 655 APSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQS------------LEKI 722 (929)
Q Consensus 655 ~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~VivIattn~------------~~~L 722 (929)
-|.||||||+++|= -..+.+|.+.|+.-. .+++++| ||+ |+-+
T Consensus 291 VpGVLFIDEvHmLD---------------IE~FsFlnrAlEse~---------aPIii~A-tNRG~~kiRGTd~~sPhGI 345 (450)
T COG1224 291 VPGVLFIDEVHMLD---------------IECFSFLNRALESEL---------APIIILA-TNRGMTKIRGTDIESPHGI 345 (450)
T ss_pred ecceEEEechhhhh---------------HHHHHHHHHHhhccc---------CcEEEEE-cCCceeeecccCCcCCCCC
Confidence 38899999998872 256677777776422 1455544 453 5567
Q ss_pred ccccccCCCcceEeeCCCCcHHHHHHHHHHHHhhcccccCHHHHHHHHhhcCCCChhhHHHHHHHHHHHHhhccccCCcc
Q 002386 723 PQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAAVGRYLHSDSS 802 (929)
Q Consensus 723 ~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~d~~l~~LA~~teG~s~~DL~~Lv~~A~~~a~~r~~~~~~~ 802 (929)
|..|+. |+- .+...+++.++.++|++..++..++.++++.++.|+...+.-+-+---.|+.-|...|..|
T Consensus 346 P~DlLD--Rll-II~t~py~~~EireIi~iRa~ee~i~l~~~Ale~L~~ig~etSLRYa~qLL~pa~iiA~~r------- 415 (450)
T COG1224 346 PLDLLD--RLL-IISTRPYSREEIREIIRIRAKEEDIELSDDALEYLTDIGEETSLRYAVQLLTPASIIAKRR------- 415 (450)
T ss_pred CHhhhh--hee-EEecCCCCHHHHHHHHHHhhhhhccccCHHHHHHHHhhchhhhHHHHHHhccHHHHHHHHh-------
Confidence 777777 665 7789999999999999999999999999999999999877766666666666666666655
Q ss_pred ccccccccccccccccccccccc
Q 002386 803 FEKHIKPTLVRDDFSQAMHEFLP 825 (929)
Q Consensus 803 ~~~~~~~~lt~edf~~al~~~~P 825 (929)
+...+..+|++.+-+-|..
T Consensus 416 ----g~~~V~~~dVe~a~~lF~D 434 (450)
T COG1224 416 ----GSKRVEVEDVERAKELFLD 434 (450)
T ss_pred ----CCCeeehhHHHHHHHHHhh
Confidence 3356777888777665543
No 180
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.06 E-value=7.8e-09 Score=112.68 Aligned_cols=195 Identities=19% Similarity=0.256 Sum_probs=117.3
Q ss_pred ceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccc--------c---ccCc-----hhhHHHHHHHHH-HHHHh
Q 002386 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSR--------L---SLEK-----GPIIRQALSNFI-SEALD 653 (929)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~--------L---~~~~-----~~~~~~~l~~~f-~~a~~ 653 (929)
+.++|+||+|+||||+++.+++.+..... .....+++.. + .+.. .......+...+ .....
T Consensus 44 ~~~~l~G~~G~GKTtl~~~l~~~l~~~~~--~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~ 121 (269)
T TIGR03015 44 GFILITGEVGAGKTTLIRNLLKRLDQERV--VAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAA 121 (269)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHhcCCCCe--EEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhC
Confidence 45899999999999999999998763221 1111122110 0 0100 011112222222 22335
Q ss_pred cCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCCCcEEEEEecCC--CCcc----ccccc
Q 002386 654 HAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQS--LEKI----PQSLT 727 (929)
Q Consensus 654 ~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~VivIattn~--~~~L----~~~L~ 727 (929)
..+.+|+|||++.+.. ...+.+..+. .+.... ...+.++.+... .+.+ ...+.
T Consensus 122 ~~~~vliiDe~~~l~~---------------~~~~~l~~l~-~~~~~~-----~~~~~vvl~g~~~~~~~l~~~~~~~l~ 180 (269)
T TIGR03015 122 GKRALLVVDEAQNLTP---------------ELLEELRMLS-NFQTDN-----AKLLQIFLVGQPEFRETLQSPQLQQLR 180 (269)
T ss_pred CCCeEEEEECcccCCH---------------HHHHHHHHHh-CcccCC-----CCeEEEEEcCCHHHHHHHcCchhHHHH
Confidence 6678999999998741 1122222221 111111 012333444332 1111 11244
Q ss_pred cCCCcceEeeCCCCcHHHHHHHHHHHHhhcc----cccCHHHHHHHHhhcCCCChhhHHHHHHHHHHHHhhccccCCccc
Q 002386 728 SSGRFDFHVQLPAPAASERKAILEHEIQRRS----LECSDEILLDVASKCDGYDAYDLEILVDRTVHAAVGRYLHSDSSF 803 (929)
Q Consensus 728 ~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~----~~~~d~~l~~LA~~teG~s~~DL~~Lv~~A~~~a~~r~~~~~~~~ 803 (929)
+ |+...+++++.+.++..+++...+...+ ..++++.++.|++.+.|+. +.+..+++.+...+..+
T Consensus 181 ~--r~~~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p-~~i~~l~~~~~~~a~~~-------- 249 (269)
T TIGR03015 181 Q--RIIASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIP-RLINILCDRLLLSAFLE-------- 249 (269)
T ss_pred h--heeeeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcc-cHHHHHHHHHHHHHHHc--------
Confidence 4 7777899999999999999998887543 3578899999999999974 56999999998888765
Q ss_pred ccccccccccccccccccc
Q 002386 804 EKHIKPTLVRDDFSQAMHE 822 (929)
Q Consensus 804 ~~~~~~~lt~edf~~al~~ 822 (929)
+...++.+++..++.+
T Consensus 250 ---~~~~i~~~~v~~~~~~ 265 (269)
T TIGR03015 250 ---EKREIGGEEVREVIAE 265 (269)
T ss_pred ---CCCCCCHHHHHHHHHH
Confidence 3356888888776654
No 181
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.05 E-value=2e-09 Score=104.46 Aligned_cols=129 Identities=22% Similarity=0.374 Sum_probs=81.4
Q ss_pred CCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccccccCchhhHHHH---HHHHHHHHHhcCCcEEEEcccc
Q 002386 589 LPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQA---LSNFISEALDHAPSIVIFDNLD 665 (929)
Q Consensus 589 ~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~~~~~~~~~~~---l~~~f~~a~~~~PsVL~LDEiD 665 (929)
..++++|+||||||||++++.+++.+.... .++.++++.............. ....+..+....+.+|++||++
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~ 94 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPG---APFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEID 94 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcCC---CCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChh
Confidence 346799999999999999999999984221 6788888877654333222111 1222333445678899999999
Q ss_pred ccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCCCcEEEEEecCCCC--ccccccccCCCcceEeeCCC
Q 002386 666 SIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLE--KIPQSLTSSGRFDFHVQLPA 740 (929)
Q Consensus 666 ~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~VivIattn~~~--~L~~~L~~~~Rf~~~i~l~~ 740 (929)
.+.. .....+...+....... ....++.+|++++... .+++.+.+ ||+.++.+++
T Consensus 95 ~~~~---------------~~~~~~~~~i~~~~~~~---~~~~~~~ii~~~~~~~~~~~~~~~~~--r~~~~i~~~~ 151 (151)
T cd00009 95 SLSR---------------GAQNALLRVLETLNDLR---IDRENVRVIGATNRPLLGDLDRALYD--RLDIRIVIPL 151 (151)
T ss_pred hhhH---------------HHHHHHHHHHHhcCcee---ccCCCeEEEEecCccccCCcChhHHh--hhccEeecCC
Confidence 8731 22233444444432210 0012478888888776 67777777 8887777763
No 182
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.05 E-value=4.4e-09 Score=122.34 Aligned_cols=178 Identities=19% Similarity=0.292 Sum_probs=123.4
Q ss_pred CCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccccccCchhhHHHHHHHHHHHH----HhcCCcEEEE
Q 002386 586 HLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEA----LDHAPSIVIF 661 (929)
Q Consensus 586 ~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~~~~~~~~~~~l~~~f~~a----~~~~PsVL~L 661 (929)
+.|+.+-+|||||||-||||||+.+|++.| +.++.+++++-.. ...+...+..+...- ...+|..|++
T Consensus 322 ~RP~kKilLL~GppGlGKTTLAHViAkqaG------YsVvEINASDeRt--~~~v~~kI~~avq~~s~l~adsrP~CLVi 393 (877)
T KOG1969|consen 322 KRPPKKILLLCGPPGLGKTTLAHVIAKQAG------YSVVEINASDERT--APMVKEKIENAVQNHSVLDADSRPVCLVI 393 (877)
T ss_pred CCCccceEEeecCCCCChhHHHHHHHHhcC------ceEEEeccccccc--HHHHHHHHHHHHhhccccccCCCcceEEE
Confidence 456667799999999999999999999998 8899999987543 444455555544432 1257999999
Q ss_pred ccccccccCCCCCCCCCCchhHHHHHHHHHHHHHH--hcccccC----------ccCCCcEEEEEecCCCCccccccccC
Q 002386 662 DNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDE--YGEKRKS----------SCGIGPIAFVASAQSLEKIPQSLTSS 729 (929)
Q Consensus 662 DEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~--~~~~~~~----------~~~~~~VivIattn~~~~L~~~L~~~ 729 (929)
||||--. ......++.++.. .....+. ....-.--||+.||..- -|+|+.-
T Consensus 394 DEIDGa~---------------~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLY--aPaLR~L 456 (877)
T KOG1969|consen 394 DEIDGAP---------------RAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDLY--APALRPL 456 (877)
T ss_pred ecccCCc---------------HHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCcc--chhhhhc
Confidence 9998642 2445555555541 1110000 00000123677778544 4777665
Q ss_pred CCcceEeeCCCCcHHHHHHHHHHHHhhcccccCHHHHHHHHhhcCCCChhhHHHHHHHHHHHH
Q 002386 730 GRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAA 792 (929)
Q Consensus 730 ~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~d~~l~~LA~~teG~s~~DL~~Lv~~A~~~a 792 (929)
.-|...++|.+|......+=|+..+.+.++.++...+..|++.|++ |++.++...-..+
T Consensus 457 r~~A~ii~f~~p~~s~Lv~RL~~IC~rE~mr~d~~aL~~L~el~~~----DIRsCINtLQfLa 515 (877)
T KOG1969|consen 457 RPFAEIIAFVPPSQSRLVERLNEICHRENMRADSKALNALCELTQN----DIRSCINTLQFLA 515 (877)
T ss_pred ccceEEEEecCCChhHHHHHHHHHHhhhcCCCCHHHHHHHHHHhcc----hHHHHHHHHHHHH
Confidence 5678899999999999888899888889999999999999998776 7777665554333
No 183
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=1.2e-08 Score=123.97 Aligned_cols=144 Identities=17% Similarity=0.290 Sum_probs=100.1
Q ss_pred ceEEEECCCCcHHHHHHHHHHHHhccCc----cceeeEEEEeccccc--cCchhhHHHHHHHHHHHHH-hcCCcEEEEcc
Q 002386 591 GHILIHGPPGSGKTSLAKAVAKSLEHHK----DLVAHIVFVCCSRLS--LEKGPIIRQALSNFISEAL-DHAPSIVIFDN 663 (929)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~L~~~~----~~~~~~~~V~~s~L~--~~~~~~~~~~l~~~f~~a~-~~~PsVL~LDE 663 (929)
++-+|.|.||+|||.++.-+|+...... .....++.++...+. ....++++..++.+..++. ...+.||||||
T Consensus 209 ~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfige 288 (898)
T KOG1051|consen 209 NNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGSLVAGAKRRGEFEERLKELLKEVESGGGGVILFLGE 288 (898)
T ss_pred CCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhhhcccCcccchHHHHHHHHHHHHHhcCCCcEEEEecc
Confidence 5689999999999999999999986542 123566777776555 4556888999999999887 45677999999
Q ss_pred ccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCCCcEEEEEecCCCC-----ccccccccCCCcceEeeC
Q 002386 664 LDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLE-----KIPQSLTSSGRFDFHVQL 738 (929)
Q Consensus 664 iD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~VivIattn~~~-----~L~~~L~~~~Rf~~~i~l 738 (929)
++.+.+.... .+ .....+.|...+.. +.+.+|+||.... .-+|+|-+ ||+ .+.+
T Consensus 289 lh~lvg~g~~-~~------~~d~~nlLkp~L~r-----------g~l~~IGatT~e~Y~k~iekdPalEr--rw~-l~~v 347 (898)
T KOG1051|consen 289 LHWLVGSGSN-YG------AIDAANLLKPLLAR-----------GGLWCIGATTLETYRKCIEKDPALER--RWQ-LVLV 347 (898)
T ss_pred eeeeecCCCc-ch------HHHHHHhhHHHHhc-----------CCeEEEecccHHHHHHHHhhCcchhh--Ccc-eeEe
Confidence 9999853222 10 12333333333321 2488899877422 24789988 999 5678
Q ss_pred CCCcHHHHHHHHHHHHh
Q 002386 739 PAPAASERKAILEHEIQ 755 (929)
Q Consensus 739 ~~Pd~~eR~~IL~~~l~ 755 (929)
+.|+.+....||...-.
T Consensus 348 ~~pS~~~~~~iL~~l~~ 364 (898)
T KOG1051|consen 348 PIPSVENLSLILPGLSE 364 (898)
T ss_pred ccCcccchhhhhhhhhh
Confidence 88888776667665443
No 184
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=98.98 E-value=4.4e-09 Score=107.34 Aligned_cols=162 Identities=20% Similarity=0.291 Sum_probs=110.7
Q ss_pred eEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccccccCchhhHHHHHHHHHHHHHhcCC---cEEEEccccccc
Q 002386 592 HILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAP---SIVIFDNLDSII 668 (929)
Q Consensus 592 ~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~~~~~~~~~~~l~~~f~~a~~~~P---sVL~LDEiD~L~ 668 (929)
+++|.||||+||||-+.++|++|- .....-.+..++.++-.| .+.++..++..-+.--...| .|++|||+|++.
T Consensus 50 ~liisGpPG~GKTTsi~~LAr~LL-G~~~ke~vLELNASdeRG--IDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT 126 (333)
T KOG0991|consen 50 NLIISGPPGTGKTTSILCLARELL-GDSYKEAVLELNASDERG--IDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMT 126 (333)
T ss_pred ceEeeCCCCCchhhHHHHHHHHHh-ChhhhhHhhhccCccccc--cHHHHHHHHHHHHhhccCCCCceeEEEeeccchhh
Confidence 599999999999999999999984 222223466677766443 45566666654333322222 499999999985
Q ss_pred cCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCCCcEEEEEecCCCCccccccccCCCcceEeeCCCCcHHHHHH
Q 002386 669 SSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKA 748 (929)
Q Consensus 669 ~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~VivIattn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~ 748 (929)
. .-.+.|.+.|+-+... ..|..++|..+.+=+.+.+ |.. .+.+...+..+...
T Consensus 127 ~---------------gAQQAlRRtMEiyS~t---------tRFalaCN~s~KIiEPIQS--RCA-iLRysklsd~qiL~ 179 (333)
T KOG0991|consen 127 A---------------GAQQALRRTMEIYSNT---------TRFALACNQSEKIIEPIQS--RCA-ILRYSKLSDQQILK 179 (333)
T ss_pred h---------------HHHHHHHHHHHHHccc---------chhhhhhcchhhhhhhHHh--hhH-hhhhcccCHHHHHH
Confidence 2 3345677788776643 4677788888888777887 655 45666666666655
Q ss_pred HHHHHHhhcccccCHHHHHHHHhhcCCCChhhHHH
Q 002386 749 ILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEI 783 (929)
Q Consensus 749 IL~~~l~~~~~~~~d~~l~~LA~~teG~s~~DL~~ 783 (929)
-|....+..++..+++.++.+....+|-....|.+
T Consensus 180 Rl~~v~k~Ekv~yt~dgLeaiifta~GDMRQalNn 214 (333)
T KOG0991|consen 180 RLLEVAKAEKVNYTDDGLEAIIFTAQGDMRQALNN 214 (333)
T ss_pred HHHHHHHHhCCCCCcchHHHhhhhccchHHHHHHH
Confidence 55555666678888888888888777744433333
No 185
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=98.97 E-value=6e-09 Score=116.76 Aligned_cols=200 Identities=16% Similarity=0.121 Sum_probs=119.9
Q ss_pred ccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccccccCc
Q 002386 557 SWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEK 636 (929)
Q Consensus 557 ~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~~~~ 636 (929)
.|....++++.+.+..+... ..+|||+|++||||+++|+++....... ..+|+.++|..+....
T Consensus 2 iG~S~~m~~~~~~~~~~a~~-------------~~pVLI~GE~GtGK~~lAr~iH~~s~r~---~~pfv~vnc~~~~~~~ 65 (329)
T TIGR02974 2 IGESNAFLEVLEQVSRLAPL-------------DRPVLIIGERGTGKELIAARLHYLSKRW---QGPLVKLNCAALSENL 65 (329)
T ss_pred CcCCHHHHHHHHHHHHHhCC-------------CCCEEEECCCCChHHHHHHHHHHhcCcc---CCCeEEEeCCCCChHH
Confidence 45667777787777654332 3679999999999999999998764322 2689999998765322
Q ss_pred hhhH-----HHHH-------HHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhc--cccc
Q 002386 637 GPII-----RQAL-------SNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG--EKRK 702 (929)
Q Consensus 637 ~~~~-----~~~l-------~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~--~~~~ 702 (929)
.+.. ...+ ..+|..| ...+|||||++.|-. .+...|.+.++... ....
T Consensus 66 l~~~lfG~~~g~~~ga~~~~~G~~~~a---~gGtL~Ldei~~L~~---------------~~Q~~Ll~~l~~~~~~~~g~ 127 (329)
T TIGR02974 66 LDSELFGHEAGAFTGAQKRHQGRFERA---DGGTLFLDELATASL---------------LVQEKLLRVIEYGEFERVGG 127 (329)
T ss_pred HHHHHhccccccccCcccccCCchhhC---CCCEEEeCChHhCCH---------------HHHHHHHHHHHcCcEEecCC
Confidence 1110 0000 0112222 356999999999842 34444555554321 1000
Q ss_pred CccCCCcEEEEEecCCC-------CccccccccCCCcc-eEeeCCCCc--HHHHHHHHHHHHhh------cc--cccCHH
Q 002386 703 SSCGIGPIAFVASAQSL-------EKIPQSLTSSGRFD-FHVQLPAPA--ASERKAILEHEIQR------RS--LECSDE 764 (929)
Q Consensus 703 ~~~~~~~VivIattn~~-------~~L~~~L~~~~Rf~-~~i~l~~Pd--~~eR~~IL~~~l~~------~~--~~~~d~ 764 (929)
......++.+|++++.. ..+.+.|.. |+. ..|.+|+.. .++...+++.++.+ .. ..++++
T Consensus 128 ~~~~~~~~RiI~at~~~l~~~~~~g~fr~dL~~--rl~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~ 205 (329)
T TIGR02974 128 SQTLQVDVRLVCATNADLPALAAEGRFRADLLD--RLAFDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQ 205 (329)
T ss_pred CceeccceEEEEechhhHHHHhhcCchHHHHHH--HhcchhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHH
Confidence 01111357888888652 123344444 553 345555553 23344455554432 12 357889
Q ss_pred HHHHHHhhcCCCChhhHHHHHHHHHHHH
Q 002386 765 ILLDVASKCDGYDAYDLEILVDRTVHAA 792 (929)
Q Consensus 765 ~l~~LA~~teG~s~~DL~~Lv~~A~~~a 792 (929)
.+..|.....-.+.++|++++++++..+
T Consensus 206 a~~~L~~y~WPGNvrEL~n~i~~~~~~~ 233 (329)
T TIGR02974 206 AREQLLEYHWPGNVRELKNVVERSVYRH 233 (329)
T ss_pred HHHHHHhCCCCchHHHHHHHHHHHHHhC
Confidence 9999999887778899999999987644
No 186
>PRK13531 regulatory ATPase RavA; Provisional
Probab=98.97 E-value=5.1e-09 Score=120.13 Aligned_cols=141 Identities=13% Similarity=0.176 Sum_probs=79.0
Q ss_pred CCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEec-----cccccCc-hhhHHHHHHHHHHHHHhc---CCcEE
Q 002386 589 LPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC-----SRLSLEK-GPIIRQALSNFISEALDH---APSIV 659 (929)
Q Consensus 589 ~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~-----s~L~~~~-~~~~~~~l~~~f~~a~~~---~PsVL 659 (929)
.++++||+||||||||++|+++++.+.... +|.++.| +++.|.. ...... ...|.....+ ...+|
T Consensus 38 ag~hVLL~GpPGTGKT~LAraLa~~~~~~~----~F~~~~~~fttp~DLfG~l~i~~~~~--~g~f~r~~~G~L~~A~lL 111 (498)
T PRK13531 38 SGESVFLLGPPGIAKSLIARRLKFAFQNAR----AFEYLMTRFSTPEEVFGPLSIQALKD--EGRYQRLTSGYLPEAEIV 111 (498)
T ss_pred cCCCEEEECCCChhHHHHHHHHHHHhcccC----cceeeeeeecCcHHhcCcHHHhhhhh--cCchhhhcCCccccccEE
Confidence 347899999999999999999999875321 2333333 2333321 111000 1112111111 23499
Q ss_pred EEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccC-ccCCCcEEEEEecCCCCc---cccccccCCCcceE
Q 002386 660 IFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKS-SCGIGPIAFVASAQSLEK---IPQSLTSSGRFDFH 735 (929)
Q Consensus 660 ~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~-~~~~~~VivIattn~~~~---L~~~L~~~~Rf~~~ 735 (929)
|+||+..+. ......|+..|.+..-+... .......++++++|.... ..+++.. ||...
T Consensus 112 fLDEI~ras---------------p~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~LPE~g~~leAL~D--RFlir 174 (498)
T PRK13531 112 FLDEIWKAG---------------PAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNELPEADSSLEALYD--RMLIR 174 (498)
T ss_pred eecccccCC---------------HHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCCCcccCCchHHhHh--hEEEE
Confidence 999997664 25666777777543311111 111112344444563221 2237777 99889
Q ss_pred eeCCCCc-HHHHHHHHHH
Q 002386 736 VQLPAPA-ASERKAILEH 752 (929)
Q Consensus 736 i~l~~Pd-~~eR~~IL~~ 752 (929)
+.+++|+ .++-.+|+..
T Consensus 175 i~vp~l~~~~~e~~lL~~ 192 (498)
T PRK13531 175 LWLDKVQDKANFRSMLTS 192 (498)
T ss_pred EECCCCCchHHHHHHHHc
Confidence 9999997 4665777765
No 187
>PRK04132 replication factor C small subunit; Provisional
Probab=98.96 E-value=7.4e-09 Score=126.81 Aligned_cols=166 Identities=18% Similarity=0.186 Sum_probs=123.6
Q ss_pred eEEEEC--CCCcHHHHHHHHHHHHhccCccceeeEEEEeccccccCchhhHHHHHHHHHHHHHhc--CCcEEEEcccccc
Q 002386 592 HILIHG--PPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDH--APSIVIFDNLDSI 667 (929)
Q Consensus 592 ~vLL~G--ppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~~~~~~~~~~~l~~~f~~a~~~--~PsVL~LDEiD~L 667 (929)
+-+..| |++.||||+|+++|+++... .....++.+|+++..+ .+.++..+.......... ...|+||||+|.+
T Consensus 566 ~~~~~G~lPh~lGKTT~A~ala~~l~g~-~~~~~~lElNASd~rg--id~IR~iIk~~a~~~~~~~~~~KVvIIDEaD~L 642 (846)
T PRK04132 566 HNFIGGNLPTVLHNTTAALALARELFGE-NWRHNFLELNASDERG--INVIREKVKEFARTKPIGGASFKIIFLDEADAL 642 (846)
T ss_pred hhhhcCCCCCcccHHHHHHHHHHhhhcc-cccCeEEEEeCCCccc--HHHHHHHHHHHHhcCCcCCCCCEEEEEECcccC
Confidence 467789 99999999999999997321 1226789999987543 445565555443322211 2359999999998
Q ss_pred ccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCCCcEEEEEecCCCCccccccccCCCcceEeeCCCCcHHHHH
Q 002386 668 ISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERK 747 (929)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~VivIattn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~ 747 (929)
.. .-.+.|+..|+.+.. .+.||++||.+..+.+.+++ |+. .+.|++|+.++..
T Consensus 643 t~---------------~AQnALLk~lEep~~---------~~~FILi~N~~~kIi~tIrS--RC~-~i~F~~ls~~~i~ 695 (846)
T PRK04132 643 TQ---------------DAQQALRRTMEMFSS---------NVRFILSCNYSSKIIEPIQS--RCA-IFRFRPLRDEDIA 695 (846)
T ss_pred CH---------------HHHHHHHHHhhCCCC---------CeEEEEEeCChhhCchHHhh--hce-EEeCCCCCHHHHH
Confidence 52 345678888887543 47889999999999999999 765 8899999999999
Q ss_pred HHHHHHHhhcccccCHHHHHHHHhhcCCCChhhHHHHHHHH
Q 002386 748 AILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRT 788 (929)
Q Consensus 748 ~IL~~~l~~~~~~~~d~~l~~LA~~teG~s~~DL~~Lv~~A 788 (929)
+.|+..+.+.++.++++.+..++..+.|-. +..-++++.+
T Consensus 696 ~~L~~I~~~Egi~i~~e~L~~Ia~~s~GDl-R~AIn~Lq~~ 735 (846)
T PRK04132 696 KRLRYIAENEGLELTEEGLQAILYIAEGDM-RRAINILQAA 735 (846)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHcCCCH-HHHHHHHHHH
Confidence 999988887788889999999999998833 3333444443
No 188
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.95 E-value=2e-08 Score=113.19 Aligned_cols=189 Identities=20% Similarity=0.227 Sum_probs=118.7
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccc-ee--------
Q 002386 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL-VA-------- 622 (929)
Q Consensus 552 ~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~-~~-------- 622 (929)
.+..+.|++.+.+.+...+.. ...+..+||+||+|+|||++|+.+|+.+...... ..
T Consensus 21 ~~~~l~Gh~~a~~~L~~a~~~--------------grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~ 86 (351)
T PRK09112 21 ENTRLFGHEEAEAFLAQAYRE--------------GKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPD 86 (351)
T ss_pred chhhccCcHHHHHHHHHHHHc--------------CCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCC
Confidence 466788899888887774421 2233569999999999999999999998652100 00
Q ss_pred ---------------eEEEEecc-ccc------cCchhhHHHHHHHHHHH-HHhcCCcEEEEccccccccCCCCCCCCCC
Q 002386 623 ---------------HIVFVCCS-RLS------LEKGPIIRQALSNFISE-ALDHAPSIVIFDNLDSIISSSSDPEGSQP 679 (929)
Q Consensus 623 ---------------~~~~V~~s-~L~------~~~~~~~~~~l~~~f~~-a~~~~PsVL~LDEiD~L~~~~~~~~~~~~ 679 (929)
.+.++... +-. .-.+++++... +.|.. +......|++|||+|.+-.
T Consensus 87 ~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~-~~l~~~~~~g~~rVviIDeAd~l~~---------- 155 (351)
T PRK09112 87 PASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVG-HFLSQTSGDGNWRIVIIDPADDMNR---------- 155 (351)
T ss_pred CCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHH-HHhhhccccCCceEEEEEchhhcCH----------
Confidence 01111110 000 11134444332 33332 3334556999999999842
Q ss_pred chhHHHHHHHHHHHHHHhcccccCccCCCcEEEEEecCCCCccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhhccc
Q 002386 680 STSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSL 759 (929)
Q Consensus 680 ~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~VivIattn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~ 759 (929)
.-.+.|+..+++... +..+|..++.++.+.+.+++ |+. .++|++|+.++..++|+......+
T Consensus 156 -----~aanaLLk~LEEpp~---------~~~fiLit~~~~~llptIrS--Rc~-~i~l~pl~~~~~~~~L~~~~~~~~- 217 (351)
T PRK09112 156 -----NAANAILKTLEEPPA---------RALFILISHSSGRLLPTIRS--RCQ-PISLKPLDDDELKKALSHLGSSQG- 217 (351)
T ss_pred -----HHHHHHHHHHhcCCC---------CceEEEEECChhhccHHHHh--hcc-EEEecCCCHHHHHHHHHHhhcccC-
Confidence 334557777776432 24555556677888899988 774 899999999999999987432222
Q ss_pred ccCHHHHHHHHhhcCCCChhhHHHHH
Q 002386 760 ECSDEILLDVASKCDGYDAYDLEILV 785 (929)
Q Consensus 760 ~~~d~~l~~LA~~teG~s~~DL~~Lv 785 (929)
+++..+..++..+.| +++....++
T Consensus 218 -~~~~~~~~i~~~s~G-~pr~Al~ll 241 (351)
T PRK09112 218 -SDGEITEALLQRSKG-SVRKALLLL 241 (351)
T ss_pred -CCHHHHHHHHHHcCC-CHHHHHHHH
Confidence 567778888887777 444333333
No 189
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=98.94 E-value=7.6e-09 Score=115.37 Aligned_cols=80 Identities=16% Similarity=0.282 Sum_probs=57.2
Q ss_pred cEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhc----ccccCccCCCcEEEEEecCCCC-ccccccccCCC
Q 002386 657 SIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG----EKRKSSCGIGPIAFVASAQSLE-KIPQSLTSSGR 731 (929)
Q Consensus 657 sVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~----~~~~~~~~~~~VivIattn~~~-~L~~~L~~~~R 731 (929)
.+||+||++.+- ..+...|.+.|++-. ..........++++++|+|..+ .++++|.. |
T Consensus 130 GiL~lDEInrl~---------------~~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLld--R 192 (334)
T PRK13407 130 GYLYIDEVNLLE---------------DHIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLD--R 192 (334)
T ss_pred CeEEecChHhCC---------------HHHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHh--h
Confidence 599999999874 256667777776432 0000011123689999988755 58888988 9
Q ss_pred cceEeeCCCCcH-HHHHHHHHHH
Q 002386 732 FDFHVQLPAPAA-SERKAILEHE 753 (929)
Q Consensus 732 f~~~i~l~~Pd~-~eR~~IL~~~ 753 (929)
|...+.+++|.. ++|.+|++..
T Consensus 193 F~~~v~v~~~~~~~e~~~il~~~ 215 (334)
T PRK13407 193 FGLSVEVRSPRDVETRVEVIRRR 215 (334)
T ss_pred cceEEEcCCCCcHHHHHHHHHHh
Confidence 999999998877 8899999864
No 190
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=98.94 E-value=1.1e-08 Score=114.47 Aligned_cols=140 Identities=17% Similarity=0.160 Sum_probs=85.9
Q ss_pred CcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhc----ccccCccCCCcEEEEEecCCCC-ccccccccCC
Q 002386 656 PSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG----EKRKSSCGIGPIAFVASAQSLE-KIPQSLTSSG 730 (929)
Q Consensus 656 PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~----~~~~~~~~~~~VivIattn~~~-~L~~~L~~~~ 730 (929)
..+|||||++.+-+ .+...|...|+.-. ..........++++++|.|..+ .++++|..
T Consensus 132 ~GvL~lDEi~~L~~---------------~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~Lld-- 194 (337)
T TIGR02030 132 RGILYIDEVNLLED---------------HLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLD-- 194 (337)
T ss_pred CCEEEecChHhCCH---------------HHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHh--
Confidence 46999999998742 45566666665421 0000001112588889888655 68899999
Q ss_pred CcceEeeCCCCcH-HHHHHHHHHHHhh-----------------------------cccccCHHHHHHHHh---hcCCCC
Q 002386 731 RFDFHVQLPAPAA-SERKAILEHEIQR-----------------------------RSLECSDEILLDVAS---KCDGYD 777 (929)
Q Consensus 731 Rf~~~i~l~~Pd~-~eR~~IL~~~l~~-----------------------------~~~~~~d~~l~~LA~---~teG~s 777 (929)
||...+.++.|+. ++|.+|++..... ....++++.+.+++. .+..-+
T Consensus 195 Rf~l~i~l~~p~~~eer~eIL~~~~~~~~~~~~~~~~~~~e~~~~~~~I~~a~~~~~~V~v~d~~~~~i~~l~~~~~~~s 274 (337)
T TIGR02030 195 RFGLHAEIRTVRDVELRVEIVERRTEYDADPHAFCEKWQTEQEALQAKIVNAQNLLPQVTIPYDVLVKVAELCAELDVDG 274 (337)
T ss_pred hcceEEECCCCCCHHHHHHHHHhhhhcccCchhhhhhhhhhhhcCHHHHHHHHHHhccCcCCHHHHHHHHHHHHHHCCCC
Confidence 9999999999976 8888998873221 122355555444433 333334
Q ss_pred hhhHHHHHHHHHHHHhhccccCCccccccccccccccccccccccc
Q 002386 778 AYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEF 823 (929)
Q Consensus 778 ~~DL~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~lt~edf~~al~~~ 823 (929)
++.-..+++.|.-.|..+ ++..++.+|+..+..-.
T Consensus 275 ~Ra~i~l~raArA~Aal~-----------GR~~V~~dDv~~~a~~v 309 (337)
T TIGR02030 275 LRGELTLNRAAKALAAFE-----------GRTEVTVDDIRRVAVLA 309 (337)
T ss_pred CcHHHHHHHHHHHHHHHc-----------CCCCCCHHHHHHHHHHH
Confidence 455555555555445443 44678889988765443
No 191
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=98.93 E-value=1.8e-08 Score=113.08 Aligned_cols=199 Identities=16% Similarity=0.144 Sum_probs=122.8
Q ss_pred cccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccccc
Q 002386 554 SSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLS 633 (929)
Q Consensus 554 ~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~ 633 (929)
.++.|.+..++++.+.+..+... +.+|||+|++||||+++|+++...... ...+|+.++|..+.
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a~~-------------~~pVlI~GE~GtGK~~lA~~iH~~s~r---~~~pfv~v~c~~~~ 69 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLAPL-------------DKPVLIIGERGTGKELIASRLHYLSSR---WQGPFISLNCAALN 69 (326)
T ss_pred CccEECCHHHHHHHHHHHHHhCC-------------CCCEEEECCCCCcHHHHHHHHHHhCCc---cCCCeEEEeCCCCC
Confidence 46778888899999887655432 367999999999999999999864321 12689999999864
Q ss_pred cCchhhHHHHH---------------HHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhc
Q 002386 634 LEKGPIIRQAL---------------SNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG 698 (929)
Q Consensus 634 ~~~~~~~~~~l---------------~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~ 698 (929)
... ....+ ...+.. .....|||||+|.|.. .+...|.+.++.-.
T Consensus 70 ~~~---~~~~lfg~~~~~~~g~~~~~~g~l~~---a~gGtL~l~~i~~L~~---------------~~Q~~L~~~l~~~~ 128 (326)
T PRK11608 70 ENL---LDSELFGHEAGAFTGAQKRHPGRFER---ADGGTLFLDELATAPM---------------LVQEKLLRVIEYGE 128 (326)
T ss_pred HHH---HHHHHccccccccCCcccccCCchhc---cCCCeEEeCChhhCCH---------------HHHHHHHHHHhcCc
Confidence 211 11110 011222 2356899999999852 34444555554321
Q ss_pred cc--ccCccCCCcEEEEEecCCC-------CccccccccCCCcc-eEeeCCCCcH--HHHHHHHHHHHhh----cc----
Q 002386 699 EK--RKSSCGIGPIAFVASAQSL-------EKIPQSLTSSGRFD-FHVQLPAPAA--SERKAILEHEIQR----RS---- 758 (929)
Q Consensus 699 ~~--~~~~~~~~~VivIattn~~-------~~L~~~L~~~~Rf~-~~i~l~~Pd~--~eR~~IL~~~l~~----~~---- 758 (929)
-. .........+.+|++++.. ..+.+.|.. ||. ..|.+|+... ++...++.+++.. .+
T Consensus 129 ~~~~g~~~~~~~~~RiI~~s~~~l~~l~~~g~f~~dL~~--~l~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~ 206 (326)
T PRK11608 129 LERVGGSQPLQVNVRLVCATNADLPAMVAEGKFRADLLD--RLAFDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLF 206 (326)
T ss_pred EEeCCCCceeeccEEEEEeCchhHHHHHHcCCchHHHHH--hcCCCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCC
Confidence 00 0000111247888887652 234455554 553 4566665533 2334455555432 12
Q ss_pred cccCHHHHHHHHhhcCCCChhhHHHHHHHHHHH
Q 002386 759 LECSDEILLDVASKCDGYDAYDLEILVDRTVHA 791 (929)
Q Consensus 759 ~~~~d~~l~~LA~~teG~s~~DL~~Lv~~A~~~ 791 (929)
..++++.+..|.....-.+-++|++++++++..
T Consensus 207 ~~~s~~al~~L~~y~WPGNvrEL~~vl~~a~~~ 239 (326)
T PRK11608 207 PGFTERARETLLNYRWPGNIRELKNVVERSVYR 239 (326)
T ss_pred CCCCHHHHHHHHhCCCCcHHHHHHHHHHHHHHh
Confidence 247888899999988777889999999998753
No 192
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.92 E-value=2.3e-08 Score=111.68 Aligned_cols=182 Identities=15% Similarity=0.154 Sum_probs=115.4
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCcc--ceeeEEEEec
Q 002386 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKD--LVAHIVFVCC 629 (929)
Q Consensus 552 ~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~--~~~~~~~V~~ 629 (929)
+++++.|++.+++.+.+.+.. ...+..+||+||+|+|||++|+++|+.+..... ....+..+..
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~--------------~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~ 67 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIK--------------NRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKP 67 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHc--------------CCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecc
Confidence 356778888888877765421 223356899999999999999999998753211 1112223322
Q ss_pred cccccCchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCCCc
Q 002386 630 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (929)
Q Consensus 630 s~L~~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (929)
.+-..-..+.++..+..+...+......|++||++|.+-. .-.+.|+..+++... +
T Consensus 68 ~~~~~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~~---------------~a~naLLK~LEepp~---------~ 123 (313)
T PRK05564 68 INKKSIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMTE---------------QAQNAFLKTIEEPPK---------G 123 (313)
T ss_pred ccCCCCCHHHHHHHHHHHhcCcccCCceEEEEechhhcCH---------------HHHHHHHHHhcCCCC---------C
Confidence 1111122344444443332223334456999999988741 345667777776432 3
Q ss_pred EEEEEecCCCCccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhhcccccCHHHHHHHHhhcCCCCh
Q 002386 710 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDA 778 (929)
Q Consensus 710 VivIattn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~d~~l~~LA~~teG~s~ 778 (929)
+.+|.+|+.++.+.+.+++ |.. .++|++|+.++....+...+. .++++.+..++..+.|-.+
T Consensus 124 t~~il~~~~~~~ll~TI~S--Rc~-~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~l~~~~~g~~~ 185 (313)
T PRK05564 124 VFIILLCENLEQILDTIKS--RCQ-IYKLNRLSKEEIEKFISYKYN----DIKEEEKKSAIAFSDGIPG 185 (313)
T ss_pred eEEEEEeCChHhCcHHHHh--hce-eeeCCCcCHHHHHHHHHHHhc----CCCHHHHHHHHHHcCCCHH
Confidence 5666666778899999999 765 889999999998887765432 3456667777777766433
No 193
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=98.92 E-value=1.6e-08 Score=112.96 Aligned_cols=172 Identities=16% Similarity=0.199 Sum_probs=100.0
Q ss_pred cccccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccce-eeEE---
Q 002386 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLV-AHIV--- 625 (929)
Q Consensus 550 ~~~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~-~~~~--- 625 (929)
...|..+.|++..+..+.-.+ .. |..+++||.|++|||||++||++++.+....... .+|.
T Consensus 13 ~~pf~~ivGq~~~k~al~~~~---~~------------p~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p 77 (350)
T CHL00081 13 VFPFTAIVGQEEMKLALILNV---ID------------PKIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHP 77 (350)
T ss_pred CCCHHHHhChHHHHHHHHHhc---cC------------CCCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCC
Confidence 345678888987776665421 11 2346899999999999999999998875321100 0010
Q ss_pred ---EEeccccccC-------------------chhhHHHH------HHHHHHHHH---------hcCCcEEEEccccccc
Q 002386 626 ---FVCCSRLSLE-------------------KGPIIRQA------LSNFISEAL---------DHAPSIVIFDNLDSII 668 (929)
Q Consensus 626 ---~V~~s~L~~~-------------------~~~~~~~~------l~~~f~~a~---------~~~PsVL~LDEiD~L~ 668 (929)
...|+.+.+. ..+..... +...|..+. .....+||+||++.+-
T Consensus 78 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~ 157 (350)
T CHL00081 78 SDPELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLD 157 (350)
T ss_pred CChhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCC
Confidence 0000000000 00001110 111111111 1124699999999885
Q ss_pred cCCCCCCCCCCchhHHHHHHHHHHHHHHhcc----cccCccCCCcEEEEEecCCCC-ccccccccCCCcceEeeCCCCc-
Q 002386 669 SSSSDPEGSQPSTSVIALTKFLVDIMDEYGE----KRKSSCGIGPIAFVASAQSLE-KIPQSLTSSGRFDFHVQLPAPA- 742 (929)
Q Consensus 669 ~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~----~~~~~~~~~~VivIattn~~~-~L~~~L~~~~Rf~~~i~l~~Pd- 742 (929)
+ .+...|++.|+.-.. .........++++++|.|..+ .+++.|.. ||...+.+..|+
T Consensus 158 ~---------------~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~Lld--Rf~l~i~l~~~~~ 220 (350)
T CHL00081 158 D---------------HLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGMHAEIRTVKD 220 (350)
T ss_pred H---------------HHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHH--HhCceeecCCCCC
Confidence 2 455556666654210 000011123688888888755 68999999 999999999997
Q ss_pred HHHHHHHHHHH
Q 002386 743 ASERKAILEHE 753 (929)
Q Consensus 743 ~~eR~~IL~~~ 753 (929)
.+.+.+|++..
T Consensus 221 ~~~e~~il~~~ 231 (350)
T CHL00081 221 PELRVKIVEQR 231 (350)
T ss_pred hHHHHHHHHhh
Confidence 58999999874
No 194
>CHL00206 ycf2 Ycf2; Provisional
Probab=98.92 E-value=8.1e-10 Score=140.05 Aligned_cols=57 Identities=23% Similarity=0.300 Sum_probs=51.5
Q ss_pred cCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHcCCceEEEecccccccc
Q 002386 862 LPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKY 918 (929)
Q Consensus 862 ~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~glnfIsVkg~ELl~ky 918 (929)
.|....+.+.+.|+++++||||+||||||||+||+|+|++++++||+|.|++++++|
T Consensus 1614 ~~s~~kP~slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~ 1670 (2281)
T CHL00206 1614 FPSHGKPFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNK 1670 (2281)
T ss_pred CcccCcCHHHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcc
Confidence 344456677888999999999999999999999999999999999999999999887
No 195
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.91 E-value=3.1e-08 Score=112.21 Aligned_cols=180 Identities=18% Similarity=0.198 Sum_probs=114.5
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccc-----------
Q 002386 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL----------- 620 (929)
Q Consensus 552 ~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~----------- 620 (929)
.+.++.|++.+++.+.+.+.. ...+..+||+||+|+||+++|.++|+.+-.....
T Consensus 17 ~~~~iiGq~~~~~~L~~~~~~--------------~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~ 82 (365)
T PRK07471 17 ETTALFGHAAAEAALLDAYRS--------------GRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTS 82 (365)
T ss_pred chhhccChHHHHHHHHHHHHc--------------CCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCcccccccc
Confidence 467888999888888774421 2234569999999999999999999998543210
Q ss_pred -----------------eeeEEEEecc--ccc-----cCchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCC
Q 002386 621 -----------------VAHIVFVCCS--RLS-----LEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEG 676 (929)
Q Consensus 621 -----------------~~~~~~V~~s--~L~-----~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~ 676 (929)
...+.++... +-. .-.+++++.....+-..+....+.|++|||+|.+-.
T Consensus 83 l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~------- 155 (365)
T PRK07471 83 LAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNA------- 155 (365)
T ss_pred ccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCH-------
Confidence 0012222110 100 012344444333322223345678999999998741
Q ss_pred CCCchhHHHHHHHHHHHHHHhcccccCccCCCcEEEEEecCCCCccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhh
Q 002386 677 SQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQR 756 (929)
Q Consensus 677 ~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~VivIattn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~ 756 (929)
.-.+.|+..+++... ..++|.+|+.++.+.+.+++ |+. .+.|++|+.++..+++....
T Consensus 156 --------~aanaLLK~LEepp~---------~~~~IL~t~~~~~llpti~S--Rc~-~i~l~~l~~~~i~~~L~~~~-- 213 (365)
T PRK07471 156 --------NAANALLKVLEEPPA---------RSLFLLVSHAPARLLPTIRS--RCR-KLRLRPLAPEDVIDALAAAG-- 213 (365)
T ss_pred --------HHHHHHHHHHhcCCC---------CeEEEEEECCchhchHHhhc--cce-EEECCCCCHHHHHHHHHHhc--
Confidence 445567677766432 35677778888888888888 765 88999999999988887643
Q ss_pred cccccCHHHHHHHHhhcCCC
Q 002386 757 RSLECSDEILLDVASKCDGY 776 (929)
Q Consensus 757 ~~~~~~d~~l~~LA~~teG~ 776 (929)
....+..+..++..+.|-
T Consensus 214 --~~~~~~~~~~l~~~s~Gs 231 (365)
T PRK07471 214 --PDLPDDPRAALAALAEGS 231 (365)
T ss_pred --ccCCHHHHHHHHHHcCCC
Confidence 223334445667776663
No 196
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.89 E-value=2.6e-08 Score=121.96 Aligned_cols=139 Identities=19% Similarity=0.187 Sum_probs=91.7
Q ss_pred CceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccc------cccCch-----hhHHHHHHHHHHHHHhcCCcE
Q 002386 590 PGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSR------LSLEKG-----PIIRQALSNFISEALDHAPSI 658 (929)
Q Consensus 590 ~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~------L~~~~~-----~~~~~~l~~~f~~a~~~~PsV 658 (929)
.+++||.|.||+|||+|+.++|+..+ ..++.++.++ |.|... |+. ++.+.--.+..+.+..
T Consensus 1543 ~kpilLEGsPGVGKTSlItaLAr~tG------~kliRINLSeQTdL~DLfGsd~Pve~~Gef--~w~dapfL~amr~G~W 1614 (4600)
T COG5271 1543 GKPILLEGSPGVGKTSLITALARKTG------KKLIRINLSEQTDLCDLFGSDLPVEEGGEF--RWMDAPFLHAMRDGGW 1614 (4600)
T ss_pred CCceeecCCCCccHHHHHHHHHHHhc------CceEEeeccccchHHHHhCCCCCcccCcee--EecccHHHHHhhcCCE
Confidence 36799999999999999999999998 5667777653 222221 221 1222211222345679
Q ss_pred EEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccc-----ccCccCCCcEEEEEecCCCC------ccccccc
Q 002386 659 VIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEK-----RKSSCGIGPIAFVASAQSLE------KIPQSLT 727 (929)
Q Consensus 659 L~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~-----~~~~~~~~~VivIattn~~~------~L~~~L~ 727 (929)
++|||+.... +.+++-|..++|..... ......+.++.|+||-|+.+ .||.++.
T Consensus 1615 VlLDEiNLaS---------------QSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~ 1679 (4600)
T COG5271 1615 VLLDEINLAS---------------QSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFL 1679 (4600)
T ss_pred EEeehhhhhH---------------HHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHh
Confidence 9999995432 47788888888864321 11122335678888887744 4888888
Q ss_pred cCCCcceEeeCCCCcHHHHHHHHHHHH
Q 002386 728 SSGRFDFHVQLPAPAASERKAILEHEI 754 (929)
Q Consensus 728 ~~~Rf~~~i~l~~Pd~~eR~~IL~~~l 754 (929)
. ||. ++.+...+.+....|..+..
T Consensus 1680 n--RFs-vV~~d~lt~dDi~~Ia~~~y 1703 (4600)
T COG5271 1680 N--RFS-VVKMDGLTTDDITHIANKMY 1703 (4600)
T ss_pred h--hhh-eEEecccccchHHHHHHhhC
Confidence 8 998 67777777777777666543
No 197
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=4.5e-08 Score=104.43 Aligned_cols=199 Identities=22% Similarity=0.280 Sum_probs=127.0
Q ss_pred ceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccccc--cCchhhHHHHHHHHHHHHHh----cCCcEEEEccc
Q 002386 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLS--LEKGPIIRQALSNFISEALD----HAPSIVIFDNL 664 (929)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~--~~~~~~~~~~l~~~f~~a~~----~~PsVL~LDEi 664 (929)
.++||.||.|||||.||+.+|+.|. .+|..-|+..|. |.-.++.+..+..+++.|.. .+..|++|||+
T Consensus 98 SNILLiGPTGsGKTlLAqTLAk~Ln------VPFaiADATtLTEAGYVGEDVENillkLlqaadydV~rAerGIIyIDEI 171 (408)
T COG1219 98 SNILLIGPTGSGKTLLAQTLAKILN------VPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVERAERGIIYIDEI 171 (408)
T ss_pred ccEEEECCCCCcHHHHHHHHHHHhC------CCeeeccccchhhccccchhHHHHHHHHHHHcccCHHHHhCCeEEEech
Confidence 5699999999999999999999998 888888888887 33335567777777776643 35679999999
Q ss_pred cccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCcc------------CCCcEEEEEecCC--------------
Q 002386 665 DSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSC------------GIGPIAFVASAQS-------------- 718 (929)
Q Consensus 665 D~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~------------~~~~VivIattn~-------------- 718 (929)
|.+...+..+.-.. .-+...+.+.|+..+++-...-.... ...+++||+...-
T Consensus 172 DKIarkSeN~SITR-DVSGEGVQQALLKiiEGTvasVPPqGGRKHP~Qe~iqvDT~NILFIcgGAF~GlekiI~~R~~~~ 250 (408)
T COG1219 172 DKIARKSENPSITR-DVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEFIQVDTSNILFICGGAFAGLEKIIKKRLGKK 250 (408)
T ss_pred hhhhccCCCCCccc-ccCchHHHHHHHHHHcCceeccCCCCCCCCCccceEEEcccceeEEeccccccHHHHHHHhccCC
Confidence 99986443322111 11234677788888876432111000 0124555533110
Q ss_pred --------C-----Cc--------cccccccC-------CCcceEeeCCCCcHHHHHHHHHH-----------HHh--hc
Q 002386 719 --------L-----EK--------IPQSLTSS-------GRFDFHVQLPAPAASERKAILEH-----------EIQ--RR 757 (929)
Q Consensus 719 --------~-----~~--------L~~~L~~~-------~Rf~~~i~l~~Pd~~eR~~IL~~-----------~l~--~~ 757 (929)
. .. .+..|..- ||+..+..+...|.+...+||.. ++. ..
T Consensus 251 ~iGF~a~~~~~~~~~~~~~~l~~vepeDLvkFGLIPEfIGRlPvia~L~~Lde~aLv~ILtePkNAlvKQYq~Lf~~d~V 330 (408)
T COG1219 251 GIGFGAEVKSKSKKKEEGELLKQVEPEDLVKFGLIPEFIGRLPVIATLEELDEDALVQILTEPKNALVKQYQKLFEMDGV 330 (408)
T ss_pred cccccccccchhhhhhHHHHHHhcChHHHHHcCCcHHHhcccceeeehhhcCHHHHHHHHhcccHHHHHHHHHHhcccCc
Confidence 0 00 11222221 48888889999999999988762 111 12
Q ss_pred ccccCHHHHHHHHhhc--CCCChhhHHHHHHHHHHHHhhcc
Q 002386 758 SLECSDEILLDVASKC--DGYDAYDLEILVDRTVHAAVGRY 796 (929)
Q Consensus 758 ~~~~~d~~l~~LA~~t--eG~s~~DL~~Lv~~A~~~a~~r~ 796 (929)
.+.+.++.+..+|... .+-.++-|+.++++.+...+...
T Consensus 331 ~L~F~~~AL~~IA~~A~~rkTGARGLRsI~E~~lld~Mfel 371 (408)
T COG1219 331 ELEFTEEALKAIAKKAIERKTGARGLRSIIEELLLDVMFEL 371 (408)
T ss_pred eEEEcHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhhC
Confidence 3557788888888764 33346678888888777666653
No 198
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.87 E-value=5.8e-08 Score=108.56 Aligned_cols=158 Identities=17% Similarity=0.252 Sum_probs=107.1
Q ss_pred CceEEEECCCCcHHHHHHHHHHHHhccCccc------------------eeeEEEEecccc-ccCchhhHHHHHHHHHHH
Q 002386 590 PGHILIHGPPGSGKTSLAKAVAKSLEHHKDL------------------VAHIVFVCCSRL-SLEKGPIIRQALSNFISE 650 (929)
Q Consensus 590 ~~~vLL~GppGtGKTtLaralA~~L~~~~~~------------------~~~~~~V~~s~L-~~~~~~~~~~~l~~~f~~ 650 (929)
+..+||+||+|+|||++|+++|+.+...... ...+..+....- ..-.++.++..+..+...
T Consensus 22 ~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~l~~~~~~~ 101 (328)
T PRK05707 22 PHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRELVSFVVQT 101 (328)
T ss_pred ceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHHHHHHHhhc
Confidence 4569999999999999999999998743110 012333322211 112456666655554444
Q ss_pred HHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCCCcEEEEEecCCCCccccccccCC
Q 002386 651 ALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSG 730 (929)
Q Consensus 651 a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~VivIattn~~~~L~~~L~~~~ 730 (929)
+......|++||++|.+-. .-.+.|+..+++... ++.+|.+|+.++.+.+.++|
T Consensus 102 ~~~~~~kv~iI~~a~~m~~---------------~aaNaLLK~LEEPp~---------~~~fiL~t~~~~~ll~TI~S-- 155 (328)
T PRK05707 102 AQLGGRKVVLIEPAEAMNR---------------NAANALLKSLEEPSG---------DTVLLLISHQPSRLLPTIKS-- 155 (328)
T ss_pred cccCCCeEEEECChhhCCH---------------HHHHHHHHHHhCCCC---------CeEEEEEECChhhCcHHHHh--
Confidence 4445567999999999852 456777777877442 47888888999999999999
Q ss_pred CcceEeeCCCCcHHHHHHHHHHHHhhcccccCHHHHHHHHhhcCCCCh
Q 002386 731 RFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDA 778 (929)
Q Consensus 731 Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~d~~l~~LA~~teG~s~ 778 (929)
|.. .+.|++|+.++..+.|..... ..+++....++....|-..
T Consensus 156 Rc~-~~~~~~~~~~~~~~~L~~~~~----~~~~~~~~~~l~la~Gsp~ 198 (328)
T PRK05707 156 RCQ-QQACPLPSNEESLQWLQQALP----ESDERERIELLTLAGGSPL 198 (328)
T ss_pred hce-eeeCCCcCHHHHHHHHHHhcc----cCChHHHHHHHHHcCCCHH
Confidence 877 689999999998888775431 2344445566666666433
No 199
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=98.86 E-value=6.4e-09 Score=105.48 Aligned_cols=123 Identities=20% Similarity=0.286 Sum_probs=80.7
Q ss_pred CceEEEECCCCcHHHHHHHHHHHHhcc-CccceeeEEEEeccccccCchhhHHHHHHHHHHHH----HhcCCcEEEEccc
Q 002386 590 PGHILIHGPPGSGKTSLAKAVAKSLEH-HKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEA----LDHAPSIVIFDNL 664 (929)
Q Consensus 590 ~~~vLL~GppGtGKTtLaralA~~L~~-~~~~~~~~~~V~~s~L~~~~~~~~~~~l~~~f~~a----~~~~PsVL~LDEi 664 (929)
-..+||+||+|||||.+|+++|+.+.. .. .+++.++|+.+.. .++....+..++..+ ......||||||+
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~~~~---~~~~~~d~s~~~~--~~~~~~~~~~l~~~~~~~v~~~~~gVVllDEi 77 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFVGSE---RPLIRIDMSEYSE--GDDVESSVSKLLGSPPGYVGAEEGGVVLLDEI 77 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT-SSC---CEEEEEEGGGHCS--HHHCSCHCHHHHHHTTCHHHHHHHTEEEEETG
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhccCCc---cchHHHhhhcccc--cchHHhhhhhhhhcccceeeccchhhhhhHHH
Confidence 357999999999999999999999972 22 5899999999886 111111122222211 1122249999999
Q ss_pred cccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccc--ccCccCCCcEEEEEecCCCCc
Q 002386 665 DSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEK--RKSSCGIGPIAFVASAQSLEK 721 (929)
Q Consensus 665 D~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~--~~~~~~~~~VivIattn~~~~ 721 (929)
|.+.+. ...........+.+.|+..+++-.-. ........+++||+|+|-...
T Consensus 78 dKa~~~----~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~~ 132 (171)
T PF07724_consen 78 DKAHPS----NSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGAE 132 (171)
T ss_dssp GGCSHT----TTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSSTH
T ss_pred hhcccc----ccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEecccccc
Confidence 999853 22223334568888999999864422 112344568999999986554
No 200
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=98.86 E-value=2.6e-08 Score=119.38 Aligned_cols=201 Identities=17% Similarity=0.169 Sum_probs=125.4
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccc
Q 002386 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSR 631 (929)
Q Consensus 552 ~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~ 631 (929)
.+..+.|.+..++++.+.+..+... ..+|||+|++||||+++|++|....... ..+|+.++|..
T Consensus 194 ~~~~liG~s~~~~~~~~~~~~~a~~-------------~~pvli~Ge~GtGK~~lA~~ih~~s~r~---~~pfv~i~c~~ 257 (534)
T TIGR01817 194 KEDGIIGKSPAMRQVVDQARVVARS-------------NSTVLLRGESGTGKELIAKAIHYLSPRA---KRPFVKVNCAA 257 (534)
T ss_pred ccCceEECCHHHHHHHHHHHHHhCc-------------CCCEEEECCCCccHHHHHHHHHHhCCCC---CCCeEEeecCC
Confidence 4567889999999999887655432 3579999999999999999999875322 26899999988
Q ss_pred cccCchhhHHHHH-H--------------HHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHH
Q 002386 632 LSLEKGPIIRQAL-S--------------NFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDE 696 (929)
Q Consensus 632 L~~~~~~~~~~~l-~--------------~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~ 696 (929)
+..... +..+ . .+|.. ..+.+|||||+|.|-. .+...|...++.
T Consensus 258 ~~~~~~---~~~lfg~~~~~~~~~~~~~~g~~~~---a~~GtL~ldei~~L~~---------------~~Q~~Ll~~l~~ 316 (534)
T TIGR01817 258 LSETLL---ESELFGHEKGAFTGAIAQRKGRFEL---ADGGTLFLDEIGEISP---------------AFQAKLLRVLQE 316 (534)
T ss_pred CCHHHH---HHHHcCCCCCccCCCCcCCCCcccc---cCCCeEEEechhhCCH---------------HHHHHHHHHHhc
Confidence 743221 1100 0 01111 2356999999999852 344445555543
Q ss_pred hccc--ccCccCCCcEEEEEecCCCC-------ccccccccCCCcc-eEeeCCCCc--HHHHHHHHHHHHhhc------c
Q 002386 697 YGEK--RKSSCGIGPIAFVASAQSLE-------KIPQSLTSSGRFD-FHVQLPAPA--ASERKAILEHEIQRR------S 758 (929)
Q Consensus 697 ~~~~--~~~~~~~~~VivIattn~~~-------~L~~~L~~~~Rf~-~~i~l~~Pd--~~eR~~IL~~~l~~~------~ 758 (929)
-.-. .........+.+|++++..- .+.+.|.. |+. ..|.+|+.. .++...+++.++.+. .
T Consensus 317 ~~~~~~~~~~~~~~~~riI~~s~~~l~~~~~~~~f~~~L~~--rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~ 394 (534)
T TIGR01817 317 GEFERVGGNRTLKVDVRLVAATNRDLEEAVAKGEFRADLYY--RINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRP 394 (534)
T ss_pred CcEEECCCCceEeecEEEEEeCCCCHHHHHHcCCCCHHHHH--HhcCCeeeCCCcccccccHHHHHHHHHHHHHHHcCCC
Confidence 2110 00000112478888876421 12222222 332 356666654 244555666665431 2
Q ss_pred cccCHHHHHHHHhhcCCCChhhHHHHHHHHHHH
Q 002386 759 LECSDEILLDVASKCDGYDAYDLEILVDRTVHA 791 (929)
Q Consensus 759 ~~~~d~~l~~LA~~teG~s~~DL~~Lv~~A~~~ 791 (929)
..++++.+..|.....-.+.++|++++++|+..
T Consensus 395 ~~~s~~a~~~L~~~~WPGNvrEL~~v~~~a~~~ 427 (534)
T TIGR01817 395 LTITPSAIRVLMSCKWPGNVRELENCLERTATL 427 (534)
T ss_pred CCCCHHHHHHHHhCCCCChHHHHHHHHHHHHHh
Confidence 468899999999988777889999999998753
No 201
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.85 E-value=3e-08 Score=95.17 Aligned_cols=76 Identities=30% Similarity=0.441 Sum_probs=57.1
Q ss_pred CceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccccccCc--------------hhhHHHHHHHHHHHHHhcC
Q 002386 590 PGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEK--------------GPIIRQALSNFISEALDHA 655 (929)
Q Consensus 590 ~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~~~~--------------~~~~~~~l~~~f~~a~~~~ 655 (929)
+.+++|+||||||||++++.+|..+.... ..+++++++...... .......+...+..+....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPG---GGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLK 78 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCC---CCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcC
Confidence 35799999999999999999999987432 247788877544321 1223445667778887777
Q ss_pred CcEEEEccccccc
Q 002386 656 PSIVIFDNLDSII 668 (929)
Q Consensus 656 PsVL~LDEiD~L~ 668 (929)
+.+||+||++.+.
T Consensus 79 ~~viiiDei~~~~ 91 (148)
T smart00382 79 PDVLILDEITSLL 91 (148)
T ss_pred CCEEEEECCcccC
Confidence 8999999999886
No 202
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=98.85 E-value=2.6e-09 Score=129.85 Aligned_cols=88 Identities=26% Similarity=0.579 Sum_probs=81.4
Q ss_pred CCccCCCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHcCCceEEEeccccccccc
Q 002386 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYI 919 (929)
Q Consensus 840 ~~~w~dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~glnfIsVkg~ELl~kyI 919 (929)
...|.|+.|++.+++.+.+.+++ .+.+..|...+.+.+.|+||+||||||||++|+++|++++.+|+.++++++..+|+
T Consensus 148 ~~~~~di~g~~~~~~~l~~i~~~-~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~ 226 (644)
T PRK10733 148 KTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFV 226 (644)
T ss_pred hCcHHHHcCHHHHHHHHHHHHHH-hhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhh
Confidence 46799999999999999999987 46677788888888999999999999999999999999999999999999999999
Q ss_pred ChhhHHHhh
Q 002386 920 GASEQAVRR 928 (929)
Q Consensus 920 G~SEq~VRd 928 (929)
|.++..+|+
T Consensus 227 g~~~~~~~~ 235 (644)
T PRK10733 227 GVGASRVRD 235 (644)
T ss_pred cccHHHHHH
Confidence 999999885
No 203
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=98.84 E-value=9e-09 Score=115.76 Aligned_cols=137 Identities=24% Similarity=0.344 Sum_probs=90.5
Q ss_pred CceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccccc------cCchhhHHHHHHHHHHHHHhc-----CC--
Q 002386 590 PGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLS------LEKGPIIRQALSNFISEALDH-----AP-- 656 (929)
Q Consensus 590 ~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~------~~~~~~~~~~l~~~f~~a~~~-----~P-- 656 (929)
.+++||-|+||||||++|+.+|+.++ ..+..+.|..-. |.+.-.... .. ...-.+. ..
T Consensus 43 ~~~vll~G~PG~gKT~la~~lA~~l~------~~~~~i~~t~~l~p~d~~G~~~~~~~~--~~-~~~~~~~~gpl~~~~~ 113 (329)
T COG0714 43 GGHVLLEGPPGVGKTLLARALARALG------LPFVRIQCTPDLLPSDLLGTYAYAALL--LE-PGEFRFVPGPLFAAVR 113 (329)
T ss_pred CCCEEEECCCCccHHHHHHHHHHHhC------CCeEEEecCCCCCHHHhcCchhHhhhh--cc-CCeEEEecCCcccccc
Confidence 37899999999999999999999998 778888886432 222211110 00 0000000 11
Q ss_pred cEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccC---ccCCCcEEEEEecC-----CCCcccccccc
Q 002386 657 SIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKS---SCGIGPIAFVASAQ-----SLEKIPQSLTS 728 (929)
Q Consensus 657 sVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~---~~~~~~VivIattn-----~~~~L~~~L~~ 728 (929)
.++++|||+...+ .+...|+..|++..-.... ..-..++++++|.| ....+++++++
T Consensus 114 ~ill~DEInra~p---------------~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ld 178 (329)
T COG0714 114 VILLLDEINRAPP---------------EVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLD 178 (329)
T ss_pred eEEEEeccccCCH---------------HHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHh
Confidence 3999999988642 6777888888874422211 11224688999999 45568999999
Q ss_pred CCCcceEeeCCCC-cHHHHHHHHHH
Q 002386 729 SGRFDFHVQLPAP-AASERKAILEH 752 (929)
Q Consensus 729 ~~Rf~~~i~l~~P-d~~eR~~IL~~ 752 (929)
||...++++.| +..+...++..
T Consensus 179 --Rf~~~~~v~yp~~~~e~~~i~~~ 201 (329)
T COG0714 179 --RFLLRIYVDYPDSEEEERIILAR 201 (329)
T ss_pred --hEEEEEecCCCCchHHHHHHHHh
Confidence 99888999999 55555555444
No 204
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=6.5e-08 Score=106.81 Aligned_cols=197 Identities=21% Similarity=0.293 Sum_probs=129.0
Q ss_pred ceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccccc--cCchhhHHHHHHHHHHHHH----hcCCcEEEEccc
Q 002386 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLS--LEKGPIIRQALSNFISEAL----DHAPSIVIFDNL 664 (929)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~--~~~~~~~~~~l~~~f~~a~----~~~PsVL~LDEi 664 (929)
.+|||.||+|+|||.||+.+|+-+. .+|...||..|. |.-.++++..+..++..|. ..+..|+||||+
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~ld------VPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEv 300 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVLD------VPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEV 300 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHhC------CCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehh
Confidence 5699999999999999999999998 899999999887 3333556777777777763 346679999999
Q ss_pred cccccCCCCCCCCCCchhHHHHHHHHHHHHHHhc----ccccCccCC--------CcEEEEEecCC--------------
Q 002386 665 DSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG----EKRKSSCGI--------GPIAFVASAQS-------------- 718 (929)
Q Consensus 665 D~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~----~~~~~~~~~--------~~VivIattn~-------------- 718 (929)
|.|... .+.-+....-.-..+.+.|+.++++-. .+......+ .+|+||+.-.-
T Consensus 301 DKi~~~-~~~i~~~RDVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnILFiasGAF~~Ldk~I~rR~~d~ 379 (564)
T KOG0745|consen 301 DKITKK-AESIHTSRDVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNILFIASGAFVGLDKIISRRLDDK 379 (564)
T ss_pred hhhccc-CccccccccccchhHHHHHHHHhcccEEcccCCCCCCCCCCCeEEEeccceEEEecccccchHHHHHHhhcch
Confidence 999731 111111111123466677777776432 111100111 24666654210
Q ss_pred ------C------------Ccc------------------------ccccccCCCcceEeeCCCCcHHHHHHHHHH----
Q 002386 719 ------L------------EKI------------------------PQSLTSSGRFDFHVQLPAPAASERKAILEH---- 752 (929)
Q Consensus 719 ------~------------~~L------------------------~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~---- 752 (929)
+ ..+ =|.|. |||...+.|...+.++..++|..
T Consensus 380 slGFg~~s~~~vr~~~~~~s~~~~~~~~~~~lL~~~~~~DLisfGmIPEfV--GRfPVlVplh~L~~~~Lv~VLtEPkna 457 (564)
T KOG0745|consen 380 SLGFGAPSSKGVRANMATKSGVENDAEKRDELLEKVESGDLISFGMIPEFV--GRFPVLVPLHSLDEDQLVRVLTEPKNA 457 (564)
T ss_pred hcccCCCCCccchhhcccccCcchhHHHHHHHHhhccccchhhhcCcHHHh--cccceEeeccccCHHHHHHHHhcchhh
Confidence 0 000 01122 59999999999999999988762
Q ss_pred -------HHh--hcccccCHHHHHHHHhhc--CCCChhhHHHHHHHHHHHHhhcc
Q 002386 753 -------EIQ--RRSLECSDEILLDVASKC--DGYDAYDLEILVDRTVHAAVGRY 796 (929)
Q Consensus 753 -------~l~--~~~~~~~d~~l~~LA~~t--eG~s~~DL~~Lv~~A~~~a~~r~ 796 (929)
++. ...+.+++..++.+|+.. .+--++.|+.+++.+...+....
T Consensus 458 L~~Qyk~lf~~~nV~L~fTe~Al~~IAq~Al~r~TGARgLRsIlE~~Lleamfev 512 (564)
T KOG0745|consen 458 LGKQYKKLFGMDNVELHFTEKALEAIAQLALKRKTGARGLRSILESLLLEAMFEV 512 (564)
T ss_pred HHHHHHHHhccCCeeEEecHHHHHHHHHHHHhhccchHHHHHHHHHHHhhhcccC
Confidence 111 123457888888888764 44457789999999988887664
No 205
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=98.83 E-value=1e-07 Score=105.09 Aligned_cols=95 Identities=20% Similarity=0.246 Sum_probs=61.2
Q ss_pred CcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCCCcEEEEEecCC------------CCccc
Q 002386 656 PSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQS------------LEKIP 723 (929)
Q Consensus 656 PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~VivIattn~------------~~~L~ 723 (929)
|.||||||+++|= -..+.+|.+.++.-. .+++++| ||+ ++-+|
T Consensus 279 pGVLFIDEvHmLD---------------iEcFsfLnralEs~~---------sPiiIlA-TNRg~~~irGt~~~sphGiP 333 (398)
T PF06068_consen 279 PGVLFIDEVHMLD---------------IECFSFLNRALESEL---------SPIIILA-TNRGITKIRGTDIISPHGIP 333 (398)
T ss_dssp E-EEEEESGGGSB---------------HHHHHHHHHHHTSTT-----------EEEEE-ES-SEEE-BTTS-EEETT--
T ss_pred cceEEecchhhcc---------------HHHHHHHHHHhcCCC---------CcEEEEe-cCceeeeccCccCcCCCCCC
Confidence 7899999999883 266778888776422 1455554 453 44567
Q ss_pred cccccCCCcceEeeCCCCcHHHHHHHHHHHHhhcccccCHHHHHHHHhhcCCCCh
Q 002386 724 QSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDA 778 (929)
Q Consensus 724 ~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~d~~l~~LA~~teG~s~ 778 (929)
..|+. |+- .|...+++.++..+|++..++..++.++++.+..|+......+-
T Consensus 334 ~DlLD--Rll-II~t~py~~~ei~~Il~iR~~~E~v~i~~~al~~L~~ig~~~SL 385 (398)
T PF06068_consen 334 LDLLD--RLL-IIRTKPYSEEEIKQILKIRAKEEDVEISEDALDLLTKIGVETSL 385 (398)
T ss_dssp HHHHT--TEE-EEEE----HHHHHHHHHHHHHHCT--B-HHHHHHHHHHHHHS-H
T ss_pred cchHh--hcE-EEECCCCCHHHHHHHHHhhhhhhcCcCCHHHHHHHHHHhhhccH
Confidence 77777 765 78999999999999999999999999999988887766544433
No 206
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.83 E-value=3e-08 Score=111.61 Aligned_cols=209 Identities=17% Similarity=0.178 Sum_probs=126.8
Q ss_pred ccccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEecc
Q 002386 551 SNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCS 630 (929)
Q Consensus 551 ~~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s 630 (929)
..+.+++|.+..++++++.++.+- +...+||++|++||||+.+|++|....... ...+|+.+||.
T Consensus 75 ~~~~~LIG~~~~~~~~~eqik~~a-------------p~~~~vLi~GetGtGKel~A~~iH~~s~r~--~~~PFI~~NCa 139 (403)
T COG1221 75 EALDDLIGESPSLQELREQIKAYA-------------PSGLPVLIIGETGTGKELFARLIHALSARR--AEAPFIAFNCA 139 (403)
T ss_pred hhhhhhhccCHHHHHHHHHHHhhC-------------CCCCcEEEecCCCccHHHHHHHHHHhhhcc--cCCCEEEEEHH
Confidence 345688888889999999887632 334679999999999999999999543321 34889999998
Q ss_pred ccccCchhhH-HHHHH-----------HHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhc
Q 002386 631 RLSLEKGPII-RQALS-----------NFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG 698 (929)
Q Consensus 631 ~L~~~~~~~~-~~~l~-----------~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~ 698 (929)
.+........ -..-+ .+|+.| ....|||||+..+-+ .....|...++...
T Consensus 140 ~~~en~~~~eLFG~~kGaftGa~~~k~Glfe~A---~GGtLfLDEI~~LP~---------------~~Q~kLl~~le~g~ 201 (403)
T COG1221 140 AYSENLQEAELFGHEKGAFTGAQGGKAGLFEQA---NGGTLFLDEIHRLPP---------------EGQEKLLRVLEEGE 201 (403)
T ss_pred HhCcCHHHHHHhccccceeecccCCcCchheec---CCCEEehhhhhhCCH---------------hHHHHHHHHHHcCc
Confidence 8765433211 00001 123332 235999999998853 34455666666422
Q ss_pred cc--ccCccCCCcEEEEEecCCCCcccccccc-----CCCcceEeeCCCCcH--HHHHHHHHHHHh----hcccc---cC
Q 002386 699 EK--RKSSCGIGPIAFVASAQSLEKIPQSLTS-----SGRFDFHVQLPAPAA--SERKAILEHEIQ----RRSLE---CS 762 (929)
Q Consensus 699 ~~--~~~~~~~~~VivIattn~~~~L~~~L~~-----~~Rf~~~i~l~~Pd~--~eR~~IL~~~l~----~~~~~---~~ 762 (929)
-. .........|.+|++|+. .++..+.. ..|+...|++|+... +++..++++++. +.+.. .+
T Consensus 202 ~~rvG~~~~~~~dVRli~AT~~--~l~~~~~~g~dl~~rl~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~ 279 (403)
T COG1221 202 YRRVGGSQPRPVDVRLICATTE--DLEEAVLAGADLTRRLNILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDS 279 (403)
T ss_pred eEecCCCCCcCCCceeeecccc--CHHHHHHhhcchhhhhcCceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCC
Confidence 11 111112235888888763 33322222 015555667766543 333444455444 33333 23
Q ss_pred HHHHHHHHhhcCCCChhhHHHHHHHHHHHHhh
Q 002386 763 DEILLDVASKCDGYDAYDLEILVDRTVHAAVG 794 (929)
Q Consensus 763 d~~l~~LA~~teG~s~~DL~~Lv~~A~~~a~~ 794 (929)
++.+..+-....--+-++|++++++++..+..
T Consensus 280 ~~a~~~L~~y~~pGNirELkN~Ve~~~~~~~~ 311 (403)
T COG1221 280 PEALRALLAYDWPGNIRELKNLVERAVAQASG 311 (403)
T ss_pred HHHHHHHHhCCCCCcHHHHHHHHHHHHHHhcc
Confidence 35566666665555788999999999877754
No 207
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.82 E-value=6.3e-09 Score=101.78 Aligned_cols=117 Identities=21% Similarity=0.352 Sum_probs=71.1
Q ss_pred eEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccccc------cCchhh-HHHHH-HHHHHHHHhcCCcEEEEcc
Q 002386 592 HILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLS------LEKGPI-IRQAL-SNFISEALDHAPSIVIFDN 663 (929)
Q Consensus 592 ~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~------~~~~~~-~~~~l-~~~f~~a~~~~PsVL~LDE 663 (929)
+|||+||||||||++|+.+|+.++ ..+..+.|+... +.+.-. ....+ ...+..+ ...+.+++|||
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~------~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a-~~~~~il~lDE 73 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLG------RPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRA-MRKGGILVLDE 73 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHT------CEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTT-HHEEEEEEESS
T ss_pred CEEEECCCCCCHHHHHHHHHHHhh------cceEEEEeccccccccceeeeeeccccccccccccccc-ccceeEEEECC
Confidence 589999999999999999999996 777778776532 111100 00000 0000000 02567999999
Q ss_pred ccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccc---ccCcc-CCC------cEEEEEecCCCC----ccccccccC
Q 002386 664 LDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEK---RKSSC-GIG------PIAFVASAQSLE----KIPQSLTSS 729 (929)
Q Consensus 664 iD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~---~~~~~-~~~------~VivIattn~~~----~L~~~L~~~ 729 (929)
++..- ..+...|..+++...-. ..... ... ++.+|+|+|+.+ .++++|++
T Consensus 74 in~a~---------------~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~- 137 (139)
T PF07728_consen 74 INRAP---------------PEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLD- 137 (139)
T ss_dssp CGG-----------------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHT-
T ss_pred cccCC---------------HHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHh-
Confidence 98763 26777777777753321 00000 011 389999999988 88999998
Q ss_pred CCc
Q 002386 730 GRF 732 (929)
Q Consensus 730 ~Rf 732 (929)
||
T Consensus 138 -Rf 139 (139)
T PF07728_consen 138 -RF 139 (139)
T ss_dssp -T-
T ss_pred -hC
Confidence 76
No 208
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.82 E-value=4e-09 Score=101.45 Aligned_cols=48 Identities=46% Similarity=0.791 Sum_probs=46.4
Q ss_pred eEEecCCCCcHHHHHHHHHHHcCCceEEEecccccccccChhhHHHhh
Q 002386 881 VLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRR 928 (929)
Q Consensus 881 iLLyGpPGtGKT~LA~alA~e~glnfIsVkg~ELl~kyIG~SEq~VRd 928 (929)
+||+||||||||++|+++|+.++.+|+.++++++.+.|.|++++.+++
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~ 48 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRD 48 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhhccccccccccccccccccccccccccc
Confidence 689999999999999999999999999999999999999999999875
No 209
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=98.81 E-value=3.4e-08 Score=111.46 Aligned_cols=210 Identities=19% Similarity=0.221 Sum_probs=130.6
Q ss_pred cccccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEec
Q 002386 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (929)
Q Consensus 550 ~~~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~ 629 (929)
...+.+++|...++.++.+.+..+.... ..|||+|.+||||..+||+|.+.-... ..+|+++||
T Consensus 219 ~~~~~~iIG~S~am~~ll~~i~~VA~Sd-------------~tVLi~GETGtGKElvAraIH~~S~R~---~kPfV~~NC 282 (550)
T COG3604 219 VLEVGGIIGRSPAMRQLLKEIEVVAKSD-------------STVLIRGETGTGKELVARAIHQLSPRR---DKPFVKLNC 282 (550)
T ss_pred hcccccceecCHHHHHHHHHHHHHhcCC-------------CeEEEecCCCccHHHHHHHHHhhCccc---CCCceeeec
Confidence 3456688999999999999988775543 579999999999999999998865433 378999999
Q ss_pred cccccCch-hhHHHHHHHHHHHHHhc--------CCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHH-HHHhcc
Q 002386 630 SRLSLEKG-PIIRQALSNFISEALDH--------APSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDI-MDEYGE 699 (929)
Q Consensus 630 s~L~~~~~-~~~~~~l~~~f~~a~~~--------~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~-ld~~~~ 699 (929)
..+...-. .+.-...+..|.-|... ....||||||..|-. ..+.+++..|... ++...+
T Consensus 283 AAlPesLlESELFGHeKGAFTGA~~~r~GrFElAdGGTLFLDEIGelPL-----------~lQaKLLRvLQegEieRvG~ 351 (550)
T COG3604 283 AALPESLLESELFGHEKGAFTGAINTRRGRFELADGGTLFLDEIGELPL-----------ALQAKLLRVLQEGEIERVGG 351 (550)
T ss_pred cccchHHHHHHHhcccccccccchhccCcceeecCCCeEechhhccCCH-----------HHHHHHHHHHhhcceeecCC
Confidence 87652211 11112222233333221 246999999977631 2223444444321 111222
Q ss_pred cccCccCCCcEEEEEecCCCCccccccccCCCcc-------eEeeCCCCcHHHHHH----HHHHHHh----hc---cccc
Q 002386 700 KRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFD-------FHVQLPAPAASERKA----ILEHEIQ----RR---SLEC 761 (929)
Q Consensus 700 ~~~~~~~~~~VivIattn~~~~L~~~L~~~~Rf~-------~~i~l~~Pd~~eR~~----IL~~~l~----~~---~~~~ 761 (929)
.+ .-...|.+||+||+ +|-..++. |+|. .++-+..|...+|.. +.+++++ +. .+.+
T Consensus 352 ~r---~ikVDVRiIAATNR--DL~~~V~~-G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~l 425 (550)
T COG3604 352 DR---TIKVDVRVIAATNR--DLEEMVRD-GEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSL 425 (550)
T ss_pred Cc---eeEEEEEEEeccch--hHHHHHHc-CcchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCccccc
Confidence 11 12235899999996 33333322 3332 244444444444432 2222332 22 3457
Q ss_pred CHHHHHHHHhhcCCCChhhHHHHHHHHHHHH
Q 002386 762 SDEILLDVASKCDGYDAYDLEILVDRTVHAA 792 (929)
Q Consensus 762 ~d~~l~~LA~~teG~s~~DL~~Lv~~A~~~a 792 (929)
+.+.++.+..+..-.+.++|+++++||+..|
T Consensus 426 s~~Al~~L~~y~wPGNVRELen~veRavlla 456 (550)
T COG3604 426 SAEALELLSSYEWPGNVRELENVVERAVLLA 456 (550)
T ss_pred CHHHHHHHHcCCCCCcHHHHHHHHHHHHHHh
Confidence 8888999998877778899999999999877
No 210
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.81 E-value=4.4e-08 Score=116.56 Aligned_cols=205 Identities=13% Similarity=0.152 Sum_probs=119.9
Q ss_pred ccccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEecc
Q 002386 551 SNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCS 630 (929)
Q Consensus 551 ~~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s 630 (929)
..|+++.|.+..+.++++.+..+... ..+|||+|++||||+++|+++...... ...+|+.++|.
T Consensus 201 ~~f~~~ig~s~~~~~~~~~~~~~A~~-------------~~pvlI~GE~GtGK~~lA~aiH~~s~r---~~~pfv~inca 264 (520)
T PRK10820 201 SAFSQIVAVSPKMRQVVEQARKLAML-------------DAPLLITGDTGTGKDLLAYACHLRSPR---GKKPFLALNCA 264 (520)
T ss_pred ccccceeECCHHHHHHHHHHHHHhCC-------------CCCEEEECCCCccHHHHHHHHHHhCCC---CCCCeEEeccc
Confidence 34667888888888888877544332 256999999999999999998665322 12678999998
Q ss_pred ccccCchhhH-----H-------HHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHh-
Q 002386 631 RLSLEKGPII-----R-------QALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEY- 697 (929)
Q Consensus 631 ~L~~~~~~~~-----~-------~~l~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~- 697 (929)
.+........ . ..-..+|+.| ....|||||+|.+.+ .+...|.+.++.-
T Consensus 265 ~~~~~~~e~elFG~~~~~~~~~~~~~~g~~e~a---~~GtL~LdeI~~L~~---------------~~Q~~Ll~~l~~~~ 326 (520)
T PRK10820 265 SIPDDVVESELFGHAPGAYPNALEGKKGFFEQA---NGGSVLLDEIGEMSP---------------RMQAKLLRFLNDGT 326 (520)
T ss_pred cCCHHHHHHHhcCCCCCCcCCcccCCCChhhhc---CCCEEEEeChhhCCH---------------HHHHHHHHHHhcCC
Confidence 8753211100 0 0000123322 346899999999842 3333444444331
Q ss_pred -cccccCccCCCcEEEEEecCCC-C------ccccccccCCCcc-eEeeCCCCcH--HHHHHHHHHHHh----hcc---c
Q 002386 698 -GEKRKSSCGIGPIAFVASAQSL-E------KIPQSLTSSGRFD-FHVQLPAPAA--SERKAILEHEIQ----RRS---L 759 (929)
Q Consensus 698 -~~~~~~~~~~~~VivIattn~~-~------~L~~~L~~~~Rf~-~~i~l~~Pd~--~eR~~IL~~~l~----~~~---~ 759 (929)
...........++.+|++|+.. . .+.+.|.. |+. ..+++|+... +++..++..++. +.+ .
T Consensus 327 ~~~~g~~~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~--rL~~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~ 404 (520)
T PRK10820 327 FRRVGEDHEVHVDVRVICATQKNLVELVQKGEFREDLYY--RLNVLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRP 404 (520)
T ss_pred cccCCCCcceeeeeEEEEecCCCHHHHHHcCCccHHHHh--hcCeeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCC
Confidence 1110000111257788887642 1 23333443 443 3455555533 223333444433 232 3
Q ss_pred ccCHHHHHHHHhhcCCCChhhHHHHHHHHHHH
Q 002386 760 ECSDEILLDVASKCDGYDAYDLEILVDRTVHA 791 (929)
Q Consensus 760 ~~~d~~l~~LA~~teG~s~~DL~~Lv~~A~~~ 791 (929)
.++++.+..|.....-.+.++|++++.+|+..
T Consensus 405 ~ls~~a~~~L~~y~WPGNvreL~nvl~~a~~~ 436 (520)
T PRK10820 405 KLAADLNTVLTRYGWPGNVRQLKNAIYRALTQ 436 (520)
T ss_pred CcCHHHHHHHhcCCCCCHHHHHHHHHHHHHHh
Confidence 57888899888887777888999999888753
No 211
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.79 E-value=1.2e-07 Score=112.82 Aligned_cols=204 Identities=17% Similarity=0.173 Sum_probs=123.6
Q ss_pred ccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEecccc
Q 002386 553 VSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRL 632 (929)
Q Consensus 553 ~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L 632 (929)
...++|.+..++++.+.+..+... +.+|||+|++||||+++|+++....... ..+++.++|..+
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~a~~-------------~~pVlI~Ge~GtGK~~~A~~ih~~s~r~---~~p~v~v~c~~~ 249 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVVAAS-------------DLNVLILGETGVGKELVARAIHAASPRA---DKPLVYLNCAAL 249 (509)
T ss_pred CCceeecCHHHHHHHHHHHHHhCC-------------CCcEEEECCCCccHHHHHHHHHHhCCcC---CCCeEEEEcccC
Confidence 346778888999999888654332 3679999999999999999999875422 268999999987
Q ss_pred ccCchhhH-----HHHH-------HHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhc--
Q 002386 633 SLEKGPII-----RQAL-------SNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG-- 698 (929)
Q Consensus 633 ~~~~~~~~-----~~~l-------~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~-- 698 (929)
........ ...+ ...|.. ..+..|||||+|.|-. .+...|.+.++.-.
T Consensus 250 ~~~~~e~~lfG~~~g~~~ga~~~~~g~~~~---a~gGtL~ldeI~~L~~---------------~~Q~~Ll~~l~~~~~~ 311 (509)
T PRK05022 250 PESLAESELFGHVKGAFTGAISNRSGKFEL---ADGGTLFLDEIGELPL---------------ALQAKLLRVLQYGEIQ 311 (509)
T ss_pred ChHHHHHHhcCccccccCCCcccCCcchhh---cCCCEEEecChhhCCH---------------HHHHHHHHHHhcCCEe
Confidence 53211100 0000 002322 2356899999999852 33444445554321
Q ss_pred ccccCccCCCcEEEEEecCCCC-------ccccccccCCCcceEeeCCCCcHHHHH----HHHHHHHhh-------cccc
Q 002386 699 EKRKSSCGIGPIAFVASAQSLE-------KIPQSLTSSGRFDFHVQLPAPAASERK----AILEHEIQR-------RSLE 760 (929)
Q Consensus 699 ~~~~~~~~~~~VivIattn~~~-------~L~~~L~~~~Rf~~~i~l~~Pd~~eR~----~IL~~~l~~-------~~~~ 760 (929)
.-.........+.+|++|+..- .+...|.. |+. .+.+..|...+|. .++++++++ ....
T Consensus 312 ~~g~~~~~~~~~RiI~~t~~~l~~~~~~~~f~~dL~~--rl~-~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~ 388 (509)
T PRK05022 312 RVGSDRSLRVDVRVIAATNRDLREEVRAGRFRADLYH--RLS-VFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLR 388 (509)
T ss_pred eCCCCcceecceEEEEecCCCHHHHHHcCCccHHHHh--ccc-ccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCC
Confidence 0000011112578888887531 12233322 332 2334444444443 344444432 2345
Q ss_pred cCHHHHHHHHhhcCCCChhhHHHHHHHHHHHHh
Q 002386 761 CSDEILLDVASKCDGYDAYDLEILVDRTVHAAV 793 (929)
Q Consensus 761 ~~d~~l~~LA~~teG~s~~DL~~Lv~~A~~~a~ 793 (929)
++++.+..|.....-.+.++|++++++|+..+.
T Consensus 389 ~s~~a~~~L~~y~WPGNvrEL~~~i~ra~~~~~ 421 (509)
T PRK05022 389 LSPAAQAALLAYDWPGNVRELEHVISRAALLAR 421 (509)
T ss_pred CCHHHHHHHHhCCCCCcHHHHHHHHHHHHHhcC
Confidence 889999999998888889999999999986554
No 212
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=98.78 E-value=3.2e-08 Score=113.29 Aligned_cols=203 Identities=20% Similarity=0.251 Sum_probs=125.1
Q ss_pred ccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEecccc
Q 002386 553 VSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRL 632 (929)
Q Consensus 553 ~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L 632 (929)
...+.|....++++.+.+..+-... ..|||+|++||||-.+||+|.+.-.... .+|+.+||..+
T Consensus 140 ~~~liG~S~am~~l~~~i~kvA~s~-------------a~VLI~GESGtGKElvAr~IH~~S~R~~---~PFVavNcaAi 203 (464)
T COG2204 140 GGELVGESPAMQQLRRLIAKVAPSD-------------ASVLITGESGTGKELVARAIHQASPRAK---GPFIAVNCAAI 203 (464)
T ss_pred cCCceecCHHHHHHHHHHHHHhCCC-------------CCEEEECCCCCcHHHHHHHHHhhCcccC---CCceeeecccC
Confidence 4577889999999999887654433 5699999999999999999988643222 78999999876
Q ss_pred ccCchhh---------HHHHHH---HHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhc--
Q 002386 633 SLEKGPI---------IRQALS---NFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG-- 698 (929)
Q Consensus 633 ~~~~~~~---------~~~~l~---~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~-- 698 (929)
.....+. ...... -.|+.| ....||||||..+. - .+..-|++.+.+-.
T Consensus 204 p~~l~ESELFGhekGAFTGA~~~r~G~fE~A---~GGTLfLDEI~~mp-----------l----~~Q~kLLRvLqe~~~~ 265 (464)
T COG2204 204 PENLLESELFGHEKGAFTGAITRRIGRFEQA---NGGTLFLDEIGEMP-----------L----ELQVKLLRVLQEREFE 265 (464)
T ss_pred CHHHHHHHhhcccccCcCCcccccCcceeEc---CCceEEeeccccCC-----------H----HHHHHHHHHHHcCeeE
Confidence 5322111 000000 133333 34599999998764 1 33333444444221
Q ss_pred ccccCccCCCcEEEEEecCCCCccccccccCCCcc-------eEeeCCCCcHHHHHH----HHHHHHhh----c---ccc
Q 002386 699 EKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFD-------FHVQLPAPAASERKA----ILEHEIQR----R---SLE 760 (929)
Q Consensus 699 ~~~~~~~~~~~VivIattn~~~~L~~~L~~~~Rf~-------~~i~l~~Pd~~eR~~----IL~~~l~~----~---~~~ 760 (929)
.-..+......|.||++||. +|..... .|+|. .++.+..|...+|.+ ++++++++ . ...
T Consensus 266 rvG~~~~i~vdvRiIaaT~~--dL~~~v~-~G~FReDLyyRLnV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~ 342 (464)
T COG2204 266 RVGGNKPIKVDVRIIAATNR--DLEEEVA-AGRFREDLYYRLNVVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKG 342 (464)
T ss_pred ecCCCcccceeeEEEeecCc--CHHHHHH-cCCcHHHHHhhhccceecCCcccccchhHHHHHHHHHHHHHHHcCCCCCC
Confidence 11111112236899999985 2222221 22332 356677776666654 34444432 2 234
Q ss_pred cCHHHHHHHHhhcCCCChhhHHHHHHHHHHHH
Q 002386 761 CSDEILLDVASKCDGYDAYDLEILVDRTVHAA 792 (929)
Q Consensus 761 ~~d~~l~~LA~~teG~s~~DL~~Lv~~A~~~a 792 (929)
++++.+..+.....-.+-++|++++++++..+
T Consensus 343 ~s~~a~~~L~~y~WPGNVREL~N~ver~~il~ 374 (464)
T COG2204 343 FSPEALAALLAYDWPGNVRELENVVERAVILS 374 (464)
T ss_pred CCHHHHHHHHhCCCChHHHHHHHHHHHHHhcC
Confidence 78888888888776667899999999987543
No 213
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.77 E-value=1.1e-07 Score=117.31 Aligned_cols=204 Identities=15% Similarity=0.183 Sum_probs=122.6
Q ss_pred ccccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEecc
Q 002386 551 SNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCS 630 (929)
Q Consensus 551 ~~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s 630 (929)
..+.++.|.+..++.+.+.+..+... ..+|||+|++|||||++|+++....... ..+++.++|.
T Consensus 373 ~~~~~liG~S~~~~~~~~~~~~~a~~-------------~~pVLI~GE~GTGK~~lA~~ih~~s~r~---~~~~v~i~c~ 436 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQVEMVAQS-------------DSTVLILGETGTGKELIARAIHNLSGRN---NRRMVKMNCA 436 (686)
T ss_pred ccccceeecCHHHHHHHHHHHHHhCC-------------CCCEEEECCCCcCHHHHHHHHHHhcCCC---CCCeEEEecc
Confidence 44567888999999998887654332 2579999999999999999998865322 2689999998
Q ss_pred ccccCchhh-------------HHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHh
Q 002386 631 RLSLEKGPI-------------IRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEY 697 (929)
Q Consensus 631 ~L~~~~~~~-------------~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~ 697 (929)
.+....... ..... ..|+. ..+.+|||||++.+-. .+...|.+.++..
T Consensus 437 ~~~~~~~~~~lfg~~~~~~~g~~~~~~-g~le~---a~~GtL~Ldei~~L~~---------------~~Q~~L~~~l~~~ 497 (686)
T PRK15429 437 AMPAGLLESDLFGHERGAFTGASAQRI-GRFEL---ADKSSLFLDEVGDMPL---------------ELQPKLLRVLQEQ 497 (686)
T ss_pred cCChhHhhhhhcCcccccccccccchh-hHHHh---cCCCeEEEechhhCCH---------------HHHHHHHHHHHhC
Confidence 764211110 00111 12322 2356999999999842 4444555555432
Q ss_pred c--ccccCccCCCcEEEEEecCCCC--c-----cccccccCCCcceEeeCCCCcHHHHH----HHHHHHHhh----cc--
Q 002386 698 G--EKRKSSCGIGPIAFVASAQSLE--K-----IPQSLTSSGRFDFHVQLPAPAASERK----AILEHEIQR----RS-- 758 (929)
Q Consensus 698 ~--~~~~~~~~~~~VivIattn~~~--~-----L~~~L~~~~Rf~~~i~l~~Pd~~eR~----~IL~~~l~~----~~-- 758 (929)
. ..........++.+|++++..- . +...|.. |+. .+.+..|...+|. .+++.++.+ .+
T Consensus 498 ~~~~~g~~~~~~~~~RiI~~t~~~l~~~~~~~~f~~~L~~--~l~-~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~ 574 (686)
T PRK15429 498 EFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYY--RLN-VFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRN 574 (686)
T ss_pred CEEeCCCCCcccceEEEEEeCCCCHHHHHHcCcccHHHHh--ccC-eeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCC
Confidence 1 1000011113578888886531 1 1121211 222 2344444444543 344444432 12
Q ss_pred c-ccCHHHHHHHHhhcCCCChhhHHHHHHHHHHHH
Q 002386 759 L-ECSDEILLDVASKCDGYDAYDLEILVDRTVHAA 792 (929)
Q Consensus 759 ~-~~~d~~l~~LA~~teG~s~~DL~~Lv~~A~~~a 792 (929)
. .++++.+..|.....-.+.++|++++++|+..+
T Consensus 575 ~~~~s~~al~~L~~y~WPGNvrEL~~~i~~a~~~~ 609 (686)
T PRK15429 575 IDSIPAETLRTLSNMEWPGNVRELENVIERAVLLT 609 (686)
T ss_pred CCCcCHHHHHHHHhCCCCCcHHHHHHHHHHHHHhC
Confidence 2 378888999988887778899999999987543
No 214
>PHA02244 ATPase-like protein
Probab=98.77 E-value=5.9e-08 Score=107.97 Aligned_cols=128 Identities=16% Similarity=0.246 Sum_probs=79.1
Q ss_pred ceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEecc----ccccCchhhHHHHHH-HHHHHHHhcCCcEEEEcccc
Q 002386 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCS----RLSLEKGPIIRQALS-NFISEALDHAPSIVIFDNLD 665 (929)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s----~L~~~~~~~~~~~l~-~~f~~a~~~~PsVL~LDEiD 665 (929)
.++||+||||||||++|+++|..++ .+++.+++. .+.+.. .. ...+. .-|..|. ..+.+|+|||++
T Consensus 120 ~PVLL~GppGtGKTtLA~aLA~~lg------~pfv~In~l~d~~~L~G~i-~~-~g~~~dgpLl~A~-~~GgvLiLDEId 190 (383)
T PHA02244 120 IPVFLKGGAGSGKNHIAEQIAEALD------LDFYFMNAIMDEFELKGFI-DA-NGKFHETPFYEAF-KKGGLFFIDEID 190 (383)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhC------CCEEEEecChHHHhhcccc-cc-cccccchHHHHHh-hcCCEEEEeCcC
Confidence 5699999999999999999999987 556666532 111100 00 00111 1122222 456799999999
Q ss_pred ccccCCCCCCCCCCchhHHHHHHHHHHHHHHhc-c-cccCccCCCcEEEEEecCCC-----------CccccccccCCCc
Q 002386 666 SIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG-E-KRKSSCGIGPIAFVASAQSL-----------EKIPQSLTSSGRF 732 (929)
Q Consensus 666 ~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~-~-~~~~~~~~~~VivIattn~~-----------~~L~~~L~~~~Rf 732 (929)
.+.+ .....|...++... . .........++.+|+|+|.. ..+++++++ ||
T Consensus 191 ~a~p---------------~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllD--RF 253 (383)
T PHA02244 191 ASIP---------------EALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLD--RF 253 (383)
T ss_pred cCCH---------------HHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHh--hc
Confidence 8742 33445555554211 0 00011122468999999973 457888888 99
Q ss_pred ceEeeCCCCcHHH
Q 002386 733 DFHVQLPAPAASE 745 (929)
Q Consensus 733 ~~~i~l~~Pd~~e 745 (929)
. ++++..|+..+
T Consensus 254 v-~I~~dyp~~~E 265 (383)
T PHA02244 254 A-PIEFDYDEKIE 265 (383)
T ss_pred E-EeeCCCCcHHH
Confidence 7 78999998433
No 215
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.77 E-value=1.4e-07 Score=105.04 Aligned_cols=187 Identities=14% Similarity=0.136 Sum_probs=115.0
Q ss_pred ccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCcc------------c
Q 002386 553 VSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKD------------L 620 (929)
Q Consensus 553 ~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~------------~ 620 (929)
|.++.|++.+++.+.+.+.. ...+..+||+||+|+||+++|+++|+.+..... .
T Consensus 3 f~~iiGq~~~~~~L~~~i~~--------------~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~ 68 (314)
T PRK07399 3 FANLIGQPLAIELLTAAIKQ--------------NRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGN 68 (314)
T ss_pred HHHhCCHHHHHHHHHHHHHh--------------CCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCC
Confidence 56788898888888775421 222357999999999999999999999854320 0
Q ss_pred eeeEEEEeccccc-cCch---------------hhH-HHHHHHHHHHH----HhcCCcEEEEccccccccCCCCCCCCCC
Q 002386 621 VAHIVFVCCSRLS-LEKG---------------PII-RQALSNFISEA----LDHAPSIVIFDNLDSIISSSSDPEGSQP 679 (929)
Q Consensus 621 ~~~~~~V~~s~L~-~~~~---------------~~~-~~~l~~~f~~a----~~~~PsVL~LDEiD~L~~~~~~~~~~~~ 679 (929)
...+.++.+.... +... ..+ -..++++.+.+ ......|++||++|.+-
T Consensus 69 hPDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~----------- 137 (314)
T PRK07399 69 HPDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMN----------- 137 (314)
T ss_pred CCCEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcC-----------
Confidence 0112223221100 1100 000 01233333333 22345799999999884
Q ss_pred chhHHHHHHHHHHHHHHhcccccCccCCCcEEEEEecCCCCccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhhccc
Q 002386 680 STSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSL 759 (929)
Q Consensus 680 ~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~VivIattn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~ 759 (929)
..-.+.|+..+++.. . .++|..++.++.|.+.+++ |.. .++|++++.++..++|+.......
T Consensus 138 ----~~aaNaLLK~LEEPp-~---------~~fILi~~~~~~Ll~TI~S--Rcq-~i~f~~l~~~~~~~~L~~~~~~~~- 199 (314)
T PRK07399 138 ----EAAANALLKTLEEPG-N---------GTLILIAPSPESLLPTIVS--RCQ-IIPFYRLSDEQLEQVLKRLGDEEI- 199 (314)
T ss_pred ----HHHHHHHHHHHhCCC-C---------CeEEEEECChHhCcHHHHh--hce-EEecCCCCHHHHHHHHHHhhcccc-
Confidence 245567778887754 2 3456666788999999999 765 889999999999999887533211
Q ss_pred ccCHHHHHHHHhhcCCCChhhHHHHH
Q 002386 760 ECSDEILLDVASKCDGYDAYDLEILV 785 (929)
Q Consensus 760 ~~~d~~l~~LA~~teG~s~~DL~~Lv 785 (929)
.+.....++....| ++++...++
T Consensus 200 --~~~~~~~l~~~a~G-s~~~al~~l 222 (314)
T PRK07399 200 --LNINFPELLALAQG-SPGAAIANI 222 (314)
T ss_pred --chhHHHHHHHHcCC-CHHHHHHHH
Confidence 11224566776666 444433333
No 216
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=98.77 E-value=7.9e-08 Score=116.92 Aligned_cols=142 Identities=20% Similarity=0.265 Sum_probs=85.3
Q ss_pred ceEEEECCCCcHHHHHHHHHHHHhcc-----------Cc------------------cceeeEEEEeccccccCchhh--
Q 002386 591 GHILIHGPPGSGKTSLAKAVAKSLEH-----------HK------------------DLVAHIVFVCCSRLSLEKGPI-- 639 (929)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~L~~-----------~~------------------~~~~~~~~V~~s~L~~~~~~~-- 639 (929)
++|||.|++|||||++||++++.+.. .. ....+|+.+.++.....-+|.
T Consensus 26 g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d 105 (633)
T TIGR02442 26 GGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEEWCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLD 105 (633)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccccChhhhhcccccccCCCCeeeCCCCCcHHHcCCccc
Confidence 67999999999999999999998731 00 001345555444221111111
Q ss_pred HHHHHH--------HHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhc----ccccCccCC
Q 002386 640 IRQALS--------NFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG----EKRKSSCGI 707 (929)
Q Consensus 640 ~~~~l~--------~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~----~~~~~~~~~ 707 (929)
+...+. ..+.. ....+|||||++.+-+ .+...|+..|+.-. .........
T Consensus 106 ~~~~l~~g~~~~~~G~L~~---A~~GiL~lDEi~~l~~---------------~~q~~Ll~~le~g~~~v~r~g~~~~~~ 167 (633)
T TIGR02442 106 IERALREGEKAFQPGLLAE---AHRGILYIDEVNLLDD---------------HLVDVLLDAAAMGVNRVEREGLSVSHP 167 (633)
T ss_pred HHHHhhcCCeeecCcceee---cCCCeEEeChhhhCCH---------------HHHHHHHHHHhcCCEEEEECCceeeec
Confidence 111110 01111 1235999999999852 55666777776421 111001112
Q ss_pred CcEEEEEecCCC-CccccccccCCCcceEeeCCCCc-HHHHHHHHHH
Q 002386 708 GPIAFVASAQSL-EKIPQSLTSSGRFDFHVQLPAPA-ASERKAILEH 752 (929)
Q Consensus 708 ~~VivIattn~~-~~L~~~L~~~~Rf~~~i~l~~Pd-~~eR~~IL~~ 752 (929)
.++.+|+|+|.. ..+++.|.. ||...+.++.+. .+++.++++.
T Consensus 168 ~~~~lIat~np~eg~l~~~L~d--R~~l~i~v~~~~~~~~~~~il~~ 212 (633)
T TIGR02442 168 ARFVLIGTMNPEEGDLRPQLLD--RFGLCVDVAAPRDPEERVEIIRR 212 (633)
T ss_pred CCeEEEEecCCCCCCCCHHHHh--hcceEEEccCCCchHHHHHHHHH
Confidence 358999998864 368888988 999888888774 5777777765
No 217
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=98.75 E-value=5.1e-08 Score=111.53 Aligned_cols=207 Identities=14% Similarity=0.181 Sum_probs=124.4
Q ss_pred cccccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEec
Q 002386 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (929)
Q Consensus 550 ~~~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~ 629 (929)
..+++++.|....+.++++..+..-. .+..|||.|.+||||..+|+++.+.-.. ...+|+.+||
T Consensus 241 ~y~f~~Iig~S~~m~~~~~~akr~A~-------------tdstVLi~GESGTGKElfA~~IH~~S~R---~~~PFIaiNC 304 (560)
T COG3829 241 KYTFDDIIGESPAMLRVLELAKRIAK-------------TDSTVLILGESGTGKELFARAIHNLSPR---ANGPFIAINC 304 (560)
T ss_pred ccchhhhccCCHHHHHHHHHHHhhcC-------------CCCcEEEecCCCccHHHHHHHHHhcCcc---cCCCeEEEec
Confidence 34677888888888888876654433 3367999999999999999999875432 3378999999
Q ss_pred cccccCchhh-HHHHHHHHHHHHHhc---------CCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhc-
Q 002386 630 SRLSLEKGPI-IRQALSNFISEALDH---------APSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG- 698 (929)
Q Consensus 630 s~L~~~~~~~-~~~~l~~~f~~a~~~---------~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~- 698 (929)
..+...-.+. .-..-...|.-|... ...-||||||..+- -.+..-|++.+.+..
T Consensus 305 aAiPe~LlESELFGye~GAFTGA~~~GK~GlfE~A~gGTLFLDEIgemp---------------l~LQaKLLRVLQEkei 369 (560)
T COG3829 305 AAIPETLLESELFGYEKGAFTGASKGGKPGLFELANGGTLFLDEIGEMP---------------LPLQAKLLRVLQEKEI 369 (560)
T ss_pred ccCCHHHHHHHHhCcCCccccccccCCCCcceeeccCCeEEehhhccCC---------------HHHHHHHHHHHhhceE
Confidence 7653211110 000111122223221 23489999997763 144445555555422
Q ss_pred -ccccCccCCCcEEEEEecCCCCccccccccCCCcc-------eEeeCCCCcHHHHHH----HHHHHHhh----c--cc-
Q 002386 699 -EKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFD-------FHVQLPAPAASERKA----ILEHEIQR----R--SL- 759 (929)
Q Consensus 699 -~~~~~~~~~~~VivIattn~~~~L~~~L~~~~Rf~-------~~i~l~~Pd~~eR~~----IL~~~l~~----~--~~- 759 (929)
.-.........|.+||+||. .+-.++ ..|+|. .++.+..|...+|.+ +...++++ . ..
T Consensus 370 ~rvG~t~~~~vDVRIIAATN~--nL~~~i-~~G~FReDLYYRLNV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~ 446 (560)
T COG3829 370 ERVGGTKPIPVDVRIIAATNR--NLEKMI-AEGTFREDLYYRLNVIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVK 446 (560)
T ss_pred EecCCCCceeeEEEEEeccCc--CHHHHH-hcCcchhhheeeeceeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCcc
Confidence 11111122236999999996 222222 223332 245555555555543 33333332 1 22
Q ss_pred ccCHHHHHHHHhhcCCCChhhHHHHHHHHHH
Q 002386 760 ECSDEILLDVASKCDGYDAYDLEILVDRTVH 790 (929)
Q Consensus 760 ~~~d~~l~~LA~~teG~s~~DL~~Lv~~A~~ 790 (929)
.++++.+..|.+...-.+-++|++++++++.
T Consensus 447 ~ls~~a~~~L~~y~WPGNVRELeNviER~v~ 477 (560)
T COG3829 447 GLSPDALALLLRYDWPGNVRELENVIERAVN 477 (560)
T ss_pred cCCHHHHHHHHhCCCCchHHHHHHHHHHHHh
Confidence 2788888888888777788999999999875
No 218
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.74 E-value=3e-07 Score=99.62 Aligned_cols=196 Identities=17% Similarity=0.208 Sum_probs=117.0
Q ss_pred ceEEEECCCCcHHHHHHHHHHHHhccCc---cceeeEEEEeccccccC----------------chhhHHHHHHHHHHHH
Q 002386 591 GHILIHGPPGSGKTSLAKAVAKSLEHHK---DLVAHIVFVCCSRLSLE----------------KGPIIRQALSNFISEA 651 (929)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~L~~~~---~~~~~~~~V~~s~L~~~----------------~~~~~~~~l~~~f~~a 651 (929)
.++||+|++|.|||++++.+++.-.... ....+++++.+..-.+. ......+.-...+...
T Consensus 62 p~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~ll 141 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRDRVAKLEQQVLRLL 141 (302)
T ss_pred CceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHH
Confidence 4599999999999999999998654321 11246777765321100 0111222222333444
Q ss_pred HhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCCCcEEEEEecCCCC--ccccccccC
Q 002386 652 LDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLE--KIPQSLTSS 729 (929)
Q Consensus 652 ~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~VivIattn~~~--~L~~~L~~~ 729 (929)
+..++.+|+|||++.++. ++....+.+.+.|..+-.++.- +++.++|..-.. .-|+-+.+
T Consensus 142 r~~~vrmLIIDE~H~lLa--------Gs~~~qr~~Ln~LK~L~NeL~i---------piV~vGt~~A~~al~~D~QLa~- 203 (302)
T PF05621_consen 142 RRLGVRMLIIDEFHNLLA--------GSYRKQREFLNALKFLGNELQI---------PIVGVGTREAYRALRTDPQLAS- 203 (302)
T ss_pred HHcCCcEEEeechHHHhc--------ccHHHHHHHHHHHHHHhhccCC---------CeEEeccHHHHHHhccCHHHHh-
Confidence 456778999999999863 1223344555555554333321 356666643222 23566666
Q ss_pred CCcceEeeCCCCcH-HHHHHHHHHHHhhccc----cc-CHHHHHHHHhhcCCCChhhHHHHHHHHHHHHhhccccCCccc
Q 002386 730 GRFDFHVQLPAPAA-SERKAILEHEIQRRSL----EC-SDEILLDVASKCDGYDAYDLEILVDRTVHAAVGRYLHSDSSF 803 (929)
Q Consensus 730 ~Rf~~~i~l~~Pd~-~eR~~IL~~~l~~~~~----~~-~d~~l~~LA~~teG~s~~DL~~Lv~~A~~~a~~r~~~~~~~~ 803 (929)
||. .+.+|.... ++...++..+-....+ .+ +.+....|-..++|..+ ++..++..|+..|+..
T Consensus 204 -RF~-~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG-~l~~ll~~aA~~AI~s-------- 272 (302)
T PF05621_consen 204 -RFE-PFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIG-ELSRLLNAAAIAAIRS-------- 272 (302)
T ss_pred -ccC-CccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchH-HHHHHHHHHHHHHHhc--------
Confidence 998 567776644 3455566655443222 23 34456788899999776 7888888888888865
Q ss_pred ccccccccccccccc
Q 002386 804 EKHIKPTLVRDDFSQ 818 (929)
Q Consensus 804 ~~~~~~~lt~edf~~ 818 (929)
+...|+.+.+..
T Consensus 273 ---G~E~It~~~l~~ 284 (302)
T PF05621_consen 273 ---GEERITREILDK 284 (302)
T ss_pred ---CCceecHHHHhh
Confidence 335577666654
No 219
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.74 E-value=6.4e-08 Score=110.37 Aligned_cols=138 Identities=17% Similarity=0.212 Sum_probs=79.4
Q ss_pred CceEEEECCCCcHHHHHHHHHHHHhccCccc-eeeEEEEe----ccccc-cCchhh-----HHHHHHHHHHHHHh--cCC
Q 002386 590 PGHILIHGPPGSGKTSLAKAVAKSLEHHKDL-VAHIVFVC----CSRLS-LEKGPI-----IRQALSNFISEALD--HAP 656 (929)
Q Consensus 590 ~~~vLL~GppGtGKTtLaralA~~L~~~~~~-~~~~~~V~----~s~L~-~~~~~~-----~~~~l~~~f~~a~~--~~P 656 (929)
.++++|+||||||||++|+.+|..+...... ....+.+. ..++. +..... ....+.+++..|.. ..|
T Consensus 194 ~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~ 273 (459)
T PRK11331 194 KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKK 273 (459)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCCCCCeEecCchHHHHHHHHHhcccCC
Confidence 3679999999999999999999988532110 01112221 11222 111110 11234455566654 357
Q ss_pred cEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhc------------c-cccCccCCCcEEEEEecCCCC---
Q 002386 657 SIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG------------E-KRKSSCGIGPIAFVASAQSLE--- 720 (929)
Q Consensus 657 sVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~------------~-~~~~~~~~~~VivIattn~~~--- 720 (929)
.+|||||++..-. .++...+..+++.-. . ......-..++.+|||+|..+
T Consensus 274 ~vliIDEINRani--------------~kiFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~ 339 (459)
T PRK11331 274 YVFIIDEINRANL--------------SKVFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVPENVYIIGLMNTADRSL 339 (459)
T ss_pred cEEEEehhhccCH--------------HHhhhhhhhhccccccccccceeeeccccccccccCCCCeEEEEecCccccch
Confidence 9999999987531 122222233333110 0 001133446899999999877
Q ss_pred -ccccccccCCCcceEeeCCC-CcHH
Q 002386 721 -KIPQSLTSSGRFDFHVQLPA-PAAS 744 (929)
Q Consensus 721 -~L~~~L~~~~Rf~~~i~l~~-Pd~~ 744 (929)
.+|.+|+| ||. .+++.+ ++..
T Consensus 340 ~~lD~AlrR--RF~-fi~i~p~~~~~ 362 (459)
T PRK11331 340 AVVDYALRR--RFS-FIDIEPGFDTP 362 (459)
T ss_pred hhccHHHHh--hhh-eEEecCCCChH
Confidence 68999999 997 566664 3443
No 220
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.74 E-value=1.4e-07 Score=115.67 Aligned_cols=200 Identities=15% Similarity=0.199 Sum_probs=120.4
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccc
Q 002386 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSR 631 (929)
Q Consensus 552 ~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~ 631 (929)
.+.++.|.+..+.++.+.+..+... ..+|||+|++||||+++|+++....... ..+|+.++|..
T Consensus 323 ~~~~l~g~s~~~~~~~~~~~~~a~~-------------~~pvli~Ge~GtGK~~~A~~ih~~s~r~---~~pfv~vnc~~ 386 (638)
T PRK11388 323 TFDHMPQDSPQMRRLIHFGRQAAKS-------------SFPVLLCGEEGVGKALLAQAIHNESERA---AGPYIAVNCQL 386 (638)
T ss_pred cccceEECCHHHHHHHHHHHHHhCc-------------CCCEEEECCCCcCHHHHHHHHHHhCCcc---CCCeEEEECCC
Confidence 4567788888888888877654332 3569999999999999999998865322 26899999987
Q ss_pred cccCchhhHHHHHHHHHHH------------HHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcc
Q 002386 632 LSLEKGPIIRQALSNFISE------------ALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGE 699 (929)
Q Consensus 632 L~~~~~~~~~~~l~~~f~~------------a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~ 699 (929)
+..... . .++|.. .....+..|||||++.+-. .+...|.+.++.-.-
T Consensus 387 ~~~~~~---~---~elfg~~~~~~~~~~~g~~~~a~~GtL~ldei~~l~~---------------~~Q~~Ll~~l~~~~~ 445 (638)
T PRK11388 387 YPDEAL---A---EEFLGSDRTDSENGRLSKFELAHGGTLFLEKVEYLSP---------------ELQSALLQVLKTGVI 445 (638)
T ss_pred CChHHH---H---HHhcCCCCcCccCCCCCceeECCCCEEEEcChhhCCH---------------HHHHHHHHHHhcCcE
Confidence 753111 1 112210 1112356899999999842 344455555543221
Q ss_pred cccCc--cCCCcEEEEEecCCCCccccccccCCCcc-------eEeeCCCCcHHHH----HHHHHHHHhhc------ccc
Q 002386 700 KRKSS--CGIGPIAFVASAQSLEKIPQSLTSSGRFD-------FHVQLPAPAASER----KAILEHEIQRR------SLE 760 (929)
Q Consensus 700 ~~~~~--~~~~~VivIattn~~~~L~~~L~~~~Rf~-------~~i~l~~Pd~~eR----~~IL~~~l~~~------~~~ 760 (929)
...+. .....+.+|+||+.. +.. +...++|. ..+.+..|...+| ..+++.++.+. ...
T Consensus 446 ~~~~~~~~~~~~~riI~~t~~~--l~~-~~~~~~f~~dL~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~ 522 (638)
T PRK11388 446 TRLDSRRLIPVDVRVIATTTAD--LAM-LVEQNRFSRQLYYALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLK 522 (638)
T ss_pred EeCCCCceEEeeEEEEEeccCC--HHH-HHhcCCChHHHhhhhceeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCC
Confidence 10000 001147788887752 111 11122331 1334444444444 34455544421 245
Q ss_pred cCHHHHHHHHhhcCCCChhhHHHHHHHHHHH
Q 002386 761 CSDEILLDVASKCDGYDAYDLEILVDRTVHA 791 (929)
Q Consensus 761 ~~d~~l~~LA~~teG~s~~DL~~Lv~~A~~~ 791 (929)
++++.+..|.....-.+.++|++++++++..
T Consensus 523 ~s~~a~~~L~~y~WPGNvreL~~~l~~~~~~ 553 (638)
T PRK11388 523 IDDDALARLVSYRWPGNDFELRSVIENLALS 553 (638)
T ss_pred cCHHHHHHHHcCCCCChHHHHHHHHHHHHHh
Confidence 7899999999988777889999999988753
No 221
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.73 E-value=1.4e-08 Score=105.26 Aligned_cols=66 Identities=27% Similarity=0.478 Sum_probs=48.0
Q ss_pred CccCCCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHcCCceEEEecccc
Q 002386 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPEL 914 (929)
Q Consensus 841 ~~w~dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~glnfIsVkg~EL 914 (929)
..++|+.|++.++..++-.++...+. -....++|||||||||||+||..+|+++|.+|....||.+
T Consensus 21 ~~L~efiGQ~~l~~~l~i~i~aa~~r--------~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i 86 (233)
T PF05496_consen 21 KSLDEFIGQEHLKGNLKILIRAAKKR--------GEALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAI 86 (233)
T ss_dssp SSCCCS-S-HHHHHHHHHHHHHHHCT--------TS---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC-
T ss_pred CCHHHccCcHHHHhhhHHHHHHHHhc--------CCCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhh
Confidence 57999999999999887766532111 1223579999999999999999999999999999999753
No 222
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=98.73 E-value=1.5e-07 Score=111.27 Aligned_cols=205 Identities=17% Similarity=0.181 Sum_probs=117.1
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhcc-----CccceeeEEE
Q 002386 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEH-----HKDLVAHIVF 626 (929)
Q Consensus 552 ~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~-----~~~~~~~~~~ 626 (929)
.+.++.|.+..++++.+.+..+... ..+|||+|++||||+++|+++...+.. ......+|+.
T Consensus 217 ~f~~iiG~S~~m~~~~~~i~~~A~s-------------~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~ 283 (538)
T PRK15424 217 VLGDLLGQSPQMEQVRQTILLYARS-------------SAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVA 283 (538)
T ss_pred chhheeeCCHHHHHHHHHHHHHhCC-------------CCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEE
Confidence 4667889999999998877544332 357999999999999999999886210 1112378999
Q ss_pred EeccccccCchhhH-----HHHH--------HHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHH
Q 002386 627 VCCSRLSLEKGPII-----RQAL--------SNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDI 693 (929)
Q Consensus 627 V~~s~L~~~~~~~~-----~~~l--------~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ 693 (929)
++|..+.....+.. +..+ ..+|+.| ....|||||++.|-. .+...|++.
T Consensus 284 inCaal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A---~gGTLfLdeI~~Lp~---------------~~Q~kLl~~ 345 (538)
T PRK15424 284 VNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIA---HGGTLFLDEIGEMPL---------------PLQTRLLRV 345 (538)
T ss_pred eecccCChhhHHHHhcCCccccccCccccccCCchhcc---CCCEEEEcChHhCCH---------------HHHHHHHhh
Confidence 99998753221110 0000 0123332 245899999999842 444455555
Q ss_pred HHHhcccc--cCccCCCcEEEEEecCCCCccccccccCCCcc-------eEeeCCCCcHHHH----HHHHHHHHhh----
Q 002386 694 MDEYGEKR--KSSCGIGPIAFVASAQSLEKIPQSLTSSGRFD-------FHVQLPAPAASER----KAILEHEIQR---- 756 (929)
Q Consensus 694 ld~~~~~~--~~~~~~~~VivIattn~~~~L~~~L~~~~Rf~-------~~i~l~~Pd~~eR----~~IL~~~l~~---- 756 (929)
+++..-.. .......++.+|++|+.. +...+ ..|+|. ..+.+..|...+| ..+++.++.+
T Consensus 346 L~e~~~~r~G~~~~~~~dvRiIaat~~~--L~~~v-~~g~Fr~dL~yrL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~ 422 (538)
T PRK15424 346 LEEKEVTRVGGHQPVPVDVRVISATHCD--LEEDV-RQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKQSLAA 422 (538)
T ss_pred hhcCeEEecCCCceeccceEEEEecCCC--HHHHH-hcccchHHHHHHhcCCeecCCChhhchhHHHHHHHHHHHHHHHH
Confidence 54322100 001111246888888652 21111 112222 1234444444444 3455555553
Q ss_pred cccccCHHHH-------HHHHhhcCCCChhhHHHHHHHHHH
Q 002386 757 RSLECSDEIL-------LDVASKCDGYDAYDLEILVDRTVH 790 (929)
Q Consensus 757 ~~~~~~d~~l-------~~LA~~teG~s~~DL~~Lv~~A~~ 790 (929)
.+..++.+.+ ..|.....-.+.++|++++++++.
T Consensus 423 ~~~~~~~~a~~~~~~a~~~L~~y~WPGNvREL~nvier~~i 463 (538)
T PRK15424 423 LSAPFSAALRQGLQQCETLLLHYDWPGNVRELRNLMERLAL 463 (538)
T ss_pred cCCCCCHHHHHhhHHHHHHHHhCCCCchHHHHHHHHHHHHH
Confidence 3444566544 445555555577899999999875
No 223
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=98.72 E-value=8.4e-08 Score=113.47 Aligned_cols=206 Identities=15% Similarity=0.169 Sum_probs=120.6
Q ss_pred ccccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEecc
Q 002386 551 SNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCS 630 (929)
Q Consensus 551 ~~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s 630 (929)
..+.++.|....++++.+.+..+... ..+|||+|++||||+++|+++....... ..+|+.++|.
T Consensus 209 ~~f~~iiG~S~~m~~~~~~i~~~A~~-------------~~pVLI~GE~GTGKe~lA~~IH~~S~r~---~~pfv~inC~ 272 (526)
T TIGR02329 209 YRLDDLLGASAPMEQVRALVRLYARS-------------DATVLILGESGTGKELVAQAIHQLSGRR---DFPFVAINCG 272 (526)
T ss_pred cchhheeeCCHHHHHHHHHHHHHhCC-------------CCcEEEECCCCcCHHHHHHHHHHhcCcC---CCCEEEeccc
Confidence 34667889999999998877654332 2579999999999999999998754322 2789999998
Q ss_pred ccccCchhh-H----HH--------HHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHh
Q 002386 631 RLSLEKGPI-I----RQ--------ALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEY 697 (929)
Q Consensus 631 ~L~~~~~~~-~----~~--------~l~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~ 697 (929)
.+....... + +. .-..+|+.| ....|||||++.|-. .+...|.+.++..
T Consensus 273 ~l~e~lleseLFG~~~gaftga~~~~~~Gl~e~A---~gGTLfLdeI~~Lp~---------------~~Q~~Ll~~L~~~ 334 (526)
T TIGR02329 273 AIAESLLEAELFGYEEGAFTGARRGGRTGLIEAA---HRGTLFLDEIGEMPL---------------PLQTRLLRVLEER 334 (526)
T ss_pred cCChhHHHHHhcCCcccccccccccccccchhhc---CCceEEecChHhCCH---------------HHHHHHHHHHhcC
Confidence 775322111 0 00 001123322 245899999999842 4444555555432
Q ss_pred cccc--cCccCCCcEEEEEecCCCC-------ccccccccCCCcc-eEeeCCCCcH--HHHHHHHHHHHhh----ccccc
Q 002386 698 GEKR--KSSCGIGPIAFVASAQSLE-------KIPQSLTSSGRFD-FHVQLPAPAA--SERKAILEHEIQR----RSLEC 761 (929)
Q Consensus 698 ~~~~--~~~~~~~~VivIattn~~~-------~L~~~L~~~~Rf~-~~i~l~~Pd~--~eR~~IL~~~l~~----~~~~~ 761 (929)
.-.. ........+.+|++++..- .+.+.|.. |+. ..|++||... ++...++..++.+ .+..+
T Consensus 335 ~~~r~g~~~~~~~dvRiIaat~~~l~~~v~~g~fr~dL~~--rL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~ 412 (526)
T TIGR02329 335 EVVRVGGTEPVPVDVRVVAATHCALTTAVQQGRFRRDLFY--RLSILRIALPPLRERPGDILPLAAEYLVQAAAALRLPD 412 (526)
T ss_pred cEEecCCCceeeecceEEeccCCCHHHHhhhcchhHHHHH--hcCCcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCC
Confidence 2100 0001112467888876522 11222222 332 3455555532 2334455555543 23456
Q ss_pred CHHHHHH-------HHhhcCCCChhhHHHHHHHHHHHH
Q 002386 762 SDEILLD-------VASKCDGYDAYDLEILVDRTVHAA 792 (929)
Q Consensus 762 ~d~~l~~-------LA~~teG~s~~DL~~Lv~~A~~~a 792 (929)
+++.+.. |.....-.+-++|++++++++..+
T Consensus 413 ~~~a~~~~~~~~~~L~~y~WPGNvrEL~nvier~~i~~ 450 (526)
T TIGR02329 413 SEAAAQVLAGVADPLQRYPWPGNVRELRNLVERLALEL 450 (526)
T ss_pred CHHHHHHhHHHHHHHHhCCCCchHHHHHHHHHHHHHhc
Confidence 7776665 666666667889999999987543
No 224
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.71 E-value=3.1e-07 Score=103.05 Aligned_cols=175 Identities=17% Similarity=0.170 Sum_probs=118.2
Q ss_pred cchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCcc------------------
Q 002386 558 WMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKD------------------ 619 (929)
Q Consensus 558 g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~------------------ 619 (929)
|+....+++.+.+.. ...+..+||+||+|+||+++|+++|+.+-....
T Consensus 6 Wl~~~~~~l~~~~~~--------------~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g 71 (334)
T PRK07993 6 WLRPDYEQLVGSYQA--------------GRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAG 71 (334)
T ss_pred CChHHHHHHHHHHHc--------------CCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC
Confidence 677777777664321 233457999999999999999999999864211
Q ss_pred ceeeEEEEecccc-ccCchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhc
Q 002386 620 LVAHIVFVCCSRL-SLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG 698 (929)
Q Consensus 620 ~~~~~~~V~~s~L-~~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~ 698 (929)
....+.++....- ..-.+++++...+.+...+......|++||++|.+- ..-.+.|+..+++..
T Consensus 72 ~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~---------------~~AaNaLLKtLEEPp 136 (334)
T PRK07993 72 THPDYYTLTPEKGKSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLT---------------DAAANALLKTLEEPP 136 (334)
T ss_pred CCCCEEEEecccccccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhC---------------HHHHHHHHHHhcCCC
Confidence 0011233322211 123456667666666555555566799999999985 255677888887754
Q ss_pred ccccCccCCCcEEEEEecCCCCccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhhcccccCHHHHHHHHhhcCCCCh
Q 002386 699 EKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDA 778 (929)
Q Consensus 699 ~~~~~~~~~~~VivIattn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~d~~l~~LA~~teG~s~ 778 (929)
. +.+||.+|..++.|.|.++| |.. .+.|++|+.++..+.|... . ..+++....++..+.|-..
T Consensus 137 ~---------~t~fiL~t~~~~~lLpTIrS--RCq-~~~~~~~~~~~~~~~L~~~---~--~~~~~~a~~~~~la~G~~~ 199 (334)
T PRK07993 137 E---------NTWFFLACREPARLLATLRS--RCR-LHYLAPPPEQYALTWLSRE---V--TMSQDALLAALRLSAGAPG 199 (334)
T ss_pred C---------CeEEEEEECChhhChHHHHh--ccc-cccCCCCCHHHHHHHHHHc---c--CCCHHHHHHHHHHcCCCHH
Confidence 3 47888888899999999999 877 6799999998887777532 1 2445555666666666443
No 225
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.71 E-value=4.4e-07 Score=100.93 Aligned_cols=175 Identities=13% Similarity=0.107 Sum_probs=114.4
Q ss_pred ccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccc----------------
Q 002386 557 SWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL---------------- 620 (929)
Q Consensus 557 ~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~---------------- 620 (929)
.|+....+.+.+.+.. ...+..+||+||+|+||+++|+++|+.+......
T Consensus 5 PW~~~~~~~l~~~~~~--------------~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~ 70 (325)
T PRK06871 5 PWLQPTYQQITQAFQQ--------------GLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQA 70 (325)
T ss_pred cchHHHHHHHHHHHHc--------------CCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhc
Confidence 4677777776664321 2234569999999999999999999998653210
Q ss_pred --eeeEEEEeccccccCchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhc
Q 002386 621 --VAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG 698 (929)
Q Consensus 621 --~~~~~~V~~s~L~~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~ 698 (929)
...+.++...+=..-.++.++...+.+...+......|++||++|.+- ..-.+.|+..+++..
T Consensus 71 g~HPD~~~i~p~~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~---------------~~AaNaLLKtLEEPp 135 (325)
T PRK06871 71 GNHPDFHILEPIDNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLT---------------EAAANALLKTLEEPR 135 (325)
T ss_pred CCCCCEEEEccccCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhC---------------HHHHHHHHHHhcCCC
Confidence 011333332111122455666655555444554555799999999985 245677778887744
Q ss_pred ccccCccCCCcEEEEEecCCCCccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhhcccccCHHHHHHHHhhcCCCC
Q 002386 699 EKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYD 777 (929)
Q Consensus 699 ~~~~~~~~~~~VivIattn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~d~~l~~LA~~teG~s 777 (929)
. ++++|.+|+.++.+.|.++| |.. .+.|++|+.++..+.|..... ........++..+.|-.
T Consensus 136 ~---------~~~fiL~t~~~~~llpTI~S--RC~-~~~~~~~~~~~~~~~L~~~~~-----~~~~~~~~~~~l~~g~p 197 (325)
T PRK06871 136 P---------NTYFLLQADLSAALLPTIYS--RCQ-TWLIHPPEEQQALDWLQAQSS-----AEISEILTALRINYGRP 197 (325)
T ss_pred C---------CeEEEEEECChHhCchHHHh--hce-EEeCCCCCHHHHHHHHHHHhc-----cChHHHHHHHHHcCCCH
Confidence 3 47888888889999999999 776 789999999988877775321 12223444455555533
No 226
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.70 E-value=1.3e-07 Score=113.69 Aligned_cols=142 Identities=23% Similarity=0.255 Sum_probs=87.8
Q ss_pred CceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccccccCchhhHHHHHHHHHHHHH---------hcCCcEEE
Q 002386 590 PGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEAL---------DHAPSIVI 660 (929)
Q Consensus 590 ~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~~~~~~~~~~~l~~~f~~a~---------~~~PsVL~ 660 (929)
-++|||.|+||||||++|+++++.+... .+|+.+.+......-++.+. +...+.... .....+||
T Consensus 16 ~g~vLl~G~~GtgKs~lar~l~~~~~~~----~pfv~i~~~~t~d~L~G~id--l~~~~~~g~~~~~~G~L~~A~~GvL~ 89 (589)
T TIGR02031 16 LGGVAIRARAGTGKTALARALAEILPPI----MPFVELPLGVTEDRLIGGID--VEESLAGGQRVTQPGLLDEAPRGVLY 89 (589)
T ss_pred cceEEEEcCCCcHHHHHHHHHHHhCCcC----CCeEecCcccchhhcccchh--hhhhhhcCcccCCCCCeeeCCCCcEe
Confidence 3689999999999999999999987531 24555554221111122210 000011000 01235999
Q ss_pred EccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhc---cc-ccCccCCCcEEEEEecCCCC---ccccccccCCCcc
Q 002386 661 FDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG---EK-RKSSCGIGPIAFVASAQSLE---KIPQSLTSSGRFD 733 (929)
Q Consensus 661 LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~---~~-~~~~~~~~~VivIattn~~~---~L~~~L~~~~Rf~ 733 (929)
|||++.+-+ .+...|...|+.-. .+ ........++.+|+|+|..+ .+++.|.. ||.
T Consensus 90 lDEi~rl~~---------------~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~Lld--Rf~ 152 (589)
T TIGR02031 90 VDMANLLDD---------------GLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLD--RLA 152 (589)
T ss_pred ccchhhCCH---------------HHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHH--hcc
Confidence 999998852 56666777776432 10 11111123588999999865 68889998 999
Q ss_pred eEeeCC-CCcHHHHHHHHHHHH
Q 002386 734 FHVQLP-APAASERKAILEHEI 754 (929)
Q Consensus 734 ~~i~l~-~Pd~~eR~~IL~~~l 754 (929)
.++.+. .|+.++|.+|++..+
T Consensus 153 l~v~~~~~~~~~er~eil~~~~ 174 (589)
T TIGR02031 153 LHVSLEDVASQDLRVEIVRRER 174 (589)
T ss_pred CeeecCCCCCHHHHHHHHHHHH
Confidence 877665 456777888887754
No 227
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.69 E-value=1e-07 Score=113.13 Aligned_cols=143 Identities=18% Similarity=0.233 Sum_probs=85.0
Q ss_pred CCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEE---EeccccccCchhhH--HH-HHH-HHHHHHHhcCCcEEE
Q 002386 588 PLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVF---VCCSRLSLEKGPII--RQ-ALS-NFISEALDHAPSIVI 660 (929)
Q Consensus 588 ~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~---V~~s~L~~~~~~~~--~~-~l~-~~f~~a~~~~PsVL~ 660 (929)
....++||+|+||+|||++||++++..... .+.. .+|..+........ .. .++ ..+.. ....+++
T Consensus 234 r~~~~vLL~G~pGtGKs~lar~l~~~~~r~-----~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~G~l~~---A~~Gil~ 305 (509)
T smart00350 234 RGDINILLLGDPGTAKSQLLKYVEKTAPRA-----VYTTGKGSSAVGLTAAVTRDPETREFTLEGGALVL---ADNGVCC 305 (509)
T ss_pred cccceEEEeCCCChhHHHHHHHHHHHcCcc-----eEcCCCCCCcCCccccceEccCcceEEecCccEEe---cCCCEEE
Confidence 334589999999999999999999976421 1111 12322321110000 00 000 00111 2346999
Q ss_pred EccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhc---cc-ccCccCCCcEEEEEecCCCC-------------ccc
Q 002386 661 FDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG---EK-RKSSCGIGPIAFVASAQSLE-------------KIP 723 (929)
Q Consensus 661 LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~---~~-~~~~~~~~~VivIattn~~~-------------~L~ 723 (929)
|||+|.+-+ .....|...|+.-. .+ .....-..++.+|||+|+.+ .++
T Consensus 306 iDEi~~l~~---------------~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~~g~y~~~~~~~~n~~l~ 370 (509)
T smart00350 306 IDEFDKMDD---------------SDRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIGGRYDPKLTPEENIDLP 370 (509)
T ss_pred EechhhCCH---------------HHHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCCCcccCCCcChhhccCCC
Confidence 999999742 34455666665422 11 00011113588999999863 488
Q ss_pred cccccCCCcceEe-eCCCCcHHHHHHHHHHHHh
Q 002386 724 QSLTSSGRFDFHV-QLPAPAASERKAILEHEIQ 755 (929)
Q Consensus 724 ~~L~~~~Rf~~~i-~l~~Pd~~eR~~IL~~~l~ 755 (929)
+++++ ||+..+ -+..|+.+...+|+++.+.
T Consensus 371 ~~lLs--RFdLi~~~~d~~~~~~d~~i~~~i~~ 401 (509)
T smart00350 371 APILS--RFDLLFVVLDEVDEERDRELAKHVVD 401 (509)
T ss_pred hHHhC--ceeeEEEecCCCChHHHHHHHHHHHH
Confidence 99999 998654 5578999999898887553
No 228
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=98.69 E-value=2.3e-08 Score=112.65 Aligned_cols=84 Identities=23% Similarity=0.353 Sum_probs=64.8
Q ss_pred CCCCchhhHHHHHHHHhcCCCchhhhhhC-CCCCCceeEEecCCCCcHHHHHHHHHHHcCCceEEEecccccc-cccC-h
Q 002386 845 DVGGLTDIQNAIKEMIELPSKFPNIFAQA-PLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLN-KYIG-A 921 (929)
Q Consensus 845 dIgGL~~vk~~L~e~le~p~k~~~if~~~-~lr~~sGiLLyGpPGtGKT~LA~alA~e~glnfIsVkg~ELl~-kyIG-~ 921 (929)
.|.|++++|+.+...+....+........ .-..++++||+||||||||++|+++|+.++.+|+.++++++.. .|+| .
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~d 92 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 92 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCC
Confidence 37899999999987776322221111110 0123589999999999999999999999999999999999984 8999 6
Q ss_pred hhHHHhh
Q 002386 922 SEQAVRR 928 (929)
Q Consensus 922 SEq~VRd 928 (929)
+|..+|+
T Consensus 93 vE~i~r~ 99 (441)
T TIGR00390 93 VESMVRD 99 (441)
T ss_pred HHHHHHH
Confidence 8988875
No 229
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.69 E-value=1.2e-07 Score=106.14 Aligned_cols=130 Identities=25% Similarity=0.315 Sum_probs=89.3
Q ss_pred eEEEECCCCcHHHHHHHHHHHHhccCcc------------------ceeeEEEEeccccccCchhhHHHHHHHHHHHHHh
Q 002386 592 HILIHGPPGSGKTSLAKAVAKSLEHHKD------------------LVAHIVFVCCSRLSLEKGPIIRQALSNFISEALD 653 (929)
Q Consensus 592 ~vLL~GppGtGKTtLaralA~~L~~~~~------------------~~~~~~~V~~s~L~~~~~~~~~~~l~~~f~~a~~ 653 (929)
.+||+||||+|||++|.++|+.+..... ....+..++.++..+.. .....++++.+....
T Consensus 26 alL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~~--i~~~~vr~~~~~~~~ 103 (325)
T COG0470 26 ALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKID--IIVEQVRELAEFLSE 103 (325)
T ss_pred eeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCCc--chHHHHHHHHHHhcc
Confidence 5999999999999999999999873321 11357777777766542 122333333333322
Q ss_pred ----cCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCCCcEEEEEecCCCCccccccccC
Q 002386 654 ----HAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSS 729 (929)
Q Consensus 654 ----~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~VivIattn~~~~L~~~L~~~ 729 (929)
...-|++|||+|.+.. .-.+.++..++.... +..+|.+||.+..+-+.+++
T Consensus 104 ~~~~~~~kviiidead~mt~---------------~A~nallk~lEep~~---------~~~~il~~n~~~~il~tI~S- 158 (325)
T COG0470 104 SPLEGGYKVVIIDEADKLTE---------------DAANALLKTLEEPPK---------NTRFILITNDPSKILPTIRS- 158 (325)
T ss_pred CCCCCCceEEEeCcHHHHhH---------------HHHHHHHHHhccCCC---------CeEEEEEcCChhhccchhhh-
Confidence 3456999999999862 445667777766543 47888888999999999998
Q ss_pred CCcceEeeCCCCcHHHHHHHH
Q 002386 730 GRFDFHVQLPAPAASERKAIL 750 (929)
Q Consensus 730 ~Rf~~~i~l~~Pd~~eR~~IL 750 (929)
|.. .+.|++|+...+....
T Consensus 159 -Rc~-~i~f~~~~~~~~i~~~ 177 (325)
T COG0470 159 -RCQ-RIRFKPPSRLEAIAWL 177 (325)
T ss_pred -cce-eeecCCchHHHHHHHh
Confidence 766 7788886555544433
No 230
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.67 E-value=1.5e-07 Score=105.68 Aligned_cols=135 Identities=18% Similarity=0.197 Sum_probs=87.7
Q ss_pred CceEEEECCCCcHHHHHHHHHHHHhccCccc------------------eeeEEEEeccccccCchhhHHHHHHHHHHHH
Q 002386 590 PGHILIHGPPGSGKTSLAKAVAKSLEHHKDL------------------VAHIVFVCCSRLSLEKGPIIRQALSNFISEA 651 (929)
Q Consensus 590 ~~~vLL~GppGtGKTtLaralA~~L~~~~~~------------------~~~~~~V~~s~L~~~~~~~~~~~l~~~f~~a 651 (929)
+..+||+||+|+||+++|+++|+.+...... ...+.++.... ..-..++++..+..+-...
T Consensus 28 ~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i~~~~-~~i~id~ir~l~~~~~~~~ 106 (329)
T PRK08058 28 SHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLVAPDG-QSIKKDQIRYLKEEFSKSG 106 (329)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEecccc-ccCCHHHHHHHHHHHhhCC
Confidence 4568999999999999999999998543200 01122222211 0112334444333222112
Q ss_pred HhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCCCcEEEEEecCCCCccccccccCCC
Q 002386 652 LDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGR 731 (929)
Q Consensus 652 ~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~VivIattn~~~~L~~~L~~~~R 731 (929)
......|++|||+|.+- ....+.|+..+++... .+.+|.+|+.+..+.+.+++ |
T Consensus 107 ~~~~~kvviI~~a~~~~---------------~~a~NaLLK~LEEPp~---------~~~~Il~t~~~~~ll~TIrS--R 160 (329)
T PRK08058 107 VESNKKVYIIEHADKMT---------------ASAANSLLKFLEEPSG---------GTTAILLTENKHQILPTILS--R 160 (329)
T ss_pred cccCceEEEeehHhhhC---------------HHHHHHHHHHhcCCCC---------CceEEEEeCChHhCcHHHHh--h
Confidence 22344699999999884 2455677777776443 36777788788899999999 7
Q ss_pred cceEeeCCCCcHHHHHHHHHH
Q 002386 732 FDFHVQLPAPAASERKAILEH 752 (929)
Q Consensus 732 f~~~i~l~~Pd~~eR~~IL~~ 752 (929)
.. .++|++|+.++..++|+.
T Consensus 161 c~-~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 161 CQ-VVEFRPLPPESLIQRLQE 180 (329)
T ss_pred ce-eeeCCCCCHHHHHHHHHH
Confidence 66 889999999988777753
No 231
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.67 E-value=3.7e-07 Score=109.50 Aligned_cols=201 Identities=15% Similarity=0.176 Sum_probs=109.8
Q ss_pred ccccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEecc
Q 002386 551 SNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCS 630 (929)
Q Consensus 551 ~~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s 630 (929)
..++++.|.+..++++...+..... +..+.+.++|+|||||||||+++.+|+.++...... .-.++|.
T Consensus 81 ~~ldel~~~~~ki~~l~~~l~~~~~----------~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew--~npv~~~ 148 (637)
T TIGR00602 81 ETQHELAVHKKKIEEVETWLKAQVL----------ENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEW--SNPTLPD 148 (637)
T ss_pred CCHHHhcCcHHHHHHHHHHHHhccc----------ccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHH--hhhhhhc
Confidence 3466788888888877765543211 123334599999999999999999999887431110 1112221
Q ss_pred cccc---------C---chhhHHHHHHHHHHHHH----------hcCCcEEEEccccccccCCCCCCCCCCchhHHHHHH
Q 002386 631 RLSL---------E---KGPIIRQALSNFISEAL----------DHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTK 688 (929)
Q Consensus 631 ~L~~---------~---~~~~~~~~l~~~f~~a~----------~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~ 688 (929)
.... . .+......+..++..+. .....||||||++.++.. . ..
T Consensus 149 ~~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r--------~----~~--- 213 (637)
T TIGR00602 149 FQKNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYR--------D----TR--- 213 (637)
T ss_pred ccccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchh--------h----HH---
Confidence 1100 0 01122334555555553 134569999999987620 0 01
Q ss_pred HHHHHHH-HhcccccCccCCCcEEEEEecCCC------C-c------cccccccCCCcceEeeCCCCcHHHHHHHHHHHH
Q 002386 689 FLVDIMD-EYGEKRKSSCGIGPIAFVASAQSL------E-K------IPQSLTSSGRFDFHVQLPAPAASERKAILEHEI 754 (929)
Q Consensus 689 ~L~~~ld-~~~~~~~~~~~~~~VivIattn~~------~-~------L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l 754 (929)
.+.+++. .+.... ..++++|.+-+.. + . |.+++++..|.. +|.|++.+..+..+.|+..+
T Consensus 214 ~lq~lLr~~~~e~~-----~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv~-~I~FnPia~t~l~K~L~rIl 287 (637)
T TIGR00602 214 ALHEILRWKYVSIG-----RCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRVS-NISFNPIAPTIMKKFLNRIV 287 (637)
T ss_pred HHHHHHHHHhhcCC-----CceEEEEecCCccccccccccccchhcccCHhHhccccee-EEEeCCCCHHHHHHHHHHHH
Confidence 1222222 111111 1134444442221 0 1 235665433443 78999999999888888877
Q ss_pred hhcccc------c-CHHHHHHHHhhcCCCChhhHHHHHHHH
Q 002386 755 QRRSLE------C-SDEILLDVASKCDGYDAYDLEILVDRT 788 (929)
Q Consensus 755 ~~~~~~------~-~d~~l~~LA~~teG~s~~DL~~Lv~~A 788 (929)
...... + +++.+..|+....| |++.++...
T Consensus 288 ~~E~~~~~~~~~~p~~~~l~~I~~~s~G----DiRsAIn~L 324 (637)
T TIGR00602 288 TIEAKKNGEKIKVPKKTSVELLCQGCSG----DIRSAINSL 324 (637)
T ss_pred HhhhhccccccccCCHHHHHHHHHhCCC----hHHHHHHHH
Confidence 653221 1 35678888886666 555544443
No 232
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.67 E-value=2e-07 Score=94.33 Aligned_cols=127 Identities=18% Similarity=0.215 Sum_probs=75.4
Q ss_pred cccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccccccC
Q 002386 556 LSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLE 635 (929)
Q Consensus 556 l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~~~ 635 (929)
++|.+..+.++++.+..+.. .+.+|||+|++||||+++|++|.+.... ...+|+.++|+.+...
T Consensus 1 liG~s~~m~~~~~~~~~~a~-------------~~~pVlI~GE~GtGK~~lA~~IH~~s~r---~~~pfi~vnc~~~~~~ 64 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAAS-------------SDLPVLITGETGTGKELLARAIHNNSPR---KNGPFISVNCAALPEE 64 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTT-------------STS-EEEECSTTSSHHHHHHHHHHCSTT---TTS-EEEEETTTS-HH
T ss_pred CEeCCHHHHHHHHHHHHHhC-------------CCCCEEEEcCCCCcHHHHHHHHHHhhhc---ccCCeEEEehhhhhcc
Confidence 35677788888887765543 2367999999999999999999884332 2378999999887432
Q ss_pred chhhHHHHH--------------HHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhc--c
Q 002386 636 KGPIIRQAL--------------SNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG--E 699 (929)
Q Consensus 636 ~~~~~~~~l--------------~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~--~ 699 (929)
... ...+ ..+|+.| ...+|||||++.|.+ .+...|.+.++.-. .
T Consensus 65 ~~e--~~LFG~~~~~~~~~~~~~~G~l~~A---~~GtL~Ld~I~~L~~---------------~~Q~~Ll~~l~~~~~~~ 124 (168)
T PF00158_consen 65 LLE--SELFGHEKGAFTGARSDKKGLLEQA---NGGTLFLDEIEDLPP---------------ELQAKLLRVLEEGKFTR 124 (168)
T ss_dssp HHH--HHHHEBCSSSSTTTSSEBEHHHHHT---TTSEEEEETGGGS-H---------------HHHHHHHHHHHHSEEEC
T ss_pred hhh--hhhhccccccccccccccCCceeec---cceEEeecchhhhHH---------------HHHHHHHHHHhhchhcc
Confidence 211 0011 1234444 345999999999853 45555666665422 1
Q ss_pred cccCccCCCcEEEEEecCC
Q 002386 700 KRKSSCGIGPIAFVASAQS 718 (929)
Q Consensus 700 ~~~~~~~~~~VivIattn~ 718 (929)
.........++.+|++|+.
T Consensus 125 ~g~~~~~~~~~RiI~st~~ 143 (168)
T PF00158_consen 125 LGSDKPVPVDVRIIASTSK 143 (168)
T ss_dssp CTSSSEEE--EEEEEEESS
T ss_pred ccccccccccceEEeecCc
Confidence 1111111236889999874
No 233
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.67 E-value=6e-07 Score=94.34 Aligned_cols=158 Identities=19% Similarity=0.306 Sum_probs=116.7
Q ss_pred ceEEEECCCCcHHHHHHHHHHHHhccCc---------------cce--------eeEEEEeccccccCchhhHHHHHHHH
Q 002386 591 GHILIHGPPGSGKTSLAKAVAKSLEHHK---------------DLV--------AHIVFVCCSRLSLEKGPIIRQALSNF 647 (929)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~L~~~~---------------~~~--------~~~~~V~~s~L~~~~~~~~~~~l~~~ 647 (929)
.|+|+|||+|+||-|.+.++.+++--.+ ... .+.+.++.++.-... +-.++++
T Consensus 35 PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlEitPSDaG~~D----RvViQel 110 (351)
T KOG2035|consen 35 PHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLEITPSDAGNYD----RVVIQEL 110 (351)
T ss_pred CeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEEeChhhcCccc----HHHHHHH
Confidence 4799999999999999999998874211 000 122233333322111 3445555
Q ss_pred HHHHHhcCC---------cEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCCCcEEEEEecCC
Q 002386 648 ISEALDHAP---------SIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQS 718 (929)
Q Consensus 648 f~~a~~~~P---------sVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~VivIattn~ 718 (929)
+.+..+.+| .+++|-|+|.|. ..-...|.+.|+.+.+ ++.+|..+|+
T Consensus 111 lKevAQt~qie~~~qr~fKvvvi~ead~LT---------------~dAQ~aLRRTMEkYs~---------~~RlIl~cns 166 (351)
T KOG2035|consen 111 LKEVAQTQQIETQGQRPFKVVVINEADELT---------------RDAQHALRRTMEKYSS---------NCRLILVCNS 166 (351)
T ss_pred HHHHHhhcchhhccccceEEEEEechHhhh---------------HHHHHHHHHHHHHHhc---------CceEEEEecC
Confidence 555544433 499999999986 2445678889998875 3788889999
Q ss_pred CCccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhhcccccCHHHHHHHHhhcCCCChh
Q 002386 719 LEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAY 779 (929)
Q Consensus 719 ~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~d~~l~~LA~~teG~s~~ 779 (929)
...+=+++++ |.- .+.+|.|+.++...++...+++.++.++.+.+..+|+..+|-..+
T Consensus 167 ~SriIepIrS--RCl-~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l~rIa~kS~~nLRr 224 (351)
T KOG2035|consen 167 TSRIIEPIRS--RCL-FIRVPAPSDEEITSVLSKVLKKEGLQLPKELLKRIAEKSNRNLRR 224 (351)
T ss_pred cccchhHHhh--hee-EEeCCCCCHHHHHHHHHHHHHHhcccCcHHHHHHHHHHhcccHHH
Confidence 9999899998 654 689999999999999999999999999999999999998874433
No 234
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.66 E-value=1.6e-07 Score=94.64 Aligned_cols=125 Identities=22% Similarity=0.303 Sum_probs=81.1
Q ss_pred CceEEEECCCCcHHHHHHHHHHHHhccCccc-----------------eeeEEEEeccccc-cCchhhHHHHHHHHHHHH
Q 002386 590 PGHILIHGPPGSGKTSLAKAVAKSLEHHKDL-----------------VAHIVFVCCSRLS-LEKGPIIRQALSNFISEA 651 (929)
Q Consensus 590 ~~~vLL~GppGtGKTtLaralA~~L~~~~~~-----------------~~~~~~V~~s~L~-~~~~~~~~~~l~~~f~~a 651 (929)
+..+||+||+|+||+++|+++|+.+-..... ...+.+++..... .-..++++.....+....
T Consensus 19 ~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~i~i~~ir~i~~~~~~~~ 98 (162)
T PF13177_consen 19 PHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKKSIKIDQIREIIEFLSLSP 98 (162)
T ss_dssp -SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSSSBSHHHHHHHHHHCTSS-
T ss_pred ceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccchhhHHHHHHHHHHHHHHH
Confidence 4569999999999999999999998654321 2345555444331 223445554333332223
Q ss_pred HhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCCCcEEEEEecCCCCccccccccCCC
Q 002386 652 LDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGR 731 (929)
Q Consensus 652 ~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~VivIattn~~~~L~~~L~~~~R 731 (929)
......|++|||+|.+. ....+.|+..|++... ++.+|.+|+.++.+.+.+++ |
T Consensus 99 ~~~~~KviiI~~ad~l~---------------~~a~NaLLK~LEepp~---------~~~fiL~t~~~~~il~TI~S--R 152 (162)
T PF13177_consen 99 SEGKYKVIIIDEADKLT---------------EEAQNALLKTLEEPPE---------NTYFILITNNPSKILPTIRS--R 152 (162)
T ss_dssp TTSSSEEEEEETGGGS----------------HHHHHHHHHHHHSTTT---------TEEEEEEES-GGGS-HHHHT--T
T ss_pred hcCCceEEEeehHhhhh---------------HHHHHHHHHHhcCCCC---------CEEEEEEECChHHChHHHHh--h
Confidence 33456799999999985 3667888888888653 48889999999999999999 7
Q ss_pred cceEeeCCCC
Q 002386 732 FDFHVQLPAP 741 (929)
Q Consensus 732 f~~~i~l~~P 741 (929)
.. .++|++.
T Consensus 153 c~-~i~~~~l 161 (162)
T PF13177_consen 153 CQ-VIRFRPL 161 (162)
T ss_dssp SE-EEEE---
T ss_pred ce-EEecCCC
Confidence 66 5666653
No 235
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.65 E-value=6.2e-07 Score=99.58 Aligned_cols=175 Identities=19% Similarity=0.216 Sum_probs=109.5
Q ss_pred cchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccce---------------e
Q 002386 558 WMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLV---------------A 622 (929)
Q Consensus 558 g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~---------------~ 622 (929)
|+....+.+.+.+.. ...+..+||+||+|+||+++|+++|+.+....... .
T Consensus 8 W~~~~~~~l~~~~~~--------------~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HP 73 (319)
T PRK08769 8 WQQRAYDQTVAALDA--------------GRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHP 73 (319)
T ss_pred cHHHHHHHHHHHHHc--------------CCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCC
Confidence 566667666654321 22345699999999999999999999886432100 1
Q ss_pred eEEEE--eccccc-----cCchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHH
Q 002386 623 HIVFV--CCSRLS-----LEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMD 695 (929)
Q Consensus 623 ~~~~V--~~s~L~-----~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld 695 (929)
.+.++ ..+.-. .-.++.++.....+..........|++||++|.+. ..-.+.|+..++
T Consensus 74 D~~~i~~~p~~~~~k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~---------------~~AaNaLLKtLE 138 (319)
T PRK08769 74 DLQLVSFIPNRTGDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAIN---------------RAACNALLKTLE 138 (319)
T ss_pred CEEEEecCCCcccccccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhC---------------HHHHHHHHHHhh
Confidence 12223 111100 01133333333322222222344699999999985 245677888888
Q ss_pred HhcccccCccCCCcEEEEEecCCCCccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhhcccccCHHHHHHHHhhcCC
Q 002386 696 EYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDG 775 (929)
Q Consensus 696 ~~~~~~~~~~~~~~VivIattn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~d~~l~~LA~~teG 775 (929)
+... ++.||.+++.++.+.|.++| |.. .+.|++|+.++..+.|.. .+ .++.....++..+.|
T Consensus 139 EPp~---------~~~fiL~~~~~~~lLpTIrS--RCq-~i~~~~~~~~~~~~~L~~----~~--~~~~~a~~~~~l~~G 200 (319)
T PRK08769 139 EPSP---------GRYLWLISAQPARLPATIRS--RCQ-RLEFKLPPAHEALAWLLA----QG--VSERAAQEALDAARG 200 (319)
T ss_pred CCCC---------CCeEEEEECChhhCchHHHh--hhe-EeeCCCcCHHHHHHHHHH----cC--CChHHHHHHHHHcCC
Confidence 7543 36777788888999999999 877 789999999887777653 22 344445556666666
Q ss_pred CChh
Q 002386 776 YDAY 779 (929)
Q Consensus 776 ~s~~ 779 (929)
-...
T Consensus 201 ~p~~ 204 (319)
T PRK08769 201 HPGL 204 (319)
T ss_pred CHHH
Confidence 5443
No 236
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.64 E-value=7.2e-09 Score=98.18 Aligned_cols=116 Identities=22% Similarity=0.239 Sum_probs=60.4
Q ss_pred eEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEecc-c-----cccCchhhHHHHHHHHHHHH-HhcCCcEEEEccc
Q 002386 592 HILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCS-R-----LSLEKGPIIRQALSNFISEA-LDHAPSIVIFDNL 664 (929)
Q Consensus 592 ~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s-~-----L~~~~~~~~~~~l~~~f~~a-~~~~PsVL~LDEi 664 (929)
|+||.|+||+|||++|+++|+.++ ..|..|.|. + +.|......+. ..|.-. -.-...|+++||+
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~------~~f~RIq~tpdllPsDi~G~~v~~~~~---~~f~~~~GPif~~ill~DEi 71 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLG------LSFKRIQFTPDLLPSDILGFPVYDQET---GEFEFRPGPIFTNILLADEI 71 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--------EEEEE--TT--HHHHHEEEEEETTT---TEEEEEE-TT-SSEEEEETG
T ss_pred CEeeECCCccHHHHHHHHHHHHcC------CceeEEEecCCCCcccceeeeeeccCC---CeeEeecChhhhceeeeccc
Confidence 699999999999999999999998 556666553 2 22221111000 000000 0001259999999
Q ss_pred cccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccc--CccCCCcEEEEEecCCCC-----ccccccccCCCcc
Q 002386 665 DSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRK--SSCGIGPIAFVASAQSLE-----KIPQSLTSSGRFD 733 (929)
Q Consensus 665 D~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~--~~~~~~~VivIattn~~~-----~L~~~L~~~~Rf~ 733 (929)
+..-+ +....|++.|.+..-.-. ...-..++.||||.|+.+ .|+.+++. ||-
T Consensus 72 Nrapp---------------ktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~D--RF~ 130 (131)
T PF07726_consen 72 NRAPP---------------KTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLD--RFM 130 (131)
T ss_dssp GGS-H---------------HHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHT--TSS
T ss_pred ccCCH---------------HHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhc--ccc
Confidence 88753 667778888876542210 011123588999999876 57777777 763
No 237
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.63 E-value=3e-07 Score=102.87 Aligned_cols=138 Identities=20% Similarity=0.246 Sum_probs=93.4
Q ss_pred CCCceEEEECCCCcHHHHHHHHHHHHhccCccc-------------------eeeEEEEecccc----------------
Q 002386 588 PLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL-------------------VAHIVFVCCSRL---------------- 632 (929)
Q Consensus 588 ~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~-------------------~~~~~~V~~s~L---------------- 632 (929)
..+.++||+||+|+||+++|+++|+.+...... ...+.++.....
T Consensus 19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~ 98 (342)
T PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADA 98 (342)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchh
Confidence 345679999999999999999999998653210 011222322110
Q ss_pred -----------ccCchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccc
Q 002386 633 -----------SLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKR 701 (929)
Q Consensus 633 -----------~~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~ 701 (929)
..-.+++++...+.+-..+......|+|||++|.+.. .-.+.|+..+++...
T Consensus 99 ~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~---------------~AaNaLLKtLEEPp~-- 161 (342)
T PRK06964 99 DEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALNV---------------AAANALLKTLEEPPP-- 161 (342)
T ss_pred hcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcCH---------------HHHHHHHHHhcCCCc--
Confidence 0112344444333332222333456999999999852 556777777776443
Q ss_pred cCccCCCcEEEEEecCCCCccccccccCCCcceEeeCCCCcHHHHHHHHHH
Q 002386 702 KSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEH 752 (929)
Q Consensus 702 ~~~~~~~~VivIattn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~ 752 (929)
+++||.+|++++.|.|.++| |.. .+.|++|+.++..+.|..
T Consensus 162 -------~t~fiL~t~~~~~LLpTI~S--Rcq-~i~~~~~~~~~~~~~L~~ 202 (342)
T PRK06964 162 -------GTVFLLVSARIDRLLPTILS--RCR-QFPMTVPAPEAAAAWLAA 202 (342)
T ss_pred -------CcEEEEEECChhhCcHHHHh--cCE-EEEecCCCHHHHHHHHHH
Confidence 47888888999999999999 875 889999999998888865
No 238
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.62 E-value=6e-07 Score=104.92 Aligned_cols=233 Identities=18% Similarity=0.215 Sum_probs=142.0
Q ss_pred cccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccC----ccceeeEEEEeccc
Q 002386 556 LSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHH----KDLVAHIVFVCCSR 631 (929)
Q Consensus 556 l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~----~~~~~~~~~V~~s~ 631 (929)
|-..+..+++|...+...++.. ..++.+.+.|-||||||.+++.+.+.|... ......+++||.-.
T Consensus 398 LpcRe~E~~~I~~f~~~~i~~~----------~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~ 467 (767)
T KOG1514|consen 398 LPCRENEFSEIEDFLRSFISDQ----------GLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLR 467 (767)
T ss_pred ccchhHHHHHHHHHHHhhcCCC----------CCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEccee
Confidence 3346666777777666555431 112469999999999999999999988622 22235566677655
Q ss_pred cccCc--------------hh--hHHHHHHHHHHHH-HhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHH
Q 002386 632 LSLEK--------------GP--IIRQALSNFISEA-LDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIM 694 (929)
Q Consensus 632 L~~~~--------------~~--~~~~~l~~~f~~a-~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~l 694 (929)
|.+.. .. ..-..+...|... ....++||+|||+|.|+. +-...|.+++
T Consensus 468 l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvt---------------r~QdVlYn~f 532 (767)
T KOG1514|consen 468 LASPREIYEKIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVT---------------RSQDVLYNIF 532 (767)
T ss_pred ecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhc---------------ccHHHHHHHh
Confidence 54311 00 0111222222211 223568999999999983 2234566666
Q ss_pred HHhcccccCccCCCcEEEEEecCCCCcccccccc---CCCcc-eEeeCCCCcHHHHHHHHHHHHhhcccccCHHHHHHHH
Q 002386 695 DEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTS---SGRFD-FHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVA 770 (929)
Q Consensus 695 d~~~~~~~~~~~~~~VivIattn~~~~L~~~L~~---~~Rf~-~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~d~~l~~LA 770 (929)
+....... .++||+.+|..+ +|..++. ..|++ ..+.|.+++..|..+|+...+... ..+..+.++.+|
T Consensus 533 dWpt~~~s------KLvvi~IaNTmd-lPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~-~~f~~~aielva 604 (767)
T KOG1514|consen 533 DWPTLKNS------KLVVIAIANTMD-LPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGL-DAFENKAIELVA 604 (767)
T ss_pred cCCcCCCC------ceEEEEeccccc-CHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcch-hhcchhHHHHHH
Confidence 76554332 588888888755 3333322 12554 578999999999999999888764 234555566555
Q ss_pred hhcCCCCh--hhHHHHHHHHHHHHhhccccCCccccccccccccccccccccccccc
Q 002386 771 SKCDGYDA--YDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLP 825 (929)
Q Consensus 771 ~~teG~s~--~DL~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~lt~edf~~al~~~~P 825 (929)
......+| +....+|+||..-|-.+... ........++..++.+|+.++..
T Consensus 605 rkVAavSGDaRraldic~RA~Eia~~~~~~----~k~~~~q~v~~~~v~~Ai~em~~ 657 (767)
T KOG1514|consen 605 RKVAAVSGDARRALDICRRAAEIAEERNVK----GKLAVSQLVGILHVMEAINEMLA 657 (767)
T ss_pred HHHHhccccHHHHHHHHHHHHHHhhhhccc----ccccccceeehHHHHHHHHHHhh
Confidence 55443333 33455688888777666421 01122355778888888887654
No 239
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=98.58 E-value=5.2e-08 Score=109.87 Aligned_cols=82 Identities=27% Similarity=0.407 Sum_probs=63.6
Q ss_pred CCCCchhhHHHHHHHHhcCCCchhhhhhCCCC---CCceeEEecCCCCcHHHHHHHHHHHcCCceEEEecccccc-cccC
Q 002386 845 DVGGLTDIQNAIKEMIELPSKFPNIFAQAPLR---LRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLN-KYIG 920 (929)
Q Consensus 845 dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr---~~sGiLLyGpPGtGKT~LA~alA~e~glnfIsVkg~ELl~-kyIG 920 (929)
.|.|++++|+.+...+....+...+. .+.+ .+.++||+||||||||++|+++|+.++.+|+.+++.++.. .|+|
T Consensus 16 ~IiGQe~AkkalavAl~~~~~r~~l~--~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG 93 (443)
T PRK05201 16 YIIGQDDAKRAVAIALRNRWRRMQLP--EELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVG 93 (443)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcCC--cccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCccc
Confidence 37899999999988774321111111 1222 2579999999999999999999999999999999999996 7999
Q ss_pred -hhhHHHhh
Q 002386 921 -ASEQAVRR 928 (929)
Q Consensus 921 -~SEq~VRd 928 (929)
..|..+|+
T Consensus 94 ~d~e~~ir~ 102 (443)
T PRK05201 94 RDVESIIRD 102 (443)
T ss_pred CCHHHHHHH
Confidence 55777764
No 240
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=98.58 E-value=6.5e-07 Score=94.36 Aligned_cols=130 Identities=16% Similarity=0.186 Sum_probs=82.7
Q ss_pred CCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCCCcEEEEEecCC-------------CCc
Q 002386 655 APSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQS-------------LEK 721 (929)
Q Consensus 655 ~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~VivIattn~-------------~~~ 721 (929)
-|.||||||+++|- -..+.+|...++... .+++++ ++|+ ++-
T Consensus 296 vPGVLFIDEVhMLD---------------iEcFTyL~kalES~i---------aPivif-AsNrG~~~irGt~d~~sPhG 350 (456)
T KOG1942|consen 296 VPGVLFIDEVHMLD---------------IECFTYLHKALESPI---------APIVIF-ASNRGMCTIRGTEDILSPHG 350 (456)
T ss_pred cCcceEeeehhhhh---------------hHHHHHHHHHhcCCC---------CceEEE-ecCCcceeecCCcCCCCCCC
Confidence 48899999998873 245566666665422 234444 4443 445
Q ss_pred cccccccCCCcceEeeCCCCcHHHHHHHHHHHHhhcccccCHHHHHHHHhhcCCCChhhHHHHHHHHHHHHhhccccCCc
Q 002386 722 IPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAAVGRYLHSDS 801 (929)
Q Consensus 722 L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~d~~l~~LA~~teG~s~~DL~~Lv~~A~~~a~~r~~~~~~ 801 (929)
+|+.|+. |+- .|...+++.++.++|++...+..++.++++.+..++.....-+-+-...|+.-|...+..
T Consensus 351 ip~dllD--Rl~-Iirt~~y~~~e~r~Ii~~Ra~~E~l~~~e~a~~~l~~~gt~tsLRy~vqLl~p~~~~ak~------- 420 (456)
T KOG1942|consen 351 IPPDLLD--RLL-IIRTLPYDEEEIRQIIKIRAQVEGLQVEEEALDLLAEIGTSTSLRYAVQLLTPASILAKT------- 420 (456)
T ss_pred CCHHHhh--hee-EEeeccCCHHHHHHHHHHHHhhhcceecHHHHHHHHhhccchhHHHHHHhcCHHHHHHHH-------
Confidence 6777777 655 677788899999999999999889999999999988865443433333333322222211
Q ss_pred cccccccccccccccccccccc
Q 002386 802 SFEKHIKPTLVRDDFSQAMHEF 823 (929)
Q Consensus 802 ~~~~~~~~~lt~edf~~al~~~ 823 (929)
.++..+..+|++++-+-|
T Consensus 421 ----~g~~~i~v~dvee~~~Lf 438 (456)
T KOG1942|consen 421 ----NGRKEISVEDVEEVTELF 438 (456)
T ss_pred ----cCCceeecccHHHHHHHH
Confidence 133456667766554433
No 241
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.56 E-value=2.3e-07 Score=99.57 Aligned_cols=181 Identities=18% Similarity=0.190 Sum_probs=117.6
Q ss_pred cccccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEec
Q 002386 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (929)
Q Consensus 550 ~~~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~ 629 (929)
...+.++.+.+..+..+.+.. . .+.-.|.|+|||||+|||+...+.|..+.........+...+.
T Consensus 37 P~~l~dv~~~~ei~st~~~~~-------------~--~~~lPh~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelna 101 (360)
T KOG0990|consen 37 PPFLGIVIKQEPIWSTENRYS-------------G--MPGLPHLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNA 101 (360)
T ss_pred CchhhhHhcCCchhhHHHHhc-------------c--CCCCCcccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhc
Confidence 344556666666666665521 1 1111289999999999999999999998753221122333344
Q ss_pred cccccCchhhHHHHHHHHHHHHHh-------cCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccc
Q 002386 630 SRLSLEKGPIIRQALSNFISEALD-------HAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRK 702 (929)
Q Consensus 630 s~L~~~~~~~~~~~l~~~f~~a~~-------~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~ 702 (929)
++-.+ .+..++.+. .|..++. ..+.+++|||+|.+.. .-.++|.+.+..+..
T Consensus 102 Sd~rg--id~vr~qi~-~fast~~~~~fst~~~fKlvILDEADaMT~---------------~AQnALRRviek~t~--- 160 (360)
T KOG0990|consen 102 SDDRG--IDPVRQQIH-LFASTQQPTTYSTHAAFKLVILDEADAMTR---------------DAQNALRRVIEKYTA--- 160 (360)
T ss_pred cCccC--CcchHHHHH-HHHhhccceeccccCceeEEEecchhHhhH---------------HHHHHHHHHHHHhcc---
Confidence 43332 233333332 3444432 2567999999999852 334556566655543
Q ss_pred CccCCCcEEEEEecCCCCccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhhcccccCHHHHHHHHhhcCC
Q 002386 703 SSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDG 775 (929)
Q Consensus 703 ~~~~~~~VivIattn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~d~~l~~LA~~teG 775 (929)
++.|..-+|++..+.+++++ ||. .+.|.+.+..+....+.++++......+++....++...-|
T Consensus 161 ------n~rF~ii~n~~~ki~pa~qs--Rct-rfrf~pl~~~~~~~r~shi~e~e~~~~~~~~~~a~~r~s~g 224 (360)
T KOG0990|consen 161 ------NTRFATISNPPQKIHPAQQS--RCT-RFRFAPLTMAQQTERQSHIRESEQKETNPEGYSALGRLSVG 224 (360)
T ss_pred ------ceEEEEeccChhhcCchhhc--ccc-cCCCCCCChhhhhhHHHHHHhcchhhcCHHHHHHHHHHhHH
Confidence 36677778999999999999 877 67888889888888888888776666777766666555444
No 242
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.55 E-value=1.3e-06 Score=97.74 Aligned_cols=82 Identities=20% Similarity=0.257 Sum_probs=60.8
Q ss_pred cEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhc----ccccCccCCCcEEEEEecCCCC-ccccccccCCC
Q 002386 657 SIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG----EKRKSSCGIGPIAFVASAQSLE-KIPQSLTSSGR 731 (929)
Q Consensus 657 sVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~----~~~~~~~~~~~VivIattn~~~-~L~~~L~~~~R 731 (929)
.||++||+..|- .++...|++.+..-. ...-......++++|+|+|+.+ .|-+-|+. |
T Consensus 146 GIlYvDEvnlL~---------------d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlD--R 208 (423)
T COG1239 146 GILYVDEVNLLD---------------DHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLD--R 208 (423)
T ss_pred CEEEEecccccc---------------HHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHh--h
Confidence 599999998874 378888888877631 1111123334799999999854 68888888 9
Q ss_pred cceEeeCCCC-cHHHHHHHHHHHHh
Q 002386 732 FDFHVQLPAP-AASERKAILEHEIQ 755 (929)
Q Consensus 732 f~~~i~l~~P-d~~eR~~IL~~~l~ 755 (929)
|...+.+..| +.++|.+|.++.+.
T Consensus 209 fg~~v~~~~~~~~~~rv~Ii~r~~~ 233 (423)
T COG1239 209 FGLEVDTHYPLDLEERVEIIRRRLA 233 (423)
T ss_pred hcceeeccCCCCHHHHHHHHHHHHH
Confidence 9999988766 66889999887655
No 243
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.55 E-value=3.1e-08 Score=105.72 Aligned_cols=87 Identities=22% Similarity=0.368 Sum_probs=65.0
Q ss_pred CccCCCCCchhhHHHHHHHHhcCCCchhhhhhCC-CCCCceeEEecCCCCcHHHHHHHHHHHcCC---------ceEEEe
Q 002386 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAP-LRLRSNVLLYGPPGCGKTHIVGAAAAACSL---------RFISVK 910 (929)
Q Consensus 841 ~~w~dIgGL~~vk~~L~e~le~p~k~~~if~~~~-lr~~sGiLLyGpPGtGKT~LA~alA~e~gl---------nfIsVk 910 (929)
.-|+.+.-=.++|+.|.....-.+++.+.-.+.. +...+=+||.||||||||+|++|+|+.+.. ..|.|+
T Consensus 139 glWEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEin 218 (423)
T KOG0744|consen 139 GLWESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEIN 218 (423)
T ss_pred hhHHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEe
Confidence 3588776667788888776554444433322222 233456899999999999999999998743 389999
Q ss_pred cccccccccChhhHHHh
Q 002386 911 GPELLNKYIGASEQAVR 927 (929)
Q Consensus 911 g~ELl~kyIG~SEq~VR 927 (929)
...|++||.|||-+.|.
T Consensus 219 shsLFSKWFsESgKlV~ 235 (423)
T KOG0744|consen 219 SHSLFSKWFSESGKLVA 235 (423)
T ss_pred hhHHHHHHHhhhhhHHH
Confidence 99999999999998875
No 244
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=1.9e-06 Score=92.95 Aligned_cols=128 Identities=22% Similarity=0.344 Sum_probs=79.1
Q ss_pred CcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhc-ccccCccCCCcEEEEEec----CCCCccccccccCC
Q 002386 656 PSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG-EKRKSSCGIGPIAFVASA----QSLEKIPQSLTSSG 730 (929)
Q Consensus 656 PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~-~~~~~~~~~~~VivIatt----n~~~~L~~~L~~~~ 730 (929)
-.|+||||||.++.... ..+ ..-+...+..-|+.++++.. .+.-+......++|||+. ..|.+|=|.|+.
T Consensus 251 ~GIvFIDEIDKIa~~~~-~g~--~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQG-- 325 (444)
T COG1220 251 NGIVFIDEIDKIAKRGG-SGG--PDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQG-- 325 (444)
T ss_pred cCeEEEehhhHHHhcCC-CCC--CCcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhcC--
Confidence 35999999999985332 111 12233455566666666543 122222223368888884 346677777877
Q ss_pred CcceEeeCCCCcHHHHHHHHHH-----------HHhh--cccccCHHHHHHHHhhc-------CCCChhhHHHHHHHH
Q 002386 731 RFDFHVQLPAPAASERKAILEH-----------EIQR--RSLECSDEILLDVASKC-------DGYDAYDLEILVDRT 788 (929)
Q Consensus 731 Rf~~~i~l~~Pd~~eR~~IL~~-----------~l~~--~~~~~~d~~l~~LA~~t-------eG~s~~DL~~Lv~~A 788 (929)
||...+++...+.+...+||.. +++. ..+.++++.+..+|... +...++.|..++++.
T Consensus 326 RfPIRVEL~~Lt~~Df~rILtep~~sLikQY~aLlkTE~v~l~FtddaI~~iAeiA~~vN~~~ENIGARRLhTvlErl 403 (444)
T COG1220 326 RFPIRVELDALTKEDFERILTEPKASLIKQYKALLKTEGVELEFTDDAIKRIAEIAYQVNEKTENIGARRLHTVLERL 403 (444)
T ss_pred CCceEEEcccCCHHHHHHHHcCcchHHHHHHHHHHhhcCeeEEecHHHHHHHHHHHHHhcccccchhHHHHHHHHHHH
Confidence 9999999999999998888752 1222 23457788777777643 444455554444443
No 245
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.50 E-value=1.1e-06 Score=98.39 Aligned_cols=138 Identities=20% Similarity=0.264 Sum_probs=91.0
Q ss_pred CCCceEEEECCCCcHHHHHHHHHHHHhccCcc-------------------ceeeEEEEecccc---cc-----CchhhH
Q 002386 588 PLPGHILIHGPPGSGKTSLAKAVAKSLEHHKD-------------------LVAHIVFVCCSRL---SL-----EKGPII 640 (929)
Q Consensus 588 ~~~~~vLL~GppGtGKTtLaralA~~L~~~~~-------------------~~~~~~~V~~s~L---~~-----~~~~~~ 640 (929)
..+..+||+||+|+|||++|+.+|+.+..... ....+.++....- .+ -.++.+
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~i 98 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAV 98 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHH
Confidence 33467999999999999999999999863211 0123445544210 11 134555
Q ss_pred HHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCCCcEEEEEecCCCC
Q 002386 641 RQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLE 720 (929)
Q Consensus 641 ~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~VivIattn~~~ 720 (929)
+.....+..........|+++|+++.+-. ...+.|+..+++... .+.+|.+|..++
T Consensus 99 R~l~~~~~~~p~~~~~kV~iiEp~~~Ld~---------------~a~naLLk~LEep~~---------~~~~Ilvth~~~ 154 (325)
T PRK08699 99 REIIDNVYLTSVRGGLRVILIHPAESMNL---------------QAANSLLKVLEEPPP---------QVVFLLVSHAAD 154 (325)
T ss_pred HHHHHHHhhCcccCCceEEEEechhhCCH---------------HHHHHHHHHHHhCcC---------CCEEEEEeCChH
Confidence 55443333333334456999999998842 455667777776532 255666788888
Q ss_pred ccccccccCCCcceEeeCCCCcHHHHHHHHHH
Q 002386 721 KIPQSLTSSGRFDFHVQLPAPAASERKAILEH 752 (929)
Q Consensus 721 ~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~ 752 (929)
.+.+.+++ |.. .+.|++|+.++..+.|..
T Consensus 155 ~ll~ti~S--Rc~-~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 155 KVLPTIKS--RCR-KMVLPAPSHEEALAYLRE 183 (325)
T ss_pred hChHHHHH--Hhh-hhcCCCCCHHHHHHHHHh
Confidence 89999988 665 788999999988777754
No 246
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=3.1e-06 Score=103.51 Aligned_cols=139 Identities=17% Similarity=0.205 Sum_probs=90.2
Q ss_pred cccccchhHHHHHHHHHHHhcCCCchhhhhhcCC-CCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccc-
Q 002386 554 SSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHL-PLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSR- 631 (929)
Q Consensus 554 ~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~-~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~- 631 (929)
..+.|++.++..|-+.+..... .++- .+...+||.||.|+|||-||+++|..+-... -.++.+|+++
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~--------gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse---~~~IriDmse~ 630 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRA--------GLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSE---ENFIRLDMSEF 630 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhc--------ccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCc---cceEEechhhh
Confidence 3567888888888776642211 1111 2556799999999999999999999984332 5688888885
Q ss_pred -----cccCchhhHHHHHHHHHHHH-HhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccc--cC
Q 002386 632 -----LSLEKGPIIRQALSNFISEA-LDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKR--KS 703 (929)
Q Consensus 632 -----L~~~~~~~~~~~l~~~f~~a-~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~--~~ 703 (929)
+.+...+-....-...+.++ +....+||+|||+|...+ .+...|+.++|...-++ ..
T Consensus 631 ~evskligsp~gyvG~e~gg~LteavrrrP~sVVLfdeIEkAh~---------------~v~n~llq~lD~GrltDs~Gr 695 (898)
T KOG1051|consen 631 QEVSKLIGSPPGYVGKEEGGQLTEAVKRRPYSVVLFEEIEKAHP---------------DVLNILLQLLDRGRLTDSHGR 695 (898)
T ss_pred hhhhhccCCCcccccchhHHHHHHHHhcCCceEEEEechhhcCH---------------HHHHHHHHHHhcCccccCCCc
Confidence 33332222222222234444 434458999999998642 66777778888654322 22
Q ss_pred ccCCCcEEEEEecCC
Q 002386 704 SCGIGPIAFVASAQS 718 (929)
Q Consensus 704 ~~~~~~VivIattn~ 718 (929)
....++++||+|+|.
T Consensus 696 ~Vd~kN~I~IMTsn~ 710 (898)
T KOG1051|consen 696 EVDFKNAIFIMTSNV 710 (898)
T ss_pred EeeccceEEEEeccc
Confidence 344568999999875
No 247
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.49 E-value=1.4e-06 Score=97.85 Aligned_cols=202 Identities=19% Similarity=0.234 Sum_probs=122.7
Q ss_pred ccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEecccccc
Q 002386 555 SLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSL 634 (929)
Q Consensus 555 ~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~~ 634 (929)
.+.|.+..++.+.+.+..-+. ...++.+.+.|.||+|||.+..-+-..+..... ....+|++|..+..
T Consensus 151 ~l~gRe~e~~~v~~F~~~hle-----------~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~-~~~~v~inc~sl~~ 218 (529)
T KOG2227|consen 151 TLKGRELEMDIVREFFSLHLE-----------LNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSK-SPVTVYINCTSLTE 218 (529)
T ss_pred CccchHHHHHHHHHHHHhhhh-----------cccCcceEeeCCCCcchHHHHHHHHHhhhhhcc-cceeEEEeeccccc
Confidence 344566666666665543222 455688999999999999999877766543322 13568999986532
Q ss_pred C--chhhH-------------HHHHHHHHHHHH-hc-CCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHH--H
Q 002386 635 E--KGPII-------------RQALSNFISEAL-DH-APSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIM--D 695 (929)
Q Consensus 635 ~--~~~~~-------------~~~l~~~f~~a~-~~-~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~l--d 695 (929)
. -+..+ ...+...|+.-. .. .+-++++||+|.|+.... . .|..++ .
T Consensus 219 ~~aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~------------~---vLy~lFewp 283 (529)
T KOG2227|consen 219 ASAIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQ------------T---VLYTLFEWP 283 (529)
T ss_pred hHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhccc------------c---eeeeehhcc
Confidence 1 11111 111112222221 11 367999999999973110 1 122222 2
Q ss_pred HhcccccCccCCCcEEEEEecCCCCcccccccc----CCCcceEeeCCCCcHHHHHHHHHHHHhhcccc-cCHHHHHHHH
Q 002386 696 EYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTS----SGRFDFHVQLPAPAASERKAILEHEIQRRSLE-CSDEILLDVA 770 (929)
Q Consensus 696 ~~~~~~~~~~~~~~VivIattn~~~~L~~~L~~----~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~-~~d~~l~~LA 770 (929)
.+.. .++++|+.+|..+.-|..|.+ .+.-...+.|+||+.++..+||+..+...... +-+..++.+|
T Consensus 284 ~lp~--------sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~A 355 (529)
T KOG2227|consen 284 KLPN--------SRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCA 355 (529)
T ss_pred cCCc--------ceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHH
Confidence 2221 158999999987754443332 22334688999999999999999988764432 3344688889
Q ss_pred hhcCCCChhhHHHH---HHHHHHHH
Q 002386 771 SKCDGYDAYDLEIL---VDRTVHAA 792 (929)
Q Consensus 771 ~~teG~s~~DL~~L---v~~A~~~a 792 (929)
+...|.+| |++.+ |++|+..+
T Consensus 356 rKvaa~SG-DlRkaLdv~R~aiEI~ 379 (529)
T KOG2227|consen 356 RKVAAPSG-DLRKALDVCRRAIEIA 379 (529)
T ss_pred HHhccCch-hHHHHHHHHHHHHHHH
Confidence 99988777 66543 55555444
No 248
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.48 E-value=2.1e-06 Score=95.25 Aligned_cols=155 Identities=13% Similarity=0.185 Sum_probs=102.9
Q ss_pred ccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccc----------------
Q 002386 557 SWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL---------------- 620 (929)
Q Consensus 557 ~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~---------------- 620 (929)
.|+....+.+.+.+.. ...+..+||+||.|+||+++|+++|+.+-.....
T Consensus 6 PWl~~~~~~l~~~~~~--------------~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g 71 (319)
T PRK06090 6 PWLVPVWQNWKAGLDA--------------GRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSG 71 (319)
T ss_pred ccHHHHHHHHHHHHHc--------------CCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcC
Confidence 3666666666653321 2334579999999999999999999988643210
Q ss_pred -eeeEEEEecccc-ccCchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhc
Q 002386 621 -VAHIVFVCCSRL-SLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG 698 (929)
Q Consensus 621 -~~~~~~V~~s~L-~~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~ 698 (929)
...+.++....- ..-.++.++.....+...+......|++||++|.+. ..-.+.|+..+++..
T Consensus 72 ~HPD~~~i~p~~~~~~I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~---------------~~AaNaLLKtLEEPp 136 (319)
T PRK06090 72 NHPDLHVIKPEKEGKSITVEQIRQCNRLAQESSQLNGYRLFVIEPADAMN---------------ESASNALLKTLEEPA 136 (319)
T ss_pred CCCCEEEEecCcCCCcCCHHHHHHHHHHHhhCcccCCceEEEecchhhhC---------------HHHHHHHHHHhcCCC
Confidence 012333333210 112344555433333233333445699999999985 255677888887754
Q ss_pred ccccCccCCCcEEEEEecCCCCccccccccCCCcceEeeCCCCcHHHHHHHHHH
Q 002386 699 EKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEH 752 (929)
Q Consensus 699 ~~~~~~~~~~~VivIattn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~ 752 (929)
. ++++|..|+.++.+.|.++| |.. .+.|++|+.++..+.|..
T Consensus 137 ~---------~t~fiL~t~~~~~lLpTI~S--RCq-~~~~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 137 P---------NCLFLLVTHNQKRLLPTIVS--RCQ-QWVVTPPSTAQAMQWLKG 178 (319)
T ss_pred C---------CeEEEEEECChhhChHHHHh--cce-eEeCCCCCHHHHHHHHHH
Confidence 3 47888888889999999999 877 789999999988877754
No 249
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.47 E-value=2.8e-07 Score=113.38 Aligned_cols=139 Identities=18% Similarity=0.206 Sum_probs=91.3
Q ss_pred CceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccc------cccCch----hhHHHHHHHHHHHHHhcCCcEE
Q 002386 590 PGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSR------LSLEKG----PIIRQALSNFISEALDHAPSIV 659 (929)
Q Consensus 590 ~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~------L~~~~~----~~~~~~l~~~f~~a~~~~PsVL 659 (929)
...+||.||..+|||+.+..+|++.+ ..|+.++-.+ +.|.++ |.+.-. ..++-+|. +.+..+
T Consensus 888 ~fP~LiQGpTSSGKTSMI~yla~~tg------hkfVRINNHEHTdlqeYiGTyvTdd~G~lsFk-EGvLVeAl-R~GyWI 959 (4600)
T COG5271 888 NFPLLIQGPTSSGKTSMILYLARETG------HKFVRINNHEHTDLQEYIGTYVTDDDGSLSFK-EGVLVEAL-RRGYWI 959 (4600)
T ss_pred CCcEEEecCCCCCcchHHHHHHHHhC------ccEEEecCcccchHHHHhhceeecCCCceeee-hhHHHHHH-hcCcEE
Confidence 35699999999999999999999988 5566665433 222222 111100 11222232 345689
Q ss_pred EEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhc-----ccccCccCCCcEEEEEecCCCC------cccccccc
Q 002386 660 IFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG-----EKRKSSCGIGPIAFVASAQSLE------KIPQSLTS 728 (929)
Q Consensus 660 ~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~-----~~~~~~~~~~~VivIattn~~~------~L~~~L~~ 728 (929)
+|||+.... ..+++.|.+++|.-+ .+..-...+.++.++||.|+|. -|..+++.
T Consensus 960 VLDELNLAp---------------TDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAFRN 1024 (4600)
T COG5271 960 VLDELNLAP---------------TDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAFRN 1024 (4600)
T ss_pred EeeccccCc---------------HHHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHHHHHHHHh
Confidence 999996543 367888888888543 2222233445688888888766 35677777
Q ss_pred CCCcceEeeCCCCcHHHHHHHHHHHH
Q 002386 729 SGRFDFHVQLPAPAASERKAILEHEI 754 (929)
Q Consensus 729 ~~Rf~~~i~l~~Pd~~eR~~IL~~~l 754 (929)
||- .++|..-..++...||+..+
T Consensus 1025 --RFl-E~hFddipedEle~ILh~rc 1047 (4600)
T COG5271 1025 --RFL-EMHFDDIPEDELEEILHGRC 1047 (4600)
T ss_pred --hhH-hhhcccCcHHHHHHHHhccC
Confidence 887 67788777888888887543
No 250
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.47 E-value=1e-06 Score=103.43 Aligned_cols=197 Identities=15% Similarity=0.162 Sum_probs=114.5
Q ss_pred ccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEecccccc
Q 002386 555 SLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSL 634 (929)
Q Consensus 555 ~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~~ 634 (929)
.+.|....++.+.+.+..+.. ...+++|+|++||||+++|+++....... ..+++.++|..+..
T Consensus 140 ~lig~s~~~~~l~~~i~~~a~-------------~~~~vli~Ge~GtGK~~lA~~ih~~s~~~---~~~~v~v~c~~~~~ 203 (445)
T TIGR02915 140 GLITSSPGMQKICRTIEKIAP-------------SDITVLLLGESGTGKEVLARALHQLSDRK---DKRFVAINCAAIPE 203 (445)
T ss_pred ceeecCHHHHHHHHHHHHHhC-------------CCCCEEEECCCCcCHHHHHHHHHHhCCcC---CCCeEEEECCCCCh
Confidence 455566666666665543322 23569999999999999999998765322 26789999998743
Q ss_pred CchhhHHHHHHHHHHH---------------HHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcc
Q 002386 635 EKGPIIRQALSNFISE---------------ALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGE 699 (929)
Q Consensus 635 ~~~~~~~~~l~~~f~~---------------a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~ 699 (929)
...+ . .+|.. .....+.+|||||++.|.. .+...|.+.++.-.-
T Consensus 204 ~~~~---~---~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~~---------------~~q~~l~~~l~~~~~ 262 (445)
T TIGR02915 204 NLLE---S---ELFGYEKGAFTGAVKQTLGKIEYAHGGTLFLDEIGDLPL---------------NLQAKLLRFLQERVI 262 (445)
T ss_pred HHHH---H---HhcCCCCCCcCCCccCCCCceeECCCCEEEEechhhCCH---------------HHHHHHHHHHhhCeE
Confidence 2111 1 11110 0112356999999999852 334444444443210
Q ss_pred c--ccCccCCCcEEEEEecCCC-------CccccccccCCCcceEeeCCCCcHHHHHH----HHHHHHhh----cc---c
Q 002386 700 K--RKSSCGIGPIAFVASAQSL-------EKIPQSLTSSGRFDFHVQLPAPAASERKA----ILEHEIQR----RS---L 759 (929)
Q Consensus 700 ~--~~~~~~~~~VivIattn~~-------~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~----IL~~~l~~----~~---~ 759 (929)
. ........++.+|++++.. ..+.+.|.. |+. .+.+..|...+|.+ +++.++.+ .+ .
T Consensus 263 ~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~-~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~ 339 (445)
T TIGR02915 263 ERLGGREEIPVDVRIVCATNQDLKRMIAEGTFREDLFY--RIA-EISITIPPLRSRDGDAVLLANAFLERFARELKRKTK 339 (445)
T ss_pred EeCCCCceeeeceEEEEecCCCHHHHHHcCCccHHHHH--Hhc-cceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCC
Confidence 0 0000111247888887653 123333332 332 23344444455543 44444432 12 3
Q ss_pred ccCHHHHHHHHhhcCCCChhhHHHHHHHHHHH
Q 002386 760 ECSDEILLDVASKCDGYDAYDLEILVDRTVHA 791 (929)
Q Consensus 760 ~~~d~~l~~LA~~teG~s~~DL~~Lv~~A~~~ 791 (929)
.++++.+..|.....-.+.++|++++++|+..
T Consensus 340 ~~~~~a~~~L~~~~wpgNvreL~~~i~~a~~~ 371 (445)
T TIGR02915 340 GFTDDALRALEAHAWPGNVRELENKVKRAVIM 371 (445)
T ss_pred CCCHHHHHHHHhCCCCChHHHHHHHHHHHHHh
Confidence 57888999999988777889999999998753
No 251
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.46 E-value=1.2e-07 Score=103.51 Aligned_cols=150 Identities=21% Similarity=0.344 Sum_probs=85.4
Q ss_pred CceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccccccCchhhHHHHHHHHHHHHHh-------cCCcEEEEc
Q 002386 590 PGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALD-------HAPSIVIFD 662 (929)
Q Consensus 590 ~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~~~~~~~~~~~l~~~f~~a~~-------~~PsVL~LD 662 (929)
++++||+||+|||||++++.+-+.+.... .....++++.... ...+++.++..++...+ .+..|+|||
T Consensus 33 ~~pvLl~G~~GtGKT~li~~~l~~l~~~~---~~~~~~~~s~~Tt--s~~~q~~ie~~l~k~~~~~~gP~~~k~lv~fiD 107 (272)
T PF12775_consen 33 GRPVLLVGPSGTGKTSLIQNFLSSLDSDK---YLVITINFSAQTT--SNQLQKIIESKLEKRRGRVYGPPGGKKLVLFID 107 (272)
T ss_dssp TEEEEEESSTTSSHHHHHHHHHHCSTTCC---EEEEEEES-TTHH--HHHHHHCCCTTECECTTEEEEEESSSEEEEEEE
T ss_pred CCcEEEECCCCCchhHHHHhhhccCCccc---cceeEeeccCCCC--HHHHHHHHhhcEEcCCCCCCCCCCCcEEEEEec
Confidence 47899999999999999998876654221 2244556654321 11222222211111111 123599999
Q ss_pred cccccccCCCCCCCCCCchhHHHHHHHHHHHHHH--hccc-ccCccCCCcEEEEEecCCCC---ccccccccCCCcceEe
Q 002386 663 NLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDE--YGEK-RKSSCGIGPIAFVASAQSLE---KIPQSLTSSGRFDFHV 736 (929)
Q Consensus 663 EiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~--~~~~-~~~~~~~~~VivIattn~~~---~L~~~L~~~~Rf~~~i 736 (929)
|++... .+..+.+ ...++|...++. +.+. ........++.++|++++.. .+++.|.| .|. .+
T Consensus 108 DlN~p~---~d~ygtq------~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r--~f~-i~ 175 (272)
T PF12775_consen 108 DLNMPQ---PDKYGTQ------PPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLR--HFN-IL 175 (272)
T ss_dssp TTT-S------TTS--------HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHT--TEE-EE
T ss_pred ccCCCC---CCCCCCc------CHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhh--heE-EE
Confidence 998765 3444433 455666666663 2221 22233445788999987633 47777776 555 88
Q ss_pred eCCCCcHHHHHHHHHHHHhh
Q 002386 737 QLPAPAASERKAILEHEIQR 756 (929)
Q Consensus 737 ~l~~Pd~~eR~~IL~~~l~~ 756 (929)
.++.|+.+....|+..++..
T Consensus 176 ~~~~p~~~sl~~If~~il~~ 195 (272)
T PF12775_consen 176 NIPYPSDESLNTIFSSILQS 195 (272)
T ss_dssp E----TCCHHHHHHHHHHHH
T ss_pred EecCCChHHHHHHHHHHHhh
Confidence 99999999999998887764
No 252
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.46 E-value=2.2e-06 Score=101.32 Aligned_cols=200 Identities=15% Similarity=0.103 Sum_probs=120.2
Q ss_pred cccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccccc
Q 002386 554 SSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLS 633 (929)
Q Consensus 554 ~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~ 633 (929)
.++.|....+.++.+.+..+.. ....+||+|++|||||++|+++....... ..+|+.++|..+.
T Consensus 138 ~~lig~s~~~~~l~~~~~~~~~-------------~~~~vli~Ge~GtGK~~lA~~ih~~s~~~---~~~~i~i~c~~~~ 201 (469)
T PRK10923 138 TDIIGEAPAMQDVFRIIGRLSR-------------SSISVLINGESGTGKELVAHALHRHSPRA---KAPFIALNMAAIP 201 (469)
T ss_pred ccceecCHHHHHHHHHHHHHhc-------------cCCeEEEEeCCCCcHHHHHHHHHhcCCCC---CCCeEeeeCCCCC
Confidence 3566677777777776543322 23569999999999999999998864322 2689999998874
Q ss_pred cCchhhHHHHHHHHHHH---------------HHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhc
Q 002386 634 LEKGPIIRQALSNFISE---------------ALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG 698 (929)
Q Consensus 634 ~~~~~~~~~~l~~~f~~---------------a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~ 698 (929)
..... ..+|.. .....+..|||||+|.+.. .+...|.+.++...
T Consensus 202 ~~~~~------~~lfg~~~g~~~~~~~~~~g~~~~a~~Gtl~l~~i~~l~~---------------~~q~~L~~~l~~~~ 260 (469)
T PRK10923 202 KDLIE------SELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMPL---------------DVQTRLLRVLADGQ 260 (469)
T ss_pred HHHHH------HHhcCCCCCCCCCCCcCCCCCeeECCCCEEEEeccccCCH---------------HHHHHHHHHHhcCc
Confidence 32111 111111 0112356899999999852 34445555555321
Q ss_pred cc--ccCccCCCcEEEEEecCCC-------CccccccccCCCc-ceEeeCCCCcH--HHHHHHHHHHHhh----cc---c
Q 002386 699 EK--RKSSCGIGPIAFVASAQSL-------EKIPQSLTSSGRF-DFHVQLPAPAA--SERKAILEHEIQR----RS---L 759 (929)
Q Consensus 699 ~~--~~~~~~~~~VivIattn~~-------~~L~~~L~~~~Rf-~~~i~l~~Pd~--~eR~~IL~~~l~~----~~---~ 759 (929)
-. .........+.+|+|++.. ..+.+.|.. || ...|.+|+... ++...++.++++. .+ .
T Consensus 261 ~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~ 338 (469)
T PRK10923 261 FYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFH--RLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAK 338 (469)
T ss_pred EEeCCCCCeEEeeEEEEEeCCCCHHHHHHcCCchHHHHH--HhcceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCC
Confidence 10 0000011247888887642 133444444 55 34555665432 3344455555542 22 2
Q ss_pred ccCHHHHHHHHhhcCCCChhhHHHHHHHHHHHH
Q 002386 760 ECSDEILLDVASKCDGYDAYDLEILVDRTVHAA 792 (929)
Q Consensus 760 ~~~d~~l~~LA~~teG~s~~DL~~Lv~~A~~~a 792 (929)
.++++.+..|.....-.+.++|++++++++..+
T Consensus 339 ~~~~~a~~~L~~~~wpgNv~eL~~~i~~~~~~~ 371 (469)
T PRK10923 339 LLHPETEAALTRLAWPGNVRQLENTCRWLTVMA 371 (469)
T ss_pred CcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC
Confidence 478889999999888888899999999987543
No 253
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=98.45 E-value=4.3e-07 Score=100.14 Aligned_cols=78 Identities=28% Similarity=0.440 Sum_probs=57.2
Q ss_pred cCCCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHcC--CceEEEecccccccccC
Q 002386 843 WDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACS--LRFISVKGPELLNKYIG 920 (929)
Q Consensus 843 w~dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~g--lnfIsVkg~ELl~kyIG 920 (929)
-+.+.|+.++|+..--.+++-. .+-.-+.++||.||||||||+||-++|+++| .+|+.+.|+|+++.-+-
T Consensus 23 ~~GlVGQ~~AReAagiiv~mIk--------~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiyS~e~k 94 (398)
T PF06068_consen 23 ADGLVGQEKAREAAGIIVDMIK--------EGKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIYSSEVK 94 (398)
T ss_dssp ETTEES-HHHHHHHHHHHHHHH--------TT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-BTTC-
T ss_pred cccccChHHHHHHHHHHHHHHh--------cccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceeeecccC
Confidence 3457788999887766665321 1222357899999999999999999999998 89999999999999999
Q ss_pred hhh---HHHhh
Q 002386 921 ASE---QAVRR 928 (929)
Q Consensus 921 ~SE---q~VRd 928 (929)
-|| |++|+
T Consensus 95 KTE~L~qa~Rr 105 (398)
T PF06068_consen 95 KTEALTQAFRR 105 (398)
T ss_dssp HHHHHHHHHHC
T ss_pred chHHHHHHHHH
Confidence 999 66664
No 254
>PF13173 AAA_14: AAA domain
Probab=98.44 E-value=9.9e-07 Score=85.17 Aligned_cols=120 Identities=22% Similarity=0.286 Sum_probs=71.8
Q ss_pred ceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccccccCchhhHHHHHHHHHHHHHhcCCcEEEEccccccccC
Q 002386 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISS 670 (929)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~ 670 (929)
+.++|+||.||||||+++.+++.+. ....+.++++.+.......... +.+.+.+.....+.+|||||++.+-
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~----~~~~~~yi~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~iDEiq~~~-- 74 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL----PPENILYINFDDPRDRRLADPD--LLEYFLELIKPGKKYIFIDEIQYLP-- 74 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc----ccccceeeccCCHHHHHHhhhh--hHHHHHHhhccCCcEEEEehhhhhc--
Confidence 4589999999999999999998875 1156788888765532211111 2233333222367899999998763
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCCCcEEEEEecCCCCcc----ccccccCCCcceEeeCCCCcHHH
Q 002386 671 SSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKI----PQSLTSSGRFDFHVQLPAPAASE 745 (929)
Q Consensus 671 ~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~VivIattn~~~~L----~~~L~~~~Rf~~~i~l~~Pd~~e 745 (929)
.....+..+.|... ++.++.|+.....+ ...+. ||+. .+++.|.+..|
T Consensus 75 --------------~~~~~lk~l~d~~~----------~~~ii~tgS~~~~l~~~~~~~l~--gr~~-~~~l~Plsf~E 126 (128)
T PF13173_consen 75 --------------DWEDALKFLVDNGP----------NIKIILTGSSSSLLSKDIAESLA--GRVI-EIELYPLSFRE 126 (128)
T ss_pred --------------cHHHHHHHHHHhcc----------CceEEEEccchHHHhhcccccCC--CeEE-EEEECCCCHHH
Confidence 23444444444321 24444444433333 23333 3665 77888887765
No 255
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.42 E-value=1e-06 Score=93.11 Aligned_cols=165 Identities=23% Similarity=0.328 Sum_probs=88.4
Q ss_pred CceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEecccccc-----------------------------------
Q 002386 590 PGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSL----------------------------------- 634 (929)
Q Consensus 590 ~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~~----------------------------------- 634 (929)
...++|+||.|+|||+|++.+.+.+..... ..+++.+.....
T Consensus 20 ~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~---~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 96 (234)
T PF01637_consen 20 SQHILLYGPRGSGKTSLLKEFINELKEKGY---KVVYIDFLEESNESSLRSFIEETSLADELSEALGISIPSITLEKISK 96 (234)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHCT--EE---CCCHHCCTTBSHHHHHHHHHHHHHHHCHCHHHHHHHCCTSTTEEEEC
T ss_pred CcEEEEEcCCcCCHHHHHHHHHHHhhhcCC---cEEEEecccchhhhHHHHHHHHHHHHHHHHHHHhhhcccccchhhhh
Confidence 367999999999999999999998843211 122222211000
Q ss_pred CchhhHHHHHHHHHHHHHhc-CCcEEEEccccccc-cCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCCCcEEE
Q 002386 635 EKGPIIRQALSNFISEALDH-APSIVIFDNLDSII-SSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAF 712 (929)
Q Consensus 635 ~~~~~~~~~l~~~f~~a~~~-~PsVL~LDEiD~L~-~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~Viv 712 (929)
.........+..++...... ...||+|||++.+. . .. ....+...|...++...... ++.+
T Consensus 97 ~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~--~~--------~~~~~~~~l~~~~~~~~~~~-------~~~~ 159 (234)
T PF01637_consen 97 DLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIA--SE--------EDKDFLKSLRSLLDSLLSQQ-------NVSI 159 (234)
T ss_dssp TS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBC--TT--------TTHHHHHHHHHHHHH----T-------TEEE
T ss_pred cchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhc--cc--------chHHHHHHHHHHHhhccccC-------CceE
Confidence 00112233444455554433 34799999999997 2 11 11356666666666533222 2444
Q ss_pred EEecCCCCccc------cccccCCCcceEeeCCCCcHHHHHHHHHHHHhhccccc--CHHHHHHHHhhcCCCCh
Q 002386 713 VASAQSLEKIP------QSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLEC--SDEILLDVASKCDGYDA 778 (929)
Q Consensus 713 Iattn~~~~L~------~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~--~d~~l~~LA~~teG~s~ 778 (929)
|.+........ ..+. +|+.. +.+++.+.++..++++..+... ..+ ++..++.+...+.|...
T Consensus 160 v~~~S~~~~~~~~~~~~~~~~--~~~~~-~~l~~l~~~e~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~gG~P~ 229 (234)
T PF01637_consen 160 VITGSSDSLMEEFLDDKSPLF--GRFSH-IELKPLSKEEAREFLKELFKEL-IKLPFSDEDIEEIYSLTGGNPR 229 (234)
T ss_dssp EEEESSHHHHHHTT-TTSTTT--T---E-EEE----HHHHHHHHHHHHHCC-------HHHHHHHHHHHTT-HH
T ss_pred EEECCchHHHHHhhcccCccc--cccce-EEEeeCCHHHHHHHHHHHHHHh-hcccCCHHHHHHHHHHhCCCHH
Confidence 44433322111 1122 36775 9999999999999999987765 544 88889999999998543
No 256
>PF05729 NACHT: NACHT domain
Probab=98.41 E-value=2.2e-06 Score=85.62 Aligned_cols=145 Identities=16% Similarity=0.230 Sum_probs=82.4
Q ss_pred eEEEECCCCcHHHHHHHHHHHHhccCccce---eeEEEEeccccccCchh-hHHHHHHH------------HHHHHHhcC
Q 002386 592 HILIHGPPGSGKTSLAKAVAKSLEHHKDLV---AHIVFVCCSRLSLEKGP-IIRQALSN------------FISEALDHA 655 (929)
Q Consensus 592 ~vLL~GppGtGKTtLaralA~~L~~~~~~~---~~~~~V~~s~L~~~~~~-~~~~~l~~------------~f~~a~~~~ 655 (929)
-++|+|+||+|||++++.++..+....... ..+++..+......... .+...+.. +........
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK 81 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence 389999999999999999999987654322 34556666554432111 11111111 111122345
Q ss_pred CcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCCCcEEEEEecCCCCc--cccccccCCCcc
Q 002386 656 PSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEK--IPQSLTSSGRFD 733 (929)
Q Consensus 656 PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~VivIattn~~~~--L~~~L~~~~Rf~ 733 (929)
..+|+||.+|.+...... .....+...|...+..... .++.++.|+++... +...+...
T Consensus 82 ~~llilDglDE~~~~~~~-------~~~~~~~~~l~~l~~~~~~--------~~~~liit~r~~~~~~~~~~~~~~---- 142 (166)
T PF05729_consen 82 RVLLILDGLDELEEQDQS-------QERQRLLDLLSQLLPQALP--------PGVKLIITSRPRAFPDLRRRLKQA---- 142 (166)
T ss_pred ceEEEEechHhcccchhh-------hHHHHHHHHHHHHhhhccC--------CCCeEEEEEcCChHHHHHHhcCCC----
Confidence 668999999998631110 1122444555555544111 12444444443222 33333321
Q ss_pred eEeeCCCCcHHHHHHHHHHHHh
Q 002386 734 FHVQLPAPAASERKAILEHEIQ 755 (929)
Q Consensus 734 ~~i~l~~Pd~~eR~~IL~~~l~ 755 (929)
..+.+.+.+.+++.++++.+++
T Consensus 143 ~~~~l~~~~~~~~~~~~~~~f~ 164 (166)
T PF05729_consen 143 QILELEPFSEEDIKQYLRKYFS 164 (166)
T ss_pred cEEEECCCCHHHHHHHHHHHhh
Confidence 4688999999999999998875
No 257
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=98.40 E-value=1.4e-06 Score=105.20 Aligned_cols=98 Identities=15% Similarity=0.191 Sum_probs=58.6
Q ss_pred cEEEEEecCCC--CccccccccCCCcc---eEeeCC---CCcHHHHHHHHHHH---Hhhc--ccccCHHHHHHHHhh---
Q 002386 709 PIAFVASAQSL--EKIPQSLTSSGRFD---FHVQLP---APAASERKAILEHE---IQRR--SLECSDEILLDVASK--- 772 (929)
Q Consensus 709 ~VivIattn~~--~~L~~~L~~~~Rf~---~~i~l~---~Pd~~eR~~IL~~~---l~~~--~~~~~d~~l~~LA~~--- 772 (929)
.+.+|++++.. ..+++.|++ ||. ..+.|+ +.+.+.|.++.+.. +++. ...++++.+..+.+.
T Consensus 268 dvrvIa~~~~~~l~~l~~~l~~--rf~~y~v~v~~~~~~~~~~e~~~~~~~~i~~~~~r~G~l~~~s~~Av~~Li~~~~R 345 (608)
T TIGR00764 268 DFILVASGNLDDLEGMHPALRS--RIRGYGYEVYMKDTMPDTPENRDKLVQFVAQEVKKDGRIPHFTRDAVEEIVREAQR 345 (608)
T ss_pred ceEEEEECCHHHHhhcCHHHHH--HhcCCeEEEEeeccCCCCHHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHHHH
Confidence 57889998864 568999998 888 555543 23456665554433 3333 234677766655432
Q ss_pred -cC-----CCChhhHHHHHHHHHHHHhhccccCCccccccccccccccccccc
Q 002386 773 -CD-----GYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQA 819 (929)
Q Consensus 773 -te-----G~s~~DL~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~lt~edf~~a 819 (929)
.+ ....++|..+++.|...|..+ +...++.+|+.+|
T Consensus 346 ~ag~r~~lsl~~R~L~~llR~A~~iA~~~-----------~~~~I~~ehV~~A 387 (608)
T TIGR00764 346 RAGRKDHLTLRLRELGGLVRAAGDIAKSS-----------GKVYVTAEHVLKA 387 (608)
T ss_pred HHhcccccCCCHHHHHHHHHHHHHHHHhc-----------CCceecHHHHHHH
Confidence 11 134688999999985544332 2234666666554
No 258
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.40 E-value=1.7e-06 Score=101.82 Aligned_cols=156 Identities=17% Similarity=0.142 Sum_probs=85.8
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccc-----------
Q 002386 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL----------- 620 (929)
Q Consensus 552 ~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~----------- 620 (929)
.+.++.|....++.+.- . .....+++|.||||||||++++.++..+......
T Consensus 190 d~~dv~Gq~~~~~al~~----a-------------a~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~ 252 (499)
T TIGR00368 190 DLKDIKGQQHAKRALEI----A-------------AAGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSL 252 (499)
T ss_pred CHHHhcCcHHHHhhhhh----h-------------ccCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccc
Confidence 56777777666443322 1 2233679999999999999999999765321110
Q ss_pred -----------eeeEEEEeccccccCchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHH
Q 002386 621 -----------VAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKF 689 (929)
Q Consensus 621 -----------~~~~~~V~~s~L~~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~ 689 (929)
..+|....++.......+.....--..+..| ...+|||||++.+- ....+.
T Consensus 253 ~g~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA---~~GvLfLDEi~e~~---------------~~~~~~ 314 (499)
T TIGR00368 253 VGKLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLA---HNGVLFLDELPEFK---------------RSVLDA 314 (499)
T ss_pred hhhhccccccccCCccccccccchhhhhCCccccchhhhhcc---CCCeEecCChhhCC---------------HHHHHH
Confidence 0111111111100000000000000012222 34599999998864 256666
Q ss_pred HHHHHHHhc----ccccCccCCCcEEEEEecCCC-----C------------------ccccccccCCCcceEeeCCCCc
Q 002386 690 LVDIMDEYG----EKRKSSCGIGPIAFVASAQSL-----E------------------KIPQSLTSSGRFDFHVQLPAPA 742 (929)
Q Consensus 690 L~~~ld~~~----~~~~~~~~~~~VivIattn~~-----~------------------~L~~~L~~~~Rf~~~i~l~~Pd 742 (929)
|...|+... ..........++.+|+++|+- . .+...|++ ||+..+.+++++
T Consensus 315 L~~~LE~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllD--R~dl~~~~~~~~ 392 (499)
T TIGR00368 315 LREPIEDGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLD--RIDLSVEVPLLP 392 (499)
T ss_pred HHHHHHcCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHh--hCCEEEEEcCCC
Confidence 777776432 111111112368999999863 1 36667777 999999999876
Q ss_pred HH
Q 002386 743 AS 744 (929)
Q Consensus 743 ~~ 744 (929)
.+
T Consensus 393 ~~ 394 (499)
T TIGR00368 393 PE 394 (499)
T ss_pred HH
Confidence 54
No 259
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.38 E-value=3.7e-06 Score=89.08 Aligned_cols=133 Identities=19% Similarity=0.222 Sum_probs=92.7
Q ss_pred CCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCCCcEEEEEecC-----------CCCccc
Q 002386 655 APSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQ-----------SLEKIP 723 (929)
Q Consensus 655 ~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~VivIattn-----------~~~~L~ 723 (929)
-|.||||||+++|- -.-+.+|.+.++.-. .++++++|-. +++-+|
T Consensus 288 vpGVLFIDEvHMLD---------------IEcFsFlNrAlE~d~---------~PiiimaTNrgit~iRGTn~~SphGiP 343 (454)
T KOG2680|consen 288 VPGVLFIDEVHMLD---------------IECFSFLNRALENDM---------APIIIMATNRGITRIRGTNYRSPHGIP 343 (454)
T ss_pred ccceEEEeeehhhh---------------hHHHHHHHHHhhhcc---------CcEEEEEcCCceEEeecCCCCCCCCCc
Confidence 37899999998873 245667777666422 1455555421 255677
Q ss_pred cccccCCCcceEeeCCCCcHHHHHHHHHHHHhhcccccCHHHHHHHHhhcCCCChhhHHHHHHHHHHHHhhccccCCccc
Q 002386 724 QSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAAVGRYLHSDSSF 803 (929)
Q Consensus 724 ~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~d~~l~~LA~~teG~s~~DL~~Lv~~A~~~a~~r~~~~~~~~ 803 (929)
-.|+. |+- .|...+++.++..+||+..++.....++++.++.|....+.-+-+---.|+..|...+.+|
T Consensus 344 ~D~lD--R~l-II~t~py~~~d~~~IL~iRc~EEdv~m~~~A~d~Lt~i~~~tsLRYai~Lit~a~~~~~kr-------- 412 (454)
T KOG2680|consen 344 IDLLD--RML-IISTQPYTEEDIKKILRIRCQEEDVEMNPDALDLLTKIGEATSLRYAIHLITAASLVCLKR-------- 412 (454)
T ss_pred HHHhh--hhh-eeecccCcHHHHHHHHHhhhhhhccccCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHh--------
Confidence 77776 655 7788999999999999999998889999998888877766655555556666666666666
Q ss_pred cccccccccccccccccccccc
Q 002386 804 EKHIKPTLVRDDFSQAMHEFLP 825 (929)
Q Consensus 804 ~~~~~~~lt~edf~~al~~~~P 825 (929)
....+..+|+..+..-|..
T Consensus 413 ---k~~~v~~~di~r~y~LFlD 431 (454)
T KOG2680|consen 413 ---KGKVVEVDDIERVYRLFLD 431 (454)
T ss_pred ---cCceeehhHHHHHHHHHhh
Confidence 2245667777766655543
No 260
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=98.37 E-value=3.5e-07 Score=105.13 Aligned_cols=78 Identities=23% Similarity=0.298 Sum_probs=60.2
Q ss_pred CCCchhhHHHHHHHHhcCCCchhhhhh-----CCCCCCceeEEecCCCCcHHHHHHHHHHHcCCceEEEeccccc-cccc
Q 002386 846 VGGLTDIQNAIKEMIELPSKFPNIFAQ-----APLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELL-NKYI 919 (929)
Q Consensus 846 IgGL~~vk~~L~e~le~p~k~~~if~~-----~~lr~~sGiLLyGpPGtGKT~LA~alA~e~glnfIsVkg~ELl-~kyI 919 (929)
|.|++++++.|...+..+.+ .+... -.....+++||+||||||||++|+++|+.++.+|+.+++.++. ..|+
T Consensus 73 ViGq~~ak~~l~~av~~~~~--r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyv 150 (412)
T PRK05342 73 VIGQERAKKVLSVAVYNHYK--RLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYV 150 (412)
T ss_pred eeChHHHHHHHHHHHHHHHH--hhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcc
Confidence 78999999999777643222 22111 1112457899999999999999999999999999999999876 4799
Q ss_pred ChhhHH
Q 002386 920 GASEQA 925 (929)
Q Consensus 920 G~SEq~ 925 (929)
|+...+
T Consensus 151 G~d~e~ 156 (412)
T PRK05342 151 GEDVEN 156 (412)
T ss_pred cchHHH
Confidence 987544
No 261
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=98.35 E-value=2.6e-07 Score=95.30 Aligned_cols=46 Identities=28% Similarity=0.399 Sum_probs=31.8
Q ss_pred ccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhc
Q 002386 553 VSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLE 615 (929)
Q Consensus 553 ~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~ 615 (929)
|.++.|++..+..+.=. .. | +.|+||+||||||||++|+.+...|.
T Consensus 2 f~dI~GQe~aKrAL~iA--Aa------------G---~h~lLl~GppGtGKTmlA~~l~~lLP 47 (206)
T PF01078_consen 2 FSDIVGQEEAKRALEIA--AA------------G---GHHLLLIGPPGTGKTMLARRLPSLLP 47 (206)
T ss_dssp TCCSSSTHHHHHHHHHH--HH------------C---C--EEEES-CCCTHHHHHHHHHHCS-
T ss_pred hhhhcCcHHHHHHHHHH--Hc------------C---CCCeEEECCCCCCHHHHHHHHHHhCC
Confidence 56778888776665431 11 1 26899999999999999999998765
No 262
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.35 E-value=8e-07 Score=96.39 Aligned_cols=76 Identities=25% Similarity=0.453 Sum_probs=59.6
Q ss_pred CCCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHcC--CceEEEecccccccccCh
Q 002386 844 DDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACS--LRFISVKGPELLNKYIGA 921 (929)
Q Consensus 844 ~dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~g--lnfIsVkg~ELl~kyIG~ 921 (929)
+-+.|+.++++.---++++- +.+-.-+.|+|+.||||||||.||-++|+++| .+|.++.|+|+++--+.-
T Consensus 39 dG~VGQ~~AReAaGvIv~mi--------k~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~isgsEiYS~E~kK 110 (450)
T COG1224 39 DGLVGQEEAREAAGVIVKMI--------KQGKMAGRGILIVGPPGTGKTALAMGIARELGEDVPFVAISGSEIYSLEVKK 110 (450)
T ss_pred CcccchHHHHHhhhHHHHHH--------HhCcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCceeeccceeeeecccH
Confidence 34678888877554443321 12334578999999999999999999999997 789999999999999999
Q ss_pred hh---HHHh
Q 002386 922 SE---QAVR 927 (929)
Q Consensus 922 SE---q~VR 927 (929)
|| |++|
T Consensus 111 TE~L~qa~R 119 (450)
T COG1224 111 TEALTQALR 119 (450)
T ss_pred HHHHHHHHH
Confidence 98 4554
No 263
>PRK08116 hypothetical protein; Validated
Probab=98.35 E-value=1.7e-06 Score=94.24 Aligned_cols=72 Identities=24% Similarity=0.368 Sum_probs=46.5
Q ss_pred CceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccccccCchhhH----HHHHHHHHHHHHhcCCcEEEEcccc
Q 002386 590 PGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPII----RQALSNFISEALDHAPSIVIFDNLD 665 (929)
Q Consensus 590 ~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~~~~~~~~----~~~l~~~f~~a~~~~PsVL~LDEiD 665 (929)
+.+++|+|++|||||+||.++|+++.... ..+++++..++........ .....++++.. ....+|+|||+.
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~---~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l--~~~dlLviDDlg 188 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKG---VPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSL--VNADLLILDDLG 188 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcC---CeEEEEEHHHHHHHHHHHHhccccccHHHHHHHh--cCCCEEEEeccc
Confidence 35799999999999999999999986442 5677887766543211110 01111222222 345699999995
Q ss_pred c
Q 002386 666 S 666 (929)
Q Consensus 666 ~ 666 (929)
.
T Consensus 189 ~ 189 (268)
T PRK08116 189 A 189 (268)
T ss_pred C
Confidence 4
No 264
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.34 E-value=1.4e-05 Score=89.18 Aligned_cols=53 Identities=23% Similarity=0.310 Sum_probs=42.0
Q ss_pred ccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhcc
Q 002386 555 SLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEH 616 (929)
Q Consensus 555 ~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~ 616 (929)
++.|++++++++.+.+...... . ....+.++|+|||||||||+|+++|+.++.
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g--------~-~~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQG--------L-EERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhc--------C-CCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 6889999999999987643321 1 123466899999999999999999999975
No 265
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=98.33 E-value=1.2e-06 Score=103.49 Aligned_cols=41 Identities=27% Similarity=0.209 Sum_probs=32.3
Q ss_pred CCCCCCceeEEecCCCCcHHHHHHHHHHHc---CCceEEEeccc
Q 002386 873 APLRLRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPE 913 (929)
Q Consensus 873 ~~lr~~sGiLLyGpPGtGKT~LA~alA~e~---glnfIsVkg~E 913 (929)
.|+..++-+|+.||||+|||+|+..++.+. |-+.+-+.+-|
T Consensus 258 GG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eE 301 (484)
T TIGR02655 258 GGFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEE 301 (484)
T ss_pred CCccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeC
Confidence 367788899999999999999998877643 66666666554
No 266
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.33 E-value=1e-06 Score=86.23 Aligned_cols=81 Identities=20% Similarity=0.394 Sum_probs=56.0
Q ss_pred cchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccccccCch
Q 002386 558 WMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKG 637 (929)
Q Consensus 558 g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~~~~~ 637 (929)
|....++++.+++..+... ..+|||+|++||||+++|+++....... ...++.++|..+.
T Consensus 2 G~S~~~~~l~~~l~~~a~~-------------~~pvli~GE~GtGK~~~A~~lh~~~~~~---~~~~~~~~~~~~~---- 61 (138)
T PF14532_consen 2 GKSPAMRRLRRQLERLAKS-------------SSPVLITGEPGTGKSLLARALHRYSGRA---NGPFIVIDCASLP---- 61 (138)
T ss_dssp -SCHHHHHHHHHHHHHHCS-------------SS-EEEECCTTSSHHHHHHCCHHTTTTC---CS-CCCCCHHCTC----
T ss_pred CCCHHHHHHHHHHHHHhCC-------------CCcEEEEcCCCCCHHHHHHHHHhhcCcc---CCCeEEechhhCc----
Confidence 4566778888877655443 2679999999999999999999865432 2456666776644
Q ss_pred hhHHHHHHHHHHHHHhcCCcEEEEccccccc
Q 002386 638 PIIRQALSNFISEALDHAPSIVIFDNLDSII 668 (929)
Q Consensus 638 ~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~ 668 (929)
.++++.+ .+..|||+|+|.+-
T Consensus 62 -------~~~l~~a---~~gtL~l~~i~~L~ 82 (138)
T PF14532_consen 62 -------AELLEQA---KGGTLYLKNIDRLS 82 (138)
T ss_dssp -------HHHHHHC---TTSEEEEECGCCS-
T ss_pred -------HHHHHHc---CCCEEEECChHHCC
Confidence 2344443 66799999999985
No 267
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.31 E-value=6.7e-06 Score=96.80 Aligned_cols=197 Identities=15% Similarity=0.185 Sum_probs=113.8
Q ss_pred ccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEecccccc
Q 002386 555 SLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSL 634 (929)
Q Consensus 555 ~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~~ 634 (929)
.+.|....+.++.+.+..+... ...+|++|++||||+++|+++...... ...+++.++|..+..
T Consensus 144 ~ii~~S~~~~~~~~~~~~~a~~-------------~~~vli~Ge~GtGK~~lA~~ih~~s~~---~~~~~~~i~c~~~~~ 207 (457)
T PRK11361 144 HILTNSPAMMDICKDTAKIALS-------------QASVLISGESGTGKELIARAIHYNSRR---AKGPFIKVNCAALPE 207 (457)
T ss_pred ceecccHHHhHHHHHHHHHcCC-------------CcEEEEEcCCCccHHHHHHHHHHhCCC---CCCCeEEEECCCCCH
Confidence 3455566666676665443332 256999999999999999999875432 226799999988743
Q ss_pred CchhhHHHHHHHHHHH---------------HHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhc-
Q 002386 635 EKGPIIRQALSNFISE---------------ALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG- 698 (929)
Q Consensus 635 ~~~~~~~~~l~~~f~~---------------a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~- 698 (929)
.... . .+|.. .......+|||||+|.+.+ .+...|...++...
T Consensus 208 ~~~~---~---~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ld~i~~l~~---------------~~q~~L~~~l~~~~~ 266 (457)
T PRK11361 208 SLLE---S---ELFGHEKGAFTGAQTLRQGLFERANEGTLLLDEIGEMPL---------------VLQAKLLRILQEREF 266 (457)
T ss_pred HHHH---H---HhcCCCCCCCCCCCCCCCCceEECCCCEEEEechhhCCH---------------HHHHHHHHHHhcCcE
Confidence 2111 1 11110 0112346999999999852 33444555554321
Q ss_pred -ccccCccCCCcEEEEEecCCCC-------ccccccccCCCcceEeeCCCCcHHHHHH----HHHHHHhhc------c-c
Q 002386 699 -EKRKSSCGIGPIAFVASAQSLE-------KIPQSLTSSGRFDFHVQLPAPAASERKA----ILEHEIQRR------S-L 759 (929)
Q Consensus 699 -~~~~~~~~~~~VivIattn~~~-------~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~----IL~~~l~~~------~-~ 759 (929)
..........++.+|++++..- .+.+.|.. |+. .+.+..|...+|.+ ++..++.+. . .
T Consensus 267 ~~~~~~~~~~~~~rii~~t~~~l~~~~~~g~~~~~l~~--~l~-~~~i~~ppLreR~~di~~l~~~~l~~~~~~~~~~~~ 343 (457)
T PRK11361 267 ERIGGHQTIKVDIRIIAATNRDLQAMVKEGTFREDLFY--RLN-VIHLILPPLRDRREDISLLANHFLQKFSSENQRDII 343 (457)
T ss_pred EeCCCCceeeeceEEEEeCCCCHHHHHHcCCchHHHHH--Hhc-cceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCC
Confidence 0000011112478888887521 12222222 222 34455555555432 334444321 1 3
Q ss_pred ccCHHHHHHHHhhcCCCChhhHHHHHHHHHHH
Q 002386 760 ECSDEILLDVASKCDGYDAYDLEILVDRTVHA 791 (929)
Q Consensus 760 ~~~d~~l~~LA~~teG~s~~DL~~Lv~~A~~~ 791 (929)
.++++.+..|.....-.+.++|++++++|+..
T Consensus 344 ~~~~~a~~~L~~~~wpgNv~eL~~~~~~~~~~ 375 (457)
T PRK11361 344 DIDPMAMSLLTAWSWPGNIRELSNVIERAVVM 375 (457)
T ss_pred CcCHHHHHHHHcCCCCCcHHHHHHHHHHHHHh
Confidence 57888899998888777889999999998743
No 268
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.29 E-value=9.2e-07 Score=99.42 Aligned_cols=72 Identities=21% Similarity=0.337 Sum_probs=62.3
Q ss_pred CccCCCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHcCCceEEEecc
Q 002386 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGP 912 (929)
Q Consensus 841 ~~w~dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~glnfIsVkg~ 912 (929)
..++.+.-=.+.|+.|.+-++-..+...-|.+.|...++|.|||||||||||++..|+|..++++..-+.-.
T Consensus 198 stF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt 269 (457)
T KOG0743|consen 198 STFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELT 269 (457)
T ss_pred CCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeec
Confidence 466667666788888888888888999999999999999999999999999999999999998886655443
No 269
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.28 E-value=6.7e-06 Score=96.99 Aligned_cols=202 Identities=14% Similarity=0.107 Sum_probs=118.7
Q ss_pred ccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEecccccc
Q 002386 555 SLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSL 634 (929)
Q Consensus 555 ~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~~ 634 (929)
.+.|....+.++.+.+..+.. ....+++.|.+||||+++|+++....... ..+++.++|..+..
T Consensus 135 ~lig~s~~~~~v~~~i~~~a~-------------~~~~vli~Ge~GtGK~~~A~~ih~~~~~~---~~~~~~~~c~~~~~ 198 (463)
T TIGR01818 135 ELIGEAPAMQEVFRAIGRLSR-------------SDITVLINGESGTGKELVARALHRHSPRA---NGPFIALNMAAIPK 198 (463)
T ss_pred ceeecCHHHHHHHHHHHHHhC-------------cCCeEEEECCCCCCHHHHHHHHHHhCCCC---CCCeEEEeCCCCCH
Confidence 355666677777776644322 22569999999999999999998864322 26789999988743
Q ss_pred CchhhHHHHH-H---HHHH--------HHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccc--
Q 002386 635 EKGPIIRQAL-S---NFIS--------EALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEK-- 700 (929)
Q Consensus 635 ~~~~~~~~~l-~---~~f~--------~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~-- 700 (929)
.... ..+ . ..|. ......+..|||||++.+-. .+...|.+.++...-.
T Consensus 199 ~~~~---~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~ei~~l~~---------------~~q~~ll~~l~~~~~~~~ 260 (463)
T TIGR01818 199 DLIE---SELFGHEKGAFTGANTRRQGRFEQADGGTLFLDEIGDMPL---------------DAQTRLLRVLADGEFYRV 260 (463)
T ss_pred HHHH---HHhcCCCCCCCCCcccCCCCcEEECCCCeEEEEchhhCCH---------------HHHHHHHHHHhcCcEEEC
Confidence 2211 100 0 0000 01112357899999998852 2334444444432100
Q ss_pred ccCccCCCcEEEEEecCCCC-------ccccccccCCCcc-eEeeCCCCc--HHHHHHHHHHHHhhc----c---cccCH
Q 002386 701 RKSSCGIGPIAFVASAQSLE-------KIPQSLTSSGRFD-FHVQLPAPA--ASERKAILEHEIQRR----S---LECSD 763 (929)
Q Consensus 701 ~~~~~~~~~VivIattn~~~-------~L~~~L~~~~Rf~-~~i~l~~Pd--~~eR~~IL~~~l~~~----~---~~~~d 763 (929)
........++.+|++++..- .+.+.|.. |+. ..|++|+.. .++...++..++... + ..+++
T Consensus 261 ~~~~~~~~~~rii~~~~~~l~~~~~~~~f~~~L~~--rl~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~ 338 (463)
T TIGR01818 261 GGRTPIKVDVRIVAATHQNLEALVRQGKFREDLFH--RLNVIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDP 338 (463)
T ss_pred CCCceeeeeeEEEEeCCCCHHHHHHcCCcHHHHHH--HhCcceecCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCH
Confidence 00000112467888876421 22333333 333 467777765 455666666655431 2 35788
Q ss_pred HHHHHHHhhcCCCChhhHHHHHHHHHHHH
Q 002386 764 EILLDVASKCDGYDAYDLEILVDRTVHAA 792 (929)
Q Consensus 764 ~~l~~LA~~teG~s~~DL~~Lv~~A~~~a 792 (929)
+.+..|.....-.+-++|++++++++..+
T Consensus 339 ~a~~~L~~~~wpgNvreL~~~~~~~~~~~ 367 (463)
T TIGR01818 339 EALERLKQLRWPGNVRQLENLCRWLTVMA 367 (463)
T ss_pred HHHHHHHhCCCCChHHHHHHHHHHHHHhC
Confidence 88999988876667799999999987544
No 270
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.28 E-value=2.5e-05 Score=92.30 Aligned_cols=201 Identities=15% Similarity=0.262 Sum_probs=107.5
Q ss_pred ccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEE-eccc
Q 002386 553 VSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFV-CCSR 631 (929)
Q Consensus 553 ~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V-~~s~ 631 (929)
+.+|....+-++++.+-+...+. +....+-+||+||+||||||+++.+|++++.. +... +...
T Consensus 18 ~~eLavhkkKv~eV~~wl~~~~~----------~~~~~~iLlLtGP~G~GKtttv~~La~elg~~------v~Ew~np~~ 81 (519)
T PF03215_consen 18 LDELAVHKKKVEEVRSWLEEMFS----------GSSPKRILLLTGPSGCGKTTTVKVLAKELGFE------VQEWINPVS 81 (519)
T ss_pred HHHhhccHHHHHHHHHHHHHHhc----------cCCCcceEEEECCCCCCHHHHHHHHHHHhCCe------eEEecCCCC
Confidence 44555566666777765543222 12233568899999999999999999999832 2211 1111
Q ss_pred ----------cccC--chh---hHHHHHHHH-HHHHHh-----------cCCcEEEEccccccccCCCCCCCCCCchhHH
Q 002386 632 ----------LSLE--KGP---IIRQALSNF-ISEALD-----------HAPSIVIFDNLDSIISSSSDPEGSQPSTSVI 684 (929)
Q Consensus 632 ----------L~~~--~~~---~~~~~l~~~-f~~a~~-----------~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~ 684 (929)
+.+. ..+ .-...+.++ +..+.. ..+.||+|||+=.++. ... .
T Consensus 82 ~~~~~~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~----------~~~-~ 150 (519)
T PF03215_consen 82 FRESDNQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFH----------RDT-S 150 (519)
T ss_pred ccccccccccccccccccccccchhhhhccccccccccccccccCCCcCCCceEEEeeccccccc----------hhH-H
Confidence 0000 000 011123333 221111 2467999999966552 011 2
Q ss_pred HHHHHHHHHHHHhcccccCccCCCcEEEEEe-cCC------CC--------ccccccccCCCcceEeeCCCCcHHHHHHH
Q 002386 685 ALTKFLVDIMDEYGEKRKSSCGIGPIAFVAS-AQS------LE--------KIPQSLTSSGRFDFHVQLPAPAASERKAI 749 (929)
Q Consensus 685 ~l~~~L~~~ld~~~~~~~~~~~~~~VivIat-tn~------~~--------~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~I 749 (929)
.+-+.|...+.. .. . .+++||.| +.. .. -+++.+....+. ..|.|.+-...-....
T Consensus 151 ~f~~~L~~~l~~----~~-~---~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i-~~I~FNpIa~T~mkKa 221 (519)
T PF03215_consen 151 RFREALRQYLRS----SR-C---LPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGI-TRIKFNPIAPTFMKKA 221 (519)
T ss_pred HHHHHHHHHHHc----CC-C---CCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCc-eEEEecCCCHHHHHHH
Confidence 333333333321 11 1 15777766 111 11 234555443333 4789999888888777
Q ss_pred HHHHHhhc-----c-cccC--HHHHHHHHhhcCCCChhhHHHHHHHHHHHHh
Q 002386 750 LEHEIQRR-----S-LECS--DEILLDVASKCDGYDAYDLEILVDRTVHAAV 793 (929)
Q Consensus 750 L~~~l~~~-----~-~~~~--d~~l~~LA~~teG~s~~DL~~Lv~~A~~~a~ 793 (929)
|++.+... + ...+ ...++.|+..+.| ||+.++...-..+.
T Consensus 222 L~rI~~~E~~~~~~~~~~p~~~~~l~~I~~~s~G----DIRsAIn~LQf~~~ 269 (519)
T PF03215_consen 222 LKRILKKEARSSSGKNKVPDKQSVLDSIAESSNG----DIRSAINNLQFWCL 269 (519)
T ss_pred HHHHHHHHhhhhcCCccCCChHHHHHHHHHhcCc----hHHHHHHHHHHHhc
Confidence 77776643 1 1222 3357888887666 88877766555554
No 271
>PRK15115 response regulator GlrR; Provisional
Probab=98.27 E-value=1.1e-05 Score=94.65 Aligned_cols=173 Identities=17% Similarity=0.270 Sum_probs=103.7
Q ss_pred ceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccccccCchhhHHHHHHHHHHHH---------------HhcC
Q 002386 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEA---------------LDHA 655 (929)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~~~~~~~~~~~l~~~f~~a---------------~~~~ 655 (929)
..++|+|++|||||++|+++.+..... ..+++.++|..+.....+. .+|..+ ....
T Consensus 158 ~~vli~Ge~GtGk~~lA~~ih~~s~r~---~~~f~~i~c~~~~~~~~~~------~lfg~~~~~~~~~~~~~~g~~~~a~ 228 (444)
T PRK15115 158 VSVLINGQSGTGKEILAQAIHNASPRA---SKPFIAINCGALPEQLLES------ELFGHARGAFTGAVSNREGLFQAAE 228 (444)
T ss_pred CeEEEEcCCcchHHHHHHHHHHhcCCC---CCCeEEEeCCCCCHHHHHH------HhcCCCcCCCCCCccCCCCcEEECC
Confidence 469999999999999999998865322 2679999998874322111 112110 1123
Q ss_pred CcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccc--ccCccCCCcEEEEEecCCCCccccccccCCCcc
Q 002386 656 PSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEK--RKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFD 733 (929)
Q Consensus 656 PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~--~~~~~~~~~VivIattn~~~~L~~~L~~~~Rf~ 733 (929)
...|||||+|.|.. .+...|...++...-. ........++.+|+|++. ++...+.+ |+|.
T Consensus 229 ~gtl~l~~i~~l~~---------------~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~--~l~~~~~~-~~f~ 290 (444)
T PRK15115 229 GGTLFLDEIGDMPA---------------PLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHR--DLPKAMAR-GEFR 290 (444)
T ss_pred CCEEEEEccccCCH---------------HHHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCC--CHHHHHHc-CCcc
Confidence 46999999999852 3344455555432110 000011125788888874 23333222 3441
Q ss_pred -------eEeeCCCCcHHHHH----HHHHHHHhh----cc---cccCHHHHHHHHhhcCCCChhhHHHHHHHHHH
Q 002386 734 -------FHVQLPAPAASERK----AILEHEIQR----RS---LECSDEILLDVASKCDGYDAYDLEILVDRTVH 790 (929)
Q Consensus 734 -------~~i~l~~Pd~~eR~----~IL~~~l~~----~~---~~~~d~~l~~LA~~teG~s~~DL~~Lv~~A~~ 790 (929)
..+.+..|...+|. .+++.+++. .+ ..++++.+..|.......+.++|++++++|+.
T Consensus 291 ~~l~~~l~~~~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~WpgNvreL~~~i~~~~~ 365 (444)
T PRK15115 291 EDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQCVA 365 (444)
T ss_pred HHHHHhhceeeecCCChHhccccHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHH
Confidence 13344555555553 244444432 12 24789999999998877788999999999864
No 272
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.26 E-value=1.2e-06 Score=92.86 Aligned_cols=66 Identities=27% Similarity=0.461 Sum_probs=54.6
Q ss_pred CccCCCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHcCCceEEEecccc
Q 002386 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPEL 914 (929)
Q Consensus 841 ~~w~dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~glnfIsVkg~EL 914 (929)
..|++..|.+.+|+.|+-.+.-... .-...-++|||||||.|||+||..+|.|.|.|+-...||-|
T Consensus 23 ~~l~efiGQ~~vk~~L~ifI~AAk~--------r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~l 88 (332)
T COG2255 23 KTLDEFIGQEKVKEQLQIFIKAAKK--------RGEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPAL 88 (332)
T ss_pred ccHHHhcChHHHHHHHHHHHHHHHh--------cCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccc
Confidence 5788899999999999887763322 22345689999999999999999999999999999888754
No 273
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=98.25 E-value=9.4e-07 Score=110.20 Aligned_cols=77 Identities=25% Similarity=0.366 Sum_probs=59.1
Q ss_pred CCCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHcCCceEEEeccccc--------
Q 002386 844 DDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELL-------- 915 (929)
Q Consensus 844 ~dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~glnfIsVkg~ELl-------- 915 (929)
+++.|++++++.+.+.+.++.... .. .+..+||+||||||||++|+++|++++.+|+.+....+.
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~------~~-~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~ 392 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRG------KM-KGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGH 392 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhc------CC-CCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCC
Confidence 458899999999999776542211 11 223699999999999999999999999999998654432
Q ss_pred -ccccChhhHHHh
Q 002386 916 -NKYIGASEQAVR 927 (929)
Q Consensus 916 -~kyIG~SEq~VR 927 (929)
.+|+|+....++
T Consensus 393 ~~~~~g~~~g~i~ 405 (775)
T TIGR00763 393 RRTYVGAMPGRII 405 (775)
T ss_pred CCceeCCCCchHH
Confidence 478998876654
No 274
>PF03152 UFD1: Ubiquitin fusion degradation protein UFD1; InterPro: IPR004854 Post-translational ubiquitin-protein conjugates are recognised for degradation by the ubiquitin fusion degradation (UFD) pathway. Several proteins involved in this pathway have been identified []. This family includes UFD1, a 40kDa protein that is essential for vegetative cell viability []. The human UFD1 gene is expressed at high levels during embryogenesis, especially in the eyes and in the inner ear primordia and is thought to be important in the determination of ectoderm-derived structures, including neural crest cells. In addition, this gene is deleted in the CATCH-22 (cardiac defects, abnormal facies, thymic hypoplasia, cleft palate and hypocalcaemia with deletions on chromosome 22) syndrome. This clinical syndrome is associated with a variety of developmental defects, all characterised by microdeletions on 22q11.2. Two such developmental defects are the DiGeorge syndrome OMIM:188400, and the velo-cardio- facial syndrome OMIM:145410. Several of the abnormalities associated with these conditions are thought to be due to defective neural crest cell differentiation []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1ZC1_A 2YUJ_A.
Probab=98.24 E-value=1.6e-05 Score=80.15 Aligned_cols=150 Identities=16% Similarity=0.202 Sum_probs=111.6
Q ss_pred ccceeCCHHHHHHHhhccccCCCCceEEEEEEeC-CCCeEEEEecCCcCCCCeeeecHhHHhhcCCCCCCEEEEEEeecC
Q 002386 13 NCFVSLPLKLIETLESTRSAHLLPQVLSLELRSR-SNQRWVVAWSGATSSSSFIEVARQFAECISLADHTIVQVRVVSNV 91 (929)
Q Consensus 13 ~~~v~lp~~l~~~l~~~~~~~~~~q~~~~e~~~~-~~~~~~~gw~g~~s~~~~iei~~~~a~~~gl~~~~~v~~~~~~~~ 91 (929)
+.=|-||++..+.|.+.+.. .-+..+|+.. .++..|+|=-..++..++|-+.+-+.+.|||++|+.|.|+ ..+.
T Consensus 25 gdKiiLP~s~L~~L~~~~~~----~P~~F~i~n~~~~~~th~GVlEFsA~eG~i~lP~wmm~~L~l~~g~~V~v~-~~~L 99 (176)
T PF03152_consen 25 GDKIILPPSALDELSRLNIP----YPMLFEISNPDNGKRTHCGVLEFSAEEGTIYLPPWMMQNLGLQEGDIVRVE-YVSL 99 (176)
T ss_dssp TTEEEE-HHHHHHHHHTT------SS-EEEEEETTTTEEEEEEEEEE--CTTEEEE-CHHHHHHT--TTEEEEEE-EEE-
T ss_pred CCeEEcCHHHHHHHHhccCC----CCEEEEEecCCCCcEEEEEEEEeEcCCCeEEeCccHHhhcCCCCCCEEEEE-EeEC
Confidence 34478999999999986542 4467788765 4467999988888888999999999999999999999999 5799
Q ss_pred ccceeEEEecCCcchhHHHHhcHHHHHHHHhcccceecCCCeEeEEecCceEEEEEEeccCCCCCeEEecCCCeEEEcc
Q 002386 92 LKATLVTIEPLTEDDWEVLELNSEHAEAAILNQVRIVHEAMRFPLWLHGRTIITFHVVSTFPKKPVVQLVPGTEVAVAP 170 (929)
Q Consensus 92 ~~~~~v~veP~t~dDWEi~el~a~~le~~lL~Q~r~v~~~~~~~~~~~~~~~~~~~v~~~~p~~~~~~l~~~tev~vaP 170 (929)
|.++.|.+.|.+.+=.+ |+-+-..||.+| .+--+++.|.++.+.- ++..-.|.|..+.|+..+..+..|-||=++|
T Consensus 100 Pkgt~vkLqP~~~~F~~-i~n~KavLE~~L-r~ystLT~Gd~I~i~~-~~~~y~l~V~e~kP~~aV~IidTDl~vDf~~ 175 (176)
T PF03152_consen 100 PKGTFVKLQPQSSDFLD-ISNPKAVLERAL-RNYSTLTKGDTISIEY-NNKTYELDVVEVKPENAVSIIDTDLEVDFEP 175 (176)
T ss_dssp ---SEEEEEESCHHHHC-SS-HHHHHHHHH-CC-SEEETTSEEEEEC-TTEEEEEEEEEECSSSCEE-SSS-SEEEE--
T ss_pred CCCCEEEEeECCCcccc-ccchHHHHHhhc-ccCceeecCCEEEEEe-CCEEEEEEEEEEcCCCEEEEEeCceEEEecC
Confidence 99999999999875344 566667799999 8899999999999996 5667799999999999899999999887766
No 275
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=98.21 E-value=1.6e-06 Score=99.23 Aligned_cols=78 Identities=22% Similarity=0.331 Sum_probs=58.2
Q ss_pred CCCCchhhHHHHHHHHhcCCCchhhhh--hCC----C-CCCceeEEecCCCCcHHHHHHHHHHHcCCceEEEeccccc-c
Q 002386 845 DVGGLTDIQNAIKEMIELPSKFPNIFA--QAP----L-RLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELL-N 916 (929)
Q Consensus 845 dIgGL~~vk~~L~e~le~p~k~~~if~--~~~----l-r~~sGiLLyGpPGtGKT~LA~alA~e~glnfIsVkg~ELl-~ 916 (929)
.+.|++++++.+...+-.- |..+.. ..+ + ...+++||+||||||||++|+++|+.++.+|+.+++..|. .
T Consensus 78 ~ViGQe~A~~~l~~av~~h--~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~ 155 (413)
T TIGR00382 78 YVIGQEQAKKVLSVAVYNH--YKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEA 155 (413)
T ss_pred eecCHHHHHHHHHHHHHHH--HhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhcccc
Confidence 3689999999998776321 122111 001 1 1246899999999999999999999999999999998876 4
Q ss_pred cccChhhH
Q 002386 917 KYIGASEQ 924 (929)
Q Consensus 917 kyIG~SEq 924 (929)
.|+|+.+.
T Consensus 156 gyvG~d~e 163 (413)
T TIGR00382 156 GYVGEDVE 163 (413)
T ss_pred ccccccHH
Confidence 79999743
No 276
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.19 E-value=1.9e-05 Score=96.89 Aligned_cols=144 Identities=17% Similarity=0.091 Sum_probs=79.0
Q ss_pred CCCceEEEECCCCcHHHHHHHHHHHHhccCc-cceeeEEEEeccccccCchhhHHHHHHHHHHH---HHhcCCcEEEEcc
Q 002386 588 PLPGHILIHGPPGSGKTSLAKAVAKSLEHHK-DLVAHIVFVCCSRLSLEKGPIIRQALSNFISE---ALDHAPSIVIFDN 663 (929)
Q Consensus 588 ~~~~~vLL~GppGtGKTtLaralA~~L~~~~-~~~~~~~~V~~s~L~~~~~~~~~~~l~~~f~~---a~~~~PsVL~LDE 663 (929)
+..-+|||.|.||||||.+||++++...... .....+..++|.......... ...+..+ .......+++|||
T Consensus 490 RgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~vgLTa~~~~~d~~----tG~~~le~GaLvlAdgGtL~IDE 565 (915)
T PTZ00111 490 RGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSVGLTASIKFNESD----NGRAMIQPGAVVLANGGVCCIDE 565 (915)
T ss_pred cCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCccccccchhhhcccc----cCcccccCCcEEEcCCCeEEecc
Confidence 4445899999999999999999998543111 000223333343321100000 0000000 0012245999999
Q ss_pred ccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhc---cc-ccCccCCCcEEEEEecCCCC-------------cccccc
Q 002386 664 LDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG---EK-RKSSCGIGPIAFVASAQSLE-------------KIPQSL 726 (929)
Q Consensus 664 iD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~---~~-~~~~~~~~~VivIattn~~~-------------~L~~~L 726 (929)
+|.+-. .....|...|+.-. .+ .....-..++.|||++|+.. .+++.|
T Consensus 566 idkms~---------------~~Q~aLlEaMEqqtIsI~KaGi~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~L 630 (915)
T PTZ00111 566 LDKCHN---------------ESRLSLYEVMEQQTVTIAKAGIVATLKAETAILASCNPINSRYNKNKAVIENINISPSL 630 (915)
T ss_pred hhhCCH---------------HHHHHHHHHHhCCEEEEecCCcceecCCCeEEEEEcCCcccccCcccCcccccCCChHH
Confidence 999742 34455666665422 11 10111123689999999853 367899
Q ss_pred ccCCCcceEe-eCCCCcHHHHHHHHHH
Q 002386 727 TSSGRFDFHV-QLPAPAASERKAILEH 752 (929)
Q Consensus 727 ~~~~Rf~~~i-~l~~Pd~~eR~~IL~~ 752 (929)
++ ||+..+ -++.|+.+.=..|..+
T Consensus 631 LS--RFDLIf~l~D~~d~~~D~~lA~h 655 (915)
T PTZ00111 631 FT--RFDLIYLVLDHIDQDTDQLISLS 655 (915)
T ss_pred hh--hhcEEEEecCCCChHHHHHHHHH
Confidence 99 998654 5677776554444433
No 277
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.18 E-value=1.3e-05 Score=93.96 Aligned_cols=132 Identities=19% Similarity=0.240 Sum_probs=76.5
Q ss_pred CCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccccc---c----------Cch-----hhH-HHHH-----
Q 002386 589 LPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLS---L----------EKG-----PII-RQAL----- 644 (929)
Q Consensus 589 ~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~---~----------~~~-----~~~-~~~l----- 644 (929)
.+.+++|+||+|||||++++.++..+..... -..+.+..+. + ..+ ..+ ...+
T Consensus 209 ~G~~llliG~~GsGKTtLak~L~gllpp~~g----~e~le~~~i~s~~g~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~ 284 (506)
T PRK09862 209 GGHNLLLIGPPGTGKTMLASRINGLLPDLSN----EEALESAAILSLVNAESVQKQWRQRPFRSPHHSASLTAMVGGGAI 284 (506)
T ss_pred CCcEEEEECCCCCcHHHHHHHHhccCCCCCC----cEEEecchhhhhhccccccCCcCCCCccCCCccchHHHHhCCCce
Confidence 3467999999999999999999987653211 0111111110 0 000 000 0000
Q ss_pred --HHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcc---c-ccCccCCCcEEEEEecCC
Q 002386 645 --SNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGE---K-RKSSCGIGPIAFVASAQS 718 (929)
Q Consensus 645 --~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~---~-~~~~~~~~~VivIattn~ 718 (929)
-..+..|. ..+|||||++.+- ..+.+.|.+.|+.-.- + ........++.+|+|+|+
T Consensus 285 ~~pG~l~~A~---gGvLfLDEi~e~~---------------~~~~~~L~~~LE~g~v~I~r~g~~~~~pa~f~lIAa~NP 346 (506)
T PRK09862 285 PGPGEISLAH---NGVLFLDELPEFE---------------RRTLDALREPIESGQIHLSRTRAKITYPARFQLVAAMNP 346 (506)
T ss_pred ehhhHhhhcc---CCEEecCCchhCC---------------HHHHHHHHHHHHcCcEEEecCCcceeccCCEEEEEeecC
Confidence 01233332 3599999997763 2666777777754321 1 111112236899999997
Q ss_pred CC---------------------ccccccccCCCcceEeeCCCCcHH
Q 002386 719 LE---------------------KIPQSLTSSGRFDFHVQLPAPAAS 744 (929)
Q Consensus 719 ~~---------------------~L~~~L~~~~Rf~~~i~l~~Pd~~ 744 (929)
.. .++..+++ ||+.++.+++|+.+
T Consensus 347 ~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLD--RfdL~v~v~~~~~~ 391 (506)
T PRK09862 347 SPTGHYQGNHNRCTPEQTLRYLNRLSGPFLD--RFDLSLEIPLPPPG 391 (506)
T ss_pred ccceecCCCCCCcCHHHHHHHHhhCCHhHHh--hccEEEEeCCCCHH
Confidence 53 35667777 99999999988543
No 278
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.15 E-value=9e-06 Score=78.20 Aligned_cols=92 Identities=24% Similarity=0.428 Sum_probs=54.0
Q ss_pred CceEEEECCCCcHHHHHHHHHHHHhccCcc--ceeeEEEEecccccc----------------CchhhHHHHHHHHHHHH
Q 002386 590 PGHILIHGPPGSGKTSLAKAVAKSLEHHKD--LVAHIVFVCCSRLSL----------------EKGPIIRQALSNFISEA 651 (929)
Q Consensus 590 ~~~vLL~GppGtGKTtLaralA~~L~~~~~--~~~~~~~V~~s~L~~----------------~~~~~~~~~l~~~f~~a 651 (929)
.+.++|+|++|+|||++++.+++.+..... ....+++++|..... .........+..+.+..
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 367999999999999999999998843100 016677887754320 00012233333333333
Q ss_pred HhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHH
Q 002386 652 LDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMD 695 (929)
Q Consensus 652 ~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld 695 (929)
..+...+|+|||+|.+.. ..+.+.|..+++
T Consensus 84 ~~~~~~~lviDe~~~l~~--------------~~~l~~l~~l~~ 113 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHLFS--------------DEFLEFLRSLLN 113 (131)
T ss_dssp HHCTEEEEEEETTHHHHT--------------HHHHHHHHHHTC
T ss_pred HhcCCeEEEEeChHhcCC--------------HHHHHHHHHHHh
Confidence 434445999999999730 366666666555
No 279
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=98.14 E-value=9.1e-06 Score=97.03 Aligned_cols=39 Identities=26% Similarity=0.209 Sum_probs=29.7
Q ss_pred CCCCCCceeEEecCCCCcHHHHHHHHHHH---cCCceEEEec
Q 002386 873 APLRLRSNVLLYGPPGCGKTHIVGAAAAA---CSLRFISVKG 911 (929)
Q Consensus 873 ~~lr~~sGiLLyGpPGtGKT~LA~alA~e---~glnfIsVkg 911 (929)
.|+..++-+|++|+||||||++|..++.+ .|.+.+-+..
T Consensus 268 GG~~~g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~ 309 (509)
T PRK09302 268 GGFFRGSIILVSGATGTGKTLLASKFAEAACRRGERCLLFAF 309 (509)
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 35777788999999999999999887743 3666555544
No 280
>PRK08181 transposase; Validated
Probab=98.13 E-value=5.4e-06 Score=90.09 Aligned_cols=74 Identities=24% Similarity=0.403 Sum_probs=48.0
Q ss_pred CceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccccccCchhhH-HHHHHHHHHHHHhcCCcEEEEccccccc
Q 002386 590 PGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPII-RQALSNFISEALDHAPSIVIFDNLDSII 668 (929)
Q Consensus 590 ~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~~~~~~~~-~~~l~~~f~~a~~~~PsVL~LDEiD~L~ 668 (929)
..+++|+||||||||+||.+++.++...+ ..+.+++..++...-.... .......+... ..+.+|+|||++.+.
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g---~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l--~~~dLLIIDDlg~~~ 180 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIENG---WRVLFTRTTDLVQKLQVARRELQLESAIAKL--DKFDLLILDDLAYVT 180 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHcC---CceeeeeHHHHHHHHHHHHhCCcHHHHHHHH--hcCCEEEEecccccc
Confidence 36799999999999999999999875432 4566777666543221110 01122222222 467899999998764
No 281
>PRK12377 putative replication protein; Provisional
Probab=98.13 E-value=1.1e-05 Score=86.57 Aligned_cols=72 Identities=19% Similarity=0.338 Sum_probs=46.6
Q ss_pred ceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccccccCchhhHH--HHHHHHHHHHHhcCCcEEEEcccccc
Q 002386 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIR--QALSNFISEALDHAPSIVIFDNLDSI 667 (929)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~~~~~~~~~--~~l~~~f~~a~~~~PsVL~LDEiD~L 667 (929)
.+++|+||||||||+||.++|+++.... ..+.+++..++...-..... ....+.+... ....+|+|||++..
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g---~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l--~~~dLLiIDDlg~~ 175 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKG---RSVIVVTVPDVMSRLHESYDNGQSGEKFLQEL--CKVDLLVLDEIGIQ 175 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcC---CCeEEEEHHHHHHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCC
Confidence 5799999999999999999999986443 34566766655432111100 0111222222 46779999999664
No 282
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.13 E-value=2.7e-05 Score=85.05 Aligned_cols=125 Identities=14% Similarity=0.187 Sum_probs=82.7
Q ss_pred CceEEEECCCCcHHHHHHHHHHHHhccCc----------cceeeEEEEecccc-ccCchhhHHHHHHHHHHHHHhcCCcE
Q 002386 590 PGHILIHGPPGSGKTSLAKAVAKSLEHHK----------DLVAHIVFVCCSRL-SLEKGPIIRQALSNFISEALDHAPSI 658 (929)
Q Consensus 590 ~~~vLL~GppGtGKTtLaralA~~L~~~~----------~~~~~~~~V~~s~L-~~~~~~~~~~~l~~~f~~a~~~~PsV 658 (929)
+..+||+||.|+||+++|.++|+.+-... .....+..+....- ..-.++.++...+.+..........|
T Consensus 19 ~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~p~e~~~kv 98 (290)
T PRK05917 19 PSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAIKKQIWIHPYESPYKI 98 (290)
T ss_pred CeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHHHHHHhhCccCCCceE
Confidence 45799999999999999999999986421 00111222322111 01234555554444433333344569
Q ss_pred EEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCCCcEEEEEecCCCCccccccccCCCcceEeeC
Q 002386 659 VIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQL 738 (929)
Q Consensus 659 L~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~VivIattn~~~~L~~~L~~~~Rf~~~i~l 738 (929)
++||++|.+.. .-.+.|+..+++... ++++|..|+.++.+.|.++| |.. .+.|
T Consensus 99 ~ii~~ad~mt~---------------~AaNaLLK~LEEPp~---------~~~fiL~~~~~~~ll~TI~S--Rcq-~~~~ 151 (290)
T PRK05917 99 YIIHEADRMTL---------------DAISAFLKVLEDPPQ---------HGVIILTSAKPQRLPPTIRS--RSL-SIHI 151 (290)
T ss_pred EEEechhhcCH---------------HHHHHHHHHhhcCCC---------CeEEEEEeCChhhCcHHHHh--cce-EEEc
Confidence 99999999852 456778888887543 47888888889999999999 766 6677
Q ss_pred CCC
Q 002386 739 PAP 741 (929)
Q Consensus 739 ~~P 741 (929)
+++
T Consensus 152 ~~~ 154 (290)
T PRK05917 152 PME 154 (290)
T ss_pred cch
Confidence 765
No 283
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=98.11 E-value=2.9e-05 Score=85.38 Aligned_cols=163 Identities=19% Similarity=0.308 Sum_probs=86.0
Q ss_pred CCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEecccccc--------------C-----chhhHHHHHHHHHH
Q 002386 589 LPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSL--------------E-----KGPIIRQALSNFIS 649 (929)
Q Consensus 589 ~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~~--------------~-----~~~~~~~~l~~~f~ 649 (929)
..+.+.|+|++|+|||+||+.+++........ ..+++++++.-.. . ....... ....+.
T Consensus 18 ~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f-~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~-~~~~l~ 95 (287)
T PF00931_consen 18 EVRVVAIVGMGGIGKTTLARQVARDLRIKNRF-DGVIWVSLSKNPSLEQLLEQILRQLGEPDSSISDPKDIEE-LQDQLR 95 (287)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHCHHHHCCCC-TEEEEEEEES-SCCHHHHHHHHHHHTCC-STSSCCSSHHH-HHHHHH
T ss_pred CeEEEEEEcCCcCCcceeeeeccccccccccc-cccccccccccccccccccccccccccccccccccccccc-ccccch
Confidence 34669999999999999999999874322211 2344444432110 0 1112222 223333
Q ss_pred HHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCCCcEEEEEecCCCCccccccccC
Q 002386 650 EALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSS 729 (929)
Q Consensus 650 ~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~VivIattn~~~~L~~~L~~~ 729 (929)
+.....+.+|+|||++... .+ ..+...+.... . +..+|.||+... +-..+..
T Consensus 96 ~~L~~~~~LlVlDdv~~~~----------------~~-~~l~~~~~~~~---~------~~kilvTTR~~~-v~~~~~~- 147 (287)
T PF00931_consen 96 ELLKDKRCLLVLDDVWDEE----------------DL-EELREPLPSFS---S------GSKILVTTRDRS-VAGSLGG- 147 (287)
T ss_dssp HHHCCTSEEEEEEEE-SHH----------------HH--------HCHH---S------S-EEEEEESCGG-GGTTHHS-
T ss_pred hhhccccceeeeeeecccc----------------cc-ccccccccccc---c------cccccccccccc-ccccccc-
Confidence 4444568999999987642 11 11222111111 0 245666766533 2222211
Q ss_pred CCcceEeeCCCCcHHHHHHHHHHHHhhcc---cccCHHHHHHHHhhcCCCChhhHHHH
Q 002386 730 GRFDFHVQLPAPAASERKAILEHEIQRRS---LECSDEILLDVASKCDGYDAYDLEIL 784 (929)
Q Consensus 730 ~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~---~~~~d~~l~~LA~~teG~s~~DL~~L 784 (929)
-...++++..+.++-.++|+....... ....++....++..|.|. |-.|..+
T Consensus 148 --~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~gl-PLal~~~ 202 (287)
T PF00931_consen 148 --TDKVIELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGL-PLALKLI 202 (287)
T ss_dssp --CEEEEECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT--HHHHHHH
T ss_pred --cccccccccccccccccccccccccccccccccccccccccccccccc-ccccccc
Confidence 145789999999999999998865433 112234567899998874 4444433
No 284
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.10 E-value=1.9e-05 Score=94.65 Aligned_cols=177 Identities=14% Similarity=0.149 Sum_probs=101.7
Q ss_pred ceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccccccCchhhHHHHHHH--------HHHHHHhcCCcEEEEc
Q 002386 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSN--------FISEALDHAPSIVIFD 662 (929)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~~~~~~~~~~~l~~--------~f~~a~~~~PsVL~LD 662 (929)
+||||.|++|+|||+++++++..|............++...+.|. .+++..+.. ++..| ...|||||
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg--~Dl~~~l~~g~~~~~pGlla~A---h~GvL~lD 100 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGG--LDLAATLRAGRPVAQRGLLAEA---DGGVLVLA 100 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCC--chHHhHhhcCCcCCCCCceeec---cCCEEEec
Confidence 689999999999999999999987632111111112222334432 222222211 11111 23599999
Q ss_pred cccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccc----ccCccCCCcEEEEEecCCC---CccccccccCCCcceE
Q 002386 663 NLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEK----RKSSCGIGPIAFVASAQSL---EKIPQSLTSSGRFDFH 735 (929)
Q Consensus 663 EiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~----~~~~~~~~~VivIattn~~---~~L~~~L~~~~Rf~~~ 735 (929)
|+..+- ..+.+.|++.|+.-.-. ........++++|++.+.. ..|++.++. ||+.+
T Consensus 101 e~n~~~---------------~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLD--Rf~l~ 163 (584)
T PRK13406 101 MAERLE---------------PGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALAD--RLAFH 163 (584)
T ss_pred CcccCC---------------HHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHh--heEEE
Confidence 998774 27888888888753211 1111222368889985432 348888999 99999
Q ss_pred eeCCCCcHHHHH-------HHHHHHHhhcccccCHHHHHHHHhhcC--CC-ChhhHHHHHHHHH
Q 002386 736 VQLPAPAASERK-------AILEHEIQRRSLECSDEILLDVASKCD--GY-DAYDLEILVDRTV 789 (929)
Q Consensus 736 i~l~~Pd~~eR~-------~IL~~~l~~~~~~~~d~~l~~LA~~te--G~-s~~DL~~Lv~~A~ 789 (929)
+.+..|+..+.. +|.+..-.-....+++..+.+++..+. |. +.+....+++-|.
T Consensus 164 v~v~~~~~~~~~~~~~~~~~I~~AR~rl~~v~v~~~~l~~i~~~~~~~gv~S~Ra~i~llraAR 227 (584)
T PRK13406 164 LDLDGLALRDAREIPIDADDIAAARARLPAVGPPPEAIAALCAAAAALGIASLRAPLLALRAAR 227 (584)
T ss_pred EEcCCCChHHhcccCCCHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCCCcCHHHHHHHHHH
Confidence 999988765432 233322111246677877776655442 33 4444444444443
No 285
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.08 E-value=1.6e-05 Score=88.98 Aligned_cols=72 Identities=22% Similarity=0.297 Sum_probs=47.0
Q ss_pred ceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccccccCchhhH---HHHHHHHHHHHHhcCCcEEEEcccccc
Q 002386 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPII---RQALSNFISEALDHAPSIVIFDNLDSI 667 (929)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~~~~~~~~---~~~l~~~f~~a~~~~PsVL~LDEiD~L 667 (929)
.+++|+|++|+|||+||.++|+++.... ..+.+++..++........ .......+.. .....+|+|||+...
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g---~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~--l~~~DLLIIDDlG~e 258 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRG---KSVIYRTADELIEILREIRFNNDKELEEVYDL--LINCDLLIIDDLGTE 258 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCC---CeEEEEEHHHHHHHHHHHHhccchhHHHHHHH--hccCCEEEEeccCCC
Confidence 6799999999999999999999986443 5677887776543221100 0001111222 235579999999765
No 286
>PRK06526 transposase; Provisional
Probab=98.05 E-value=6.3e-06 Score=89.02 Aligned_cols=74 Identities=19% Similarity=0.289 Sum_probs=45.4
Q ss_pred CceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccccccCchhh-HHHHHHHHHHHHHhcCCcEEEEccccccc
Q 002386 590 PGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPI-IRQALSNFISEALDHAPSIVIFDNLDSII 668 (929)
Q Consensus 590 ~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~~~~~~~-~~~~l~~~f~~a~~~~PsVL~LDEiD~L~ 668 (929)
+.+++|+||||||||+||.+++.++...+ ..+.++++.++....... ....+...+... ..+.+|+|||++.+.
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g---~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l--~~~dlLIIDD~g~~~ 172 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAG---HRVLFATAAQWVARLAAAHHAGRLQAELVKL--GRYPLLIVDEVGYIP 172 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCC---CchhhhhHHHHHHHHHHHHhcCcHHHHHHHh--ccCCEEEEcccccCC
Confidence 46799999999999999999999875332 334455554443211100 011112222222 456899999998763
No 287
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.04 E-value=4.4e-06 Score=92.98 Aligned_cols=64 Identities=25% Similarity=0.410 Sum_probs=50.6
Q ss_pred ccCCCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHcCCceEEEeccc
Q 002386 842 GWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPE 913 (929)
Q Consensus 842 ~w~dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~glnfIsVkg~E 913 (929)
.|+++.|.+++++.|...+...... -....+++||||||||||++|+++|++++.++..+.++.
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~--------~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~ 65 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMR--------QEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPA 65 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhc--------CCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccch
Confidence 5889999999999998877522111 122356999999999999999999999999887776653
No 288
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=98.04 E-value=7.6e-05 Score=81.27 Aligned_cols=203 Identities=17% Similarity=0.205 Sum_probs=110.8
Q ss_pred ccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEecccc
Q 002386 553 VSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRL 632 (929)
Q Consensus 553 ~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L 632 (929)
|..+.+....++.+.++-..+-..+ ..+||.|..||||-.+||+....-. ....+|+.++|..+
T Consensus 203 F~~~v~~S~~mk~~v~qA~k~AmlD-------------APLLI~GeTGTGKdLlAkaCH~~S~---R~~~pFlalNCA~l 266 (511)
T COG3283 203 FEQIVAVSPKMKHVVEQAQKLAMLD-------------APLLITGETGTGKDLLAKACHLASP---RHSKPFLALNCASL 266 (511)
T ss_pred hHHHhhccHHHHHHHHHHHHhhccC-------------CCeEEecCCCchHHHHHHHHhhcCc---ccCCCeeEeecCCC
Confidence 4455556666666666554333322 4599999999999999998654322 22378999999876
Q ss_pred ccCchhh-----H--HHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCcc
Q 002386 633 SLEKGPI-----I--RQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSC 705 (929)
Q Consensus 633 ~~~~~~~-----~--~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~ 705 (929)
.....+. . .+--..+|+.|. ...+||||+..+.+ ....+++.+|.+- .+..-.....
T Consensus 267 Pe~~aEsElFG~apg~~gk~GffE~An---gGTVlLDeIgEmSp-----------~lQaKLLRFL~DG--tFRRVGee~E 330 (511)
T COG3283 267 PEDAAESELFGHAPGDEGKKGFFEQAN---GGTVLLDEIGEMSP-----------RLQAKLLRFLNDG--TFRRVGEDHE 330 (511)
T ss_pred chhHhHHHHhcCCCCCCCccchhhhcc---CCeEEeehhhhcCH-----------HHHHHHHHHhcCC--ceeecCCcce
Confidence 5322111 0 011123455543 34899999977642 3333444444331 1111111111
Q ss_pred CCCcEEEEEecCCCCccccccccCCCcc-------eEeeCCCCcHHHHHH----HHHHH----Hhhcc---cccCHHHHH
Q 002386 706 GIGPIAFVASAQSLEKIPQSLTSSGRFD-------FHVQLPAPAASERKA----ILEHE----IQRRS---LECSDEILL 767 (929)
Q Consensus 706 ~~~~VivIattn~~~~L~~~L~~~~Rf~-------~~i~l~~Pd~~eR~~----IL~~~----l~~~~---~~~~d~~l~ 767 (929)
....|.||++|+..- .. +...|+|. .++.+..|...+|.+ +.+.+ ..+.+ ..++++.+.
T Consensus 331 v~vdVRVIcatq~nL--~~-lv~~g~fReDLfyRLNVLtl~~PpLRer~~di~pL~e~Fv~q~s~elg~p~pkl~~~~~~ 407 (511)
T COG3283 331 VHVDVRVICATQVNL--VE-LVQKGKFREDLFYRLNVLTLNLPPLRERPQDIMPLAELFVQQFSDELGVPRPKLAADLLT 407 (511)
T ss_pred EEEEEEEEecccccH--HH-HHhcCchHHHHHHHhheeeecCCccccCcccchHHHHHHHHHHHHHhCCCCCccCHHHHH
Confidence 223689999987522 11 11112221 244444444444432 22222 33333 236777788
Q ss_pred HHHhhcCCCChhhHHHHHHHHHH
Q 002386 768 DVASKCDGYDAYDLEILVDRTVH 790 (929)
Q Consensus 768 ~LA~~teG~s~~DL~~Lv~~A~~ 790 (929)
.+.....-.+.++|.+.+-||+.
T Consensus 408 ~L~~y~WpGNVRqL~N~iyRA~s 430 (511)
T COG3283 408 VLTRYAWPGNVRQLKNAIYRALT 430 (511)
T ss_pred HHHHcCCCccHHHHHHHHHHHHH
Confidence 88887766677888887777754
No 289
>PF14516 AAA_35: AAA-like domain
Probab=98.03 E-value=0.00021 Score=80.44 Aligned_cols=169 Identities=17% Similarity=0.191 Sum_probs=99.0
Q ss_pred CceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccccccCchhhHH----------------------------
Q 002386 590 PGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIR---------------------------- 641 (929)
Q Consensus 590 ~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~~~~~~~~~---------------------------- 641 (929)
+..+.|.||..+|||+++..+++.+.... ..++++++..+.........
T Consensus 31 G~~~~I~apRq~GKTSll~~l~~~l~~~~---~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~ 107 (331)
T PF14516_consen 31 GSYIRIKAPRQMGKTSLLLRLLERLQQQG---YRCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEI 107 (331)
T ss_pred CCEEEEECcccCCHHHHHHHHHHHHHHCC---CEEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhc
Confidence 45689999999999999999998886543 66778888765331111111
Q ss_pred ---HHHHHHHHHH---HhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCCCcEEEEEe
Q 002386 642 ---QALSNFISEA---LDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVAS 715 (929)
Q Consensus 642 ---~~l~~~f~~a---~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~VivIat 715 (929)
..+...|++. ...+|-||+|||+|.++. . ......+...|...... +........+.++.+
T Consensus 108 ~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~---~------~~~~~dF~~~LR~~~~~----~~~~~~~~~L~li~~ 174 (331)
T PF14516_consen 108 GSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFE---Y------PQIADDFFGLLRSWYEQ----RKNNPIWQKLRLILA 174 (331)
T ss_pred CChhhHHHHHHHHHHhcCCCCEEEEEechhhhcc---C------cchHHHHHHHHHHHHHh----cccCcccceEEEEEe
Confidence 0111122221 113688999999999983 1 11122344444443332 111111123444433
Q ss_pred cCCCCcccccc-ccCCCcceEeeCCCCcHHHHHHHHHHHHhhcccccCHHHHHHHHhhcCCCCh
Q 002386 716 AQSLEKIPQSL-TSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDA 778 (929)
Q Consensus 716 tn~~~~L~~~L-~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~d~~l~~LA~~teG~s~ 778 (929)
......+.... .+|..+...++++..+.++...+++.+ +...++..++.+-..|.|...
T Consensus 175 ~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~----~~~~~~~~~~~l~~~tgGhP~ 234 (331)
T PF14516_consen 175 GSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRY----GLEFSQEQLEQLMDWTGGHPY 234 (331)
T ss_pred cCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhh----hccCCHHHHHHHHHHHCCCHH
Confidence 32222222222 344445567899999999988877654 455777779999999999654
No 290
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.03 E-value=4.6e-05 Score=81.08 Aligned_cols=133 Identities=22% Similarity=0.274 Sum_probs=75.3
Q ss_pred ceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccccccCchhhHHHHHHHHHHHHHhcCCcEEEEccccccccC
Q 002386 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISS 670 (929)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~ 670 (929)
.+-.++||+|||||..+|.+|+.++ .+++..+|++..+ ... +.++|.-+. ..++.+++||++.+-
T Consensus 33 ~~~~~~GpagtGKtetik~La~~lG------~~~~vfnc~~~~~--~~~----l~ril~G~~-~~GaW~cfdefnrl~-- 97 (231)
T PF12774_consen 33 LGGALSGPAGTGKTETIKDLARALG------RFVVVFNCSEQMD--YQS----LSRILKGLA-QSGAWLCFDEFNRLS-- 97 (231)
T ss_dssp TEEEEESSTTSSHHHHHHHHHHCTT--------EEEEETTSSS---HHH----HHHHHHHHH-HHT-EEEEETCCCSS--
T ss_pred CCCCCcCCCCCCchhHHHHHHHHhC------CeEEEeccccccc--HHH----HHHHHHHHh-hcCchhhhhhhhhhh--
Confidence 4567899999999999999999999 8899999987553 333 344444333 235789999999883
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHHHhcccccCc-------cCCCcEEEEEecCC----CCccccccccCCCcceEeeCC
Q 002386 671 SSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSS-------CGIGPIAFVASAQS----LEKIPQSLTSSGRFDFHVQLP 739 (929)
Q Consensus 671 ~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~-------~~~~~VivIattn~----~~~L~~~L~~~~Rf~~~i~l~ 739 (929)
......+.+.+....+......... .-.....++.|.|+ ...+|+.|+. .| +.+.+.
T Consensus 98 ---------~~vLS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~--lF-Rpvam~ 165 (231)
T PF12774_consen 98 ---------EEVLSVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKA--LF-RPVAMM 165 (231)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCT--TE-EEEE--
T ss_pred ---------HHHHHHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHH--Hh-heeEEe
Confidence 2333344444444444433221110 00012445566663 3468888876 44 478899
Q ss_pred CCcHHHHHHHH
Q 002386 740 APAASERKAIL 750 (929)
Q Consensus 740 ~Pd~~eR~~IL 750 (929)
.||.....+++
T Consensus 166 ~PD~~~I~ei~ 176 (231)
T PF12774_consen 166 VPDLSLIAEIL 176 (231)
T ss_dssp S--HHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 99887765554
No 291
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=98.03 E-value=0.00028 Score=74.43 Aligned_cols=178 Identities=21% Similarity=0.294 Sum_probs=108.1
Q ss_pred ceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccccc-------------cCc---hh-hHHHHHHHHHHHHHh
Q 002386 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLS-------------LEK---GP-IIRQALSNFISEALD 653 (929)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~-------------~~~---~~-~~~~~l~~~f~~a~~ 653 (929)
+-+.++|+-|+|||++.|++...+..+. ...++++...+. ... .. ..++.-+.+......
T Consensus 52 g~~~vtGevGsGKTv~~Ral~~s~~~d~---~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~ 128 (269)
T COG3267 52 GILAVTGEVGSGKTVLRRALLASLNEDQ---VAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKK 128 (269)
T ss_pred ceEEEEecCCCchhHHHHHHHHhcCCCc---eEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHh
Confidence 3588999999999999998877765332 223555543321 110 01 112222222222222
Q ss_pred -cCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCCCcEEEEEecCCCCccccccccC---
Q 002386 654 -HAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSS--- 729 (929)
Q Consensus 654 -~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~VivIattn~~~~L~~~L~~~--- 729 (929)
..|-++++||++.+.. ...+.+..+...-.+. ...-.+++++-. .|.+.++.+
T Consensus 129 g~r~v~l~vdEah~L~~---------------~~le~Lrll~nl~~~~----~~~l~ivL~Gqp----~L~~~lr~~~l~ 185 (269)
T COG3267 129 GKRPVVLMVDEAHDLND---------------SALEALRLLTNLEEDS----SKLLSIVLIGQP----KLRPRLRLPVLR 185 (269)
T ss_pred CCCCeEEeehhHhhhCh---------------hHHHHHHHHHhhcccc----cCceeeeecCCc----ccchhhchHHHH
Confidence 4568999999998852 2233343333221111 111124555432 344433332
Q ss_pred ---CCcceEeeCCCCcHHHHHHHHHHHHhhcccc---cCHHHHHHHHhhcCCCChhhHHHHHHHHHHHHhhc
Q 002386 730 ---GRFDFHVQLPAPAASERKAILEHEIQRRSLE---CSDEILLDVASKCDGYDAYDLEILVDRTVHAAVGR 795 (929)
Q Consensus 730 ---~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~---~~d~~l~~LA~~teG~s~~DL~~Lv~~A~~~a~~r 795 (929)
.|++..|+++|.+.++-...++..++..+.. ++++.+..+.....| .|+-+..++..|...+...
T Consensus 186 e~~~R~~ir~~l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg-~P~lin~~~~~Al~~a~~a 256 (269)
T COG3267 186 ELEQRIDIRIELPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQG-IPRLINNLATLALDAAYSA 256 (269)
T ss_pred hhhheEEEEEecCCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhcc-chHHHHHHHHHHHHHHHHc
Confidence 3888779999999999999999999875432 567778888888888 5667888888888777654
No 292
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=98.02 E-value=2.8e-05 Score=81.54 Aligned_cols=81 Identities=22% Similarity=0.269 Sum_probs=55.4
Q ss_pred CCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccccccCch-----------------------hhHHH
Q 002386 586 HLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKG-----------------------PIIRQ 642 (929)
Q Consensus 586 ~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~~~~~-----------------------~~~~~ 642 (929)
|++.+.-++|+||||||||+++..++....... ..++|+++..+..... .+...
T Consensus 8 Gi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g---~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 84 (209)
T TIGR02237 8 GVERGTITQIYGPPGSGKTNICMILAVNAARQG---KKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQGV 84 (209)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCC---CeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHH
Confidence 567777899999999999999999988764332 5678888865211111 11122
Q ss_pred HHHHHHHHHHhcCCcEEEEcccccccc
Q 002386 643 ALSNFISEALDHAPSIVIFDNLDSIIS 669 (929)
Q Consensus 643 ~l~~~f~~a~~~~PsVL~LDEiD~L~~ 669 (929)
.+..+...+.++.+.+|+||-+..++.
T Consensus 85 ~~~~l~~~~~~~~~~lvVIDSis~l~~ 111 (209)
T TIGR02237 85 AIQKTSKFIDRDSASLVVVDSFTALYR 111 (209)
T ss_pred HHHHHHHHHhhcCccEEEEeCcHHHhH
Confidence 244444445566899999999998863
No 293
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.01 E-value=8.2e-06 Score=91.87 Aligned_cols=65 Identities=31% Similarity=0.495 Sum_probs=53.0
Q ss_pred CccCCCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHcCCceEEEeccc
Q 002386 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPE 913 (929)
Q Consensus 841 ~~w~dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~glnfIsVkg~E 913 (929)
..|+++.|.++.++.|...+..... +-....++|||||||||||++|+++|++++.++..++++.
T Consensus 22 ~~~~~~vG~~~~~~~l~~~l~~~~~--------~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~ 86 (328)
T PRK00080 22 KSLDEFIGQEKVKENLKIFIEAAKK--------RGEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPA 86 (328)
T ss_pred CCHHHhcCcHHHHHHHHHHHHHHHh--------cCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEeccc
Confidence 4799999999999999887753211 1123467999999999999999999999999998888764
No 294
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=97.99 E-value=4.1e-05 Score=89.68 Aligned_cols=196 Identities=17% Similarity=0.219 Sum_probs=109.3
Q ss_pred cccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccccccC
Q 002386 556 LSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLE 635 (929)
Q Consensus 556 l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~~~ 635 (929)
+.|....+..+.+.+..+.. ....++++|.+|+||+++|+++....... ..+|+.++|..+...
T Consensus 141 lig~s~~~~~~~~~i~~~~~-------------~~~~vli~ge~g~gk~~~a~~ih~~s~~~---~~~~i~~~c~~~~~~ 204 (441)
T PRK10365 141 MVGKSPAMQHLLSEIALVAP-------------SEATVLIHGDSGTGKELVARAIHASSARS---EKPLVTLNCAALNES 204 (441)
T ss_pred eEecCHHHHHHHHHHhhccC-------------CCCeEEEEecCCCCHHHHHHHHHHcCCCC---CCCeeeeeCCCCCHH
Confidence 34455556666555433322 23569999999999999999998754322 268999999876422
Q ss_pred chhhHHHHHHHHHHH---------------HHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccc
Q 002386 636 KGPIIRQALSNFISE---------------ALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEK 700 (929)
Q Consensus 636 ~~~~~~~~l~~~f~~---------------a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~ 700 (929)
.. +. .+|.. .....+.+|||||+|.+.+ .....|.+.++.-.-.
T Consensus 205 ~~---~~---~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ldei~~l~~---------------~~q~~l~~~l~~~~~~ 263 (441)
T PRK10365 205 LL---ES---ELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDISP---------------MMQVRLLRAIQEREVQ 263 (441)
T ss_pred HH---HH---HhcCCCCCCcCCCCcCCCCceeECCCCEEEEeccccCCH---------------HHHHHHHHHHccCcEE
Confidence 21 11 11110 0112367899999999852 2333444444432100
Q ss_pred --ccCccCCCcEEEEEecCCCCccccccccCCCcc-------eEeeCCCCcHHHH----HHHHHHHHhh----cc---cc
Q 002386 701 --RKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFD-------FHVQLPAPAASER----KAILEHEIQR----RS---LE 760 (929)
Q Consensus 701 --~~~~~~~~~VivIattn~~~~L~~~L~~~~Rf~-------~~i~l~~Pd~~eR----~~IL~~~l~~----~~---~~ 760 (929)
.........+.+|++|+..- . .+...++|. ..+.+..|...+| ..+++.++.+ .+ ..
T Consensus 264 ~~~~~~~~~~~~rii~~t~~~~--~-~~~~~~~~~~~l~~~l~~~~i~~ppLreR~~Di~~l~~~~l~~~~~~~~~~~~~ 340 (441)
T PRK10365 264 RVGSNQTISVDVRLIAATHRDL--A-AEVNAGRFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKG 340 (441)
T ss_pred eCCCCceeeeceEEEEeCCCCH--H-HHHHcCCchHHHHHHhccceecCCChhhcchhHHHHHHHHHHHHHHHhCCCCCC
Confidence 00000112467787775421 1 111222332 1234444444444 3344454443 11 34
Q ss_pred cCHHHHHHHHhhcCCCChhhHHHHHHHHHHH
Q 002386 761 CSDEILLDVASKCDGYDAYDLEILVDRTVHA 791 (929)
Q Consensus 761 ~~d~~l~~LA~~teG~s~~DL~~Lv~~A~~~ 791 (929)
++++.+..|.....-.+.++|++++++++..
T Consensus 341 ~~~~a~~~L~~~~wpgN~reL~~~~~~~~~~ 371 (441)
T PRK10365 341 FTPQAMDLLIHYDWPGNIRELENAVERAVVL 371 (441)
T ss_pred cCHHHHHHHHhCCCCCHHHHHHHHHHHHHHh
Confidence 7888888888887666788999999887653
No 295
>PRK09183 transposase/IS protein; Provisional
Probab=97.99 E-value=1.7e-05 Score=86.19 Aligned_cols=75 Identities=23% Similarity=0.340 Sum_probs=48.1
Q ss_pred CCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccccccCchh-hHHHHHHHHHHHHHhcCCcEEEEcccccc
Q 002386 589 LPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGP-IIRQALSNFISEALDHAPSIVIFDNLDSI 667 (929)
Q Consensus 589 ~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~~~~~~-~~~~~l~~~f~~a~~~~PsVL~LDEiD~L 667 (929)
.+.+++|+||+|||||+|+.+++..+...+ ..+.++++.++...... .....+...+... ...+.+++|||++..
T Consensus 101 ~~~~v~l~Gp~GtGKThLa~al~~~a~~~G---~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-~~~~dlLiiDdlg~~ 176 (259)
T PRK09183 101 RNENIVLLGPSGVGKTHLAIALGYEAVRAG---IKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-VMAPRLLIIDEIGYL 176 (259)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHHHcC---CeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-hcCCCEEEEcccccC
Confidence 346799999999999999999988754322 44566676655422111 1111233344433 256789999999765
No 296
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=97.99 E-value=0.00013 Score=78.29 Aligned_cols=194 Identities=19% Similarity=0.220 Sum_probs=107.6
Q ss_pred ccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEE--EEeccccc-
Q 002386 557 SWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIV--FVCCSRLS- 633 (929)
Q Consensus 557 ~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~--~V~~s~L~- 633 (929)
.|+--+++-|...++..+... .-..|--+=|+|++||||..+++.||+.+-..+.. .+++ ++....+.
T Consensus 85 fGQHla~~~Vv~alk~~~~n~--------~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~-S~~V~~fvat~hFP~ 155 (344)
T KOG2170|consen 85 FGQHLAKQLVVNALKSHWANP--------NPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLR-SPFVHHFVATLHFPH 155 (344)
T ss_pred hchHHHHHHHHHHHHHHhcCC--------CCCCCeEEEecCCCCCchhHHHHHHHHHHHhcccc-chhHHHhhhhccCCC
Confidence 345566777777765333211 01122335589999999999999999988544321 1111 22222222
Q ss_pred cCchhhHHHHHHH-HHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCCCcEEE
Q 002386 634 LEKGPIIRQALSN-FISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAF 712 (929)
Q Consensus 634 ~~~~~~~~~~l~~-~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~Viv 712 (929)
......-+..++. +...+...+.+++++||+|.+-+ .+.+.+...+|.+..... .....-++
T Consensus 156 ~~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKmp~---------------gLld~lkpfLdyyp~v~g--v~frkaIF 218 (344)
T KOG2170|consen 156 ASKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKLPP---------------GLLDVLKPFLDYYPQVSG--VDFRKAIF 218 (344)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCCceEEechhhhcCH---------------hHHHHHhhhhcccccccc--ccccceEE
Confidence 2223333333333 33344556788999999999863 677777777774332110 11113445
Q ss_pred EEecCCCCc-----------------------cc-----------------cccccCCCcceEeeCCCCcHHHHHHHHHH
Q 002386 713 VASAQSLEK-----------------------IP-----------------QSLTSSGRFDFHVQLPAPAASERKAILEH 752 (929)
Q Consensus 713 Iattn~~~~-----------------------L~-----------------~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~ 752 (929)
|.-+|.-.+ +. ..+.+..+.+..|-|.|.+...-...++.
T Consensus 219 IfLSN~gg~eI~~~aL~~~~~g~~re~~~l~~~E~~L~~~~~n~~~~Gl~~S~li~~~lid~fIPFLPLek~hV~~C~r~ 298 (344)
T KOG2170|consen 219 IFLSNAGGSEIARIALENARNGKPREQLRLKSFEPALMQSAFNEKAGGLVHSRLISNNLIDHFIPFLPLEKRHVRSCIRA 298 (344)
T ss_pred EEEcCCcchHHHHHHHHHHHcCCCcccchhhhhhHHHHHhhhccccccccccccchhhHHhhccCcCcccHHHHHHHHHH
Confidence 554443221 11 11112235556667777777777777777
Q ss_pred HHhhcccccCHHHHHHHHhhcCCC
Q 002386 753 EIQRRSLECSDEILLDVASKCDGY 776 (929)
Q Consensus 753 ~l~~~~~~~~d~~l~~LA~~teG~ 776 (929)
.+.++++..+.+.+++++....-|
T Consensus 299 el~~rg~~~d~~~~erva~~l~ff 322 (344)
T KOG2170|consen 299 ELRKRGLAPDQDFVERVANSLSFF 322 (344)
T ss_pred HHHhcccccchHHHHHHHHhhccc
Confidence 777777666666677766655443
No 297
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.98 E-value=4e-05 Score=82.13 Aligned_cols=72 Identities=14% Similarity=0.339 Sum_probs=47.7
Q ss_pred ceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccccccCchhhH---HHHHHHHHHHHHhcCCcEEEEcccccc
Q 002386 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPII---RQALSNFISEALDHAPSIVIFDNLDSI 667 (929)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~~~~~~~~---~~~l~~~f~~a~~~~PsVL~LDEiD~L 667 (929)
.+++|+|++|||||+|+.++|.++.... ..+.+++..++........ .....+++... ...++|+|||++..
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g---~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l--~~~dlLvIDDig~~ 174 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRG---KSVLIITVADIMSAMKDTFSNSETSEEQLLNDL--SNVDLLVIDEIGVQ 174 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcC---CeEEEEEHHHHHHHHHHHHhhccccHHHHHHHh--ccCCEEEEeCCCCC
Confidence 4799999999999999999999986433 4566777666543211111 01122333332 35789999999765
No 298
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.98 E-value=1.2e-05 Score=82.31 Aligned_cols=72 Identities=25% Similarity=0.411 Sum_probs=44.2
Q ss_pred CceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccccccCchhhH-HHHHHHHHHHHHhcCCcEEEEccccc
Q 002386 590 PGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPII-RQALSNFISEALDHAPSIVIFDNLDS 666 (929)
Q Consensus 590 ~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~~~~~~~~-~~~l~~~f~~a~~~~PsVL~LDEiD~ 666 (929)
+.+++|+|++|+|||+||.++++++-..+ ..+.+++..+|...-.... .....+.+... ....+|+|||+..
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g---~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l--~~~dlLilDDlG~ 119 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKG---YSVLFITASDLLDELKQSRSDGSYEELLKRL--KRVDLLILDDLGY 119 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT-----EEEEEHHHHHHHHHCCHCCTTHCHHHHHH--HTSSCEEEETCTS
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCC---cceeEeecCceeccccccccccchhhhcCcc--ccccEecccccce
Confidence 46899999999999999999999876533 5577777766542111000 00112222222 3567999999954
No 299
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.97 E-value=0.00044 Score=79.52 Aligned_cols=171 Identities=14% Similarity=0.201 Sum_probs=90.7
Q ss_pred ceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEe-c------cc------cccCchhhHHHHHHHHHHHHHh----
Q 002386 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVC-C------SR------LSLEKGPIIRQALSNFISEALD---- 653 (929)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~-~------s~------L~~~~~~~~~~~l~~~f~~a~~---- 653 (929)
+-+||+||+||||||.++.++++++. .++.-. . .. ..+.....--..++.....+..
T Consensus 111 ~iLLltGPsGcGKSTtvkvLskelg~------~~~Ew~Npi~~~~~~~~h~~t~~~~~~~~s~L~~fesFler~~kyg~l 184 (634)
T KOG1970|consen 111 RILLLTGPSGCGKSTTVKVLSKELGY------QLIEWSNPINLKEPENLHNETSFLMFPYQSQLAVFESFLLRATKYGSL 184 (634)
T ss_pred eEEEEeCCCCCCchhHHHHHHHhhCc------eeeeecCCccccccccccccchhcccchhhHHHHHHHHHHHHHhhchh
Confidence 45899999999999999999999983 222221 1 11 1121222222233334334422
Q ss_pred --------cCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCCCcEEEEEe-cCCCCcccc
Q 002386 654 --------HAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVAS-AQSLEKIPQ 724 (929)
Q Consensus 654 --------~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~VivIat-tn~~~~L~~ 724 (929)
..+.+|++||+=..+. . .. .+.|...+..+.... ..+++++.| ++..+..++
T Consensus 185 ~~~g~~~~~~~~liLveDLPn~~~---------~-d~----~~~f~evL~~y~s~g-----~~PlIf~iTd~~~~g~nnq 245 (634)
T KOG1970|consen 185 QMSGDDLRTDKKLILVEDLPNQFY---------R-DD----SETFREVLRLYVSIG-----RCPLIFIITDSLSNGNNNQ 245 (634)
T ss_pred hhcccccccCceEEEeeccchhhh---------h-hh----HHHHHHHHHHHHhcC-----CCcEEEEEeccccCCCcch
Confidence 2456899999966542 0 01 122333333332211 123444444 333333332
Q ss_pred cc------ccCCCcceEeeCCCCcHHHHHHHHHHHHhhcccccC------HHHHHHHHhhcCCCChhhHHHHHHHHHHH
Q 002386 725 SL------TSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECS------DEILLDVASKCDGYDAYDLEILVDRTVHA 791 (929)
Q Consensus 725 ~L------~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~------d~~l~~LA~~teG~s~~DL~~Lv~~A~~~ 791 (929)
.. .-..|.. +|.|.|-...-..+.|+..+........ ...++.++..+.| ||+.++...-..
T Consensus 246 ~rlf~~d~q~~~ri~-~IsFNPIa~T~MKK~L~ric~~e~~~~s~~k~~~~~~v~~i~~~s~G----DIRsAInsLQls 319 (634)
T KOG1970|consen 246 DRLFPKDIQEEPRIS-NISFNPIAPTIMKKFLKRICRIEANKKSGIKVPDTAEVELICQGSGG----DIRSAINSLQLS 319 (634)
T ss_pred hhhchhhhhhccCcc-eEeecCCcHHHHHHHHHHHHHHhcccccCCcCchhHHHHHHHHhcCc----cHHHHHhHhhhh
Confidence 22 2223444 7889888888888888877765433333 3345666665555 777766555443
No 300
>PRK06921 hypothetical protein; Provisional
Probab=97.97 E-value=1.6e-05 Score=86.52 Aligned_cols=72 Identities=22% Similarity=0.260 Sum_probs=45.7
Q ss_pred CceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccccccCchhhHHHHHHHHHHHHHhcCCcEEEEccccc
Q 002386 590 PGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDS 666 (929)
Q Consensus 590 ~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~ 666 (929)
..+++|+|++|+|||+|+.++|+++..... ..++|+...++...-.... ..+...+.. .....+|+|||++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g--~~v~y~~~~~l~~~l~~~~-~~~~~~~~~--~~~~dlLiIDDl~~ 188 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKG--VPVLYFPFVEGFGDLKDDF-DLLEAKLNR--MKKVEVLFIDDLFK 188 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcC--ceEEEEEHHHHHHHHHHHH-HHHHHHHHH--hcCCCEEEEecccc
Confidence 467999999999999999999999864312 4566776655432211111 111122222 24567999999954
No 301
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.95 E-value=5.4e-06 Score=90.26 Aligned_cols=47 Identities=28% Similarity=0.448 Sum_probs=39.9
Q ss_pred CceeEEecCCCCcHHHHHHHHHHHcCCceEEEec------ccccccccChhhH
Q 002386 878 RSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKG------PELLNKYIGASEQ 924 (929)
Q Consensus 878 ~sGiLLyGpPGtGKT~LA~alA~e~glnfIsVkg------~ELl~kyIG~SEq 924 (929)
+..+||+||||||||++|+++|+..|.+|+.+.+ .++++.|.|...+
T Consensus 21 g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~ 73 (262)
T TIGR02640 21 GYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRK 73 (262)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchh
Confidence 4679999999999999999999999999999965 4777777765544
No 302
>PRK04195 replication factor C large subunit; Provisional
Probab=97.95 E-value=9.3e-06 Score=96.16 Aligned_cols=66 Identities=29% Similarity=0.427 Sum_probs=54.5
Q ss_pred CccCCCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHcCCceEEEeccccc
Q 002386 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELL 915 (929)
Q Consensus 841 ~~w~dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~glnfIsVkg~ELl 915 (929)
..++++.|.+.+++.|++.++.-. + -+++.++|||||||||||++|+++|+++|.+++.++.++.-
T Consensus 11 ~~l~dlvg~~~~~~~l~~~l~~~~-------~--g~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r 76 (482)
T PRK04195 11 KTLSDVVGNEKAKEQLREWIESWL-------K--GKPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQR 76 (482)
T ss_pred CCHHHhcCCHHHHHHHHHHHHHHh-------c--CCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccccc
Confidence 478899999999999988775211 1 12367899999999999999999999999999999987643
No 303
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.91 E-value=9.4e-06 Score=86.97 Aligned_cols=51 Identities=31% Similarity=0.538 Sum_probs=43.6
Q ss_pred CccCCCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHcCC
Q 002386 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSL 904 (929)
Q Consensus 841 ~~w~dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~gl 904 (929)
-.++++.|.+.+.+.|+.++. . +...++|||||||||||+.|.|+|+++..
T Consensus 33 kt~de~~gQe~vV~~L~~a~~------------~-~~lp~~LFyGPpGTGKTStalafar~L~~ 83 (346)
T KOG0989|consen 33 KTFDELAGQEHVVQVLKNALL------------R-RILPHYLFYGPPGTGKTSTALAFARALNC 83 (346)
T ss_pred CcHHhhcchHHHHHHHHHHHh------------h-cCCceEEeeCCCCCcHhHHHHHHHHHhcC
Confidence 468899999999999999875 1 34457999999999999999999998754
No 304
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=97.90 E-value=9e-06 Score=90.16 Aligned_cols=57 Identities=25% Similarity=0.488 Sum_probs=42.3
Q ss_pred ccCCCCCchhhH---HHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHcCCceEEEec
Q 002386 842 GWDDVGGLTDIQ---NAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKG 911 (929)
Q Consensus 842 ~w~dIgGL~~vk---~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~glnfIsVkg 911 (929)
.++++.|++... ..|..+++- ..-.+++||||||||||+||++||+..+.+|..++.
T Consensus 22 ~lde~vGQ~HLlg~~~~lrr~v~~-------------~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sA 81 (436)
T COG2256 22 SLDEVVGQEHLLGEGKPLRRAVEA-------------GHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSA 81 (436)
T ss_pred CHHHhcChHhhhCCCchHHHHHhc-------------CCCceeEEECCCCCCHHHHHHHHHHhhCCceEEecc
Confidence 566666665442 344444431 123569999999999999999999999999999865
No 305
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.89 E-value=1.6e-05 Score=93.19 Aligned_cols=52 Identities=19% Similarity=0.351 Sum_probs=43.9
Q ss_pred CccCCCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHcCC
Q 002386 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSL 904 (929)
Q Consensus 841 ~~w~dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~gl 904 (929)
..|+++.|.+.+++.|...+... +.+.++|||||||||||++|+++|+.++.
T Consensus 11 ~~~~divGq~~i~~~L~~~i~~~------------~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~ 62 (472)
T PRK14962 11 KTFSEVVGQDHVKKLIINALKKN------------SISHAYIFAGPRGTGKTTVARILAKSLNC 62 (472)
T ss_pred CCHHHccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 57999999999998888876522 35667999999999999999999998754
No 306
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.87 E-value=4.5e-05 Score=82.50 Aligned_cols=75 Identities=21% Similarity=0.358 Sum_probs=48.7
Q ss_pred CCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccccccCchhhHHH-HHHHHHHHHHhcCCcEEEEcccccc
Q 002386 589 LPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQ-ALSNFISEALDHAPSIVIFDNLDSI 667 (929)
Q Consensus 589 ~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~~~~~~~~~~-~l~~~f~~a~~~~PsVL~LDEiD~L 667 (929)
.+.+++|+||||+|||+||-|++.++. ..+ ..+.++...++...--..... .....+... -....+|||||+...
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~-~~g--~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~-l~~~dlLIiDDlG~~ 179 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELL-KAG--ISVLFITAPDLLSKLKAAFDEGRLEEKLLRE-LKKVDLLIIDDIGYE 179 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHH-HcC--CeEEEEEHHHHHHHHHHHHhcCchHHHHHHH-hhcCCEEEEecccCc
Confidence 457899999999999999999999997 333 567777777665332221111 111111110 134569999999664
No 307
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.86 E-value=4.3e-05 Score=84.86 Aligned_cols=74 Identities=16% Similarity=0.239 Sum_probs=46.9
Q ss_pred CCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccccccCchhhH-HHHHHHHHHHHHhcCCcEEEEcccccc
Q 002386 589 LPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPII-RQALSNFISEALDHAPSIVIFDNLDSI 667 (929)
Q Consensus 589 ~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~~~~~~~~-~~~l~~~f~~a~~~~PsVL~LDEiD~L 667 (929)
...+++|+|++|||||+|+.++|.++...+ ..+.++...++...-.... ...+.+.+... ....+|+|||+..-
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g---~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l--~~~dlLiIDDiG~e 229 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKG---VSSTLLHFPEFIRELKNSISDGSVKEKIDAV--KEAPVLMLDDIGAE 229 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcC---CCEEEEEHHHHHHHHHHHHhcCcHHHHHHHh--cCCCEEEEecCCCc
Confidence 346899999999999999999999996433 4455566555432211111 01122333332 45679999999653
No 308
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=97.82 E-value=2e-05 Score=90.31 Aligned_cols=59 Identities=27% Similarity=0.369 Sum_probs=50.0
Q ss_pred CccCCCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHc
Q 002386 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC 902 (929)
Q Consensus 841 ~~w~dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~ 902 (929)
..|++|.|++.+++.|+..+..+..++.. .+.+++.++||+||||||||++|+++|+..
T Consensus 2 ~~f~~IiGq~~~~~~L~~~i~~~~~~~~~---~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l 60 (394)
T PRK07940 2 SVWDDLVGQEAVVAELRAAARAARADVAA---AGSGMTHAWLFTGPPGSGRSVAARAFAAAL 60 (394)
T ss_pred ChhhhccChHHHHHHHHHHHHhccccccc---cCCCCCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 36999999999999999999987665433 344567889999999999999999999864
No 309
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=97.82 E-value=1.1e-05 Score=89.13 Aligned_cols=46 Identities=20% Similarity=0.301 Sum_probs=40.5
Q ss_pred CCceeEEecCCCCcHHHHHHHHHHHcCCceEEEeccccccc--ccChh
Q 002386 877 LRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNK--YIGAS 922 (929)
Q Consensus 877 ~~sGiLLyGpPGtGKT~LA~alA~e~glnfIsVkg~ELl~k--yIG~S 922 (929)
.+.++||.||||||||++|+.+|+.+|++|+.|++.+-++. ++|..
T Consensus 63 ~~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~ 110 (327)
T TIGR01650 63 YDRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKD 110 (327)
T ss_pred cCCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCc
Confidence 35689999999999999999999999999999998877776 67754
No 310
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.81 E-value=6.7e-05 Score=74.41 Aligned_cols=74 Identities=28% Similarity=0.420 Sum_probs=47.0
Q ss_pred EEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccccccC------------------------chhhHHHHHHHHH
Q 002386 593 ILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLE------------------------KGPIIRQALSNFI 648 (929)
Q Consensus 593 vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~~~------------------------~~~~~~~~l~~~f 648 (929)
++|+|+||+|||++++.++..+.... ..+.++++...... .............
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~---~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKG---GKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAE 78 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcC---CEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHH
Confidence 78999999999999999999885432 34555554322110 0111111122234
Q ss_pred HHHHhcCCcEEEEcccccccc
Q 002386 649 SEALDHAPSIVIFDNLDSIIS 669 (929)
Q Consensus 649 ~~a~~~~PsVL~LDEiD~L~~ 669 (929)
..+....|.+++|||+..+..
T Consensus 79 ~~~~~~~~~~lviDe~~~~~~ 99 (165)
T cd01120 79 RLRERGGDDLIILDELTRLVR 99 (165)
T ss_pred HHHhCCCCEEEEEEcHHHHHH
Confidence 445557889999999998864
No 311
>PRK06851 hypothetical protein; Provisional
Probab=97.80 E-value=0.00026 Score=79.97 Aligned_cols=26 Identities=27% Similarity=0.618 Sum_probs=23.5
Q ss_pred ceEEEECCCCcHHHHHHHHHHHHhcc
Q 002386 591 GHILIHGPPGSGKTSLAKAVAKSLEH 616 (929)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~L~~ 616 (929)
+-++|.|+||+||||+++.+++.+..
T Consensus 31 ~~~il~G~pGtGKStl~~~i~~~~~~ 56 (367)
T PRK06851 31 RIFILKGGPGTGKSTLMKKIGEEFLE 56 (367)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 45899999999999999999999864
No 312
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.80 E-value=2e-05 Score=76.92 Aligned_cols=34 Identities=38% Similarity=0.548 Sum_probs=30.9
Q ss_pred eeEEecCCCCcHHHHHHHHHHHcCCceEEEeccc
Q 002386 880 NVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPE 913 (929)
Q Consensus 880 GiLLyGpPGtGKT~LA~alA~e~glnfIsVkg~E 913 (929)
++||+||||||||++|+.+|+.++.+++.+.++.
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~ 34 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSS 34 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEecc
Confidence 5899999999999999999999999999998764
No 313
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=97.79 E-value=0.00068 Score=74.94 Aligned_cols=151 Identities=13% Similarity=0.129 Sum_probs=94.8
Q ss_pred ceEEEECCCCcHHHHHHHHHHHHhccCc-------cceeeEEEEeccccccCchhhHHHHHHHHHHHHHh-cCCcEEEEc
Q 002386 591 GHILIHGPPGSGKTSLAKAVAKSLEHHK-------DLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALD-HAPSIVIFD 662 (929)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~L~~~~-------~~~~~~~~V~~s~L~~~~~~~~~~~l~~~f~~a~~-~~PsVL~LD 662 (929)
..+||+|+.|.||+++|+.+++.+-... .....+..++... ..-...+++...+.+-..+.. ....|++||
T Consensus 19 haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g-~~i~vd~Ir~l~~~~~~~~~~~~~~KvvII~ 97 (299)
T PRK07132 19 HSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFD-KDLSKSEFLSAINKLYFSSFVQSQKKILIIK 97 (299)
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCC-CcCCHHHHHHHHHHhccCCcccCCceEEEEe
Confidence 5589999999999999999999983211 1111233343111 112234445444443222212 355699999
Q ss_pred cccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCCCcEEEEEecCCCCccccccccCCCcceEeeCCCCc
Q 002386 663 NLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPA 742 (929)
Q Consensus 663 EiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~VivIattn~~~~L~~~L~~~~Rf~~~i~l~~Pd 742 (929)
++|.+. ..-.+.|+..+++... .+++|.+++.++.+-+.+++ |.. .++|.+++
T Consensus 98 ~~e~m~---------------~~a~NaLLK~LEEPp~---------~t~~il~~~~~~kll~TI~S--Rc~-~~~f~~l~ 150 (299)
T PRK07132 98 NIEKTS---------------NSLLNALLKTIEEPPK---------DTYFLLTTKNINKVLPTIVS--RCQ-VFNVKEPD 150 (299)
T ss_pred cccccC---------------HHHHHHHHHHhhCCCC---------CeEEEEEeCChHhChHHHHh--CeE-EEECCCCC
Confidence 998874 2445677777777543 35666666677888888888 655 78999999
Q ss_pred HHHHHHHHHHHHhhcccccCHHHHHHHHhhcCC
Q 002386 743 ASERKAILEHEIQRRSLECSDEILLDVASKCDG 775 (929)
Q Consensus 743 ~~eR~~IL~~~l~~~~~~~~d~~l~~LA~~teG 775 (929)
.++..+.|.. .+ .+++....+|..+.|
T Consensus 151 ~~~l~~~l~~----~~--~~~~~a~~~a~~~~~ 177 (299)
T PRK07132 151 QQKILAKLLS----KN--KEKEYNWFYAYIFSN 177 (299)
T ss_pred HHHHHHHHHH----cC--CChhHHHHHHHHcCC
Confidence 9888776653 22 444444555555554
No 314
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=97.78 E-value=0.00017 Score=87.10 Aligned_cols=218 Identities=17% Similarity=0.169 Sum_probs=0.0
Q ss_pred ccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccce-----------
Q 002386 553 VSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLV----------- 621 (929)
Q Consensus 553 ~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~----------- 621 (929)
++.+.|++..++.+...+.. +++++|+||||||||++++++++.+.......
T Consensus 30 ~~~vigq~~a~~~L~~~~~~-----------------~~~~l~~G~~G~GKttla~~l~~~l~~~~~~~~~~~~np~~~~ 92 (637)
T PRK13765 30 IDQVIGQEHAVEVIKKAAKQ-----------------RRHVMMIGSPGTGKSMLAKAMAELLPKEELQDILVYPNPEDPN 92 (637)
T ss_pred HHHcCChHHHHHHHHHHHHh-----------------CCeEEEECCCCCcHHHHHHHHHHHcChHhHHHheEeeCCCcch
Q ss_pred --------------------------------------------------------------------------------
Q 002386 622 -------------------------------------------------------------------------------- 621 (929)
Q Consensus 622 -------------------------------------------------------------------------------- 621 (929)
T Consensus 93 ~~~~~~v~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nl 172 (637)
T PRK13765 93 NPKIRTVPAGKGKQIVEAHKEEARKRNQMRNMLMMIIIAGIIGYAFIYAGQILWGIIAAGLIYMALRYFRPKEDAMVPKL 172 (637)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcCceEEEEE
Q ss_pred ---------eeEEEEeccccccCchhhHH-------HHHHHHHHHHHhc-----CCcEEEEccccccccCCCCCCCCCCc
Q 002386 622 ---------AHIVFVCCSRLSLEKGPIIR-------QALSNFISEALDH-----APSIVIFDNLDSIISSSSDPEGSQPS 680 (929)
Q Consensus 622 ---------~~~~~V~~s~L~~~~~~~~~-------~~l~~~f~~a~~~-----~PsVL~LDEiD~L~~~~~~~~~~~~~ 680 (929)
.+|++.+|.. .+.-+|.++ ..+...+.....+ ...+|||||++.|-+
T Consensus 173 lv~ns~~~~aPvi~~~~p~-~~~LfG~i~~~~~~~Gg~~t~~~~~i~~G~L~kAnGGtL~LDei~~L~~----------- 240 (637)
T PRK13765 173 LVNNADKKTAPFVDATGAH-AGALLGDVRHDPFQSGGLETPAHDRVEAGAIHKAHKGVLFIDEINTLDL----------- 240 (637)
T ss_pred EEeCCCCCCCCEEEeCCCC-HHHcCCccccccccccccccCccccCCCCceeECCCcEEEEeChHhCCH-----------
Q ss_pred hhHHHHHHHHHHHHHHhc----------------ccccCccCCCcEEEEEecCCC--CccccccccCCCcc---eEeeCC
Q 002386 681 TSVIALTKFLVDIMDEYG----------------EKRKSSCGIGPIAFVASAQSL--EKIPQSLTSSGRFD---FHVQLP 739 (929)
Q Consensus 681 ~~~~~l~~~L~~~ld~~~----------------~~~~~~~~~~~VivIattn~~--~~L~~~L~~~~Rf~---~~i~l~ 739 (929)
.....|.+.|..-. ...-.. .+.+|+++++. ..+++.|.. ||. ..++|.
T Consensus 241 ----~~q~~Llr~L~~~~i~i~g~~e~~~~~~~~~~~ip~----dvrvI~a~~~~ll~~~dpdL~~--rfk~~~v~v~f~ 310 (637)
T PRK13765 241 ----ESQQSLLTAMQEKKFPITGQSERSSGAMVRTEPVPC----DFIMVAAGNLDALENMHPALRS--RIKGYGYEVYMR 310 (637)
T ss_pred ----HHHHHHHHHHHhCCEEecccccccccccCCCcceee----eeEEEEecCcCHHHhhhHHHHH--HhccCeEEEEcc
Q ss_pred ---CCcHHHHHHHHHHHHhhccc-----ccCHHHHHHHHhhc------CC---CChhhHHHHHHHHHHHHhhccccCCcc
Q 002386 740 ---APAASERKAILEHEIQRRSL-----ECSDEILLDVASKC------DG---YDAYDLEILVDRTVHAAVGRYLHSDSS 802 (929)
Q Consensus 740 ---~Pd~~eR~~IL~~~l~~~~~-----~~~d~~l~~LA~~t------eG---~s~~DL~~Lv~~A~~~a~~r~~~~~~~ 802 (929)
+-+.+.+..+++...+.... .++.+.+..+.+.. .+ ...++|..+++.|...|..+
T Consensus 311 ~~~~d~~e~~~~~~~~iaqe~~~~G~l~~f~~eAVa~LI~~~~R~ag~r~~lsl~~~~l~~l~r~a~~~a~~~------- 383 (637)
T PRK13765 311 DTMEDTPENRRKLVRFVAQEVKRDGKIPHFDRDAVEEIIREAKRRAGRKGHLTLKLRDLGGLVRVAGDIARSE------- 383 (637)
T ss_pred cccCCCHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHhCCccccccCHHHHHHHHHHHHHHHHhh-------
Q ss_pred cccccccccccccccccc
Q 002386 803 FEKHIKPTLVRDDFSQAM 820 (929)
Q Consensus 803 ~~~~~~~~lt~edf~~al 820 (929)
+...++.+|+.+|.
T Consensus 384 ----~~~~i~~~~v~~a~ 397 (637)
T PRK13765 384 ----GAELTTAEHVLEAK 397 (637)
T ss_pred ----ccceecHHHHHHHH
No 315
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=97.75 E-value=2.1e-05 Score=74.85 Aligned_cols=36 Identities=44% Similarity=0.666 Sum_probs=25.2
Q ss_pred eeEEecCCCCcHHHHHHHHHHHcCCceEEEec-cccc
Q 002386 880 NVLLYGPPGCGKTHIVGAAAAACSLRFISVKG-PELL 915 (929)
Q Consensus 880 GiLLyGpPGtGKT~LA~alA~e~glnfIsVkg-~ELl 915 (929)
++||.|+||+|||++|+++|+..|+.|..|.+ |+++
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdll 37 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLL 37 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCC
Confidence 58999999999999999999999999999977 4543
No 316
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.74 E-value=0.00028 Score=92.36 Aligned_cols=177 Identities=16% Similarity=0.202 Sum_probs=94.1
Q ss_pred ccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEecc--
Q 002386 553 VSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCS-- 630 (929)
Q Consensus 553 ~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s-- 630 (929)
+.++.|++..++++...+ ... ....+-+-|+|++|+||||||++++..+...... .++++..
T Consensus 183 ~~~~vG~~~~l~~l~~lL----~l~---------~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g---~vfv~~~~v 246 (1153)
T PLN03210 183 FEDFVGIEDHIAKMSSLL----HLE---------SEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQS---SVFIDRAFI 246 (1153)
T ss_pred cccccchHHHHHHHHHHH----ccc---------cCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCe---EEEeecccc
Confidence 345778888777776533 211 2234568899999999999999999887543221 1122110
Q ss_pred ----ccccC--------chhhHHHHHHH-------------HHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHH
Q 002386 631 ----RLSLE--------KGPIIRQALSN-------------FISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIA 685 (929)
Q Consensus 631 ----~L~~~--------~~~~~~~~l~~-------------~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~ 685 (929)
..... .....++.+.+ .+.+....++.+|+|||++.. .
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~~-----------------~ 309 (1153)
T PLN03210 247 SKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQ-----------------D 309 (1153)
T ss_pred ccchhhcccccccccchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCCH-----------------H
Confidence 00000 00000111111 122223356779999998643 2
Q ss_pred HHHHHHHHHHHhcccccCccCCCcEEEEEecCCCCccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhhcccccCH--
Q 002386 686 LTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSD-- 763 (929)
Q Consensus 686 l~~~L~~~ld~~~~~~~~~~~~~~VivIattn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~d-- 763 (929)
..+.+....+.+ +. +-.||.||...+.+.. ...+..++++.|+.++..+++..++-+.... .+
T Consensus 310 ~l~~L~~~~~~~--------~~-GsrIIiTTrd~~vl~~-----~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~-~~~~ 374 (1153)
T PLN03210 310 VLDALAGQTQWF--------GS-GSRIIVITKDKHFLRA-----HGIDHIYEVCLPSNELALEMFCRSAFKKNSP-PDGF 374 (1153)
T ss_pred HHHHHHhhCccC--------CC-CcEEEEEeCcHHHHHh-----cCCCeEEEecCCCHHHHHHHHHHHhcCCCCC-cHHH
Confidence 233333222211 11 2345556665443221 1355678999999999999988776432221 22
Q ss_pred -HHHHHHHhhcCCCC
Q 002386 764 -EILLDVASKCDGYD 777 (929)
Q Consensus 764 -~~l~~LA~~teG~s 777 (929)
+....++..+.|..
T Consensus 375 ~~l~~~iv~~c~GLP 389 (1153)
T PLN03210 375 MELASEVALRAGNLP 389 (1153)
T ss_pred HHHHHHHHHHhCCCc
Confidence 22445777777755
No 317
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=97.74 E-value=0.00012 Score=86.00 Aligned_cols=196 Identities=19% Similarity=0.296 Sum_probs=117.7
Q ss_pred ccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccccccCc
Q 002386 557 SWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEK 636 (929)
Q Consensus 557 ~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~~~~ 636 (929)
.+.+...+...+++..+.... -.+|++|.+||||-.++|++.+... ...+|+.++|..+....
T Consensus 316 ~~~d~s~a~l~rk~~rv~~~~-------------~pvll~GEtGtGKe~laraiH~~s~----~~gpfvAvNCaAip~~l 378 (606)
T COG3284 316 PLLDPSRATLLRKAERVAATD-------------LPVLLQGETGTGKEVLARAIHQNSE----AAGPFVAVNCAAIPEAL 378 (606)
T ss_pred cccCHHHHHHHHHHHHHhhcC-------------CCeEecCCcchhHHHHHHHHHhccc----ccCCeEEEEeccchHHh
Confidence 356667777777665444322 4599999999999999999987654 23789999997654221
Q ss_pred h-----hhHHHHH--------HHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccc-
Q 002386 637 G-----PIIRQAL--------SNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRK- 702 (929)
Q Consensus 637 ~-----~~~~~~l--------~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~- 702 (929)
. +-....+ ...++.| ....||||||..+. -.+...|++.+.+-.-..-
T Consensus 379 iesELFGy~~GafTga~~kG~~g~~~~A---~gGtlFldeIgd~p---------------~~~Qs~LLrVl~e~~v~p~g 440 (606)
T COG3284 379 IESELFGYVAGAFTGARRKGYKGKLEQA---DGGTLFLDEIGDMP---------------LALQSRLLRVLQEGVVTPLG 440 (606)
T ss_pred hhHHHhccCccccccchhccccccceec---CCCccHHHHhhhch---------------HHHHHHHHHHHhhCceeccC
Confidence 1 1111111 1122222 23489999997763 1455556666654321100
Q ss_pred CccCCCcEEEEEecCCCCccccccccCCCcc---------eEeeCCCCc-HHHHHHHHHHHHhh---cccccCHHHHHHH
Q 002386 703 SSCGIGPIAFVASAQSLEKIPQSLTSSGRFD---------FHVQLPAPA-ASERKAILEHEIQR---RSLECSDEILLDV 769 (929)
Q Consensus 703 ~~~~~~~VivIattn~~~~L~~~L~~~~Rf~---------~~i~l~~Pd-~~eR~~IL~~~l~~---~~~~~~d~~l~~L 769 (929)
.......|.||++|+..- ..|.+.|||. ..|.+|+.- ..++...|.+++.+ ..+.++++.+..|
T Consensus 441 ~~~~~vdirvi~ath~dl---~~lv~~g~fredLyyrL~~~~i~lP~lr~R~d~~~~l~~~~~~~~~~~~~l~~~~~~~l 517 (606)
T COG3284 441 GTRIKVDIRVIAATHRDL---AQLVEQGRFREDLYYRLNAFVITLPPLRERSDRIPLLDRILKRENDWRLQLDDDALARL 517 (606)
T ss_pred CcceeEEEEEEeccCcCH---HHHHHcCCchHHHHHHhcCeeeccCchhcccccHHHHHHHHHHccCCCccCCHHHHHHH
Confidence 001122588999887532 2344455664 344555442 23344455555544 3467889988888
Q ss_pred HhhcCCCChhhHHHHHHHHHH
Q 002386 770 ASKCDGYDAYDLEILVDRTVH 790 (929)
Q Consensus 770 A~~teG~s~~DL~~Lv~~A~~ 790 (929)
-....-.+-++|.+++++++.
T Consensus 518 ~~~~WPGNirel~~v~~~~~~ 538 (606)
T COG3284 518 LAYRWPGNIRELDNVIERLAA 538 (606)
T ss_pred HhCCCCCcHHHHHHHHHHHHH
Confidence 887766688899998888753
No 318
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.74 E-value=3.7e-05 Score=91.54 Aligned_cols=52 Identities=25% Similarity=0.388 Sum_probs=44.7
Q ss_pred CccCCCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHcCC
Q 002386 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSL 904 (929)
Q Consensus 841 ~~w~dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~gl 904 (929)
..|+++.|.+.+++.|...+. .-+.+..+||+||+|||||++|+++|+..+.
T Consensus 12 ktFddVIGQe~vv~~L~~aI~------------~grl~HAyLF~GPpGvGKTTlAriLAK~LnC 63 (702)
T PRK14960 12 RNFNELVGQNHVSRALSSALE------------RGRLHHAYLFTGTRGVGKTTIARILAKCLNC 63 (702)
T ss_pred CCHHHhcCcHHHHHHHHHHHH------------cCCCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 579999999999999988875 2245678899999999999999999998754
No 319
>PLN03025 replication factor C subunit; Provisional
Probab=97.72 E-value=4.2e-05 Score=85.81 Aligned_cols=61 Identities=25% Similarity=0.373 Sum_probs=47.6
Q ss_pred CccCCCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHc-----CCceEEEecccc
Q 002386 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC-----SLRFISVKGPEL 914 (929)
Q Consensus 841 ~~w~dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~-----glnfIsVkg~EL 914 (929)
..++++.|.+++.+.|+..+... +. .++|||||||||||++|.++|+++ ..+++.++.++.
T Consensus 10 ~~l~~~~g~~~~~~~L~~~~~~~------------~~-~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~ 75 (319)
T PLN03025 10 TKLDDIVGNEDAVSRLQVIARDG------------NM-PNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDD 75 (319)
T ss_pred CCHHHhcCcHHHHHHHHHHHhcC------------CC-ceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeeccccc
Confidence 57889999999988888765421 12 259999999999999999999986 235777877764
No 320
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.69 E-value=5.2e-05 Score=87.56 Aligned_cols=52 Identities=21% Similarity=0.316 Sum_probs=44.3
Q ss_pred CccCCCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHcCC
Q 002386 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSL 904 (929)
Q Consensus 841 ~~w~dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~gl 904 (929)
..|++|.|.+.+++.|...++- -+.+..+||+||||||||++|+++|+....
T Consensus 13 ~~~~eiiGq~~~~~~L~~~~~~------------~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c 64 (397)
T PRK14955 13 KKFADITAQEHITRTIQNSLRM------------GRVGHGYIFSGLRGVGKTTAARVFAKAVNC 64 (397)
T ss_pred CcHhhccChHHHHHHHHHHHHh------------CCcceeEEEECCCCCCHHHHHHHHHHHhcC
Confidence 5799999999999998887752 256678999999999999999999987743
No 321
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.69 E-value=8.6e-05 Score=83.07 Aligned_cols=60 Identities=18% Similarity=0.221 Sum_probs=46.5
Q ss_pred CCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHcCC-------ceEEEec
Q 002386 845 DVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSL-------RFISVKG 911 (929)
Q Consensus 845 dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~gl-------nfIsVkg 911 (929)
++-|++++++.+-+.+.-.. ... -..+..++|.||||||||+||+++|+.++. +|.++++
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a------~g~-~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~ 118 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAA------QGL-EERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKW 118 (361)
T ss_pred hccCcHHHHHHHHHHHHHHH------hcC-CCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEe
Confidence 78999999877766553221 111 123567899999999999999999999977 8999988
No 322
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=5e-05 Score=82.18 Aligned_cols=81 Identities=26% Similarity=0.469 Sum_probs=58.6
Q ss_pred CCCchhhHHHHHHHHhcCCCchhhhhhCCCC---CCceeEEecCCCCcHHHHHHHHHHHcCCceEEEecccccc-cccCh
Q 002386 846 VGGLTDIQNAIKEMIELPSKFPNIFAQAPLR---LRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLN-KYIGA 921 (929)
Q Consensus 846 IgGL~~vk~~L~e~le~p~k~~~if~~~~lr---~~sGiLLyGpPGtGKT~LA~alA~e~glnfIsVkg~ELl~-kyIG~ 921 (929)
|.|++++|+.+.-.+.. +|.+.--.-.+| .|++||+.||+|.|||.+|+.+|+..|.+||.|-..-+.. .|||.
T Consensus 17 IIGQ~~AKkaVAIALRN--R~RR~qL~~~lr~EV~PKNILMIGpTGVGKTEIARRLAkl~~aPFiKVEATKfTEVGYVGr 94 (444)
T COG1220 17 IIGQDEAKKAVAIALRN--RWRRMQLEEELRDEVTPKNILMIGPTGVGKTEIARRLAKLAGAPFIKVEATKFTEVGYVGR 94 (444)
T ss_pred hcCcHHHHHHHHHHHHH--HHHHHhcCHHHhhccCccceEEECCCCCcHHHHHHHHHHHhCCCeEEEEeeeeeecccccc
Confidence 67899999888766543 222211111122 4789999999999999999999999999999996654433 78885
Q ss_pred -hhHHHhh
Q 002386 922 -SEQAVRR 928 (929)
Q Consensus 922 -SEq~VRd 928 (929)
=|+-|||
T Consensus 95 DVesivRD 102 (444)
T COG1220 95 DVESIIRD 102 (444)
T ss_pred cHHHHHHH
Confidence 4666665
No 323
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=97.68 E-value=0.00053 Score=80.24 Aligned_cols=31 Identities=32% Similarity=0.324 Sum_probs=26.1
Q ss_pred CCCCceEEEECCCCcHHHHHHHHHHHHhccC
Q 002386 587 LPLPGHILIHGPPGSGKTSLAKAVAKSLEHH 617 (929)
Q Consensus 587 ~~~~~~vLL~GppGtGKTtLaralA~~L~~~ 617 (929)
+.++.-+=|.|.+|||||++++++...+...
T Consensus 32 v~~GE~lgIvGESGsGKSt~a~~i~gll~~~ 62 (539)
T COG1123 32 VEPGEILGIVGESGSGKSTLALALMGLLPEG 62 (539)
T ss_pred ecCCcEEEEEcCCCCCHHHHHHHHhccCCCC
Confidence 4555668899999999999999999887644
No 324
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.67 E-value=0.00025 Score=75.27 Aligned_cols=80 Identities=21% Similarity=0.283 Sum_probs=51.5
Q ss_pred CCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccccccCchh-----------------------hHHH
Q 002386 586 HLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGP-----------------------IIRQ 642 (929)
Q Consensus 586 ~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~~~~~~-----------------------~~~~ 642 (929)
|++.+.-++|+|+||+|||+++..+|....... ..++|+++..+...... +...
T Consensus 19 Gi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~---~~v~yi~~e~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (225)
T PRK09361 19 GFERGTITQIYGPPGSGKTNICLQLAVEAAKNG---KKVIYIDTEGLSPERFKQIAGEDFEELLSNIIIFEPSSFEEQSE 95 (225)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCC---CeEEEEECCCCCHHHHHHHHhhChHhHhhCeEEEeCCCHHHHHH
Confidence 466667799999999999999999998764332 56778887732111111 1111
Q ss_pred HHHHHHHHHHhcCCcEEEEcccccccc
Q 002386 643 ALSNFISEALDHAPSIVIFDNLDSIIS 669 (929)
Q Consensus 643 ~l~~~f~~a~~~~PsVL~LDEiD~L~~ 669 (929)
.+..+..... ..+.+++||.+..++.
T Consensus 96 ~i~~~~~~~~-~~~~lvVIDsi~al~~ 121 (225)
T PRK09361 96 AIRKAEKLAK-ENVGLIVLDSATSLYR 121 (225)
T ss_pred HHHHHHHHHH-hcccEEEEeCcHHHhH
Confidence 1222221111 5789999999998874
No 325
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=97.66 E-value=0.00035 Score=74.86 Aligned_cols=125 Identities=10% Similarity=0.076 Sum_probs=81.4
Q ss_pred CCceEEEECCCCcHHHHHHHHHHHHhccCccc----------------eeeEEEEeccccccCchhhHHHHHHHHHHHHH
Q 002386 589 LPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL----------------VAHIVFVCCSRLSLEKGPIIRQALSNFISEAL 652 (929)
Q Consensus 589 ~~~~vLL~GppGtGKTtLaralA~~L~~~~~~----------------~~~~~~V~~s~L~~~~~~~~~~~l~~~f~~a~ 652 (929)
++..+||+|+.|+||..+|.++|+.+-..... ...+.++.... ..-..++++...+.+...+.
T Consensus 6 ~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~-~~I~id~ir~l~~~l~~~s~ 84 (261)
T PRK05818 6 KTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQK-NPIKKEDALSIINKLNRPSV 84 (261)
T ss_pred CCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCc-ccCCHHHHHHHHHHHccCch
Confidence 45679999999999999999999988543110 01122221111 11234455554444333332
Q ss_pred h-cCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCCCcEEEEEecCCCCccccccccCCC
Q 002386 653 D-HAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGR 731 (929)
Q Consensus 653 ~-~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~VivIattn~~~~L~~~L~~~~R 731 (929)
. ....|++||++|.+-. .-.+.|+..+++... ++++|.+|+.++.+.+.++| |
T Consensus 85 e~~~~KV~II~~ae~m~~---------------~AaNaLLK~LEEPp~---------~t~fiLit~~~~~lLpTI~S--R 138 (261)
T PRK05818 85 ESNGKKIYIIYGIEKLNK---------------QSANSLLKLIEEPPK---------NTYGIFTTRNENNILNTILS--R 138 (261)
T ss_pred hcCCCEEEEeccHhhhCH---------------HHHHHHHHhhcCCCC---------CeEEEEEECChHhCchHhhh--h
Confidence 2 3456999999999852 556777777777432 47888888999999999999 7
Q ss_pred cceEeeCCCC
Q 002386 732 FDFHVQLPAP 741 (929)
Q Consensus 732 f~~~i~l~~P 741 (929)
.. .+.++.+
T Consensus 139 Cq-~~~~~~~ 147 (261)
T PRK05818 139 CV-QYVVLSK 147 (261)
T ss_pred ee-eeecCCh
Confidence 65 4667666
No 326
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.65 E-value=7.1e-05 Score=85.47 Aligned_cols=51 Identities=31% Similarity=0.371 Sum_probs=43.1
Q ss_pred CccCCCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHcC
Q 002386 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACS 903 (929)
Q Consensus 841 ~~w~dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~g 903 (929)
..|+++.|.+.+.+.|+..+.. -+.+..+||+||||||||++|+++|++..
T Consensus 13 ~~~~~iiGq~~~~~~l~~~~~~------------~~~~h~~L~~Gp~G~GKTtla~~la~~l~ 63 (363)
T PRK14961 13 QYFRDIIGQKHIVTAISNGLSL------------GRIHHAWLLSGTRGVGKTTIARLLAKSLN 63 (363)
T ss_pred CchhhccChHHHHHHHHHHHHc------------CCCCeEEEEecCCCCCHHHHHHHHHHHhc
Confidence 5899999999999999887652 13456689999999999999999999875
No 327
>PRK13342 recombination factor protein RarA; Reviewed
Probab=97.65 E-value=5.6e-05 Score=87.82 Aligned_cols=60 Identities=30% Similarity=0.496 Sum_probs=47.0
Q ss_pred CccCCCCCchhhHHH---HHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHcCCceEEEeccc
Q 002386 841 SGWDDVGGLTDIQNA---IKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPE 913 (929)
Q Consensus 841 ~~w~dIgGL~~vk~~---L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~glnfIsVkg~E 913 (929)
..++++.|.+.+... |...++- ....++||+||||||||++|+++|+.++.+|+.+++..
T Consensus 9 ~~l~d~vGq~~~v~~~~~L~~~i~~-------------~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~ 71 (413)
T PRK13342 9 KTLDEVVGQEHLLGPGKPLRRMIEA-------------GRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVT 71 (413)
T ss_pred CCHHHhcCcHHHhCcchHHHHHHHc-------------CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccc
Confidence 457788888877444 7666641 11247999999999999999999999999999998753
No 328
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.65 E-value=8.2e-05 Score=92.38 Aligned_cols=75 Identities=25% Similarity=0.357 Sum_probs=55.2
Q ss_pred cCCCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHcCCceEEEeccccc-------
Q 002386 843 WDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELL------- 915 (929)
Q Consensus 843 w~dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~glnfIsVkg~ELl------- 915 (929)
-.+..|++.+|+.+.+.+...... +-.....++|+||||||||++|+++|+.++.+|+++.....-
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~-------~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g 393 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRV-------NKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRG 393 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhc-------ccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhcc
Confidence 345789999999998877633221 111234689999999999999999999999999988654432
Q ss_pred --ccccChhhH
Q 002386 916 --NKYIGASEQ 924 (929)
Q Consensus 916 --~kyIG~SEq 924 (929)
..|+|+..-
T Consensus 394 ~~~~~~g~~~G 404 (784)
T PRK10787 394 HRRTYIGSMPG 404 (784)
T ss_pred chhccCCCCCc
Confidence 257776543
No 329
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=97.65 E-value=4.1e-05 Score=87.06 Aligned_cols=49 Identities=22% Similarity=0.310 Sum_probs=37.4
Q ss_pred cccccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhc
Q 002386 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLE 615 (929)
Q Consensus 550 ~~~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~ 615 (929)
.+.|.++.|++.++..+.-. . -.+.++|++||||||||++|+-+...|.
T Consensus 175 ~~D~~DV~GQ~~AKrAleiA--A---------------AGgHnLl~~GpPGtGKTmla~Rl~~lLP 223 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIA--A---------------AGGHNLLLVGPPGTGKTMLASRLPGLLP 223 (490)
T ss_pred CcchhhhcCcHHHHHHHHHH--H---------------hcCCcEEEecCCCCchHHhhhhhcccCC
Confidence 56788999998887766431 1 1135799999999999999998877654
No 330
>PHA02244 ATPase-like protein
Probab=97.65 E-value=0.00016 Score=81.06 Aligned_cols=34 Identities=35% Similarity=0.485 Sum_probs=31.7
Q ss_pred CceeEEecCCCCcHHHHHHHHHHHcCCceEEEec
Q 002386 878 RSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKG 911 (929)
Q Consensus 878 ~sGiLLyGpPGtGKT~LA~alA~e~glnfIsVkg 911 (929)
+..+||+||||||||++|+++|..+|.+|+.+++
T Consensus 119 ~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~ 152 (383)
T PHA02244 119 NIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNA 152 (383)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEec
Confidence 4579999999999999999999999999999974
No 331
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=97.64 E-value=0.0007 Score=74.29 Aligned_cols=132 Identities=17% Similarity=0.222 Sum_probs=85.5
Q ss_pred CCceEEEECCCCcHHHHHHHHHHHHhccCccc------------------eeeEEEEeccccccCchhhHHHHHHHHHHH
Q 002386 589 LPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL------------------VAHIVFVCCSRLSLEKGPIIRQALSNFISE 650 (929)
Q Consensus 589 ~~~~vLL~GppGtGKTtLaralA~~L~~~~~~------------------~~~~~~V~~s~L~~~~~~~~~~~l~~~f~~ 650 (929)
.+..+||+|| .||+++|+++|+.+...... ...+.++.... ..-..+.++..+..+...
T Consensus 23 l~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~-~~I~idqIR~l~~~~~~~ 99 (290)
T PRK07276 23 LNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQG-QVIKTDTIRELVKNFSQS 99 (290)
T ss_pred cceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCC-CcCCHHHHHHHHHHHhhC
Confidence 3456999996 68999999999988643210 01122232211 011245555555444443
Q ss_pred HHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCCCcEEEEEecCCCCccccccccCC
Q 002386 651 ALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSG 730 (929)
Q Consensus 651 a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~VivIattn~~~~L~~~L~~~~ 730 (929)
.......|++||++|.+.. .-.+.|+..+++... ++++|.+|++++.+.|.++|
T Consensus 100 p~~~~~kV~II~~ad~m~~---------------~AaNaLLKtLEEPp~---------~t~~iL~t~~~~~lLpTI~S-- 153 (290)
T PRK07276 100 GYEGKQQVFIIKDADKMHV---------------NAANSLLKVIEEPQS---------EIYIFLLTNDENKVLPTIKS-- 153 (290)
T ss_pred cccCCcEEEEeehhhhcCH---------------HHHHHHHHHhcCCCC---------CeEEEEEECChhhCchHHHH--
Confidence 4444557999999999852 456777777777442 47888888889999999999
Q ss_pred CcceEeeCCCCcHHHHHHHHH
Q 002386 731 RFDFHVQLPAPAASERKAILE 751 (929)
Q Consensus 731 Rf~~~i~l~~Pd~~eR~~IL~ 751 (929)
|.. .++|++ +.++..+++.
T Consensus 154 Rcq-~i~f~~-~~~~~~~~L~ 172 (290)
T PRK07276 154 RTQ-IFHFPK-NEAYLIQLLE 172 (290)
T ss_pred cce-eeeCCC-cHHHHHHHHH
Confidence 776 778866 5555555554
No 332
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=97.63 E-value=6.9e-05 Score=92.87 Aligned_cols=183 Identities=17% Similarity=0.177 Sum_probs=98.6
Q ss_pred CCCCCceEEEECCCCcHHHHHHH-HHHHHhccCccceeeEEEEeccccccCchhhHHHHHHHHHHHHHhc----------
Q 002386 586 HLPLPGHILIHGPPGSGKTSLAK-AVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDH---------- 654 (929)
Q Consensus 586 ~~~~~~~vLL~GppGtGKTtLar-alA~~L~~~~~~~~~~~~V~~s~L~~~~~~~~~~~l~~~f~~a~~~---------- 654 (929)
.+...++++++||||+|||++.- ++-.++ ...+++++.+.-... ...+. .++.-..+
T Consensus 1490 ~lnt~R~~i~cGppGSgK~mlM~~sLrs~~------~~ev~~~Nfs~~t~T-----~s~ls-~Ler~t~yy~~tg~~~l~ 1557 (3164)
T COG5245 1490 ALNTLRSYIYCGPPGSGKEMLMCPSLRSEL------ITEVKYFNFSTCTMT-----PSKLS-VLERETEYYPNTGVVRLY 1557 (3164)
T ss_pred HHhccceEEEECCCCCccchhcchhhhhhh------heeeeEEeeccccCC-----HHHHH-HHHhhceeeccCCeEEEc
Confidence 45556899999999999999742 222222 266777776543211 11111 11111111
Q ss_pred -C----CcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHH---hcccccCccCCCcEEEEEecCCCCccc---
Q 002386 655 -A----PSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDE---YGEKRKSSCGIGPIAFVASAQSLEKIP--- 723 (929)
Q Consensus 655 -~----PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~---~~~~~~~~~~~~~VivIattn~~~~L~--- 723 (929)
+ --|||.|||+.-- .....++ .+.-++..++.. +..-...+....++++.+++|++.+..
T Consensus 1558 PK~~vK~lVLFcDeInLp~---~~~y~~~------~vI~FlR~l~e~QGfw~s~~~~wvTI~~i~l~Gacnp~td~gRv~ 1628 (3164)
T COG5245 1558 PKPVVKDLVLFCDEINLPY---GFEYYPP------TVIVFLRPLVERQGFWSSIAVSWVTICGIILYGACNPGTDEGRVK 1628 (3164)
T ss_pred cCcchhheEEEeeccCCcc---ccccCCC------ceEEeeHHHHHhcccccchhhhHhhhcceEEEccCCCCCCcccCc
Confidence 1 1389999998322 2222222 222333344443 111112244455799999999877542
Q ss_pred --cccccCCCcceEeeCCCCcHHHHHHHHHHHHhhcccc------cCHHH-------HHHH-------HhhcCCCChhhH
Q 002386 724 --QSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLE------CSDEI-------LLDV-------ASKCDGYDAYDL 781 (929)
Q Consensus 724 --~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~------~~d~~-------l~~L-------A~~teG~s~~DL 781 (929)
..+.| -...+.+..|.......|.+.++...-+- +.+.. +... -...-||+|+||
T Consensus 1629 ~~eRf~r---~~v~vf~~ype~~SL~~Iyea~l~~s~l~~~ef~~~se~~~~aSv~ly~~~k~~~k~~lq~~y~y~pReL 1705 (3164)
T COG5245 1629 YYERFIR---KPVFVFCCYPELASLRNIYEAVLMGSYLCFDEFNRLSEETMSASVELYLSSKDKTKFFLQMNYGYKPREL 1705 (3164)
T ss_pred cHHHHhc---CceEEEecCcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccChHHH
Confidence 33332 12456788999999999999877642211 11111 1111 112268999998
Q ss_pred HHHHHHHHHHH
Q 002386 782 EILVDRTVHAA 792 (929)
Q Consensus 782 ~~Lv~~A~~~a 792 (929)
.++++...-.|
T Consensus 1706 tR~lr~i~~ya 1716 (3164)
T COG5245 1706 TRSLRAIFGYA 1716 (3164)
T ss_pred HHHHHHHHhHH
Confidence 88776554433
No 333
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.63 E-value=0.001 Score=65.36 Aligned_cols=27 Identities=41% Similarity=0.658 Sum_probs=24.4
Q ss_pred ceEEEECCCCcHHHHHHHHHHHHhccC
Q 002386 591 GHILIHGPPGSGKTSLAKAVAKSLEHH 617 (929)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~L~~~ 617 (929)
-.+.++|+||+||||++.-++..|...
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~ 32 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREK 32 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhc
Confidence 359999999999999999999999755
No 334
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.63 E-value=8.4e-05 Score=83.14 Aligned_cols=61 Identities=21% Similarity=0.267 Sum_probs=51.0
Q ss_pred CccCCCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHcCCceEEEeccc
Q 002386 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPE 913 (929)
Q Consensus 841 ~~w~dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~glnfIsVkg~E 913 (929)
..++++.|.+++++.++..+.. -+.+..+|||||||+|||++|+++|++.+.+|+.+++.+
T Consensus 18 ~~~~~~~~~~~~~~~l~~~~~~------------~~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~ 78 (316)
T PHA02544 18 STIDECILPAADKETFKSIVKK------------GRIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD 78 (316)
T ss_pred CcHHHhcCcHHHHHHHHHHHhc------------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc
Confidence 4788899999999998887751 123455667999999999999999999999999998887
No 335
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.63 E-value=6.1e-05 Score=87.37 Aligned_cols=52 Identities=21% Similarity=0.271 Sum_probs=43.4
Q ss_pred CccCCCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHcCC
Q 002386 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSL 904 (929)
Q Consensus 841 ~~w~dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~gl 904 (929)
..|+++.|.+.+...|...+.. -+.+..+||+||||||||++|+++|+..+.
T Consensus 15 ~~f~dvVGQe~iv~~L~~~i~~------------~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnc 66 (484)
T PRK14956 15 QFFRDVIHQDLAIGALQNALKS------------GKIGHAYIFFGPRGVGKTTIARILAKRLNC 66 (484)
T ss_pred CCHHHHhChHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHhcCc
Confidence 5789999999999988877652 234556899999999999999999998764
No 336
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.63 E-value=0.00039 Score=77.28 Aligned_cols=81 Identities=23% Similarity=0.257 Sum_probs=53.7
Q ss_pred CCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEecccc----------------ccCchhhHHHHHHHHHH
Q 002386 586 HLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRL----------------SLEKGPIIRQALSNFIS 649 (929)
Q Consensus 586 ~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L----------------~~~~~~~~~~~l~~~f~ 649 (929)
|+|.++-++|+||||||||+|+..++....... ..+.++++... .-......++.+..+..
T Consensus 51 Glp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g---~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~ 127 (321)
T TIGR02012 51 GLPRGRIIEIYGPESSGKTTLALHAIAEAQKAG---GTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAET 127 (321)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcC---CcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHH
Confidence 577777899999999999999988777664332 34556665431 11111223344444433
Q ss_pred HHHhcCCcEEEEcccccccc
Q 002386 650 EALDHAPSIVIFDNLDSIIS 669 (929)
Q Consensus 650 ~a~~~~PsVL~LDEiD~L~~ 669 (929)
......+.++++|-+..+.+
T Consensus 128 li~~~~~~lIVIDSv~al~~ 147 (321)
T TIGR02012 128 LVRSGAVDIIVVDSVAALVP 147 (321)
T ss_pred HhhccCCcEEEEcchhhhcc
Confidence 44557889999999998875
No 337
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.61 E-value=5.3e-05 Score=81.50 Aligned_cols=78 Identities=22% Similarity=0.394 Sum_probs=56.9
Q ss_pred CCCchhhHHHHHHHHhcCCCchhhhhhCC---CC-CCceeEEecCCCCcHHHHHHHHHHHcCCceEEEecccccc-cccC
Q 002386 846 VGGLTDIQNAIKEMIELPSKFPNIFAQAP---LR-LRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLN-KYIG 920 (929)
Q Consensus 846 IgGL~~vk~~L~e~le~p~k~~~if~~~~---lr-~~sGiLLyGpPGtGKT~LA~alA~e~glnfIsVkg~ELl~-kyIG 920 (929)
+.|++.+|+.|.-.+ .-.|.++..... +. ..|+|||.||+|||||+||+.+|+.++.+|-.-+...|-. .|||
T Consensus 63 VIGQe~AKKvLsVAV--YNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVG 140 (408)
T COG1219 63 VIGQEQAKKVLSVAV--YNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVG 140 (408)
T ss_pred eecchhhhceeeeee--hhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccc
Confidence 567777777665332 234555433221 22 2579999999999999999999999999999988887764 7999
Q ss_pred hhhHH
Q 002386 921 ASEQA 925 (929)
Q Consensus 921 ~SEq~ 925 (929)
+-=.|
T Consensus 141 EDVEN 145 (408)
T COG1219 141 EDVEN 145 (408)
T ss_pred hhHHH
Confidence 85443
No 338
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.60 E-value=0.0001 Score=71.21 Aligned_cols=44 Identities=39% Similarity=0.659 Sum_probs=38.0
Q ss_pred CceeEEecCCCCcHHHHHHHHHHHc---CCceEEEecccccccccCh
Q 002386 878 RSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKYIGA 921 (929)
Q Consensus 878 ~sGiLLyGpPGtGKT~LA~alA~e~---glnfIsVkg~ELl~kyIG~ 921 (929)
..+++++||||||||+++++++... +.+++.+.+.+....+...
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~ 65 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVA 65 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHH
Confidence 4579999999999999999999998 8999999998877655433
No 339
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.59 E-value=0.00069 Score=77.24 Aligned_cols=81 Identities=25% Similarity=0.384 Sum_probs=53.8
Q ss_pred CCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccccccCc----------hhh----HHHHHHHHHHHH
Q 002386 586 HLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEK----------GPI----IRQALSNFISEA 651 (929)
Q Consensus 586 ~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~~~~----------~~~----~~~~l~~~f~~a 651 (929)
|++++.-++|+|+||+|||+++..+|..+.... ..+.|++..+-.... ... ....+..+++..
T Consensus 78 Gi~~GslvLI~G~pG~GKStLllq~a~~~a~~g---~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i 154 (372)
T cd01121 78 GLVPGSVILIGGDPGIGKSTLLLQVAARLAKRG---GKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASI 154 (372)
T ss_pred CccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcC---CeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHH
Confidence 466667799999999999999999998875432 356666654311100 000 011234455555
Q ss_pred HhcCCcEEEEcccccccc
Q 002386 652 LDHAPSIVIFDNLDSIIS 669 (929)
Q Consensus 652 ~~~~PsVL~LDEiD~L~~ 669 (929)
....|.+|+||++..++.
T Consensus 155 ~~~~~~lVVIDSIq~l~~ 172 (372)
T cd01121 155 EELKPDLVIIDSIQTVYS 172 (372)
T ss_pred HhcCCcEEEEcchHHhhc
Confidence 667899999999998863
No 340
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=97.58 E-value=8.6e-05 Score=83.65 Aligned_cols=62 Identities=24% Similarity=0.436 Sum_probs=49.4
Q ss_pred CccCCCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHcC-----CceEEEeccccc
Q 002386 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACS-----LRFISVKGPELL 915 (929)
Q Consensus 841 ~~w~dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~g-----lnfIsVkg~ELl 915 (929)
..|+++.|.+++++.|...+..+ + ..++|||||||||||++|+++|+++. .+++.+++.++.
T Consensus 12 ~~~~~~~g~~~~~~~L~~~~~~~------------~-~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~ 78 (337)
T PRK12402 12 ALLEDILGQDEVVERLSRAVDSP------------N-LPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFF 78 (337)
T ss_pred CcHHHhcCCHHHHHHHHHHHhCC------------C-CceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhh
Confidence 46888999999999988876521 1 12699999999999999999999873 457888887764
No 341
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.56 E-value=6.5e-05 Score=82.86 Aligned_cols=36 Identities=36% Similarity=0.715 Sum_probs=32.8
Q ss_pred ceeEEecCCCCcHHHHHHHHHHHcCCceEEEecccc
Q 002386 879 SNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPEL 914 (929)
Q Consensus 879 sGiLLyGpPGtGKT~LA~alA~e~glnfIsVkg~EL 914 (929)
.+||||||||||||+.|+-+|+.+|+.+-...|.|+
T Consensus 385 RNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDV 420 (630)
T KOG0742|consen 385 RNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDV 420 (630)
T ss_pred hheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCc
Confidence 369999999999999999999999999988887765
No 342
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=97.54 E-value=0.00015 Score=87.15 Aligned_cols=135 Identities=21% Similarity=0.253 Sum_probs=72.9
Q ss_pred ceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEecc--ccccCchhhHHHHH-HHHHHHHH---hcCCcEEEEccc
Q 002386 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCS--RLSLEKGPIIRQAL-SNFISEAL---DHAPSIVIFDNL 664 (929)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s--~L~~~~~~~~~~~l-~~~f~~a~---~~~PsVL~LDEi 664 (929)
-||||.|.||+|||.|.|.+++.+.. -+|++.. .-.|......+... .+|.-+|- ...+.|.+|||+
T Consensus 320 InILLvGDPgtaKSqlLk~v~~~aPr-------~vytsgkgss~~GLTAav~rd~~tge~~LeaGALVlAD~Gv~cIDEf 392 (682)
T COG1241 320 IHILLVGDPGTAKSQLLKYVAKLAPR-------GVYTSGKGSSAAGLTAAVVRDKVTGEWVLEAGALVLADGGVCCIDEF 392 (682)
T ss_pred eeEEEcCCCchhHHHHHHHHHhhCCc-------eEEEccccccccCceeEEEEccCCCeEEEeCCEEEEecCCEEEEEec
Confidence 47999999999999999999987641 2223221 11111111111100 11111110 124679999999
Q ss_pred cccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccC----ccCCCcEEEEEecCCCC-------------ccccccc
Q 002386 665 DSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKS----SCGIGPIAFVASAQSLE-------------KIPQSLT 727 (929)
Q Consensus 665 D~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~----~~~~~~VivIattn~~~-------------~L~~~L~ 727 (929)
|.+- ..-...+...|+...-.-.. ..-..+..++|++|+.. .+++.|+
T Consensus 393 dKm~---------------~~dr~aihEaMEQQtIsIaKAGI~atLnARcsvLAAaNP~~Gryd~~~~~~enI~l~~~lL 457 (682)
T COG1241 393 DKMN---------------EEDRVAIHEAMEQQTISIAKAGITATLNARCSVLAAANPKFGRYDPKKTVAENINLPAPLL 457 (682)
T ss_pred cCCC---------------hHHHHHHHHHHHhcEeeecccceeeecchhhhhhhhhCCCCCcCCCCCCHHHhcCCChhHH
Confidence 9873 12234455566543211000 01112456788888755 3678899
Q ss_pred cCCCcceEe-eCCCCcHHHHHHH
Q 002386 728 SSGRFDFHV-QLPAPAASERKAI 749 (929)
Q Consensus 728 ~~~Rf~~~i-~l~~Pd~~eR~~I 749 (929)
+ |||..+ -...|+.+.-..+
T Consensus 458 S--RFDLifvl~D~~d~~~D~~i 478 (682)
T COG1241 458 S--RFDLIFVLKDDPDEEKDEEI 478 (682)
T ss_pred h--hCCeeEEecCCCCccchHHH
Confidence 9 999665 3355655433333
No 343
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.54 E-value=0.00011 Score=87.19 Aligned_cols=52 Identities=23% Similarity=0.313 Sum_probs=44.3
Q ss_pred CccCCCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHcCC
Q 002386 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSL 904 (929)
Q Consensus 841 ~~w~dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~gl 904 (929)
..|+++.|.+.+.+.|...+.. -+++..+||+||||||||++|+++|+.+..
T Consensus 13 ~~f~divGq~~v~~~L~~~~~~------------~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 64 (509)
T PRK14958 13 RCFQEVIGQAPVVRALSNALDQ------------QYLHHAYLFTGTRGVGKTTISRILAKCLNC 64 (509)
T ss_pred CCHHHhcCCHHHHHHHHHHHHh------------CCCCeeEEEECCCCCCHHHHHHHHHHHhcC
Confidence 5799999999999999988752 245667899999999999999999997754
No 344
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.53 E-value=7e-05 Score=71.07 Aligned_cols=31 Identities=29% Similarity=0.615 Sum_probs=28.3
Q ss_pred eEEecCCCCcHHHHHHHHHHHcCCceEEEec
Q 002386 881 VLLYGPPGCGKTHIVGAAAAACSLRFISVKG 911 (929)
Q Consensus 881 iLLyGpPGtGKT~LA~alA~e~glnfIsVkg 911 (929)
|++.|+|||||||+|+.+|+.+|+.++.++-
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d~ 32 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMDD 32 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEecc
Confidence 6899999999999999999999988887765
No 345
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=97.53 E-value=0.0013 Score=78.21 Aligned_cols=31 Identities=35% Similarity=0.432 Sum_probs=26.5
Q ss_pred CCCCceEEEECCCCcHHHHHHHHHHHHhccC
Q 002386 587 LPLPGHILIHGPPGSGKTSLAKAVAKSLEHH 617 (929)
Q Consensus 587 ~~~~~~vLL~GppGtGKTtLaralA~~L~~~ 617 (929)
+.++..+=|.|+.|+|||||.|.|+..+...
T Consensus 26 ~~~G~riGLvG~NGaGKSTLLkilaG~~~~~ 56 (530)
T COG0488 26 LNPGERIGLVGRNGAGKSTLLKILAGELEPD 56 (530)
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHcCCCcCC
Confidence 4555679999999999999999999988544
No 346
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.53 E-value=0.00057 Score=79.97 Aligned_cols=81 Identities=22% Similarity=0.361 Sum_probs=54.1
Q ss_pred CCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccccccCchhh--------------HHHHHHHHHHHH
Q 002386 586 HLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPI--------------IRQALSNFISEA 651 (929)
Q Consensus 586 ~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~~~~~~~--------------~~~~l~~~f~~a 651 (929)
|++++.-+||+|+||+|||+++..+|..+.... ..+.|++..+-...-... .+..+..+++..
T Consensus 76 Gi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g---~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i 152 (446)
T PRK11823 76 GLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAG---GKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATI 152 (446)
T ss_pred CccCCEEEEEECCCCCCHHHHHHHHHHHHHhcC---CeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHH
Confidence 466677799999999999999999998775322 456677654321110000 001234455555
Q ss_pred HhcCCcEEEEcccccccc
Q 002386 652 LDHAPSIVIFDNLDSIIS 669 (929)
Q Consensus 652 ~~~~PsVL~LDEiD~L~~ 669 (929)
....|.+|+||.+..++.
T Consensus 153 ~~~~~~lVVIDSIq~l~~ 170 (446)
T PRK11823 153 EEEKPDLVVIDSIQTMYS 170 (446)
T ss_pred HhhCCCEEEEechhhhcc
Confidence 667899999999998874
No 347
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.52 E-value=0.0002 Score=75.41 Aligned_cols=23 Identities=48% Similarity=0.694 Sum_probs=20.2
Q ss_pred CceEEEECCCCcHHHHHHHHHHH
Q 002386 590 PGHILIHGPPGSGKTSLAKAVAK 612 (929)
Q Consensus 590 ~~~vLL~GppGtGKTtLaralA~ 612 (929)
+..+||||+||+||||+|+.++.
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~~ 34 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLPG 34 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcCC
Confidence 35599999999999999999863
No 348
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.51 E-value=0.00016 Score=67.59 Aligned_cols=24 Identities=58% Similarity=0.886 Sum_probs=21.8
Q ss_pred EEEECCCCcHHHHHHHHHHHHhcc
Q 002386 593 ILIHGPPGSGKTSLAKAVAKSLEH 616 (929)
Q Consensus 593 vLL~GppGtGKTtLaralA~~L~~ 616 (929)
|.|+|+||+|||++|+.+|+.+..
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~ 24 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLK 24 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHH
Confidence 579999999999999999998863
No 349
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.51 E-value=0.00066 Score=75.52 Aligned_cols=81 Identities=23% Similarity=0.272 Sum_probs=53.5
Q ss_pred CCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccc----------------cccCchhhHHHHHHHHHH
Q 002386 586 HLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSR----------------LSLEKGPIIRQALSNFIS 649 (929)
Q Consensus 586 ~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~----------------L~~~~~~~~~~~l~~~f~ 649 (929)
|+|.++-++|+||||||||+|+-.++....... ..+.|+++.. +.-......++.+..+-.
T Consensus 51 Glp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g---~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~ 127 (325)
T cd00983 51 GYPKGRIIEIYGPESSGKTTLALHAIAEAQKLG---GTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADS 127 (325)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcC---CCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHH
Confidence 577777899999999999999999887664332 4466776633 111111222333333333
Q ss_pred HHHhcCCcEEEEcccccccc
Q 002386 650 EALDHAPSIVIFDNLDSIIS 669 (929)
Q Consensus 650 ~a~~~~PsVL~LDEiD~L~~ 669 (929)
......+.+|++|-+..+++
T Consensus 128 li~s~~~~lIVIDSvaal~~ 147 (325)
T cd00983 128 LVRSGAVDLIVVDSVAALVP 147 (325)
T ss_pred HHhccCCCEEEEcchHhhcc
Confidence 34556789999999999885
No 350
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.50 E-value=0.0002 Score=86.99 Aligned_cols=61 Identities=28% Similarity=0.561 Sum_probs=47.7
Q ss_pred CccCCCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHc----------CCceEEEe
Q 002386 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC----------SLRFISVK 910 (929)
Q Consensus 841 ~~w~dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~----------glnfIsVk 910 (929)
..++++.|.+.+.+.+...+..+ .+.+++|+||||||||++|+++++.+ +.+|+.++
T Consensus 151 ~~~~~iiGqs~~~~~l~~~ia~~-------------~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~ 217 (615)
T TIGR02903 151 RAFSEIVGQERAIKALLAKVASP-------------FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVD 217 (615)
T ss_pred CcHHhceeCcHHHHHHHHHHhcC-------------CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEe
Confidence 57889999988877766554321 23569999999999999999998765 45799999
Q ss_pred cccc
Q 002386 911 GPEL 914 (929)
Q Consensus 911 g~EL 914 (929)
|..+
T Consensus 218 ~~~l 221 (615)
T TIGR02903 218 GTTL 221 (615)
T ss_pred chhc
Confidence 8764
No 351
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=97.50 E-value=0.00013 Score=75.61 Aligned_cols=46 Identities=26% Similarity=0.470 Sum_probs=35.5
Q ss_pred ccCCCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHc
Q 002386 842 GWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC 902 (929)
Q Consensus 842 ~w~dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~ 902 (929)
+++||-|++.+|+.|.-... + +.|+||+||||||||++|++++..+
T Consensus 1 Df~dI~GQe~aKrAL~iAAa------------G---~h~lLl~GppGtGKTmlA~~l~~lL 46 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAA------------G---GHHLLLIGPPGTGKTMLARRLPSLL 46 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHH------------C---C--EEEES-CCCTHHHHHHHHHHCS
T ss_pred ChhhhcCcHHHHHHHHHHHc------------C---CCCeEEECCCCCCHHHHHHHHHHhC
Confidence 36789999999998876543 2 3699999999999999999999754
No 352
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.49 E-value=0.00093 Score=66.04 Aligned_cols=30 Identities=37% Similarity=0.552 Sum_probs=25.6
Q ss_pred CCCCCceEEEECCCCcHHHHHHHHHHHHhc
Q 002386 586 HLPLPGHILIHGPPGSGKTSLAKAVAKSLE 615 (929)
Q Consensus 586 ~~~~~~~vLL~GppGtGKTtLaralA~~L~ 615 (929)
.+.++..++|+||+|||||+|.|++|.-..
T Consensus 25 ~v~~Ge~iaitGPSG~GKStllk~va~Lis 54 (223)
T COG4619 25 SVRAGEFIAITGPSGCGKSTLLKIVASLIS 54 (223)
T ss_pred eecCCceEEEeCCCCccHHHHHHHHHhccC
Confidence 355567799999999999999999998654
No 353
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.48 E-value=0.00017 Score=85.23 Aligned_cols=61 Identities=26% Similarity=0.369 Sum_probs=46.4
Q ss_pred cCCCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHcCCceEEEe
Q 002386 843 WDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVK 910 (929)
Q Consensus 843 w~dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~glnfIsVk 910 (929)
-.|--||+.||+.+.|.+.-...... .-..=++|+||||+|||.|++.||+..|..|+.+.
T Consensus 322 d~dHYGLekVKeRIlEyLAV~~l~~~-------~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~s 382 (782)
T COG0466 322 DKDHYGLEKVKERILEYLAVQKLTKK-------LKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRIS 382 (782)
T ss_pred cccccCchhHHHHHHHHHHHHHHhcc-------CCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEe
Confidence 44567999999999998763322111 11123568999999999999999999999999974
No 354
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.48 E-value=7.1e-05 Score=76.59 Aligned_cols=42 Identities=36% Similarity=0.674 Sum_probs=33.6
Q ss_pred CCceeEEecCCCCcHHHHHHHHHHHc---CCceEEEecccccccc
Q 002386 877 LRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKY 918 (929)
Q Consensus 877 ~~sGiLLyGpPGtGKT~LA~alA~e~---glnfIsVkg~ELl~ky 918 (929)
-..|++|+||||||||+||.|+|.++ |....-++.++|++++
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l 90 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDEL 90 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHH
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccc
Confidence 35789999999999999999999765 8888888999988754
No 355
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=97.48 E-value=0.0017 Score=79.72 Aligned_cols=30 Identities=17% Similarity=0.307 Sum_probs=25.6
Q ss_pred CCCCceEEEECCCCcHHHHHHHHHHHHhcc
Q 002386 587 LPLPGHILIHGPPGSGKTSLAKAVAKSLEH 616 (929)
Q Consensus 587 ~~~~~~vLL~GppGtGKTtLaralA~~L~~ 616 (929)
+.++..+.|.||.|+|||||+|.|+..+..
T Consensus 24 i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~p 53 (638)
T PRK10636 24 INPGQKVGLVGKNGCGKSTLLALLKNEISA 53 (638)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 555667999999999999999999997643
No 356
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=0.00015 Score=85.36 Aligned_cols=63 Identities=27% Similarity=0.338 Sum_probs=47.3
Q ss_pred CccCCCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHcCCceEEEe
Q 002386 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVK 910 (929)
Q Consensus 841 ~~w~dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~glnfIsVk 910 (929)
.--+|--||++||+.+.|.+.--.. -+--.+.=+.|+||||.|||.+|+.||+.+|..|+.+.
T Consensus 408 iLdeDHYgm~dVKeRILEfiAV~kL-------rgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfS 470 (906)
T KOG2004|consen 408 ILDEDHYGMEDVKERILEFIAVGKL-------RGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFS 470 (906)
T ss_pred hhcccccchHHHHHHHHHHHHHHhh-------cccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEe
Confidence 3445678999999999998763211 01112333558999999999999999999999999864
No 357
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.47 E-value=0.00017 Score=84.52 Aligned_cols=50 Identities=22% Similarity=0.383 Sum_probs=42.3
Q ss_pred CccCCCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHc
Q 002386 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC 902 (929)
Q Consensus 841 ~~w~dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~ 902 (929)
..|+|+.|.+.+.+.|+..+.. -+.+.++||+||+|+|||++|+++|+..
T Consensus 10 ~~f~dliGQe~vv~~L~~a~~~------------~ri~ha~Lf~Gp~G~GKTT~ArilAk~L 59 (491)
T PRK14964 10 SSFKDLVGQDVLVRILRNAFTL------------NKIPQSILLVGASGVGKTTCARIISLCL 59 (491)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc------------CCCCceEEEECCCCccHHHHHHHHHHHH
Confidence 5799999999999988876542 2456789999999999999999999853
No 358
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=97.47 E-value=0.00018 Score=81.63 Aligned_cols=30 Identities=37% Similarity=0.524 Sum_probs=26.9
Q ss_pred CCCCceEEEECCCCcHHHHHHHHHHHHhcc
Q 002386 587 LPLPGHILIHGPPGSGKTSLAKAVAKSLEH 616 (929)
Q Consensus 587 ~~~~~~vLL~GppGtGKTtLaralA~~L~~ 616 (929)
.++++|+.|||++|+|||+|+-++...+..
T Consensus 59 ~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~ 88 (362)
T PF03969_consen 59 PPPPKGLYLWGPVGRGKTMLMDLFYDSLPI 88 (362)
T ss_pred CCCCceEEEECCCCCchhHHHHHHHHhCCc
Confidence 567889999999999999999999988764
No 359
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.47 E-value=8e-05 Score=83.37 Aligned_cols=64 Identities=23% Similarity=0.385 Sum_probs=49.4
Q ss_pred hhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHc---CCceEEEecccccccc
Q 002386 851 DIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKY 918 (929)
Q Consensus 851 ~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~---glnfIsVkg~ELl~ky 918 (929)
..++.+...++...+|.+.|... ..+++||||||||||+||.|+|.+. |..++-+..++++..+
T Consensus 160 ~~~~~~~~~~~~~~~f~~~f~~~----~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l 226 (329)
T PRK06835 160 SPRKNMEKILEKCKNFIENFDKN----NENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEIL 226 (329)
T ss_pred CHHHHHHHHHHHHHHHHHHHhcc----CCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHH
Confidence 34555555555555677777652 3789999999999999999999986 7788888889988755
No 360
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.46 E-value=0.00011 Score=87.11 Aligned_cols=51 Identities=27% Similarity=0.393 Sum_probs=43.4
Q ss_pred CccCCCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHcC
Q 002386 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACS 903 (929)
Q Consensus 841 ~~w~dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~g 903 (929)
..|+++.|.+.+++.|+..+.- -+.+..+|||||||||||++|+++|+.+.
T Consensus 11 ~~~~dvvGq~~v~~~L~~~i~~------------~~l~ha~Lf~GppGtGKTTlA~~lA~~l~ 61 (504)
T PRK14963 11 ITFDEVVGQEHVKEVLLAALRQ------------GRLGHAYLFSGPRGVGKTTTARLIAMAVN 61 (504)
T ss_pred CCHHHhcChHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 5899999999999999888762 13455679999999999999999998774
No 361
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.46 E-value=0.00087 Score=70.75 Aligned_cols=42 Identities=21% Similarity=0.366 Sum_probs=32.2
Q ss_pred CCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEecc
Q 002386 586 HLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCS 630 (929)
Q Consensus 586 ~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s 630 (929)
|++.+.-++|+|+||+|||+++..+|..+.... ..+.|++..
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g---~~v~yi~~e 56 (218)
T cd01394 15 GVERGTVTQVYGPPGTGKTNIAIQLAVETAGQG---KKVAYIDTE 56 (218)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhcC---CeEEEEECC
Confidence 466667799999999999999999998875332 345666554
No 362
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=97.45 E-value=0.00028 Score=87.40 Aligned_cols=160 Identities=17% Similarity=0.259 Sum_probs=103.6
Q ss_pred EEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccccccCchhhH-------HHHHHHHH---HHHHh-cCC-cEEE
Q 002386 593 ILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPII-------RQALSNFI---SEALD-HAP-SIVI 660 (929)
Q Consensus 593 vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~~~~~~~~-------~~~l~~~f---~~a~~-~~P-sVL~ 660 (929)
+|++||||+|||+.+.++|+.++ ..++..|.+...++....- ...+...+ ..+.. ... -||+
T Consensus 360 ~l~~G~pGigKT~~~h~~~k~~g------~~v~E~Nas~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil 433 (871)
T KOG1968|consen 360 LLLSGPPGIGKTTAAHKAAKELG------FKVVEKNASDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLIL 433 (871)
T ss_pred HHhcCCCCCCchhhHhhhhhhcc------cceeecCccccccccHHHhhhhccccccchhhhhcccccccccccceeEEE
Confidence 69999999999999999999998 7788888887664432110 01111122 00000 112 2999
Q ss_pred EccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCCCcEEEEEecCCCCccccccccCCCcceEeeCCC
Q 002386 661 FDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPA 740 (929)
Q Consensus 661 LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~VivIattn~~~~L~~~L~~~~Rf~~~i~l~~ 740 (929)
+||+|.++. .+ +.....+..+.... .+-+|+++|........... |....++|+.
T Consensus 434 ~devD~~~~--~d----------Rg~v~~l~~l~~ks-----------~~Piv~~cndr~~p~sr~~~--~~~~~l~f~k 488 (871)
T KOG1968|consen 434 MDEVDGMFG--ED----------RGGVSKLSSLCKKS-----------SRPLVCTCNDRNLPKSRALS--RACSDLRFSK 488 (871)
T ss_pred Eeccccccc--hh----------hhhHHHHHHHHHhc-----------cCCeEEEecCCCCccccchh--hhcceeeecC
Confidence 999999873 11 12333344433321 14567777766544332233 5446689999
Q ss_pred CcHHHHHHHHHHHHhhcccccCHHHHHHHHhhcCCCChhhHHHHHHH
Q 002386 741 PAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDR 787 (929)
Q Consensus 741 Pd~~eR~~IL~~~l~~~~~~~~d~~l~~LA~~teG~s~~DL~~Lv~~ 787 (929)
|+.+++..-+...+....+.+++..++++...+ +.||+..+..
T Consensus 489 P~~~~i~~ri~si~~se~~ki~~~~l~~~s~~~----~~DiR~~i~~ 531 (871)
T KOG1968|consen 489 PSSELIRSRIMSICKSEGIKISDDVLEEISKLS----GGDIRQIIMQ 531 (871)
T ss_pred CcHHHHHhhhhhhhcccceecCcHHHHHHHHhc----ccCHHHHHHH
Confidence 999999888888887777889999999999887 4576655443
No 363
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=97.44 E-value=0.00019 Score=84.78 Aligned_cols=52 Identities=27% Similarity=0.274 Sum_probs=43.6
Q ss_pred CccCCCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHcCC
Q 002386 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSL 904 (929)
Q Consensus 841 ~~w~dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~gl 904 (929)
..|+|+.|.+.+.+.|+..+.. -+.+.++||+||||||||++|+++|+.++.
T Consensus 18 ~~f~dliGq~~vv~~L~~ai~~------------~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc 69 (507)
T PRK06645 18 SNFAELQGQEVLVKVLSYTILN------------DRLAGGYLLTGIRGVGKTTSARIIAKAVNC 69 (507)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 5799999999999988876541 245678999999999999999999998754
No 364
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.44 E-value=0.00014 Score=69.37 Aligned_cols=38 Identities=34% Similarity=0.600 Sum_probs=32.3
Q ss_pred CceeEEecCCCCcHHHHHHHHHHHcCCc---eEEEeccccc
Q 002386 878 RSNVLLYGPPGCGKTHIVGAAAAACSLR---FISVKGPELL 915 (929)
Q Consensus 878 ~sGiLLyGpPGtGKT~LA~alA~e~gln---fIsVkg~ELl 915 (929)
+..++|+||||||||++|+++|..++.. ++.+.+....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~ 42 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDIL 42 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEcc
Confidence 4578999999999999999999999876 7877776544
No 365
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.43 E-value=0.00017 Score=86.44 Aligned_cols=51 Identities=24% Similarity=0.455 Sum_probs=43.4
Q ss_pred CccCCCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHcC
Q 002386 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACS 903 (929)
Q Consensus 841 ~~w~dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~g 903 (929)
..|++|.|.+.+++.|+..+.- -+.+..+|||||+|||||++|+++|+...
T Consensus 10 ~~f~eivGq~~i~~~L~~~i~~------------~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~ 60 (584)
T PRK14952 10 ATFAEVVGQEHVTEPLSSALDA------------GRINHAYLFSGPRGCGKTSSARILARSLN 60 (584)
T ss_pred CcHHHhcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 5799999999999999888752 24556689999999999999999998754
No 366
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.43 E-value=0.00014 Score=89.37 Aligned_cols=52 Identities=21% Similarity=0.355 Sum_probs=44.0
Q ss_pred CccCCCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHcCC
Q 002386 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSL 904 (929)
Q Consensus 841 ~~w~dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~gl 904 (929)
..|++|.|.+.+++.|+..+.. -+++..+||+||||||||++|+++|+.++.
T Consensus 13 ~tFddIIGQe~Iv~~LknaI~~------------~rl~HAyLFtGPpGtGKTTLARiLAk~Lnc 64 (944)
T PRK14949 13 ATFEQMVGQSHVLHALTNALTQ------------QRLHHAYLFTGTRGVGKTSLARLFAKGLNC 64 (944)
T ss_pred CCHHHhcCcHHHHHHHHHHHHh------------CCCCeEEEEECCCCCCHHHHHHHHHHhccC
Confidence 5799999999999999887652 145667899999999999999999998765
No 367
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.43 E-value=0.00099 Score=71.11 Aligned_cols=80 Identities=21% Similarity=0.299 Sum_probs=49.1
Q ss_pred CCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccccc----------cC--------------------
Q 002386 586 HLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLS----------LE-------------------- 635 (929)
Q Consensus 586 ~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~----------~~-------------------- 635 (929)
+++.+..++|.|++|||||+++..++..+.... ..+.|++...-. +.
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g---~~~~yi~~e~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~ 96 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQNG---YSVSYVSTQLTTTEFIKQMMSLGYDINKKLISGKLLYIPVYPLL 96 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCC---CcEEEEeCCCCHHHHHHHHHHhCCchHHHhhcCcEEEEEecccc
Confidence 466677899999999999999766555442222 234444432100 00
Q ss_pred -chhhHHHHHHHHHHHHHhcCCcEEEEccccccc
Q 002386 636 -KGPIIRQALSNFISEALDHAPSIVIFDNLDSII 668 (929)
Q Consensus 636 -~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~ 668 (929)
.....+..+..++.......|.++++|++-.+.
T Consensus 97 ~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l 130 (230)
T PRK08533 97 SGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLI 130 (230)
T ss_pred cChHHHHHHHHHHHHHHHhcCCCEEEEECccHHh
Confidence 011123445556666555679999999997765
No 368
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=97.42 E-value=0.0014 Score=78.38 Aligned_cols=29 Identities=28% Similarity=0.335 Sum_probs=24.8
Q ss_pred CCCCceEEEECCCCcHHHHHHHHHHHHhc
Q 002386 587 LPLPGHILIHGPPGSGKTSLAKAVAKSLE 615 (929)
Q Consensus 587 ~~~~~~vLL~GppGtGKTtLaralA~~L~ 615 (929)
+..+..+.|.||+|+|||||+++++..+.
T Consensus 34 i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~ 62 (510)
T PRK15439 34 LHAGEVHALLGGNGAGKSTLMKIIAGIVP 62 (510)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45556799999999999999999998764
No 369
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.41 E-value=0.0011 Score=70.77 Aligned_cols=83 Identities=20% Similarity=0.229 Sum_probs=51.6
Q ss_pred CCCCCceEEEECCCCcHHHHHHHHHHHHhccCc---cceeeEEEEecccccc-C--------------------------
Q 002386 586 HLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHK---DLVAHIVFVCCSRLSL-E-------------------------- 635 (929)
Q Consensus 586 ~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~---~~~~~~~~V~~s~L~~-~-------------------------- 635 (929)
|++.+.-+.|+|+||||||+++..+|....... .....++|+++..-.. .
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~ 94 (235)
T cd01123 15 GIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQIAERFGLDPEEVLDNIYVARAY 94 (235)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHHHHHHhccChHhHhcCEEEEecC
Confidence 466677799999999999999999986543221 1124577777654211 0
Q ss_pred chhhHHHHHHHHHHHHHhc-CCcEEEEccccccc
Q 002386 636 KGPIIRQALSNFISEALDH-APSIVIFDNLDSII 668 (929)
Q Consensus 636 ~~~~~~~~l~~~f~~a~~~-~PsVL~LDEiD~L~ 668 (929)
...+....+..+....... .+.+|+||-+..++
T Consensus 95 ~~~~l~~~l~~l~~~l~~~~~~~liVIDSis~~~ 128 (235)
T cd01123 95 NSDHQLQLLEELEAILIESSRIKLVIVDSVTALF 128 (235)
T ss_pred CHHHHHHHHHHHHHHHhhcCCeeEEEEeCcHHHH
Confidence 0112222233333333445 78899999999876
No 370
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.41 E-value=0.00017 Score=85.80 Aligned_cols=52 Identities=23% Similarity=0.344 Sum_probs=44.8
Q ss_pred CccCCCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHcCC
Q 002386 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSL 904 (929)
Q Consensus 841 ~~w~dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~gl 904 (929)
..|++|.|.+.+++.|...+.. -+++..+||+||+|||||++|+++|+.+..
T Consensus 13 qtFddVIGQe~vv~~L~~al~~------------gRLpHA~LFtGP~GvGKTTLAriLAkaLnC 64 (700)
T PRK12323 13 RDFTTLVGQEHVVRALTHALEQ------------QRLHHAYLFTGTRGVGKTTLSRILAKSLNC 64 (700)
T ss_pred CcHHHHcCcHHHHHHHHHHHHh------------CCCceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 5799999999999999988762 245677899999999999999999998764
No 371
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.41 E-value=0.00021 Score=86.28 Aligned_cols=52 Identities=23% Similarity=0.338 Sum_probs=44.3
Q ss_pred CccCCCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHcCC
Q 002386 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSL 904 (929)
Q Consensus 841 ~~w~dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~gl 904 (929)
..|+++.|.+.+++.|+..+.. -+.+..+||+||+|||||++|+++|+.+..
T Consensus 13 ~~f~eivGQe~i~~~L~~~i~~------------~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c 64 (620)
T PRK14954 13 SKFADITAQEHITHTIQNSLRM------------DRVGHGYIFSGLRGVGKTTAARVFAKAVNC 64 (620)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc------------CCCCeeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5799999999999998887652 256678999999999999999999988754
No 372
>PRK08116 hypothetical protein; Validated
Probab=97.40 E-value=0.0001 Score=80.45 Aligned_cols=42 Identities=33% Similarity=0.487 Sum_probs=36.9
Q ss_pred CceeEEecCCCCcHHHHHHHHHHHc---CCceEEEeccccccccc
Q 002386 878 RSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKYI 919 (929)
Q Consensus 878 ~sGiLLyGpPGtGKT~LA~alA~e~---glnfIsVkg~ELl~kyI 919 (929)
..|++|+|+||||||+||.|+|+++ |.+++-++.+++++++.
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~ 158 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIK 158 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHH
Confidence 3579999999999999999999975 78899999999887653
No 373
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=97.40 E-value=0.00017 Score=86.95 Aligned_cols=52 Identities=27% Similarity=0.385 Sum_probs=44.3
Q ss_pred CccCCCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHcCC
Q 002386 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSL 904 (929)
Q Consensus 841 ~~w~dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~gl 904 (929)
..|++|.|.+.+++.|...+.. -+++..+||+||+|||||++|+++|+.++.
T Consensus 13 ~~f~divGQe~vv~~L~~~l~~------------~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c 64 (647)
T PRK07994 13 QTFAEVVGQEHVLTALANALDL------------GRLHHAYLFSGTRGVGKTTIARLLAKGLNC 64 (647)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHhhhh
Confidence 5799999999999999887752 245667899999999999999999998755
No 374
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.39 E-value=0.00022 Score=84.66 Aligned_cols=51 Identities=22% Similarity=0.346 Sum_probs=42.9
Q ss_pred CccCCCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHcC
Q 002386 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACS 903 (929)
Q Consensus 841 ~~w~dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~g 903 (929)
..|+++.|.+.+.+.|...+.. -+.+..+||+||||||||++|+++|+.+.
T Consensus 13 ~~f~diiGq~~~v~~L~~~i~~------------~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~ 63 (546)
T PRK14957 13 QSFAEVAGQQHALNSLVHALET------------QKVHHAYLFTGTRGVGKTTLGRLLAKCLN 63 (546)
T ss_pred CcHHHhcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5789999999999998887752 14456789999999999999999999664
No 375
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=97.39 E-value=0.0013 Score=77.40 Aligned_cols=139 Identities=21% Similarity=0.287 Sum_probs=74.8
Q ss_pred CCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccc--cccCch-----hhHHHHHHHHHHHHH---hcCC
Q 002386 587 LPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSR--LSLEKG-----PIIRQALSNFISEAL---DHAP 656 (929)
Q Consensus 587 ~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~--L~~~~~-----~~~~~~l~~~f~~a~---~~~P 656 (929)
.+..-+|||+|.||||||-+++.+++.+... +|.+... -.|... ++.++ ++-+.- ....
T Consensus 459 ~R~~INILL~GDPGtsKSqlLqyv~~l~pRg-------~yTSGkGsSavGLTayVtrd~dtkq----lVLesGALVLSD~ 527 (804)
T KOG0478|consen 459 FRGDINILLVGDPGTSKSQLLQYCHRLLPRG-------VYTSGKGSSAVGLTAYVTKDPDTRQ----LVLESGALVLSDN 527 (804)
T ss_pred ccccceEEEecCCCcCHHHHHHHHHHhCCcc-------eeecCCccchhcceeeEEecCccce----eeeecCcEEEcCC
Confidence 3334579999999999999999999876421 1121110 000000 01111 111100 0234
Q ss_pred cEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcc----cccCccCCCcEEEEEecCCCC------------
Q 002386 657 SIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGE----KRKSSCGIGPIAFVASAQSLE------------ 720 (929)
Q Consensus 657 sVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~----~~~~~~~~~~VivIattn~~~------------ 720 (929)
.+-.|||+|.+-. .--..|...|+.-.- ..--+.--.+..|+|++|+.+
T Consensus 528 GiCCIDEFDKM~d---------------StrSvLhEvMEQQTvSIAKAGII~sLNAR~SVLAaANP~~skynp~k~i~eN 592 (804)
T KOG0478|consen 528 GICCIDEFDKMSD---------------STRSVLHEVMEQQTLSIAKAGIIASLNARCSVLAAANPIRSKYNPNKSIIEN 592 (804)
T ss_pred ceEEchhhhhhhH---------------HHHHHHHHHHHHhhhhHhhcceeeeccccceeeeeeccccccCCCCCchhhc
Confidence 5888999999841 222344444543210 000000001457899999644
Q ss_pred -ccccccccCCCcceEe-eCCCCcHHHHHHHHHHH
Q 002386 721 -KIPQSLTSSGRFDFHV-QLPAPAASERKAILEHE 753 (929)
Q Consensus 721 -~L~~~L~~~~Rf~~~i-~l~~Pd~~eR~~IL~~~ 753 (929)
.|+|.|++ ||+.++ -+..||...-+.+..+.
T Consensus 593 I~LpptLLS--RFDLIylllD~~DE~~Dr~La~Hi 625 (804)
T KOG0478|consen 593 INLPPTLLS--RFDLIFLLLDKPDERSDRRLADHI 625 (804)
T ss_pred cCCChhhhh--hhcEEEEEecCcchhHHHHHHHHH
Confidence 37899999 999665 56777776444444443
No 376
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=97.39 E-value=0.00015 Score=87.20 Aligned_cols=51 Identities=27% Similarity=0.395 Sum_probs=44.4
Q ss_pred CccCCCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHcC
Q 002386 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACS 903 (929)
Q Consensus 841 ~~w~dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~g 903 (929)
..|+||.|.+.+++.|+..+.. -+++.++||+||+|||||++|+++|++++
T Consensus 13 ~tFddIIGQe~vv~~L~~ai~~------------~rl~Ha~Lf~GP~GvGKTTlAriLAk~Ln 63 (709)
T PRK08691 13 KTFADLVGQEHVVKALQNALDE------------GRLHHAYLLTGTRGVGKTTIARILAKSLN 63 (709)
T ss_pred CCHHHHcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCcHHHHHHHHHHHhc
Confidence 5899999999999999988762 25667899999999999999999999754
No 377
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.39 E-value=0.00025 Score=83.08 Aligned_cols=50 Identities=22% Similarity=0.317 Sum_probs=42.8
Q ss_pred CccCCCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHc
Q 002386 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC 902 (929)
Q Consensus 841 ~~w~dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~ 902 (929)
..|+||.|.+.+++.|...+.. -+.+..+|||||||||||++|+++|+..
T Consensus 14 ~~~~diiGq~~~v~~L~~~i~~------------~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l 63 (451)
T PRK06305 14 QTFSEILGQDAVVAVLKNALRF------------NRAAHAYLFSGIRGTGKTTLARIFAKAL 63 (451)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc------------CCCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 5899999999999999887752 1345679999999999999999999875
No 378
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=97.38 E-value=0.00021 Score=86.16 Aligned_cols=52 Identities=23% Similarity=0.307 Sum_probs=44.1
Q ss_pred CccCCCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHcCC
Q 002386 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSL 904 (929)
Q Consensus 841 ~~w~dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~gl 904 (929)
..|++|.|.+.+++.|+..+.. -+++..+||+||+|||||++|+++|+.++.
T Consensus 13 qtFdEVIGQe~Vv~~L~~aL~~------------gRL~HAyLFtGPpGvGKTTlAriLAKaLnC 64 (830)
T PRK07003 13 KDFASLVGQEHVVRALTHALDG------------GRLHHAYLFTGTRGVGKTTLSRIFAKALNC 64 (830)
T ss_pred CcHHHHcCcHHHHHHHHHHHhc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 5799999999999999887752 245667899999999999999999997753
No 379
>KOG3595 consensus Dyneins, heavy chain [Cytoskeleton]
Probab=97.37 E-value=0.0011 Score=87.81 Aligned_cols=150 Identities=19% Similarity=0.333 Sum_probs=82.3
Q ss_pred ceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccccccCchhhHHHHHHHHHHHH---HhcCC----cEEEEcc
Q 002386 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEA---LDHAP----SIVIFDN 663 (929)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~~~~~~~~~~~l~~~f~~a---~~~~P----sVL~LDE 663 (929)
..++++||+|+|||.++........... +..++.+...+ .......+...++.- .+..| .++|+||
T Consensus 128 k~~~~~g~~g~gk~~~~~~~~~~~~~~~-----~~~~~fs~~ts--~~~~q~~~~~~~~k~~~~~~~~~~~~~~~~f~dd 200 (1395)
T KOG3595|consen 128 KPVLLVGPTGTGKTVLVLSELRSLQDRE-----VYLLNFSSVTS--SELLQEIIESKLDKRRSGNYGPPLGKKLVLFVDD 200 (1395)
T ss_pred CeEEEEcCCCCCeeeehHHHHHhcccch-----heEEeeeeecc--HHHHHHHHHHHHHHhcccCCCCCCCceeEEEEec
Confidence 5699999999999999988877653211 11122222211 111112222211111 11222 3899999
Q ss_pred ccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCCCcEEEEEecCCCC----ccccccccCCCcceEeeCC
Q 002386 664 LDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLE----KIPQSLTSSGRFDFHVQLP 739 (929)
Q Consensus 664 iD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~VivIattn~~~----~L~~~L~~~~Rf~~~i~l~ 739 (929)
++.-. .+..+.+.. ..+..++.+...-+...........++.++++++.+. ++++.+.| .|. .+.+.
T Consensus 201 inmp~---~~~yg~q~~---~~~lrq~~e~~g~~~~~~~~~~~i~~i~~~~a~~~~~~gr~~i~~r~~r--~f~-~~~~~ 271 (1395)
T KOG3595|consen 201 INMPA---LDKYGDQPP---IELLRQMLEHGGFYDRKKSEWVEIENVQLVGAMNPPGGGRNDITERFLR--HFL-IVSLN 271 (1395)
T ss_pred cCCch---hhhcCCccH---HHHHHHHHHhceeecccccceeEEeeeEEEeecCCCCCccCcccHHHHH--Hee-eEeeC
Confidence 98765 334443322 1233333222211221112334445788999988633 34555554 444 67899
Q ss_pred CCcHHHHHHHHHHHHhh
Q 002386 740 APAASERKAILEHEIQR 756 (929)
Q Consensus 740 ~Pd~~eR~~IL~~~l~~ 756 (929)
.|+.+...+|+..++..
T Consensus 272 ~~~~~sl~~if~~~~~~ 288 (1395)
T KOG3595|consen 272 YPSQESLTQIFNTILTG 288 (1395)
T ss_pred CCChhhHHHHHHHHHhc
Confidence 99999999999987764
No 380
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=97.37 E-value=0.00024 Score=75.28 Aligned_cols=58 Identities=28% Similarity=0.418 Sum_probs=43.0
Q ss_pred CCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHc---CCceEEEeccccccc
Q 002386 847 GGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNK 917 (929)
Q Consensus 847 gGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~---glnfIsVkg~ELl~k 917 (929)
++-..+.+.++..+. ...+.+++||||||||||++|++++.++ +.+++.+++.++..+
T Consensus 20 ~~~~~~~~~l~~~~~-------------~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~~ 80 (226)
T TIGR03420 20 GGNAELLAALRQLAA-------------GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQA 80 (226)
T ss_pred CCcHHHHHHHHHHHh-------------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHHh
Confidence 445556666665432 1235689999999999999999999887 567888888777643
No 381
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=97.36 E-value=0.00019 Score=88.15 Aligned_cols=59 Identities=25% Similarity=0.447 Sum_probs=45.6
Q ss_pred CccCCCCCchhhHH---HHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHcCCceEEEecc
Q 002386 841 SGWDDVGGLTDIQN---AIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGP 912 (929)
Q Consensus 841 ~~w~dIgGL~~vk~---~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~glnfIsVkg~ 912 (929)
..++++.|.+.+.. .|+..++- ....++|||||||||||++|+++|+.++.+|+.+++.
T Consensus 25 ~tldd~vGQe~ii~~~~~L~~~i~~-------------~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~ 86 (725)
T PRK13341 25 RTLEEFVGQDHILGEGRLLRRAIKA-------------DRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAV 86 (725)
T ss_pred CcHHHhcCcHHHhhhhHHHHHHHhc-------------CCCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhh
Confidence 46778888887763 45555431 1124789999999999999999999999999988765
No 382
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=97.36 E-value=0.00012 Score=77.73 Aligned_cols=73 Identities=26% Similarity=0.355 Sum_probs=54.5
Q ss_pred CCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHcC--CceEEEecccccccccChh
Q 002386 845 DVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACS--LRFISVKGPELLNKYIGAS 922 (929)
Q Consensus 845 dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~g--lnfIsVkg~ELl~kyIG~S 922 (929)
.+.|++.+++.---.+++- +. .--.++.+||.||||||||.||-++|+|+| .+|...-|+|+++--|--+
T Consensus 39 g~vGQ~~AReAagiivdli-k~-------KkmaGravLlaGppgtGKTAlAlaisqELG~kvPFcpmvgSEvyS~EvKKT 110 (456)
T KOG1942|consen 39 GFVGQENAREAAGIIVDLI-KS-------KKMAGRAVLLAGPPGTGKTALALAISQELGPKVPFCPMVGSEVYSNEVKKT 110 (456)
T ss_pred ccccchhhhhhhhHHHHHH-Hh-------hhccCcEEEEecCCCCchhHHHHHHHHHhCCCCCcccccchhhhhhhhhHH
Confidence 3567777776544443321 10 111246899999999999999999999995 6899999999999988888
Q ss_pred hHH
Q 002386 923 EQA 925 (929)
Q Consensus 923 Eq~ 925 (929)
|--
T Consensus 111 EvL 113 (456)
T KOG1942|consen 111 EVL 113 (456)
T ss_pred HHH
Confidence 853
No 383
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.35 E-value=0.00021 Score=84.55 Aligned_cols=70 Identities=21% Similarity=0.423 Sum_probs=47.1
Q ss_pred ccccccccccccccccCCCCCccCCCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHH
Q 002386 821 HEFLPVAMRDITKTSAEGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAA 900 (929)
Q Consensus 821 ~~~~P~slr~v~l~~~~~~~~~w~dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~ 900 (929)
+.+.|..+.++..++-. +++|+..|.+.+. +.....=+||+||||||||++++++|+
T Consensus 11 ~ky~P~~~~eLavhkkK-----------v~eV~~wl~~~~~------------~~~~~~iLlLtGP~G~GKtttv~~La~ 67 (519)
T PF03215_consen 11 EKYAPKTLDELAVHKKK-----------VEEVRSWLEEMFS------------GSSPKRILLLTGPSGCGKTTTVKVLAK 67 (519)
T ss_pred hhcCCCCHHHhhccHHH-----------HHHHHHHHHHHhc------------cCCCcceEEEECCCCCCHHHHHHHHHH
Confidence 34556666555554432 4677777766432 111222466899999999999999999
Q ss_pred HcCCceEEEeccc
Q 002386 901 ACSLRFISVKGPE 913 (929)
Q Consensus 901 e~glnfIsVkg~E 913 (929)
++|...+.-..|-
T Consensus 68 elg~~v~Ew~np~ 80 (519)
T PF03215_consen 68 ELGFEVQEWINPV 80 (519)
T ss_pred HhCCeeEEecCCC
Confidence 9999888755443
No 384
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.34 E-value=0.00091 Score=67.38 Aligned_cols=77 Identities=17% Similarity=0.188 Sum_probs=46.9
Q ss_pred CCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccccccCc--------h-----hhHHHHHHHHHHHHH
Q 002386 586 HLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEK--------G-----PIIRQALSNFISEAL 652 (929)
Q Consensus 586 ~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~~~~--------~-----~~~~~~l~~~f~~a~ 652 (929)
.+.++..+.|.||+|+|||||++.++..+....+ -+.++...+.... . -...+.-+-.+..|.
T Consensus 22 ~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G----~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral 97 (163)
T cd03216 22 SVRRGEVHALLGENGAGKSTLMKILSGLYKPDSG----EILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARAL 97 (163)
T ss_pred EEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCe----EEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHH
Confidence 3566678999999999999999999987643221 2222222211100 0 000112223456667
Q ss_pred hcCCcEEEEccccc
Q 002386 653 DHAPSIVIFDNLDS 666 (929)
Q Consensus 653 ~~~PsVL~LDEiD~ 666 (929)
...|.++++||-..
T Consensus 98 ~~~p~illlDEP~~ 111 (163)
T cd03216 98 ARNARLLILDEPTA 111 (163)
T ss_pred hcCCCEEEEECCCc
Confidence 78999999999754
No 385
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.33 E-value=0.0017 Score=68.78 Aligned_cols=84 Identities=18% Similarity=0.207 Sum_probs=51.6
Q ss_pred CCCCCceEEEECCCCcHHHHHHHHHHHHhccCc---cceeeEEEEeccccccC---------------------------
Q 002386 586 HLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHK---DLVAHIVFVCCSRLSLE--------------------------- 635 (929)
Q Consensus 586 ~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~---~~~~~~~~V~~s~L~~~--------------------------- 635 (929)
|++.+.-+.|+|+||+|||+++..+|....... .....++|+++..-...
T Consensus 15 G~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~ 94 (226)
T cd01393 15 GIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLVQLAVRFGLDPEEVLDNIYVARPY 94 (226)
T ss_pred CCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHHHHHHHhccchhhhhccEEEEeCC
Confidence 466677799999999999999999987753221 01144567766542110
Q ss_pred chhhHHHHHHHHHHHHHhcCCcEEEEcccccccc
Q 002386 636 KGPIIRQALSNFISEALDHAPSIVIFDNLDSIIS 669 (929)
Q Consensus 636 ~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~ 669 (929)
...+....+..+........+.+|+||-+..++.
T Consensus 95 ~~~~~~~~l~~~~~~~~~~~~~lvVIDsis~l~~ 128 (226)
T cd01393 95 NGEQQLEIVEELERIMSSGRVDLVVVDSVAALFR 128 (226)
T ss_pred CHHHHHHHHHHHHHHhhcCCeeEEEEcCcchhhh
Confidence 1112222233332222345788999999988874
No 386
>PRK09354 recA recombinase A; Provisional
Probab=97.33 E-value=0.0014 Score=73.55 Aligned_cols=81 Identities=21% Similarity=0.244 Sum_probs=53.0
Q ss_pred CCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEecccc----------------ccCchhhHHHHHHHHHH
Q 002386 586 HLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRL----------------SLEKGPIIRQALSNFIS 649 (929)
Q Consensus 586 ~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L----------------~~~~~~~~~~~l~~~f~ 649 (929)
|+|.++-++|+||+|||||+|+-.++....... ..++|+++..- .-......++.+..+-.
T Consensus 56 Gip~G~IteI~G~~GsGKTtLal~~~~~~~~~G---~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~ 132 (349)
T PRK09354 56 GLPRGRIVEIYGPESSGKTTLALHAIAEAQKAG---GTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADT 132 (349)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcC---CcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHH
Confidence 577777899999999999999998876654332 45667766441 11111223333333333
Q ss_pred HHHhcCCcEEEEcccccccc
Q 002386 650 EALDHAPSIVIFDNLDSIIS 669 (929)
Q Consensus 650 ~a~~~~PsVL~LDEiD~L~~ 669 (929)
......+.+|++|-+-.+++
T Consensus 133 li~s~~~~lIVIDSvaaL~~ 152 (349)
T PRK09354 133 LVRSGAVDLIVVDSVAALVP 152 (349)
T ss_pred HhhcCCCCEEEEeChhhhcc
Confidence 34456789999999998875
No 387
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.31 E-value=0.00035 Score=72.80 Aligned_cols=72 Identities=22% Similarity=0.424 Sum_probs=44.3
Q ss_pred ceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEE-eccccc---------cCchhhHHHHHHHHHHHHHhcCCcEEE
Q 002386 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFV-CCSRLS---------LEKGPIIRQALSNFISEALDHAPSIVI 660 (929)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V-~~s~L~---------~~~~~~~~~~l~~~f~~a~~~~PsVL~ 660 (929)
+-++|+||+||||||++++++..+..... ..++.+ +..++. ....+.-...+.+.+..+....|.+++
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~~~--~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~~pd~ii 79 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKNKT--HHILTIEDPIEFVHESKRSLINQREVGLDTLSFENALKAALRQDPDVIL 79 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhcCC--cEEEEEcCCccccccCccceeeecccCCCccCHHHHHHHHhcCCcCEEE
Confidence 45899999999999999999998864321 111111 111111 001111122355666677777899999
Q ss_pred Eccc
Q 002386 661 FDNL 664 (929)
Q Consensus 661 LDEi 664 (929)
+||+
T Consensus 80 ~gEi 83 (198)
T cd01131 80 VGEM 83 (198)
T ss_pred EcCC
Confidence 9997
No 388
>PRK08181 transposase; Validated
Probab=97.31 E-value=0.00013 Score=79.34 Aligned_cols=41 Identities=37% Similarity=0.702 Sum_probs=35.3
Q ss_pred CceeEEecCCCCcHHHHHHHHHHHc---CCceEEEecccccccc
Q 002386 878 RSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKY 918 (929)
Q Consensus 878 ~sGiLLyGpPGtGKT~LA~alA~e~---glnfIsVkg~ELl~ky 918 (929)
+.+++|+||||||||+||.|+|.++ |..++-+..++|+..+
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l 149 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKL 149 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHH
Confidence 4689999999999999999999654 7778888889988865
No 389
>PLN03073 ABC transporter F family; Provisional
Probab=97.31 E-value=0.0028 Score=78.43 Aligned_cols=27 Identities=30% Similarity=0.443 Sum_probs=23.6
Q ss_pred CCCCceEEEECCCCcHHHHHHHHHHHH
Q 002386 587 LPLPGHILIHGPPGSGKTSLAKAVAKS 613 (929)
Q Consensus 587 ~~~~~~vLL~GppGtGKTtLaralA~~ 613 (929)
+..+..+-|.|+.|+|||||+|+++..
T Consensus 200 i~~Ge~~gLvG~NGsGKSTLLr~l~g~ 226 (718)
T PLN03073 200 LAFGRHYGLVGRNGTGKTTFLRYMAMH 226 (718)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 555667999999999999999999964
No 390
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.29 E-value=0.0019 Score=61.52 Aligned_cols=94 Identities=19% Similarity=0.220 Sum_probs=53.8
Q ss_pred ccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceee-EEEEeccccc
Q 002386 555 SLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAH-IVFVCCSRLS 633 (929)
Q Consensus 555 ~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~-~~~V~~s~L~ 633 (929)
.|.|+.-+.+.+.+.+...+... .-..|--+-|+|++|||||.+++.||+.+-........ ..++....+.
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~--------~p~KpLVlSfHG~tGtGKn~v~~liA~~ly~~G~~S~~V~~f~~~~hFP 97 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANP--------NPRKPLVLSFHGWTGTGKNFVSRLIAEHLYKSGMKSPFVHQFIATHHFP 97 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCC--------CCCCCEEEEeecCCCCcHHHHHHHHHHHHHhcccCCCceeeecccccCC
Confidence 45577778888888776433211 11222335599999999999999999997544221111 1222222332
Q ss_pred -cCchhhHHHHHHHHHHHHHhcCC
Q 002386 634 -LEKGPIIRQALSNFISEALDHAP 656 (929)
Q Consensus 634 -~~~~~~~~~~l~~~f~~a~~~~P 656 (929)
...+..-+..++.++......-|
T Consensus 98 ~~~~v~~Yk~~L~~~I~~~v~~C~ 121 (127)
T PF06309_consen 98 HNSNVDEYKEQLKSWIRGNVSRCP 121 (127)
T ss_pred CchHHHHHHHHHHHHHHHHHHhCC
Confidence 33444455566666665544433
No 391
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=97.29 E-value=0.00042 Score=78.78 Aligned_cols=50 Identities=34% Similarity=0.440 Sum_probs=42.4
Q ss_pred CccCCCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHc
Q 002386 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC 902 (929)
Q Consensus 841 ~~w~dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~ 902 (929)
..|+++.|.+.+++.|.+.+.. -+.+..+|||||||+|||++|+++|+.+
T Consensus 11 ~~~~~iig~~~~~~~l~~~~~~------------~~~~~~~Ll~G~~G~GKt~~a~~la~~l 60 (355)
T TIGR02397 11 QTFEDVIGQEHIVQTLKNAIKN------------GRIAHAYLFSGPRGTGKTSIARIFAKAL 60 (355)
T ss_pred CcHhhccCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 5899999999999999887642 1345678999999999999999999885
No 392
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.29 E-value=0.00035 Score=84.30 Aligned_cols=51 Identities=24% Similarity=0.382 Sum_probs=43.9
Q ss_pred CccCCCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHcC
Q 002386 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACS 903 (929)
Q Consensus 841 ~~w~dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~g 903 (929)
..|++|.|.+.+++.|...+.. -+.+..+|||||+|||||++|+++|+.+.
T Consensus 13 ~~f~~iiGq~~v~~~L~~~i~~------------~~~~hayLf~Gp~G~GKtt~A~~lak~l~ 63 (576)
T PRK14965 13 QTFSDLTGQEHVSRTLQNAIDT------------GRVAHAFLFTGARGVGKTSTARILAKALN 63 (576)
T ss_pred CCHHHccCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHhhc
Confidence 5899999999999999887752 24567789999999999999999998864
No 393
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.28 E-value=0.00017 Score=77.99 Aligned_cols=42 Identities=36% Similarity=0.659 Sum_probs=37.1
Q ss_pred CCceeEEecCCCCcHHHHHHHHHHHc---CCceEEEecccccccc
Q 002386 877 LRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKY 918 (929)
Q Consensus 877 ~~sGiLLyGpPGtGKT~LA~alA~e~---glnfIsVkg~ELl~ky 918 (929)
.+.|++||||||+|||+||.|+|.++ |...+-+..||++++.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~L 148 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKL 148 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHH
Confidence 46799999999999999999999876 7888889999998754
No 394
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=97.28 E-value=0.00042 Score=78.07 Aligned_cols=136 Identities=25% Similarity=0.258 Sum_probs=71.6
Q ss_pred CCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccc-----c---------ccCchhhHHHHHHHHHHHHHhc
Q 002386 589 LPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSR-----L---------SLEKGPIIRQALSNFISEALDH 654 (929)
Q Consensus 589 ~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~-----L---------~~~~~~~~~~~l~~~f~~a~~~ 654 (929)
..-|+||.|.||+|||.|++.+++... ..++++... | .+++.-+.. .+-. .
T Consensus 56 ~~ihiLlvGdpg~gKS~ll~~~~~~~p-------r~v~~~g~~~s~~gLta~~~~d~~~~~~~leaG-----alvl---a 120 (331)
T PF00493_consen 56 GNIHILLVGDPGTGKSQLLKYVAKLAP-------RSVYTSGKGSSAAGLTASVSRDPVTGEWVLEAG-----ALVL---A 120 (331)
T ss_dssp -S--EEEECSCHHCHHHHHHCCCCT-S-------SEEEEECCGSTCCCCCEEECCCGGTSSECEEE------HHHH---C
T ss_pred cccceeeccchhhhHHHHHHHHHhhCC-------ceEEECCCCcccCCccceeccccccceeEEeCC-----chhc---c
Confidence 345899999999999999998865432 223333222 1 111110100 1111 3
Q ss_pred CCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccc----CccCCCcEEEEEecCCCC----------
Q 002386 655 APSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRK----SSCGIGPIAFVASAQSLE---------- 720 (929)
Q Consensus 655 ~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~----~~~~~~~VivIattn~~~---------- 720 (929)
...|++|||+|.+-. .....|...|+.-.-.-. ...-..+..|+|++|+..
T Consensus 121 d~GiccIDe~dk~~~---------------~~~~~l~eaMEqq~isi~kagi~~~l~ar~svlaa~NP~~g~~~~~~~~~ 185 (331)
T PF00493_consen 121 DGGICCIDEFDKMKE---------------DDRDALHEAMEQQTISIAKAGIVTTLNARCSVLAAANPKFGRYDPNKSLS 185 (331)
T ss_dssp TTSEEEECTTTT--C---------------HHHHHHHHHHHCSCEEECTSSSEEEEE---EEEEEE--TT--S-TTS-CG
T ss_pred cCceeeecccccccc---------------hHHHHHHHHHHcCeeccchhhhcccccchhhhHHHHhhhhhhcchhhhhH
Confidence 456999999999841 345667777775321100 000112568899999865
Q ss_pred ---ccccccccCCCcceEeeC-CCCcHHHHHHHHHHHHhh
Q 002386 721 ---KIPQSLTSSGRFDFHVQL-PAPAASERKAILEHEIQR 756 (929)
Q Consensus 721 ---~L~~~L~~~~Rf~~~i~l-~~Pd~~eR~~IL~~~l~~ 756 (929)
.+++.|.+ |||..+.+ ..|+.+.-..+.++.+..
T Consensus 186 ~ni~l~~~LLS--RFDLif~l~D~~d~~~D~~la~~il~~ 223 (331)
T PF00493_consen 186 ENINLPPPLLS--RFDLIFLLRDKPDEEEDERLAEHILDS 223 (331)
T ss_dssp CCT-S-CCCHC--C-SEEECC--TTT-HHHHHHHHHHHTT
T ss_pred HhcccchhhHh--hcCEEEEeccccccccccccceEEEec
Confidence 36788888 99988765 666766666666665553
No 395
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.27 E-value=0.002 Score=69.17 Aligned_cols=29 Identities=24% Similarity=0.460 Sum_probs=24.8
Q ss_pred CCCCCceEEEECCCCcHHHHHHHHHHHHh
Q 002386 586 HLPLPGHILIHGPPGSGKTSLAKAVAKSL 614 (929)
Q Consensus 586 ~~~~~~~vLL~GppGtGKTtLaralA~~L 614 (929)
|++++..+||+|+||||||+++..++.+.
T Consensus 17 G~~~gs~~lI~G~pGsGKT~la~~~l~~~ 45 (237)
T TIGR03877 17 GIPERNVVLLSGGPGTGKSIFSQQFLWNG 45 (237)
T ss_pred CCcCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57888889999999999999998776553
No 396
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.27 E-value=0.002 Score=65.90 Aligned_cols=24 Identities=33% Similarity=0.452 Sum_probs=20.9
Q ss_pred EEEECCCCcHHHHHHHHHHHHhcc
Q 002386 593 ILIHGPPGSGKTSLAKAVAKSLEH 616 (929)
Q Consensus 593 vLL~GppGtGKTtLaralA~~L~~ 616 (929)
+|++||||||||+++..++.....
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~ 25 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLA 25 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH
Confidence 799999999999999988876643
No 397
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.27 E-value=0.00027 Score=84.31 Aligned_cols=52 Identities=23% Similarity=0.378 Sum_probs=44.1
Q ss_pred CccCCCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHcCC
Q 002386 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSL 904 (929)
Q Consensus 841 ~~w~dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~gl 904 (929)
..|+++.|.+.+++.|...+.. -+++..+||+||||||||++|+++|+....
T Consensus 13 ~~f~divGq~~v~~~L~~~i~~------------~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 64 (527)
T PRK14969 13 KSFSELVGQEHVVRALTNALEQ------------QRLHHAYLFTGTRGVGKTTLARILAKSLNC 64 (527)
T ss_pred CcHHHhcCcHHHHHHHHHHHHc------------CCCCEEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 5799999999999999887752 244567899999999999999999998754
No 398
>PRK12377 putative replication protein; Provisional
Probab=97.26 E-value=0.00018 Score=77.39 Aligned_cols=41 Identities=27% Similarity=0.521 Sum_probs=35.1
Q ss_pred CceeEEecCCCCcHHHHHHHHHHHc---CCceEEEecccccccc
Q 002386 878 RSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKY 918 (929)
Q Consensus 878 ~sGiLLyGpPGtGKT~LA~alA~e~---glnfIsVkg~ELl~ky 918 (929)
..+++|+||||||||+||.|+|.+. |..++.+..++++..+
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l 144 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRL 144 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHH
Confidence 3689999999999999999999877 6778888888888744
No 399
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.26 E-value=0.0016 Score=68.90 Aligned_cols=29 Identities=28% Similarity=0.458 Sum_probs=24.9
Q ss_pred CCCCceEEEECCCCcHHHHHHHHHHHHhc
Q 002386 587 LPLPGHILIHGPPGSGKTSLAKAVAKSLE 615 (929)
Q Consensus 587 ~~~~~~vLL~GppGtGKTtLaralA~~L~ 615 (929)
+..+.-+-|.||+|||||||.+.+|.-..
T Consensus 26 v~~GEfvsilGpSGcGKSTLLriiAGL~~ 54 (248)
T COG1116 26 VEKGEFVAILGPSGCGKSTLLRLIAGLEK 54 (248)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45556799999999999999999998665
No 400
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.26 E-value=0.00025 Score=79.14 Aligned_cols=45 Identities=36% Similarity=0.577 Sum_probs=41.8
Q ss_pred CceeEEecCCCCcHHHHHHHHHHHcCCceEEEecccccc-cccChh
Q 002386 878 RSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLN-KYIGAS 922 (929)
Q Consensus 878 ~sGiLLyGpPGtGKT~LA~alA~e~glnfIsVkg~ELl~-kyIG~S 922 (929)
.+++||.||+|+|||+||+-+|+-+..+|...++..|-. .|||+-
T Consensus 226 KSNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeD 271 (564)
T KOG0745|consen 226 KSNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGED 271 (564)
T ss_pred cccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhccccccc
Confidence 479999999999999999999999999999999998875 799974
No 401
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.24 E-value=0.0004 Score=83.30 Aligned_cols=51 Identities=24% Similarity=0.372 Sum_probs=43.2
Q ss_pred CccCCCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHcC
Q 002386 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACS 903 (929)
Q Consensus 841 ~~w~dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~g 903 (929)
..|++|.|.+.+++.|+..+.- -+.+..+|||||||+|||++|+++|+...
T Consensus 13 ~~f~diiGqe~iv~~L~~~i~~------------~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~ 63 (563)
T PRK06647 13 RDFNSLEGQDFVVETLKHSIES------------NKIANAYIFSGPRGVGKTSSARAFARCLN 63 (563)
T ss_pred CCHHHccCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHhhc
Confidence 5899999999999999887752 13456799999999999999999999764
No 402
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.24 E-value=0.0023 Score=68.42 Aligned_cols=80 Identities=20% Similarity=0.322 Sum_probs=50.8
Q ss_pred CCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccccc----------c---------------------
Q 002386 586 HLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLS----------L--------------------- 634 (929)
Q Consensus 586 ~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~----------~--------------------- 634 (929)
|+|.+..++++|+||+|||+++..++....... ..+.|++..+-. +
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g---~~~~y~~~e~~~~~~~~~~~~~g~~~~~~~~~g~l~i~~~~~~~ 97 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALKQG---KKVYVITTENTSKSYLKQMESVKIDISDFFLWGYLRIFPLNTEG 97 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHhCC---CEEEEEEcCCCHHHHHHHHHHCCCChhHHHhCCCceEEeccccc
Confidence 578888899999999999999999976642222 344455442210 0
Q ss_pred --CchhhHHHHHHHHHHHHHhcCCcEEEEccccccc
Q 002386 635 --EKGPIIRQALSNFISEALDHAPSIVIFDNLDSII 668 (929)
Q Consensus 635 --~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~ 668 (929)
.........+..+.+......|.+++||++..+.
T Consensus 98 ~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~ 133 (234)
T PRK06067 98 FEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFA 133 (234)
T ss_pred cccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHH
Confidence 0001123444444444555688999999998664
No 403
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.24 E-value=0.00044 Score=83.11 Aligned_cols=51 Identities=29% Similarity=0.432 Sum_probs=43.0
Q ss_pred CccCCCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHcC
Q 002386 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACS 903 (929)
Q Consensus 841 ~~w~dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~g 903 (929)
..|+++.|.+.+.+.|+..+.- -+.+..+|||||+|||||++|+++|+...
T Consensus 13 ~~f~~viGq~~v~~~L~~~i~~------------~~~~hayLf~Gp~GtGKTt~Ak~lAkal~ 63 (559)
T PRK05563 13 QTFEDVVGQEHITKTLKNAIKQ------------GKISHAYLFSGPRGTGKTSAAKIFAKAVN 63 (559)
T ss_pred CcHHhccCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 5799999999999999887652 23456789999999999999999998753
No 404
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.24 E-value=0.00029 Score=85.60 Aligned_cols=51 Identities=29% Similarity=0.476 Sum_probs=43.6
Q ss_pred CccCCCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHcC
Q 002386 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACS 903 (929)
Q Consensus 841 ~~w~dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~g 903 (929)
..|++|.|.+.+.+.|+..+.- -+.+..+|||||+|||||++|+++|+...
T Consensus 15 ~~f~dIiGQe~~v~~L~~aI~~------------~rl~HAYLF~GP~GtGKTt~AriLAk~Ln 65 (725)
T PRK07133 15 KTFDDIVGQDHIVQTLKNIIKS------------NKISHAYLFSGPRGTGKTSVAKIFANALN 65 (725)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCcHHHHHHHHHHHhc
Confidence 5899999999999999888762 14567789999999999999999998754
No 405
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.23 E-value=0.0011 Score=71.37 Aligned_cols=29 Identities=31% Similarity=0.509 Sum_probs=24.9
Q ss_pred CCceEEEECCCCcHHHHHHHHHHHHhccC
Q 002386 589 LPGHILIHGPPGSGKTSLAKAVAKSLEHH 617 (929)
Q Consensus 589 ~~~~vLL~GppGtGKTtLaralA~~L~~~ 617 (929)
.+..++|.||+|+||||+++.+++.+...
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~ 43 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKN 43 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccc
Confidence 34569999999999999999999987644
No 406
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.22 E-value=0.00023 Score=79.13 Aligned_cols=43 Identities=23% Similarity=0.344 Sum_probs=37.0
Q ss_pred CCceeEEecCCCCcHHHHHHHHHHHc---CCceEEEeccccccccc
Q 002386 877 LRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKYI 919 (929)
Q Consensus 877 ~~sGiLLyGpPGtGKT~LA~alA~e~---glnfIsVkg~ELl~kyI 919 (929)
...|++||||+|||||+||.|+|.++ |....-+..|+++..+-
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk 200 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELK 200 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHH
Confidence 35799999999999999999999988 77888888888877653
No 407
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.22 E-value=0.00022 Score=76.52 Aligned_cols=41 Identities=17% Similarity=0.412 Sum_probs=36.0
Q ss_pred ceeEEecCCCCcHHHHHHHHHHHc---CCceEEEeccccccccc
Q 002386 879 SNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKYI 919 (929)
Q Consensus 879 sGiLLyGpPGtGKT~LA~alA~e~---glnfIsVkg~ELl~kyI 919 (929)
.|++|+|+||||||+||.|+|.++ |..++.+..+++++.+-
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~ 143 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMK 143 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHH
Confidence 489999999999999999999887 77888888999987544
No 408
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=97.21 E-value=0.00035 Score=83.31 Aligned_cols=50 Identities=26% Similarity=0.325 Sum_probs=42.1
Q ss_pred CccCCCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHc
Q 002386 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC 902 (929)
Q Consensus 841 ~~w~dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~ 902 (929)
..|+++.|.+.+++.|...+.- -+.+..+||+||+|||||++|+++|+..
T Consensus 13 ~~F~dIIGQe~iv~~L~~aI~~------------~rl~hA~Lf~GP~GvGKTTlA~~lAk~L 62 (605)
T PRK05896 13 HNFKQIIGQELIKKILVNAILN------------NKLTHAYIFSGPRGIGKTSIAKIFAKAI 62 (605)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999988876641 2445679999999999999999999875
No 409
>PRK06921 hypothetical protein; Provisional
Probab=97.21 E-value=0.00029 Score=76.77 Aligned_cols=53 Identities=25% Similarity=0.372 Sum_probs=38.3
Q ss_pred CchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHc----CCceEEEeccccccc
Q 002386 865 KFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC----SLRFISVKGPELLNK 917 (929)
Q Consensus 865 k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~----glnfIsVkg~ELl~k 917 (929)
+|...|....-....+++|+|+||||||+||.|+|.++ |..++-+...+++..
T Consensus 104 ~~~~~f~~~~~~~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~ 160 (266)
T PRK06921 104 EYVKDFEKIQESRKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGD 160 (266)
T ss_pred HHHHHHHHhcccCCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHH
Confidence 34455554333345789999999999999999999875 566667776666553
No 410
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.20 E-value=0.00043 Score=86.14 Aligned_cols=51 Identities=24% Similarity=0.439 Sum_probs=43.6
Q ss_pred CccCCCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHcC
Q 002386 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACS 903 (929)
Q Consensus 841 ~~w~dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~g 903 (929)
..|++|.|.+.+++.|+..+.. -+....+||+||+|||||++|+++|+.+.
T Consensus 12 ~~f~eiiGqe~v~~~L~~~i~~------------~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~ 62 (824)
T PRK07764 12 ATFAEVIGQEHVTEPLSTALDS------------GRINHAYLFSGPRGCGKTSSARILARSLN 62 (824)
T ss_pred CCHHHhcCcHHHHHHHHHHHHh------------CCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 5899999999999999887752 24556789999999999999999998874
No 411
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=97.20 E-value=0.00053 Score=76.59 Aligned_cols=60 Identities=25% Similarity=0.435 Sum_probs=46.8
Q ss_pred CccCCCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHc-----CCceEEEeccc
Q 002386 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC-----SLRFISVKGPE 913 (929)
Q Consensus 841 ~~w~dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~-----glnfIsVkg~E 913 (929)
..|+++.|.+++.+.|...+... + ..++|||||||||||++|++++++. ..+++.++.++
T Consensus 14 ~~~~~~~g~~~~~~~l~~~i~~~------------~-~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~ 78 (319)
T PRK00440 14 RTLDEIVGQEEIVERLKSYVKEK------------N-MPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASD 78 (319)
T ss_pred CcHHHhcCcHHHHHHHHHHHhCC------------C-CCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEecccc
Confidence 57889999999999988877521 1 1258999999999999999999986 34677775543
No 412
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.19 E-value=0.0005 Score=78.66 Aligned_cols=52 Identities=33% Similarity=0.455 Sum_probs=43.9
Q ss_pred CccCCCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHcCC
Q 002386 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSL 904 (929)
Q Consensus 841 ~~w~dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~gl 904 (929)
..|+++.|.+.+.+.+...+... +.+.++|||||||+|||++|+++|+....
T Consensus 14 ~~~~~iig~~~~~~~l~~~i~~~------------~~~~~~L~~G~~G~GKt~~a~~la~~l~~ 65 (367)
T PRK14970 14 QTFDDVVGQSHITNTLLNAIENN------------HLAQALLFCGPRGVGKTTCARILARKINQ 65 (367)
T ss_pred CcHHhcCCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 58999999999999998887531 34578999999999999999999997643
No 413
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.19 E-value=0.00038 Score=73.62 Aligned_cols=67 Identities=34% Similarity=0.441 Sum_probs=54.4
Q ss_pred CCccCCCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHc---CCceEEEeccccc
Q 002386 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELL 915 (929)
Q Consensus 840 ~~~w~dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~---glnfIsVkg~ELl 915 (929)
.+.++++.|++..|+.|.+-.+ .|.+. .+..++||+|+.|||||++++|+..++ |+.+|.|...+|.
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~-------~Fl~G--~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L~ 92 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTE-------QFLQG--LPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDLG 92 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHH-------HHHcC--CCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHhc
Confidence 4789999999999998877553 33332 356789999999999999999999877 8899999776553
No 414
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.19 E-value=0.0003 Score=66.71 Aligned_cols=23 Identities=61% Similarity=1.042 Sum_probs=21.9
Q ss_pred EEEECCCCcHHHHHHHHHHHHhc
Q 002386 593 ILIHGPPGSGKTSLAKAVAKSLE 615 (929)
Q Consensus 593 vLL~GppGtGKTtLaralA~~L~ 615 (929)
|+|.|+|||||||+|+.+|+.++
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~ 24 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLG 24 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
Confidence 78999999999999999999986
No 415
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.17 E-value=0.0029 Score=69.10 Aligned_cols=140 Identities=18% Similarity=0.318 Sum_probs=75.7
Q ss_pred ceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccccc---------------------cCchhhHHHHHHHHHH
Q 002386 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLS---------------------LEKGPIIRQALSNFIS 649 (929)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~---------------------~~~~~~~~~~l~~~f~ 649 (929)
..+++.||.|+|||++....-... ...+ -++..+...... ...++.....+..++.
T Consensus 50 nsviiigprgsgkT~li~~~Ls~~-q~~~--E~~l~v~Lng~~~~dk~al~~I~rql~~e~~~~~k~~gsfte~l~~lL~ 126 (408)
T KOG2228|consen 50 NSVIIIGPRGSGKTILIDTRLSDI-QENG--ENFLLVRLNGELQTDKIALKGITRQLALELNRIVKSFGSFTENLSKLLE 126 (408)
T ss_pred CceEEEccCCCCceEeeHHHHhhH-HhcC--CeEEEEEECccchhhHHHHHHHHHHHHHHHhhhheeecccchhHHHHHH
Confidence 469999999999999876544431 1111 233333222211 1112222222222332
Q ss_pred HHHhc-----CCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCCCcEEEEEecCCCCc---
Q 002386 650 EALDH-----APSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEK--- 721 (929)
Q Consensus 650 ~a~~~-----~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~VivIattn~~~~--- 721 (929)
..... .+.|.++||+|.+++ ... +. .+.+++|-....+ .++.+|+.|.+.+-
T Consensus 127 ~L~~~~~~t~~~ViFIldEfDlf~~----------h~r-Qt---llYnlfDisqs~r------~Piciig~Ttrld~lE~ 186 (408)
T KOG2228|consen 127 ALKKGDETTSGKVIFILDEFDLFAP----------HSR-QT---LLYNLFDISQSAR------APICIIGVTTRLDILEL 186 (408)
T ss_pred HHhcCCCCCCceEEEEeehhhcccc----------chh-hH---HHHHHHHHHhhcC------CCeEEEEeeccccHHHH
Confidence 22211 234666789998873 111 12 2344444433222 36899998877654
Q ss_pred cccccccCCCcceE-eeCCCC-cHHHHHHHHHHHHh
Q 002386 722 IPQSLTSSGRFDFH-VQLPAP-AASERKAILEHEIQ 755 (929)
Q Consensus 722 L~~~L~~~~Rf~~~-i~l~~P-d~~eR~~IL~~~l~ 755 (929)
|.....+ ||.+. |.++++ ..++..++++..+.
T Consensus 187 LEKRVKS--RFshr~I~m~~~~~l~~yv~l~r~ll~ 220 (408)
T KOG2228|consen 187 LEKRVKS--RFSHRVIFMLPSLPLGDYVDLYRKLLS 220 (408)
T ss_pred HHHHHHh--hcccceeeccCCCChHHHHHHHHHHhc
Confidence 4567777 99754 555444 56888888887763
No 416
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=97.16 E-value=0.00036 Score=78.20 Aligned_cols=49 Identities=27% Similarity=0.319 Sum_probs=39.9
Q ss_pred CccCCCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHc
Q 002386 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC 902 (929)
Q Consensus 841 ~~w~dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~ 902 (929)
..|++|.|.+++++.|.-.+..+ -..|+||+|+||||||++|+++|+.+
T Consensus 5 ~~f~~i~Gq~~~~~~l~~~~~~~-------------~~~~vLl~G~pG~gKT~lar~la~ll 53 (334)
T PRK13407 5 FPFSAIVGQEEMKQAMVLTAIDP-------------GIGGVLVFGDRGTGKSTAVRALAALL 53 (334)
T ss_pred CCHHHhCCHHHHHHHHHHHHhcc-------------CCCcEEEEcCCCCCHHHHHHHHHHHC
Confidence 57899999999998776543221 12579999999999999999999987
No 417
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.15 E-value=0.00028 Score=83.02 Aligned_cols=43 Identities=26% Similarity=0.520 Sum_probs=37.3
Q ss_pred ceeEEecCCCCcHHHHHHHHHHHc-----CCceEEEecccccccccCh
Q 002386 879 SNVLLYGPPGCGKTHIVGAAAAAC-----SLRFISVKGPELLNKYIGA 921 (929)
Q Consensus 879 sGiLLyGpPGtGKT~LA~alA~e~-----glnfIsVkg~ELl~kyIG~ 921 (929)
.+++||||||||||+|++|+|.++ +..++.+++.++.+.++++
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~ 196 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNA 196 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHH
Confidence 458999999999999999999987 5678899999888877655
No 418
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.15 E-value=0.00027 Score=81.97 Aligned_cols=44 Identities=25% Similarity=0.511 Sum_probs=37.3
Q ss_pred CceeEEecCCCCcHHHHHHHHHHHc-----CCceEEEecccccccccCh
Q 002386 878 RSNVLLYGPPGCGKTHIVGAAAAAC-----SLRFISVKGPELLNKYIGA 921 (929)
Q Consensus 878 ~sGiLLyGpPGtGKT~LA~alA~e~-----glnfIsVkg~ELl~kyIG~ 921 (929)
..+++||||||||||+|++|+|.++ +..++.+++.++.+.++++
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~ 184 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNA 184 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHH
Confidence 3468999999999999999999887 6789999998888776543
No 419
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.15 E-value=0.00042 Score=83.47 Aligned_cols=51 Identities=22% Similarity=0.365 Sum_probs=43.5
Q ss_pred CccCCCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHcC
Q 002386 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACS 903 (929)
Q Consensus 841 ~~w~dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~g 903 (929)
..|+++.|.+.+.+.|+..+.. -+.+..+||+||+|||||++|+++|+.+.
T Consensus 13 ~~f~dviGQe~vv~~L~~~l~~------------~rl~ha~Lf~Gp~GvGKTtlAr~lAk~Ln 63 (618)
T PRK14951 13 RSFSEMVGQEHVVQALTNALTQ------------QRLHHAYLFTGTRGVGKTTVSRILAKSLN 63 (618)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 5799999999999999887752 24566789999999999999999998865
No 420
>PLN03086 PRLI-interacting factor K; Provisional
Probab=97.15 E-value=0.0082 Score=70.92 Aligned_cols=157 Identities=16% Similarity=0.089 Sum_probs=128.1
Q ss_pred cccceeCCHHHHHHHhhccccCCCCceEEEEEEeC------------CCCeEEEEecCCcCCCCeeeecHhHHhhcCCCC
Q 002386 12 ENCFVSLPLKLIETLESTRSAHLLPQVLSLELRSR------------SNQRWVVAWSGATSSSSFIEVARQFAECISLAD 79 (929)
Q Consensus 12 ~~~~v~lp~~l~~~l~~~~~~~~~~q~~~~e~~~~------------~~~~~~~gw~g~~s~~~~iei~~~~a~~~gl~~ 79 (929)
.+.=|-||++..+.|.+.++. ..--...+|+.. .++..|+|=-..++..+.|-+.+-+-+.||+.+
T Consensus 90 ~GdKI~LPpSaL~~L~~~~~~--~~~Pm~F~l~~~~~~~~~~~~~~~~~~~th~GVlEF~A~EG~v~lP~wm~~~L~~~~ 167 (567)
T PLN03086 90 NGDKIKLPPSCFTELSDQGAF--DKGPLYFRLSVVHQEGSGEMKDTDSQKTTHSGVLEFTAEEGSVGLPPHVWSNLFPSD 167 (567)
T ss_pred CCCeEEcCHHHHHHHHhcCCC--CCCCeEEEEeccccccccccccccCCcEEEEEEEEEEcCCCeEEcCHHHHhhcCCCC
Confidence 456688999999999986541 122367788752 235789988888888889999999999999976
Q ss_pred ---CCEEEEEEeecCccceeEEEecCCcchhHHHHhcHHHHHHHHhcccceecCCCeEeEEecCceEEEEEEeccCCCCC
Q 002386 80 ---HTIVQVRVVSNVLKATLVTIEPLTEDDWEVLELNSEHAEAAILNQVRIVHEAMRFPLWLHGRTIITFHVVSTFPKKP 156 (929)
Q Consensus 80 ---~~~v~~~~~~~~~~~~~v~veP~t~dDWEi~el~a~~le~~lL~Q~r~v~~~~~~~~~~~~~~~~~~~v~~~~p~~~ 156 (929)
|..|.|+.. +.|.++.|.+.|++.|=++ |+-.-..||..|= +--+++.|.++.++-. +..-.|.|..+.|++.
T Consensus 168 ~~~~~~v~v~~~-~Lpkgt~vklqP~~~~f~d-i~npKavLE~~Lr-~~stLT~Gd~i~i~~~-~~~y~~~V~ev~P~~a 243 (567)
T PLN03086 168 PPDVPLVEVRYI-WLPKGTYAKLQPDGVGFSD-LPNHKAVLETALR-QHATLSEDDVLVVNYG-QLTYKLKVLELKPASS 243 (567)
T ss_pred CCCCCeEEEEEe-ecCCCCEEEEeeccCCcCC-cccHHHHHHHHhh-cCccccCCCEEEEecC-CEEEEEEEEEEcCCCe
Confidence 667877775 7999999999999997555 3566788998885 5889999999999994 5578999999999988
Q ss_pred eEEecCCCeEEEcccCCC
Q 002386 157 VVQLVPGTEVAVAPKRRK 174 (929)
Q Consensus 157 ~~~l~~~tev~vaPk~r~ 174 (929)
+..+.+|-||=++|..-.
T Consensus 244 VsiieTDi~VDf~~p~~~ 261 (567)
T PLN03086 244 VSVLETDIEVDIVGPDSV 261 (567)
T ss_pred eEEEeCceEEEeccCCcc
Confidence 999999999999987663
No 421
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=97.13 E-value=0.003 Score=74.01 Aligned_cols=81 Identities=21% Similarity=0.341 Sum_probs=53.1
Q ss_pred CCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccccccCc----------hhh----HHHHHHHHHHHH
Q 002386 586 HLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEK----------GPI----IRQALSNFISEA 651 (929)
Q Consensus 586 ~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~~~~----------~~~----~~~~l~~~f~~a 651 (929)
|++++.-+||+|+||+||||++..++..+.... ..+.|++..+-.... ... .+..+..+....
T Consensus 90 Gi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g---~kvlYvs~EEs~~qi~~ra~rlg~~~~~l~~~~e~~~~~I~~~i 166 (454)
T TIGR00416 90 GIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQ---MKVLYVSGEESLQQIKMRAIRLGLPEPNLYVLSETNWEQICANI 166 (454)
T ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcC---CcEEEEECcCCHHHHHHHHHHcCCChHHeEEcCCCCHHHHHHHH
Confidence 467777799999999999999999988775432 246666654321100 000 001234445555
Q ss_pred HhcCCcEEEEcccccccc
Q 002386 652 LDHAPSIVIFDNLDSIIS 669 (929)
Q Consensus 652 ~~~~PsVL~LDEiD~L~~ 669 (929)
....|.+++||.+..+..
T Consensus 167 ~~~~~~~vVIDSIq~l~~ 184 (454)
T TIGR00416 167 EEENPQACVIDSIQTLYS 184 (454)
T ss_pred HhcCCcEEEEecchhhcc
Confidence 667899999999988763
No 422
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.13 E-value=0.0091 Score=66.35 Aligned_cols=137 Identities=27% Similarity=0.446 Sum_probs=76.8
Q ss_pred CCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccccc----------------cCchhhH---HHHHHHHH
Q 002386 588 PLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLS----------------LEKGPII---RQALSNFI 648 (929)
Q Consensus 588 ~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~----------------~~~~~~~---~~~l~~~f 648 (929)
..|.++.|+|..|||||.+.|.+-++++ .+.++++|-+.. .+....+ ...+.+.+
T Consensus 28 ~~PS~~~iyG~sgTGKT~~~r~~l~~~n------~~~vw~n~~ecft~~~lle~IL~~~~~~d~dg~~~~~~~en~~d~i 101 (438)
T KOG2543|consen 28 TIPSIVHIYGHSGTGKTYLVRQLLRKLN------LENVWLNCVECFTYAILLEKILNKSQLADKDGDKVEGDAENFSDFI 101 (438)
T ss_pred ccceeEEEeccCCCchhHHHHHHHhhcC------CcceeeehHHhccHHHHHHHHHHHhccCCCchhhhhhHHHHHHHHH
Confidence 3457789999999999999999999986 566777764321 1111111 11222222
Q ss_pred ---HH--HHhc--CCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCCCcEEEEEecCCCCc
Q 002386 649 ---SE--ALDH--APSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEK 721 (929)
Q Consensus 649 ---~~--a~~~--~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~VivIattn~~~~ 721 (929)
.. +... +.-.|+||++|.+- |.+ ..++..|.++-+-... . .+.++...-..+.
T Consensus 102 ~~l~q~~~~t~~d~~~~liLDnad~lr----D~~--------a~ll~~l~~L~el~~~-~-------~i~iils~~~~e~ 161 (438)
T KOG2543|consen 102 YLLVQWPAATNRDQKVFLILDNADALR----DMD--------AILLQCLFRLYELLNE-P-------TIVIILSAPSCEK 161 (438)
T ss_pred HHHHhhHHhhccCceEEEEEcCHHhhh----ccc--------hHHHHHHHHHHHHhCC-C-------ceEEEEeccccHH
Confidence 21 1112 35588999999984 221 2455555554333221 1 2344443322221
Q ss_pred cccccccCCCcc-eEeeCCCCcHHHHHHHHHH
Q 002386 722 IPQSLTSSGRFD-FHVQLPAPAASERKAILEH 752 (929)
Q Consensus 722 L~~~L~~~~Rf~-~~i~l~~Pd~~eR~~IL~~ 752 (929)
.-+.+-|-++ .+++||.|+.++.++|+.+
T Consensus 162 --~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~ 191 (438)
T KOG2543|consen 162 --QYLINTGTLEIVVLHFPQYSVEETQVILSR 191 (438)
T ss_pred --HhhcccCCCCceEEecCCCCHHHHHHHHhc
Confidence 1111112222 4689999999999999874
No 423
>PHA00729 NTP-binding motif containing protein
Probab=97.12 E-value=0.00063 Score=71.63 Aligned_cols=24 Identities=42% Similarity=0.555 Sum_probs=22.7
Q ss_pred eEEEECCCCcHHHHHHHHHHHHhc
Q 002386 592 HILIHGPPGSGKTSLAKAVAKSLE 615 (929)
Q Consensus 592 ~vLL~GppGtGKTtLaralA~~L~ 615 (929)
+++|+|+||||||++|.++|+.+.
T Consensus 19 nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 19 SAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 699999999999999999999875
No 424
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.12 E-value=0.0011 Score=70.59 Aligned_cols=39 Identities=21% Similarity=0.324 Sum_probs=32.0
Q ss_pred CCceeEEecCCCCcHHHHHHHHHHHc---CCceEEEeccccc
Q 002386 877 LRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELL 915 (929)
Q Consensus 877 ~~sGiLLyGpPGtGKT~LA~alA~e~---glnfIsVkg~ELl 915 (929)
...+++|+||||||||+||++++.++ |.+++.+++.++.
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~ 82 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPL 82 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhH
Confidence 34579999999999999999999875 6677777776543
No 425
>PHA02624 large T antigen; Provisional
Probab=97.10 E-value=0.0015 Score=77.04 Aligned_cols=128 Identities=25% Similarity=0.318 Sum_probs=71.3
Q ss_pred CCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccccccCchhhHHHHHHHHHHHHHhcCCcEEEEcccc
Q 002386 586 HLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLD 665 (929)
Q Consensus 586 ~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD 665 (929)
++|..+.+||+||||||||+++++|++.|+ ...+.|++..-.. .=++.-+. ...+.+|||+-
T Consensus 427 giPKk~~il~~GPpnTGKTtf~~sLl~~L~------G~vlsVNsPt~ks----------~FwL~pl~--D~~~~l~dD~t 488 (647)
T PHA02624 427 NVPKRRYWLFKGPVNSGKTTLAAALLDLCG------GKSLNVNCPPDKL----------NFELGCAI--DQFMVVFEDVK 488 (647)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHcC------CeEEEeeCCcchh----------HHHhhhhh--hceEEEeeecc
Confidence 467777899999999999999999999995 3344465433111 01111111 12389999985
Q ss_pred ccccCCCC-CCCCCCchhHHHHHHHHHHHHHHhc----cccc-C-ccCCCcEEEEEecCCCCccccccccCCCcceEeeC
Q 002386 666 SIISSSSD-PEGSQPSTSVIALTKFLVDIMDEYG----EKRK-S-SCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQL 738 (929)
Q Consensus 666 ~L~~~~~~-~~~~~~~~~~~~l~~~L~~~ld~~~----~~~~-~-~~~~~~VivIattn~~~~L~~~L~~~~Rf~~~i~l 738 (929)
.-.-...+ +.|... .=...|.+.+|+.. ++.. + ..-..+- +|.|+| ...||..+.- ||...+.|
T Consensus 489 ~~~~~~~~Lp~G~~~-----dNl~~lRn~LDG~V~v~ld~KH~n~~q~~~PP-lliT~N-ey~iP~T~~~--Rf~~~~~F 559 (647)
T PHA02624 489 GQPADNKDLPSGQGM-----NNLDNLRDYLDGSVPVNLEKKHLNKRSQIFPP-GIVTMN-EYLIPQTVKA--RFAKVLDF 559 (647)
T ss_pred ccccccccCCccccc-----chhhHHHhhcCCCCccccchhccCchhccCCC-eEEeec-CcccchhHHH--HHHHhccc
Confidence 43311010 111110 11245777777651 0000 0 0000112 344555 4678888888 99988888
Q ss_pred CC
Q 002386 739 PA 740 (929)
Q Consensus 739 ~~ 740 (929)
.+
T Consensus 560 ~~ 561 (647)
T PHA02624 560 KP 561 (647)
T ss_pred cc
Confidence 63
No 426
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=97.10 E-value=0.00046 Score=77.76 Aligned_cols=36 Identities=42% Similarity=0.637 Sum_probs=33.2
Q ss_pred CCceeEEecCCCCcHHHHHHHHHHHcCCceEEEecc
Q 002386 877 LRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGP 912 (929)
Q Consensus 877 ~~sGiLLyGpPGtGKT~LA~alA~e~glnfIsVkg~ 912 (929)
...++||-||||||||++|+++|+..|.+|+.|.+.
T Consensus 42 ~~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t 77 (329)
T COG0714 42 AGGHVLLEGPPGVGKTLLARALARALGLPFVRIQCT 77 (329)
T ss_pred cCCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecC
Confidence 456799999999999999999999999999999774
No 427
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.10 E-value=0.00069 Score=81.16 Aligned_cols=52 Identities=23% Similarity=0.327 Sum_probs=43.8
Q ss_pred CccCCCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHcCC
Q 002386 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSL 904 (929)
Q Consensus 841 ~~w~dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~gl 904 (929)
..|++|.|.+.+++.|...+.. -+....+||+||||||||++|+++|+.+..
T Consensus 13 ~sf~dIiGQe~v~~~L~~ai~~------------~ri~ha~Lf~GPpG~GKTtiArilAk~L~C 64 (624)
T PRK14959 13 QTFAEVAGQETVKAILSRAAQE------------NRVAPAYLFSGTRGVGKTTIARIFAKALNC 64 (624)
T ss_pred CCHHHhcCCHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHhccc
Confidence 5799999999999999887752 133457999999999999999999998854
No 428
>PRK13409 putative ATPase RIL; Provisional
Probab=97.10 E-value=0.0024 Score=77.45 Aligned_cols=220 Identities=15% Similarity=0.100 Sum_probs=0.0
Q ss_pred CCCCceEEEECCCCcHHHHHHHHHHHHhccCcccee-------------------------------eEEEEeccccccC
Q 002386 587 LPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVA-------------------------------HIVFVCCSRLSLE 635 (929)
Q Consensus 587 ~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~-------------------------------~~~~V~~s~L~~~ 635 (929)
..++.-+-|.||.|+||||+++.++..+..+.+... .+..-........
T Consensus 96 i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~q~~~~~p~~ 175 (590)
T PRK13409 96 PKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIKVVHKPQYVDLIPKV 175 (590)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHHhccCcceeecccchhhhhhh
Q ss_pred chhhHHHHHHH-----------------------------------HHHHHHhcCCcEEEEccccccccCCCCCCCCCCc
Q 002386 636 KGPIIRQALSN-----------------------------------FISEALDHAPSIVIFDNLDSIISSSSDPEGSQPS 680 (929)
Q Consensus 636 ~~~~~~~~l~~-----------------------------------~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~ 680 (929)
..+.....+.. .+..+....|.+++|||--.-+ +.
T Consensus 176 ~~~tv~e~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al~~~p~lllLDEPts~L----------D~ 245 (590)
T PRK13409 176 FKGKVRELLKKVDERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYL----------DI 245 (590)
T ss_pred hcchHHHHHHhhhHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCC----------CH
Q ss_pred hhHHHHHHHHHHHHHHhcccccCccCCCcEEEEEecCCCCccccccccCCCcce------EeeCCCCcHHHHHHHHHHHH
Q 002386 681 TSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDF------HVQLPAPAASERKAILEHEI 754 (929)
Q Consensus 681 ~~~~~l~~~L~~~ld~~~~~~~~~~~~~~VivIattn~~~~L~~~L~~~~Rf~~------~i~l~~Pd~~eR~~IL~~~l 754 (929)
.....+.+.+.++.+ . ..+|.++...+.++..--+-..+.. .+.-+....+...+++..++
T Consensus 246 ~~~~~l~~~i~~l~~--g-----------~tvIivsHd~~~l~~~~D~v~vl~~~~g~~g~~~~~~~~~~~i~~~~~~~~ 312 (590)
T PRK13409 246 RQRLNVARLIRELAE--G-----------KYVLVVEHDLAVLDYLADNVHIAYGEPGAYGVVSKPKGVRVGINEYLKGYL 312 (590)
T ss_pred HHHHHHHHHHHHHHC--C-----------CEEEEEeCCHHHHHHhCCEEEEEeCCccccceecchhHHHHhHHHHHHhcc
Q ss_pred hhcccccCHHHHHHHHhhcCCCChhhHHHHHHHHHHHHhhccccCCcccccccccccccccccccccccccccccccccc
Q 002386 755 QRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLPVAMRDITKT 834 (929)
Q Consensus 755 ~~~~~~~~d~~l~~LA~~teG~s~~DL~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~lt~edf~~al~~~~P~slr~v~l~ 834 (929)
........+..+..-......... ....+..+++.....++. +..+...
T Consensus 313 ~~e~~~~~~~~~~~~~~~~~~~~~----------------------------~~~~l~~~~ls~~~~~~~---l~~~s~~ 361 (590)
T PRK13409 313 PEENMRIRPEPIEFEERPPRDESE----------------------------RETLVEYPDLTKKLGDFS---LEVEGGE 361 (590)
T ss_pred hhhhhhccccCcceecCCCccccC----------------------------CceEEEEcceEEEECCEE---EEecceE
Q ss_pred ccCCCCCccCCCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHH
Q 002386 835 SAEGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAA 900 (929)
Q Consensus 835 ~~~~~~~~w~dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~ 900 (929)
... +.-+.|.||+|+|||||++++|+
T Consensus 362 i~~----------------------------------------Geiv~l~G~NGsGKSTLlk~L~G 387 (590)
T PRK13409 362 IYE----------------------------------------GEVIGIVGPNGIGKTTFAKLLAG 387 (590)
T ss_pred ECC----------------------------------------CCEEEEECCCCCCHHHHHHHHhC
No 429
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=97.08 E-value=0.0036 Score=66.48 Aligned_cols=79 Identities=25% Similarity=0.400 Sum_probs=49.1
Q ss_pred CCCCCceEEEECCCCcHHHHHHHHHHHHhccC-ccceeeEEEEeccc--------------------------------c
Q 002386 586 HLPLPGHILIHGPPGSGKTSLAKAVAKSLEHH-KDLVAHIVFVCCSR--------------------------------L 632 (929)
Q Consensus 586 ~~~~~~~vLL~GppGtGKTtLaralA~~L~~~-~~~~~~~~~V~~s~--------------------------------L 632 (929)
|+|.+..+|+.|+||+|||+++..++...... . ..+.|++..+ .
T Consensus 15 Gip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~g---e~vlyvs~ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~ 91 (226)
T PF06745_consen 15 GIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFG---EKVLYVSFEEPPEELIENMKSFGWDLEEYEDSGKLKIIDAFPE 91 (226)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT-----EEEEESSS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGG
T ss_pred CCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcC---CcEEEEEecCCHHHHHHHHHHcCCcHHHHhhcCCEEEEecccc
Confidence 57778889999999999999998877544222 1 3344444321 1
Q ss_pred ccC-chhhHHHHHHHHHHHHHhcCCcEEEEcccccc
Q 002386 633 SLE-KGPIIRQALSNFISEALDHAPSIVIFDNLDSI 667 (929)
Q Consensus 633 ~~~-~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L 667 (929)
... ........+..+.+......+.+++||.+..+
T Consensus 92 ~~~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls~l 127 (226)
T PF06745_consen 92 RIGWSPNDLEELLSKIREAIEELKPDRVVIDSLSAL 127 (226)
T ss_dssp GST-TSCCHHHHHHHHHHHHHHHTSSEEEEETHHHH
T ss_pred cccccccCHHHHHHHHHHHHHhcCCCEEEEECHHHH
Confidence 100 01223344444444555567799999999988
No 430
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.08 E-value=0.0013 Score=74.37 Aligned_cols=27 Identities=37% Similarity=0.546 Sum_probs=23.8
Q ss_pred ceEEEECCCCcHHHHHHHHHHHHhccC
Q 002386 591 GHILIHGPPGSGKTSLAKAVAKSLEHH 617 (929)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~L~~~ 617 (929)
...+|.||+|+|||||++.+++.+...
T Consensus 170 QR~lIvgppGvGKTTLaK~Ian~I~~n 196 (416)
T PRK09376 170 QRGLIVAPPKAGKTVLLQNIANSITTN 196 (416)
T ss_pred ceEEEeCCCCCChhHHHHHHHHHHHhh
Confidence 349999999999999999999988654
No 431
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.08 E-value=0.0025 Score=65.17 Aligned_cols=75 Identities=27% Similarity=0.231 Sum_probs=45.0
Q ss_pred CCCCceEEEECCCCcHHHHHHHHHHHHhccCcccee----eEEEEeccccccCchhhHHHHHHHHHHHHHhcCCcEEEEc
Q 002386 587 LPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVA----HIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFD 662 (929)
Q Consensus 587 ~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~----~~~~V~~s~L~~~~~~~~~~~l~~~f~~a~~~~PsVL~LD 662 (929)
+.++..+.|.||+|+|||||++.++..+....+... .+.++. ... .-+.|+ +++ -.+..+....|.++++|
T Consensus 22 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~-q~~-~LSgGq-~qr--v~laral~~~p~lllLD 96 (177)
T cd03222 22 VKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKP-QYI-DLSGGE-LQR--VAIAAALLRNATFYLFD 96 (177)
T ss_pred ECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEc-ccC-CCCHHH-HHH--HHHHHHHhcCCCEEEEE
Confidence 455567899999999999999999987653322110 011111 110 111222 222 23455666789999999
Q ss_pred cccc
Q 002386 663 NLDS 666 (929)
Q Consensus 663 EiD~ 666 (929)
|--.
T Consensus 97 EPts 100 (177)
T cd03222 97 EPSA 100 (177)
T ss_pred CCcc
Confidence 9744
No 432
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.06 E-value=0.00042 Score=81.95 Aligned_cols=34 Identities=29% Similarity=0.585 Sum_probs=31.7
Q ss_pred eeEEecCCCCcHHHHHHHHHHHcCCceEEEeccc
Q 002386 880 NVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPE 913 (929)
Q Consensus 880 GiLLyGpPGtGKT~LA~alA~e~glnfIsVkg~E 913 (929)
=+||+||||-||||||..+|++||+..+.|+.+|
T Consensus 328 ilLL~GppGlGKTTLAHViAkqaGYsVvEINASD 361 (877)
T KOG1969|consen 328 ILLLCGPPGLGKTTLAHVIAKQAGYSVVEINASD 361 (877)
T ss_pred eEEeecCCCCChhHHHHHHHHhcCceEEEecccc
Confidence 4568999999999999999999999999999986
No 433
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.06 E-value=0.0007 Score=68.96 Aligned_cols=79 Identities=22% Similarity=0.305 Sum_probs=42.7
Q ss_pred ccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccccccCc
Q 002386 557 SWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEK 636 (929)
Q Consensus 557 ~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~~~~ 636 (929)
.|.+..++++...+. .. ....+..++|+|++|+|||+++++++..+..... .+..++|.......
T Consensus 3 vgR~~e~~~l~~~l~-~~-----------~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~---~~~~~~~~~~~~~~ 67 (185)
T PF13191_consen 3 VGREEEIERLRDLLD-AA-----------QSGSPRNLLLTGESGSGKTSLLRALLDRLAERGG---YVISINCDDSERNP 67 (185)
T ss_dssp TT-HHHHHHHHHTTG-GT-----------SS-----EEE-B-TTSSHHHHHHHHHHHHHHHT-----EEEEEEETTTS-H
T ss_pred CCHHHHHHHHHHHHH-HH-----------HcCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCC---EEEEEEEeccccch
Confidence 466777777766442 11 1233467999999999999999999999875522 26667776553223
Q ss_pred hhhHHHHHHHHHHH
Q 002386 637 GPIIRQALSNFISE 650 (929)
Q Consensus 637 ~~~~~~~l~~~f~~ 650 (929)
.......+++++..
T Consensus 68 ~~~~~~~~~~l~~~ 81 (185)
T PF13191_consen 68 YSPFRSALRQLIDQ 81 (185)
T ss_dssp HHHHHHHHHHHS--
T ss_pred hhHHHHHHHHHHHH
Confidence 33334444444444
No 434
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.06 E-value=0.00041 Score=67.79 Aligned_cols=36 Identities=25% Similarity=0.535 Sum_probs=28.2
Q ss_pred eEEecCCCCcHHHHHHHHHHHcCCceEEEecccccccc
Q 002386 881 VLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKY 918 (929)
Q Consensus 881 iLLyGpPGtGKT~LA~alA~e~glnfIsVkg~ELl~ky 918 (929)
+++.||||||||++|+.+++..+ +..|+..++..+.
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~--~~~i~~D~~~~~~ 37 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG--AVVISQDEIRRRL 37 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST--EEEEEHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHCC--CEEEeHHHHHHHH
Confidence 68999999999999999999999 4445554544433
No 435
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.05 E-value=0.00067 Score=82.30 Aligned_cols=52 Identities=25% Similarity=0.381 Sum_probs=44.3
Q ss_pred CccCCCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHcCC
Q 002386 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSL 904 (929)
Q Consensus 841 ~~w~dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~gl 904 (929)
..|+++.|.+.+++.|...+..- +...++||+||+|||||++|+++|+.++.
T Consensus 13 ~~f~~liGq~~i~~~L~~~l~~~------------rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c 64 (620)
T PRK14948 13 QRFDELVGQEAIATTLKNALISN------------RIAPAYLFTGPRGTGKTSSARILAKSLNC 64 (620)
T ss_pred CcHhhccChHHHHHHHHHHHHcC------------CCCceEEEECCCCCChHHHHHHHHHHhcC
Confidence 57999999999999998887631 34567999999999999999999998754
No 436
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.05 E-value=0.0063 Score=70.28 Aligned_cols=121 Identities=26% Similarity=0.330 Sum_probs=67.8
Q ss_pred eEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccccccCchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCC
Q 002386 592 HILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSS 671 (929)
Q Consensus 592 ~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~~ 671 (929)
-++|+||.+|||||+++.+.+.+... +++++..++......- ...+..+ ..+.......+||||++.+-
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~------~iy~~~~d~~~~~~~l-~d~~~~~-~~~~~~~~~yifLDEIq~v~--- 107 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEE------IIYINFDDLRLDRIEL-LDLLRAY-IELKEREKSYIFLDEIQNVP--- 107 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcc------eEEEEecchhcchhhH-HHHHHHH-HHhhccCCceEEEecccCch---
Confidence 69999999999999998888876521 5555554444332221 1112222 22222244799999998763
Q ss_pred CCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCCCcEEEEEecCCCCc--cccccccCCCcceEeeCCCCcHHHHHH
Q 002386 672 SDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEK--IPQSLTSSGRFDFHVQLPAPAASERKA 748 (929)
Q Consensus 672 ~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~VivIattn~~~~--L~~~L~~~~Rf~~~i~l~~Pd~~eR~~ 748 (929)
....++..+.|.... .+++.+++..... +...| +||. ..+.+.|.+..+...
T Consensus 108 -------------~W~~~lk~l~d~~~~---------~v~itgsss~ll~~~~~~~L--~GR~-~~~~l~PlSF~Efl~ 161 (398)
T COG1373 108 -------------DWERALKYLYDRGNL---------DVLITGSSSSLLSKEISESL--AGRG-KDLELYPLSFREFLK 161 (398)
T ss_pred -------------hHHHHHHHHHccccc---------eEEEECCchhhhccchhhhc--CCCc-eeEEECCCCHHHHHh
Confidence 223334444433211 1444444333222 22333 3574 478888899988865
No 437
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.04 E-value=0.00064 Score=82.41 Aligned_cols=51 Identities=24% Similarity=0.371 Sum_probs=42.8
Q ss_pred CccCCCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHcC
Q 002386 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACS 903 (929)
Q Consensus 841 ~~w~dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~g 903 (929)
..|+++.|.+.+++.|+..+.. -+.+..+|||||||||||++|+++|+...
T Consensus 13 ~~~~eiiGq~~~~~~L~~~i~~------------~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~ 63 (585)
T PRK14950 13 QTFAELVGQEHVVQTLRNAIAE------------GRVAHAYLFTGPRGVGKTSTARILAKAVN 63 (585)
T ss_pred CCHHHhcCCHHHHHHHHHHHHh------------CCCceEEEEECCCCCCHHHHHHHHHHHhc
Confidence 5799999999999999887652 13455689999999999999999998764
No 438
>PRK07261 topology modulation protein; Provisional
Probab=97.04 E-value=0.001 Score=67.71 Aligned_cols=23 Identities=39% Similarity=0.637 Sum_probs=21.8
Q ss_pred EEEECCCCcHHHHHHHHHHHHhc
Q 002386 593 ILIHGPPGSGKTSLAKAVAKSLE 615 (929)
Q Consensus 593 vLL~GppGtGKTtLaralA~~L~ 615 (929)
++|+|+||+||||+|+.+++.++
T Consensus 3 i~i~G~~GsGKSTla~~l~~~~~ 25 (171)
T PRK07261 3 IAIIGYSGSGKSTLARKLSQHYN 25 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhC
Confidence 89999999999999999999876
No 439
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=97.03 E-value=0.00046 Score=83.65 Aligned_cols=73 Identities=26% Similarity=0.360 Sum_probs=55.9
Q ss_pred CccCCCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHcCCc----eEEEec-----
Q 002386 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLR----FISVKG----- 911 (929)
Q Consensus 841 ~~w~dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~gln----fIsVkg----- 911 (929)
.-|+++.|.+++++.++..+.. +.+++|+||||||||++|+++|+.++.+ ++.+--
T Consensus 15 ~~~~~viG~~~a~~~l~~a~~~---------------~~~~ll~G~pG~GKT~la~~la~~l~~~~~~~~~~~~n~~~~~ 79 (608)
T TIGR00764 15 RLIDQVIGQEEAVEIIKKAAKQ---------------KRNVLLIGEPGVGKSMLAKAMAELLPDEELEDILVYPNPEDPN 79 (608)
T ss_pred hhHhhccCHHHHHHHHHHHHHc---------------CCCEEEECCCCCCHHHHHHHHHHHcCchhheeEEEEeCCCCCc
Confidence 5789999999999988887652 2489999999999999999999999765 222222
Q ss_pred -ccccccccChhhHHHhh
Q 002386 912 -PELLNKYIGASEQAVRR 928 (929)
Q Consensus 912 -~ELl~kyIG~SEq~VRd 928 (929)
+-+...+-|.+|+.|+.
T Consensus 80 ~~~~~~v~~~~g~~~~~~ 97 (608)
T TIGR00764 80 MPRIVEVPAGEGREIVED 97 (608)
T ss_pred hHHHHHHHHhhchHHHHH
Confidence 34445667888887764
No 440
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=97.03 E-value=0.0068 Score=68.26 Aligned_cols=84 Identities=12% Similarity=0.090 Sum_probs=51.3
Q ss_pred CCCCCceEEEECCCCcHHHHHHHHHHHHhccC---ccceeeEEEEecccc-ccC--------------------------
Q 002386 586 HLPLPGHILIHGPPGSGKTSLAKAVAKSLEHH---KDLVAHIVFVCCSRL-SLE-------------------------- 635 (929)
Q Consensus 586 ~~~~~~~vLL~GppGtGKTtLaralA~~L~~~---~~~~~~~~~V~~s~L-~~~-------------------------- 635 (929)
|++.+.-+.|+|+||||||+|+..+|-..... .+....++|++...- ...
T Consensus 122 Gi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~ia~~~g~d~~~~l~~I~~~~~~ 201 (344)
T PLN03187 122 GIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVPIAERFGMDADAVLDNIIYARAY 201 (344)
T ss_pred CCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHHHHHHcCCChhhhcCeEEEecCC
Confidence 46666778899999999999999887544221 122256788877541 100
Q ss_pred chhhHHHHHHHHHHHHHhcCCcEEEEcccccccc
Q 002386 636 KGPIIRQALSNFISEALDHAPSIVIFDNLDSIIS 669 (929)
Q Consensus 636 ~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~ 669 (929)
........+..+........+.+|+||-+-.++.
T Consensus 202 ~~e~~~~~l~~l~~~i~~~~~~LvVIDSital~r 235 (344)
T PLN03187 202 TYEHQYNLLLGLAAKMAEEPFRLLIVDSVIALFR 235 (344)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHhhh
Confidence 0111112222222233345688999999988874
No 441
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.03 E-value=0.00066 Score=80.15 Aligned_cols=51 Identities=25% Similarity=0.374 Sum_probs=42.7
Q ss_pred CccCCCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHcC
Q 002386 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACS 903 (929)
Q Consensus 841 ~~w~dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~g 903 (929)
..|+++.|.+.+.+.|+..+.. -+.+..+|||||+|||||++|+++|+...
T Consensus 13 ~~f~diiGq~~i~~~L~~~i~~------------~~i~hayLf~Gp~G~GKTtlAr~lAk~L~ 63 (486)
T PRK14953 13 KFFKEVIGQEIVVRILKNAVKL------------QRVSHAYIFAGPRGTGKTTIARILAKVLN 63 (486)
T ss_pred CcHHHccChHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 5789999999999999887742 23445689999999999999999999864
No 442
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=97.03 E-value=0.00041 Score=79.17 Aligned_cols=47 Identities=30% Similarity=0.469 Sum_probs=38.8
Q ss_pred CccCCCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHc
Q 002386 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC 902 (929)
Q Consensus 841 ~~w~dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~ 902 (929)
.++.||-|++.+|+.|..... -..|+||+||||||||+||+.+...+
T Consensus 176 ~D~~DV~GQ~~AKrAleiAAA---------------GgHnLl~~GpPGtGKTmla~Rl~~lL 222 (490)
T COG0606 176 PDFKDVKGQEQAKRALEIAAA---------------GGHNLLLVGPPGTGKTMLASRLPGLL 222 (490)
T ss_pred cchhhhcCcHHHHHHHHHHHh---------------cCCcEEEecCCCCchHHhhhhhcccC
Confidence 478899999999999876542 24689999999999999999877543
No 443
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=97.03 E-value=0.00072 Score=73.97 Aligned_cols=33 Identities=30% Similarity=0.695 Sum_probs=28.4
Q ss_pred eeEEecCCCCcHHHHHHHHHHHcCCc---eEEEecc
Q 002386 880 NVLLYGPPGCGKTHIVGAAAAACSLR---FISVKGP 912 (929)
Q Consensus 880 GiLLyGpPGtGKT~LA~alA~e~gln---fIsVkg~ 912 (929)
.++|.||||||||+||+.+|....-+ ||++...
T Consensus 164 SmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt 199 (554)
T KOG2028|consen 164 SMILWGPPGTGKTTLARLIASTSKKHSYRFVELSAT 199 (554)
T ss_pred ceEEecCCCCchHHHHHHHHhhcCCCceEEEEEecc
Confidence 38999999999999999999888655 9988653
No 444
>PRK06526 transposase; Provisional
Probab=97.03 E-value=0.00025 Score=76.75 Aligned_cols=41 Identities=27% Similarity=0.545 Sum_probs=33.1
Q ss_pred CceeEEecCCCCcHHHHHHHHHHHc---CCceEEEecccccccc
Q 002386 878 RSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKY 918 (929)
Q Consensus 878 ~sGiLLyGpPGtGKT~LA~alA~e~---glnfIsVkg~ELl~ky 918 (929)
+.+++|+||||||||+||.++|.++ |...+-+..+++++..
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l 141 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARL 141 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHH
Confidence 4689999999999999999999765 6666666677776654
No 445
>PRK06620 hypothetical protein; Validated
Probab=97.03 E-value=0.00041 Score=73.17 Aligned_cols=30 Identities=23% Similarity=0.314 Sum_probs=26.1
Q ss_pred ceeEEecCCCCcHHHHHHHHHHHcCCceEE
Q 002386 879 SNVLLYGPPGCGKTHIVGAAAAACSLRFIS 908 (929)
Q Consensus 879 sGiLLyGpPGtGKT~LA~alA~e~glnfIs 908 (929)
..++||||||||||+|+++++...+..|++
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~ 74 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNAYIIK 74 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCCEEcc
Confidence 468999999999999999999988866554
No 446
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=97.01 E-value=0.00082 Score=80.45 Aligned_cols=59 Identities=24% Similarity=0.470 Sum_probs=46.1
Q ss_pred CccCCCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHc----------CCceEEEe
Q 002386 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC----------SLRFISVK 910 (929)
Q Consensus 841 ~~w~dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~----------glnfIsVk 910 (929)
..|+++.|.+...+.++..+. . ..+.++|||||||||||++|++++.++ +.+|+.++
T Consensus 62 ~~f~~iiGqs~~i~~l~~al~---------~----~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id 128 (531)
T TIGR02902 62 KSFDEIIGQEEGIKALKAALC---------G----PNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEID 128 (531)
T ss_pred CCHHHeeCcHHHHHHHHHHHh---------C----CCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEc
Confidence 568889999988888875432 1 123579999999999999999998753 36799998
Q ss_pred cc
Q 002386 911 GP 912 (929)
Q Consensus 911 g~ 912 (929)
+.
T Consensus 129 ~~ 130 (531)
T TIGR02902 129 AT 130 (531)
T ss_pred cc
Confidence 75
No 447
>PRK08118 topology modulation protein; Reviewed
Probab=97.00 E-value=0.00097 Score=67.54 Aligned_cols=24 Identities=38% Similarity=0.728 Sum_probs=22.8
Q ss_pred eEEEECCCCcHHHHHHHHHHHHhc
Q 002386 592 HILIHGPPGSGKTSLAKAVAKSLE 615 (929)
Q Consensus 592 ~vLL~GppGtGKTtLaralA~~L~ 615 (929)
.|+|+|+||+||||+|+.+++.++
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~ 26 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLN 26 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 499999999999999999999987
No 448
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=97.00 E-value=0.0047 Score=67.21 Aligned_cols=30 Identities=23% Similarity=0.317 Sum_probs=25.7
Q ss_pred CCCCCceEEEECCCCcHHHHHHHHHHHHhc
Q 002386 586 HLPLPGHILIHGPPGSGKTSLAKAVAKSLE 615 (929)
Q Consensus 586 ~~~~~~~vLL~GppGtGKTtLaralA~~L~ 615 (929)
|++.+.-++++|+||||||+++-.+|....
T Consensus 32 Gip~gs~~lI~G~pGtGKT~l~~qf~~~~a 61 (259)
T TIGR03878 32 GIPAYSVINITGVSDTGKSLMVEQFAVTQA 61 (259)
T ss_pred CeECCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 567777899999999999999999877653
No 449
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=96.99 E-value=0.0014 Score=67.96 Aligned_cols=67 Identities=12% Similarity=0.185 Sum_probs=36.9
Q ss_pred CCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCCCcEEEEEecCCCCccccccccCCCcce
Q 002386 655 APSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDF 734 (929)
Q Consensus 655 ~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~VivIattn~~~~L~~~L~~~~Rf~~ 734 (929)
.+++++|||+..+++.+..... .....+ ..+..- ...++-++.+|+.+..+|+.++. +.+.
T Consensus 79 ~~~liviDEa~~~~~~r~~~~~--------~~~~~~-~~l~~h--------Rh~g~diiliTQ~~~~id~~ir~--lve~ 139 (193)
T PF05707_consen 79 KGSLIVIDEAQNFFPSRSWKGK--------KVPEII-EFLAQH--------RHYGWDIILITQSPSQIDKFIRD--LVEY 139 (193)
T ss_dssp TT-EEEETTGGGTSB---T-T------------HHH-HGGGGC--------CCTT-EEEEEES-GGGB-HHHHC--CEEE
T ss_pred CCcEEEEECChhhcCCCccccc--------cchHHH-HHHHHh--------CcCCcEEEEEeCCHHHHhHHHHH--HHhe
Confidence 5789999999999974433110 111112 222111 11257889999999999999987 7776
Q ss_pred EeeCCC
Q 002386 735 HVQLPA 740 (929)
Q Consensus 735 ~i~l~~ 740 (929)
++++..
T Consensus 140 ~~~~~k 145 (193)
T PF05707_consen 140 HYHCRK 145 (193)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 766543
No 450
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.99 E-value=0.028 Score=62.93 Aligned_cols=30 Identities=30% Similarity=0.324 Sum_probs=26.5
Q ss_pred CCCceEEEECCCCcHHHHHHHHHHHHhccC
Q 002386 588 PLPGHILIHGPPGSGKTSLAKAVAKSLEHH 617 (929)
Q Consensus 588 ~~~~~vLL~GppGtGKTtLaralA~~L~~~ 617 (929)
..+..+-|+|+=|||||++++.+-+.+...
T Consensus 18 ~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~ 47 (325)
T PF07693_consen 18 DDPFVIGLYGEWGSGKSSFLNMLKEELKED 47 (325)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 456779999999999999999999998765
No 451
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.98 E-value=0.0064 Score=67.86 Aligned_cols=84 Identities=10% Similarity=0.116 Sum_probs=51.1
Q ss_pred CCCCCceEEEECCCCcHHHHHHHHHHHHhccC---ccceeeEEEEecccc-ccC-----------c--------------
Q 002386 586 HLPLPGHILIHGPPGSGKTSLAKAVAKSLEHH---KDLVAHIVFVCCSRL-SLE-----------K-------------- 636 (929)
Q Consensus 586 ~~~~~~~vLL~GppGtGKTtLaralA~~L~~~---~~~~~~~~~V~~s~L-~~~-----------~-------------- 636 (929)
|++.+.-+.|+|+||+|||+++..+|-..... ......++|++...- ... .
T Consensus 92 Gi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~~a~~~g~d~~~~l~~i~~~~~~ 171 (313)
T TIGR02238 92 GIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRAIAERFGVDPDAVLDNILYARAY 171 (313)
T ss_pred CCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHHHHHHcCCChHHhcCcEEEecCC
Confidence 46777778999999999999999887543211 111246778876541 111 0
Q ss_pred -hhhHHHHHHHHHHHHHhcCCcEEEEcccccccc
Q 002386 637 -GPIIRQALSNFISEALDHAPSIVIFDNLDSIIS 669 (929)
Q Consensus 637 -~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~ 669 (929)
.......+..+........+.+|+||-+-.++.
T Consensus 172 ~~e~~~~~l~~l~~~i~~~~~~LvVIDSisal~r 205 (313)
T TIGR02238 172 TSEHQMELLDYLAAKFSEEPFRLLIVDSIMALFR 205 (313)
T ss_pred CHHHHHHHHHHHHHHhhccCCCEEEEEcchHhhh
Confidence 011112223322233345788999999998875
No 452
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.98 E-value=0.005 Score=65.99 Aligned_cols=96 Identities=17% Similarity=0.211 Sum_probs=56.8
Q ss_pred CCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccccccCchhhHHHHHHH--------------------
Q 002386 587 LPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSN-------------------- 646 (929)
Q Consensus 587 ~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~~~~~~~~~~~l~~-------------------- 646 (929)
+..+..+-|.|.+||||||++|.+.+-..... .-++.+..++.........+.+.+
T Consensus 36 i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~----G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelS 111 (268)
T COG4608 36 IKEGETLGLVGESGCGKSTLGRLILGLEEPTS----GEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELS 111 (268)
T ss_pred EcCCCEEEEEecCCCCHHHHHHHHHcCcCCCC----ceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccC
Confidence 45567788999999999999999998765322 233333333222112222222222
Q ss_pred -------HHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHH
Q 002386 647 -------FISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDE 696 (929)
Q Consensus 647 -------~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~ 696 (929)
.+..|....|.+++.||.-+.+ ..+...++.+.|.++-+.
T Consensus 112 GGQrQRi~IARALal~P~liV~DEpvSaL----------DvSiqaqIlnLL~dlq~~ 158 (268)
T COG4608 112 GGQRQRIGIARALALNPKLIVADEPVSAL----------DVSVQAQILNLLKDLQEE 158 (268)
T ss_pred chhhhhHHHHHHHhhCCcEEEecCchhhc----------chhHHHHHHHHHHHHHHH
Confidence 3334455679999999997765 223344556655554443
No 453
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=96.98 E-value=0.00061 Score=66.74 Aligned_cols=30 Identities=23% Similarity=0.497 Sum_probs=28.1
Q ss_pred eEEecCCCCcHHHHHHHHHHHcCCceEEEe
Q 002386 881 VLLYGPPGCGKTHIVGAAAAACSLRFISVK 910 (929)
Q Consensus 881 iLLyGpPGtGKT~LA~alA~e~glnfIsVk 910 (929)
|.+.|+||||||++|+.+|..+|++|+...
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 678999999999999999999999999876
No 454
>PRK09183 transposase/IS protein; Provisional
Probab=96.97 E-value=0.00051 Score=74.63 Aligned_cols=42 Identities=29% Similarity=0.476 Sum_probs=34.6
Q ss_pred CCceeEEecCCCCcHHHHHHHHHHH---cCCceEEEecccccccc
Q 002386 877 LRSNVLLYGPPGCGKTHIVGAAAAA---CSLRFISVKGPELLNKY 918 (929)
Q Consensus 877 ~~sGiLLyGpPGtGKT~LA~alA~e---~glnfIsVkg~ELl~ky 918 (929)
.+.+++|+||||||||+||.++|.+ .|..+.-+..++++..+
T Consensus 101 ~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l 145 (259)
T PRK09183 101 RNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQL 145 (259)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHH
Confidence 3568999999999999999999765 37777777888887654
No 455
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.97 E-value=0.0049 Score=65.69 Aligned_cols=135 Identities=21% Similarity=0.340 Sum_probs=73.7
Q ss_pred CCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccccccCc--------------hhhHHHH-------HH
Q 002386 587 LPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEK--------------GPIIRQA-------LS 645 (929)
Q Consensus 587 ~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~~~~--------------~~~~~~~-------l~ 645 (929)
++.+-.+++.|++|||||++++.+...+.... .+++.+.. ...+.. ..+.+.. +.
T Consensus 10 ~~~~fr~viIG~sGSGKT~li~~lL~~~~~~f---~~I~l~t~-~~n~~~~~~i~p~~i~~~~~~e~le~~l~~~k~~I~ 85 (241)
T PF04665_consen 10 LKDPFRMVIIGKSGSGKTTLIKSLLYYLRHKF---DHIFLITP-EYNNEYYKYIWPDHIFKVFDKEELEYILIRQKEKIE 85 (241)
T ss_pred cCCCceEEEECCCCCCHHHHHHHHHHhhcccC---CEEEEEec-CCchhhhhhcchhhccccccHHHHHHHHHHHHHHHH
Confidence 34455699999999999999999988765432 23332221 111100 1111111 11
Q ss_pred HHHHHHHhc---CCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCCCcEEEEEecCCCCcc
Q 002386 646 NFISEALDH---APSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKI 722 (929)
Q Consensus 646 ~~f~~a~~~---~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~VivIattn~~~~L 722 (929)
+........ .+.+|+|||+..- . .....+..++ .. + ..-++.+|..++....+
T Consensus 86 k~~~k~~~~k~~~~~LiIlDD~~~~-------~-----~k~~~l~~~~----~~--g------RH~~is~i~l~Q~~~~l 141 (241)
T PF04665_consen 86 KYIKKSPQKKNNPRFLIILDDLGDK-------K-----LKSKILRQFF----NN--G------RHYNISIIFLSQSYFHL 141 (241)
T ss_pred HHhhhhcccCCCCCeEEEEeCCCCc-------h-----hhhHHHHHHH----hc--c------cccceEEEEEeeecccC
Confidence 222212122 2579999997320 0 0111222222 11 1 11258889999999999
Q ss_pred ccccccCCCcceEeeCCCCcHHHHHHHHHH
Q 002386 723 PQSLTSSGRFDFHVQLPAPAASERKAILEH 752 (929)
Q Consensus 723 ~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~ 752 (929)
|+.+++ -.+.++-++ -+...+.-|++.
T Consensus 142 p~~iR~--n~~y~i~~~-~s~~dl~~i~~~ 168 (241)
T PF04665_consen 142 PPNIRS--NIDYFIIFN-NSKRDLENIYRN 168 (241)
T ss_pred CHHHhh--cceEEEEec-CcHHHHHHHHHh
Confidence 999877 566666665 466666655554
No 456
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.97 E-value=0.00093 Score=75.70 Aligned_cols=74 Identities=20% Similarity=0.402 Sum_probs=46.0
Q ss_pred CceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEE-ecccc---------ccCchhhHHHHHHHHHHHHHhcCCcEE
Q 002386 590 PGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFV-CCSRL---------SLEKGPIIRQALSNFISEALDHAPSIV 659 (929)
Q Consensus 590 ~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V-~~s~L---------~~~~~~~~~~~l~~~f~~a~~~~PsVL 659 (929)
.+.++|+||+|+||||+++++++.+..... .+++.+ +..++ .....+.....+.+.+..+....|.+|
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~~~~~--~~i~tiEdp~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~~pd~i 199 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYINKNAA--GHIITIEDPIEYVHRNKRSLINQREVGLDTLSFANALRAALREDPDVI 199 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCcCCC--CEEEEEcCChhhhccCccceEEccccCCCCcCHHHHHHHhhccCCCEE
Confidence 367999999999999999999998753321 122222 11111 011111111235566667777899999
Q ss_pred EEcccc
Q 002386 660 IFDNLD 665 (929)
Q Consensus 660 ~LDEiD 665 (929)
++||+.
T Consensus 200 ~vgEir 205 (343)
T TIGR01420 200 LIGEMR 205 (343)
T ss_pred EEeCCC
Confidence 999983
No 457
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=96.97 E-value=0.00086 Score=80.89 Aligned_cols=52 Identities=25% Similarity=0.337 Sum_probs=44.6
Q ss_pred CccCCCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHcCC
Q 002386 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSL 904 (929)
Q Consensus 841 ~~w~dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~gl 904 (929)
..|+++.|.+.+++.|...+.. -+.+..+||+||+|+|||++|+++|+.+..
T Consensus 21 ~~f~dliGq~~~v~~L~~~~~~------------gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c 72 (598)
T PRK09111 21 QTFDDLIGQEAMVRTLTNAFET------------GRIAQAFMLTGVRGVGKTTTARILARALNY 72 (598)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHhhCc
Confidence 5799999999999999887752 255678999999999999999999998754
No 458
>PRK06893 DNA replication initiation factor; Validated
Probab=96.96 E-value=0.00045 Score=73.71 Aligned_cols=23 Identities=22% Similarity=0.459 Sum_probs=21.2
Q ss_pred eeEEecCCCCcHHHHHHHHHHHc
Q 002386 880 NVLLYGPPGCGKTHIVGAAAAAC 902 (929)
Q Consensus 880 GiLLyGpPGtGKT~LA~alA~e~ 902 (929)
.++||||||||||+|+.|+|++.
T Consensus 41 ~l~l~G~~G~GKThL~~ai~~~~ 63 (229)
T PRK06893 41 FFYIWGGKSSGKSHLLKAVSNHY 63 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999999885
No 459
>PRK04328 hypothetical protein; Provisional
Probab=96.96 E-value=0.0059 Score=66.02 Aligned_cols=28 Identities=25% Similarity=0.528 Sum_probs=24.2
Q ss_pred CCCCCceEEEECCCCcHHHHHHHHHHHH
Q 002386 586 HLPLPGHILIHGPPGSGKTSLAKAVAKS 613 (929)
Q Consensus 586 ~~~~~~~vLL~GppGtGKTtLaralA~~ 613 (929)
|+|++..+||+|+||||||+++..++.+
T Consensus 19 Gip~gs~ili~G~pGsGKT~l~~~fl~~ 46 (249)
T PRK04328 19 GIPERNVVLLSGGPGTGKSIFSQQFLWN 46 (249)
T ss_pred CCcCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 5777788999999999999999887665
No 460
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=96.95 E-value=0.0044 Score=64.67 Aligned_cols=77 Identities=18% Similarity=0.229 Sum_probs=43.4
Q ss_pred CCCceEEEECCCCcHHHHHHHHHHHHhc--cCcc-c---------eeeEEEEecc-ccc-c--CchhhHHHHHHHHHHHH
Q 002386 588 PLPGHILIHGPPGSGKTSLAKAVAKSLE--HHKD-L---------VAHIVFVCCS-RLS-L--EKGPIIRQALSNFISEA 651 (929)
Q Consensus 588 ~~~~~vLL~GppGtGKTtLaralA~~L~--~~~~-~---------~~~~~~V~~s-~L~-~--~~~~~~~~~l~~~f~~a 651 (929)
...+.++|+||+|+||||++|.++...- ..+. . ..-+...... ++. + ....+. ..+.++++.+
T Consensus 23 ~~g~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q~~~l~~~~~~~d~l~~~~s~~~~e~-~~~~~iL~~~ 101 (199)
T cd03283 23 EKKNGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELPPVKIFTSIRVSDDLRDGISYFYAEL-RRLKEIVEKA 101 (199)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcccceEEEeccchhccccccChHHHHH-HHHHHHHHhc
Confidence 3346789999999999999999986441 1110 0 0001111111 111 1 111222 3466666666
Q ss_pred HhcCCcEEEEcccc
Q 002386 652 LDHAPSIVIFDNLD 665 (929)
Q Consensus 652 ~~~~PsVL~LDEiD 665 (929)
....|.++++||.-
T Consensus 102 ~~~~p~llllDEp~ 115 (199)
T cd03283 102 KKGEPVLFLLDEIF 115 (199)
T ss_pred cCCCCeEEEEeccc
Confidence 44589999999973
No 461
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.95 E-value=0.00096 Score=80.93 Aligned_cols=51 Identities=27% Similarity=0.404 Sum_probs=43.2
Q ss_pred CccCCCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHcC
Q 002386 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACS 903 (929)
Q Consensus 841 ~~w~dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~g 903 (929)
..|++|.|.+.+++.|...+.. -+.+..+|||||+|+|||++|+++|+...
T Consensus 14 ~~f~~viGq~~~~~~L~~~i~~------------~~l~hayLf~Gp~G~GKtt~A~~lAk~l~ 64 (614)
T PRK14971 14 STFESVVGQEALTTTLKNAIAT------------NKLAHAYLFCGPRGVGKTTCARIFAKTIN 64 (614)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc------------CCCCeeEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999887752 24566799999999999999999999753
No 462
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=96.95 E-value=0.0014 Score=66.41 Aligned_cols=36 Identities=33% Similarity=0.398 Sum_probs=30.5
Q ss_pred ceeEEecCCCCcHHHHHHHHHHHc---CCceEEEecccc
Q 002386 879 SNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPEL 914 (929)
Q Consensus 879 sGiLLyGpPGtGKT~LA~alA~e~---glnfIsVkg~EL 914 (929)
..||++|++||||+++|+++-..+ +.+||+|+++.+
T Consensus 23 ~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~ 61 (168)
T PF00158_consen 23 LPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAAL 61 (168)
T ss_dssp S-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS
T ss_pred CCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhh
Confidence 679999999999999999999876 468999999754
No 463
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=96.94 E-value=0.00065 Score=72.14 Aligned_cols=79 Identities=19% Similarity=0.328 Sum_probs=55.3
Q ss_pred CceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccccccCchh-hHHHHHHHHHHHHH--------hcCCcEEE
Q 002386 590 PGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGP-IIRQALSNFISEAL--------DHAPSIVI 660 (929)
Q Consensus 590 ~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~~~~~~-~~~~~l~~~f~~a~--------~~~PsVL~ 660 (929)
...+||.||.|.||+.||+-+-+.-...+.....|+.|+|..+.+...- ..-..++..|.-|. .....+||
T Consensus 208 r~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfghvkgaftga~~~r~gllrsadggmlf 287 (531)
T COG4650 208 RAPILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGHVKGAFTGARESREGLLRSADGGMLF 287 (531)
T ss_pred cCCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhhhccccccchhhhhhhhccCCCceEe
Confidence 3569999999999999999987655455556678999999999876532 12222333333332 12356999
Q ss_pred Eccccccc
Q 002386 661 FDNLDSII 668 (929)
Q Consensus 661 LDEiD~L~ 668 (929)
|||+..|.
T Consensus 288 ldeigelg 295 (531)
T COG4650 288 LDEIGELG 295 (531)
T ss_pred hHhhhhcC
Confidence 99998874
No 464
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.91 E-value=0.0078 Score=67.51 Aligned_cols=46 Identities=20% Similarity=0.255 Sum_probs=33.9
Q ss_pred CCCCCceEEEECCCCcHHHHHHHHHHHHhccCc---cceeeEEEEeccc
Q 002386 586 HLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHK---DLVAHIVFVCCSR 631 (929)
Q Consensus 586 ~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~---~~~~~~~~V~~s~ 631 (929)
|++.+.-++|+|+||||||+++-.+|....... .....++|+++..
T Consensus 98 Gi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~ 146 (317)
T PRK04301 98 GIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEG 146 (317)
T ss_pred CccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCC
Confidence 467777799999999999999999987653221 1124678888765
No 465
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.91 E-value=0.012 Score=66.07 Aligned_cols=104 Identities=22% Similarity=0.350 Sum_probs=68.3
Q ss_pred CCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccccccC------chh--------hHHHHHHHHHHHHH
Q 002386 587 LPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLE------KGP--------IIRQALSNFISEAL 652 (929)
Q Consensus 587 ~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~~~------~~~--------~~~~~l~~~f~~a~ 652 (929)
+-++.-+||-|.||.|||||+-.+|..+.... .+.||+..+-... ..+ -.+..+++++....
T Consensus 90 ~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~----~vLYVsGEES~~QiklRA~RL~~~~~~l~l~aEt~~e~I~~~l~ 165 (456)
T COG1066 90 LVPGSVILIGGDPGIGKSTLLLQVAARLAKRG----KVLYVSGEESLQQIKLRADRLGLPTNNLYLLAETNLEDIIAELE 165 (456)
T ss_pred cccccEEEEccCCCCCHHHHHHHHHHHHHhcC----cEEEEeCCcCHHHHHHHHHHhCCCccceEEehhcCHHHHHHHHH
Confidence 34455699999999999999999999887543 5788887542111 110 12345677888888
Q ss_pred hcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHH
Q 002386 653 DHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMD 695 (929)
Q Consensus 653 ~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld 695 (929)
..+|+++++|-|..++...-+ ....+-...+..+..|.+.-+
T Consensus 166 ~~~p~lvVIDSIQT~~s~~~~-SapGsVsQVRe~t~~L~~~AK 207 (456)
T COG1066 166 QEKPDLVVIDSIQTLYSEEIT-SAPGSVSQVREVAAELMRLAK 207 (456)
T ss_pred hcCCCEEEEeccceeeccccc-CCCCcHHHHHHHHHHHHHHHH
Confidence 899999999999999852111 112233344555665655443
No 466
>PTZ00035 Rad51 protein; Provisional
Probab=96.90 E-value=0.0097 Score=67.16 Aligned_cols=84 Identities=13% Similarity=0.124 Sum_probs=50.5
Q ss_pred CCCCCceEEEECCCCcHHHHHHHHHHHHhccC---ccceeeEEEEecccccc-Cch------------------------
Q 002386 586 HLPLPGHILIHGPPGSGKTSLAKAVAKSLEHH---KDLVAHIVFVCCSRLSL-EKG------------------------ 637 (929)
Q Consensus 586 ~~~~~~~vLL~GppGtGKTtLaralA~~L~~~---~~~~~~~~~V~~s~L~~-~~~------------------------ 637 (929)
|++.+.-+.|+|+||||||+++..+|...... ......++|++...... ...
T Consensus 114 Gi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri~~ia~~~g~~~~~~l~nI~~~~~~ 193 (337)
T PTZ00035 114 GIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERIVQIAERFGLDPEDVLDNIAYARAY 193 (337)
T ss_pred CCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHHHHHHHHhCCChHhHhhceEEEccC
Confidence 56767778899999999999999998654311 11124566777654211 100
Q ss_pred --hhHHHHHHHHHHHHHhcCCcEEEEcccccccc
Q 002386 638 --PIIRQALSNFISEALDHAPSIVIFDNLDSIIS 669 (929)
Q Consensus 638 --~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~ 669 (929)
......+..+........+.+|+||-+-.++.
T Consensus 194 ~~e~~~~~l~~~~~~l~~~~~~lvVIDSital~r 227 (337)
T PTZ00035 194 NHEHQMQLLSQAAAKMAEERFALLIVDSATALFR 227 (337)
T ss_pred CHHHHHHHHHHHHHHhhccCccEEEEECcHHhhh
Confidence 11111222222222345788999999998874
No 467
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=96.90 E-value=0.00048 Score=80.57 Aligned_cols=41 Identities=27% Similarity=0.567 Sum_probs=35.1
Q ss_pred eeEEecCCCCcHHHHHHHHHHHc-----CCceEEEecccccccccC
Q 002386 880 NVLLYGPPGCGKTHIVGAAAAAC-----SLRFISVKGPELLNKYIG 920 (929)
Q Consensus 880 GiLLyGpPGtGKT~LA~alA~e~-----glnfIsVkg~ELl~kyIG 920 (929)
+++||||||||||+|+.|+|.++ +.+++.+.+.++++.++.
T Consensus 132 ~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~ 177 (440)
T PRK14088 132 PLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVD 177 (440)
T ss_pred eEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHH
Confidence 58999999999999999999886 567888888888877753
No 468
>PRK13948 shikimate kinase; Provisional
Probab=96.90 E-value=0.001 Score=68.33 Aligned_cols=34 Identities=32% Similarity=0.277 Sum_probs=31.5
Q ss_pred CCceeEEecCCCCcHHHHHHHHHHHcCCceEEEe
Q 002386 877 LRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVK 910 (929)
Q Consensus 877 ~~sGiLLyGpPGtGKT~LA~alA~e~glnfIsVk 910 (929)
++..|+|.|++|||||++++.+|+.+|..||..+
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D 42 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALMLHFIDTD 42 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC
Confidence 4578999999999999999999999999999875
No 469
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=96.89 E-value=0.001 Score=78.77 Aligned_cols=50 Identities=24% Similarity=0.306 Sum_probs=42.8
Q ss_pred CccCCCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHc
Q 002386 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC 902 (929)
Q Consensus 841 ~~w~dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~ 902 (929)
..|+++.|.+.+++.|...+.- -+.+..+|||||+|||||++|+++|+..
T Consensus 11 ~~fdeiiGqe~v~~~L~~~I~~------------grl~hayLf~Gp~G~GKTt~Ar~LAk~L 60 (535)
T PRK08451 11 KHFDELIGQESVSKTLSLALDN------------NRLAHAYLFSGLRGSGKTSSARIFARAL 60 (535)
T ss_pred CCHHHccCcHHHHHHHHHHHHc------------CCCCeeEEEECCCCCcHHHHHHHHHHHh
Confidence 5899999999999999887752 1455678999999999999999999886
No 470
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.89 E-value=0.006 Score=62.03 Aligned_cols=29 Identities=31% Similarity=0.400 Sum_probs=25.0
Q ss_pred CCCCceEEEECCCCcHHHHHHHHHHHHhc
Q 002386 587 LPLPGHILIHGPPGSGKTSLAKAVAKSLE 615 (929)
Q Consensus 587 ~~~~~~vLL~GppGtGKTtLaralA~~L~ 615 (929)
+.++..+.|.|++|+|||||++.++..+.
T Consensus 23 i~~Ge~~~i~G~nGsGKStLl~~l~G~~~ 51 (173)
T cd03230 23 VEKGEIYGLLGPNGAGKTTLIKIILGLLK 51 (173)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45566799999999999999999998754
No 471
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.88 E-value=0.0061 Score=66.58 Aligned_cols=30 Identities=27% Similarity=0.307 Sum_probs=25.4
Q ss_pred CCCCCceEEEECCCCcHHHHHHHHHHHHhc
Q 002386 586 HLPLPGHILIHGPPGSGKTSLAKAVAKSLE 615 (929)
Q Consensus 586 ~~~~~~~vLL~GppGtGKTtLaralA~~L~ 615 (929)
|++++.-++|.|+||+|||+++..+|..+.
T Consensus 26 G~~~g~~~~i~g~~G~GKT~l~~~~~~~~~ 55 (271)
T cd01122 26 GLRKGELIILTAGTGVGKTTFLREYALDLI 55 (271)
T ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 456667799999999999999999988764
No 472
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.88 E-value=0.0022 Score=69.84 Aligned_cols=73 Identities=22% Similarity=0.355 Sum_probs=46.3
Q ss_pred ceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEE-eccccccCc------hhhHHHHHHHHHHHHHhcCCcEEEEcc
Q 002386 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFV-CCSRLSLEK------GPIIRQALSNFISEALDHAPSIVIFDN 663 (929)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V-~~s~L~~~~------~~~~~~~l~~~f~~a~~~~PsVL~LDE 663 (929)
+.++|.|++|+||||+++++...+.... ..++.+ +..++.... .......+.+.+..+....|++++++|
T Consensus 81 GlilisG~tGSGKTT~l~all~~i~~~~---~~iitiEdp~E~~~~~~~q~~v~~~~~~~~~~~l~~~lR~~PD~i~vgE 157 (264)
T cd01129 81 GIILVTGPTGSGKTTTLYSALSELNTPE---KNIITVEDPVEYQIPGINQVQVNEKAGLTFARGLRAILRQDPDIIMVGE 157 (264)
T ss_pred CEEEEECCCCCcHHHHHHHHHhhhCCCC---CeEEEECCCceecCCCceEEEeCCcCCcCHHHHHHHHhccCCCEEEecc
Confidence 5699999999999999999988875322 122222 111211100 011112356677777778999999999
Q ss_pred ccc
Q 002386 664 LDS 666 (929)
Q Consensus 664 iD~ 666 (929)
+..
T Consensus 158 iR~ 160 (264)
T cd01129 158 IRD 160 (264)
T ss_pred CCC
Confidence 943
No 473
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.87 E-value=0.011 Score=75.68 Aligned_cols=154 Identities=16% Similarity=0.197 Sum_probs=84.1
Q ss_pred ceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccccc----------------cC------------chhhHHH
Q 002386 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLS----------------LE------------KGPIIRQ 642 (929)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~----------------~~------------~~~~~~~ 642 (929)
+-++|+||+|.||||++...+...+ ....+.++..+-. .. .......
T Consensus 33 ~~~~v~apaG~GKTtl~~~~~~~~~-----~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (903)
T PRK04841 33 RLVLVTSPAGYGKTTLISQWAAGKN-----NLGWYSLDESDNQPERFASYLIAALQQATNGHCSKSEALAQKRQYASLSS 107 (903)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhCC-----CeEEEecCcccCCHHHHHHHHHHHHHHhcCcccchhhhhhccCCcCCHHH
Confidence 4599999999999999999886532 1223334322200 00 0011122
Q ss_pred HHHHHHHHHHh-cCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCCCcEEEEEecCCCCc
Q 002386 643 ALSNFISEALD-HAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEK 721 (929)
Q Consensus 643 ~l~~~f~~a~~-~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~VivIattn~~~~ 721 (929)
.+..++..... ..|.+|+|||++.+-. ..+..++..++..... ++.+|.++.....
T Consensus 108 ~~~~~~~~l~~~~~~~~lvlDD~h~~~~--------------~~~~~~l~~l~~~~~~---------~~~lv~~sR~~~~ 164 (903)
T PRK04841 108 LFAQLFIELADWHQPLYLVIDDYHLITN--------------PEIHEAMRFFLRHQPE---------NLTLVVLSRNLPP 164 (903)
T ss_pred HHHHHHHHHhcCCCCEEEEEeCcCcCCC--------------hHHHHHHHHHHHhCCC---------CeEEEEEeCCCCC
Confidence 33334443332 5788999999988731 0223334333433221 2444445544222
Q ss_pred ccc-ccccCCCcceEeeCC----CCcHHHHHHHHHHHHhhcccccCHHHHHHHHhhcCCCCh
Q 002386 722 IPQ-SLTSSGRFDFHVQLP----APAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDA 778 (929)
Q Consensus 722 L~~-~L~~~~Rf~~~i~l~----~Pd~~eR~~IL~~~l~~~~~~~~d~~l~~LA~~teG~s~ 778 (929)
++- .+... +..+.+. +.+.++-.+++...+ +..++++.+..+.+.|+|+..
T Consensus 165 ~~~~~l~~~---~~~~~l~~~~l~f~~~e~~~ll~~~~---~~~~~~~~~~~l~~~t~Gwp~ 220 (903)
T PRK04841 165 LGIANLRVR---DQLLEIGSQQLAFDHQEAQQFFDQRL---SSPIEAAESSRLCDDVEGWAT 220 (903)
T ss_pred CchHhHHhc---CcceecCHHhCCCCHHHHHHHHHhcc---CCCCCHHHHHHHHHHhCChHH
Confidence 221 11111 1233444 678888888876543 455788888899999999754
No 474
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=96.87 E-value=0.0086 Score=64.15 Aligned_cols=42 Identities=24% Similarity=0.403 Sum_probs=31.2
Q ss_pred CCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEec
Q 002386 586 HLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (929)
Q Consensus 586 ~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~ 629 (929)
|++++.-++|.|+||+|||+++..++..+....+ .++.++++
T Consensus 9 Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g--~~vly~s~ 50 (242)
T cd00984 9 GLQPGDLIIIAARPSMGKTAFALNIAENIAKKQG--KPVLFFSL 50 (242)
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCC--CceEEEeC
Confidence 5777777999999999999999998877654322 34555553
No 475
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=96.86 E-value=0.0037 Score=74.29 Aligned_cols=33 Identities=33% Similarity=0.476 Sum_probs=28.6
Q ss_pred cCCCCCceEEEECCCCcHHHHHHHHHHHHhccC
Q 002386 585 YHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHH 617 (929)
Q Consensus 585 ~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~ 617 (929)
+.++++..+||.|++|||||+|.|++|.-....
T Consensus 414 ~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g 446 (604)
T COG4178 414 FEVRPGERLLITGESGAGKTSLLRALAGLWPWG 446 (604)
T ss_pred eeeCCCCEEEEECCCCCCHHHHHHHHhccCccC
Confidence 457778889999999999999999999977543
No 476
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.85 E-value=0.0012 Score=77.63 Aligned_cols=56 Identities=18% Similarity=0.257 Sum_probs=42.1
Q ss_pred ccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccC
Q 002386 553 VSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHH 617 (929)
Q Consensus 553 ~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~ 617 (929)
|.+..|++++++.+.+.+...... + .....-++|.||||+|||+|++.||+.+...
T Consensus 75 F~d~yGlee~ieriv~~l~~Aa~g--------l-~~~~~IL~LvGPpG~GKSsLa~~la~~le~~ 130 (644)
T PRK15455 75 FEEFYGMEEAIEQIVSYFRHAAQG--------L-EEKKQILYLLGPVGGGKSSLAERLKSLMERV 130 (644)
T ss_pred hhcccCcHHHHHHHHHHHHHHHHh--------c-CCCCceEEEecCCCCCchHHHHHHHHHHHhC
Confidence 456789999999999988422211 1 1123468999999999999999999988744
No 477
>KOG1808 consensus AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=96.85 E-value=0.0018 Score=84.72 Aligned_cols=141 Identities=17% Similarity=0.169 Sum_probs=76.4
Q ss_pred ceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccccccCch----hhHHHHHHHHHHHHHhcCCcEEEEccccc
Q 002386 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKG----PIIRQALSNFISEALDHAPSIVIFDNLDS 666 (929)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~~~~~----~~~~~~l~~~f~~a~~~~PsVL~LDEiD~ 666 (929)
..+||-||.|||||.+++.+|+..+.+.....+....+..++.+.+. +.+.-.-..+... ...++.++||+++.
T Consensus 441 ~pillqG~tssGKtsii~~la~~~g~~~vrinnhehtd~qeyig~y~~~~~g~l~freg~LV~A--lr~G~~~vlD~lnl 518 (1856)
T KOG1808|consen 441 FPILLQGPTSSGKTSIIKELARATGKNIVRINNHEHTDLQEYIGTYVADDNGDLVFREGVLVQA--LRNGDWIVLDELNL 518 (1856)
T ss_pred CCeEEecCcCcCchhHHHHHHHHhccCceehhccccchHHHHHHhhhcCCCCCeeeehhHHHHH--HHhCCEEEeccccc
Confidence 35999999999999999999999985433333333333333333221 1111111112222 24567999999976
Q ss_pred cccCCCCCCCCCCchhHHHHHHHHHHHHHHhc-----ccccCccCCCcEEEEEecCCCCcc------ccccccCCCcceE
Q 002386 667 IISSSSDPEGSQPSTSVIALTKFLVDIMDEYG-----EKRKSSCGIGPIAFVASAQSLEKI------PQSLTSSGRFDFH 735 (929)
Q Consensus 667 L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~-----~~~~~~~~~~~VivIattn~~~~L------~~~L~~~~Rf~~~ 735 (929)
.. ..+++.|.++++.-. ............++++|-|.+..+ ..++++ ||. .
T Consensus 519 a~---------------~dvL~aLnrllddnRel~ipe~~rlv~~h~~f~lfatqn~~~~y~grk~lsRa~~~--rf~-e 580 (1856)
T KOG1808|consen 519 AP---------------HDVLEALNRLLDDNRELFIPETQRLVKAHPEFMLFATQNPPGTYGGRKILSRALRN--RFI-E 580 (1856)
T ss_pred cc---------------hHHHHHHHhhhhhhccccccccceeeccCcchhhhhhccCccccchhhhhhhcccc--cch-h
Confidence 54 256677777776522 111111222345666666665433 344444 555 3
Q ss_pred eeCCCCcHHHHHHHHH
Q 002386 736 VQLPAPAASERKAILE 751 (929)
Q Consensus 736 i~l~~Pd~~eR~~IL~ 751 (929)
++|-.-..++...|+.
T Consensus 581 ~~f~~~~e~e~~~i~~ 596 (1856)
T KOG1808|consen 581 LHFDDIGEEELEEILE 596 (1856)
T ss_pred hhhhhcCchhhhhhhc
Confidence 3444444455555554
No 478
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.85 E-value=0.0027 Score=64.47 Aligned_cols=31 Identities=29% Similarity=0.490 Sum_probs=26.6
Q ss_pred CCCCCceEEEECCCCcHHHHHHHHHHHHhcc
Q 002386 586 HLPLPGHILIHGPPGSGKTSLAKAVAKSLEH 616 (929)
Q Consensus 586 ~~~~~~~vLL~GppGtGKTtLaralA~~L~~ 616 (929)
.++++..+.|.||+|+|||||++.++..+..
T Consensus 24 ~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~ 54 (171)
T cd03228 24 TIKPGEKVAIVGPSGSGKSTLLKLLLRLYDP 54 (171)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHcCCCC
Confidence 3566678999999999999999999997653
No 479
>PRK05973 replicative DNA helicase; Provisional
Probab=96.85 E-value=0.017 Score=61.71 Aligned_cols=31 Identities=29% Similarity=0.364 Sum_probs=26.3
Q ss_pred CCCCCceEEEECCCCcHHHHHHHHHHHHhcc
Q 002386 586 HLPLPGHILIHGPPGSGKTSLAKAVAKSLEH 616 (929)
Q Consensus 586 ~~~~~~~vLL~GppGtGKTtLaralA~~L~~ 616 (929)
|++++.-+||.|+||+|||+++-.++.....
T Consensus 60 Gl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~ 90 (237)
T PRK05973 60 QLKPGDLVLLGARPGHGKTLLGLELAVEAMK 90 (237)
T ss_pred CCCCCCEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 5777778999999999999999988876643
No 480
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=96.85 E-value=0.00081 Score=62.78 Aligned_cols=41 Identities=27% Similarity=0.535 Sum_probs=30.3
Q ss_pred eEEecCCCCcHHHHHHHHHHHcC--------CceEE-EecccccccccCh
Q 002386 881 VLLYGPPGCGKTHIVGAAAAACS--------LRFIS-VKGPELLNKYIGA 921 (929)
Q Consensus 881 iLLyGpPGtGKT~LA~alA~e~g--------lnfIs-Vkg~ELl~kyIG~ 921 (929)
|.||||||||||++|+.+|+.+. -.++. -.+.+..+.|.|+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~~~~~~~~vy~~~~~~~~w~gY~~q 50 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHIGEPTKDSVYTRNPGDKFWDGYQGQ 50 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHhccCCCCcEEeCCCccchhhccCCC
Confidence 57999999999999999887664 23443 3445777777765
No 481
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=96.83 E-value=0.00068 Score=65.59 Aligned_cols=35 Identities=34% Similarity=0.628 Sum_probs=30.0
Q ss_pred ceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccccc
Q 002386 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLS 633 (929)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~ 633 (929)
.+||++|-|||||||++..+|+.++ +.+++++++.
T Consensus 8 PNILvtGTPG~GKstl~~~lae~~~--------~~~i~isd~v 42 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEKTG--------LEYIEISDLV 42 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHHhC--------CceEehhhHH
Confidence 3599999999999999999998866 6677887765
No 482
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.83 E-value=0.0074 Score=61.33 Aligned_cols=29 Identities=34% Similarity=0.552 Sum_probs=25.1
Q ss_pred CCCCceEEEECCCCcHHHHHHHHHHHHhc
Q 002386 587 LPLPGHILIHGPPGSGKTSLAKAVAKSLE 615 (929)
Q Consensus 587 ~~~~~~vLL~GppGtGKTtLaralA~~L~ 615 (929)
+.++..+.|.||+|+|||||++.++..+.
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~~l~G~~~ 53 (173)
T cd03246 25 IEPGESLAIIGPSGSGKSTLARLILGLLR 53 (173)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHhccC
Confidence 45556799999999999999999998764
No 483
>PRK14974 cell division protein FtsY; Provisional
Probab=96.82 E-value=0.014 Score=65.54 Aligned_cols=39 Identities=26% Similarity=0.343 Sum_probs=29.2
Q ss_pred CceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccc
Q 002386 590 PGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSR 631 (929)
Q Consensus 590 ~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~ 631 (929)
+.-++|+|++|+||||++..+|..+.... ..+..+++..
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~~~g---~~V~li~~Dt 178 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLKKNG---FSVVIAAGDT 178 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcC---CeEEEecCCc
Confidence 46699999999999999999998886432 2344455543
No 484
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.82 E-value=0.0052 Score=61.30 Aligned_cols=74 Identities=26% Similarity=0.366 Sum_probs=45.8
Q ss_pred CCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEecccccc---------------CchhhHHHHHHHHHHHH
Q 002386 587 LPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSL---------------EKGPIIRQALSNFISEA 651 (929)
Q Consensus 587 ~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~~---------------~~~~~~~~~l~~~f~~a 651 (929)
+.++..+.|.|++|+||||++++++..+....+ .++++...+.. -+.|+ ++++ .+..+
T Consensus 22 i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G----~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~-~~r~--~l~~~ 94 (157)
T cd00267 22 LKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSG----EILIDGKDIAKLPLEELRRRIGYVPQLSGGQ-RQRV--ALARA 94 (157)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcc----EEEECCEEcccCCHHHHHhceEEEeeCCHHH-HHHH--HHHHH
Confidence 455567999999999999999999987653322 22232221110 11222 2222 34455
Q ss_pred HhcCCcEEEEcccccc
Q 002386 652 LDHAPSIVIFDNLDSI 667 (929)
Q Consensus 652 ~~~~PsVL~LDEiD~L 667 (929)
....|.++++||...=
T Consensus 95 l~~~~~i~ilDEp~~~ 110 (157)
T cd00267 95 LLLNPDLLLLDEPTSG 110 (157)
T ss_pred HhcCCCEEEEeCCCcC
Confidence 5578999999998543
No 485
>PHA00729 NTP-binding motif containing protein
Probab=96.82 E-value=0.00081 Score=70.83 Aligned_cols=24 Identities=25% Similarity=0.398 Sum_probs=22.5
Q ss_pred eeEEecCCCCcHHHHHHHHHHHcC
Q 002386 880 NVLLYGPPGCGKTHIVGAAAAACS 903 (929)
Q Consensus 880 GiLLyGpPGtGKT~LA~alA~e~g 903 (929)
+++++|+||||||+||.++|.+++
T Consensus 19 nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 19 SAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 799999999999999999999865
No 486
>PRK00131 aroK shikimate kinase; Reviewed
Probab=96.81 E-value=0.0011 Score=66.92 Aligned_cols=27 Identities=30% Similarity=0.475 Sum_probs=24.7
Q ss_pred CCceEEEECCCCcHHHHHHHHHHHHhc
Q 002386 589 LPGHILIHGPPGSGKTSLAKAVAKSLE 615 (929)
Q Consensus 589 ~~~~vLL~GppGtGKTtLaralA~~L~ 615 (929)
.+..++|+|+|||||||+|+++|+.++
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~ 29 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLG 29 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 456799999999999999999999987
No 487
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=96.81 E-value=0.0098 Score=62.87 Aligned_cols=30 Identities=30% Similarity=0.535 Sum_probs=24.7
Q ss_pred CCCCceEEEECCCCcHHHHHHHHHHHHhcc
Q 002386 587 LPLPGHILIHGPPGSGKTSLAKAVAKSLEH 616 (929)
Q Consensus 587 ~~~~~~vLL~GppGtGKTtLaralA~~L~~ 616 (929)
++.+.-+.|.||+||||||+.|+|-+.+..
T Consensus 24 I~~gef~vliGpSGsGKTTtLkMINrLiep 53 (309)
T COG1125 24 IEEGEFLVLIGPSGSGKTTTLKMINRLIEP 53 (309)
T ss_pred ecCCeEEEEECCCCCcHHHHHHHHhcccCC
Confidence 445566889999999999999999887653
No 488
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=96.79 E-value=0.0018 Score=70.81 Aligned_cols=74 Identities=27% Similarity=0.442 Sum_probs=45.2
Q ss_pred CceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEE-eccccc--cCc-----hhhHHHHHHHHHHHHHhcCCcEEEE
Q 002386 590 PGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFV-CCSRLS--LEK-----GPIIRQALSNFISEALDHAPSIVIF 661 (929)
Q Consensus 590 ~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V-~~s~L~--~~~-----~~~~~~~l~~~f~~a~~~~PsVL~L 661 (929)
.++++++|++||||||++++++.++.... ..++.+ +..++. +.. ...-...+.+++..+....|+++++
T Consensus 127 ~~~ili~G~tGSGKTT~l~all~~i~~~~---~~iv~iEd~~E~~l~~~~~~~~~~~~~~~~~~~~l~~~LR~~pD~iii 203 (270)
T PF00437_consen 127 RGNILISGPTGSGKTTLLNALLEEIPPED---ERIVTIEDPPELRLPGPNQIQIQTRRDEISYEDLLKSALRQDPDVIII 203 (270)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHCHTTT---SEEEEEESSS-S--SCSSEEEEEEETTTBSHHHHHHHHTTS--SEEEE
T ss_pred ceEEEEECCCccccchHHHHHhhhccccc---cceEEeccccceeecccceEEEEeecCcccHHHHHHHHhcCCCCcccc
Confidence 37899999999999999999999886541 122222 222221 000 0011223556677777789999999
Q ss_pred ccccc
Q 002386 662 DNLDS 666 (929)
Q Consensus 662 DEiD~ 666 (929)
+|+..
T Consensus 204 gEiR~ 208 (270)
T PF00437_consen 204 GEIRD 208 (270)
T ss_dssp SCE-S
T ss_pred cccCC
Confidence 99943
No 489
>PRK10536 hypothetical protein; Provisional
Probab=96.78 E-value=0.0061 Score=65.38 Aligned_cols=23 Identities=35% Similarity=0.443 Sum_probs=21.0
Q ss_pred ceEEEECCCCcHHHHHHHHHHHH
Q 002386 591 GHILIHGPPGSGKTSLAKAVAKS 613 (929)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~ 613 (929)
..++++||+|||||+||.+++.+
T Consensus 75 ~lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 75 QLIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 35999999999999999999985
No 490
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=96.78 E-value=0.0011 Score=65.59 Aligned_cols=29 Identities=28% Similarity=0.416 Sum_probs=26.2
Q ss_pred eEEecCCCCcHHHHHHHHHHHcCCceEEE
Q 002386 881 VLLYGPPGCGKTHIVGAAAAACSLRFISV 909 (929)
Q Consensus 881 iLLyGpPGtGKT~LA~alA~e~glnfIsV 909 (929)
++|.|+||+|||++|+.+++.++..++..
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i~~ 30 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFIDG 30 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEEeC
Confidence 67899999999999999999998887764
No 491
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.78 E-value=0.0057 Score=60.30 Aligned_cols=73 Identities=23% Similarity=0.337 Sum_probs=45.7
Q ss_pred CCCCCceEEEECCCCcHHHHHHHHHHHHhccCccce-----eeEEEEeccccccCchhhHHHHHHHHHHHHHhcCCcEEE
Q 002386 586 HLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLV-----AHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVI 660 (929)
Q Consensus 586 ~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~-----~~~~~V~~s~L~~~~~~~~~~~l~~~f~~a~~~~PsVL~ 660 (929)
.+.++..+.|.|++|+|||||+++++..+....+.. ..+.++. .-+.++. +++ .+..|....|.+++
T Consensus 22 ~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~-----~lS~G~~-~rv--~laral~~~p~ill 93 (144)
T cd03221 22 TINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFE-----QLSGGEK-MRL--ALAKLLLENPNLLL 93 (144)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEc-----cCCHHHH-HHH--HHHHHHhcCCCEEE
Confidence 355667799999999999999999998764332211 0111111 1222322 222 34556668999999
Q ss_pred Eccccc
Q 002386 661 FDNLDS 666 (929)
Q Consensus 661 LDEiD~ 666 (929)
+||-..
T Consensus 94 lDEP~~ 99 (144)
T cd03221 94 LDEPTN 99 (144)
T ss_pred EeCCcc
Confidence 999754
No 492
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=96.77 E-value=0.01 Score=69.50 Aligned_cols=177 Identities=18% Similarity=0.152 Sum_probs=90.7
Q ss_pred ccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEecccc
Q 002386 553 VSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRL 632 (929)
Q Consensus 553 ~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L 632 (929)
+.++.|.+.++.-|.= .++.........+..++.--+|+|.|.||+|||-++++.+.-+.. -+|++...-
T Consensus 344 ~PsIyGhe~VK~GilL---~LfGGv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR-------~vYtsGkaS 413 (764)
T KOG0480|consen 344 FPSIYGHELVKAGILL---SLFGGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPR-------SVYTSGKAS 413 (764)
T ss_pred CccccchHHHHhhHHH---HHhCCccccCCCCccccCCceEEEeCCCCccHHHHHHHHhccCCc-------ceEecCccc
Confidence 3456677766655532 122211111112222333347999999999999999999986542 233332211
Q ss_pred c--cCchhhHHHH-HHHHHHHHH---hcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhc----cccc
Q 002386 633 S--LEKGPIIRQA-LSNFISEAL---DHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG----EKRK 702 (929)
Q Consensus 633 ~--~~~~~~~~~~-l~~~f~~a~---~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~----~~~~ 702 (929)
. |-...-++.- -.+..-+|- -....|-.|||+|.+-- +-...+...|+.-. ...-
T Consensus 414 SaAGLTaaVvkD~esgdf~iEAGALmLADnGICCIDEFDKMd~---------------~dqvAihEAMEQQtISIaKAGv 478 (764)
T KOG0480|consen 414 SAAGLTAAVVKDEESGDFTIEAGALMLADNGICCIDEFDKMDV---------------KDQVAIHEAMEQQTISIAKAGV 478 (764)
T ss_pred ccccceEEEEecCCCCceeeecCcEEEccCceEEechhcccCh---------------HhHHHHHHHHHhheehheecce
Confidence 0 1100000000 000000110 01245888999999731 11123444444321 0000
Q ss_pred CccCCCcEEEEEecCCCC-------------ccccccccCCCcceE-eeCCCCcHHHHHHHHHHHHhh
Q 002386 703 SSCGIGPIAFVASAQSLE-------------KIPQSLTSSGRFDFH-VQLPAPAASERKAILEHEIQR 756 (929)
Q Consensus 703 ~~~~~~~VivIattn~~~-------------~L~~~L~~~~Rf~~~-i~l~~Pd~~eR~~IL~~~l~~ 756 (929)
.+.-..+..++|++|+.. .+.+++++ |||.. |-+..|+...-..|-++.+..
T Consensus 479 ~aTLnARtSIlAAANPv~GhYdR~ktl~eNi~msApimS--RFDL~FiLlD~~nE~~D~~ia~hIld~ 544 (764)
T KOG0480|consen 479 VATLNARTSILAAANPVGGHYDRKKTLRENINMSAPIMS--RFDLFFILLDDCNEVVDYAIARHILDL 544 (764)
T ss_pred EEeecchhhhhhhcCCcCCccccccchhhhcCCCchhhh--hhcEEEEEecCCchHHHHHHHHHHHHH
Confidence 000011346788888754 25688888 99955 477889888877777776654
No 493
>PHA02624 large T antigen; Provisional
Probab=96.76 E-value=0.0022 Score=75.70 Aligned_cols=39 Identities=28% Similarity=0.432 Sum_probs=34.3
Q ss_pred CCCCceeEEecCCCCcHHHHHHHHHHHcCCceEEEeccc
Q 002386 875 LRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPE 913 (929)
Q Consensus 875 lr~~sGiLLyGpPGtGKT~LA~alA~e~glnfIsVkg~E 913 (929)
+.-+..+|||||||||||++|.++++.+|...++|++|.
T Consensus 428 iPKk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt 466 (647)
T PHA02624 428 VPKRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPP 466 (647)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCc
Confidence 334568999999999999999999999988899998775
No 494
>COG1485 Predicted ATPase [General function prediction only]
Probab=96.75 E-value=0.0048 Score=68.16 Aligned_cols=31 Identities=26% Similarity=0.235 Sum_probs=26.4
Q ss_pred CCCCceEEEECCCCcHHHHHHHHHHHHhccC
Q 002386 587 LPLPGHILIHGPPGSGKTSLAKAVAKSLEHH 617 (929)
Q Consensus 587 ~~~~~~vLL~GppGtGKTtLaralA~~L~~~ 617 (929)
-.+++|+.|||+-|+|||+|.-..-+.+.-.
T Consensus 62 ~~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~~ 92 (367)
T COG1485 62 HGPVRGLYLWGGVGRGKTMLMDLFYESLPGE 92 (367)
T ss_pred CCCCceEEEECCCCccHHHHHHHHHhhCCcc
Confidence 4467899999999999999999998887643
No 495
>PRK13531 regulatory ATPase RavA; Provisional
Probab=96.75 E-value=0.0019 Score=75.05 Aligned_cols=28 Identities=32% Similarity=0.422 Sum_probs=24.8
Q ss_pred CCceeEEecCCCCcHHHHHHHHHHHcCC
Q 002386 877 LRSNVLLYGPPGCGKTHIVGAAAAACSL 904 (929)
Q Consensus 877 ~~sGiLLyGpPGtGKT~LA~alA~e~gl 904 (929)
.+.++||+||||||||++|+++|...+.
T Consensus 38 ag~hVLL~GpPGTGKT~LAraLa~~~~~ 65 (498)
T PRK13531 38 SGESVFLLGPPGIAKSLIARRLKFAFQN 65 (498)
T ss_pred cCCCEEEECCCChhHHHHHHHHHHHhcc
Confidence 3578999999999999999999997653
No 496
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.75 E-value=0.0075 Score=61.60 Aligned_cols=27 Identities=30% Similarity=0.506 Sum_probs=22.8
Q ss_pred CCCCCceEEEECCCCcHHHHHHHHHHH
Q 002386 586 HLPLPGHILIHGPPGSGKTSLAKAVAK 612 (929)
Q Consensus 586 ~~~~~~~vLL~GppGtGKTtLaralA~ 612 (929)
.++++.-+.|.||+|+|||||++++..
T Consensus 17 ~i~~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 17 SIPLNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhh
Confidence 356667799999999999999999863
No 497
>PRK13946 shikimate kinase; Provisional
Probab=96.75 E-value=0.0013 Score=67.78 Aligned_cols=34 Identities=26% Similarity=0.383 Sum_probs=30.7
Q ss_pred CCceeEEecCCCCcHHHHHHHHHHHcCCceEEEe
Q 002386 877 LRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVK 910 (929)
Q Consensus 877 ~~sGiLLyGpPGtGKT~LA~alA~e~glnfIsVk 910 (929)
....|+|.|+||||||++|+.+|+.+|++|+..+
T Consensus 9 ~~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D 42 (184)
T PRK13946 9 GKRTVVLVGLMGAGKSTVGRRLATMLGLPFLDAD 42 (184)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCeECcC
Confidence 3456999999999999999999999999999865
No 498
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.75 E-value=0.0018 Score=63.13 Aligned_cols=23 Identities=61% Similarity=1.029 Sum_probs=21.6
Q ss_pred EEEECCCCcHHHHHHHHHHHHhc
Q 002386 593 ILIHGPPGSGKTSLAKAVAKSLE 615 (929)
Q Consensus 593 vLL~GppGtGKTtLaralA~~L~ 615 (929)
++++|+|||||||+|+.+++.++
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
Confidence 78999999999999999999876
No 499
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.74 E-value=0.019 Score=66.75 Aligned_cols=65 Identities=22% Similarity=0.292 Sum_probs=39.9
Q ss_pred hHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccc
Q 002386 561 TTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSR 631 (929)
Q Consensus 561 ~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~ 631 (929)
..++.+.+.+..++......+. .. ..|..++|+|++|+||||++..+|..+.... ..+..++|..
T Consensus 69 ~~~~~v~~~L~~~l~~~~~~~~--~~-~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g---~kV~lV~~D~ 133 (437)
T PRK00771 69 HVIKIVYEELVKLLGEETEPLV--LP-LKPQTIMLVGLQGSGKTTTAAKLARYFKKKG---LKVGLVAADT 133 (437)
T ss_pred HHHHHHHHHHHHHhCCCccccc--cC-CCCeEEEEECCCCCcHHHHHHHHHHHHHHcC---CeEEEecCCC
Confidence 3445555555444443221111 11 3467799999999999999999999886442 3444555543
No 500
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=96.74 E-value=0.00077 Score=78.76 Aligned_cols=41 Identities=29% Similarity=0.557 Sum_probs=35.1
Q ss_pred ceeEEecCCCCcHHHHHHHHHHHc---CCceEEEeccccccccc
Q 002386 879 SNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKYI 919 (929)
Q Consensus 879 sGiLLyGpPGtGKT~LA~alA~e~---glnfIsVkg~ELl~kyI 919 (929)
.+++||||||||||+|++|+|.+. |.+++.+...++.+.++
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~ 185 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLV 185 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHH
Confidence 468999999999999999999865 78888898887776654
Done!