Query 002386
Match_columns 929
No_of_seqs 421 out of 3105
Neff 7.5
Searched_HMMs 29240
Date Tue Mar 26 00:15:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002386.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002386hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cf2_A TER ATPase, transitiona 100.0 3E-59 1E-63 567.6 34.3 356 550-928 200-561 (806)
2 1ypw_A Transitional endoplasmi 100.0 2.1E-39 7.1E-44 400.7 24.7 356 550-928 200-561 (806)
3 4b4t_J 26S protease regulatory 100.0 1.5E-37 5E-42 349.3 21.2 249 550-826 144-392 (405)
4 4b4t_I 26S protease regulatory 100.0 8.8E-37 3E-41 343.5 22.1 252 548-827 176-427 (437)
5 4b4t_M 26S protease regulatory 100.0 1.8E-36 6.3E-41 345.5 20.4 254 549-830 176-429 (434)
6 1wlf_A PEX1, peroxisome biogen 100.0 1.2E-36 4.2E-41 306.6 14.6 163 1-172 13-179 (179)
7 4b4t_L 26S protease subunit RP 100.0 7.3E-36 2.5E-40 340.9 21.7 249 550-826 177-425 (437)
8 3cf2_A TER ATPase, transitiona 100.0 8.5E-36 2.9E-40 362.3 22.0 260 550-826 473-746 (806)
9 4b4t_H 26S protease regulatory 100.0 8.8E-36 3E-40 338.5 20.6 249 549-825 204-452 (467)
10 4b4t_K 26S protease regulatory 100.0 3.1E-35 1.1E-39 335.2 22.5 247 549-823 167-414 (428)
11 3hu3_A Transitional endoplasmi 100.0 1.5E-30 5.2E-35 303.7 31.5 276 552-850 202-483 (489)
12 2x8a_A Nuclear valosin-contain 100.0 1.2E-28 4.2E-33 267.6 19.0 260 551-829 7-270 (274)
13 1xwi_A SKD1 protein; VPS4B, AA 100.0 3.6E-28 1.2E-32 270.2 22.7 227 550-797 8-235 (322)
14 3eie_A Vacuolar protein sortin 100.0 4.6E-28 1.6E-32 269.4 20.5 227 550-797 14-240 (322)
15 2qp9_X Vacuolar protein sortin 100.0 1.1E-27 3.9E-32 269.8 20.8 257 550-827 47-335 (355)
16 3cf0_A Transitional endoplasmi 99.9 9.4E-28 3.2E-32 264.4 15.6 260 550-826 11-284 (301)
17 2ce7_A Cell division protein F 99.9 1.6E-27 5.6E-32 276.0 18.0 248 550-826 12-259 (476)
18 2qz4_A Paraplegin; AAA+, SPG7, 99.9 3E-26 1E-30 246.1 22.6 250 551-827 3-253 (262)
19 3h4m_A Proteasome-activating n 99.9 3.5E-26 1.2E-30 249.1 20.3 249 550-826 13-261 (285)
20 2zan_A Vacuolar protein sortin 99.9 1.3E-26 4.6E-31 268.5 15.7 226 550-796 130-356 (444)
21 1lv7_A FTSH; alpha/beta domain 99.9 1.7E-25 5.9E-30 240.3 22.1 245 550-823 8-252 (257)
22 3b9p_A CG5977-PA, isoform A; A 99.9 9.7E-25 3.3E-29 239.3 22.5 259 550-827 17-276 (297)
23 2dhr_A FTSH; AAA+ protein, hex 99.9 1.5E-25 5.1E-30 261.1 15.2 247 550-826 27-274 (499)
24 3d8b_A Fidgetin-like protein 1 99.9 1.3E-24 4.5E-29 245.0 21.4 257 551-827 81-338 (357)
25 3vfd_A Spastin; ATPase, microt 99.9 1.7E-24 5.9E-29 246.9 20.9 256 550-825 111-367 (389)
26 1r6b_X CLPA protein; AAA+, N-t 99.9 2.9E-24 1E-28 265.6 20.9 320 552-917 184-527 (758)
27 1ixz_A ATP-dependent metallopr 99.9 8.9E-24 3E-28 226.5 21.5 241 550-820 12-253 (254)
28 2r62_A Cell division protease 99.9 6.2E-26 2.1E-30 245.1 -0.7 252 551-829 8-259 (268)
29 1iy2_A ATP-dependent metallopr 99.9 8.5E-23 2.9E-27 222.1 21.0 241 550-820 36-277 (278)
30 3pxi_A Negative regulator of g 99.9 6.4E-23 2.2E-27 253.4 19.3 315 552-921 178-567 (758)
31 1ypw_A Transitional endoplasmi 99.9 5E-25 1.7E-29 272.4 -0.1 260 550-826 473-746 (806)
32 1qvr_A CLPB protein; coiled co 99.9 1.6E-22 5.4E-27 252.7 18.6 204 552-791 168-391 (854)
33 4b4t_J 26S protease regulatory 99.9 1.2E-22 4.2E-27 228.3 8.2 90 839-928 143-232 (405)
34 3t15_A Ribulose bisphosphate c 99.8 4.9E-21 1.7E-25 209.9 13.9 184 585-783 31-222 (293)
35 4b4t_I 26S protease regulatory 99.8 1.9E-21 6.4E-26 219.2 8.2 90 839-928 177-266 (437)
36 4b4t_H 26S protease regulatory 99.8 2.8E-21 9.4E-26 219.8 7.9 90 839-928 204-293 (467)
37 4b4t_L 26S protease subunit RP 99.8 5.5E-21 1.9E-25 218.3 8.5 90 839-928 176-265 (437)
38 4b4t_M 26S protease regulatory 99.8 6.6E-21 2.3E-25 217.4 8.3 90 839-928 176-265 (434)
39 4b4t_K 26S protease regulatory 99.8 1E-20 3.4E-25 215.8 8.2 90 839-928 167-256 (428)
40 3syl_A Protein CBBX; photosynt 99.8 1.9E-19 6.6E-24 198.1 16.0 220 555-797 32-267 (309)
41 3uk6_A RUVB-like 2; hexameric 99.7 5.4E-17 1.9E-21 182.9 18.8 221 552-824 42-331 (368)
42 3cmw_A Protein RECA, recombina 99.7 1.5E-18 5.2E-23 223.9 4.0 90 839-928 1015-1151(1706)
43 2c9o_A RUVB-like 1; hexameric 99.7 1.1E-18 3.9E-23 202.9 0.3 206 552-787 35-262 (456)
44 3pfi_A Holliday junction ATP-d 99.7 4.8E-16 1.6E-20 173.3 20.9 217 552-821 27-252 (338)
45 1d2n_A N-ethylmaleimide-sensit 99.7 3.6E-16 1.2E-20 169.1 17.3 206 555-789 34-246 (272)
46 1ofh_A ATP-dependent HSL prote 99.7 5E-16 1.7E-20 170.3 18.0 251 555-823 16-299 (310)
47 3hws_A ATP-dependent CLP prote 99.7 6.6E-16 2.2E-20 174.2 17.4 253 556-821 17-347 (363)
48 4akg_A Glutathione S-transfera 99.6 7E-16 2.4E-20 207.3 15.0 293 590-912 1267-1643(2695)
49 3m6a_A ATP-dependent protease 99.6 1E-15 3.4E-20 181.5 14.7 231 555-821 82-339 (543)
50 1hqc_A RUVB; extended AAA-ATPa 99.6 3.9E-15 1.4E-19 164.5 18.4 200 552-792 10-218 (324)
51 4fcw_A Chaperone protein CLPB; 99.6 1.5E-14 5E-19 159.0 20.5 214 555-797 18-283 (311)
52 2x8a_A Nuclear valosin-contain 99.6 3.2E-16 1.1E-20 169.8 6.8 90 839-928 5-94 (274)
53 1xwi_A SKD1 protein; VPS4B, AA 99.6 5.3E-16 1.8E-20 172.1 8.3 89 839-928 7-96 (322)
54 3cf0_A Transitional endoplasmi 99.6 3.3E-16 1.1E-20 172.2 5.3 89 840-928 11-99 (301)
55 2chg_A Replication factor C sm 99.6 3.1E-14 1.1E-18 147.0 19.7 191 553-789 16-208 (226)
56 3te6_A Regulatory protein SIR3 99.6 1.2E-14 4.2E-19 159.7 16.2 226 556-820 22-312 (318)
57 3bos_A Putative DNA replicatio 99.6 1E-14 3.5E-19 153.2 15.0 183 590-820 52-240 (242)
58 2v1u_A Cell division control p 99.6 1.3E-14 4.4E-19 163.8 16.1 228 554-823 19-276 (387)
59 2z4s_A Chromosomal replication 99.6 7.4E-15 2.5E-19 169.8 14.3 199 590-824 130-333 (440)
60 3pvs_A Replication-associated 99.6 1.8E-14 6.2E-19 166.5 17.4 208 552-822 24-243 (447)
61 1njg_A DNA polymerase III subu 99.6 1.7E-14 5.9E-19 150.8 15.6 189 553-789 22-232 (250)
62 3pxi_A Negative regulator of g 99.5 7.8E-14 2.7E-18 172.2 20.7 213 554-796 491-728 (758)
63 3u61_B DNA polymerase accessor 99.5 1.1E-13 3.8E-18 153.2 19.9 187 552-788 24-219 (324)
64 1l8q_A Chromosomal replication 99.5 5.9E-14 2E-18 155.6 17.1 173 590-791 37-214 (324)
65 3eie_A Vacuolar protein sortin 99.5 4.6E-15 1.6E-19 164.5 6.8 88 840-928 14-101 (322)
66 2qby_B CDC6 homolog 3, cell di 99.5 6.7E-14 2.3E-18 158.2 15.3 220 554-824 20-271 (384)
67 2qp9_X Vacuolar protein sortin 99.5 7E-15 2.4E-19 165.3 6.6 88 840-928 47-134 (355)
68 1sxj_D Activator 1 41 kDa subu 99.5 1E-13 3.4E-18 154.9 15.8 194 552-790 35-240 (353)
69 1jbk_A CLPB protein; beta barr 99.5 2.8E-14 9.5E-19 143.9 9.7 162 553-750 21-194 (195)
70 1um8_A ATP-dependent CLP prote 99.5 1.9E-13 6.4E-18 154.8 17.2 220 589-822 71-364 (376)
71 1g41_A Heat shock protein HSLU 99.5 3.3E-13 1.1E-17 154.3 19.1 134 657-796 252-411 (444)
72 1fnn_A CDC6P, cell division co 99.5 4.4E-13 1.5E-17 151.5 19.5 224 554-823 17-274 (389)
73 1r6b_X CLPA protein; AAA+, N-t 99.5 4.4E-13 1.5E-17 165.6 20.4 211 555-796 459-719 (758)
74 1in4_A RUVB, holliday junction 99.5 9.1E-13 3.1E-17 146.8 20.8 217 553-822 24-249 (334)
75 3pxg_A Negative regulator of g 99.5 7E-14 2.4E-18 162.9 11.2 190 552-792 178-385 (468)
76 2r44_A Uncharacterized protein 99.5 6.8E-13 2.3E-17 147.4 18.7 215 554-824 27-298 (331)
77 1iqp_A RFCS; clamp loader, ext 99.5 6.1E-13 2.1E-17 146.7 18.1 190 553-788 24-215 (327)
78 2qby_A CDC6 homolog 1, cell di 99.5 3.5E-13 1.2E-17 151.8 16.1 227 554-824 20-273 (386)
79 1sxj_A Activator 1 95 kDa subu 99.5 2.6E-13 9E-18 160.1 15.2 201 552-787 37-254 (516)
80 1g8p_A Magnesium-chelatase 38 99.5 2.7E-13 9.3E-18 151.3 14.5 142 656-825 145-324 (350)
81 1sxj_B Activator 1 37 kDa subu 99.4 1.5E-12 5.3E-17 143.1 19.1 191 553-789 20-213 (323)
82 2bjv_A PSP operon transcriptio 99.4 8.9E-13 3E-17 141.7 16.7 205 552-792 4-240 (265)
83 2zan_A Vacuolar protein sortin 99.4 3E-14 1E-18 164.9 5.4 89 839-928 129-218 (444)
84 2chq_A Replication factor C sm 99.4 3E-13 1E-17 148.5 12.3 191 552-788 15-207 (319)
85 1jr3_A DNA polymerase III subu 99.4 1.8E-12 6.1E-17 145.9 18.1 189 553-789 15-225 (373)
86 3h4m_A Proteasome-activating n 99.4 1.5E-13 5.1E-18 149.2 8.1 90 839-928 12-101 (285)
87 2p65_A Hypothetical protein PF 99.4 5.4E-13 1.8E-17 134.1 10.5 155 553-742 21-187 (187)
88 3nbx_X ATPase RAVA; AAA+ ATPas 99.4 8.9E-13 3E-17 153.8 13.4 194 591-817 42-280 (500)
89 1qvr_A CLPB protein; coiled co 99.4 2.6E-12 9E-17 160.5 18.3 216 554-797 558-824 (854)
90 2qz4_A Paraplegin; AAA+, SPG7, 99.4 4.5E-13 1.5E-17 143.2 8.8 88 840-928 2-89 (262)
91 1sxj_E Activator 1 40 kDa subu 99.4 5E-12 1.7E-16 141.4 17.1 196 552-789 12-241 (354)
92 1ojl_A Transcriptional regulat 99.4 2.9E-12 1E-16 140.8 14.2 199 555-790 3-233 (304)
93 3b9p_A CG5977-PA, isoform A; A 99.4 4.5E-13 1.5E-17 146.4 7.5 88 840-928 17-104 (297)
94 1lv7_A FTSH; alpha/beta domain 99.4 5.5E-13 1.9E-17 142.6 7.8 89 839-928 7-95 (257)
95 3d8b_A Fidgetin-like protein 1 99.4 4.9E-13 1.7E-17 150.4 7.5 88 840-928 80-167 (357)
96 3hu3_A Transitional endoplasmi 99.4 3.8E-13 1.3E-17 157.0 6.7 88 841-928 201-288 (489)
97 4akg_A Glutathione S-transfera 99.4 4.1E-12 1.4E-16 171.2 17.5 262 591-902 646-947 (2695)
98 2ce7_A Cell division protein F 99.3 1.4E-12 4.9E-17 151.0 9.9 89 839-928 11-99 (476)
99 1sxj_C Activator 1 40 kDa subu 99.3 1.8E-11 6.1E-16 136.6 16.5 178 553-775 24-203 (340)
100 3vkg_A Dynein heavy chain, cyt 99.3 1.2E-11 4.1E-16 167.3 16.9 303 590-912 1304-1680(3245)
101 3vfd_A Spastin; ATPase, microt 99.3 2.4E-12 8.1E-17 146.5 7.4 88 840-928 111-198 (389)
102 2r62_A Cell division protease 99.3 9.2E-13 3.2E-17 141.7 3.5 88 839-927 6-93 (268)
103 1a5t_A Delta prime, HOLB; zinc 99.2 5.7E-11 1.9E-15 132.3 16.1 178 557-785 5-205 (334)
104 2dhr_A FTSH; AAA+ protein, hex 99.2 1.1E-11 3.7E-16 144.5 9.8 88 840-928 27-114 (499)
105 1w5s_A Origin recognition comp 99.2 1.4E-10 4.9E-15 132.0 18.8 214 554-794 22-275 (412)
106 3cmw_A Protein RECA, recombina 99.2 4.1E-10 1.4E-14 146.0 21.4 157 550-718 1016-1217(1706)
107 1ixz_A ATP-dependent metallopr 99.2 2.9E-11 1E-15 128.9 8.5 89 839-928 11-99 (254)
108 3f9v_A Minichromosome maintena 99.2 5.2E-12 1.8E-16 151.0 2.9 199 589-821 326-585 (595)
109 2c9o_A RUVB-like 1; hexameric 99.2 3.6E-11 1.2E-15 139.6 9.5 80 840-928 33-114 (456)
110 3n70_A Transport activator; si 99.1 6.9E-11 2.4E-15 115.2 9.0 88 555-668 2-89 (145)
111 2yuj_A Ubiquitin fusion degrad 99.1 1.1E-09 3.7E-14 109.2 15.6 150 13-170 40-190 (190)
112 1g41_A Heat shock protein HSLU 99.1 8.5E-11 2.9E-15 134.4 7.4 86 843-928 14-102 (444)
113 3co5_A Putative two-component 99.1 6E-11 2.1E-15 115.3 5.1 111 555-718 5-115 (143)
114 1iy2_A ATP-dependent metallopr 99.1 1.8E-10 6.1E-15 124.7 8.2 87 840-927 36-122 (278)
115 3t15_A Ribulose bisphosphate c 99.0 9.3E-11 3.2E-15 128.1 4.3 56 873-928 31-86 (293)
116 2gno_A DNA polymerase III, gam 99.0 1.2E-09 4.2E-14 119.7 12.4 130 591-754 19-152 (305)
117 3vkg_A Dynein heavy chain, cyt 99.0 6.7E-09 2.3E-13 141.0 20.9 134 591-751 605-750 (3245)
118 3k1j_A LON protease, ATP-depen 99.0 4.8E-09 1.6E-13 126.0 16.3 123 655-794 201-357 (604)
119 3cmu_A Protein RECA, recombina 99.0 2.8E-10 9.7E-15 148.8 6.0 98 818-918 655-775 (2050)
120 3cmu_A Protein RECA, recombina 98.9 5.8E-09 2E-13 136.6 15.5 81 586-669 1077-1173(2050)
121 3syl_A Protein CBBX; photosynt 98.9 9.6E-10 3.3E-14 120.4 6.4 85 843-928 30-124 (309)
122 2qen_A Walker-type ATPase; unk 98.8 4.5E-07 1.5E-11 100.3 22.4 187 554-786 12-247 (350)
123 3hws_A ATP-dependent CLP prote 98.7 1E-08 3.6E-13 115.2 5.2 82 846-927 17-102 (363)
124 1ny5_A Transcriptional regulat 98.7 2.2E-07 7.6E-12 105.3 16.1 201 555-791 138-369 (387)
125 3dzd_A Transcriptional regulat 98.6 4.5E-07 1.6E-11 102.0 16.5 197 555-790 130-359 (368)
126 2fna_A Conserved hypothetical 98.6 1.8E-06 6.3E-11 95.5 21.1 167 591-787 31-252 (357)
127 3ec2_A DNA replication protein 98.6 8.2E-08 2.8E-12 96.5 8.3 77 587-667 35-112 (180)
128 2krk_A 26S protease regulatory 98.6 1.9E-08 6.6E-13 88.7 2.9 79 736-826 6-84 (86)
129 1um8_A ATP-dependent CLP prote 98.6 5E-08 1.7E-12 110.1 6.9 78 845-922 22-117 (376)
130 3tiw_A Transitional endoplasmi 98.6 2.1E-06 7.1E-11 86.5 17.8 157 3-169 26-185 (187)
131 2kjq_A DNAA-related protein; s 98.6 1.4E-07 4.8E-12 92.2 8.9 62 589-668 35-96 (149)
132 1ofh_A ATP-dependent HSL prote 98.5 4.8E-08 1.6E-12 106.5 5.4 79 844-922 15-95 (310)
133 3uk6_A RUVB-like 2; hexameric 98.5 1.5E-07 5.2E-12 105.5 9.1 76 841-924 41-118 (368)
134 1cz4_A VCP-like ATPase; double 98.5 6E-07 2E-11 90.6 12.4 150 13-173 21-177 (185)
135 3kw6_A 26S protease regulatory 98.5 5.5E-08 1.9E-12 84.2 4.0 74 739-824 1-74 (78)
136 1sxj_A Activator 1 95 kDa subu 98.5 8E-08 2.7E-12 113.1 5.7 82 841-922 36-121 (516)
137 2vhj_A Ntpase P4, P4; non- hyd 98.4 5.5E-07 1.9E-11 98.2 8.9 76 586-669 119-196 (331)
138 3qwz_A Transitional endoplasmi 98.4 3.8E-06 1.3E-10 86.2 14.3 161 3-173 29-192 (211)
139 3m6a_A ATP-dependent protease 98.4 1.5E-07 5.2E-12 111.3 4.4 80 841-927 78-166 (543)
140 1d2n_A N-ethylmaleimide-sensit 98.3 3.8E-07 1.3E-11 98.0 6.5 52 869-923 55-106 (272)
141 1jbk_A CLPB protein; beta barr 98.3 5.5E-07 1.9E-11 89.9 7.2 74 841-927 19-104 (195)
142 3vlf_B 26S protease regulatory 98.3 2.2E-07 7.5E-12 82.3 2.8 75 742-828 2-76 (88)
143 2r2a_A Uncharacterized protein 98.3 6.2E-07 2.1E-11 91.9 6.3 131 592-743 7-155 (199)
144 3f8t_A Predicted ATPase involv 98.3 1E-05 3.4E-10 92.2 16.4 192 592-822 241-482 (506)
145 2w58_A DNAI, primosome compone 98.3 7.7E-07 2.6E-11 90.9 6.8 73 591-668 55-128 (202)
146 3aji_B S6C, proteasome (prosom 98.3 2.7E-07 9.4E-12 80.7 2.7 75 742-828 2-76 (83)
147 1jr3_D DNA polymerase III, del 98.3 9.3E-06 3.2E-10 90.2 15.5 165 591-789 19-189 (343)
148 2p65_A Hypothetical protein PF 98.2 9.4E-07 3.2E-11 88.1 6.3 74 841-927 19-104 (187)
149 3pfi_A Holliday junction ATP-d 98.2 1.1E-06 3.8E-11 97.3 7.1 66 841-914 26-91 (338)
150 3pxg_A Negative regulator of g 98.2 1.4E-06 4.8E-11 101.2 6.6 71 841-927 177-257 (468)
151 1tue_A Replication protein E1; 98.2 2.5E-06 8.4E-11 87.0 7.5 29 587-615 55-83 (212)
152 3n70_A Transport activator; si 98.1 3.1E-06 1.1E-10 82.0 6.0 60 846-917 3-65 (145)
153 3u61_B DNA polymerase accessor 98.0 5.3E-06 1.8E-10 91.3 7.8 61 841-913 23-83 (324)
154 3co5_A Putative two-component 98.0 7.9E-07 2.7E-11 86.0 1.0 62 845-918 5-66 (143)
155 1hqc_A RUVB; extended AAA-ATPa 98.0 3.1E-06 1.1E-10 92.9 5.7 66 841-914 9-74 (324)
156 2qgz_A Helicase loader, putati 98.0 5.6E-06 1.9E-10 90.8 6.4 73 590-667 152-226 (308)
157 1zc1_A Ubiquitin fusion degrad 98.0 6.8E-05 2.3E-09 75.8 13.6 153 15-175 47-203 (208)
158 1tf7_A KAIC; homohexamer, hexa 97.9 9.2E-05 3.2E-09 87.2 16.2 38 874-911 277-317 (525)
159 1l8q_A Chromosomal replication 97.9 8.8E-06 3E-10 89.6 6.5 73 841-924 8-86 (324)
160 2r44_A Uncharacterized protein 97.9 8E-06 2.7E-10 90.1 5.9 54 843-911 26-79 (331)
161 4fcw_A Chaperone protein CLPB; 97.9 1.4E-05 4.7E-10 87.1 7.0 70 843-916 16-88 (311)
162 2bjv_A PSP operon transcriptio 97.9 1.2E-05 4.1E-10 85.8 6.3 63 841-914 3-68 (265)
163 3pvs_A Replication-associated 97.9 1.8E-05 6.3E-10 91.1 8.0 60 841-913 23-85 (447)
164 1svm_A Large T antigen; AAA+ f 97.8 1.8E-05 6.2E-10 88.9 7.0 121 585-740 164-284 (377)
165 3ec2_A DNA replication protein 97.8 1.8E-05 6.1E-10 79.2 6.2 45 875-919 35-83 (180)
166 1g8p_A Magnesium-chelatase 38 97.8 1.2E-05 4.2E-10 89.0 5.2 51 840-903 20-70 (350)
167 2chg_A Replication factor C sm 97.8 3.5E-05 1.2E-09 78.6 7.4 62 841-915 14-80 (226)
168 1u0j_A DNA replication protein 97.7 2.7E-05 9.2E-10 82.9 6.5 28 588-615 102-129 (267)
169 3te6_A Regulatory protein SIR3 97.7 9.4E-06 3.2E-10 89.0 3.0 42 876-917 43-94 (318)
170 1in4_A RUVB, holliday junction 97.7 2.4E-05 8.3E-10 86.6 6.1 67 841-915 22-88 (334)
171 2dzn_B 26S protease regulatory 97.7 3.6E-06 1.2E-10 73.4 -0.9 69 744-824 1-69 (82)
172 3bos_A Putative DNA replicatio 97.7 6.8E-05 2.3E-09 77.8 8.0 65 841-918 25-95 (242)
173 2w0m_A SSO2452; RECA, SSPF, un 97.7 0.0002 6.9E-09 73.9 11.5 30 586-615 19-48 (235)
174 1ye8_A Protein THEP1, hypothet 97.7 0.00018 6.2E-09 72.2 10.7 24 592-615 2-25 (178)
175 1sxj_D Activator 1 41 kDa subu 97.6 6.6E-05 2.3E-09 83.1 7.8 61 841-914 34-100 (353)
176 2w58_A DNAI, primosome compone 97.6 7.1E-05 2.4E-09 76.1 7.4 40 879-918 55-97 (202)
177 2chq_A Replication factor C sm 97.6 3.4E-05 1.2E-09 84.0 4.7 62 841-915 14-80 (319)
178 1ojl_A Transcriptional regulat 97.6 5.8E-05 2E-09 82.5 6.3 60 845-915 3-65 (304)
179 2cvh_A DNA repair and recombin 97.6 0.00028 9.4E-09 72.4 10.9 40 586-631 16-55 (220)
180 1n0w_A DNA repair protein RAD5 97.6 0.00036 1.2E-08 72.7 11.8 84 586-669 20-133 (243)
181 1iqp_A RFCS; clamp loader, ext 97.6 6.5E-05 2.2E-09 82.0 6.2 61 841-914 22-87 (327)
182 1svm_A Large T antigen; AAA+ f 97.5 5.1E-05 1.8E-09 85.2 5.3 65 848-913 130-204 (377)
183 2qby_B CDC6 homolog 3, cell di 97.5 6.4E-05 2.2E-09 84.3 5.9 62 844-914 20-92 (384)
184 2v1u_A Cell division control p 97.5 8.7E-05 3E-09 82.9 6.6 63 843-914 18-89 (387)
185 2z4s_A Chromosomal replication 97.5 3.8E-05 1.3E-09 88.4 3.7 46 878-923 130-180 (440)
186 3hr8_A Protein RECA; alpha and 97.5 0.00034 1.2E-08 77.8 11.0 81 586-669 57-153 (356)
187 3nbx_X ATPase RAVA; AAA+ ATPas 97.5 4.3E-05 1.5E-09 89.0 3.8 62 846-922 24-92 (500)
188 1sxj_B Activator 1 37 kDa subu 97.5 9.7E-05 3.3E-09 80.5 6.3 61 841-914 18-83 (323)
189 1sxj_C Activator 1 40 kDa subu 97.4 0.00011 3.9E-09 81.3 6.2 60 841-913 22-86 (340)
190 2zr9_A Protein RECA, recombina 97.4 0.00032 1.1E-08 78.1 9.2 80 586-668 57-152 (349)
191 2qgz_A Helicase loader, putati 97.4 7.6E-05 2.6E-09 81.7 3.9 43 878-920 152-198 (308)
192 2z43_A DNA repair and recombin 97.3 0.00044 1.5E-08 76.1 9.6 84 586-669 103-217 (324)
193 2ehv_A Hypothetical protein PH 97.3 0.00069 2.3E-08 70.8 10.5 27 586-612 26-52 (251)
194 1xp8_A RECA protein, recombina 97.3 0.00076 2.6E-08 75.4 11.3 81 586-669 70-166 (366)
195 2kjq_A DNAA-related protein; s 97.3 0.00016 5.4E-09 70.4 4.6 40 877-916 35-77 (149)
196 1njg_A DNA polymerase III subu 97.3 0.00025 8.5E-09 73.0 6.4 52 841-904 20-71 (250)
197 1jr3_A DNA polymerase III subu 97.3 0.00034 1.2E-08 77.9 7.7 52 841-904 13-64 (373)
198 1u94_A RECA protein, recombina 97.3 0.00061 2.1E-08 75.9 9.6 80 586-669 59-155 (356)
199 1v5w_A DMC1, meiotic recombina 97.3 0.00099 3.4E-08 73.9 11.2 84 586-669 118-233 (343)
200 1z6t_A APAF-1, apoptotic prote 97.2 0.0017 5.8E-08 77.2 13.7 47 554-613 124-170 (591)
201 1tue_A Replication protein E1; 97.2 0.00011 3.8E-09 74.9 2.8 31 878-908 58-88 (212)
202 4a74_A DNA repair and recombin 97.2 0.00062 2.1E-08 70.2 8.6 30 586-615 21-50 (231)
203 3lda_A DNA repair protein RAD5 97.2 0.00097 3.3E-08 75.5 10.8 84 586-669 174-287 (400)
204 2qby_A CDC6 homolog 1, cell di 97.2 0.00027 9.1E-09 78.8 5.8 62 843-913 19-86 (386)
205 3vaa_A Shikimate kinase, SK; s 97.2 0.00023 7.8E-09 72.4 4.7 34 877-910 24-57 (199)
206 1fnn_A CDC6P, cell division co 97.2 0.00043 1.5E-08 77.4 7.1 64 843-915 16-85 (389)
207 1u0j_A DNA replication protein 97.2 0.00025 8.5E-09 75.4 4.8 28 877-904 103-130 (267)
208 2vhj_A Ntpase P4, P4; non- hyd 97.2 0.0002 6.8E-09 78.1 4.1 53 874-926 119-173 (331)
209 3io5_A Recombination and repai 97.2 0.0013 4.3E-08 71.6 10.3 82 586-669 25-125 (333)
210 3j16_B RLI1P; ribosome recycli 97.2 0.0011 3.7E-08 79.1 10.8 28 588-615 101-128 (608)
211 2a5y_B CED-4; apoptosis; HET: 97.1 0.0047 1.6E-07 72.9 16.1 169 558-777 132-330 (549)
212 2dr3_A UPF0273 protein PH0284; 97.1 0.0022 7.6E-08 66.7 11.2 30 586-615 19-48 (247)
213 3f9v_A Minichromosome maintena 97.1 0.00011 3.9E-09 87.5 1.0 62 845-908 296-357 (595)
214 1pzn_A RAD51, DNA repair and r 97.1 0.0016 5.6E-08 72.4 10.3 47 585-631 126-175 (349)
215 1y63_A LMAJ004144AAA protein; 97.0 0.00033 1.1E-08 70.3 3.9 33 878-910 10-43 (184)
216 2i1q_A DNA repair and recombin 97.0 0.0015 5.1E-08 71.6 9.5 84 586-669 94-218 (322)
217 1sxj_E Activator 1 40 kDa subu 97.0 0.00037 1.3E-08 77.2 4.4 50 841-902 11-60 (354)
218 3iij_A Coilin-interacting nucl 97.0 0.0004 1.4E-08 69.2 4.2 34 877-910 10-43 (180)
219 2zts_A Putative uncharacterize 97.0 0.0024 8.2E-08 66.5 10.1 28 586-613 26-53 (251)
220 2p5t_B PEZT; postsegregational 96.9 0.001 3.5E-08 70.3 6.9 40 875-914 29-68 (253)
221 2iut_A DNA translocase FTSK; n 96.9 0.0064 2.2E-07 71.3 14.0 140 591-751 215-420 (574)
222 1vma_A Cell division protein F 96.9 0.0032 1.1E-07 68.6 10.7 98 562-665 79-196 (306)
223 1qhx_A CPT, protein (chloramph 96.9 0.0011 3.7E-08 65.6 6.3 25 591-615 4-28 (178)
224 1zuh_A Shikimate kinase; alpha 96.9 0.00063 2.2E-08 66.9 4.4 32 879-910 8-39 (168)
225 2gno_A DNA polymerase III, gam 96.9 0.0011 3.7E-08 72.4 6.6 52 848-912 1-58 (305)
226 1zp6_A Hypothetical protein AT 96.9 0.00054 1.8E-08 68.7 3.9 40 875-914 6-45 (191)
227 2eyu_A Twitching motility prot 96.9 0.00061 2.1E-08 72.7 4.4 74 588-664 23-107 (261)
228 3jvv_A Twitching mobility prot 96.8 0.00057 1.9E-08 76.2 3.6 73 590-664 123-205 (356)
229 3bh0_A DNAB-like replicative h 96.8 0.011 3.7E-07 64.6 13.9 41 586-629 64-104 (315)
230 3sfz_A APAF-1, apoptotic pepti 96.8 0.0081 2.8E-07 77.5 15.0 173 554-777 124-321 (1249)
231 1cr0_A DNA primase/helicase; R 96.8 0.0064 2.2E-07 65.6 11.9 32 586-617 31-62 (296)
232 2orw_A Thymidine kinase; TMTK, 96.8 0.00068 2.3E-08 68.3 3.8 25 591-615 4-28 (184)
233 1nlf_A Regulatory protein REPA 96.8 0.0063 2.1E-07 65.1 11.6 31 586-616 26-56 (279)
234 2cdn_A Adenylate kinase; phosp 96.7 0.001 3.6E-08 67.4 4.9 31 879-909 21-51 (201)
235 2ius_A DNA translocase FTSK; n 96.7 0.014 4.8E-07 67.8 14.8 76 655-751 296-374 (512)
236 2b8t_A Thymidine kinase; deoxy 96.7 0.0038 1.3E-07 64.8 9.2 27 591-617 13-39 (223)
237 1gvn_B Zeta; postsegregational 96.7 0.0014 4.7E-08 70.9 5.9 36 876-911 31-66 (287)
238 3umf_A Adenylate kinase; rossm 96.7 0.00093 3.2E-08 69.1 4.2 39 875-915 26-64 (217)
239 3vaa_A Shikimate kinase, SK; s 96.7 0.00088 3E-08 68.0 3.6 28 588-615 23-50 (199)
240 1ak2_A Adenylate kinase isoenz 96.6 0.0012 4.1E-08 68.8 4.6 31 879-909 17-47 (233)
241 2ewv_A Twitching motility prot 96.6 0.00089 3E-08 75.2 3.7 75 587-664 133-218 (372)
242 2bwj_A Adenylate kinase 5; pho 96.6 0.00085 2.9E-08 67.6 3.2 31 879-909 13-43 (199)
243 2c95_A Adenylate kinase 1; tra 96.6 0.0013 4.5E-08 66.0 4.6 31 879-909 10-40 (196)
244 2r6a_A DNAB helicase, replicat 96.6 0.0075 2.6E-07 69.5 11.2 42 586-629 199-240 (454)
245 2p5t_B PEZT; postsegregational 96.6 0.0046 1.6E-07 65.3 8.7 40 587-632 29-68 (253)
246 3t61_A Gluconokinase; PSI-biol 96.5 0.0017 5.7E-08 65.9 4.7 31 879-909 19-49 (202)
247 3uie_A Adenylyl-sulfate kinase 96.5 0.0018 6.1E-08 65.8 4.9 37 878-914 25-64 (200)
248 3trf_A Shikimate kinase, SK; a 96.5 0.0012 4.2E-08 65.7 3.5 25 591-615 6-30 (185)
249 3upu_A ATP-dependent DNA helic 96.5 0.0023 7.8E-08 73.9 6.0 28 591-618 46-73 (459)
250 2r8r_A Sensor protein; KDPD, P 96.5 0.018 6.1E-07 59.6 12.0 28 591-618 7-34 (228)
251 1ukz_A Uridylate kinase; trans 96.5 0.0016 5.6E-08 65.9 4.2 32 879-910 16-47 (203)
252 3dm5_A SRP54, signal recogniti 96.5 0.011 3.6E-07 67.5 11.2 101 561-667 74-194 (443)
253 1knq_A Gluconate kinase; ALFA/ 96.5 0.0022 7.4E-08 63.4 4.9 34 878-911 8-41 (175)
254 2q6t_A DNAB replication FORK h 96.5 0.011 3.9E-07 67.8 11.6 42 586-629 196-237 (444)
255 1gvn_B Zeta; postsegregational 96.5 0.0058 2E-07 65.9 8.7 38 589-632 32-69 (287)
256 2rhm_A Putative kinase; P-loop 96.4 0.0015 5E-08 65.5 3.5 28 588-615 3-30 (193)
257 3tlx_A Adenylate kinase 2; str 96.4 0.0015 5.2E-08 68.7 3.7 33 877-909 28-60 (243)
258 2ga8_A Hypothetical 39.9 kDa p 96.4 0.001 3.5E-08 73.5 2.3 44 879-922 25-86 (359)
259 3k1j_A LON protease, ATP-depen 96.4 0.0019 6.5E-08 77.3 4.8 49 841-904 38-86 (604)
260 3kl4_A SRP54, signal recogniti 96.4 0.007 2.4E-07 68.9 9.3 102 560-666 69-190 (433)
261 4eun_A Thermoresistant glucoki 96.4 0.0022 7.5E-08 65.1 4.5 36 877-914 28-63 (200)
262 1a5t_A Delta prime, HOLB; zinc 96.4 0.0031 1.1E-07 69.5 6.1 28 876-903 22-49 (334)
263 3kb2_A SPBC2 prophage-derived 96.3 0.0019 6.5E-08 63.2 3.7 24 592-615 3-26 (173)
264 1y63_A LMAJ004144AAA protein; 96.3 0.0022 7.6E-08 64.2 4.3 27 589-615 9-36 (184)
265 3a4m_A L-seryl-tRNA(SEC) kinas 96.3 0.0063 2.2E-07 64.5 7.8 25 591-615 5-29 (260)
266 3iij_A Coilin-interacting nucl 96.3 0.0024 8.2E-08 63.4 4.2 26 590-615 11-36 (180)
267 2jv2_A Putative uncharacterize 96.2 0.0081 2.8E-07 51.9 6.6 74 91-171 9-82 (83)
268 1zp6_A Hypothetical protein AT 96.2 0.0017 5.9E-08 64.9 2.8 28 587-614 6-33 (191)
269 1kag_A SKI, shikimate kinase I 96.2 0.003 1E-07 62.1 4.2 25 591-615 5-29 (173)
270 4gp7_A Metallophosphoesterase; 96.2 0.0055 1.9E-07 60.6 6.1 22 587-608 6-27 (171)
271 2px0_A Flagellar biosynthesis 96.2 0.016 5.5E-07 62.8 10.1 64 562-631 81-144 (296)
272 3tif_A Uncharacterized ABC tra 96.1 0.024 8.1E-07 59.2 11.0 29 587-615 28-56 (235)
273 1via_A Shikimate kinase; struc 96.1 0.0026 8.9E-08 62.9 3.4 24 592-615 6-29 (175)
274 3rlf_A Maltose/maltodextrin im 96.1 0.023 7.9E-07 63.5 11.4 29 587-615 26-54 (381)
275 1q57_A DNA primase/helicase; d 96.1 0.032 1.1E-06 65.0 13.2 42 586-629 238-279 (503)
276 3umf_A Adenylate kinase; rossm 96.1 0.0042 1.5E-07 64.1 5.0 39 587-633 26-64 (217)
277 3r20_A Cytidylate kinase; stru 96.1 0.0036 1.2E-07 65.4 4.4 32 878-909 9-40 (233)
278 1zuh_A Shikimate kinase; alpha 96.1 0.0027 9.4E-08 62.2 3.3 25 591-615 8-32 (168)
279 3nwj_A ATSK2; P loop, shikimat 96.1 0.0035 1.2E-07 66.3 4.2 32 878-909 48-79 (250)
280 3bgw_A DNAB-like replicative h 96.1 0.035 1.2E-06 63.7 12.8 41 586-629 193-233 (444)
281 2bbw_A Adenylate kinase 4, AK4 96.0 0.0039 1.3E-07 65.4 4.5 31 878-908 27-57 (246)
282 2iyv_A Shikimate kinase, SK; t 96.0 0.0029 1E-07 62.9 3.2 24 592-615 4-27 (184)
283 2yvu_A Probable adenylyl-sulfa 96.0 0.015 5.2E-07 57.9 8.5 29 589-617 12-40 (186)
284 4eun_A Thermoresistant glucoki 96.0 0.0046 1.6E-07 62.7 4.6 27 589-615 28-54 (200)
285 3tui_C Methionine import ATP-b 96.0 0.02 6.9E-07 63.6 10.2 29 587-615 51-79 (366)
286 1knq_A Gluconate kinase; ALFA/ 96.0 0.0046 1.6E-07 61.0 4.5 26 590-615 8-33 (175)
287 3uie_A Adenylyl-sulfate kinase 96.0 0.0098 3.3E-07 60.2 6.9 28 588-615 23-50 (200)
288 3fvq_A Fe(3+) IONS import ATP- 96.0 0.028 9.5E-07 62.4 11.1 29 587-615 27-55 (359)
289 2cdn_A Adenylate kinase; phosp 96.0 0.0038 1.3E-07 63.2 3.8 25 591-615 21-45 (201)
290 2ze6_A Isopentenyl transferase 95.9 0.0037 1.3E-07 66.1 3.8 24 592-615 3-26 (253)
291 1tev_A UMP-CMP kinase; ploop, 95.9 0.0038 1.3E-07 62.3 3.7 25 591-615 4-28 (196)
292 3crm_A TRNA delta(2)-isopenten 95.9 0.018 6.1E-07 63.0 9.1 25 591-615 6-30 (323)
293 1nn5_A Similar to deoxythymidy 95.9 0.0023 7.8E-08 65.2 1.9 27 878-904 9-35 (215)
294 2wwf_A Thymidilate kinase, put 95.9 0.0025 8.5E-08 64.9 2.1 32 878-909 10-41 (212)
295 1e6c_A Shikimate kinase; phosp 95.9 0.0038 1.3E-07 61.2 3.4 24 592-615 4-27 (173)
296 2c95_A Adenylate kinase 1; tra 95.9 0.004 1.4E-07 62.3 3.6 25 591-615 10-34 (196)
297 1ly1_A Polynucleotide kinase; 95.9 0.0042 1.5E-07 61.2 3.6 22 591-612 3-24 (181)
298 3e1s_A Exodeoxyribonuclease V, 95.9 0.006 2.1E-07 72.3 5.5 27 591-617 205-231 (574)
299 1kht_A Adenylate kinase; phosp 95.8 0.0042 1.5E-07 61.8 3.5 26 591-616 4-29 (192)
300 3lw7_A Adenylate kinase relate 95.8 0.0039 1.3E-07 60.8 3.2 23 592-615 3-25 (179)
301 3cm0_A Adenylate kinase; ATP-b 95.8 0.0048 1.7E-07 61.3 3.9 25 591-615 5-29 (186)
302 2it1_A 362AA long hypothetical 95.8 0.042 1.4E-06 61.1 11.8 29 587-615 26-54 (362)
303 1w5s_A Origin recognition comp 95.8 0.013 4.3E-07 65.9 7.7 62 844-912 22-95 (412)
304 2pez_A Bifunctional 3'-phospho 95.8 0.0067 2.3E-07 60.1 4.8 25 590-614 5-29 (179)
305 1aky_A Adenylate kinase; ATP:A 95.8 0.005 1.7E-07 63.3 4.0 25 591-615 5-29 (220)
306 3t61_A Gluconokinase; PSI-biol 95.8 0.0045 1.6E-07 62.7 3.5 25 591-615 19-43 (202)
307 3gfo_A Cobalt import ATP-bindi 95.8 0.037 1.3E-06 59.2 10.8 29 587-615 31-59 (275)
308 2grj_A Dephospho-COA kinase; T 95.8 0.0055 1.9E-07 62.1 4.1 30 880-909 14-43 (192)
309 2yyz_A Sugar ABC transporter, 95.8 0.042 1.4E-06 61.0 11.5 29 587-615 26-54 (359)
310 2bwj_A Adenylate kinase 5; pho 95.7 0.0047 1.6E-07 62.0 3.4 25 591-615 13-37 (199)
311 3sr0_A Adenylate kinase; phosp 95.7 0.0041 1.4E-07 63.7 3.0 33 593-633 3-35 (206)
312 2cvh_A DNA repair and recombin 95.7 0.012 3.9E-07 60.1 6.4 40 874-913 16-55 (220)
313 2vli_A Antibiotic resistance p 95.7 0.0043 1.5E-07 61.4 3.0 25 591-615 6-30 (183)
314 1zd8_A GTP:AMP phosphotransfer 95.7 0.0046 1.6E-07 64.0 3.3 26 590-615 7-32 (227)
315 3nh6_A ATP-binding cassette SU 95.7 0.027 9.3E-07 61.2 9.4 30 586-615 76-105 (306)
316 1z47_A CYSA, putative ABC-tran 95.7 0.043 1.5E-06 60.9 11.0 29 587-615 38-66 (355)
317 2bbw_A Adenylate kinase 4, AK4 95.7 0.0058 2E-07 64.1 3.8 26 590-615 27-52 (246)
318 1nks_A Adenylate kinase; therm 95.7 0.0044 1.5E-07 61.7 2.7 25 592-616 3-27 (194)
319 2pt5_A Shikimate kinase, SK; a 95.7 0.005 1.7E-07 60.1 3.1 24 592-615 2-25 (168)
320 2pt7_A CAG-ALFA; ATPase, prote 95.7 0.0058 2E-07 67.3 3.9 72 590-665 171-250 (330)
321 1v43_A Sugar-binding transport 95.7 0.047 1.6E-06 61.0 11.3 29 587-615 34-62 (372)
322 3fb4_A Adenylate kinase; psych 95.6 0.0049 1.7E-07 63.0 3.1 23 593-615 3-25 (216)
323 3dl0_A Adenylate kinase; phosp 95.6 0.0047 1.6E-07 63.2 2.9 24 592-615 2-25 (216)
324 1qf9_A UMP/CMP kinase, protein 95.6 0.0064 2.2E-07 60.5 3.9 25 591-615 7-31 (194)
325 3a8t_A Adenylate isopentenyltr 95.6 0.0054 1.8E-07 67.4 3.5 34 880-913 42-75 (339)
326 3tlx_A Adenylate kinase 2; str 95.6 0.0067 2.3E-07 63.7 3.9 26 590-615 29-54 (243)
327 1ak2_A Adenylate kinase isoenz 95.6 0.0071 2.4E-07 62.9 4.1 25 591-615 17-41 (233)
328 4e22_A Cytidylate kinase; P-lo 95.6 0.0086 3E-07 63.2 4.8 30 879-908 28-57 (252)
329 1ukz_A Uridylate kinase; trans 95.6 0.0073 2.5E-07 61.1 4.1 25 591-615 16-40 (203)
330 1zak_A Adenylate kinase; ATP:A 95.6 0.006 2E-07 62.8 3.4 26 590-615 5-30 (222)
331 1g5t_A COB(I)alamin adenosyltr 95.5 0.035 1.2E-06 56.1 8.9 28 591-618 29-56 (196)
332 4g1u_C Hemin import ATP-bindin 95.5 0.04 1.4E-06 58.6 9.8 29 587-615 34-62 (266)
333 2plr_A DTMP kinase, probable t 95.5 0.0072 2.5E-07 61.2 3.7 26 591-616 5-30 (213)
334 2yvu_A Probable adenylyl-sulfa 95.5 0.011 3.9E-07 58.8 5.1 37 878-914 13-52 (186)
335 1g29_1 MALK, maltose transport 95.5 0.048 1.6E-06 60.9 10.6 29 587-615 26-54 (372)
336 1q3t_A Cytidylate kinase; nucl 95.5 0.0096 3.3E-07 62.0 4.6 30 879-908 17-46 (236)
337 1oxx_K GLCV, glucose, ABC tran 95.5 0.054 1.9E-06 60.0 11.0 29 587-615 28-56 (353)
338 3d31_A Sulfate/molybdate ABC t 95.4 0.065 2.2E-06 59.3 11.4 29 587-615 23-51 (348)
339 3foz_A TRNA delta(2)-isopenten 95.4 0.0095 3.2E-07 64.6 4.5 37 879-915 11-47 (316)
340 3be4_A Adenylate kinase; malar 95.4 0.0063 2.2E-07 62.5 3.0 25 591-615 6-30 (217)
341 4a1f_A DNAB helicase, replicat 95.4 0.022 7.6E-07 62.7 7.5 31 586-616 42-72 (338)
342 2j41_A Guanylate kinase; GMP, 95.4 0.0068 2.3E-07 61.3 3.1 28 587-614 3-30 (207)
343 2z0h_A DTMP kinase, thymidylat 95.4 0.019 6.6E-07 57.3 6.3 23 593-615 3-25 (197)
344 2pbr_A DTMP kinase, thymidylat 95.4 0.01 3.6E-07 59.1 4.3 23 593-615 3-25 (195)
345 2fna_A Conserved hypothetical 95.4 0.02 6.7E-07 62.7 6.9 54 843-913 12-65 (357)
346 2jaq_A Deoxyguanosine kinase; 95.3 0.0082 2.8E-07 60.4 3.3 24 592-615 2-25 (205)
347 2qor_A Guanylate kinase; phosp 95.3 0.0097 3.3E-07 60.4 3.8 27 589-615 11-37 (204)
348 1kgd_A CASK, peripheral plasma 95.3 0.01 3.5E-07 59.1 3.8 25 591-615 6-30 (180)
349 3c8u_A Fructokinase; YP_612366 95.3 0.018 6E-07 58.7 5.7 27 589-615 21-47 (208)
350 3e70_C DPA, signal recognition 95.2 0.073 2.5E-06 58.4 10.9 57 562-618 99-157 (328)
351 3thx_B DNA mismatch repair pro 95.2 0.07 2.4E-06 66.3 11.9 27 586-612 669-695 (918)
352 2wwf_A Thymidilate kinase, put 95.2 0.0086 3E-07 60.8 3.2 28 590-617 10-37 (212)
353 2qmh_A HPR kinase/phosphorylas 95.2 0.0073 2.5E-07 61.2 2.6 37 878-915 34-70 (205)
354 2grj_A Dephospho-COA kinase; T 95.2 0.0091 3.1E-07 60.4 3.3 34 592-633 14-47 (192)
355 3a8t_A Adenylate isopentenyltr 95.2 0.022 7.6E-07 62.5 6.5 25 591-615 41-65 (339)
356 1cke_A CK, MSSA, protein (cyti 95.2 0.014 4.7E-07 60.0 4.6 25 591-615 6-30 (227)
357 2fz4_A DNA repair protein RAD2 95.2 0.021 7.1E-07 59.7 6.0 24 592-615 110-133 (237)
358 1vt4_I APAF-1 related killer D 95.2 0.037 1.3E-06 69.0 8.9 43 557-613 131-173 (1221)
359 2qt1_A Nicotinamide riboside k 95.1 0.0095 3.2E-07 60.5 3.2 32 878-909 21-53 (207)
360 1e4v_A Adenylate kinase; trans 95.1 0.0084 2.9E-07 61.4 2.9 24 592-615 2-25 (214)
361 1nn5_A Similar to deoxythymidy 95.1 0.01 3.4E-07 60.4 3.4 27 590-616 9-35 (215)
362 3hr8_A Protein RECA; alpha and 95.1 0.019 6.6E-07 63.7 5.9 43 874-916 57-102 (356)
363 1uj2_A Uridine-cytidine kinase 95.1 0.01 3.6E-07 62.4 3.6 38 879-916 23-68 (252)
364 1m7g_A Adenylylsulfate kinase; 95.1 0.012 3.9E-07 60.2 3.7 37 878-914 25-65 (211)
365 2yhs_A FTSY, cell division pro 95.1 0.07 2.4E-06 61.5 10.5 31 587-617 290-320 (503)
366 3tr0_A Guanylate kinase, GMP k 95.1 0.012 4.2E-07 59.3 3.8 26 589-614 6-31 (205)
367 2xxa_A Signal recognition part 95.1 0.091 3.1E-06 59.9 11.5 74 589-664 99-192 (433)
368 1n0w_A DNA repair protein RAD5 95.1 0.014 4.8E-07 60.4 4.3 40 874-913 20-68 (243)
369 2v54_A DTMP kinase, thymidylat 95.1 0.015 5.1E-07 58.6 4.4 25 590-614 4-28 (204)
370 2if2_A Dephospho-COA kinase; a 95.1 0.0093 3.2E-07 60.3 2.8 23 592-615 3-25 (204)
371 1p9r_A General secretion pathw 95.0 0.05 1.7E-06 61.7 9.1 71 591-664 168-245 (418)
372 2xb4_A Adenylate kinase; ATP-b 95.0 0.014 4.8E-07 60.2 4.2 23 593-615 3-25 (223)
373 2qor_A Guanylate kinase; phosp 95.0 0.014 4.8E-07 59.2 4.1 27 877-903 11-37 (204)
374 3c8u_A Fructokinase; YP_612366 95.0 0.018 6.1E-07 58.7 4.9 35 877-911 21-60 (208)
375 2ga8_A Hypothetical 39.9 kDa p 95.0 0.023 7.7E-07 62.8 5.9 25 591-615 25-49 (359)
376 1w4r_A Thymidine kinase; type 95.0 0.032 1.1E-06 56.4 6.5 34 591-628 21-55 (195)
377 1htw_A HI0065; nucleotide-bind 95.0 0.014 4.7E-07 57.2 3.8 29 587-615 30-58 (158)
378 3nwj_A ATSK2; P loop, shikimat 95.0 0.01 3.6E-07 62.6 3.1 25 591-615 49-73 (250)
379 2f6r_A COA synthase, bifunctio 95.0 0.012 4.2E-07 63.1 3.8 30 879-909 76-105 (281)
380 1m7g_A Adenylylsulfate kinase; 94.9 0.012 4.2E-07 60.0 3.3 28 588-615 23-50 (211)
381 3tau_A Guanylate kinase, GMP k 94.9 0.012 4.1E-07 60.0 3.2 27 589-615 7-33 (208)
382 2w0m_A SSO2452; RECA, SSPF, un 94.8 0.012 4.2E-07 60.2 3.1 37 874-910 19-58 (235)
383 1z6g_A Guanylate kinase; struc 94.8 0.014 4.8E-07 60.1 3.5 28 587-614 20-47 (218)
384 3zvl_A Bifunctional polynucleo 94.8 0.024 8.1E-07 64.5 5.6 28 588-615 256-283 (416)
385 1tf7_A KAIC; homohexamer, hexa 94.8 0.061 2.1E-06 63.0 9.2 80 586-668 277-384 (525)
386 3r20_A Cytidylate kinase; stru 94.8 0.021 7.2E-07 59.5 4.6 25 591-615 10-34 (233)
387 1lvg_A Guanylate kinase, GMP k 94.8 0.014 5E-07 59.0 3.3 26 590-615 4-29 (198)
388 2j37_W Signal recognition part 94.7 0.1 3.5E-06 60.5 10.8 101 562-667 75-195 (504)
389 4a74_A DNA repair and recombin 94.7 0.018 6.2E-07 59.0 4.1 40 874-913 21-69 (231)
390 2ehv_A Hypothetical protein PH 94.7 0.017 5.8E-07 60.0 3.9 39 874-912 26-68 (251)
391 3zvl_A Bifunctional polynucleo 94.7 0.012 4.1E-07 67.0 2.8 32 878-909 258-289 (416)
392 2qen_A Walker-type ATPase; unk 94.7 0.037 1.3E-06 60.3 6.7 53 842-911 10-62 (350)
393 3ney_A 55 kDa erythrocyte memb 94.7 0.025 8.6E-07 57.4 4.9 32 872-903 13-44 (197)
394 1zu4_A FTSY; GTPase, signal re 94.7 0.075 2.6E-06 58.1 9.0 31 587-617 102-132 (320)
395 1j8m_F SRP54, signal recogniti 94.7 0.092 3.2E-06 56.8 9.6 72 590-664 98-189 (297)
396 2qt1_A Nicotinamide riboside k 94.7 0.018 6.2E-07 58.4 3.9 27 588-614 19-45 (207)
397 2z43_A DNA repair and recombin 94.7 0.028 9.7E-07 61.5 5.7 40 874-913 103-151 (324)
398 1uj2_A Uridine-cytidine kinase 94.6 0.024 8.3E-07 59.6 4.8 44 591-634 23-68 (252)
399 2bdt_A BH3686; alpha-beta prot 94.6 0.015 5.2E-07 58.0 3.1 23 592-614 4-26 (189)
400 3a00_A Guanylate kinase, GMP k 94.6 0.017 5.7E-07 57.8 3.3 25 591-615 2-26 (186)
401 3ice_A Transcription terminati 94.6 0.088 3E-06 58.6 9.3 30 587-616 171-200 (422)
402 1ex7_A Guanylate kinase; subst 94.6 0.017 5.9E-07 58.1 3.3 25 591-615 2-26 (186)
403 2v9p_A Replication protein E1; 94.6 0.02 6.7E-07 62.2 4.0 29 586-614 122-150 (305)
404 4e22_A Cytidylate kinase; P-lo 94.6 0.026 8.8E-07 59.5 4.8 25 591-615 28-52 (252)
405 3b9q_A Chloroplast SRP recepto 94.5 0.036 1.2E-06 60.1 6.0 31 587-617 97-127 (302)
406 3ake_A Cytidylate kinase; CMP 94.5 0.02 7E-07 57.7 3.7 24 592-615 4-27 (208)
407 1odf_A YGR205W, hypothetical 3 94.5 0.037 1.3E-06 59.6 5.9 28 589-616 30-57 (290)
408 1pzn_A RAD51, DNA repair and r 94.4 0.026 8.9E-07 62.6 4.7 42 873-914 126-176 (349)
409 1u94_A RECA protein, recombina 94.4 0.038 1.3E-06 61.4 6.0 40 874-913 59-101 (356)
410 3hdt_A Putative kinase; struct 94.4 0.021 7.3E-07 59.1 3.7 29 880-908 16-44 (223)
411 3asz_A Uridine kinase; cytidin 94.4 0.02 6.8E-07 58.1 3.3 26 590-615 6-31 (211)
412 3b6e_A Interferon-induced heli 94.4 0.095 3.3E-06 52.8 8.5 24 591-614 49-72 (216)
413 2dr3_A UPF0273 protein PH0284; 94.4 0.03 1E-06 58.0 4.7 39 874-912 19-60 (247)
414 1znw_A Guanylate kinase, GMP k 94.3 0.022 7.7E-07 57.9 3.6 29 587-615 17-45 (207)
415 3qf4_B Uncharacterized ABC tra 94.3 0.094 3.2E-06 62.4 9.4 31 585-615 376-406 (598)
416 1jjv_A Dephospho-COA kinase; P 94.3 0.019 6.5E-07 58.1 2.9 23 592-615 4-26 (206)
417 2eyu_A Twitching motility prot 94.3 0.024 8.1E-07 60.2 3.8 28 875-902 22-49 (261)
418 3ney_A 55 kDa erythrocyte memb 94.3 0.027 9.1E-07 57.2 3.9 26 590-615 19-44 (197)
419 4f4c_A Multidrug resistance pr 94.2 0.1 3.6E-06 67.8 10.4 32 585-616 439-470 (1321)
420 1x6v_B Bifunctional 3'-phospho 94.2 0.025 8.4E-07 67.3 4.2 34 879-912 53-89 (630)
421 3thx_A DNA mismatch repair pro 94.2 0.15 5.2E-06 63.5 11.4 25 588-612 660-684 (934)
422 2jeo_A Uridine-cytidine kinase 94.2 0.025 8.4E-07 59.3 3.7 29 587-615 22-50 (245)
423 2ffh_A Protein (FFH); SRP54, s 94.2 0.19 6.7E-06 56.9 11.4 38 589-629 97-134 (425)
424 3foz_A TRNA delta(2)-isopenten 94.2 0.037 1.2E-06 60.0 5.0 26 590-615 10-35 (316)
425 1s96_A Guanylate kinase, GMP k 94.1 0.027 9.1E-07 58.2 3.7 29 587-615 13-41 (219)
426 1ls1_A Signal recognition part 94.1 0.095 3.3E-06 56.6 8.2 74 589-665 97-190 (295)
427 2og2_A Putative signal recogni 94.1 0.051 1.8E-06 60.3 6.1 56 562-617 129-184 (359)
428 1rj9_A FTSY, signal recognitio 94.1 0.14 4.7E-06 55.6 9.4 29 589-617 101-129 (304)
429 2gza_A Type IV secretion syste 94.1 0.026 8.7E-07 63.0 3.7 74 588-665 173-262 (361)
430 1xx6_A Thymidine kinase; NESG, 94.0 0.055 1.9E-06 54.6 5.7 26 591-616 9-34 (191)
431 2jeo_A Uridine-cytidine kinase 94.0 0.027 9.3E-07 58.9 3.5 36 870-905 15-52 (245)
432 1v5w_A DMC1, meiotic recombina 94.0 0.059 2E-06 59.5 6.4 29 874-902 118-146 (343)
433 1htw_A HI0065; nucleotide-bind 94.0 0.034 1.2E-06 54.3 4.0 28 875-902 30-57 (158)
434 1rz3_A Hypothetical protein rb 94.0 0.048 1.6E-06 55.2 5.1 27 589-615 21-47 (201)
435 3qf4_A ABC transporter, ATP-bi 93.9 0.051 1.7E-06 64.6 6.1 31 585-615 364-394 (587)
436 2zr9_A Protein RECA, recombina 93.9 0.04 1.4E-06 61.0 4.9 40 874-913 57-99 (349)
437 2oap_1 GSPE-2, type II secreti 93.9 0.023 7.9E-07 66.3 3.0 71 590-664 260-342 (511)
438 1rz3_A Hypothetical protein rb 93.9 0.07 2.4E-06 53.9 6.3 32 878-909 22-56 (201)
439 1q3t_A Cytidylate kinase; nucl 93.9 0.041 1.4E-06 57.1 4.6 27 589-615 15-41 (236)
440 1uf9_A TT1252 protein; P-loop, 93.9 0.024 8.2E-07 56.9 2.7 23 591-613 9-31 (203)
441 3d3q_A TRNA delta(2)-isopenten 93.9 0.034 1.2E-06 61.1 4.1 25 591-615 8-32 (340)
442 1znw_A Guanylate kinase, GMP k 93.8 0.034 1.2E-06 56.5 3.8 29 875-903 17-45 (207)
443 1z6g_A Guanylate kinase; struc 93.8 0.033 1.1E-06 57.3 3.7 25 878-902 23-47 (218)
444 1ltq_A Polynucleotide kinase; 93.8 0.037 1.3E-06 59.5 4.2 24 591-614 3-26 (301)
445 3lnc_A Guanylate kinase, GMP k 93.8 0.02 6.7E-07 59.3 1.9 28 587-614 24-52 (231)
446 2qm8_A GTPase/ATPase; G protei 93.8 0.19 6.5E-06 55.3 9.9 30 587-616 52-81 (337)
447 1vht_A Dephospho-COA kinase; s 93.7 0.032 1.1E-06 57.0 3.4 24 591-615 5-28 (218)
448 1gtv_A TMK, thymidylate kinase 93.7 0.016 5.6E-07 58.8 1.2 24 593-616 3-26 (214)
449 4eaq_A DTMP kinase, thymidylat 93.7 0.045 1.5E-06 56.8 4.6 31 879-909 27-59 (229)
450 2v3c_C SRP54, signal recogniti 93.7 0.044 1.5E-06 62.5 4.8 38 590-630 99-136 (432)
451 4a82_A Cystic fibrosis transme 93.7 0.1 3.4E-06 61.9 8.0 31 585-615 362-392 (578)
452 3lda_A DNA repair protein RAD5 93.6 0.066 2.3E-06 60.4 6.0 42 873-914 173-223 (400)
453 3io5_A Recombination and repai 93.6 0.051 1.7E-06 59.0 4.8 42 874-916 25-71 (333)
454 1ny5_A Transcriptional regulat 93.6 0.058 2E-06 60.6 5.4 36 879-914 161-199 (387)
455 3tqf_A HPR(Ser) kinase; transf 93.6 0.048 1.6E-06 53.9 4.0 30 878-908 16-45 (181)
456 4eaq_A DTMP kinase, thymidylat 93.5 0.045 1.5E-06 56.8 4.1 27 590-616 26-52 (229)
457 1nlf_A Regulatory protein REPA 93.5 0.033 1.1E-06 59.5 3.1 29 874-902 26-54 (279)
458 2h92_A Cytidylate kinase; ross 93.5 0.04 1.4E-06 56.2 3.6 25 591-615 4-28 (219)
459 3b9q_A Chloroplast SRP recepto 93.4 0.051 1.7E-06 59.0 4.5 38 876-914 98-138 (302)
460 1xp8_A RECA protein, recombina 93.4 0.074 2.5E-06 59.3 5.9 40 874-913 70-112 (366)
461 1cr0_A DNA primase/helicase; R 93.4 0.043 1.5E-06 59.0 3.8 38 873-910 30-71 (296)
462 3exa_A TRNA delta(2)-isopenten 93.4 0.05 1.7E-06 59.0 4.2 25 591-615 4-28 (322)
463 4gp7_A Metallophosphoesterase; 93.3 0.033 1.1E-06 54.8 2.6 20 878-897 9-28 (171)
464 2f6r_A COA synthase, bifunctio 93.3 0.039 1.3E-06 59.2 3.3 24 591-615 76-99 (281)
465 2qmh_A HPR kinase/phosphorylas 93.3 0.029 9.9E-07 56.8 2.1 25 591-615 35-59 (205)
466 2axn_A 6-phosphofructo-2-kinas 93.3 0.085 2.9E-06 61.7 6.5 26 591-616 36-61 (520)
467 2i3b_A HCR-ntpase, human cance 93.3 0.046 1.6E-06 55.0 3.5 24 592-615 3-26 (189)
468 2ewv_A Twitching motility prot 93.2 0.041 1.4E-06 61.6 3.4 34 869-902 127-160 (372)
469 3p32_A Probable GTPase RV1496/ 93.2 0.23 7.9E-06 55.0 9.4 26 591-616 80-105 (355)
470 2zts_A Putative uncharacterize 93.1 0.056 1.9E-06 55.9 4.1 36 874-909 26-65 (251)
471 2og2_A Putative signal recogni 93.1 0.06 2E-06 59.8 4.5 40 875-915 154-196 (359)
472 2cbz_A Multidrug resistance-as 93.1 0.033 1.1E-06 58.2 2.2 29 587-615 28-56 (237)
473 2v9p_A Replication protein E1; 93.0 0.055 1.9E-06 58.7 3.9 33 874-906 122-154 (305)
474 3ozx_A RNAse L inhibitor; ATP 93.0 0.26 8.9E-06 57.8 9.9 30 587-616 291-320 (538)
475 3aez_A Pantothenate kinase; tr 92.9 0.059 2E-06 58.7 4.0 30 587-616 87-116 (312)
476 3dzd_A Transcriptional regulat 92.9 0.084 2.9E-06 58.9 5.4 36 879-914 153-190 (368)
477 2j9r_A Thymidine kinase; TK1, 92.9 0.14 4.8E-06 52.4 6.5 26 592-617 30-55 (214)
478 1sky_E F1-ATPase, F1-ATP synth 92.9 0.056 1.9E-06 61.9 3.9 25 591-615 152-176 (473)
479 2yhs_A FTSY, cell division pro 92.9 0.064 2.2E-06 61.8 4.4 38 876-914 291-331 (503)
480 2axn_A 6-phosphofructo-2-kinas 92.9 0.046 1.6E-06 64.0 3.2 28 879-906 36-63 (520)
481 3cr8_A Sulfate adenylyltranfer 92.8 0.045 1.5E-06 64.4 3.1 39 876-914 367-409 (552)
482 2pcj_A ABC transporter, lipopr 92.8 0.03 1E-06 58.0 1.3 29 587-615 27-55 (224)
483 3eph_A TRNA isopentenyltransfe 92.8 0.074 2.5E-06 59.7 4.6 25 591-615 3-27 (409)
484 1vma_A Cell division protein F 92.7 0.083 2.8E-06 57.4 4.8 35 876-910 102-139 (306)
485 1wb9_A DNA mismatch repair pro 92.7 0.43 1.5E-05 58.6 11.6 25 589-613 606-630 (800)
486 1b0u_A Histidine permease; ABC 92.6 0.041 1.4E-06 58.4 2.2 29 587-615 29-57 (262)
487 2gxq_A Heat resistant RNA depe 92.6 0.21 7.3E-06 50.0 7.5 164 552-739 2-206 (207)
488 1mv5_A LMRA, multidrug resista 92.6 0.04 1.4E-06 57.8 2.1 29 587-615 25-53 (243)
489 3jvv_A Twitching mobility prot 92.6 0.045 1.6E-06 60.8 2.6 34 878-911 123-160 (356)
490 1rj9_A FTSY, signal recognitio 92.6 0.12 4.2E-06 55.9 6.0 37 878-915 102-141 (304)
491 1p5z_B DCK, deoxycytidine kina 92.6 0.03 1E-06 59.3 1.1 28 880-907 26-54 (263)
492 2i1q_A DNA repair and recombin 92.6 0.069 2.4E-06 58.2 4.1 29 874-902 94-122 (322)
493 1sq5_A Pantothenate kinase; P- 92.5 0.054 1.8E-06 58.9 3.0 25 879-903 81-105 (308)
494 2onk_A Molybdate/tungstate ABC 92.5 0.049 1.7E-06 57.0 2.6 28 587-615 22-49 (240)
495 1xjc_A MOBB protein homolog; s 92.5 0.089 3E-06 52.0 4.3 26 592-617 6-31 (169)
496 1a7j_A Phosphoribulokinase; tr 92.5 0.044 1.5E-06 59.1 2.2 39 592-633 7-45 (290)
497 2zu0_C Probable ATP-dependent 92.5 0.052 1.8E-06 57.8 2.7 27 587-613 43-69 (267)
498 1c9k_A COBU, adenosylcobinamid 92.5 0.052 1.8E-06 54.2 2.6 32 593-631 2-33 (180)
499 1qde_A EIF4A, translation init 92.4 0.39 1.3E-05 48.8 9.4 155 539-716 2-195 (224)
500 2ghi_A Transport protein; mult 92.4 0.045 1.5E-06 58.1 2.2 28 587-614 43-70 (260)
No 1
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=3e-59 Score=567.59 Aligned_cols=356 Identities=28% Similarity=0.462 Sum_probs=314.9
Q ss_pred cccccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEec
Q 002386 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (929)
Q Consensus 550 ~~~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~ 629 (929)
...+++++|++.+++++.+.+. ++..++++|..++..+|+|||||||||||||++||++|++++ .+++.++|
T Consensus 200 ~v~~~dIgGl~~~~~~l~e~v~--~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg------~~~~~v~~ 271 (806)
T 3cf2_A 200 EVGYDDIGGCRKQLAQIKEMVE--LPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG------AFFFLING 271 (806)
T ss_dssp SCCGGGCCSCCTTHHHHHHHHH--HHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTT------CEEEEEEH
T ss_pred CCChhhhcCHHHHHHHHHHHHH--HHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhC------CeEEEEEh
Confidence 4567899999999999998654 344567899999999999999999999999999999999998 89999999
Q ss_pred cccccCchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCCCc
Q 002386 630 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (929)
Q Consensus 630 s~L~~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (929)
.++.+.+.++.++.++.+|..|.+++|+||||||+|.|++.+....+ ....++..+|+..|+++.... +
T Consensus 272 ~~l~sk~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~----~~~~riv~~LL~~mdg~~~~~-------~ 340 (806)
T 3cf2_A 272 PEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHG----EVERRIVSQLLTLMDGLKQRA-------H 340 (806)
T ss_dssp HHHHSSCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCC----TTHHHHHHHHHTHHHHCCGGG-------C
T ss_pred HHhhcccchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCC----hHHHHHHHHHHHHHhcccccC-------C
Confidence 99999999999999999999999999999999999999975543322 234678889999999986543 5
Q ss_pred EEEEEecCCCCccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhhcccccCHHHHHHHHhhcCCCChhhHHHHHHHHH
Q 002386 710 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTV 789 (929)
Q Consensus 710 VivIattn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~d~~l~~LA~~teG~s~~DL~~Lv~~A~ 789 (929)
|+||++||+++.||++|+|+|||+.+|+++.|+.++|.+||+.++++..+. ++.++..+|..|+||+++||..+|++|.
T Consensus 341 V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~-~dvdl~~lA~~T~GfsgaDL~~Lv~eA~ 419 (806)
T 3cf2_A 341 VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA-DDVDLEQVANETHGHVGADLAALCSEAA 419 (806)
T ss_dssp EEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEEC-TTCCHHHHHHHCCSCCHHHHHHHHHHHH
T ss_pred EEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCC-cccCHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999888764432 3446899999999999999999999999
Q ss_pred HHHhhccccCC----c--cccccccccccccccccccccccccccccccccccCCCCCccCCCCCchhhHHHHHHHHhcC
Q 002386 790 HAAVGRYLHSD----S--SFEKHIKPTLVRDDFSQAMHEFLPVAMRDITKTSAEGGRSGWDDVGGLTDIQNAIKEMIELP 863 (929)
Q Consensus 790 ~~a~~r~~~~~----~--~~~~~~~~~lt~edf~~al~~~~P~slr~v~l~~~~~~~~~w~dIgGL~~vk~~L~e~le~p 863 (929)
+.|+.|..... . ..+......++.+||..|+..+.|+.+++.....|. +.|+|||||+++|+.|+++++||
T Consensus 420 ~~A~~r~~~~i~~~~~~~~~e~~~~~~v~~~Df~~Al~~~~ps~~r~~~~~~p~---v~w~diggl~~~k~~l~e~v~~p 496 (806)
T 3cf2_A 420 LQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQ---VTWEDIGGLEDVKRELQELVQYP 496 (806)
T ss_dssp HHHHHHHHHHGGGTCCCCSHHHHHHCEECTTHHHHHHSSSSCCCCCCCCCBCCC---CCSTTCCSCHHHHHHHTTTTTTT
T ss_pred HHHHHhccccccccccccchhhhccceeeHHHHHHHHHhCCCcccccccccCCC---CCHHHhCCHHHHHHHHHHHHHhh
Confidence 99988754110 0 001112356889999999999999999988777664 89999999999999999999999
Q ss_pred CCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHcCCceEEEecccccccccChhhHHHhh
Q 002386 864 SKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRR 928 (929)
Q Consensus 864 ~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~glnfIsVkg~ELl~kyIG~SEq~VRd 928 (929)
++||+.|.+.+++++.|+|||||||||||++|+|+|.+++.+|+++++++|++||+|+||++||+
T Consensus 497 ~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~vGese~~vr~ 561 (806)
T 3cf2_A 497 VEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRE 561 (806)
T ss_dssp TTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTTCSSCHHHHHH
T ss_pred hhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhccccchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999985
No 2
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=100.00 E-value=2.1e-39 Score=400.67 Aligned_cols=356 Identities=28% Similarity=0.450 Sum_probs=300.7
Q ss_pred cccccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEec
Q 002386 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (929)
Q Consensus 550 ~~~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~ 629 (929)
...+++++|++.+++++.+.+.. +..++++|..+++.++.++||+||||||||++|+++|..++ .+++.++|
T Consensus 200 ~v~~~di~G~~~~~~~l~e~i~~--~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~------~~~i~v~~ 271 (806)
T 1ypw_A 200 EVGYDDVGGCRKQLAQIKEMVEL--PLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG------AFFFLING 271 (806)
T ss_dssp SCCGGGCCSCSGGGGHHHHHHHH--HHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTT------CEEEEEEH
T ss_pred CCCHHHhCChHHHHHHHHHHHHH--HhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcC------CcEEEEEc
Confidence 34678999999999999987753 22356789999999999999999999999999999999987 78899999
Q ss_pred cccccCchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCCCc
Q 002386 630 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (929)
Q Consensus 630 s~L~~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (929)
.++.+...+.....+..+|+.+....|+++||||+|.+++.+... ......++...|...+++.... ..
T Consensus 272 ~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~----~~~~~~~~~~~Ll~ll~g~~~~-------~~ 340 (806)
T 1ypw_A 272 PEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT----HGEVERRIVSQLLTLMDGLKQR-------AH 340 (806)
T ss_dssp HHHSSSSTTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCC----CSHHHHHHHHHHHHHHHSSCTT-------SC
T ss_pred hHhhhhhhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccc----cchHHHHHHHHHHHHhhhhccc-------cc
Confidence 999999999999999999999999999999999999998533221 2334457778888888876543 25
Q ss_pred EEEEEecCCCCccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhhcccccCHHHHHHHHhhcCCCChhhHHHHHHHHH
Q 002386 710 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTV 789 (929)
Q Consensus 710 VivIattn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~d~~l~~LA~~teG~s~~DL~~Lv~~A~ 789 (929)
+++|+++|+++.+++++++++||+..+.++.|+.++|.+|++.++.+..+. .+..+..++..+.||+++|+..++..|.
T Consensus 341 v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~-~~~~l~~la~~t~g~~g~dl~~l~~ea~ 419 (806)
T 1ypw_A 341 VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA-DDVDLEQVANETHGHVGADLAALCSEAA 419 (806)
T ss_dssp CEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCC-TTCCTHHHHHSCSSCCHHHHHHHHHHHH
T ss_pred EEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCc-ccchhHHHHHhhcCcchHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999887654332 3345788999999999999999999999
Q ss_pred HHHhhccccCCcc------ccccccccccccccccccccccccccccccccccCCCCCccCCCCCchhhHHHHHHHHhcC
Q 002386 790 HAAVGRYLHSDSS------FEKHIKPTLVRDDFSQAMHEFLPVAMRDITKTSAEGGRSGWDDVGGLTDIQNAIKEMIELP 863 (929)
Q Consensus 790 ~~a~~r~~~~~~~------~~~~~~~~lt~edf~~al~~~~P~slr~v~l~~~~~~~~~w~dIgGL~~vk~~L~e~le~p 863 (929)
..++.+....... ........++.+||..++....|...+......+ .+.|++++|++++|+.|.+.+.||
T Consensus 420 ~~a~r~~~~~i~~~~~~~~~~~~~~~~v~~~d~~~al~~~~~s~~~~~~~~~~---~v~~~di~gl~~vk~~l~~~v~~~ 496 (806)
T 1ypw_A 420 LQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVP---QVTWEDIGGLEDVKRELQELVQYP 496 (806)
T ss_dssp HHHHHHTTTTTSCHHHHCCHHHHTTCCCCTTHHHHHHHHSCCCCCCCCCCCCC---CCSSCSSSCCCCHHHHHHTTTTSS
T ss_pred HHHHhhhccccchhhhccchhhhhhhhhhhhhhhccccccCchhhhhhcccCc---cccccccccchhhhhhHHHHHHhh
Confidence 8887654311000 0011234577888988888888877776555554 489999999999999999999999
Q ss_pred CCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHcCCceEEEecccccccccChhhHHHhh
Q 002386 864 SKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRR 928 (929)
Q Consensus 864 ~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~glnfIsVkg~ELl~kyIG~SEq~VRd 928 (929)
.+++..|.+.+++++.++|||||||||||+||+++|++++.+|+.+++++++++|+|++|+++|.
T Consensus 497 ~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~~~g~~~~~i~~ 561 (806)
T 1ypw_A 497 VEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRE 561 (806)
T ss_dssp SSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTTCCTTTSSHHHHH
T ss_pred hhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhhhhhcCccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999874
No 3
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-37 Score=349.35 Aligned_cols=249 Identities=23% Similarity=0.347 Sum_probs=218.1
Q ss_pred cccccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEec
Q 002386 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (929)
Q Consensus 550 ~~~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~ 629 (929)
..++++++|++.+++++.+.+ .++..++++|..+|+++|+|+|||||||||||++|+++|.+++ .+|+.+++
T Consensus 144 ~v~~~dIgGl~~~k~~l~e~v--~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~------~~f~~v~~ 215 (405)
T 4b4t_J 144 DSTYDMVGGLTKQIKEIKEVI--ELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTD------CKFIRVSG 215 (405)
T ss_dssp SCCGGGSCSCHHHHHHHHHHT--HHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHT------CEEEEEEG
T ss_pred CCCHHHhCCHHHHHHHHHHHH--HHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhC------CCceEEEh
Confidence 567899999999999999954 5556678999999999999999999999999999999999998 89999999
Q ss_pred cccccCchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCCCc
Q 002386 630 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (929)
Q Consensus 630 s~L~~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (929)
+++.+.+.|+.++.++++|..|+..+|+||||||+|.+++.+.+..+. ......+++..|+..||++.... +
T Consensus 216 s~l~sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~-~~~~~~~~l~~lL~~lDg~~~~~-------~ 287 (405)
T 4b4t_J 216 AELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGG-GDSEVQRTMLELLNQLDGFETSK-------N 287 (405)
T ss_dssp GGGSCSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSG-GGGHHHHHHHHHHHHHHTTTCCC-------C
T ss_pred HHhhccccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCC-CcHHHHHHHHHHHHhhhccCCCC-------C
Confidence 999999999999999999999999999999999999999765444332 22345567788888899876432 5
Q ss_pred EEEEEecCCCCccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhhcccccCHHHHHHHHhhcCCCChhhHHHHHHHHH
Q 002386 710 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTV 789 (929)
Q Consensus 710 VivIattn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~d~~l~~LA~~teG~s~~DL~~Lv~~A~ 789 (929)
|+||+|||+++.||++|+|||||+..|+|+.||.++|.+||+.++++..+. ++.++..+|..|+||+++||+.+|++|.
T Consensus 288 V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~-~dvdl~~lA~~t~G~SGADi~~l~~eA~ 366 (405)
T 4b4t_J 288 IKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLT-RGINLRKVAEKMNGCSGADVKGVCTEAG 366 (405)
T ss_dssp EEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCC-SSCCHHHHHHHCCSCCHHHHHHHHHHHH
T ss_pred eEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCC-ccCCHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998765443 3345899999999999999999999999
Q ss_pred HHHhhccccCCcccccccccccccccccccccccccc
Q 002386 790 HAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLPV 826 (929)
Q Consensus 790 ~~a~~r~~~~~~~~~~~~~~~lt~edf~~al~~~~P~ 826 (929)
..|+++ +...++++||..|++...+.
T Consensus 367 ~~Air~-----------~~~~vt~~Df~~Al~~v~~~ 392 (405)
T 4b4t_J 367 MYALRE-----------RRIHVTQEDFELAVGKVMNK 392 (405)
T ss_dssp HHHHHT-----------TCSBCCHHHHHHHHHHHHHH
T ss_pred HHHHHc-----------CCCCcCHHHHHHHHHHHhCc
Confidence 999876 33569999999999887664
No 4
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.8e-37 Score=343.51 Aligned_cols=252 Identities=20% Similarity=0.295 Sum_probs=217.9
Q ss_pred CccccccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEE
Q 002386 548 GFDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFV 627 (929)
Q Consensus 548 ~~~~~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V 627 (929)
....++++++|++.+++++.+.+. ++..++++|..+|+++|+|+|||||||||||++|+++|.+++ .+|+.+
T Consensus 176 ~p~v~~~DIgGld~~k~~L~e~v~--~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~------~~fi~v 247 (437)
T 4b4t_I 176 SPTESYSDIGGLESQIQEIKESVE--LPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTS------ATFLRI 247 (437)
T ss_dssp SCCCCGGGTCSCHHHHHHHHHHHH--HHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHT------CEEEEE
T ss_pred CCCCcceecCcHHHHHHHHHHHHH--HHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhC------CCEEEE
Confidence 346678999999999999999664 344567899999999999999999999999999999999998 899999
Q ss_pred eccccccCchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCC
Q 002386 628 CCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGI 707 (929)
Q Consensus 628 ~~s~L~~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~ 707 (929)
+++++.+.+.++.++.++.+|..|...+|+||||||+|.+++.+........ ....+.+..|+..||++...
T Consensus 248 ~~s~l~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~-~~~~~~l~~LL~~lDg~~~~------- 319 (437)
T 4b4t_I 248 VGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGE-REIQRTMLELLNQLDGFDDR------- 319 (437)
T ss_dssp ESGGGCCSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSC-CHHHHHHHHHHHHHHHCCCS-------
T ss_pred EHHHhhhccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCcc-HHHHHHHHHHHHHhhCcCCC-------
Confidence 9999999999999999999999999999999999999999976654443322 33446667788888876543
Q ss_pred CcEEEEEecCCCCccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhhcccccCHHHHHHHHhhcCCCChhhHHHHHHH
Q 002386 708 GPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDR 787 (929)
Q Consensus 708 ~~VivIattn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~d~~l~~LA~~teG~s~~DL~~Lv~~ 787 (929)
.+|+||+|||+++.||++|+|+|||+.+|+|+.||.++|.+||+.++++..+. ++.++..||..|+||+++||+.+|++
T Consensus 320 ~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~-~dvdl~~LA~~T~GfSGADI~~l~~e 398 (437)
T 4b4t_I 320 GDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLS-EDVNLETLVTTKDDLSGADIQAMCTE 398 (437)
T ss_dssp SSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBC-SCCCHHHHHHHCCSCCHHHHHHHHHH
T ss_pred CCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCC-CcCCHHHHHHhCCCCCHHHHHHHHHH
Confidence 25999999999999999999999999999999999999999999998765443 33358999999999999999999999
Q ss_pred HHHHHhhccccCCccccccccccccccccccccccccccc
Q 002386 788 TVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLPVA 827 (929)
Q Consensus 788 A~~~a~~r~~~~~~~~~~~~~~~lt~edf~~al~~~~P~s 827 (929)
|...|+++ ....++.+||.+|++...|..
T Consensus 399 A~~~Air~-----------~~~~It~eDf~~Al~rv~~~~ 427 (437)
T 4b4t_I 399 AGLLALRE-----------RRMQVTAEDFKQAKERVMKNK 427 (437)
T ss_dssp HHHHHHHT-----------TCSCBCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHc-----------CCCccCHHHHHHHHHHHhCCC
Confidence 99999876 335699999999998876643
No 5
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-36 Score=345.54 Aligned_cols=254 Identities=20% Similarity=0.309 Sum_probs=219.1
Q ss_pred ccccccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEe
Q 002386 549 FDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVC 628 (929)
Q Consensus 549 ~~~~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~ 628 (929)
...++++++|++.+++++.+.+ .++..++++|..+|+++|+|+|||||||||||++|+++|.+++ .+|+.++
T Consensus 176 p~~t~~digGl~~~k~~l~e~v--~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~------~~f~~v~ 247 (434)
T 4b4t_M 176 PTETYSDVGGLDKQIEELVEAI--VLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTN------ATFLKLA 247 (434)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHT--HHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHT------CEEEEEE
T ss_pred CCCChHhcCcHHHHHHHHHHHH--HHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhC------CCEEEEe
Confidence 3567899999999999999855 4445578899999999999999999999999999999999998 8999999
Q ss_pred ccccccCchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCCC
Q 002386 629 CSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIG 708 (929)
Q Consensus 629 ~s~L~~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~ 708 (929)
++++.+.+.|+..+.++.+|..|...+|+||||||+|.+++.+.+..... ..........|+..||++.+..
T Consensus 248 ~s~l~~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~-~~~~~~~~~~lL~~ldg~~~~~------- 319 (434)
T 4b4t_M 248 APQLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSG-DREVQRTMLELLNQLDGFSSDD------- 319 (434)
T ss_dssp GGGGCSSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGT-THHHHHHHHHHHHHHTTSCSSC-------
T ss_pred hhhhhhcccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCC-chHHHHHHHHHHHHhhccCCCC-------
Confidence 99999999999999999999999999999999999999997654433322 2234466777888888876432
Q ss_pred cEEEEEecCCCCccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhhcccccCHHHHHHHHhhcCCCChhhHHHHHHHH
Q 002386 709 PIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRT 788 (929)
Q Consensus 709 ~VivIattn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~d~~l~~LA~~teG~s~~DL~~Lv~~A 788 (929)
+|+||+|||+++.||++|+|+|||+..|+|+.||.++|.+||+.++++..+. ++.++..||..|+||+++||+.+|+.|
T Consensus 320 ~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~-~dvdl~~lA~~t~G~sGADi~~l~~eA 398 (434)
T 4b4t_M 320 RVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTD-DDINWQELARSTDEFNGAQLKAVTVEA 398 (434)
T ss_dssp SSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBC-SCCCHHHHHHHCSSCCHHHHHHHHHHH
T ss_pred CEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCC-CcCCHHHHHHhCCCCCHHHHHHHHHHH
Confidence 5999999999999999999999999999999999999999999998865443 233588999999999999999999999
Q ss_pred HHHHhhccccCCcccccccccccccccccccccccccccccc
Q 002386 789 VHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLPVAMRD 830 (929)
Q Consensus 789 ~~~a~~r~~~~~~~~~~~~~~~lt~edf~~al~~~~P~slr~ 830 (929)
...|+++ +...++.+||.+|++...|...+.
T Consensus 399 ~~~a~r~-----------~~~~i~~~Df~~Al~~v~~~~~~~ 429 (434)
T 4b4t_M 399 GMIALRN-----------GQSSVKHEDFVEGISEVQARKSKS 429 (434)
T ss_dssp HHHHHHH-----------TCSSBCHHHHHHHHHSCSSSCCCC
T ss_pred HHHHHHc-----------CCCCcCHHHHHHHHHHHhCCCCcC
Confidence 9999876 335699999999999988865443
No 6
>1wlf_A PEX1, peroxisome biogenesis factor 1; N-terminal domain, protein transport; 2.05A {Mus musculus} SCOP: b.52.2.3 d.31.1.1
Probab=100.00 E-value=1.2e-36 Score=306.63 Aligned_cols=163 Identities=30% Similarity=0.539 Sum_probs=151.9
Q ss_pred CeEEEEEeCCccccceeCCHHHHHHHhhccccCCCCceEEEEEEeCCCCeEEEEecCCcC----CCCeeeecHhHHhhcC
Q 002386 1 MELEVRVVGGVENCFVSLPLKLIETLESTRSAHLLPQVLSLELRSRSNQRWVVAWSGATS----SSSFIEVARQFAECIS 76 (929)
Q Consensus 1 m~~~v~~~~~~~~~~v~lp~~l~~~l~~~~~~~~~~q~~~~e~~~~~~~~~~~gw~g~~s----~~~~iei~~~~a~~~g 76 (929)
|+++|+|++ .|+||||||+++++.|.. .|..+|||.++. +.+|+||.|+.+ ..+.||||+.||+++|
T Consensus 13 ~~~~v~~~~-~~~~~vrL~~~~~~~L~~-------~~gd~VeI~g~~-~t~~~~w~~~~~~~d~~~~~I~Id~~~r~n~g 83 (179)
T 1wlf_A 13 AVVTVAFTN-ARDCFLHLPRRLVAQLHL-------LQNQAIEVASDH-QPTYLSWVEGRHFNDQSENVAEINRQVGQKLG 83 (179)
T ss_dssp EEEEEEEEC-CSSSCEEECHHHHHHTTC-------CTTCCEEEESSS-CCEEECEEECSSCC---CCEEEEEHHHHHHTT
T ss_pred EEEEEEEEC-CCCcEEECCHHHHHHcCC-------CCCcEEEEEeCC-eeEEEEEECCCCcccCCCCEEEECHHHHhHCC
Confidence 689999999 599999999999999973 578999999865 689999999976 2379999999999999
Q ss_pred CCCCCEEEEEEeecCccceeEEEecCCcchhHHHHhcHHHHHHHHhcccceecCCCeEeEEecCceEEEEEEeccCCCCC
Q 002386 77 LADHTIVQVRVVSNVLKATLVTIEPLTEDDWEVLELNSEHAEAAILNQVRIVHEAMRFPLWLHGRTIITFHVVSTFPKKP 156 (929)
Q Consensus 77 l~~~~~v~~~~~~~~~~~~~v~veP~t~dDWEi~el~a~~le~~lL~Q~r~v~~~~~~~~~~~~~~~~~~~v~~~~p~~~ 156 (929)
+.+|++|.|+.+.+++.|++|+|||+|+|||||+|+||+|||.+||+|+|+|++|++||+|+++++.++|+|+++.|+..
T Consensus 84 v~~Gd~V~V~~~~~~~~A~~V~laP~~~dD~ei~e~~a~~le~~Ll~QiR~v~~G~~i~v~~~g~~~i~f~V~~~~P~~~ 163 (179)
T 1wlf_A 84 LSSGDQVFLRPCSHVVSCQQVEVEPLSADDWEILELHAISLEQHLLDQIRIVFPKAVVPIWVDQQTYIFIQIVTLMPAAP 163 (179)
T ss_dssp CCTTCEEEEEECSCCEECSEEEEEESSHHHHHHHHHSCSSHHHHHHHHCCEECTTCEEEEESSSSCEEEEEEEEEESCCS
T ss_pred CCCCCEEEEEECCCCccceEEEEEcCCcCCeEEehhHHHHHHHHHhcCceeccCCCEEEEEecCCeEEEEEEEEeeCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999998999999999999778
Q ss_pred eEEecCCCeEEEcccC
Q 002386 157 VVQLVPGTEVAVAPKR 172 (929)
Q Consensus 157 ~~~l~~~tev~vaPk~ 172 (929)
+++|+++|||+|+||+
T Consensus 164 ~v~It~~TeI~v~pk~ 179 (179)
T 1wlf_A 164 YGRLETNTKLLIQPKT 179 (179)
T ss_dssp SEECCTTCEEEECC--
T ss_pred eEEECCCcEEEEecCC
Confidence 9999999999999985
No 7
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.3e-36 Score=340.88 Aligned_cols=249 Identities=20% Similarity=0.286 Sum_probs=216.7
Q ss_pred cccccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEec
Q 002386 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (929)
Q Consensus 550 ~~~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~ 629 (929)
..++++++|++.+++++.+.+ .++..++++|..+|+++|+|+|||||||||||++|+++|.+++ .+++.+++
T Consensus 177 ~v~~~digGl~~~k~~l~e~v--~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~------~~~~~v~~ 248 (437)
T 4b4t_L 177 EITFDGIGGLTEQIRELREVI--ELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIG------ANFIFSPA 248 (437)
T ss_dssp SSCSGGGCSCHHHHHHHHHHH--HHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHT------CEEEEEEG
T ss_pred CCChhHhCChHHHHHHHHHHH--HHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhC------CCEEEEeh
Confidence 567899999999999999955 4455678999999999999999999999999999999999998 89999999
Q ss_pred cccccCchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCCCc
Q 002386 630 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (929)
Q Consensus 630 s~L~~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (929)
+++.+.+.++..+.++.+|..|..++|+||||||+|.+++.+...... ........+..|+..||++.... +
T Consensus 249 s~l~sk~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~-~~~~~~~~l~~lL~~lDg~~~~~-------~ 320 (437)
T 4b4t_L 249 SGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTS-ADREIQRTLMELLTQMDGFDNLG-------Q 320 (437)
T ss_dssp GGTCCSSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCS-STTHHHHHHHHHHHHHHSSSCTT-------S
T ss_pred hhhccccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCC-cchHHHHHHHHHHHHhhcccCCC-------C
Confidence 999999999999999999999999999999999999999765443332 23344567778888898876432 5
Q ss_pred EEEEEecCCCCccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhhcccccCHHHHHHHHhhcCCCChhhHHHHHHHHH
Q 002386 710 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTV 789 (929)
Q Consensus 710 VivIattn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~d~~l~~LA~~teG~s~~DL~~Lv~~A~ 789 (929)
|+||+|||+++.||++|+|+|||+.+|+|+.||.++|.+||+.++.+.... ++.++..+|..|+||+++||+.+|+.|.
T Consensus 321 vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~-~d~dl~~lA~~t~G~sGADi~~l~~eA~ 399 (437)
T 4b4t_L 321 TKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKT-GEFDFEAAVKMSDGFNGADIRNCATEAG 399 (437)
T ss_dssp SEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBC-SCCCHHHHHHTCCSCCHHHHHHHHHHHH
T ss_pred eEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCC-cccCHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999998865443 3445899999999999999999999999
Q ss_pred HHHhhccccCCcccccccccccccccccccccccccc
Q 002386 790 HAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLPV 826 (929)
Q Consensus 790 ~~a~~r~~~~~~~~~~~~~~~lt~edf~~al~~~~P~ 826 (929)
..|+++ +...++.+||.+|++...|.
T Consensus 400 ~~air~-----------~~~~i~~~d~~~Al~~v~~~ 425 (437)
T 4b4t_L 400 FFAIRD-----------DRDHINPDDLMKAVRKVAEV 425 (437)
T ss_dssp HHHHHT-----------TCSSBCHHHHHHHHHHHHHT
T ss_pred HHHHHc-----------CCCCCCHHHHHHHHHHHHhc
Confidence 999876 23569999999999877664
No 8
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=8.5e-36 Score=362.26 Aligned_cols=260 Identities=22% Similarity=0.306 Sum_probs=182.2
Q ss_pred cccccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEec
Q 002386 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (929)
Q Consensus 550 ~~~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~ 629 (929)
..++.+++|++.+++++.+ .+.++..+++.|.+++..+++++|||||||||||++|+++|.+++ .+++.+++
T Consensus 473 ~v~w~diggl~~~k~~l~e--~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~------~~f~~v~~ 544 (806)
T 3cf2_A 473 QVTWEDIGGLEDVKRELQE--LVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ------ANFISIKG 544 (806)
T ss_dssp CCCSTTCCSCHHHHHHHTT--TTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTT------CEEEECCH
T ss_pred CCCHHHhCCHHHHHHHHHH--HHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhC------CceEEecc
Confidence 4456788889888888887 446677889999999999999999999999999999999999998 88999999
Q ss_pred cccccCchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCCCc
Q 002386 630 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (929)
Q Consensus 630 s~L~~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (929)
+++.+++.|+.++.++.+|..|+..+||||||||+|.+++.++...+. ......++.+.|+..||++.... +
T Consensus 545 ~~l~s~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~-~~~~~~rv~~~lL~~mdg~~~~~-------~ 616 (806)
T 3cf2_A 545 PELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGD-GGGAADRVINQILTEMDGMSTKK-------N 616 (806)
T ss_dssp HHHHTTTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC---------------CHHHHHHHHHHHSSCSSS-------S
T ss_pred chhhccccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCC-CchHHHHHHHHHHHHHhCCCCCC-------C
Confidence 999999999999999999999999999999999999999765433221 12234578889999999876532 5
Q ss_pred EEEEEecCCCCccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhhcccccCHHHHHHHHhhcCCCChhhHHHHHHHHH
Q 002386 710 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTV 789 (929)
Q Consensus 710 VivIattn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~d~~l~~LA~~teG~s~~DL~~Lv~~A~ 789 (929)
|+||+|||+++.||++++|+|||+..|+++.||.++|.+||+.++++..+. .+.++..||..|+||+++||+.+|++|.
T Consensus 617 V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~-~~~dl~~la~~t~g~SGadi~~l~~~A~ 695 (806)
T 3cf2_A 617 VFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVA-KDVDLEFLAKMTNGFSGADLTEICQRAC 695 (806)
T ss_dssp EEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--C-CC----------------CHHHHHHHHH
T ss_pred EEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCC-CCCCHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999988765443 4456899999999999999999999999
Q ss_pred HHHhhccccCCcc--------------cccccccccccccccccccccccc
Q 002386 790 HAAVGRYLHSDSS--------------FEKHIKPTLVRDDFSQAMHEFLPV 826 (929)
Q Consensus 790 ~~a~~r~~~~~~~--------------~~~~~~~~lt~edf~~al~~~~P~ 826 (929)
..|+++....... ......+.++++||.+|++...|+
T Consensus 696 ~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~df~~al~~~~pS 746 (806)
T 3cf2_A 696 KLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRS 746 (806)
T ss_dssp HHHHHHHHC-----------------------CCC----CCTTTC------
T ss_pred HHHHHHHHHhhhhhhhhhccCccccccccccccCccCHHHHHHHHHhCCCC
Confidence 9999875421100 011123469999999999998885
No 9
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.8e-36 Score=338.53 Aligned_cols=249 Identities=20% Similarity=0.251 Sum_probs=214.5
Q ss_pred ccccccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEe
Q 002386 549 FDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVC 628 (929)
Q Consensus 549 ~~~~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~ 628 (929)
...++++++|++.+++++.+.+ .++..++++|..+|+++|+|+|||||||||||++|+++|.+++ .+|+.++
T Consensus 204 P~vt~~DIgGl~~~k~~L~e~V--~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~------~~fi~vs 275 (467)
T 4b4t_H 204 PDVTYSDVGGCKDQIEKLREVV--ELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTD------ATFIRVI 275 (467)
T ss_dssp CSCCCSSCTTCHHHHHHHHHHT--HHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHT------CEEEEEE
T ss_pred CCCCHHHhccHHHHHHHHHHHH--HHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccC------CCeEEEE
Confidence 3567889999999999999855 4455578999999999999999999999999999999999998 8999999
Q ss_pred ccccccCchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCCC
Q 002386 629 CSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIG 708 (929)
Q Consensus 629 ~s~L~~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~ 708 (929)
++++.+.+.|+.++.++.+|..|...+|+||||||+|.+++.+.+.... ...........|+..||++... .
T Consensus 276 ~s~L~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~-~~~~~~~~l~~lL~~lDg~~~~-------~ 347 (467)
T 4b4t_H 276 GSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAG-GDNEVQRTMLELITQLDGFDPR-------G 347 (467)
T ss_dssp GGGGCCCSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCG-GGGHHHHHHHHHHHHHHSSCCT-------T
T ss_pred hHHhhcccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCC-ccHHHHHHHHHHHHHhhccCCC-------C
Confidence 9999999999999999999999999999999999999999765544332 2234445666777778876543 2
Q ss_pred cEEEEEecCCCCccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhhcccccCHHHHHHHHhhcCCCChhhHHHHHHHH
Q 002386 709 PIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRT 788 (929)
Q Consensus 709 ~VivIattn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~d~~l~~LA~~teG~s~~DL~~Lv~~A 788 (929)
+|+||+|||+++.||++|+|+|||+.+|+|+.|+.++|.+||+.++++..+. .+.++..||..|+||+++||+.+|++|
T Consensus 348 ~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~-~dvdl~~LA~~T~GfSGADI~~l~~eA 426 (467)
T 4b4t_H 348 NIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVE-RGIRWELISRLCPNSTGAELRSVCTEA 426 (467)
T ss_dssp TEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBC-SSCCHHHHHHHCCSCCHHHHHHHHHHH
T ss_pred cEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCC-CCCCHHHHHHHCCCCCHHHHHHHHHHH
Confidence 6999999999999999999999999999999999999999999998765443 233588999999999999999999999
Q ss_pred HHHHhhccccCCccccccccccccccccccccccccc
Q 002386 789 VHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLP 825 (929)
Q Consensus 789 ~~~a~~r~~~~~~~~~~~~~~~lt~edf~~al~~~~P 825 (929)
.+.|+++ ....++.+||.+|++...+
T Consensus 427 a~~Air~-----------~~~~it~~Df~~Al~kV~~ 452 (467)
T 4b4t_H 427 GMFAIRA-----------RRKVATEKDFLKAVDKVIS 452 (467)
T ss_dssp HHHHHHH-----------TCSSBCHHHHHHHHHHHHH
T ss_pred HHHHHHc-----------CCCccCHHHHHHHHHHHhc
Confidence 9999876 2356899999999887654
No 10
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.1e-35 Score=335.24 Aligned_cols=247 Identities=20% Similarity=0.292 Sum_probs=215.0
Q ss_pred ccccccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEe
Q 002386 549 FDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVC 628 (929)
Q Consensus 549 ~~~~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~ 628 (929)
.+.++++++|++.+++++.+.+. ++..++++|..+|+++|+|+|||||||||||++|+++|.+++ .+++.++
T Consensus 167 p~v~~~digGl~~~k~~l~e~v~--~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~------~~~~~v~ 238 (428)
T 4b4t_K 167 PDVTYADVGGLDMQKQEIREAVE--LPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTK------AAFIRVN 238 (428)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHHH--HHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHT------CEEEEEE
T ss_pred CCCCHHHhccHHHHHHHHHHHHH--HHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhC------CCeEEEe
Confidence 35678999999999999999664 344578899999999999999999999999999999999998 8999999
Q ss_pred ccccccCchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCCC
Q 002386 629 CSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIG 708 (929)
Q Consensus 629 ~s~L~~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~ 708 (929)
++++.+.+.|+..+.++.+|..|...+|+|+||||+|.+++.+....... .....+++..|+..||++....
T Consensus 239 ~~~l~~~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~-~~~~~r~l~~lL~~ldg~~~~~------- 310 (428)
T 4b4t_K 239 GSEFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGS-DREVQRILIELLTQMDGFDQST------- 310 (428)
T ss_dssp GGGTCCSSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCC-CCHHHHHHHHHHHHHHHSCSSC-------
T ss_pred cchhhccccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCC-ChHHHHHHHHHHHHhhCCCCCC-------
Confidence 99999999999999999999999999999999999999997665443332 2344577788889999876542
Q ss_pred cEEEEEecCCCCccccccccCCCcceEeeCC-CCcHHHHHHHHHHHHhhcccccCHHHHHHHHhhcCCCChhhHHHHHHH
Q 002386 709 PIAFVASAQSLEKIPQSLTSSGRFDFHVQLP-APAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDR 787 (929)
Q Consensus 709 ~VivIattn~~~~L~~~L~~~~Rf~~~i~l~-~Pd~~eR~~IL~~~l~~~~~~~~d~~l~~LA~~teG~s~~DL~~Lv~~ 787 (929)
+|+||+|||+++.||++|+|+|||+..|+|| +|+.++|.+||+.++.+..+. ++.++..+|..|+||+++||+.+|++
T Consensus 311 ~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~-~~~dl~~lA~~t~G~sgadi~~l~~e 389 (428)
T 4b4t_K 311 NVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLA-PEADLDSLIIRNDSLSGAVIAAIMQE 389 (428)
T ss_dssp SEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBC-TTCCHHHHHHHTTTCCHHHHHHHHHH
T ss_pred CEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCC-cccCHHHHHHHCCCCCHHHHHHHHHH
Confidence 5999999999999999999999999999996 899999999999998765442 33458999999999999999999999
Q ss_pred HHHHHhhccccCCccccccccccccccccccccccc
Q 002386 788 TVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEF 823 (929)
Q Consensus 788 A~~~a~~r~~~~~~~~~~~~~~~lt~edf~~al~~~ 823 (929)
|.+.|+++ ....++++||.+|+...
T Consensus 390 A~~~a~r~-----------~~~~i~~~d~~~A~~~~ 414 (428)
T 4b4t_K 390 AGLRAVRK-----------NRYVILQSDLEEAYATQ 414 (428)
T ss_dssp HHHHHHHT-----------TCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHC-----------CCCCCCHHHHHHHHHHh
Confidence 99999876 33568999999988754
No 11
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.97 E-value=1.5e-30 Score=303.73 Aligned_cols=276 Identities=24% Similarity=0.344 Sum_probs=218.2
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccc
Q 002386 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSR 631 (929)
Q Consensus 552 ~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~ 631 (929)
.+.+++|.+..++++.+.+...+ ..+++|..++.+++.++||+||||||||++|+++|++++ .++++++|..
T Consensus 202 ~~~~i~G~~~~~~~l~~~i~~~l--~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~------~~fv~vn~~~ 273 (489)
T 3hu3_A 202 GYDDIGGCRKQLAQIKEMVELPL--RHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG------AFFFLINGPE 273 (489)
T ss_dssp CGGGCCSCHHHHHHHHHHTHHHH--HCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCS------SEEEEEEHHH
T ss_pred CHHHcCCHHHHHHHHHHHHHHHh--hCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhC------CCEEEEEchH
Confidence 45678999999999998765432 357788999999999999999999999999999999986 8899999999
Q ss_pred cccCchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCCCcEE
Q 002386 632 LSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIA 711 (929)
Q Consensus 632 L~~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~Vi 711 (929)
+.+...+.....+..+|..|....|++|||||+|.+.+.+... .......+...|+..|+..... .+++
T Consensus 274 l~~~~~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~----~~~~~~~~~~~LL~~ld~~~~~-------~~v~ 342 (489)
T 3hu3_A 274 IMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT----HGEVERRIVSQLLTLMDGLKQR-------AHVI 342 (489)
T ss_dssp HHTSCTTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSC----CCHHHHHHHHHHHHHHHHSCTT-------SCEE
T ss_pred hhhhhcchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccc----cchHHHHHHHHHHHHhhccccC-------CceE
Confidence 9999999999999999999999999999999999998643322 2234557788888888876432 2599
Q ss_pred EEEecCCCCccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhhcccccCHHHHHHHHhhcCCCChhhHHHHHHHHHHH
Q 002386 712 FVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHA 791 (929)
Q Consensus 712 vIattn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~d~~l~~LA~~teG~s~~DL~~Lv~~A~~~ 791 (929)
+|+|||+++.+++++++++||+..++++.|+.++|.+||+.++....+. .+..+..++..+.||+++||..||++|...
T Consensus 343 vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~-~~~~l~~la~~t~g~s~~dL~~L~~~A~~~ 421 (489)
T 3hu3_A 343 VMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA-DDVDLEQVANETHGHVGADLAALCSEAALQ 421 (489)
T ss_dssp EEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBC-TTCCHHHHHHTCTTCCHHHHHHHHHHHHHH
T ss_pred EEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCc-chhhHHHHHHHccCCcHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999988765443 333578899999999999999999999999
Q ss_pred HhhccccCCcc----c--cccccccccccccccccccccccccccccccccCCCCCccCCCCCch
Q 002386 792 AVGRYLHSDSS----F--EKHIKPTLVRDDFSQAMHEFLPVAMRDITKTSAEGGRSGWDDVGGLT 850 (929)
Q Consensus 792 a~~r~~~~~~~----~--~~~~~~~lt~edf~~al~~~~P~slr~v~l~~~~~~~~~w~dIgGL~ 850 (929)
++++....... . .......++++||.+|++.+.|+.++++....|. +.|+||||..
T Consensus 422 a~r~~~~~i~~~~~~~~~~~~~~~~vt~edf~~Al~~~~ps~~re~~~e~p~---v~W~dig~~~ 483 (489)
T 3hu3_A 422 AIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQ---VTWEDIGGRS 483 (489)
T ss_dssp HHHTTTTTCCTTCSSCCHHHHHHCCBCHHHHHHHHTSHHHHHHHGGGC-----------------
T ss_pred HHHhccccccccccccchhhcccCcCCHHHHHHHHHhCCchhhhcccccCCC---CCHHHcCCCc
Confidence 98875321100 0 0112246899999999999999999998887775 9999999964
No 12
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.96 E-value=1.2e-28 Score=267.61 Aligned_cols=260 Identities=22% Similarity=0.304 Sum_probs=197.5
Q ss_pred ccccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEecc
Q 002386 551 SNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCS 630 (929)
Q Consensus 551 ~~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s 630 (929)
.++++++|++.+++++.+.+ ..+...++.+..+++..++|++|+||||||||||++++|..++ ..++.+++.
T Consensus 7 ~~~~di~g~~~~~~~l~~~i--~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~------~~~i~i~g~ 78 (274)
T 2x8a_A 7 VTWADIGALEDIREELTMAI--LAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESG------LNFISVKGP 78 (274)
T ss_dssp -----CCHHHHHHHHHHHHH--THHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTT------CEEEEEETT
T ss_pred CCHHHhCCHHHHHHHHHHHH--HHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcC------CCEEEEEcH
Confidence 45678999999999888754 3344467788999999999999999999999999999999987 678899999
Q ss_pred ccccCchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCCCcE
Q 002386 631 RLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPI 710 (929)
Q Consensus 631 ~L~~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V 710 (929)
++...+.++.++.+..+|+.+....|+++|+||+|.+++.+..... ....++...+...|++..... .+
T Consensus 79 ~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~----~~~~~~~~~~l~~Lsgg~~~~-------~~ 147 (274)
T 2x8a_A 79 ELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRET----GASVRVVNQLLTEMDGLEARQ-------QV 147 (274)
T ss_dssp TTCSSTTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC-------------CTTHHHHHHHHHHTCCSTT-------CE
T ss_pred HHHhhhhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcc----hHHHHHHHHHHHhhhcccccC-------CE
Confidence 9988888888899999999998889999999999998753322111 111245566667777654332 48
Q ss_pred EEEEecCCCCccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhhc-cccc-CHHHHHHHHhh--cCCCChhhHHHHHH
Q 002386 711 AFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRR-SLEC-SDEILLDVASK--CDGYDAYDLEILVD 786 (929)
Q Consensus 711 ivIattn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~-~~~~-~d~~l~~LA~~--teG~s~~DL~~Lv~ 786 (929)
++++++|+++.||++++|+|||+..|+++.|+.++|.+||+.+++.. .... .+.++..+|.. |+||+++||..+|+
T Consensus 148 i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~ 227 (274)
T 2x8a_A 148 FIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVR 227 (274)
T ss_dssp EEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHH
T ss_pred EEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999988642 2222 34458889987 45999999999999
Q ss_pred HHHHHHhhccccCCccccccccccccccccccccccccccccc
Q 002386 787 RTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLPVAMR 829 (929)
Q Consensus 787 ~A~~~a~~r~~~~~~~~~~~~~~~lt~edf~~al~~~~P~slr 829 (929)
+|.+.++++...........+...++++||.+|++.+.|+..+
T Consensus 228 ~a~~~a~~~~~~~~~~~~~~~~~~i~~~df~~al~~~~ps~~~ 270 (274)
T 2x8a_A 228 EASICALRQEMARQKSGNEKGELKVSHKHFEEAFKKVRSSISK 270 (274)
T ss_dssp HHHHHHHHHHC-----------CCBCHHHHHHHHTTCCCCC--
T ss_pred HHHHHHHHHHHhhccccccccCCeecHHHHHHHHHHhcCCCCh
Confidence 9999998875422111111233579999999999999986543
No 13
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.96 E-value=3.6e-28 Score=270.22 Aligned_cols=227 Identities=21% Similarity=0.296 Sum_probs=191.3
Q ss_pred cccccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHh-ccCccceeeEEEEe
Q 002386 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSL-EHHKDLVAHIVFVC 628 (929)
Q Consensus 550 ~~~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L-~~~~~~~~~~~~V~ 628 (929)
..++++++|++.+++.+.+.+. ++..++++|.. +..+++++|||||||||||++|+++|+++ + .+++.++
T Consensus 8 ~~~~~di~G~~~~k~~l~~~v~--~p~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~------~~~~~i~ 78 (322)
T 1xwi_A 8 NVKWSDVAGLEGAKEALKEAVI--LPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANN------STFFSIS 78 (322)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHH--HHHHCGGGSCT-TCCCCSEEEEESSSSSCHHHHHHHHHHHTTS------CEEEEEE
T ss_pred CCCHHHhcCHHHHHHHHHHHHH--HHHhCHHHHhC-CCCCCceEEEECCCCccHHHHHHHHHHHcCC------CcEEEEE
Confidence 3467899999999999988654 23334556654 35567889999999999999999999998 4 6789999
Q ss_pred ccccccCchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCCC
Q 002386 629 CSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIG 708 (929)
Q Consensus 629 ~s~L~~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~ 708 (929)
|+++.+.+.+..++.++.+|..+...+|+||||||+|.+++.+... ......++...|+..++++.... .
T Consensus 79 ~~~l~~~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~----~~~~~~~~~~~ll~~ld~~~~~~------~ 148 (322)
T 1xwi_A 79 SSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN----ESEAARRIKTEFLVQMQGVGVDN------D 148 (322)
T ss_dssp CCSSCCSSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSC----CTTHHHHHHHHHHHHHHCSSSCC------T
T ss_pred hHHHHhhhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccc----cchHHHHHHHHHHHHHhcccccC------C
Confidence 9999988888889999999999999999999999999998644332 22344577777888888764321 2
Q ss_pred cEEEEEecCCCCccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhhcccccCHHHHHHHHhhcCCCChhhHHHHHHHH
Q 002386 709 PIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRT 788 (929)
Q Consensus 709 ~VivIattn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~d~~l~~LA~~teG~s~~DL~~Lv~~A 788 (929)
+++||++||.++.++++++| ||+..++++.|+.++|.+|++.++...+..+++..+..++..|+||+++||..+|++|
T Consensus 149 ~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~A 226 (322)
T 1xwi_A 149 GILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDA 226 (322)
T ss_dssp TEEEEEEESCTTTSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred CEEEEEecCCcccCCHHHHh--hcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 59999999999999999999 9999999999999999999999998877778899999999999999999999999999
Q ss_pred HHHHhhccc
Q 002386 789 VHAAVGRYL 797 (929)
Q Consensus 789 ~~~a~~r~~ 797 (929)
...++++..
T Consensus 227 ~~~a~r~~~ 235 (322)
T 1xwi_A 227 LMQPVRKVQ 235 (322)
T ss_dssp HTHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999887653
No 14
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.95 E-value=4.6e-28 Score=269.42 Aligned_cols=227 Identities=17% Similarity=0.287 Sum_probs=190.5
Q ss_pred cccccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEec
Q 002386 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (929)
Q Consensus 550 ~~~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~ 629 (929)
..++.+++|++.+++.+.+.+.. +..+++++.. +..++.++||+||||||||++|+++|++++ .++++++|
T Consensus 14 ~~~~~di~G~~~~~~~l~~~i~~--~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~~~------~~~~~v~~ 84 (322)
T 3eie_A 14 NVKWEDVAGLEGAKEALKEAVIL--PVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEAN------STFFSVSS 84 (322)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHH--HHHCGGGCCT-TCCCCCEEEEECSSSSCHHHHHHHHHHHHT------CEEEEEEH
T ss_pred CCCHHHhcChHHHHHHHHHHHHH--HHhCHHHHhc-CCCCCCeEEEECCCCCcHHHHHHHHHHHHC------CCEEEEch
Confidence 34578899999999999886642 2334555555 445677899999999999999999999987 88999999
Q ss_pred cccccCchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCCCc
Q 002386 630 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (929)
Q Consensus 630 s~L~~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (929)
+++.+.+.+...+.++.+|..+....|+||||||+|.+.+.+..... .....+...|+..+++..... .+
T Consensus 85 ~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~----~~~~~~~~~ll~~l~~~~~~~------~~ 154 (322)
T 3eie_A 85 SDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGES----EASRRIKTELLVQMNGVGNDS------QG 154 (322)
T ss_dssp HHHHTTTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC----------CCTHHHHHHHHHHHGGGGTSC------CC
T ss_pred HHHhhcccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcc----hHHHHHHHHHHHHhccccccC------Cc
Confidence 99999999999999999999999999999999999999864432221 223467777888888764322 25
Q ss_pred EEEEEecCCCCccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhhcccccCHHHHHHHHhhcCCCChhhHHHHHHHHH
Q 002386 710 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTV 789 (929)
Q Consensus 710 VivIattn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~d~~l~~LA~~teG~s~~DL~~Lv~~A~ 789 (929)
++||++||.++.+++++++ ||+..++++.|+.++|.+|++.++......+++..+..++..++||+++||..+|++|.
T Consensus 155 v~vi~atn~~~~ld~al~~--Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~l~~~a~ 232 (322)
T 3eie_A 155 VLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDAL 232 (322)
T ss_dssp EEEEEEESCGGGSCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHHHHHHHT
T ss_pred eEEEEecCChhhCCHHHHc--ccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 9999999999999999999 99999999999999999999999988777788999999999999999999999999999
Q ss_pred HHHhhccc
Q 002386 790 HAAVGRYL 797 (929)
Q Consensus 790 ~~a~~r~~ 797 (929)
..++++..
T Consensus 233 ~~a~r~~~ 240 (322)
T 3eie_A 233 MQPIRKIQ 240 (322)
T ss_dssp THHHHHHH
T ss_pred HHHHHHHh
Confidence 98887653
No 15
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.95 E-value=1.1e-27 Score=269.75 Aligned_cols=257 Identities=18% Similarity=0.288 Sum_probs=202.4
Q ss_pred cccccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEec
Q 002386 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (929)
Q Consensus 550 ~~~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~ 629 (929)
...+.+++|++.+++.+.+.+.. +..++++|.. +..+++++||+||||||||++|+++|++++ .+++.++|
T Consensus 47 ~~~~~di~G~~~~~~~l~~~v~~--~~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~------~~~~~v~~ 117 (355)
T 2qp9_X 47 NVKWEDVAGLEGAKEALKEAVIL--PVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEAN------STFFSVSS 117 (355)
T ss_dssp CCCGGGSCCGGGHHHHHHHHTHH--HHHCGGGGCS-SCCCCCCEEEECSTTSCHHHHHHHHHHHHT------CEEEEEEH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHH--HHhCHHHHhc-CCCCCceEEEECCCCCcHHHHHHHHHHHhC------CCEEEeeH
Confidence 34578899999999999886542 2234556655 456678899999999999999999999997 88999999
Q ss_pred cccccCchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCCCc
Q 002386 630 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (929)
Q Consensus 630 s~L~~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (929)
.++.+.+.+...+.++.+|..+....|+||||||+|.+.+.+... .......+...|+..|++..... .+
T Consensus 118 ~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~----~~~~~~~~~~~ll~~l~~~~~~~------~~ 187 (355)
T 2qp9_X 118 SDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEG----ESEASRRIKTELLVQMNGVGNDS------QG 187 (355)
T ss_dssp HHHHSCC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC----------CTHHHHHHHHHHHHHHHCC---------CC
T ss_pred HHHhhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCC----cchHHHHHHHHHHHHhhcccccC------CC
Confidence 999888888888999999999999999999999999998543222 22344577778888888764322 25
Q ss_pred EEEEEecCCCCccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhhcccccCHHHHHHHHhhcCCCChhhHHHHHHHHH
Q 002386 710 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTV 789 (929)
Q Consensus 710 VivIattn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~d~~l~~LA~~teG~s~~DL~~Lv~~A~ 789 (929)
++||++||.++.+++++++ ||+..+++++|+.++|.+||+.++...+..+++..+..|+..++||+++||..+|++|.
T Consensus 188 v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~l~~~A~ 265 (355)
T 2qp9_X 188 VLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDAL 265 (355)
T ss_dssp EEEEEEESCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred eEEEeecCCcccCCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 9999999999999999999 99999999999999999999999988777778899999999999999999999999999
Q ss_pred HHHhhccccCCc--------------------------------cccccccccccccccccccccccccc
Q 002386 790 HAAVGRYLHSDS--------------------------------SFEKHIKPTLVRDDFSQAMHEFLPVA 827 (929)
Q Consensus 790 ~~a~~r~~~~~~--------------------------------~~~~~~~~~lt~edf~~al~~~~P~s 827 (929)
+.++++...... .........|+++||..|++.+.|+.
T Consensus 266 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~Al~~~~ps~ 335 (355)
T 2qp9_X 266 MQPIRKIQSATHFKDVSTEDDETRKLTPSSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTV 335 (355)
T ss_dssp HHHHHHHHHCSEEEECCC-----CCEEEECTTSSSEEECCGGGSCGGGBCCCCBCHHHHHHHHHHSCCSS
T ss_pred HHHHHHHHHhhhhhhhccccccccccCcCCccccchhhcccccccccccccCCccHHHHHHHHHHcCCCC
Confidence 999876421100 00001124588888988888888764
No 16
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.95 E-value=9.4e-28 Score=264.39 Aligned_cols=260 Identities=21% Similarity=0.305 Sum_probs=203.2
Q ss_pred cccccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEec
Q 002386 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (929)
Q Consensus 550 ~~~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~ 629 (929)
..++++++|++.+++++.+.+... ..+++.|..++++++.++||+||||||||++|+++|.+++ .+++.++|
T Consensus 11 ~~~~~di~G~~~~~~~l~~~v~~~--~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~------~~~i~v~~ 82 (301)
T 3cf0_A 11 QVTWEDIGGLEDVKRELQELVQYP--VEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ------ANFISIKG 82 (301)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHHHH--HHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTT------CEEEEECH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHH--hhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhC------CCEEEEEh
Confidence 345778999999999999876532 2357788888999999999999999999999999999987 78999999
Q ss_pred cccccCchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCCCc
Q 002386 630 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (929)
Q Consensus 630 s~L~~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (929)
.++...+.+...+.+..+|..+....|++|||||+|.+.+.+....+... ....++...|+..++++... .+
T Consensus 83 ~~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~-~~~~~~~~~lL~~l~~~~~~-------~~ 154 (301)
T 3cf0_A 83 PELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGG-GAADRVINQILTEMDGMSTK-------KN 154 (301)
T ss_dssp HHHHHHHHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSS-CSCCHHHHHHHHHHHSSCTT-------SS
T ss_pred HHHHhhhcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcc-hHHHHHHHHHHHHhhcccCC-------CC
Confidence 99887777777778889999999899999999999999864322211111 11125566677777765422 25
Q ss_pred EEEEEecCCCCccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhhcccccCHHHHHHHHhhcCCCChhhHHHHHHHHH
Q 002386 710 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTV 789 (929)
Q Consensus 710 VivIattn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~d~~l~~LA~~teG~s~~DL~~Lv~~A~ 789 (929)
++||++||.++.++++++++|||+..++++.|+.++|.+|++.+++..++. .+..+..++..++||+++||+.+|++|+
T Consensus 155 v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~-~~~~~~~la~~~~g~sg~dl~~l~~~a~ 233 (301)
T 3cf0_A 155 VFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVA-KDVDLEFLAKMTNGFSGADLTEICQRAC 233 (301)
T ss_dssp EEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBC-SSCCHHHHHHTCSSCCHHHHHHHHHHHH
T ss_pred EEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCC-ccchHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998875543 3344778999999999999999999999
Q ss_pred HHHhhccccCCcc-----------cc---cccccccccccccccccccccc
Q 002386 790 HAAVGRYLHSDSS-----------FE---KHIKPTLVRDDFSQAMHEFLPV 826 (929)
Q Consensus 790 ~~a~~r~~~~~~~-----------~~---~~~~~~lt~edf~~al~~~~P~ 826 (929)
..+..+....... .. ......++++||.+|++...|+
T Consensus 234 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~~s 284 (301)
T 3cf0_A 234 KLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRS 284 (301)
T ss_dssp HHHHHHHHHHHC--------------------CCCBCHHHHHHHHTTCCCS
T ss_pred HHHHHHHHHhhhhhhhhcccccccccccccccCCccCHHHHHHHHHHcCCC
Confidence 9888765311000 00 0112468889999998887764
No 17
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.95 E-value=1.6e-27 Score=276.04 Aligned_cols=248 Identities=23% Similarity=0.313 Sum_probs=200.7
Q ss_pred cccccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEec
Q 002386 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (929)
Q Consensus 550 ~~~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~ 629 (929)
..++.+++|.+..++++.+.+..+. .+..+..++...++++||+||||||||++|+++|.+++ .++++++|
T Consensus 12 ~~~f~di~G~~~~~~~l~e~v~~l~---~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~------~~f~~is~ 82 (476)
T 2ce7_A 12 RVTFKDVGGAEEAIEELKEVVEFLK---DPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEAN------VPFFHISG 82 (476)
T ss_dssp CCCGGGCCSCHHHHHHHHHHHHHHH---CTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHT------CCEEEEEG
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHhh---ChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcC------CCeeeCCH
Confidence 4467899999999999988665443 35577888888999999999999999999999999987 78999999
Q ss_pred cccccCchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCCCc
Q 002386 630 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (929)
Q Consensus 630 s~L~~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (929)
+++.....+.....++.+|..|....|+||||||+|.+.+.+....+. ......+....|+..|+++.... +
T Consensus 83 ~~~~~~~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g-~~~~~~~~l~~LL~~ld~~~~~~-------~ 154 (476)
T 2ce7_A 83 SDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGG-GHDEREQTLNQLLVEMDGFDSKE-------G 154 (476)
T ss_dssp GGTTTCCTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC----------CHHHHHHHHHHHHHHHSCGGG-------T
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCc-CcHHHHHHHHHHHHHHhccCCCC-------C
Confidence 999888888888889999999999999999999999997543322111 22233466777778888765322 5
Q ss_pred EEEEEecCCCCccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhhcccccCHHHHHHHHhhcCCCChhhHHHHHHHHH
Q 002386 710 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTV 789 (929)
Q Consensus 710 VivIattn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~d~~l~~LA~~teG~s~~DL~~Lv~~A~ 789 (929)
++||++||.++.+++++++++||+..+.++.|+.++|.+|++.++++..+. ++..+..++..+.||+++||.++|++|+
T Consensus 155 viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~-~~v~l~~la~~t~G~sgadL~~lv~~Aa 233 (476)
T 2ce7_A 155 IIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLA-EDVNLEIIAKRTPGFVGADLENLVNEAA 233 (476)
T ss_dssp EEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBC-TTCCHHHHHHTCTTCCHHHHHHHHHHHH
T ss_pred EEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCc-chhhHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999988765443 2334788999999999999999999998
Q ss_pred HHHhhccccCCcccccccccccccccccccccccccc
Q 002386 790 HAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLPV 826 (929)
Q Consensus 790 ~~a~~r~~~~~~~~~~~~~~~lt~edf~~al~~~~P~ 826 (929)
..+..+ +...++.+||..++....+.
T Consensus 234 l~A~~~-----------~~~~I~~~dl~~al~~v~~~ 259 (476)
T 2ce7_A 234 LLAARE-----------GRDKITMKDFEEAIDRVIAG 259 (476)
T ss_dssp HHHHHT-----------TCSSBCHHHHHHHHHHHC--
T ss_pred HHHHHc-----------CCCeecHHHHHHHHHHHhcC
Confidence 888754 23568999999988876653
No 18
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.94 E-value=3e-26 Score=246.09 Aligned_cols=250 Identities=23% Similarity=0.290 Sum_probs=183.6
Q ss_pred ccccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEecc
Q 002386 551 SNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCS 630 (929)
Q Consensus 551 ~~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s 630 (929)
..+++++|++..++.+.+.+..+.. ++.+..++...++++||+||||||||++|+++|++++ .++++++|.
T Consensus 3 ~~~~~i~G~~~~~~~l~~~~~~~~~---~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~------~~~~~~~~~ 73 (262)
T 2qz4_A 3 VSFKDVAGMHEAKLEVREFVDYLKS---PERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQ------VPFLAMAGA 73 (262)
T ss_dssp CCTTSSCSCHHHHHHHHHHHHHHHC---CC------CCCCCEEEEESCTTSSHHHHHHHHHHHHT------CCEEEEETT
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHC---HHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhC------CCEEEechH
Confidence 3567899999999988876654333 4466777888899999999999999999999999987 789999999
Q ss_pred ccccCchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCCCcE
Q 002386 631 RLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPI 710 (929)
Q Consensus 631 ~L~~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V 710 (929)
.+.....+.....+..+|..+....|++|||||+|.+...+...............+..|+..++..... .++
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~-------~~~ 146 (262)
T 2qz4_A 74 EFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTT-------DHV 146 (262)
T ss_dssp TTSSSSTTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTT-------CCE
T ss_pred HHHhhccChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCC-------CCE
Confidence 9988888888888999999999889999999999999754322111111111223344455555544321 258
Q ss_pred EEEEecCCCCccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhhcccccCHHH-HHHHHhhcCCCChhhHHHHHHHHH
Q 002386 711 AFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEI-LLDVASKCDGYDAYDLEILVDRTV 789 (929)
Q Consensus 711 ivIattn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~d~~-l~~LA~~teG~s~~DL~~Lv~~A~ 789 (929)
++|+|+|.++.+++++.+++||+..+++++|+.++|.+|++.++...+...+... ...++..+.||+++||..++++|.
T Consensus 147 ~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~~a~ 226 (262)
T 2qz4_A 147 IVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAA 226 (262)
T ss_dssp EEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHHHHH
T ss_pred EEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999988777666553 578999999999999999999998
Q ss_pred HHHhhccccCCccccccccccccccccccccccccccc
Q 002386 790 HAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLPVA 827 (929)
Q Consensus 790 ~~a~~r~~~~~~~~~~~~~~~lt~edf~~al~~~~P~s 827 (929)
..+..+ +...++.+||..++....+..
T Consensus 227 ~~a~~~-----------~~~~i~~~d~~~a~~~~~~~~ 253 (262)
T 2qz4_A 227 LHAARE-----------GHTSVHTLNFEYAVERVLAGT 253 (262)
T ss_dssp TC-------------------CCBCCHHHHHHHHHHHH
T ss_pred HHHHHc-----------CCCCCCHHHHHHHHHHhccCh
Confidence 777654 235689999999988876654
No 19
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.94 E-value=3.5e-26 Score=249.14 Aligned_cols=249 Identities=23% Similarity=0.353 Sum_probs=202.0
Q ss_pred cccccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEec
Q 002386 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (929)
Q Consensus 550 ~~~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~ 629 (929)
...+.+++|++.+++++.+.+...+ ..++.+..++...+.++||+||||||||++|+++|+.++ .++++++|
T Consensus 13 ~~~~~~i~G~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~------~~~~~v~~ 84 (285)
T 3h4m_A 13 NVRYEDIGGLEKQMQEIREVVELPL--KHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETN------ATFIRVVG 84 (285)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHH--HCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTT------CEEEEEEG
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHh--hCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhC------CCEEEEeh
Confidence 3457789999999999988765322 356788888888999999999999999999999999987 88999999
Q ss_pred cccccCchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCCCc
Q 002386 630 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (929)
Q Consensus 630 s~L~~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (929)
..+.+...+.....+..+|..+....|+||||||+|.+++.+.+....... .....+..+...++.+... .+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~-~~~~~l~~ll~~~~~~~~~-------~~ 156 (285)
T 3h4m_A 85 SELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDR-EVQRTLMQLLAEMDGFDAR-------GD 156 (285)
T ss_dssp GGGCCCSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGG-HHHHHHHHHHHHHHTTCSS-------SS
T ss_pred HHHHHhccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccH-HHHHHHHHHHHHhhCCCCC-------CC
Confidence 999999999999999999999999999999999999998644333222122 2223333344444443321 25
Q ss_pred EEEEEecCCCCccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhhcccccCHHHHHHHHhhcCCCChhhHHHHHHHHH
Q 002386 710 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTV 789 (929)
Q Consensus 710 VivIattn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~d~~l~~LA~~teG~s~~DL~~Lv~~A~ 789 (929)
+++|+|+|.++.+++++++++||+..+.+++|+.++|.+|++.++...... .+..+..++..+.||+++|+..++++|.
T Consensus 157 ~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~l~~~~~g~~~~~i~~l~~~a~ 235 (285)
T 3h4m_A 157 VKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLA-EDVNLEEIAKMTEGCVGAELKAICTEAG 235 (285)
T ss_dssp EEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBC-TTCCHHHHHHHCTTCCHHHHHHHHHHHH
T ss_pred EEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCC-CcCCHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999988765443 3335789999999999999999999999
Q ss_pred HHHhhccccCCcccccccccccccccccccccccccc
Q 002386 790 HAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLPV 826 (929)
Q Consensus 790 ~~a~~r~~~~~~~~~~~~~~~lt~edf~~al~~~~P~ 826 (929)
..|..+ ....++.+||.+++..+.+.
T Consensus 236 ~~a~~~-----------~~~~I~~~d~~~al~~~~~~ 261 (285)
T 3h4m_A 236 MNAIRE-----------LRDYVTMDDFRKAVEKIMEK 261 (285)
T ss_dssp HHHHHT-----------TCSSBCHHHHHHHHHHHHHH
T ss_pred HHHHHh-----------ccCcCCHHHHHHHHHHHHhc
Confidence 988876 23569999999999887654
No 20
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.94 E-value=1.3e-26 Score=268.54 Aligned_cols=226 Identities=22% Similarity=0.304 Sum_probs=178.2
Q ss_pred cccccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHh-ccCccceeeEEEEe
Q 002386 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSL-EHHKDLVAHIVFVC 628 (929)
Q Consensus 550 ~~~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L-~~~~~~~~~~~~V~ 628 (929)
...+++++|++.+++.+.+.+. ++..++++|.. +..+++++||+||||||||++|+++|.++ + .+++.++
T Consensus 130 ~~~~~di~G~~~~k~~l~~~v~--~p~~~~~~~~~-~~~~~~~vLL~GppGtGKT~lA~aia~~~~~------~~~~~v~ 200 (444)
T 2zan_A 130 NVKWSDVAGLEGAKEALKEAVI--LPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANN------STFFSIS 200 (444)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHT--HHHHCTTTTSG-GGCCCSEEEEECSTTSSHHHHHHHHHHHCCS------SEEEEEC
T ss_pred CCCHHHhcCHHHHHHHHHHHHH--HHhhCHHHhhc-cCCCCceEEEECCCCCCHHHHHHHHHHHcCC------CCEEEEe
Confidence 4567899999999999988653 22223445543 24556889999999999999999999998 4 6789999
Q ss_pred ccccccCchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCCC
Q 002386 629 CSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIG 708 (929)
Q Consensus 629 ~s~L~~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~ 708 (929)
|+++.+.+.+.....++.+|..+....|+||||||+|.+++.+.... .....++...|+..|++.... ..
T Consensus 201 ~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~----~~~~~~~~~~lL~~l~~~~~~------~~ 270 (444)
T 2zan_A 201 SSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENE----SEAARRIKTEFLVQMQGVGVD------ND 270 (444)
T ss_dssp CC---------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCC----CGGGHHHHHHHHTTTTCSSCC------CS
T ss_pred HHHHHhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCcc----ccHHHHHHHHHHHHHhCcccC------CC
Confidence 99998888888778889999999999999999999999986433321 223346666676766654321 12
Q ss_pred cEEEEEecCCCCccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhhcccccCHHHHHHHHhhcCCCChhhHHHHHHHH
Q 002386 709 PIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRT 788 (929)
Q Consensus 709 ~VivIattn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~d~~l~~LA~~teG~s~~DL~~Lv~~A 788 (929)
+++||+|||.++.++++++| ||+..+.++.|+.++|.+|++.++...+..+++..+..|+..++||+++||..+|++|
T Consensus 271 ~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~a 348 (444)
T 2zan_A 271 GILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDA 348 (444)
T ss_dssp SCEEEEEESCGGGSCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred CEEEEecCCCccccCHHHHh--hcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 59999999999999999999 9999999999999999999999998877778899999999999999999999999999
Q ss_pred HHHHhhcc
Q 002386 789 VHAAVGRY 796 (929)
Q Consensus 789 ~~~a~~r~ 796 (929)
...++++.
T Consensus 349 ~~~a~r~~ 356 (444)
T 2zan_A 349 LMQPVRKV 356 (444)
T ss_dssp HTHHHHHH
T ss_pred HHHHHHHH
Confidence 99888764
No 21
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.94 E-value=1.7e-25 Score=240.31 Aligned_cols=245 Identities=21% Similarity=0.281 Sum_probs=191.7
Q ss_pred cccccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEec
Q 002386 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (929)
Q Consensus 550 ~~~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~ 629 (929)
...+++++|++..++++.+.+..+.. +..+..++...+.++||+||||||||++|+++|+.++ .++++++|
T Consensus 8 ~~~~~~i~G~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~------~~~~~i~~ 78 (257)
T 1lv7_A 8 KTTFADVAGCDEAKEEVAELVEYLRE---PSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAK------VPFFTISG 78 (257)
T ss_dssp CCCGGGSCSCHHHHHHTHHHHHHHHC---GGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHT------CCEEEECS
T ss_pred CCCHHHhcCcHHHHHHHHHHHHHHhC---HHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcC------CCEEEEeH
Confidence 44678999999999998876654333 4456677788888999999999999999999999986 67899999
Q ss_pred cccccCchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCCCc
Q 002386 630 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (929)
Q Consensus 630 s~L~~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (929)
+++.....+...+.+..+|..+....|+++||||+|.+.+.+...... ...........++..++.+... .+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~-~~~~~~~~~~~ll~~l~~~~~~-------~~ 150 (257)
T 1lv7_A 79 SDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGG-GHDEREQTLNQMLVEMDGFEGN-------EG 150 (257)
T ss_dssp CSSTTSCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCC-TTCHHHHHHHHHHHHHHTCCSS-------SC
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCC-CchHHHHHHHHHHHHhhCcccC-------CC
Confidence 998877777777888999999988889999999999997533322111 1222335566666777765432 25
Q ss_pred EEEEEecCCCCccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhhcccccCHHHHHHHHhhcCCCChhhHHHHHHHHH
Q 002386 710 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTV 789 (929)
Q Consensus 710 VivIattn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~d~~l~~LA~~teG~s~~DL~~Lv~~A~ 789 (929)
+++|++||.++.+++++.+++||+..++++.|+.++|.+|++.++.+..+. ++..+..++..+.||+++||..+|++|.
T Consensus 151 ~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~-~~~~~~~la~~~~G~~~~dl~~l~~~a~ 229 (257)
T 1lv7_A 151 IIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLA-PDIDAAIIARGTPGFSGADLANLVNEAA 229 (257)
T ss_dssp EEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBC-TTCCHHHHHHTCTTCCHHHHHHHHHHHH
T ss_pred EEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCC-ccccHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999988764432 2334678999999999999999999999
Q ss_pred HHHhhccccCCccccccccccccccccccccccc
Q 002386 790 HAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEF 823 (929)
Q Consensus 790 ~~a~~r~~~~~~~~~~~~~~~lt~edf~~al~~~ 823 (929)
..|..+ +...++.+||.+++...
T Consensus 230 ~~a~~~-----------~~~~i~~~~~~~a~~~~ 252 (257)
T 1lv7_A 230 LFAARG-----------NKRVVSMVEFEKAKDKI 252 (257)
T ss_dssp HHHHHT-----------TCSSBCHHHHHHHHHHH
T ss_pred HHHHHh-----------CCCcccHHHHHHHHHHH
Confidence 888765 23568999998887754
No 22
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.93 E-value=9.7e-25 Score=239.31 Aligned_cols=259 Identities=19% Similarity=0.263 Sum_probs=199.5
Q ss_pred cccccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEec
Q 002386 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (929)
Q Consensus 550 ~~~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~ 629 (929)
...+.+++|.+..++.+.+.+.. +..+++++...+ .++.++||+||||||||++|+++|++++ .+++.++|
T Consensus 17 ~~~~~~i~G~~~~~~~l~~~i~~--~~~~~~~~~~~~-~~~~~vll~Gp~GtGKT~la~~la~~~~------~~~~~i~~ 87 (297)
T 3b9p_A 17 KVEWTDIAGQDVAKQALQEMVIL--PSVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVATECS------ATFLNISA 87 (297)
T ss_dssp CCCGGGSCCCHHHHHHHHHHTHH--HHHCGGGSCGGG-CCCSEEEEESSSSSCHHHHHHHHHHHTT------CEEEEEES
T ss_pred CCCHHHhCChHHHHHHHHHHHHh--hhhCHHHHhcCC-CCCCeEEEECcCCCCHHHHHHHHHHHhC------CCeEEeeH
Confidence 44577899999999998886542 122344555444 3467899999999999999999999987 78999999
Q ss_pred cccccCchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCCCc
Q 002386 630 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (929)
Q Consensus 630 s~L~~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (929)
+.+.+...+.....++.+|..+....|++|||||+|.+.+.+...... ....+...|+..+++...... ..+
T Consensus 88 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~----~~~~~~~~ll~~l~~~~~~~~----~~~ 159 (297)
T 3b9p_A 88 ASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHE----ASRRLKTEFLVEFDGLPGNPD----GDR 159 (297)
T ss_dssp TTTSSSSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----C----CSHHHHHHHHHHHHHCC----------C
T ss_pred HHHhhcccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcch----HHHHHHHHHHHHHhcccccCC----CCc
Confidence 999988888888889999999998999999999999998643322211 123556667777776543211 125
Q ss_pred EEEEEecCCCCccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhhcccccCHHHHHHHHhhcCCCChhhHHHHHHHHH
Q 002386 710 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTV 789 (929)
Q Consensus 710 VivIattn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~d~~l~~LA~~teG~s~~DL~~Lv~~A~ 789 (929)
+++|++||.++.+++++.+ ||+..+.++.|+.++|.+|++.++...+..++++.+..++..+.||+++||..+|+.|.
T Consensus 160 v~vi~~tn~~~~l~~~l~~--R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~~l~~~a~ 237 (297)
T 3b9p_A 160 IVVLAATNRPQELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAA 237 (297)
T ss_dssp EEEEEEESCGGGBCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred EEEEeecCChhhCCHHHHh--hCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 8999999999999999999 99999999999999999999999988777788999999999999999999999999999
Q ss_pred HHHhhccccCC-ccccccccccccccccccccccccccc
Q 002386 790 HAAVGRYLHSD-SSFEKHIKPTLVRDDFSQAMHEFLPVA 827 (929)
Q Consensus 790 ~~a~~r~~~~~-~~~~~~~~~~lt~edf~~al~~~~P~s 827 (929)
..++++..... ..........++.+||..|+....|+.
T Consensus 238 ~~a~r~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~~s~ 276 (297)
T 3b9p_A 238 LEPIRELNVEQVKCLDISAMRAITEQDFHSSLKRIRRSV 276 (297)
T ss_dssp THHHHTCC--------CCCCCCCCHHHHHHHTTSCCCSS
T ss_pred HHHHHHHhhhhcccccccccCCcCHHHHHHHHHHcCCCC
Confidence 88887642110 001111235689999999988877754
No 23
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.92 E-value=1.5e-25 Score=261.06 Aligned_cols=247 Identities=21% Similarity=0.294 Sum_probs=197.6
Q ss_pred cccccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEec
Q 002386 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (929)
Q Consensus 550 ~~~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~ 629 (929)
..++.++.|.+..++++.+.+..+. .+..+..++...+.++||+||||||||+||+++|.++. .++++++|
T Consensus 27 ~~~f~dv~G~~~~k~~l~~lv~~l~---~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~------~~~i~i~g 97 (499)
T 2dhr_A 27 KVTFKDVAGAEEAKEELKEIVEFLK---NPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR------VPFITASG 97 (499)
T ss_dssp CCCTTSSCSCHHHHHHHHHHHHHHH---CGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTT------CCEEEEEG
T ss_pred CCCHHHcCCcHHHHHHHHHHHHHhh---chhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC------CCEEEEeh
Confidence 4567899999999998887654433 34567788888889999999999999999999999986 77899999
Q ss_pred cccccCchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCCCc
Q 002386 630 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (929)
Q Consensus 630 s~L~~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (929)
+++.....+.....+..+|+.+....|+++||||+|.+...+....+ .......+.++.++..|++.... ..
T Consensus 98 ~~~~~~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~-~~~~e~~~~l~~LL~~Ldg~~~~-------~~ 169 (499)
T 2dhr_A 98 SDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVG-GGNDEREQTLNQLLVEMDGFEKD-------TA 169 (499)
T ss_dssp GGGTSSCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTT-TSSHHHHHHHHHHHHHGGGCCSS-------CC
T ss_pred hHHHHhhhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcC-CCcHHHHHHHHHHHHHhcccccC-------cc
Confidence 99988888888888999999988788999999999998753322111 12233345566666666655422 24
Q ss_pred EEEEEecCCCCccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhhcccccC-HHHHHHHHhhcCCCChhhHHHHHHHH
Q 002386 710 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECS-DEILLDVASKCDGYDAYDLEILVDRT 788 (929)
Q Consensus 710 VivIattn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~-d~~l~~LA~~teG~s~~DL~~Lv~~A 788 (929)
+++++++|.++.+|+++.|++||+..+.++.|+.++|.+||+.+++.. .++ +..+..+|..+.||+++||+++|++|
T Consensus 170 viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~--~l~~dv~l~~lA~~t~G~~gadL~~lv~~A 247 (499)
T 2dhr_A 170 IVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGK--PLAEDVDLALLAKRTPGFVGADLENLLNEA 247 (499)
T ss_dssp CEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSS--CCCCSSTTHHHHTTSCSCCHHHHHHHHHHH
T ss_pred EEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcC--CCChHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999877543 333 33478899999999999999999999
Q ss_pred HHHHhhccccCCcccccccccccccccccccccccccc
Q 002386 789 VHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLPV 826 (929)
Q Consensus 789 ~~~a~~r~~~~~~~~~~~~~~~lt~edf~~al~~~~P~ 826 (929)
+..+..+ +...++.+||..++....+.
T Consensus 248 a~~A~~~-----------~~~~It~~dl~~al~~v~~~ 274 (499)
T 2dhr_A 248 ALLAARE-----------GRRKITMKDLEEAADRVMML 274 (499)
T ss_dssp HHHHTTT-----------CCSSCCSHHHHHHHHHHTTC
T ss_pred HHHHHHh-----------CCCccCHHHHHHHHHHHhcc
Confidence 8877654 22568999999988876554
No 24
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.92 E-value=1.3e-24 Score=245.01 Aligned_cols=257 Identities=19% Similarity=0.253 Sum_probs=199.5
Q ss_pred ccccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEecc
Q 002386 551 SNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCS 630 (929)
Q Consensus 551 ~~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s 630 (929)
..+++++|++..++.+.+.+...+ ..++++...+ .++.++||+||||||||++|+++|++++ ..+++++|+
T Consensus 81 ~~~~~i~G~~~~~~~l~~~i~~~~--~~~~~~~~~~-~~~~~vLl~GppGtGKT~la~aia~~~~------~~~~~i~~~ 151 (357)
T 3d8b_A 81 VNWEDIAGVEFAKATIKEIVVWPM--LRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCIASQSG------ATFFSISAS 151 (357)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHH--HCTTTSCGGG-SCCSEEEEESSTTSSHHHHHHHHHHHTT------CEEEEEEGG
T ss_pred CCHHHhCChHHHHHHHHHHHHHHh--hChHhHhhcc-CCCceEEEECCCCCCHHHHHHHHHHHcC------CeEEEEehH
Confidence 456789999999999988764211 1233444443 4567899999999999999999999987 789999999
Q ss_pred ccccCchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCCCcE
Q 002386 631 RLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPI 710 (929)
Q Consensus 631 ~L~~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V 710 (929)
++.+.+.+.....++.+|..+....|+||||||+|.+.+.+.... ......+...|+..+++..... ..++
T Consensus 152 ~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~----~~~~~~~~~~lL~~l~~~~~~~-----~~~v 222 (357)
T 3d8b_A 152 SLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGE----HESSRRIKTEFLVQLDGATTSS-----EDRI 222 (357)
T ss_dssp GGCCSSTTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC----------CHHHHHHHHHHHHHHC----C-----CCCE
T ss_pred HhhccccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCc----chHHHHHHHHHHHHHhcccccC-----CCCE
Confidence 999988899999999999999989999999999999986432211 2233456666667777543211 1259
Q ss_pred EEEEecCCCCccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhhcccccCHHHHHHHHhhcCCCChhhHHHHHHHHHH
Q 002386 711 AFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVH 790 (929)
Q Consensus 711 ivIattn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~d~~l~~LA~~teG~s~~DL~~Lv~~A~~ 790 (929)
+||++||.++.+++++++ ||+..++++.|+.++|.+|++.++...+..++++.+..++..++||+++||..+|+.|..
T Consensus 223 ~vI~atn~~~~l~~~l~~--Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~~~a~~ 300 (357)
T 3d8b_A 223 LVVGATNRPQEIDEAARR--RLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASL 300 (357)
T ss_dssp EEEEEESCGGGBCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHT
T ss_pred EEEEecCChhhCCHHHHh--hCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 999999999999999999 999999999999999999999999887778899999999999999999999999999998
Q ss_pred HHhhccccCCc-cccccccccccccccccccccccccc
Q 002386 791 AAVGRYLHSDS-SFEKHIKPTLVRDDFSQAMHEFLPVA 827 (929)
Q Consensus 791 ~a~~r~~~~~~-~~~~~~~~~lt~edf~~al~~~~P~s 827 (929)
.++++...... .........|+.+||..++..+.|+.
T Consensus 301 ~~ir~l~~~~~~~~~~~~~~~i~~~d~~~al~~~~ps~ 338 (357)
T 3d8b_A 301 GPIRSLQTADIATITPDQVRPIAYIDFENAFRTVRPSV 338 (357)
T ss_dssp HHHHHCCC----------CCCBCHHHHHHHHHHHGGGC
T ss_pred HHHHHhhhhhhccccccccCCcCHHHHHHHHHhcCCCC
Confidence 88775321100 01112235789999999999888754
No 25
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.92 E-value=1.7e-24 Score=246.94 Aligned_cols=256 Identities=17% Similarity=0.240 Sum_probs=193.0
Q ss_pred cccccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEec
Q 002386 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (929)
Q Consensus 550 ~~~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~ 629 (929)
...+++++|.+.+++.+.+.+.... .+++++...+ .++.++||+||||||||++|+++|++++ .++++++|
T Consensus 111 ~~~~~~iiG~~~~~~~l~~~~~~~~--~~~~~~~~~~-~~~~~vLL~GppGtGKT~la~aia~~~~------~~~~~v~~ 181 (389)
T 3vfd_A 111 AVKFDDIAGQDLAKQALQEIVILPS--LRPELFTGLR-APARGLLLFGPPGNGKTMLAKAVAAESN------ATFFNISA 181 (389)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHH--HCTTTSCGGG-CCCSEEEEESSTTSCHHHHHHHHHHHTT------CEEEEECS
T ss_pred CCChHHhCCHHHHHHHHHHHHHHhc--cCHHHhcccC-CCCceEEEECCCCCCHHHHHHHHHHhhc------CcEEEeeH
Confidence 4567899999999999988664221 2344555554 3467899999999999999999999987 88999999
Q ss_pred cccccCchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCCCc
Q 002386 630 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (929)
Q Consensus 630 s~L~~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (929)
..+.+.+.+.....+..+|..+....|+||||||+|.++..+.... ......+...|+..+++...... .+
T Consensus 182 ~~l~~~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~----~~~~~~~~~~ll~~l~~~~~~~~-----~~ 252 (389)
T 3vfd_A 182 ASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGE----HDASRRLKTEFLIEFDGVQSAGD-----DR 252 (389)
T ss_dssp CCC-------CHHHHHHHHHHHHHSSSEEEEEETGGGGC------------CTHHHHHHHHHHHHHHHC----------C
T ss_pred HHhhccccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCcc----chHHHHHHHHHHHHhhcccccCC-----CC
Confidence 9999988888888999999999999999999999999985332221 12334666777777877654211 25
Q ss_pred EEEEEecCCCCccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhhcccccCHHHHHHHHhhcCCCChhhHHHHHHHHH
Q 002386 710 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTV 789 (929)
Q Consensus 710 VivIattn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~d~~l~~LA~~teG~s~~DL~~Lv~~A~ 789 (929)
++||++||.++.+++++++ ||...++++.|+.++|.+|++.++...+..++++.+..++..++||++++|..|++.|.
T Consensus 253 v~vI~atn~~~~l~~~l~~--R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~~~a~ 330 (389)
T 3vfd_A 253 VLVMGATNRPQELDEAVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAA 330 (389)
T ss_dssp EEEEEEESCGGGCCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred EEEEEecCCchhcCHHHHc--CcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 9999999999999999999 99999999999999999999999988888889999999999999999999999999999
Q ss_pred HHHhhccccCCc-cccccccccccccccccccccccc
Q 002386 790 HAAVGRYLHSDS-SFEKHIKPTLVRDDFSQAMHEFLP 825 (929)
Q Consensus 790 ~~a~~r~~~~~~-~~~~~~~~~lt~edf~~al~~~~P 825 (929)
..++++...... .........++.+||..++....|
T Consensus 331 ~~~~rel~~~~~~~~~~~~~~~i~~~d~~~al~~~~~ 367 (389)
T 3vfd_A 331 LGPIRELKPEQVKNMSASEMRNIRLSDFTESLKKIKR 367 (389)
T ss_dssp THHHHTSCCC---CCSSSCCCCCCHHHHHHHHHHCCC
T ss_pred HHHHHhhhhhhhhccchhhcCCcCHHHHHHHHHHcCC
Confidence 888876421110 011112346788888887776554
No 26
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.91 E-value=2.9e-24 Score=265.57 Aligned_cols=320 Identities=15% Similarity=0.173 Sum_probs=212.8
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCcc----ceeeEEEE
Q 002386 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKD----LVAHIVFV 627 (929)
Q Consensus 552 ~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~----~~~~~~~V 627 (929)
+++.+.|.+..++.+++.+. ...+.++||+||||||||++|+++|+.+..... ....++.+
T Consensus 184 ~~d~~iGr~~~i~~l~~~l~---------------~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~ 248 (758)
T 1r6b_X 184 GIDPLIGREKELERAIQVLC---------------RRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL 248 (758)
T ss_dssp CSCCCCSCHHHHHHHHHHHT---------------SSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEEC
T ss_pred CCCCccCCHHHHHHHHHHHh---------------ccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEE
Confidence 45678888888888776432 123467999999999999999999999843211 12456777
Q ss_pred eccccc--cCchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCcc
Q 002386 628 CCSRLS--LEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSC 705 (929)
Q Consensus 628 ~~s~L~--~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~ 705 (929)
++..+. ..+.+..++.++.+|..+....+.+|||||+|.+++...... . .....+.|...+ ..
T Consensus 249 ~~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~---~---~~~~~~~L~~~l----~~----- 313 (758)
T 1r6b_X 249 DIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASG---G---QVDAANLIKPLL----SS----- 313 (758)
T ss_dssp CCC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSS---C---HHHHHHHHSSCS----SS-----
T ss_pred cHHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCc---c---hHHHHHHHHHHH----hC-----
Confidence 777665 345677888899999999877889999999999985322111 1 112233332222 11
Q ss_pred CCCcEEEEEecCCCC-----ccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhh----cccccCHHHHHHHHhhcCC-
Q 002386 706 GIGPIAFVASAQSLE-----KIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQR----RSLECSDEILLDVASKCDG- 775 (929)
Q Consensus 706 ~~~~VivIattn~~~-----~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~----~~~~~~d~~l~~LA~~teG- 775 (929)
+.+.+|++++..+ .++++|.+ ||. .+.|+.|+.++|.+|++.++.. .+..++++.+..++..+.|
T Consensus 314 --~~~~~I~at~~~~~~~~~~~d~aL~~--Rf~-~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~~s~~~ 388 (758)
T 1r6b_X 314 --GKIRVIGSTTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKY 388 (758)
T ss_dssp --CCCEEEEEECHHHHHCCCCCTTSSGG--GEE-EEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHH
T ss_pred --CCeEEEEEeCchHHhhhhhcCHHHHh--Cce-EEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhh
Confidence 2478888887643 46788998 998 7999999999999999987754 4566788888888777655
Q ss_pred ----CChhhHHHHHHHHHHHHhhccccCCccccccccccccccccccccccccccccccccccc---cC-CCCCccCCCC
Q 002386 776 ----YDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLPVAMRDITKTS---AE-GGRSGWDDVG 847 (929)
Q Consensus 776 ----~s~~DL~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~lt~edf~~al~~~~P~slr~v~l~~---~~-~~~~~w~dIg 847 (929)
+.+..+..++++|...+.... .......++.+|+.+++..++......+.... .. ....-..++.
T Consensus 389 i~~~~lp~~~i~lld~a~~~~~~~~-------~~~~~~~v~~~di~~~~~~~~~ip~~~~~~~~~~~l~~l~~~l~~~v~ 461 (758)
T 1r6b_X 389 INDRHLPDKAIDVIDEAGARARLMP-------VSKRKKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKMLVF 461 (758)
T ss_dssp CTTSCTTHHHHHHHHHHHHHHHHSS-------SCCCCCSCCHHHHHHHHHHHSCCCCCCSSSSHHHHHHHHHHHHTTTSC
T ss_pred cccccCchHHHHHHHHHHHHHhccc-------ccccCCccCHHHHHHHHHHhcCCCccccchhHHHHHHHHHHHHHhhcc
Confidence 455567778888765443210 01123457888888877765422111110000 00 0001123467
Q ss_pred CchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHcCCceEEEeccccccc
Q 002386 848 GLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNK 917 (929)
Q Consensus 848 GL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~glnfIsVkg~ELl~k 917 (929)
|.+++++.+...+... ..--..+-++..++||+||||||||++|+++|+.++.+|+.++++++..+
T Consensus 462 g~~~~~~~l~~~i~~~----~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~ 527 (758)
T 1r6b_X 462 GQDKAIEALTEAIKMA----RAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMER 527 (758)
T ss_dssp SCHHHHHHHHHHHHHH----HTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSS
T ss_pred CHHHHHHHHHHHHHHH----hcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcch
Confidence 8888887777765421 00001123455679999999999999999999999999999999998765
No 27
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.91 E-value=8.9e-24 Score=226.51 Aligned_cols=241 Identities=22% Similarity=0.299 Sum_probs=185.2
Q ss_pred cccccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEec
Q 002386 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (929)
Q Consensus 550 ~~~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~ 629 (929)
..++++++|.+..+.++.+....+. .+..+...+...+.+++|+|||||||||+++++|..+. ..++.+++
T Consensus 12 ~~~~~~i~g~~~~~~~l~~l~~~~~---~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~------~~~i~~~~ 82 (254)
T 1ixz_A 12 KVTFKDVAGAEEAKEELKEIVEFLK---NPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR------VPFITASG 82 (254)
T ss_dssp SCCGGGCCSCHHHHHHHHHHHHHHH---CHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTT------CCEEEEEH
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHHH---CHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhC------CCEEEeeH
Confidence 4457788999988888776444332 34567777888888899999999999999999999986 67888888
Q ss_pred cccccCchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCCCc
Q 002386 630 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (929)
Q Consensus 630 s~L~~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (929)
.++.....+...+.+..+|+.+....|+++|+||+|.+...+....+ ............+...+++..... .
T Consensus 83 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~-~~~~~~~~~~~~ll~~l~g~~~~~-------~ 154 (254)
T 1ixz_A 83 SDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVG-GGNDEREQTLNQLLVEMDGFEKDT-------A 154 (254)
T ss_dssp HHHHHSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC----------CHHHHHHHHHHHHHHHTCCTTC-------C
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCcccc-ccchHHHHHHHHHHHHHhCCCCCC-------C
Confidence 88776666777778889999988778999999999998753321111 112233455566666666543321 4
Q ss_pred EEEEEecCCCCccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhhcccccC-HHHHHHHHhhcCCCChhhHHHHHHHH
Q 002386 710 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECS-DEILLDVASKCDGYDAYDLEILVDRT 788 (929)
Q Consensus 710 VivIattn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~-d~~l~~LA~~teG~s~~DL~~Lv~~A 788 (929)
++++++++.++.+|+++.+++||+..++++.|+.++|.+||+.+++.. .+. +..+..+|..++||+++||+.++++|
T Consensus 155 ~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~--~~~~~~~~~~la~~~~G~~~~dl~~~~~~a 232 (254)
T 1ixz_A 155 IVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGK--PLAEDVDLALLAKRTPGFVGADLENLLNEA 232 (254)
T ss_dssp EEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTS--CBCTTCCHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred EEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCC--CCCcccCHHHHHHHcCCCCHHHHHHHHHHH
Confidence 889999999999999999999999999999999999999999877543 333 33478899999999999999999999
Q ss_pred HHHHhhccccCCcccccccccccccccccccc
Q 002386 789 VHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAM 820 (929)
Q Consensus 789 ~~~a~~r~~~~~~~~~~~~~~~lt~edf~~al 820 (929)
...+..+ +...++.+||.+++
T Consensus 233 ~~~a~~~-----------~~~~I~~~dl~~a~ 253 (254)
T 1ixz_A 233 ALLAARE-----------GRRKITMKDLEEAA 253 (254)
T ss_dssp HHHHHHT-----------TCSSBCHHHHHHHT
T ss_pred HHHHHHh-----------cCCCcCHHHHHHHh
Confidence 9888754 22468888887765
No 28
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.90 E-value=6.2e-26 Score=245.07 Aligned_cols=252 Identities=22% Similarity=0.276 Sum_probs=185.6
Q ss_pred ccccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEecc
Q 002386 551 SNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCS 630 (929)
Q Consensus 551 ~~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s 630 (929)
..+++++|.+..++.+.+.+..+. .++.+..++...+.++||+||||||||++|+++|++++ .+++.++|.
T Consensus 8 ~~~~~i~G~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~------~~~~~v~~~ 78 (268)
T 2r62_A 8 VRFKDMAGNEEAKEEVVEIVDFLK---YPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAH------VPFFSMGGS 78 (268)
T ss_dssp CCSTTSSSCTTTHHHHHHHHHHHH---CHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHT------CCCCCCCSC
T ss_pred CCHHHhCCcHHHHHHHHHHHHHHH---ChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhC------CCEEEechH
Confidence 346789999999998887655432 45677888888889999999999999999999999987 667788888
Q ss_pred ccccCchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCCCcE
Q 002386 631 RLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPI 710 (929)
Q Consensus 631 ~L~~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V 710 (929)
.+.....+.....+..+|..+....|++|||||+|.+.+.+..................|+..+++.... ..++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~------~~~v 152 (268)
T 2r62_A 79 SFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSE------NAPV 152 (268)
T ss_dssp TTTTSCSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCS------CSCC
T ss_pred HHHHhhcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccC------CCCE
Confidence 8776555544445667788888889999999999999753211100000000011223343444433221 1248
Q ss_pred EEEEecCCCCccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhhcccccCHHHHHHHHhhcCCCChhhHHHHHHHHHH
Q 002386 711 AFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVH 790 (929)
Q Consensus 711 ivIattn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~d~~l~~LA~~teG~s~~DL~~Lv~~A~~ 790 (929)
++|+|+|.++.+++++.+++||+..+++++|+.++|.+|++.++....+. ++..+..++..++||+++||..++++|..
T Consensus 153 ~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~~g~dl~~l~~~a~~ 231 (268)
T 2r62_A 153 IVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLA-NDVNLQEVAKLTAGLAGADLANIINEAAL 231 (268)
T ss_dssp EEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCC-SSCCTTTTTSSSCSSCHHHHHHHHHHHHH
T ss_pred EEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCC-CccCHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999888654332 33346778999999999999999999987
Q ss_pred HHhhccccCCccccccccccccccccccccccccccccc
Q 002386 791 AAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLPVAMR 829 (929)
Q Consensus 791 ~a~~r~~~~~~~~~~~~~~~lt~edf~~al~~~~P~slr 829 (929)
.+..+ +...++.+|+..++....|...+
T Consensus 232 ~a~~~-----------~~~~i~~~~~~~a~~~~~~~~~~ 259 (268)
T 2r62_A 232 LAGRN-----------NQKEVRQQHLKEAVERGIAGLEK 259 (268)
T ss_dssp TTSSS-----------CCCSCCHHHHHTSCTTCCCCCC-
T ss_pred HHHHh-----------ccCCcCHHHHHHHHHHHhhcchh
Confidence 66543 23568999999999988776543
No 29
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.90 E-value=8.5e-23 Score=222.09 Aligned_cols=241 Identities=21% Similarity=0.295 Sum_probs=183.5
Q ss_pred cccccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEec
Q 002386 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (929)
Q Consensus 550 ~~~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~ 629 (929)
..++++++|.+..++++.+....+. .+..+...++..+.+++|+|||||||||+++++|..+. ..++.+++
T Consensus 36 ~~~~~~i~g~~~~~~~l~~l~~~~~---~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~------~~~i~~~~ 106 (278)
T 1iy2_A 36 KVTFKDVAGAEEAKEELKEIVEFLK---NPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR------VPFITASG 106 (278)
T ss_dssp CCCGGGSSSCHHHHHHHHHHHHHHH---CHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTT------CCEEEEEH
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHH---CHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcC------CCEEEecH
Confidence 4567889999988888876544332 34567777788888899999999999999999999886 67888998
Q ss_pred cccccCchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCCCc
Q 002386 630 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (929)
Q Consensus 630 s~L~~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (929)
.++.....+...+.+..+|+.+....|+++|+||+|.+...+....+ ............+...+++.... ..
T Consensus 107 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~-~~~~~~~~~~~~ll~~lsgg~~~-------~~ 178 (278)
T 1iy2_A 107 SDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVG-GGNDEREQTLNQLLVEMDGFEKD-------TA 178 (278)
T ss_dssp HHHHHSTTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC---------CHHHHHHHHHHHHHHTTCCTT-------CC
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccC-CcchHHHHHHHHHHHHHhCCCCC-------CC
Confidence 88776666677777889999998788999999999998743221111 11122234444555555543321 14
Q ss_pred EEEEEecCCCCccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhhcccccCH-HHHHHHHhhcCCCChhhHHHHHHHH
Q 002386 710 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSD-EILLDVASKCDGYDAYDLEILVDRT 788 (929)
Q Consensus 710 VivIattn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~d-~~l~~LA~~teG~s~~DL~~Lv~~A 788 (929)
++++++++.++.+|+++.+++||+..++++.|+.++|.+||+.+++.. .+.+ ..+..++..++||+++||+.++++|
T Consensus 179 ~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~--~~~~~~~~~~la~~~~G~~~~dl~~l~~~a 256 (278)
T 1iy2_A 179 IVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGK--PLAEDVDLALLAKRTPGFVGADLENLLNEA 256 (278)
T ss_dssp EEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTS--CBCTTCCHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred EEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccC--CCCcccCHHHHHHHcCCCCHHHHHHHHHHH
Confidence 889999999999999999999999999999999999999999887643 3333 3478899999999999999999999
Q ss_pred HHHHhhccccCCcccccccccccccccccccc
Q 002386 789 VHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAM 820 (929)
Q Consensus 789 ~~~a~~r~~~~~~~~~~~~~~~lt~edf~~al 820 (929)
...+..+ +...++.+||.+++
T Consensus 257 ~~~a~~~-----------~~~~I~~~dl~~a~ 277 (278)
T 1iy2_A 257 ALLAARE-----------GRRKITMKDLEEAA 277 (278)
T ss_dssp HHHHHHT-----------TCCSBCHHHHHHHT
T ss_pred HHHHHHh-----------CCCCcCHHHHHHHh
Confidence 8877654 22468888887765
No 30
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.89 E-value=6.4e-23 Score=253.39 Aligned_cols=315 Identities=17% Similarity=0.214 Sum_probs=196.7
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCc----cceeeEEEE
Q 002386 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHK----DLVAHIVFV 627 (929)
Q Consensus 552 ~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~----~~~~~~~~V 627 (929)
+++.+.|.+..++.+.+.+.. ....++||+||||||||++|+++|+.+.... .....++.+
T Consensus 178 ~ld~iiG~~~~i~~l~~~l~~---------------~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~ 242 (758)
T 3pxi_A 178 SLDPVIGRSKEIQRVIEVLSR---------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTL 242 (758)
T ss_dssp CSCCCCCCHHHHHHHHHHHHC---------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC
T ss_pred CCCCccCchHHHHHHHHHHhC---------------CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEe
Confidence 456788999988888774421 2346799999999999999999999984321 012456666
Q ss_pred eccccccCchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCC
Q 002386 628 CCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGI 707 (929)
Q Consensus 628 ~~s~L~~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~ 707 (929)
++ ...+.|+.+..+..+|..+....|.||||| .. . ...+.|...++ .
T Consensus 243 ~~---g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD-----~~--~------------~~~~~L~~~l~-----------~ 289 (758)
T 3pxi_A 243 DM---GTKYRGEFEDRLKKVMDEIRQAGNIILFID-----AA--I------------DASNILKPSLA-----------R 289 (758)
T ss_dssp -------------CTTHHHHHHHHHTCCCCEEEEC-----C----------------------CCCTT-----------S
T ss_pred cc---cccccchHHHHHHHHHHHHHhcCCEEEEEc-----Cc--h------------hHHHHHHHHHh-----------c
Confidence 66 334456667778889999988899999999 10 0 11222322222 1
Q ss_pred CcEEEEEecCCCC-----ccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhh----cccccCHHHHHHHHhhc-----
Q 002386 708 GPIAFVASAQSLE-----KIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQR----RSLECSDEILLDVASKC----- 773 (929)
Q Consensus 708 ~~VivIattn~~~-----~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~----~~~~~~d~~l~~LA~~t----- 773 (929)
+.+.+|++||..+ .+++++++ ||. .|.|+.|+.+++.+||+.++.. .+..++++.+..++..+
T Consensus 290 ~~v~~I~at~~~~~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i~ 366 (758)
T 3pxi_A 290 GELQCIGATTLDEYRKYIEKDAALER--RFQ-PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYIS 366 (758)
T ss_dssp SSCEEEEECCTTTTHHHHTTCSHHHH--SEE-EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSC
T ss_pred CCEEEEeCCChHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcccc
Confidence 2488999999887 68999999 995 6999999999999999987665 45668888888777765
Q ss_pred CCCChhhHHHHHHHHHHHHhhccccCCcc--------------------------------------------------c
Q 002386 774 DGYDAYDLEILVDRTVHAAVGRYLHSDSS--------------------------------------------------F 803 (929)
Q Consensus 774 eG~s~~DL~~Lv~~A~~~a~~r~~~~~~~--------------------------------------------------~ 803 (929)
+++.+.+...+++.|...+..+....... .
T Consensus 367 ~~~~p~~ai~ll~~a~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~ 446 (758)
T 3pxi_A 367 DRFLPDKAIDLIDEAGSKVRLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKSWKEK 446 (758)
T ss_dssp CSCTTHHHHHHHHHHHHHHHHHTTC--CCTHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHSGGGHH
T ss_pred cCcCCcHHHHHHHHHHHHHHhhccCCCcchhhHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566677777777754433221000000 0
Q ss_pred cccccccccccccccccccccccccccccccccC----CCCCccCCCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCc
Q 002386 804 EKHIKPTLVRDDFSQAMHEFLPVAMRDITKTSAE----GGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRS 879 (929)
Q Consensus 804 ~~~~~~~lt~edf~~al~~~~P~slr~v~l~~~~----~~~~~w~dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~s 879 (929)
.......++.+++...+..++............. ....-..++.|.+.+++.+.+.+..... ....|-++..
T Consensus 447 ~~~~~~~v~~~~i~~~v~~~~~ip~~~~~~~~~~~l~~l~~~l~~~viGq~~a~~~l~~~i~~~~~----~~~~~~~p~~ 522 (758)
T 3pxi_A 447 QGQENSEVTVDDIAMVVSSWTGVPVSKIAQTETDKLLNMENILHSRVIGQDEAVVAVAKAVRRARA----GLKDPKRPIG 522 (758)
T ss_dssp HHCC---CCTHHHHHHHHTTC-------CHHHHSCC-CHHHHHHTTSCSCHHHHHHHHHHHHHHTT----TCSCTTSCSE
T ss_pred hcccCcccCHHHHHHHHHHHhCCChHHhhHHHHHHHHHHHHHHhCcCcChHHHHHHHHHHHHHHHc----ccCCCCCCce
Confidence 0001123444444444443332111110000000 0001134688999999888888764211 1112334445
Q ss_pred eeEEecCCCCcHHHHHHHHHHHc---CCceEEEecccccccccCh
Q 002386 880 NVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKYIGA 921 (929)
Q Consensus 880 GiLLyGpPGtGKT~LA~alA~e~---glnfIsVkg~ELl~kyIG~ 921 (929)
++||+||||||||++|+++|+.+ +.+|+.++++++..++.+.
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~~ 567 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHSTS 567 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccccccc
Confidence 79999999999999999999997 7899999999999988653
No 31
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.89 E-value=5e-25 Score=272.37 Aligned_cols=260 Identities=21% Similarity=0.301 Sum_probs=198.0
Q ss_pred cccccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEec
Q 002386 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (929)
Q Consensus 550 ~~~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~ 629 (929)
...+.+++|++..++.+.+.+ ..+..++..+..+++.++.++||+||||||||++|+++|..++ ..++.+++
T Consensus 473 ~v~~~di~gl~~vk~~l~~~v--~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~------~~~i~v~~ 544 (806)
T 1ypw_A 473 QVTWEDIGGLEDVKRELQELV--QYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ------ANFISIKG 544 (806)
T ss_dssp CCSSCSSSCCCCHHHHHHTTT--TSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT------CCCCCCCC
T ss_pred cccccccccchhhhhhHHHHH--HhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhC------CCEEEEec
Confidence 345678889999988887743 3445567778888899999999999999999999999999997 67888999
Q ss_pred cccccCchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCCCc
Q 002386 630 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (929)
Q Consensus 630 s~L~~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (929)
+++.+.+.++..+.+..+|+.+....|+||||||+|.+++.+....+ .......++.+.|+..|+++... .+
T Consensus 545 ~~l~~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~-~~~~~~~~v~~~LL~~ld~~~~~-------~~ 616 (806)
T 1ypw_A 545 PELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIG-DGGGAADRVINQILTEMDGMSTK-------KN 616 (806)
T ss_dssp SSSTTCCTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCS-HHHHHHHHHHHHHHTTCC-------------C
T ss_pred hHhhhhhcCccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCC-CcchhHHHHHHHHHHHHhccccc-------CC
Confidence 99999999998899999999999999999999999999864332211 11224456777777777765433 25
Q ss_pred EEEEEecCCCCccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhhcccccCHHHHHHHHhhcCCCChhhHHHHHHHHH
Q 002386 710 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTV 789 (929)
Q Consensus 710 VivIattn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~d~~l~~LA~~teG~s~~DL~~Lv~~A~ 789 (929)
++||+|||+++.+|++++++|||+..++++.|+.++|.+||+.++++..+. .+..+..++..++||+++||..+|+.|.
T Consensus 617 v~vI~tTN~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~-~~~~l~~la~~t~g~sgadi~~l~~~a~ 695 (806)
T 1ypw_A 617 VFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVA-KDVDLEFLAKMTNGFSGADLTEICQRAC 695 (806)
T ss_dssp CBCCCCCBSCGGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC-----CCCCSCSCGGGSSSCCHHHHHHHHHHH
T ss_pred eEEEEecCCcccCCHHHhCccccCceeecCCCCHHHHHHHHHHHhccCCCC-cccCHHHHHHhccccCHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999888654332 2334677899999999999999999999
Q ss_pred HHHhhccccCCcc--------------cccccccccccccccccccccccc
Q 002386 790 HAAVGRYLHSDSS--------------FEKHIKPTLVRDDFSQAMHEFLPV 826 (929)
Q Consensus 790 ~~a~~r~~~~~~~--------------~~~~~~~~lt~edf~~al~~~~P~ 826 (929)
..++++....... ........++.+||.++++...|+
T Consensus 696 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~~~s 746 (806)
T 1ypw_A 696 KLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRS 746 (806)
T ss_dssp HHHHSCC------------------------CCTTTTTTSSCCCCCC----
T ss_pred HHHHHHHHHHHHhhhhhhcccccccccccccccCccCHHHHHHHHHhCCCC
Confidence 9998875421100 001112468899999988776653
No 32
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.88 E-value=1.6e-22 Score=252.68 Aligned_cols=204 Identities=18% Similarity=0.249 Sum_probs=131.4
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCcc----ceeeEEEE
Q 002386 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKD----LVAHIVFV 627 (929)
Q Consensus 552 ~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~----~~~~~~~V 627 (929)
+++.+.|.+..++.+.+.+. ...+.++||+||||||||++|+++|+.+..... ....++++
T Consensus 168 ~ld~viGr~~~i~~l~~~l~---------------~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l 232 (854)
T 1qvr_A 168 KLDPVIGRDEEIRRVIQILL---------------RRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSL 232 (854)
T ss_dssp CSCCCCSCHHHHHHHHHHHH---------------CSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEE
T ss_pred CCcccCCcHHHHHHHHHHHh---------------cCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEe
Confidence 45677888888777776431 122357999999999999999999999843210 12678899
Q ss_pred eccccc--cCchhhHHHHHHHHHHHHHhc-CCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCc
Q 002386 628 CCSRLS--LEKGPIIRQALSNFISEALDH-APSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSS 704 (929)
Q Consensus 628 ~~s~L~--~~~~~~~~~~l~~~f~~a~~~-~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~ 704 (929)
+|+.+. ..+.++....+..+|..+... .|.||||||+|.+.+.... ++ .....+.|...++.
T Consensus 233 ~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~-~g------~~~~~~~L~~~l~~-------- 297 (854)
T 1qvr_A 233 QMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKA-EG------AVDAGNMLKPALAR-------- 297 (854)
T ss_dssp CC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC--------------------------HHHHHT--------
T ss_pred ehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCc-cc------hHHHHHHHHHHHhC--------
Confidence 998886 455677788889999988764 6889999999999753221 11 11334445555532
Q ss_pred cCCCcEEEEEecCCCC----ccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhh----cccccCHHHHHHHHhhcC--
Q 002386 705 CGIGPIAFVASAQSLE----KIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQR----RSLECSDEILLDVASKCD-- 774 (929)
Q Consensus 705 ~~~~~VivIattn~~~----~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~----~~~~~~d~~l~~LA~~te-- 774 (929)
+.+.+|++++..+ .++++|.+ ||+ .+.+++|+.+++.+||+.++.. .+..++++.+..++..+.
T Consensus 298 ---~~i~~I~at~~~~~~~~~~d~aL~r--Rf~-~i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r~ 371 (854)
T 1qvr_A 298 ---GELRLIGATTLDEYREIEKDPALER--RFQ-PVYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRY 371 (854)
T ss_dssp ---TCCCEEEEECHHHHHHHTTCTTTCS--CCC-CEEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHH
T ss_pred ---CCeEEEEecCchHHhhhccCHHHHh--CCc-eEEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHhhh
Confidence 1367888887654 46899999 998 4999999999999999877653 356788888888777654
Q ss_pred ---CCChhhHHHHHHHHHHH
Q 002386 775 ---GYDAYDLEILVDRTVHA 791 (929)
Q Consensus 775 ---G~s~~DL~~Lv~~A~~~ 791 (929)
+|.+.....++++|...
T Consensus 372 i~~~~lp~kai~lldea~a~ 391 (854)
T 1qvr_A 372 ITERRLPDKAIDLIDEAAAR 391 (854)
T ss_dssp CCSSCTHHHHHHHHHHHHHH
T ss_pred cccccChHHHHHHHHHHHHH
Confidence 45565666666666543
No 33
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.86 E-value=1.2e-22 Score=228.30 Aligned_cols=90 Identities=46% Similarity=0.743 Sum_probs=88.1
Q ss_pred CCCccCCCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHcCCceEEEecccccccc
Q 002386 839 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKY 918 (929)
Q Consensus 839 ~~~~w~dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~glnfIsVkg~ELl~ky 918 (929)
|.+.|+|||||+++|+.|++.++||++||++|.+.++++++|+|||||||||||++|+|+|+++|.+|+.|+++++++||
T Consensus 143 p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk~ 222 (405)
T 4b4t_J 143 PDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKY 222 (405)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCSS
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhccc
Confidence 35999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cChhhHHHhh
Q 002386 919 IGASEQAVRR 928 (929)
Q Consensus 919 IG~SEq~VRd 928 (929)
+|+||++||+
T Consensus 223 vGese~~vr~ 232 (405)
T 4b4t_J 223 IGEGSRMVRE 232 (405)
T ss_dssp TTHHHHHHHH
T ss_pred cchHHHHHHH
Confidence 9999999986
No 34
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.84 E-value=4.9e-21 Score=209.91 Aligned_cols=184 Identities=13% Similarity=0.183 Sum_probs=133.5
Q ss_pred cCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccccccCchhhHHHHHHHHHHHH----HhcCCcEEE
Q 002386 585 YHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEA----LDHAPSIVI 660 (929)
Q Consensus 585 ~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~~~~~~~~~~~l~~~f~~a----~~~~PsVL~ 660 (929)
.+.++|.++|||||||||||++|+++|++++ .++++++|+++...+.+.....+...|..| ....|+|||
T Consensus 31 ~~~~~p~~lLl~GppGtGKT~la~aiA~~l~------~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~ 104 (293)
T 3t15_A 31 PNIKVPLILGIWGGKGQGKSFQCELVFRKMG------INPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLF 104 (293)
T ss_dssp TTCCCCSEEEEEECTTSCHHHHHHHHHHHHT------CCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEE
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHhC------CCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEE
Confidence 3567788999999999999999999999997 889999999999999999999999999888 577899999
Q ss_pred EccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccc----cCccCCCcEEEEEecCCCCccccccccCCCcceEe
Q 002386 661 FDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKR----KSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHV 736 (929)
Q Consensus 661 LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~----~~~~~~~~VivIattn~~~~L~~~L~~~~Rf~~~i 736 (929)
|||+|.+++.... ........+.+...|+..+|+..... .......++++|+|||.++.+|++++|++||+..+
T Consensus 105 iDEiD~~~~~~~~--~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i 182 (293)
T 3t15_A 105 INDLDAGAGRMGG--TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFY 182 (293)
T ss_dssp EECCC----------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEE
T ss_pred EechhhhcCCCCC--CccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeE
Confidence 9999999852211 11112233466788888887432100 00112236999999999999999999999999888
Q ss_pred eCCCCcHHHHHHHHHHHHhhcccccCHHHHHHHHhhcCCCChhhHHH
Q 002386 737 QLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEI 783 (929)
Q Consensus 737 ~l~~Pd~~eR~~IL~~~l~~~~~~~~d~~l~~LA~~teG~s~~DL~~ 783 (929)
.+ |+.++|.+|++.++....+. ...++..++||+++||..
T Consensus 183 ~~--P~~~~r~~Il~~~~~~~~~~-----~~~l~~~~~~~~~~~l~~ 222 (293)
T 3t15_A 183 WA--PTREDRIGVCTGIFRTDNVP-----AEDVVKIVDNFPGQSIDF 222 (293)
T ss_dssp EC--CCHHHHHHHHHHHHGGGCCC-----HHHHHHHHHHSCSCCHHH
T ss_pred eC--cCHHHHHHHHHHhccCCCCC-----HHHHHHHhCCCCcccHHH
Confidence 74 69999999999888754433 467788888999998864
No 35
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.83 E-value=1.9e-21 Score=219.15 Aligned_cols=90 Identities=34% Similarity=0.671 Sum_probs=88.1
Q ss_pred CCCccCCCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHcCCceEEEecccccccc
Q 002386 839 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKY 918 (929)
Q Consensus 839 ~~~~w~dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~glnfIsVkg~ELl~ky 918 (929)
+.+.|+|||||+++|+.|++.++||++||+.|.+.++++++|+|||||||||||++|+|+|++++.+|+.|++++|++||
T Consensus 177 p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~sk~ 256 (437)
T 4b4t_I 177 PTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKY 256 (437)
T ss_dssp CCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCCSS
T ss_pred CCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhhcc
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cChhhHHHhh
Q 002386 919 IGASEQAVRR 928 (929)
Q Consensus 919 IG~SEq~VRd 928 (929)
+|+||+++|+
T Consensus 257 vGesek~ir~ 266 (437)
T 4b4t_I 257 LGDGPRLCRQ 266 (437)
T ss_dssp SSHHHHHHHH
T ss_pred CchHHHHHHH
Confidence 9999999985
No 36
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.83 E-value=2.8e-21 Score=219.79 Aligned_cols=90 Identities=39% Similarity=0.644 Sum_probs=88.1
Q ss_pred CCCccCCCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHcCCceEEEecccccccc
Q 002386 839 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKY 918 (929)
Q Consensus 839 ~~~~w~dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~glnfIsVkg~ELl~ky 918 (929)
+.+.|+|||||+++|+.|+|.++||+++|++|.+.++++++|+|||||||||||++|+|+|+++|.+|+.|++++|++||
T Consensus 204 P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~sk~ 283 (467)
T 4b4t_H 204 PDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKY 283 (467)
T ss_dssp CSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCCCS
T ss_pred CCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhccc
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cChhhHHHhh
Q 002386 919 IGASEQAVRR 928 (929)
Q Consensus 919 IG~SEq~VRd 928 (929)
+|+||+++|+
T Consensus 284 vGesek~ir~ 293 (467)
T 4b4t_H 284 VGEGARMVRE 293 (467)
T ss_dssp SSHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 9999999985
No 37
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.82 E-value=5.5e-21 Score=218.26 Aligned_cols=90 Identities=41% Similarity=0.727 Sum_probs=87.9
Q ss_pred CCCccCCCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHcCCceEEEecccccccc
Q 002386 839 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKY 918 (929)
Q Consensus 839 ~~~~w~dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~glnfIsVkg~ELl~ky 918 (929)
+.+.|+|||||+++|+.|++.++||++||++|.+.++++++|+|||||||||||++|+|+|+++|.+|+.|+++++++||
T Consensus 176 p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~sk~ 255 (437)
T 4b4t_L 176 GEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKY 255 (437)
T ss_dssp CSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCCSS
T ss_pred CCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhcccc
Confidence 35999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cChhhHHHhh
Q 002386 919 IGASEQAVRR 928 (929)
Q Consensus 919 IG~SEq~VRd 928 (929)
+|+||+++|+
T Consensus 256 ~Gese~~ir~ 265 (437)
T 4b4t_L 256 IGESARIIRE 265 (437)
T ss_dssp SSHHHHHHHH
T ss_pred chHHHHHHHH
Confidence 9999999985
No 38
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.82 E-value=6.6e-21 Score=217.40 Aligned_cols=90 Identities=36% Similarity=0.619 Sum_probs=88.0
Q ss_pred CCCccCCCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHcCCceEEEecccccccc
Q 002386 839 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKY 918 (929)
Q Consensus 839 ~~~~w~dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~glnfIsVkg~ELl~ky 918 (929)
+.+.|+||||++++|+.|++.++||+++|++|.+.++++++|+|||||||||||++|+|+|+++|.+|+.|++++|++||
T Consensus 176 p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~~~ 255 (434)
T 4b4t_M 176 PTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMY 255 (434)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCSSC
T ss_pred CCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhhcc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cChhhHHHhh
Q 002386 919 IGASEQAVRR 928 (929)
Q Consensus 919 IG~SEq~VRd 928 (929)
+|+||+++|+
T Consensus 256 vGese~~ir~ 265 (434)
T 4b4t_M 256 IGEGAKLVRD 265 (434)
T ss_dssp SSHHHHHHHH
T ss_pred cchHHHHHHH
Confidence 9999999985
No 39
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.81 E-value=1e-20 Score=215.80 Aligned_cols=90 Identities=39% Similarity=0.668 Sum_probs=88.1
Q ss_pred CCCccCCCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHcCCceEEEecccccccc
Q 002386 839 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKY 918 (929)
Q Consensus 839 ~~~~w~dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~glnfIsVkg~ELl~ky 918 (929)
+.+.|+|||||+++|+.|++.++||+++|+.|.+.|+++++|+|||||||||||++|+|+|+++|.+|+.|++++++++|
T Consensus 167 p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~~~ 246 (428)
T 4b4t_K 167 PDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKY 246 (428)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCCSS
T ss_pred CCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhccc
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cChhhHHHhh
Q 002386 919 IGASEQAVRR 928 (929)
Q Consensus 919 IG~SEq~VRd 928 (929)
+|+||++||+
T Consensus 247 ~Ge~e~~ir~ 256 (428)
T 4b4t_K 247 LGEGPRMVRD 256 (428)
T ss_dssp CSHHHHHHHH
T ss_pred cchhHHHHHH
Confidence 9999999986
No 40
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.81 E-value=1.9e-19 Score=198.05 Aligned_cols=220 Identities=15% Similarity=0.170 Sum_probs=166.1
Q ss_pred ccccchhHHHHHHHHHHHhcCCCchhhhhhcCC---CCCceEEEECCCCcHHHHHHHHHHHHhccCccc-eeeEEEEecc
Q 002386 555 SLSWMGTTASDVINRIKVLLSPDSGLWFSTYHL---PLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL-VAHIVFVCCS 630 (929)
Q Consensus 555 ~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~---~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~-~~~~~~V~~s 630 (929)
+++|++..++.+.+.+..... +..+..+|+ .++.++||+||||||||++|+++|+.+...... ..++++++|+
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~---~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~ 108 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLV---ERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD 108 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHH---HHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG
T ss_pred HccChHHHHHHHHHHHHHHHh---HHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH
Confidence 578899999988887654322 223333333 334579999999999999999999998643221 2478999999
Q ss_pred ccccCchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCCCcE
Q 002386 631 RLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPI 710 (929)
Q Consensus 631 ~L~~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V 710 (929)
.+.+...+.....+..+|..+ .+++|||||+|.+++.+.+ .. ........|...++.... ++
T Consensus 109 ~l~~~~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~--~~----~~~~~~~~Ll~~l~~~~~---------~~ 170 (309)
T 3syl_A 109 DLVGQYIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNE--RD----YGQEAIEILLQVMENNRD---------DL 170 (309)
T ss_dssp GTCCSSTTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC-----C----CTHHHHHHHHHHHHHCTT---------TC
T ss_pred HhhhhcccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCc--cc----ccHHHHHHHHHHHhcCCC---------CE
Confidence 999888888888888888876 4679999999999753221 11 113566777777776431 47
Q ss_pred EEEEecCCCC-----ccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhhcccccCHHHHHHHHhh-------cCCCCh
Q 002386 711 AFVASAQSLE-----KIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASK-------CDGYDA 778 (929)
Q Consensus 711 ivIattn~~~-----~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~d~~l~~LA~~-------teG~s~ 778 (929)
.+|++++... .++++|++ ||+..++|++|+.+++.+|++.++...+..++++.+..++.. ....++
T Consensus 171 ~~i~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~gn~ 248 (309)
T 3syl_A 171 VVILAGYADRMENFFQSNPGFRS--RIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRAYIGLRRNQPHFANA 248 (309)
T ss_dssp EEEEEECHHHHHHHHHHSTTHHH--HEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHTTSSSCCHH
T ss_pred EEEEeCChHHHHHHHhhCHHHHH--hCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccCCCCCcH
Confidence 8888887543 35789999 999999999999999999999999988888999988888776 333458
Q ss_pred hhHHHHHHHHHHHHhhccc
Q 002386 779 YDLEILVDRTVHAAVGRYL 797 (929)
Q Consensus 779 ~DL~~Lv~~A~~~a~~r~~ 797 (929)
+++..++++|+..+..|..
T Consensus 249 r~l~~~l~~a~~~~~~r~~ 267 (309)
T 3syl_A 249 RSIRNALDRARLRQANRLF 267 (309)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999987777654
No 41
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.73 E-value=5.4e-17 Score=182.92 Aligned_cols=221 Identities=17% Similarity=0.185 Sum_probs=155.3
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccc
Q 002386 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSR 631 (929)
Q Consensus 552 ~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~ 631 (929)
.++++.|.+..++.+......+.. +..++.++||+||||||||++|+++|+.+... .+++.++|..
T Consensus 42 ~~~~ivG~~~~~~~l~~l~~~~~~----------~~~~~~~vLl~GppGtGKT~la~~la~~l~~~----~~~~~~~~~~ 107 (368)
T 3uk6_A 42 ASQGMVGQLAARRAAGVVLEMIRE----------GKIAGRAVLIAGQPGTGKTAIAMGMAQALGPD----TPFTAIAGSE 107 (368)
T ss_dssp EETTEESCHHHHHHHHHHHHHHHT----------TCCTTCEEEEEESTTSSHHHHHHHHHHHHCSS----CCEEEEEGGG
T ss_pred chhhccChHHHHHHHHHHHHHHHc----------CCCCCCEEEEECCCCCCHHHHHHHHHHHhccc----CCcccccchh
Confidence 367888888877765443332222 23345789999999999999999999998632 3566666654
Q ss_pred cccCc-------------------------------------------------hhhHHHHHHHHHHHHHh-----c---
Q 002386 632 LSLEK-------------------------------------------------GPIIRQALSNFISEALD-----H--- 654 (929)
Q Consensus 632 L~~~~-------------------------------------------------~~~~~~~l~~~f~~a~~-----~--- 654 (929)
+.... .+.....++..+..+.. .
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~ 187 (368)
T 3uk6_A 108 IFSLEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAE 187 (368)
T ss_dssp GSCSSSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC--
T ss_pred hhhcccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhcccc
Confidence 22211 11112223333333321 1
Q ss_pred -CCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCCCcEEEEEec-----------CCCCcc
Q 002386 655 -APSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASA-----------QSLEKI 722 (929)
Q Consensus 655 -~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~VivIatt-----------n~~~~L 722 (929)
.|+||||||+|.+.. ...+.|...++.... +++++++. +.+..+
T Consensus 188 ~~~~vl~IDEi~~l~~---------------~~~~~L~~~le~~~~---------~~~ii~t~~~~~~i~~t~~~~~~~l 243 (368)
T 3uk6_A 188 IIPGVLFIDEVHMLDI---------------ESFSFLNRALESDMA---------PVLIMATNRGITRIRGTSYQSPHGI 243 (368)
T ss_dssp -CBCEEEEESGGGSBH---------------HHHHHHHHHTTCTTC---------CEEEEEESCSEEECBTSSCEEETTC
T ss_pred ccCceEEEhhccccCh---------------HHHHHHHHHhhCcCC---------CeeeeecccceeeeeccCCCCcccC
Confidence 268999999999852 445556665543221 35555554 346678
Q ss_pred ccccccCCCcceEeeCCCCcHHHHHHHHHHHHhhcccccCHHHHHHHHhhcCCCChhhHHHHHHHHHHHHhhccccCCcc
Q 002386 723 PQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAAVGRYLHSDSS 802 (929)
Q Consensus 723 ~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~d~~l~~LA~~teG~s~~DL~~Lv~~A~~~a~~r~~~~~~~ 802 (929)
+++|++ ||.. ++|++|+.+++.+|++..+...+..++++.+..++..+.+.+++++..++++|...|..+
T Consensus 244 ~~~l~s--R~~~-i~~~~~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~------- 313 (368)
T 3uk6_A 244 PIDLLD--RLLI-VSTTPYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKR------- 313 (368)
T ss_dssp CHHHHT--TEEE-EEECCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHT-------
T ss_pred CHHHHh--hccE-EEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh-------
Confidence 899999 9985 899999999999999999988888899999999999999679999999999998877654
Q ss_pred cccccccccccccccccccccc
Q 002386 803 FEKHIKPTLVRDDFSQAMHEFL 824 (929)
Q Consensus 803 ~~~~~~~~lt~edf~~al~~~~ 824 (929)
+...++.+++.+++..+.
T Consensus 314 ----~~~~It~~~v~~a~~~~~ 331 (368)
T 3uk6_A 314 ----KGTEVQVDDIKRVYSLFL 331 (368)
T ss_dssp ----TCSSBCHHHHHHHHHHSB
T ss_pred ----CCCCCCHHHHHHHHHHhc
Confidence 335688999988887654
No 42
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.71 E-value=1.5e-18 Score=223.85 Aligned_cols=90 Identities=18% Similarity=0.169 Sum_probs=68.9
Q ss_pred CCCccCCCCCchhhHHHHHHHHhcCCCc----------hhhhhh------CCCC----------CCce--eEEecCCCCc
Q 002386 839 GRSGWDDVGGLTDIQNAIKEMIELPSKF----------PNIFAQ------APLR----------LRSN--VLLYGPPGCG 890 (929)
Q Consensus 839 ~~~~w~dIgGL~~vk~~L~e~le~p~k~----------~~if~~------~~lr----------~~sG--iLLyGpPGtG 890 (929)
..+.|+++||++++|+.+.+.++||++| ++.|.. .+++ +|+| +|+|||||||
T Consensus 1015 ~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g~G 1094 (1706)
T 3cmw_A 1015 SGSSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSG 1094 (1706)
T ss_dssp ---------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSS
T ss_pred CCceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCCCC
Confidence 3489999999999999999999999855 667766 4444 4556 9999999999
Q ss_pred HHHHHHHHHHHcCCc-----eEEEec--cccc--------ccccCh----hhHHHhh
Q 002386 891 KTHIVGAAAAACSLR-----FISVKG--PELL--------NKYIGA----SEQAVRR 928 (929)
Q Consensus 891 KT~LA~alA~e~gln-----fIsVkg--~ELl--------~kyIG~----SEq~VRd 928 (929)
||+||.++|.++..| ||++++ ++++ ++|+|+ |||+||.
T Consensus 1095 KT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~ 1151 (1706)
T 3cmw_A 1095 KTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEI 1151 (1706)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHH
T ss_pred hHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHH
Confidence 999999999999777 888877 6777 899999 9999974
No 43
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.70 E-value=1.1e-18 Score=202.90 Aligned_cols=206 Identities=16% Similarity=0.160 Sum_probs=132.6
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccc
Q 002386 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSR 631 (929)
Q Consensus 552 ~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~ 631 (929)
.+++++|++..++.+.+.+..+. .+..+++++||+||||||||++|+++|++++.. .+++.++|+.
T Consensus 35 ~~~~iiG~~~~~~~l~~~~~~~~----------~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~----~~~~~~~~~~ 100 (456)
T 2c9o_A 35 AASGLVGQENAREACGVIVELIK----------SKKMAGRAVLLAGPPGTGKTALALAIAQELGSK----VPFCPMVGSE 100 (456)
T ss_dssp EETTEESCHHHHHHHHHHHHHHH----------TTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTT----SCEEEEEGGG
T ss_pred chhhccCHHHHHHHHHHHHHHHH----------hCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCC----ceEEEEeHHH
Confidence 45788999998888776553332 234566889999999999999999999998643 6789999999
Q ss_pred cccCchhhHHHHHHHHHHHH---HhcCCcEEEEccccccccCCCCCCCCCCchhHH---------------HHHHHHHHH
Q 002386 632 LSLEKGPIIRQALSNFISEA---LDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVI---------------ALTKFLVDI 693 (929)
Q Consensus 632 L~~~~~~~~~~~l~~~f~~a---~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~---------------~l~~~L~~~ 693 (929)
+.+.+.++.+. +...|..| ....|++|||||+|.+++.+............. .+...+.+.
T Consensus 101 ~~~~~~~~~~~-~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~ 179 (456)
T 2c9o_A 101 VYSTEIKKTEV-LMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFES 179 (456)
T ss_dssp GCCSSSCHHHH-HHHHHHHTEEEEEEEEEEEEEEEEEEEEEC--------------CEEEEEEETTEEEEEEECHHHHHH
T ss_pred HHHHhhhhhHH-HHHHHHHHHhhhhcCCcEEEEechhhcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHH
Confidence 99999999887 89999999 778999999999999997554332111100000 111223333
Q ss_pred HHHhcccccCccCCCcEEEEEecCCCCccccccccCCCcce--EeeCCCC--cHHHHHHHHHHHHhhcccccCHHHHHHH
Q 002386 694 MDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDF--HVQLPAP--AASERKAILEHEIQRRSLECSDEILLDV 769 (929)
Q Consensus 694 ld~~~~~~~~~~~~~~VivIattn~~~~L~~~L~~~~Rf~~--~i~l~~P--d~~eR~~IL~~~l~~~~~~~~d~~l~~L 769 (929)
++....... ..+++++|||.++.+++++.+++||+. .+.++.| +.++|.+|++.+. ..+++.+
T Consensus 180 l~~~~~~~~-----~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~~~~~R~~il~~~~--------~~dl~~~ 246 (456)
T 2c9o_A 180 LQKERVEAG-----DVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVT--------LHDLDVA 246 (456)
T ss_dssp HHHTTCCTT-----EEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCSCSEEEEEEEEEEE--------HHHHHHT
T ss_pred HhhccCCCC-----CEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCchhHHHHHHHHHHHH--------HHHHHHH
Confidence 432111111 136666899999999999999999997 4455555 5577888876433 2358889
Q ss_pred HhhcCCCChhhHHHHHHH
Q 002386 770 ASKCDGYDAYDLEILVDR 787 (929)
Q Consensus 770 A~~teG~s~~DL~~Lv~~ 787 (929)
+..++| ++|+..+|..
T Consensus 247 a~~t~g--gadl~~l~~~ 262 (456)
T 2c9o_A 247 NARPQG--GQDILSMMGQ 262 (456)
T ss_dssp C-----------------
T ss_pred HHhCCC--hhHHHHHHhh
Confidence 999999 9999998854
No 44
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.69 E-value=4.8e-16 Score=173.26 Aligned_cols=217 Identities=17% Similarity=0.238 Sum_probs=158.2
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccc
Q 002386 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSR 631 (929)
Q Consensus 552 ~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~ 631 (929)
++.++.|.+..++.+.+.+..... ...++.++||+||||||||++|+++|+.++ ..++.++|..
T Consensus 27 ~~~~iiG~~~~~~~l~~~l~~~~~----------~~~~~~~vll~G~~GtGKT~la~~ia~~~~------~~~~~~~~~~ 90 (338)
T 3pfi_A 27 NFDGYIGQESIKKNLNVFIAAAKK----------RNECLDHILFSGPAGLGKTTLANIISYEMS------ANIKTTAAPM 90 (338)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHHHH----------TTSCCCCEEEECSTTSSHHHHHHHHHHHTT------CCEEEEEGGG
T ss_pred CHHHhCChHHHHHHHHHHHHHHHh----------cCCCCCeEEEECcCCCCHHHHHHHHHHHhC------CCeEEecchh
Confidence 467889999999888886654321 123346799999999999999999999987 6788899976
Q ss_pred cccCchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccc---------cc
Q 002386 632 LSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEK---------RK 702 (929)
Q Consensus 632 L~~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~---------~~ 702 (929)
+.. .+.. ...+.. ...+.+|||||+|.+.+ .....|...++..... ..
T Consensus 91 ~~~--~~~~----~~~~~~--~~~~~vl~lDEi~~l~~---------------~~~~~Ll~~l~~~~~~~~~~~~~~~~~ 147 (338)
T 3pfi_A 91 IEK--SGDL----AAILTN--LSEGDILFIDEIHRLSP---------------AIEEVLYPAMEDYRLDIIIGSGPAAQT 147 (338)
T ss_dssp CCS--HHHH----HHHHHT--CCTTCEEEEETGGGCCH---------------HHHHHHHHHHHTSCC---------CCC
T ss_pred ccc--hhHH----HHHHHh--ccCCCEEEEechhhcCH---------------HHHHHHHHHHHhccchhhcccCccccc
Confidence 642 2222 223322 25678999999998842 4555666666654310 00
Q ss_pred CccCCCcEEEEEecCCCCccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhhcccccCHHHHHHHHhhcCCCChhhHH
Q 002386 703 SSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLE 782 (929)
Q Consensus 703 ~~~~~~~VivIattn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~d~~l~~LA~~teG~s~~DL~ 782 (929)
......++.+|++||....++++|++ ||+..++|++|+.+++.++++..+...+..++++.+..++..+.| +++++.
T Consensus 148 ~~~~~~~~~~i~atn~~~~l~~~L~~--R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~l~ 224 (338)
T 3pfi_A 148 IKIDLPKFTLIGATTRAGMLSNPLRD--RFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRS-TPRIAL 224 (338)
T ss_dssp CCCCCCCCEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTT-CHHHHH
T ss_pred eecCCCCeEEEEeCCCccccCHHHHh--hcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCc-CHHHHH
Confidence 01111248999999999999999999 998899999999999999999999888888899999999996665 678888
Q ss_pred HHHHHHHHHHhhccccCCccccccccccccccccccccc
Q 002386 783 ILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMH 821 (929)
Q Consensus 783 ~Lv~~A~~~a~~r~~~~~~~~~~~~~~~lt~edf~~al~ 821 (929)
.+++++...+... ....++.+++..++.
T Consensus 225 ~~l~~~~~~a~~~-----------~~~~i~~~~~~~~~~ 252 (338)
T 3pfi_A 225 RLLKRVRDFADVN-----------DEEIITEKRANEALN 252 (338)
T ss_dssp HHHHHHHHHHHHT-----------TCSEECHHHHHHHHH
T ss_pred HHHHHHHHHHHhh-----------cCCccCHHHHHHHHH
Confidence 8888887655433 123466666655544
No 45
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.68 E-value=3.6e-16 Score=169.05 Aligned_cols=206 Identities=16% Similarity=0.228 Sum_probs=140.8
Q ss_pred ccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccc-cc
Q 002386 555 SLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSR-LS 633 (929)
Q Consensus 555 ~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~-L~ 633 (929)
.+.|.+..++++.+....+.. .....+..++.++||+||||||||++|+++|+.++ .+++.++|.+ +.
T Consensus 34 ~~i~~~~~~~~i~~~~~~l~~-----~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~------~~~~~i~~~~~~~ 102 (272)
T 1d2n_A 34 GIIKWGDPVTRVLDDGELLVQ-----QTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESN------FPFIKICSPDKMI 102 (272)
T ss_dssp CCCCCSHHHHHHHHHHHHHHH-----HHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHT------CSEEEEECGGGCT
T ss_pred CCCCccHHHHHHHHHHHHHHH-----HHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhC------CCEEEEeCHHHhc
Confidence 445666677777664221111 11122345567899999999999999999999976 6778887764 44
Q ss_pred cCchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCCCcEEEE
Q 002386 634 LEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFV 713 (929)
Q Consensus 634 ~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~VivI 713 (929)
+.........+..+|..+....+++|||||+|.+++.+.... .....+.+.|...++...... .++++|
T Consensus 103 g~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~-----~~~~~~l~~L~~~~~~~~~~~------~~~~ii 171 (272)
T 1d2n_A 103 GFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGP-----RFSNLVLQALLVLLKKAPPQG------RKLLII 171 (272)
T ss_dssp TCCHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTT-----BCCHHHHHHHHHHTTCCCSTT------CEEEEE
T ss_pred CCchHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCCh-----hHHHHHHHHHHHHhcCccCCC------CCEEEE
Confidence 554455556788888888877899999999999975322111 112356666666655432211 258899
Q ss_pred EecCCCCcccc-ccccCCCcceEeeCCCCcH-HHHHHHHHHHHhhcccccCHHHHHHHHhhcCCC----ChhhHHHHHHH
Q 002386 714 ASAQSLEKIPQ-SLTSSGRFDFHVQLPAPAA-SERKAILEHEIQRRSLECSDEILLDVASKCDGY----DAYDLEILVDR 787 (929)
Q Consensus 714 attn~~~~L~~-~L~~~~Rf~~~i~l~~Pd~-~eR~~IL~~~l~~~~~~~~d~~l~~LA~~teG~----s~~DL~~Lv~~ 787 (929)
+|+|.++.+++ .+.+ ||...+++|+++. ++..+++.. . ..++++.+..++..+.|| +.+++.+++++
T Consensus 172 ~ttn~~~~l~~~~l~~--rf~~~i~~p~l~~r~~i~~i~~~---~--~~~~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~ 244 (272)
T 1d2n_A 172 GTTSRKDVLQEMEMLN--AFSTTIHVPNIATGEQLLEALEL---L--GNFKDKERTTIAQQVKGKKVWIGIKKLLMLIEM 244 (272)
T ss_dssp EEESCHHHHHHTTCTT--TSSEEEECCCEEEHHHHHHHHHH---H--TCSCHHHHHHHHHHHTTSEEEECHHHHHHHHHH
T ss_pred EecCChhhcchhhhhc--ccceEEcCCCccHHHHHHHHHHh---c--CCCCHHHHHHHHHHhcCCCccccHHHHHHHHHH
Confidence 99999888887 5666 9999999988766 444444443 2 245788899999999998 45666666666
Q ss_pred HH
Q 002386 788 TV 789 (929)
Q Consensus 788 A~ 789 (929)
|.
T Consensus 245 a~ 246 (272)
T 1d2n_A 245 SL 246 (272)
T ss_dssp HT
T ss_pred Hh
Confidence 53
No 46
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.68 E-value=5e-16 Score=170.29 Aligned_cols=251 Identities=17% Similarity=0.183 Sum_probs=161.4
Q ss_pred ccccchhHHHHHHHHHHHh-cCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccccc
Q 002386 555 SLSWMGTTASDVINRIKVL-LSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLS 633 (929)
Q Consensus 555 ~l~g~~~~~~~i~~~l~~l-l~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~ 633 (929)
.+.|++.+++.+...+... .......... ....+.++||+||||||||++|+++|+.++ .++++++|+.+.
T Consensus 16 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~--~~~~~~~vll~G~~GtGKT~la~~la~~l~------~~~~~i~~~~~~ 87 (310)
T 1ofh_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLR--HEVTPKNILMIGPTGVGKTEIARRLAKLAN------APFIKVEATKFT 87 (310)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTTSSCHHHH--HHCCCCCEEEECCTTSSHHHHHHHHHHHHT------CCEEEEEGGGGS
T ss_pred hcCChHHHHHHHHHHHHHHHhhhhhccccc--ccCCCceEEEECCCCCCHHHHHHHHHHHhC------CCEEEEcchhcc
Confidence 4678888888887766431 1111000000 113456899999999999999999999986 678999998876
Q ss_pred c-Cchhh-HHHHHHHHHHHH-----HhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccc-cCcc
Q 002386 634 L-EKGPI-IRQALSNFISEA-----LDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKR-KSSC 705 (929)
Q Consensus 634 ~-~~~~~-~~~~l~~~f~~a-----~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~-~~~~ 705 (929)
. .+.+. ....+.+++..+ ....++||||||+|.+.+... ..........+.+.|+..+++..-.. ....
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~---~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~ 164 (310)
T 1ofh_A 88 EVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGE---YSGADVSREGVQRDLLPLVEGSTVSTKHGMV 164 (310)
T ss_dssp SCCSGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSS---CCSSHHHHHHHHHHHHHHHHCCEEEETTEEE
T ss_pred cCCccCccHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCcccc---ccccchhHHHHHHHHHHHhcCCeEecccccc
Confidence 4 23221 223344444422 112467999999999974221 12222333455677777777532100 0001
Q ss_pred CCCcEEEEEe----cCCCCccccccccCCCcceEeeCCCCcHHHHHHHHHH----H-------Hhhc--ccccCHHHHHH
Q 002386 706 GIGPIAFVAS----AQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEH----E-------IQRR--SLECSDEILLD 768 (929)
Q Consensus 706 ~~~~VivIat----tn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~----~-------l~~~--~~~~~d~~l~~ 768 (929)
...++++|++ ++.+..++++|.+ ||+..++|++|+.+++.+|++. + +... .+.++++.++.
T Consensus 165 ~~~~~~~i~~~~~~~~~~~~l~~~l~~--R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 242 (310)
T 1ofh_A 165 KTDHILFIASGAFQVARPSDLIPELQG--RLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKK 242 (310)
T ss_dssp ECTTCEEEEEECCSSSCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHHHH
T ss_pred cCCcEEEEEcCCcccCCcccCCHHHHh--hCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHHHHH
Confidence 1124778887 4567789999998 9998899999999999999983 1 1122 24688999999
Q ss_pred HHhhcC-------CCChhhHHHHHHHHHHHHhhccccCCccccccccccccccccccccccc
Q 002386 769 VASKCD-------GYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEF 823 (929)
Q Consensus 769 LA~~te-------G~s~~DL~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~lt~edf~~al~~~ 823 (929)
++..+. +.+++.+..++++++..+..+... .......++.+++.+++...
T Consensus 243 l~~~~~~~~~~~~~g~~R~l~~~l~~~~~~~~~~~~~-----~~~~~~~i~~~~v~~~l~~~ 299 (310)
T 1ofh_A 243 IAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASD-----MNGQTVNIDAAYVADALGEV 299 (310)
T ss_dssp HHHHHHHHHHHSCCCTTHHHHHHHHHHSHHHHHHGGG-----CTTCEEEECHHHHHHHTCSS
T ss_pred HHHHhhhhcccccccCcHHHHHHHHHHHHhhhcCCcc-----ccCCEEEEeeHHHHHHHHhh
Confidence 988873 568999999999987665433210 01112347888888777653
No 47
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.67 E-value=6.6e-16 Score=174.23 Aligned_cols=253 Identities=17% Similarity=0.127 Sum_probs=162.0
Q ss_pred cccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccccccC
Q 002386 556 LSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLE 635 (929)
Q Consensus 556 l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~~~ 635 (929)
+.|++.+++.+...+..................++.++||+||||||||++|+++|+.++ .+++.++|..+...
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~------~~~~~~~~~~l~~~ 90 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLD------VPFTMADATTLTEA 90 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTT------CCEEEEEHHHHTTC
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcC------CCEEEechHHhccc
Confidence 467888888887766321110000000001123457899999999999999999999987 78999999987743
Q ss_pred -chhhH-HHHHHHHHHHH----HhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccc----cc---
Q 002386 636 -KGPII-RQALSNFISEA----LDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEK----RK--- 702 (929)
Q Consensus 636 -~~~~~-~~~l~~~f~~a----~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~----~~--- 702 (929)
+.+.. ...+..+|..+ ....++||||||+|.+.+.+..... ........+...|+..|++.... ..
T Consensus 91 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~-~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~ 169 (363)
T 3hws_A 91 GYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSI-TRDVSGEGVQQALLKLIEGTVAAVPPQGGRKH 169 (363)
T ss_dssp HHHHHHHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC----CHHHHHHHHHHHHHHHHCC------------
T ss_pred ccccccHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhccccccccc-ccccchHHHHHHHHHHhcCceeeccCcccccc
Confidence 44443 55666676665 3345789999999999754322221 12223345788888888832100 00
Q ss_pred -----CccCCCcEEEEEecCCC----------Cc-----------------------------------cccccccCCCc
Q 002386 703 -----SSCGIGPIAFVASAQSL----------EK-----------------------------------IPQSLTSSGRF 732 (929)
Q Consensus 703 -----~~~~~~~VivIattn~~----------~~-----------------------------------L~~~L~~~~Rf 732 (929)
......++++|++++.. .. +++.|.+ ||
T Consensus 170 ~~~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~--R~ 247 (363)
T 3hws_A 170 PQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIG--RL 247 (363)
T ss_dssp ----CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHT--TC
T ss_pred CCCceEEEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhc--cc
Confidence 01111245666665532 11 5677777 99
Q ss_pred ceEeeCCCCcHHHHHHHHHH----HHh---------hcccccCHHHHHHHHhh--cCCCChhhHHHHHHHHHHHHhhccc
Q 002386 733 DFHVQLPAPAASERKAILEH----EIQ---------RRSLECSDEILLDVASK--CDGYDAYDLEILVDRTVHAAVGRYL 797 (929)
Q Consensus 733 ~~~i~l~~Pd~~eR~~IL~~----~l~---------~~~~~~~d~~l~~LA~~--teG~s~~DL~~Lv~~A~~~a~~r~~ 797 (929)
+..+.|++|+.+++.+|+.. ++. ...+.++++.++.|+.. ...+.+++|++++++++..++.+..
T Consensus 248 ~~~~~~~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~~~ie~~~~~~l~~~~ 327 (363)
T 3hws_A 248 PVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYDLP 327 (363)
T ss_dssp CEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHSTT
T ss_pred CeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCccCchHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999885 222 12345789999999864 4667789999999999998887753
Q ss_pred cCCccccccccccccccccccccc
Q 002386 798 HSDSSFEKHIKPTLVRDDFSQAMH 821 (929)
Q Consensus 798 ~~~~~~~~~~~~~lt~edf~~al~ 821 (929)
... ......++.+++.+.+.
T Consensus 328 ~~~----~~~~~~I~~~~v~~~~~ 347 (363)
T 3hws_A 328 SME----DVEKVVIDESVIDGQSE 347 (363)
T ss_dssp TCC----CSEEEECHHHHTTCCSC
T ss_pred ccc----CCceeEEcHHHHhCcCC
Confidence 110 11224567677666543
No 48
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.63 E-value=7e-16 Score=207.31 Aligned_cols=293 Identities=19% Similarity=0.196 Sum_probs=165.5
Q ss_pred CceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccccccCchhhHHHHHHHHHHHHH-----------hcCCcE
Q 002386 590 PGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEAL-----------DHAPSI 658 (929)
Q Consensus 590 ~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~~~~~~~~~~~l~~~f~~a~-----------~~~PsV 658 (929)
++++||+||||||||++|+.++..+. . ..+..++++...+ ...+.+.+...+.... ..++.|
T Consensus 1267 ~~~vLL~GPpGtGKT~la~~~l~~~~---~--~~~~~infsa~ts--~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~V 1339 (2695)
T 4akg_A 1267 KRGIILCGPPGSGKTMIMNNALRNSS---L--YDVVGINFSKDTT--TEHILSALHRHTNYVTTSKGLTLLPKSDIKNLV 1339 (2695)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHSCS---S--CEEEEEECCTTCC--HHHHHHHHHHHBCCEEETTTEEEEEBSSSSCEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHhcCC---C--CceEEEEeecCCC--HHHHHHHHHHHhhhccccCCccccCCCCCceEE
Confidence 36899999999999999966654431 1 5677788876653 2233333332221111 123469
Q ss_pred EEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHH--hcc-cccCccCCCcEEEEEecCCCC-----ccccccccCC
Q 002386 659 VIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDE--YGE-KRKSSCGIGPIAFVASAQSLE-----KIPQSLTSSG 730 (929)
Q Consensus 659 L~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~--~~~-~~~~~~~~~~VivIattn~~~-----~L~~~L~~~~ 730 (929)
|||||+|... .+..+.+ ...+.|...++. +.. +........++.+|||+|++. .++++|.|
T Consensus 1340 lFiDEinmp~---~d~yg~q------~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllR-- 1408 (2695)
T 4akg_A 1340 LFCDEINLPK---LDKYGSQ------NVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTR-- 1408 (2695)
T ss_dssp EEEETTTCSC---CCSSSCC------HHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHT--
T ss_pred EEeccccccc---ccccCch------hHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhh--
Confidence 9999998753 2333332 344555555653 111 111112224689999999984 79999999
Q ss_pred CcceEeeCCCCcHHHHHHHHHHHHhhccc---c---cCH-------HHHHHHHhh-------cCCCChhhHHHHHHHHHH
Q 002386 731 RFDFHVQLPAPAASERKAILEHEIQRRSL---E---CSD-------EILLDVASK-------CDGYDAYDLEILVDRTVH 790 (929)
Q Consensus 731 Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~---~---~~d-------~~l~~LA~~-------teG~s~~DL~~Lv~~A~~ 790 (929)
|| ..+.++.|+.+++..|+..++...-. . +.+ +.+..+... ..-|+.+||..+++....
T Consensus 1409 rf-~vi~i~~P~~~~l~~I~~~il~~~l~~~~~v~~~~~~lv~ati~~y~~v~~~~~~~~k~HY~FnlRDLsrv~qGll~ 1487 (2695)
T 4akg_A 1409 HA-AILYLGYPSGKSLSQIYEIYYKAIFKLVPEFRSYTEPFARASVHLYNECKARYSTGLQSHYLFSPRELTRLVRGVYT 1487 (2695)
T ss_dssp TE-EEEECCCCTTTHHHHHHHHHHHHHTTSSGGGGGGHHHHHHHHHHHHHHHHHHSCTTTCTTCCCCHHHHHHHHHHHHH
T ss_pred ee-eEEEeCCCCHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCcccCHHHHHHHHHHHHh
Confidence 88 58999999999999999988764210 0 111 112222221 245778888776655433
Q ss_pred H-------------------HhhccccCCccccccccccccccc---ccccccccccccccccc----cccc----CCCC
Q 002386 791 A-------------------AVGRYLHSDSSFEKHIKPTLVRDD---FSQAMHEFLPVAMRDIT----KTSA----EGGR 840 (929)
Q Consensus 791 ~-------------------a~~r~~~~~~~~~~~~~~~lt~ed---f~~al~~~~P~slr~v~----l~~~----~~~~ 840 (929)
. +.+-+. .+.++.+| |.+.+.+.......... ...+ +...
T Consensus 1488 ~~~~~~~~~~~~l~rLw~HE~~Rvf~----------DRLv~~~D~~~f~~~l~~~~~~~f~~~~~~~~~~~~~~f~df~~ 1557 (2695)
T 4akg_A 1488 AINTGPRQTLRSLIRLWAYEAWRIFA----------DRLVGVKEKNSFEQLLYETVDKYLPNQDLGNISSTSLLFSGLLS 1557 (2695)
T ss_dssp HHHTSSCCCHHHHHHHHHHHHHHHHT----------TTCCSSHHHHHHHHHHHHHHHHHSCCSCCCCCSTTTCCEESSSS
T ss_pred cCchhhhccHHHHHHHHHHHHHHHHH----------HhcCCHHHHHHHHHHHHHHHHHHhcccchhhhccCCceeeecCC
Confidence 2 221110 11122222 11111110000000000 0000 0011
Q ss_pred CccCCCCCchhhHHHHHHHHhcC---------------CCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHcCCc
Q 002386 841 SGWDDVGGLTDIQNAIKEMIELP---------------SKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLR 905 (929)
Q Consensus 841 ~~w~dIgGL~~vk~~L~e~le~p---------------~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~gln 905 (929)
..|.++.. +++++.+.+.++.. +.|--...+.-..+++++||+|.+|||||+|++.+|..+|+.
T Consensus 1558 ~~Y~~v~~-~~l~~~l~~~l~~yn~~~~~m~LVlF~dai~Hi~RI~Ril~~p~G~~LLvGvgGsGkqSltrLaa~i~~~~ 1636 (2695)
T 4akg_A 1558 LDFKEVNK-TDLVNFIEERFKTFCDEELEVPMVIHESMVDHILRIDRALKQVQGHMMLIGASRTGKTILTRFVAWLNGLK 1636 (2695)
T ss_dssp SSCEECCH-HHHHHHHHHHHHHHHHHSCCCCCCCCHHHHHHHHHHHHHHHSSSEEEEEECTTTSCHHHHHHHHHHHTTCE
T ss_pred CcceecCH-HHHHHHHHHHHHHHHhhcCCceeeeHHHHHHHHHHHHHHHcCCCCCEEEECCCCCcHHHHHHHHHHHhCCe
Confidence 23555543 55666666666531 122223333334678899999999999999999999999999
Q ss_pred eEEEecc
Q 002386 906 FISVKGP 912 (929)
Q Consensus 906 fIsVkg~ 912 (929)
++.|...
T Consensus 1637 ~fqi~~~ 1643 (2695)
T 4akg_A 1637 IVQPKIH 1643 (2695)
T ss_dssp EECCCCC
T ss_pred eEEEEee
Confidence 9999754
No 49
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.63 E-value=1e-15 Score=181.48 Aligned_cols=231 Identities=19% Similarity=0.299 Sum_probs=147.7
Q ss_pred ccccchhHHHHHHHHHH-HhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccccc
Q 002386 555 SLSWMGTTASDVINRIK-VLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLS 633 (929)
Q Consensus 555 ~l~g~~~~~~~i~~~l~-~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~ 633 (929)
++.|++..++.+.+.+. ..+... . ++.+++|+||||||||++|+++|..++ ..+..++|..+.
T Consensus 82 di~G~~~vk~~i~~~~~l~~~~~~---------~-~g~~vll~Gp~GtGKTtlar~ia~~l~------~~~~~i~~~~~~ 145 (543)
T 3m6a_A 82 EHHGLEKVKERILEYLAVQKLTKS---------L-KGPILCLAGPPGVGKTSLAKSIAKSLG------RKFVRISLGGVR 145 (543)
T ss_dssp HCSSCHHHHHHHHHHHHHHHHSSS---------C-CSCEEEEESSSSSSHHHHHHHHHHHHT------CEEEEECCCC--
T ss_pred HhccHHHHHHHHHHHHHHHHhccc---------C-CCCEEEEECCCCCCHHHHHHHHHHhcC------CCeEEEEecccc
Confidence 46778888777766543 111211 2 456799999999999999999999987 677888887643
Q ss_pred c---------CchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccc---
Q 002386 634 L---------EKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKR--- 701 (929)
Q Consensus 634 ~---------~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~--- 701 (929)
. .+.+...+.+...|..+....| ++||||+|.+.+.. .+ .....|+..|+......
T Consensus 146 ~~~~~~g~~~~~ig~~~~~~~~~~~~a~~~~~-vl~lDEid~l~~~~---~~--------~~~~~LL~~ld~~~~~~~~~ 213 (543)
T 3m6a_A 146 DESEIRGHRRTYVGAMPGRIIQGMKKAGKLNP-VFLLDEIDKMSSDF---RG--------DPSSAMLEVLDPEQNSSFSD 213 (543)
T ss_dssp ------------------CHHHHHHTTCSSSE-EEEEEESSSCC--------------------CCGGGTCTTTTTBCCC
T ss_pred hhhhhhhHHHHHhccCchHHHHHHHHhhccCC-EEEEhhhhhhhhhh---cc--------CHHHHHHHHHhhhhcceeec
Confidence 2 3344445556666776655555 99999999987421 10 12334555555332110
Q ss_pred ---cCccCCCcEEEEEecCCCCccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhh-----c-----ccccCHHHHHH
Q 002386 702 ---KSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQR-----R-----SLECSDEILLD 768 (929)
Q Consensus 702 ---~~~~~~~~VivIattn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~-----~-----~~~~~d~~l~~ 768 (929)
.......++++|+|+|..+.++++|++ ||. .++|++|+.+++.+|++.++.. . .+.++++.+..
T Consensus 214 ~~~~~~~~~~~v~iI~ttN~~~~l~~aL~~--R~~-vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~ 290 (543)
T 3m6a_A 214 HYIEETFDLSKVLFIATANNLATIPGPLRD--RME-IINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILD 290 (543)
T ss_dssp SSSCCCCBCSSCEEEEECSSTTTSCHHHHH--HEE-EEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHH
T ss_pred ccCCeeecccceEEEeccCccccCCHHHHh--hcc-eeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHH
Confidence 001111468999999999999999999 996 7999999999999999987632 1 34578888888
Q ss_pred HHhhcC-CCChhhHHHHHHHHHHHHhhccccCCccccccccccccccccccccc
Q 002386 769 VASKCD-GYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMH 821 (929)
Q Consensus 769 LA~~te-G~s~~DL~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~lt~edf~~al~ 821 (929)
++.... ....++|++.+++++..+..+.... ......++.+++.+++.
T Consensus 291 l~~~~~~~~~vR~L~~~i~~~~~~aa~~~~~~-----~~~~~~It~~~l~~~Lg 339 (543)
T 3m6a_A 291 IIRYYTREAGVRSLERQLAAICRKAAKAIVAE-----ERKRITVTEKNLQDFIG 339 (543)
T ss_dssp HHHHHCCCSSSHHHHHHHHHHHHHHHHHHHTT-----CCSCCEECTTTTHHHHC
T ss_pred HHHhCChhhchhHHHHHHHHHHHHHHHHHHhc-----CCcceecCHHHHHHHhC
Confidence 777444 3567788777777666555443211 11234577777766654
No 50
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.63 E-value=3.9e-15 Score=164.54 Aligned_cols=200 Identities=16% Similarity=0.209 Sum_probs=144.4
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccc
Q 002386 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSR 631 (929)
Q Consensus 552 ~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~ 631 (929)
++.++.|.+..++.+.+.+..... ....+.++||+||||||||++|+++++.++ ..+.+++|..
T Consensus 10 ~~~~~ig~~~~~~~l~~~l~~~~~----------~~~~~~~vll~G~~GtGKT~la~~i~~~~~------~~~~~~~~~~ 73 (324)
T 1hqc_A 10 TLDEYIGQERLKQKLRVYLEAAKA----------RKEPLEHLLLFGPPGLGKTTLAHVIAHELG------VNLRVTSGPA 73 (324)
T ss_dssp STTTCCSCHHHHHHHHHHHHHHHH----------HCSCCCCCEEECCTTCCCHHHHHHHHHHHT------CCEEEECTTT
T ss_pred cHHHhhCHHHHHHHHHHHHHHHHc----------cCCCCCcEEEECCCCCCHHHHHHHHHHHhC------CCEEEEeccc
Confidence 356788888888888776543221 012346799999999999999999999987 6788889887
Q ss_pred cccCchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccc-----ccCc--
Q 002386 632 LSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEK-----RKSS-- 704 (929)
Q Consensus 632 L~~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~-----~~~~-- 704 (929)
+.. .+. +...|.. ....+.+|||||+|.+.. .....|...++...-. ....
T Consensus 74 ~~~--~~~----l~~~l~~-~~~~~~~l~lDEi~~l~~---------------~~~~~L~~~l~~~~~~~v~~~~~~~~~ 131 (324)
T 1hqc_A 74 IEK--PGD----LAAILAN-SLEEGDILFIDEIHRLSR---------------QAEEHLYPAMEDFVMDIVIGQGPAART 131 (324)
T ss_dssp CCS--HHH----HHHHHTT-TCCTTCEEEETTTTSCCH---------------HHHHHHHHHHHHSEEEECCSSSSSCCC
T ss_pred cCC--hHH----HHHHHHH-hccCCCEEEEECCccccc---------------chHHHHHHHHHhhhhHHhccccccccc
Confidence 643 122 2222222 124678999999998742 3345556666654311 0000
Q ss_pred --cCCCcEEEEEecCCCCccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhhcccccCHHHHHHHHhhcCCCChhhHH
Q 002386 705 --CGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLE 782 (929)
Q Consensus 705 --~~~~~VivIattn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~d~~l~~LA~~teG~s~~DL~ 782 (929)
....++.+|+++|....++++|.+ ||...+.+++|+.+++.++++.++...+..++++.+..++..+.| .++++.
T Consensus 132 ~~~~~~~~~~i~~t~~~~~~~~~l~~--R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~l~ 208 (324)
T 1hqc_A 132 IRLELPRFTLIGATTRPGLITAPLLS--RFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRG-TMRVAK 208 (324)
T ss_dssp EEEECCCCEEEEEESCCSSCSCSTTT--TCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCS-CHHHHH
T ss_pred cccCCCCEEEEEeCCCcccCCHHHHh--cccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccC-CHHHHH
Confidence 011247899999999999999998 998899999999999999999999887888999999999999866 567888
Q ss_pred HHHHHHHHHH
Q 002386 783 ILVDRTVHAA 792 (929)
Q Consensus 783 ~Lv~~A~~~a 792 (929)
.+++++...+
T Consensus 209 ~~l~~~~~~a 218 (324)
T 1hqc_A 209 RLFRRVRDFA 218 (324)
T ss_dssp HHHHHHTTTS
T ss_pred HHHHHHHHHH
Confidence 8887765433
No 51
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.61 E-value=1.5e-14 Score=159.01 Aligned_cols=214 Identities=16% Similarity=0.215 Sum_probs=148.4
Q ss_pred ccccchhHHHHHHHHHHHhc-CCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccccc
Q 002386 555 SLSWMGTTASDVINRIKVLL-SPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLS 633 (929)
Q Consensus 555 ~l~g~~~~~~~i~~~l~~ll-~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~ 633 (929)
.+.|.+.+++.+...+.... ... ....+..++||+||||||||++|+++|+.+.... .++++++|+.+.
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~-------~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~---~~~~~~~~~~~~ 87 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLK-------DPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTE---EAMIRIDMTEYM 87 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCS-------CTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCG---GGEEEEEGGGCC
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCC-------CCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCC---cceEEeeccccc
Confidence 45678888888887765321 100 0112335799999999999999999999985332 458889998765
Q ss_pred cCchhhHHHHH-----------HHHHHHH-HhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccc
Q 002386 634 LEKGPIIRQAL-----------SNFISEA-LDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKR 701 (929)
Q Consensus 634 ~~~~~~~~~~l-----------~~~f~~a-~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~ 701 (929)
..... ...+ ...+..+ ....+++|||||+|.+.+ .....|+..++...-..
T Consensus 88 ~~~~~--~~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~~---------------~~~~~Ll~~le~~~~~~ 150 (311)
T 4fcw_A 88 EKHAV--SRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKAHP---------------DVFNILLQMLDDGRLTD 150 (311)
T ss_dssp STTHH--HHHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGSCH---------------HHHHHHHHHHHHSEEEC
T ss_pred ccccH--HHhcCCCCccccccccchHHHHHHhCCCeEEEEeChhhcCH---------------HHHHHHHHHHhcCEEEc
Confidence 43211 1111 0122222 223457999999998842 55667777777643211
Q ss_pred --cCccCCCcEEEEEecCC--------------------------CCccccccccCCCcceEeeCCCCcHHHHHHHHHHH
Q 002386 702 --KSSCGIGPIAFVASAQS--------------------------LEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHE 753 (929)
Q Consensus 702 --~~~~~~~~VivIattn~--------------------------~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~ 753 (929)
.......++++|+|+|. ...+++.|.+ ||+..+.+++|+.+++.+|++.+
T Consensus 151 ~~~~~~~~~~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~--R~~~~~~~~p~~~~~~~~i~~~~ 228 (311)
T 4fcw_A 151 SHGRTVDFRNTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQ 228 (311)
T ss_dssp TTSCEEECTTEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHH
T ss_pred CCCCEEECCCcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHh--cCCeEEEeCCCCHHHHHHHHHHH
Confidence 01111235779999998 4467788887 99999999999999999999987
Q ss_pred Hhhc---------ccccCHHHHHHHHhhcC--CCChhhHHHHHHHHHHHHhhccc
Q 002386 754 IQRR---------SLECSDEILLDVASKCD--GYDAYDLEILVDRTVHAAVGRYL 797 (929)
Q Consensus 754 l~~~---------~~~~~d~~l~~LA~~te--G~s~~DL~~Lv~~A~~~a~~r~~ 797 (929)
+.+. ...++++.+..++.... .++.++|+.++++++..++.+.+
T Consensus 229 l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~gn~R~L~~~i~~~~~~~~~~~i 283 (311)
T 4fcw_A 229 MSYLRARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQKI 283 (311)
T ss_dssp THHHHHHHHTTTCEEEECHHHHHHHHHHSCBTTTBTTTHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHhCCcEEEeCHHHHHHHHHhCCCccCCchhHHHHHHHHHHHHHHHHH
Confidence 7642 35588999999999876 67899999999999887776543
No 52
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.61 E-value=3.2e-16 Score=169.82 Aligned_cols=90 Identities=48% Similarity=0.797 Sum_probs=81.0
Q ss_pred CCCccCCCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHcCCceEEEecccccccc
Q 002386 839 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKY 918 (929)
Q Consensus 839 ~~~~w~dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~glnfIsVkg~ELl~ky 918 (929)
+.+.|+||||++++|+.|++.+.||.+++++|.+.++.++.|+|||||||||||+||+++|++++.+||.++|+++.++|
T Consensus 5 ~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~~ 84 (274)
T 2x8a_A 5 PNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMY 84 (274)
T ss_dssp -------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSST
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhhh
Confidence 35899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cChhhHHHhh
Q 002386 919 IGASEQAVRR 928 (929)
Q Consensus 919 IG~SEq~VRd 928 (929)
+|++|++++.
T Consensus 85 ~~~~~~~i~~ 94 (274)
T 2x8a_A 85 VGESERAVRQ 94 (274)
T ss_dssp THHHHHHHHH
T ss_pred hhHHHHHHHH
Confidence 9999998874
No 53
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.61 E-value=5.3e-16 Score=172.11 Aligned_cols=89 Identities=36% Similarity=0.703 Sum_probs=83.5
Q ss_pred CCCccCCCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHc-CCceEEEeccccccc
Q 002386 839 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC-SLRFISVKGPELLNK 917 (929)
Q Consensus 839 ~~~~w~dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~-glnfIsVkg~ELl~k 917 (929)
+.+.|+||||++++|+.|++.+.||++++++|.. ...++.|+|||||||||||++|+++|+++ +.+|+.+++++++++
T Consensus 7 ~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~~ 85 (322)
T 1xwi_A 7 PNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSK 85 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCT-TCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCCS
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhC-CCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHhh
Confidence 3589999999999999999999999999999985 35678999999999999999999999999 999999999999999
Q ss_pred ccChhhHHHhh
Q 002386 918 YIGASEQAVRR 928 (929)
Q Consensus 918 yIG~SEq~VRd 928 (929)
|+|++|+.+|+
T Consensus 86 ~~g~~~~~~~~ 96 (322)
T 1xwi_A 86 WLGESEKLVKN 96 (322)
T ss_dssp SCCSCHHHHHH
T ss_pred hhhHHHHHHHH
Confidence 99999999875
No 54
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.60 E-value=3.3e-16 Score=172.17 Aligned_cols=89 Identities=43% Similarity=0.896 Sum_probs=86.1
Q ss_pred CCccCCCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHcCCceEEEeccccccccc
Q 002386 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYI 919 (929)
Q Consensus 840 ~~~w~dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~glnfIsVkg~ELl~kyI 919 (929)
.+.|+||+|++++++.|++.+.+|+++++.|.+.+++++.|+|||||||||||++|+++|++++.+|+.+++++++++|+
T Consensus 11 ~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~~~ 90 (301)
T 3cf0_A 11 QVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWF 90 (301)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhhhc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHhh
Q 002386 920 GASEQAVRR 928 (929)
Q Consensus 920 G~SEq~VRd 928 (929)
|++|+.+|+
T Consensus 91 g~~~~~~~~ 99 (301)
T 3cf0_A 91 GESEANVRE 99 (301)
T ss_dssp TTCTTHHHH
T ss_pred CchHHHHHH
Confidence 999998864
No 55
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.59 E-value=3.1e-14 Score=147.01 Aligned_cols=191 Identities=17% Similarity=0.221 Sum_probs=135.1
Q ss_pred ccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEecccc
Q 002386 553 VSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRL 632 (929)
Q Consensus 553 ~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L 632 (929)
+.++.|.+..++.+.+.+.. ....+++|+||+|||||++++++++.+.... ....++.++|...
T Consensus 16 ~~~~~g~~~~~~~l~~~l~~---------------~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~-~~~~~~~~~~~~~ 79 (226)
T 2chg_A 16 LDEVVGQDEVIQRLKGYVER---------------KNIPHLLFSGPPGTGKTATAIALARDLFGEN-WRDNFIEMNASDE 79 (226)
T ss_dssp GGGCCSCHHHHHHHHHHHHT---------------TCCCCEEEECSTTSSHHHHHHHHHHHHHGGG-GGGGEEEEETTCT
T ss_pred HHHHcCcHHHHHHHHHHHhC---------------CCCCeEEEECCCCCCHHHHHHHHHHHHhccc-cccceEEeccccc
Confidence 45677888888877765421 1123599999999999999999999874332 2245777888654
Q ss_pred ccCchhhHHHHHHHHHHHH--HhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCCCcE
Q 002386 633 SLEKGPIIRQALSNFISEA--LDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPI 710 (929)
Q Consensus 633 ~~~~~~~~~~~l~~~f~~a--~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V 710 (929)
.+ .......+....... ....+.+|||||+|.+.+ ...+.|...++.... ++
T Consensus 80 ~~--~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~---------------~~~~~l~~~l~~~~~---------~~ 133 (226)
T 2chg_A 80 RG--IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA---------------DAQAALRRTMEMYSK---------SC 133 (226)
T ss_dssp TC--HHHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCH---------------HHHHHHHHHHHHTTT---------TE
T ss_pred cC--hHHHHHHHHHHhcccCCCccCceEEEEeChhhcCH---------------HHHHHHHHHHHhcCC---------CC
Confidence 43 222233232222111 124678999999999852 234456666665321 47
Q ss_pred EEEEecCCCCccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhhcccccCHHHHHHHHhhcCCCChhhHHHHHHHHH
Q 002386 711 AFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTV 789 (929)
Q Consensus 711 ivIattn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~d~~l~~LA~~teG~s~~DL~~Lv~~A~ 789 (929)
.+|++++....+++.+.+ ||. .+++++|+.+++.++++..+...+..++++.+..++..+.| +++.+..+++++.
T Consensus 134 ~~i~~~~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~~ 208 (226)
T 2chg_A 134 RFILSCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG-DFRKAINALQGAA 208 (226)
T ss_dssp EEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTT-CHHHHHHHHHHHH
T ss_pred eEEEEeCChhhcCHHHHH--hCc-eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 788888988889999988 887 89999999999999999998877888899999999988766 5666666666654
No 56
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.58 E-value=1.2e-14 Score=159.69 Aligned_cols=226 Identities=12% Similarity=0.135 Sum_probs=145.7
Q ss_pred cccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCcc----ceeeEEEEeccc
Q 002386 556 LSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKD----LVAHIVFVCCSR 631 (929)
Q Consensus 556 l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~----~~~~~~~V~~s~ 631 (929)
|.+.+..++++...+...+. ...+.+++|+||||||||++++++++++..... ....+++++|..
T Consensus 22 L~~Re~E~~~i~~~L~~~i~-----------~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~ 90 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLM-----------SSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALE 90 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-----------TTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTC
T ss_pred cCCHHHHHHHHHHHHHHHhc-----------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccc
Confidence 44567777777776654332 334578999999999999999999999964321 136789999977
Q ss_pred cccCc----------------hhhHHHHHHHHHHHH--HhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHH
Q 002386 632 LSLEK----------------GPIIRQALSNFISEA--LDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDI 693 (929)
Q Consensus 632 L~~~~----------------~~~~~~~l~~~f~~a--~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ 693 (929)
+.... .+.....+...|... ....+.|++|||+|.+.. + .++..|.+.
T Consensus 91 ~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~--------q------~~L~~l~~~ 156 (318)
T 3te6_A 91 LAGMDALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLLS--------E------KILQYFEKW 156 (318)
T ss_dssp CC--HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCC--------T------HHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhc--------c------hHHHHHHhc
Confidence 54321 122344566677664 345678999999999850 1 233333332
Q ss_pred HHHhcccccCccCCCcEEEEEecCCCCc----cccccccCCCcc-eEeeCCCCcHHHHHHHHHHHHhhcc----------
Q 002386 694 MDEYGEKRKSSCGIGPIAFVASAQSLEK----IPQSLTSSGRFD-FHVQLPAPAASERKAILEHEIQRRS---------- 758 (929)
Q Consensus 694 ld~~~~~~~~~~~~~~VivIattn~~~~----L~~~L~~~~Rf~-~~i~l~~Pd~~eR~~IL~~~l~~~~---------- 758 (929)
.. . .. .++.+|+++|..+. +++++++ ||. ..|.|++|+.++..+|++..+....
T Consensus 157 ~~-~--~~------s~~~vI~i~n~~d~~~~~L~~~v~S--R~~~~~i~F~pYt~~el~~Il~~Rl~~~~~~~f~~~~~~ 225 (318)
T 3te6_A 157 IS-S--KN------SKLSIICVGGHNVTIREQINIMPSL--KAHFTEIKLNKVDKNELQQMIITRLKSLLKPFHVKVNDK 225 (318)
T ss_dssp HH-C--SS------CCEEEEEECCSSCCCHHHHHTCHHH--HTTEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECTT
T ss_pred cc-c--cC------CcEEEEEEecCcccchhhcchhhhc--cCCceEEEeCCCCHHHHHHHHHHHHHhhhcccccccccc
Confidence 21 1 11 25899999988753 4566677 886 5899999999999999999887531
Q ss_pred -------------------------cccCHHHHHHHHhh---cCCCChhhHHHHHHHHHHHHhhccccCCcccccccccc
Q 002386 759 -------------------------LECSDEILLDVASK---CDGYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPT 810 (929)
Q Consensus 759 -------------------------~~~~d~~l~~LA~~---teG~s~~DL~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~ 810 (929)
..++++.++.+|+. ..| ..|-.-.+|++|+..+-.+....... ..+...
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ai~~~A~~vA~~~G-D~R~Al~ilr~A~~~ae~e~~~k~~~--~~~~~~ 302 (318)
T 3te6_A 226 KEMTIYNNIREGQNQKIPDNVIVINHKINNKITQLIAKNVANVSG-STEKAFKICEAAVEISKKDFVRKGGL--QKGKLV 302 (318)
T ss_dssp CCEEECCCC--------CTTEEEECEECCHHHHHHHHHHHHHHHC-SHHHHHHHHHHHHHHHHHHHHHHTTE--ETTEEC
T ss_pred ccccccccccccccccccccccccccccCHHHHHHHHHHHHhhCC-hHHHHHHHHHHHHHHHHHHHHhccCC--CCCcEE
Confidence 13578888888884 344 44444556788887776543321111 123355
Q ss_pred cccccccccc
Q 002386 811 LVRDDFSQAM 820 (929)
Q Consensus 811 lt~edf~~al 820 (929)
++.+.+.++.
T Consensus 303 i~~~~~~~~~ 312 (318)
T 3te6_A 303 VSQEMVPRYF 312 (318)
T ss_dssp CSEECCTHHH
T ss_pred eeHHHHHHHH
Confidence 6666655543
No 57
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.58 E-value=1e-14 Score=153.24 Aligned_cols=183 Identities=16% Similarity=0.186 Sum_probs=128.9
Q ss_pred CceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccccccCchhhHHHHHHHHHHHHHhcCCcEEEEcccccccc
Q 002386 590 PGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIIS 669 (929)
Q Consensus 590 ~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~ 669 (929)
+.+++|+||||||||++|+++++.+.... ..+.+++|.++......... ....+.+|||||+|.+..
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~----------~~~~~~vliiDe~~~~~~ 118 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACARANELE---RRSFYIPLGIHASISTALLE----------GLEQFDLICIDDVDAVAG 118 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHTT---CCEEEEEGGGGGGSCGGGGT----------TGGGSSEEEEETGGGGTT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcC---CeEEEEEHHHHHHHHHHHHH----------hccCCCEEEEeccccccC
Confidence 46899999999999999999999986542 56788888876644322111 114578999999999852
Q ss_pred CCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCCCcE-EEEEecCCCC---ccccccccCCCcc--eEeeCCCCcH
Q 002386 670 SSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPI-AFVASAQSLE---KIPQSLTSSGRFD--FHVQLPAPAA 743 (929)
Q Consensus 670 ~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V-ivIattn~~~---~L~~~L~~~~Rf~--~~i~l~~Pd~ 743 (929)
.. .....|...++...... .+ ++++++..+. .+.+.+.+ ||. ..+++++|+.
T Consensus 119 ---------~~----~~~~~l~~~l~~~~~~~-------~~~ii~~~~~~~~~~~~~~~~l~~--r~~~~~~i~l~~~~~ 176 (242)
T 3bos_A 119 ---------HP----LWEEAIFDLYNRVAEQK-------RGSLIVSASASPMEAGFVLPDLVS--RMHWGLTYQLQPMMD 176 (242)
T ss_dssp ---------CH----HHHHHHHHHHHHHHHHC-------SCEEEEEESSCTTTTTCCCHHHHH--HHHHSEEEECCCCCG
T ss_pred ---------CH----HHHHHHHHHHHHHHHcC-------CCeEEEEcCCCHHHHHHhhhhhhh--HhhcCceEEeCCCCH
Confidence 11 11233344444332221 23 4444444443 34577777 775 7899999999
Q ss_pred HHHHHHHHHHHhhcccccCHHHHHHHHhhcCCCChhhHHHHHHHHHHHHhhccccCCcccccccccccccccccccc
Q 002386 744 SERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAM 820 (929)
Q Consensus 744 ~eR~~IL~~~l~~~~~~~~d~~l~~LA~~teG~s~~DL~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~lt~edf~~al 820 (929)
+++.++++.++...+..++++.+..++..+.| +.+++..+++++...+..+ + ..++.+++.+++
T Consensus 177 ~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~~~~a~~~-----------~-~~It~~~v~~~l 240 (242)
T 3bos_A 177 DEKLAALQRRAAMRGLQLPEDVGRFLLNRMAR-DLRTLFDVLDRLDKASMVH-----------Q-RKLTIPFVKEML 240 (242)
T ss_dssp GGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHHHH-----------T-CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHHh-----------C-CCCcHHHHHHHh
Confidence 99999999999888888999999999998866 7888999999887766432 1 347777776654
No 58
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.58 E-value=1.3e-14 Score=163.76 Aligned_cols=228 Identities=18% Similarity=0.197 Sum_probs=149.8
Q ss_pred cccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCc---cceeeEEEEecc
Q 002386 554 SSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHK---DLVAHIVFVCCS 630 (929)
Q Consensus 554 ~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~---~~~~~~~~V~~s 630 (929)
..+.|.+..++++.+.+...+. ...+.+++|+||||||||++++++++.+.... .....+++++|.
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~-----------~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 87 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALR-----------GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNAR 87 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTS-----------SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETT
T ss_pred CCCCCHHHHHHHHHHHHHHHHc-----------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECC
Confidence 4677888888888774432211 23356799999999999999999999883220 012778899987
Q ss_pred ccccCc--h--------------h-hHHHHHHHHHHHHHh-cCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHH
Q 002386 631 RLSLEK--G--------------P-IIRQALSNFISEALD-HAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVD 692 (929)
Q Consensus 631 ~L~~~~--~--------------~-~~~~~l~~~f~~a~~-~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~ 692 (929)
...... . + .....+..++..... ..|.+|||||+|.+.... . ....|..
T Consensus 88 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~----------~---~~~~l~~ 154 (387)
T 2v1u_A 88 HRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRP----------G---GQDLLYR 154 (387)
T ss_dssp TSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHST----------T---HHHHHHH
T ss_pred cCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccC----------C---CChHHHh
Confidence 643211 0 0 022233344443332 347799999999986310 0 1223333
Q ss_pred HHHHhcccccCccCCCcEEEEEecCCC---CccccccccCCCcce-EeeCCCCcHHHHHHHHHHHHhh--cccccCHHHH
Q 002386 693 IMDEYGEKRKSSCGIGPIAFVASAQSL---EKIPQSLTSSGRFDF-HVQLPAPAASERKAILEHEIQR--RSLECSDEIL 766 (929)
Q Consensus 693 ~ld~~~~~~~~~~~~~~VivIattn~~---~~L~~~L~~~~Rf~~-~i~l~~Pd~~eR~~IL~~~l~~--~~~~~~d~~l 766 (929)
+++....... ..++.+|++++.. +.+++.+.+ ||.. .++|++|+.+++.+|++..+.. .+..++++.+
T Consensus 155 l~~~~~~~~~----~~~~~~I~~t~~~~~~~~l~~~l~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~ 228 (387)
T 2v1u_A 155 ITRINQELGD----RVWVSLVGITNSLGFVENLEPRVKS--SLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVV 228 (387)
T ss_dssp HHHGGGCC---------CEEEEECSCSTTSSSSCHHHHT--TTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHH
T ss_pred HhhchhhcCC----CceEEEEEEECCCchHhhhCHHHHh--cCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHH
Confidence 3333221100 1247888888877 678888888 8864 8999999999999999998875 3456778888
Q ss_pred HHHHhhcC---CCChhhHHHHHHHHHHHHhhccccCCccccccccccccccccccccccc
Q 002386 767 LDVASKCD---GYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEF 823 (929)
Q Consensus 767 ~~LA~~te---G~s~~DL~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~lt~edf~~al~~~ 823 (929)
..++..+. | .++.+..++++|...+..+ +...++.+++.+++...
T Consensus 229 ~~l~~~~~~~~G-~~r~~~~~l~~a~~~a~~~-----------~~~~i~~~~v~~a~~~~ 276 (387)
T 2v1u_A 229 PLCAALAAREHG-DARRALDLLRVAGEIAERR-----------REERVRREHVYSARAEI 276 (387)
T ss_dssp HHHHHHHHSSSC-CHHHHHHHHHHHHHHHHHT-----------TCSCBCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcc-CHHHHHHHHHHHHHHHHHc-----------CCCCcCHHHHHHHHHHH
Confidence 88888887 5 5777788888887665433 22457888887777654
No 59
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.58 E-value=7.4e-15 Score=169.76 Aligned_cols=199 Identities=17% Similarity=0.234 Sum_probs=139.0
Q ss_pred CceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccccccCchhhHHHHHHHHHHHHHhcCCcEEEEcccccccc
Q 002386 590 PGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIIS 669 (929)
Q Consensus 590 ~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~ 669 (929)
+.+++|+||||||||+||+++++.+.... ....+++++|..+.......+.......|.......+.+|||||+|.+.+
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~-~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~ 208 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNE-PDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIG 208 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHC-CSSCEEEEEHHHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSS
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhC-CCCeEEEeeHHHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccC
Confidence 45799999999999999999999884321 01568889988764433333322111233333333789999999999862
Q ss_pred CCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCCCcEEEEEecCCCCc---cccccccCCCcc--eEeeCCCCcHH
Q 002386 670 SSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEK---IPQSLTSSGRFD--FHVQLPAPAAS 744 (929)
Q Consensus 670 ~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~VivIattn~~~~---L~~~L~~~~Rf~--~~i~l~~Pd~~ 744 (929)
... ..+.|...++...... ..+++++.+.+.. +++.|.+ ||. ..+.+++|+.+
T Consensus 209 ---------~~~----~q~~l~~~l~~l~~~~-------~~iIitt~~~~~~l~~l~~~L~s--R~~~g~~i~l~~p~~e 266 (440)
T 2z4s_A 209 ---------KTG----VQTELFHTFNELHDSG-------KQIVICSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEE 266 (440)
T ss_dssp ---------CHH----HHHHHHHHHHHHHTTT-------CEEEEEESSCGGGCSSCCHHHHH--HHHSSBCCBCCCCCHH
T ss_pred ---------ChH----HHHHHHHHHHHHHHCC-------CeEEEEECCCHHHHHHHHHHHHh--hccCCeEEEeCCCCHH
Confidence 111 1223334444333221 2556666555554 7888988 885 78999999999
Q ss_pred HHHHHHHHHHhhcccccCHHHHHHHHhhcCCCChhhHHHHHHHHHHHHhhccccCCcccccccccccccccccccccccc
Q 002386 745 ERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFL 824 (929)
Q Consensus 745 eR~~IL~~~l~~~~~~~~d~~l~~LA~~teG~s~~DL~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~lt~edf~~al~~~~ 824 (929)
+|.+|++..+...++.++++.+..++..+.| +.+++..+++++...+... + ..++.+++.+++....
T Consensus 267 ~r~~iL~~~~~~~~~~i~~e~l~~la~~~~g-n~R~l~~~L~~~~~~a~~~-----------~-~~It~~~~~~~l~~~~ 333 (440)
T 2z4s_A 267 TRKSIARKMLEIEHGELPEEVLNFVAENVDD-NLRRLRGAIIKLLVYKETT-----------G-KEVDLKEAILLLKDFI 333 (440)
T ss_dssp HHHHHHHHHHHHHTCCCCTTHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHS-----------S-SCCCHHHHHHHTSTTT
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHh-----------C-CCCCHHHHHHHHHHHh
Confidence 9999999999887888899999999998876 8899999999987666432 1 2477777777777655
No 60
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.58 E-value=1.8e-14 Score=166.47 Aligned_cols=208 Identities=17% Similarity=0.202 Sum_probs=140.9
Q ss_pred cccccccchhHH---HHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEe
Q 002386 552 NVSSLSWMGTTA---SDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVC 628 (929)
Q Consensus 552 ~~~~l~g~~~~~---~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~ 628 (929)
++.++.|.+..+ ..+...+.. .. ..++||+||||||||++|+++|+.++ ..+..++
T Consensus 24 ~l~~ivGq~~~~~~~~~L~~~i~~--------------~~-~~~vLL~GppGtGKTtlAr~ia~~~~------~~f~~l~ 82 (447)
T 3pvs_A 24 NLAQYIGQQHLLAAGKPLPRAIEA--------------GH-LHSMILWGPPGTGKTTLAEVIARYAN------ADVERIS 82 (447)
T ss_dssp STTTCCSCHHHHSTTSHHHHHHHH--------------TC-CCEEEEECSTTSSHHHHHHHHHHHTT------CEEEEEE
T ss_pred CHHHhCCcHHHHhchHHHHHHHHc--------------CC-CcEEEEECCCCCcHHHHHHHHHHHhC------CCeEEEE
Confidence 356777887766 444443321 01 14699999999999999999999987 6778887
Q ss_pred ccccccCchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCCC
Q 002386 629 CSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIG 708 (929)
Q Consensus 629 ~s~L~~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~ 708 (929)
+... ....++..+...........+.+|||||+|.+.. .....|+..++..
T Consensus 83 a~~~---~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~---------------~~q~~LL~~le~~----------- 133 (447)
T 3pvs_A 83 AVTS---GVKEIREAIERARQNRNAGRRTILFVDEVHRFNK---------------SQQDAFLPHIEDG----------- 133 (447)
T ss_dssp TTTC---CHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC---------------------CCHHHHHTT-----------
T ss_pred eccC---CHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCH---------------HHHHHHHHHHhcC-----------
Confidence 7542 3444455554444444445788999999999852 1122355555541
Q ss_pred cEEEEEec--CCCCccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhh-------cccccCHHHHHHHHhhcCCCChh
Q 002386 709 PIAFVASA--QSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQR-------RSLECSDEILLDVASKCDGYDAY 779 (929)
Q Consensus 709 ~VivIatt--n~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~-------~~~~~~d~~l~~LA~~teG~s~~ 779 (929)
.+++|++| |....++++|.+ |+. ++.|++|+.+++.++++..+.. .+..++++.++.++..+.| +.+
T Consensus 134 ~v~lI~att~n~~~~l~~aL~s--R~~-v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~G-d~R 209 (447)
T 3pvs_A 134 TITFIGATTENPSFELNSALLS--RAR-VYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNG-DAR 209 (447)
T ss_dssp SCEEEEEESSCGGGSSCHHHHT--TEE-EEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCS-CHH
T ss_pred ceEEEecCCCCcccccCHHHhC--cee-EEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCC-CHH
Confidence 25555554 445578999999 887 7889999999999999999886 4566899999999999766 677
Q ss_pred hHHHHHHHHHHHHhhccccCCcccccccccccccccccccccc
Q 002386 780 DLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHE 822 (929)
Q Consensus 780 DL~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~lt~edf~~al~~ 822 (929)
++.++++++...+... ..+...|+.+++.+++..
T Consensus 210 ~lln~Le~a~~~a~~~---------~~~~~~It~e~v~~~l~~ 243 (447)
T 3pvs_A 210 RALNTLEMMADMAEVD---------DSGKRVLKPELLTEIAGE 243 (447)
T ss_dssp HHHHHHHHHHHHSCBC---------TTSCEECCHHHHHHHHTC
T ss_pred HHHHHHHHHHHhcccc---------cCCCCccCHHHHHHHHhh
Confidence 8888888886544211 001234666666665554
No 61
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.57 E-value=1.7e-14 Score=150.80 Aligned_cols=189 Identities=16% Similarity=0.250 Sum_probs=132.4
Q ss_pred ccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccce-----------
Q 002386 553 VSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLV----------- 621 (929)
Q Consensus 553 ~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~----------- 621 (929)
+.++.|.+..++.+.+.+.. ...+..++|+||+|+|||++++++++.+.......
T Consensus 22 ~~~~~g~~~~~~~l~~~l~~--------------~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (250)
T 1njg_A 22 FADVVGQEHVLTALANGLSL--------------GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCR 87 (250)
T ss_dssp GGGCCSCHHHHHHHHHHHHH--------------TCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHc--------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHH
Confidence 45677888888887775532 11234699999999999999999999886432100
Q ss_pred -------eeEEEEeccccccCchhhHHHHHHHHHHHHH----hcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHH
Q 002386 622 -------AHIVFVCCSRLSLEKGPIIRQALSNFISEAL----DHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFL 690 (929)
Q Consensus 622 -------~~~~~V~~s~L~~~~~~~~~~~l~~~f~~a~----~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L 690 (929)
..+..+++... .....+..++..+. ...+.+|||||+|.+.. ...+.|
T Consensus 88 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~---------------~~~~~l 146 (250)
T 1njg_A 88 EIEQGRFVDLIEIDAASR------TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSR---------------HSFNAL 146 (250)
T ss_dssp HHHTTCCSSEEEEETTCG------GGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCH---------------HHHHHH
T ss_pred HHhccCCcceEEecCccc------ccHHHHHHHHHHhhhchhcCCceEEEEECcccccH---------------HHHHHH
Confidence 11222322210 11222334444332 23578999999998741 334455
Q ss_pred HHHHHHhcccccCccCCCcEEEEEecCCCCccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhhcccccCHHHHHHHH
Q 002386 691 VDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVA 770 (929)
Q Consensus 691 ~~~ld~~~~~~~~~~~~~~VivIattn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~d~~l~~LA 770 (929)
...++... .++.+|++++....+++.+.+ |+ ..+++++|+.+++.++++.++...+..++++.+..++
T Consensus 147 ~~~l~~~~---------~~~~~i~~t~~~~~~~~~l~~--r~-~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~ 214 (250)
T 1njg_A 147 LKTLEEPP---------EHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLA 214 (250)
T ss_dssp HHHHHSCC---------TTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHH
T ss_pred HHHHhcCC---------CceEEEEEeCChHhCCHHHHH--Hh-hhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 55555421 147888888888888888888 65 5899999999999999999998878888999999999
Q ss_pred hhcCCCChhhHHHHHHHHH
Q 002386 771 SKCDGYDAYDLEILVDRTV 789 (929)
Q Consensus 771 ~~teG~s~~DL~~Lv~~A~ 789 (929)
..+.| .++.+..++++|.
T Consensus 215 ~~~~G-~~~~~~~~~~~~~ 232 (250)
T 1njg_A 215 RAAEG-SLRDALSLTDQAI 232 (250)
T ss_dssp HHHTT-CHHHHHHHHHHHH
T ss_pred HHcCC-CHHHHHHHHHHHH
Confidence 99977 7888888888774
No 62
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.55 E-value=7.8e-14 Score=172.20 Aligned_cols=213 Identities=15% Similarity=0.162 Sum_probs=149.6
Q ss_pred cccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccccc
Q 002386 554 SSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLS 633 (929)
Q Consensus 554 ~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~ 633 (929)
..+.|.+..++.+.+.+....... .....+.+++||+||||||||++|+++|+.+.... .++++++|+.+.
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~------~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~---~~~i~i~~s~~~ 561 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGL------KDPKRPIGSFIFLGPTGVGKTELARALAESIFGDE---ESMIRIDMSEYM 561 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTC------SCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCT---TCEEEEEGGGGC
T ss_pred CcCcChHHHHHHHHHHHHHHHccc------CCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCC---cceEEEechhcc
Confidence 357789999988888775433211 00012223799999999999999999999984222 678999999988
Q ss_pred cCchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccc--cCccCCCcEE
Q 002386 634 LEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKR--KSSCGIGPIA 711 (929)
Q Consensus 634 ~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~--~~~~~~~~Vi 711 (929)
...... ... +........++||||||+|.+. ..+.+.|+..|+...-.. .......+++
T Consensus 562 ~~~~~~-~~~---l~~~~~~~~~~vl~lDEi~~~~---------------~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~ 622 (758)
T 3pxi_A 562 EKHSTS-GGQ---LTEKVRRKPYSVVLLDAIEKAH---------------PDVFNILLQVLEDGRLTDSKGRTVDFRNTI 622 (758)
T ss_dssp SSCCCC-------CHHHHHHCSSSEEEEECGGGSC---------------HHHHHHHHHHHHHSBCC-----CCBCTTCE
T ss_pred cccccc-cch---hhHHHHhCCCeEEEEeCccccC---------------HHHHHHHHHHhccCeEEcCCCCEeccCCeE
Confidence 655443 111 2222333567899999999874 266777888888633111 1112234678
Q ss_pred EEEecCCCCc------------cccccccCCCcceEeeCCCCcHHHHHHHHHHHHhh---------cccccCHHHHHHHH
Q 002386 712 FVASAQSLEK------------IPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQR---------RSLECSDEILLDVA 770 (929)
Q Consensus 712 vIattn~~~~------------L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~---------~~~~~~d~~l~~LA 770 (929)
+|+|||.... +++.|.+ ||+..+.|++|+.+++.+|++.++.. ..+.++++.+..|+
T Consensus 623 iI~ttn~~~~~~~~~~~~~~~~f~p~l~~--Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~ 700 (758)
T 3pxi_A 623 LIMTSNVGASEKDKVMGELKRAFRPEFIN--RIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVA 700 (758)
T ss_dssp EEEEESSSTTCCHHHHHHHHHHSCHHHHT--TSSEEEECC--CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHH
T ss_pred EEEeCCCChhhHHHHHHHHHhhCCHHHHh--hCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEECHHHHHHHH
Confidence 9999996443 6788888 99889999999999999999987764 24568899999998
Q ss_pred hh--cCCCChhhHHHHHHHHHHHHhhcc
Q 002386 771 SK--CDGYDAYDLEILVDRTVHAAVGRY 796 (929)
Q Consensus 771 ~~--teG~s~~DL~~Lv~~A~~~a~~r~ 796 (929)
.. ...+..++|++++++++...+.+.
T Consensus 701 ~~~~~~~~~~R~L~~~i~~~v~~~l~~~ 728 (758)
T 3pxi_A 701 EEGVDLEYGARPLRRAIQKHVEDRLSEE 728 (758)
T ss_dssp GGGCCTTTTTTTHHHHHHHHTHHHHHHH
T ss_pred HhCCCCCCCChHHHHHHHHHHHHHHHHH
Confidence 74 456778999999999888777654
No 63
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.55 E-value=1.1e-13 Score=153.21 Aligned_cols=187 Identities=20% Similarity=0.289 Sum_probs=131.6
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccc
Q 002386 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSR 631 (929)
Q Consensus 552 ~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~ 631 (929)
+++++.|.+..++.+.+.+.. ...+..+|++||||||||++|+++|++++ ..+++++++.
T Consensus 24 ~~~~ivg~~~~~~~l~~~l~~--------------~~~~~~~L~~G~~G~GKT~la~~la~~l~------~~~~~i~~~~ 83 (324)
T 3u61_B 24 TIDECILPAFDKETFKSITSK--------------GKIPHIILHSPSPGTGKTTVAKALCHDVN------ADMMFVNGSD 83 (324)
T ss_dssp STTTSCCCHHHHHHHHHHHHT--------------TCCCSEEEECSSTTSSHHHHHHHHHHHTT------EEEEEEETTT
T ss_pred CHHHHhCcHHHHHHHHHHHHc--------------CCCCeEEEeeCcCCCCHHHHHHHHHHHhC------CCEEEEcccc
Confidence 456788888888777765431 23345688889999999999999999987 7899999876
Q ss_pred cccCchhhHHHHHHHHHHHHH-hcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCCCcE
Q 002386 632 LSLEKGPIIRQALSNFISEAL-DHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPI 710 (929)
Q Consensus 632 L~~~~~~~~~~~l~~~f~~a~-~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V 710 (929)
.. ...++..+........ ...+.+|||||+|.+.+ ....+.|...++.... ++
T Consensus 84 ~~---~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~--------------~~~~~~L~~~le~~~~---------~~ 137 (324)
T 3u61_B 84 CK---IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGL--------------AESQRHLRSFMEAYSS---------NC 137 (324)
T ss_dssp CC---HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGG--------------HHHHHHHHHHHHHHGG---------GC
T ss_pred cC---HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCc--------------HHHHHHHHHHHHhCCC---------Cc
Confidence 43 3333333332221110 11568999999999851 1344566677766542 36
Q ss_pred EEEEecCCCCccccccccCCCcceEeeCCCCcHHHHHHHHHHH-------HhhcccccCH-HHHHHHHhhcCCCChhhHH
Q 002386 711 AFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHE-------IQRRSLECSD-EILLDVASKCDGYDAYDLE 782 (929)
Q Consensus 711 ivIattn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~-------l~~~~~~~~d-~~l~~LA~~teG~s~~DL~ 782 (929)
.+|+++|....+++++.+ ||. .++|++|+.++|.+|++.+ +...++.+++ +.+..++..+.| +.+++.
T Consensus 138 ~iI~~~n~~~~l~~~l~s--R~~-~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g-d~R~a~ 213 (324)
T 3u61_B 138 SIIITANNIDGIIKPLQS--RCR-VITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFP-DFRKTI 213 (324)
T ss_dssp EEEEEESSGGGSCTTHHH--HSE-EEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCS-CTTHHH
T ss_pred EEEEEeCCccccCHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCC-CHHHHH
Confidence 888899999999999999 886 7999999999977665543 3345677887 889999998776 444455
Q ss_pred HHHHHH
Q 002386 783 ILVDRT 788 (929)
Q Consensus 783 ~Lv~~A 788 (929)
+.++.+
T Consensus 214 ~~L~~~ 219 (324)
T 3u61_B 214 GELDSY 219 (324)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555554
No 64
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.54 E-value=5.9e-14 Score=155.57 Aligned_cols=173 Identities=15% Similarity=0.236 Sum_probs=123.6
Q ss_pred CceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccccccCchhhHHHHHHHHHHHHHhcCCcEEEEcccccccc
Q 002386 590 PGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIIS 669 (929)
Q Consensus 590 ~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~ 669 (929)
+.+++|+||||||||++|+++++.+.... ..+++++|..+.....+.........|.... ..+.+|||||+|.+.+
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~vL~iDEi~~l~~ 112 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKKRG---YRVIYSSADDFAQAMVEHLKKGTINEFRNMY-KSVDLLLLDDVQFLSG 112 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHHTT---CCEEEEEHHHHHHHHHHHHHHTCHHHHHHHH-HTCSEEEEECGGGGTT
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHCC---CEEEEEEHHHHHHHHHHHHHcCcHHHHHHHh-cCCCEEEEcCcccccC
Confidence 46799999999999999999999984321 6788999987754433333322222333332 3488999999999852
Q ss_pred CCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCCCcEEEEEecCCCC---ccccccccCCCcc--eEeeCCCCcHH
Q 002386 670 SSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLE---KIPQSLTSSGRFD--FHVQLPAPAAS 744 (929)
Q Consensus 670 ~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~VivIattn~~~---~L~~~L~~~~Rf~--~~i~l~~Pd~~ 744 (929)
.......+.. .++...... ..+++++++.+. .+++.|.+ ||. ..+++++ +.+
T Consensus 113 ---------~~~~~~~l~~----~l~~~~~~~-------~~iii~~~~~~~~l~~l~~~L~s--R~~~~~~i~l~~-~~~ 169 (324)
T 1l8q_A 113 ---------KERTQIEFFH----IFNTLYLLE-------KQIILASDRHPQKLDGVSDRLVS--RFEGGILVEIEL-DNK 169 (324)
T ss_dssp ---------CHHHHHHHHH----HHHHHHHTT-------CEEEEEESSCGGGCTTSCHHHHH--HHHTSEEEECCC-CHH
T ss_pred ---------ChHHHHHHHH----HHHHHHHCC-------CeEEEEecCChHHHHHhhhHhhh--cccCceEEEeCC-CHH
Confidence 1111223333 333322211 256666666655 57899998 885 6899999 999
Q ss_pred HHHHHHHHHHhhcccccCHHHHHHHHhhcCCCChhhHHHHHHHHHHH
Q 002386 745 ERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHA 791 (929)
Q Consensus 745 eR~~IL~~~l~~~~~~~~d~~l~~LA~~teG~s~~DL~~Lv~~A~~~ 791 (929)
+|.+|++..+...++.++++.+..++..+ .+.+++..+++++...
T Consensus 170 e~~~il~~~~~~~~~~l~~~~l~~l~~~~--g~~r~l~~~l~~~~~~ 214 (324)
T 1l8q_A 170 TRFKIIKEKLKEFNLELRKEVIDYLLENT--KNVREIEGKIKLIKLK 214 (324)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHC--SSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHhC--CCHHHHHHHHHHHHHc
Confidence 99999999998888899999999999999 4778888888887654
No 65
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.53 E-value=4.6e-15 Score=164.54 Aligned_cols=88 Identities=40% Similarity=0.764 Sum_probs=83.7
Q ss_pred CCccCCCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHcCCceEEEeccccccccc
Q 002386 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYI 919 (929)
Q Consensus 840 ~~~w~dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~glnfIsVkg~ELl~kyI 919 (929)
.+.|++|+|++++++.|++.+.+|.++++.|.. +.+++.|+|||||||||||++|+++|++++.+|+.|++++++++|+
T Consensus 14 ~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~~ 92 (322)
T 3eie_A 14 NVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWM 92 (322)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCT-TCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHTTTG
T ss_pred CCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhc-CCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHhhccc
Confidence 589999999999999999999999999999987 5677899999999999999999999999999999999999999999
Q ss_pred ChhhHHHhh
Q 002386 920 GASEQAVRR 928 (929)
Q Consensus 920 G~SEq~VRd 928 (929)
|++|+.+|+
T Consensus 93 g~~~~~~~~ 101 (322)
T 3eie_A 93 GESEKLVKQ 101 (322)
T ss_dssp GGHHHHHHH
T ss_pred chHHHHHHH
Confidence 999999874
No 66
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.52 E-value=6.7e-14 Score=158.21 Aligned_cols=220 Identities=16% Similarity=0.195 Sum_probs=146.3
Q ss_pred cccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCc----cc-eeeEEEEe
Q 002386 554 SSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHK----DL-VAHIVFVC 628 (929)
Q Consensus 554 ~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~----~~-~~~~~~V~ 628 (929)
.++.|.+..++++.+.+..... ...+++++|+||||||||++|+++++.+.... .. ...+++++
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~-----------~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~ 88 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVK-----------NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVN 88 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHT-----------TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEE
T ss_pred CCCCChHHHHHHHHHHHHHHHc-----------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEE
Confidence 4677889999888887654432 23346899999999999999999999873220 01 26788999
Q ss_pred ccccccCchhh-------------------HHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHH-HH
Q 002386 629 CSRLSLEKGPI-------------------IRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIAL-TK 688 (929)
Q Consensus 629 ~s~L~~~~~~~-------------------~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l-~~ 688 (929)
|....+..... ....+..++..+....+ +|||||+|.+.... .. .. ..
T Consensus 89 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~-vlilDEi~~l~~~~-------~~----~~~l~ 156 (384)
T 2qby_B 89 CREVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRA-IIYLDEVDTLVKRR-------GG----DIVLY 156 (384)
T ss_dssp HHHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCE-EEEEETTHHHHHST-------TS----HHHHH
T ss_pred CccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCC-EEEEECHHHhccCC-------CC----ceeHH
Confidence 87654111111 12233334443333333 99999999986311 00 12 22
Q ss_pred HHHHHHHHhcccccCccCCCcEEEEEecCCC---CccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhh--cccccCH
Q 002386 689 FLVDIMDEYGEKRKSSCGIGPIAFVASAQSL---EKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQR--RSLECSD 763 (929)
Q Consensus 689 ~L~~~ld~~~~~~~~~~~~~~VivIattn~~---~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~--~~~~~~d 763 (929)
.|.+ .. .++.+|++++.. +.+++.+.+ ||...++|++|+.+++.+|++..+.. ....+++
T Consensus 157 ~l~~---~~----------~~~~iI~~t~~~~~~~~l~~~l~s--r~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~ 221 (384)
T 2qby_B 157 QLLR---SD----------ANISVIMISNDINVRDYMEPRVLS--SLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDD 221 (384)
T ss_dssp HHHT---SS----------SCEEEEEECSSTTTTTTSCHHHHH--TCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCS
T ss_pred HHhc---CC----------cceEEEEEECCCchHhhhCHHHHh--cCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCH
Confidence 2222 11 158889998876 678888888 88779999999999999999998864 2356788
Q ss_pred HHHHHHHhhcCC--CChhhHHHHHHHHHHHHhhccccCCcccccccccccccccccccccccc
Q 002386 764 EILLDVASKCDG--YDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFL 824 (929)
Q Consensus 764 ~~l~~LA~~teG--~s~~DL~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~lt~edf~~al~~~~ 824 (929)
+.+..++..+.+ ..++.+..++++|...+. +...++.+++..++....
T Consensus 222 ~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~-------------~~~~i~~~~v~~~~~~~~ 271 (384)
T 2qby_B 222 EILSYIAAISAKEHGDARKAVNLLFRAAQLAS-------------GGGIIRKEHVDKAIVDYE 271 (384)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT-------------SSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHHhc-------------CCCccCHHHHHHHHHHHh
Confidence 888889888872 245556667777765443 124577777777766543
No 67
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.51 E-value=7e-15 Score=165.33 Aligned_cols=88 Identities=40% Similarity=0.764 Sum_probs=80.8
Q ss_pred CCccCCCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHcCCceEEEeccccccccc
Q 002386 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYI 919 (929)
Q Consensus 840 ~~~w~dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~glnfIsVkg~ELl~kyI 919 (929)
.+.|++|+|++++++.|++.+.||+++++.|.. ..+++.|+|||||||||||++|+++|++++.+|+.+++++++++|+
T Consensus 47 ~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~~~~ 125 (355)
T 2qp9_X 47 NVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWM 125 (355)
T ss_dssp CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCS-SCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHSCC-
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhc-CCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhhhhc
Confidence 589999999999999999999999999999987 5678899999999999999999999999999999999999999999
Q ss_pred ChhhHHHhh
Q 002386 920 GASEQAVRR 928 (929)
Q Consensus 920 G~SEq~VRd 928 (929)
|++|+.+|+
T Consensus 126 g~~~~~~~~ 134 (355)
T 2qp9_X 126 GESEKLVKQ 134 (355)
T ss_dssp --CHHHHHH
T ss_pred chHHHHHHH
Confidence 999998874
No 68
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.51 E-value=1e-13 Score=154.91 Aligned_cols=194 Identities=22% Similarity=0.266 Sum_probs=134.5
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccc
Q 002386 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSR 631 (929)
Q Consensus 552 ~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~ 631 (929)
.+.++.|.+..++.+...+ . .....++||+||||||||++|+++|+.+.........+..++|++
T Consensus 35 ~~~~i~g~~~~~~~l~~~l----~-----------~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~ 99 (353)
T 1sxj_D 35 NLDEVTAQDHAVTVLKKTL----K-----------SANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASD 99 (353)
T ss_dssp STTTCCSCCTTHHHHHHHT----T-----------CTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSS
T ss_pred CHHHhhCCHHHHHHHHHHH----h-----------cCCCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEcccc
Confidence 3567788888887776532 1 111235999999999999999999999763211114577788876
Q ss_pred cccCchhhHHHHHHHHHHH-----------H-HhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcc
Q 002386 632 LSLEKGPIIRQALSNFISE-----------A-LDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGE 699 (929)
Q Consensus 632 L~~~~~~~~~~~l~~~f~~-----------a-~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~ 699 (929)
..+ .+.++..+...... . ....+.||||||+|.+.+ ...+.|...+++...
T Consensus 100 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~---------------~~~~~Ll~~le~~~~ 162 (353)
T 1sxj_D 100 ERG--ISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTA---------------DAQSALRRTMETYSG 162 (353)
T ss_dssp CCC--HHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCH---------------HHHHHHHHHHHHTTT
T ss_pred ccc--hHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCH---------------HHHHHHHHHHHhcCC
Confidence 532 22333322222111 0 012346999999999852 334556667766432
Q ss_pred cccCccCCCcEEEEEecCCCCccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhhcccccCHHHHHHHHhhcCCCChh
Q 002386 700 KRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAY 779 (929)
Q Consensus 700 ~~~~~~~~~~VivIattn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~d~~l~~LA~~teG~s~~ 779 (929)
...+|.+++.+..+.+.+++ |+. .+++++|+.++..++++..+...++.++++.+..++..+.| .++
T Consensus 163 ---------~~~~il~~~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G-~~r 229 (353)
T 1sxj_D 163 ---------VTRFCLICNYVTRIIDPLAS--QCS-KFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAG-DLR 229 (353)
T ss_dssp ---------TEEEEEEESCGGGSCHHHHH--HSE-EEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSS-CHH
T ss_pred ---------CceEEEEeCchhhCcchhhc--cCc-eEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-CHH
Confidence 35667778888889999998 887 88999999999999999988877888999999999999887 455
Q ss_pred hHHHHHHHHHH
Q 002386 780 DLEILVDRTVH 790 (929)
Q Consensus 780 DL~~Lv~~A~~ 790 (929)
.+..+++.+..
T Consensus 230 ~~~~~l~~~~~ 240 (353)
T 1sxj_D 230 RGITLLQSASK 240 (353)
T ss_dssp HHHHHHHHTHH
T ss_pred HHHHHHHHHHH
Confidence 56566665543
No 69
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.51 E-value=2.8e-14 Score=143.87 Aligned_cols=162 Identities=15% Similarity=0.244 Sum_probs=111.1
Q ss_pred ccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCcc----ceeeEEEEe
Q 002386 553 VSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKD----LVAHIVFVC 628 (929)
Q Consensus 553 ~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~----~~~~~~~V~ 628 (929)
+.++.|.+..++++.+.+.. ..+.++||+||||||||++|+++++.+..... ....+++++
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~---------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (195)
T 1jbk_A 21 LDPVIGRDEEIRRTIQVLQR---------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALD 85 (195)
T ss_dssp SCCCCSCHHHHHHHHHHHTS---------------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEEC
T ss_pred ccccccchHHHHHHHHHHhc---------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEee
Confidence 45677888888887764311 23467999999999999999999999843110 126788888
Q ss_pred ccccc--cCchhhHHHHHHHHHHHHHh-cCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCcc
Q 002386 629 CSRLS--LEKGPIIRQALSNFISEALD-HAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSC 705 (929)
Q Consensus 629 ~s~L~--~~~~~~~~~~l~~~f~~a~~-~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~ 705 (929)
|..+. ....+.....+..++..+.. ..+.+|||||+|.+.+...... .. .+...|...++.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~---~~----~~~~~l~~~~~~--------- 149 (195)
T 1jbk_A 86 MGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADG---AM----DAGNMLKPALAR--------- 149 (195)
T ss_dssp HHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT---------CC----CCHHHHHHHHHT---------
T ss_pred HHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccc---hH----HHHHHHHHhhcc---------
Confidence 88765 34456666777777776643 4578999999999974321111 11 123334443332
Q ss_pred CCCcEEEEEecCCCC-----ccccccccCCCcceEeeCCCCcHHHHHHHH
Q 002386 706 GIGPIAFVASAQSLE-----KIPQSLTSSGRFDFHVQLPAPAASERKAIL 750 (929)
Q Consensus 706 ~~~~VivIattn~~~-----~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL 750 (929)
+++.+|++++... .+++++.+ ||. .+++++|+.++|.+|+
T Consensus 150 --~~~~~i~~~~~~~~~~~~~~~~~l~~--r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 150 --GELHCVGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp --TSCCEEEEECHHHHHHHTTTCHHHHT--TEE-EEECCCCCHHHHHTTC
T ss_pred --CCeEEEEeCCHHHHHHHHhcCHHHHH--Hhc-eeecCCCCHHHHHHHh
Confidence 1367788877765 67899998 998 6999999999998875
No 70
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.50 E-value=1.9e-13 Score=154.81 Aligned_cols=220 Identities=19% Similarity=0.189 Sum_probs=136.9
Q ss_pred CCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEecccccc-Cchhh-HHHHHHHHHHHHH----hcCCcEEEEc
Q 002386 589 LPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSL-EKGPI-IRQALSNFISEAL----DHAPSIVIFD 662 (929)
Q Consensus 589 ~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~~-~~~~~-~~~~l~~~f~~a~----~~~PsVL~LD 662 (929)
.+.++||+||||||||++|+++|+.++ .+++.++|..+.. ...+. .+..+..++..+. ...+++||||
T Consensus 71 ~~~~ill~Gp~GtGKT~la~~la~~l~------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iD 144 (376)
T 1um8_A 71 SKSNILLIGPTGSGKTLMAQTLAKHLD------IPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFID 144 (376)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTT------CCEEEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEE
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHhC------CCEEEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEc
Confidence 456799999999999999999999986 7788899988752 22222 2344555554322 2367899999
Q ss_pred cccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcc----cccC--------ccCCCcEEEEEecCCC-----------
Q 002386 663 NLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGE----KRKS--------SCGIGPIAFVASAQSL----------- 719 (929)
Q Consensus 663 EiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~----~~~~--------~~~~~~VivIattn~~----------- 719 (929)
|+|.+...+...... .......+.+.|+..|++..- .... .....++++|+++|..
T Consensus 145 Ei~~l~~~~~~~~~~-~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~ 223 (376)
T 1um8_A 145 EIDKISRLSENRSIT-RDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTT 223 (376)
T ss_dssp TGGGC---------------CHHHHHHHHHHHHCCEEC---------------CEECTTCEEEEEECCTTHHHHTTTSCS
T ss_pred CHHHHhhhcCCCcee-cccchHHHHHHHHHHhhccceecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhc
Confidence 999997532111100 011112367778888874310 0000 0011246777776620
Q ss_pred ------------------------------CccccccccCCCcceEeeCCCCcHHHHHHHHHH----HHh---------h
Q 002386 720 ------------------------------EKIPQSLTSSGRFDFHVQLPAPAASERKAILEH----EIQ---------R 756 (929)
Q Consensus 720 ------------------------------~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~----~l~---------~ 756 (929)
..+.+.|.+ ||+..+.|++++.++..+|+.. ++. .
T Consensus 224 ~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~l~~--R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~ 301 (376)
T 1um8_A 224 QNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPELIG--RLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDE 301 (376)
T ss_dssp SCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTTCCHHHHT--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTT
T ss_pred ccccCCCchhhhccchhHHHhhcCHHHHhhcCCChHHhc--CCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcC
Confidence 124456666 8888999999999999999862 211 1
Q ss_pred cccccCHHHHHHHHhhcC--CCChhhHHHHHHHHHHHHhhccccCCcccccccccccccccccccccc
Q 002386 757 RSLECSDEILLDVASKCD--GYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHE 822 (929)
Q Consensus 757 ~~~~~~d~~l~~LA~~te--G~s~~DL~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~lt~edf~~al~~ 822 (929)
..+.++++.+..++.... .+..+.|..++++++..++.+.... ......|+.+++....+.
T Consensus 302 ~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~le~~~~~~~~~~~~~-----~~~~~~i~~~~v~~~~~~ 364 (376)
T 1um8_A 302 VDLIFEEEAIKEIAQLALERKTGARGLRAIIEDFCLDIMFDLPKL-----KGSEVRITKDCVLKQAEP 364 (376)
T ss_dssp CEEEECHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHHHHHTGGGG-----TTSEEEECHHHHTTSSCC
T ss_pred ceEEECHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHhhccCC-----CCCEEEEeHHHhcCCCCc
Confidence 245688999999988854 4678999999999998887764311 112245777777765543
No 71
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.50 E-value=3.3e-13 Score=154.28 Aligned_cols=134 Identities=20% Similarity=0.269 Sum_probs=90.9
Q ss_pred cEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccc-CccCCCcEEEEEec-----CCCCccccccccCC
Q 002386 657 SIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRK-SSCGIGPIAFVASA-----QSLEKIPQSLTSSG 730 (929)
Q Consensus 657 sVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~-~~~~~~~VivIatt-----n~~~~L~~~L~~~~ 730 (929)
.++++||+|.+.... ++....-....+.+.|+..++....... ......+|+||+|. ++.+ +-|.|++
T Consensus 252 ~il~~DEidki~~~~---~~~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~~~d-lipel~~-- 325 (444)
T 1g41_A 252 GIVFIDEIDKICKKG---EYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSD-LIPELQG-- 325 (444)
T ss_dssp CEEEEETGGGGSCCS---SCSSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCGGG-SCHHHHT--
T ss_pred CeeeHHHHHHHhhcc---CCCCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEeccccccCChhh-cchHHhc--
Confidence 489999999997421 1122222334577888888886321100 01122368899887 4444 5567888
Q ss_pred CcceEeeCCCCcHHHHHHHHH---H--------HH--hhcccccCHHHHHHHHh-------hcCCCChhhHHHHHHHHHH
Q 002386 731 RFDFHVQLPAPAASERKAILE---H--------EI--QRRSLECSDEILLDVAS-------KCDGYDAYDLEILVDRTVH 790 (929)
Q Consensus 731 Rf~~~i~l~~Pd~~eR~~IL~---~--------~l--~~~~~~~~d~~l~~LA~-------~teG~s~~DL~~Lv~~A~~ 790 (929)
||..++.|+.++.++..+|+. . .+ ....+.++++.+..++. .|+...++.|+.++++++.
T Consensus 326 R~~i~i~l~~lt~~e~~~Il~~~~~~l~~q~~~~~~~~~~~l~~~~~al~~i~~~a~~~~~~t~~~GaR~L~~~ie~~~~ 405 (444)
T 1g41_A 326 RLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMD 405 (444)
T ss_dssp TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHH
T ss_pred ccceeeeCCCCCHHHHHHHHHHHHHhHHHHHHHHhcccCceEEECHHHHHHHHHHHHHhccCCccCCchHHHHHHHHHHH
Confidence 999999999999999999993 1 11 12345688988888877 3567788999998888887
Q ss_pred HHhhcc
Q 002386 791 AAVGRY 796 (929)
Q Consensus 791 ~a~~r~ 796 (929)
....+.
T Consensus 406 ~~~~~~ 411 (444)
T 1g41_A 406 KISFSA 411 (444)
T ss_dssp HHHHHG
T ss_pred HHHhhc
Confidence 766654
No 72
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.49 E-value=4.4e-13 Score=151.49 Aligned_cols=224 Identities=14% Similarity=0.094 Sum_probs=147.5
Q ss_pred cccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCc--eEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccc
Q 002386 554 SSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPG--HILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSR 631 (929)
Q Consensus 554 ~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~--~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~ 631 (929)
..+.|.+..++.+.+.+..... ...+. +++|+||+|||||++++++++.+.... ...+++++|..
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~-----------~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~--~~~~~~i~~~~ 83 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLR-----------NPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKT--TARFVYINGFI 83 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHH-----------STTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSC--CCEEEEEETTT
T ss_pred CCCCChHHHHHHHHHHHHHHHc-----------CCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhc--CeeEEEEeCcc
Confidence 4677889888888887654322 12223 799999999999999999999985331 15688899876
Q ss_pred cccCc-----------------hhhHHHHHHHHHHHHH-hcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHH
Q 002386 632 LSLEK-----------------GPIIRQALSNFISEAL-DHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDI 693 (929)
Q Consensus 632 L~~~~-----------------~~~~~~~l~~~f~~a~-~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ 693 (929)
..... .......+..+..... ...|.+|||||+|.+- ......|...
T Consensus 84 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~---------------~~~~~~L~~~ 148 (389)
T 1fnn_A 84 YRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLA---------------PDILSTFIRL 148 (389)
T ss_dssp CCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSC---------------HHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccc---------------hHHHHHHHHH
Confidence 43210 0011111222222221 2458899999999872 1445555555
Q ss_pred HHHhcccccCccCCCcEEEEEecCCC---CccccccccCCCcce-EeeCCCCcHHHHHHHHHHHHhhc--ccccCHHHHH
Q 002386 694 MDEYGEKRKSSCGIGPIAFVASAQSL---EKIPQSLTSSGRFDF-HVQLPAPAASERKAILEHEIQRR--SLECSDEILL 767 (929)
Q Consensus 694 ld~~~~~~~~~~~~~~VivIattn~~---~~L~~~L~~~~Rf~~-~i~l~~Pd~~eR~~IL~~~l~~~--~~~~~d~~l~ 767 (929)
++...... ..++.+|++++.. +.+++.+.+ ||.. .++|++++.++..++++..+... ...++++.+.
T Consensus 149 ~~~~~~~~-----~~~~~iI~~~~~~~~~~~l~~~~~~--r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 221 (389)
T 1fnn_A 149 GQEADKLG-----AFRIALVIVGHNDAVLNNLDPSTRG--IMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQ 221 (389)
T ss_dssp TTCHHHHS-----SCCEEEEEEESSTHHHHTSCHHHHH--HHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHH
T ss_pred HHhCCCCC-----cCCEEEEEEECCchHHHHhCHHhhh--cCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHH
Confidence 54432200 0147888888876 557777777 7774 79999999999999999887641 2357888999
Q ss_pred HHHhhcC--------CCChhhHHHHHHHHHHHHhhccccCCccccccccccccccccccccccc
Q 002386 768 DVASKCD--------GYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEF 823 (929)
Q Consensus 768 ~LA~~te--------G~s~~DL~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~lt~edf~~al~~~ 823 (929)
.++..+. +..++.+..+++.|...+..+ +...++.+++..++...
T Consensus 222 ~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~-----------~~~~i~~~~v~~~~~~~ 274 (389)
T 1fnn_A 222 MIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQN-----------GRKHIAPEDVRKSSKEV 274 (389)
T ss_dssp HHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHT-----------TCSSCCHHHHHHHHHHH
T ss_pred HHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHHh-----------CCCCcCHHHHHHHHHHH
Confidence 9999984 235677888888887666543 22346666766665543
No 73
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.49 E-value=4.4e-13 Score=165.56 Aligned_cols=211 Identities=14% Similarity=0.159 Sum_probs=147.8
Q ss_pred ccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEecccccc
Q 002386 555 SLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSL 634 (929)
Q Consensus 555 ~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~~ 634 (929)
.+.|.+..++.+.+.+....... .....+.+++||+||||||||++|+++|+.++ .+++.++|+++..
T Consensus 459 ~v~g~~~~~~~l~~~i~~~~~g~------~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~------~~~~~i~~s~~~~ 526 (758)
T 1r6b_X 459 LVFGQDKAIEALTEAIKMARAGL------GHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG------IELLRFDMSEYME 526 (758)
T ss_dssp TSCSCHHHHHHHHHHHHHHHTTC------SCTTSCSEEEEEECSTTSSHHHHHHHHHHHHT------CEEEEEEGGGCSS
T ss_pred hccCHHHHHHHHHHHHHHHhccc------CCCCCCceEEEEECCCCCcHHHHHHHHHHHhc------CCEEEEechhhcc
Confidence 46778888888877664322100 00012335799999999999999999999986 7889999987753
Q ss_pred C------------chhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccc-
Q 002386 635 E------------KGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKR- 701 (929)
Q Consensus 635 ~------------~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~- 701 (929)
. +.+.... ..+........++||||||+|.+.+ .+.+.|+..|+...-..
T Consensus 527 ~~~~~~l~g~~~g~~g~~~~--~~l~~~~~~~~~~vl~lDEi~~~~~---------------~~~~~Ll~~le~~~~~~~ 589 (758)
T 1r6b_X 527 RHTVSRLIGAPPGYVGFDQG--GLLTDAVIKHPHAVLLLDEIEKAHP---------------DVFNILLQVMDNGTLTDN 589 (758)
T ss_dssp SSCCSSSCCCCSCSHHHHHT--THHHHHHHHCSSEEEEEETGGGSCH---------------HHHHHHHHHHHHSEEEET
T ss_pred hhhHhhhcCCCCCCcCcccc--chHHHHHHhCCCcEEEEeCccccCH---------------HHHHHHHHHhcCcEEEcC
Confidence 2 2221111 1122233335578999999998752 57778888888643111
Q ss_pred -cCccCCCcEEEEEecCCCC-------------------------ccccccccCCCcceEeeCCCCcHHHHHHHHHHHHh
Q 002386 702 -KSSCGIGPIAFVASAQSLE-------------------------KIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQ 755 (929)
Q Consensus 702 -~~~~~~~~VivIattn~~~-------------------------~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~ 755 (929)
.......++++|+|+|... .+++.|.+ ||+..+.|++|+.+++.+|++.++.
T Consensus 590 ~g~~~~~~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~l~~~~~~~i~~~~l~ 667 (758)
T 1r6b_X 590 NGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIV 667 (758)
T ss_dssp TTEEEECTTEEEEEEECSSCC-----------------CHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHH
T ss_pred CCCEEecCCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHh--hCCcceeeCCCCHHHHHHHHHHHHH
Confidence 0111123688999999743 56788888 9998999999999999999998876
Q ss_pred hc---------ccccCHHHHHHHHhhc--CCCChhhHHHHHHHHHHHHhhcc
Q 002386 756 RR---------SLECSDEILLDVASKC--DGYDAYDLEILVDRTVHAAVGRY 796 (929)
Q Consensus 756 ~~---------~~~~~d~~l~~LA~~t--eG~s~~DL~~Lv~~A~~~a~~r~ 796 (929)
+. .+.++++.+..++... ..+..+++..++++++...+.+.
T Consensus 668 ~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~l~~~i~~~~~~~l~~~ 719 (758)
T 1r6b_X 668 ELQVQLDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKPLANE 719 (758)
T ss_dssp HHHHHHHHTTEEEEECHHHHHHHHHHHCBTTTBTTTHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHCCcEEEeCHHHHHHHHHhCCCcCCCchHHHHHHHHHHHHHHHHH
Confidence 32 3568899999998765 45678999999999988766553
No 74
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.48 E-value=9.1e-13 Score=146.81 Aligned_cols=217 Identities=17% Similarity=0.224 Sum_probs=142.9
Q ss_pred ccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEecccc
Q 002386 553 VSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRL 632 (929)
Q Consensus 553 ~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L 632 (929)
+....|.+..++.+...+..-.. ...++.+++|+||||+||||+++++|+.++ ..+...++..+
T Consensus 24 l~~~~g~~~~~~~l~~~i~~~~~----------~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~------~~~~~~sg~~~ 87 (334)
T 1in4_A 24 LDEFIGQENVKKKLSLALEAAKM----------RGEVLDHVLLAGPPGLGKTTLAHIIASELQ------TNIHVTSGPVL 87 (334)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHH----------HTCCCCCEEEESSTTSSHHHHHHHHHHHHT------CCEEEEETTTC
T ss_pred HHHccCcHHHHHHHHHHHHHHHh----------cCCCCCeEEEECCCCCcHHHHHHHHHHHhC------CCEEEEechHh
Confidence 44555666666665543322100 012346799999999999999999999987 44444444333
Q ss_pred ccCchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccc-----cc--C--
Q 002386 633 SLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEK-----RK--S-- 703 (929)
Q Consensus 633 ~~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~-----~~--~-- 703 (929)
.. ...+ ..++.. ...+.|+|+||++.+.+ ...+.|...++..... .. .
T Consensus 88 ~~--~~~l----~~~~~~--~~~~~v~~iDE~~~l~~---------------~~~e~L~~~~~~~~~~i~~~~~~~~~~i 144 (334)
T 1in4_A 88 VK--QGDM----AAILTS--LERGDVLFIDEIHRLNK---------------AVEELLYSAIEDFQIDIMIGKGPSAKSI 144 (334)
T ss_dssp CS--HHHH----HHHHHH--CCTTCEEEEETGGGCCH---------------HHHHHHHHHHHTSCCCC-----------
T ss_pred cC--HHHH----HHHHHH--ccCCCEEEEcchhhcCH---------------HHHHHHHHHHHhcccceeeccCcccccc
Confidence 21 1222 222221 23567999999998852 2233333344332100 00 0
Q ss_pred ccCCCcEEEEEecCCCCccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhhcccccCHHHHHHHHhhcCCCChhhHHH
Q 002386 704 SCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEI 783 (929)
Q Consensus 704 ~~~~~~VivIattn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~d~~l~~LA~~teG~s~~DL~~ 783 (929)
......+.++++++.+..+++.+++ ||...+.|++|+.+++.+|++...+..+..++++.+..++..+.| +++++..
T Consensus 145 ~~~l~~~~li~at~~~~~Ls~~l~s--R~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G-~~R~a~~ 221 (334)
T 1in4_A 145 RIDIQPFTLVGATTRSGLLSSPLRS--RFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRG-TPRIAIR 221 (334)
T ss_dssp ----CCCEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTT-CHHHHHH
T ss_pred cccCCCeEEEEecCCcccCCHHHHH--hcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCC-ChHHHHH
Confidence 0011246777888999999999999 998889999999999999999988877888999999999999887 5688888
Q ss_pred HHHHHHHHHhhccccCCcccccccccccccccccccccc
Q 002386 784 LVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHE 822 (929)
Q Consensus 784 Lv~~A~~~a~~r~~~~~~~~~~~~~~~lt~edf~~al~~ 822 (929)
+++++...|..+ +...++.+++.+++..
T Consensus 222 ll~~~~~~a~~~-----------~~~~It~~~v~~al~~ 249 (334)
T 1in4_A 222 LTKRVRDMLTVV-----------KADRINTDIVLKTMEV 249 (334)
T ss_dssp HHHHHHHHHHHH-----------TCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHc-----------CCCCcCHHHHHHHHHH
Confidence 898887666543 2235677777666654
No 75
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.47 E-value=7e-14 Score=162.92 Aligned_cols=190 Identities=16% Similarity=0.219 Sum_probs=131.1
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCcc----ceeeEEEE
Q 002386 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKD----LVAHIVFV 627 (929)
Q Consensus 552 ~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~----~~~~~~~V 627 (929)
+++.+.|.+..++.+.+.+.. ....++||+||||||||++|+++|+.+..... ....++.+
T Consensus 178 ~ld~iiGr~~~i~~l~~~l~r---------------~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l 242 (468)
T 3pxg_A 178 SLDPVIGRSKEIQRVIEVLSR---------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTL 242 (468)
T ss_dssp CSCCCCCCHHHHHHHHHHHHC---------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC
T ss_pred CCCCccCcHHHHHHHHHHHhc---------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEe
Confidence 456788999888887774421 22367999999999999999999999843210 12567778
Q ss_pred eccccccCchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCC
Q 002386 628 CCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGI 707 (929)
Q Consensus 628 ~~s~L~~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~ 707 (929)
+|. +.+.+..+..+..+|..+....|.||||| .. . ...+.|...++ .
T Consensus 243 ~~~---~~~~g~~e~~~~~~~~~~~~~~~~iLfiD-----~~--~------------~a~~~L~~~L~-----------~ 289 (468)
T 3pxg_A 243 DMG---TKYRGEFEDRLKKVMDEIRQAGNIILFID-----AA--I------------DASNILKPSLA-----------R 289 (468)
T ss_dssp -------------CTTHHHHHHHHHTCCCCEEEEC-----C----------------------CCCTT-----------S
T ss_pred eCC---ccccchHHHHHHHHHHHHHhcCCeEEEEe-----Cc--h------------hHHHHHHHhhc-----------C
Confidence 877 44555566677888888888889999999 10 0 11222322222 1
Q ss_pred CcEEEEEecCCCC-----ccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhh----cccccCHHHHHHHHhhcCCCC-
Q 002386 708 GPIAFVASAQSLE-----KIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQR----RSLECSDEILLDVASKCDGYD- 777 (929)
Q Consensus 708 ~~VivIattn~~~-----~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~----~~~~~~d~~l~~LA~~teG~s- 777 (929)
+.+.+|++||..+ .++++|.+ ||. .+.|++|+.+++.+||+.++.. .+..++++.+..++..+.+|.
T Consensus 290 g~v~vI~at~~~e~~~~~~~~~al~~--Rf~-~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~ 366 (468)
T 3pxg_A 290 GELQCIGATTLDEYRKYIEKDAALER--RFQ-PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYIS 366 (468)
T ss_dssp SSCEEEEECCTTTTHHHHTTCSHHHH--SEE-EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSC
T ss_pred CCEEEEecCCHHHHHHHhhcCHHHHH--hCc-cceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhc
Confidence 2488999999877 68999999 998 6999999999999999987765 567789999988888776555
Q ss_pred ----hhhHHHHHHHHHHHH
Q 002386 778 ----AYDLEILVDRTVHAA 792 (929)
Q Consensus 778 ----~~DL~~Lv~~A~~~a 792 (929)
+.....+++.|...+
T Consensus 367 ~~~lp~~ai~ll~~a~~~~ 385 (468)
T 3pxg_A 367 DRFLPDKAIDLIDEAGSKV 385 (468)
T ss_dssp CSCTTHHHHHHHHHHHHHH
T ss_pred cCcCCcHHHHHHHHHHHHH
Confidence 446667777776444
No 76
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.47 E-value=6.8e-13 Score=147.36 Aligned_cols=215 Identities=14% Similarity=0.141 Sum_probs=138.6
Q ss_pred cccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccc--
Q 002386 554 SSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSR-- 631 (929)
Q Consensus 554 ~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~-- 631 (929)
..+.|.+..++.+...+.. ++++||+||||||||++|+++|+.++ ..+..++|..
T Consensus 27 ~~i~g~~~~~~~l~~~l~~-----------------~~~vll~G~pGtGKT~la~~la~~~~------~~~~~i~~~~~~ 83 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICT-----------------GGHILLEGVPGLAKTLSVNTLAKTMD------LDFHRIQFTPDL 83 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHH-----------------TCCEEEESCCCHHHHHHHHHHHHHTT------CCEEEEECCTTC
T ss_pred cceeCcHHHHHHHHHHHHc-----------------CCeEEEECCCCCcHHHHHHHHHHHhC------CCeEEEecCCCC
Confidence 3556777777666553321 25799999999999999999999987 5667777742
Q ss_pred ----cccCchhhHHHHHHHHHHHHHhcC---CcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccC-
Q 002386 632 ----LSLEKGPIIRQALSNFISEALDHA---PSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKS- 703 (929)
Q Consensus 632 ----L~~~~~~~~~~~l~~~f~~a~~~~---PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~- 703 (929)
+.+....... ...+ ..... ..+|||||+|.+.+ .....|...|++..-...+
T Consensus 84 ~~~~l~g~~~~~~~---~~~~--~~~~g~l~~~vl~iDEi~~~~~---------------~~~~~Ll~~l~~~~~~~~g~ 143 (331)
T 2r44_A 84 LPSDLIGTMIYNQH---KGNF--EVKKGPVFSNFILADEVNRSPA---------------KVQSALLECMQEKQVTIGDT 143 (331)
T ss_dssp CHHHHHEEEEEETT---TTEE--EEEECTTCSSEEEEETGGGSCH---------------HHHHHHHHHHHHSEEEETTE
T ss_pred ChhhcCCceeecCC---CCce--EeccCcccccEEEEEccccCCH---------------HHHHHHHHHHhcCceeeCCE
Confidence 1111100000 0000 00012 26999999998742 4556666777653211000
Q ss_pred -ccCCCcEEEEEecCCCC-----ccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhhc--------------------
Q 002386 704 -SCGIGPIAFVASAQSLE-----KIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRR-------------------- 757 (929)
Q Consensus 704 -~~~~~~VivIattn~~~-----~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~-------------------- 757 (929)
.....++++++|+|+.+ .++++|.+ ||...+.+++|+.+++.+|++..+...
T Consensus 144 ~~~~~~~~~viat~np~~~~~~~~l~~~l~~--Rf~~~i~i~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~ 221 (331)
T 2r44_A 144 TYPLDNPFLVLATQNPVEQEGTYPLPEAQVD--RFMMKIHLTYLDKESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRNE 221 (331)
T ss_dssp EEECCSSCEEEEEECTTCCSCCCCCCHHHHT--TSSEEEECCCCCHHHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHHH
T ss_pred EEECCCCEEEEEecCCCcccCcccCCHHHHh--heeEEEEcCCCCHHHHHHHHHhccccCcchhccccCCHHHHHHHHHH
Confidence 00112478888888654 38899999 999889999999999999999876542
Q ss_pred --ccccCHHHHHHHHhhc-------------------CCCChhhHHHHHHHHHHHHhhccccCCcccccccccccccccc
Q 002386 758 --SLECSDEILLDVASKC-------------------DGYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDF 816 (929)
Q Consensus 758 --~~~~~d~~l~~LA~~t-------------------eG~s~~DL~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~lt~edf 816 (929)
++.++++.++.++... .|.+++.+..+++.|...|..+ +...++.+|+
T Consensus 222 ~~~v~~~~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~-----------g~~~v~~~dv 290 (331)
T 2r44_A 222 INKVTISESLEKYIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFN-----------NRDYVLPEDI 290 (331)
T ss_dssp HHTCBCCHHHHHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHT-----------TCSBCCHHHH
T ss_pred hccCCCCHHHHHHHHHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHHc-----------CCCCCCHHHH
Confidence 4556777766665432 2557888888888776555443 3345888888
Q ss_pred cccccccc
Q 002386 817 SQAMHEFL 824 (929)
Q Consensus 817 ~~al~~~~ 824 (929)
.+++....
T Consensus 291 ~~~~~~vl 298 (331)
T 2r44_A 291 KEVAYDIL 298 (331)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 88776543
No 77
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.47 E-value=6.1e-13 Score=146.68 Aligned_cols=190 Identities=19% Similarity=0.241 Sum_probs=133.9
Q ss_pred ccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEecccc
Q 002386 553 VSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRL 632 (929)
Q Consensus 553 ~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L 632 (929)
+.++.|.+..++.+.+.+.. . ...++||+||||+|||++|+++++.+.... ....++.++|++.
T Consensus 24 ~~~~~g~~~~~~~l~~~l~~--------------~-~~~~~ll~G~~G~GKT~la~~l~~~l~~~~-~~~~~~~~~~~~~ 87 (327)
T 1iqp_A 24 LDDIVGQEHIVKRLKHYVKT--------------G-SMPHLLFAGPPGVGKTTAALALARELFGEN-WRHNFLELNASDE 87 (327)
T ss_dssp TTTCCSCHHHHHHHHHHHHH--------------T-CCCEEEEESCTTSSHHHHHHHHHHHHHGGG-HHHHEEEEETTCH
T ss_pred HHHhhCCHHHHHHHHHHHHc--------------C-CCCeEEEECcCCCCHHHHHHHHHHHhcCCc-ccCceEEeecccc
Confidence 55778888888877764432 1 123599999999999999999999975321 1245777787654
Q ss_pred ccCchhhHHHHHHHHHHHH-H-hcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCCCcE
Q 002386 633 SLEKGPIIRQALSNFISEA-L-DHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPI 710 (929)
Q Consensus 633 ~~~~~~~~~~~l~~~f~~a-~-~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V 710 (929)
.+ ...++..+....... . ...+.++||||+|.+.+ ...+.|...++.... .+
T Consensus 88 ~~--~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~---------------~~~~~L~~~le~~~~---------~~ 141 (327)
T 1iqp_A 88 RG--INVIREKVKEFARTKPIGGASFKIIFLDEADALTQ---------------DAQQALRRTMEMFSS---------NV 141 (327)
T ss_dssp HH--HHTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCH---------------HHHHHHHHHHHHTTT---------TE
T ss_pred Cc--hHHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCH---------------HHHHHHHHHHHhcCC---------CC
Confidence 32 122222233222111 1 13578999999999842 334556666665432 36
Q ss_pred EEEEecCCCCccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhhcccccCHHHHHHHHhhcCCCChhhHHHHHHHH
Q 002386 711 AFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRT 788 (929)
Q Consensus 711 ivIattn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~d~~l~~LA~~teG~s~~DL~~Lv~~A 788 (929)
.+|++++.+..+.+.+.+ |+. .+.|++|+.++..++++..+...+..++++.+..++..+.| +++.+..+++.+
T Consensus 142 ~~i~~~~~~~~l~~~l~s--r~~-~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~~~~~l~~~ 215 (327)
T 1iqp_A 142 RFILSCNYSSKIIEPIQS--RCA-IFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEG-DMRRAINILQAA 215 (327)
T ss_dssp EEEEEESCGGGSCHHHHH--TEE-EEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTT-CHHHHHHHHHHH
T ss_pred eEEEEeCCccccCHHHHh--hCc-EEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCCC-CHHHHHHHHHHH
Confidence 788888888889999988 877 78999999999999999998888888999999999998866 555555555554
No 78
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.47 E-value=3.5e-13 Score=151.81 Aligned_cols=227 Identities=18% Similarity=0.210 Sum_probs=147.0
Q ss_pred cccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccccc
Q 002386 554 SSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLS 633 (929)
Q Consensus 554 ~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~ 633 (929)
..+.|.+..++.+.+.+..... ...+..++|+||+|||||++++++++.+.........+++++|....
T Consensus 20 ~~~~gr~~e~~~l~~~l~~~~~-----------~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~ 88 (386)
T 2qby_A 20 DELPHREDQIRKIASILAPLYR-----------EEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQID 88 (386)
T ss_dssp SCCTTCHHHHHHHHHSSGGGGG-----------TCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHC
T ss_pred CCCCChHHHHHHHHHHHHHHHc-----------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCC
Confidence 4667888888887764322111 23346799999999999999999999884321001678888876432
Q ss_pred cC-----------------chhhHHHHHHHHHHHHHhc-CCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHH
Q 002386 634 LE-----------------KGPIIRQALSNFISEALDH-APSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMD 695 (929)
Q Consensus 634 ~~-----------------~~~~~~~~l~~~f~~a~~~-~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld 695 (929)
.. ........+..++...... .|.+|+|||+|.+..... . .+...|.+.++
T Consensus 89 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~-------~----~~l~~l~~~~~ 157 (386)
T 2qby_A 89 TPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYN-------D----DILYKLSRINS 157 (386)
T ss_dssp SHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSC-------S----THHHHHHHHHH
T ss_pred CHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCc-------C----HHHHHHhhchh
Confidence 10 0001223334444433333 388999999999873110 0 23444445454
Q ss_pred HhcccccCccCCCcEEEEEecCCC---CccccccccCCCcc-eEeeCCCCcHHHHHHHHHHHHhhc--ccccCHHHHHHH
Q 002386 696 EYGEKRKSSCGIGPIAFVASAQSL---EKIPQSLTSSGRFD-FHVQLPAPAASERKAILEHEIQRR--SLECSDEILLDV 769 (929)
Q Consensus 696 ~~~~~~~~~~~~~~VivIattn~~---~~L~~~L~~~~Rf~-~~i~l~~Pd~~eR~~IL~~~l~~~--~~~~~d~~l~~L 769 (929)
.... .++.+|++++.. ..+++.+.+ ||. ..++|++++.+++.+|++..+... ...++++.+..+
T Consensus 158 ~~~~--------~~~~~I~~~~~~~~~~~~~~~~~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l 227 (386)
T 2qby_A 158 EVNK--------SKISFIGITNDVKFVDLLDPRVKS--SLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLC 227 (386)
T ss_dssp SCCC----------EEEEEEESCGGGGGGCTTHHHH--TTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHH
T ss_pred hcCC--------CeEEEEEEECCCChHhhhCHHHhc--cCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHH
Confidence 3311 147888888876 456777777 665 489999999999999999887642 246788888888
Q ss_pred HhhcC---CCChhhHHHHHHHHHHHHhhccccCCcccccccccccccccccccccccc
Q 002386 770 ASKCD---GYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFL 824 (929)
Q Consensus 770 A~~te---G~s~~DL~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~lt~edf~~al~~~~ 824 (929)
+..+. | .++.+..+++++...+..+ +...++.+++..++....
T Consensus 228 ~~~~~~~~G-~~r~~~~ll~~a~~~a~~~-----------~~~~i~~~~v~~a~~~~~ 273 (386)
T 2qby_A 228 AALAAREHG-DARRALDLLRVSGEIAERM-----------KDTKVKEEYVYMAKEEIE 273 (386)
T ss_dssp HHHHHHTTC-CHHHHHHHHHHHHHHHHHT-----------TCSSCCHHHHHHHHHHHH
T ss_pred HHHHHHhcC-CHHHHHHHHHHHHHHHHhc-----------CCCccCHHHHHHHHHHHh
Confidence 88876 5 5666777888887655432 224578888877776654
No 79
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.46 E-value=2.6e-13 Score=160.08 Aligned_cols=201 Identities=17% Similarity=0.224 Sum_probs=129.6
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCchhhhhhcC---CCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEe
Q 002386 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYH---LPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVC 628 (929)
Q Consensus 552 ~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~---~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~ 628 (929)
++.++.|.+..++++.+.+...... .+..+...+ .+.++++||+||||||||++|+++|++++ ..+++++
T Consensus 37 ~~~dliG~~~~~~~L~~~l~~~~~~-~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~------~~~i~in 109 (516)
T 1sxj_A 37 NLQQVCGNKGSVMKLKNWLANWENS-KKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELG------YDILEQN 109 (516)
T ss_dssp SGGGCCSCHHHHHHHHHHHHTHHHH-HHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTT------CEEEEEC
T ss_pred CHHHhcCCHHHHHHHHHHHHHhHhh-chhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcC------CCEEEEe
Confidence 4678889999988888766432100 001111122 23557899999999999999999999997 7899999
Q ss_pred ccccccCchhhHHHH---------HHHHHHHH-----HhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHH
Q 002386 629 CSRLSLEKGPIIRQA---------LSNFISEA-----LDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIM 694 (929)
Q Consensus 629 ~s~L~~~~~~~~~~~---------l~~~f~~a-----~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~l 694 (929)
|+++...... ... +..+|..+ ....+.||||||+|.+... . + .....|...+
T Consensus 110 ~s~~~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~---~---~------~~l~~L~~~l 175 (516)
T 1sxj_A 110 ASDVRSKTLL--NAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGG---D---R------GGVGQLAQFC 175 (516)
T ss_dssp TTSCCCHHHH--HHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTT---S---T------THHHHHHHHH
T ss_pred CCCcchHHHH--HHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchh---h---H------HHHHHHHHHH
Confidence 9887653221 111 11122222 1246789999999998631 1 0 1234455555
Q ss_pred HHhcccccCccCCCcEEEEEecCCCCccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhhcccccCHHHHHHHHhhcC
Q 002386 695 DEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCD 774 (929)
Q Consensus 695 d~~~~~~~~~~~~~~VivIattn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~d~~l~~LA~~te 774 (929)
+... .++++++++.....+++ +. |+...+.|++|+.+++.+++...+...++.++++.+..++..+.
T Consensus 176 ~~~~---------~~iIli~~~~~~~~l~~-l~---~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~~l~~la~~s~ 242 (516)
T 1sxj_A 176 RKTS---------TPLILICNERNLPKMRP-FD---RVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTTR 242 (516)
T ss_dssp HHCS---------SCEEEEESCTTSSTTGG-GT---TTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHTT
T ss_pred HhcC---------CCEEEEEcCCCCccchh-hH---hceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 4421 13555555444344443 43 44558999999999999999998887788889999999999886
Q ss_pred CCChhhHHHHHHH
Q 002386 775 GYDAYDLEILVDR 787 (929)
Q Consensus 775 G~s~~DL~~Lv~~ 787 (929)
| ..+.+..+++.
T Consensus 243 G-diR~~i~~L~~ 254 (516)
T 1sxj_A 243 G-DIRQVINLLST 254 (516)
T ss_dssp T-CHHHHHHHHTH
T ss_pred C-cHHHHHHHHHH
Confidence 6 33344333333
No 80
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.46 E-value=2.7e-13 Score=151.31 Aligned_cols=142 Identities=16% Similarity=0.196 Sum_probs=97.0
Q ss_pred CcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhc----ccccCccCCCcEEEEEecCCCC-ccccccccCC
Q 002386 656 PSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG----EKRKSSCGIGPIAFVASAQSLE-KIPQSLTSSG 730 (929)
Q Consensus 656 PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~----~~~~~~~~~~~VivIattn~~~-~L~~~L~~~~ 730 (929)
+.+|||||+|.+.+ ...+.|...++... ..........++++|+|+|..+ .++++|.+
T Consensus 145 ~~vl~iDEi~~l~~---------------~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~-- 207 (350)
T 1g8p_A 145 RGYLYIDECNLLED---------------HIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLD-- 207 (350)
T ss_dssp TEEEEETTGGGSCH---------------HHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHT--
T ss_pred CCEEEEeChhhCCH---------------HHHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHh--
Confidence 67999999998852 34556666666521 1110000112588999999744 79999999
Q ss_pred CcceEeeCCCC-cHHHHHHHHHHHHh-----------------------------hcccccCHHHHHHHHhhcCCC---C
Q 002386 731 RFDFHVQLPAP-AASERKAILEHEIQ-----------------------------RRSLECSDEILLDVASKCDGY---D 777 (929)
Q Consensus 731 Rf~~~i~l~~P-d~~eR~~IL~~~l~-----------------------------~~~~~~~d~~l~~LA~~teG~---s 777 (929)
||+..+++++| +.+++.+|++..+. ...+.++++.+..++....+. +
T Consensus 208 R~~~~~~l~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ls~~~~~~l~~~~~~~~~~~ 287 (350)
T 1g8p_A 208 RFGLSVEVLSPRDVETRVEVIRRRDTYDADPKAFLEEWRPKDMDIRNQILEARERLPKVEAPNTALYDCAALCIALGSDG 287 (350)
T ss_dssp TCSEEEECCCCCSHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCBCCHHHHHHHHHHHHHSSSCS
T ss_pred hcceEEEcCCCCcHHHHHHHHHHHHhcccCchhhccccccchHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCC
Confidence 99988999999 67788788866311 123468888888887776543 5
Q ss_pred hhhHHHHHHHHHHHHhhccccCCccccccccccccccccccccccccc
Q 002386 778 AYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLP 825 (929)
Q Consensus 778 ~~DL~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~lt~edf~~al~~~~P 825 (929)
.+.+..+++.|...|..+ +...++.+|+.+++.-...
T Consensus 288 ~R~~~~ll~~a~~~A~~~-----------~~~~v~~~~v~~a~~~~l~ 324 (350)
T 1g8p_A 288 LRGELTLLRSARALAALE-----------GATAVGRDHLKRVATMALS 324 (350)
T ss_dssp HHHHHHHHHHHHHHHHHT-----------TCSBCCHHHHHHHHHHHHG
T ss_pred ccHHHHHHHHHHHHHHHc-----------CCCcCCHHHHHHHHHHHHh
Confidence 688888898887666544 2245888888877665433
No 81
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.45 E-value=1.5e-12 Score=143.15 Aligned_cols=191 Identities=20% Similarity=0.230 Sum_probs=133.3
Q ss_pred ccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEecccc
Q 002386 553 VSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRL 632 (929)
Q Consensus 553 ~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L 632 (929)
+.++.|.+..++.+.+.+.. ... .++||+||+|+|||++|+++++.+.... ....++++++.+.
T Consensus 20 ~~~~~g~~~~~~~l~~~l~~--------------~~~-~~~ll~G~~G~GKt~la~~l~~~l~~~~-~~~~~~~~~~~~~ 83 (323)
T 1sxj_B 20 LSDIVGNKETIDRLQQIAKD--------------GNM-PHMIISGMPGIGKTTSVHCLAHELLGRS-YADGVLELNASDD 83 (323)
T ss_dssp GGGCCSCTHHHHHHHHHHHS--------------CCC-CCEEEECSTTSSHHHHHHHHHHHHHGGG-HHHHEEEECTTSC
T ss_pred HHHHHCCHHHHHHHHHHHHc--------------CCC-CeEEEECcCCCCHHHHHHHHHHHhcCCc-ccCCEEEecCccc
Confidence 45677888888877764421 112 2499999999999999999999974321 1145777887764
Q ss_pred ccCchhhHHHHHHHHHHH--HH-hcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCCCc
Q 002386 633 SLEKGPIIRQALSNFISE--AL-DHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (929)
Q Consensus 633 ~~~~~~~~~~~l~~~f~~--a~-~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (929)
.+ ...++..+..+... .. ...+.+|||||+|.+.. ...+.|...++.... .
T Consensus 84 ~~--~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~---------------~~~~~L~~~le~~~~---------~ 137 (323)
T 1sxj_B 84 RG--IDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTA---------------GAQQALRRTMELYSN---------S 137 (323)
T ss_dssp CS--HHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCH---------------HHHHTTHHHHHHTTT---------T
T ss_pred cC--hHHHHHHHHHHHhccccCCCCCceEEEEECcccCCH---------------HHHHHHHHHHhccCC---------C
Confidence 32 33333333332210 01 23478999999999852 234456666665322 3
Q ss_pred EEEEEecCCCCccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhhcccccCHHHHHHHHhhcCCCChhhHHHHHHHHH
Q 002386 710 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTV 789 (929)
Q Consensus 710 VivIattn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~d~~l~~LA~~teG~s~~DL~~Lv~~A~ 789 (929)
+.+|++++....+.+.+.+ |+. .+.|++|+.+++.++++..+...+..++++.+..++..+.| +++.+..+++.+.
T Consensus 138 ~~~il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~a~~~l~~~~ 213 (323)
T 1sxj_B 138 TRFAFACNQSNKIIEPLQS--QCA-ILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEG-DMRQAINNLQSTV 213 (323)
T ss_dssp EEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTT-CHHHHHHHHHHHH
T ss_pred ceEEEEeCChhhchhHHHh--hce-EEeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 6778888888889999988 776 89999999999999999988877888899999999999877 4555555555544
No 82
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.45 E-value=8.9e-13 Score=141.68 Aligned_cols=205 Identities=15% Similarity=0.118 Sum_probs=125.8
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccc
Q 002386 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSR 631 (929)
Q Consensus 552 ~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~ 631 (929)
+|+++.|.+..+..+.+.+..+.. .+.++||+||||||||++|+++++.+.... .++++++|+.
T Consensus 4 ~f~~~ig~~~~~~~~~~~~~~~~~-------------~~~~vll~G~~GtGKt~la~~i~~~~~~~~---~~~~~v~~~~ 67 (265)
T 2bjv_A 4 YKDNLLGEANSFLEVLEQVSHLAP-------------LDKPVLIIGERGTGKELIASRLHYLSSRWQ---GPFISLNCAA 67 (265)
T ss_dssp ------CCCHHHHHHHHHHHHHTT-------------SCSCEEEECCTTSCHHHHHHHHHHTSTTTT---SCEEEEEGGG
T ss_pred ccccceeCCHHHHHHHHHHHHHhC-------------CCCCEEEECCCCCcHHHHHHHHHHhcCccC---CCeEEEecCC
Confidence 456778888888888887765432 236799999999999999999998765322 5688999988
Q ss_pred cccCchhh-H----HHHH-------HHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcc
Q 002386 632 LSLEKGPI-I----RQAL-------SNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGE 699 (929)
Q Consensus 632 L~~~~~~~-~----~~~l-------~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~ 699 (929)
+....... . ...+ ...+.. ..+.+|||||+|.+.+ .....|...++...-
T Consensus 68 ~~~~~~~~~l~g~~~~~~~g~~~~~~~~l~~---a~~~~l~lDEi~~l~~---------------~~q~~Ll~~l~~~~~ 129 (265)
T 2bjv_A 68 LNENLLDSELFGHEAGAFTGAQKRHPGRFER---ADGGTLFLDELATAPM---------------MVQEKLLRVIEYGEL 129 (265)
T ss_dssp SCHHHHHHHHHCCC---------CCCCHHHH---TTTSEEEEESGGGSCH---------------HHHHHHHHHHHHCEE
T ss_pred CChhHHHHHhcCCcccccccccccccchhhh---cCCcEEEEechHhcCH---------------HHHHHHHHHHHhCCe
Confidence 64221110 0 0000 011222 2357999999999852 334555666664310
Q ss_pred c--ccCccCCCcEEEEEecCCC-------CccccccccCCCcc-eEeeCCCCcH--HHHHHHHHHHHhh----ccc----
Q 002386 700 K--RKSSCGIGPIAFVASAQSL-------EKIPQSLTSSGRFD-FHVQLPAPAA--SERKAILEHEIQR----RSL---- 759 (929)
Q Consensus 700 ~--~~~~~~~~~VivIattn~~-------~~L~~~L~~~~Rf~-~~i~l~~Pd~--~eR~~IL~~~l~~----~~~---- 759 (929)
. ........++.+|+|+|.. ..+++.|.+ ||. ..+.+|+.+. ++...+++.+++. .+.
T Consensus 130 ~~~g~~~~~~~~~~iI~atn~~~~~~~~~~~~~~~L~~--Rl~~~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~ 207 (265)
T 2bjv_A 130 ERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLD--ALAFDVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFP 207 (265)
T ss_dssp CCCCC--CEECCCEEEEEESSCHHHHHHHTSSCHHHHH--HHCSEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCC
T ss_pred ecCCCcccccCCeEEEEecCcCHHHHHHcCCccHHHHH--hhcCcEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCCccc
Confidence 0 0000011247888888873 235677777 885 4677777764 5556665555442 232
Q ss_pred ccCHHHHHHHHhhcCCCChhhHHHHHHHHHHHH
Q 002386 760 ECSDEILLDVASKCDGYDAYDLEILVDRTVHAA 792 (929)
Q Consensus 760 ~~~d~~l~~LA~~teG~s~~DL~~Lv~~A~~~a 792 (929)
.++++.+..+.......+.++|.+++++++..+
T Consensus 208 ~~~~~a~~~L~~~~~~gn~reL~~~l~~~~~~~ 240 (265)
T 2bjv_A 208 GFTERARETLLNYRWPGNIRELKNVVERSVYRH 240 (265)
T ss_dssp CBCHHHHHHHHHSCCTTHHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHhC
Confidence 578888888887765557789999998886543
No 83
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.45 E-value=3e-14 Score=164.89 Aligned_cols=89 Identities=36% Similarity=0.703 Sum_probs=73.5
Q ss_pred CCCccCCCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHc-CCceEEEeccccccc
Q 002386 839 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC-SLRFISVKGPELLNK 917 (929)
Q Consensus 839 ~~~~w~dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~-glnfIsVkg~ELl~k 917 (929)
+.+.|+||+|++++++.|.+.+.||++++.+|.. ...++.|+|||||||||||++|+++|.++ +.+|+.+++++++++
T Consensus 129 ~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~~ 207 (444)
T 2zan_A 129 PNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSK 207 (444)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSG-GGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC-----
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhc-cCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHhh
Confidence 3589999999999999999999999999999985 34567899999999999999999999999 999999999999999
Q ss_pred ccChhhHHHhh
Q 002386 918 YIGASEQAVRR 928 (929)
Q Consensus 918 yIG~SEq~VRd 928 (929)
|+|++|+.+|+
T Consensus 208 ~~g~~~~~~~~ 218 (444)
T 2zan_A 208 WLGESEKLVKN 218 (444)
T ss_dssp ----CCCTHHH
T ss_pred hcchHHHHHHH
Confidence 99999988774
No 84
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.44 E-value=3e-13 Score=148.54 Aligned_cols=191 Identities=17% Similarity=0.231 Sum_probs=130.9
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccc
Q 002386 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSR 631 (929)
Q Consensus 552 ~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~ 631 (929)
.+.++.|.+..++.+.+.+ .. ....++||+||||||||++|+++++.+.... ....++.++|+.
T Consensus 15 ~~~~~~g~~~~~~~l~~~l----~~-----------~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~-~~~~~~~~~~~~ 78 (319)
T 2chq_A 15 TLDEVVGQDEVIQRLKGYV----ER-----------KNIPHLLFSGPPGTGKTATAIALARDLFGEN-WRDNFIEMNASD 78 (319)
T ss_dssp SGGGSCSCHHHHHHHHTTT----TT-----------TCCCCEEEESSSSSSHHHHHHHHHHHHHTTC-HHHHCEEEETTS
T ss_pred CHHHHhCCHHHHHHHHHHH----hC-----------CCCCeEEEECcCCcCHHHHHHHHHHHhcCCc-ccCCeEEEeCcc
Confidence 3566778887777665522 10 1123499999999999999999999974221 124577888876
Q ss_pred cccCchhhHHHHHHHHHHHH-H-hcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCCCc
Q 002386 632 LSLEKGPIIRQALSNFISEA-L-DHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (929)
Q Consensus 632 L~~~~~~~~~~~l~~~f~~a-~-~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (929)
..+ ....+..+....... . ...+.++||||+|.+.. ...+.|...++... ..
T Consensus 79 ~~~--~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~---------------~~~~~L~~~le~~~---------~~ 132 (319)
T 2chq_A 79 ERG--IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA---------------DAQAALRRTMEMYS---------KS 132 (319)
T ss_dssp TTC--TTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCH---------------HHHHTTGGGTSSSS---------SS
T ss_pred ccC--hHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCH---------------HHHHHHHHHHHhcC---------CC
Confidence 543 222233333322111 1 13478999999999852 22333444443321 24
Q ss_pred EEEEEecCCCCccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhhcccccCHHHHHHHHhhcCCCChhhHHHHHHHH
Q 002386 710 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRT 788 (929)
Q Consensus 710 VivIattn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~d~~l~~LA~~teG~s~~DL~~Lv~~A 788 (929)
+.+|++++....+.+.+.+ |+. .+.|++|+.+++.+++...+...+..++++.+..++..+.| +.+.+..+++.+
T Consensus 133 ~~~i~~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G-~~r~~~~~l~~~ 207 (319)
T 2chq_A 133 CRFILSCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG-DFRKAINALQGA 207 (319)
T ss_dssp EEEEEEESCGGGSCHHHHT--TCE-EEECCCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTT-CHHHHHHHHHHH
T ss_pred CeEEEEeCChhhcchHHHh--hCe-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 7888888998899999998 876 89999999999999999999888888999999999987766 455555555554
No 85
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.43 E-value=1.8e-12 Score=145.86 Aligned_cols=189 Identities=17% Similarity=0.258 Sum_probs=133.0
Q ss_pred ccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccce-----------
Q 002386 553 VSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLV----------- 621 (929)
Q Consensus 553 ~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~----------- 621 (929)
+.++.|.+..++.+.+.+.. ...+..+||+||+|+|||++|+++|+.+.......
T Consensus 15 ~~~~vg~~~~~~~L~~~l~~--------------~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~ 80 (373)
T 1jr3_A 15 FADVVGQEHVLTALANGLSL--------------GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCR 80 (373)
T ss_dssp TTTSCSCHHHHHHHHHHHHH--------------TCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHH
T ss_pred hhhccCcHHHHHHHHHHHHh--------------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHH
Confidence 45678888888887775532 12234689999999999999999999986432100
Q ss_pred -------eeEEEEeccccccCchhhHHHHHHHHHHHHH----hcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHH
Q 002386 622 -------AHIVFVCCSRLSLEKGPIIRQALSNFISEAL----DHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFL 690 (929)
Q Consensus 622 -------~~~~~V~~s~L~~~~~~~~~~~l~~~f~~a~----~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L 690 (929)
..+..++...- .....++ .++..+. ...+.||||||+|.+.. ...+.|
T Consensus 81 ~~~~~~~~~~~~~~~~~~--~~~~~~~----~l~~~~~~~~~~~~~~vliiDe~~~l~~---------------~~~~~L 139 (373)
T 1jr3_A 81 EIEQGRFVDLIEIDAASR--TKVEDTR----DLLDNVQYAPARGRFKVYLIDEVHMLSR---------------HSFNAL 139 (373)
T ss_dssp HHHTSCCSSCEEEETTCS--CCSSCHH----HHHHHTTSCCSSSSSEEEEEECGGGSCH---------------HHHHHH
T ss_pred HHhccCCCceEEeccccc--CCHHHHH----HHHHHHhhccccCCeEEEEEECcchhcH---------------HHHHHH
Confidence 01233333321 1223333 3333332 23467999999998841 334556
Q ss_pred HHHHHHhcccccCccCCCcEEEEEecCCCCccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhhcccccCHHHHHHHH
Q 002386 691 VDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVA 770 (929)
Q Consensus 691 ~~~ld~~~~~~~~~~~~~~VivIattn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~d~~l~~LA 770 (929)
...+++.. ..+.+|++++....+.+.+.+ |+ ..++|++|+.+++.++++..+...+..++++.+..++
T Consensus 140 l~~le~~~---------~~~~~Il~~~~~~~l~~~l~s--r~-~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~ 207 (373)
T 1jr3_A 140 LKTLEEPP---------EHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLA 207 (373)
T ss_dssp HHHHHSCC---------SSEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHH
T ss_pred HHHHhcCC---------CceEEEEEeCChHhCcHHHHh--he-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 66665432 147888888888888888888 76 5899999999999999999998888888999999999
Q ss_pred hhcCCCChhhHHHHHHHHH
Q 002386 771 SKCDGYDAYDLEILVDRTV 789 (929)
Q Consensus 771 ~~teG~s~~DL~~Lv~~A~ 789 (929)
..+.| +++++..+++.+.
T Consensus 208 ~~~~G-~~r~~~~~l~~~~ 225 (373)
T 1jr3_A 208 RAAEG-SLRDALSLTDQAI 225 (373)
T ss_dssp HHSSS-CHHHHHHHHHHHH
T ss_pred HHCCC-CHHHHHHHHHHHH
Confidence 99877 6778888887764
No 86
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.42 E-value=1.5e-13 Score=149.19 Aligned_cols=90 Identities=38% Similarity=0.719 Sum_probs=86.2
Q ss_pred CCCccCCCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHcCCceEEEecccccccc
Q 002386 839 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKY 918 (929)
Q Consensus 839 ~~~~w~dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~glnfIsVkg~ELl~ky 918 (929)
+...|++++|++++++.|.+.+.+|..+++.|.+.++..+.++|||||||||||++|+++|++++.+|+.+++++++++|
T Consensus 12 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~ 91 (285)
T 3h4m_A 12 PNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKKF 91 (285)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCCCS
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHHhc
Confidence 35889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cChhhHHHhh
Q 002386 919 IGASEQAVRR 928 (929)
Q Consensus 919 IG~SEq~VRd 928 (929)
+|++++.+++
T Consensus 92 ~~~~~~~~~~ 101 (285)
T 3h4m_A 92 IGEGASLVKD 101 (285)
T ss_dssp TTHHHHHHHH
T ss_pred cchHHHHHHH
Confidence 9999988764
No 87
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.40 E-value=5.4e-13 Score=134.08 Aligned_cols=155 Identities=16% Similarity=0.278 Sum_probs=105.1
Q ss_pred ccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCcc----ceeeEEEEe
Q 002386 553 VSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKD----LVAHIVFVC 628 (929)
Q Consensus 553 ~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~----~~~~~~~V~ 628 (929)
+.++.|.+..++.+.+.+.. ..+.++||+||||||||++|+++++.+..... ....+++++
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~---------------~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (187)
T 2p65_A 21 LDPVIGRDTEIRRAIQILSR---------------RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLD 85 (187)
T ss_dssp SCCCCSCHHHHHHHHHHHTS---------------SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEEC
T ss_pred cchhhcchHHHHHHHHHHhC---------------CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEe
Confidence 45677888877777764411 22467999999999999999999999843110 125678888
Q ss_pred ccccc--cCchhhHHHHHHHHHHHHHhc-CCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCcc
Q 002386 629 CSRLS--LEKGPIIRQALSNFISEALDH-APSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSC 705 (929)
Q Consensus 629 ~s~L~--~~~~~~~~~~l~~~f~~a~~~-~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~ 705 (929)
+..+. ....+.....+..++..+... .|.+|||||+|.+.+.....+.. . .+.+.|...++.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~--~----~~~~~l~~~~~~--------- 150 (187)
T 2p65_A 86 LSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVAEGA--L----DAGNILKPMLAR--------- 150 (187)
T ss_dssp HHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSCTTS--C----CTHHHHHHHHHT---------
T ss_pred HHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhcccccccccc--h----HHHHHHHHHHhc---------
Confidence 87665 334556666677777776654 67899999999997432211111 1 233444444432
Q ss_pred CCCcEEEEEecCCCC-----ccccccccCCCcceEeeCCCCc
Q 002386 706 GIGPIAFVASAQSLE-----KIPQSLTSSGRFDFHVQLPAPA 742 (929)
Q Consensus 706 ~~~~VivIattn~~~-----~L~~~L~~~~Rf~~~i~l~~Pd 742 (929)
..+.+|++++... .+++.+.+ ||. .+++++|+
T Consensus 151 --~~~~ii~~~~~~~~~~~~~~~~~l~~--R~~-~i~i~~p~ 187 (187)
T 2p65_A 151 --GELRCIGATTVSEYRQFIEKDKALER--RFQ-QILVEQPS 187 (187)
T ss_dssp --TCSCEEEEECHHHHHHHTTTCHHHHH--HEE-EEECCSCC
T ss_pred --CCeeEEEecCHHHHHHHHhccHHHHH--hcC-cccCCCCC
Confidence 1367888888654 58899999 999 58999886
No 88
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.40 E-value=8.9e-13 Score=153.75 Aligned_cols=194 Identities=12% Similarity=0.097 Sum_probs=118.1
Q ss_pred ceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEecc-----ccccCchhhHHHHHHHHHHHHHhc---CCcEEEEc
Q 002386 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCS-----RLSLEKGPIIRQALSNFISEALDH---APSIVIFD 662 (929)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s-----~L~~~~~~~~~~~l~~~f~~a~~~---~PsVL~LD 662 (929)
+++||+||||||||++|+++|+.+... .++.++.|. ++.+......... ...|..+... .++|||||
T Consensus 42 ~~VLL~GpPGtGKT~LAraLa~~l~~~----~~f~~~~~~~~t~~dL~G~~~~~~~~~-~g~~~~~~~g~l~~~~IL~ID 116 (500)
T 3nbx_X 42 ESVFLLGPPGIAKSLIARRLKFAFQNA----RAFEYLMTRFSTPEEVFGPLSIQALKD-EGRYERLTSGYLPEAEIVFLD 116 (500)
T ss_dssp CEEEEECCSSSSHHHHHHHGGGGBSSC----CEEEEECCTTCCHHHHHCCBC-----------CBCCTTSGGGCSEEEEE
T ss_pred CeeEeecCchHHHHHHHHHHHHHHhhh----hHHHHHHHhcCCHHHhcCcccHHHHhh-chhHHhhhccCCCcceeeeHH
Confidence 689999999999999999999987422 345566654 2222211110000 1112212111 46799999
Q ss_pred cccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccC-ccCCCcEEEEEecCCCCc---cccccccCCCcceEeeC
Q 002386 663 NLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKS-SCGIGPIAFVASAQSLEK---IPQSLTSSGRFDFHVQL 738 (929)
Q Consensus 663 EiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~-~~~~~~VivIattn~~~~---L~~~L~~~~Rf~~~i~l 738 (929)
|++.+. ......|+..|++..-...+ .......++|++||.... +.+++.+ ||...+.+
T Consensus 117 EI~r~~---------------~~~q~~LL~~lee~~v~i~G~~~~~~~~~iI~ATN~lpe~~~~~~aLld--RF~~~i~v 179 (500)
T 3nbx_X 117 EIWKAG---------------PAILNTLLTAINERQFRNGAHVEKIPMRLLVAASNELPEADSSLEALYD--RMLIRLWL 179 (500)
T ss_dssp SGGGCC---------------HHHHHHHHHHHHSSEEECSSSEEECCCCEEEEEESSCCCTTCTTHHHHT--TCCEEEEC
T ss_pred hHhhhc---------------HHHHHHHHHHHHHHhccCCCCcCCcchhhhhhccccCCCccccHHHHHH--HHHHHHHH
Confidence 998763 25566777777643211100 001111245667775322 3348888 99989999
Q ss_pred CCCcH-HHHHHHHHHHHhh-----------------------cccccCHHHHHHHHhhc---------CCCChhhHHHHH
Q 002386 739 PAPAA-SERKAILEHEIQR-----------------------RSLECSDEILLDVASKC---------DGYDAYDLEILV 785 (929)
Q Consensus 739 ~~Pd~-~eR~~IL~~~l~~-----------------------~~~~~~d~~l~~LA~~t---------eG~s~~DL~~Lv 785 (929)
++|+. +++.+|++..... ....++++.++.++... .|.+++.+..++
T Consensus 180 ~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~v~v~d~v~e~i~~l~~~lr~~r~~~~iS~R~~~~ll 259 (500)
T 3nbx_X 180 DKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLPDHVFELIFMLRQQLDKLPDAPYVSDRRWKKAI 259 (500)
T ss_dssp CSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHTTCBCCHHHHHHHHHHHHHHHHCSSSCCCCHHHHHHHH
T ss_pred HHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCCcccCchHHHHHHHHHHHHhhcCCCCCccchhHHHHHH
Confidence 99987 7788888764321 14456777766665544 478899988888
Q ss_pred HHHHHHHhhccccCCccccccccccccccccc
Q 002386 786 DRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFS 817 (929)
Q Consensus 786 ~~A~~~a~~r~~~~~~~~~~~~~~~lt~edf~ 817 (929)
+.|...|..+ ++..++.+|+.
T Consensus 260 r~A~A~A~l~-----------gr~~Vt~eDv~ 280 (500)
T 3nbx_X 260 RLLQASAFFS-----------GRSAVAPVDLI 280 (500)
T ss_dssp HHHHHHHHHT-----------TCSBCCGGGGG
T ss_pred HHHHHHHhhc-----------CCccccchHHH
Confidence 8776666544 33567888877
No 89
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.40 E-value=2.6e-12 Score=160.45 Aligned_cols=216 Identities=15% Similarity=0.180 Sum_probs=148.5
Q ss_pred cccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccccc
Q 002386 554 SSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLS 633 (929)
Q Consensus 554 ~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~ 633 (929)
..+.|.+..++.+.+.+....... ...-.+..++||+||||||||++|+++++.+.... .++++++|+.+.
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~~g~------~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~---~~~i~i~~~~~~ 628 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRARAGL------KDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTE---EAMIRIDMTEYM 628 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGGGC------SCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSG---GGEEEECTTTCC
T ss_pred cccCCcHHHHHHHHHHHHHHhccc------CCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCC---CcEEEEechhcc
Confidence 356788888888887765332100 00012235799999999999999999999984322 678899998775
Q ss_pred cCch------------hhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccc-
Q 002386 634 LEKG------------PIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEK- 700 (929)
Q Consensus 634 ~~~~------------~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~- 700 (929)
.... +..+ ...+........+++|||||+|.+. ..+.+.|+..|+...-.
T Consensus 629 ~~~~~s~l~g~~~~~~G~~~--~g~l~~~~~~~~~~vl~lDEi~~l~---------------~~~~~~Ll~~l~~~~~~~ 691 (854)
T 1qvr_A 629 EKHAVSRLIGAPPGYVGYEE--GGQLTEAVRRRPYSVILFDEIEKAH---------------PDVFNILLQILDDGRLTD 691 (854)
T ss_dssp SSGGGGGC----------------CHHHHHHHCSSEEEEESSGGGSC---------------HHHHHHHHHHHTTTEECC
T ss_pred chhHHHHHcCCCCCCcCccc--cchHHHHHHhCCCeEEEEecccccC---------------HHHHHHHHHHhccCceEC
Confidence 4311 1111 0122222333456899999999874 26777788888754311
Q ss_pred -ccCccCCCcEEEEEecCCC--------------------------CccccccccCCCcceEeeCCCCcHHHHHHHHHHH
Q 002386 701 -RKSSCGIGPIAFVASAQSL--------------------------EKIPQSLTSSGRFDFHVQLPAPAASERKAILEHE 753 (929)
Q Consensus 701 -~~~~~~~~~VivIattn~~--------------------------~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~ 753 (929)
........++++|+|||.. ..+.+.|.+ ||+..+.|.+|+.+++..|++.+
T Consensus 692 ~~g~~vd~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~--Rl~~~i~~~pl~~edi~~i~~~~ 769 (854)
T 1qvr_A 692 SHGRTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQ 769 (854)
T ss_dssp SSSCCEECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHH--TCSBCCBCCCCCHHHHHHHHHHH
T ss_pred CCCCEeccCCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHH--hcCeEEeCCCCCHHHHHHHHHHH
Confidence 1111222368899999962 235666777 99888999999999999999988
Q ss_pred Hhh---------cccccCHHHHHHHHhhcC--CCChhhHHHHHHHHHHHHhhccc
Q 002386 754 IQR---------RSLECSDEILLDVASKCD--GYDAYDLEILVDRTVHAAVGRYL 797 (929)
Q Consensus 754 l~~---------~~~~~~d~~l~~LA~~te--G~s~~DL~~Lv~~A~~~a~~r~~ 797 (929)
+.. ..+.++++.+..|+..+. .+..++|++++++++..++.+.+
T Consensus 770 l~~~~~~~~~~~~~~~~~~~a~~~L~~~~~~~~gn~R~L~~~i~~~~~~~~~~~i 824 (854)
T 1qvr_A 770 LSYLRARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQKI 824 (854)
T ss_dssp HHHHHHHHHTTTCEEEECHHHHHHHHHHHCBTTTBTSTHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHhCCceEEECHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHHHH
Confidence 763 135689999999999876 78899999999999887776643
No 90
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.38 E-value=4.5e-13 Score=143.25 Aligned_cols=88 Identities=30% Similarity=0.573 Sum_probs=77.2
Q ss_pred CCccCCCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHcCCceEEEeccccccccc
Q 002386 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYI 919 (929)
Q Consensus 840 ~~~w~dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~glnfIsVkg~ELl~kyI 919 (929)
.+.|++++|++++++.|++.+.+ .++++.|...+...+.|+|||||||||||++|+++|++++.+|+.++++++.+.|.
T Consensus 2 ~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~ 80 (262)
T 2qz4_A 2 GVSFKDVAGMHEAKLEVREFVDY-LKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIG 80 (262)
T ss_dssp CCCTTSSCSCHHHHHHHHHHHHH-HHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSST
T ss_pred CCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhcc
Confidence 47899999999999999999887 78888999999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHhh
Q 002386 920 GASEQAVRR 928 (929)
Q Consensus 920 G~SEq~VRd 928 (929)
|.+++.+++
T Consensus 81 ~~~~~~~~~ 89 (262)
T 2qz4_A 81 GLGAARVRS 89 (262)
T ss_dssp THHHHHHHH
T ss_pred ChhHHHHHH
Confidence 999988763
No 91
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.38 E-value=5e-12 Score=141.45 Aligned_cols=196 Identities=20% Similarity=0.299 Sum_probs=125.5
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCcc-ce---------
Q 002386 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKD-LV--------- 621 (929)
Q Consensus 552 ~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~-~~--------- 621 (929)
+++++.|.+..++.+.+.+ ... ...+ +++|+||+|+||||+++++|+.+..... ..
T Consensus 12 ~~~~~vg~~~~~~~l~~~~---~~~----------~~~~-~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~ 77 (354)
T 1sxj_E 12 SLNALSHNEELTNFLKSLS---DQP----------RDLP-HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVT 77 (354)
T ss_dssp SGGGCCSCHHHHHHHHTTT---TCT----------TCCC-CEEEECSTTSSHHHHHHTHHHHHSCTTCCC----------
T ss_pred CHHHhcCCHHHHHHHHHHH---hhC----------CCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecc
Confidence 3567778877766654421 011 1222 3999999999999999999997532211 00
Q ss_pred -------------eeEEEEeccccccCchhhHHHHHHHHHHHH----------HhcCCcEEEEccccccccCCCCCCCCC
Q 002386 622 -------------AHIVFVCCSRLSLEKGPIIRQALSNFISEA----------LDHAPSIVIFDNLDSIISSSSDPEGSQ 678 (929)
Q Consensus 622 -------------~~~~~V~~s~L~~~~~~~~~~~l~~~f~~a----------~~~~PsVL~LDEiD~L~~~~~~~~~~~ 678 (929)
..+..++++.........++..+..+.... ....|.+++|||++.+-
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~---------- 147 (354)
T 1sxj_E 78 ASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLT---------- 147 (354)
T ss_dssp --------CCEECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSC----------
T ss_pred cccccceeeeecccceEEecHhhcCCcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccC----------
Confidence 012233332221111111233222221100 02367799999999853
Q ss_pred CchhHHHHHHHHHHHHHHhcccccCccCCCcEEEEEecCCCCccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhhcc
Q 002386 679 PSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRS 758 (929)
Q Consensus 679 ~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~VivIattn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~ 758 (929)
....+.|...+++... +..+|.+++.++.+.+.+++ |+ ..++|++|+.+++.++++..+...+
T Consensus 148 -----~~~~~~L~~~le~~~~---------~~~~Il~t~~~~~l~~~l~s--R~-~~~~~~~~~~~~~~~~l~~~~~~~~ 210 (354)
T 1sxj_E 148 -----KDAQAALRRTMEKYSK---------NIRLIMVCDSMSPIIAPIKS--QC-LLIRCPAPSDSEISTILSDVVTNER 210 (354)
T ss_dssp -----HHHHHHHHHHHHHSTT---------TEEEEEEESCSCSSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHT
T ss_pred -----HHHHHHHHHHHHhhcC---------CCEEEEEeCCHHHHHHHHHh--hc-eEEecCCcCHHHHHHHHHHHHHHcC
Confidence 1334556666666432 36778888888889999998 87 5899999999999999999998888
Q ss_pred cccC-HHHHHHHHhhcCCCChhhHHHHHHHHH
Q 002386 759 LECS-DEILLDVASKCDGYDAYDLEILVDRTV 789 (929)
Q Consensus 759 ~~~~-d~~l~~LA~~teG~s~~DL~~Lv~~A~ 789 (929)
+.++ ++.+..++..+.| +.+++..+++.+.
T Consensus 211 ~~~~~~~~l~~i~~~~~G-~~r~a~~~l~~~~ 241 (354)
T 1sxj_E 211 IQLETKDILKRIAQASNG-NLRVSLLMLESMA 241 (354)
T ss_dssp CEECCSHHHHHHHHHHTT-CHHHHHHHHTHHH
T ss_pred CCCCcHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 8888 8999999998876 5666666666654
No 92
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.37 E-value=2.9e-12 Score=140.79 Aligned_cols=199 Identities=16% Similarity=0.193 Sum_probs=126.9
Q ss_pred ccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEecccccc
Q 002386 555 SLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSL 634 (929)
Q Consensus 555 ~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~~ 634 (929)
++.|.+..+.++.+.+..+.. .+.++||+|+||||||++|+++++...... .+++.++|..+..
T Consensus 3 ~iig~s~~~~~~~~~~~~~a~-------------~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~---~~~v~v~~~~~~~ 66 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMVAP-------------SDATVLIHGDSGTGKELVARALHACSARSD---RPLVTLNCAALNE 66 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHHCS-------------TTSCEEEESCTTSCHHHHHHHHHHHSSCSS---SCCCEEECSSCCH
T ss_pred CcEECCHHHHHHHHHHHHHhC-------------CCCcEEEECCCCchHHHHHHHHHHhCcccC---CCeEEEeCCCCCh
Confidence 456788888888887765432 236799999999999999999999764322 5788999987642
Q ss_pred Cchhh-------------HHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccc-
Q 002386 635 EKGPI-------------IRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEK- 700 (929)
Q Consensus 635 ~~~~~-------------~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~- 700 (929)
..... .. .....|..+ .+.+|||||+|.+.. .....|+..++...-.
T Consensus 67 ~l~~~~lfg~~~g~~tg~~~-~~~g~~~~a---~~g~L~LDEi~~l~~---------------~~q~~Ll~~l~~~~~~~ 127 (304)
T 1ojl_A 67 SLLESELFGHEKGAFTGADK-RREGRFVEA---DGGTLFLDEIGDISP---------------LMQVRLLRAIQEREVQR 127 (304)
T ss_dssp HHHHHHHTCCCSSCCC---C-CCCCHHHHH---TTSEEEEESCTTCCH---------------HHHHHHHHHHHSSBCCB
T ss_pred HHHHHHhcCccccccCchhh-hhcCHHHhc---CCCEEEEeccccCCH---------------HHHHHHHHHHhcCEeee
Confidence 11100 00 011223333 346999999998852 3344566666643210
Q ss_pred -ccCccCCCcEEEEEecCCC-------CccccccccCCCcc-eEeeCCCCc--HHHHHHHHHHHHhhc-------ccccC
Q 002386 701 -RKSSCGIGPIAFVASAQSL-------EKIPQSLTSSGRFD-FHVQLPAPA--ASERKAILEHEIQRR-------SLECS 762 (929)
Q Consensus 701 -~~~~~~~~~VivIattn~~-------~~L~~~L~~~~Rf~-~~i~l~~Pd--~~eR~~IL~~~l~~~-------~~~~~ 762 (929)
........++.+|++||.. ..+++.|.. ||. ..+++|+.. .++...++++++... ...++
T Consensus 128 ~g~~~~~~~~~riI~atn~~l~~~v~~g~fr~~L~~--Rl~~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s 205 (304)
T 1ojl_A 128 VGSNQTISVDVRLIAATHRDLAEEVSAGRFRQDLYY--RLNVVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFT 205 (304)
T ss_dssp TTBCCCCBCCCEEEEEESSCHHHHHHHTSSCHHHHH--HHSSEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBC
T ss_pred cCCcccccCCeEEEEecCccHHHHHHhCCcHHHHHh--hcCeeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCC
Confidence 0001111257889998874 124455555 664 446777766 455566666665431 24578
Q ss_pred HHHHHHHHhhcCCCChhhHHHHHHHHHH
Q 002386 763 DEILLDVASKCDGYDAYDLEILVDRTVH 790 (929)
Q Consensus 763 d~~l~~LA~~teG~s~~DL~~Lv~~A~~ 790 (929)
++.+..+.......+.++|.+++++++.
T Consensus 206 ~~a~~~L~~~~wpGnvReL~~~l~~~~~ 233 (304)
T 1ojl_A 206 PQAMDLLIHYDWPGNIRELENAIERAVV 233 (304)
T ss_dssp HHHHHHHHHCCCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHH
Confidence 8999999988755577899999988864
No 93
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.36 E-value=4.5e-13 Score=146.35 Aligned_cols=88 Identities=36% Similarity=0.704 Sum_probs=81.6
Q ss_pred CCccCCCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHcCCceEEEeccccccccc
Q 002386 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYI 919 (929)
Q Consensus 840 ~~~w~dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~glnfIsVkg~ELl~kyI 919 (929)
.+.|++++|++++++.|.+.+.+|..+++.|.... .++.++||+||||||||++|+++|++++.+|+.++++++.++|+
T Consensus 17 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~~ 95 (297)
T 3b9p_A 17 KVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYV 95 (297)
T ss_dssp CCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGG-CCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSSSSC
T ss_pred CCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCC-CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhhccc
Confidence 47899999999999999999999999999987654 45789999999999999999999999999999999999999999
Q ss_pred ChhhHHHhh
Q 002386 920 GASEQAVRR 928 (929)
Q Consensus 920 G~SEq~VRd 928 (929)
|++++.+|.
T Consensus 96 ~~~~~~~~~ 104 (297)
T 3b9p_A 96 GDGEKLVRA 104 (297)
T ss_dssp SCHHHHHHH
T ss_pred chHHHHHHH
Confidence 999988764
No 94
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.36 E-value=5.5e-13 Score=142.63 Aligned_cols=89 Identities=26% Similarity=0.556 Sum_probs=78.1
Q ss_pred CCCccCCCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHcCCceEEEecccccccc
Q 002386 839 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKY 918 (929)
Q Consensus 839 ~~~~w~dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~glnfIsVkg~ELl~ky 918 (929)
+...|++++|++.+++.|.+.+.+ .+++..|.+.+.+.+.|+|||||||||||++|+++|++++.+|+.++++++.++|
T Consensus 7 ~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~~~ 85 (257)
T 1lv7_A 7 IKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMF 85 (257)
T ss_dssp SCCCGGGSCSCHHHHHHTHHHHHH-HHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTSC
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHH-HhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHHHh
Confidence 357899999999999999999886 6778888888889999999999999999999999999999999999999999999
Q ss_pred cChhhHHHhh
Q 002386 919 IGASEQAVRR 928 (929)
Q Consensus 919 IG~SEq~VRd 928 (929)
+|++++.+++
T Consensus 86 ~~~~~~~~~~ 95 (257)
T 1lv7_A 86 VGVGASRVRD 95 (257)
T ss_dssp CCCCHHHHHH
T ss_pred hhhhHHHHHH
Confidence 9999988764
No 95
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.36 E-value=4.9e-13 Score=150.40 Aligned_cols=88 Identities=33% Similarity=0.612 Sum_probs=82.2
Q ss_pred CCccCCCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHcCCceEEEeccccccccc
Q 002386 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYI 919 (929)
Q Consensus 840 ~~~w~dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~glnfIsVkg~ELl~kyI 919 (929)
...|++++|++++++.|++.+.||++++.+|.... +.+.++|||||||||||++|+++|++++.+|+.+++++++++|+
T Consensus 80 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~~~ 158 (357)
T 3d8b_A 80 PVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWV 158 (357)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCCSST
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhcc-CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhcccc
Confidence 58999999999999999999999999999887654 56789999999999999999999999999999999999999999
Q ss_pred ChhhHHHhh
Q 002386 920 GASEQAVRR 928 (929)
Q Consensus 920 G~SEq~VRd 928 (929)
|++++.+|.
T Consensus 159 g~~~~~~~~ 167 (357)
T 3d8b_A 159 GEGEKMVRA 167 (357)
T ss_dssp THHHHHHHH
T ss_pred chHHHHHHH
Confidence 999998874
No 96
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.36 E-value=3.8e-13 Score=156.97 Aligned_cols=88 Identities=41% Similarity=0.750 Sum_probs=85.2
Q ss_pred CccCCCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHcCCceEEEecccccccccC
Q 002386 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIG 920 (929)
Q Consensus 841 ~~w~dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~glnfIsVkg~ELl~kyIG 920 (929)
..|++|+|++.+++.|++.+.+|+++++.|...+...+.|+|||||||||||++|+++|.+++.+|+.++++++.++|+|
T Consensus 201 ~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~~g 280 (489)
T 3hu3_A 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAG 280 (489)
T ss_dssp CCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSCTT
T ss_pred CCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhhcc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHhh
Q 002386 921 ASEQAVRR 928 (929)
Q Consensus 921 ~SEq~VRd 928 (929)
+++..+|.
T Consensus 281 ~~~~~~~~ 288 (489)
T 3hu3_A 281 ESESNLRK 288 (489)
T ss_dssp HHHHHHHH
T ss_pred hhHHHHHH
Confidence 99998864
No 97
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.36 E-value=4.1e-12 Score=171.25 Aligned_cols=262 Identities=18% Similarity=0.245 Sum_probs=145.0
Q ss_pred ceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccccccCchhhHHHHHHHHHHHHHhcCCcEEEEccccccccC
Q 002386 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISS 670 (929)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~ 670 (929)
.+.++.||+|||||++++++|+.++ .+++.++|++-.. ... +..+|..+. ..++++++||++.+-+
T Consensus 646 ~~~~l~GpaGtGKTe~vk~LA~~lg------~~~v~~nc~e~ld--~~~----lg~~~~g~~-~~Gaw~~~DE~nr~~~- 711 (2695)
T 4akg_A 646 YGGCFFGPAGTGKTETVKAFGQNLG------RVVVVFNCDDSFD--YQV----LSRLLVGIT-QIGAWGCFDEFNRLDE- 711 (2695)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHTTT------CCCEEEETTSSCC--HHH----HHHHHHHHH-HHTCEEEEETTTSSCH-
T ss_pred CCCcccCCCCCCcHHHHHHHHHHhC------CcEEEEECCCCCC--hhH----hhHHHHHHH-hcCCEeeehhhhhcCh-
Confidence 5689999999999999999999999 8899999987543 222 344444444 2357999999998742
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHHHhccccc-------CccCCCcEEEEEecCC----CCccccccccCCCcceEeeCC
Q 002386 671 SSDPEGSQPSTSVIALTKFLVDIMDEYGEKRK-------SSCGIGPIAFVASAQS----LEKIPQSLTSSGRFDFHVQLP 739 (929)
Q Consensus 671 ~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~-------~~~~~~~VivIattn~----~~~L~~~L~~~~Rf~~~i~l~ 739 (929)
.....+..++....+....... ...-..+..+++|.|+ ...||++|++ ||. .+.+.
T Consensus 712 ----------evLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~--~Fr-~v~m~ 778 (2695)
T 4akg_A 712 ----------KVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENLKK--SFR-EFSMK 778 (2695)
T ss_dssp ----------HHHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHHHT--TEE-EEECC
T ss_pred ----------HHHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHHHh--heE-EEEee
Confidence 2223343444333333221110 0111234678888884 4578999988 885 78999
Q ss_pred CCcHHHHHHHHHHHHhhcccccCHHH-------HHHHHhhc-----CCCChhhHHHHHHHHHHHHhhccccCCc-----c
Q 002386 740 APAASERKAILEHEIQRRSLECSDEI-------LLDVASKC-----DGYDAYDLEILVDRTVHAAVGRYLHSDS-----S 802 (929)
Q Consensus 740 ~Pd~~eR~~IL~~~l~~~~~~~~d~~-------l~~LA~~t-----eG~s~~DL~~Lv~~A~~~a~~r~~~~~~-----~ 802 (929)
.||.+...+|+-.. .++...... +..+.+.. ..|..+.++.++..|... .|...... .
T Consensus 779 ~Pd~~~i~ei~l~s---~Gf~~a~~la~kiv~~~~l~~e~ls~q~hydfglRalksvL~~ag~l--kr~~~~e~~~l~~a 853 (2695)
T 4akg_A 779 SPQSGTIAEMILQI---MGFEDSKSLASKIVHFLELLSSKCSSMNHYHFGLRTLKGVLRNCSPL--ISEFGEGEKTVVES 853 (2695)
T ss_dssp CCCHHHHHHHHHHH---HHCSSHHHHHHHHHHHHHHHHHHSCCCTTCCCSHHHHHHHHHHHHHH--HHHSCSSHHHHHHH
T ss_pred CCCHHHHHHHHHHh---cCCCchHHHHHHHHHHHHHHHHHhCcCCcccccHHHHHHHHHHHHHh--hccCCcHHHHHHHH
Confidence 99999888885432 222212211 12222222 236677887777665422 11100000 0
Q ss_pred ccccccccccccc---cccccccccccccccccccccCCCCCccCCCCCchhhHHHHHHHHh---------cCCCchhhh
Q 002386 803 FEKHIKPTLVRDD---FSQAMHEFLPVAMRDITKTSAEGGRSGWDDVGGLTDIQNAIKEMIE---------LPSKFPNIF 870 (929)
Q Consensus 803 ~~~~~~~~lt~ed---f~~al~~~~P~slr~v~l~~~~~~~~~w~dIgGL~~vk~~L~e~le---------~p~k~~~if 870 (929)
.....-+.+..+| |...+.+.-|. +... .+..+.++.+.+.+. |..|..+++
T Consensus 854 l~~~~lpk~~~~D~~lf~~li~dlFp~--------------~~~~--~~~~~l~~~i~~~~~~~~l~~~~~~~~K~~ql~ 917 (2695)
T 4akg_A 854 LKRVILPSLGDTDELVFKDELSKIFDS--------------AGTP--LNSKAIVQCLKDAGQRSGFSMSEEFLKKCMQFY 917 (2695)
T ss_dssp HHHHTGGGCCHHHHHHHHHHHHHHCCC--------------CSCC--SSSSHHHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred HHHhccccCchhhHHHHHHHHHHhCCC--------------CCCC--CChHHHHHHHHHHHHHcCCcccHHHHHHHHHHH
Confidence 0000001111111 22222222221 1111 233445555544433 112223333
Q ss_pred hhCCCCCCceeEEecCCCCcHHHHHHHHHHHc
Q 002386 871 AQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC 902 (929)
Q Consensus 871 ~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~ 902 (929)
.- +..+.|++|+||||||||++.+++|+..
T Consensus 918 e~--~~~r~gvmlvGptgsGKTt~~~~La~al 947 (2695)
T 4akg_A 918 YM--QKTQQALILVGKAGCGKTATWKTVIDAM 947 (2695)
T ss_dssp HH--HHHCSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HH--HHhcceEEEECCCCCCHHHHHHHHHHHH
Confidence 33 2346899999999999999999999764
No 98
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.34 E-value=1.4e-12 Score=151.03 Aligned_cols=89 Identities=31% Similarity=0.617 Sum_probs=83.8
Q ss_pred CCCccCCCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHcCCceEEEecccccccc
Q 002386 839 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKY 918 (929)
Q Consensus 839 ~~~~w~dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~glnfIsVkg~ELl~ky 918 (929)
+.+.|+||+|++++++.|++.+.+ .+.+..|.+.+.+.+.|+||+||||||||+||+++|.+++.+|+.+++++++++|
T Consensus 11 ~~~~f~di~G~~~~~~~l~e~v~~-l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~~ 89 (476)
T 2ce7_A 11 KRVTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELF 89 (476)
T ss_dssp CCCCGGGCCSCHHHHHHHHHHHHH-HHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTCC
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHH-hhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHHH
Confidence 357899999999999999999886 5778899999999999999999999999999999999999999999999999999
Q ss_pred cChhhHHHhh
Q 002386 919 IGASEQAVRR 928 (929)
Q Consensus 919 IG~SEq~VRd 928 (929)
+|.+++++|+
T Consensus 90 ~g~~~~~~r~ 99 (476)
T 2ce7_A 90 VGVGAARVRD 99 (476)
T ss_dssp TTHHHHHHHH
T ss_pred hcccHHHHHH
Confidence 9999999875
No 99
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.31 E-value=1.8e-11 Score=136.57 Aligned_cols=178 Identities=18% Similarity=0.261 Sum_probs=123.8
Q ss_pred ccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEecccc
Q 002386 553 VSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRL 632 (929)
Q Consensus 553 ~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L 632 (929)
+.++.|.+.+++.+...+.. ... .++||+||||||||++|+++|+.+.... ....+..+++++.
T Consensus 24 ~~~~~g~~~~~~~L~~~i~~--------------g~~-~~~ll~Gp~G~GKTtla~~la~~l~~~~-~~~~~~~~~~~~~ 87 (340)
T 1sxj_C 24 LDEVYGQNEVITTVRKFVDE--------------GKL-PHLLFYGPPGTGKTSTIVALAREIYGKN-YSNMVLELNASDD 87 (340)
T ss_dssp GGGCCSCHHHHHHHHHHHHT--------------TCC-CCEEEECSSSSSHHHHHHHHHHHHHTTS-HHHHEEEECTTSC
T ss_pred HHHhcCcHHHHHHHHHHHhc--------------CCC-ceEEEECCCCCCHHHHHHHHHHHHcCCC-ccceEEEEcCccc
Confidence 45566777777766554321 111 2499999999999999999999975322 1134666777653
Q ss_pred ccCchhhHHHHHHHHHHHH--HhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCCCcE
Q 002386 633 SLEKGPIIRQALSNFISEA--LDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPI 710 (929)
Q Consensus 633 ~~~~~~~~~~~l~~~f~~a--~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V 710 (929)
.+ ...++..+..+.+.. ....+.|++|||+|.+.. ...+.|...++.... ..
T Consensus 88 ~~--~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~---------------~~~~~L~~~le~~~~---------~~ 141 (340)
T 1sxj_C 88 RG--IDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTN---------------AAQNALRRVIERYTK---------NT 141 (340)
T ss_dssp CS--HHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCH---------------HHHHHHHHHHHHTTT---------TE
T ss_pred cc--HHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCH---------------HHHHHHHHHHhcCCC---------Ce
Confidence 32 334444343332111 112367999999998842 234556677766542 35
Q ss_pred EEEEecCCCCccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhhcccccCHHHHHHHHhhcCC
Q 002386 711 AFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDG 775 (929)
Q Consensus 711 ivIattn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~d~~l~~LA~~teG 775 (929)
.+|.++|.+..+.+.+++ |+. .+.|++++.++..+++...+...++.++++.+..++..+.|
T Consensus 142 ~~il~~n~~~~i~~~i~s--R~~-~~~~~~l~~~~~~~~l~~~~~~~~~~i~~~~~~~i~~~s~G 203 (340)
T 1sxj_C 142 RFCVLANYAHKLTPALLS--QCT-RFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNG 203 (340)
T ss_dssp EEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHTTTCCBCHHHHHHHHHHHTT
T ss_pred EEEEEecCccccchhHHh--hce-eEeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 677778888899999999 876 78999999999999999988777888899989999988766
No 100
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=99.30 E-value=1.2e-11 Score=167.31 Aligned_cols=303 Identities=14% Similarity=0.161 Sum_probs=157.6
Q ss_pred CceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccccccCchhhHHHHHHHHHHHHHh------------cCCc
Q 002386 590 PGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALD------------HAPS 657 (929)
Q Consensus 590 ~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~~~~~~~~~~~l~~~f~~a~~------------~~Ps 657 (929)
+.++||+||+|||||++++.+...+. . ..++.++++.-.. ...+...+...++.... ++..
T Consensus 1304 ~~pvLL~GptGtGKT~li~~~L~~l~---~--~~~~~infS~~Tt--a~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~ 1376 (3245)
T 3vkg_A 1304 HRPLILCGPPGSGKTMTLTSTLRAFP---D--FEVVSLNFSSATT--PELLLKTFDHHCEYKRTPSGETVLRPTQLGKWL 1376 (3245)
T ss_dssp TCCCEEESSTTSSHHHHHHHHGGGCT---T--EEEEEECCCTTCC--HHHHHHHHHHHEEEEECTTSCEEEEESSTTCEE
T ss_pred CCcEEEECCCCCCHHHHHHHHHHhCC---C--CceEEEEeeCCCC--HHHHHHHHhhcceEEeccCCCcccCCCcCCceE
Confidence 36799999999999988766544332 1 4567888876543 22223323221110010 1124
Q ss_pred EEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhc--c-cccCccCCCcEEEEEecCCCC-----ccccccccC
Q 002386 658 IVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG--E-KRKSSCGIGPIAFVASAQSLE-----KIPQSLTSS 729 (929)
Q Consensus 658 VL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~--~-~~~~~~~~~~VivIattn~~~-----~L~~~L~~~ 729 (929)
|+||||++... .+..+.+ ...+.|...+|... . .........++.+|||+|++. .++++|.|
T Consensus 1377 VlFiDDiNmp~---~D~yGtQ------~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r- 1446 (3245)
T 3vkg_A 1377 VVFCDEINLPS---TDKYGTQ------RVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLR- 1446 (3245)
T ss_dssp EEEETTTTCCC---CCTTSCC------HHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHT-
T ss_pred EEEecccCCCC---ccccccc------cHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHh-
Confidence 99999998743 3444443 45666666666421 1 111122335689999999873 58999998
Q ss_pred CCcceEeeCCCCcHHHHHHHHHHHHhhcc-c--cc---CHHH-------HHHHHh-------hcCCCChhhHHHHHHHHH
Q 002386 730 GRFDFHVQLPAPAASERKAILEHEIQRRS-L--EC---SDEI-------LLDVAS-------KCDGYDAYDLEILVDRTV 789 (929)
Q Consensus 730 ~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~-~--~~---~d~~-------l~~LA~-------~teG~s~~DL~~Lv~~A~ 789 (929)
||. .+.++.|+.++...|+..++.... . .+ .+.. +..+.. ...-|+.|||..+++...
T Consensus 1447 -~F~-vi~i~~ps~esL~~If~til~~~l~~~p~l~~~~~~lv~ati~ly~~v~~~~lp~~k~HY~FnLRDLsrv~qGll 1524 (3245)
T 3vkg_A 1447 -HAP-ILLVDFPSTSSLTQIYGTFNRALMKLLPNLRSFADNLTDAMVEFYSESQKRFTPDIQAHYIYSPRELSRWDRALL 1524 (3245)
T ss_dssp -TCC-EEECCCCCHHHHHHHHHHHHHHHTTSCGGGTTSHHHHHHHHHHHHHHHHHHSCTTTSTTCCCCHHHHHHHHHHHH
T ss_pred -hce-EEEeCCCCHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCccccHHHHHHHHHHHH
Confidence 888 689999999999999887655311 0 11 1111 111111 124568889887766543
Q ss_pred HHHhhccccCCccc------c---ccccccccccc---cccccccccccccccc---cccccC----CCCCccCCCCCch
Q 002386 790 HAAVGRYLHSDSSF------E---KHIKPTLVRDD---FSQAMHEFLPVAMRDI---TKTSAE----GGRSGWDDVGGLT 850 (929)
Q Consensus 790 ~~a~~r~~~~~~~~------~---~~~~~~lt~ed---f~~al~~~~P~slr~v---~l~~~~----~~~~~w~dIgGL~ 850 (929)
.............. + --..+-++.+| |.+.+.+.....+.+. ....|- .....+..+ ..+
T Consensus 1525 ~~~~~~~~~~~~~lvrLW~HE~~RVF~DRLv~~~Dr~~f~~~l~~~~~~~F~~~~~~~~~~pllf~~f~~~~Y~~v-~~~ 1603 (3245)
T 3vkg_A 1525 EAIQTMDGCTLEGLVRLWAHEALRLFQDRLVETEEKEWTDKKIDEVALKHFPSVNLDALKRPILYSNWLTKDYQPV-NRS 1603 (3245)
T ss_dssp HHHHTSSCCCTTHHHHHHHHHHHHHHTTTCSSHHHHHHHHHHHHHHHHHHCTTSCGGGGCSSCCCCSSCC----CC-CHH
T ss_pred HhcCccccCCHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCcchhhhcccCcchhhhccccCccC-CHH
Confidence 32100000000000 0 00011122222 1111111000000000 000000 000112233 335
Q ss_pred hhHHHHHHHHhcCCC---------------chhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHcCCceEEEecc
Q 002386 851 DIQNAIKEMIELPSK---------------FPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGP 912 (929)
Q Consensus 851 ~vk~~L~e~le~p~k---------------~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~glnfIsVkg~ 912 (929)
++++.+.+.++.... |--...+.-..+++++||.|.+||||++|+|..|..+|+.++.|...
T Consensus 1604 ~l~~~l~~~L~~yn~~~~~m~LVlF~daleHv~RI~RIL~qp~GhaLLVGvgGSGkqSLtrLAa~i~~~~vfqi~i~ 1680 (3245)
T 3vkg_A 1604 DLREYVKARLKVFYEEELDVPLVLFNEVLDHILRIDRVFRQPQGHALLIGVSGGGKSVLSRFVAWMNGLSIYTIKVN 1680 (3245)
T ss_dssp HHHHHHHHHHHTTC------CCCCCHHHHHHHHHHHHHHTSTTCCEEEEESTTSSHHHHHHHHHHHTTCEEECCC--
T ss_pred HHHHHHHHHHHHHHhcccCceEEeHHHHHHHHHHHHHHHccCCCCeEEecCCCCcHHHHHHHHHHHhCCeeEEEeee
Confidence 566666665542210 11112222235788999999999999999999999999999988644
No 101
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.28 E-value=2.4e-12 Score=146.51 Aligned_cols=88 Identities=34% Similarity=0.610 Sum_probs=74.8
Q ss_pred CCccCCCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHcCCceEEEeccccccccc
Q 002386 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYI 919 (929)
Q Consensus 840 ~~~w~dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~glnfIsVkg~ELl~kyI 919 (929)
.+.|++|+|++.+++.|.+.+.+|..++++|...+ .++.++|||||||||||++|+++|.+++.+|+.++++++.++|+
T Consensus 111 ~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~~ 189 (389)
T 3vfd_A 111 AVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLR-APARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYV 189 (389)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-CCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC-----
T ss_pred CCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccC-CCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhhcccc
Confidence 47899999999999999999999999999888765 45689999999999999999999999999999999999999999
Q ss_pred ChhhHHHhh
Q 002386 920 GASEQAVRR 928 (929)
Q Consensus 920 G~SEq~VRd 928 (929)
|++|+.++.
T Consensus 190 g~~~~~~~~ 198 (389)
T 3vfd_A 190 GEGEKLVRA 198 (389)
T ss_dssp --CHHHHHH
T ss_pred chHHHHHHH
Confidence 999988764
No 102
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.28 E-value=9.2e-13 Score=141.66 Aligned_cols=88 Identities=27% Similarity=0.581 Sum_probs=81.9
Q ss_pred CCCccCCCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHcCCceEEEecccccccc
Q 002386 839 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKY 918 (929)
Q Consensus 839 ~~~~w~dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~glnfIsVkg~ELl~ky 918 (929)
+...|++++|++++++.|.+.+.+ ..+++.|.+.+.+.+.|+|||||||||||++|+++|++++.+|+.++++++.++|
T Consensus 6 ~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~ 84 (268)
T 2r62_A 6 PNVRFKDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMF 84 (268)
T ss_dssp CCCCSTTSSSCTTTHHHHHHHHHH-HHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTTSC
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHH-HHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHHhh
Confidence 357899999999999999999886 7889999999999999999999999999999999999999999999999999999
Q ss_pred cChhhHHHh
Q 002386 919 IGASEQAVR 927 (929)
Q Consensus 919 IG~SEq~VR 927 (929)
+|.+++.+|
T Consensus 85 ~~~~~~~~~ 93 (268)
T 2r62_A 85 VGLGASRVR 93 (268)
T ss_dssp SSSCSSSSS
T ss_pred cchHHHHHH
Confidence 999887654
No 103
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.25 E-value=5.7e-11 Score=132.27 Aligned_cols=178 Identities=15% Similarity=0.159 Sum_probs=117.5
Q ss_pred ccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccc----------------
Q 002386 557 SWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL---------------- 620 (929)
Q Consensus 557 ~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~---------------- 620 (929)
.|+...++.+.+.+.. ...+..+||+||+|+|||++|+++|+.+......
T Consensus 5 pw~~~~~~~l~~~i~~--------------~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~ 70 (334)
T 1a5t_A 5 PWLRPDFEKLVASYQA--------------GRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQA 70 (334)
T ss_dssp GGGHHHHHHHHHHHHT--------------TCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHH
T ss_pred CchHHHHHHHHHHHHc--------------CCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhc
Confidence 4666666666654321 2234569999999999999999999998643211
Q ss_pred --eeeEEEEecccc-ccCchhhHHHHHHHHHHHHH----hcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHH
Q 002386 621 --VAHIVFVCCSRL-SLEKGPIIRQALSNFISEAL----DHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDI 693 (929)
Q Consensus 621 --~~~~~~V~~s~L-~~~~~~~~~~~l~~~f~~a~----~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ 693 (929)
...+..++..+- .....+. ++++++.+. ...+.|++|||+|.+.. ...+.|+..
T Consensus 71 ~~~~d~~~~~~~~~~~~~~i~~----ir~l~~~~~~~~~~~~~kvviIdead~l~~---------------~a~naLLk~ 131 (334)
T 1a5t_A 71 GTHPDYYTLAPEKGKNTLGVDA----VREVTEKLNEHARLGGAKVVWVTDAALLTD---------------AAANALLKT 131 (334)
T ss_dssp TCCTTEEEECCCTTCSSBCHHH----HHHHHHHTTSCCTTSSCEEEEESCGGGBCH---------------HHHHHHHHH
T ss_pred CCCCCEEEEeccccCCCCCHHH----HHHHHHHHhhccccCCcEEEEECchhhcCH---------------HHHHHHHHH
Confidence 012344443210 0112233 334444443 23467999999999852 234556666
Q ss_pred HHHhcccccCccCCCcEEEEEecCCCCccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhhcccccCHHHHHHHHhhc
Q 002386 694 MDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKC 773 (929)
Q Consensus 694 ld~~~~~~~~~~~~~~VivIattn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~d~~l~~LA~~t 773 (929)
+++.. ..+++|.+++.++.+.+.+++ |+. .++|++|+.++..++++... .++++.+..++..+
T Consensus 132 lEep~---------~~~~~Il~t~~~~~l~~ti~S--Rc~-~~~~~~~~~~~~~~~L~~~~-----~~~~~~~~~l~~~s 194 (334)
T 1a5t_A 132 LEEPP---------AETWFFLATREPERLLATLRS--RCR-LHYLAPPPEQYAVTWLSREV-----TMSQDALLAALRLS 194 (334)
T ss_dssp HTSCC---------TTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHC-----CCCHHHHHHHHHHT
T ss_pred hcCCC---------CCeEEEEEeCChHhCcHHHhh--cce-eeeCCCCCHHHHHHHHHHhc-----CCCHHHHHHHHHHc
Confidence 66532 147788888888999999999 775 79999999999999888653 46788888888888
Q ss_pred CCCChhhHHHHH
Q 002386 774 DGYDAYDLEILV 785 (929)
Q Consensus 774 eG~s~~DL~~Lv 785 (929)
.| +++++..++
T Consensus 195 ~G-~~r~a~~~l 205 (334)
T 1a5t_A 195 AG-SPGAALALF 205 (334)
T ss_dssp TT-CHHHHHHTT
T ss_pred CC-CHHHHHHHh
Confidence 77 444444333
No 104
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.24 E-value=1.1e-11 Score=144.49 Aligned_cols=88 Identities=33% Similarity=0.655 Sum_probs=82.5
Q ss_pred CCccCCCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHcCCceEEEeccccccccc
Q 002386 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYI 919 (929)
Q Consensus 840 ~~~w~dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~glnfIsVkg~ELl~kyI 919 (929)
.+.|+|++|+++++..+++.+.+ .+.+..|.+.+++.+.|+|||||||||||+||+++|.+++.+|+.++++++.++|+
T Consensus 27 ~~~f~dv~G~~~~k~~l~~lv~~-l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~~ 105 (499)
T 2dhr_A 27 KVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFV 105 (499)
T ss_dssp CCCTTSSCSCHHHHHHHHHHHHH-HHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSCT
T ss_pred CCCHHHcCCcHHHHHHHHHHHHH-hhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhhh
Confidence 58899999999999999999876 56788899999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHhh
Q 002386 920 GASEQAVRR 928 (929)
Q Consensus 920 G~SEq~VRd 928 (929)
|++++.+|+
T Consensus 106 g~~~~~v~~ 114 (499)
T 2dhr_A 106 GVGAARVRD 114 (499)
T ss_dssp THHHHHHHH
T ss_pred hhHHHHHHH
Confidence 999998874
No 105
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.23 E-value=1.4e-10 Score=131.98 Aligned_cols=214 Identities=21% Similarity=0.206 Sum_probs=131.7
Q ss_pred cccccchhHHHHHHHHH-HHhcCCCchhhhhhcCCCCCceEEE--ECCCCcHHHHHHHHHHHHhccCc---cceeeEEEE
Q 002386 554 SSLSWMGTTASDVINRI-KVLLSPDSGLWFSTYHLPLPGHILI--HGPPGSGKTSLAKAVAKSLEHHK---DLVAHIVFV 627 (929)
Q Consensus 554 ~~l~g~~~~~~~i~~~l-~~ll~~~~~~~~~~~~~~~~~~vLL--~GppGtGKTtLaralA~~L~~~~---~~~~~~~~V 627 (929)
..+.|.+..++.+.+.+ ....... ...++.++| +||+|+|||++++++++.+.... .....++++
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~~---------~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~ 92 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSGA---------GLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYV 92 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTSS---------CBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCCChHHHHHHHHHHHhHHHhcCC---------CCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEE
Confidence 45678888888888866 5433210 023467999 99999999999999999875310 011567888
Q ss_pred eccccccC--------------------chhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHH
Q 002386 628 CCSRLSLE--------------------KGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALT 687 (929)
Q Consensus 628 ~~s~L~~~--------------------~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~ 687 (929)
+|...... ........+...+. ....|.+|+|||+|.+..... .. ....
T Consensus 93 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~--~~~~~~llvlDe~~~l~~~~~-----~~----~~~l 161 (412)
T 1w5s_A 93 NAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLY--VENHYLLVILDEFQSMLSSPR-----IA----AEDL 161 (412)
T ss_dssp EGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHH--HHTCEEEEEEESTHHHHSCTT-----SC----HHHH
T ss_pred ECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHH--hcCCeEEEEEeCHHHHhhccC-----cc----hHHH
Confidence 87532110 01111122222222 124588999999999863100 01 1334
Q ss_pred HHHHHHHHHhcccccCccCCCcEEEEEecCCCC---ccc---cccccCCCcceEeeCCCCcHHHHHHHHHHHHhhcc--c
Q 002386 688 KFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLE---KIP---QSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRS--L 759 (929)
Q Consensus 688 ~~L~~~ld~~~~~~~~~~~~~~VivIattn~~~---~L~---~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~--~ 759 (929)
..+.+.+....... ...++.+|++++.++ .++ +.+.+ +|...+++++++.++..++++..+.... .
T Consensus 162 ~~l~~~~~~~~~~~----~~~~v~lI~~~~~~~~~~~l~~~~~~~~~--~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~ 235 (412)
T 1w5s_A 162 YTLLRVHEEIPSRD----GVNRIGFLLVASDVRALSYMREKIPQVES--QIGFKLHLPAYKSRELYTILEQRAELGLRDT 235 (412)
T ss_dssp HHHHTHHHHSCCTT----SCCBEEEEEEEEETHHHHHHHHHCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHBCTT
T ss_pred HHHHHHHHhcccCC----CCceEEEEEEeccccHHHHHhhhcchhhh--hcCCeeeeCCCCHHHHHHHHHHHHHhcCCCC
Confidence 44444454432100 001578888876554 233 44555 5655699999999999999988765422 2
Q ss_pred ccCHHHHHHHHhhcC------CCChhhHHHHHHHHHHHHhh
Q 002386 760 ECSDEILLDVASKCD------GYDAYDLEILVDRTVHAAVG 794 (929)
Q Consensus 760 ~~~d~~l~~LA~~te------G~s~~DL~~Lv~~A~~~a~~ 794 (929)
.++++.+..++..+. | .++.+..+++.+...+..
T Consensus 236 ~~~~~~~~~i~~~~~~~~~~~G-~p~~~~~l~~~a~~~a~~ 275 (412)
T 1w5s_A 236 VWEPRHLELISDVYGEDKGGDG-SARRAIVALKMACEMAEA 275 (412)
T ss_dssp SCCHHHHHHHHHHHCGGGTSCC-CHHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHhccCCC-cHHHHHHHHHHHHHHHHH
Confidence 467888889999888 6 566777788777665543
No 106
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.18 E-value=4.1e-10 Score=145.97 Aligned_cols=157 Identities=15% Similarity=0.094 Sum_probs=100.4
Q ss_pred cccccccccchhHHHHHHHHHHHhcCC--------Cchhhhhh---------------c---CCCCCceEEEECCCCcHH
Q 002386 550 DSNVSSLSWMGTTASDVINRIKVLLSP--------DSGLWFST---------------Y---HLPLPGHILIHGPPGSGK 603 (929)
Q Consensus 550 ~~~~~~l~g~~~~~~~i~~~l~~ll~~--------~~~~~~~~---------------~---~~~~~~~vLL~GppGtGK 603 (929)
...+.+++|++..++++++.....+.. ..++.+.. + |.|.++.+||||||||||
T Consensus 1016 ~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g~GK 1095 (1706)
T 3cmw_A 1016 GSSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGK 1095 (1706)
T ss_dssp --------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSH
T ss_pred CceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCCCCh
Confidence 466788899988888777766422211 11333333 1 244555699999999999
Q ss_pred HHHHHHHHHHhccCccceeeEEEEeccccc------------cCchhh----HHHHHHHHHHHHHhcCCcEEEEcccccc
Q 002386 604 TSLAKAVAKSLEHHKDLVAHIVFVCCSRLS------------LEKGPI----IRQALSNFISEALDHAPSIVIFDNLDSI 667 (929)
Q Consensus 604 TtLaralA~~L~~~~~~~~~~~~V~~s~L~------------~~~~~~----~~~~l~~~f~~a~~~~PsVL~LDEiD~L 667 (929)
|+||++++.+...+. .+.++|++.... .++.++ .++.++.++..|+...|+++|+|++|.|
T Consensus 1096 T~la~~~~~~~~~~g---~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i~~d~~~al 1172 (1706)
T 3cmw_A 1096 TTLTLQVIAAAQREG---KTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAAL 1172 (1706)
T ss_dssp HHHHHHHHHHHHHTT---CCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGC
T ss_pred HHHHHHHHHHhhhcC---CceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeEEEeCchHhc
Confidence 999999998876542 456677776543 333344 7888999999999999999999999999
Q ss_pred ccCCC---CCCCCCCchhHHHHHHHHHHHHHHhcccccCccCCCcEEEEEecCC
Q 002386 668 ISSSS---DPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQS 718 (929)
Q Consensus 668 ~~~~~---~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~VivIattn~ 718 (929)
++.+. +.. ........++++++++.|+...... +|++|+| |+
T Consensus 1173 ~~~~~~~g~~~-~~~~~~~~r~~~q~l~~~~~~~~~~-------~v~v~~~-n~ 1217 (1706)
T 3cmw_A 1173 TPKAEIEGEIG-DSHMGLAARMMSQAMRKLAGNLKQS-------NTLLIFI-NQ 1217 (1706)
T ss_dssp CCHHHHHSCTT-CCCTTHHHHHHHHHHHHHHHHHHHT-------TCEEEEE-EC
T ss_pred Ccccccccccc-cccccHHHHHHHHHHHHHHhhhccC-------CeEEEEe-cc
Confidence 97521 111 1112455677788888888765443 4777744 44
No 107
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.17 E-value=2.9e-11 Score=128.93 Aligned_cols=89 Identities=33% Similarity=0.642 Sum_probs=81.3
Q ss_pred CCCccCCCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHcCCceEEEecccccccc
Q 002386 839 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKY 918 (929)
Q Consensus 839 ~~~~w~dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~glnfIsVkg~ELl~ky 918 (929)
+...|++++|+++++..+++...+ ..++..+.+.+++.+.|++|+||||||||+||+++|++++..|+.+++.++.+.+
T Consensus 11 ~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~~~~ 89 (254)
T 1ixz_A 11 PKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMF 89 (254)
T ss_dssp CSCCGGGCCSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHSC
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHHHHH
Confidence 358999999999999999998876 4567889999999999999999999999999999999999999999999999999
Q ss_pred cChhhHHHhh
Q 002386 919 IGASEQAVRR 928 (929)
Q Consensus 919 IG~SEq~VRd 928 (929)
.|++++.++.
T Consensus 90 ~~~~~~~i~~ 99 (254)
T 1ixz_A 90 VGVGAARVRD 99 (254)
T ss_dssp TTHHHHHHHH
T ss_pred hhHHHHHHHH
Confidence 9999887763
No 108
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.17 E-value=5.2e-12 Score=151.01 Aligned_cols=199 Identities=16% Similarity=0.127 Sum_probs=115.3
Q ss_pred CCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccccccCchhhH-HH---HHHHHHHHHHhcCCcEEEEccc
Q 002386 589 LPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPII-RQ---ALSNFISEALDHAPSIVIFDNL 664 (929)
Q Consensus 589 ~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~~~~~~~~-~~---~l~~~f~~a~~~~PsVL~LDEi 664 (929)
...++||+||||||||++|+++|+.+..... ......++..+.+...... .. .-...+..| .+.++||||+
T Consensus 326 ~~~~vLL~GppGtGKT~LAr~la~~~~r~~~--~~~~~~~~~~l~~~~~~~~~~g~~~~~~G~l~~A---~~gil~IDEi 400 (595)
T 3f9v_A 326 GDIHILIIGDPGTAKSQMLQFISRVAPRAVY--TTGKGSTAAGLTAAVVREKGTGEYYLEAGALVLA---DGGIAVIDEI 400 (595)
T ss_dssp CSCCEEEEESSCCTHHHHHHSSSTTCSCEEC--CCTTCSTTTTSEEECSSGGGTSSCSEEECHHHHH---SSSEECCTTT
T ss_pred CCcceEEECCCchHHHHHHHHHHHhCCCcee--cCCCccccccccceeeeccccccccccCCeeEec---CCCcEEeehh
Confidence 3348999999999999999999988752110 0000022233322111100 00 000112222 3469999999
Q ss_pred cccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccc----ccCccCCCcEEEEEecCCCC-------------ccccccc
Q 002386 665 DSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEK----RKSSCGIGPIAFVASAQSLE-------------KIPQSLT 727 (929)
Q Consensus 665 D~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~----~~~~~~~~~VivIattn~~~-------------~L~~~L~ 727 (929)
|.+.+ .....|...|+...-. ........++.+|+|+|+.. .++++|+
T Consensus 401 d~l~~---------------~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIaatNp~~G~~~~~~~~~~ni~l~~aLl 465 (595)
T 3f9v_A 401 DKMRD---------------EDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPKFGRYISERPVSDNINLPPTIL 465 (595)
T ss_dssp TCCCS---------------HHHHHHHHHHHSSSEEEESSSSEEEECCCCEEEEEECCTTCCSCTTSCSCTTTCSCSSSG
T ss_pred hhCCH---------------hHhhhhHHHHhCCEEEEecCCcEEEecCceEEEEEcCCcCCccCcccCchhccCCCHHHH
Confidence 98742 4456677777643211 00011113578999999876 8899999
Q ss_pred cCCCcc-eEeeCCCCcHHHHHHHHHHHHhhccc-------------------------ccCHHHHHHHHhh---------
Q 002386 728 SSGRFD-FHVQLPAPAASERKAILEHEIQRRSL-------------------------ECSDEILLDVASK--------- 772 (929)
Q Consensus 728 ~~~Rf~-~~i~l~~Pd~~eR~~IL~~~l~~~~~-------------------------~~~d~~l~~LA~~--------- 772 (929)
+ ||+ ..+..+.|+.+ ...|+++.+..+.. .++++..+.+...
T Consensus 466 ~--RFDl~~~~~~~~~~e-~~~i~~~il~~~~~~~~~~~l~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lR~~~~ 542 (595)
T 3f9v_A 466 S--RFDLIFILKDQPGEQ-DRELANYILDVHSGKSTKNIIDIDTLRKYIAYARKYVTPKITSEAKNLITDFFVEMRKKSS 542 (595)
T ss_dssp G--GCSCCEEECCTTHHH-HHHHHHHHHTTTCCCSSSSTTCCTTTHHHHHHHHHHHCCCCCCCTHHHHHHHHTTSSCSCC
T ss_pred h--hCeEEEEeCCCCCHH-HHHHHHHHHHHhhccccccCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhc
Confidence 9 997 45566777777 88888776653221 2222222333332
Q ss_pred -----cCCCChhhHHHHHHHHHHHHhhccccCCccccccccccccccccccccc
Q 002386 773 -----CDGYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMH 821 (929)
Q Consensus 773 -----teG~s~~DL~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~lt~edf~~al~ 821 (929)
..+.+++.+..+++.|...|..+ .+..++.+|+..|+.
T Consensus 543 ~~~~~~~~~s~R~l~~lirla~a~A~l~-----------~~~~V~~~dv~~Ai~ 585 (595)
T 3f9v_A 543 ETPDSPILITPRQLEALIRISEAYAKMA-----------LKAEVTREDAERAIN 585 (595)
T ss_dssp BCSSSCBCSSTTTTTHHHHHHHHHHHTT-----------SSCCSSHHHHHHHHH
T ss_pred cCCCccccccHHHHHHHHHHHHHHHHHh-----------CcCCCCHHHHHHHHH
Confidence 34667778888887776555444 235577777777654
No 109
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.17 E-value=3.6e-11 Score=139.61 Aligned_cols=80 Identities=26% Similarity=0.361 Sum_probs=70.3
Q ss_pred CCccCCCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHcC--CceEEEeccccccc
Q 002386 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACS--LRFISVKGPELLNK 917 (929)
Q Consensus 840 ~~~w~dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~g--lnfIsVkg~ELl~k 917 (929)
...|++++|++++++.+.+.+++- ..+..++.|+|||||||||||++|+++|+++| .+|+.++++++.++
T Consensus 33 ~~~~~~iiG~~~~~~~l~~~~~~~--------~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~~ 104 (456)
T 2c9o_A 33 KQAASGLVGQENAREACGVIVELI--------KSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYST 104 (456)
T ss_dssp CSEETTEESCHHHHHHHHHHHHHH--------HTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCCS
T ss_pred hhchhhccCHHHHHHHHHHHHHHH--------HhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHHH
Confidence 367999999999999998887532 23455678999999999999999999999999 99999999999999
Q ss_pred ccChhhHHHhh
Q 002386 918 YIGASEQAVRR 928 (929)
Q Consensus 918 yIG~SEq~VRd 928 (929)
|+|++|+ +++
T Consensus 105 ~~~~~~~-~~~ 114 (456)
T 2c9o_A 105 EIKKTEV-LME 114 (456)
T ss_dssp SSCHHHH-HHH
T ss_pred hhhhhHH-HHH
Confidence 9999997 664
No 110
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.15 E-value=6.9e-11 Score=115.16 Aligned_cols=88 Identities=16% Similarity=0.201 Sum_probs=62.6
Q ss_pred ccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEecccccc
Q 002386 555 SLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSL 634 (929)
Q Consensus 555 ~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~~ 634 (929)
++.|.+..++++.+.+..+.. .+.++||+||||||||++|+++++...... .+++ ++|..+..
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~-------------~~~~vll~G~~GtGKt~lA~~i~~~~~~~~---~~~v-~~~~~~~~ 64 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSE-------------TDIAVWLYGAPGTGRMTGARYLHQFGRNAQ---GEFV-YRELTPDN 64 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTT-------------CCSCEEEESSTTSSHHHHHHHHHHSSTTTT---SCCE-EEECCTTT
T ss_pred CceeCCHHHHHHHHHHHHHhC-------------CCCCEEEECCCCCCHHHHHHHHHHhCCccC---CCEE-EECCCCCc
Confidence 456788888888887765432 236799999999999999999998753222 4577 99988765
Q ss_pred CchhhHHHHHHHHHHHHHhcCCcEEEEccccccc
Q 002386 635 EKGPIIRQALSNFISEALDHAPSIVIFDNLDSII 668 (929)
Q Consensus 635 ~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~ 668 (929)
. . .....+..+ .+.+|||||+|.+.
T Consensus 65 ~--~----~~~~~~~~a---~~g~l~ldei~~l~ 89 (145)
T 3n70_A 65 A--P----QLNDFIALA---QGGTLVLSHPEHLT 89 (145)
T ss_dssp S--S----CHHHHHHHH---TTSCEEEECGGGSC
T ss_pred c--h----hhhcHHHHc---CCcEEEEcChHHCC
Confidence 4 1 123344444 34699999999984
No 111
>2yuj_A Ubiquitin fusion degradation 1-like; ubiquitin-dependent proteolytic, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.11 E-value=1.1e-09 Score=109.22 Aligned_cols=150 Identities=15% Similarity=0.156 Sum_probs=131.6
Q ss_pred ccceeCCHHHHHHHhhccccCCCCceEEEEEEeCCC-CeEEEEecCCcCCCCeeeecHhHHhhcCCCCCCEEEEEEeecC
Q 002386 13 NCFVSLPLKLIETLESTRSAHLLPQVLSLELRSRSN-QRWVVAWSGATSSSSFIEVARQFAECISLADHTIVQVRVVSNV 91 (929)
Q Consensus 13 ~~~v~lp~~l~~~l~~~~~~~~~~q~~~~e~~~~~~-~~~~~gw~g~~s~~~~iei~~~~a~~~gl~~~~~v~~~~~~~~ 91 (929)
+-=|-||++..+.|.+.+.. --...||+.... +..|+||-..++..+.|.+.+-+.++|||.+|+.|.|+.. +.
T Consensus 40 GdKI~LP~SaL~~L~~~~i~----~Pm~F~l~n~~~~r~th~GVlEFsA~EG~i~lP~wmm~~L~l~~gd~V~v~~~-~L 114 (190)
T 2yuj_A 40 GGKIIMPPSALDQLSRLNIT----YPMLFKLTNKNSDRMTHCGVLEFVADEGICYLPHWMMQNLLLEEGGLVQVESV-NL 114 (190)
T ss_dssp TTEEECCHHHHHHHHHTTCC----SSCEEEEEETTTTEEEEEEEEECCCBTTBEECCSHHHHHHTCCTTEEEEEEEE-CC
T ss_pred CCeEECcHHHHHHHHHCCCC----cCeEEEEecCCCCceEEEEEEEEecCCCeEEeCHHHHHhcCCCCCCEEEEEEe-ec
Confidence 44578999999999876543 236778887643 4799999999988899999999999999999999999965 89
Q ss_pred ccceeEEEecCCcchhHHHHhcHHHHHHHHhcccceecCCCeEeEEecCceEEEEEEeccCCCCCeEEecCCCeEEEcc
Q 002386 92 LKATLVTIEPLTEDDWEVLELNSEHAEAAILNQVRIVHEAMRFPLWLHGRTIITFHVVSTFPKKPVVQLVPGTEVAVAP 170 (929)
Q Consensus 92 ~~~~~v~veP~t~dDWEi~el~a~~le~~lL~Q~r~v~~~~~~~~~~~~~~~~~~~v~~~~p~~~~~~l~~~tev~vaP 170 (929)
|.++.|.++|+++|.|+| +-+-..||.+|-+... ++.|+++++|- ++..-+|+|..+.|+..+..+..|-||=++|
T Consensus 115 Pkgt~vklqP~~~~Fl~i-~npKavLE~~Lrnfst-LT~Gd~I~I~~-~~~~y~l~V~e~kP~~aV~IidTDl~vDf~p 190 (190)
T 2yuj_A 115 QVATYSKFQPQSPDFLDI-TNPKAVLENALRNFAC-LTTGDVIAINY-NEKIYELRVMETKPDKAVSIIECDMNVDFDA 190 (190)
T ss_dssp CCCSEEEEEESSHHHHHS-SCHHHHHHHHHTTCCE-ECTTCEEEEES-SSCEEEEEEEEESSSSSEECSSCCCEEEECC
T ss_pred CCCcEEEEEECCcccccc-ccHHHHHHHHHhcCcc-cccCCEEEEEe-CCEEEEEEEEEEcCCCeEEEEeCCEEEEecC
Confidence 999999999999999997 8899999999987554 99999999998 5688899999999998899999999998877
No 112
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.08 E-value=8.5e-11 Score=134.39 Aligned_cols=86 Identities=22% Similarity=0.341 Sum_probs=72.1
Q ss_pred cCCCCCchhhHHHHHHHHhcCCCchhhhhhCCCC-CCceeEEecCCCCcHHHHHHHHHHHcCCceEEEecccccc-cccC
Q 002386 843 WDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLR-LRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLN-KYIG 920 (929)
Q Consensus 843 w~dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr-~~sGiLLyGpPGtGKT~LA~alA~e~glnfIsVkg~ELl~-kyIG 920 (929)
..+|+|++++|+.|...+.++.+++..+...... .+.|+||+||||||||++|+++|++++.+|+.++++++.+ +|+|
T Consensus 14 d~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG 93 (444)
T 1g41_A 14 DQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVG 93 (444)
T ss_dssp HTTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CC
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceee
Confidence 3478999999999999998887777766554332 4679999999999999999999999999999999999999 6999
Q ss_pred h-hhHHHhh
Q 002386 921 A-SEQAVRR 928 (929)
Q Consensus 921 ~-SEq~VRd 928 (929)
+ +|+.+|+
T Consensus 94 ~d~e~~lr~ 102 (444)
T 1g41_A 94 KEVDSIIRD 102 (444)
T ss_dssp CCTHHHHHH
T ss_pred ccHHHHHHH
Confidence 6 8888875
No 113
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.08 E-value=6e-11 Score=115.34 Aligned_cols=111 Identities=9% Similarity=0.091 Sum_probs=73.8
Q ss_pred ccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEecccccc
Q 002386 555 SLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSL 634 (929)
Q Consensus 555 ~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~~ 634 (929)
++.|.+..++++.+.+..+.. .+.++||+||||||||++|+++++... ++++++|..+..
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~-------------~~~~vll~G~~GtGKt~lA~~i~~~~~-------~~~~~~~~~~~~ 64 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAK-------------RTSPVFLTGEAGSPFETVARYFHKNGT-------PWVSPARVEYLI 64 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHT-------------CSSCEEEEEETTCCHHHHHGGGCCTTS-------CEECCSSTTHHH
T ss_pred CceeCCHHHHHHHHHHHHHhC-------------CCCcEEEECCCCccHHHHHHHHHHhCC-------CeEEechhhCCh
Confidence 456788888888887764432 235799999999999999999987643 688899987653
Q ss_pred CchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCCCcEEEEE
Q 002386 635 EKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVA 714 (929)
Q Consensus 635 ~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~VivIa 714 (929)
.. ...++..+ .+.+|||||+|.+.. .....|...++.... .++.+|+
T Consensus 65 ~~-------~~~~~~~a---~~~~l~lDei~~l~~---------------~~q~~Ll~~l~~~~~--------~~~~iI~ 111 (143)
T 3co5_A 65 DM-------PMELLQKA---EGGVLYVGDIAQYSR---------------NIQTGITFIIGKAER--------CRVRVIA 111 (143)
T ss_dssp HC-------HHHHHHHT---TTSEEEEEECTTCCH---------------HHHHHHHHHHHHHTT--------TTCEEEE
T ss_pred Hh-------hhhHHHhC---CCCeEEEeChHHCCH---------------HHHHHHHHHHHhCCC--------CCEEEEE
Confidence 22 23445444 356999999998842 233345555554321 1367788
Q ss_pred ecCC
Q 002386 715 SAQS 718 (929)
Q Consensus 715 ttn~ 718 (929)
++|.
T Consensus 112 ~tn~ 115 (143)
T 3co5_A 112 SCSY 115 (143)
T ss_dssp EEEE
T ss_pred ecCC
Confidence 7775
No 114
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.06 E-value=1.8e-10 Score=124.72 Aligned_cols=87 Identities=33% Similarity=0.664 Sum_probs=79.9
Q ss_pred CCccCCCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHcCCceEEEeccccccccc
Q 002386 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYI 919 (929)
Q Consensus 840 ~~~w~dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~glnfIsVkg~ELl~kyI 919 (929)
...|++++|+++++..++++..+ ...+..+.+.+++.+.|++|+||||||||+||+++|.+++..|+.+++.++.+.+.
T Consensus 36 ~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~~~~ 114 (278)
T 1iy2_A 36 KVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFV 114 (278)
T ss_dssp CCCGGGSSSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHSTT
T ss_pred CCCHHHhCChHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHHHHh
Confidence 58899999999999999998775 35677889999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHh
Q 002386 920 GASEQAVR 927 (929)
Q Consensus 920 G~SEq~VR 927 (929)
|++++.++
T Consensus 115 ~~~~~~i~ 122 (278)
T 1iy2_A 115 GVGAARVR 122 (278)
T ss_dssp THHHHHHH
T ss_pred hHHHHHHH
Confidence 99988775
No 115
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.02 E-value=9.3e-11 Score=128.10 Aligned_cols=56 Identities=16% Similarity=0.233 Sum_probs=49.6
Q ss_pred CCCCCCceeEEecCCCCcHHHHHHHHHHHcCCceEEEecccccccccChhhHHHhh
Q 002386 873 APLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRR 928 (929)
Q Consensus 873 ~~lr~~sGiLLyGpPGtGKT~LA~alA~e~glnfIsVkg~ELl~kyIG~SEq~VRd 928 (929)
.+.+.+.|+|||||||||||++|+++|+++|.+|+.++++++.++|+|++++.+|+
T Consensus 31 ~~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~ 86 (293)
T 3t15_A 31 PNIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQ 86 (293)
T ss_dssp TTCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHH
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHH
Confidence 35677899999999999999999999999999999999999999999999999874
No 116
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.01 E-value=1.2e-09 Score=119.75 Aligned_cols=130 Identities=12% Similarity=0.076 Sum_probs=91.0
Q ss_pred ceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccccccCchhhHHHHHHHHHHHHHh----cCCcEEEEccccc
Q 002386 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALD----HAPSIVIFDNLDS 666 (929)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~~~~~~~~~~~l~~~f~~a~~----~~PsVL~LDEiD~ 666 (929)
.++|||||||+|||++|+++|+.++........+..++.+.- ....+.+ +++++.+.. ....|+||||+|.
T Consensus 19 ~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~-~~~id~i----r~li~~~~~~p~~~~~kvviIdead~ 93 (305)
T 2gno_A 19 ISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGE-NIGIDDI----RTIKDFLNYSPELYTRKYVIVHDCER 93 (305)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSS-CBCHHHH----HHHHHHHTSCCSSSSSEEEEETTGGG
T ss_pred cEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcC-CCCHHHH----HHHHHHHhhccccCCceEEEeccHHH
Confidence 479999999999999999999875321111134566665421 1223333 444555532 2246999999999
Q ss_pred cccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCCCcEEEEEecCCCCccccccccCCCcceEeeCCCCcHHHH
Q 002386 667 IISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASER 746 (929)
Q Consensus 667 L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~VivIattn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR 746 (929)
+.. .-.+.|+..+++... .+++|.+|+.+..+.+.+++ | .++|++|+.++.
T Consensus 94 lt~---------------~a~naLLk~LEep~~---------~t~fIl~t~~~~kl~~tI~S--R---~~~f~~l~~~~i 144 (305)
T 2gno_A 94 MTQ---------------QAANAFLKALEEPPE---------YAVIVLNTRRWHYLLPTIKS--R---VFRVVVNVPKEF 144 (305)
T ss_dssp BCH---------------HHHHHTHHHHHSCCT---------TEEEEEEESCGGGSCHHHHT--T---SEEEECCCCHHH
T ss_pred hCH---------------HHHHHHHHHHhCCCC---------CeEEEEEECChHhChHHHHc--e---eEeCCCCCHHHH
Confidence 852 335667777776432 36777777888899999999 7 789999999999
Q ss_pred HHHHHHHH
Q 002386 747 KAILEHEI 754 (929)
Q Consensus 747 ~~IL~~~l 754 (929)
.++++..+
T Consensus 145 ~~~L~~~~ 152 (305)
T 2gno_A 145 RDLVKEKI 152 (305)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99988765
No 117
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.99 E-value=6.7e-09 Score=141.01 Aligned_cols=134 Identities=16% Similarity=0.229 Sum_probs=88.7
Q ss_pred ceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccccccCchhhHHHHHHHHHHHHHhcCCcEEEEccccccccC
Q 002386 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISS 670 (929)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~ 670 (929)
.+..+.||+|||||.+++.+|+.++ .+++.++|++-... .. +..+|.-+. ..++..++||++.+-
T Consensus 605 ~gg~~~GPaGtGKTet~k~La~~lg------r~~~vfnC~~~~d~--~~----~g~i~~G~~-~~GaW~cfDEfNrl~-- 669 (3245)
T 3vkg_A 605 MGGNPFGPAGTGKTETVKALGSQLG------RFVLVFCCDEGFDL--QA----MSRIFVGLC-QCGAWGCFDEFNRLE-- 669 (3245)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTT------CCEEEEECSSCCCH--HH----HHHHHHHHH-HHTCEEEEETTTSSC--
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhC------CeEEEEeCCCCCCH--HH----HHHHHhhHh-hcCcEEEehhhhcCC--
Confidence 3467999999999999999999999 88899999875432 22 333444443 235688999999873
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHHHhccccc--------CccCCCcEEEEEecCC----CCccccccccCCCcceEeeC
Q 002386 671 SSDPEGSQPSTSVIALTKFLVDIMDEYGEKRK--------SSCGIGPIAFVASAQS----LEKIPQSLTSSGRFDFHVQL 738 (929)
Q Consensus 671 ~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~--------~~~~~~~VivIattn~----~~~L~~~L~~~~Rf~~~i~l 738 (929)
......+.+++..+...+..... ...-.....+++|.|+ ...||..|+. ||. .+.+
T Consensus 670 ---------~~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~--lFr-~v~m 737 (3245)
T 3vkg_A 670 ---------ERILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKK--LFR-SMAM 737 (3245)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHT--TEE-EEEC
T ss_pred ---------HHHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHh--hcE-EEEE
Confidence 12222333333333222221100 0111124678889884 4578999998 887 5999
Q ss_pred CCCcHHHHHHHHH
Q 002386 739 PAPAASERKAILE 751 (929)
Q Consensus 739 ~~Pd~~eR~~IL~ 751 (929)
..||.+...+|+-
T Consensus 738 ~~Pd~~~i~ei~L 750 (3245)
T 3vkg_A 738 IKPDREMIAQVML 750 (3245)
T ss_dssp CSCCHHHHHHHHH
T ss_pred eCCCHHHHHHHHH
Confidence 9999999888864
No 118
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.96 E-value=4.8e-09 Score=125.96 Aligned_cols=123 Identities=16% Similarity=0.213 Sum_probs=78.5
Q ss_pred CCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccC------------ccCCCcEEEEEecCCC--C
Q 002386 655 APSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKS------------SCGIGPIAFVASAQSL--E 720 (929)
Q Consensus 655 ~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~------------~~~~~~VivIattn~~--~ 720 (929)
.+.+|||||++.+-+ .....|++.|+...-.... .....++.+|+++|+. +
T Consensus 201 ~~gvL~LDEi~~l~~---------------~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~p~~~~vI~atn~~~~~ 265 (604)
T 3k1j_A 201 HKGVLFIDEIATLSL---------------KMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPVPCDFVLVAAGNLDTVD 265 (604)
T ss_dssp TTSEEEETTGGGSCH---------------HHHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCEECCCEEEEEECHHHHH
T ss_pred CCCEEEEechhhCCH---------------HHHHHHHHHHHcCcEEecccccccccccCCCCccceeEEEEEecCHHHHh
Confidence 456999999999732 4555666666643211000 0011257899999976 5
Q ss_pred ccccccccCCCcc---eEeeCCCC---cHHHHHHHHHHHHhh-----cccccCHHHHHHHHhhc---CCC------Chhh
Q 002386 721 KIPQSLTSSGRFD---FHVQLPAP---AASERKAILEHEIQR-----RSLECSDEILLDVASKC---DGY------DAYD 780 (929)
Q Consensus 721 ~L~~~L~~~~Rf~---~~i~l~~P---d~~eR~~IL~~~l~~-----~~~~~~d~~l~~LA~~t---eG~------s~~D 780 (929)
.++++|++ ||. ..+.|+.. +.+.+..+++.+.+. ....++++.+..+.... .|- +.++
T Consensus 266 ~l~~~l~~--R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~Li~~~~r~~g~r~~l~~~~R~ 343 (604)
T 3k1j_A 266 KMHPALRS--RIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEIVREAQKRAGRKGHLTLRLRD 343 (604)
T ss_dssp HSCHHHHH--HHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHHHHHHHHTTCSTTEEECCHHH
T ss_pred hcCHHHHH--HhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHHHHHHHHHHHhhhhccccccccCHHH
Confidence 79999999 886 45666532 345566666544432 22467888888777654 442 6899
Q ss_pred HHHHHHHHHHHHhh
Q 002386 781 LEILVDRTVHAAVG 794 (929)
Q Consensus 781 L~~Lv~~A~~~a~~ 794 (929)
+..+++.|...|..
T Consensus 344 l~~llr~A~~~A~~ 357 (604)
T 3k1j_A 344 LGGIVRAAGDIAVK 357 (604)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999998766543
No 119
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=98.96 E-value=2.8e-10 Score=148.83 Aligned_cols=98 Identities=15% Similarity=0.109 Sum_probs=60.9
Q ss_pred cccccccccccccccccccCCCCCccCCCCCchhhHHHH-----------------HHHHhcCCCchhhhhhC---CCCC
Q 002386 818 QAMHEFLPVAMRDITKTSAEGGRSGWDDVGGLTDIQNAI-----------------KEMIELPSKFPNIFAQA---PLRL 877 (929)
Q Consensus 818 ~al~~~~P~slr~v~l~~~~~~~~~w~dIgGL~~vk~~L-----------------~e~le~p~k~~~if~~~---~lr~ 877 (929)
.++....|+.++...-+.|. +.|++-..+..+.+.+ .+...+|+.++++..-. ++.+
T Consensus 655 ~a~~~~~ps~L~e~~~~~~~---v~~~~~~~i~~a~~~i~~~f~~~~~~~l~~~~~~~~~~i~TG~~eLD~llggGGl~~ 731 (2050)
T 3cmu_A 655 PNSTTGSTGSMGHTTGAMSA---IDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPM 731 (2050)
T ss_dssp CCC----------------C---CSTTHHHHHHHHHHHHHHHHCTTSEEEGGGCTTTSCCEECCSCHHHHHHHSSSSEET
T ss_pred hhcccCCHHHHHhhhccccC---CcHHHHHHHHHHHHHHHHhhccccccchhhhhhcccceeecCChHHHHHhccCCcCC
Confidence 45666678888777666664 7887633444444433 23345777788777665 5888
Q ss_pred CceeEEecCCCCcHHHHHHHHHHHc---CCceEEEecccccccc
Q 002386 878 RSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKY 918 (929)
Q Consensus 878 ~sGiLLyGpPGtGKT~LA~alA~e~---glnfIsVkg~ELl~ky 918 (929)
++.++++|+||||||+||..+|..+ +.+++.+++.+.+...
T Consensus 732 G~lilIaG~PG~GKTtLalqlA~~~a~~g~~VlyiS~Ees~~ql 775 (2050)
T 3cmu_A 732 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPI 775 (2050)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECCCcHHHH
Confidence 9999999999999999999999877 4569999998877765
No 120
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=98.91 E-value=5.8e-09 Score=136.64 Aligned_cols=81 Identities=22% Similarity=0.230 Sum_probs=54.4
Q ss_pred CCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccccccCchh----------------hHHHHHHHHHH
Q 002386 586 HLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGP----------------IIRQALSNFIS 649 (929)
Q Consensus 586 ~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~~~~~~----------------~~~~~l~~~f~ 649 (929)
+++.+..++|+||||||||+||.+++.+..... ..+.|+++.+....-.. ..+....-...
T Consensus 1077 gi~~g~~vll~G~~GtGKT~la~~~~~ea~k~G---e~~~Fit~ee~~~~L~a~~~G~dl~~l~~~~pd~~e~~~~i~~~ 1153 (2050)
T 3cmu_A 1077 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREG---KTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDA 1153 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTT---CCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHH
T ss_pred CcCCCcEEEEECCCCCCHHHHHHHHHHHHHHcC---CeEEEEEccccHHHHHHHHcCCChhHheeecCcchHHHHHHHHH
Confidence 578888999999999999999999998765443 45677777654322110 01111222222
Q ss_pred HHHhcCCcEEEEcccccccc
Q 002386 650 EALDHAPSIVIFDNLDSIIS 669 (929)
Q Consensus 650 ~a~~~~PsVL~LDEiD~L~~ 669 (929)
..+..+|++|+||++..+.+
T Consensus 1154 l~~~~~~dlvVIDsl~~L~~ 1173 (2050)
T 3cmu_A 1154 LARSGAVDVIVVDSVAALTP 1173 (2050)
T ss_dssp HHHHTCCSEEEESCGGGCCC
T ss_pred HHHhCCCCEEEECCcccccc
Confidence 23356799999999999864
No 121
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.90 E-value=9.6e-10 Score=120.39 Aligned_cols=85 Identities=22% Similarity=0.314 Sum_probs=70.7
Q ss_pred cCCCCCchhhHHHHHHHHhcCCCchhhhhhCCCC---CCceeEEecCCCCcHHHHHHHHHHHcC-------CceEEEecc
Q 002386 843 WDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLR---LRSNVLLYGPPGCGKTHIVGAAAAACS-------LRFISVKGP 912 (929)
Q Consensus 843 w~dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr---~~sGiLLyGpPGtGKT~LA~alA~e~g-------lnfIsVkg~ 912 (929)
|.+++|++.+++.|.+.+.++. ++..+...++. .+.++|||||||||||++|+++|++++ .+|+.+++.
T Consensus 30 ~~~i~G~~~~~~~l~~~~~~~~-~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~ 108 (309)
T 3syl_A 30 DRELIGLKPVKDRIRETAALLL-VERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD 108 (309)
T ss_dssp HHHSSSCHHHHHHHHHHHHHHH-HHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG
T ss_pred HHHccChHHHHHHHHHHHHHHH-hHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH
Confidence 4579999999999999998764 45555554443 345799999999999999999999883 389999999
Q ss_pred cccccccChhhHHHhh
Q 002386 913 ELLNKYIGASEQAVRR 928 (929)
Q Consensus 913 ELl~kyIG~SEq~VRd 928 (929)
++.++|+|++++.+++
T Consensus 109 ~l~~~~~g~~~~~~~~ 124 (309)
T 3syl_A 109 DLVGQYIGHTAPKTKE 124 (309)
T ss_dssp GTCCSSTTCHHHHHHH
T ss_pred HhhhhcccccHHHHHH
Confidence 9999999999987753
No 122
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.77 E-value=4.5e-07 Score=100.26 Aligned_cols=187 Identities=13% Similarity=0.128 Sum_probs=114.6
Q ss_pred cccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccccc
Q 002386 554 SSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLS 633 (929)
Q Consensus 554 ~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~ 633 (929)
..+.|.+..++.+.+.+.. ++.++|+||+|+|||++++.+++.++ +++++|....
T Consensus 12 ~~~~gR~~el~~L~~~l~~-----------------~~~v~i~G~~G~GKT~Ll~~~~~~~~--------~~~~~~~~~~ 66 (350)
T 2qen_A 12 EDIFDREEESRKLEESLEN-----------------YPLTLLLGIRRVGKSSLLRAFLNERP--------GILIDCRELY 66 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHH-----------------CSEEEEECCTTSSHHHHHHHHHHHSS--------EEEEEHHHHH
T ss_pred HhcCChHHHHHHHHHHHhc-----------------CCeEEEECCCcCCHHHHHHHHHHHcC--------cEEEEeeccc
Confidence 3456788878777764421 15699999999999999999998752 5566664321
Q ss_pred ------c-------------C-----------------c----hhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCC
Q 002386 634 ------L-------------E-----------------K----GPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSD 673 (929)
Q Consensus 634 ------~-------------~-----------------~----~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~~~~~ 673 (929)
. . . .......+..+...+....|.+|+|||++.+... .
T Consensus 67 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~--~ 144 (350)
T 2qen_A 67 AERGHITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFY--G 144 (350)
T ss_dssp HTTTCBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGB--T
T ss_pred ccccCCCHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhcc--C
Confidence 0 0 0 0112222222222222234899999999998520 0
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHhcccccCccCCCcEEEEEecCCCCccc---------cccccCCCcceEeeCCCCcHH
Q 002386 674 PEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIP---------QSLTSSGRFDFHVQLPAPAAS 744 (929)
Q Consensus 674 ~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~VivIattn~~~~L~---------~~L~~~~Rf~~~i~l~~Pd~~ 744 (929)
. .....+...|...++... ++.+|.|+.....+. ..+. +|+...+++++.+.+
T Consensus 145 ~------~~~~~~~~~L~~~~~~~~----------~~~~il~g~~~~~l~~~l~~~~~~~~l~--~~~~~~i~l~pl~~~ 206 (350)
T 2qen_A 145 S------RGGKELLALFAYAYDSLP----------NLKIILTGSEVGLLHDFLKITDYESPLY--GRIAGEVLVKPFDKD 206 (350)
T ss_dssp T------TTTHHHHHHHHHHHHHCT----------TEEEEEEESSHHHHHHHHCTTCTTSTTT--TCCCEEEECCCCCHH
T ss_pred c------cchhhHHHHHHHHHHhcC----------CeEEEEECCcHHHHHHHHhhcCCCCccc--cCccceeeCCCCCHH
Confidence 0 001244555555554421 355565554321111 1122 366668999999999
Q ss_pred HHHHHHHHHHhhcccccCHHHHHHHHhhcCCCChhhHHHHHH
Q 002386 745 ERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVD 786 (929)
Q Consensus 745 eR~~IL~~~l~~~~~~~~d~~l~~LA~~teG~s~~DL~~Lv~ 786 (929)
+..+++...+...+..++++.+..+...|.|+. .-+..++.
T Consensus 207 e~~~~l~~~~~~~~~~~~~~~~~~i~~~tgG~P-~~l~~~~~ 247 (350)
T 2qen_A 207 TSVEFLKRGFREVNLDVPENEIEEAVELLDGIP-GWLVVFGV 247 (350)
T ss_dssp HHHHHHHHHHHTTTCCCCHHHHHHHHHHHTTCH-HHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCH-HHHHHHHH
Confidence 999999988776666778888899999999865 44555443
No 123
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=98.67 E-value=1e-08 Score=115.17 Aligned_cols=82 Identities=23% Similarity=0.276 Sum_probs=62.2
Q ss_pred CCCchhhHHHHHHHHhcCCCchhhhhh--CCCCCCceeEEecCCCCcHHHHHHHHHHHcCCceEEEeccccccc-ccChh
Q 002386 846 VGGLTDIQNAIKEMIELPSKFPNIFAQ--APLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNK-YIGAS 922 (929)
Q Consensus 846 IgGL~~vk~~L~e~le~p~k~~~if~~--~~lr~~sGiLLyGpPGtGKT~LA~alA~e~glnfIsVkg~ELl~k-yIG~S 922 (929)
|.|++.+++.+...+....+....... .....+.++||+||||||||++|+++|+.++.+|+.++++++... |+|++
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~~ 96 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGED 96 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhccccccccc
Confidence 689999999999888533221111000 111256799999999999999999999999999999999999965 99997
Q ss_pred -hHHHh
Q 002386 923 -EQAVR 927 (929)
Q Consensus 923 -Eq~VR 927 (929)
+..++
T Consensus 97 ~~~~~~ 102 (363)
T 3hws_A 97 VENIIQ 102 (363)
T ss_dssp HTHHHH
T ss_pred HHHHHH
Confidence 44443
No 124
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=98.66 E-value=2.2e-07 Score=105.29 Aligned_cols=201 Identities=13% Similarity=0.150 Sum_probs=119.4
Q ss_pred ccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEecccccc
Q 002386 555 SLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSL 634 (929)
Q Consensus 555 ~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~~ 634 (929)
.+.|....++++.+.+..+... ...+||+|++|||||++|+++........ .+|+.++|..+..
T Consensus 138 ~~ig~s~~m~~l~~~i~~~a~~-------------~~~vli~Ge~GtGK~~lAr~ih~~s~r~~---~~fv~v~~~~~~~ 201 (387)
T 1ny5_A 138 EYVFESPKMKEILEKIKKISCA-------------ECPVLITGESGVGKEVVARLIHKLSDRSK---EPFVALNVASIPR 201 (387)
T ss_dssp CCCCCSHHHHHHHHHHHHHTTC-------------CSCEEEECSTTSSHHHHHHHHHHHSTTTT---SCEEEEETTTSCH
T ss_pred hhhhccHHhhHHHHHHHHhcCC-------------CCCeEEecCCCcCHHHHHHHHHHhcCCCC---CCeEEEecCCCCH
Confidence 4555666777777766554332 25699999999999999999988754322 6789999987642
Q ss_pred Cchhh---------HH---HHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccc--
Q 002386 635 EKGPI---------IR---QALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEK-- 700 (929)
Q Consensus 635 ~~~~~---------~~---~~l~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~-- 700 (929)
..... .. ..-...|..| ...+|||||++.+.. .+...|++.++...-.
T Consensus 202 ~~~~~elfg~~~g~~tga~~~~~g~~~~a---~~gtlfldei~~l~~---------------~~q~~Ll~~l~~~~~~~~ 263 (387)
T 1ny5_A 202 DIFEAELFGYEKGAFTGAVSSKEGFFELA---DGGTLFLDEIGELSL---------------EAQAKLLRVIESGKFYRL 263 (387)
T ss_dssp HHHHHHHHCBCTTSSTTCCSCBCCHHHHT---TTSEEEEESGGGCCH---------------HHHHHHHHHHHHSEECCB
T ss_pred HHHHHHhcCCCCCCCCCcccccCCceeeC---CCcEEEEcChhhCCH---------------HHHHHHHHHHhcCcEEeC
Confidence 21100 00 0001123333 245999999999842 4455566666642211
Q ss_pred ccCccCCCcEEEEEecCCCC-------ccccccccCCCcc-eEeeCCCCcH--HHHHHHHHHHHhh----cc---cccCH
Q 002386 701 RKSSCGIGPIAFVASAQSLE-------KIPQSLTSSGRFD-FHVQLPAPAA--SERKAILEHEIQR----RS---LECSD 763 (929)
Q Consensus 701 ~~~~~~~~~VivIattn~~~-------~L~~~L~~~~Rf~-~~i~l~~Pd~--~eR~~IL~~~l~~----~~---~~~~d 763 (929)
.........+.+|++||..- .+.+.|.. |+. ..+++|+... ++...++.+++.+ .+ ..+++
T Consensus 264 g~~~~~~~~~rii~at~~~l~~~~~~g~fr~dl~~--rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~ 341 (387)
T 1ny5_A 264 GGRKEIEVNVRILAATNRNIKELVKEGKFREDLYY--RLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTK 341 (387)
T ss_dssp TCCSBEECCCEEEEEESSCHHHHHHTTSSCHHHHH--HHTTEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECH
T ss_pred CCCceeeccEEEEEeCCCCHHHHHHcCCccHHHHH--hhcCCeecCCcchhccccHHHHHHHHHHHHHHHcCCCCCCCCH
Confidence 11111112578899988521 12222222 232 3456666533 4455555555543 22 34788
Q ss_pred HHHHHHHhhcCCCChhhHHHHHHHHHHH
Q 002386 764 EILLDVASKCDGYDAYDLEILVDRTVHA 791 (929)
Q Consensus 764 ~~l~~LA~~teG~s~~DL~~Lv~~A~~~ 791 (929)
+.+..+.....-.+.++|++++++|+..
T Consensus 342 ~a~~~l~~~~wpGNvreL~~~i~~~~~~ 369 (387)
T 1ny5_A 342 SAQELLLSYPWYGNVRELKNVIERAVLF 369 (387)
T ss_dssp HHHHHHHHSCCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCcHHHHHHHHHHHHHHh
Confidence 8889888877666778999999998753
No 125
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=98.61 E-value=4.5e-07 Score=102.02 Aligned_cols=197 Identities=15% Similarity=0.185 Sum_probs=121.1
Q ss_pred ccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEecccccc
Q 002386 555 SLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSL 634 (929)
Q Consensus 555 ~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~~ 634 (929)
.+.|....+.++.+.+..+... ...+|++|++||||+++|+++....... ..++.++|..+..
T Consensus 130 ~~ig~s~~~~~~~~~~~~~a~~-------------~~~vli~GesGtGKe~lAr~ih~~s~r~----~~fv~vnc~~~~~ 192 (368)
T 3dzd_A 130 EFVGEHPKILEIKRLIPKIAKS-------------KAPVLITGESGTGKEIVARLIHRYSGRK----GAFVDLNCASIPQ 192 (368)
T ss_dssp CCCCCSHHHHHHHHHHHHHHTS-------------CSCEEEECCTTSSHHHHHHHHHHHHCCC----SCEEEEESSSSCT
T ss_pred cccccchHHHHHHhhhhhhhcc-------------chhheEEeCCCchHHHHHHHHHHhcccc----CCcEEEEcccCCh
Confidence 4556667777776665443332 2459999999999999999999876533 2289999998753
Q ss_pred CchhhHHHHH--------------HHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccc
Q 002386 635 EKGPIIRQAL--------------SNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEK 700 (929)
Q Consensus 635 ~~~~~~~~~l--------------~~~f~~a~~~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~ 700 (929)
..... ..+ ...|+.| ....|||||++.+-. .+...|++.++...-.
T Consensus 193 ~~~~~--~lfg~~~g~~tga~~~~~g~~~~a---~~gtlfldei~~l~~---------------~~Q~~Ll~~l~~~~~~ 252 (368)
T 3dzd_A 193 ELAES--ELFGHEKGAFTGALTRKKGKLELA---DQGTLFLDEVGELDQ---------------RVQAKLLRVLETGSFT 252 (368)
T ss_dssp TTHHH--HHHEECSCSSSSCCCCEECHHHHT---TTSEEEEETGGGSCH---------------HHHHHHHHHHHHSEEC
T ss_pred HHHHH--HhcCccccccCCcccccCChHhhc---CCCeEEecChhhCCH---------------HHHHHHHHHHHhCCcc
Confidence 32211 000 0123333 335899999999852 4555666666643211
Q ss_pred c--cCccCCCcEEEEEecCCCC-------ccccccccCCCcc-eEeeCCCCcH--HHHHHHHHHHHhh----cc---ccc
Q 002386 701 R--KSSCGIGPIAFVASAQSLE-------KIPQSLTSSGRFD-FHVQLPAPAA--SERKAILEHEIQR----RS---LEC 761 (929)
Q Consensus 701 ~--~~~~~~~~VivIattn~~~-------~L~~~L~~~~Rf~-~~i~l~~Pd~--~eR~~IL~~~l~~----~~---~~~ 761 (929)
. ........+.+|++||..- .+.+.|.. |+. ..|++|+... ++...++.+++.+ .+ ..+
T Consensus 253 ~~g~~~~~~~~~rii~at~~~l~~~v~~g~fr~dL~~--rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~ 330 (368)
T 3dzd_A 253 RLGGNQKIEVDIRVISATNKNLEEEIKKGNFREDLYY--RLSVFQIYLPPLRERGKDVILLAEYFLKKFAKEYKKNCFEL 330 (368)
T ss_dssp CBTCCCBEECCCEEEEEESSCHHHHHHTTSSCHHHHH--HHTSEEEECCCGGGSTTHHHHHHHHHHHHHHHHTTCCCCCB
T ss_pred cCCCCcceeeeeEEEEecCCCHHHHHHcCCccHHHHH--HhCCeEEeCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCc
Confidence 1 0011112477888888421 12223332 333 3567777755 5566666666543 12 448
Q ss_pred CHHHHHHHHhhcCCCChhhHHHHHHHHHH
Q 002386 762 SDEILLDVASKCDGYDAYDLEILVDRTVH 790 (929)
Q Consensus 762 ~d~~l~~LA~~teG~s~~DL~~Lv~~A~~ 790 (929)
+++.+..|.....-.+.++|++++++|+.
T Consensus 331 ~~~a~~~L~~~~wpGNvreL~n~i~~~~~ 359 (368)
T 3dzd_A 331 SEETKEYLMKQEWKGNVRELKNLIERAVI 359 (368)
T ss_dssp CHHHHHHHHTCCCTTHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhCCCCcHHHHHHHHHHHHHH
Confidence 89999999988766677899999998864
No 126
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.61 E-value=1.8e-06 Score=95.46 Aligned_cols=167 Identities=18% Similarity=0.178 Sum_probs=97.2
Q ss_pred ceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccccc-----c--CchhhHH----------------------
Q 002386 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLS-----L--EKGPIIR---------------------- 641 (929)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~-----~--~~~~~~~---------------------- 641 (929)
+.++|+||+|+|||+|++.+++.+. ..+.+++|.... . .....+.
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~ 104 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINELN------LPYIYLDLRKFEERNYISYKDFLLELQKEINKLVKRLPSLLKALKNIQG 104 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHT------CCEEEEEGGGGTTCSCCCHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTT
T ss_pred CcEEEECCCCCCHHHHHHHHHHhcC------CCEEEEEchhhccccCCCHHHHHHHHHHHHHHHhhhhhHHHHHhcccce
Confidence 3699999999999999999999875 335677775431 0 0000000
Q ss_pred -----------------HHHHHHHHHHHhc--CCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccc
Q 002386 642 -----------------QALSNFISEALDH--APSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRK 702 (929)
Q Consensus 642 -----------------~~l~~~f~~a~~~--~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~ 702 (929)
..+..++...... .|.+|+|||++.+... .. . .+...|...++...
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~----~~---~----~~~~~l~~~~~~~~---- 169 (357)
T 2fna_A 105 IVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKL----RG---V----NLLPALAYAYDNLK---- 169 (357)
T ss_dssp EEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGC----TT---C----CCHHHHHHHHHHCT----
T ss_pred EEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhcc----Cc---h----hHHHHHHHHHHcCC----
Confidence 1122333333222 3889999999998631 00 0 12333433343321
Q ss_pred CccCCCcEEEEEecCCCCccccc-----ccc--CCCcceEeeCCCCcHHHHHHHHHHHHhhcccccCHHHHHHHHhhcCC
Q 002386 703 SSCGIGPIAFVASAQSLEKIPQS-----LTS--SGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDG 775 (929)
Q Consensus 703 ~~~~~~~VivIattn~~~~L~~~-----L~~--~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~d~~l~~LA~~teG 775 (929)
++.+|.++.....+... ... .+|+...+.+++.+.++..+++...+...+...++. ..+...|.|
T Consensus 170 ------~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~--~~i~~~t~G 241 (357)
T 2fna_A 170 ------RIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKDY--EVVYEKIGG 241 (357)
T ss_dssp ------TEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCCH--HHHHHHHCS
T ss_pred ------CeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCcH--HHHHHHhCC
Confidence 35666665543211111 001 125656899999999999999998776545544443 778888888
Q ss_pred CChhhHHHHHHH
Q 002386 776 YDAYDLEILVDR 787 (929)
Q Consensus 776 ~s~~DL~~Lv~~ 787 (929)
+.. -+..++..
T Consensus 242 ~P~-~l~~~~~~ 252 (357)
T 2fna_A 242 IPG-WLTYFGFI 252 (357)
T ss_dssp CHH-HHHHHHHH
T ss_pred CHH-HHHHHHHH
Confidence 644 45554443
No 127
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.58 E-value=8.2e-08 Score=96.46 Aligned_cols=77 Identities=22% Similarity=0.287 Sum_probs=45.9
Q ss_pred CCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccccccCchhhHHH-HHHHHHHHHHhcCCcEEEEcccc
Q 002386 587 LPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQ-ALSNFISEALDHAPSIVIFDNLD 665 (929)
Q Consensus 587 ~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~~~~~~~~~~-~l~~~f~~a~~~~PsVL~LDEiD 665 (929)
.+.+.+++|+||+||||||++++++..+....+ ..+.++++.++.......... ....++.. ...|.+|+|||++
T Consensus 35 ~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~llilDE~~ 110 (180)
T 3ec2_A 35 PEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKG--IRGYFFDTKDLIFRLKHLMDEGKDTKFLKT--VLNSPVLVLDDLG 110 (180)
T ss_dssp GGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSC--CCCCEEEHHHHHHHHHHHHHHTCCSHHHHH--HHTCSEEEEETCS
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcC--CeEEEEEHHHHHHHHHHHhcCchHHHHHHH--hcCCCEEEEeCCC
Confidence 444678999999999999999999999852222 234455555443211111000 00011111 2468899999997
Q ss_pred cc
Q 002386 666 SI 667 (929)
Q Consensus 666 ~L 667 (929)
..
T Consensus 111 ~~ 112 (180)
T 3ec2_A 111 SE 112 (180)
T ss_dssp SS
T ss_pred CC
Confidence 53
No 128
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=98.57 E-value=1.9e-08 Score=88.69 Aligned_cols=79 Identities=15% Similarity=0.185 Sum_probs=66.7
Q ss_pred eeCCCCcHHHHHHHHHHHHhhcccccCHHHHHHHHhhcCCCChhhHHHHHHHHHHHHhhccccCCccccccccccccccc
Q 002386 736 VQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDD 815 (929)
Q Consensus 736 i~l~~Pd~~eR~~IL~~~l~~~~~~~~d~~l~~LA~~teG~s~~DL~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~lt~ed 815 (929)
-+-.+||.++|.+||+.++++..+. ++.++..||..|+||+++||..+|+.|+..++++. ...|+++|
T Consensus 6 ~~~~~Pd~~~R~~IL~~~l~~~~l~-~dvdl~~LA~~T~G~SGADL~~l~~eAa~~alr~~-----------~~~I~~~d 73 (86)
T 2krk_A 6 HHHSHPNEEARLDILKIHSRKMNLT-RGINLRKIAELMPGASGAEVKGVCTEAGMYALRER-----------RVHVTQED 73 (86)
T ss_dssp CCCCCCCHHHHHHHHHHHTTTSEEC-TTCCCHHHHHTCSSCCHHHHHHHHHHHHHHHHHTT-----------CSEECHHH
T ss_pred CCCCCcCHHHHHHHHHHHHcCCCCC-cccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHc-----------CCCCCHHH
Confidence 3567999999999999999875543 34458999999999999999999999999999872 36799999
Q ss_pred ccccccccccc
Q 002386 816 FSQAMHEFLPV 826 (929)
Q Consensus 816 f~~al~~~~P~ 826 (929)
|..|++...|.
T Consensus 74 f~~Al~~v~p~ 84 (86)
T 2krk_A 74 FEMAVAKVMQK 84 (86)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHccC
Confidence 99999887663
No 129
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=98.56 E-value=5e-08 Score=110.11 Aligned_cols=78 Identities=22% Similarity=0.246 Sum_probs=55.4
Q ss_pred CCCCchhhHHHHHHHHhcCCCchhhhh-----------------hCCCCCCceeEEecCCCCcHHHHHHHHHHHcCCceE
Q 002386 845 DVGGLTDIQNAIKEMIELPSKFPNIFA-----------------QAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFI 907 (929)
Q Consensus 845 dIgGL~~vk~~L~e~le~p~k~~~if~-----------------~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~glnfI 907 (929)
++.|++++++.|...+.+..+...... ....+.+.++||+||||||||++|+++|+.++.+|+
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~ 101 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPIA 101 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 578999999999988754333322110 011235678999999999999999999999999999
Q ss_pred EEeccccc-ccccChh
Q 002386 908 SVKGPELL-NKYIGAS 922 (929)
Q Consensus 908 sVkg~ELl-~kyIG~S 922 (929)
.+++.++. .+|+|++
T Consensus 102 ~~~~~~~~~~~~~g~~ 117 (376)
T 1um8_A 102 ISDATSLTEAGYVGED 117 (376)
T ss_dssp EEEGGGCC--------
T ss_pred EecchhhhhcCcCCcc
Confidence 99999887 6788886
No 130
>3tiw_A Transitional endoplasmic reticulum ATPase; beta-barrel alpha-helix, transport protein ATPase ubiquitin ubiquitin, phosphorylation; 1.80A {Homo sapiens} PDB: 3qq8_A 3qq7_A 3qc8_A
Probab=98.56 E-value=2.1e-06 Score=86.53 Aligned_cols=157 Identities=19% Similarity=0.241 Sum_probs=125.3
Q ss_pred EEEEEeCCccccceeCCHHHHHHHhhccccCCCCceEEEEEEeCCC-CeEEEEecCCcCCCCeeeecHhHHhhcCCCCCC
Q 002386 3 LEVRVVGGVENCFVSLPLKLIETLESTRSAHLLPQVLSLELRSRSN-QRWVVAWSGATSSSSFIEVARQFAECISLADHT 81 (929)
Q Consensus 3 ~~v~~~~~~~~~~v~lp~~l~~~l~~~~~~~~~~q~~~~e~~~~~~-~~~~~gw~g~~s~~~~iei~~~~a~~~gl~~~~ 81 (929)
|.|.=...-.++.|+|++.....|.- .+-+ .|+|....+ ..+...|.+.....+.|-||...=+.+|...|+
T Consensus 26 l~V~ea~~~D~givrl~p~~m~~Lgl------~~GD-~V~I~Gkr~k~Tva~v~~~~~~~~g~Irid~~~R~N~gV~iGD 98 (187)
T 3tiw_A 26 LIVDEAINEDNSVVSLSQPKMDELQL------FRGD-TVLLKGKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGD 98 (187)
T ss_dssp EEEEECSSCCTTEEEECHHHHHHHTC------CTTC-EEEEECSTTCEEEEEEEECTTSCTTEEEECHHHHHHTTCCTTC
T ss_pred EEEcccccCCCcEEEECHHHHHHcCC------CCCC-EEEEECCCCCeEEEEEEECCCCCCCEEEeCHHHHhhcCCCCCC
Confidence 44544443447899999999999873 2333 478876543 467789988766668999999999999999999
Q ss_pred EEEEEEeecCccceeEEEecCCcchhHHHHhc--HHHHHHHHhcccceecCCCeEeEEecCceEEEEEEeccCCCCCeEE
Q 002386 82 IVQVRVVSNVLKATLVTIEPLTEDDWEVLELN--SEHAEAAILNQVRIVHEAMRFPLWLHGRTIITFHVVSTFPKKPVVQ 159 (929)
Q Consensus 82 ~v~~~~~~~~~~~~~v~veP~t~dDWEi~el~--a~~le~~lL~Q~r~v~~~~~~~~~~~~~~~~~~~v~~~~p~~~~~~ 159 (929)
.|.|+.+.+++.|+.|.+.|. .|+.+-+.-+ ..||...|+..-|.|..|..|++-. ....+.|+|+++.|+ .++.
T Consensus 99 ~V~V~~~~~v~~A~~V~LaP~-~~~i~~i~~~~~~~~lk~~l~~~~rpV~~GD~i~v~~-~~~~v~f~Vv~t~P~-~~v~ 175 (187)
T 3tiw_A 99 VISIQPCPDVKYGKRIHVLPI-DDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRG-GMRAVEFKVVETDPS-PYCI 175 (187)
T ss_dssp EEEEEECTTCEECSEEEEEEC-CCC-----CCHHHHTHHHHHTTTCCEEETTCEEEEEC-SSSEEEEEEEEEESS-SEEE
T ss_pred EEEEEECCCCCCceEEEEecc-ccchhhccchhHHHHHHHHhccCCceeeCCCEEEEcc-CCCEEEEEEEEecCC-CCEE
Confidence 999999889999999999996 4556634433 7899999998889999999999987 455789999999996 6999
Q ss_pred ecCCCeEEEc
Q 002386 160 LVPGTEVAVA 169 (929)
Q Consensus 160 l~~~tev~va 169 (929)
++++|+|.+.
T Consensus 176 V~~~T~I~~e 185 (187)
T 3tiw_A 176 VAPDTVIHCE 185 (187)
T ss_dssp CCTTCEEECC
T ss_pred ECCCcEEEec
Confidence 9999999863
No 131
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.55 E-value=1.4e-07 Score=92.23 Aligned_cols=62 Identities=15% Similarity=0.253 Sum_probs=47.2
Q ss_pred CCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccccccCchhhHHHHHHHHHHHHHhcCCcEEEEccccccc
Q 002386 589 LPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSII 668 (929)
Q Consensus 589 ~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~ 668 (929)
.+..++|+||+|+|||+|+++++..+... + ..+++++..++... +....|.+|+|||++.+.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~-g--~~~~~~~~~~~~~~---------------~~~~~~~lLilDE~~~~~ 96 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEA-G--KNAAYIDAASMPLT---------------DAAFEAEYLAVDQVEKLG 96 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTT-T--CCEEEEETTTSCCC---------------GGGGGCSEEEEESTTCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhc-C--CcEEEEcHHHhhHH---------------HHHhCCCEEEEeCccccC
Confidence 34679999999999999999999988532 1 34778888777654 112468899999998753
No 132
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=98.53 E-value=4.8e-08 Score=106.48 Aligned_cols=79 Identities=23% Similarity=0.342 Sum_probs=60.8
Q ss_pred CCCCCchhhHHHHHHHHhcCCCchhhhhhC-CCCCCceeEEecCCCCcHHHHHHHHHHHcCCceEEEecccccc-cccCh
Q 002386 844 DDVGGLTDIQNAIKEMIELPSKFPNIFAQA-PLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLN-KYIGA 921 (929)
Q Consensus 844 ~dIgGL~~vk~~L~e~le~p~k~~~if~~~-~lr~~sGiLLyGpPGtGKT~LA~alA~e~glnfIsVkg~ELl~-kyIG~ 921 (929)
+++.|.+++++.+...+..+..+....... +-+.+.++||+||||||||++|+++|+.++.+|+.++++++.+ .|+|.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~ 94 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGG
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCc
Confidence 458899999999988876532221111100 1124578999999999999999999999999999999999988 88886
Q ss_pred h
Q 002386 922 S 922 (929)
Q Consensus 922 S 922 (929)
.
T Consensus 95 ~ 95 (310)
T 1ofh_A 95 E 95 (310)
T ss_dssp S
T ss_pred c
Confidence 5
No 133
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.51 E-value=1.5e-07 Score=105.46 Aligned_cols=76 Identities=24% Similarity=0.299 Sum_probs=63.1
Q ss_pred CccCCCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHcCC--ceEEEecccccccc
Q 002386 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSL--RFISVKGPELLNKY 918 (929)
Q Consensus 841 ~~w~dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~gl--nfIsVkg~ELl~ky 918 (929)
..|+++.|.+.+++.+......- . .+..++.++|||||||||||++|+++|++++. +|+.++++++.+.+
T Consensus 41 ~~~~~ivG~~~~~~~l~~l~~~~-------~-~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~ 112 (368)
T 3uk6_A 41 QASQGMVGQLAARRAAGVVLEMI-------R-EGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLE 112 (368)
T ss_dssp SEETTEESCHHHHHHHHHHHHHH-------H-TTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSCSS
T ss_pred cchhhccChHHHHHHHHHHHHHH-------H-cCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhhcc
Confidence 45999999999998876655321 1 23334678999999999999999999999874 89999999999999
Q ss_pred cChhhH
Q 002386 919 IGASEQ 924 (929)
Q Consensus 919 IG~SEq 924 (929)
++.+|.
T Consensus 113 ~~~~~~ 118 (368)
T 3uk6_A 113 MSKTEA 118 (368)
T ss_dssp SCHHHH
T ss_pred cchhHH
Confidence 999885
No 134
>1cz4_A VCP-like ATPase; double-PSI beta-barrel, beta-CLAM, substrate recognition DOM hydrolase; NMR {Thermoplasma acidophilum} SCOP: b.52.2.3 d.31.1.1 PDB: 1cz5_A
Probab=98.51 E-value=6e-07 Score=90.64 Aligned_cols=150 Identities=17% Similarity=0.151 Sum_probs=120.7
Q ss_pred ccceeCCHHHHHHHhhccccCCCCceEEEEEEeCCCCeEEEEecCCcCC--CCeeeecHhHHhhcCCCCCCEEEEEEeec
Q 002386 13 NCFVSLPLKLIETLESTRSAHLLPQVLSLELRSRSNQRWVVAWSGATSS--SSFIEVARQFAECISLADHTIVQVRVVSN 90 (929)
Q Consensus 13 ~~~v~lp~~l~~~l~~~~~~~~~~q~~~~e~~~~~~~~~~~gw~g~~s~--~~~iei~~~~a~~~gl~~~~~v~~~~~~~ 90 (929)
.+-|+|++.....|.- ..-++ |+|... +......|.+.... .+.|-||..+-+.+|+..|+.|.|+. .+
T Consensus 21 r~ivrl~p~~m~~Lgl------~~GD~-V~I~G~-r~t~a~v~~~~~ed~~~g~Irid~~~R~N~gv~iGD~V~V~~-~~ 91 (185)
T 1cz4_A 21 MSRVRLDESSRRLLDA------EIGDV-VEIEKV-RKTVGRVYRARPEDENKGIVRIDSVMRNNCGASIGDKVKVRK-VR 91 (185)
T ss_dssp SSEEEECHHHHHTTCC------CTTCE-EEEESS-SEEEEEEEECSSTTTTTSEEECCHHHHHHHTCCTTCEEEEEE-EC
T ss_pred CCEEEECHHHHHHcCC------CCCCE-EEEEcC-CeEEEEEEEcCcCcCCCCEEEeCHHHHhccCCCCCCEEEEEE-CC
Confidence 5899999999998873 23343 677643 35788899886543 47999999999999999999999999 67
Q ss_pred CccceeEEEecCCc--chhHHHHhcHHHHHHHHhcccceecCCCeEeEEe---cCceEEEEEEeccCCCCCeEEecCCCe
Q 002386 91 VLKATLVTIEPLTE--DDWEVLELNSEHAEAAILNQVRIVHEAMRFPLWL---HGRTIITFHVVSTFPKKPVVQLVPGTE 165 (929)
Q Consensus 91 ~~~~~~v~veP~t~--dDWEi~el~a~~le~~lL~Q~r~v~~~~~~~~~~---~~~~~~~~~v~~~~p~~~~~~l~~~te 165 (929)
++.|+.|.+.|.+- ++-++-+.-..||...|+. |.|..|..|++-+ .++|.+.|+|+++.|+..+++++++|+
T Consensus 92 ~~~A~~V~l~P~~~~~~~~~~~~~~~~~l~~~l~~--rpv~~Gd~v~v~~~~~~g~~~~~f~Vv~t~P~~~~v~Vt~~T~ 169 (185)
T 1cz4_A 92 TEIAKKVTLAPIIRKDQRLKFGEGIEEYVQRALIR--RPMLEQDNISVPGLTLAGQTGLLFKVVKTLPSKVPVEIGEETK 169 (185)
T ss_dssp CCBCSEEEEEEECSTTCCSCCCSSHHHHHHHHHTT--CEECTTCEECCSSCCCSSCCCCEEEEEEESSSSSCEECCTTCE
T ss_pred CCCccEEEEecccccccccccccchHHHHHHHHCC--CcccCCCEEEEeeeccCCCeEEEEEEEEEcCCCceEEEcCCeE
Confidence 99999999999851 2333223336999999999 8999999999875 565689999999999766899999999
Q ss_pred EEEcccCC
Q 002386 166 VAVAPKRR 173 (929)
Q Consensus 166 v~vaPk~r 173 (929)
|.+.+++-
T Consensus 170 I~i~~~p~ 177 (185)
T 1cz4_A 170 IEIREEPA 177 (185)
T ss_dssp EEECSCCS
T ss_pred EEECCccc
Confidence 99987553
No 135
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=98.50 E-value=5.5e-08 Score=84.16 Aligned_cols=74 Identities=18% Similarity=0.253 Sum_probs=62.9
Q ss_pred CCCcHHHHHHHHHHHHhhcccccCHHHHHHHHhhcCCCChhhHHHHHHHHHHHHhhccccCCcccccccccccccccccc
Q 002386 739 PAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQ 818 (929)
Q Consensus 739 ~~Pd~~eR~~IL~~~l~~~~~~~~d~~l~~LA~~teG~s~~DL~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~lt~edf~~ 818 (929)
|.||.++|.+||+.++++..+. ++.++..||..|+||+|+||..+|+.|...++.+ ....++++||..
T Consensus 1 plPd~~~R~~Il~~~l~~~~~~-~~~dl~~la~~t~G~SGADi~~l~~eA~~~a~~~-----------~~~~i~~~d~~~ 68 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNLT-RGINLRKIAELMPGASGAEVKGVCTEAGMYALRE-----------RRVHVTQEDFEM 68 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEEC-TTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHT-----------TCSEECHHHHHH
T ss_pred CcCCHHHHHHHHHHHhcCCCCC-CccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh-----------CCCCCCHHHHHH
Confidence 6899999999999998865442 3456899999999999999999999999999987 235799999999
Q ss_pred cccccc
Q 002386 819 AMHEFL 824 (929)
Q Consensus 819 al~~~~ 824 (929)
|+..+.
T Consensus 69 Al~~v~ 74 (78)
T 3kw6_A 69 AVAKVM 74 (78)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 987653
No 136
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.47 E-value=8e-08 Score=113.15 Aligned_cols=82 Identities=21% Similarity=0.285 Sum_probs=64.6
Q ss_pred CccCCCCCchhhHHHHHHHHhc-CCCchhhhhhCCC---CCCceeEEecCCCCcHHHHHHHHHHHcCCceEEEecccccc
Q 002386 841 SGWDDVGGLTDIQNAIKEMIEL-PSKFPNIFAQAPL---RLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLN 916 (929)
Q Consensus 841 ~~w~dIgGL~~vk~~L~e~le~-p~k~~~if~~~~l---r~~sGiLLyGpPGtGKT~LA~alA~e~glnfIsVkg~ELl~ 916 (929)
..|+++.|.+.+++.|.+.+.. ....+..|...+. ....++||+||||||||++|+++|+++|.+|+.++++++.+
T Consensus 36 ~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~s~~~~ 115 (516)
T 1sxj_A 36 TNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRS 115 (516)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTTSCCC
T ss_pred CCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeCCCcch
Confidence 5799999999999999888763 2222333433333 25578999999999999999999999999999999999887
Q ss_pred cccChh
Q 002386 917 KYIGAS 922 (929)
Q Consensus 917 kyIG~S 922 (929)
++++++
T Consensus 116 ~~~~~~ 121 (516)
T 1sxj_A 116 KTLLNA 121 (516)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 765443
No 137
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.38 E-value=5.5e-07 Score=98.16 Aligned_cols=76 Identities=20% Similarity=0.340 Sum_probs=47.7
Q ss_pred CCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEec--cccccCchhhHHHHHHHHHHHHHhcCCcEEEEcc
Q 002386 586 HLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC--SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDN 663 (929)
Q Consensus 586 ~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~--s~L~~~~~~~~~~~l~~~f~~a~~~~PsVL~LDE 663 (929)
|+++++.++|+||||||||+||.++|...+ ..+.|++. .+.........+..+..+++...... +||||+
T Consensus 119 Gi~~gsviLI~GpPGsGKTtLAlqlA~~~G------~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~--LLVIDs 190 (331)
T 2vhj_A 119 HRYASGMVIVTGKGNSGKTPLVHALGEALG------GKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR--VIVIDS 190 (331)
T ss_dssp EEEESEEEEEECSCSSSHHHHHHHHHHHHH------TTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS--EEEEEC
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHhCC------CCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC--EEEEec
Confidence 355566789999999999999999998722 12223333 22211111344555555555554443 999999
Q ss_pred cccccc
Q 002386 664 LDSIIS 669 (929)
Q Consensus 664 iD~L~~ 669 (929)
++.+..
T Consensus 191 I~aL~~ 196 (331)
T 2vhj_A 191 LKNVIG 196 (331)
T ss_dssp CTTTC-
T ss_pred cccccc
Confidence 999864
No 138
>3qwz_A Transitional endoplasmic reticulum ATPase; UBX, P97 binding, transport protein; HET: MLY; 2.00A {Homo sapiens} PDB: 2pjh_B
Probab=98.37 E-value=3.8e-06 Score=86.18 Aligned_cols=161 Identities=18% Similarity=0.198 Sum_probs=127.4
Q ss_pred EEEEEeCCccccceeCCHHHHHHHhhccccCCCCceEEEEEEeCCC-CeEEEEecCCcCCCCeeeecHhHHhhcCCCCCC
Q 002386 3 LEVRVVGGVENCFVSLPLKLIETLESTRSAHLLPQVLSLELRSRSN-QRWVVAWSGATSSSSFIEVARQFAECISLADHT 81 (929)
Q Consensus 3 ~~v~~~~~~~~~~v~lp~~l~~~l~~~~~~~~~~q~~~~e~~~~~~-~~~~~gw~g~~s~~~~iei~~~~a~~~gl~~~~ 81 (929)
|.|.=...-.++.|+|++.....|.- .+-+ .|+|....+ ..+...|.+.....+.|-||...=+.+|...|+
T Consensus 29 l~V~ea~~~Drgivrl~p~~m~~Lgl------~~GD-~V~I~Gkr~k~Tva~v~~~~~~~~g~Irid~~~R~N~gV~iGD 101 (211)
T 3qwz_A 29 LIVDEAINEDNSVVSLSQPKMDELQL------FRGD-TVLLKGXKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGD 101 (211)
T ss_dssp EEEEECSCCCTTEEEECHHHHHHHTC------CBTC-EEEEECSTTCEEEEEEEECTTSCTTEEEECHHHHHHTTCCTTC
T ss_pred eEEcccccCCCcEEEECHHHHHHcCC------CCCC-EEEEeCCCCCcEEEEEEeCCCCCCCEEEeCHHHHhhcCCCCCC
Confidence 44444333347999999999999873 2333 578876543 467788987666668999999999999999999
Q ss_pred EEEEEEeecCccceeEEEecCCcchhHHHHh--cHHHHHHHHhcccceecCCCeEeEEecCceEEEEEEeccCCCCCeEE
Q 002386 82 IVQVRVVSNVLKATLVTIEPLTEDDWEVLEL--NSEHAEAAILNQVRIVHEAMRFPLWLHGRTIITFHVVSTFPKKPVVQ 159 (929)
Q Consensus 82 ~v~~~~~~~~~~~~~v~veP~t~dDWEi~el--~a~~le~~lL~Q~r~v~~~~~~~~~~~~~~~~~~~v~~~~p~~~~~~ 159 (929)
.|.|+.+.+++.|+.|.+.|.+ |+.+-+.- -..||...|+.--|.|..|..|++-. ....+.|+|+++.|+ .++.
T Consensus 102 ~V~V~~~~~v~~A~~V~LaP~~-~~i~~i~~~~~~~~lk~~l~~~~rPV~~GD~i~v~~-~~~~v~f~Vv~t~P~-g~vi 178 (211)
T 3qwz_A 102 VISIQPCPDVKYGKRIHVLPID-DTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRG-GMRAVEFXVVETDPS-PYCI 178 (211)
T ss_dssp EEEEEECTTCCBCSEEEEEEBG-GGCTTCCSCHHHHTTHHHHTTCCEEEETTCEEECCC-TTSCCEEEEEEEESS-SEEE
T ss_pred EEEEEECCCCCCceEEEEeccC-cchhccCchhHHHHHHHHHhhCCceeecCCEEEEcc-CCcEEEEEEEeecCC-CCEE
Confidence 9999998899999999999953 34442322 26889999998889999999998876 455689999999996 5999
Q ss_pred ecCCCeEEEcccCC
Q 002386 160 LVPGTEVAVAPKRR 173 (929)
Q Consensus 160 l~~~tev~vaPk~r 173 (929)
++++|+|.+..++=
T Consensus 179 V~~~T~I~~~~~pv 192 (211)
T 3qwz_A 179 VAPDTVIHCEGEPI 192 (211)
T ss_dssp ECTTCEEECCSCCB
T ss_pred ECCCcEEEEcCccc
Confidence 99999999976543
No 139
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=98.36 E-value=1.5e-07 Score=111.32 Aligned_cols=80 Identities=23% Similarity=0.347 Sum_probs=55.7
Q ss_pred CccCCCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHcCCceEEEecccccc----
Q 002386 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLN---- 916 (929)
Q Consensus 841 ~~w~dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~glnfIsVkg~ELl~---- 916 (929)
.-+.++.|++++++.+.+.+.+...... + .+..+||+||||||||++|+++|+.++.+|+.|++..+..
T Consensus 78 ~l~~di~G~~~vk~~i~~~~~l~~~~~~------~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~ 150 (543)
T 3m6a_A 78 LLDEEHHGLEKVKERILEYLAVQKLTKS------L-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEI 150 (543)
T ss_dssp THHHHCSSCHHHHHHHHHHHHHHHHSSS------C-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC-------
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHhccc------C-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhh
Confidence 4577899999999999887654321111 1 4568999999999999999999999999999998877655
Q ss_pred -----cccChhhHHHh
Q 002386 917 -----KYIGASEQAVR 927 (929)
Q Consensus 917 -----kyIG~SEq~VR 927 (929)
+|+|+.++.++
T Consensus 151 ~g~~~~~ig~~~~~~~ 166 (543)
T 3m6a_A 151 RGHRRTYVGAMPGRII 166 (543)
T ss_dssp -------------CHH
T ss_pred hhHHHHHhccCchHHH
Confidence 89999887765
No 140
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.34 E-value=3.8e-07 Score=97.96 Aligned_cols=52 Identities=35% Similarity=0.489 Sum_probs=43.2
Q ss_pred hhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHcCCceEEEecccccccccChhh
Q 002386 869 IFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASE 923 (929)
Q Consensus 869 if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~glnfIsVkg~ELl~kyIG~SE 923 (929)
.+...+...+.++|||||||||||++|+++|++++.+|+.+++++ .++|.++
T Consensus 55 ~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~---~~~g~~~ 106 (272)
T 1d2n_A 55 QTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPD---KMIGFSE 106 (272)
T ss_dssp HHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGG---GCTTCCH
T ss_pred HHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHH---HhcCCch
Confidence 333444567789999999999999999999999999999999987 4566555
No 141
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.34 E-value=5.5e-07 Score=89.91 Aligned_cols=74 Identities=28% Similarity=0.407 Sum_probs=60.0
Q ss_pred CccCCCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHc----------CCceEEEe
Q 002386 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC----------SLRFISVK 910 (929)
Q Consensus 841 ~~w~dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~----------glnfIsVk 910 (929)
..|+++.|.++..+.+.+.+.. ..+.++||+||||||||++|+++|+++ +.+++.++
T Consensus 19 ~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (195)
T 1jbk_A 19 GKLDPVIGRDEEIRRTIQVLQR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALD 85 (195)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEEC
T ss_pred ccccccccchHHHHHHHHHHhc-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEee
Confidence 4688888988877777766532 235689999999999999999999986 88999999
Q ss_pred ccccc--ccccChhhHHHh
Q 002386 911 GPELL--NKYIGASEQAVR 927 (929)
Q Consensus 911 g~ELl--~kyIG~SEq~VR 927 (929)
+.+++ .++.|..++.++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~ 104 (195)
T 1jbk_A 86 MGALVAGAKYRGEFEERLK 104 (195)
T ss_dssp HHHHHTTTCSHHHHHHHHH
T ss_pred HHHHhccCCccccHHHHHH
Confidence 99888 577787777654
No 142
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=98.30 E-value=2.2e-07 Score=82.33 Aligned_cols=75 Identities=13% Similarity=0.122 Sum_probs=61.6
Q ss_pred cHHHHHHHHHHHHhhcccccCHHHHHHHHhhcCCCChhhHHHHHHHHHHHHhhccccCCccccccccccccccccccccc
Q 002386 742 AASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMH 821 (929)
Q Consensus 742 d~~eR~~IL~~~l~~~~~~~~d~~l~~LA~~teG~s~~DL~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~lt~edf~~al~ 821 (929)
|.++|.+||+.++++..+. ++.++..||..|+||+|+||..+|+.|...++++. ...++.+||..|+.
T Consensus 2 d~~~R~~Il~~~~~~~~~~-~dvdl~~lA~~t~G~SGADl~~l~~eAa~~a~r~~-----------~~~i~~~df~~Al~ 69 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMSVE-RGIRWELISRLCPNSTGAELRSVCTEAGMFAIRAR-----------RKVATEKDFLKAVD 69 (88)
T ss_dssp CSSHHHHHHHHHHTTSCBC-SCCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHS-----------CSSBCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHCCCCCC-CccCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhc-----------cccCCHHHHHHHHH
Confidence 5678999999998875543 44568999999999999999999999999999872 25699999999999
Q ss_pred ccccccc
Q 002386 822 EFLPVAM 828 (929)
Q Consensus 822 ~~~P~sl 828 (929)
...+...
T Consensus 70 ~v~~~~~ 76 (88)
T 3vlf_B 70 KVISGYK 76 (88)
T ss_dssp HHTC---
T ss_pred HHhcCcc
Confidence 8877543
No 143
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.29 E-value=6.2e-07 Score=91.92 Aligned_cols=131 Identities=20% Similarity=0.224 Sum_probs=74.0
Q ss_pred eEEEECCCCcHHHHHHHHHHHHhcc----CccceeeEEEEeccccccCch----------hhHHH--HHHHHHHHH--Hh
Q 002386 592 HILIHGPPGSGKTSLAKAVAKSLEH----HKDLVAHIVFVCCSRLSLEKG----------PIIRQ--ALSNFISEA--LD 653 (929)
Q Consensus 592 ~vLL~GppGtGKTtLaralA~~L~~----~~~~~~~~~~V~~s~L~~~~~----------~~~~~--~l~~~f~~a--~~ 653 (929)
..|++|+||||||++|..++..... ..+ ...+.+.++.++..... ..+.. ....++..+ ..
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g-~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~ 85 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMANDEMFKPDENG-IRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKKPE 85 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCGGGSCCTTS-CCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTSGG
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhhcccccC-ceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhccc
Confidence 5899999999999999887655420 111 02233445554432111 00000 011222221 23
Q ss_pred cCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCCCcEEEEEecCCCCccccccccCCCcc
Q 002386 654 HAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFD 733 (929)
Q Consensus 654 ~~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~VivIattn~~~~L~~~L~~~~Rf~ 733 (929)
..++||+|||++.+++.+.+. .... +++. .+.. .+ ..++.+|.++++++.|+..++. |++
T Consensus 86 ~~~~vliIDEAq~l~~~~~~~--~e~~----rll~----~l~~---~r-----~~~~~iil~tq~~~~l~~~lr~--ri~ 145 (199)
T 2r2a_A 86 NIGSIVIVDEAQDVWPARSAG--SKIP----ENVQ----WLNT---HR-----HQGIDIFVLTQGPKLLDQNLRT--LVR 145 (199)
T ss_dssp GTTCEEEETTGGGTSBCCCTT--CCCC----HHHH----GGGG---TT-----TTTCEEEEEESCGGGBCHHHHT--TEE
T ss_pred cCceEEEEEChhhhccCcccc--chhH----HHHH----HHHh---cC-----cCCeEEEEECCCHHHHhHHHHH--Hhh
Confidence 557899999999997533221 1110 2221 1211 11 1146778888889999999988 999
Q ss_pred eEeeCCCCcH
Q 002386 734 FHVQLPAPAA 743 (929)
Q Consensus 734 ~~i~l~~Pd~ 743 (929)
.++++.+|..
T Consensus 146 ~~~~l~~~~~ 155 (199)
T 2r2a_A 146 KHYHIASNKM 155 (199)
T ss_dssp EEEEEEECSS
T ss_pred eEEEEcCccc
Confidence 9999887643
No 144
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=98.28 E-value=1e-05 Score=92.18 Aligned_cols=192 Identities=17% Similarity=0.087 Sum_probs=106.5
Q ss_pred eEEEECCCCcHHHHHHHHH-HHHhccCccceeeEEEEec--c---ccccCchhhH-HHHHHHHHHHHHhcCCcEEEEccc
Q 002386 592 HILIHGPPGSGKTSLAKAV-AKSLEHHKDLVAHIVFVCC--S---RLSLEKGPII-RQALSNFISEALDHAPSIVIFDNL 664 (929)
Q Consensus 592 ~vLL~GppGtGKTtLaral-A~~L~~~~~~~~~~~~V~~--s---~L~~~~~~~~-~~~l~~~f~~a~~~~PsVL~LDEi 664 (929)
|+||.|+||| ||++||++ ++.+. + ..++.. + .+.+...+.. ...-...+..| ...++|+||+
T Consensus 241 hVLL~G~PGt-KS~Lar~i~~~i~p-R------~~ft~g~~ss~~gLt~s~r~~tG~~~~~G~l~LA---dgGvl~lDEI 309 (506)
T 3f8t_A 241 HVLLAGYPVV-CSEILHHVLDHLAP-R------GVYVDLRRTELTDLTAVLKEDRGWALRAGAAVLA---DGGILAVDHL 309 (506)
T ss_dssp CEEEESCHHH-HHHHHHHHHHHTCS-S------EEEEEGGGCCHHHHSEEEEESSSEEEEECHHHHT---TTSEEEEECC
T ss_pred eEEEECCCCh-HHHHHHHHHHHhCC-C------eEEecCCCCCccCceEEEEcCCCcccCCCeeEEc---CCCeeehHhh
Confidence 7999999999 99999999 66442 1 112211 0 0110000000 00000012222 2359999999
Q ss_pred cccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCCCcEEEEEecCCCC-----------ccccccccCCCcc
Q 002386 665 DSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLE-----------KIPQSLTSSGRFD 733 (929)
Q Consensus 665 D~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~VivIattn~~~-----------~L~~~L~~~~Rf~ 733 (929)
+.+- ......|++.|++-.-.-.+..-..++.||||+|+.. .|++++++ ||+
T Consensus 310 n~~~---------------~~~qsaLlEaMEe~~VtI~G~~lparf~VIAA~NP~~~yd~~~s~~~~~Lp~alLD--RFD 372 (506)
T 3f8t_A 310 EGAP---------------EPHRWALMEAMDKGTVTVDGIALNARCAVLAAINPGEQWPSDPPIARIDLDQDFLS--HFD 372 (506)
T ss_dssp TTCC---------------HHHHHHHHHHHHHSEEEETTEEEECCCEEEEEECCCC--CCSCGGGGCCSCHHHHT--TCS
T ss_pred hhCC---------------HHHHHHHHHHHhCCcEEECCEEcCCCeEEEEEeCcccccCCCCCccccCCChHHhh--hee
Confidence 9874 2566777777875431111111123589999999875 67888999 997
Q ss_pred eEe-eCCCCcHHHH---------HHHHHHH---Hh--hcccccCHHHHHHHHh-----------------hcCCCChhhH
Q 002386 734 FHV-QLPAPAASER---------KAILEHE---IQ--RRSLECSDEILLDVAS-----------------KCDGYDAYDL 781 (929)
Q Consensus 734 ~~i-~l~~Pd~~eR---------~~IL~~~---l~--~~~~~~~d~~l~~LA~-----------------~teG~s~~DL 781 (929)
..+ .+..|+.+.- .+.++.+ ++ .....++++..+.+.. ..-|.+++.+
T Consensus 373 Li~i~~d~pd~e~d~e~~~~~ls~e~L~~yi~~ar~~~~~p~ls~ea~~yI~~~y~~tR~~~~~~~~~~~~~~giSpR~l 452 (506)
T 3f8t_A 373 LIAFLGVDPRPGEPEEQDTEVPSYTLLRRYLLYAIREHPAPELTEEARKRLEHWYETRREEVEERLGMGLPTLPVTRRQL 452 (506)
T ss_dssp EEEETTC--------------CCHHHHHHHHHHHHHHCSCCEECHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCHHHH
T ss_pred eEEEecCCCChhHhhcccCCCCCHHHHHHHHHHHHhcCCCceeCHHHHHHHHHHHHHHhcCcccccccccccccccHHHH
Confidence 544 4555554331 1122222 22 1134566665433221 1347788999
Q ss_pred HHHHHHHHHHHhhccccCCcccccccccccccccccccccc
Q 002386 782 EILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHE 822 (929)
Q Consensus 782 ~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~lt~edf~~al~~ 822 (929)
..|++.|--.|..+ .+..++.+|+..|+.=
T Consensus 453 eaLiRlA~A~A~L~-----------gR~~V~~eDV~~Ai~L 482 (506)
T 3f8t_A 453 ESVERLAKAHARMR-----------LSDDVEPEDVDIAAEL 482 (506)
T ss_dssp HHHHHHHHHHHHHT-----------TCSEECHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-----------CcCCCCHHHHHHHHHH
Confidence 99998887666655 3467888998877654
No 145
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.28 E-value=7.7e-07 Score=90.93 Aligned_cols=73 Identities=22% Similarity=0.319 Sum_probs=45.8
Q ss_pred ceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccccccCchhhHH-HHHHHHHHHHHhcCCcEEEEccccccc
Q 002386 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIR-QALSNFISEALDHAPSIVIFDNLDSII 668 (929)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~~~~~~~~~-~~l~~~f~~a~~~~PsVL~LDEiD~L~ 668 (929)
.+++|+||+|||||++|++++..+.... ..+.+++|..+......... ..+...+.... .+.+|||||++...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~lilDei~~~~ 128 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRN---VSSLIVYVPELFRELKHSLQDQTMNEKLDYIK--KVPVLMLDDLGAEA 128 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTT---CCEEEEEHHHHHHHHHHC---CCCHHHHHHHH--HSSEEEEEEECCC-
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcC---CeEEEEEhHHHHHHHHHHhccchHHHHHHHhc--CCCEEEEcCCCCCc
Confidence 6899999999999999999999985432 45677787654321111000 00112222222 34699999997653
No 146
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=98.27 E-value=2.7e-07 Score=80.72 Aligned_cols=75 Identities=15% Similarity=0.203 Sum_probs=61.9
Q ss_pred cHHHHHHHHHHHHhhcccccCHHHHHHHHhhcCCCChhhHHHHHHHHHHHHhhccccCCccccccccccccccccccccc
Q 002386 742 AASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMH 821 (929)
Q Consensus 742 d~~eR~~IL~~~l~~~~~~~~d~~l~~LA~~teG~s~~DL~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~lt~edf~~al~ 821 (929)
|.++|.+||+.++++..+. ++.++..||..|+||+|+||..+|+.|...++++. ...++++||..|+.
T Consensus 2 d~~~R~~Il~~~l~~~~~~-~~vdl~~la~~t~G~SGADi~~l~~eA~~~a~~~~-----------~~~i~~~df~~Al~ 69 (83)
T 3aji_B 2 DRRQKRLIFSTITSKMNLS-EEVDLEDYVARPDKISGADINSICQESGMLAVREN-----------RYIVLAKDFEKAYK 69 (83)
T ss_dssp CHHHHHHHHHHHHTTSCBC-TTCCTHHHHTSSCCCCHHHHHHHHHHHHHGGGTSC-----------CSSBCHHHHHHHHH
T ss_pred CHHHHHHHHHHHhCCCCCC-cccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc-----------cCCcCHHHHHHHHH
Confidence 6789999999998865543 34568999999999999999999999999988762 36799999999999
Q ss_pred ccccccc
Q 002386 822 EFLPVAM 828 (929)
Q Consensus 822 ~~~P~sl 828 (929)
...|+..
T Consensus 70 ~~~ps~~ 76 (83)
T 3aji_B 70 TVIKKDE 76 (83)
T ss_dssp HHCC---
T ss_pred HHccCch
Confidence 9888643
No 147
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=98.26 E-value=9.3e-06 Score=90.18 Aligned_cols=165 Identities=12% Similarity=0.038 Sum_probs=107.6
Q ss_pred ceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccccccCchhhHHHHHHHHHHHHHhcCCcEEEEccccc-ccc
Q 002386 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDS-IIS 669 (929)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~-L~~ 669 (929)
..+|||||+|.||++.++.+++.+..........+.++. ..+.+..+..+-....-....|++|||+|. +..
T Consensus 19 ~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~plf~~~kvvii~~~~~kl~~ 91 (343)
T 1jr3_D 19 AAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDP-------NTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNA 91 (343)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECCT-------TCCHHHHHHHHHHHHHCCSCEEEEEECCSSCCCT
T ss_pred cEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEecC-------CCCHHHHHHHhcCcCCccCCeEEEEECCCCCCCh
Confidence 569999999999999999999987532211112222321 123344343333333334567999999988 531
Q ss_pred CCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCCCcEEEEEecCC-----CCccccccccCCCcceEeeCCCCcHH
Q 002386 670 SSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQS-----LEKIPQSLTSSGRFDFHVQLPAPAAS 744 (929)
Q Consensus 670 ~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~VivIattn~-----~~~L~~~L~~~~Rf~~~i~l~~Pd~~ 744 (929)
...+.|...+++.... .++++++++. ...+.+.+.+ |.. ++.+.+++..
T Consensus 92 ---------------~~~~aLl~~le~p~~~--------~~~il~~~~~~~~~~~~k~~~~i~s--r~~-~~~~~~l~~~ 145 (343)
T 1jr3_D 92 ---------------AINEQLLTLTGLLHDD--------LLLIVRGNKLSKAQENAAWFTALAN--RSV-QVTCQTPEQA 145 (343)
T ss_dssp ---------------THHHHHHHHHTTCBTT--------EEEEEEESCCCTTTTTSHHHHHHTT--TCE-EEEECCCCTT
T ss_pred ---------------HHHHHHHHHHhcCCCC--------eEEEEEcCCCChhhHhhHHHHHHHh--Cce-EEEeeCCCHH
Confidence 2334455666554321 2444444331 2356677777 543 7899999999
Q ss_pred HHHHHHHHHHhhcccccCHHHHHHHHhhcCCCChhhHHHHHHHHH
Q 002386 745 ERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTV 789 (929)
Q Consensus 745 eR~~IL~~~l~~~~~~~~d~~l~~LA~~teG~s~~DL~~Lv~~A~ 789 (929)
+..+.++..++..++.++++.+..++..++| +.+++...++...
T Consensus 146 ~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g-dl~~~~~elekl~ 189 (343)
T 1jr3_D 146 QLPRWVAARAKQLNLELDDAANQVLCYCYEG-NLLALAQALERLS 189 (343)
T ss_dssp HHHHHHHHHHHHTTCEECHHHHHHHHHSSTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHhch-HHHHHHHHHHHHH
Confidence 9999999999989999999999999998877 5556666555554
No 148
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.24 E-value=9.4e-07 Score=88.06 Aligned_cols=74 Identities=28% Similarity=0.411 Sum_probs=58.4
Q ss_pred CccCCCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHc----------CCceEEEe
Q 002386 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC----------SLRFISVK 910 (929)
Q Consensus 841 ~~w~dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~----------glnfIsVk 910 (929)
..++++.|.+...+.+.+.+.- ..+.++||+||||||||++|+++|+++ +.+++.++
T Consensus 19 ~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (187)
T 2p65_A 19 GKLDPVIGRDTEIRRAIQILSR-------------RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLD 85 (187)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEEC
T ss_pred cccchhhcchHHHHHHHHHHhC-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEe
Confidence 4678888888877777666531 235689999999999999999999987 88899999
Q ss_pred ccccc--ccccChhhHHHh
Q 002386 911 GPELL--NKYIGASEQAVR 927 (929)
Q Consensus 911 g~ELl--~kyIG~SEq~VR 927 (929)
..+++ .+|.|..++.++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~ 104 (187)
T 2p65_A 86 LSSLIAGAKYRGDFEERLK 104 (187)
T ss_dssp HHHHHHHCCSHHHHHHHHH
T ss_pred HHHhhcCCCchhHHHHHHH
Confidence 88877 456777776654
No 149
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.23 E-value=1.1e-06 Score=97.25 Aligned_cols=66 Identities=23% Similarity=0.353 Sum_probs=55.5
Q ss_pred CccCCCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHcCCceEEEecccc
Q 002386 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPEL 914 (929)
Q Consensus 841 ~~w~dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~glnfIsVkg~EL 914 (929)
..|+++.|.+.+++.+.+.+..... +-....++||+||||||||++|+++|++++.+|+.++++.+
T Consensus 26 ~~~~~iiG~~~~~~~l~~~l~~~~~--------~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~ 91 (338)
T 3pfi_A 26 SNFDGYIGQESIKKNLNVFIAAAKK--------RNECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMI 91 (338)
T ss_dssp CSGGGCCSCHHHHHHHHHHHHHHHH--------TTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGC
T ss_pred CCHHHhCChHHHHHHHHHHHHHHHh--------cCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhc
Confidence 4799999999999999988864321 11235679999999999999999999999999999999875
No 150
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.17 E-value=1.4e-06 Score=101.21 Aligned_cols=71 Identities=28% Similarity=0.410 Sum_probs=51.0
Q ss_pred CccCCCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHc----------CCceEEEe
Q 002386 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC----------SLRFISVK 910 (929)
Q Consensus 841 ~~w~dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~----------glnfIsVk 910 (929)
..++++.|.+...+.+.+.+.- +...++||+||||||||++|+++|+.+ +.+|+.++
T Consensus 177 ~~ld~iiGr~~~i~~l~~~l~r-------------~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~ 243 (468)
T 3pxg_A 177 DSLDPVIGRSKEIQRVIEVLSR-------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLD 243 (468)
T ss_dssp SCSCCCCCCHHHHHHHHHHHHC-------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-
T ss_pred CCCCCccCcHHHHHHHHHHHhc-------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEee
Confidence 4688899999988888877642 234689999999999999999999996 88899999
Q ss_pred cccccccccChhhHHHh
Q 002386 911 GPELLNKYIGASEQAVR 927 (929)
Q Consensus 911 g~ELl~kyIG~SEq~VR 927 (929)
+. ++|.|+.|..++
T Consensus 244 ~~---~~~~g~~e~~~~ 257 (468)
T 3pxg_A 244 MG---TKYRGEFEDRLK 257 (468)
T ss_dssp ------------CTTHH
T ss_pred CC---ccccchHHHHHH
Confidence 88 899999887665
No 151
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.17 E-value=2.5e-06 Score=87.02 Aligned_cols=29 Identities=17% Similarity=0.422 Sum_probs=25.8
Q ss_pred CCCCceEEEECCCCcHHHHHHHHHHHHhc
Q 002386 587 LPLPGHILIHGPPGSGKTSLAKAVAKSLE 615 (929)
Q Consensus 587 ~~~~~~vLL~GppGtGKTtLaralA~~L~ 615 (929)
.|...++||+||||||||++|.++|+.+.
T Consensus 55 iPkkn~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 55 TPKKNCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp CTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 55556899999999999999999999985
No 152
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.08 E-value=3.1e-06 Score=81.96 Aligned_cols=60 Identities=18% Similarity=0.185 Sum_probs=44.3
Q ss_pred CCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHc---CCceEEEeccccccc
Q 002386 846 VGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNK 917 (929)
Q Consensus 846 IgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~---glnfIsVkg~ELl~k 917 (929)
+.|-....+.+.+.+... .+.+.++||+||||||||++|++++..+ +.+|+ +++.++...
T Consensus 3 iiG~s~~~~~~~~~~~~~-----------a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~ 65 (145)
T 3n70_A 3 LIGRSEWINQYRRRLQQL-----------SETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA 65 (145)
T ss_dssp -CCSSHHHHHHHHHHHHH-----------TTCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS
T ss_pred ceeCCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc
Confidence 455556655565555421 1234679999999999999999999987 78999 999887653
No 153
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.05 E-value=5.3e-06 Score=91.26 Aligned_cols=61 Identities=20% Similarity=0.215 Sum_probs=53.0
Q ss_pred CccCCCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHcCCceEEEeccc
Q 002386 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPE 913 (929)
Q Consensus 841 ~~w~dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~glnfIsVkg~E 913 (929)
..|+++.|.+++++.|++.+. .-+.+..+|++||||||||++|+++|++++.+|+.+++++
T Consensus 23 ~~~~~ivg~~~~~~~l~~~l~------------~~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~ 83 (324)
T 3u61_B 23 STIDECILPAFDKETFKSITS------------KGKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSD 83 (324)
T ss_dssp CSTTTSCCCHHHHHHHHHHHH------------TTCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTT
T ss_pred CCHHHHhCcHHHHHHHHHHHH------------cCCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccc
Confidence 478999999999999988876 1234567888999999999999999999999999999876
No 154
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=98.04 E-value=7.9e-07 Score=86.02 Aligned_cols=62 Identities=19% Similarity=0.174 Sum_probs=46.4
Q ss_pred CCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHcCCceEEEecccccccc
Q 002386 845 DVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKY 918 (929)
Q Consensus 845 dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~glnfIsVkg~ELl~ky 918 (929)
++.|.+...+.+.+.+... . +...++||+||||||||++|++++.+++ +|+.+++.++...+
T Consensus 5 ~~iG~s~~~~~l~~~~~~~-------~----~~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~~ 66 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAA-------A----KRTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLIDM 66 (143)
T ss_dssp ---CCCHHHHHHHHHHHHH-------H----TCSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHHC
T ss_pred CceeCCHHHHHHHHHHHHH-------h----CCCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChHh
Confidence 3567777777777766521 1 2346799999999999999999999988 99999998875543
No 155
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.04 E-value=3.1e-06 Score=92.87 Aligned_cols=66 Identities=23% Similarity=0.419 Sum_probs=54.5
Q ss_pred CccCCCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHcCCceEEEecccc
Q 002386 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPEL 914 (929)
Q Consensus 841 ~~w~dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~glnfIsVkg~EL 914 (929)
..|+++.|.+.+++.+.+.+...... -....++||+||||||||++|+++|++++.+|+.++++.+
T Consensus 9 ~~~~~~ig~~~~~~~l~~~l~~~~~~--------~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~ 74 (324)
T 1hqc_A 9 KTLDEYIGQERLKQKLRVYLEAAKAR--------KEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAI 74 (324)
T ss_dssp CSTTTCCSCHHHHHHHHHHHHHHHHH--------CSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTC
T ss_pred ccHHHhhCHHHHHHHHHHHHHHHHcc--------CCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccc
Confidence 47899999999999998887642110 1234689999999999999999999999999999998875
No 156
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.98 E-value=5.6e-06 Score=90.79 Aligned_cols=73 Identities=16% Similarity=0.291 Sum_probs=44.5
Q ss_pred CceEEEECCCCcHHHHHHHHHHHHhc-cCccceeeEEEEeccccccCchhhH-HHHHHHHHHHHHhcCCcEEEEcccccc
Q 002386 590 PGHILIHGPPGSGKTSLAKAVAKSLE-HHKDLVAHIVFVCCSRLSLEKGPII-RQALSNFISEALDHAPSIVIFDNLDSI 667 (929)
Q Consensus 590 ~~~vLL~GppGtGKTtLaralA~~L~-~~~~~~~~~~~V~~s~L~~~~~~~~-~~~l~~~f~~a~~~~PsVL~LDEiD~L 667 (929)
+.+++|+||||||||+||+++|.++. ... ..+.++++.++........ ...+...+... ..+.+|||||++..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g---~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~--~~~~lLiiDdig~~ 226 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKG---VSTTLLHFPSFAIDVKNAISNGSVKEEIDAV--KNVPVLILDDIGAE 226 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSC---CCEEEEEHHHHHHHHHCCCC----CCTTHHH--HTSSEEEEETCCC-
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcC---CcEEEEEHHHHHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCC
Confidence 46899999999999999999999886 433 4566677665432110000 00011112221 24569999999754
No 157
>1zc1_A Ubiquitin fusion degradation protein 1; UFD1, double-PSI-beta-barrel, protein turnover; NMR {Saccharomyces cerevisiae}
Probab=97.98 E-value=6.8e-05 Score=75.79 Aligned_cols=153 Identities=10% Similarity=0.102 Sum_probs=128.3
Q ss_pred ceeCCHHHHHHHhhccccCCCCceEEEEEEeCC-CCeEEEEecCCcCCCCeeeecHhHHhhcCCCCCCEEEEEEeecCcc
Q 002386 15 FVSLPLKLIETLESTRSAHLLPQVLSLELRSRS-NQRWVVAWSGATSSSSFIEVARQFAECISLADHTIVQVRVVSNVLK 93 (929)
Q Consensus 15 ~v~lp~~l~~~l~~~~~~~~~~q~~~~e~~~~~-~~~~~~gw~g~~s~~~~iei~~~~a~~~gl~~~~~v~~~~~~~~~~ 93 (929)
=|-||++..+.|.+.+.. --...||+... ++..|+|=-..++..+.|=+.+-+.+.|||.+|+.|.|+- .+.|.
T Consensus 47 KIiLP~SaL~~L~~~~i~----~Pm~F~l~n~~~~~~th~GVlEF~A~EG~v~lP~wmm~~L~l~~gd~V~i~~-~~LPk 121 (208)
T 1zc1_A 47 KIFLPPSALSKLSMLNIR----YPMLFKLTANETGRVTHGGVLEFIAEEGRVYLPQWMMETLGIQPGSLLQISS-TDVPL 121 (208)
T ss_dssp EEEECHHHHHHHHHTTCC----SSCCEEEECTTTCCEEEEEEEEECCSSCEEEECHHHHHHHTCCTTCEEEEEE-EECCC
T ss_pred eEECCHHHHHHHHHCCCC----cCEEEEEEeCCCCCEEEEEEEEEEcCCCeEEcCHHHHHhcCCCCCCEEEEEE-eEcCC
Confidence 367999999999986543 23566777543 3578998888888888999999999999999999999995 47999
Q ss_pred ceeEEEecCCcchhHHHHhcHHHHHHHHhcccceecCCCeEeEEecCceEEEEEEeccCCCC---CeEEecCCCeEEEcc
Q 002386 94 ATLVTIEPLTEDDWEVLELNSEHAEAAILNQVRIVHEAMRFPLWLHGRTIITFHVVSTFPKK---PVVQLVPGTEVAVAP 170 (929)
Q Consensus 94 ~~~v~veP~t~dDWEi~el~a~~le~~lL~Q~r~v~~~~~~~~~~~~~~~~~~~v~~~~p~~---~~~~l~~~tev~vaP 170 (929)
++.|.+.|.+.|=|+| +-+-..||..|- +--+++.|.++.++- ++..-.|.|..+.|+. .+..+..|-||=++|
T Consensus 122 gt~vklqP~~~~Fldi-~npKavLE~~LR-nfstLT~Gd~I~i~~-~~~~y~l~V~e~kP~~~~~aV~IidTDleVDf~~ 198 (208)
T 1zc1_A 122 GQFVKLEPQSVDFLDI-SDPKAVLENVLR-NFSTLTVDDVIEISY-NGKTFKIKILEVKPESSSKSICVIETDLVTDFAP 198 (208)
T ss_dssp CSEEEEECCHHHHHTS-SCHHHHHHHHHH-HCSCEESSSEEEEEE-TTEEEEEEEEEEECSSTTCEECCSSSCSEEEECC
T ss_pred CCEEEEeECccccccc-cCHHHHHHHHhh-cCccccCCCEEEEEe-CCEEEEEEEEEEcCCCCCceEEEEeCceEEEecC
Confidence 9999999999887765 666678999987 599999999999997 5677899999999997 788899999999888
Q ss_pred cCCCC
Q 002386 171 KRRKN 175 (929)
Q Consensus 171 k~r~~ 175 (929)
-..-.
T Consensus 199 p~~y~ 203 (208)
T 1zc1_A 199 PVGYV 203 (208)
T ss_dssp CCCCC
T ss_pred CCCCc
Confidence 65443
No 158
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=97.94 E-value=9.2e-05 Score=87.16 Aligned_cols=38 Identities=26% Similarity=0.204 Sum_probs=29.0
Q ss_pred CCCCCceeEEecCCCCcHHHHHHHHHHHc---CCceEEEec
Q 002386 874 PLRLRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKG 911 (929)
Q Consensus 874 ~lr~~sGiLLyGpPGtGKT~LA~alA~e~---glnfIsVkg 911 (929)
++..++-++++||||||||+|++.+|... |.+.+.+.+
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ 317 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAY 317 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEES
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 56667778999999999999999998654 444444443
No 159
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.92 E-value=8.8e-06 Score=89.57 Aligned_cols=73 Identities=22% Similarity=0.316 Sum_probs=53.8
Q ss_pred CccCCCC-C--chhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHc---CCceEEEecccc
Q 002386 841 SGWDDVG-G--LTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPEL 914 (929)
Q Consensus 841 ~~w~dIg-G--L~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~---glnfIsVkg~EL 914 (929)
..++++. | -..+...++..++.| -+...+++||||||||||++|+++|+++ +.+|+.+++.++
T Consensus 8 ~~f~~fv~g~~~~~a~~~~~~~~~~~-----------~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~ 76 (324)
T 1l8q_A 8 YTLENFIVGEGNRLAYEVVKEALENL-----------GSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDF 76 (324)
T ss_dssp CCSSSCCCCTTTHHHHHHHHHHHHTT-----------TTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCcccCCCCCcHHHHHHHHHHHHhCc-----------CCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHH
Confidence 4566653 3 333445555555543 1234679999999999999999999998 999999999999
Q ss_pred cccccChhhH
Q 002386 915 LNKYIGASEQ 924 (929)
Q Consensus 915 l~kyIG~SEq 924 (929)
.+.++++-+.
T Consensus 77 ~~~~~~~~~~ 86 (324)
T 1l8q_A 77 AQAMVEHLKK 86 (324)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHc
Confidence 8887766543
No 160
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=97.90 E-value=8e-06 Score=90.15 Aligned_cols=54 Identities=28% Similarity=0.225 Sum_probs=45.4
Q ss_pred cCCCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHcCCceEEEec
Q 002386 843 WDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKG 911 (929)
Q Consensus 843 w~dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~glnfIsVkg 911 (929)
..++.|.+++++.+...+.. +.++|||||||||||++|+++|+.++.+|+.+.+
T Consensus 26 ~~~i~g~~~~~~~l~~~l~~---------------~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~ 79 (331)
T 2r44_A 26 GKVVVGQKYMINRLLIGICT---------------GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQF 79 (331)
T ss_dssp TTTCCSCHHHHHHHHHHHHH---------------TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred ccceeCcHHHHHHHHHHHHc---------------CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEec
Confidence 45677888888777665542 2589999999999999999999999999999987
No 161
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.87 E-value=1.4e-05 Score=87.10 Aligned_cols=70 Identities=24% Similarity=0.328 Sum_probs=52.3
Q ss_pred cCCCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHc---CCceEEEecccccc
Q 002386 843 WDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLN 916 (929)
Q Consensus 843 w~dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~---glnfIsVkg~ELl~ 916 (929)
..++.|.+.+++.+...+.... ..-..+-++..++||+||||||||++|+++|+.+ +.+|+.++++++..
T Consensus 16 ~~~i~G~~~~~~~l~~~i~~~~----~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~ 88 (311)
T 4fcw_A 16 HKRVVGQDEAIRAVADAIRRAR----AGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYME 88 (311)
T ss_dssp HTTCCSCHHHHHHHHHHHHHHH----HTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCS
T ss_pred hhhcCCHHHHHHHHHHHHHHHh----cCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccc
Confidence 3457788999888888775321 1011234456689999999999999999999988 66799999887643
No 162
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.87 E-value=1.2e-05 Score=85.76 Aligned_cols=63 Identities=25% Similarity=0.236 Sum_probs=44.9
Q ss_pred CccCCCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHcC---CceEEEecccc
Q 002386 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACS---LRFISVKGPEL 914 (929)
Q Consensus 841 ~~w~dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~g---lnfIsVkg~EL 914 (929)
..|+++.|.+...+.+.+.+.... ..+.++||+||||||||++|++++..++ .+|+.++++++
T Consensus 3 ~~f~~~ig~~~~~~~~~~~~~~~~-----------~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~ 68 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLEQVSHLA-----------PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAAL 68 (265)
T ss_dssp -------CCCHHHHHHHHHHHHHT-----------TSCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGS
T ss_pred cccccceeCCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCC
Confidence 357778888888777776665321 1246899999999999999999999885 68999998875
No 163
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=97.85 E-value=1.8e-05 Score=91.11 Aligned_cols=60 Identities=20% Similarity=0.339 Sum_probs=49.6
Q ss_pred CccCCCCCchhhH---HHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHcCCceEEEeccc
Q 002386 841 SGWDDVGGLTDIQ---NAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPE 913 (929)
Q Consensus 841 ~~w~dIgGL~~vk---~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~glnfIsVkg~E 913 (929)
..++++.|.+.+. ..|...++-. + ..++||+||||||||++|+++|+.++.+|+.+++..
T Consensus 23 ~~l~~ivGq~~~~~~~~~L~~~i~~~------------~-~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~ 85 (447)
T 3pvs_A 23 ENLAQYIGQQHLLAAGKPLPRAIEAG------------H-LHSMILWGPPGTGKTTLAEVIARYANADVERISAVT 85 (447)
T ss_dssp CSTTTCCSCHHHHSTTSHHHHHHHHT------------C-CCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTT
T ss_pred CCHHHhCCcHHHHhchHHHHHHHHcC------------C-CcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEecc
Confidence 4788999999888 6777766521 1 157999999999999999999999999999998643
No 164
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.82 E-value=1.8e-05 Score=88.91 Aligned_cols=121 Identities=20% Similarity=0.243 Sum_probs=72.4
Q ss_pred cCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccccccCchhhHHHHHHHHHHHHHhcCCcEEEEccc
Q 002386 585 YHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNL 664 (929)
Q Consensus 585 ~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~~~~~~~~~~~l~~~f~~a~~~~PsVL~LDEi 664 (929)
++++++..++|+||+|+||||++++++..++ ..++.+.... . .....+. ...+..++++||+
T Consensus 164 ~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~------g~~~~~~~~~---~---~~~~~lg------~~~q~~~~l~dd~ 225 (377)
T 1svm_A 164 YNIPKKRYWLFKGPIDSGKTTLAAALLELCG------GKALNVNLPL---D---RLNFELG------VAIDQFLVVFEDV 225 (377)
T ss_dssp HCCTTCCEEEEECSTTSSHHHHHHHHHHHHC------CEEECCSSCT---T---THHHHHG------GGTTCSCEEETTC
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhhcC------CcEEEEeccc---h---hHHHHHH------HhcchhHHHHHHH
Confidence 3577778899999999999999999998764 3333222211 1 1111111 2234567899999
Q ss_pred cccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCCCcEEEEEecCCCCccccccccCCCcceEeeCCC
Q 002386 665 DSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPA 740 (929)
Q Consensus 665 D~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~VivIattn~~~~L~~~L~~~~Rf~~~i~l~~ 740 (929)
+.+......... .. . . .....+.+.+++ .+.+++++|+++.+ +++.+++|++..+...+
T Consensus 226 ~~~~~~~r~l~~-~~-~-~-~~~~~l~~~ldG------------~v~v~~~tn~~~~l-~alf~pg~ld~~~~~l~ 284 (377)
T 1svm_A 226 KGTGGESRDLPS-GQ-G-I-NNLDNLRDYLDG------------SVKVNLEKKHLNKR-TQIFPPGIVTMNEYSVP 284 (377)
T ss_dssp CCSTTTTTTCCC-CS-H-H-HHHHTTHHHHHC------------SSCEEECCSSSCCE-EECCCCEEEEECSCCCC
T ss_pred HHHHHHHhhccc-cC-c-c-hHHHHHHHHhcC------------CCeEeeccCchhhH-HHhhcCcccChhHHhhc
Confidence 987631011100 01 0 0 012334444443 25678889999999 78888889887666644
No 165
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.81 E-value=1.8e-05 Score=79.18 Aligned_cols=45 Identities=24% Similarity=0.321 Sum_probs=37.3
Q ss_pred CCCCceeEEecCCCCcHHHHHHHHHHHc----CCceEEEeccccccccc
Q 002386 875 LRLRSNVLLYGPPGCGKTHIVGAAAAAC----SLRFISVKGPELLNKYI 919 (929)
Q Consensus 875 lr~~sGiLLyGpPGtGKT~LA~alA~e~----glnfIsVkg~ELl~kyI 919 (929)
...+.+++|+||||||||+||+++|+.+ |..++.+...+++..+.
T Consensus 35 ~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~~~ 83 (180)
T 3ec2_A 35 PEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFRLK 83 (180)
T ss_dssp GGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHHHH
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHH
Confidence 3446789999999999999999999876 77788888888876554
No 166
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=97.80 E-value=1.2e-05 Score=89.02 Aligned_cols=51 Identities=27% Similarity=0.290 Sum_probs=40.0
Q ss_pred CCccCCCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHcC
Q 002386 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACS 903 (929)
Q Consensus 840 ~~~w~dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~g 903 (929)
...|+++.|.+.+++.+......+ ...++|||||||||||++|+++|+.++
T Consensus 20 ~~~f~~i~G~~~~~~~l~~~~~~~-------------~~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 20 VFPFSAIVGQEDMKLALLLTAVDP-------------GIGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHHCG-------------GGCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CCCchhccChHHHHHHHHHHhhCC-------------CCceEEEECCCCccHHHHHHHHHHhCc
Confidence 367999999998877654433211 234699999999999999999999886
No 167
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.76 E-value=3.5e-05 Score=78.58 Aligned_cols=62 Identities=27% Similarity=0.374 Sum_probs=49.4
Q ss_pred CccCCCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHc-----CCceEEEeccccc
Q 002386 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC-----SLRFISVKGPELL 915 (929)
Q Consensus 841 ~~w~dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~-----glnfIsVkg~ELl 915 (929)
..|+++.|.+++.+.|.+.+... ...++||+||||||||++|+++|+++ +..|+.+++.+..
T Consensus 14 ~~~~~~~g~~~~~~~l~~~l~~~-------------~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (226)
T 2chg_A 14 RTLDEVVGQDEVIQRLKGYVERK-------------NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDER 80 (226)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHTT-------------CCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTT
T ss_pred CCHHHHcCcHHHHHHHHHHHhCC-------------CCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEecccccc
Confidence 56888999999999888877531 12349999999999999999999875 4568888876543
No 168
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=97.75 E-value=2.7e-05 Score=82.87 Aligned_cols=28 Identities=32% Similarity=0.564 Sum_probs=24.4
Q ss_pred CCCceEEEECCCCcHHHHHHHHHHHHhc
Q 002386 588 PLPGHILIHGPPGSGKTSLAKAVAKSLE 615 (929)
Q Consensus 588 ~~~~~vLL~GppGtGKTtLaralA~~L~ 615 (929)
+...+++||||||||||++|+++|+.+.
T Consensus 102 ~~~n~~~l~GppgtGKt~~a~ala~~~~ 129 (267)
T 1u0j_A 102 GKRNTIWLFGPATTGKTNIAEAIAHTVP 129 (267)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHhhhc
Confidence 4346799999999999999999999754
No 169
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.74 E-value=9.4e-06 Score=89.00 Aligned_cols=42 Identities=12% Similarity=0.143 Sum_probs=35.3
Q ss_pred CCCceeEEecCCCCcHHHHHHHHHHHc----------CCceEEEeccccccc
Q 002386 876 RLRSNVLLYGPPGCGKTHIVGAAAAAC----------SLRFISVKGPELLNK 917 (929)
Q Consensus 876 r~~sGiLLyGpPGtGKT~LA~alA~e~----------glnfIsVkg~ELl~k 917 (929)
..+.+++||||||||||++|+++++++ +..|+.|+|..+.+.
T Consensus 43 ~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~ 94 (318)
T 3te6_A 43 SQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGM 94 (318)
T ss_dssp TCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCH
Confidence 356789999999999999999999998 467999999886654
No 170
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.73 E-value=2.4e-05 Score=86.65 Aligned_cols=67 Identities=25% Similarity=0.400 Sum_probs=50.1
Q ss_pred CccCCCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHcCCceEEEeccccc
Q 002386 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELL 915 (929)
Q Consensus 841 ~~w~dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~glnfIsVkg~ELl 915 (929)
..+++..|.+.+++.+...+..... +-..+..++|+||||||||+||+++|++.+.+|....|+.+.
T Consensus 22 ~~l~~~~g~~~~~~~l~~~i~~~~~--------~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~ 88 (334)
T 1in4_A 22 KSLDEFIGQENVKKKLSLALEAAKM--------RGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLV 88 (334)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHHHHH--------HTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCC
T ss_pred ccHHHccCcHHHHHHHHHHHHHHHh--------cCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhc
Confidence 3567777778787777766542100 012346799999999999999999999999999888887653
No 171
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=97.71 E-value=3.6e-06 Score=73.41 Aligned_cols=69 Identities=16% Similarity=0.198 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHhhcccccCHHHHHHHHhhcCCCChhhHHHHHHHHHHHHhhccccCCccccccccccccccccccccccc
Q 002386 744 SERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEF 823 (929)
Q Consensus 744 ~eR~~IL~~~l~~~~~~~~d~~l~~LA~~teG~s~~DL~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~lt~edf~~al~~~ 823 (929)
++|.+||+.++++..+. ++.++..+|..|+||+|+||..+|+.|...++++ ....++++||..++...
T Consensus 1 ~~R~~Il~~~l~~~~~~-~~vdl~~lA~~t~G~SGADi~~l~~eAa~~ai~~-----------~~~~i~~~df~~Al~~v 68 (82)
T 2dzn_B 1 MERRLIFGTIASKMSLA-PEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRK-----------NRYVILQSDLEEAYATQ 68 (82)
T ss_dssp -------------CEEC-TTCCSTTTTTSSCCCCHHHHHHHHHHHHHHHHHT-----------TCSEECHHHHHHHHHTT
T ss_pred CHHHHHHHHHHcCCCCC-CcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh-----------ccCCcCHHHHHHHHHHH
Confidence 47899999888765442 3345789999999999999999999999999987 23569999999999886
Q ss_pred c
Q 002386 824 L 824 (929)
Q Consensus 824 ~ 824 (929)
.
T Consensus 69 ~ 69 (82)
T 2dzn_B 69 V 69 (82)
T ss_dssp C
T ss_pred H
Confidence 4
No 172
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.66 E-value=6.8e-05 Score=77.77 Aligned_cols=65 Identities=18% Similarity=0.171 Sum_probs=47.4
Q ss_pred CccCCCCC---chhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHcC---CceEEEecccc
Q 002386 841 SGWDDVGG---LTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACS---LRFISVKGPEL 914 (929)
Q Consensus 841 ~~w~dIgG---L~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~g---lnfIsVkg~EL 914 (929)
..++++.| ...+.+.++..+.++ ...++||+||||||||++|+++|++++ .+++.+++.++
T Consensus 25 ~~~~~~~~~~~~~~~~~~l~~~~~~~-------------~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~ 91 (242)
T 3bos_A 25 ETFTSYYPAAGNDELIGALKSAASGD-------------GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIH 91 (242)
T ss_dssp CSTTTSCC--CCHHHHHHHHHHHHTC-------------SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGG
T ss_pred CChhhccCCCCCHHHHHHHHHHHhCC-------------CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHH
Confidence 45666654 245555555555432 346899999999999999999998874 78888988887
Q ss_pred cccc
Q 002386 915 LNKY 918 (929)
Q Consensus 915 l~ky 918 (929)
...+
T Consensus 92 ~~~~ 95 (242)
T 3bos_A 92 ASIS 95 (242)
T ss_dssp GGSC
T ss_pred HHHH
Confidence 6654
No 173
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.66 E-value=0.0002 Score=73.90 Aligned_cols=30 Identities=27% Similarity=0.336 Sum_probs=25.3
Q ss_pred CCCCCceEEEECCCCcHHHHHHHHHHHHhc
Q 002386 586 HLPLPGHILIHGPPGSGKTSLAKAVAKSLE 615 (929)
Q Consensus 586 ~~~~~~~vLL~GppGtGKTtLaralA~~L~ 615 (929)
+++.+..++|+||+|+||||+++.++..+.
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~ 48 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFIAKGL 48 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 355667799999999999999999997664
No 174
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.66 E-value=0.00018 Score=72.16 Aligned_cols=24 Identities=46% Similarity=0.812 Sum_probs=22.1
Q ss_pred eEEEECCCCcHHHHHHHHHHHHhc
Q 002386 592 HILIHGPPGSGKTSLAKAVAKSLE 615 (929)
Q Consensus 592 ~vLL~GppGtGKTtLaralA~~L~ 615 (929)
.+.|.||+|+|||||++.++..+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999999875
No 175
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.63 E-value=6.6e-05 Score=83.08 Aligned_cols=61 Identities=25% Similarity=0.456 Sum_probs=49.1
Q ss_pred CccCCCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHcC------CceEEEecccc
Q 002386 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACS------LRFISVKGPEL 914 (929)
Q Consensus 841 ~~w~dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~g------lnfIsVkg~EL 914 (929)
..|+++.|.+++++.|...+... +. .++|||||||||||++|+++|++++ ..++.+++++.
T Consensus 34 ~~~~~i~g~~~~~~~l~~~l~~~------------~~-~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~ 100 (353)
T 1sxj_D 34 KNLDEVTAQDHAVTVLKKTLKSA------------NL-PHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDE 100 (353)
T ss_dssp SSTTTCCSCCTTHHHHHHHTTCT------------TC-CCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSC
T ss_pred CCHHHhhCCHHHHHHHHHHHhcC------------CC-CEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccc
Confidence 57999999999999888876521 11 3499999999999999999999854 46888887764
No 176
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.63 E-value=7.1e-05 Score=76.13 Aligned_cols=40 Identities=30% Similarity=0.407 Sum_probs=35.5
Q ss_pred ceeEEecCCCCcHHHHHHHHHHHc---CCceEEEecccccccc
Q 002386 879 SNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKY 918 (929)
Q Consensus 879 sGiLLyGpPGtGKT~LA~alA~e~---glnfIsVkg~ELl~ky 918 (929)
.+++|+||||||||+||+++|.++ +.+++.+.+++++..+
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~~~ 97 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFREL 97 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHHHH
Confidence 789999999999999999999988 7788889988877654
No 177
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=97.60 E-value=3.4e-05 Score=83.99 Aligned_cols=62 Identities=27% Similarity=0.413 Sum_probs=49.0
Q ss_pred CccCCCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHc-----CCceEEEeccccc
Q 002386 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC-----SLRFISVKGPELL 915 (929)
Q Consensus 841 ~~w~dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~-----glnfIsVkg~ELl 915 (929)
..|+++.|.+.+++.|...+.. + +.+ ++|||||||||||++|+++|+++ +.+|+.+++++..
T Consensus 14 ~~~~~~~g~~~~~~~l~~~l~~-----------~-~~~-~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~ 80 (319)
T 2chq_A 14 RTLDEVVGQDEVIQRLKGYVER-----------K-NIP-HLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDER 80 (319)
T ss_dssp SSGGGSCSCHHHHHHHHTTTTT-----------T-CCC-CEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTT
T ss_pred CCHHHHhCCHHHHHHHHHHHhC-----------C-CCC-eEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCcccc
Confidence 5788999999998888776542 1 222 49999999999999999999986 4568999887643
No 178
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.59 E-value=5.8e-05 Score=82.51 Aligned_cols=60 Identities=18% Similarity=0.237 Sum_probs=46.1
Q ss_pred CCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHc---CCceEEEeccccc
Q 002386 845 DVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELL 915 (929)
Q Consensus 845 dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~---glnfIsVkg~ELl 915 (929)
++.|.....+.+.+.+... .+...++||+|+||||||++|++++..+ +.+|+.|+++.+-
T Consensus 3 ~iig~s~~~~~~~~~~~~~-----------a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~ 65 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMV-----------APSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALN 65 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHH-----------CSTTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCC
T ss_pred CcEECCHHHHHHHHHHHHH-----------hCCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCC
Confidence 4567777766666665432 1335689999999999999999999966 6789999987753
No 179
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.57 E-value=0.00028 Score=72.39 Aligned_cols=40 Identities=23% Similarity=0.194 Sum_probs=30.5
Q ss_pred CCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccc
Q 002386 586 HLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSR 631 (929)
Q Consensus 586 ~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~ 631 (929)
+++++.-++|+||||+||||+++.+|..-+ ..+.+++...
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~------~~v~~i~~~~ 55 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGLLSG------KKVAYVDTEG 55 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHHHHC------SEEEEEESSC
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHHHcC------CcEEEEECCC
Confidence 466667799999999999999999998211 4566666543
No 180
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.56 E-value=0.00036 Score=72.73 Aligned_cols=84 Identities=11% Similarity=0.051 Sum_probs=52.2
Q ss_pred CCCCCceEEEECCCCcHHHHHHHHHHHHhccCc---cceeeEEEEeccccc------------c---------------C
Q 002386 586 HLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHK---DLVAHIVFVCCSRLS------------L---------------E 635 (929)
Q Consensus 586 ~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~---~~~~~~~~V~~s~L~------------~---------------~ 635 (929)
+++.+.-++|+||+|+|||++++.+|....... .....+++++..... + .
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 99 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAF 99 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEecC
Confidence 356667799999999999999999998632211 011456777665410 0 0
Q ss_pred chhhHHHHHHHHHHHHHhcCCcEEEEcccccccc
Q 002386 636 KGPIIRQALSNFISEALDHAPSIVIFDNLDSIIS 669 (929)
Q Consensus 636 ~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~ 669 (929)
........+..+........|.+|+||++..++.
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~ 133 (243)
T 1n0w_A 100 NTDHQTQLLYQASAMMVESRYALLIVDSATALYR 133 (243)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC
T ss_pred CHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHH
Confidence 0111122233333444456899999999988763
No 181
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=97.55 E-value=6.5e-05 Score=82.05 Aligned_cols=61 Identities=26% Similarity=0.432 Sum_probs=48.9
Q ss_pred CccCCCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHcC-----CceEEEecccc
Q 002386 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACS-----LRFISVKGPEL 914 (929)
Q Consensus 841 ~~w~dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~g-----lnfIsVkg~EL 914 (929)
..|+++.|.+++++.|...+... +. .++|||||||||||++|+++|+++. .+|+.+++++.
T Consensus 22 ~~~~~~~g~~~~~~~l~~~l~~~------------~~-~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~ 87 (327)
T 1iqp_A 22 QRLDDIVGQEHIVKRLKHYVKTG------------SM-PHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDE 87 (327)
T ss_dssp CSTTTCCSCHHHHHHHHHHHHHT------------CC-CEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCH
T ss_pred CCHHHhhCCHHHHHHHHHHHHcC------------CC-CeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeecccc
Confidence 57899999999999998877521 12 2599999999999999999999852 45888887654
No 182
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.54 E-value=5.1e-05 Score=85.23 Aligned_cols=65 Identities=20% Similarity=0.256 Sum_probs=50.8
Q ss_pred CchhhHHHHHHHHhcCCC--------chhhhhh--CCCCCCceeEEecCCCCcHHHHHHHHHHHcCCceEEEeccc
Q 002386 848 GLTDIQNAIKEMIELPSK--------FPNIFAQ--APLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPE 913 (929)
Q Consensus 848 GL~~vk~~L~e~le~p~k--------~~~if~~--~~lr~~sGiLLyGpPGtGKT~LA~alA~e~glnfIsVkg~E 913 (929)
|..++++.| +.++||.+ +...+.+ ..++.+..++|+||||||||+|++++|+..+..++.+.+++
T Consensus 130 g~~~i~~~l-~~v~~~~~l~~~~~~~~~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~ 204 (377)
T 1svm_A 130 GSADIEEWM-AGVAWLHCLLPKMDSVVYDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPL 204 (377)
T ss_dssp CCCCHHHHH-HHHHHHTTTSTTHHHHHHHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCT
T ss_pred ChHHHHHHH-hcchhhhhhhhhhhHHHHHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccc
Confidence 446677777 78898874 3344444 36777888999999999999999999999998888766554
No 183
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.53 E-value=6.4e-05 Score=84.25 Aligned_cols=62 Identities=19% Similarity=0.162 Sum_probs=49.3
Q ss_pred CCCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHc-----------CCceEEEecc
Q 002386 844 DDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC-----------SLRFISVKGP 912 (929)
Q Consensus 844 ~dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~-----------glnfIsVkg~ 912 (929)
+++.|.+...+.|.+.+..... -..+.+++|+||||||||++|+++|+++ +.+|+.+++.
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~---------~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~ 90 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVK---------NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCR 90 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHT---------TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHH
T ss_pred CCCCChHHHHHHHHHHHHHHHc---------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECc
Confidence 6788988888888877652211 1234589999999999999999999988 9999999976
Q ss_pred cc
Q 002386 913 EL 914 (929)
Q Consensus 913 EL 914 (929)
+.
T Consensus 91 ~~ 92 (384)
T 2qby_B 91 EV 92 (384)
T ss_dssp HH
T ss_pred cC
Confidence 54
No 184
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.51 E-value=8.7e-05 Score=82.92 Aligned_cols=63 Identities=22% Similarity=0.183 Sum_probs=49.6
Q ss_pred cCCCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHc---------CCceEEEeccc
Q 002386 843 WDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC---------SLRFISVKGPE 913 (929)
Q Consensus 843 w~dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~---------glnfIsVkg~E 913 (929)
.+++.|.+...+.|.+.+..... ...+.+++|+||||||||++|+++++++ +..|+.+++++
T Consensus 18 p~~~~gr~~~~~~l~~~l~~~~~---------~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 88 (387)
T 2v1u_A 18 PDVLPHREAELRRLAEVLAPALR---------GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARH 88 (387)
T ss_dssp CSCCTTCHHHHHHHHHTTGGGTS---------SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTT
T ss_pred CCCCCCHHHHHHHHHHHHHHHHc---------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCc
Confidence 36788988888888776542111 1335689999999999999999999988 88999999876
Q ss_pred c
Q 002386 914 L 914 (929)
Q Consensus 914 L 914 (929)
.
T Consensus 89 ~ 89 (387)
T 2v1u_A 89 R 89 (387)
T ss_dssp S
T ss_pred C
Confidence 4
No 185
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.51 E-value=3.8e-05 Score=88.38 Aligned_cols=46 Identities=24% Similarity=0.506 Sum_probs=40.2
Q ss_pred CceeEEecCCCCcHHHHHHHHHHHc-----CCceEEEecccccccccChhh
Q 002386 878 RSNVLLYGPPGCGKTHIVGAAAAAC-----SLRFISVKGPELLNKYIGASE 923 (929)
Q Consensus 878 ~sGiLLyGpPGtGKT~LA~alA~e~-----glnfIsVkg~ELl~kyIG~SE 923 (929)
..+++||||||||||+||+++|+++ +.+|+.+++.++.+.++++-+
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~~~~~~~~ 180 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMK 180 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHH
Confidence 4679999999999999999999988 899999999998877765443
No 186
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.50 E-value=0.00034 Score=77.85 Aligned_cols=81 Identities=17% Similarity=0.160 Sum_probs=52.4
Q ss_pred CCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEecccccc----------------CchhhHHHHHHHHHH
Q 002386 586 HLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSL----------------EKGPIIRQALSNFIS 649 (929)
Q Consensus 586 ~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~~----------------~~~~~~~~~l~~~f~ 649 (929)
|++++.-++|+||||+|||||+..++..+.... ..+.|++...... ......+..+..+..
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~g---g~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~ 133 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMG---GVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDE 133 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTT---CCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcC---CeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHH
Confidence 466667799999999999999999998875432 3456676654211 001122333322222
Q ss_pred HHHhcCCcEEEEcccccccc
Q 002386 650 EALDHAPSIVIFDNLDSIIS 669 (929)
Q Consensus 650 ~a~~~~PsVL~LDEiD~L~~ 669 (929)
......+.++++|.+..+++
T Consensus 134 l~~~~~~dlvVIDSi~~l~~ 153 (356)
T 3hr8_A 134 LVRSGVVDLIVVDSVAALVP 153 (356)
T ss_dssp HHHTSCCSEEEEECTTTCCC
T ss_pred HhhhcCCCeEEehHhhhhcC
Confidence 23346789999999988874
No 187
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=97.48 E-value=4.3e-05 Score=88.98 Aligned_cols=62 Identities=18% Similarity=0.113 Sum_probs=42.9
Q ss_pred CCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHcCC--ceEEEec-----ccccccc
Q 002386 846 VGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSL--RFISVKG-----PELLNKY 918 (929)
Q Consensus 846 IgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~gl--nfIsVkg-----~ELl~ky 918 (929)
+.|.+++++.+...+. .+.++||+||||||||++|+++|..++. .|..+.+ .+|++.+
T Consensus 24 ivGq~~~i~~l~~al~---------------~~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G~~ 88 (500)
T 3nbx_X 24 LYERSHAIRLCLLAAL---------------SGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPL 88 (500)
T ss_dssp CSSCHHHHHHHHHHHH---------------HTCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHCCB
T ss_pred hHHHHHHHHHHHHHHh---------------cCCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcCcc
Confidence 5677777776655442 2358999999999999999999998854 3444333 5677766
Q ss_pred cChh
Q 002386 919 IGAS 922 (929)
Q Consensus 919 IG~S 922 (929)
.|..
T Consensus 89 ~~~~ 92 (500)
T 3nbx_X 89 SIQA 92 (500)
T ss_dssp C---
T ss_pred cHHH
Confidence 6554
No 188
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.48 E-value=9.7e-05 Score=80.49 Aligned_cols=61 Identities=16% Similarity=0.247 Sum_probs=49.3
Q ss_pred CccCCCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHc-----CCceEEEecccc
Q 002386 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC-----SLRFISVKGPEL 914 (929)
Q Consensus 841 ~~w~dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~-----glnfIsVkg~EL 914 (929)
..|+++.|.+.+.+.|...+.. -+.+. +|||||||||||++|+++|+++ +.+++.+++++.
T Consensus 18 ~~~~~~~g~~~~~~~l~~~l~~------------~~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~ 83 (323)
T 1sxj_B 18 QVLSDIVGNKETIDRLQQIAKD------------GNMPH-MIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDD 83 (323)
T ss_dssp SSGGGCCSCTHHHHHHHHHHHS------------CCCCC-EEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSC
T ss_pred CCHHHHHCCHHHHHHHHHHHHc------------CCCCe-EEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccc
Confidence 4688899999999998887652 12233 9999999999999999999985 466888888763
No 189
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.43 E-value=0.00011 Score=81.27 Aligned_cols=60 Identities=25% Similarity=0.513 Sum_probs=46.4
Q ss_pred CccCCCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHcC-----CceEEEeccc
Q 002386 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACS-----LRFISVKGPE 913 (929)
Q Consensus 841 ~~w~dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~g-----lnfIsVkg~E 913 (929)
..|+++.|.+.+.+.|...+.- + +.+ ++|||||||||||++|+++|++.. ..++.++.++
T Consensus 22 ~~~~~~~g~~~~~~~L~~~i~~-----------g-~~~-~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~ 86 (340)
T 1sxj_C 22 ETLDEVYGQNEVITTVRKFVDE-----------G-KLP-HLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASD 86 (340)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHT-----------T-CCC-CEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTS
T ss_pred CcHHHhcCcHHHHHHHHHHHhc-----------C-CCc-eEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcc
Confidence 4688888999998888877652 1 223 399999999999999999999852 3477777665
No 190
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.39 E-value=0.00032 Score=78.08 Aligned_cols=80 Identities=23% Similarity=0.200 Sum_probs=51.3
Q ss_pred CCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccccccCc----------------hhhHHHHHHHHHH
Q 002386 586 HLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEK----------------GPIIRQALSNFIS 649 (929)
Q Consensus 586 ~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~~~~----------------~~~~~~~l~~~f~ 649 (929)
|++++.-++|+|+||+|||+|+..++..+.... ..+.+++...-.... ....++.+..+..
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g---~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~ 133 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAG---GIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADM 133 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTT---CCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCC---CeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHH
Confidence 466667799999999999999999998765332 345666654321100 0112232322222
Q ss_pred HHHhcCCcEEEEccccccc
Q 002386 650 EALDHAPSIVIFDNLDSII 668 (929)
Q Consensus 650 ~a~~~~PsVL~LDEiD~L~ 668 (929)
.+....|.+|+||++..++
T Consensus 134 l~~~~~~~lIVIDsl~~l~ 152 (349)
T 2zr9_A 134 LVRSGALDIIVIDSVAALV 152 (349)
T ss_dssp HHTTTCCSEEEEECGGGCC
T ss_pred HHhcCCCCEEEEcChHhhc
Confidence 3335679999999999887
No 191
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.38 E-value=7.6e-05 Score=81.72 Aligned_cols=43 Identities=21% Similarity=0.299 Sum_probs=36.4
Q ss_pred CceeEEecCCCCcHHHHHHHHHHHc----CCceEEEecccccccccC
Q 002386 878 RSNVLLYGPPGCGKTHIVGAAAAAC----SLRFISVKGPELLNKYIG 920 (929)
Q Consensus 878 ~sGiLLyGpPGtGKT~LA~alA~e~----glnfIsVkg~ELl~kyIG 920 (929)
..+++||||||||||+||.++|.++ |.+++.+..++++..+.+
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~l~~ 198 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDVKN 198 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHHHHC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHHHHH
Confidence 5789999999999999999999855 478888888888775543
No 192
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.35 E-value=0.00044 Score=76.13 Aligned_cols=84 Identities=14% Similarity=0.161 Sum_probs=53.6
Q ss_pred CCCCCceEEEECCCCcHHHHHHHHHHHHhccCc---cceeeEEEEeccccc-cC-----------c--------------
Q 002386 586 HLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHK---DLVAHIVFVCCSRLS-LE-----------K-------------- 636 (929)
Q Consensus 586 ~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~---~~~~~~~~V~~s~L~-~~-----------~-------------- 636 (929)
|++++.-++|+|+||+|||+++..+|..+.... .....+.|++...-. .. .
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~ 182 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAI 182 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCC
Confidence 466677799999999999999999998763321 011467777776421 00 0
Q ss_pred -hhhHHHHHHHHHHHHHh-cCCcEEEEcccccccc
Q 002386 637 -GPIIRQALSNFISEALD-HAPSIVIFDNLDSIIS 669 (929)
Q Consensus 637 -~~~~~~~l~~~f~~a~~-~~PsVL~LDEiD~L~~ 669 (929)
.......+..+...... ..+.+|+||.+..++.
T Consensus 183 ~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~ 217 (324)
T 2z43_A 183 NTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFR 217 (324)
T ss_dssp SHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHH
T ss_pred CHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhh
Confidence 11111223333334444 6789999999998874
No 193
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.33 E-value=0.00069 Score=70.84 Aligned_cols=27 Identities=30% Similarity=0.495 Sum_probs=23.6
Q ss_pred CCCCCceEEEECCCCcHHHHHHHHHHH
Q 002386 586 HLPLPGHILIHGPPGSGKTSLAKAVAK 612 (929)
Q Consensus 586 ~~~~~~~vLL~GppGtGKTtLaralA~ 612 (929)
+++++.-+.|.||+|+|||||++.++.
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 456667799999999999999999984
No 194
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.33 E-value=0.00076 Score=75.44 Aligned_cols=81 Identities=21% Similarity=0.185 Sum_probs=52.0
Q ss_pred CCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccccccCc----------------hhhHHHHHHHHHH
Q 002386 586 HLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEK----------------GPIIRQALSNFIS 649 (929)
Q Consensus 586 ~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~~~~----------------~~~~~~~l~~~f~ 649 (929)
|++++.-++|+|+||+|||++|..+|..+.... ..+.+++...-.... ....++.+..+-.
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~g---~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~ 146 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAG---GTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMEL 146 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTT---CCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHCC---CeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHH
Confidence 466677899999999999999999988764332 356667665321110 0112232222222
Q ss_pred HHHhcCCcEEEEcccccccc
Q 002386 650 EALDHAPSIVIFDNLDSIIS 669 (929)
Q Consensus 650 ~a~~~~PsVL~LDEiD~L~~ 669 (929)
......+.+||||.+..+.+
T Consensus 147 l~~~~~~~lVVIDsl~~l~~ 166 (366)
T 1xp8_A 147 LVRSGAIDVVVVDSVAALTP 166 (366)
T ss_dssp HHTTTCCSEEEEECTTTCCC
T ss_pred HHhcCCCCEEEEeChHHhcc
Confidence 23346789999999999874
No 195
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.30 E-value=0.00016 Score=70.37 Aligned_cols=40 Identities=18% Similarity=0.286 Sum_probs=34.8
Q ss_pred CCceeEEecCCCCcHHHHHHHHHHHc---CCceEEEecccccc
Q 002386 877 LRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLN 916 (929)
Q Consensus 877 ~~sGiLLyGpPGtGKT~LA~alA~e~---glnfIsVkg~ELl~ 916 (929)
....++|+||+|||||+|+++++..+ |.+.+.+.+.++..
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~ 77 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPL 77 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhH
Confidence 35678999999999999999999988 88888888887764
No 196
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.30 E-value=0.00025 Score=73.02 Aligned_cols=52 Identities=27% Similarity=0.375 Sum_probs=42.1
Q ss_pred CccCCCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHcCC
Q 002386 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSL 904 (929)
Q Consensus 841 ~~w~dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~gl 904 (929)
..|+++.|.+...+.|.+.+... +.+..++|+||||||||++|+++|++.+.
T Consensus 20 ~~~~~~~g~~~~~~~l~~~l~~~------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 71 (250)
T 1njg_A 20 QTFADVVGQEHVLTALANGLSLG------------RIHHAYLFSGTRGVGKTSIARLLAKGLNC 71 (250)
T ss_dssp CSGGGCCSCHHHHHHHHHHHHHT------------CCCSEEEEECSTTSCHHHHHHHHHHHHHC
T ss_pred ccHHHHhCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 46888999999998888877531 22347899999999999999999988754
No 197
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=97.27 E-value=0.00034 Score=77.93 Aligned_cols=52 Identities=27% Similarity=0.375 Sum_probs=42.8
Q ss_pred CccCCCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHcCC
Q 002386 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSL 904 (929)
Q Consensus 841 ~~w~dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~gl 904 (929)
..|+++.|.+.+.+.|...+... +.+..+||+||||||||++|+++|+..+.
T Consensus 13 ~~~~~~vg~~~~~~~L~~~l~~~------------~~~~~~ll~G~~G~GKT~la~~la~~l~~ 64 (373)
T 1jr3_A 13 QTFADVVGQEHVLTALANGLSLG------------RIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 (373)
T ss_dssp CSTTTSCSCHHHHHHHHHHHHHT------------CCCSEEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred CchhhccCcHHHHHHHHHHHHhC------------CCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 47889999999999988877521 23457899999999999999999998754
No 198
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.27 E-value=0.00061 Score=75.94 Aligned_cols=80 Identities=21% Similarity=0.244 Sum_probs=51.3
Q ss_pred CCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccccccCc----------------hhhHHHHHHHHHH
Q 002386 586 HLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEK----------------GPIIRQALSNFIS 649 (929)
Q Consensus 586 ~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~~~~----------------~~~~~~~l~~~f~ 649 (929)
|++++.-++|+|+||+|||++|..+|..+.... ..+.+++........ ....+.. .+.+.
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g---~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~-~~~~~ 134 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREG---KTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQA-LEICD 134 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTT---CCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHH-HHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHCC---CeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHH-HHHHH
Confidence 466677899999999999999999998775432 346677764321100 0011222 22222
Q ss_pred -HHHhcCCcEEEEcccccccc
Q 002386 650 -EALDHAPSIVIFDNLDSIIS 669 (929)
Q Consensus 650 -~a~~~~PsVL~LDEiD~L~~ 669 (929)
......+.+|+||.+..+.+
T Consensus 135 ~l~~~~~~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 135 ALARSGAVDVIVVDSVAALTP 155 (356)
T ss_dssp HHHHHTCCSEEEEECGGGCCC
T ss_pred HHHhccCCCEEEEcCHHHhcc
Confidence 22346789999999998873
No 199
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.26 E-value=0.00099 Score=73.93 Aligned_cols=84 Identities=12% Similarity=0.103 Sum_probs=53.0
Q ss_pred CCCCCceEEEECCCCcHHHHHHHHHHHHhccCc---cceeeEEEEecccccc-C--------------------------
Q 002386 586 HLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHK---DLVAHIVFVCCSRLSL-E-------------------------- 635 (929)
Q Consensus 586 ~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~---~~~~~~~~V~~s~L~~-~-------------------------- 635 (929)
|++.+.-++|+|+||+|||+++..+|....... .....+.|++...... .
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~~ 197 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAY 197 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeecC
Confidence 466667799999999999999999998743211 0124677787755211 0
Q ss_pred chhhHHHHHHHHHHHHHh--cCCcEEEEcccccccc
Q 002386 636 KGPIIRQALSNFISEALD--HAPSIVIFDNLDSIIS 669 (929)
Q Consensus 636 ~~~~~~~~l~~~f~~a~~--~~PsVL~LDEiD~L~~ 669 (929)
........+..+...... ..+.+|+||.+..++.
T Consensus 198 ~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~ 233 (343)
T 1v5w_A 198 TSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFR 233 (343)
T ss_dssp STTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHH
T ss_pred CHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHH
Confidence 011112222223333444 6788999999998874
No 200
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.24 E-value=0.0017 Score=77.25 Aligned_cols=47 Identities=23% Similarity=0.367 Sum_probs=34.2
Q ss_pred cccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHH
Q 002386 554 SSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKS 613 (929)
Q Consensus 554 ~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~ 613 (929)
..+.|.+..++++.+.+... ....+-++|+|++|+|||+||+.+++.
T Consensus 124 ~~~vGR~~~l~~L~~~L~~~-------------~~~~~~v~I~G~~GiGKTtLa~~~~~~ 170 (591)
T 1z6t_A 124 VVFVTRKKLVNAIQQKLSKL-------------KGEPGWVTIHGMAGCGKSVLAAEAVRD 170 (591)
T ss_dssp SSCCCCHHHHHHHHHHHTTS-------------TTSCEEEEEECCTTSSHHHHHHHHHCC
T ss_pred CeecccHHHHHHHHHHHhcc-------------cCCCceEEEEcCCCCCHHHHHHHHHhc
Confidence 45678888888887754210 112356999999999999999999754
No 201
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=97.23 E-value=0.00011 Score=74.89 Aligned_cols=31 Identities=19% Similarity=0.216 Sum_probs=26.7
Q ss_pred CceeEEecCCCCcHHHHHHHHHHHcCCceEE
Q 002386 878 RSNVLLYGPPGCGKTHIVGAAAAACSLRFIS 908 (929)
Q Consensus 878 ~sGiLLyGpPGtGKT~LA~alA~e~glnfIs 908 (929)
+.++|||||||||||++|.++|+.++...+.
T Consensus 58 kn~ili~GPPGtGKTt~a~ala~~l~g~i~~ 88 (212)
T 1tue_A 58 KNCLVFCGPANTGKSYFGMSFIHFIQGAVIS 88 (212)
T ss_dssp CSEEEEESCGGGCHHHHHHHHHHHHTCEECC
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHhCCCeee
Confidence 5689999999999999999999998755443
No 202
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.23 E-value=0.00062 Score=70.20 Aligned_cols=30 Identities=30% Similarity=0.369 Sum_probs=25.6
Q ss_pred CCCCCceEEEECCCCcHHHHHHHHHHHHhc
Q 002386 586 HLPLPGHILIHGPPGSGKTSLAKAVAKSLE 615 (929)
Q Consensus 586 ~~~~~~~vLL~GppGtGKTtLaralA~~L~ 615 (929)
+++++.-+.|.||+|+|||||++.++..+.
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~ 50 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQ 50 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 456667799999999999999999998654
No 203
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.22 E-value=0.00097 Score=75.46 Aligned_cols=84 Identities=10% Similarity=0.050 Sum_probs=51.7
Q ss_pred CCCCCceEEEECCCCcHHHHHHHHHHHHhccCc---cceeeEEEEecccccc-C-----------c--------------
Q 002386 586 HLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHK---DLVAHIVFVCCSRLSL-E-----------K-------------- 636 (929)
Q Consensus 586 ~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~---~~~~~~~~V~~s~L~~-~-----------~-------------- 636 (929)
|++++.-++|+||||||||||++.+|-...... .....++|++...... . .
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~~ 253 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAY 253 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEeccC
Confidence 566677899999999999999998875443211 0124577777654210 0 0
Q ss_pred -hhhHHHHHHHHHHHHHhcCCcEEEEcccccccc
Q 002386 637 -GPIIRQALSNFISEALDHAPSIVIFDNLDSIIS 669 (929)
Q Consensus 637 -~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~~ 669 (929)
.......+..+........|.+|+||++-.++.
T Consensus 254 ~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~ 287 (400)
T 3lda_A 254 NADHQLRLLDAAAQMMSESRFSLIVVDSVMALYR 287 (400)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC
T ss_pred ChHHHHHHHHHHHHHHHhcCCceEEecchhhhCc
Confidence 011122233333344446799999999988874
No 204
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.20 E-value=0.00027 Score=78.80 Aligned_cols=62 Identities=18% Similarity=0.285 Sum_probs=47.9
Q ss_pred cCCCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHc------CCceEEEeccc
Q 002386 843 WDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC------SLRFISVKGPE 913 (929)
Q Consensus 843 w~dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~------glnfIsVkg~E 913 (929)
.+++.|.+...+.|.+.+..... -..+..++|+||||||||+||+++++++ +..++.+++.+
T Consensus 19 p~~~~gr~~e~~~l~~~l~~~~~---------~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~ 86 (386)
T 2qby_A 19 PDELPHREDQIRKIASILAPLYR---------EEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQ 86 (386)
T ss_dssp CSCCTTCHHHHHHHHHSSGGGGG---------TCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHc---------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCC
Confidence 36788888888777775542111 1335679999999999999999999988 88999999764
No 205
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.19 E-value=0.00023 Score=72.42 Aligned_cols=34 Identities=29% Similarity=0.372 Sum_probs=30.1
Q ss_pred CCceeEEecCCCCcHHHHHHHHHHHcCCceEEEe
Q 002386 877 LRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVK 910 (929)
Q Consensus 877 ~~sGiLLyGpPGtGKT~LA~alA~e~glnfIsVk 910 (929)
....|+|.|||||||||+|+++|+.+|..|+..+
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d 57 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLD 57 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcch
Confidence 3457899999999999999999999999998754
No 206
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.17 E-value=0.00043 Score=77.43 Aligned_cols=64 Identities=16% Similarity=0.113 Sum_probs=48.7
Q ss_pred cCCCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCc--eeEEecCCCCcHHHHHHHHHHHc----CCceEEEeccccc
Q 002386 843 WDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRS--NVLLYGPPGCGKTHIVGAAAAAC----SLRFISVKGPELL 915 (929)
Q Consensus 843 w~dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~s--GiLLyGpPGtGKT~LA~alA~e~----glnfIsVkg~ELl 915 (929)
.+++.|.+...+.|.+.+.... .. ..+. .++|+||||||||++|+++++++ +..++.+++.+..
T Consensus 16 p~~l~gr~~~~~~l~~~l~~~~------~~---~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~ 85 (389)
T 1fnn_A 16 PKRLPHREQQLQQLDILLGNWL------RN---PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYR 85 (389)
T ss_dssp CSCCTTCHHHHHHHHHHHHHHH------HS---TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCC
T ss_pred CCCCCChHHHHHHHHHHHHHHH------cC---CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCC
Confidence 3678898888888887765211 11 1223 79999999999999999999998 6789999976543
No 207
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=97.17 E-value=0.00025 Score=75.45 Aligned_cols=28 Identities=36% Similarity=0.612 Sum_probs=24.8
Q ss_pred CCceeEEecCCCCcHHHHHHHHHHHcCC
Q 002386 877 LRSNVLLYGPPGCGKTHIVGAAAAACSL 904 (929)
Q Consensus 877 ~~sGiLLyGpPGtGKT~LA~alA~e~gl 904 (929)
.+.+++||||||||||++|.|+|..+++
T Consensus 103 ~~n~~~l~GppgtGKt~~a~ala~~~~l 130 (267)
T 1u0j_A 103 KRNTIWLFGPATTGKTNIAEAIAHTVPF 130 (267)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 3568999999999999999999998644
No 208
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.16 E-value=0.0002 Score=78.09 Aligned_cols=53 Identities=25% Similarity=0.200 Sum_probs=40.5
Q ss_pred CCCCCceeEEecCCCCcHHHHHHHHHHHcCCc--eEEEecccccccccChhhHHH
Q 002386 874 PLRLRSNVLLYGPPGCGKTHIVGAAAAACSLR--FISVKGPELLNKYIGASEQAV 926 (929)
Q Consensus 874 ~lr~~sGiLLyGpPGtGKT~LA~alA~e~gln--fIsVkg~ELl~kyIG~SEq~V 926 (929)
++..++.+||+||||||||+||.++|.+.|.+ |++....|.++.|-...|+.+
T Consensus 119 Gi~~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l 173 (331)
T 2vhj_A 119 HRYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFV 173 (331)
T ss_dssp EEEESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHH
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHH
Confidence 45556668999999999999999999876544 888866777777765555543
No 209
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.16 E-value=0.0013 Score=71.58 Aligned_cols=82 Identities=15% Similarity=0.126 Sum_probs=50.6
Q ss_pred CCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccccccC----------------chhhHHHHHHHHHH
Q 002386 586 HLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLE----------------KGPIIRQALSNFIS 649 (929)
Q Consensus 586 ~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~~~----------------~~~~~~~~l~~~f~ 649 (929)
|++++ -++|+||||+|||+|+-.++..+.... ....+.|+++..-... .....++..-.+.+
T Consensus 25 Gl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g-~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~ 102 (333)
T 3io5_A 25 GMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQY-PDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVN 102 (333)
T ss_dssp CBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHC-TTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHH
T ss_pred CCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcC-CCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHH
Confidence 35555 689999999999999888877664320 0145778887542110 01122222012222
Q ss_pred H---HHhcCCcEEEEcccccccc
Q 002386 650 E---ALDHAPSIVIFDNLDSIIS 669 (929)
Q Consensus 650 ~---a~~~~PsVL~LDEiD~L~~ 669 (929)
. .....|.+|++|-+..+++
T Consensus 103 ~l~~i~~~~~~lvVIDSI~aL~~ 125 (333)
T 3io5_A 103 QLDAIERGEKVVVFIDSLGNLAS 125 (333)
T ss_dssp HHHTCCTTCCEEEEEECSTTCBC
T ss_pred HHHHhhccCceEEEEeccccccc
Confidence 2 2456799999999999984
No 210
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=97.16 E-value=0.0011 Score=79.05 Aligned_cols=28 Identities=21% Similarity=0.211 Sum_probs=23.7
Q ss_pred CCCceEEEECCCCcHHHHHHHHHHHHhc
Q 002386 588 PLPGHILIHGPPGSGKTSLAKAVAKSLE 615 (929)
Q Consensus 588 ~~~~~vLL~GppGtGKTtLaralA~~L~ 615 (929)
.++.-+-|.||+|+|||||++.++..+.
T Consensus 101 ~~Gei~~LvGpNGaGKSTLLkiL~Gll~ 128 (608)
T 3j16_B 101 RPGQVLGLVGTNGIGKSTALKILAGKQK 128 (608)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcCCC
Confidence 3445688999999999999999998664
No 211
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=97.14 E-value=0.0047 Score=72.93 Aligned_cols=169 Identities=15% Similarity=0.147 Sum_probs=92.0
Q ss_pred cchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHH----HhccCccceeeEEEEeccccc
Q 002386 558 WMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAK----SLEHHKDLVAHIVFVCCSRLS 633 (929)
Q Consensus 558 g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~----~L~~~~~~~~~~~~V~~s~L~ 633 (929)
|.+..++++.+.+..-- ....+.+.|+|+.|+||||||+.+++ ...... ....+++.+.-.
T Consensus 132 GR~~~~~~l~~~L~~~~------------~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F---~~~~wv~vs~~~ 196 (549)
T 2a5y_B 132 IREYHVDRVIKKLDEMC------------DLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINY---DSIVWLKDSGTA 196 (549)
T ss_dssp CCHHHHHHHHHHHHHHT------------TSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTB---SEEEEEECCCCS
T ss_pred CchHHHHHHHHHHhccc------------CCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccC---CcEEEEEECCCC
Confidence 78888888888663210 11235689999999999999999996 222211 334445444321
Q ss_pred cCchhhH------------------------HHHHHHHHHHHHhcC-CcEEEEccccccccCCCCCCCCCCchhHHHHHH
Q 002386 634 LEKGPII------------------------RQALSNFISEALDHA-PSIVIFDNLDSIISSSSDPEGSQPSTSVIALTK 688 (929)
Q Consensus 634 ~~~~~~~------------------------~~~l~~~f~~a~~~~-PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~ 688 (929)
......+ ...+...+....... +.+|+|||++..- .+
T Consensus 197 ~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~----------------~~-- 258 (549)
T 2a5y_B 197 PKSTFDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEE----------------TI-- 258 (549)
T ss_dssp TTHHHHHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHH----------------HH--
T ss_pred CCCHHHHHHHHHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCch----------------hh--
Confidence 0000000 011222333333344 7899999997642 11
Q ss_pred HHHHHHHHhcccccCccCCCcEEEEEecCCCCccccccccCCCcceEeeCCCCcHHHHHHHHHHHHhhccc-ccCHHHHH
Q 002386 689 FLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSL-ECSDEILL 767 (929)
Q Consensus 689 ~L~~~ld~~~~~~~~~~~~~~VivIattn~~~~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~-~~~d~~l~ 767 (929)
.+. ... +..||.||+...- ..... .....+.+++.+.++-.++|......... ....+...
T Consensus 259 ~~~----~~~----------gs~ilvTTR~~~v-~~~~~---~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~ 320 (549)
T 2a5y_B 259 RWA----QEL----------RLRCLVTTRDVEI-SNAAS---QTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLN 320 (549)
T ss_dssp HHH----HHT----------TCEEEEEESBGGG-GGGCC---SCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHH
T ss_pred ccc----ccC----------CCEEEEEcCCHHH-HHHcC---CCCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHH
Confidence 111 111 2456666664332 11111 12346889999999998988876432211 11122466
Q ss_pred HHHhhcCCCC
Q 002386 768 DVASKCDGYD 777 (929)
Q Consensus 768 ~LA~~teG~s 777 (929)
.++..|.|..
T Consensus 321 ~I~~~c~GlP 330 (549)
T 2a5y_B 321 KTIELSSGNP 330 (549)
T ss_dssp HHHHHHTTCH
T ss_pred HHHHHhCCCh
Confidence 7888888754
No 212
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.09 E-value=0.0022 Score=66.70 Aligned_cols=30 Identities=27% Similarity=0.424 Sum_probs=24.9
Q ss_pred CCCCCceEEEECCCCcHHHHHHHHHHHHhc
Q 002386 586 HLPLPGHILIHGPPGSGKTSLAKAVAKSLE 615 (929)
Q Consensus 586 ~~~~~~~vLL~GppGtGKTtLaralA~~L~ 615 (929)
|++++.-++|+||||+|||+++..+|..+.
T Consensus 19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~~~~ 48 (247)
T 2dr3_A 19 GIPERNVVLLSGGPGTGKTIFSQQFLWNGL 48 (247)
T ss_dssp SEETTCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 456667799999999999999988877653
No 213
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=97.05 E-value=0.00011 Score=87.53 Aligned_cols=62 Identities=15% Similarity=0.322 Sum_probs=42.1
Q ss_pred CCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHcCCceEE
Q 002386 845 DVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFIS 908 (929)
Q Consensus 845 dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~glnfIs 908 (929)
.|.|.+++|+.+.-.+. -..+....+..++...++||+||||||||+||+++|+.++..++.
T Consensus 296 ~I~G~e~vk~al~~~l~--~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~ 357 (595)
T 3f9v_A 296 SIYGHWELKEALALALF--GGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYT 357 (595)
T ss_dssp TTSCCHHHHHHHTTTTT--CCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECC
T ss_pred hhcChHHHHHHHHHHHh--CCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCCceec
Confidence 46788888877643222 111111222334555589999999999999999999999766554
No 214
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.05 E-value=0.0016 Score=72.37 Aligned_cols=47 Identities=21% Similarity=0.285 Sum_probs=33.1
Q ss_pred cCCCCCceEEEECCCCcHHHHHHHHHHHHhccCcc---ceeeEEEEeccc
Q 002386 585 YHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKD---LVAHIVFVCCSR 631 (929)
Q Consensus 585 ~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~---~~~~~~~V~~s~ 631 (929)
.+++.+.-+.|+||+|+|||||++.++..+..... ....+++++...
T Consensus 126 ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~ 175 (349)
T 1pzn_A 126 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 175 (349)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSS
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCC
Confidence 35677778999999999999999999988632211 012456666543
No 215
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.02 E-value=0.00033 Score=70.29 Aligned_cols=33 Identities=33% Similarity=0.531 Sum_probs=29.3
Q ss_pred CceeEEecCCCCcHHHHHHHHHHH-cCCceEEEe
Q 002386 878 RSNVLLYGPPGCGKTHIVGAAAAA-CSLRFISVK 910 (929)
Q Consensus 878 ~sGiLLyGpPGtGKT~LA~alA~e-~glnfIsVk 910 (929)
+..|+|.|+||||||++|+++|.. +|+.||..+
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d 43 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAELDGFQHLEVG 43 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHH
Confidence 456899999999999999999999 799998854
No 216
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.01 E-value=0.0015 Score=71.63 Aligned_cols=84 Identities=17% Similarity=0.172 Sum_probs=51.9
Q ss_pred CCCCCceEEEECCCCcHHHHHHHHHHHHhccC------------ccc-eeeEEEEeccccc-cC----------------
Q 002386 586 HLPLPGHILIHGPPGSGKTSLAKAVAKSLEHH------------KDL-VAHIVFVCCSRLS-LE---------------- 635 (929)
Q Consensus 586 ~~~~~~~vLL~GppGtGKTtLaralA~~L~~~------------~~~-~~~~~~V~~s~L~-~~---------------- 635 (929)
|++++.-++|+|+||+|||+++..+|...... ... ...+.|++...-. ..
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~g~~~~~~ 173 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHAGIDGQTV 173 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHHTCCHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHcCCCHHHH
Confidence 46666779999999999999999999864211 101 0467778776421 11
Q ss_pred ----------chhhHHHHHHHHHHHHHh-cCCcEEEEcccccccc
Q 002386 636 ----------KGPIIRQALSNFISEALD-HAPSIVIFDNLDSIIS 669 (929)
Q Consensus 636 ----------~~~~~~~~l~~~f~~a~~-~~PsVL~LDEiD~L~~ 669 (929)
........+..+...... ..+.+|+||.+..++.
T Consensus 174 ~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~ 218 (322)
T 2i1q_A 174 LDNTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFR 218 (322)
T ss_dssp HHTEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSHHHH
T ss_pred hcCEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHHHHH
Confidence 001111122233333344 5678999999998874
No 217
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.00 E-value=0.00037 Score=77.17 Aligned_cols=50 Identities=26% Similarity=0.444 Sum_probs=38.7
Q ss_pred CccCCCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHc
Q 002386 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC 902 (929)
Q Consensus 841 ~~w~dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~ 902 (929)
..|+++.|.+.+.+.|+..+. + .-+.+. +||+||||||||++|+++|++.
T Consensus 11 ~~~~~~vg~~~~~~~l~~~~~---~--------~~~~~~-~ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 11 KSLNALSHNEELTNFLKSLSD---Q--------PRDLPH-LLLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp CSGGGCCSCHHHHHHHHTTTT---C--------TTCCCC-EEEECSTTSSHHHHHHTHHHHH
T ss_pred CCHHHhcCCHHHHHHHHHHHh---h--------CCCCCe-EEEECCCCCCHHHHHHHHHHHH
Confidence 468889999988888876541 0 112334 9999999999999999999953
No 218
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.99 E-value=0.0004 Score=69.17 Aligned_cols=34 Identities=41% Similarity=0.666 Sum_probs=30.1
Q ss_pred CCceeEEecCCCCcHHHHHHHHHHHcCCceEEEe
Q 002386 877 LRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVK 910 (929)
Q Consensus 877 ~~sGiLLyGpPGtGKT~LA~alA~e~glnfIsVk 910 (929)
.+..|+|.|+||||||++|+++|+.+|..|+..+
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~d 43 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKSGLKYINVG 43 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEHH
Confidence 3456999999999999999999999999988764
No 219
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.96 E-value=0.0024 Score=66.53 Aligned_cols=28 Identities=29% Similarity=0.478 Sum_probs=23.7
Q ss_pred CCCCCceEEEECCCCcHHHHHHHHHHHH
Q 002386 586 HLPLPGHILIHGPPGSGKTSLAKAVAKS 613 (929)
Q Consensus 586 ~~~~~~~vLL~GppGtGKTtLaralA~~ 613 (929)
|++++.-++|+|+||+|||+++..+|..
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~~~ 53 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 4666677999999999999999887754
No 220
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.92 E-value=0.001 Score=70.34 Aligned_cols=40 Identities=23% Similarity=0.314 Sum_probs=33.8
Q ss_pred CCCCceeEEecCCCCcHHHHHHHHHHHcCCceEEEecccc
Q 002386 875 LRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPEL 914 (929)
Q Consensus 875 lr~~sGiLLyGpPGtGKT~LA~alA~e~glnfIsVkg~EL 914 (929)
...+.-++|.|+|||||||+|+++|+.++..++.+++-.+
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 3445678899999999999999999999877788877665
No 221
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=96.91 E-value=0.0064 Score=71.26 Aligned_cols=140 Identities=16% Similarity=0.256 Sum_probs=84.8
Q ss_pred ceEEEECCCCcHHHHHHHHHHHHhccC-ccceeeEEEEeccc--cc---------c---CchhhHHHHHHH---------
Q 002386 591 GHILIHGPPGSGKTSLAKAVAKSLEHH-KDLVAHIVFVCCSR--LS---------L---EKGPIIRQALSN--------- 646 (929)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~L~~~-~~~~~~~~~V~~s~--L~---------~---~~~~~~~~~l~~--------- 646 (929)
.|+|+.|.+|+|||++++.+...+... ......++.+|+.. |. . .........+..
T Consensus 215 pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~ev~lilIDpKg~eLs~~~~lPHl~~~Vvtd~~~a~~~L~~lv~EMerR~ 294 (574)
T 2iut_A 215 PHLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIMIDPKMLELSIYEGIPHLLCPVVTDMKEAANALRWSVAEMERRY 294 (574)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECSSSHHHHTTTTCTTBSSSCBCCHHHHHHHHHHHHHHHHHHH
T ss_pred CeeEEECCCCCCHHHHHHHHHHHHHHhCCCcceEEEEeCCChhhhHhhcCCCcccceeeCCHHHHHHHHHHHHHHHHHHH
Confidence 589999999999999999988766432 12235677788763 10 0 011111111111
Q ss_pred -HHHHH-----------H---------------------------hcCC-cEEEEccccccccCCCCCCCCCCchhHHHH
Q 002386 647 -FISEA-----------L---------------------------DHAP-SIVIFDNLDSIISSSSDPEGSQPSTSVIAL 686 (929)
Q Consensus 647 -~f~~a-----------~---------------------------~~~P-sVL~LDEiD~L~~~~~~~~~~~~~~~~~~l 686 (929)
+|... . ..-| -+|+|||++.++... . ..+
T Consensus 295 ~ll~~~gvrni~~Yn~~~~~~~~~G~~~~dp~~~~~~~~~~~~~~~~lP~ivvVIDE~~~L~~~~-------~----~~~ 363 (574)
T 2iut_A 295 RLMAAMGVRNLAGFNRKVKDAEEAGTPLTDPLFRRESPDDEPPQLSTLPTIVVVVDEFADMMMIV-------G----KKV 363 (574)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHTTCCCBCTTCCCCSTTCCCCBCCCCCEEEEEESCCTTHHHHT-------C----HHH
T ss_pred HHHHHcCCccHHHHHHHHHHHhhcccccccccccccccccccccccCCCcEEEEEeCHHHHhhhh-------h----HHH
Confidence 11110 0 0122 489999999887311 0 133
Q ss_pred HHHHHHHHHHhcccccCccCCCcEEEEEecCCCC--ccccccccCCCcceEeeCCCCcHHHHHHHHH
Q 002386 687 TKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLE--KIPQSLTSSGRFDFHVQLPAPAASERKAILE 751 (929)
Q Consensus 687 ~~~L~~~ld~~~~~~~~~~~~~~VivIattn~~~--~L~~~L~~~~Rf~~~i~l~~Pd~~eR~~IL~ 751 (929)
...|.++...-.. .+|.+|.+|+++. .++..++. -|...|.|...+..+...||.
T Consensus 364 ~~~L~~Iar~GRa--------~GIhLIlaTQRPs~d~I~~~Ira--n~~~RI~lrv~s~~Dsr~ILd 420 (574)
T 2iut_A 364 EELIARIAQKARA--------AGIHLILATQRPSVDVITGLIKA--NIPTRIAFQVSSKIDSRTILD 420 (574)
T ss_dssp HHHHHHHHHHCTT--------TTEEEEEEESCCCTTTSCHHHHH--TCCEEEEECCSCHHHHHHHHS
T ss_pred HHHHHHHHHHHhh--------CCeEEEEEecCcccccccHHHHh--hhccEEEEEcCCHHHHHHhcC
Confidence 3444444433221 1588899999887 78888887 677788888888888777764
No 222
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.90 E-value=0.0032 Score=68.57 Aligned_cols=98 Identities=19% Similarity=0.235 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccccccC------
Q 002386 562 TASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLE------ 635 (929)
Q Consensus 562 ~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~~~------ 635 (929)
..+.+.+.+..++.+..+ -.+....+.-++|.|++|+||||+++.+|..+.... ..+..+++......
T Consensus 79 ~~~~~~~~l~~~l~~~~~---~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g---~kV~lv~~D~~r~~a~eqL~ 152 (306)
T 1vma_A 79 ALESLKEIILEILNFDTK---LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEG---KSVVLAAADTFRAAAIEQLK 152 (306)
T ss_dssp HHHHHHHHHHHHTCSCCC---CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTT---CCEEEEEECTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCC---CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcC---CEEEEEccccccHHHHHHHH
Confidence 444555555555543321 112234456799999999999999999999886443 23444444322110
Q ss_pred --------------chhhHHHHHHHHHHHHHhcCCcEEEEcccc
Q 002386 636 --------------KGPIIRQALSNFISEALDHAPSIVIFDNLD 665 (929)
Q Consensus 636 --------------~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD 665 (929)
..+.......+.+..+....|.++++|+.-
T Consensus 153 ~~~~~~gl~~~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg 196 (306)
T 1vma_A 153 IWGERVGATVISHSEGADPAAVAFDAVAHALARNKDVVIIDTAG 196 (306)
T ss_dssp HHHHHHTCEEECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECC
T ss_pred HHHHHcCCcEEecCCccCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 011112222334555566788999999774
No 223
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.89 E-value=0.0011 Score=65.61 Aligned_cols=25 Identities=20% Similarity=0.500 Sum_probs=23.2
Q ss_pred ceEEEECCCCcHHHHHHHHHHHHhc
Q 002386 591 GHILIHGPPGSGKTSLAKAVAKSLE 615 (929)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~L~ 615 (929)
..|+|+|+||+||||+++++++.++
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4599999999999999999999986
No 224
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.87 E-value=0.00063 Score=66.88 Aligned_cols=32 Identities=22% Similarity=0.374 Sum_probs=29.0
Q ss_pred ceeEEecCCCCcHHHHHHHHHHHcCCceEEEe
Q 002386 879 SNVLLYGPPGCGKTHIVGAAAAACSLRFISVK 910 (929)
Q Consensus 879 sGiLLyGpPGtGKT~LA~alA~e~glnfIsVk 910 (929)
..|+|.|+|||||||+|+.+|+.+|++|+..+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~D 39 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDTD 39 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 36889999999999999999999999998753
No 225
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=96.86 E-value=0.0011 Score=72.36 Aligned_cols=52 Identities=13% Similarity=0.160 Sum_probs=37.6
Q ss_pred CchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHc------CCceEEEecc
Q 002386 848 GLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC------SLRFISVKGP 912 (929)
Q Consensus 848 GL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~------glnfIsVkg~ 912 (929)
|.+++.+.|+..+.-. + ...+|||||||||||++|+++|+.| ..+|+.+++.
T Consensus 1 g~~~~~~~L~~~i~~~------------~-~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~ 58 (305)
T 2gno_A 1 GAKDQLETLKRIIEKS------------E-GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPE 58 (305)
T ss_dssp ---CHHHHHHHHHHTC------------S-SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCS
T ss_pred ChHHHHHHHHHHHHCC------------C-CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCC
Confidence 4566666777666521 2 3479999999999999999999986 4578888765
No 226
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.86 E-value=0.00054 Score=68.71 Aligned_cols=40 Identities=28% Similarity=0.297 Sum_probs=33.4
Q ss_pred CCCCceeEEecCCCCcHHHHHHHHHHHcCCceEEEecccc
Q 002386 875 LRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPEL 914 (929)
Q Consensus 875 lr~~sGiLLyGpPGtGKT~LA~alA~e~glnfIsVkg~EL 914 (929)
+..+.-+.|.|||||||||+++++|+..+..+|.+++-++
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~ 45 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDL 45 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccch
Confidence 3344567899999999999999999988888888887665
No 227
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.86 E-value=0.00061 Score=72.66 Aligned_cols=74 Identities=19% Similarity=0.344 Sum_probs=43.9
Q ss_pred CCCceEEEECCCCcHHHHHHHHHHHHhccC-ccceeeEEEEe--cccccc-------C-chhhHHHHHHHHHHHHHhcCC
Q 002386 588 PLPGHILIHGPPGSGKTSLAKAVAKSLEHH-KDLVAHIVFVC--CSRLSL-------E-KGPIIRQALSNFISEALDHAP 656 (929)
Q Consensus 588 ~~~~~vLL~GppGtGKTtLaralA~~L~~~-~~~~~~~~~V~--~s~L~~-------~-~~~~~~~~l~~~f~~a~~~~P 656 (929)
+++..++|.||+|+||||++++++..+... .+ .+.... ...+.. . ..+.-...+...+..+....|
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G---~I~~~g~~i~~~~~~~~~~v~q~~~gl~~~~l~~~la~aL~~~p 99 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYINQTKSY---HIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDP 99 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCC---EEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHHHHCC
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhCCCCCCC---EEEEcCCcceeecCCcceeeeHHHhCCCHHHHHHHHHHHHhhCC
Confidence 445679999999999999999999987532 21 111111 000000 0 000000123455666666789
Q ss_pred cEEEEccc
Q 002386 657 SIVIFDNL 664 (929)
Q Consensus 657 sVL~LDEi 664 (929)
.+|++||.
T Consensus 100 ~illlDEp 107 (261)
T 2eyu_A 100 DVIFVGEM 107 (261)
T ss_dssp SEEEESCC
T ss_pred CEEEeCCC
Confidence 99999998
No 228
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.79 E-value=0.00057 Score=76.21 Aligned_cols=73 Identities=25% Similarity=0.371 Sum_probs=45.0
Q ss_pred CceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEE-ecccccc---------CchhhHHHHHHHHHHHHHhcCCcEE
Q 002386 590 PGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFV-CCSRLSL---------EKGPIIRQALSNFISEALDHAPSIV 659 (929)
Q Consensus 590 ~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V-~~s~L~~---------~~~~~~~~~l~~~f~~a~~~~PsVL 659 (929)
++.++|.||+||||||++++++..+..... ..++.+ +..++.. ...+.-...+.+.+..+....|.+|
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~~~~~~~--~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~Pdvi 200 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDYLNNTKY--HHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDII 200 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHHHHCC--CEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcccCCCC--cEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEE
Confidence 356999999999999999999998864311 111111 1111100 0001001224456777778899999
Q ss_pred EEccc
Q 002386 660 IFDNL 664 (929)
Q Consensus 660 ~LDEi 664 (929)
++||+
T Consensus 201 llDEp 205 (356)
T 3jvv_A 201 LVGEM 205 (356)
T ss_dssp EESCC
T ss_pred ecCCC
Confidence 99998
No 229
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.79 E-value=0.011 Score=64.63 Aligned_cols=41 Identities=22% Similarity=0.280 Sum_probs=31.6
Q ss_pred CCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEec
Q 002386 586 HLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (929)
Q Consensus 586 ~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~ 629 (929)
|++++.-++|.|+||+|||+++..+|..+.... .++.+++.
T Consensus 64 Gl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g---~~vl~~sl 104 (315)
T 3bh0_A 64 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDND---DVVNLHSL 104 (315)
T ss_dssp SBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTT---CEEEEEES
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcC---CeEEEEEC
Confidence 466777799999999999999999998765433 34556654
No 230
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=96.78 E-value=0.0081 Score=77.47 Aligned_cols=173 Identities=12% Similarity=0.133 Sum_probs=93.7
Q ss_pred cccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhcc-CccceeeEEEEecccc
Q 002386 554 SSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEH-HKDLVAHIVFVCCSRL 632 (929)
Q Consensus 554 ~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~-~~~~~~~~~~V~~s~L 632 (929)
..+.|.+..++++.+.+... -...+-+.|+|+.|+|||+||+.+++.... .......+..++.+..
T Consensus 124 ~~~vgR~~~~~~l~~~l~~~-------------~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~ 190 (1249)
T 3sfz_A 124 VIFVTRKKLVHAIQQKLWKL-------------NGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQ 190 (1249)
T ss_dssp SSCCCCHHHHHHHHHHHHTT-------------TTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSC
T ss_pred ceeccHHHHHHHHHHHHhhc-------------cCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCc
Confidence 45678888888888755311 112355889999999999999998865311 1111123445554331
Q ss_pred ccCc-h--------------------hhHHHHHHHHHHHHHhc--CCcEEEEccccccccCCCCCCCCCCchhHHHHHHH
Q 002386 633 SLEK-G--------------------PIIRQALSNFISEALDH--APSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKF 689 (929)
Q Consensus 633 ~~~~-~--------------------~~~~~~l~~~f~~a~~~--~PsVL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~ 689 (929)
.... . ......+.+.+...... ++.+|+|||++... .
T Consensus 191 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~----------------~---- 250 (1249)
T 3sfz_A 191 DKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPW----------------V---- 250 (1249)
T ss_dssp CHHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHH----------------H----
T ss_pred CchHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHH----------------H----
Confidence 1000 0 00011122222222223 37899999997531 1
Q ss_pred HHHHHHHhcccccCccCCCcEEEEEecCCCCccccccccCCCcceEeeCCC-CcHHHHHHHHHHHHhhcccccCHHHHHH
Q 002386 690 LVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPA-PAASERKAILEHEIQRRSLECSDEILLD 768 (929)
Q Consensus 690 L~~~ld~~~~~~~~~~~~~~VivIattn~~~~L~~~L~~~~Rf~~~i~l~~-Pd~~eR~~IL~~~l~~~~~~~~d~~l~~ 768 (929)
++.+. . +..||.||+...-.... . .....+.+++ .+.++-.++|.......... .++....
T Consensus 251 ----~~~~~---~------~~~ilvTtR~~~~~~~~-~---~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~-~~~~~~~ 312 (1249)
T 3sfz_A 251 ----LKAFD---N------QCQILLTTRDKSVTDSV-M---GPKHVVPVESGLGREKGLEILSLFVNMKKED-LPAEAHS 312 (1249)
T ss_dssp ----HTTTC---S------SCEEEEEESSTTTTTTC-C---SCBCCEECCSSCCHHHHHHHHHHHHTSCSTT-CCTHHHH
T ss_pred ----HHhhc---C------CCEEEEEcCCHHHHHhh-c---CCceEEEecCCCCHHHHHHHHHHhhCCChhh-CcHHHHH
Confidence 11111 1 24667777654322111 1 1224567775 88888888888766432222 2234678
Q ss_pred HHhhcCCCC
Q 002386 769 VASKCDGYD 777 (929)
Q Consensus 769 LA~~teG~s 777 (929)
|++.|.|..
T Consensus 313 i~~~~~glP 321 (1249)
T 3sfz_A 313 IIKECKGSP 321 (1249)
T ss_dssp HHHHTTTCH
T ss_pred HHHHhCCCH
Confidence 888888854
No 231
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.78 E-value=0.0064 Score=65.59 Aligned_cols=32 Identities=16% Similarity=0.163 Sum_probs=27.3
Q ss_pred CCCCCceEEEECCCCcHHHHHHHHHHHHhccC
Q 002386 586 HLPLPGHILIHGPPGSGKTSLAKAVAKSLEHH 617 (929)
Q Consensus 586 ~~~~~~~vLL~GppGtGKTtLaralA~~L~~~ 617 (929)
+++++.-++|.|+||+|||||++.+|..+...
T Consensus 31 ~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~ 62 (296)
T 1cr0_A 31 GARGGEVIMVTSGSGMGKSTFVRQQALQWGTA 62 (296)
T ss_dssp SBCTTCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 46666779999999999999999999987543
No 232
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.78 E-value=0.00068 Score=68.28 Aligned_cols=25 Identities=28% Similarity=0.288 Sum_probs=20.3
Q ss_pred ceEEEECCCCcHHHHHHHHHHHHhc
Q 002386 591 GHILIHGPPGSGKTSLAKAVAKSLE 615 (929)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~L~ 615 (929)
.-++++||+|+||||++..++..+.
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~ 28 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYK 28 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3488999999999999977766653
No 233
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.76 E-value=0.0063 Score=65.14 Aligned_cols=31 Identities=23% Similarity=0.269 Sum_probs=26.4
Q ss_pred CCCCCceEEEECCCCcHHHHHHHHHHHHhcc
Q 002386 586 HLPLPGHILIHGPPGSGKTSLAKAVAKSLEH 616 (929)
Q Consensus 586 ~~~~~~~vLL~GppGtGKTtLaralA~~L~~ 616 (929)
+++.+.-++|+||+|+|||||++.++..+..
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~~ 56 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIAG 56 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHHT
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 4666677999999999999999999987643
No 234
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.73 E-value=0.001 Score=67.42 Aligned_cols=31 Identities=39% Similarity=0.509 Sum_probs=28.4
Q ss_pred ceeEEecCCCCcHHHHHHHHHHHcCCceEEE
Q 002386 879 SNVLLYGPPGCGKTHIVGAAAAACSLRFISV 909 (929)
Q Consensus 879 sGiLLyGpPGtGKT~LA~alA~e~glnfIsV 909 (929)
.-|+|.|+|||||||+|+.+|+.+|+.+|++
T Consensus 21 ~~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 4588999999999999999999999998876
No 235
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=96.73 E-value=0.014 Score=67.82 Aligned_cols=76 Identities=13% Similarity=0.272 Sum_probs=48.5
Q ss_pred CCc-EEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCCCcEEEEEecCCCC--ccccccccCCC
Q 002386 655 APS-IVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLE--KIPQSLTSSGR 731 (929)
Q Consensus 655 ~Ps-VL~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~VivIattn~~~--~L~~~L~~~~R 731 (929)
.|. +|++||+..++. .....+.+.+..+....... ++.+|.+|+++. .++..++. .
T Consensus 296 lP~ivlvIDE~~~ll~-----------~~~~~~~~~l~~Lar~gRa~--------GI~LIlaTQrp~~dvl~~~i~~--n 354 (512)
T 2ius_A 296 EPYIVVLVDEFADLMM-----------TVGKKVEELIARLAQKARAA--------GIHLVLATQRPSVDVITGLIKA--N 354 (512)
T ss_dssp CCEEEEEEETHHHHHH-----------HHHHHHHHHHHHHHHHCGGG--------TEEEEEEESCCCTTTSCHHHHH--H
T ss_pred CCcEEEEEeCHHHHHh-----------hhhHHHHHHHHHHHHHhhhC--------CcEEEEEecCCccccccHHHHh--h
Confidence 354 899999987762 00123333333333222111 477888888876 57777777 6
Q ss_pred cceEeeCCCCcHHHHHHHHH
Q 002386 732 FDFHVQLPAPAASERKAILE 751 (929)
Q Consensus 732 f~~~i~l~~Pd~~eR~~IL~ 751 (929)
|...|.|...+..+...|+.
T Consensus 355 ~~~RI~lrv~s~~dsr~ilg 374 (512)
T 2ius_A 355 IPTRIAFTVSSKIDSRTILD 374 (512)
T ss_dssp CCEEEEECCSSHHHHHHHHS
T ss_pred cCCeEEEEcCCHHHHHHhcC
Confidence 77778888888888888775
No 236
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.73 E-value=0.0038 Score=64.76 Aligned_cols=27 Identities=30% Similarity=0.162 Sum_probs=22.6
Q ss_pred ceEEEECCCCcHHHHHHHHHHHHhccC
Q 002386 591 GHILIHGPPGSGKTSLAKAVAKSLEHH 617 (929)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~L~~~ 617 (929)
.-++++|++|+||||++..++..+...
T Consensus 13 ~i~litG~mGsGKTT~ll~~~~r~~~~ 39 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIRRLHRLEYA 39 (223)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 448889999999999999888887544
No 237
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.72 E-value=0.0014 Score=70.90 Aligned_cols=36 Identities=28% Similarity=0.360 Sum_probs=29.7
Q ss_pred CCCceeEEecCCCCcHHHHHHHHHHHcCCceEEEec
Q 002386 876 RLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKG 911 (929)
Q Consensus 876 r~~sGiLLyGpPGtGKT~LA~alA~e~glnfIsVkg 911 (929)
..+.-++|.|||||||||+|++++.+++..+++|++
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~ 66 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDN 66 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEec
Confidence 345568899999999999999999998656677765
No 238
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.69 E-value=0.00093 Score=69.14 Aligned_cols=39 Identities=23% Similarity=0.366 Sum_probs=31.0
Q ss_pred CCCCceeEEecCCCCcHHHHHHHHHHHcCCceEEEeccccc
Q 002386 875 LRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELL 915 (929)
Q Consensus 875 lr~~sGiLLyGpPGtGKT~LA~alA~e~glnfIsVkg~ELl 915 (929)
++-+.-|+|.|||||||+|.|+.+|+.+|+..|+. .|+|
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hIst--Gdll 64 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHLSS--GDLL 64 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHHHCCEEECH--HHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHCCceEcH--HHHH
Confidence 34445688899999999999999999999877664 4444
No 239
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.66 E-value=0.00088 Score=68.02 Aligned_cols=28 Identities=39% Similarity=0.527 Sum_probs=24.6
Q ss_pred CCCceEEEECCCCcHHHHHHHHHHHHhc
Q 002386 588 PLPGHILIHGPPGSGKTSLAKAVAKSLE 615 (929)
Q Consensus 588 ~~~~~vLL~GppGtGKTtLaralA~~L~ 615 (929)
.+...++|.|++||||||+++++|+.++
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 3446799999999999999999999987
No 240
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.63 E-value=0.0012 Score=68.79 Aligned_cols=31 Identities=26% Similarity=0.451 Sum_probs=28.6
Q ss_pred ceeEEecCCCCcHHHHHHHHHHHcCCceEEE
Q 002386 879 SNVLLYGPPGCGKTHIVGAAAAACSLRFISV 909 (929)
Q Consensus 879 sGiLLyGpPGtGKT~LA~alA~e~glnfIsV 909 (929)
..|+|.|+|||||||+|+++|+.+|+.||+.
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 47 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT 47 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 4689999999999999999999999988876
No 241
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.62 E-value=0.00089 Score=75.18 Aligned_cols=75 Identities=19% Similarity=0.328 Sum_probs=45.3
Q ss_pred CCCCceEEEECCCCcHHHHHHHHHHHHhccC-ccceeeEEEEecc-cc--------ccC-chhhHHHHHHHHHHHHHhcC
Q 002386 587 LPLPGHILIHGPPGSGKTSLAKAVAKSLEHH-KDLVAHIVFVCCS-RL--------SLE-KGPIIRQALSNFISEALDHA 655 (929)
Q Consensus 587 ~~~~~~vLL~GppGtGKTtLaralA~~L~~~-~~~~~~~~~V~~s-~L--------~~~-~~~~~~~~l~~~f~~a~~~~ 655 (929)
..+++.++|.||+|+||||++++++..+... .+ .+..+... ++ ... ..+.-...+...+..+....
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g---~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L~~~ 209 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSY---HIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALRED 209 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCC---EEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHHHHTTSC
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCc---EEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHHHHhhhC
Confidence 4556679999999999999999999987543 21 12111110 00 000 00000012344566666678
Q ss_pred CcEEEEccc
Q 002386 656 PSIVIFDNL 664 (929)
Q Consensus 656 PsVL~LDEi 664 (929)
|.+|++||+
T Consensus 210 pd~illdE~ 218 (372)
T 2ewv_A 210 PDVIFVGEM 218 (372)
T ss_dssp CSEEEESCC
T ss_pred cCEEEECCC
Confidence 999999998
No 242
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.61 E-value=0.00085 Score=67.57 Aligned_cols=31 Identities=19% Similarity=0.369 Sum_probs=27.9
Q ss_pred ceeEEecCCCCcHHHHHHHHHHHcCCceEEE
Q 002386 879 SNVLLYGPPGCGKTHIVGAAAAACSLRFISV 909 (929)
Q Consensus 879 sGiLLyGpPGtGKT~LA~alA~e~glnfIsV 909 (929)
.-|+|.|+|||||||+|+.+|+.+|..+++.
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 43 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYGFTHLST 43 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 3588999999999999999999999888775
No 243
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.61 E-value=0.0013 Score=65.99 Aligned_cols=31 Identities=19% Similarity=0.343 Sum_probs=28.5
Q ss_pred ceeEEecCCCCcHHHHHHHHHHHcCCceEEE
Q 002386 879 SNVLLYGPPGCGKTHIVGAAAAACSLRFISV 909 (929)
Q Consensus 879 sGiLLyGpPGtGKT~LA~alA~e~glnfIsV 909 (929)
.-|+|.|+|||||||+|+.+|+.+|..++..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~ 40 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQKYGYTHLST 40 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 4588999999999999999999999999975
No 244
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.57 E-value=0.0075 Score=69.46 Aligned_cols=42 Identities=17% Similarity=0.353 Sum_probs=31.3
Q ss_pred CCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEec
Q 002386 586 HLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (929)
Q Consensus 586 ~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~ 629 (929)
|++++.-++|.|+||+|||+++..+|..+....+ ..+.+++.
T Consensus 199 Gl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g--~~Vl~~s~ 240 (454)
T 2r6a_A 199 GFQRSDLIIVAARPSVGKTAFALNIAQNVATKTN--ENVAIFSL 240 (454)
T ss_dssp SBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSS--CCEEEEES
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCC--CcEEEEEC
Confidence 5677778999999999999999999988753222 23555543
No 245
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.57 E-value=0.0046 Score=65.26 Aligned_cols=40 Identities=28% Similarity=0.460 Sum_probs=30.5
Q ss_pred CCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEecccc
Q 002386 587 LPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRL 632 (929)
Q Consensus 587 ~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L 632 (929)
...+..++|.|+|||||||+++.+++.++ ..++.++...+
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l~------~~~~~~~~D~~ 68 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKEFQ------GNIVIIDGDSF 68 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHHTT------TCCEEECGGGG
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHhcC------CCcEEEecHHH
Confidence 34456799999999999999999999886 33445555544
No 246
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.53 E-value=0.0017 Score=65.95 Aligned_cols=31 Identities=32% Similarity=0.593 Sum_probs=27.7
Q ss_pred ceeEEecCCCCcHHHHHHHHHHHcCCceEEE
Q 002386 879 SNVLLYGPPGCGKTHIVGAAAAACSLRFISV 909 (929)
Q Consensus 879 sGiLLyGpPGtGKT~LA~alA~e~glnfIsV 909 (929)
.-|+|.|+|||||||+|+.+|+.+|..++..
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~ 49 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEACGYPFIEG 49 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHHTCCEEEG
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCEEEeC
Confidence 4588999999999999999999999887763
No 247
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.53 E-value=0.0018 Score=65.77 Aligned_cols=37 Identities=16% Similarity=0.224 Sum_probs=29.5
Q ss_pred CceeEEecCCCCcHHHHHHHHHHHc---CCceEEEecccc
Q 002386 878 RSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPEL 914 (929)
Q Consensus 878 ~sGiLLyGpPGtGKT~LA~alA~e~---glnfIsVkg~EL 914 (929)
+.-+.|.||+||||||+|+++|+.+ |...+.+++-++
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNV 64 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchh
Confidence 4457789999999999999999988 665456666555
No 248
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.50 E-value=0.0012 Score=65.73 Aligned_cols=25 Identities=36% Similarity=0.484 Sum_probs=23.5
Q ss_pred ceEEEECCCCcHHHHHHHHHHHHhc
Q 002386 591 GHILIHGPPGSGKTSLAKAVAKSLE 615 (929)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~L~ 615 (929)
..|+|+|++||||||+++.+|+.++
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5699999999999999999999987
No 249
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.47 E-value=0.0023 Score=73.89 Aligned_cols=28 Identities=36% Similarity=0.646 Sum_probs=24.6
Q ss_pred ceEEEECCCCcHHHHHHHHHHHHhccCc
Q 002386 591 GHILIHGPPGSGKTSLAKAVAKSLEHHK 618 (929)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~L~~~~ 618 (929)
+.++|.|+||||||+++.+++..+....
T Consensus 46 ~~~li~G~aGTGKT~ll~~~~~~l~~~~ 73 (459)
T 3upu_A 46 HHVTINGPAGTGATTLTKFIIEALISTG 73 (459)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTT
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHhcC
Confidence 3799999999999999999999986543
No 250
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.47 E-value=0.018 Score=59.62 Aligned_cols=28 Identities=21% Similarity=0.280 Sum_probs=24.1
Q ss_pred ceEEEECCCCcHHHHHHHHHHHHhccCc
Q 002386 591 GHILIHGPPGSGKTSLAKAVAKSLEHHK 618 (929)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~L~~~~ 618 (929)
-.+++.|++|+||||++-.+|..+...+
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G 34 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQG 34 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTT
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCC
Confidence 3599999999999999999999886543
No 251
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.46 E-value=0.0016 Score=65.91 Aligned_cols=32 Identities=25% Similarity=0.373 Sum_probs=28.3
Q ss_pred ceeEEecCCCCcHHHHHHHHHHHcCCceEEEe
Q 002386 879 SNVLLYGPPGCGKTHIVGAAAAACSLRFISVK 910 (929)
Q Consensus 879 sGiLLyGpPGtGKT~LA~alA~e~glnfIsVk 910 (929)
.-|+|.|+|||||||+|+.+|+.+|..+|+.+
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d 47 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAG 47 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSCEEEEHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCceEEeHH
Confidence 35789999999999999999999999888753
No 252
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.46 E-value=0.011 Score=67.52 Aligned_cols=101 Identities=16% Similarity=0.182 Sum_probs=61.3
Q ss_pred hHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEecccccc------
Q 002386 561 TTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSL------ 634 (929)
Q Consensus 561 ~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~~------ 634 (929)
..++.+.+.+..++.+..... ... ..|.-++++|++|+||||++..+|..+.... ..+..++|..+..
T Consensus 74 ~v~~~l~~eL~~~L~~~~~~~--~~~-~~p~vIlivG~~G~GKTTt~~kLA~~l~~~G---~kVllv~~D~~R~aa~eqL 147 (443)
T 3dm5_A 74 HIIKIVYEELTKFLGTEAKPI--EIK-EKPTILLMVGIQGSGKTTTVAKLARYFQKRG---YKVGVVCSDTWRPGAYHQL 147 (443)
T ss_dssp HHHHHHHHHHHHHTTSSCCCC--CCC-SSSEEEEEECCTTSSHHHHHHHHHHHHHTTT---CCEEEEECCCSSTHHHHHH
T ss_pred HHHHHHHHHHHHHhcCccccc--ccC-CCCeEEEEECcCCCCHHHHHHHHHHHHHHCC---CeEEEEeCCCcchhHHHHH
Confidence 445556666655554321111 111 2356799999999999999999999886543 3345555543211
Q ss_pred --------------CchhhHHHHHHHHHHHHHhcCCcEEEEcccccc
Q 002386 635 --------------EKGPIIRQALSNFISEALDHAPSIVIFDNLDSI 667 (929)
Q Consensus 635 --------------~~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L 667 (929)
.........+.+.+..+....+.++|+|....+
T Consensus 148 ~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a~~~~~DvVIIDTaGrl 194 (443)
T 3dm5_A 148 RQLLDRYHIEVFGNPQEKDAIKLAKEGVDYFKSKGVDIIIVDTAGRH 194 (443)
T ss_dssp HHHHGGGTCEEECCTTCCCHHHHHHHHHHHHHHTTCSEEEEECCCCS
T ss_pred HHHHHhcCCcEEecCCCCCHHHHHHHHHHHHHhCCCCEEEEECCCcc
Confidence 011223344556677777777899999987443
No 253
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.46 E-value=0.0022 Score=63.36 Aligned_cols=34 Identities=21% Similarity=0.280 Sum_probs=29.4
Q ss_pred CceeEEecCCCCcHHHHHHHHHHHcCCceEEEec
Q 002386 878 RSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKG 911 (929)
Q Consensus 878 ~sGiLLyGpPGtGKT~LA~alA~e~glnfIsVkg 911 (929)
+.-+.|.|||||||||+|+++|+.+|..++..+.
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~~d~ 41 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDF 41 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHTCEEEEGGG
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhhCcEEEeCcc
Confidence 3457899999999999999999999999888543
No 254
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.45 E-value=0.011 Score=67.75 Aligned_cols=42 Identities=19% Similarity=0.210 Sum_probs=31.3
Q ss_pred CCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEec
Q 002386 586 HLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (929)
Q Consensus 586 ~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~ 629 (929)
|++++.-++|+|+||+|||+++..+|.......+ .++.+++.
T Consensus 196 Gl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g--~~vl~~sl 237 (444)
T 2q6t_A 196 TLGPGSLNIIAARPAMGKTAFALTIAQNAALKEG--VGVGIYSL 237 (444)
T ss_dssp CCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTC--CCEEEEES
T ss_pred CcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCC--CeEEEEEC
Confidence 5677777999999999999999999987754322 34555544
No 255
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.45 E-value=0.0058 Score=65.92 Aligned_cols=38 Identities=32% Similarity=0.564 Sum_probs=28.9
Q ss_pred CCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEecccc
Q 002386 589 LPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRL 632 (929)
Q Consensus 589 ~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L 632 (929)
.+..++|.||||+||||+++.+++.+. ..+..+++..+
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~------~~~~~Is~D~~ 69 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQ------GNVIVIDNDTF 69 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTT------TCCEEECTHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC------CCeEEEechHh
Confidence 345699999999999999999999874 23455665433
No 256
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.42 E-value=0.0015 Score=65.48 Aligned_cols=28 Identities=39% Similarity=0.730 Sum_probs=24.7
Q ss_pred CCCceEEEECCCCcHHHHHHHHHHHHhc
Q 002386 588 PLPGHILIHGPPGSGKTSLAKAVAKSLE 615 (929)
Q Consensus 588 ~~~~~vLL~GppGtGKTtLaralA~~L~ 615 (929)
+.+..|+|.|+||+||||+++.+++.++
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~ 30 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGLR 30 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3456699999999999999999999886
No 257
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.42 E-value=0.0015 Score=68.68 Aligned_cols=33 Identities=18% Similarity=0.248 Sum_probs=29.5
Q ss_pred CCceeEEecCCCCcHHHHHHHHHHHcCCceEEE
Q 002386 877 LRSNVLLYGPPGCGKTHIVGAAAAACSLRFISV 909 (929)
Q Consensus 877 ~~sGiLLyGpPGtGKT~LA~alA~e~glnfIsV 909 (929)
.+.-|+|.|||||||||+|+.+|+.+|..+|++
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~ 60 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLST 60 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 455689999999999999999999999888876
No 258
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.40 E-value=0.001 Score=73.54 Aligned_cols=44 Identities=23% Similarity=0.336 Sum_probs=36.1
Q ss_pred ceeEEecCCCCcHHHHHHHHHHHcCCceEE------------------EecccccccccChh
Q 002386 879 SNVLLYGPPGCGKTHIVGAAAAACSLRFIS------------------VKGPELLNKYIGAS 922 (929)
Q Consensus 879 sGiLLyGpPGtGKT~LA~alA~e~glnfIs------------------Vkg~ELl~kyIG~S 922 (929)
..++|.||||||||++++++|+.+++.|+. ++.-+.+.+..|.+
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~~l~~~f~~l~a~~~g~~~ir~~~~~a~d~D~~I~~~~g~~ 86 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQIINEKYHTFLSEHPNVIEVNDRLKPMVNLVDSLKTLQPNK 86 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHHHHHHHHHSTTCCCEECTTSCCCCSSTTSEECCHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhCCCeeeecccccchHHHHHHHHhhhhhhhHHHHHhCcc
Confidence 468999999999999999999999999865 55556666666665
No 259
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=96.40 E-value=0.0019 Score=77.28 Aligned_cols=49 Identities=31% Similarity=0.345 Sum_probs=41.3
Q ss_pred CccCCCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHcCC
Q 002386 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSL 904 (929)
Q Consensus 841 ~~w~dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~gl 904 (929)
..|+++.|.+.+++.+...+. .+..+||+||||||||++|+++|+.+..
T Consensus 38 ~~l~~i~G~~~~l~~l~~~i~---------------~g~~vll~Gp~GtGKTtlar~ia~~l~~ 86 (604)
T 3k1j_A 38 KLIDQVIGQEHAVEVIKTAAN---------------QKRHVLLIGEPGTGKSMLGQAMAELLPT 86 (604)
T ss_dssp SHHHHCCSCHHHHHHHHHHHH---------------TTCCEEEECCTTSSHHHHHHHHHHTSCC
T ss_pred cccceEECchhhHhhcccccc---------------CCCEEEEEeCCCCCHHHHHHHHhccCCc
Confidence 578899999999888877664 2257999999999999999999998853
No 260
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.40 E-value=0.007 Score=68.93 Aligned_cols=102 Identities=19% Similarity=0.127 Sum_probs=58.4
Q ss_pred hhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccccccC----
Q 002386 560 GTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLE---- 635 (929)
Q Consensus 560 ~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~~~---- 635 (929)
+..++.+.+.+..++.+..... ... -..+.-+++.|++|+||||++..+|..+.... ..+..++|..+...
T Consensus 69 ~~v~~~v~~eL~~~L~~~~~~~-~~~-~~~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G---~kVllv~~D~~r~~a~eq 143 (433)
T 3kl4_A 69 EWFISIVYDELSKLFGGDKEPN-VNP-TKLPFIIMLVGVQGSGKTTTAGKLAYFYKKRG---YKVGLVAADVYRPAAYDQ 143 (433)
T ss_dssp HHHHHHHHHHHHHHHCSSSCCC-CSC-CSSSEEEEECCCTTSCHHHHHHHHHHHHHHTT---CCEEEEEECCSCHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcccccc-ccc-cCCCeEEEEECCCCCCHHHHHHHHHHHHHHcC---CeEEEEecCccchhHHHH
Confidence 3445556666654454321111 111 12356689999999999999999999886543 33444554322110
Q ss_pred ----------------chhhHHHHHHHHHHHHHhcCCcEEEEccccc
Q 002386 636 ----------------KGPIIRQALSNFISEALDHAPSIVIFDNLDS 666 (929)
Q Consensus 636 ----------------~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~ 666 (929)
............+..+.+..+.++++|....
T Consensus 144 L~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a~~~~~DvvIIDTaGr 190 (433)
T 3kl4_A 144 LLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIFVKNKMDIIIVDTAGR 190 (433)
T ss_dssp HHHHHHTTTCCEECCTTCSCHHHHHHHHHHHTTTTTCSEEEEEECCC
T ss_pred HHHHHHhcCCceeeccccCCHHHHHHHHHHHHHhcCCCEEEEECCCC
Confidence 0011222334455666666789999998744
No 261
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.38 E-value=0.0022 Score=65.10 Aligned_cols=36 Identities=25% Similarity=0.364 Sum_probs=28.7
Q ss_pred CCceeEEecCCCCcHHHHHHHHHHHcCCceEEEecccc
Q 002386 877 LRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPEL 914 (929)
Q Consensus 877 ~~sGiLLyGpPGtGKT~LA~alA~e~glnfIsVkg~EL 914 (929)
.+.-+.|.||+||||||+++++|+.+|.. .+++-++
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~g~~--~i~~d~~ 63 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADETGLE--FAEADAF 63 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHCCE--EEEGGGG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCCe--EEccccc
Confidence 34557899999999999999999999754 4555554
No 262
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=96.37 E-value=0.0031 Score=69.53 Aligned_cols=28 Identities=21% Similarity=0.274 Sum_probs=24.8
Q ss_pred CCCceeEEecCCCCcHHHHHHHHHHHcC
Q 002386 876 RLRSNVLLYGPPGCGKTHIVGAAAAACS 903 (929)
Q Consensus 876 r~~sGiLLyGpPGtGKT~LA~alA~e~g 903 (929)
+.+..+|||||||||||++|+++|+...
T Consensus 22 ~~~~a~L~~G~~G~GKt~~a~~la~~l~ 49 (334)
T 1a5t_A 22 RGHHALLIQALPGMGDDALIYALSRYLL 49 (334)
T ss_dssp CCCSEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CcceeEEEECCCCchHHHHHHHHHHHHh
Confidence 4567899999999999999999999864
No 263
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.34 E-value=0.0019 Score=63.24 Aligned_cols=24 Identities=29% Similarity=0.495 Sum_probs=22.5
Q ss_pred eEEEECCCCcHHHHHHHHHHHHhc
Q 002386 592 HILIHGPPGSGKTSLAKAVAKSLE 615 (929)
Q Consensus 592 ~vLL~GppGtGKTtLaralA~~L~ 615 (929)
.|+|.|++||||||+++.+++.++
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999999987
No 264
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.34 E-value=0.0022 Score=64.17 Aligned_cols=27 Identities=44% Similarity=0.591 Sum_probs=23.8
Q ss_pred CCceEEEECCCCcHHHHHHHHHHHH-hc
Q 002386 589 LPGHILIHGPPGSGKTSLAKAVAKS-LE 615 (929)
Q Consensus 589 ~~~~vLL~GppGtGKTtLaralA~~-L~ 615 (929)
.+..++|+|++||||||+++.+++. ++
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~l~g 36 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAELDG 36 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHHSTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 3456999999999999999999998 55
No 265
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.31 E-value=0.0063 Score=64.52 Aligned_cols=25 Identities=40% Similarity=0.667 Sum_probs=22.6
Q ss_pred ceEEEECCCCcHHHHHHHHHHHHhc
Q 002386 591 GHILIHGPPGSGKTSLAKAVAKSLE 615 (929)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~L~ 615 (929)
.-|+|+|+|||||||+++.+++.+.
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4599999999999999999999854
No 266
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.30 E-value=0.0024 Score=63.41 Aligned_cols=26 Identities=42% Similarity=0.650 Sum_probs=23.8
Q ss_pred CceEEEECCCCcHHHHHHHHHHHHhc
Q 002386 590 PGHILIHGPPGSGKTSLAKAVAKSLE 615 (929)
Q Consensus 590 ~~~vLL~GppGtGKTtLaralA~~L~ 615 (929)
+..|+|+|+||+||||+++.+++.++
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~ 36 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSG 36 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhC
Confidence 45699999999999999999999986
No 267
>2jv2_A Putative uncharacterized protein PH1500; AAA ATPase NC-domain-like, unknown function; NMR {Pyrococcus horikoshii}
Probab=96.23 E-value=0.0081 Score=51.91 Aligned_cols=74 Identities=14% Similarity=0.236 Sum_probs=59.6
Q ss_pred CccceeEEEecCCcchhHHHHhcHHHHHHHHhcccceecCCCeEeEEecCceEEEEEEeccCCCCCeEEecCCCeEEEcc
Q 002386 91 VLKATLVTIEPLTEDDWEVLELNSEHAEAAILNQVRIVHEAMRFPLWLHGRTIITFHVVSTFPKKPVVQLVPGTEVAVAP 170 (929)
Q Consensus 91 ~~~~~~v~veP~t~dDWEi~el~a~~le~~lL~Q~r~v~~~~~~~~~~~~~~~~~~~v~~~~p~~~~~~l~~~tev~vaP 170 (929)
-..|+.|.+.|... -++-.--.+||-..|+. |.|..|+.+++-+-+ ..+.|+|.++.|+ +++++++|+|.+.+
T Consensus 9 ~~~A~kVvLAP~~~--i~~~~~~~~~lk~~L~g--rPV~~GD~I~i~~~G-~~i~F~Vv~t~P~--~V~Vt~~T~I~i~~ 81 (83)
T 2jv2_A 9 GVIMSELKLKPLPK--VELPPDFVDVIRIKLQG--KTVRTGDVIGISILG-KEVKFKVVQAYPS--PLRVEDRTKITLVT 81 (83)
T ss_dssp CCCCCEEEEEESSS--CCCCHHHHHHHHHHHTT--SEECTTCEEEEEETT-EEEEEEEEEEESS--SEECCTTSEEEECC
T ss_pred ceEEEEEEEcCCCc--eecCccHHHHHHHHHCC--CCccCCCEEEEeeCC-CEEEEEEEEecCc--cEEECCCcEEEEEe
Confidence 45788999999842 11111126899999999 889999999988755 8899999999997 89999999999976
Q ss_pred c
Q 002386 171 K 171 (929)
Q Consensus 171 k 171 (929)
+
T Consensus 82 e 82 (83)
T 2jv2_A 82 H 82 (83)
T ss_dssp C
T ss_pred c
Confidence 5
No 268
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.23 E-value=0.0017 Score=64.93 Aligned_cols=28 Identities=36% Similarity=0.470 Sum_probs=24.0
Q ss_pred CCCCceEEEECCCCcHHHHHHHHHHHHh
Q 002386 587 LPLPGHILIHGPPGSGKTSLAKAVAKSL 614 (929)
Q Consensus 587 ~~~~~~vLL~GppGtGKTtLaralA~~L 614 (929)
+..+..+.|.||+|+||||+++.++..+
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~~ 33 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANLP 33 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhcc
Confidence 4455679999999999999999999864
No 269
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.19 E-value=0.003 Score=62.08 Aligned_cols=25 Identities=32% Similarity=0.745 Sum_probs=23.1
Q ss_pred ceEEEECCCCcHHHHHHHHHHHHhc
Q 002386 591 GHILIHGPPGSGKTSLAKAVAKSLE 615 (929)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~L~ 615 (929)
..+.|+|++||||||+++.+|..++
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4599999999999999999999886
No 270
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.19 E-value=0.0055 Score=60.60 Aligned_cols=22 Identities=36% Similarity=0.696 Sum_probs=19.1
Q ss_pred CCCCceEEEECCCCcHHHHHHH
Q 002386 587 LPLPGHILIHGPPGSGKTSLAK 608 (929)
Q Consensus 587 ~~~~~~vLL~GppGtGKTtLar 608 (929)
++.+.-+.|.||+||||||+++
T Consensus 6 i~~gei~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 6 IPELSLVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp EESSEEEEEECCTTSCHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHH
Confidence 4455678999999999999999
No 271
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.15 E-value=0.016 Score=62.76 Aligned_cols=64 Identities=19% Similarity=0.275 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccc
Q 002386 562 TASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSR 631 (929)
Q Consensus 562 ~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~ 631 (929)
..+.+.+.+..++..... . .+ ...+..++|.|++|+||||++..+|..+....+ ..+..+++..
T Consensus 81 ~~~~~~~~l~~~l~~~~~-~--~~-~~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G--~~V~lv~~D~ 144 (296)
T 2px0_A 81 VVGKLQEILCDMLPSADK-W--QE-PIHSKYIVLFGSTGAGKTTTLAKLAAISMLEKH--KKIAFITTDT 144 (296)
T ss_dssp HHHHHHHHHHTTSCCGGG-S--CC-CCCSSEEEEEESTTSSHHHHHHHHHHHHHHTTC--CCEEEEECCC
T ss_pred HHHHHHHHHHHHhCCccc-c--cc-cCCCcEEEEECCCCCCHHHHHHHHHHHHHHhcC--CEEEEEecCc
Confidence 444455555545443321 0 01 123567999999999999999999998864222 2345555543
No 272
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=96.13 E-value=0.024 Score=59.22 Aligned_cols=29 Identities=24% Similarity=0.395 Sum_probs=25.0
Q ss_pred CCCCceEEEECCCCcHHHHHHHHHHHHhc
Q 002386 587 LPLPGHILIHGPPGSGKTSLAKAVAKSLE 615 (929)
Q Consensus 587 ~~~~~~vLL~GppGtGKTtLaralA~~L~ 615 (929)
++++..+.|.||+|+|||||+++++..+.
T Consensus 28 i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 56 (235)
T 3tif_A 28 IKEGEFVSIMGPSGSGKSTMLNIIGCLDK 56 (235)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 55567799999999999999999998664
No 273
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.13 E-value=0.0026 Score=62.91 Aligned_cols=24 Identities=50% Similarity=0.749 Sum_probs=22.6
Q ss_pred eEEEECCCCcHHHHHHHHHHHHhc
Q 002386 592 HILIHGPPGSGKTSLAKAVAKSLE 615 (929)
Q Consensus 592 ~vLL~GppGtGKTtLaralA~~L~ 615 (929)
.++|.|+|||||||+++.+|+.++
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 489999999999999999999987
No 274
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.12 E-value=0.023 Score=63.53 Aligned_cols=29 Identities=24% Similarity=0.445 Sum_probs=24.9
Q ss_pred CCCCceEEEECCCCcHHHHHHHHHHHHhc
Q 002386 587 LPLPGHILIHGPPGSGKTSLAKAVAKSLE 615 (929)
Q Consensus 587 ~~~~~~vLL~GppGtGKTtLaralA~~L~ 615 (929)
+..+.-+.|.||+|||||||+|+||..+.
T Consensus 26 i~~Ge~~~llGpsGsGKSTLLr~iaGl~~ 54 (381)
T 3rlf_A 26 IHEGEFVVFVGPSGCGKSTLLRMIAGLET 54 (381)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred ECCCCEEEEEcCCCchHHHHHHHHHcCCC
Confidence 45556788999999999999999998764
No 275
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.11 E-value=0.032 Score=64.97 Aligned_cols=42 Identities=7% Similarity=-0.002 Sum_probs=32.0
Q ss_pred CCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEec
Q 002386 586 HLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (929)
Q Consensus 586 ~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~ 629 (929)
|++++.-++|.|+||+|||+++..+|..+....+ ..+.+++.
T Consensus 238 Gl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g--~~vl~~s~ 279 (503)
T 1q57_A 238 GARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMG--KKVGLAML 279 (503)
T ss_dssp CCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSC--CCEEEEES
T ss_pred ccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcC--CcEEEEec
Confidence 5677777999999999999999999988764322 34555554
No 276
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.10 E-value=0.0042 Score=64.15 Aligned_cols=39 Identities=23% Similarity=0.399 Sum_probs=30.4
Q ss_pred CCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccccc
Q 002386 587 LPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLS 633 (929)
Q Consensus 587 ~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~ 633 (929)
...++-|+|.||||+||+|.|+.||+.++ +.++++.++.
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~g--------~~hIstGdll 64 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQKFH--------FNHLSSGDLL 64 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHHHC--------CEEECHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHC--------CceEcHHHHH
Confidence 44556788999999999999999999986 4556654443
No 277
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.09 E-value=0.0036 Score=65.43 Aligned_cols=32 Identities=28% Similarity=0.457 Sum_probs=28.6
Q ss_pred CceeEEecCCCCcHHHHHHHHHHHcCCceEEE
Q 002386 878 RSNVLLYGPPGCGKTHIVGAAAAACSLRFISV 909 (929)
Q Consensus 878 ~sGiLLyGpPGtGKT~LA~alA~e~glnfIsV 909 (929)
+.-+.+.||||||||++|+++|+.+|+.++..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~ 40 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYLDT 40 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccC
Confidence 34588999999999999999999999998874
No 278
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.08 E-value=0.0027 Score=62.21 Aligned_cols=25 Identities=40% Similarity=0.631 Sum_probs=23.5
Q ss_pred ceEEEECCCCcHHHHHHHHHHHHhc
Q 002386 591 GHILIHGPPGSGKTSLAKAVAKSLE 615 (929)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~L~ 615 (929)
..++|+|++||||||+++.+|+.++
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4699999999999999999999987
No 279
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.07 E-value=0.0035 Score=66.28 Aligned_cols=32 Identities=25% Similarity=0.335 Sum_probs=28.9
Q ss_pred CceeEEecCCCCcHHHHHHHHHHHcCCceEEE
Q 002386 878 RSNVLLYGPPGCGKTHIVGAAAAACSLRFISV 909 (929)
Q Consensus 878 ~sGiLLyGpPGtGKT~LA~alA~e~glnfIsV 909 (929)
...+.|.|++||||||+++++|+.+|+.|+..
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~ 79 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFFDC 79 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCcEEeC
Confidence 45689999999999999999999999988874
No 280
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.05 E-value=0.035 Score=63.67 Aligned_cols=41 Identities=22% Similarity=0.280 Sum_probs=31.7
Q ss_pred CCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEec
Q 002386 586 HLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (929)
Q Consensus 586 ~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~ 629 (929)
|++++.-++|.|+||+|||+++..+|....... .++.+++.
T Consensus 193 Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g---~~vl~fSl 233 (444)
T 3bgw_A 193 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDND---DVVNLHSL 233 (444)
T ss_dssp SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTT---CEEEEECS
T ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcC---CEEEEEEC
Confidence 566667799999999999999999998875442 34555654
No 281
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.04 E-value=0.0039 Score=65.38 Aligned_cols=31 Identities=29% Similarity=0.540 Sum_probs=27.7
Q ss_pred CceeEEecCCCCcHHHHHHHHHHHcCCceEE
Q 002386 878 RSNVLLYGPPGCGKTHIVGAAAAACSLRFIS 908 (929)
Q Consensus 878 ~sGiLLyGpPGtGKT~LA~alA~e~glnfIs 908 (929)
+.-+.|.|||||||||+++++|+.+|+..++
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~ 57 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQHLS 57 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCCCEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 4568899999999999999999999987765
No 282
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.02 E-value=0.0029 Score=62.94 Aligned_cols=24 Identities=38% Similarity=0.736 Sum_probs=22.7
Q ss_pred eEEEECCCCcHHHHHHHHHHHHhc
Q 002386 592 HILIHGPPGSGKTSLAKAVAKSLE 615 (929)
Q Consensus 592 ~vLL~GppGtGKTtLaralA~~L~ 615 (929)
.|+|+|+|||||||+++.+++.++
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHcC
Confidence 499999999999999999999987
No 283
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.01 E-value=0.015 Score=57.88 Aligned_cols=29 Identities=34% Similarity=0.497 Sum_probs=25.1
Q ss_pred CCceEEEECCCCcHHHHHHHHHHHHhccC
Q 002386 589 LPGHILIHGPPGSGKTSLAKAVAKSLEHH 617 (929)
Q Consensus 589 ~~~~vLL~GppGtGKTtLaralA~~L~~~ 617 (929)
.+..++|.|++|+||||+++.++..+...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~ 40 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKE 40 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 44569999999999999999999998643
No 284
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.01 E-value=0.0046 Score=62.69 Aligned_cols=27 Identities=37% Similarity=0.593 Sum_probs=24.0
Q ss_pred CCceEEEECCCCcHHHHHHHHHHHHhc
Q 002386 589 LPGHILIHGPPGSGKTSLAKAVAKSLE 615 (929)
Q Consensus 589 ~~~~vLL~GppGtGKTtLaralA~~L~ 615 (929)
.+..+.|.|++|+||||+++.+++.++
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~g 54 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADETG 54 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhC
Confidence 345699999999999999999999875
No 285
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.01 E-value=0.02 Score=63.63 Aligned_cols=29 Identities=24% Similarity=0.345 Sum_probs=24.8
Q ss_pred CCCCceEEEECCCCcHHHHHHHHHHHHhc
Q 002386 587 LPLPGHILIHGPPGSGKTSLAKAVAKSLE 615 (929)
Q Consensus 587 ~~~~~~vLL~GppGtGKTtLaralA~~L~ 615 (929)
++.+.-+-|.||+|+|||||+|+++..+.
T Consensus 51 i~~Gei~~IiGpnGaGKSTLlr~i~GL~~ 79 (366)
T 3tui_C 51 VPAGQIYGVIGASGAGKSTLIRCVNLLER 79 (366)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EcCCCEEEEEcCCCchHHHHHHHHhcCCC
Confidence 55566789999999999999999998654
No 286
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.00 E-value=0.0046 Score=60.97 Aligned_cols=26 Identities=35% Similarity=0.508 Sum_probs=23.2
Q ss_pred CceEEEECCCCcHHHHHHHHHHHHhc
Q 002386 590 PGHILIHGPPGSGKTSLAKAVAKSLE 615 (929)
Q Consensus 590 ~~~vLL~GppGtGKTtLaralA~~L~ 615 (929)
+..++|+|++|+||||+++.+++.++
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~g 33 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQLH 33 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhhC
Confidence 34689999999999999999999875
No 287
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.97 E-value=0.0098 Score=60.21 Aligned_cols=28 Identities=36% Similarity=0.399 Sum_probs=24.7
Q ss_pred CCCceEEEECCCCcHHHHHHHHHHHHhc
Q 002386 588 PLPGHILIHGPPGSGKTSLAKAVAKSLE 615 (929)
Q Consensus 588 ~~~~~vLL~GppGtGKTtLaralA~~L~ 615 (929)
..+..+.|.|++||||||++++++..+.
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3446689999999999999999999986
No 288
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=95.97 E-value=0.028 Score=62.43 Aligned_cols=29 Identities=31% Similarity=0.415 Sum_probs=24.8
Q ss_pred CCCCceEEEECCCCcHHHHHHHHHHHHhc
Q 002386 587 LPLPGHILIHGPPGSGKTSLAKAVAKSLE 615 (929)
Q Consensus 587 ~~~~~~vLL~GppGtGKTtLaralA~~L~ 615 (929)
+..+.-+.|.||+|||||||+|++|..+.
T Consensus 27 i~~Ge~~~llGpsGsGKSTLLr~iaGl~~ 55 (359)
T 3fvq_A 27 LDPGEILFIIGASGCGKTTLLRCLAGFEQ 55 (359)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHHTSSC
T ss_pred EcCCCEEEEECCCCchHHHHHHHHhcCCC
Confidence 45556688999999999999999998764
No 289
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.95 E-value=0.0038 Score=63.18 Aligned_cols=25 Identities=40% Similarity=0.696 Sum_probs=23.2
Q ss_pred ceEEEECCCCcHHHHHHHHHHHHhc
Q 002386 591 GHILIHGPPGSGKTSLAKAVAKSLE 615 (929)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~L~ 615 (929)
..|+|+|+|||||||+++.+++.++
T Consensus 21 ~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4599999999999999999999986
No 290
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.95 E-value=0.0037 Score=66.14 Aligned_cols=24 Identities=42% Similarity=0.515 Sum_probs=22.4
Q ss_pred eEEEECCCCcHHHHHHHHHHHHhc
Q 002386 592 HILIHGPPGSGKTSLAKAVAKSLE 615 (929)
Q Consensus 592 ~vLL~GppGtGKTtLaralA~~L~ 615 (929)
-++|+||+||||||+|+.+|+.++
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHHhcCC
Confidence 378999999999999999999987
No 291
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.94 E-value=0.0038 Score=62.31 Aligned_cols=25 Identities=20% Similarity=0.428 Sum_probs=23.1
Q ss_pred ceEEEECCCCcHHHHHHHHHHHHhc
Q 002386 591 GHILIHGPPGSGKTSLAKAVAKSLE 615 (929)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~L~ 615 (929)
..|+|+|+|||||||+++.+++.++
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~~ 28 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKYG 28 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4599999999999999999999886
No 292
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.92 E-value=0.018 Score=62.95 Aligned_cols=25 Identities=44% Similarity=0.673 Sum_probs=23.3
Q ss_pred ceEEEECCCCcHHHHHHHHHHHHhc
Q 002386 591 GHILIHGPPGSGKTSLAKAVAKSLE 615 (929)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~L~ 615 (929)
..++|+||+|||||++++.+|+.++
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4699999999999999999999987
No 293
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.91 E-value=0.0023 Score=65.22 Aligned_cols=27 Identities=19% Similarity=0.154 Sum_probs=23.2
Q ss_pred CceeEEecCCCCcHHHHHHHHHHHcCC
Q 002386 878 RSNVLLYGPPGCGKTHIVGAAAAACSL 904 (929)
Q Consensus 878 ~sGiLLyGpPGtGKT~LA~alA~e~gl 904 (929)
+.-|.|.|+|||||||+|+.+|+.++.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~ 35 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCA 35 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 445889999999999999999997643
No 294
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.91 E-value=0.0025 Score=64.85 Aligned_cols=32 Identities=13% Similarity=0.053 Sum_probs=25.8
Q ss_pred CceeEEecCCCCcHHHHHHHHHHHcCCceEEE
Q 002386 878 RSNVLLYGPPGCGKTHIVGAAAAACSLRFISV 909 (929)
Q Consensus 878 ~sGiLLyGpPGtGKT~LA~alA~e~glnfIsV 909 (929)
+.-|.|.|+|||||||+|+.+|+.++..++.+
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~ 41 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEV 41 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcE
Confidence 34578999999999999999999876554433
No 295
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.91 E-value=0.0038 Score=61.23 Aligned_cols=24 Identities=29% Similarity=0.605 Sum_probs=22.7
Q ss_pred eEEEECCCCcHHHHHHHHHHHHhc
Q 002386 592 HILIHGPPGSGKTSLAKAVAKSLE 615 (929)
Q Consensus 592 ~vLL~GppGtGKTtLaralA~~L~ 615 (929)
.|+|+|++||||||+++.+++.++
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999999987
No 296
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.90 E-value=0.004 Score=62.34 Aligned_cols=25 Identities=28% Similarity=0.542 Sum_probs=23.3
Q ss_pred ceEEEECCCCcHHHHHHHHHHHHhc
Q 002386 591 GHILIHGPPGSGKTSLAKAVAKSLE 615 (929)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~L~ 615 (929)
..|+|.|+|||||||+++.+++.++
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4699999999999999999999986
No 297
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.88 E-value=0.0042 Score=61.17 Aligned_cols=22 Identities=41% Similarity=0.575 Sum_probs=20.5
Q ss_pred ceEEEECCCCcHHHHHHHHHHH
Q 002386 591 GHILIHGPPGSGKTSLAKAVAK 612 (929)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~ 612 (929)
.-|+|.|+|||||||+++.+++
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4589999999999999999998
No 298
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=95.87 E-value=0.006 Score=72.33 Aligned_cols=27 Identities=37% Similarity=0.586 Sum_probs=23.9
Q ss_pred ceEEEECCCCcHHHHHHHHHHHHhccC
Q 002386 591 GHILIHGPPGSGKTSLAKAVAKSLEHH 617 (929)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~L~~~ 617 (929)
+.++|+|+||||||+++++++..+...
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~ 231 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESL 231 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 569999999999999999999987644
No 299
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.85 E-value=0.0042 Score=61.82 Aligned_cols=26 Identities=23% Similarity=0.493 Sum_probs=23.5
Q ss_pred ceEEEECCCCcHHHHHHHHHHHHhcc
Q 002386 591 GHILIHGPPGSGKTSLAKAVAKSLEH 616 (929)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~L~~ 616 (929)
..|+|+|+|||||||+++.+++.++.
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 29 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRK 29 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 45999999999999999999998863
No 300
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.84 E-value=0.0039 Score=60.79 Aligned_cols=23 Identities=52% Similarity=0.730 Sum_probs=20.8
Q ss_pred eEEEECCCCcHHHHHHHHHHHHhc
Q 002386 592 HILIHGPPGSGKTSLAKAVAKSLE 615 (929)
Q Consensus 592 ~vLL~GppGtGKTtLaralA~~L~ 615 (929)
-|+|+|+|||||||+++.+ +.++
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g 25 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERG 25 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTT
T ss_pred EEEEECCCCCCHHHHHHHH-HHCC
Confidence 4899999999999999999 7766
No 301
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.84 E-value=0.0048 Score=61.33 Aligned_cols=25 Identities=36% Similarity=0.698 Sum_probs=23.0
Q ss_pred ceEEEECCCCcHHHHHHHHHHHHhc
Q 002386 591 GHILIHGPPGSGKTSLAKAVAKSLE 615 (929)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~L~ 615 (929)
..++|+|+|||||||+++.+++.++
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l~ 29 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQELG 29 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4589999999999999999999886
No 302
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=95.83 E-value=0.042 Score=61.09 Aligned_cols=29 Identities=28% Similarity=0.452 Sum_probs=24.7
Q ss_pred CCCCceEEEECCCCcHHHHHHHHHHHHhc
Q 002386 587 LPLPGHILIHGPPGSGKTSLAKAVAKSLE 615 (929)
Q Consensus 587 ~~~~~~vLL~GppGtGKTtLaralA~~L~ 615 (929)
++.+..+.|.||+|||||||+|++|..+.
T Consensus 26 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (362)
T 2it1_A 26 IKDGEFMALLGPSGSGKSTLLYTIAGIYK 54 (362)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred ECCCCEEEEECCCCchHHHHHHHHhcCCC
Confidence 45556688999999999999999998764
No 303
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=95.81 E-value=0.013 Score=65.92 Aligned_cols=62 Identities=13% Similarity=0.086 Sum_probs=43.7
Q ss_pred CCCCCchhhHHHHHHHH-hcCCCchhhhhhCCCCCCceeEE--ecCCCCcHHHHHHHHHHHc---------CCceEEEec
Q 002386 844 DDVGGLTDIQNAIKEMI-ELPSKFPNIFAQAPLRLRSNVLL--YGPPGCGKTHIVGAAAAAC---------SLRFISVKG 911 (929)
Q Consensus 844 ~dIgGL~~vk~~L~e~l-e~p~k~~~if~~~~lr~~sGiLL--yGpPGtGKT~LA~alA~e~---------glnfIsVkg 911 (929)
+++.|-++..+.|.+.+ ..... . +-..+..+++ +||||||||+||++++++. +..++.+++
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~------~-~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLS------G-AGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNA 94 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHT------S-SCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEG
T ss_pred CCCCChHHHHHHHHHHHhHHHhc------C-CCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEEC
Confidence 56778888777777766 31111 0 0022457889 9999999999999999876 566788886
Q ss_pred c
Q 002386 912 P 912 (929)
Q Consensus 912 ~ 912 (929)
.
T Consensus 95 ~ 95 (412)
T 1w5s_A 95 F 95 (412)
T ss_dssp G
T ss_pred C
Confidence 4
No 304
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.81 E-value=0.0067 Score=60.10 Aligned_cols=25 Identities=28% Similarity=0.484 Sum_probs=22.9
Q ss_pred CceEEEECCCCcHHHHHHHHHHHHh
Q 002386 590 PGHILIHGPPGSGKTSLAKAVAKSL 614 (929)
Q Consensus 590 ~~~vLL~GppGtGKTtLaralA~~L 614 (929)
+..+.|+|++||||||+++.++..+
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4568899999999999999999987
No 305
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.81 E-value=0.005 Score=63.30 Aligned_cols=25 Identities=28% Similarity=0.608 Sum_probs=23.3
Q ss_pred ceEEEECCCCcHHHHHHHHHHHHhc
Q 002386 591 GHILIHGPPGSGKTSLAKAVAKSLE 615 (929)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~L~ 615 (929)
..|+|.|+|||||||+++.+|+.++
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4599999999999999999999986
No 306
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.79 E-value=0.0045 Score=62.66 Aligned_cols=25 Identities=40% Similarity=0.705 Sum_probs=23.1
Q ss_pred ceEEEECCCCcHHHHHHHHHHHHhc
Q 002386 591 GHILIHGPPGSGKTSLAKAVAKSLE 615 (929)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~L~ 615 (929)
..|+|+|++|+||||+++.+++.++
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~lg 43 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEACG 43 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4599999999999999999999986
No 307
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=95.79 E-value=0.037 Score=59.22 Aligned_cols=29 Identities=24% Similarity=0.271 Sum_probs=24.7
Q ss_pred CCCCceEEEECCCCcHHHHHHHHHHHHhc
Q 002386 587 LPLPGHILIHGPPGSGKTSLAKAVAKSLE 615 (929)
Q Consensus 587 ~~~~~~vLL~GppGtGKTtLaralA~~L~ 615 (929)
++.+.-+.|.||+|+|||||+++++..+.
T Consensus 31 i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~ 59 (275)
T 3gfo_A 31 IKRGEVTAILGGNGVGKSTLFQNFNGILK 59 (275)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 45556789999999999999999998764
No 308
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.79 E-value=0.0055 Score=62.06 Aligned_cols=30 Identities=17% Similarity=0.256 Sum_probs=27.1
Q ss_pred eeEEecCCCCcHHHHHHHHHHHcCCceEEE
Q 002386 880 NVLLYGPPGCGKTHIVGAAAAACSLRFISV 909 (929)
Q Consensus 880 GiLLyGpPGtGKT~LA~alA~e~glnfIsV 909 (929)
-|.|.|++||||||+|+.+|+.+|.++|..
T Consensus 14 iIgltG~~GSGKSTva~~L~~~lg~~vid~ 43 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNKYGAHVVNV 43 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCEEEEC
Confidence 467899999999999999999999988874
No 309
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=95.78 E-value=0.042 Score=61.03 Aligned_cols=29 Identities=24% Similarity=0.344 Sum_probs=24.8
Q ss_pred CCCCceEEEECCCCcHHHHHHHHHHHHhc
Q 002386 587 LPLPGHILIHGPPGSGKTSLAKAVAKSLE 615 (929)
Q Consensus 587 ~~~~~~vLL~GppGtGKTtLaralA~~L~ 615 (929)
++.+..+.|.||+|||||||+|++|..+.
T Consensus 26 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (359)
T 2yyz_A 26 VKDGEFVALLGPSGCGKTTTLLMLAGIYK 54 (359)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred EcCCCEEEEEcCCCchHHHHHHHHHCCCC
Confidence 45556788999999999999999998764
No 310
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.75 E-value=0.0047 Score=62.03 Aligned_cols=25 Identities=32% Similarity=0.510 Sum_probs=23.2
Q ss_pred ceEEEECCCCcHHHHHHHHHHHHhc
Q 002386 591 GHILIHGPPGSGKTSLAKAVAKSLE 615 (929)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~L~ 615 (929)
..|+|+|+|||||||+++.+++.++
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4599999999999999999999986
No 311
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.74 E-value=0.0041 Score=63.74 Aligned_cols=33 Identities=33% Similarity=0.599 Sum_probs=27.2
Q ss_pred EEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccccc
Q 002386 593 ILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLS 633 (929)
Q Consensus 593 vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~ 633 (929)
++|.||||+||+|.|+.||+.++ +.+++..++.
T Consensus 3 Iil~GpPGsGKgTqa~~La~~~g--------~~~istGdll 35 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKEKG--------FVHISTGDIL 35 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHC--------CEEEEHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHC--------CeEEcHHHHH
Confidence 78999999999999999999976 4556665543
No 312
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=95.74 E-value=0.012 Score=60.07 Aligned_cols=40 Identities=18% Similarity=0.179 Sum_probs=32.8
Q ss_pred CCCCCceeEEecCCCCcHHHHHHHHHHHcCCceEEEeccc
Q 002386 874 PLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPE 913 (929)
Q Consensus 874 ~lr~~sGiLLyGpPGtGKT~LA~alA~e~glnfIsVkg~E 913 (929)
++..+.-++++||||+|||++|..+|...|.+.+-+...+
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 5666777899999999999999999986677777766544
No 313
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.72 E-value=0.0043 Score=61.45 Aligned_cols=25 Identities=40% Similarity=0.542 Sum_probs=19.2
Q ss_pred ceEEEECCCCcHHHHHHHHHHHHhc
Q 002386 591 GHILIHGPPGSGKTSLAKAVAKSLE 615 (929)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~L~ 615 (929)
..|+|+|+|||||||+++.+++.++
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHST
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4599999999999999999999987
No 314
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.72 E-value=0.0046 Score=63.97 Aligned_cols=26 Identities=31% Similarity=0.548 Sum_probs=23.6
Q ss_pred CceEEEECCCCcHHHHHHHHHHHHhc
Q 002386 590 PGHILIHGPPGSGKTSLAKAVAKSLE 615 (929)
Q Consensus 590 ~~~vLL~GppGtGKTtLaralA~~L~ 615 (929)
+..|+|.|+|||||||+++.+|+.++
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l~ 32 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHFE 32 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 35699999999999999999999886
No 315
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=95.70 E-value=0.027 Score=61.18 Aligned_cols=30 Identities=17% Similarity=0.408 Sum_probs=25.7
Q ss_pred CCCCCceEEEECCCCcHHHHHHHHHHHHhc
Q 002386 586 HLPLPGHILIHGPPGSGKTSLAKAVAKSLE 615 (929)
Q Consensus 586 ~~~~~~~vLL~GppGtGKTtLaralA~~L~ 615 (929)
.++++..+.|.||+|+|||||++.++..+.
T Consensus 76 ~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~ 105 (306)
T 3nh6_A 76 TVMPGQTLALVGPSGAGKSTILRLLFRFYD 105 (306)
T ss_dssp EECTTCEEEEESSSCHHHHHHHHHHTTSSC
T ss_pred EEcCCCEEEEECCCCchHHHHHHHHHcCCC
Confidence 356667799999999999999999998764
No 316
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=95.68 E-value=0.043 Score=60.87 Aligned_cols=29 Identities=28% Similarity=0.406 Sum_probs=24.6
Q ss_pred CCCCceEEEECCCCcHHHHHHHHHHHHhc
Q 002386 587 LPLPGHILIHGPPGSGKTSLAKAVAKSLE 615 (929)
Q Consensus 587 ~~~~~~vLL~GppGtGKTtLaralA~~L~ 615 (929)
++.+..+.|.||+|||||||+|++|..+.
T Consensus 38 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 66 (355)
T 1z47_A 38 IREGEMVGLLGPSGSGKTTILRLIAGLER 66 (355)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred ECCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 44556688999999999999999998764
No 317
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.67 E-value=0.0058 Score=64.08 Aligned_cols=26 Identities=35% Similarity=0.643 Sum_probs=23.8
Q ss_pred CceEEEECCCCcHHHHHHHHHHHHhc
Q 002386 590 PGHILIHGPPGSGKTSLAKAVAKSLE 615 (929)
Q Consensus 590 ~~~vLL~GppGtGKTtLaralA~~L~ 615 (929)
+..+.|.||+|+||||+++.+++.++
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg 52 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFG 52 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35699999999999999999999886
No 318
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.66 E-value=0.0044 Score=61.74 Aligned_cols=25 Identities=28% Similarity=0.521 Sum_probs=22.9
Q ss_pred eEEEECCCCcHHHHHHHHHHHHhcc
Q 002386 592 HILIHGPPGSGKTSLAKAVAKSLEH 616 (929)
Q Consensus 592 ~vLL~GppGtGKTtLaralA~~L~~ 616 (929)
.|+|.|+|||||||+++.+++.++.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~ 27 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4899999999999999999999863
No 319
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.66 E-value=0.005 Score=60.10 Aligned_cols=24 Identities=29% Similarity=0.452 Sum_probs=22.5
Q ss_pred eEEEECCCCcHHHHHHHHHHHHhc
Q 002386 592 HILIHGPPGSGKTSLAKAVAKSLE 615 (929)
Q Consensus 592 ~vLL~GppGtGKTtLaralA~~L~ 615 (929)
.|+|+|++||||||+++.+++.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 389999999999999999999987
No 320
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=95.66 E-value=0.0058 Score=67.35 Aligned_cols=72 Identities=17% Similarity=0.258 Sum_probs=45.0
Q ss_pred CceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEecc-cccc----Cc---hhhHHHHHHHHHHHHHhcCCcEEEE
Q 002386 590 PGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCS-RLSL----EK---GPIIRQALSNFISEALDHAPSIVIF 661 (929)
Q Consensus 590 ~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s-~L~~----~~---~~~~~~~l~~~f~~a~~~~PsVL~L 661 (929)
+..++|.||+|+||||++++++..+.... ..+.++.. .+.. .. ........+..+..|....|.+|++
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~~~~~~----g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~p~ilil 246 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEFIPKEE----RIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIIL 246 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGGSCTTS----CEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcCCC----cEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhCCCEEEE
Confidence 45799999999999999999998875332 22333221 1110 00 0000122345566777789999999
Q ss_pred cccc
Q 002386 662 DNLD 665 (929)
Q Consensus 662 DEiD 665 (929)
||.-
T Consensus 247 dE~~ 250 (330)
T 2pt7_A 247 GELR 250 (330)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 9973
No 321
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=95.65 E-value=0.047 Score=60.95 Aligned_cols=29 Identities=28% Similarity=0.448 Sum_probs=24.7
Q ss_pred CCCCceEEEECCCCcHHHHHHHHHHHHhc
Q 002386 587 LPLPGHILIHGPPGSGKTSLAKAVAKSLE 615 (929)
Q Consensus 587 ~~~~~~vLL~GppGtGKTtLaralA~~L~ 615 (929)
++.+..+.|.||+|||||||+|++|..+.
T Consensus 34 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 62 (372)
T 1v43_A 34 IKDGEFLVLLGPSGCGKTTTLRMIAGLEE 62 (372)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred ECCCCEEEEECCCCChHHHHHHHHHcCCC
Confidence 45556788999999999999999998764
No 322
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.65 E-value=0.0049 Score=63.04 Aligned_cols=23 Identities=35% Similarity=0.668 Sum_probs=21.9
Q ss_pred EEEECCCCcHHHHHHHHHHHHhc
Q 002386 593 ILIHGPPGSGKTSLAKAVAKSLE 615 (929)
Q Consensus 593 vLL~GppGtGKTtLaralA~~L~ 615 (929)
|+|+|+|||||||+++.+++.++
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEKYE 25 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 88999999999999999999886
No 323
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.64 E-value=0.0047 Score=63.22 Aligned_cols=24 Identities=21% Similarity=0.560 Sum_probs=22.2
Q ss_pred eEEEECCCCcHHHHHHHHHHHHhc
Q 002386 592 HILIHGPPGSGKTSLAKAVAKSLE 615 (929)
Q Consensus 592 ~vLL~GppGtGKTtLaralA~~L~ 615 (929)
.|+|+|+|||||||+++.+++.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYG 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 388999999999999999999876
No 324
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.64 E-value=0.0064 Score=60.51 Aligned_cols=25 Identities=24% Similarity=0.562 Sum_probs=23.2
Q ss_pred ceEEEECCCCcHHHHHHHHHHHHhc
Q 002386 591 GHILIHGPPGSGKTSLAKAVAKSLE 615 (929)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~L~ 615 (929)
..|+|+|+|||||||+++.+++.++
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4699999999999999999999886
No 325
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.63 E-value=0.0054 Score=67.36 Aligned_cols=34 Identities=26% Similarity=0.353 Sum_probs=30.2
Q ss_pred eeEEecCCCCcHHHHHHHHHHHcCCceEEEeccc
Q 002386 880 NVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPE 913 (929)
Q Consensus 880 GiLLyGpPGtGKT~LA~alA~e~glnfIsVkg~E 913 (929)
-|+|.||+|||||+||..+|+.++..||+.+.-.
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~q 75 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQ 75 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHTTSCEEEEECCSST
T ss_pred eEEEECCCCCCHHHHHHHHHHHCCCcEEcccccc
Confidence 5789999999999999999999999999876553
No 326
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.58 E-value=0.0067 Score=63.67 Aligned_cols=26 Identities=35% Similarity=0.516 Sum_probs=23.8
Q ss_pred CceEEEECCCCcHHHHHHHHHHHHhc
Q 002386 590 PGHILIHGPPGSGKTSLAKAVAKSLE 615 (929)
Q Consensus 590 ~~~vLL~GppGtGKTtLaralA~~L~ 615 (929)
+..|+|+|||||||||+++.+++.++
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~~~~g 54 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLKKSHC 54 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45699999999999999999999876
No 327
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.58 E-value=0.0071 Score=62.85 Aligned_cols=25 Identities=36% Similarity=0.614 Sum_probs=23.3
Q ss_pred ceEEEECCCCcHHHHHHHHHHHHhc
Q 002386 591 GHILIHGPPGSGKTSLAKAVAKSLE 615 (929)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~L~ 615 (929)
..|+|.|+|||||||+++.+|+.++
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4699999999999999999999986
No 328
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.57 E-value=0.0086 Score=63.18 Aligned_cols=30 Identities=27% Similarity=0.492 Sum_probs=26.7
Q ss_pred ceeEEecCCCCcHHHHHHHHHHHcCCceEE
Q 002386 879 SNVLLYGPPGCGKTHIVGAAAAACSLRFIS 908 (929)
Q Consensus 879 sGiLLyGpPGtGKT~LA~alA~e~glnfIs 908 (929)
.-+.|.||+||||||+++++|+.+|+.++.
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d 57 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAESLNWRLLD 57 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCCcCC
Confidence 457799999999999999999999988764
No 329
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.57 E-value=0.0073 Score=61.05 Aligned_cols=25 Identities=28% Similarity=0.555 Sum_probs=23.0
Q ss_pred ceEEEECCCCcHHHHHHHHHHHHhc
Q 002386 591 GHILIHGPPGSGKTSLAKAVAKSLE 615 (929)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~L~ 615 (929)
..|+|+|++||||||+++.+++.++
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~~g 40 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKDYS 40 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4589999999999999999999876
No 330
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.55 E-value=0.006 Score=62.81 Aligned_cols=26 Identities=27% Similarity=0.570 Sum_probs=23.7
Q ss_pred CceEEEECCCCcHHHHHHHHHHHHhc
Q 002386 590 PGHILIHGPPGSGKTSLAKAVAKSLE 615 (929)
Q Consensus 590 ~~~vLL~GppGtGKTtLaralA~~L~ 615 (929)
+..|+|.|+|||||||+++.+|+.++
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34699999999999999999999987
No 331
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.54 E-value=0.035 Score=56.07 Aligned_cols=28 Identities=32% Similarity=0.379 Sum_probs=23.7
Q ss_pred ceEEEECCCCcHHHHHHHHHHHHhccCc
Q 002386 591 GHILIHGPPGSGKTSLAKAVAKSLEHHK 618 (929)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~L~~~~ 618 (929)
+.+++|+++|.||||+|-.+|-+....+
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G 56 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHG 56 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCC
Confidence 5699999999999999999988775443
No 332
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=95.53 E-value=0.04 Score=58.63 Aligned_cols=29 Identities=28% Similarity=0.492 Sum_probs=24.7
Q ss_pred CCCCceEEEECCCCcHHHHHHHHHHHHhc
Q 002386 587 LPLPGHILIHGPPGSGKTSLAKAVAKSLE 615 (929)
Q Consensus 587 ~~~~~~vLL~GppGtGKTtLaralA~~L~ 615 (929)
+.++..+.|.||+|+|||||+++++..+.
T Consensus 34 i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~ 62 (266)
T 4g1u_C 34 IASGEMVAIIGPNGAGKSTLLRLLTGYLS 62 (266)
T ss_dssp EETTCEEEEECCTTSCHHHHHHHHTSSSC
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 45556789999999999999999998664
No 333
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.50 E-value=0.0072 Score=61.22 Aligned_cols=26 Identities=35% Similarity=0.353 Sum_probs=23.7
Q ss_pred ceEEEECCCCcHHHHHHHHHHHHhcc
Q 002386 591 GHILIHGPPGSGKTSLAKAVAKSLEH 616 (929)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~L~~ 616 (929)
.-|+|.|+|||||||+++.+++.++.
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 45899999999999999999999874
No 334
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.50 E-value=0.011 Score=58.79 Aligned_cols=37 Identities=32% Similarity=0.319 Sum_probs=28.4
Q ss_pred CceeEEecCCCCcHHHHHHHHHHHc---CCceEEEecccc
Q 002386 878 RSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPEL 914 (929)
Q Consensus 878 ~sGiLLyGpPGtGKT~LA~alA~e~---glnfIsVkg~EL 914 (929)
+.-++|.|+|||||||+|+.+|..+ |.+++.+++-.+
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~ 52 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWA 52 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHH
Confidence 3457799999999999999999876 455666665443
No 335
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=95.47 E-value=0.048 Score=60.94 Aligned_cols=29 Identities=28% Similarity=0.445 Sum_probs=24.6
Q ss_pred CCCCceEEEECCCCcHHHHHHHHHHHHhc
Q 002386 587 LPLPGHILIHGPPGSGKTSLAKAVAKSLE 615 (929)
Q Consensus 587 ~~~~~~vLL~GppGtGKTtLaralA~~L~ 615 (929)
++.+..+.|.||+|||||||+|++|..+.
T Consensus 26 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (372)
T 1g29_1 26 VKDGEFMILLGPSGCGKTTTLRMIAGLEE 54 (372)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred EcCCCEEEEECCCCcHHHHHHHHHHcCCC
Confidence 44556688999999999999999998764
No 336
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.47 E-value=0.0096 Score=61.98 Aligned_cols=30 Identities=17% Similarity=0.432 Sum_probs=27.3
Q ss_pred ceeEEecCCCCcHHHHHHHHHHHcCCceEE
Q 002386 879 SNVLLYGPPGCGKTHIVGAAAAACSLRFIS 908 (929)
Q Consensus 879 sGiLLyGpPGtGKT~LA~alA~e~glnfIs 908 (929)
.-|.|.|++|||||++++.+|+.+|+.|+.
T Consensus 17 ~~i~i~G~~gsGKst~~~~l~~~lg~~~~d 46 (236)
T 1q3t_A 17 IQIAIDGPASSGKSTVAKIIAKDFGFTYLD 46 (236)
T ss_dssp CEEEEECSSCSSHHHHHHHHHHHHCCEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCceec
Confidence 457899999999999999999999988877
No 337
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=95.47 E-value=0.054 Score=60.04 Aligned_cols=29 Identities=28% Similarity=0.368 Sum_probs=24.7
Q ss_pred CCCCceEEEECCCCcHHHHHHHHHHHHhc
Q 002386 587 LPLPGHILIHGPPGSGKTSLAKAVAKSLE 615 (929)
Q Consensus 587 ~~~~~~vLL~GppGtGKTtLaralA~~L~ 615 (929)
++.+..+.|.||+|||||||+|++|..+.
T Consensus 28 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 56 (353)
T 1oxx_K 28 IENGERFGILGPSGAGKTTFMRIIAGLDV 56 (353)
T ss_dssp ECTTCEEEEECSCHHHHHHHHHHHHTSSC
T ss_pred ECCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 45556788999999999999999998654
No 338
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=95.45 E-value=0.065 Score=59.30 Aligned_cols=29 Identities=28% Similarity=0.350 Sum_probs=24.8
Q ss_pred CCCCceEEEECCCCcHHHHHHHHHHHHhc
Q 002386 587 LPLPGHILIHGPPGSGKTSLAKAVAKSLE 615 (929)
Q Consensus 587 ~~~~~~vLL~GppGtGKTtLaralA~~L~ 615 (929)
++.+..+.|.||+|||||||+|++|..+.
T Consensus 23 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 51 (348)
T 3d31_A 23 VESGEYFVILGPTGAGKTLFLELIAGFHV 51 (348)
T ss_dssp ECTTCEEEEECCCTHHHHHHHHHHHTSSC
T ss_pred EcCCCEEEEECCCCccHHHHHHHHHcCCC
Confidence 45556788999999999999999998764
No 339
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.42 E-value=0.0095 Score=64.57 Aligned_cols=37 Identities=24% Similarity=0.401 Sum_probs=31.7
Q ss_pred ceeEEecCCCCcHHHHHHHHHHHcCCceEEEeccccc
Q 002386 879 SNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELL 915 (929)
Q Consensus 879 sGiLLyGpPGtGKT~LA~alA~e~glnfIsVkg~ELl 915 (929)
.-+++.||+|+|||+||..+|+..+..+|+++.-.+.
T Consensus 11 ~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~qvY 47 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRKILPVELISVDSALIY 47 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTTTTB
T ss_pred cEEEEECCCccCHHHHHHHHHHhCCCcEEeccccccc
Confidence 4578899999999999999999999999988765443
No 340
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.42 E-value=0.0063 Score=62.52 Aligned_cols=25 Identities=28% Similarity=0.569 Sum_probs=23.1
Q ss_pred ceEEEECCCCcHHHHHHHHHHHHhc
Q 002386 591 GHILIHGPPGSGKTSLAKAVAKSLE 615 (929)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~L~ 615 (929)
..|+|.|+|||||||+++.+|+.++
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~ 30 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYG 30 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3589999999999999999999986
No 341
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.41 E-value=0.022 Score=62.72 Aligned_cols=31 Identities=26% Similarity=0.263 Sum_probs=26.4
Q ss_pred CCCCCceEEEECCCCcHHHHHHHHHHHHhcc
Q 002386 586 HLPLPGHILIHGPPGSGKTSLAKAVAKSLEH 616 (929)
Q Consensus 586 ~~~~~~~vLL~GppGtGKTtLaralA~~L~~ 616 (929)
|+.++.-++|.|+||+|||+++..+|..+..
T Consensus 42 Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~ 72 (338)
T 4a1f_A 42 GFNKGSLVIIGARPSMGKTSLMMNMVLSALN 72 (338)
T ss_dssp SBCTTCEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 4666677999999999999999999988754
No 342
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.40 E-value=0.0068 Score=61.25 Aligned_cols=28 Identities=25% Similarity=0.350 Sum_probs=23.8
Q ss_pred CCCCceEEEECCCCcHHHHHHHHHHHHh
Q 002386 587 LPLPGHILIHGPPGSGKTSLAKAVAKSL 614 (929)
Q Consensus 587 ~~~~~~vLL~GppGtGKTtLaralA~~L 614 (929)
+..+..+.|.||+||||||+++.++..+
T Consensus 3 i~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 3 NEKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp -CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3445678999999999999999999876
No 343
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.36 E-value=0.019 Score=57.31 Aligned_cols=23 Identities=39% Similarity=0.556 Sum_probs=21.6
Q ss_pred EEEECCCCcHHHHHHHHHHHHhc
Q 002386 593 ILIHGPPGSGKTSLAKAVAKSLE 615 (929)
Q Consensus 593 vLL~GppGtGKTtLaralA~~L~ 615 (929)
|.|+|++||||||+++.+++.+.
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~ 25 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLE 25 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 78999999999999999999983
No 344
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.36 E-value=0.01 Score=59.07 Aligned_cols=23 Identities=43% Similarity=0.549 Sum_probs=21.6
Q ss_pred EEEECCCCcHHHHHHHHHHHHhc
Q 002386 593 ILIHGPPGSGKTSLAKAVAKSLE 615 (929)
Q Consensus 593 vLL~GppGtGKTtLaralA~~L~ 615 (929)
|.|+|++||||||+++.+++.+.
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 78999999999999999999883
No 345
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=95.35 E-value=0.02 Score=62.68 Aligned_cols=54 Identities=17% Similarity=0.180 Sum_probs=40.6
Q ss_pred cCCCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHcCCceEEEeccc
Q 002386 843 WDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPE 913 (929)
Q Consensus 843 w~dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~glnfIsVkg~E 913 (929)
-..+.|-++..+.|.+ +.- ..++++||+|+|||+|++.++++.+.+++.+++..
T Consensus 12 ~~~~~gR~~el~~L~~-l~~----------------~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~ 65 (357)
T 2fna_A 12 RKDFFDREKEIEKLKG-LRA----------------PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRK 65 (357)
T ss_dssp GGGSCCCHHHHHHHHH-TCS----------------SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGG
T ss_pred HHHhcChHHHHHHHHH-hcC----------------CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchh
Confidence 3456676666666655 431 37899999999999999999999887777777654
No 346
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.29 E-value=0.0082 Score=60.38 Aligned_cols=24 Identities=33% Similarity=0.652 Sum_probs=22.5
Q ss_pred eEEEECCCCcHHHHHHHHHHHHhc
Q 002386 592 HILIHGPPGSGKTSLAKAVAKSLE 615 (929)
Q Consensus 592 ~vLL~GppGtGKTtLaralA~~L~ 615 (929)
.|.|.|++||||||+++.+++.++
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 388999999999999999999987
No 347
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.27 E-value=0.0097 Score=60.45 Aligned_cols=27 Identities=30% Similarity=0.486 Sum_probs=23.8
Q ss_pred CCceEEEECCCCcHHHHHHHHHHHHhc
Q 002386 589 LPGHILIHGPPGSGKTSLAKAVAKSLE 615 (929)
Q Consensus 589 ~~~~vLL~GppGtGKTtLaralA~~L~ 615 (929)
.+.-++|+||||+||||+++.+++.+.
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 345699999999999999999999874
No 348
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.26 E-value=0.01 Score=59.08 Aligned_cols=25 Identities=12% Similarity=0.361 Sum_probs=22.4
Q ss_pred ceEEEECCCCcHHHHHHHHHHHHhc
Q 002386 591 GHILIHGPPGSGKTSLAKAVAKSLE 615 (929)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~L~ 615 (929)
.-+.|.||+|+|||||++.++..+.
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4589999999999999999998763
No 349
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.25 E-value=0.018 Score=58.73 Aligned_cols=27 Identities=33% Similarity=0.589 Sum_probs=23.9
Q ss_pred CCceEEEECCCCcHHHHHHHHHHHHhc
Q 002386 589 LPGHILIHGPPGSGKTSLAKAVAKSLE 615 (929)
Q Consensus 589 ~~~~vLL~GppGtGKTtLaralA~~L~ 615 (929)
.+.-+.|.||+|+|||||++.++..+.
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 345688999999999999999999885
No 350
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.23 E-value=0.073 Score=58.41 Aligned_cols=57 Identities=23% Similarity=0.244 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHhcCCCch-hhh-hhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCc
Q 002386 562 TASDVINRIKVLLSPDSG-LWF-STYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHK 618 (929)
Q Consensus 562 ~~~~i~~~l~~ll~~~~~-~~~-~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~ 618 (929)
..+.+.+.+..++.+..+ .+. .....+++.-+.|.||+|+||||+++.+|..+....
T Consensus 99 ~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~ 157 (328)
T 3e70_C 99 IEEAVKEAVSEILETSRRIDLIEEIRKAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHG 157 (328)
T ss_dssp HHHHHHHHHHHHSCCSSCCCHHHHHHSSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCccccchhhhcccCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 444455555555544321 110 011234566799999999999999999999886443
No 351
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=95.23 E-value=0.07 Score=66.31 Aligned_cols=27 Identities=33% Similarity=0.363 Sum_probs=22.6
Q ss_pred CCCCCceEEEECCCCcHHHHHHHHHHH
Q 002386 586 HLPLPGHILIHGPPGSGKTSLAKAVAK 612 (929)
Q Consensus 586 ~~~~~~~vLL~GppGtGKTtLaralA~ 612 (929)
....+..++|+||.|+||||++|.++.
T Consensus 669 ~~~~g~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 669 SEDSERVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp CTTSCCEEEEESCCCHHHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCchHHHHHHHHH
Confidence 344556799999999999999999875
No 352
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.22 E-value=0.0086 Score=60.77 Aligned_cols=28 Identities=25% Similarity=0.386 Sum_probs=24.6
Q ss_pred CceEEEECCCCcHHHHHHHHHHHHhccC
Q 002386 590 PGHILIHGPPGSGKTSLAKAVAKSLEHH 617 (929)
Q Consensus 590 ~~~vLL~GppGtGKTtLaralA~~L~~~ 617 (929)
+..|+|+|++||||||+++.+++.++..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~ 37 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNN 37 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 3569999999999999999999998743
No 353
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.22 E-value=0.0073 Score=61.18 Aligned_cols=37 Identities=22% Similarity=0.293 Sum_probs=30.8
Q ss_pred CceeEEecCCCCcHHHHHHHHHHHcCCceEEEeccccc
Q 002386 878 RSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELL 915 (929)
Q Consensus 878 ~sGiLLyGpPGtGKT~LA~alA~e~glnfIsVkg~ELl 915 (929)
..+++|.||||+|||+||.++|+..+ .+|+.+...+.
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdDs~~v~ 70 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGH-RLIADDRVDVY 70 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTC-EEEESSEEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCC-eEEecchhhee
Confidence 46899999999999999999998866 88876655544
No 354
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.22 E-value=0.0091 Score=60.43 Aligned_cols=34 Identities=21% Similarity=0.356 Sum_probs=27.0
Q ss_pred eEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccccc
Q 002386 592 HILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLS 633 (929)
Q Consensus 592 ~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~ 633 (929)
.|.|+|++||||||+++.+++.++ +..+++..+.
T Consensus 14 iIgltG~~GSGKSTva~~L~~~lg--------~~vid~D~~~ 47 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNKYG--------AHVVNVDRIG 47 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC--------CEEEEHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC--------CEEEECcHHH
Confidence 388999999999999999999876 3445655543
No 355
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.20 E-value=0.022 Score=62.50 Aligned_cols=25 Identities=24% Similarity=0.495 Sum_probs=23.1
Q ss_pred ceEEEECCCCcHHHHHHHHHHHHhc
Q 002386 591 GHILIHGPPGSGKTSLAKAVAKSLE 615 (929)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~L~ 615 (929)
.-++|.||+|||||+|+..||+.++
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCC
Confidence 4589999999999999999999986
No 356
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.16 E-value=0.014 Score=59.98 Aligned_cols=25 Identities=48% Similarity=0.775 Sum_probs=23.0
Q ss_pred ceEEEECCCCcHHHHHHHHHHHHhc
Q 002386 591 GHILIHGPPGSGKTSLAKAVAKSLE 615 (929)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~L~ 615 (929)
..+.|.|++||||||+++.+++.++
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g 30 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQ 30 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3589999999999999999999886
No 357
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=95.16 E-value=0.021 Score=59.67 Aligned_cols=24 Identities=42% Similarity=0.425 Sum_probs=21.5
Q ss_pred eEEEECCCCcHHHHHHHHHHHHhc
Q 002386 592 HILIHGPPGSGKTSLAKAVAKSLE 615 (929)
Q Consensus 592 ~vLL~GppGtGKTtLaralA~~L~ 615 (929)
.++++||+|+|||.++.+++..++
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~~ 133 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINELS 133 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHSC
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcC
Confidence 499999999999999999988763
No 358
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=95.15 E-value=0.037 Score=68.97 Aligned_cols=43 Identities=28% Similarity=0.180 Sum_probs=32.5
Q ss_pred ccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHH
Q 002386 557 SWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKS 613 (929)
Q Consensus 557 ~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~ 613 (929)
.|.+..++++.+.+... ...+-+.|+|+.|+||||||+.+++.
T Consensus 131 VGRe~eLeeL~elL~~~--------------d~~RVV~IvGmGGIGKTTLAk~Vy~d 173 (1221)
T 1vt4_I 131 VSRLQPYLKLRQALLEL--------------RPAKNVLIDGVLGSGKTWVALDVCLS 173 (1221)
T ss_dssp CCCHHHHHHHHHHHHHC--------------CSSCEEEECCSTTSSHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHhcc--------------CCCeEEEEEcCCCccHHHHHHHHHHh
Confidence 56788888887765321 11356899999999999999999864
No 359
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.15 E-value=0.0095 Score=60.52 Aligned_cols=32 Identities=19% Similarity=0.133 Sum_probs=26.1
Q ss_pred CceeEEecCCCCcHHHHHHHHHHHc-CCceEEE
Q 002386 878 RSNVLLYGPPGCGKTHIVGAAAAAC-SLRFISV 909 (929)
Q Consensus 878 ~sGiLLyGpPGtGKT~LA~alA~e~-glnfIsV 909 (929)
+.-+.+.|+|||||||+|+.+++.+ +..++..
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~ 53 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQ 53 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTSTTEEEEEG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCcEEEeC
Confidence 3446789999999999999999987 6666654
No 360
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.15 E-value=0.0084 Score=61.35 Aligned_cols=24 Identities=25% Similarity=0.469 Sum_probs=22.3
Q ss_pred eEEEECCCCcHHHHHHHHHHHHhc
Q 002386 592 HILIHGPPGSGKTSLAKAVAKSLE 615 (929)
Q Consensus 592 ~vLL~GppGtGKTtLaralA~~L~ 615 (929)
.|+|.|+|||||||+++.+++.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g 25 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYG 25 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 389999999999999999999886
No 361
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.14 E-value=0.01 Score=60.36 Aligned_cols=27 Identities=19% Similarity=0.362 Sum_probs=24.2
Q ss_pred CceEEEECCCCcHHHHHHHHHHHHhcc
Q 002386 590 PGHILIHGPPGSGKTSLAKAVAKSLEH 616 (929)
Q Consensus 590 ~~~vLL~GppGtGKTtLaralA~~L~~ 616 (929)
+..|+|+|++||||||+++.+++.++.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~ 35 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCA 35 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 456999999999999999999999864
No 362
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.12 E-value=0.019 Score=63.69 Aligned_cols=43 Identities=19% Similarity=0.138 Sum_probs=34.3
Q ss_pred CCCCCceeEEecCCCCcHHHHHHHHHHHc---CCceEEEecccccc
Q 002386 874 PLRLRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLN 916 (929)
Q Consensus 874 ~lr~~sGiLLyGpPGtGKT~LA~alA~e~---glnfIsVkg~ELl~ 916 (929)
++..++-++++||||||||+||..+|..+ |.+.+.|++.+.+.
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~ 102 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALD 102 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCC
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccc
Confidence 46666778999999999999999999764 66777777766543
No 363
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.12 E-value=0.01 Score=62.42 Aligned_cols=38 Identities=8% Similarity=0.076 Sum_probs=30.2
Q ss_pred ceeEEecCCCCcHHHHHHHHHHHcCCce--------EEEecccccc
Q 002386 879 SNVLLYGPPGCGKTHIVGAAAAACSLRF--------ISVKGPELLN 916 (929)
Q Consensus 879 sGiLLyGpPGtGKT~LA~alA~e~glnf--------IsVkg~ELl~ 916 (929)
.-|.+.|+|||||||+|+.+|..+|.++ +.+..-+++.
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~ 68 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYR 68 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCcccc
Confidence 3478999999999999999999999873 3455556554
No 364
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.09 E-value=0.012 Score=60.21 Aligned_cols=37 Identities=14% Similarity=0.227 Sum_probs=29.5
Q ss_pred CceeEEecCCCCcHHHHHHHHHHHc----CCceEEEecccc
Q 002386 878 RSNVLLYGPPGCGKTHIVGAAAAAC----SLRFISVKGPEL 914 (929)
Q Consensus 878 ~sGiLLyGpPGtGKT~LA~alA~e~----glnfIsVkg~EL 914 (929)
+.-++|.|+|||||||+|+.+++.+ |.+++.+++-.+
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~ 65 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 65 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHH
Confidence 3457889999999999999999865 566887776443
No 365
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.09 E-value=0.07 Score=61.49 Aligned_cols=31 Identities=32% Similarity=0.404 Sum_probs=26.3
Q ss_pred CCCCceEEEECCCCcHHHHHHHHHHHHhccC
Q 002386 587 LPLPGHILIHGPPGSGKTSLAKAVAKSLEHH 617 (929)
Q Consensus 587 ~~~~~~vLL~GppGtGKTtLaralA~~L~~~ 617 (929)
+..+.-++|.|++|+||||+++.||..+...
T Consensus 290 i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~ 320 (503)
T 2yhs_A 290 GKAPFVILMVGVNGVGKTTTIGKLARQFEQQ 320 (503)
T ss_dssp SCTTEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred ccCCeEEEEECCCcccHHHHHHHHHHHhhhc
Confidence 4556679999999999999999999988643
No 366
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.07 E-value=0.012 Score=59.29 Aligned_cols=26 Identities=42% Similarity=0.698 Sum_probs=22.8
Q ss_pred CCceEEEECCCCcHHHHHHHHHHHHh
Q 002386 589 LPGHILIHGPPGSGKTSLAKAVAKSL 614 (929)
Q Consensus 589 ~~~~vLL~GppGtGKTtLaralA~~L 614 (929)
.+.-+.|.||+|+||||+++.++..+
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 34568899999999999999999875
No 367
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.07 E-value=0.091 Score=59.89 Aligned_cols=74 Identities=18% Similarity=0.215 Sum_probs=48.6
Q ss_pred CCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccccccCchh--------------------hHHHHHHHHH
Q 002386 589 LPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGP--------------------IIRQALSNFI 648 (929)
Q Consensus 589 ~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~~~~~~--------------------~~~~~l~~~f 648 (929)
.++.++++|++|+||||++-.+|..+....+ ..+..++|......... .....+...+
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G--~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l 176 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHK--KKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAAL 176 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSC--CCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcC--CeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHH
Confidence 4567999999999999999999999875412 44566666543221111 1122234556
Q ss_pred HHHHhcCCcEEEEccc
Q 002386 649 SEALDHAPSIVIFDNL 664 (929)
Q Consensus 649 ~~a~~~~PsVL~LDEi 664 (929)
..+.+....++|+|-.
T Consensus 177 ~~~~~~~~D~VIIDTp 192 (433)
T 2xxa_A 177 KEAKLKFYDVLLVDTA 192 (433)
T ss_dssp HHHHHTTCSEEEEECC
T ss_pred HHHHhCCCCEEEEECC
Confidence 6666556789999875
No 368
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.06 E-value=0.014 Score=60.43 Aligned_cols=40 Identities=20% Similarity=0.274 Sum_probs=31.9
Q ss_pred CCCCCceeEEecCCCCcHHHHHHHHHHHc---------CCceEEEeccc
Q 002386 874 PLRLRSNVLLYGPPGCGKTHIVGAAAAAC---------SLRFISVKGPE 913 (929)
Q Consensus 874 ~lr~~sGiLLyGpPGtGKT~LA~alA~e~---------glnfIsVkg~E 913 (929)
++..+.-++|+||||||||+|++.+|..+ +...+.+.+.+
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 56667778999999999999999999852 45667777655
No 369
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.06 E-value=0.015 Score=58.60 Aligned_cols=25 Identities=28% Similarity=0.381 Sum_probs=22.8
Q ss_pred CceEEEECCCCcHHHHHHHHHHHHh
Q 002386 590 PGHILIHGPPGSGKTSLAKAVAKSL 614 (929)
Q Consensus 590 ~~~vLL~GppGtGKTtLaralA~~L 614 (929)
+..|.|.|++||||||+++.+++.+
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3569999999999999999999987
No 370
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.05 E-value=0.0093 Score=60.32 Aligned_cols=23 Identities=30% Similarity=0.496 Sum_probs=21.3
Q ss_pred eEEEECCCCcHHHHHHHHHHHHhc
Q 002386 592 HILIHGPPGSGKTSLAKAVAKSLE 615 (929)
Q Consensus 592 ~vLL~GppGtGKTtLaralA~~L~ 615 (929)
.+.|+|++||||||+++.+++ ++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g 25 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LG 25 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TT
T ss_pred EEEEECCCCcCHHHHHHHHHH-CC
Confidence 488999999999999999999 75
No 371
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.04 E-value=0.05 Score=61.72 Aligned_cols=71 Identities=24% Similarity=0.433 Sum_probs=42.2
Q ss_pred ceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEec-cccccC------chhhHHHHHHHHHHHHHhcCCcEEEEcc
Q 002386 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC-SRLSLE------KGPIIRQALSNFISEALDHAPSIVIFDN 663 (929)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~-s~L~~~------~~~~~~~~l~~~f~~a~~~~PsVL~LDE 663 (929)
+.++|.||+|+||||++++++..+....+ .+..+.- -++... ....+...+...+..+....|.++++.|
T Consensus 168 gii~I~GpnGSGKTTlL~allg~l~~~~g---~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lrq~pd~i~vgE 244 (418)
T 1p9r_A 168 GIILVTGPTGSGKSTTLYAGLQELNSSER---NILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGE 244 (418)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHCCTTS---CEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGGCCSEEEESC
T ss_pred CeEEEECCCCCCHHHHHHHHHhhcCCCCC---EEEEecccchhccCCcceEEEccccCcCHHHHHHHHhccCCCeEEEcC
Confidence 55899999999999999999998864422 2222211 111100 0011111234445555557899999988
Q ss_pred c
Q 002386 664 L 664 (929)
Q Consensus 664 i 664 (929)
+
T Consensus 245 i 245 (418)
T 1p9r_A 245 I 245 (418)
T ss_dssp C
T ss_pred c
Confidence 5
No 372
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.03 E-value=0.014 Score=60.20 Aligned_cols=23 Identities=43% Similarity=0.674 Sum_probs=21.9
Q ss_pred EEEECCCCcHHHHHHHHHHHHhc
Q 002386 593 ILIHGPPGSGKTSLAKAVAKSLE 615 (929)
Q Consensus 593 vLL~GppGtGKTtLaralA~~L~ 615 (929)
++|.|+|||||||+++.+++.++
T Consensus 3 I~l~G~~GsGKsT~a~~La~~lg 25 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQGNLVKDKYS 25 (223)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 89999999999999999999886
No 373
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.02 E-value=0.014 Score=59.24 Aligned_cols=27 Identities=19% Similarity=0.413 Sum_probs=23.5
Q ss_pred CCceeEEecCCCCcHHHHHHHHHHHcC
Q 002386 877 LRSNVLLYGPPGCGKTHIVGAAAAACS 903 (929)
Q Consensus 877 ~~sGiLLyGpPGtGKT~LA~alA~e~g 903 (929)
.+.-++|.||||+||||++++++..++
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 345588999999999999999999884
No 374
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.02 E-value=0.018 Score=58.69 Aligned_cols=35 Identities=37% Similarity=0.522 Sum_probs=26.9
Q ss_pred CCceeEEecCCCCcHHHHHHHHHHHcC-----CceEEEec
Q 002386 877 LRSNVLLYGPPGCGKTHIVGAAAAACS-----LRFISVKG 911 (929)
Q Consensus 877 ~~sGiLLyGpPGtGKT~LA~alA~e~g-----lnfIsVkg 911 (929)
.+.-+.+.||+|||||||+++++..+. .-.|.+++
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~ 60 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDG 60 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCC
Confidence 344566899999999999999998874 34555554
No 375
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.02 E-value=0.023 Score=62.83 Aligned_cols=25 Identities=28% Similarity=0.672 Sum_probs=23.2
Q ss_pred ceEEEECCCCcHHHHHHHHHHHHhc
Q 002386 591 GHILIHGPPGSGKTSLAKAVAKSLE 615 (929)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~L~ 615 (929)
.+++|.|++|+||||+++++|+.++
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhC
Confidence 3599999999999999999999987
No 376
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=95.00 E-value=0.032 Score=56.36 Aligned_cols=34 Identities=24% Similarity=0.225 Sum_probs=25.0
Q ss_pred ceEEEECCCCcHHH-HHHHHHHHHhccCccceeeEEEEe
Q 002386 591 GHILIHGPPGSGKT-SLAKAVAKSLEHHKDLVAHIVFVC 628 (929)
Q Consensus 591 ~~vLL~GppGtGKT-tLaralA~~L~~~~~~~~~~~~V~ 628 (929)
.-.++|||.|+||| .|++++.+..... ..+.++.
T Consensus 21 ~l~fiyG~MgsGKTt~Ll~~i~n~~~~~----~kvl~~k 55 (195)
T 1w4r_A 21 QIQVILGPMFSGKSTELMRRVRRFQIAQ----YKCLVIK 55 (195)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHHTT----CCEEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHcC----CeEEEEc
Confidence 44889999999999 8888888776433 3445554
No 377
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.00 E-value=0.014 Score=57.18 Aligned_cols=29 Identities=21% Similarity=0.402 Sum_probs=25.3
Q ss_pred CCCCceEEEECCCCcHHHHHHHHHHHHhc
Q 002386 587 LPLPGHILIHGPPGSGKTSLAKAVAKSLE 615 (929)
Q Consensus 587 ~~~~~~vLL~GppGtGKTtLaralA~~L~ 615 (929)
++++..+.|.||.|+|||||+|+++..+.
T Consensus 30 i~~Ge~v~L~G~nGaGKTTLlr~l~g~l~ 58 (158)
T 1htw_A 30 TEKAIMVYLNGDLGAGKTTLTRGMLQGIG 58 (158)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHhCC
Confidence 45556789999999999999999999883
No 378
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=94.99 E-value=0.01 Score=62.61 Aligned_cols=25 Identities=40% Similarity=0.578 Sum_probs=23.6
Q ss_pred ceEEEECCCCcHHHHHHHHHHHHhc
Q 002386 591 GHILIHGPPGSGKTSLAKAVAKSLE 615 (929)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~L~ 615 (929)
..+.|.|++||||||+++.+|+.++
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5699999999999999999999987
No 379
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=94.99 E-value=0.012 Score=63.09 Aligned_cols=30 Identities=20% Similarity=0.198 Sum_probs=26.3
Q ss_pred ceeEEecCCCCcHHHHHHHHHHHcCCceEEE
Q 002386 879 SNVLLYGPPGCGKTHIVGAAAAACSLRFISV 909 (929)
Q Consensus 879 sGiLLyGpPGtGKT~LA~alA~e~glnfIsV 909 (929)
.-|.|.|+|||||||+|+.+| ++|..+|..
T Consensus 76 ~iI~I~G~~GSGKSTva~~La-~lg~~~id~ 105 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLK-NLGAYIIDS 105 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHH-HHTCEEEEH
T ss_pred EEEEEECCCCCCHHHHHHHHH-HCCCcEEeh
Confidence 357899999999999999999 689888775
No 380
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=94.91 E-value=0.012 Score=59.99 Aligned_cols=28 Identities=29% Similarity=0.319 Sum_probs=24.5
Q ss_pred CCCceEEEECCCCcHHHHHHHHHHHHhc
Q 002386 588 PLPGHILIHGPPGSGKTSLAKAVAKSLE 615 (929)
Q Consensus 588 ~~~~~vLL~GppGtGKTtLaralA~~L~ 615 (929)
..+..++|.|++|+||||+++.+++.+.
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3446689999999999999999999885
No 381
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.90 E-value=0.012 Score=60.05 Aligned_cols=27 Identities=37% Similarity=0.490 Sum_probs=23.3
Q ss_pred CCceEEEECCCCcHHHHHHHHHHHHhc
Q 002386 589 LPGHILIHGPPGSGKTSLAKAVAKSLE 615 (929)
Q Consensus 589 ~~~~vLL~GppGtGKTtLaralA~~L~ 615 (929)
.+.-+.|.||+|+||||+++.++..+.
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 345688999999999999999998764
No 382
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=94.85 E-value=0.012 Score=60.23 Aligned_cols=37 Identities=27% Similarity=0.162 Sum_probs=28.1
Q ss_pred CCCCCceeEEecCCCCcHHHHHHHHHHHc---CCceEEEe
Q 002386 874 PLRLRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVK 910 (929)
Q Consensus 874 ~lr~~sGiLLyGpPGtGKT~LA~alA~e~---glnfIsVk 910 (929)
++..+.-++++||||||||+|++.+|... +.+.+-+.
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~ 58 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVT 58 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 45566778899999999999999999654 45544443
No 383
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=94.82 E-value=0.014 Score=60.13 Aligned_cols=28 Identities=29% Similarity=0.459 Sum_probs=23.5
Q ss_pred CCCCceEEEECCCCcHHHHHHHHHHHHh
Q 002386 587 LPLPGHILIHGPPGSGKTSLAKAVAKSL 614 (929)
Q Consensus 587 ~~~~~~vLL~GppGtGKTtLaralA~~L 614 (929)
++++..+.|.||+|+|||||++.++..+
T Consensus 20 i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp --CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4555679999999999999999999976
No 384
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=94.80 E-value=0.024 Score=64.48 Aligned_cols=28 Identities=29% Similarity=0.482 Sum_probs=24.0
Q ss_pred CCCceEEEECCCCcHHHHHHHHHHHHhc
Q 002386 588 PLPGHILIHGPPGSGKTSLAKAVAKSLE 615 (929)
Q Consensus 588 ~~~~~vLL~GppGtGKTtLaralA~~L~ 615 (929)
+.+.-|+|+|+|||||||+++.+++.++
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~~ 283 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSAG 283 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGGT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3456699999999999999999998765
No 385
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=94.77 E-value=0.061 Score=62.97 Aligned_cols=80 Identities=20% Similarity=0.219 Sum_probs=50.0
Q ss_pred CCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEecccc----------cc----------------Cchh-
Q 002386 586 HLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRL----------SL----------------EKGP- 638 (929)
Q Consensus 586 ~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L----------~~----------------~~~~- 638 (929)
+++++..++|.|++|+|||||++.++..+..... .++++...+- .+ ....
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~---~vi~~~~ee~~~~l~~~~~~~g~~~~~~~~~g~~~~~~~~p~~ 353 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVENACANKE---RAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPES 353 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTC---CEEEEESSSCHHHHHHHHHTTSCCHHHHHHTTSEEECCCCGGG
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCC---CEEEEEEeCCHHHHHHHHHHcCCCHHHHHhCCCEEEEEecccc
Confidence 4666677999999999999999999987654322 2333332110 00 0000
Q ss_pred -hHHHHHHHHHHHHHhcCCcEEEEccccccc
Q 002386 639 -IIRQALSNFISEALDHAPSIVIFDNLDSII 668 (929)
Q Consensus 639 -~~~~~l~~~f~~a~~~~PsVL~LDEiD~L~ 668 (929)
...+..+.++..+....|.+|+||-+..+.
T Consensus 354 LS~g~~q~~~~a~~l~~~p~llilDp~~~Ld 384 (525)
T 1tf7_A 354 AGLEDHLQIIKSEINDFKPARIAIDSLSALA 384 (525)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEECHHHHT
T ss_pred CCHHHHHHHHHHHHHhhCCCEEEEcChHHHH
Confidence 123344455666667889999999665553
No 386
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=94.76 E-value=0.021 Score=59.53 Aligned_cols=25 Identities=32% Similarity=0.699 Sum_probs=23.3
Q ss_pred ceEEEECCCCcHHHHHHHHHHHHhc
Q 002386 591 GHILIHGPPGSGKTSLAKAVAKSLE 615 (929)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~L~ 615 (929)
..+.|.||+||||||+++.+|+.++
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4699999999999999999999987
No 387
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.76 E-value=0.014 Score=59.02 Aligned_cols=26 Identities=31% Similarity=0.682 Sum_probs=22.5
Q ss_pred CceEEEECCCCcHHHHHHHHHHHHhc
Q 002386 590 PGHILIHGPPGSGKTSLAKAVAKSLE 615 (929)
Q Consensus 590 ~~~vLL~GppGtGKTtLaralA~~L~ 615 (929)
+..+.|.||+|+|||||++.++..+.
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 45699999999999999999998763
No 388
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=94.74 E-value=0.1 Score=60.54 Aligned_cols=101 Identities=18% Similarity=0.201 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccccccC------
Q 002386 562 TASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLE------ 635 (929)
Q Consensus 562 ~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~~~------ 635 (929)
..+.+.+.+..++......+ .+.-..+..|+|+|++|+||||++..+|..+.... ..+..+++......
T Consensus 75 ~~~~v~~eL~~ll~~~~~~~--~~~~~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G---~kVllVd~D~~r~aa~~qL~ 149 (504)
T 2j37_W 75 IQHAVFKELVKLVDPGVKAW--TPTKGKQNVIMFVGLQGSGKTTTCSKLAYYYQRKG---WKTCLICADTFRAGAFDQLK 149 (504)
T ss_dssp HHHHHHHHHHHHHCCCCCCC--CCCSS--EEEEEECSTTSSHHHHHHHHHHHHHHTT---CCEEEEEECCSSSHHHHHHH
T ss_pred HHHHHHHHHHHHhccccchh--ccccCCCeEEEEECCCCCCHHHHHHHHHHHHHhCC---CeEEEEeccccchhHHHHHH
Confidence 44455555554554332111 00112355799999999999999999999886432 23444444221100
Q ss_pred --------------chhhHHHHHHHHHHHHHhcCCcEEEEcccccc
Q 002386 636 --------------KGPIIRQALSNFISEALDHAPSIVIFDNLDSI 667 (929)
Q Consensus 636 --------------~~~~~~~~l~~~f~~a~~~~PsVL~LDEiD~L 667 (929)
...+....+.+.+..+.+....++|+|-.-.+
T Consensus 150 ~~~~~~~i~v~~~~~~~dp~~i~~~al~~~~~~~~DvvIIDTpG~~ 195 (504)
T 2j37_W 150 QNATKARIPFYGSYTEMDPVIIASEGVEKFKNENFEIIIVDTSGRH 195 (504)
T ss_dssp HHHHHHTCCEEECCCCSCHHHHHHHHHHHHHHTTCCEEEEEECCCC
T ss_pred HHhhccCceEEccCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCCc
Confidence 00111122244555565566789999976443
No 389
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=94.73 E-value=0.018 Score=58.96 Aligned_cols=40 Identities=18% Similarity=0.241 Sum_probs=30.8
Q ss_pred CCCCCceeEEecCCCCcHHHHHHHHHHHcC---------CceEEEeccc
Q 002386 874 PLRLRSNVLLYGPPGCGKTHIVGAAAAACS---------LRFISVKGPE 913 (929)
Q Consensus 874 ~lr~~sGiLLyGpPGtGKT~LA~alA~e~g---------lnfIsVkg~E 913 (929)
++..+.-+.|+||+|||||+|++.+|...- ...+.+.+.+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~ 69 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 69 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCC
Confidence 566666788999999999999999998542 2366666654
No 390
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=94.73 E-value=0.017 Score=60.02 Aligned_cols=39 Identities=26% Similarity=0.186 Sum_probs=28.9
Q ss_pred CCCCCceeEEecCCCCcHHHHHHHHH--HH--cCCceEEEecc
Q 002386 874 PLRLRSNVLLYGPPGCGKTHIVGAAA--AA--CSLRFISVKGP 912 (929)
Q Consensus 874 ~lr~~sGiLLyGpPGtGKT~LA~alA--~e--~glnfIsVkg~ 912 (929)
++..+.-+.|.||+|||||||+++++ .. .+...+.+.+.
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~ 68 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLE 68 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEcc
Confidence 56667778899999999999999998 32 34455555443
No 391
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=94.72 E-value=0.012 Score=66.99 Aligned_cols=32 Identities=19% Similarity=0.331 Sum_probs=27.3
Q ss_pred CceeEEecCCCCcHHHHHHHHHHHcCCceEEE
Q 002386 878 RSNVLLYGPPGCGKTHIVGAAAAACSLRFISV 909 (929)
Q Consensus 878 ~sGiLLyGpPGtGKT~LA~alA~e~glnfIsV 909 (929)
+.-|+|.|+|||||||+|+.+++.+|..+|+.
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~~~~~~i~~ 289 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNR 289 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGGGTCEECCG
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhcCcEEEcc
Confidence 44578899999999999999999998776654
No 392
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=94.69 E-value=0.037 Score=60.34 Aligned_cols=53 Identities=19% Similarity=0.164 Sum_probs=39.5
Q ss_pred ccCCCCCchhhHHHHHHHHhcCCCchhhhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHcCCceEEEec
Q 002386 842 GWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKG 911 (929)
Q Consensus 842 ~w~dIgGL~~vk~~L~e~le~p~k~~~if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~glnfIsVkg 911 (929)
.-..+.|-+...+.|.+.+.- +..++++||+|||||+|++.++++.+ ++.+++
T Consensus 10 ~~~~~~gR~~el~~L~~~l~~---------------~~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~ 62 (350)
T 2qen_A 10 RREDIFDREEESRKLEESLEN---------------YPLTLLLGIRRVGKSSLLRAFLNERP--GILIDC 62 (350)
T ss_dssp SGGGSCSCHHHHHHHHHHHHH---------------CSEEEEECCTTSSHHHHHHHHHHHSS--EEEEEH
T ss_pred ChHhcCChHHHHHHHHHHHhc---------------CCeEEEECCCcCCHHHHHHHHHHHcC--cEEEEe
Confidence 344567777777777766541 14789999999999999999999986 555554
No 393
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=94.69 E-value=0.025 Score=57.39 Aligned_cols=32 Identities=25% Similarity=0.424 Sum_probs=24.6
Q ss_pred hCCCCCCceeEEecCCCCcHHHHHHHHHHHcC
Q 002386 872 QAPLRLRSNVLLYGPPGCGKTHIVGAAAAACS 903 (929)
Q Consensus 872 ~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~g 903 (929)
++|...+.-+.|.||+|+|||+|++++++.+.
T Consensus 13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp ---CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred cCCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 34444556678999999999999999998875
No 394
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=94.68 E-value=0.075 Score=58.10 Aligned_cols=31 Identities=19% Similarity=0.192 Sum_probs=26.4
Q ss_pred CCCCceEEEECCCCcHHHHHHHHHHHHhccC
Q 002386 587 LPLPGHILIHGPPGSGKTSLAKAVAKSLEHH 617 (929)
Q Consensus 587 ~~~~~~vLL~GppGtGKTtLaralA~~L~~~ 617 (929)
...+.-++|+|++|+||||++..+|..+...
T Consensus 102 ~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~ 132 (320)
T 1zu4_A 102 ENRLNIFMLVGVNGTGKTTSLAKMANYYAEL 132 (320)
T ss_dssp TTSCEEEEEESSTTSSHHHHHHHHHHHHHHT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 4456679999999999999999999988644
No 395
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.67 E-value=0.092 Score=56.76 Aligned_cols=72 Identities=19% Similarity=0.193 Sum_probs=46.0
Q ss_pred CceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccccccCc--------------------hhhHHHHHHHHHH
Q 002386 590 PGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEK--------------------GPIIRQALSNFIS 649 (929)
Q Consensus 590 ~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~~~~--------------------~~~~~~~l~~~f~ 649 (929)
+.-+++.|++|+||||++..+|..+.... ..+..+++....... .......+.+.+.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g---~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~ 174 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKG---FKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVE 174 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTT---CCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCC---CeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHH
Confidence 56688999999999999999999886443 334455554221100 0111223345666
Q ss_pred HHHhcCCcEEEEccc
Q 002386 650 EALDHAPSIVIFDNL 664 (929)
Q Consensus 650 ~a~~~~PsVL~LDEi 664 (929)
.+.+....++++|-.
T Consensus 175 ~~~~~~~D~ViIDTp 189 (297)
T 1j8m_F 175 KFLSEKMEIIIVDTA 189 (297)
T ss_dssp HHHHTTCSEEEEECC
T ss_pred HHHhCCCCEEEEeCC
Confidence 666567789999975
No 396
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=94.67 E-value=0.018 Score=58.36 Aligned_cols=27 Identities=44% Similarity=0.416 Sum_probs=23.1
Q ss_pred CCCceEEEECCCCcHHHHHHHHHHHHh
Q 002386 588 PLPGHILIHGPPGSGKTSLAKAVAKSL 614 (929)
Q Consensus 588 ~~~~~vLL~GppGtGKTtLaralA~~L 614 (929)
+.+.-+.|+|++|+||||+++.+++.+
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 334568899999999999999999875
No 397
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=94.67 E-value=0.028 Score=61.53 Aligned_cols=40 Identities=18% Similarity=0.273 Sum_probs=31.5
Q ss_pred CCCCCceeEEecCCCCcHHHHHHHHHHHc---------CCceEEEeccc
Q 002386 874 PLRLRSNVLLYGPPGCGKTHIVGAAAAAC---------SLRFISVKGPE 913 (929)
Q Consensus 874 ~lr~~sGiLLyGpPGtGKT~LA~alA~e~---------glnfIsVkg~E 913 (929)
+++.+.-++++||||||||++|..+|..+ +.+.+-+...+
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~ 151 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG 151 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 56667778999999999999999999875 45555565544
No 398
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=94.64 E-value=0.024 Score=59.56 Aligned_cols=44 Identities=18% Similarity=0.207 Sum_probs=31.2
Q ss_pred ceEEEECCCCcHHHHHHHHHHHHhccCc--cceeeEEEEecccccc
Q 002386 591 GHILIHGPPGSGKTSLAKAVAKSLEHHK--DLVAHIVFVCCSRLSL 634 (929)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~L~~~~--~~~~~~~~V~~s~L~~ 634 (929)
.-|.|+|++||||||+++.+++.++... .....+..+++.++..
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~ 68 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYR 68 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCcccc
Confidence 4589999999999999999999887321 0012344667766653
No 399
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.64 E-value=0.015 Score=57.98 Aligned_cols=23 Identities=39% Similarity=0.676 Sum_probs=20.6
Q ss_pred eEEEECCCCcHHHHHHHHHHHHh
Q 002386 592 HILIHGPPGSGKTSLAKAVAKSL 614 (929)
Q Consensus 592 ~vLL~GppGtGKTtLaralA~~L 614 (929)
.++|.||+|+||||+++.++..+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~ 26 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQL 26 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHhccc
Confidence 47899999999999999999754
No 400
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.61 E-value=0.017 Score=57.80 Aligned_cols=25 Identities=36% Similarity=0.632 Sum_probs=22.3
Q ss_pred ceEEEECCCCcHHHHHHHHHHHHhc
Q 002386 591 GHILIHGPPGSGKTSLAKAVAKSLE 615 (929)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~L~ 615 (929)
+-+.|.||+|+||||+++.++..+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3478999999999999999999874
No 401
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=94.61 E-value=0.088 Score=58.63 Aligned_cols=30 Identities=33% Similarity=0.433 Sum_probs=25.4
Q ss_pred CCCCceEEEECCCCcHHHHHHHHHHHHhcc
Q 002386 587 LPLPGHILIHGPPGSGKTSLAKAVAKSLEH 616 (929)
Q Consensus 587 ~~~~~~vLL~GppGtGKTtLaralA~~L~~ 616 (929)
+..+..++|.||+|+|||+|++.+++.+..
T Consensus 171 i~rGQr~~IvG~sG~GKTtLl~~Iar~i~~ 200 (422)
T 3ice_A 171 IGRGQRGLIVAPPKAGKTMLLQNIAQSIAY 200 (422)
T ss_dssp CBTTCEEEEECCSSSSHHHHHHHHHHHHHH
T ss_pred ecCCcEEEEecCCCCChhHHHHHHHHHHhh
Confidence 344567999999999999999999998754
No 402
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.58 E-value=0.017 Score=58.06 Aligned_cols=25 Identities=36% Similarity=0.632 Sum_probs=22.1
Q ss_pred ceEEEECCCCcHHHHHHHHHHHHhc
Q 002386 591 GHILIHGPPGSGKTSLAKAVAKSLE 615 (929)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~L~ 615 (929)
+.|+|.||+|+|||||++.+.+...
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCC
Confidence 4599999999999999999988753
No 403
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=94.56 E-value=0.02 Score=62.24 Aligned_cols=29 Identities=28% Similarity=0.559 Sum_probs=26.3
Q ss_pred CCCCCceEEEECCCCcHHHHHHHHHHHHh
Q 002386 586 HLPLPGHILIHGPPGSGKTSLAKAVAKSL 614 (929)
Q Consensus 586 ~~~~~~~vLL~GppGtGKTtLaralA~~L 614 (929)
.++++..+.|+||+|+|||||++.|+..+
T Consensus 122 ~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 122 GIPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred EecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 46777889999999999999999999987
No 404
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=94.56 E-value=0.026 Score=59.49 Aligned_cols=25 Identities=48% Similarity=0.769 Sum_probs=23.2
Q ss_pred ceEEEECCCCcHHHHHHHHHHHHhc
Q 002386 591 GHILIHGPPGSGKTSLAKAVAKSLE 615 (929)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~L~ 615 (929)
..+.|.||+||||||+++.+|+.|+
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~Lg 52 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAESLN 52 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4588999999999999999999987
No 405
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=94.52 E-value=0.036 Score=60.12 Aligned_cols=31 Identities=32% Similarity=0.487 Sum_probs=26.4
Q ss_pred CCCCceEEEECCCCcHHHHHHHHHHHHhccC
Q 002386 587 LPLPGHILIHGPPGSGKTSLAKAVAKSLEHH 617 (929)
Q Consensus 587 ~~~~~~vLL~GppGtGKTtLaralA~~L~~~ 617 (929)
...+.-+.|.||+|+||||+++.+|..+...
T Consensus 97 ~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~ 127 (302)
T 3b9q_A 97 FRKPAVIMIVGVNGGGKTTSLGKLAHRLKNE 127 (302)
T ss_dssp SSSCEEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 4556679999999999999999999988643
No 406
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=94.48 E-value=0.02 Score=57.70 Aligned_cols=24 Identities=46% Similarity=0.706 Sum_probs=22.6
Q ss_pred eEEEECCCCcHHHHHHHHHHHHhc
Q 002386 592 HILIHGPPGSGKTSLAKAVAKSLE 615 (929)
Q Consensus 592 ~vLL~GppGtGKTtLaralA~~L~ 615 (929)
.+.|.|++||||||+++.+|+.++
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 588999999999999999999987
No 407
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.47 E-value=0.037 Score=59.65 Aligned_cols=28 Identities=32% Similarity=0.490 Sum_probs=24.3
Q ss_pred CCceEEEECCCCcHHHHHHHHHHHHhcc
Q 002386 589 LPGHILIHGPPGSGKTSLAKAVAKSLEH 616 (929)
Q Consensus 589 ~~~~vLL~GppGtGKTtLaralA~~L~~ 616 (929)
.+.-+.|.|++||||||+++.+++.+..
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 3456889999999999999999999863
No 408
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=94.45 E-value=0.026 Score=62.57 Aligned_cols=42 Identities=17% Similarity=0.229 Sum_probs=33.6
Q ss_pred CCCCCCceeEEecCCCCcHHHHHHHHHHHc---------CCceEEEecccc
Q 002386 873 APLRLRSNVLLYGPPGCGKTHIVGAAAAAC---------SLRFISVKGPEL 914 (929)
Q Consensus 873 ~~lr~~sGiLLyGpPGtGKT~LA~alA~e~---------glnfIsVkg~EL 914 (929)
.++..++-++++||||||||+|+..+|..+ |...+.|++-+.
T Consensus 126 ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~ 176 (349)
T 1pzn_A 126 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT 176 (349)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSC
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCC
Confidence 356666778899999999999999999887 245677877654
No 409
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=94.44 E-value=0.038 Score=61.43 Aligned_cols=40 Identities=25% Similarity=0.320 Sum_probs=31.8
Q ss_pred CCCCCceeEEecCCCCcHHHHHHHHHHHc---CCceEEEeccc
Q 002386 874 PLRLRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPE 913 (929)
Q Consensus 874 ~lr~~sGiLLyGpPGtGKT~LA~alA~e~---glnfIsVkg~E 913 (929)
++..+.-++++|+||||||+||..+|..+ |.+.+-++..+
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~ 101 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 101 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 46667778999999999999999988754 66777777644
No 410
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=94.41 E-value=0.021 Score=59.11 Aligned_cols=29 Identities=14% Similarity=0.150 Sum_probs=26.7
Q ss_pred eeEEecCCCCcHHHHHHHHHHHcCCceEE
Q 002386 880 NVLLYGPPGCGKTHIVGAAAAACSLRFIS 908 (929)
Q Consensus 880 GiLLyGpPGtGKT~LA~alA~e~glnfIs 908 (929)
-|.+.|++|||||++|+.+|+.+|++|+.
T Consensus 16 iI~i~g~~gsGk~~i~~~la~~lg~~~~d 44 (223)
T 3hdt_A 16 IITIEREYGSGGRIVGKKLAEELGIHFYD 44 (223)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence 46789999999999999999999999876
No 411
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.38 E-value=0.02 Score=58.15 Aligned_cols=26 Identities=50% Similarity=0.599 Sum_probs=23.2
Q ss_pred CceEEEECCCCcHHHHHHHHHHHHhc
Q 002386 590 PGHILIHGPPGSGKTSLAKAVAKSLE 615 (929)
Q Consensus 590 ~~~vLL~GppGtGKTtLaralA~~L~ 615 (929)
+.-+.|.||+||||||+++.++..++
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45588999999999999999999875
No 412
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=94.37 E-value=0.095 Score=52.78 Aligned_cols=24 Identities=46% Similarity=0.576 Sum_probs=20.6
Q ss_pred ceEEEECCCCcHHHHHHHHHHHHh
Q 002386 591 GHILIHGPPGSGKTSLAKAVAKSL 614 (929)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~L 614 (929)
+.+++.+|+|+|||.++-.++..+
T Consensus 49 ~~~li~~~tGsGKT~~~~~~~~~~ 72 (216)
T 3b6e_A 49 KNIIICLPTGSGKTRVAVYIAKDH 72 (216)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHHH
Confidence 469999999999999998877654
No 413
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=94.36 E-value=0.03 Score=58.00 Aligned_cols=39 Identities=31% Similarity=0.185 Sum_probs=29.7
Q ss_pred CCCCCceeEEecCCCCcHHHHHHHHHHH---cCCceEEEecc
Q 002386 874 PLRLRSNVLLYGPPGCGKTHIVGAAAAA---CSLRFISVKGP 912 (929)
Q Consensus 874 ~lr~~sGiLLyGpPGtGKT~LA~alA~e---~glnfIsVkg~ 912 (929)
++..+.-++++||||+|||++|..+|.. .|.+.+.+.+.
T Consensus 19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e 60 (247)
T 2dr3_A 19 GIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALE 60 (247)
T ss_dssp SEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 5666777899999999999998877754 36666666554
No 414
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.34 E-value=0.022 Score=57.87 Aligned_cols=29 Identities=14% Similarity=0.464 Sum_probs=23.8
Q ss_pred CCCCceEEEECCCCcHHHHHHHHHHHHhc
Q 002386 587 LPLPGHILIHGPPGSGKTSLAKAVAKSLE 615 (929)
Q Consensus 587 ~~~~~~vLL~GppGtGKTtLaralA~~L~ 615 (929)
+..+.-+.|.||+|+|||||+++++..+.
T Consensus 17 i~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 17 AAVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp --CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 45556688999999999999999999863
No 415
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=94.30 E-value=0.094 Score=62.44 Aligned_cols=31 Identities=26% Similarity=0.590 Sum_probs=26.8
Q ss_pred cCCCCCceEEEECCCCcHHHHHHHHHHHHhc
Q 002386 585 YHLPLPGHILIHGPPGSGKTSLAKAVAKSLE 615 (929)
Q Consensus 585 ~~~~~~~~vLL~GppGtGKTtLaralA~~L~ 615 (929)
+.++++..+.|.||+|+||||+++.++..+.
T Consensus 376 l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~ 406 (598)
T 3qf4_B 376 FHIKPGQKVALVGPTGSGKTTIVNLLMRFYD 406 (598)
T ss_dssp EECCTTCEEEEECCTTSSTTHHHHHHTTSSC
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhcCcC
Confidence 4467777899999999999999999998764
No 416
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=94.28 E-value=0.019 Score=58.11 Aligned_cols=23 Identities=35% Similarity=0.482 Sum_probs=20.7
Q ss_pred eEEEECCCCcHHHHHHHHHHHHhc
Q 002386 592 HILIHGPPGSGKTSLAKAVAKSLE 615 (929)
Q Consensus 592 ~vLL~GppGtGKTtLaralA~~L~ 615 (929)
.+.|+|++||||||+++.+++ ++
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg 26 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LG 26 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TT
T ss_pred EEEEECCCCCCHHHHHHHHHH-CC
Confidence 478999999999999999987 55
No 417
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=94.28 E-value=0.024 Score=60.22 Aligned_cols=28 Identities=25% Similarity=0.411 Sum_probs=23.4
Q ss_pred CCCCceeEEecCCCCcHHHHHHHHHHHc
Q 002386 875 LRLRSNVLLYGPPGCGKTHIVGAAAAAC 902 (929)
Q Consensus 875 lr~~sGiLLyGpPGtGKT~LA~alA~e~ 902 (929)
+..+.-+++.||+||||||+.+++++.+
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHHhC
Confidence 4455567899999999999999999865
No 418
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=94.25 E-value=0.027 Score=57.20 Aligned_cols=26 Identities=15% Similarity=0.378 Sum_probs=22.8
Q ss_pred CceEEEECCCCcHHHHHHHHHHHHhc
Q 002386 590 PGHILIHGPPGSGKTSLAKAVAKSLE 615 (929)
Q Consensus 590 ~~~vLL~GppGtGKTtLaralA~~L~ 615 (929)
++-+.|.||+|+|||||++++++.+.
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 45689999999999999999998753
No 419
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=94.24 E-value=0.1 Score=67.78 Aligned_cols=32 Identities=13% Similarity=0.314 Sum_probs=27.3
Q ss_pred cCCCCCceEEEECCCCcHHHHHHHHHHHHhcc
Q 002386 585 YHLPLPGHILIHGPPGSGKTSLAKAVAKSLEH 616 (929)
Q Consensus 585 ~~~~~~~~vLL~GppGtGKTtLaralA~~L~~ 616 (929)
+.++++..+.|+||+|||||||++.+.+.+..
T Consensus 439 l~i~~G~~vaivG~sGsGKSTll~ll~~~~~~ 470 (1321)
T 4f4c_A 439 LRVNAGQTVALVGSSGCGKSTIISLLLRYYDV 470 (1321)
T ss_dssp EEECTTCEEEEEECSSSCHHHHHHHHTTSSCC
T ss_pred EeecCCcEEEEEecCCCcHHHHHHHhcccccc
Confidence 44677778999999999999999999987653
No 420
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=94.24 E-value=0.025 Score=67.29 Aligned_cols=34 Identities=26% Similarity=0.352 Sum_probs=30.5
Q ss_pred ceeEEecCCCCcHHHHHHHHHHHc---CCceEEEecc
Q 002386 879 SNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGP 912 (929)
Q Consensus 879 sGiLLyGpPGtGKT~LA~alA~e~---glnfIsVkg~ 912 (929)
.-|+|.|+|||||||+|+++|+.+ |.+|+.+++-
T Consensus 53 ~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD 89 (630)
T 1x6v_B 53 CTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGD 89 (630)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHH
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechH
Confidence 458899999999999999999998 9999998753
No 421
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=94.24 E-value=0.15 Score=63.47 Aligned_cols=25 Identities=20% Similarity=0.284 Sum_probs=20.9
Q ss_pred CCCceEEEECCCCcHHHHHHHHHHH
Q 002386 588 PLPGHILIHGPPGSGKTSLAKAVAK 612 (929)
Q Consensus 588 ~~~~~vLL~GppGtGKTtLaralA~ 612 (929)
..+.-++|+||.|+||||++|.+|.
T Consensus 660 ~~g~i~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 660 DKQMFHIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp TTBCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3345699999999999999999853
No 422
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.24 E-value=0.025 Score=59.26 Aligned_cols=29 Identities=24% Similarity=0.285 Sum_probs=24.2
Q ss_pred CCCCceEEEECCCCcHHHHHHHHHHHHhc
Q 002386 587 LPLPGHILIHGPPGSGKTSLAKAVAKSLE 615 (929)
Q Consensus 587 ~~~~~~vLL~GppGtGKTtLaralA~~L~ 615 (929)
++.+.-+-|.||+|+||||+++.++..++
T Consensus 22 i~~g~iigI~G~~GsGKSTl~k~L~~~lG 50 (245)
T 2jeo_A 22 SMRPFLIGVSGGTASGKSTVCEKIMELLG 50 (245)
T ss_dssp -CCSEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 44445588999999999999999999875
No 423
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.23 E-value=0.19 Score=56.92 Aligned_cols=38 Identities=24% Similarity=0.236 Sum_probs=29.0
Q ss_pred CCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEec
Q 002386 589 LPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (929)
Q Consensus 589 ~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~ 629 (929)
.+..+++.|++|+||||++..+|..+.... ..+..++|
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g---~~Vllvd~ 134 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKG---RRPLLVAA 134 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTT---CCEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC---CeEEEeec
Confidence 456688999999999999999999986543 23444554
No 424
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=94.17 E-value=0.037 Score=60.00 Aligned_cols=26 Identities=46% Similarity=0.692 Sum_probs=23.4
Q ss_pred CceEEEECCCCcHHHHHHHHHHHHhc
Q 002386 590 PGHILIHGPPGSGKTSLAKAVAKSLE 615 (929)
Q Consensus 590 ~~~vLL~GppGtGKTtLaralA~~L~ 615 (929)
+.-++|.||+|+|||+|+..+|+.++
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILP 35 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCC
Confidence 34588999999999999999999976
No 425
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.11 E-value=0.027 Score=58.18 Aligned_cols=29 Identities=28% Similarity=0.482 Sum_probs=24.0
Q ss_pred CCCCceEEEECCCCcHHHHHHHHHHHHhc
Q 002386 587 LPLPGHILIHGPPGSGKTSLAKAVAKSLE 615 (929)
Q Consensus 587 ~~~~~~vLL~GppGtGKTtLaralA~~L~ 615 (929)
.+.+.-+.|.||+|+|||||+++++..+.
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 45556789999999999999999999764
No 426
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=94.10 E-value=0.095 Score=56.57 Aligned_cols=74 Identities=18% Similarity=0.151 Sum_probs=45.0
Q ss_pred CCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccccccC--------------------chhhHHHHHHHHH
Q 002386 589 LPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLE--------------------KGPIIRQALSNFI 648 (929)
Q Consensus 589 ~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~~~--------------------~~~~~~~~l~~~f 648 (929)
.+..+.++|++|+||||+++.+|..+.... ..+..+++.-.... .........+..+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~---~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l 173 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKG---RRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVE 173 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTT---CCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC---CeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHH
Confidence 445688899999999999999999886433 23344443211100 0001112234455
Q ss_pred HHHHhcCCcEEEEcccc
Q 002386 649 SEALDHAPSIVIFDNLD 665 (929)
Q Consensus 649 ~~a~~~~PsVL~LDEiD 665 (929)
..+....+.+++||+.-
T Consensus 174 ~~~~~~~~D~viiDtpp 190 (295)
T 1ls1_A 174 EKARLEARDLILVDTAG 190 (295)
T ss_dssp HHHHHHTCCEEEEECCC
T ss_pred HHHHhCCCCEEEEeCCC
Confidence 55554678899999873
No 427
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=94.09 E-value=0.051 Score=60.35 Aligned_cols=56 Identities=20% Similarity=0.240 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHHHHHHHHHhccC
Q 002386 562 TASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHH 617 (929)
Q Consensus 562 ~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtLaralA~~L~~~ 617 (929)
..+-+.+.+..++.+......-.+....+.-+.|.||+|+||||+++.+|..+...
T Consensus 129 ~~~~l~~~l~~~l~~~~~~~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~ 184 (359)
T 2og2_A 129 IKDALKESVLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNE 184 (359)
T ss_dssp HHHHHHHHHHHHHCCC---CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCcccCCCcceecCCCeEEEEEcCCCChHHHHHHHHHhhcccc
Confidence 44455555554444331000112334556679999999999999999999988643
No 428
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=94.08 E-value=0.14 Score=55.61 Aligned_cols=29 Identities=21% Similarity=0.300 Sum_probs=24.9
Q ss_pred CCceEEEECCCCcHHHHHHHHHHHHhccC
Q 002386 589 LPGHILIHGPPGSGKTSLAKAVAKSLEHH 617 (929)
Q Consensus 589 ~~~~vLL~GppGtGKTtLaralA~~L~~~ 617 (929)
.+..+.|.||+||||||+++.+|..+...
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~ 129 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNL 129 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 34568899999999999999999988644
No 429
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=94.08 E-value=0.026 Score=62.95 Aligned_cols=74 Identities=20% Similarity=0.356 Sum_probs=44.6
Q ss_pred CCCceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEec-cccc-----------c-Cchhh---HHHHHHHHHHHH
Q 002386 588 PLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC-SRLS-----------L-EKGPI---IRQALSNFISEA 651 (929)
Q Consensus 588 ~~~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~-s~L~-----------~-~~~~~---~~~~l~~~f~~a 651 (929)
+++..++|.||+|+||||++++++..+.... ..+.++. .++. . ..... ....+.+.+..+
T Consensus 173 ~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~----g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~ 248 (361)
T 2gza_A 173 QLERVIVVAGETGSGKTTLMKALMQEIPFDQ----RLITIEDVPELFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSC 248 (361)
T ss_dssp HTTCCEEEEESSSSCHHHHHHHHHTTSCTTS----CEEEEESSSCCCCTTCSSEEEEECC----------CCHHHHHHHH
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHhcCCCCc----eEEEECCccccCccccCCEEEEeecCccccccccccCHHHHHHHH
Confidence 3446799999999999999999998775332 2222221 1111 0 00000 111245566667
Q ss_pred HhcCCcEEEEcccc
Q 002386 652 LDHAPSIVIFDNLD 665 (929)
Q Consensus 652 ~~~~PsVL~LDEiD 665 (929)
....|..+++||+.
T Consensus 249 l~~~pd~~l~~e~r 262 (361)
T 2gza_A 249 LRMKPTRILLAELR 262 (361)
T ss_dssp TTSCCSEEEESCCC
T ss_pred HhcCCCEEEEcCch
Confidence 66789999999873
No 430
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=94.01 E-value=0.055 Score=54.58 Aligned_cols=26 Identities=23% Similarity=0.097 Sum_probs=22.0
Q ss_pred ceEEEECCCCcHHHHHHHHHHHHhcc
Q 002386 591 GHILIHGPPGSGKTSLAKAVAKSLEH 616 (929)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~L~~ 616 (929)
.-.+++||.|+||||.+-.+++.+..
T Consensus 9 ~i~v~~G~mgsGKTT~ll~~a~r~~~ 34 (191)
T 1xx6_A 9 WVEVIVGPMYSGKSEELIRRIRRAKI 34 (191)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHH
Confidence 45889999999999999888888743
No 431
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.00 E-value=0.027 Score=58.92 Aligned_cols=36 Identities=8% Similarity=0.048 Sum_probs=23.6
Q ss_pred hhhCCCCCCce--eEEecCCCCcHHHHHHHHHHHcCCc
Q 002386 870 FAQAPLRLRSN--VLLYGPPGCGKTHIVGAAAAACSLR 905 (929)
Q Consensus 870 f~~~~lr~~sG--iLLyGpPGtGKT~LA~alA~e~gln 905 (929)
+.+..+..+.| +-|.||+||||||++++++..+|..
T Consensus 15 l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 15 TENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp --------CCSEEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred ecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 33344444454 5588999999999999999988754
No 432
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=94.00 E-value=0.059 Score=59.50 Aligned_cols=29 Identities=14% Similarity=0.151 Sum_probs=25.2
Q ss_pred CCCCCceeEEecCCCCcHHHHHHHHHHHc
Q 002386 874 PLRLRSNVLLYGPPGCGKTHIVGAAAAAC 902 (929)
Q Consensus 874 ~lr~~sGiLLyGpPGtGKT~LA~alA~e~ 902 (929)
++..+.-++++||||||||++|..+|..+
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~ 146 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTA 146 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHT
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 56667778899999999999999999874
No 433
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=93.98 E-value=0.034 Score=54.27 Aligned_cols=28 Identities=25% Similarity=0.248 Sum_probs=23.5
Q ss_pred CCCCceeEEecCCCCcHHHHHHHHHHHc
Q 002386 875 LRLRSNVLLYGPPGCGKTHIVGAAAAAC 902 (929)
Q Consensus 875 lr~~sGiLLyGpPGtGKT~LA~alA~e~ 902 (929)
++.+.-+.|.||.|||||||.+++++..
T Consensus 30 i~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 30 TEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 3444457799999999999999999987
No 434
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=93.95 E-value=0.048 Score=55.15 Aligned_cols=27 Identities=33% Similarity=0.348 Sum_probs=23.6
Q ss_pred CCceEEEECCCCcHHHHHHHHHHHHhc
Q 002386 589 LPGHILIHGPPGSGKTSLAKAVAKSLE 615 (929)
Q Consensus 589 ~~~~vLL~GppGtGKTtLaralA~~L~ 615 (929)
.+.-+.|.|++|+||||+++.++..+.
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~~~~ 47 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQTLR 47 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 345688999999999999999999874
No 435
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=93.94 E-value=0.051 Score=64.58 Aligned_cols=31 Identities=19% Similarity=0.474 Sum_probs=26.5
Q ss_pred cCCCCCceEEEECCCCcHHHHHHHHHHHHhc
Q 002386 585 YHLPLPGHILIHGPPGSGKTSLAKAVAKSLE 615 (929)
Q Consensus 585 ~~~~~~~~vLL~GppGtGKTtLaralA~~L~ 615 (929)
+.++++..+.|.||+|+||||+++.++..+.
T Consensus 364 l~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~ 394 (587)
T 3qf4_A 364 FSVKPGSLVAVLGETGSGKSTLMNLIPRLID 394 (587)
T ss_dssp EEECTTCEEEEECSSSSSHHHHHHTTTTSSC
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCcc
Confidence 3466677899999999999999999998764
No 436
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=93.92 E-value=0.04 Score=61.03 Aligned_cols=40 Identities=23% Similarity=0.233 Sum_probs=31.0
Q ss_pred CCCCCceeEEecCCCCcHHHHHHHHHHHc---CCceEEEeccc
Q 002386 874 PLRLRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPE 913 (929)
Q Consensus 874 ~lr~~sGiLLyGpPGtGKT~LA~alA~e~---glnfIsVkg~E 913 (929)
++..++-++++||||||||+||..+|..+ |.+.+-+...+
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~ 99 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEH 99 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 55666778999999999999999988654 56666666544
No 437
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=93.91 E-value=0.023 Score=66.27 Aligned_cols=71 Identities=17% Similarity=0.207 Sum_probs=42.8
Q ss_pred CceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEecc-ccccC-----------chhhHHHHHHHHHHHHHhcCCc
Q 002386 590 PGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCS-RLSLE-----------KGPIIRQALSNFISEALDHAPS 657 (929)
Q Consensus 590 ~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s-~L~~~-----------~~~~~~~~l~~~f~~a~~~~Ps 657 (929)
+.+++|.||+||||||++++++..+.... ..+.+... ++... ..+...-.+.+.+..+....|.
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~~i~~~~----giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~~~LR~~PD 335 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMMFIPPDA----KVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLRAALRQRPD 335 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGSCTTC----CEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHHTTGGGCCS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCCCC----CEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHHHhhccCCC
Confidence 35699999999999999999998875332 22333221 11100 0000001133445555567899
Q ss_pred EEEEccc
Q 002386 658 IVIFDNL 664 (929)
Q Consensus 658 VL~LDEi 664 (929)
+++++|+
T Consensus 336 ~iivgEi 342 (511)
T 2oap_1 336 YIIVGEV 342 (511)
T ss_dssp EEEESCC
T ss_pred eEEeCCc
Confidence 9999997
No 438
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=93.89 E-value=0.07 Score=53.90 Aligned_cols=32 Identities=16% Similarity=0.175 Sum_probs=25.6
Q ss_pred CceeEEecCCCCcHHHHHHHHHHHc---CCceEEE
Q 002386 878 RSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISV 909 (929)
Q Consensus 878 ~sGiLLyGpPGtGKT~LA~alA~e~---glnfIsV 909 (929)
+.-+.+.|++||||||++++++..+ |..++.+
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~ 56 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVF 56 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEe
Confidence 4457789999999999999999875 6665544
No 439
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=93.89 E-value=0.041 Score=57.11 Aligned_cols=27 Identities=41% Similarity=0.603 Sum_probs=24.1
Q ss_pred CCceEEEECCCCcHHHHHHHHHHHHhc
Q 002386 589 LPGHILIHGPPGSGKTSLAKAVAKSLE 615 (929)
Q Consensus 589 ~~~~vLL~GppGtGKTtLaralA~~L~ 615 (929)
.+..+.|.|++||||||+++.+++.++
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~lg 41 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDFG 41 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 345699999999999999999999887
No 440
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=93.88 E-value=0.024 Score=56.93 Aligned_cols=23 Identities=35% Similarity=0.319 Sum_probs=21.2
Q ss_pred ceEEEECCCCcHHHHHHHHHHHH
Q 002386 591 GHILIHGPPGSGKTSLAKAVAKS 613 (929)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~ 613 (929)
..|.|+|++||||||+++.+++.
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHC
Confidence 45899999999999999999986
No 441
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=93.87 E-value=0.034 Score=61.15 Aligned_cols=25 Identities=48% Similarity=0.603 Sum_probs=23.0
Q ss_pred ceEEEECCCCcHHHHHHHHHHHHhc
Q 002386 591 GHILIHGPPGSGKTSLAKAVAKSLE 615 (929)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~L~ 615 (929)
.-|+|.||+|+|||++++.+|+.++
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 3589999999999999999999986
No 442
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=93.84 E-value=0.034 Score=56.47 Aligned_cols=29 Identities=24% Similarity=0.379 Sum_probs=23.1
Q ss_pred CCCCceeEEecCCCCcHHHHHHHHHHHcC
Q 002386 875 LRLRSNVLLYGPPGCGKTHIVGAAAAACS 903 (929)
Q Consensus 875 lr~~sGiLLyGpPGtGKT~LA~alA~e~g 903 (929)
+..+.-+.|.||+|||||||++++++...
T Consensus 17 i~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 17 AAVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp --CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 34445577999999999999999999873
No 443
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=93.84 E-value=0.033 Score=57.31 Aligned_cols=25 Identities=20% Similarity=0.417 Sum_probs=21.9
Q ss_pred CceeEEecCCCCcHHHHHHHHHHHc
Q 002386 878 RSNVLLYGPPGCGKTHIVGAAAAAC 902 (929)
Q Consensus 878 ~sGiLLyGpPGtGKT~LA~alA~e~ 902 (929)
+.-+.|.||+|||||||++++++..
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3447789999999999999999977
No 444
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=93.81 E-value=0.037 Score=59.53 Aligned_cols=24 Identities=38% Similarity=0.487 Sum_probs=21.6
Q ss_pred ceEEEECCCCcHHHHHHHHHHHHh
Q 002386 591 GHILIHGPPGSGKTSLAKAVAKSL 614 (929)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~L 614 (929)
.-|+|.|+|||||||+++.+++.+
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~ 26 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKN 26 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhC
Confidence 458999999999999999999864
No 445
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=93.77 E-value=0.02 Score=59.32 Aligned_cols=28 Identities=25% Similarity=0.425 Sum_probs=17.7
Q ss_pred CCCCceEEEECCCCcHHHHHHHHHH-HHh
Q 002386 587 LPLPGHILIHGPPGSGKTSLAKAVA-KSL 614 (929)
Q Consensus 587 ~~~~~~vLL~GppGtGKTtLaralA-~~L 614 (929)
++.+.-+.|.||+|+||||+++.++ ..+
T Consensus 24 v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 24 KSVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp EECCCEEEEECSCC----CHHHHHHC---
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 3445668899999999999999999 765
No 446
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=93.76 E-value=0.19 Score=55.26 Aligned_cols=30 Identities=27% Similarity=0.320 Sum_probs=24.8
Q ss_pred CCCCceEEEECCCCcHHHHHHHHHHHHhcc
Q 002386 587 LPLPGHILIHGPPGSGKTSLAKAVAKSLEH 616 (929)
Q Consensus 587 ~~~~~~vLL~GppGtGKTtLaralA~~L~~ 616 (929)
...+..+.|.|+||+|||||+++++..+..
T Consensus 52 ~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~ 81 (337)
T 2qm8_A 52 TGRAIRVGITGVPGVGKSTTIDALGSLLTA 81 (337)
T ss_dssp CCCSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHhhhh
Confidence 344456889999999999999999987743
No 447
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=93.74 E-value=0.032 Score=56.98 Aligned_cols=24 Identities=38% Similarity=0.498 Sum_probs=21.6
Q ss_pred ceEEEECCCCcHHHHHHHHHHHHhc
Q 002386 591 GHILIHGPPGSGKTSLAKAVAKSLE 615 (929)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~L~ 615 (929)
.-|.|+|++||||||+++.+++ ++
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~-lg 28 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD-LG 28 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH-TT
T ss_pred eEEEEECCCCCCHHHHHHHHHH-cC
Confidence 4589999999999999999998 65
No 448
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=93.74 E-value=0.016 Score=58.76 Aligned_cols=24 Identities=29% Similarity=0.549 Sum_probs=22.2
Q ss_pred EEEECCCCcHHHHHHHHHHHHhcc
Q 002386 593 ILIHGPPGSGKTSLAKAVAKSLEH 616 (929)
Q Consensus 593 vLL~GppGtGKTtLaralA~~L~~ 616 (929)
|.|.|++||||||+++.+++.+..
T Consensus 3 I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 3 IAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHh
Confidence 789999999999999999999863
No 449
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=93.74 E-value=0.045 Score=56.80 Aligned_cols=31 Identities=23% Similarity=0.372 Sum_probs=25.5
Q ss_pred ceeEEecCCCCcHHHHHHHHHHHcC--CceEEE
Q 002386 879 SNVLLYGPPGCGKTHIVGAAAAACS--LRFISV 909 (929)
Q Consensus 879 sGiLLyGpPGtGKT~LA~alA~e~g--lnfIsV 909 (929)
.-|.|.|+|||||||+++.+++.++ ..++..
T Consensus 27 ~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~~ 59 (229)
T 4eaq_A 27 AFITFEGPEGSGKTTVINEVYHRLVKDYDVIMT 59 (229)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhcCCCceee
Confidence 3466889999999999999999886 566554
No 450
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=93.69 E-value=0.044 Score=62.48 Aligned_cols=38 Identities=26% Similarity=0.412 Sum_probs=29.3
Q ss_pred CceEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEecc
Q 002386 590 PGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCS 630 (929)
Q Consensus 590 ~~~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s 630 (929)
+..++|+|++|+||||++..+|..+...+ ..+..+++.
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G---~kVllv~~D 136 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRG---LKPALIAAD 136 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHH---CCEEEECCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcC---CeEEEEecc
Confidence 45699999999999999999999885332 345556654
No 451
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=93.66 E-value=0.1 Score=61.92 Aligned_cols=31 Identities=16% Similarity=0.339 Sum_probs=26.5
Q ss_pred cCCCCCceEEEECCCCcHHHHHHHHHHHHhc
Q 002386 585 YHLPLPGHILIHGPPGSGKTSLAKAVAKSLE 615 (929)
Q Consensus 585 ~~~~~~~~vLL~GppGtGKTtLaralA~~L~ 615 (929)
+.++++..+.|.||+|+||||+++.++..+.
T Consensus 362 l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~ 392 (578)
T 4a82_A 362 LSIEKGETVAFVGMSGGGKSTLINLIPRFYD 392 (578)
T ss_dssp EEECTTCEEEEECSTTSSHHHHHTTTTTSSC
T ss_pred EEECCCCEEEEECCCCChHHHHHHHHhcCCC
Confidence 3466677899999999999999999998764
No 452
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=93.64 E-value=0.066 Score=60.38 Aligned_cols=42 Identities=17% Similarity=0.253 Sum_probs=31.2
Q ss_pred CCCCCCceeEEecCCCCcHHHHHHHHHHHc---------CCceEEEecccc
Q 002386 873 APLRLRSNVLLYGPPGCGKTHIVGAAAAAC---------SLRFISVKGPEL 914 (929)
Q Consensus 873 ~~lr~~sGiLLyGpPGtGKT~LA~alA~e~---------glnfIsVkg~EL 914 (929)
.++....-++|+||||||||+|+..+|-.+ +...+.+++-+.
T Consensus 173 GGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~ 223 (400)
T 3lda_A 173 GGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGT 223 (400)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSC
T ss_pred CCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCc
Confidence 367777778999999999999999776433 344677776553
No 453
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=93.61 E-value=0.051 Score=59.03 Aligned_cols=42 Identities=10% Similarity=0.027 Sum_probs=30.5
Q ss_pred CCCCCceeEEecCCCCcHHHHHHHHHHHc-----CCceEEEecccccc
Q 002386 874 PLRLRSNVLLYGPPGCGKTHIVGAAAAAC-----SLRFISVKGPELLN 916 (929)
Q Consensus 874 ~lr~~sGiLLyGpPGtGKT~LA~alA~e~-----glnfIsVkg~ELl~ 916 (929)
|+..+ -++++||||||||+||-.++.++ |..++-|++.+=+.
T Consensus 25 Gl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~ 71 (333)
T 3io5_A 25 GMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGIT 71 (333)
T ss_dssp CBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCC
T ss_pred CCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhh
Confidence 44444 47899999999999987666543 66788888766443
No 454
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=93.57 E-value=0.058 Score=60.63 Aligned_cols=36 Identities=19% Similarity=0.342 Sum_probs=31.9
Q ss_pred ceeEEecCCCCcHHHHHHHHHHHcC---CceEEEecccc
Q 002386 879 SNVLLYGPPGCGKTHIVGAAAAACS---LRFISVKGPEL 914 (929)
Q Consensus 879 sGiLLyGpPGtGKT~LA~alA~e~g---lnfIsVkg~EL 914 (929)
..+|++|++|||||++|+++...++ .+|+.|++..+
T Consensus 161 ~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~ 199 (387)
T 1ny5_A 161 CPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASI 199 (387)
T ss_dssp SCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTS
T ss_pred CCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCC
Confidence 4689999999999999999998875 68999998765
No 455
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=93.55 E-value=0.048 Score=53.92 Aligned_cols=30 Identities=20% Similarity=0.329 Sum_probs=25.5
Q ss_pred CceeEEecCCCCcHHHHHHHHHHHcCCceEE
Q 002386 878 RSNVLLYGPPGCGKTHIVGAAAAACSLRFIS 908 (929)
Q Consensus 878 ~sGiLLyGpPGtGKT~LA~alA~e~glnfIs 908 (929)
..|+||.|++|+|||++|.++.+. |..|++
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r-G~~lva 45 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR-GHQLVC 45 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT-TCEEEE
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc-CCeEec
Confidence 569999999999999999999874 666555
No 456
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=93.53 E-value=0.045 Score=56.83 Aligned_cols=27 Identities=37% Similarity=0.584 Sum_probs=24.1
Q ss_pred CceEEEECCCCcHHHHHHHHHHHHhcc
Q 002386 590 PGHILIHGPPGSGKTSLAKAVAKSLEH 616 (929)
Q Consensus 590 ~~~vLL~GppGtGKTtLaralA~~L~~ 616 (929)
+.-+.|.|++|+||||+++.+++.+..
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 456889999999999999999999864
No 457
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=93.50 E-value=0.033 Score=59.46 Aligned_cols=29 Identities=24% Similarity=0.226 Sum_probs=23.8
Q ss_pred CCCCCceeEEecCCCCcHHHHHHHHHHHc
Q 002386 874 PLRLRSNVLLYGPPGCGKTHIVGAAAAAC 902 (929)
Q Consensus 874 ~lr~~sGiLLyGpPGtGKT~LA~alA~e~ 902 (929)
++..+.-++|+||||||||+||..+|..+
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45556678899999999999999998643
No 458
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=93.47 E-value=0.04 Score=56.19 Aligned_cols=25 Identities=40% Similarity=0.663 Sum_probs=23.0
Q ss_pred ceEEEECCCCcHHHHHHHHHHHHhc
Q 002386 591 GHILIHGPPGSGKTSLAKAVAKSLE 615 (929)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~L~ 615 (929)
..+.|+|++||||||+++.+++.++
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~g 28 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASELS 28 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3589999999999999999999887
No 459
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=93.44 E-value=0.051 Score=58.98 Aligned_cols=38 Identities=21% Similarity=0.330 Sum_probs=28.1
Q ss_pred CCCceeEEecCCCCcHHHHHHHHHHHc---CCceEEEecccc
Q 002386 876 RLRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPEL 914 (929)
Q Consensus 876 r~~sGiLLyGpPGtGKT~LA~alA~e~---glnfIsVkg~EL 914 (929)
..+.-+.|.||+||||||+++.+|..+ +.. |.+.+.++
T Consensus 98 ~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~-V~l~g~d~ 138 (302)
T 3b9q_A 98 RKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTK-VLMAAGDT 138 (302)
T ss_dssp SSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCC-EEEECCCC
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCe-EEEEeecc
Confidence 345567799999999999999999875 333 44555554
No 460
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=93.43 E-value=0.074 Score=59.27 Aligned_cols=40 Identities=20% Similarity=0.204 Sum_probs=31.2
Q ss_pred CCCCCceeEEecCCCCcHHHHHHHHHHHc---CCceEEEeccc
Q 002386 874 PLRLRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPE 913 (929)
Q Consensus 874 ~lr~~sGiLLyGpPGtGKT~LA~alA~e~---glnfIsVkg~E 913 (929)
++..+.-++++|+||||||+||..+|..+ |.+.+-++..+
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~ 112 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEH 112 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 56667778999999999999999888764 56666665544
No 461
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=93.40 E-value=0.043 Score=59.02 Aligned_cols=38 Identities=16% Similarity=0.100 Sum_probs=28.7
Q ss_pred CCCCCCceeEEecCCCCcHHHHHHHHHHHc----CCceEEEe
Q 002386 873 APLRLRSNVLLYGPPGCGKTHIVGAAAAAC----SLRFISVK 910 (929)
Q Consensus 873 ~~lr~~sGiLLyGpPGtGKT~LA~alA~e~----glnfIsVk 910 (929)
.+++.+.-++|.||||+|||+|++.+|... |.+.+.+.
T Consensus 30 ~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~ 71 (296)
T 1cr0_A 30 LGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM 71 (296)
T ss_dssp CSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred cCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 356666778899999999999999998764 54544443
No 462
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=93.35 E-value=0.05 Score=59.03 Aligned_cols=25 Identities=36% Similarity=0.489 Sum_probs=22.5
Q ss_pred ceEEEECCCCcHHHHHHHHHHHHhc
Q 002386 591 GHILIHGPPGSGKTSLAKAVAKSLE 615 (929)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~L~ 615 (929)
.-++|.||+|||||+|+..+|+.++
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~ 28 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLN 28 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTT
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCc
Confidence 3488999999999999999999876
No 463
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=93.35 E-value=0.033 Score=54.85 Aligned_cols=20 Identities=35% Similarity=0.504 Sum_probs=17.0
Q ss_pred CceeEEecCCCCcHHHHHHH
Q 002386 878 RSNVLLYGPPGCGKTHIVGA 897 (929)
Q Consensus 878 ~sGiLLyGpPGtGKT~LA~a 897 (929)
+.-+.|.||+|||||||+++
T Consensus 9 gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHH
Confidence 34477999999999999994
No 464
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=93.34 E-value=0.039 Score=59.18 Aligned_cols=24 Identities=33% Similarity=0.448 Sum_probs=21.3
Q ss_pred ceEEEECCCCcHHHHHHHHHHHHhc
Q 002386 591 GHILIHGPPGSGKTSLAKAVAKSLE 615 (929)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~L~ 615 (929)
.-|.|+|++||||||+++.++ .++
T Consensus 76 ~iI~I~G~~GSGKSTva~~La-~lg 99 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLK-NLG 99 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHH-HHT
T ss_pred EEEEEECCCCCCHHHHHHHHH-HCC
Confidence 458999999999999999999 555
No 465
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=93.33 E-value=0.029 Score=56.84 Aligned_cols=25 Identities=28% Similarity=0.356 Sum_probs=22.6
Q ss_pred ceEEEECCCCcHHHHHHHHHHHHhc
Q 002386 591 GHILIHGPPGSGKTSLAKAVAKSLE 615 (929)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~L~ 615 (929)
.+++|.||+|+|||++|..+++...
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g~ 59 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRGH 59 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTTC
T ss_pred EEEEEECCCCCCHHHHHHHHHHhCC
Confidence 5799999999999999999998753
No 466
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=93.32 E-value=0.085 Score=61.65 Aligned_cols=26 Identities=31% Similarity=0.511 Sum_probs=23.5
Q ss_pred ceEEEECCCCcHHHHHHHHHHHHhcc
Q 002386 591 GHILIHGPPGSGKTSLAKAVAKSLEH 616 (929)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~L~~ 616 (929)
.-|+++|.||+||||+++.+|+.++.
T Consensus 36 ~lIvlvGlpGSGKSTia~~La~~L~~ 61 (520)
T 2axn_A 36 TVIVMVGLPARGKTYISKKLTRYLNW 61 (520)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 45899999999999999999999863
No 467
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=93.26 E-value=0.046 Score=55.04 Aligned_cols=24 Identities=42% Similarity=0.899 Sum_probs=22.1
Q ss_pred eEEEECCCCcHHHHHHHHHHHHhc
Q 002386 592 HILIHGPPGSGKTSLAKAVAKSLE 615 (929)
Q Consensus 592 ~vLL~GppGtGKTtLaralA~~L~ 615 (929)
.+.|.||+|+||||+++.++..+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhcc
Confidence 488999999999999999999874
No 468
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=93.22 E-value=0.041 Score=61.58 Aligned_cols=34 Identities=21% Similarity=0.282 Sum_probs=26.5
Q ss_pred hhhhCCCCCCceeEEecCCCCcHHHHHHHHHHHc
Q 002386 869 IFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC 902 (929)
Q Consensus 869 if~~~~lr~~sGiLLyGpPGtGKT~LA~alA~e~ 902 (929)
.+.+..+..+.-+++.||+||||||+.+++++.+
T Consensus 127 ~l~~l~~~~g~~i~ivG~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 127 KVLELCHRKMGLILVTGPTGSGKSTTIASMIDYI 160 (372)
T ss_dssp SHHHHTTSSSEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred HHHHHhhcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3444335556668899999999999999999865
No 469
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=93.16 E-value=0.23 Score=54.97 Aligned_cols=26 Identities=31% Similarity=0.468 Sum_probs=23.1
Q ss_pred ceEEEECCCCcHHHHHHHHHHHHhcc
Q 002386 591 GHILIHGPPGSGKTSLAKAVAKSLEH 616 (929)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~L~~ 616 (929)
..|.|+|+||+||||++..++..+..
T Consensus 80 ~~I~i~G~~G~GKSTl~~~L~~~l~~ 105 (355)
T 3p32_A 80 HRVGITGVPGVGKSTAIEALGMHLIE 105 (355)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 45999999999999999999998743
No 470
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=93.12 E-value=0.056 Score=55.93 Aligned_cols=36 Identities=25% Similarity=0.194 Sum_probs=26.9
Q ss_pred CCCCCceeEEecCCCCcHHHHHHHHHHH----cCCceEEE
Q 002386 874 PLRLRSNVLLYGPPGCGKTHIVGAAAAA----CSLRFISV 909 (929)
Q Consensus 874 ~lr~~sGiLLyGpPGtGKT~LA~alA~e----~glnfIsV 909 (929)
|+..++-++++|+||+|||++|.-+|.. .|.+.+-+
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~ 65 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFV 65 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEE
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceee
Confidence 5677778899999999999999776533 35554444
No 471
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=93.11 E-value=0.06 Score=59.82 Aligned_cols=40 Identities=20% Similarity=0.347 Sum_probs=29.1
Q ss_pred CCCCceeEEecCCCCcHHHHHHHHHHHc---CCceEEEeccccc
Q 002386 875 LRLRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELL 915 (929)
Q Consensus 875 lr~~sGiLLyGpPGtGKT~LA~alA~e~---glnfIsVkg~ELl 915 (929)
+..+.-+.|.||+||||||+++.+|..+ +.. |.+.+.++.
T Consensus 154 ~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~-V~l~g~D~~ 196 (359)
T 2og2_A 154 FRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTK-VLMAAGDTF 196 (359)
T ss_dssp SSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCC-EEEECCCCS
T ss_pred cCCCeEEEEEcCCCChHHHHHHHHHhhccccCCE-EEEeccccc
Confidence 3445567899999999999999999875 333 445555543
No 472
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=93.07 E-value=0.033 Score=58.23 Aligned_cols=29 Identities=28% Similarity=0.502 Sum_probs=25.1
Q ss_pred CCCCceEEEECCCCcHHHHHHHHHHHHhc
Q 002386 587 LPLPGHILIHGPPGSGKTSLAKAVAKSLE 615 (929)
Q Consensus 587 ~~~~~~vLL~GppGtGKTtLaralA~~L~ 615 (929)
++++..+.|.||+|+|||||++.++..+.
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 56 (237)
T 2cbz_A 28 IPEGALVAVVGQVGCGKSSLLSALLAEMD 56 (237)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTCSE
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 55667799999999999999999998764
No 473
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=93.01 E-value=0.055 Score=58.72 Aligned_cols=33 Identities=15% Similarity=0.276 Sum_probs=26.9
Q ss_pred CCCCCceeEEecCCCCcHHHHHHHHHHHcCCce
Q 002386 874 PLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRF 906 (929)
Q Consensus 874 ~lr~~sGiLLyGpPGtGKT~LA~alA~e~glnf 906 (929)
.+..+.-+.|+||+|||||||++++++.+....
T Consensus 122 ~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~~G~I 154 (305)
T 2v9p_A 122 GIPKKNCLAFIGPPNTGKSMLCNSLIHFLGGSV 154 (305)
T ss_dssp TCTTCSEEEEECSSSSSHHHHHHHHHHHHTCEE
T ss_pred EecCCCEEEEECCCCCcHHHHHHHHhhhcCceE
Confidence 355566688999999999999999999874443
No 474
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=92.95 E-value=0.26 Score=57.75 Aligned_cols=30 Identities=30% Similarity=0.375 Sum_probs=25.1
Q ss_pred CCCCceEEEECCCCcHHHHHHHHHHHHhcc
Q 002386 587 LPLPGHILIHGPPGSGKTSLAKAVAKSLEH 616 (929)
Q Consensus 587 ~~~~~~vLL~GppGtGKTtLaralA~~L~~ 616 (929)
++.+.-+-|.||+|||||||+++++..+..
T Consensus 291 i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p 320 (538)
T 3ozx_A 291 AKEGEIIGILGPNGIGKTTFARILVGEITA 320 (538)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 345567889999999999999999987643
No 475
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=92.93 E-value=0.059 Score=58.73 Aligned_cols=30 Identities=27% Similarity=0.383 Sum_probs=25.3
Q ss_pred CCCCceEEEECCCCcHHHHHHHHHHHHhcc
Q 002386 587 LPLPGHILIHGPPGSGKTSLAKAVAKSLEH 616 (929)
Q Consensus 587 ~~~~~~vLL~GppGtGKTtLaralA~~L~~ 616 (929)
...+.-+.|.||+|+|||||++.|+..+..
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccc
Confidence 344556889999999999999999998853
No 476
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=92.92 E-value=0.084 Score=58.89 Aligned_cols=36 Identities=19% Similarity=0.378 Sum_probs=31.7
Q ss_pred ceeEEecCCCCcHHHHHHHHHHHcCCc--eEEEecccc
Q 002386 879 SNVLLYGPPGCGKTHIVGAAAAACSLR--FISVKGPEL 914 (929)
Q Consensus 879 sGiLLyGpPGtGKT~LA~alA~e~gln--fIsVkg~EL 914 (929)
..+|++|++||||+++|+++...++.. |+.|++..+
T Consensus 153 ~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~ 190 (368)
T 3dzd_A 153 APVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASI 190 (368)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSS
T ss_pred hhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccC
Confidence 459999999999999999999888654 999999754
No 477
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=92.91 E-value=0.14 Score=52.44 Aligned_cols=26 Identities=19% Similarity=0.080 Sum_probs=21.2
Q ss_pred eEEEECCCCcHHHHHHHHHHHHhccC
Q 002386 592 HILIHGPPGSGKTSLAKAVAKSLEHH 617 (929)
Q Consensus 592 ~vLL~GppGtGKTtLaralA~~L~~~ 617 (929)
-.+++|+.|+||||.+-.++..+...
T Consensus 30 l~vitG~MgsGKTT~lL~~a~r~~~~ 55 (214)
T 2j9r_A 30 IEVICGSMFSGKSEELIRRVRRTQFA 55 (214)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 36689999999999998888876543
No 478
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=92.90 E-value=0.056 Score=61.86 Aligned_cols=25 Identities=32% Similarity=0.557 Sum_probs=22.1
Q ss_pred ceEEEECCCCcHHHHHHHHHHHHhc
Q 002386 591 GHILIHGPPGSGKTSLAKAVAKSLE 615 (929)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~L~ 615 (929)
..++|.|++|+|||+|++.++....
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~~ 176 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNIA 176 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhhh
Confidence 4599999999999999999988764
No 479
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=92.89 E-value=0.064 Score=61.83 Aligned_cols=38 Identities=21% Similarity=0.323 Sum_probs=27.3
Q ss_pred CCCceeEEecCCCCcHHHHHHHHHHHc---CCceEEEecccc
Q 002386 876 RLRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPEL 914 (929)
Q Consensus 876 r~~sGiLLyGpPGtGKT~LA~alA~e~---glnfIsVkg~EL 914 (929)
..+.-++|.|++||||||+++.||..+ +.. |.+.+.+.
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~-V~l~g~D~ 331 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQFEQQGKS-VMLAAGDT 331 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCC-EEEECCCT
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHhhhcCCe-EEEecCcc
Confidence 334557799999999999999999865 333 44444444
No 480
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=92.86 E-value=0.046 Score=63.95 Aligned_cols=28 Identities=21% Similarity=0.185 Sum_probs=23.6
Q ss_pred ceeEEecCCCCcHHHHHHHHHHHcCCce
Q 002386 879 SNVLLYGPPGCGKTHIVGAAAAACSLRF 906 (929)
Q Consensus 879 sGiLLyGpPGtGKT~LA~alA~e~glnf 906 (929)
.-|+|.|.||+|||++|+.+|+.++..+
T Consensus 36 ~lIvlvGlpGSGKSTia~~La~~L~~~~ 63 (520)
T 2axn_A 36 TVIVMVGLPARGKTYISKKLTRYLNWIG 63 (520)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcC
Confidence 3478999999999999999999885443
No 481
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=92.81 E-value=0.045 Score=64.35 Aligned_cols=39 Identities=26% Similarity=0.282 Sum_probs=30.1
Q ss_pred CCCceeEEecCCCCcHHHHHHHHHHHcC----CceEEEecccc
Q 002386 876 RLRSNVLLYGPPGCGKTHIVGAAAAACS----LRFISVKGPEL 914 (929)
Q Consensus 876 r~~sGiLLyGpPGtGKT~LA~alA~e~g----lnfIsVkg~EL 914 (929)
..+.-+.|.|++|||||||++++|+.++ ..+..+++-++
T Consensus 367 ~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 367 RQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIV 409 (552)
T ss_dssp GSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHH
T ss_pred ccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHH
Confidence 3445578999999999999999999874 34545777655
No 482
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=92.77 E-value=0.03 Score=58.01 Aligned_cols=29 Identities=24% Similarity=0.258 Sum_probs=24.3
Q ss_pred CCCCceEEEECCCCcHHHHHHHHHHHHhc
Q 002386 587 LPLPGHILIHGPPGSGKTSLAKAVAKSLE 615 (929)
Q Consensus 587 ~~~~~~vLL~GppGtGKTtLaralA~~L~ 615 (929)
++++..+.|.||+|+|||||+++++..+.
T Consensus 27 i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 55 (224)
T 2pcj_A 27 VKKGEFVSIIGASGSGKSTLLYILGLLDA 55 (224)
T ss_dssp EETTCEEEEEECTTSCHHHHHHHHTTSSC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 44556688999999999999999997654
No 483
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=92.76 E-value=0.074 Score=59.71 Aligned_cols=25 Identities=32% Similarity=0.551 Sum_probs=22.8
Q ss_pred ceEEEECCCCcHHHHHHHHHHHHhc
Q 002386 591 GHILIHGPPGSGKTSLAKAVAKSLE 615 (929)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~L~ 615 (929)
.-++|.||+|+|||+|+..+|+.++
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC
Confidence 3488999999999999999999986
No 484
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=92.71 E-value=0.083 Score=57.36 Aligned_cols=35 Identities=20% Similarity=0.225 Sum_probs=26.2
Q ss_pred CCCceeEEecCCCCcHHHHHHHHHHHc---CCceEEEe
Q 002386 876 RLRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVK 910 (929)
Q Consensus 876 r~~sGiLLyGpPGtGKT~LA~alA~e~---glnfIsVk 910 (929)
..+.-+++.||+||||||++..+|..+ |....-+.
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~ 139 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAA 139 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEc
Confidence 345567899999999999999999765 55544443
No 485
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=92.68 E-value=0.43 Score=58.57 Aligned_cols=25 Identities=24% Similarity=0.372 Sum_probs=22.0
Q ss_pred CCceEEEECCCCcHHHHHHHHHHHH
Q 002386 589 LPGHILIHGPPGSGKTSLAKAVAKS 613 (929)
Q Consensus 589 ~~~~vLL~GppGtGKTtLaralA~~ 613 (929)
.+..++|+||.|+||||++|.++..
T Consensus 606 ~g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 606 QRRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCChHHHHHHHHHH
Confidence 4456999999999999999999875
No 486
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=92.63 E-value=0.041 Score=58.38 Aligned_cols=29 Identities=24% Similarity=0.297 Sum_probs=24.7
Q ss_pred CCCCceEEEECCCCcHHHHHHHHHHHHhc
Q 002386 587 LPLPGHILIHGPPGSGKTSLAKAVAKSLE 615 (929)
Q Consensus 587 ~~~~~~vLL~GppGtGKTtLaralA~~L~ 615 (929)
++.+..+.|.||+|+|||||+++++..+.
T Consensus 29 i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~ 57 (262)
T 1b0u_A 29 ARAGDVISIIGSSGSGKSTFLRCINFLEK 57 (262)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 45556788999999999999999998654
No 487
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=92.62 E-value=0.21 Score=49.97 Aligned_cols=164 Identities=10% Similarity=0.063 Sum_probs=0.0
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHH-HHHHHHHhcc---CccceeeEEEE
Q 002386 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSL-AKAVAKSLEH---HKDLVAHIVFV 627 (929)
Q Consensus 552 ~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtL-aralA~~L~~---~~~~~~~~~~V 627 (929)
++.+++..+..++.+.+ .-+..+..-+...-..+..++.+++.+|+|+|||.. +..+...+.. .......++.+
T Consensus 2 ~f~~~~l~~~l~~~l~~--~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~ 79 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHG--RGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLT 79 (207)
T ss_dssp CGGGSCCCHHHHHHHHH--TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEEC
T ss_pred ChhhcCCCHHHHHHHHH--cCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEE
Q ss_pred eccccccCchhhHHHH--------------------------------HHHHHHHHHh-----cCCcEEEEccccccccC
Q 002386 628 CCSRLSLEKGPIIRQA--------------------------------LSNFISEALD-----HAPSIVIFDNLDSIISS 670 (929)
Q Consensus 628 ~~s~L~~~~~~~~~~~--------------------------------l~~~f~~a~~-----~~PsVL~LDEiD~L~~~ 670 (929)
....+.........+. ...+...... ..-.++++||+|.+..
T Consensus 80 P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~- 158 (207)
T 2gxq_A 80 PTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLS- 158 (207)
T ss_dssp SSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHHHHH-
T ss_pred CCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChhHhhc-
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCCCcEEEEEecCCCCccccccccCCCcceEeeCC
Q 002386 671 SSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLP 739 (929)
Q Consensus 671 ~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~VivIattn~~~~L~~~L~~~~Rf~~~i~l~ 739 (929)
......+...+...... .-+++.|+..+..+......-.+-...+.+.
T Consensus 159 -------------~~~~~~~~~i~~~~~~~--------~~~i~~SAT~~~~~~~~~~~~~~~p~~i~~~ 206 (207)
T 2gxq_A 159 -------------MGFEEEVEALLSATPPS--------RQTLLFSATLPSWAKRLAERYMKNPVLINVI 206 (207)
T ss_dssp -------------TTCHHHHHHHHHTSCTT--------SEEEEECSSCCHHHHHHHHHHCSSCEEEECC
T ss_pred -------------cchHHHHHHHHHhCCcc--------CeEEEEEEecCHHHHHHHHHHcCCCeEEEcC
No 488
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=92.62 E-value=0.04 Score=57.76 Aligned_cols=29 Identities=21% Similarity=0.390 Sum_probs=25.1
Q ss_pred CCCCceEEEECCCCcHHHHHHHHHHHHhc
Q 002386 587 LPLPGHILIHGPPGSGKTSLAKAVAKSLE 615 (929)
Q Consensus 587 ~~~~~~vLL~GppGtGKTtLaralA~~L~ 615 (929)
++++..+.|.||+|+|||||+++++..+.
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (243)
T 1mv5_A 25 AQPNSIIAFAGPSGGGKSTIFSLLERFYQ 53 (243)
T ss_dssp ECTTEEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 55666799999999999999999998764
No 489
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=92.62 E-value=0.045 Score=60.77 Aligned_cols=34 Identities=26% Similarity=0.453 Sum_probs=26.3
Q ss_pred CceeEEecCCCCcHHHHHHHHHHHc----CCceEEEec
Q 002386 878 RSNVLLYGPPGCGKTHIVGAAAAAC----SLRFISVKG 911 (929)
Q Consensus 878 ~sGiLLyGpPGtGKT~LA~alA~e~----glnfIsVkg 911 (929)
+.-+++.||+||||||+.++++... +.+.+.+.-
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed 160 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIED 160 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEES
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccC
Confidence 3457789999999999999998765 556666543
No 490
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=92.61 E-value=0.12 Score=55.94 Aligned_cols=37 Identities=19% Similarity=0.201 Sum_probs=27.5
Q ss_pred CceeEEecCCCCcHHHHHHHHHHHc---CCceEEEeccccc
Q 002386 878 RSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELL 915 (929)
Q Consensus 878 ~sGiLLyGpPGtGKT~LA~alA~e~---glnfIsVkg~ELl 915 (929)
+.-+.|.||+||||||+++.+|..+ +. -|.+.+.++.
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll~~~~g-~V~l~g~D~~ 141 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYYQNLGK-KVMFCAGDTF 141 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHHHTTTC-CEEEECCCCS
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCC-EEEEEeecCC
Confidence 4567789999999999999999776 22 3455555543
No 491
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=92.60 E-value=0.03 Score=59.27 Aligned_cols=28 Identities=18% Similarity=0.393 Sum_probs=23.8
Q ss_pred eeEEecCCCCcHHHHHHHHHHHc-CCceE
Q 002386 880 NVLLYGPPGCGKTHIVGAAAAAC-SLRFI 907 (929)
Q Consensus 880 GiLLyGpPGtGKT~LA~alA~e~-glnfI 907 (929)
-|.|.|++||||||+|+.+|+.+ +..++
T Consensus 26 ~I~ieG~~GsGKST~~~~L~~~l~~~~~i 54 (263)
T 1p5z_B 26 KISIEGNIAAGKSTFVNILKQLCEDWEVV 54 (263)
T ss_dssp EEEEECSTTSSHHHHHTTTGGGCTTEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCCEEE
Confidence 46788999999999999999998 54444
No 492
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=92.59 E-value=0.069 Score=58.22 Aligned_cols=29 Identities=28% Similarity=0.281 Sum_probs=24.8
Q ss_pred CCCCCceeEEecCCCCcHHHHHHHHHHHc
Q 002386 874 PLRLRSNVLLYGPPGCGKTHIVGAAAAAC 902 (929)
Q Consensus 874 ~lr~~sGiLLyGpPGtGKT~LA~alA~e~ 902 (929)
+++.++-++++|+||||||++|..+|..+
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~~ 122 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVNL 122 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 56666778999999999999999998763
No 493
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=92.53 E-value=0.054 Score=58.86 Aligned_cols=25 Identities=20% Similarity=0.171 Sum_probs=21.9
Q ss_pred ceeEEecCCCCcHHHHHHHHHHHcC
Q 002386 879 SNVLLYGPPGCGKTHIVGAAAAACS 903 (929)
Q Consensus 879 sGiLLyGpPGtGKT~LA~alA~e~g 903 (929)
.-+-|.||+|||||||+++++...+
T Consensus 81 ~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3466899999999999999999876
No 494
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=92.52 E-value=0.049 Score=57.03 Aligned_cols=28 Identities=21% Similarity=0.444 Sum_probs=24.3
Q ss_pred CCCCceEEEECCCCcHHHHHHHHHHHHhc
Q 002386 587 LPLPGHILIHGPPGSGKTSLAKAVAKSLE 615 (929)
Q Consensus 587 ~~~~~~vLL~GppGtGKTtLaralA~~L~ 615 (929)
++. ..+.|.||+|+|||||+++++..+.
T Consensus 22 i~~-e~~~liG~nGsGKSTLl~~l~Gl~~ 49 (240)
T 2onk_A 22 MGR-DYCVLLGPTGAGKSVFLELIAGIVK 49 (240)
T ss_dssp ECS-SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred ECC-EEEEEECCCCCCHHHHHHHHhCCCC
Confidence 556 6788999999999999999998754
No 495
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=92.51 E-value=0.089 Score=51.95 Aligned_cols=26 Identities=23% Similarity=0.174 Sum_probs=23.1
Q ss_pred eEEEECCCCcHHHHHHHHHHHHhccC
Q 002386 592 HILIHGPPGSGKTSLAKAVAKSLEHH 617 (929)
Q Consensus 592 ~vLL~GppGtGKTtLaralA~~L~~~ 617 (929)
-+.|.|++|+||||++..++..+...
T Consensus 6 ~i~i~G~sGsGKTTl~~~L~~~l~~~ 31 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLMEKWVAAAVRE 31 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhhHhc
Confidence 48899999999999999999988643
No 496
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=92.48 E-value=0.044 Score=59.12 Aligned_cols=39 Identities=13% Similarity=0.275 Sum_probs=26.4
Q ss_pred eEEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccccc
Q 002386 592 HILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLS 633 (929)
Q Consensus 592 ~vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~L~ 633 (929)
-|.|+|++||||||+++.+++.++... ..+..+++..+.
T Consensus 7 iIgItG~sGSGKSTva~~L~~~lg~~~---~~~~vI~~D~~~ 45 (290)
T 1a7j_A 7 IISVTGSSGAGTSTVKHTFDQIFRREG---VKAVSIEGDAFH 45 (290)
T ss_dssp EEEEESCC---CCTHHHHHHHHHHHHT---CCEEEEEGGGGB
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhcC---CCeeEeecchhh
Confidence 488999999999999999999876321 224556666655
No 497
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=92.48 E-value=0.052 Score=57.80 Aligned_cols=27 Identities=33% Similarity=0.450 Sum_probs=23.7
Q ss_pred CCCCceEEEECCCCcHHHHHHHHHHHH
Q 002386 587 LPLPGHILIHGPPGSGKTSLAKAVAKS 613 (929)
Q Consensus 587 ~~~~~~vLL~GppGtGKTtLaralA~~ 613 (929)
++.+..+.|.||+|+|||||++.++..
T Consensus 43 i~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 43 VHPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 555667899999999999999999985
No 498
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=92.46 E-value=0.052 Score=54.16 Aligned_cols=32 Identities=28% Similarity=0.534 Sum_probs=26.2
Q ss_pred EEEECCCCcHHHHHHHHHHHHhccCccceeeEEEEeccc
Q 002386 593 ILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSR 631 (929)
Q Consensus 593 vLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~V~~s~ 631 (929)
+|++|++|||||++|+.++.. + .+.+|+....
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~------~~~~yiaT~~ 33 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-A------PQVLYIATSQ 33 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-C------SSEEEEECCC
T ss_pred EEEECCCCCcHHHHHHHHHhc-C------CCeEEEecCC
Confidence 799999999999999999865 3 4567777654
No 499
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=92.44 E-value=0.39 Score=48.75 Aligned_cols=155 Identities=10% Similarity=0.127 Sum_probs=0.0
Q ss_pred eecccCccCCccccccccccchhHHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEECCCCcHHHHH-HHHHHHHhccC
Q 002386 539 TVKERGSTQGFDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSL-AKAVAKSLEHH 617 (929)
Q Consensus 539 ~~~~~~~~~~~~~~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~vLL~GppGtGKTtL-aralA~~L~~~ 617 (929)
+............++.+++-....++.+.+ .-+..+..-+...-..+..++.+++.+|+|+|||.. +-.+...+...
T Consensus 2 ~~~~~~~~~~~~~~f~~l~l~~~l~~~l~~--~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~ 79 (224)
T 1qde_A 2 ESQIQTNYDKVVYKFDDMELDENLLRGVFG--YGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTS 79 (224)
T ss_dssp ---CCBSCCCCCCCGGGGTCCHHHHHHHHH--HTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTT
T ss_pred CcccccccCcccCChhhcCCCHHHHHHHHH--CCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhcc
Q ss_pred ccceeeEEEEeccccccCchhhHHHH---------------------------------HHHHHHHHHh-----cCCcEE
Q 002386 618 KDLVAHIVFVCCSRLSLEKGPIIRQA---------------------------------LSNFISEALD-----HAPSIV 659 (929)
Q Consensus 618 ~~~~~~~~~V~~s~L~~~~~~~~~~~---------------------------------l~~~f~~a~~-----~~PsVL 659 (929)
......++.+....+........... ...++..... ..-.++
T Consensus 80 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~i 159 (224)
T 1qde_A 80 VKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMF 159 (224)
T ss_dssp CCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------CTTCSEEEECHHHHHHHHHTTSSCCTTCCEE
T ss_pred CCCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcCCCCCEEEECHHHHHHHHHhCCcchhhCcEE
Q ss_pred EEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccCccCCCcEEEEEec
Q 002386 660 IFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASA 716 (929)
Q Consensus 660 ~LDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~VivIatt 716 (929)
++||+|.+.. ......+...+........ ++++.+|
T Consensus 160 ViDEah~~~~--------------~~~~~~l~~i~~~~~~~~~-------~i~lSAT 195 (224)
T 1qde_A 160 ILDEADEMLS--------------SGFKEQIYQIFTLLPPTTQ-------VVLLSAT 195 (224)
T ss_dssp EEETHHHHHH--------------TTCHHHHHHHHHHSCTTCE-------EEEEESS
T ss_pred EEcChhHHhh--------------hhhHHHHHHHHHhCCccCe-------EEEEEee
No 500
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=92.43 E-value=0.045 Score=58.05 Aligned_cols=28 Identities=29% Similarity=0.450 Sum_probs=24.6
Q ss_pred CCCCceEEEECCCCcHHHHHHHHHHHHh
Q 002386 587 LPLPGHILIHGPPGSGKTSLAKAVAKSL 614 (929)
Q Consensus 587 ~~~~~~vLL~GppGtGKTtLaralA~~L 614 (929)
++++..+.|.||+|+|||||+++++..+
T Consensus 43 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 43 IPSGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 5566779999999999999999999865
Done!