Query 002388
Match_columns 929
No_of_seqs 364 out of 1505
Neff 5.0
Searched_HMMs 29240
Date Tue Mar 26 00:21:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002388.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002388hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lq6_A Bromodomain-containing 99.6 7.1E-16 2.4E-20 139.4 4.8 71 48-118 9-86 (87)
2 2lq6_A Bromodomain-containing 99.2 5.6E-12 1.9E-16 114.0 3.9 65 822-886 10-85 (87)
3 2ku3_A Bromodomain-containing 98.8 1.4E-09 4.7E-14 94.9 2.9 56 700-755 11-67 (71)
4 2l43_A N-teminal domain from h 98.6 1.1E-08 3.8E-13 92.6 3.6 53 702-754 22-75 (88)
5 1wev_A Riken cDNA 1110020M19; 98.5 4.4E-08 1.5E-12 88.6 2.4 58 700-757 11-75 (88)
6 2yt5_A Metal-response element- 98.4 1E-07 3.6E-12 81.2 4.0 52 703-754 4-61 (66)
7 4gne_A Histone-lysine N-methyl 98.4 4.9E-07 1.7E-11 84.7 6.8 77 702-795 12-96 (107)
8 1xwh_A Autoimmune regulator; P 98.3 5.5E-07 1.9E-11 77.1 4.5 53 700-756 3-57 (66)
9 2yql_A PHD finger protein 21A; 98.2 6.7E-07 2.3E-11 74.2 3.7 50 700-753 4-55 (56)
10 1mm2_A MI2-beta; PHD, zinc fin 98.2 8.5E-07 2.9E-11 74.9 3.5 49 702-754 6-56 (61)
11 1f62_A Transcription factor WS 98.2 7.9E-07 2.7E-11 72.1 3.0 46 707-753 2-49 (51)
12 2l5u_A Chromodomain-helicase-D 98.1 1.7E-06 5.9E-11 73.0 4.4 51 700-754 6-58 (61)
13 1fp0_A KAP-1 corepressor; PHD 98.1 2.7E-06 9.4E-11 77.0 5.3 52 699-754 19-72 (88)
14 2puy_A PHD finger protein 21A; 98.1 1.4E-06 4.9E-11 73.1 3.2 47 704-754 4-52 (60)
15 2lri_C Autoimmune regulator; Z 98.0 2.6E-06 8.7E-11 73.3 3.9 46 705-754 12-59 (66)
16 2e6r_A Jumonji/ARID domain-con 98.0 2.1E-06 7.3E-11 78.2 2.9 52 702-754 13-66 (92)
17 2kwj_A Zinc finger protein DPF 97.9 6.8E-06 2.3E-10 77.5 3.6 47 706-752 2-59 (114)
18 3v43_A Histone acetyltransfera 97.9 7.6E-06 2.6E-10 76.8 3.9 47 706-752 6-62 (112)
19 2e6s_A E3 ubiquitin-protein li 97.8 1.3E-05 4.3E-10 70.9 4.2 47 706-753 27-76 (77)
20 2ysm_A Myeloid/lymphoid or mix 97.8 2.3E-05 7.9E-10 73.2 6.0 77 702-802 4-85 (111)
21 3asl_A E3 ubiquitin-protein li 97.7 1.6E-05 5.4E-10 69.0 3.3 46 707-753 20-68 (70)
22 1wen_A Inhibitor of growth fam 97.6 4.1E-05 1.4E-09 66.6 4.9 49 703-754 14-65 (71)
23 3o36_A Transcription intermedi 97.6 3.2E-05 1.1E-09 78.2 4.4 50 703-756 2-53 (184)
24 3shb_A E3 ubiquitin-protein li 97.6 2.4E-05 8.3E-10 69.2 3.0 46 707-753 28-76 (77)
25 2kwj_A Zinc finger protein DPF 97.6 2.2E-05 7.4E-10 74.0 2.4 50 706-756 59-110 (114)
26 3u5n_A E3 ubiquitin-protein li 97.6 3.8E-05 1.3E-09 79.2 4.1 51 702-756 4-56 (207)
27 2k16_A Transcription initiatio 97.6 2.8E-05 9.5E-10 67.8 2.6 53 702-755 15-69 (75)
28 2jmi_A Protein YNG1, ING1 homo 97.5 3.6E-05 1.2E-09 70.0 3.2 51 702-755 23-77 (90)
29 2vnf_A ING 4, P29ING4, inhibit 97.5 2.5E-05 8.4E-10 65.8 1.7 47 704-753 9-58 (60)
30 3c6w_A P28ING5, inhibitor of g 97.5 3.1E-05 1.1E-09 65.0 1.8 48 703-753 7-57 (59)
31 3v43_A Histone acetyltransfera 97.5 6.4E-05 2.2E-09 70.5 3.8 49 704-752 60-110 (112)
32 1weu_A Inhibitor of growth fam 97.4 8.2E-05 2.8E-09 67.8 4.1 50 703-755 34-86 (91)
33 2ro1_A Transcription intermedi 97.3 8.4E-05 2.9E-09 75.8 2.6 46 705-754 2-49 (189)
34 2g6q_A Inhibitor of growth pro 97.2 9.5E-05 3.3E-09 62.7 1.9 49 703-754 9-60 (62)
35 1we9_A PHD finger family prote 97.2 0.00026 9E-09 59.7 4.4 53 702-754 3-58 (64)
36 3ask_A E3 ubiquitin-protein li 97.1 0.0002 6.8E-09 75.0 3.4 47 706-753 175-224 (226)
37 2lv9_A Histone-lysine N-methyl 97.1 0.00046 1.6E-08 63.5 5.1 47 705-753 28-75 (98)
38 2ysm_A Myeloid/lymphoid or mix 97.1 0.00032 1.1E-08 65.4 3.9 48 706-754 55-104 (111)
39 3o70_A PHD finger protein 13; 96.9 0.00059 2E-08 58.8 4.0 50 703-754 17-67 (68)
40 1x4i_A Inhibitor of growth pro 96.9 0.00032 1.1E-08 60.8 2.3 49 704-755 5-56 (70)
41 1wee_A PHD finger family prote 96.8 0.00077 2.6E-08 58.4 3.7 51 703-754 14-66 (72)
42 2vpb_A Hpygo1, pygopus homolog 96.7 0.00048 1.6E-08 58.9 1.6 50 703-752 6-64 (65)
43 1wew_A DNA-binding family prot 96.7 0.00099 3.4E-08 58.7 3.6 51 703-755 14-73 (78)
44 1wep_A PHF8; structural genomi 96.5 0.0011 3.9E-08 58.3 2.6 52 703-755 10-64 (79)
45 1wem_A Death associated transc 96.4 0.0012 4.2E-08 57.6 2.4 50 704-755 15-71 (76)
46 2kgg_A Histone demethylase jar 96.1 0.0019 6.5E-08 52.6 1.9 46 707-752 4-52 (52)
47 2ri7_A Nucleosome-remodeling f 96.1 0.00092 3.1E-08 66.7 -0.1 51 703-754 6-59 (174)
48 2xb1_A Pygopus homolog 2, B-ce 96.1 0.0024 8.1E-08 59.5 2.5 50 706-755 4-62 (105)
49 2rsd_A E3 SUMO-protein ligase 95.8 0.0059 2E-07 52.3 3.7 49 704-754 9-65 (68)
50 3o7a_A PHD finger protein 13 v 95.7 0.0053 1.8E-07 49.9 3.0 44 709-753 7-51 (52)
51 2lbm_A Transcriptional regulat 95.5 0.0047 1.6E-07 60.5 2.2 48 702-753 60-116 (142)
52 3kqi_A GRC5, PHD finger protei 94.8 0.0074 2.5E-07 52.6 1.2 48 706-754 11-61 (75)
53 3ql9_A Transcriptional regulat 94.5 0.0097 3.3E-07 57.4 1.1 48 702-753 54-110 (129)
54 3kv5_D JMJC domain-containing 92.6 0.025 8.6E-07 65.5 0.5 49 705-754 37-88 (488)
55 3lqh_A Histone-lysine N-methyl 92.0 0.045 1.6E-06 55.7 1.5 49 706-754 3-63 (183)
56 1xn7_A Hypothetical protein YH 91.7 0.077 2.6E-06 46.8 2.4 35 220-254 3-37 (78)
57 2k02_A Ferrous iron transport 90.7 0.092 3.2E-06 47.4 2.0 34 221-254 4-37 (87)
58 1wew_A DNA-binding family prot 89.5 0.2 6.8E-06 43.9 3.0 30 827-857 16-47 (78)
59 1we9_A PHD finger family prote 88.0 0.2 6.9E-06 41.9 2.0 30 827-858 6-38 (64)
60 1wem_A Death associated transc 87.9 0.28 9.5E-06 42.6 2.8 28 827-857 16-45 (76)
61 3kv4_A PHD finger protein 8; e 86.8 0.084 2.9E-06 60.5 -1.4 48 707-754 6-56 (447)
62 1wep_A PHF8; structural genomi 85.9 0.44 1.5E-05 41.7 3.0 27 828-857 13-42 (79)
63 2lv9_A Histone-lysine N-methyl 85.5 0.41 1.4E-05 43.7 2.8 46 828-885 29-76 (98)
64 1weu_A Inhibitor of growth fam 85.3 0.48 1.6E-05 43.1 3.0 31 827-858 36-68 (91)
65 1wen_A Inhibitor of growth fam 84.9 0.54 1.8E-05 40.7 3.1 31 827-858 16-48 (71)
66 3o70_A PHD finger protein 13; 84.4 0.48 1.6E-05 40.6 2.5 30 827-859 19-50 (68)
67 1wil_A KIAA1045 protein; ring 84.2 0.42 1.4E-05 42.9 2.0 50 703-754 13-76 (89)
68 2rsd_A E3 SUMO-protein ligase 82.3 0.65 2.2E-05 39.6 2.5 29 828-857 11-41 (68)
69 1wee_A PHD finger family prote 82.3 0.48 1.7E-05 40.7 1.7 30 827-859 16-48 (72)
70 3c6w_A P28ING5, inhibitor of g 82.3 0.43 1.5E-05 39.8 1.3 31 827-858 9-41 (59)
71 2k16_A Transcription initiatio 81.8 0.51 1.7E-05 40.7 1.6 30 828-859 19-50 (75)
72 2l0k_A Stage III sporulation p 81.4 0.87 3E-05 41.4 3.1 49 222-271 10-60 (93)
73 2g6q_A Inhibitor of growth pro 81.2 0.49 1.7E-05 39.9 1.3 32 827-859 11-44 (62)
74 4gne_A Histone-lysine N-methyl 80.4 0.92 3.1E-05 42.4 2.9 31 827-858 15-45 (107)
75 3kqi_A GRC5, PHD finger protei 79.8 0.62 2.1E-05 40.4 1.5 28 829-858 11-41 (75)
76 3pur_A Lysine-specific demethy 79.8 0.85 2.9E-05 53.1 3.1 37 718-754 55-94 (528)
77 2kgg_A Histone demethylase jar 79.1 0.72 2.5E-05 37.3 1.6 28 829-857 4-34 (52)
78 1jko_C HIN recombinase, DNA-in 78.4 1.9 6.6E-05 32.8 3.8 31 224-255 13-43 (52)
79 2vnf_A ING 4, P29ING4, inhibit 78.2 0.7 2.4E-05 38.6 1.3 31 827-858 10-42 (60)
80 2xb1_A Pygopus homolog 2, B-ce 78.2 0.77 2.6E-05 42.5 1.7 29 828-857 4-35 (105)
81 2ri7_A Nucleosome-remodeling f 77.7 0.61 2.1E-05 46.2 0.9 28 827-857 8-38 (174)
82 3o7a_A PHD finger protein 13 v 77.6 0.76 2.6E-05 37.1 1.3 26 831-858 7-34 (52)
83 2zet_C Melanophilin; complex, 77.5 0.92 3.1E-05 44.9 2.1 48 706-754 69-117 (153)
84 2puy_A PHD finger protein 21A; 77.2 0.89 3E-05 37.7 1.6 48 827-885 5-52 (60)
85 2l5u_A Chromodomain-helicase-D 77.1 0.95 3.2E-05 37.8 1.8 30 827-859 11-40 (61)
86 1r69_A Repressor protein CI; g 77.1 2.4 8.2E-05 34.2 4.2 53 220-272 1-53 (69)
87 2yql_A PHD finger protein 21A; 76.8 1.2 4E-05 36.5 2.2 30 827-859 9-38 (56)
88 1f62_A Transcription factor WS 76.6 0.95 3.3E-05 36.1 1.6 29 829-859 2-32 (51)
89 3b7h_A Prophage LP1 protein 11 76.5 2.3 7.9E-05 35.3 4.1 54 219-272 6-61 (78)
90 2lri_C Autoimmune regulator; Z 76.4 1.2 4.2E-05 37.9 2.3 30 827-859 12-41 (66)
91 1uxc_A FRUR (1-57), fructose r 76.2 1.4 4.7E-05 37.3 2.5 49 234-282 1-53 (65)
92 1xwh_A Autoimmune regulator; P 75.8 1.3 4.5E-05 37.4 2.3 30 827-859 8-37 (66)
93 4bbq_A Lysine-specific demethy 74.7 0.89 3E-05 42.2 1.1 37 718-754 72-114 (117)
94 2jmi_A Protein YNG1, ING1 homo 74.7 1.2 4E-05 40.5 1.8 30 827-857 26-57 (90)
95 1zug_A Phage 434 CRO protein; 74.4 3.1 0.0001 33.8 4.2 52 220-271 3-54 (71)
96 2vpb_A Hpygo1, pygopus homolog 74.1 1.2 4.1E-05 37.9 1.6 29 828-857 9-40 (65)
97 2r1j_L Repressor protein C2; p 73.3 2.5 8.6E-05 33.9 3.4 52 220-271 5-57 (68)
98 2ku3_A Bromodomain-containing 71.9 2.2 7.6E-05 36.9 2.8 32 827-860 16-51 (71)
99 2yt5_A Metal-response element- 71.4 2.1 7.1E-05 35.9 2.5 31 827-859 6-40 (66)
100 1tc3_C Protein (TC3 transposas 71.4 3 0.0001 31.0 3.3 33 221-254 10-42 (51)
101 1adr_A P22 C2 repressor; trans 71.3 2.9 9.8E-05 34.4 3.4 53 220-272 5-58 (76)
102 1y7y_A C.AHDI; helix-turn-heli 71.1 3.6 0.00012 33.6 3.9 54 219-272 12-66 (74)
103 1mm2_A MI2-beta; PHD, zinc fin 70.9 1.6 5.5E-05 36.4 1.7 30 827-859 9-38 (61)
104 2xi8_A Putative transcription 70.9 2.9 9.8E-05 33.4 3.2 49 224-272 5-54 (66)
105 2ict_A Antitoxin HIGA; helix-t 70.6 3.3 0.00011 36.1 3.7 57 216-272 4-61 (94)
106 3t76_A VANU, transcriptional r 70.1 3.2 0.00011 36.8 3.6 64 206-272 13-76 (88)
107 2k9q_A Uncharacterized protein 69.3 3 0.0001 35.0 3.1 53 220-272 2-55 (77)
108 3rsn_A SET1/ASH2 histone methy 69.3 2.9 9.8E-05 42.4 3.4 49 831-885 8-59 (177)
109 2wiu_B HTH-type transcriptiona 68.9 4 0.00014 34.7 3.9 57 216-272 8-65 (88)
110 3bs3_A Putative DNA-binding pr 68.6 3.4 0.00012 34.0 3.3 52 221-272 11-63 (76)
111 2l8n_A Transcriptional repress 68.3 2.8 9.6E-05 35.6 2.7 49 233-281 9-58 (67)
112 2b5a_A C.BCLI; helix-turn-heli 66.8 4.8 0.00017 33.2 3.9 53 220-272 10-63 (77)
113 2d8s_A Cellular modulator of i 66.8 3.1 0.00011 36.5 2.8 51 704-754 14-67 (80)
114 4b6d_A RAC GTPase-activating p 66.6 2.4 8.3E-05 35.6 1.9 34 705-738 19-52 (61)
115 2htj_A P fimbrial regulatory p 65.9 2.6 8.9E-05 36.2 2.0 32 223-254 4-35 (81)
116 1x4i_A Inhibitor of growth pro 65.8 3.4 0.00012 35.6 2.7 31 828-859 7-39 (70)
117 3asl_A E3 ubiquitin-protein li 65.8 2.3 7.8E-05 36.6 1.6 28 829-858 20-49 (70)
118 1wil_A KIAA1045 protein; ring 65.2 2 6.8E-05 38.6 1.1 35 828-864 16-51 (89)
119 1wev_A Riken cDNA 1110020M19; 64.4 2.7 9.3E-05 37.6 1.9 54 827-886 16-73 (88)
120 2jt1_A PEFI protein; solution 63.8 3.3 0.00011 36.3 2.3 33 222-254 7-45 (77)
121 1zbd_B Rabphilin-3A; G protein 63.7 4.1 0.00014 39.4 3.2 49 706-754 56-107 (134)
122 1iym_A EL5; ring-H2 finger, ub 63.4 4.8 0.00016 31.5 3.0 49 703-753 3-51 (55)
123 2kpj_A SOS-response transcript 63.1 6.1 0.00021 34.5 3.9 54 219-272 8-62 (94)
124 4bbq_A Lysine-specific demethy 62.9 4.2 0.00014 37.6 3.0 83 706-808 8-97 (117)
125 2e6s_A E3 ubiquitin-protein li 62.7 2.9 9.8E-05 36.7 1.7 30 828-859 27-58 (77)
126 1faq_A RAF-1; transferase, ser 62.3 5.1 0.00018 31.8 3.0 32 705-739 14-45 (52)
127 3lqh_A Histone-lysine N-methyl 62.1 2.8 9.5E-05 42.6 1.7 28 828-857 3-36 (183)
128 3trb_A Virulence-associated pr 61.7 7.3 0.00025 35.5 4.3 59 216-274 9-69 (104)
129 1x57_A Endothelial differentia 61.2 11 0.00037 32.5 5.2 55 219-273 12-67 (91)
130 3cec_A Putative antidote prote 60.7 6.7 0.00023 34.8 3.8 56 217-272 15-71 (104)
131 1u2w_A CADC repressor, cadmium 60.6 4.8 0.00016 37.3 3.0 54 223-276 46-116 (122)
132 2ao9_A Phage protein; structur 60.6 5 0.00017 39.8 3.2 41 233-274 48-119 (155)
133 1ptq_A Protein kinase C delta 60.5 5.7 0.00019 31.2 2.9 33 705-737 11-44 (50)
134 2l43_A N-teminal domain from h 60.4 4.7 0.00016 36.1 2.7 32 827-860 25-60 (88)
135 3omt_A Uncharacterized protein 60.4 5.2 0.00018 33.0 2.9 49 224-272 12-61 (73)
136 2a20_A Regulating synaptic mem 60.3 5.8 0.0002 33.4 3.0 52 702-753 6-59 (62)
137 1nd9_A Translation initiation 59.9 3.9 0.00013 31.7 1.8 23 233-255 2-24 (49)
138 1fp0_A KAP-1 corepressor; PHD 59.9 5 0.00017 36.3 2.8 48 827-885 25-72 (88)
139 3rsn_A SET1/ASH2 histone methy 59.5 11 0.00036 38.2 5.4 70 711-804 10-81 (177)
140 2a6c_A Helix-turn-helix motif; 59.4 5.6 0.00019 34.0 3.0 56 218-273 16-73 (83)
141 2jvl_A TRMBF1; coactivator, he 58.9 13 0.00046 33.5 5.6 57 216-272 30-89 (107)
142 2ewt_A BLDD, putative DNA-bind 58.4 8.6 0.0003 31.2 3.8 53 220-272 8-63 (71)
143 2yuu_A NPKC-delta, protein kin 58.3 6.7 0.00023 34.4 3.3 35 704-738 27-62 (83)
144 3cuo_A Uncharacterized HTH-typ 58.0 5 0.00017 34.8 2.5 34 222-255 27-60 (99)
145 3s8q_A R-M controller protein; 57.9 8.6 0.00029 32.3 3.9 53 220-272 11-64 (82)
146 1q1h_A TFE, transcription fact 57.7 4.3 0.00015 36.5 2.1 33 222-254 21-54 (110)
147 2e6r_A Jumonji/ARID domain-con 56.5 3.3 0.00011 37.3 1.1 48 828-885 17-66 (92)
148 2enn_A NPKC-theta, protein kin 56.4 6.2 0.00021 34.3 2.7 35 704-738 33-68 (77)
149 2glo_A Brinker CG9653-PA; prot 56.1 8.5 0.00029 31.1 3.3 35 217-252 6-44 (59)
150 2enz_A NPKC-theta, protein kin 55.6 8.2 0.00028 32.2 3.3 35 704-738 22-57 (65)
151 3kz3_A Repressor protein CI; f 55.4 9.1 0.00031 32.2 3.6 54 219-272 11-65 (80)
152 3uej_A NPKC-delta, protein kin 55.1 6 0.0002 33.1 2.3 34 705-738 20-54 (65)
153 2x48_A CAG38821; archeal virus 55.1 6.8 0.00023 30.8 2.5 32 222-254 21-52 (55)
154 3o36_A Transcription intermedi 55.0 3.8 0.00013 41.0 1.3 29 828-859 5-33 (184)
155 3jth_A Transcription activator 54.9 5.3 0.00018 35.1 2.1 32 223-255 27-58 (98)
156 2ef8_A C.ECOT38IS, putative tr 54.7 11 0.00037 31.5 4.0 54 219-273 9-64 (84)
157 1qbj_A Protein (double-strande 54.3 5.5 0.00019 35.1 2.1 33 222-254 13-48 (81)
158 2fnf_X Putative RAS effector N 54.2 6.7 0.00023 33.8 2.5 32 704-737 34-65 (72)
159 1xmk_A Double-stranded RNA-spe 54.1 4.6 0.00016 35.6 1.5 34 222-255 14-48 (79)
160 2eby_A Putative HTH-type trans 54.0 8.3 0.00028 34.7 3.3 56 217-272 7-64 (113)
161 4a0z_A Transcription factor FA 53.6 5.8 0.0002 40.2 2.4 45 221-266 14-58 (190)
162 2kko_A Possible transcriptiona 53.1 6.3 0.00021 35.7 2.3 32 223-255 29-60 (108)
163 3u5n_A E3 ubiquitin-protein li 52.7 4.4 0.00015 41.4 1.3 30 827-859 7-36 (207)
164 1lmb_3 Protein (lambda repress 50.9 11 0.00039 32.2 3.5 53 220-272 17-70 (92)
165 2csz_A Synaptotagmin-like prot 50.8 6.4 0.00022 34.7 1.9 50 703-754 23-73 (76)
166 2l1p_A DNA-binding protein SAT 50.5 8 0.00027 34.6 2.4 49 220-271 21-69 (83)
167 1y8f_A UNC-13 homolog A, MUNC1 49.9 8.6 0.00029 32.3 2.5 34 705-738 24-58 (66)
168 3f6w_A XRE-family like protein 49.3 13 0.00044 31.2 3.5 53 220-272 14-67 (83)
169 2elh_A CG11849-PA, LD40883P; s 49.2 8.6 0.0003 33.6 2.5 34 218-252 24-57 (87)
170 3vk0_A NHTF, transcriptional r 49.1 14 0.00049 33.4 4.1 55 219-273 20-75 (114)
171 2ct0_A Non-SMC element 1 homol 48.5 7.2 0.00025 33.9 1.8 47 705-754 15-61 (74)
172 2zkz_A Transcriptional repress 48.4 7 0.00024 34.8 1.8 32 223-254 31-62 (99)
173 2eli_A Protein kinase C alpha 48.0 11 0.00036 33.4 2.9 35 704-738 27-62 (85)
174 3g5g_A Regulatory protein; tra 47.8 15 0.0005 32.9 3.9 61 212-272 18-81 (99)
175 2heo_A Z-DNA binding protein 1 47.2 7.8 0.00027 32.5 1.8 32 223-254 14-46 (67)
176 1b0n_A Protein (SINR protein); 47.1 13 0.00045 32.8 3.4 52 221-272 2-55 (111)
177 2dbb_A Putative HTH-type trans 46.6 8 0.00027 36.7 2.0 37 217-254 8-44 (151)
178 3i4p_A Transcriptional regulat 46.3 7.1 0.00024 37.9 1.6 32 223-254 7-38 (162)
179 1r71_A Transcriptional repress 45.7 12 0.0004 37.7 3.1 51 217-268 37-87 (178)
180 3pfq_A PKC-B, PKC-beta, protei 45.2 8.1 0.00028 45.9 2.2 33 705-737 48-81 (674)
181 2lbm_A Transcriptional regulat 45.2 8.3 0.00029 37.7 1.9 29 828-859 64-92 (142)
182 2ct0_A Non-SMC element 1 homol 44.7 13 0.00043 32.4 2.8 34 824-859 12-45 (74)
183 3bd1_A CRO protein; transcript 44.5 12 0.00043 31.4 2.7 47 225-272 4-50 (79)
184 2cg4_A Regulatory protein ASNC 44.5 8.9 0.0003 36.5 2.0 32 223-254 12-43 (152)
185 1qgp_A Protein (double strande 44.3 9 0.00031 33.2 1.8 33 222-254 17-52 (77)
186 2cfx_A HTH-type transcriptiona 44.0 9.3 0.00032 36.1 2.0 32 223-254 9-40 (144)
187 2e1c_A Putative HTH-type trans 43.7 9.1 0.00031 37.7 2.0 36 218-254 27-62 (171)
188 3kv4_A PHD finger protein 8; e 43.3 6.1 0.00021 45.3 0.7 28 828-857 5-35 (447)
189 2ro1_A Transcription intermedi 43.2 6.6 0.00023 39.7 0.9 29 828-859 3-31 (189)
190 2cyy_A Putative HTH-type trans 43.0 9.7 0.00033 36.2 2.0 35 219-254 8-42 (151)
191 1rfh_A RAS association (ralgds 43.0 6.3 0.00022 32.5 0.6 33 704-738 21-53 (59)
192 2jn6_A Protein CGL2762, transp 42.7 12 0.0004 33.0 2.3 35 218-252 7-42 (97)
193 3shb_A E3 ubiquitin-protein li 42.7 8 0.00027 33.9 1.2 29 829-859 28-58 (77)
194 1y0u_A Arsenical resistance op 42.7 9.6 0.00033 33.5 1.8 31 222-254 34-64 (96)
195 2db6_A SH3 and cysteine rich d 42.2 4.7 0.00016 34.7 -0.3 35 704-738 27-62 (74)
196 3op9_A PLI0006 protein; struct 42.1 18 0.00061 32.5 3.5 56 217-272 6-62 (114)
197 1sfx_A Conserved hypothetical 41.9 11 0.00038 32.6 2.1 33 222-254 23-55 (109)
198 1ub9_A Hypothetical protein PH 41.7 9.7 0.00033 32.9 1.6 33 222-254 19-51 (100)
199 2w25_A Probable transcriptiona 41.6 11 0.00036 35.9 2.0 32 223-254 11-42 (150)
200 3kjx_A Transcriptional regulat 41.5 11 0.00038 39.9 2.4 52 231-282 8-60 (344)
201 1i1g_A Transcriptional regulat 41.5 11 0.00037 35.2 2.0 32 223-254 8-39 (141)
202 1kbe_A Kinase suppressor of RA 41.4 13 0.00043 30.0 2.1 29 706-737 15-43 (49)
203 1r79_A Diacylglycerol kinase, 41.2 12 0.00042 33.4 2.2 33 705-737 38-72 (84)
204 2p5v_A Transcriptional regulat 41.1 11 0.00037 36.4 2.0 32 223-254 14-45 (162)
205 2pn6_A ST1022, 150AA long hypo 40.9 9.7 0.00033 36.0 1.6 32 223-254 7-38 (150)
206 3qq6_A HTH-type transcriptiona 40.8 25 0.00086 29.6 4.1 54 219-272 9-64 (78)
207 3kv5_D JMJC domain-containing 40.6 7.1 0.00024 45.2 0.7 28 828-857 37-67 (488)
208 3pqk_A Biofilm growth-associat 40.4 11 0.00037 33.4 1.8 31 223-254 27-57 (102)
209 3f52_A CLP gene regulator (CLG 40.4 20 0.00068 32.3 3.6 56 219-274 27-83 (117)
210 1vyx_A ORF K3, K3RING; zinc-bi 40.1 2.6 8.9E-05 35.0 -2.2 50 703-754 4-56 (60)
211 1fse_A GERE; helix-turn-helix 40.1 17 0.00059 29.7 2.9 32 222-255 17-48 (74)
212 1neq_A DNA-binding protein NER 39.7 20 0.0007 30.6 3.3 47 222-271 12-58 (74)
213 2oqg_A Possible transcriptiona 39.2 12 0.00042 33.3 2.0 33 222-255 24-56 (114)
214 3ask_A E3 ubiquitin-protein li 39.2 8.8 0.0003 40.2 1.1 30 828-859 175-206 (226)
215 1y9q_A Transcriptional regulat 39.1 23 0.00077 34.7 4.0 55 219-273 10-65 (192)
216 1oyi_A Double-stranded RNA-bin 39.0 9 0.00031 34.1 1.0 32 222-254 20-51 (82)
217 1vz0_A PARB, chromosome partit 38.8 16 0.00054 38.0 2.9 50 217-267 119-168 (230)
218 3f6o_A Probable transcriptiona 37.1 19 0.00064 32.9 2.8 51 223-274 22-89 (118)
219 2d1h_A ST1889, 109AA long hypo 36.5 15 0.00053 31.8 2.1 33 222-254 24-57 (109)
220 1v5n_A PDI-like hypothetical p 36.2 15 0.0005 33.0 1.9 32 706-739 48-79 (89)
221 2ecm_A Ring finger and CHY zin 35.9 22 0.00075 27.5 2.7 48 704-753 4-51 (55)
222 1r1u_A CZRA, repressor protein 35.7 15 0.00052 32.8 1.9 32 222-254 29-60 (106)
223 3ivp_A Putative transposon-rel 34.8 30 0.001 31.6 3.9 56 217-272 9-65 (126)
224 2ia0_A Putative HTH-type trans 34.8 15 0.00052 36.0 2.0 37 217-254 16-52 (171)
225 2hsg_A Glucose-resistance amyl 33.1 19 0.00065 37.7 2.5 49 233-281 2-51 (332)
226 1rzs_A Antirepressor, regulato 32.7 26 0.00091 28.5 2.8 46 225-274 3-49 (61)
227 3eus_A DNA-binding protein; st 32.3 38 0.0013 28.9 3.9 53 220-272 14-67 (86)
228 1on2_A Transcriptional regulat 32.0 23 0.00078 32.8 2.6 26 230-255 19-44 (142)
229 2p5k_A Arginine repressor; DNA 31.9 25 0.00087 28.1 2.5 31 225-255 10-46 (64)
230 2jpc_A SSRB; DNA binding prote 31.8 21 0.00072 28.3 2.0 26 229-255 10-35 (61)
231 1weq_A PHD finger protein 7; s 31.5 30 0.001 31.0 3.1 35 719-754 44-79 (85)
232 3lsg_A Two-component response 31.4 21 0.00072 31.4 2.1 31 225-255 11-41 (103)
233 3nw0_A Non-structural maintena 31.2 20 0.00067 37.6 2.2 46 705-753 180-225 (238)
234 2l49_A C protein; P2 bacteriop 31.2 19 0.00066 31.2 1.8 36 220-255 4-39 (99)
235 3mlf_A Transcriptional regulat 31.1 29 0.00099 31.5 3.1 53 221-273 24-77 (111)
236 3ql9_A Transcriptional regulat 31.0 18 0.0006 34.9 1.6 30 828-860 58-87 (129)
237 2jsc_A Transcriptional regulat 30.6 23 0.0008 32.4 2.3 31 223-254 25-55 (118)
238 3lfp_A CSP231I C protein; tran 30.1 29 0.001 30.3 2.8 52 221-272 2-58 (98)
239 3kkc_A TETR family transcripti 30.0 19 0.00064 33.5 1.6 22 230-251 27-50 (177)
240 2x4h_A Hypothetical protein SS 30.0 28 0.00095 32.0 2.8 38 217-254 11-52 (139)
241 1hlv_A CENP-B, major centromer 29.7 36 0.0012 31.1 3.5 58 218-275 9-89 (131)
242 2hzt_A Putative HTH-type trans 29.7 21 0.00073 32.0 1.9 32 222-254 17-49 (107)
243 4a5n_A Uncharacterized HTH-typ 29.6 21 0.00073 34.0 1.9 33 222-255 29-62 (131)
244 2k27_A Paired box protein PAX- 29.4 96 0.0033 29.3 6.6 37 218-255 27-63 (159)
245 1weo_A Cellulose synthase, cat 29.3 8.9 0.00031 34.8 -0.7 50 704-754 15-67 (93)
246 3bpv_A Transcriptional regulat 29.2 23 0.00078 32.1 2.0 33 222-254 32-64 (138)
247 3qkx_A Uncharacterized HTH-typ 29.0 27 0.00092 32.5 2.5 30 225-254 18-49 (188)
248 1dw9_A Cyanate lyase; cyanate 28.7 49 0.0017 32.8 4.4 60 221-280 14-84 (156)
249 2p7v_B Sigma-70, RNA polymeras 28.6 28 0.00096 28.5 2.3 33 233-275 25-57 (68)
250 1v4r_A Transcriptional repress 28.6 26 0.00089 31.1 2.2 39 217-255 12-57 (102)
251 2nnn_A Probable transcriptiona 28.5 25 0.00085 31.8 2.1 33 222-254 41-73 (140)
252 3r0a_A Putative transcriptiona 27.9 25 0.00086 32.5 2.1 33 222-254 29-63 (123)
253 2ofy_A Putative XRE-family tra 27.7 47 0.0016 27.9 3.6 51 220-272 16-68 (86)
254 3h5t_A Transcriptional regulat 27.7 23 0.00079 37.7 2.0 50 231-280 7-58 (366)
255 3f1b_A TETR-like transcription 27.7 30 0.001 32.6 2.6 30 225-254 24-55 (203)
256 1z7u_A Hypothetical protein EF 27.6 27 0.00093 31.6 2.2 32 222-254 25-57 (112)
257 3bdd_A Regulatory protein MARR 27.5 26 0.00088 31.8 2.1 33 222-254 34-66 (142)
258 3ulq_B Transcriptional regulat 27.5 25 0.00085 31.1 1.9 32 222-255 35-66 (90)
259 2ku7_A MLL1 PHD3-CYP33 RRM chi 27.4 13 0.00044 34.2 0.0 34 721-754 2-44 (140)
260 2row_A RHO-associated protein 27.4 19 0.00066 32.1 1.1 33 705-737 35-70 (84)
261 3rd3_A Probable transcriptiona 27.3 30 0.001 32.4 2.6 30 224-253 19-50 (197)
262 2bnm_A Epoxidase; oxidoreducta 27.2 45 0.0015 32.6 3.9 54 219-272 9-64 (198)
263 2ect_A Ring finger protein 126 27.1 54 0.0018 27.3 3.9 50 703-755 13-62 (78)
264 1pdn_C Protein (PRD paired); p 27.0 32 0.0011 30.6 2.6 34 218-252 19-52 (128)
265 2fu4_A Ferric uptake regulatio 27.0 24 0.00084 29.9 1.7 35 220-254 18-59 (83)
266 1u8b_A ADA polyprotein; protei 27.0 19 0.00063 33.5 1.0 31 225-255 84-115 (133)
267 3b73_A PHIH1 repressor-like pr 26.9 26 0.0009 32.5 2.0 33 222-254 16-50 (111)
268 2rn7_A IS629 ORFA; helix, all 26.8 20 0.0007 31.9 1.2 34 218-251 8-48 (108)
269 3bja_A Transcriptional regulat 26.5 22 0.00076 32.1 1.4 33 222-254 36-68 (139)
270 3a1b_A DNA (cytosine-5)-methyl 26.4 16 0.00056 36.3 0.5 46 704-753 78-133 (159)
271 2lkp_A Transcriptional regulat 26.4 28 0.00095 31.4 2.1 33 222-255 35-67 (119)
272 2vrw_B P95VAV, VAV1, proto-onc 26.3 40 0.0014 37.2 3.7 36 702-737 354-390 (406)
273 3fmy_A HTH-type transcriptiona 26.1 55 0.0019 27.1 3.7 52 222-274 13-65 (73)
274 3jvd_A Transcriptional regulat 26.0 14 0.00049 39.1 0.0 51 231-281 4-55 (333)
275 2a61_A Transcriptional regulat 26.0 28 0.00097 31.7 2.1 33 222-254 36-68 (145)
276 3lwj_A Putative TETR-family tr 25.9 33 0.0011 32.4 2.6 9 602-610 138-146 (202)
277 2l0b_A E3 ubiquitin-protein li 25.8 30 0.001 30.3 2.0 49 703-754 38-86 (91)
278 3dew_A Transcriptional regulat 25.7 33 0.0011 32.2 2.5 10 601-610 133-142 (206)
279 2fbi_A Probable transcriptiona 25.6 27 0.00093 31.7 1.8 33 222-254 39-71 (142)
280 1lj9_A Transcriptional regulat 25.5 28 0.00095 31.8 1.9 33 222-254 32-64 (144)
281 3b81_A Transcriptional regulat 25.5 34 0.0011 32.3 2.6 30 225-254 21-52 (203)
282 2ek5_A Predicted transcription 25.5 35 0.0012 32.1 2.6 37 219-255 7-50 (129)
283 3tqn_A Transcriptional regulat 25.5 35 0.0012 31.1 2.5 38 218-255 11-55 (113)
284 2o38_A Hypothetical protein; a 25.4 53 0.0018 30.4 3.8 54 219-272 39-94 (120)
285 1j9i_A GPNU1 DBD;, terminase s 25.4 37 0.0013 28.1 2.5 44 233-276 2-55 (68)
286 3nrv_A Putative transcriptiona 25.3 30 0.001 31.9 2.1 33 222-254 43-75 (148)
287 3by6_A Predicted transcription 25.2 36 0.0012 31.8 2.6 38 218-255 13-57 (126)
288 3df8_A Possible HXLR family tr 25.0 28 0.00096 31.7 1.8 33 222-255 30-65 (111)
289 3dcf_A Transcriptional regulat 24.9 35 0.0012 32.5 2.6 31 224-254 40-72 (218)
290 3col_A Putative transcription 24.8 35 0.0012 31.8 2.5 28 226-253 21-50 (196)
291 3bj6_A Transcriptional regulat 24.7 28 0.00095 32.1 1.7 33 222-254 43-75 (152)
292 2f2e_A PA1607; transcription f 24.6 31 0.0011 32.9 2.1 33 222-255 27-59 (146)
293 1r1t_A Transcriptional repress 24.6 27 0.00094 32.3 1.7 31 223-254 50-80 (122)
294 1j5y_A Transcriptional regulat 24.5 30 0.001 34.3 2.1 34 221-254 23-57 (187)
295 1pb6_A Hypothetical transcript 24.5 37 0.0012 32.3 2.6 26 228-253 31-58 (212)
296 3tgn_A ADC operon repressor AD 24.4 26 0.0009 32.1 1.5 32 222-254 41-72 (146)
297 3mzy_A RNA polymerase sigma-H 24.4 37 0.0013 31.3 2.6 30 223-254 116-145 (164)
298 3kp7_A Transcriptional regulat 24.3 27 0.00093 32.4 1.6 32 222-254 41-72 (151)
299 2o8x_A Probable RNA polymerase 24.2 48 0.0016 26.6 2.9 22 233-254 31-52 (70)
300 3ky9_A Proto-oncogene VAV; cal 24.2 45 0.0015 38.9 3.7 36 703-738 527-563 (587)
301 1s3j_A YUSO protein; structura 24.0 28 0.00094 32.3 1.6 33 222-254 40-72 (155)
302 2ku7_A MLL1 PHD3-CYP33 RRM chi 23.8 18 0.00062 33.2 0.3 16 840-857 2-17 (140)
303 3neu_A LIN1836 protein; struct 23.8 39 0.0013 31.4 2.6 39 217-255 14-59 (125)
304 1v5n_A PDI-like hypothetical p 23.6 39 0.0013 30.1 2.4 60 21-88 18-78 (89)
305 3ech_A MEXR, multidrug resista 23.6 29 0.001 31.8 1.7 33 222-254 40-72 (142)
306 2pg4_A Uncharacterized protein 23.6 42 0.0014 29.1 2.6 33 222-254 18-52 (95)
307 2iu5_A DHAS, YCEG, HTH-type dh 23.6 39 0.0013 32.1 2.6 27 228-254 26-54 (195)
308 3kxa_A NGO0477 protein, putati 23.5 47 0.0016 31.6 3.1 49 224-272 72-121 (141)
309 2bv6_A MGRA, HTH-type transcri 23.4 27 0.00093 31.9 1.4 33 222-254 40-72 (142)
310 1bia_A BIRA bifunctional prote 23.3 37 0.0013 36.7 2.6 34 221-254 7-40 (321)
311 3h5o_A Transcriptional regulat 23.3 17 0.00059 38.3 0.0 49 232-280 3-52 (339)
312 3ppb_A Putative TETR family tr 23.2 40 0.0014 31.3 2.6 27 228-254 22-50 (195)
313 1sgm_A Putative HTH-type trans 23.1 35 0.0012 31.7 2.2 28 226-253 17-46 (191)
314 2o20_A Catabolite control prot 23.1 17 0.0006 38.1 0.0 49 232-280 4-53 (332)
315 2pex_A Transcriptional regulat 23.1 31 0.0011 32.0 1.8 34 221-254 49-82 (153)
316 2fa5_A Transcriptional regulat 23.1 34 0.0011 32.0 2.0 33 222-254 52-84 (162)
317 2eth_A Transcriptional regulat 23.1 35 0.0012 31.8 2.1 33 222-254 47-79 (154)
318 1u78_A TC3 transposase, transp 23.0 52 0.0018 30.0 3.3 36 218-254 8-43 (141)
319 1zk8_A Transcriptional regulat 22.9 40 0.0014 31.4 2.5 25 228-252 21-47 (183)
320 1jgs_A Multiple antibiotic res 22.9 40 0.0014 30.5 2.4 33 222-254 37-69 (138)
321 3bil_A Probable LACI-family tr 22.7 18 0.00062 38.5 0.0 50 231-280 6-56 (348)
322 1qpz_A PURA, protein (purine n 22.6 34 0.0012 36.0 2.1 48 234-281 1-49 (340)
323 2nyx_A Probable transcriptiona 22.5 33 0.0011 32.7 1.8 33 222-254 48-80 (168)
324 2fsw_A PG_0823 protein; alpha- 22.3 33 0.0011 30.7 1.7 32 222-254 28-60 (107)
325 3e7q_A Transcriptional regulat 22.3 32 0.0011 32.6 1.7 19 233-251 34-52 (215)
326 2hr3_A Probable transcriptiona 22.2 38 0.0013 31.0 2.2 33 222-254 38-71 (147)
327 2qww_A Transcriptional regulat 22.2 33 0.0011 31.8 1.7 33 222-254 44-76 (154)
328 2rdp_A Putative transcriptiona 22.1 37 0.0013 31.2 2.1 33 222-254 45-77 (150)
329 2h09_A Transcriptional regulat 22.1 43 0.0015 31.5 2.6 31 225-255 45-76 (155)
330 2g7g_A RHA04620, putative tran 22.1 43 0.0015 33.1 2.6 30 225-254 21-50 (213)
331 3cjn_A Transcriptional regulat 22.0 34 0.0011 32.1 1.8 33 222-254 55-87 (162)
332 3he0_A Transcriptional regulat 22.0 44 0.0015 31.3 2.6 30 225-254 21-52 (196)
333 2fbh_A Transcriptional regulat 21.9 34 0.0012 31.1 1.7 33 222-254 40-73 (146)
334 3mvp_A TETR/ACRR transcription 21.9 42 0.0015 31.9 2.5 31 224-254 35-67 (217)
335 1z91_A Organic hydroperoxide r 21.8 32 0.0011 31.5 1.6 34 221-254 42-75 (147)
336 3knw_A Putative transcriptiona 21.7 44 0.0015 31.7 2.6 25 228-252 27-53 (212)
337 2qtq_A Transcriptional regulat 21.7 44 0.0015 31.7 2.6 26 227-252 28-55 (213)
338 3kz9_A SMCR; transcriptional r 21.7 44 0.0015 31.4 2.6 28 226-253 28-57 (206)
339 1je8_A Nitrate/nitrite respons 21.5 41 0.0014 28.8 2.1 31 223-255 28-58 (82)
340 3qbm_A TETR transcriptional re 21.5 45 0.0015 31.2 2.6 26 227-252 19-46 (199)
341 2k9s_A Arabinose operon regula 21.5 49 0.0017 29.3 2.7 24 232-255 19-42 (107)
342 2yqk_A Arginine-glutamic acid 21.4 62 0.0021 27.0 3.0 42 541-587 8-51 (63)
343 3q0w_A HTH-type transcriptiona 21.4 43 0.0015 33.1 2.5 32 223-254 52-85 (236)
344 4hbl_A Transcriptional regulat 21.4 38 0.0013 31.4 2.0 33 222-254 44-76 (149)
345 3sqn_A Conserved domain protei 21.3 48 0.0016 38.0 3.2 34 221-254 20-53 (485)
346 2v7f_A RPS19, RPS19E SSU ribos 21.3 32 0.0011 33.7 1.5 36 220-255 54-103 (150)
347 2ep4_A Ring finger protein 24; 21.2 52 0.0018 27.1 2.6 48 704-754 14-61 (74)
348 3lhq_A Acrab operon repressor 21.2 46 0.0016 31.6 2.6 12 235-246 36-47 (220)
349 3to7_A Histone acetyltransfera 21.2 36 0.0012 36.6 1.9 44 212-255 179-230 (276)
350 1tty_A Sigma-A, RNA polymerase 21.2 53 0.0018 28.3 2.7 32 233-274 38-69 (87)
351 3f0c_A TETR-molecule A, transc 21.1 46 0.0016 31.8 2.6 27 226-252 22-50 (216)
352 2nsa_A Trigger factor, TF; cha 21.1 47 0.0016 32.1 2.7 57 219-275 92-163 (170)
353 2cw1_A SN4M; lambda CRO fold, 21.1 37 0.0013 28.7 1.6 27 224-252 6-32 (65)
354 3dbi_A Sugar-binding transcrip 20.9 21 0.0007 37.6 0.0 48 233-280 3-51 (338)
355 2zb9_A Putative transcriptiona 20.8 46 0.0016 32.0 2.5 18 233-250 43-60 (214)
356 3him_A Probable transcriptiona 20.8 41 0.0014 31.8 2.1 17 233-249 36-52 (211)
357 3oop_A LIN2960 protein; protei 20.8 38 0.0013 31.0 1.8 33 222-254 40-72 (143)
358 2gxg_A 146AA long hypothetical 20.8 38 0.0013 30.9 1.8 32 222-254 40-71 (146)
359 2g7s_A Transcriptional regulat 20.8 47 0.0016 30.8 2.5 18 233-250 28-45 (194)
360 3nrg_A TETR family transcripti 20.8 45 0.0015 31.8 2.4 30 225-254 23-54 (217)
361 3g3z_A NMB1585, transcriptiona 20.7 42 0.0014 30.8 2.1 34 221-254 33-66 (145)
362 3k0l_A Repressor protein; heli 20.5 44 0.0015 31.4 2.3 33 222-254 49-81 (162)
363 2wus_R RODZ, putative uncharac 20.5 53 0.0018 30.2 2.7 36 220-255 7-42 (112)
364 2qwt_A Transcriptional regulat 20.5 50 0.0017 31.6 2.6 7 604-610 136-142 (196)
365 3on2_A Probable transcriptiona 20.3 39 0.0013 31.6 1.8 14 234-247 33-46 (199)
366 3on4_A Transcriptional regulat 20.3 49 0.0017 30.7 2.5 25 228-252 23-49 (191)
367 3cdh_A Transcriptional regulat 20.3 34 0.0012 31.8 1.4 33 222-254 46-78 (155)
No 1
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}
Probab=99.58 E-value=7.1e-16 Score=139.44 Aligned_cols=71 Identities=30% Similarity=0.551 Sum_probs=60.0
Q ss_pred cCchhhcccccccccccc-cCceeeCCCCCCCcccchhhhhhcCceEEeccc------cCCccceeeecCCCCCCCCC
Q 002388 48 GGIKETRMKLVCNICRVK-CGACVRCSHGTCRTSFHPICAREARHRLEVWGK------YGCNNVELRAFCAKHSDIQD 118 (929)
Q Consensus 48 ~~I~~~R~~LkC~iC~~k-~GAcIqCs~~~C~~~FHvtCA~~aG~~~e~~~~------~g~~~v~~~~fC~~Hr~~~~ 118 (929)
-+||++||+|+|+||+++ .||||||+.++|.++||++||+++|++|++... .....+.+.+||++|+|...
T Consensus 9 ~NIp~~R~~l~C~iC~~~~~GAciqC~~~~C~~~fHv~CA~~aGl~~~~~~~~~~~~~~~~~~v~~~~yC~~HsPpg~ 86 (87)
T 2lq6_A 9 MNIPPARWKLTCYLCKQKGVGASIQCHKANCYTAFHVTCAQKAGLYMKMEPVKELTGGGTTFSVRKTAYCDVHTPPGS 86 (87)
T ss_dssp CCCCCCCCCCCBTTTTBCCSSCEEECSCTTTCCEEEHHHHHHHTCCEEEEEEEECTTTSCEEEEEEEECCGGGSSSSC
T ss_pred cCCChHHhcCCCcCCCCCCCcEeEecCCCCCCCcCcHHHHHHCCCceEeecccccccCCccccceECeECcCCCCcCC
Confidence 368999999999999987 599999999999999999999999999987531 11233568999999999754
No 2
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}
Probab=99.20 E-value=5.6e-12 Score=113.96 Aligned_cols=65 Identities=34% Similarity=0.768 Sum_probs=54.0
Q ss_pred cccCC--CCcceeCCCC-CCceeecCCcCcccccchhhhhhcCceEEEeeC--------CCcceeeeccccccchh
Q 002388 822 AFPKG--IDVCCICRHK-HGICIKCNYGNCQTTFHPTCARSAGFYLNVKST--------GGNFQHKAYCEKHSLEQ 886 (929)
Q Consensus 822 ~I~k~--k~~C~iC~~~-~GacIqC~~~~C~~~FH~~CA~~aGl~~~~k~~--------~g~~~~~ayC~kHs~~q 886 (929)
+|++. +++|+||+++ .|++|+|..++|.++||++||+.+|++|+++.. .+.+++.+||++|+|..
T Consensus 10 NIp~~R~~l~C~iC~~~~~GAciqC~~~~C~~~fHv~CA~~aGl~~~~~~~~~~~~~~~~~~v~~~~yC~~HsPpg 85 (87)
T 2lq6_A 10 NIPPARWKLTCYLCKQKGVGASIQCHKANCYTAFHVTCAQKAGLYMKMEPVKELTGGGTTFSVRKTAYCDVHTPPG 85 (87)
T ss_dssp CCCCCCCCCCBTTTTBCCSSCEEECSCTTTCCEEEHHHHHHHTCCEEEEEEEECTTTSCEEEEEEEECCGGGSSSS
T ss_pred CCChHHhcCCCcCCCCCCCcEeEecCCCCCCCcCcHHHHHHCCCceEeecccccccCCccccceECeECcCCCCcC
Confidence 45554 6999999987 599999999999999999999999999987532 12346889999999864
No 3
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=98.81 E-value=1.4e-09 Score=94.85 Aligned_cols=56 Identities=32% Similarity=0.685 Sum_probs=48.9
Q ss_pred CCCCCCCcCcccCCCCC-CCCCEEEecccCcccccccccCccCCCCceecccccccc
Q 002388 700 FSKEHPRSCDICRRSET-ILNPILICSGCKVAVHLDCYRNAKESTGPWYCELCEELL 755 (929)
Q Consensus 700 ~ske~d~~CsVC~~~E~-~~N~Ll~Cd~C~vaVHq~CYGi~~~p~g~WlCd~C~~~~ 755 (929)
+...++..|.||.+.++ ..|.||.|++|..+||+.|||++.+|+++|+|..|....
T Consensus 11 ~~~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~~~ 67 (71)
T 2ku3_A 11 SLIDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSR 67 (71)
T ss_dssp CCCCSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHHHH
T ss_pred cCCCCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcCcC
Confidence 34566789999998763 578999999999999999999998999999999998753
No 4
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=98.64 E-value=1.1e-08 Score=92.61 Aligned_cols=53 Identities=34% Similarity=0.768 Sum_probs=47.3
Q ss_pred CCCCCcCcccCCCCC-CCCCEEEecccCcccccccccCccCCCCceeccccccc
Q 002388 702 KEHPRSCDICRRSET-ILNPILICSGCKVAVHLDCYRNAKESTGPWYCELCEEL 754 (929)
Q Consensus 702 ke~d~~CsVC~~~E~-~~N~Ll~Cd~C~vaVHq~CYGi~~~p~g~WlCd~C~~~ 754 (929)
.+++..|.||.+.++ ..|.||+|++|..+||+.|||++.+|++.|+|..|...
T Consensus 22 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~ 75 (88)
T 2l43_A 22 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQS 75 (88)
T ss_dssp CCCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHH
T ss_pred CCCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCc
Confidence 456789999998763 46899999999999999999999899999999999876
No 5
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=98.46 E-value=4.4e-08 Score=88.61 Aligned_cols=58 Identities=26% Similarity=0.654 Sum_probs=48.0
Q ss_pred CCCCCCCcCcccCCCCC-CCCCEEEecccCcccccccccCc------cCCCCceecccccccccC
Q 002388 700 FSKEHPRSCDICRRSET-ILNPILICSGCKVAVHLDCYRNA------KESTGPWYCELCEELLSS 757 (929)
Q Consensus 700 ~ske~d~~CsVC~~~E~-~~N~Ll~Cd~C~vaVHq~CYGi~------~~p~g~WlCd~C~~~~~~ 757 (929)
+..+++..|.||...+. ..|.||+|++|..+||+.||+.+ .+|.+.|+|..|......
T Consensus 11 ~~~e~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~~ 75 (88)
T 1wev_A 11 FAMEMGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKR 75 (88)
T ss_dssp CHHHHCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHCC
T ss_pred ccCCCCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhhh
Confidence 33456789999998764 36899999999999999999965 268999999999886543
No 6
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=98.44 E-value=1e-07 Score=81.18 Aligned_cols=52 Identities=25% Similarity=0.551 Sum_probs=44.1
Q ss_pred CCCCcCcccCCCCC-CCCCEEEecccCcccccccccCcc----C-CCCceeccccccc
Q 002388 703 EHPRSCDICRRSET-ILNPILICSGCKVAVHLDCYRNAK----E-STGPWYCELCEEL 754 (929)
Q Consensus 703 e~d~~CsVC~~~E~-~~N~Ll~Cd~C~vaVHq~CYGi~~----~-p~g~WlCd~C~~~ 754 (929)
.++..|.||...+. ..+.||+|++|..+||+.||+++. + |.+.|+|..|...
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~ 61 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFA 61 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCc
Confidence 45688999998753 468999999999999999999753 3 7899999999875
No 7
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=98.36 E-value=4.9e-07 Score=84.69 Aligned_cols=77 Identities=26% Similarity=0.464 Sum_probs=62.2
Q ss_pred CCCCCcCcccCCCCCCCCCEEEec--ccCcccccccccCccCCCCceecccccccccCCCCCCCCCCccCCCcccccccc
Q 002388 702 KEHPRSCDICRRSETILNPILICS--GCKVAVHLDCYRNAKESTGPWYCELCEELLSSRSSGAPSVNFWEKPYFVAECSL 779 (929)
Q Consensus 702 ke~d~~CsVC~~~E~~~N~Ll~Cd--~C~vaVHq~CYGi~~~p~g~WlCd~C~~~~~~~~s~~~~~~~~~~p~~~~~C~L 779 (929)
.+++..|.||.+ +++||.|+ .|...+|..|+++..+|.|.|+|..|.-..-.+. ..+.|.+
T Consensus 12 ~~~~~~C~~C~~----~G~ll~CD~~~Cp~~fH~~Cl~L~~~P~g~W~Cp~c~C~~C~k~-------------~~~~C~~ 74 (107)
T 4gne_A 12 QMHEDYCFQCGD----GGELVMCDKKDCPKAYHLLCLNLTQPPYGKWECPWHQCDECSSA-------------AVSFCEF 74 (107)
T ss_dssp CSSCSSCTTTCC----CSEEEECCSTTCCCEECTGGGTCSSCCSSCCCCGGGBCTTTCSB-------------CCEECSS
T ss_pred CCCCCCCCcCCC----CCcEeEECCCCCCcccccccCcCCcCCCCCEECCCCCCCcCCCC-------------CCcCcCC
Confidence 346688999995 57899999 8999999999999889999999998865422111 1578999
Q ss_pred CCC------CCCceeeccCcch
Q 002388 780 CGG------TTGAFRKSANGQW 795 (929)
Q Consensus 780 Cp~------~gGaLK~T~~g~W 795 (929)
||. ..|+|+.+....|
T Consensus 75 Cp~sfC~~c~~g~l~~~~~~~~ 96 (107)
T 4gne_A 75 CPHSFCKDHEKGALVPSALEGR 96 (107)
T ss_dssp SSCEECTTTCTTSCEECTTTTC
T ss_pred CCcchhhhccCCcceecCCCCc
Confidence 995 5688988887777
No 8
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=98.27 E-value=5.5e-07 Score=77.13 Aligned_cols=53 Identities=26% Similarity=0.752 Sum_probs=44.9
Q ss_pred CCCCCCCcCcccCCCCCCCCCEEEecccCccccccccc--CccCCCCceeccccccccc
Q 002388 700 FSKEHPRSCDICRRSETILNPILICSGCKVAVHLDCYR--NAKESTGPWYCELCEELLS 756 (929)
Q Consensus 700 ~ske~d~~CsVC~~~E~~~N~Ll~Cd~C~vaVHq~CYG--i~~~p~g~WlCd~C~~~~~ 756 (929)
.+..++..|.||.+ .+.||.|++|...||..|++ +..+|.+.|+|..|.....
T Consensus 3 ~~~~~~~~C~vC~~----~g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~~~ 57 (66)
T 1xwh_A 3 MAQKNEDECAVCRD----GGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQATV 57 (66)
T ss_dssp CCCSCCCSBSSSSC----CSSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHTCC
T ss_pred cCCCCCCCCccCCC----CCCEEEcCCCChhhcccccCCCcCcCCCCCeECccccCccc
Confidence 34567789999997 46899999999999999999 5567899999999987543
No 9
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.21 E-value=6.7e-07 Score=74.15 Aligned_cols=50 Identities=32% Similarity=0.816 Sum_probs=43.0
Q ss_pred CCCCCCCcCcccCCCCCCCCCEEEecccCccccccccc--CccCCCCceecccccc
Q 002388 700 FSKEHPRSCDICRRSETILNPILICSGCKVAVHLDCYR--NAKESTGPWYCELCEE 753 (929)
Q Consensus 700 ~ske~d~~CsVC~~~E~~~N~Ll~Cd~C~vaVHq~CYG--i~~~p~g~WlCd~C~~ 753 (929)
....++..|.||.+ .+.||.|+.|...+|..|++ +..+|.+.|+|..|..
T Consensus 4 g~~~~~~~C~vC~~----~g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 4 GSSGHEDFCSVCRK----SGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp CCCSSCCSCSSSCC----SSCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CcCCCCCCCccCCC----CCeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 44567789999998 46899999999999999999 5567899999999964
No 10
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=98.17 E-value=8.5e-07 Score=74.89 Aligned_cols=49 Identities=24% Similarity=0.716 Sum_probs=42.4
Q ss_pred CCCCCcCcccCCCCCCCCCEEEecccCccccccccc--CccCCCCceeccccccc
Q 002388 702 KEHPRSCDICRRSETILNPILICSGCKVAVHLDCYR--NAKESTGPWYCELCEEL 754 (929)
Q Consensus 702 ke~d~~CsVC~~~E~~~N~Ll~Cd~C~vaVHq~CYG--i~~~p~g~WlCd~C~~~ 754 (929)
..++..|.||.+ .+.||.|+.|..++|..|++ +..+|.+.|+|..|...
T Consensus 6 d~~~~~C~vC~~----~g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 6 DHHMEFCRVCKD----GGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp CSSCSSCTTTCC----CSSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred cCCCCcCCCCCC----CCCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 456788999987 57899999999999999999 45678999999999764
No 11
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=98.16 E-value=7.9e-07 Score=72.11 Aligned_cols=46 Identities=30% Similarity=0.873 Sum_probs=40.0
Q ss_pred cCcccCCCCCCCCCEEEecccCccccccccc--CccCCCCceecccccc
Q 002388 707 SCDICRRSETILNPILICSGCKVAVHLDCYR--NAKESTGPWYCELCEE 753 (929)
Q Consensus 707 ~CsVC~~~E~~~N~Ll~Cd~C~vaVHq~CYG--i~~~p~g~WlCd~C~~ 753 (929)
.|.||...+. .+.||.|++|...+|..|++ +..+|.++|+|..|..
T Consensus 2 ~C~vC~~~~~-~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGE-DDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSC-CSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCC-CCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 5999998653 57899999999999999994 5677899999999975
No 12
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=98.12 E-value=1.7e-06 Score=73.02 Aligned_cols=51 Identities=29% Similarity=0.851 Sum_probs=43.7
Q ss_pred CCCCCCCcCcccCCCCCCCCCEEEecccCcccccccccC--ccCCCCceeccccccc
Q 002388 700 FSKEHPRSCDICRRSETILNPILICSGCKVAVHLDCYRN--AKESTGPWYCELCEEL 754 (929)
Q Consensus 700 ~ske~d~~CsVC~~~E~~~N~Ll~Cd~C~vaVHq~CYGi--~~~p~g~WlCd~C~~~ 754 (929)
...+++..|.||.+ .+.||.|+.|...+|..|++. ..+|.+.|+|..|...
T Consensus 6 ~~~~~~~~C~vC~~----~g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 6 YETDHQDYCEVCQQ----GGEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp CSSCCCSSCTTTSC----CSSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred ccCCCCCCCccCCC----CCcEEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 44566789999998 478999999999999999997 3578999999999764
No 13
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=98.09 E-value=2.7e-06 Score=77.01 Aligned_cols=52 Identities=25% Similarity=0.738 Sum_probs=45.0
Q ss_pred CCCCCCCCcCcccCCCCCCCCCEEEecccCcccccccc--cCccCCCCceeccccccc
Q 002388 699 DFSKEHPRSCDICRRSETILNPILICSGCKVAVHLDCY--RNAKESTGPWYCELCEEL 754 (929)
Q Consensus 699 ~~ske~d~~CsVC~~~E~~~N~Ll~Cd~C~vaVHq~CY--Gi~~~p~g~WlCd~C~~~ 754 (929)
....+++..|.||.+ ++.||.|+.|..++|..|+ +...+|.++|+|..|...
T Consensus 19 ~~~d~n~~~C~vC~~----~g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 19 GTLDDSATICRVCQK----PGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp CSSSSSSSCCSSSCS----SSCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred cccCCCCCcCcCcCC----CCCEEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 355677889999998 4679999999999999999 566788999999999865
No 14
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=98.08 E-value=1.4e-06 Score=73.07 Aligned_cols=47 Identities=32% Similarity=0.882 Sum_probs=41.6
Q ss_pred CCCcCcccCCCCCCCCCEEEecccCccccccccc--CccCCCCceeccccccc
Q 002388 704 HPRSCDICRRSETILNPILICSGCKVAVHLDCYR--NAKESTGPWYCELCEEL 754 (929)
Q Consensus 704 ~d~~CsVC~~~E~~~N~Ll~Cd~C~vaVHq~CYG--i~~~p~g~WlCd~C~~~ 754 (929)
++..|.||.+ .+.||.|++|...+|..|++ +..+|.+.|+|..|...
T Consensus 4 ~~~~C~vC~~----~g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 52 (60)
T 2puy_A 4 HEDFCSVCRK----SGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQ 52 (60)
T ss_dssp CCSSCTTTCC----CSSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHH
T ss_pred CCCCCcCCCC----CCcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccCh
Confidence 5688999998 47899999999999999999 55678999999999765
No 15
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=98.04 E-value=2.6e-06 Score=73.26 Aligned_cols=46 Identities=22% Similarity=0.517 Sum_probs=39.7
Q ss_pred CCcCcccCCCCCCCCCEEEecccCccccccccc--CccCCCCceeccccccc
Q 002388 705 PRSCDICRRSETILNPILICSGCKVAVHLDCYR--NAKESTGPWYCELCEEL 754 (929)
Q Consensus 705 d~~CsVC~~~E~~~N~Ll~Cd~C~vaVHq~CYG--i~~~p~g~WlCd~C~~~ 754 (929)
...|.||.+ ++.||.|+.|...||..|+. +..+|.+.|+|..|...
T Consensus 12 ~~~C~vC~~----~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 12 GARCGVCGD----GTDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp TCCCTTTSC----CTTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCCcCCCCC----CCeEEECCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence 467999986 46799999999999999996 44678999999999765
No 16
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.00 E-value=2.1e-06 Score=78.20 Aligned_cols=52 Identities=25% Similarity=0.623 Sum_probs=44.3
Q ss_pred CCCCCcCcccCCCCCCCCCEEEecccCccccccccc--CccCCCCceeccccccc
Q 002388 702 KEHPRSCDICRRSETILNPILICSGCKVAVHLDCYR--NAKESTGPWYCELCEEL 754 (929)
Q Consensus 702 ke~d~~CsVC~~~E~~~N~Ll~Cd~C~vaVHq~CYG--i~~~p~g~WlCd~C~~~ 754 (929)
..++..|.||..... .+.||.|++|...+|..|++ +..+|.++|+|..|...
T Consensus 13 ~~~~~~C~vC~~~~~-~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 13 FIDSYICQVCSRGDE-DDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCCCSSSCCSGG-GGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred ccCCCCCccCCCcCC-CCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 455678999998653 57899999999999999999 55678999999999764
No 17
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=97.86 E-value=6.8e-06 Score=77.47 Aligned_cols=47 Identities=23% Similarity=0.589 Sum_probs=38.3
Q ss_pred CcCcccCCCCC------CCCCEEEecccCcccccccccCc-----cCCCCceeccccc
Q 002388 706 RSCDICRRSET------ILNPILICSGCKVAVHLDCYRNA-----KESTGPWYCELCE 752 (929)
Q Consensus 706 ~~CsVC~~~E~------~~N~Ll~Cd~C~vaVHq~CYGi~-----~~p~g~WlCd~C~ 752 (929)
..|.+|...+. ..++||.|+.|..++|..|.+.. .++.+.|+|..|+
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 59 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIECK 59 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCHHHHHHHHHTTCCCGGGC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCChhhhhhccCCCccCccccC
Confidence 46999997651 24689999999999999999875 3567899999883
No 18
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=97.85 E-value=7.6e-06 Score=76.85 Aligned_cols=47 Identities=19% Similarity=0.593 Sum_probs=38.5
Q ss_pred CcCcccCCCCC-----CCCCEEEecccCcccccccccCc-----cCCCCceeccccc
Q 002388 706 RSCDICRRSET-----ILNPILICSGCKVAVHLDCYRNA-----KESTGPWYCELCE 752 (929)
Q Consensus 706 ~~CsVC~~~E~-----~~N~Ll~Cd~C~vaVHq~CYGi~-----~~p~g~WlCd~C~ 752 (929)
..|.+|...+. ..++||.|++|...+|..|++.. .++.+.|+|..|+
T Consensus 6 ~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 62 (112)
T 3v43_A 6 PICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECK 62 (112)
T ss_dssp SSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTC
T ss_pred ccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCC
Confidence 66999997642 24689999999999999999863 3468899999994
No 19
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.80 E-value=1.3e-05 Score=70.94 Aligned_cols=47 Identities=34% Similarity=0.795 Sum_probs=40.4
Q ss_pred CcCcccCCCCCCCCCEEEecccCccccccccc--CccCCCC-ceecccccc
Q 002388 706 RSCDICRRSETILNPILICSGCKVAVHLDCYR--NAKESTG-PWYCELCEE 753 (929)
Q Consensus 706 ~~CsVC~~~E~~~N~Ll~Cd~C~vaVHq~CYG--i~~~p~g-~WlCd~C~~ 753 (929)
-.|.||...+. .+.||.|++|..++|..|++ +..+|.+ +|+|..|..
T Consensus 27 c~C~vC~~~~~-~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 27 CSCRVCGGKHE-PNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSCSSSCCCCC-STTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCcCcCCcCC-CCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 37999998653 68999999999999999999 5567888 999999964
No 20
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=97.79 E-value=2.3e-05 Score=73.15 Aligned_cols=77 Identities=21% Similarity=0.504 Sum_probs=57.4
Q ss_pred CCCCCcCcccCCCCCCCCCEEEecccCcccccccccCccC--CCCceecccccccccCCCCCCCCCCccCCCcccccccc
Q 002388 702 KEHPRSCDICRRSETILNPILICSGCKVAVHLDCYRNAKE--STGPWYCELCEELLSSRSSGAPSVNFWEKPYFVAECSL 779 (929)
Q Consensus 702 ke~d~~CsVC~~~E~~~N~Ll~Cd~C~vaVHq~CYGi~~~--p~g~WlCd~C~~~~~~~~s~~~~~~~~~~p~~~~~C~L 779 (929)
..++..|.||.+... .++||.|+.|...+|..|.+.... +.+.|+|..|. .|.+
T Consensus 4 ~~~~~~C~~C~~~g~-~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~-----------------------~C~~ 59 (111)
T 2ysm_A 4 GSSGANCAVCDSPGD-LLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK-----------------------VCQN 59 (111)
T ss_dssp CCCCSCBTTTCCCCC-TTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC-----------------------CCTT
T ss_pred CCCCCCCcCCCCCCC-CcCCeECCCCCCCcChHHhCCccccccccCccCCcCC-----------------------cccc
Confidence 346788999998653 467899999999999999997654 46899999984 3566
Q ss_pred CCCCCC---ceeeccCcchhhhcccc
Q 002388 780 CGGTTG---AFRKSANGQWVHAFCAE 802 (929)
Q Consensus 780 Cp~~gG---aLK~T~~g~WVHv~CAl 802 (929)
|...+. .|.-..=.++.|+.|.-
T Consensus 60 C~~~~~~~~ll~Cd~C~~~yH~~Cl~ 85 (111)
T 2ysm_A 60 CKQSGEDSKMLVCDTCDKGYHTFCLQ 85 (111)
T ss_dssp TCCCSCCTTEEECSSSCCEEEGGGSS
T ss_pred cCccCCCCCeeECCCCCcHHhHHhcC
Confidence 665443 33333445889999984
No 21
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=97.71 E-value=1.6e-05 Score=68.99 Aligned_cols=46 Identities=26% Similarity=0.834 Sum_probs=39.1
Q ss_pred cCcccCCCCCCCCCEEEecccCccccccccc--CccCCCC-ceecccccc
Q 002388 707 SCDICRRSETILNPILICSGCKVAVHLDCYR--NAKESTG-PWYCELCEE 753 (929)
Q Consensus 707 ~CsVC~~~E~~~N~Ll~Cd~C~vaVHq~CYG--i~~~p~g-~WlCd~C~~ 753 (929)
.|.||...+. ++.||.|++|...+|..|++ +..+|.+ +|+|..|..
T Consensus 20 ~C~~C~~~~~-~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQD-PDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSC-GGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcCC-CCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 5778887553 67899999999999999999 5567888 999999974
No 22
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=97.65 E-value=4.1e-05 Score=66.65 Aligned_cols=49 Identities=22% Similarity=0.763 Sum_probs=41.8
Q ss_pred CCCCcCcccCCCCCCCCCEEEecc--cC-cccccccccCccCCCCceeccccccc
Q 002388 703 EHPRSCDICRRSETILNPILICSG--CK-VAVHLDCYRNAKESTGPWYCELCEEL 754 (929)
Q Consensus 703 e~d~~CsVC~~~E~~~N~Ll~Cd~--C~-vaVHq~CYGi~~~p~g~WlCd~C~~~ 754 (929)
....+| ||.+... +.||.|++ |. -.||..|+|+...|.+.|+|..|...
T Consensus 14 ~~~~~C-~C~~~~~--g~MI~CD~~~C~~~wfH~~Cvgl~~~p~g~w~Cp~C~~~ 65 (71)
T 1wen_A 14 NEPTYC-LCHQVSY--GEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQE 65 (71)
T ss_dssp TSCCCS-TTCCCSC--SSEECCSCSSCSCCCEETTTTTCSSCCSSCCCCTTTSSC
T ss_pred CCCCEE-ECCCCCC--CCEeEeeCCCCCCccEecccCCcCcCCCCCEECCCCCcc
Confidence 445778 8998653 68999999 77 48999999999999999999999765
No 23
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=97.62 E-value=3.2e-05 Score=78.23 Aligned_cols=50 Identities=26% Similarity=0.728 Sum_probs=42.3
Q ss_pred CCCCcCcccCCCCCCCCCEEEecccCccccccccc--CccCCCCceeccccccccc
Q 002388 703 EHPRSCDICRRSETILNPILICSGCKVAVHLDCYR--NAKESTGPWYCELCEELLS 756 (929)
Q Consensus 703 e~d~~CsVC~~~E~~~N~Ll~Cd~C~vaVHq~CYG--i~~~p~g~WlCd~C~~~~~ 756 (929)
+++..|.||.+ ++.||.|++|..++|..|.+ ...+|.+.|+|..|+....
T Consensus 2 ~~~~~C~~C~~----~g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~~ 53 (184)
T 3o36_A 2 PNEDWCAVCQN----GGELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLSK 53 (184)
T ss_dssp CSCSSCTTTCC----CSSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred CCCCccccCCC----CCeeeecCCCCcccCccccCCCCCCCCCCCEECccccCccc
Confidence 35688999997 46799999999999999995 4467899999999987643
No 24
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=97.61 E-value=2.4e-05 Score=69.16 Aligned_cols=46 Identities=26% Similarity=0.832 Sum_probs=37.8
Q ss_pred cCcccCCCCCCCCCEEEecccCccccccccc--CccCCCCc-eecccccc
Q 002388 707 SCDICRRSETILNPILICSGCKVAVHLDCYR--NAKESTGP-WYCELCEE 753 (929)
Q Consensus 707 ~CsVC~~~E~~~N~Ll~Cd~C~vaVHq~CYG--i~~~p~g~-WlCd~C~~ 753 (929)
.|.||...+. .+.||.|++|..++|..|++ +..+|.+. |+|..|++
T Consensus 28 ~C~vC~~~~d-~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQD-PDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSC-GGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCCC-CcceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 5777776552 57899999999999999999 45678888 99999975
No 25
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=97.58 E-value=2.2e-05 Score=74.03 Aligned_cols=50 Identities=38% Similarity=0.882 Sum_probs=42.1
Q ss_pred CcCcccCCCCCCCCCEEEecccCccccccccc--CccCCCCceeccccccccc
Q 002388 706 RSCDICRRSETILNPILICSGCKVAVHLDCYR--NAKESTGPWYCELCEELLS 756 (929)
Q Consensus 706 ~~CsVC~~~E~~~N~Ll~Cd~C~vaVHq~CYG--i~~~p~g~WlCd~C~~~~~ 756 (929)
..|.||...+. .+.||.|++|..++|..|++ +..+|.++|+|..|....+
T Consensus 59 ~~C~~C~~~~~-~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~~~ 110 (114)
T 2kwj_A 59 KSCILCGTSEN-DDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWELLK 110 (114)
T ss_dssp CCCTTTTCCTT-TTTEEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHHHHH
T ss_pred CccCcccccCC-CCceEEcCCCCccccccccCCCccCCCCCCeECccccchhh
Confidence 46889988653 67899999999999999999 5577899999999987543
No 26
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=97.56 E-value=3.8e-05 Score=79.16 Aligned_cols=51 Identities=24% Similarity=0.672 Sum_probs=42.7
Q ss_pred CCCCCcCcccCCCCCCCCCEEEecccCccccccccc--CccCCCCceeccccccccc
Q 002388 702 KEHPRSCDICRRSETILNPILICSGCKVAVHLDCYR--NAKESTGPWYCELCEELLS 756 (929)
Q Consensus 702 ke~d~~CsVC~~~E~~~N~Ll~Cd~C~vaVHq~CYG--i~~~p~g~WlCd~C~~~~~ 756 (929)
.+++..|.||.+ ++.||.|++|..++|..|++ ...+|.+.|+|..|....+
T Consensus 4 d~~~~~C~~C~~----~g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~~ 56 (207)
T 3u5n_A 4 DPNEDWCAVCQN----GGDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIGK 56 (207)
T ss_dssp CSSCSSBTTTCC----CEEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred CCCCCCCCCCCC----CCceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCccc
Confidence 346688999997 45799999999999999995 4467899999999987643
No 27
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=97.55 E-value=2.8e-05 Score=67.79 Aligned_cols=53 Identities=19% Similarity=0.556 Sum_probs=43.4
Q ss_pred CCCCCcCcccCCCCCCCCCEEEecccCcccccccccCccCC--CCceecccccccc
Q 002388 702 KEHPRSCDICRRSETILNPILICSGCKVAVHLDCYRNAKES--TGPWYCELCEELL 755 (929)
Q Consensus 702 ke~d~~CsVC~~~E~~~N~Ll~Cd~C~vaVHq~CYGi~~~p--~g~WlCd~C~~~~ 755 (929)
..+..+|.||...+. +..||.|++|...+|..|.|+...+ .+.|+|..|....
T Consensus 15 ~~~~~~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~ 69 (75)
T 2k16_A 15 GNQIWICPGCNKPDD-GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKI 69 (75)
T ss_dssp SCEEECBTTTTBCCS-SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHH
T ss_pred CCCCcCCCCCCCCCC-CCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCch
Confidence 345578999998763 5579999999999999999987544 5899999998753
No 28
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=97.54 E-value=3.6e-05 Score=70.04 Aligned_cols=51 Identities=25% Similarity=0.715 Sum_probs=42.1
Q ss_pred CCCCCcCcccCCCCCCCCCEEEecccC---cccccccccCccCCCCceeccc-ccccc
Q 002388 702 KEHPRSCDICRRSETILNPILICSGCK---VAVHLDCYRNAKESTGPWYCEL-CEELL 755 (929)
Q Consensus 702 ke~d~~CsVC~~~E~~~N~Ll~Cd~C~---vaVHq~CYGi~~~p~g~WlCd~-C~~~~ 755 (929)
.+...+| ||...+. +.||.||+|. --||..|+|+...|.+.|+|.. |....
T Consensus 23 ~~~~~yC-iC~~~~~--g~MI~CD~c~C~~eWfH~~CVgl~~~p~~~W~Cp~cC~~~~ 77 (90)
T 2jmi_A 23 NQEEVYC-FCRNVSY--GPMVACDNPACPFEWFHYGCVGLKQAPKGKWYCSKDCKEIA 77 (90)
T ss_dssp -CCSCCS-TTTCCCS--SSEECCCSSSCSCSCEETTTSSCSSCTTSCCCSSHHHHHHH
T ss_pred CCCCcEE-EeCCCCC--CCEEEecCCCCccccCcCccCCCCcCCCCCccCChhhcchh
Confidence 3455778 9998653 5799999977 7899999999998999999999 98653
No 29
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=97.52 E-value=2.5e-05 Score=65.81 Aligned_cols=47 Identities=23% Similarity=0.822 Sum_probs=39.8
Q ss_pred CCCcCcccCCCCCCCCCEEEecc--cC-cccccccccCccCCCCceecccccc
Q 002388 704 HPRSCDICRRSETILNPILICSG--CK-VAVHLDCYRNAKESTGPWYCELCEE 753 (929)
Q Consensus 704 ~d~~CsVC~~~E~~~N~Ll~Cd~--C~-vaVHq~CYGi~~~p~g~WlCd~C~~ 753 (929)
...+| ||.+.+ .+.||.|++ |. -.||..|+|+...|.+.|+|..|..
T Consensus 9 e~~~C-~C~~~~--~g~mi~CD~cdC~~~wfH~~Cvgl~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 9 EPTYC-LCHQVS--YGEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CCEET-TTTEEC--CSEEEECSCTTCSSCEEETGGGTCSSCCSSCCCCHHHHC
T ss_pred CCCEE-ECCCcC--CCCEEEeCCCCCCCceEehhcCCCCcCCCCCEECcCccC
Confidence 45677 999865 368999999 65 6899999999999999999999964
No 30
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=97.48 E-value=3.1e-05 Score=65.01 Aligned_cols=48 Identities=23% Similarity=0.799 Sum_probs=40.1
Q ss_pred CCCCcCcccCCCCCCCCCEEEecc--cC-cccccccccCccCCCCceecccccc
Q 002388 703 EHPRSCDICRRSETILNPILICSG--CK-VAVHLDCYRNAKESTGPWYCELCEE 753 (929)
Q Consensus 703 e~d~~CsVC~~~E~~~N~Ll~Cd~--C~-vaVHq~CYGi~~~p~g~WlCd~C~~ 753 (929)
.+..+| ||.+.+ .+.||.|++ |. -.+|..|.|+...|.+.|+|..|..
T Consensus 7 ~e~~yC-~C~~~~--~g~mi~CD~~~C~~~wfH~~Cvgl~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 7 NEPTYC-LCHQVS--YGEMIGCDNPDCPIEWFHFACVDLTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp -CCEET-TTTEEC--CSEEEECSCTTCSSCEEETGGGTCSSCCSSCCCCHHHHC
T ss_pred CCCcEE-ECCCCC--CCCeeEeeCCCCCCCCEecccCCcccCCCCCEECcCccC
Confidence 345677 999865 368999999 77 4999999999999999999999964
No 31
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=97.46 E-value=6.4e-05 Score=70.52 Aligned_cols=49 Identities=24% Similarity=0.826 Sum_probs=41.0
Q ss_pred CCCcCcccCCCCCCCCCEEEecccCccccccccc--CccCCCCceeccccc
Q 002388 704 HPRSCDICRRSETILNPILICSGCKVAVHLDCYR--NAKESTGPWYCELCE 752 (929)
Q Consensus 704 ~d~~CsVC~~~E~~~N~Ll~Cd~C~vaVHq~CYG--i~~~p~g~WlCd~C~ 752 (929)
+-..|.||.+.....+.||.|+.|..++|..|+. +..+|++.|+|..|+
T Consensus 60 ~C~~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~ 110 (112)
T 3v43_A 60 ECKTCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICR 110 (112)
T ss_dssp TTCCBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTS
T ss_pred cCCccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCC
Confidence 3447999997654467899999999999999995 557889999999996
No 32
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=97.44 E-value=8.2e-05 Score=67.81 Aligned_cols=50 Identities=22% Similarity=0.734 Sum_probs=42.0
Q ss_pred CCCCcCcccCCCCCCCCCEEEecc--cC-cccccccccCccCCCCceecccccccc
Q 002388 703 EHPRSCDICRRSETILNPILICSG--CK-VAVHLDCYRNAKESTGPWYCELCEELL 755 (929)
Q Consensus 703 e~d~~CsVC~~~E~~~N~Ll~Cd~--C~-vaVHq~CYGi~~~p~g~WlCd~C~~~~ 755 (929)
....+| ||.+... +.||.|++ |. --||..|.|+...|.+.|+|..|....
T Consensus 34 ~e~~yC-iC~~~~~--g~MI~CD~~dC~~~WfH~~CVgl~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 34 NEPTYC-LCHQVSY--GEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp CCCBCS-TTCCBCC--SCCCCCSCSSCSCCCCCSTTTTCSSCCCSSCCCTTTCCCC
T ss_pred CCCcEE-ECCCCCC--CCEeEecCCCCCCCCEecccCCcCcCCCCCEECcCccCcC
Confidence 455778 9998653 68999999 66 579999999998899999999997653
No 33
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=97.29 E-value=8.4e-05 Score=75.84 Aligned_cols=46 Identities=28% Similarity=0.843 Sum_probs=40.1
Q ss_pred CCcCcccCCCCCCCCCEEEecccCcccccccc--cCccCCCCceeccccccc
Q 002388 705 PRSCDICRRSETILNPILICSGCKVAVHLDCY--RNAKESTGPWYCELCEEL 754 (929)
Q Consensus 705 d~~CsVC~~~E~~~N~Ll~Cd~C~vaVHq~CY--Gi~~~p~g~WlCd~C~~~ 754 (929)
+..|.||.+ ++.+|.|++|..++|..|. +...+|.|.|+|..|...
T Consensus 2 ~~~C~~C~~----~g~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 2 ATICRVCQK----PGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCCBTTTCC----CSSCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred CCcCccCCC----CCceeECCCCCchhccccCCCCcccCCCCCCCCcCccCC
Confidence 467999997 4679999999999999999 456778999999999875
No 34
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=97.23 E-value=9.5e-05 Score=62.72 Aligned_cols=49 Identities=24% Similarity=0.762 Sum_probs=40.4
Q ss_pred CCCCcCcccCCCCCCCCCEEEecc--cC-cccccccccCccCCCCceeccccccc
Q 002388 703 EHPRSCDICRRSETILNPILICSG--CK-VAVHLDCYRNAKESTGPWYCELCEEL 754 (929)
Q Consensus 703 e~d~~CsVC~~~E~~~N~Ll~Cd~--C~-vaVHq~CYGi~~~p~g~WlCd~C~~~ 754 (929)
.+..+| +|.+.+ .+.||.|++ |. --||..|.|+...|.+.|+|..|...
T Consensus 9 ~e~~yC-~C~~~~--~g~MI~CD~c~C~~~WfH~~Cvgl~~~p~~~w~Cp~C~~~ 60 (62)
T 2g6q_A 9 NEPTYC-LCNQVS--YGEMIGCDNEQCPIEWFHFSCVSLTYKPKGKWYCPKCRGD 60 (62)
T ss_dssp -CCEET-TTTEEC--CSEEEECSCTTCSSCEEETGGGTCSSCCSSCCCCHHHHTC
T ss_pred CCCcEE-ECCCCC--CCCeeeeeCCCCCcccEecccCCcCcCCCCCEECcCcccC
Confidence 345777 999865 357999999 55 79999999999889999999999753
No 35
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=97.21 E-value=0.00026 Score=59.75 Aligned_cols=53 Identities=17% Similarity=0.396 Sum_probs=43.9
Q ss_pred CCCCCcCcccCCCCCCCCCEEEecccCcccccccccCccCC---CCceeccccccc
Q 002388 702 KEHPRSCDICRRSETILNPILICSGCKVAVHLDCYRNAKES---TGPWYCELCEEL 754 (929)
Q Consensus 702 ke~d~~CsVC~~~E~~~N~Ll~Cd~C~vaVHq~CYGi~~~p---~g~WlCd~C~~~ 754 (929)
.++..+|.+|.........+|.|+.|..=+|..|.|+...+ ...|+|..|...
T Consensus 3 ~~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 3 SGSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp CSSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 45678899999876445789999999999999999987543 378999999764
No 36
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=97.12 E-value=0.0002 Score=75.05 Aligned_cols=47 Identities=26% Similarity=0.800 Sum_probs=36.3
Q ss_pred CcCcccCCCCCCCCCEEEecccCccccccccc--CccCCCC-ceecccccc
Q 002388 706 RSCDICRRSETILNPILICSGCKVAVHLDCYR--NAKESTG-PWYCELCEE 753 (929)
Q Consensus 706 ~~CsVC~~~E~~~N~Ll~Cd~C~vaVHq~CYG--i~~~p~g-~WlCd~C~~ 753 (929)
..|.+|...+. .+.||.|++|..++|..|.+ ...+|.+ +|+|..|..
T Consensus 175 c~C~vC~~~~~-~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 175 CACHLCGGRQD-PDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp TSCSSSCCCCC---CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCCcCCCCCCC-CCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 46999988653 67899999999999999999 4467888 999999964
No 37
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=97.09 E-value=0.00046 Score=63.47 Aligned_cols=47 Identities=26% Similarity=0.668 Sum_probs=37.7
Q ss_pred CCcCcccCCCCCCCCCEEEecccCcccccccccCccC-CCCceecccccc
Q 002388 705 PRSCDICRRSETILNPILICSGCKVAVHLDCYRNAKE-STGPWYCELCEE 753 (929)
Q Consensus 705 d~~CsVC~~~E~~~N~Ll~Cd~C~vaVHq~CYGi~~~-p~g~WlCd~C~~ 753 (929)
...| ||...+. .+.||.|+.|...+|..|+|+... ..+.|+|..|..
T Consensus 28 ~vrC-iC~~~~~-~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 28 VTRC-ICGFTHD-DGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp BCCC-TTSCCSC-SSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred CEEe-ECCCccC-CCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 3557 9987653 578999999999999999998643 245899999964
No 38
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=97.07 E-value=0.00032 Score=65.39 Aligned_cols=48 Identities=25% Similarity=0.659 Sum_probs=40.2
Q ss_pred CcCcccCCCCCCCCCEEEecccCccccccccc--CccCCCCceeccccccc
Q 002388 706 RSCDICRRSETILNPILICSGCKVAVHLDCYR--NAKESTGPWYCELCEEL 754 (929)
Q Consensus 706 ~~CsVC~~~E~~~N~Ll~Cd~C~vaVHq~CYG--i~~~p~g~WlCd~C~~~ 754 (929)
..|.||..... .+.||.|+.|...+|..|+. ...+|.+.|+|..|..-
T Consensus 55 ~~C~~C~~~~~-~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~c 104 (111)
T 2ysm_A 55 KVCQNCKQSGE-DSKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRIC 104 (111)
T ss_dssp CCCTTTCCCSC-CTTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHCC
T ss_pred CcccccCccCC-CCCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcCc
Confidence 46888887653 46899999999999999998 44678899999999765
No 39
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=96.93 E-value=0.00059 Score=58.82 Aligned_cols=50 Identities=22% Similarity=0.627 Sum_probs=40.7
Q ss_pred CCCCcCcccCCCCCCCCCEEEecccCcccccccccCccC-CCCceeccccccc
Q 002388 703 EHPRSCDICRRSETILNPILICSGCKVAVHLDCYRNAKE-STGPWYCELCEEL 754 (929)
Q Consensus 703 e~d~~CsVC~~~E~~~N~Ll~Cd~C~vaVHq~CYGi~~~-p~g~WlCd~C~~~ 754 (929)
.+..+| ||...+. +..||.|+.|..=+|..|.|+... ..+.|+|..|...
T Consensus 17 ~~~~~C-iC~~~~~-~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~s 67 (68)
T 3o70_A 17 QGLVTC-FCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRDS 67 (68)
T ss_dssp TTCCCS-TTCCCCT-TCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHTC
T ss_pred CCceEe-ECCCcCC-CCCEEECCCCCccccccccCcCcccCCCcEECCCCCCC
Confidence 345778 9998654 567999999999999999998863 3578999999753
No 40
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.91 E-value=0.00032 Score=60.83 Aligned_cols=49 Identities=22% Similarity=0.649 Sum_probs=40.7
Q ss_pred CCCcCcccCCCCCCCCCEEEecccC---cccccccccCccCCCCceecccccccc
Q 002388 704 HPRSCDICRRSETILNPILICSGCK---VAVHLDCYRNAKESTGPWYCELCEELL 755 (929)
Q Consensus 704 ~d~~CsVC~~~E~~~N~Ll~Cd~C~---vaVHq~CYGi~~~p~g~WlCd~C~~~~ 755 (929)
...+| +|...+ .+.||.||+|+ .-||..|.|+...+.+.|+|..|....
T Consensus 5 ~~~yC-~C~~~~--~g~MI~CD~cdC~~~WfH~~Cvgl~~~p~~~w~Cp~C~~~~ 56 (70)
T 1x4i_A 5 SSGYC-ICNQVS--YGEMVGCDNQDCPIEWFHYGCVGLTEAPKGKWYCPQCTAAM 56 (70)
T ss_dssp CCCCS-TTSCCC--CSSEECCSCTTCSCCCEEHHHHTCSSCCSSCCCCHHHHHHH
T ss_pred CCeEE-EcCCCC--CCCEeEeCCCCCCccCCcccccccCcCCCCCEECCCCCccc
Confidence 44667 698864 35899999985 789999999998889999999997653
No 41
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=96.80 E-value=0.00077 Score=58.43 Aligned_cols=51 Identities=25% Similarity=0.523 Sum_probs=41.3
Q ss_pred CCCCcCcccCCCCCCCCCEEEecccCcccccccccCccC--CCCceeccccccc
Q 002388 703 EHPRSCDICRRSETILNPILICSGCKVAVHLDCYRNAKE--STGPWYCELCEEL 754 (929)
Q Consensus 703 e~d~~CsVC~~~E~~~N~Ll~Cd~C~vaVHq~CYGi~~~--p~g~WlCd~C~~~ 754 (929)
+...+| ||...+..+..||.|+.|..=+|..|+|+... ....|+|..|...
T Consensus 14 ~~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~ 66 (72)
T 1wee_A 14 NWKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIEL 66 (72)
T ss_dssp SSEECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHH
T ss_pred CcceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCC
Confidence 345779 89987644557999999999999999998753 3578999999865
No 42
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=96.68 E-value=0.00048 Score=58.95 Aligned_cols=50 Identities=22% Similarity=0.581 Sum_probs=40.8
Q ss_pred CCCCcCcccCCCCCCCCCEEEec-ccCcccccccccCcc--------CCCCceeccccc
Q 002388 703 EHPRSCDICRRSETILNPILICS-GCKVAVHLDCYRNAK--------ESTGPWYCELCE 752 (929)
Q Consensus 703 e~d~~CsVC~~~E~~~N~Ll~Cd-~C~vaVHq~CYGi~~--------~p~g~WlCd~C~ 752 (929)
+....|.+|.........+|.|+ .|..=||..|.|+.. .+.+.|+|+.|.
T Consensus 6 ~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvglt~~~~~~l~~e~~~~w~C~~C~ 64 (65)
T 2vpb_A 6 DPVYPCGICTNEVNDDQDAILCEASCQKWFHRICTGMTETAYGLLTAEASAVWGCDTCM 64 (65)
T ss_dssp ---CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHTCCHHHHHHHHHCTTEEECCHHHH
T ss_pred CCcCcCccCCCccCCCCCeEecccCccccCchhccCCCHHHHHHhhccCCCcEECcCcc
Confidence 44577999999765566899999 999999999999874 366799999996
No 43
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=96.68 E-value=0.00099 Score=58.68 Aligned_cols=51 Identities=25% Similarity=0.648 Sum_probs=41.7
Q ss_pred CCCCcCcccCCCCCCCCCEEEec--ccCcccccccccCccCC-------CCceecccccccc
Q 002388 703 EHPRSCDICRRSETILNPILICS--GCKVAVHLDCYRNAKES-------TGPWYCELCEELL 755 (929)
Q Consensus 703 e~d~~CsVC~~~E~~~N~Ll~Cd--~C~vaVHq~CYGi~~~p-------~g~WlCd~C~~~~ 755 (929)
+...+| ||...+. .+.||.|+ .|..=+|..|+|+...+ ...|+|..|....
T Consensus 14 ~~~~~C-iC~~~~~-~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~ 73 (78)
T 1wew_A 14 EIKVRC-VCGNSLE-TDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTS 73 (78)
T ss_dssp CCCCCC-SSCCCCC-CSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCC
T ss_pred CCCEEe-ECCCcCC-CCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCccc
Confidence 355778 8999743 56899999 99999999999998654 3689999998753
No 44
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=96.47 E-value=0.0011 Score=58.32 Aligned_cols=52 Identities=23% Similarity=0.529 Sum_probs=42.0
Q ss_pred CCCCcCcccCCCCCCCCCEEEecccCcccccccccCccCC---CCceecccccccc
Q 002388 703 EHPRSCDICRRSETILNPILICSGCKVAVHLDCYRNAKES---TGPWYCELCEELL 755 (929)
Q Consensus 703 e~d~~CsVC~~~E~~~N~Ll~Cd~C~vaVHq~CYGi~~~p---~g~WlCd~C~~~~ 755 (929)
....+| +|.........||.|+.|..=+|..|.|+...+ ...|+|..|....
T Consensus 10 ~~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 10 LVPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred CCccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 445667 999876546789999999999999999987543 3789999998653
No 45
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=96.41 E-value=0.0012 Score=57.64 Aligned_cols=50 Identities=24% Similarity=0.549 Sum_probs=40.8
Q ss_pred CCCcCcccCCCCCCCCCEEEecccCcccccccccCccCC-------CCceecccccccc
Q 002388 704 HPRSCDICRRSETILNPILICSGCKVAVHLDCYRNAKES-------TGPWYCELCEELL 755 (929)
Q Consensus 704 ~d~~CsVC~~~E~~~N~Ll~Cd~C~vaVHq~CYGi~~~p-------~g~WlCd~C~~~~ 755 (929)
+..+| +|..... +..||.|+.|..=+|..|.|+...+ ...|+|..|....
T Consensus 15 ~~~~C-~C~~~~~-~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~ 71 (76)
T 1wem_A 15 NALYC-ICRQPHN-NRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILS 71 (76)
T ss_dssp TCCCS-TTCCCCC-SSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHS
T ss_pred CCCEE-ECCCccC-CCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCcc
Confidence 34677 9998764 4589999999999999999987542 5789999998753
No 46
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=96.12 E-value=0.0019 Score=52.63 Aligned_cols=46 Identities=22% Similarity=0.439 Sum_probs=37.9
Q ss_pred cCcccCCCCCCCCCEEEec-ccCcccccccccCccCC--CCceeccccc
Q 002388 707 SCDICRRSETILNPILICS-GCKVAVHLDCYRNAKES--TGPWYCELCE 752 (929)
Q Consensus 707 ~CsVC~~~E~~~N~Ll~Cd-~C~vaVHq~CYGi~~~p--~g~WlCd~C~ 752 (929)
.|.+|..+.+.+..+|.|+ .|..=+|..|.|+...+ ...|+|..|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 4889988775567899999 89999999999987543 4789999984
No 47
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=96.10 E-value=0.00092 Score=66.70 Aligned_cols=51 Identities=20% Similarity=0.445 Sum_probs=42.1
Q ss_pred CCCCcCcccCCCCCCCCCEEEecccCcccccccccCccC---CCCceeccccccc
Q 002388 703 EHPRSCDICRRSETILNPILICSGCKVAVHLDCYRNAKE---STGPWYCELCEEL 754 (929)
Q Consensus 703 e~d~~CsVC~~~E~~~N~Ll~Cd~C~vaVHq~CYGi~~~---p~g~WlCd~C~~~ 754 (929)
++..+| +|.......+.+|.|+.|..-+|..|.|+... ..+.|+|..|...
T Consensus 6 ~~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 6 DTKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp -CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CCCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 456889 99987655678999999999999999998643 3678999999875
No 48
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=96.06 E-value=0.0024 Score=59.48 Aligned_cols=50 Identities=24% Similarity=0.650 Sum_probs=42.2
Q ss_pred CcCcccCCCCCCCCCEEEec-ccCcccccccccCcc--------CCCCceecccccccc
Q 002388 706 RSCDICRRSETILNPILICS-GCKVAVHLDCYRNAK--------ESTGPWYCELCEELL 755 (929)
Q Consensus 706 ~~CsVC~~~E~~~N~Ll~Cd-~C~vaVHq~CYGi~~--------~p~g~WlCd~C~~~~ 755 (929)
..|.+|.......+.++.|+ .|.-=||..|.|+.. .+.+.|+|..|....
T Consensus 4 ~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~ 62 (105)
T 2xb1_A 4 YPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTK 62 (105)
T ss_dssp CBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTT
T ss_pred CCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcC
Confidence 57999999865456899998 999999999999874 356899999998753
No 49
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=95.80 E-value=0.0059 Score=52.35 Aligned_cols=49 Identities=29% Similarity=0.699 Sum_probs=37.9
Q ss_pred CCCcCcccCCCCCCCCCEEEecc--cCcccccccccCccCC------CCceeccccccc
Q 002388 704 HPRSCDICRRSETILNPILICSG--CKVAVHLDCYRNAKES------TGPWYCELCEEL 754 (929)
Q Consensus 704 ~d~~CsVC~~~E~~~N~Ll~Cd~--C~vaVHq~CYGi~~~p------~g~WlCd~C~~~ 754 (929)
....| ||+..+. .+.||.|++ |..=+|..|+|+...+ ...|+|..|+..
T Consensus 9 ~~v~C-~C~~~~~-~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~~ 65 (68)
T 2rsd_A 9 AKVRC-ICSSTMV-NDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRLS 65 (68)
T ss_dssp CEECC-TTCCCSC-CSCEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHHH
T ss_pred CCEEe-ECCCCcC-CCCEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccCc
Confidence 34667 8987543 468999995 9999999999987543 246999999754
No 50
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=95.73 E-value=0.0053 Score=49.92 Aligned_cols=44 Identities=23% Similarity=0.650 Sum_probs=36.6
Q ss_pred cccCCCCCCCCCEEEecccCcccccccccCccCC-CCceecccccc
Q 002388 709 DICRRSETILNPILICSGCKVAVHLDCYRNAKES-TGPWYCELCEE 753 (929)
Q Consensus 709 sVC~~~E~~~N~Ll~Cd~C~vaVHq~CYGi~~~p-~g~WlCd~C~~ 753 (929)
.||...+. +..||.|+.|..=+|..|.|+...+ .+.|+|..|..
T Consensus 7 C~C~~~~~-~~~MI~Cd~C~~W~H~~Cvgi~~~~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 7 CFCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 51 (52)
T ss_dssp STTCCBCT-TCCEEECTTTCCEEETTTTTCCGGGCCSSCCCHHHHT
T ss_pred EEeCCcCC-CCCEEEcCCCCccccccccCCCcccCCCcEECcCCCC
Confidence 47987654 6689999999999999999988643 57899999964
No 51
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=95.51 E-value=0.0047 Score=60.50 Aligned_cols=48 Identities=21% Similarity=0.625 Sum_probs=40.8
Q ss_pred CCCCCcCcccCCCCCCCCCEEEecccCcccccccccCcc---------CCCCceecccccc
Q 002388 702 KEHPRSCDICRRSETILNPILICSGCKVAVHLDCYRNAK---------ESTGPWYCELCEE 753 (929)
Q Consensus 702 ke~d~~CsVC~~~E~~~N~Ll~Cd~C~vaVHq~CYGi~~---------~p~g~WlCd~C~~ 753 (929)
..++.+|.||.+ ++.|+.|+.|..+||..|...+. .+.++|.|-.|..
T Consensus 60 Dg~~d~C~vC~~----GG~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 60 DGMDEQCRWCAE----GGNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp TSCBCSCSSSCC----CSSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCCeecccCC----CCcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 446789999998 68899999999999999997331 3789999999975
No 52
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=94.84 E-value=0.0074 Score=52.64 Aligned_cols=48 Identities=25% Similarity=0.558 Sum_probs=39.3
Q ss_pred CcCcccCCCCCCCCCEEEecccCcccccccccCccCC---CCceeccccccc
Q 002388 706 RSCDICRRSETILNPILICSGCKVAVHLDCYRNAKES---TGPWYCELCEEL 754 (929)
Q Consensus 706 ~~CsVC~~~E~~~N~Ll~Cd~C~vaVHq~CYGi~~~p---~g~WlCd~C~~~ 754 (929)
.+| ||......+..||.|+.|..=+|..|.|+...+ .+.|+|..|...
T Consensus 11 ~yC-iC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~ 61 (75)
T 3kqi_A 11 VYC-VCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKT 61 (75)
T ss_dssp EET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHH
T ss_pred eEE-ECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCccc
Confidence 445 998765445789999999999999999988654 267999999865
No 53
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=94.45 E-value=0.0097 Score=57.43 Aligned_cols=48 Identities=21% Similarity=0.603 Sum_probs=40.0
Q ss_pred CCCCCcCcccCCCCCCCCCEEEecccCcccccccccCc-------cC--CCCceecccccc
Q 002388 702 KEHPRSCDICRRSETILNPILICSGCKVAVHLDCYRNA-------KE--STGPWYCELCEE 753 (929)
Q Consensus 702 ke~d~~CsVC~~~E~~~N~Ll~Cd~C~vaVHq~CYGi~-------~~--p~g~WlCd~C~~ 753 (929)
..++..|.||.+ +++++.|+.|..+||..|.... .+ +.++|.|-.|..
T Consensus 54 Dg~~~~C~vC~d----GG~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 54 DGMDEQCRWCAE----GGNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp TSCBSSCTTTCC----CSEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCCCcCeecCC----CCeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 345678999998 6889999999999999999632 33 689999999965
No 54
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=92.60 E-value=0.025 Score=65.47 Aligned_cols=49 Identities=24% Similarity=0.545 Sum_probs=40.1
Q ss_pred CCcCcccCCCCCCCCCEEEecccCcccccccccCccCC---CCceeccccccc
Q 002388 705 PRSCDICRRSETILNPILICSGCKVAVHLDCYRNAKES---TGPWYCELCEEL 754 (929)
Q Consensus 705 d~~CsVC~~~E~~~N~Ll~Cd~C~vaVHq~CYGi~~~p---~g~WlCd~C~~~ 754 (929)
..+| +|....+....||.|+.|..=+|..|.|+...+ .+.|+|..|...
T Consensus 37 ~~yC-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~ 88 (488)
T 3kv5_D 37 PVYC-VCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVL 88 (488)
T ss_dssp CEET-TTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHHH
T ss_pred CeEE-eCCCcCCCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCCCcCC
Confidence 3556 999865446789999999999999999998654 267999999764
No 55
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=92.03 E-value=0.045 Score=55.67 Aligned_cols=49 Identities=22% Similarity=0.512 Sum_probs=38.1
Q ss_pred CcCcccCCCCCCC---CCEEEecccCcccccccccCccC--------C-CCceeccccccc
Q 002388 706 RSCDICRRSETIL---NPILICSGCKVAVHLDCYRNAKE--------S-TGPWYCELCEEL 754 (929)
Q Consensus 706 ~~CsVC~~~E~~~---N~Ll~Cd~C~vaVHq~CYGi~~~--------p-~g~WlCd~C~~~ 754 (929)
..|.||....... ..||.|+.|..=||..|-|+... | ...|+|..|...
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~ 63 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTER 63 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCS
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCC
Confidence 5699999875432 35999999999999999998641 2 237999999764
No 56
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=91.73 E-value=0.077 Score=46.81 Aligned_cols=35 Identities=14% Similarity=0.326 Sum_probs=32.4
Q ss_pred hHHHHHHHHHhhCccccccchhhhccChhhhhhhc
Q 002388 220 NFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (929)
Q Consensus 220 ~~~~~l~kli~~gkv~v~d~~~~~gis~~~l~~~~ 254 (929)
.+..||+-|-++|.|+|.|||.++|+|+++++.-|
T Consensus 3 ~L~~Il~~L~~~g~vsv~eLa~~l~VS~~TIRrdL 37 (78)
T 1xn7_A 3 SLIQVRDLLALRGRMEAAQISQTLNTPQPMINAML 37 (78)
T ss_dssp CHHHHHHHHHHSCSBCHHHHHHHTTCCHHHHHHHH
T ss_pred hHHHHHHHHHHcCCCcHHHHHHHHCcCHHHHHHHH
Confidence 36788999999999999999999999999999888
No 57
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=90.74 E-value=0.092 Score=47.37 Aligned_cols=34 Identities=15% Similarity=0.315 Sum_probs=31.9
Q ss_pred HHHHHHHHHhhCccccccchhhhccChhhhhhhc
Q 002388 221 FTLILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (929)
Q Consensus 221 ~~~~l~kli~~gkv~v~d~~~~~gis~~~l~~~~ 254 (929)
+..||+-|-++|.|+|.|||.++|+|+++++.-|
T Consensus 4 L~~Il~~L~~~g~vsv~eLA~~l~VS~~TIRrDL 37 (87)
T 2k02_A 4 LMEVRDMLALQGRMEAKQLSARLQTPQPLIDAML 37 (87)
T ss_dssp THHHHHHHHHSCSEEHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHCcCHHHHHHHH
Confidence 5778999999999999999999999999999888
No 58
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=89.46 E-value=0.2 Score=43.92 Aligned_cols=30 Identities=23% Similarity=0.574 Sum_probs=27.0
Q ss_pred CCcceeCCCC--CCceeecCCcCcccccchhhh
Q 002388 827 IDVCCICRHK--HGICIKCNYGNCQTTFHPTCA 857 (929)
Q Consensus 827 k~~C~iC~~~--~GacIqC~~~~C~~~FH~~CA 857 (929)
...| +|++. .|.+|+|....|..|||..|.
T Consensus 16 ~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CV 47 (78)
T 1wew_A 16 KVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCV 47 (78)
T ss_dssp CCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHH
T ss_pred CEEe-ECCCcCCCCCEEEECCccCCccccCEEE
Confidence 4677 89985 899999998899999999998
No 59
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=88.03 E-value=0.2 Score=41.95 Aligned_cols=30 Identities=27% Similarity=0.699 Sum_probs=26.0
Q ss_pred CCcceeCCCC---CCceeecCCcCcccccchhhhh
Q 002388 827 IDVCCICRHK---HGICIKCNYGNCQTTFHPTCAR 858 (929)
Q Consensus 827 k~~C~iC~~~---~GacIqC~~~~C~~~FH~~CA~ 858 (929)
...|.+|++. .+.+|+|. .|..+||..|+-
T Consensus 6 ~~~C~~C~~~~~~~~~mI~Cd--~C~~WfH~~Cvg 38 (64)
T 1we9_A 6 SGQCGACGESYAADEFWICCD--LCEMWFHGKCVK 38 (64)
T ss_dssp CCCCSSSCCCCCSSSCEEECS--SSCCEEETTTTT
T ss_pred CCCCCCCCCccCCCCCEEEcc--CCCCCCCccccC
Confidence 3678899986 57899999 899999999983
No 60
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=87.86 E-value=0.28 Score=42.58 Aligned_cols=28 Identities=36% Similarity=0.886 Sum_probs=24.2
Q ss_pred CCcceeCCCC--CCceeecCCcCcccccchhhh
Q 002388 827 IDVCCICRHK--HGICIKCNYGNCQTTFHPTCA 857 (929)
Q Consensus 827 k~~C~iC~~~--~GacIqC~~~~C~~~FH~~CA 857 (929)
...| +|++. .+.+|+|. .|..+||..|.
T Consensus 16 ~~~C-~C~~~~~~~~MI~Cd--~C~~WfH~~Cv 45 (76)
T 1wem_A 16 ALYC-ICRQPHNNRFMICCD--RCEEWFHGDCV 45 (76)
T ss_dssp CCCS-TTCCCCCSSCEEECS--SSCCEEEHHHH
T ss_pred CCEE-ECCCccCCCCEEEeC--CCCCcEeCeEE
Confidence 4667 89986 46899999 89999999998
No 61
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=86.75 E-value=0.084 Score=60.48 Aligned_cols=48 Identities=23% Similarity=0.447 Sum_probs=39.4
Q ss_pred cCcccCCCCCCCCCEEEecccCcccccccccCccCC---CCceeccccccc
Q 002388 707 SCDICRRSETILNPILICSGCKVAVHLDCYRNAKES---TGPWYCELCEEL 754 (929)
Q Consensus 707 ~CsVC~~~E~~~N~Ll~Cd~C~vaVHq~CYGi~~~p---~g~WlCd~C~~~ 754 (929)
..++|......++.||.|+.|..=+|..|.|+...+ .+.|+|..|...
T Consensus 6 ~yCiC~~~~d~~~~MIqCD~C~~WfH~~CVgi~~~~~~~~~~y~C~~C~~~ 56 (447)
T 3kv4_A 6 VYCLCRLPYDVTRFMIECDMCQDWFHGSCVGVEEEKAADIDLYHCPNCEVL 56 (447)
T ss_dssp EETTTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTEEECCCHHHHHH
T ss_pred eEEeCCCcCCCCCCeEEcCCCCcccccccCCcCcccccCCCEEECCCCccc
Confidence 456998865446889999999999999999988643 367999999765
No 62
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=85.89 E-value=0.44 Score=41.73 Aligned_cols=27 Identities=37% Similarity=0.941 Sum_probs=23.9
Q ss_pred CcceeCCCC---CCceeecCCcCcccccchhhh
Q 002388 828 DVCCICRHK---HGICIKCNYGNCQTTFHPTCA 857 (929)
Q Consensus 828 ~~C~iC~~~---~GacIqC~~~~C~~~FH~~CA 857 (929)
..| +|++. .+.+|+|. .|..+||..|.
T Consensus 13 ~~C-~C~~~~d~~~~MIqCd--~C~~WfH~~Cv 42 (79)
T 1wep_A 13 VYC-LCRQPYNVNHFMIECG--LCQDWFHGSCV 42 (79)
T ss_dssp CCS-TTSCSCCSSSCEEEBT--TTCCEEEHHHH
T ss_pred cEE-EcCCccCCCCceEEcC--CCCCcEEeeec
Confidence 556 99986 58999999 89999999998
No 63
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=85.50 E-value=0.41 Score=43.74 Aligned_cols=46 Identities=24% Similarity=0.510 Sum_probs=32.1
Q ss_pred CcceeCCCC--CCceeecCCcCcccccchhhhhhcCceEEEeeCCCcceeeeccccccch
Q 002388 828 DVCCICRHK--HGICIKCNYGNCQTTFHPTCARSAGFYLNVKSTGGNFQHKAYCEKHSLE 885 (929)
Q Consensus 828 ~~C~iC~~~--~GacIqC~~~~C~~~FH~~CA~~aGl~~~~k~~~g~~~~~ayC~kHs~~ 885 (929)
..| +|+.. .|.+|+|. .|..+||..|.-..-- .. .-..||+.-.+.
T Consensus 29 vrC-iC~~~~~~~~mi~Cd--~C~~w~H~~C~~~~~~-----~~----p~~w~C~~C~~~ 76 (98)
T 2lv9_A 29 TRC-ICGFTHDDGYMICCD--KCSVWQHIDCMGIDRQ-----HI----PDTYLCERCQPR 76 (98)
T ss_dssp CCC-TTSCCSCSSCEEEBT--TTCBEEETTTTTCCTT-----SC----CSSBCCTTTSSS
T ss_pred EEe-ECCCccCCCcEEEcC--CCCCcCcCcCCCCCcc-----CC----CCCEECCCCcCC
Confidence 456 78875 68999999 8999999999843211 11 123588887654
No 64
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=85.26 E-value=0.48 Score=43.09 Aligned_cols=31 Identities=29% Similarity=0.724 Sum_probs=25.8
Q ss_pred CCcceeCCCC-CCceeecCCcCcc-cccchhhhh
Q 002388 827 IDVCCICRHK-HGICIKCNYGNCQ-TTFHPTCAR 858 (929)
Q Consensus 827 k~~C~iC~~~-~GacIqC~~~~C~-~~FH~~CA~ 858 (929)
...| +|++. .|.+|+|...+|. .+||..|.-
T Consensus 36 ~~yC-iC~~~~~g~MI~CD~~dC~~~WfH~~CVg 68 (91)
T 1weu_A 36 PTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVG 68 (91)
T ss_dssp CBCS-TTCCBCCSCCCCCSCSSCSCCCCCSTTTT
T ss_pred CcEE-ECCCCCCCCEeEecCCCCCCCCEecccCC
Confidence 4667 99984 6899999966698 799999984
No 65
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=84.91 E-value=0.54 Score=40.68 Aligned_cols=31 Identities=29% Similarity=0.724 Sum_probs=25.9
Q ss_pred CCcceeCCCC-CCceeecCCcCcc-cccchhhhh
Q 002388 827 IDVCCICRHK-HGICIKCNYGNCQ-TTFHPTCAR 858 (929)
Q Consensus 827 k~~C~iC~~~-~GacIqC~~~~C~-~~FH~~CA~ 858 (929)
...| +|++. .|.+|.|...+|. .+||..|.-
T Consensus 16 ~~~C-~C~~~~~g~MI~CD~~~C~~~wfH~~Cvg 48 (71)
T 1wen_A 16 PTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVG 48 (71)
T ss_dssp CCCS-TTCCCSCSSEECCSCSSCSCCCEETTTTT
T ss_pred CCEE-ECCCCCCCCEeEeeCCCCCCccEecccCC
Confidence 4677 89985 6899999966698 799999984
No 66
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=84.43 E-value=0.48 Score=40.64 Aligned_cols=30 Identities=33% Similarity=0.782 Sum_probs=24.9
Q ss_pred CCcceeCCCC--CCceeecCCcCcccccchhhhhh
Q 002388 827 IDVCCICRHK--HGICIKCNYGNCQTTFHPTCARS 859 (929)
Q Consensus 827 k~~C~iC~~~--~GacIqC~~~~C~~~FH~~CA~~ 859 (929)
...| +|++. ++.+|+|. .|..+||..|.-.
T Consensus 19 ~~~C-iC~~~~~~~~MIqCd--~C~~WfH~~Cvgi 50 (68)
T 3o70_A 19 LVTC-FCMKPFAGRPMIECN--ECHTWIHLSCAKI 50 (68)
T ss_dssp CCCS-TTCCCCTTCCEEECT--TTCCEEETTTTTC
T ss_pred ceEe-ECCCcCCCCCEEECC--CCCccccccccCc
Confidence 4677 99986 45799999 7999999999843
No 67
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=84.17 E-value=0.42 Score=42.93 Aligned_cols=50 Identities=22% Similarity=0.682 Sum_probs=39.3
Q ss_pred CCCCcCcccCCCCCCCCCEEEecccCcccccccccCc--------------cCCCCceeccccccc
Q 002388 703 EHPRSCDICRRSETILNPILICSGCKVAVHLDCYRNA--------------KESTGPWYCELCEEL 754 (929)
Q Consensus 703 e~d~~CsVC~~~E~~~N~Ll~Cd~C~vaVHq~CYGi~--------------~~p~g~WlCd~C~~~ 754 (929)
.+|..|.||...+ .+.++-|.-|...+|..|..-. -.++..|.|-.|.+.
T Consensus 13 ~~D~~C~VC~~~t--~~~l~pCRvC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~CenL 76 (89)
T 1wil_A 13 VNDEMCDVCEVWT--AESLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCDNI 76 (89)
T ss_dssp CCSCCCTTTCCCC--SSCCSSCSSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTCCC
T ss_pred CCCcccCcccccc--ccceeccccccccccHhhcccccccccHHHHHHHHccCCCCCccccccchh
Confidence 3678899998654 4778899999999999998321 124678999999875
No 68
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=82.29 E-value=0.65 Score=39.57 Aligned_cols=29 Identities=31% Similarity=0.675 Sum_probs=24.8
Q ss_pred CcceeCCCC--CCceeecCCcCcccccchhhh
Q 002388 828 DVCCICRHK--HGICIKCNYGNCQTTFHPTCA 857 (929)
Q Consensus 828 ~~C~iC~~~--~GacIqC~~~~C~~~FH~~CA 857 (929)
..| +|+.. .|.+|+|....|..|||..|.
T Consensus 11 v~C-~C~~~~~~g~mI~CD~~~C~~W~H~~Cv 41 (68)
T 2rsd_A 11 VRC-ICSSTMVNDSMIQCEDQRCQVWQHLNCV 41 (68)
T ss_dssp ECC-TTCCCSCCSCEEECSCTTTCEEEETTTS
T ss_pred EEe-ECCCCcCCCCEEEECCCCCCCeEchhhC
Confidence 456 79874 799999996679999999997
No 69
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=82.27 E-value=0.48 Score=40.73 Aligned_cols=30 Identities=27% Similarity=0.620 Sum_probs=24.8
Q ss_pred CCcceeCCCC--CC-ceeecCCcCcccccchhhhhh
Q 002388 827 IDVCCICRHK--HG-ICIKCNYGNCQTTFHPTCARS 859 (929)
Q Consensus 827 k~~C~iC~~~--~G-acIqC~~~~C~~~FH~~CA~~ 859 (929)
...| +|++. .| .+|+|. .|..+||..|.-.
T Consensus 16 ~~~C-~C~~~~~~g~~mI~Cd--~C~~W~H~~Cvg~ 48 (72)
T 1wee_A 16 KVDC-KCGTKDDDGERMLACD--GCGVWHHTRCIGI 48 (72)
T ss_dssp EECC-TTCCCSCCSSCEEECS--SSCEEEETTTTTC
T ss_pred ceEe-eCCCccCCCCcEEECC--CCCCccCCeeecc
Confidence 4678 79986 35 699999 8999999999843
No 70
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=82.27 E-value=0.43 Score=39.84 Aligned_cols=31 Identities=29% Similarity=0.727 Sum_probs=25.3
Q ss_pred CCcceeCCCC-CCceeecCCcCcc-cccchhhhh
Q 002388 827 IDVCCICRHK-HGICIKCNYGNCQ-TTFHPTCAR 858 (929)
Q Consensus 827 k~~C~iC~~~-~GacIqC~~~~C~-~~FH~~CA~ 858 (929)
...| +|++. .|.+|+|...+|. .+||..|.-
T Consensus 9 ~~yC-~C~~~~~g~mi~CD~~~C~~~wfH~~Cvg 41 (59)
T 3c6w_A 9 PTYC-LCHQVSYGEMIGCDNPDCPIEWFHFACVD 41 (59)
T ss_dssp CEET-TTTEECCSEEEECSCTTCSSCEEETGGGT
T ss_pred CcEE-ECCCCCCCCeeEeeCCCCCCCCEecccCC
Confidence 3556 89983 6899999966698 699999985
No 71
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=81.76 E-value=0.51 Score=40.72 Aligned_cols=30 Identities=23% Similarity=0.576 Sum_probs=25.3
Q ss_pred CcceeCCCC--CCceeecCCcCcccccchhhhhh
Q 002388 828 DVCCICRHK--HGICIKCNYGNCQTTFHPTCARS 859 (929)
Q Consensus 828 ~~C~iC~~~--~GacIqC~~~~C~~~FH~~CA~~ 859 (929)
..|.+|++. .+.+|+|. .|..+||..|.-.
T Consensus 19 ~~C~~C~~~~~~~~mi~CD--~C~~wfH~~Cv~~ 50 (75)
T 2k16_A 19 WICPGCNKPDDGSPMIGCD--DCDDWYHWPCVGI 50 (75)
T ss_dssp ECBTTTTBCCSSCCEEECS--SSSSEEEHHHHTC
T ss_pred cCCCCCCCCCCCCCEEEcC--CCCcccccccCCC
Confidence 579999986 34799999 8999999999843
No 72
>2l0k_A Stage III sporulation protein D; SPOIIID, solution structure, DNA binding, bacillus subti transcription factor, transcription; NMR {Bacillus subtilis}
Probab=81.42 E-value=0.87 Score=41.41 Aligned_cols=49 Identities=22% Similarity=0.332 Sum_probs=42.5
Q ss_pred HHHHHHHHhhCccccccchhhhccChhhhhhhccc--cccccchhHHHHHHh
Q 002388 222 TLILKKLIDRGKVNVKDIASDIGISPDLLKTTLAD--GTFASDLQCKLVKWL 271 (929)
Q Consensus 222 ~~~l~kli~~gkv~v~d~~~~~gis~~~l~~~~~~--~~~~~~~~~k~~~wl 271 (929)
..|+..|.+.| ++++|||..+|+|..++--.|+. ..++++...+|.+.|
T Consensus 10 ~~I~~~l~~~~-~ti~dlA~~~gVS~~TVsR~L~~~~~~Vs~~tr~rV~~al 60 (93)
T 2l0k_A 10 IKIGKYIVETK-KTVRVIAKEFGVSKSTVHKDLTERLPEINPDLANEVKEIL 60 (93)
T ss_dssp HHHHHHHHHHC-CCHHHHHHHHTSCHHHHHHHHTTHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHcC-CCHHHHHHHHCCCHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 45777777777 99999999999999999999985 579999999998883
No 73
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=81.24 E-value=0.49 Score=39.91 Aligned_cols=32 Identities=28% Similarity=0.682 Sum_probs=25.6
Q ss_pred CCcceeCCCC-CCceeecCCcCcc-cccchhhhhh
Q 002388 827 IDVCCICRHK-HGICIKCNYGNCQ-TTFHPTCARS 859 (929)
Q Consensus 827 k~~C~iC~~~-~GacIqC~~~~C~-~~FH~~CA~~ 859 (929)
...| +|++. .|.+|+|...+|. .+||..|.-.
T Consensus 11 ~~yC-~C~~~~~g~MI~CD~c~C~~~WfH~~Cvgl 44 (62)
T 2g6q_A 11 PTYC-LCNQVSYGEMIGCDNEQCPIEWFHFSCVSL 44 (62)
T ss_dssp CEET-TTTEECCSEEEECSCTTCSSCEEETGGGTC
T ss_pred CcEE-ECCCCCCCCeeeeeCCCCCcccEecccCCc
Confidence 3566 99983 6899999965687 9999999853
No 74
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=80.39 E-value=0.92 Score=42.36 Aligned_cols=31 Identities=26% Similarity=0.711 Sum_probs=27.5
Q ss_pred CCcceeCCCCCCceeecCCcCcccccchhhhh
Q 002388 827 IDVCCICRHKHGICIKCNYGNCQTTFHPTCAR 858 (929)
Q Consensus 827 k~~C~iC~~~~GacIqC~~~~C~~~FH~~CA~ 858 (929)
...|.+|+. +|-+|.|....|..+||..|.-
T Consensus 15 ~~~C~~C~~-~G~ll~CD~~~Cp~~fH~~Cl~ 45 (107)
T 4gne_A 15 EDYCFQCGD-GGELVMCDKKDCPKAYHLLCLN 45 (107)
T ss_dssp CSSCTTTCC-CSEEEECCSTTCCCEECTGGGT
T ss_pred CCCCCcCCC-CCcEeEECCCCCCcccccccCc
Confidence 478999995 6999999988899999999984
No 75
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=79.77 E-value=0.62 Score=40.41 Aligned_cols=28 Identities=36% Similarity=0.971 Sum_probs=23.3
Q ss_pred cceeCCCC---CCceeecCCcCcccccchhhhh
Q 002388 829 VCCICRHK---HGICIKCNYGNCQTTFHPTCAR 858 (929)
Q Consensus 829 ~C~iC~~~---~GacIqC~~~~C~~~FH~~CA~ 858 (929)
.-++|++. .+.+|+|. .|..+||..|.-
T Consensus 11 ~yCiC~~~~~~~~~MI~Cd--~C~~WfH~~Cvg 41 (75)
T 3kqi_A 11 VYCVCRLPYDVTRFMIECD--ACKDWFHGSCVG 41 (75)
T ss_dssp EETTTTEECCTTSCEEECT--TTCCEEEHHHHT
T ss_pred eEEECCCcCCCCCCEEEcC--CCCCCEeccccc
Confidence 34489875 46899999 799999999983
No 76
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Probab=79.77 E-value=0.85 Score=53.09 Aligned_cols=37 Identities=16% Similarity=0.351 Sum_probs=31.2
Q ss_pred CCCEEEecccCcccccccccCccCC---CCceeccccccc
Q 002388 718 LNPILICSGCKVAVHLDCYRNAKES---TGPWYCELCEEL 754 (929)
Q Consensus 718 ~N~Ll~Cd~C~vaVHq~CYGi~~~p---~g~WlCd~C~~~ 754 (929)
+..+|.||.|.-=+|-.|.|+.... .+.|+|..|...
T Consensus 55 ~~~mI~CD~C~~WfH~~CVgi~~~~a~~~~~y~Cp~C~~~ 94 (528)
T 3pur_A 55 DFQWIGCDSCQTWYHFLCSGLEQFEYYLYEKFFCPKCVPH 94 (528)
T ss_dssp TTSEEECTTTCCEEEGGGTTCCGGGTTTEEECCCTTTHHH
T ss_pred CCCEEECCCCCcCCCCcCCCCChhHhcCCCeEECcCCcCC
Confidence 3479999999999999999988643 367999999764
No 77
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=79.11 E-value=0.72 Score=37.28 Aligned_cols=28 Identities=21% Similarity=0.582 Sum_probs=23.5
Q ss_pred cceeCCCC---CCceeecCCcCcccccchhhh
Q 002388 829 VCCICRHK---HGICIKCNYGNCQTTFHPTCA 857 (929)
Q Consensus 829 ~C~iC~~~---~GacIqC~~~~C~~~FH~~CA 857 (929)
.|.+|+++ .+.+|+|.. .|..+||..|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~-~C~~WfH~~Cv 34 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDG-GCDEWFHQVCV 34 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTT-TTCCEEETTTT
T ss_pred cCCCCcCccCCCCcEEEeCC-CCCccCccccc
Confidence 47788886 356999996 79999999997
No 78
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=78.41 E-value=1.9 Score=32.77 Aligned_cols=31 Identities=19% Similarity=0.336 Sum_probs=25.3
Q ss_pred HHHHHHhhCccccccchhhhccChhhhhhhcc
Q 002388 224 ILKKLIDRGKVNVKDIASDIGISPDLLKTTLA 255 (929)
Q Consensus 224 ~l~kli~~gkv~v~d~~~~~gis~~~l~~~~~ 255 (929)
.+.+|+++| .++.+||.++|||..++...|.
T Consensus 13 ~i~~l~~~g-~s~~~ia~~lgvs~~Tv~r~l~ 43 (52)
T 1jko_C 13 QISRLLEKG-HPRQQLAIIFGIGVSTLYRYFP 43 (52)
T ss_dssp HHHHHHHTT-CCHHHHHHTTSCCHHHHHHHSC
T ss_pred HHHHHHHcC-CCHHHHHHHHCCCHHHHHHHHH
Confidence 344567888 8999999999999998876664
No 79
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=78.22 E-value=0.7 Score=38.59 Aligned_cols=31 Identities=29% Similarity=0.724 Sum_probs=25.0
Q ss_pred CCcceeCCCC-CCceeecCCcCcc-cccchhhhh
Q 002388 827 IDVCCICRHK-HGICIKCNYGNCQ-TTFHPTCAR 858 (929)
Q Consensus 827 k~~C~iC~~~-~GacIqC~~~~C~-~~FH~~CA~ 858 (929)
...| +|++. .|.+|.|...+|. .+||..|.-
T Consensus 10 ~~~C-~C~~~~~g~mi~CD~cdC~~~wfH~~Cvg 42 (60)
T 2vnf_A 10 PTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVG 42 (60)
T ss_dssp CEET-TTTEECCSEEEECSCTTCSSCEEETGGGT
T ss_pred CCEE-ECCCcCCCCEEEeCCCCCCCceEehhcCC
Confidence 3556 89983 6899999965588 799999985
No 80
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=78.20 E-value=0.77 Score=42.55 Aligned_cols=29 Identities=34% Similarity=0.782 Sum_probs=25.5
Q ss_pred CcceeCCCC---CCceeecCCcCcccccchhhh
Q 002388 828 DVCCICRHK---HGICIKCNYGNCQTTFHPTCA 857 (929)
Q Consensus 828 ~~C~iC~~~---~GacIqC~~~~C~~~FH~~CA 857 (929)
..|.+|++. .|.+|+|. ..|..|||..|.
T Consensus 4 ~~C~iC~~p~~~~~~mi~Cd-d~C~~WfH~~CV 35 (105)
T 2xb1_A 4 YPCGACRSEVNDDQDAILCE-ASCQKWFHRECT 35 (105)
T ss_dssp CBCTTTCSBCCTTSCEEECT-TTTCCEEEGGGT
T ss_pred CCCCCCCCccCCCCCEEEec-CCcccccccccC
Confidence 469999987 67899998 589999999997
No 81
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=77.70 E-value=0.61 Score=46.20 Aligned_cols=28 Identities=32% Similarity=0.831 Sum_probs=24.5
Q ss_pred CCcceeCCCC---CCceeecCCcCcccccchhhh
Q 002388 827 IDVCCICRHK---HGICIKCNYGNCQTTFHPTCA 857 (929)
Q Consensus 827 k~~C~iC~~~---~GacIqC~~~~C~~~FH~~CA 857 (929)
...| +|++. .|.+|+|. .|..|||..|.
T Consensus 8 ~~~C-~C~~~~~~~~~mi~Cd--~C~~WfH~~Cv 38 (174)
T 2ri7_A 8 KLYC-ICKTPEDESKFYIGCD--RCQNWYHGRCV 38 (174)
T ss_dssp CEET-TTTEECCTTSCEEECT--TTCCEEEHHHH
T ss_pred CcEe-eCCCCCCCCCCEeECC--CCCchhChhhc
Confidence 3678 99985 57899999 89999999998
No 82
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=77.64 E-value=0.76 Score=37.09 Aligned_cols=26 Identities=38% Similarity=0.926 Sum_probs=22.0
Q ss_pred eeCCCC--CCceeecCCcCcccccchhhhh
Q 002388 831 CICRHK--HGICIKCNYGNCQTTFHPTCAR 858 (929)
Q Consensus 831 ~iC~~~--~GacIqC~~~~C~~~FH~~CA~ 858 (929)
++|++. ++.+|+|. .|..+||..|.-
T Consensus 7 C~C~~~~~~~~MI~Cd--~C~~W~H~~Cvg 34 (52)
T 3o7a_A 7 CFCMKPFAGRPMIECN--ECHTWIHLSCAK 34 (52)
T ss_dssp STTCCBCTTCCEEECT--TTCCEEETTTTT
T ss_pred EEeCCcCCCCCEEEcC--CCCccccccccC
Confidence 468875 56999999 799999999984
No 83
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=77.50 E-value=0.92 Score=44.88 Aligned_cols=48 Identities=25% Similarity=0.603 Sum_probs=39.3
Q ss_pred CcCcccCCCC-CCCCCEEEecccCcccccccccCccCCCCceeccccccc
Q 002388 706 RSCDICRRSE-TILNPILICSGCKVAVHLDCYRNAKESTGPWYCELCEEL 754 (929)
Q Consensus 706 ~~CsVC~~~E-~~~N~Ll~Cd~C~vaVHq~CYGi~~~p~g~WlCd~C~~~ 754 (929)
..|.+|...- ...|.-..|..|...|=+.| |+....+..|+|..|...
T Consensus 69 ~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C-~~~~~~~~~W~C~vC~k~ 117 (153)
T 2zet_C 69 THCARCLQPYRLLLNSRRQCLECSLFVCKSC-SHAHPEEQGWLCDPCHLA 117 (153)
T ss_dssp TBCTTTCCBGGGCSSCCEECTTTCCEECGGG-EECCSSSSSCEEHHHHHH
T ss_pred ccchhhcCccccccCCCCcCCCCCchhhccc-ccccCCCCcEeeHHHHHH
Confidence 5699999874 45788899999999999999 444445788999999765
No 84
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=77.23 E-value=0.89 Score=37.70 Aligned_cols=48 Identities=23% Similarity=0.598 Sum_probs=34.3
Q ss_pred CCcceeCCCCCCceeecCCcCcccccchhhhhhcCceEEEeeCCCcceeeeccccccch
Q 002388 827 IDVCCICRHKHGICIKCNYGNCQTTFHPTCARSAGFYLNVKSTGGNFQHKAYCEKHSLE 885 (929)
Q Consensus 827 k~~C~iC~~~~GacIqC~~~~C~~~FH~~CA~~aGl~~~~k~~~g~~~~~ayC~kHs~~ 885 (929)
...|.+|+.. |.+|.|. .|..+||..|....--.+ ..+. -||+.....
T Consensus 5 ~~~C~vC~~~-g~ll~Cd--~C~~~fH~~Cl~ppl~~~----p~g~----W~C~~C~~~ 52 (60)
T 2puy_A 5 EDFCSVCRKS-GQLLMCD--TCSRVYHLDCLDPPLKTI----PKGM----WICPRCQDQ 52 (60)
T ss_dssp CSSCTTTCCC-SSCEECS--SSSCEECGGGSSSCCSSC----CCSC----CCCHHHHHH
T ss_pred CCCCcCCCCC-CcEEEcC--CCCcCEECCcCCCCcCCC----CCCc----eEChhccCh
Confidence 3679999984 8999999 999999999986421111 1233 388887543
No 85
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=77.11 E-value=0.95 Score=37.82 Aligned_cols=30 Identities=30% Similarity=0.842 Sum_probs=26.8
Q ss_pred CCcceeCCCCCCceeecCCcCcccccchhhhhh
Q 002388 827 IDVCCICRHKHGICIKCNYGNCQTTFHPTCARS 859 (929)
Q Consensus 827 k~~C~iC~~~~GacIqC~~~~C~~~FH~~CA~~ 859 (929)
...|.+|+. .|.+|.|. .|..+||..|...
T Consensus 11 ~~~C~vC~~-~g~ll~CD--~C~~~fH~~Cl~p 40 (61)
T 2l5u_A 11 QDYCEVCQQ-GGEIILCD--TCPRAYHMVCLDP 40 (61)
T ss_dssp CSSCTTTSC-CSSEEECS--SSSCEEEHHHHCT
T ss_pred CCCCccCCC-CCcEEECC--CCChhhhhhccCC
Confidence 478999998 58999999 8999999999865
No 86
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=77.07 E-value=2.4 Score=34.24 Aligned_cols=53 Identities=13% Similarity=0.090 Sum_probs=39.7
Q ss_pred hHHHHHHHHHhhCccccccchhhhccChhhhhhhccccccccchhHHHHHHhh
Q 002388 220 NFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLADGTFASDLQCKLVKWLS 272 (929)
Q Consensus 220 ~~~~~l~kli~~gkv~v~d~~~~~gis~~~l~~~~~~~~~~~~~~~k~~~wl~ 272 (929)
+|+..||++..+-.++.+++|..+|||+.+|..-.......+..-.+|.++|.
T Consensus 1 ~~~~~l~~~r~~~glsq~~lA~~~gis~~~i~~~e~g~~~~~~~l~~la~~l~ 53 (69)
T 1r69_A 1 SISSRVKSKRIQLGLNQAELAQKVGTTQQSIEQLENGKTKRPRFLPELASALG 53 (69)
T ss_dssp CHHHHHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHTTSCSSCTTHHHHHHHTT
T ss_pred CHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCchHHHHHHHHHC
Confidence 36778999999999999999999999999998877643333333455555553
No 87
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=76.79 E-value=1.2 Score=36.51 Aligned_cols=30 Identities=30% Similarity=0.924 Sum_probs=26.6
Q ss_pred CCcceeCCCCCCceeecCCcCcccccchhhhhh
Q 002388 827 IDVCCICRHKHGICIKCNYGNCQTTFHPTCARS 859 (929)
Q Consensus 827 k~~C~iC~~~~GacIqC~~~~C~~~FH~~CA~~ 859 (929)
...|.+|+.. |.+|.|. .|..+||..|...
T Consensus 9 ~~~C~vC~~~-g~ll~Cd--~C~~~~H~~Cl~p 38 (56)
T 2yql_A 9 EDFCSVCRKS-GQLLMCD--TCSRVYHLDCLDP 38 (56)
T ss_dssp CCSCSSSCCS-SCCEECS--SSSCEECSSSSSS
T ss_pred CCCCccCCCC-CeEEEcC--CCCcceECccCCC
Confidence 4789999985 8999999 9999999999864
No 88
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=76.61 E-value=0.95 Score=36.13 Aligned_cols=29 Identities=38% Similarity=0.919 Sum_probs=24.7
Q ss_pred cceeCCCC--CCceeecCCcCcccccchhhhhh
Q 002388 829 VCCICRHK--HGICIKCNYGNCQTTFHPTCARS 859 (929)
Q Consensus 829 ~C~iC~~~--~GacIqC~~~~C~~~FH~~CA~~ 859 (929)
.|.+|++. .+.+|.|. +|..+||..|...
T Consensus 2 ~C~vC~~~~~~~~ll~Cd--~C~~~~H~~Cl~p 32 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCD--ECNKAFHLFCLRP 32 (51)
T ss_dssp CCTTTCCSSCCSCCEECT--TTCCEECHHHHCT
T ss_pred CCCCCCCCCCCCCEEECC--CCChhhCcccCCC
Confidence 58899975 45799999 8999999999854
No 89
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=76.52 E-value=2.3 Score=35.30 Aligned_cols=54 Identities=13% Similarity=0.120 Sum_probs=43.6
Q ss_pred chHHHHHHHHHhhCccccccchhhhccChhhhhhhcccc--ccccchhHHHHHHhh
Q 002388 219 LNFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLADG--TFASDLQCKLVKWLS 272 (929)
Q Consensus 219 ~~~~~~l~kli~~gkv~v~d~~~~~gis~~~l~~~~~~~--~~~~~~~~k~~~wl~ 272 (929)
..|+..|+++..+-..+..++|..+|||+.+|..-.... ..+.+.-.+|.+.|.
T Consensus 6 ~~~~~~l~~~r~~~g~sq~~lA~~~gis~~~i~~~e~g~~~~~~~~~l~~ia~~l~ 61 (78)
T 3b7h_A 6 EFVSEHLMELITQQNLTINRVATLAGLNQSTVNAMFEGRSKRPTITTIRKVCGTLG 61 (78)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHCTTCCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCCHHHHHHHHHHcC
Confidence 468889999999999999999999999999998877633 355555667777664
No 90
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=76.40 E-value=1.2 Score=37.92 Aligned_cols=30 Identities=23% Similarity=0.637 Sum_probs=26.1
Q ss_pred CCcceeCCCCCCceeecCCcCcccccchhhhhh
Q 002388 827 IDVCCICRHKHGICIKCNYGNCQTTFHPTCARS 859 (929)
Q Consensus 827 k~~C~iC~~~~GacIqC~~~~C~~~FH~~CA~~ 859 (929)
...|.+|+. .|.+|.|. .|...||..|...
T Consensus 12 ~~~C~vC~~-~~~ll~Cd--~C~~~~H~~Cl~P 41 (66)
T 2lri_C 12 GARCGVCGD-GTDVLRCT--HCAAAFHWRCHFP 41 (66)
T ss_dssp TCCCTTTSC-CTTCEECS--SSCCEECHHHHCT
T ss_pred CCCcCCCCC-CCeEEECC--CCCCceecccCCC
Confidence 467999997 58899999 8999999999854
No 91
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=76.23 E-value=1.4 Score=37.33 Aligned_cols=49 Identities=14% Similarity=0.216 Sum_probs=40.6
Q ss_pred cccccchhhhccChhhhhhhccc-c---ccccchhHHHHHHhhhccccccccc
Q 002388 234 VNVKDIASDIGISPDLLKTTLAD-G---TFASDLQCKLVKWLSNHAYLGGLLK 282 (929)
Q Consensus 234 v~v~d~~~~~gis~~~l~~~~~~-~---~~~~~~~~k~~~wl~~~~~~~~~~~ 282 (929)
++++|||..+|+|+-++--.|+. . .++++...+|.+.++..-|.+....
T Consensus 1 ~T~~diA~~aGVS~sTVSrvLng~~~~~~vs~et~~rI~~aa~~lgY~pn~~a 53 (65)
T 1uxc_A 1 MKLDEIARLAGVSRTTASYVINGKAKQYRVSDKTVEKVMAVVREHNYHPNAVA 53 (65)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHTCTTTTTCTTHHHHHHHHHHHHHTCCCC---
T ss_pred CCHHHHHHHHCcCHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHhCCCccHHH
Confidence 46899999999999999999984 3 6899999999999998888665443
No 92
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=75.79 E-value=1.3 Score=37.44 Aligned_cols=30 Identities=37% Similarity=0.906 Sum_probs=26.5
Q ss_pred CCcceeCCCCCCceeecCCcCcccccchhhhhh
Q 002388 827 IDVCCICRHKHGICIKCNYGNCQTTFHPTCARS 859 (929)
Q Consensus 827 k~~C~iC~~~~GacIqC~~~~C~~~FH~~CA~~ 859 (929)
...|.+|+. .|.+|.|. .|..+||..|...
T Consensus 8 ~~~C~vC~~-~g~ll~CD--~C~~~fH~~Cl~p 37 (66)
T 1xwh_A 8 EDECAVCRD-GGELICCD--GCPRAFHLACLSP 37 (66)
T ss_dssp CCSBSSSSC-CSSCEECS--SCCCEECTTTSSS
T ss_pred CCCCccCCC-CCCEEEcC--CCChhhcccccCC
Confidence 478999997 48999999 8999999999864
No 93
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=74.69 E-value=0.89 Score=42.22 Aligned_cols=37 Identities=24% Similarity=0.547 Sum_probs=28.2
Q ss_pred CCCEEEecccCcccccccccCcc------CCCCceeccccccc
Q 002388 718 LNPILICSGCKVAVHLDCYRNAK------ESTGPWYCELCEEL 754 (929)
Q Consensus 718 ~N~Ll~Cd~C~vaVHq~CYGi~~------~p~g~WlCd~C~~~ 754 (929)
...|+.|+.|.-.||..|.++.. ...+.|.|..|...
T Consensus 72 ~~~m~~C~~C~~~~H~~C~~~~~~~~~~~~~~~~~~C~~C~~~ 114 (117)
T 4bbq_A 72 EKKLMECCICNEIVHPGCLQMDGEGLLNEELPNCWECPKCYQE 114 (117)
T ss_dssp GGSCEEETTTCCEECGGGCCSCCCCEECSSSSSEEECTTTC--
T ss_pred CcceEEeeecCCeEECCCCCCCccccccccCCCCeECCCCcCC
Confidence 45699999999999999998652 12346999999754
No 94
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=74.65 E-value=1.2 Score=40.46 Aligned_cols=30 Identities=30% Similarity=0.727 Sum_probs=24.5
Q ss_pred CCcceeCCC-CCCceeecCCcCcc-cccchhhh
Q 002388 827 IDVCCICRH-KHGICIKCNYGNCQ-TTFHPTCA 857 (929)
Q Consensus 827 k~~C~iC~~-~~GacIqC~~~~C~-~~FH~~CA 857 (929)
...| +|++ ..|.+|.|...+|. .+||..|.
T Consensus 26 ~~yC-iC~~~~~g~MI~CD~c~C~~eWfH~~CV 57 (90)
T 2jmi_A 26 EVYC-FCRNVSYGPMVACDNPACPFEWFHYGCV 57 (90)
T ss_dssp SCCS-TTTCCCSSSEECCCSSSCSCSCEETTTS
T ss_pred CcEE-EeCCCCCCCEEEecCCCCccccCcCccC
Confidence 4667 9998 37899999955566 79999998
No 95
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=74.42 E-value=3.1 Score=33.78 Aligned_cols=52 Identities=17% Similarity=0.114 Sum_probs=40.3
Q ss_pred hHHHHHHHHHhhCccccccchhhhccChhhhhhhccccccccchhHHHHHHh
Q 002388 220 NFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLADGTFASDLQCKLVKWL 271 (929)
Q Consensus 220 ~~~~~l~kli~~gkv~v~d~~~~~gis~~~l~~~~~~~~~~~~~~~k~~~wl 271 (929)
.|...||++..+-.++..|+|..+|||+.+|..-.......++.-.+|.+.|
T Consensus 3 ~~~~~l~~~r~~~glsq~~lA~~~gis~~~i~~~e~g~~~~~~~l~~i~~~l 54 (71)
T 1zug_A 3 TLSERLKKRRIALKMTQTELATKAGVKQQSIQLIEAGVTKRPRFLFEIAMAL 54 (71)
T ss_dssp SHHHHHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHTTCCSSCSTHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcCCCCChHHHHHHHHHH
Confidence 3678899999998999999999999999999887764444455545555544
No 96
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=74.09 E-value=1.2 Score=37.89 Aligned_cols=29 Identities=34% Similarity=0.760 Sum_probs=25.0
Q ss_pred CcceeCCCC---CCceeecCCcCcccccchhhh
Q 002388 828 DVCCICRHK---HGICIKCNYGNCQTTFHPTCA 857 (929)
Q Consensus 828 ~~C~iC~~~---~GacIqC~~~~C~~~FH~~CA 857 (929)
..|.+|++. ...+|+|.. .|..+||..|.
T Consensus 9 ~~C~~C~~p~~~~~~mI~CD~-~C~~WfH~~Cv 40 (65)
T 2vpb_A 9 YPCGICTNEVNDDQDAILCEA-SCQKWFHRICT 40 (65)
T ss_dssp CBCTTTCSBCCTTSCEEEBTT-TTCCEEEHHHH
T ss_pred CcCccCCCccCCCCCeEeccc-CccccCchhcc
Confidence 579999986 346999994 89999999997
No 97
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=73.28 E-value=2.5 Score=33.92 Aligned_cols=52 Identities=12% Similarity=0.008 Sum_probs=39.6
Q ss_pred hHHHHHHHHHhhCccccccchhhhccChhhhhhhccc-cccccchhHHHHHHh
Q 002388 220 NFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLAD-GTFASDLQCKLVKWL 271 (929)
Q Consensus 220 ~~~~~l~kli~~gkv~v~d~~~~~gis~~~l~~~~~~-~~~~~~~~~k~~~wl 271 (929)
.|+..||++..+-.++..++|..+|||+.+|..-... .....+.-.+|.+.|
T Consensus 5 ~~~~~l~~~r~~~g~s~~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~i~~~l 57 (68)
T 2r1j_L 5 LMGERIRARRKKLKIRQAALGKMVGVSNVAISQWERSETEPNGENLLALSKAL 57 (68)
T ss_dssp CHHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHTTSSCCBHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 4778899999998899999999999999999877652 333444445565554
No 98
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=71.91 E-value=2.2 Score=36.86 Aligned_cols=32 Identities=25% Similarity=0.653 Sum_probs=27.2
Q ss_pred CCcceeCCCCC----CceeecCCcCcccccchhhhhhc
Q 002388 827 IDVCCICRHKH----GICIKCNYGNCQTTFHPTCARSA 860 (929)
Q Consensus 827 k~~C~iC~~~~----GacIqC~~~~C~~~FH~~CA~~a 860 (929)
...|.+|+... +.+|.|. .|..+||..|.-..
T Consensus 16 ~~~C~vC~~~~s~~~~~ll~CD--~C~~~~H~~Cl~~~ 51 (71)
T 2ku3_A 16 DAVCSICMDGESQNSNVILFCD--MCNLAVHQECYGVP 51 (71)
T ss_dssp SCSCSSSCCCCCCSSSCEEECS--SSCCEEEHHHHTCS
T ss_pred CCCCCCCCCCCCCCCCCEEECC--CCCCccccccCCCC
Confidence 47899999753 6899999 99999999998554
No 99
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=71.42 E-value=2.1 Score=35.87 Aligned_cols=31 Identities=26% Similarity=0.778 Sum_probs=26.9
Q ss_pred CCcceeCCCC----CCceeecCCcCcccccchhhhhh
Q 002388 827 IDVCCICRHK----HGICIKCNYGNCQTTFHPTCARS 859 (929)
Q Consensus 827 k~~C~iC~~~----~GacIqC~~~~C~~~FH~~CA~~ 859 (929)
...|.+|+.. .+.+|.|. .|..+||..|...
T Consensus 6 ~~~C~vC~~~~~~~~~~ll~Cd--~C~~~~H~~C~~p 40 (66)
T 2yt5_A 6 SGVCTICQEEYSEAPNEMVICD--KCGQGYHQLCHTP 40 (66)
T ss_dssp CCCBSSSCCCCCBTTBCEEECS--SSCCEEETTTSSS
T ss_pred CCCCCCCCCCCCCCCCCEEECC--CCChHHHhhhCCC
Confidence 4689999975 38999999 9999999999854
No 100
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=71.41 E-value=3 Score=31.03 Aligned_cols=33 Identities=15% Similarity=0.139 Sum_probs=24.5
Q ss_pred HHHHHHHHHhhCccccccchhhhccChhhhhhhc
Q 002388 221 FTLILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (929)
Q Consensus 221 ~~~~l~kli~~gkv~v~d~~~~~gis~~~l~~~~ 254 (929)
....+..|..+| .++++||..+|||..++...+
T Consensus 10 ~~~~i~~~~~~g-~s~~~IA~~lgis~~Tv~~~~ 42 (51)
T 1tc3_C 10 ERAQLDVMKLLN-VSLHEMSRKISRSRHCIRVYL 42 (51)
T ss_dssp HHHHHHHHHHTT-CCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHHcC-CCHHHHHHHHCcCHHHHHHHH
Confidence 333344566777 699999999999998876544
No 101
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=71.32 E-value=2.9 Score=34.44 Aligned_cols=53 Identities=11% Similarity=0.023 Sum_probs=40.7
Q ss_pred hHHHHHHHHHhhCccccccchhhhccChhhhhhhcc-ccccccchhHHHHHHhh
Q 002388 220 NFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLA-DGTFASDLQCKLVKWLS 272 (929)
Q Consensus 220 ~~~~~l~kli~~gkv~v~d~~~~~gis~~~l~~~~~-~~~~~~~~~~k~~~wl~ 272 (929)
.|+..||++..+-.++..++|..+|||+.+|..-.. ....+.+.-.+|.+.|.
T Consensus 5 ~~~~~l~~~r~~~gls~~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~ia~~l~ 58 (76)
T 1adr_A 5 LMGERIRARRKKLKIRQAALGKMVGVSNVAISQWERSETEPNGENLLALSKALQ 58 (76)
T ss_dssp CHHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHTTSSCCCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHC
Confidence 478889999998889999999999999999987775 23334455556665553
No 102
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=71.07 E-value=3.6 Score=33.64 Aligned_cols=54 Identities=15% Similarity=0.091 Sum_probs=41.5
Q ss_pred chHHHHHHHHHhhCccccccchhhhccChhhhhhhcc-ccccccchhHHHHHHhh
Q 002388 219 LNFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLA-DGTFASDLQCKLVKWLS 272 (929)
Q Consensus 219 ~~~~~~l~kli~~gkv~v~d~~~~~gis~~~l~~~~~-~~~~~~~~~~k~~~wl~ 272 (929)
..|+..||++...-.++..++|..+|||+.+|..-.. ....+.+.-.+|.+.|.
T Consensus 12 ~~~~~~l~~~r~~~g~s~~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~l~~~l~ 66 (74)
T 1y7y_A 12 VKFGQRLRELRTAKGLSQETLAFLSGLDRSYVGGVERGQRNVSLVNILKLATALD 66 (74)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTCSCCBHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHCCCCCCCHHHHHHHHHHhC
Confidence 3578889999999999999999999999999987765 33344455556665554
No 103
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=70.94 E-value=1.6 Score=36.41 Aligned_cols=30 Identities=23% Similarity=0.899 Sum_probs=26.3
Q ss_pred CCcceeCCCCCCceeecCCcCcccccchhhhhh
Q 002388 827 IDVCCICRHKHGICIKCNYGNCQTTFHPTCARS 859 (929)
Q Consensus 827 k~~C~iC~~~~GacIqC~~~~C~~~FH~~CA~~ 859 (929)
...|.+|+. .|.+|.|. .|...||..|...
T Consensus 9 ~~~C~vC~~-~g~ll~Cd--~C~~~fH~~Cl~p 38 (61)
T 1mm2_A 9 MEFCRVCKD-GGELLCCD--TCPSSYHIHCLNP 38 (61)
T ss_dssp CSSCTTTCC-CSSCBCCS--SSCCCBCSSSSSS
T ss_pred CCcCCCCCC-CCCEEEcC--CCCHHHcccccCC
Confidence 468999997 58999999 8999999999864
No 104
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=70.89 E-value=2.9 Score=33.35 Aligned_cols=49 Identities=16% Similarity=0.212 Sum_probs=37.4
Q ss_pred HHHHHHhhCccccccchhhhccChhhhhhhcc-ccccccchhHHHHHHhh
Q 002388 224 ILKKLIDRGKVNVKDIASDIGISPDLLKTTLA-DGTFASDLQCKLVKWLS 272 (929)
Q Consensus 224 ~l~kli~~gkv~v~d~~~~~gis~~~l~~~~~-~~~~~~~~~~k~~~wl~ 272 (929)
.||++..+-.++.+++|..+|||+.+|..-.. ......+.-.+|.+.|.
T Consensus 5 ~l~~~r~~~g~s~~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~i~~~l~ 54 (66)
T 2xi8_A 5 NLKLIREKKKISQSELAALLEVSRQTINGIEKNKYNPSLQLALKIAYYLN 54 (66)
T ss_dssp CHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHTTSCCCCHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHC
Confidence 36788888889999999999999999988776 33444555566766664
No 105
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=70.58 E-value=3.3 Score=36.10 Aligned_cols=57 Identities=16% Similarity=0.278 Sum_probs=44.5
Q ss_pred CCcchHHHHHHHHHhhCccccccchhhhccChhhhhhhcc-ccccccchhHHHHHHhh
Q 002388 216 SDALNFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLA-DGTFASDLQCKLVKWLS 272 (929)
Q Consensus 216 ~~s~~~~~~l~kli~~gkv~v~d~~~~~gis~~~l~~~~~-~~~~~~~~~~k~~~wl~ 272 (929)
.+...+.-.|+++++.-.++..|+|..+|||+.+|..-+. ....+.+.-.+|.+.|.
T Consensus 4 ~~~~~~g~~l~~~r~~~gltq~~lA~~~gis~~~is~~e~g~~~~~~~~~~~i~~~l~ 61 (94)
T 2ict_A 4 ANHPRPGDIIQESLDELNVSLREFARAMEIAPSTASRLLTGKAALTPEMAIKLSVVIG 61 (94)
T ss_dssp TTCCCHHHHHHHHHHHHTCCHHHHHHHHTCCHHHHHHHHHTSSCCCHHHHHHHHHHTC
T ss_pred CCCCChhHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHHC
Confidence 3455688899999999899999999999999999987776 33455566667766554
No 106
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=70.12 E-value=3.2 Score=36.85 Aligned_cols=64 Identities=13% Similarity=0.152 Sum_probs=47.2
Q ss_pred CCCCCCCCCCCCcchHHHHHHHHHhhCccccccchhhhccChhhhhhhccccccccchhHHHHHHhh
Q 002388 206 DRSEFEDVNPSDALNFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLADGTFASDLQCKLVKWLS 272 (929)
Q Consensus 206 ~~~~~~~~~~~~s~~~~~~l~kli~~gkv~v~d~~~~~gis~~~l~~~~~~~~~~~~~~~k~~~wl~ 272 (929)
++.++.+++|.-+.+ -||+|..+-..+..++|..+|||+.+|..-......+.+.-.||-+.|.
T Consensus 13 ~~~~~~~~~M~i~~~---rLk~lR~~~glTq~eLA~~~GiS~~tis~iE~G~~~s~~~l~kIa~~L~ 76 (88)
T 3t76_A 13 GRENLYFQGMRVSYN---KLWKLLIDRDMKKGELREAVGVSKSTFAKLGKNENVSLTVLLAICEYLN 76 (88)
T ss_dssp -CCCCSCCCEEEECH---HHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTCCCCHHHHHHHHHHHT
T ss_pred CccchhhccccHHHH---HHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCcCHHHHHHHHHHHC
Confidence 456666777754433 5677777777899999999999999998877654556666777877775
No 107
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=69.30 E-value=3 Score=34.97 Aligned_cols=53 Identities=17% Similarity=0.082 Sum_probs=40.0
Q ss_pred hHHHHHHHHHhhCccccccchhhhccChhhhhhhcc-ccccccchhHHHHHHhh
Q 002388 220 NFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLA-DGTFASDLQCKLVKWLS 272 (929)
Q Consensus 220 ~~~~~l~kli~~gkv~v~d~~~~~gis~~~l~~~~~-~~~~~~~~~~k~~~wl~ 272 (929)
+|+..||++..+-..+.+++|..+|||..+|..-.. ....+.+.-.+|.+.|.
T Consensus 2 ~~~~~lk~~r~~~glsq~~lA~~~gis~~~i~~~e~g~~~p~~~~l~~ia~~l~ 55 (77)
T 2k9q_A 2 ELSNELKVERIRLSLTAKSVAEEMGISRQQLCNIEQSETAPVVVKYIAFLRSKG 55 (77)
T ss_dssp CHHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHTCCSCCHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhC
Confidence 467789999999999999999999999999877665 22334455556665553
No 108
>3rsn_A SET1/ASH2 histone methyltransferase complex subun; PHD domain, winged helix domain, binding, transcription; 2.10A {Homo sapiens} PDB: 3s32_A
Probab=69.29 E-value=2.9 Score=42.37 Aligned_cols=49 Identities=8% Similarity=-0.025 Sum_probs=32.3
Q ss_pred eeCCCC---CCceeecCCcCcccccchhhhhhcCceEEEeeCCCcceeeeccccccch
Q 002388 831 CICRHK---HGICIKCNYGNCQTTFHPTCARSAGFYLNVKSTGGNFQHKAYCEKHSLE 885 (929)
Q Consensus 831 ~iC~~~---~GacIqC~~~~C~~~FH~~CA~~aGl~~~~k~~~g~~~~~ayC~kHs~~ 885 (929)
+||+.. .-.+++|. .|.++||..|-+...-.+ ..+...|.+.|..-++.
T Consensus 8 CYCG~~~~~~~~mLqC~--~C~qWFH~~Cl~~~~~~~----lp~~~fY~F~C~~C~~~ 59 (177)
T 3rsn_A 8 VDEENGRQLGEVELQCG--ICTKWFTADTFGIDTSSC----LPFMTNYSFHCNVCHHS 59 (177)
T ss_dssp ---CTTCCTTSCEEECT--TTCCEEEGGGGTCCCTTC----CTTCCSEEEECTTTSTT
T ss_pred EEcCCCCCCCceeEeec--cccceecHHHhcccccCc----cccceeEEEEccccCCC
Confidence 588874 44789999 899999999996432111 22344788888877653
No 109
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=68.95 E-value=4 Score=34.67 Aligned_cols=57 Identities=12% Similarity=0.118 Sum_probs=44.5
Q ss_pred CCcchHHHHHHHHHhhCccccccchhhhccChhhhhhhcc-ccccccchhHHHHHHhh
Q 002388 216 SDALNFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLA-DGTFASDLQCKLVKWLS 272 (929)
Q Consensus 216 ~~s~~~~~~l~kli~~gkv~v~d~~~~~gis~~~l~~~~~-~~~~~~~~~~k~~~wl~ 272 (929)
.+..+|+..||++..+-..+.+++|..+|||+.+|..-.. ......+.-.+|.+.|.
T Consensus 8 ~~~~~~~~~l~~~r~~~glsq~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~i~~~l~ 65 (88)
T 2wiu_B 8 YSPTQLANAMKLVRQQNGWTQSELAKKIGIKQATISNFENNPDNTTLTTFFKILQSLE 65 (88)
T ss_dssp CSHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHCGGGCBHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhC
Confidence 3456789999999999999999999999999999887775 34444455566666654
No 110
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=68.56 E-value=3.4 Score=34.01 Aligned_cols=52 Identities=13% Similarity=0.164 Sum_probs=39.9
Q ss_pred HHHHHHHHHhhCccccccchhhhccChhhhhhhcc-ccccccchhHHHHHHhh
Q 002388 221 FTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLA-DGTFASDLQCKLVKWLS 272 (929)
Q Consensus 221 ~~~~l~kli~~gkv~v~d~~~~~gis~~~l~~~~~-~~~~~~~~~~k~~~wl~ 272 (929)
|...||++.++-.++..++|..+|||+.+|..-.. ......+.-.+|.+.|.
T Consensus 11 ~~~~l~~~r~~~g~s~~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~ia~~l~ 63 (76)
T 3bs3_A 11 MLNRIKVVLAEKQRTNRWLAEQMGKSENTISRWCSNKSQPSLDMLVKVAELLN 63 (76)
T ss_dssp CCBCHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTSSCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHC
Confidence 34468888888889999999999999999988776 33444555567777664
No 111
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=68.26 E-value=2.8 Score=35.59 Aligned_cols=49 Identities=16% Similarity=0.206 Sum_probs=41.2
Q ss_pred ccccccchhhhccChhhhhhhcc-ccccccchhHHHHHHhhhcccccccc
Q 002388 233 KVNVKDIASDIGISPDLLKTTLA-DGTFASDLQCKLVKWLSNHAYLGGLL 281 (929)
Q Consensus 233 kv~v~d~~~~~gis~~~l~~~~~-~~~~~~~~~~k~~~wl~~~~~~~~~~ 281 (929)
+++++|||...|+|+-++--.|+ ....+++...+|.+.++..-|.+...
T Consensus 9 ~~t~~diA~~aGVS~sTVSr~ln~~~~vs~~t~~rV~~~a~~lgY~pn~~ 58 (67)
T 2l8n_A 9 AATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPM 58 (67)
T ss_dssp CCCHHHHHHHTTCCHHHHHHTTTCCCCSCHHHHHHHHHHHHHHCCCC---
T ss_pred CCCHHHHHHHHCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhCCCccHH
Confidence 58999999999999999999998 44689999999999999988866543
No 112
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=66.85 E-value=4.8 Score=33.18 Aligned_cols=53 Identities=19% Similarity=0.191 Sum_probs=40.5
Q ss_pred hHHHHHHHHHhhCccccccchhhhccChhhhhhhcc-ccccccchhHHHHHHhh
Q 002388 220 NFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLA-DGTFASDLQCKLVKWLS 272 (929)
Q Consensus 220 ~~~~~l~kli~~gkv~v~d~~~~~gis~~~l~~~~~-~~~~~~~~~~k~~~wl~ 272 (929)
.|+..||++..+-..+..++|..+|||+.+|..-.. ....+.+.-.+|.+.|.
T Consensus 10 ~~~~~l~~~r~~~glsq~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~la~~l~ 63 (77)
T 2b5a_A 10 KFGRTLKKIRTQKGVSQEELADLAGLHRTYISEVERGDRNISLINIHKICAALD 63 (77)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTCSCCBHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHhC
Confidence 467789999988889999999999999999987775 23444455556666554
No 113
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=66.80 E-value=3.1 Score=36.45 Aligned_cols=51 Identities=27% Similarity=0.559 Sum_probs=31.6
Q ss_pred CCCcCcccCCCCCCCCCEE---EecccCcccccccccCccCCCCceeccccccc
Q 002388 704 HPRSCDICRRSETILNPIL---ICSGCKVAVHLDCYRNAKESTGPWYCELCEEL 754 (929)
Q Consensus 704 ~d~~CsVC~~~E~~~N~Ll---~Cd~C~vaVHq~CYGi~~~p~g~WlCd~C~~~ 754 (929)
....|.||++....++.++ .|.+..-.||+.|.-.=....+...|..|+..
T Consensus 14 ~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~ 67 (80)
T 2d8s_A 14 SQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYE 67 (80)
T ss_dssp TSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCB
T ss_pred CCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCe
Confidence 4467999997554456665 23334589999997321111234578888765
No 114
>4b6d_A RAC GTPase-activating protein 1; signaling protein, cytokinesis, plasma membrane, phospholipi centralspindlin, spindle midzone, central spindle; 2.20A {Homo sapiens}
Probab=66.55 E-value=2.4 Score=35.59 Aligned_cols=34 Identities=29% Similarity=0.647 Sum_probs=26.9
Q ss_pred CCcCcccCCCCCCCCCEEEecccCcccccccccC
Q 002388 705 PRSCDICRRSETILNPILICSGCKVAVHLDCYRN 738 (929)
Q Consensus 705 d~~CsVC~~~E~~~N~Ll~Cd~C~vaVHq~CYGi 738 (929)
...|++|.+.-..+.+.+.|..|++.+|..|-..
T Consensus 19 ~~~C~~Cg~~i~~gkq~~kC~dC~~~cH~~C~~~ 52 (61)
T 4b6d_A 19 PESCVPCGKRIKFGKLSLKCRDCRVVSHPECRDR 52 (61)
T ss_dssp CEECTTTCCEECTTCEEEEESSSSCEECGGGGGG
T ss_pred CcccccccCEEEEeeEeeECCCCCCeEchhHhhc
Confidence 4789999654333568899999999999999643
No 115
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=65.86 E-value=2.6 Score=36.21 Aligned_cols=32 Identities=19% Similarity=0.153 Sum_probs=28.2
Q ss_pred HHHHHHHhhCccccccchhhhccChhhhhhhc
Q 002388 223 LILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (929)
Q Consensus 223 ~~l~kli~~gkv~v~d~~~~~gis~~~l~~~~ 254 (929)
.||+-|.+.|.+++.|||..+|||+.++...|
T Consensus 4 ~Il~~L~~~~~~s~~eLa~~lgvs~~tv~r~L 35 (81)
T 2htj_A 4 EILEFLNRHNGGKTAEIAEALAVTDYQARYYL 35 (81)
T ss_dssp HHHHHHHHSCCCCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHH
Confidence 57788888899999999999999999887666
No 116
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=65.78 E-value=3.4 Score=35.58 Aligned_cols=31 Identities=29% Similarity=0.723 Sum_probs=24.1
Q ss_pred CcceeCCC-CCCceeecCCcCc-ccccchhhhhh
Q 002388 828 DVCCICRH-KHGICIKCNYGNC-QTTFHPTCARS 859 (929)
Q Consensus 828 ~~C~iC~~-~~GacIqC~~~~C-~~~FH~~CA~~ 859 (929)
..| +|++ ..|.+|+|...+| ..+||..|.-.
T Consensus 7 ~yC-~C~~~~~g~MI~CD~cdC~~~WfH~~Cvgl 39 (70)
T 1x4i_A 7 GYC-ICNQVSYGEMVGCDNQDCPIEWFHYGCVGL 39 (70)
T ss_dssp CCS-TTSCCCCSSEECCSCTTCSCCCEEHHHHTC
T ss_pred eEE-EcCCCCCCCEeEeCCCCCCccCCccccccc
Confidence 456 5887 4789999995556 48999999853
No 117
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=65.78 E-value=2.3 Score=36.58 Aligned_cols=28 Identities=25% Similarity=0.789 Sum_probs=24.2
Q ss_pred cceeCCCC--CCceeecCCcCcccccchhhhh
Q 002388 829 VCCICRHK--HGICIKCNYGNCQTTFHPTCAR 858 (929)
Q Consensus 829 ~C~iC~~~--~GacIqC~~~~C~~~FH~~CA~ 858 (929)
.|.+|++. .|.+|.|. .|...||..|..
T Consensus 20 ~C~~C~~~~~~~~ll~CD--~C~~~yH~~Cl~ 49 (70)
T 3asl_A 20 ACHLCGGRQDPDKQLMCD--ECDMAFHIYCLD 49 (70)
T ss_dssp SBTTTCCCSCGGGEEECT--TTCCEEEGGGSS
T ss_pred CCcCCCCcCCCCCEEEcC--CCCCceecccCC
Confidence 57788863 78999999 999999999986
No 118
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=65.19 E-value=2 Score=38.63 Aligned_cols=35 Identities=26% Similarity=0.697 Sum_probs=30.6
Q ss_pred CcceeCCCC-CCceeecCCcCcccccchhhhhhcCceE
Q 002388 828 DVCCICRHK-HGICIKCNYGNCQTTFHPTCARSAGFYL 864 (929)
Q Consensus 828 ~~C~iC~~~-~GacIqC~~~~C~~~FH~~CA~~aGl~~ 864 (929)
..|.||++- .+..+.|. -|.+.||..|.++.|+.-
T Consensus 16 ~~C~VC~~~t~~~l~pCR--vC~RvfH~~CL~r~gy~~ 51 (89)
T 1wil_A 16 EMCDVCEVWTAESLFPCR--VCTRVFHDGCLRRMGYIQ 51 (89)
T ss_dssp CCCTTTCCCCSSCCSSCS--SSSSCCCHHHHHHHTSCC
T ss_pred cccCccccccccceeccc--cccccccHhhcccccccc
Confidence 689999973 67888999 899999999999988874
No 119
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=64.41 E-value=2.7 Score=37.60 Aligned_cols=54 Identities=19% Similarity=0.517 Sum_probs=35.7
Q ss_pred CCcceeCCCC----CCceeecCCcCcccccchhhhhhcCceEEEeeCCCcceeeeccccccchh
Q 002388 827 IDVCCICRHK----HGICIKCNYGNCQTTFHPTCARSAGFYLNVKSTGGNFQHKAYCEKHSLEQ 886 (929)
Q Consensus 827 k~~C~iC~~~----~GacIqC~~~~C~~~FH~~CA~~aGl~~~~k~~~g~~~~~ayC~kHs~~q 886 (929)
...|.+|+.. .+.+|.|. .|...||..|....--...+....+.| ||+......
T Consensus 16 ~~~C~vC~~~~~~~~~~ll~CD--~C~~~yH~~Cl~Ppl~~~~~~~p~g~W----~C~~C~~~~ 73 (88)
T 1wev_A 16 GLACVVCRQMTVASGNQLVECQ--ECHNLYHQDCHKPQVTDKEVNDPRLVW----YCARCTRQM 73 (88)
T ss_dssp CCSCSSSCCCCCCTTCCEEECS--SSCCEEETTTSSSCCCHHHHHCTTCCC----CCHHHHHHH
T ss_pred CCcCCCCCCCCCCCCCceEECC--CCCCeEcCccCCCcccccccCCCCCCe----eCccccchh
Confidence 4689999986 37899999 899999999975422110001122333 788776543
No 120
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=63.84 E-value=3.3 Score=36.27 Aligned_cols=33 Identities=30% Similarity=0.402 Sum_probs=26.2
Q ss_pred HHHHHHHHhh------CccccccchhhhccChhhhhhhc
Q 002388 222 TLILKKLIDR------GKVNVKDIASDIGISPDLLKTTL 254 (929)
Q Consensus 222 ~~~l~kli~~------gkv~v~d~~~~~gis~~~l~~~~ 254 (929)
..||.-|-+. |.++|.|||..+|||+.++..-|
T Consensus 7 ~~IL~~I~~~i~~~~g~~psv~EIa~~lgvS~~TVrr~L 45 (77)
T 2jt1_A 7 TKIISIVQERQNMDDGAPVKTRDIADAAGLSIYQVRLYL 45 (77)
T ss_dssp HHHHHHHHHHHHHHTTSCEEHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHHHhhccCCCcCHHHHHHHHCCCHHHHHHHH
Confidence 4455555555 99999999999999998887666
No 121
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=63.69 E-value=4.1 Score=39.36 Aligned_cols=49 Identities=22% Similarity=0.622 Sum_probs=38.4
Q ss_pred CcCcccCCCC-CCCCCEEEecccCcccccccccCcc--CCCCceeccccccc
Q 002388 706 RSCDICRRSE-TILNPILICSGCKVAVHLDCYRNAK--ESTGPWYCELCEEL 754 (929)
Q Consensus 706 ~~CsVC~~~E-~~~N~Ll~Cd~C~vaVHq~CYGi~~--~p~g~WlCd~C~~~ 754 (929)
..|.+|...- ...|.-..|..|...|=+.|-+... .....|+|..|...
T Consensus 56 ~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~~~~~~~~W~C~vC~k~ 107 (134)
T 1zbd_B 56 NRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLEQ 107 (134)
T ss_dssp SBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCCSSSSCCEEEHHHHHH
T ss_pred ccccccCCCcccccCCCCCCCCCCcccccccCCccCCCCCccceechhhHHH
Confidence 5699999876 3567889999999999999955332 23567999999765
No 122
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=63.35 E-value=4.8 Score=31.54 Aligned_cols=49 Identities=16% Similarity=0.300 Sum_probs=31.0
Q ss_pred CCCCcCcccCCCCCCCCCEEEecccCcccccccccCccCCCCceecccccc
Q 002388 703 EHPRSCDICRRSETILNPILICSGCKVAVHLDCYRNAKESTGPWYCELCEE 753 (929)
Q Consensus 703 e~d~~CsVC~~~E~~~N~Ll~Cd~C~vaVHq~CYGi~~~p~g~WlCd~C~~ 753 (929)
+++..|.||++.-..+...+.-..|+-.||..|...- ......|..|+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w--~~~~~~CP~Cr~ 51 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMW--LGSHSTCPLCRL 51 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHT--TTTCCSCSSSCC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHH--HHcCCcCcCCCC
Confidence 3457899999864434455666679999999997321 122335666643
No 123
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=63.07 E-value=6.1 Score=34.51 Aligned_cols=54 Identities=20% Similarity=0.220 Sum_probs=41.4
Q ss_pred chHHHHHHHHHhhCccccccchhhhccChhhhhhhcc-ccccccchhHHHHHHhh
Q 002388 219 LNFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLA-DGTFASDLQCKLVKWLS 272 (929)
Q Consensus 219 ~~~~~~l~kli~~gkv~v~d~~~~~gis~~~l~~~~~-~~~~~~~~~~k~~~wl~ 272 (929)
..|+-.||+|..+-.++..++|..+|||+.+|..-.. ....+.+.-.+|.+.|.
T Consensus 8 ~~~~~~lk~~r~~~glsq~~lA~~~gis~~~is~~e~G~~~p~~~~l~~ia~~l~ 62 (94)
T 2kpj_A 8 AIFSENLNSYIAKSEKTQLEIAKSIGVSPQTFNTWCKGIAIPRMGKVQALADYFN 62 (94)
T ss_dssp HHHHHHHHHHHTTSSSCHHHHHHHHTCCHHHHHHHHTTSCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHhCCCCCCHHHHHHHHHHHC
Confidence 3578889999999999999999999999999877665 23334455566666664
No 124
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=62.90 E-value=4.2 Score=37.58 Aligned_cols=83 Identities=13% Similarity=0.189 Sum_probs=47.1
Q ss_pred CcCcccCCCCCCCCCEEEecccCcccccccccCccCCCCceecccccccccCCCCCCCCCCccCCCccccccccCCCC--
Q 002388 706 RSCDICRRSETILNPILICSGCKVAVHLDCYRNAKESTGPWYCELCEELLSSRSSGAPSVNFWEKPYFVAECSLCGGT-- 783 (929)
Q Consensus 706 ~~CsVC~~~E~~~N~Ll~Cd~C~vaVHq~CYGi~~~p~g~WlCd~C~~~~~~~~s~~~~~~~~~~p~~~~~C~LCp~~-- 783 (929)
..|.+|.+. .|+.|....|..|+|. ..|.|..|....-... .+... ..-..|..|+.-
T Consensus 8 ~~C~~C~~~--------~C~~C~~c~~~~~~~~-----~~~~~~~c~~~~~~~~----~~~~~---~~c~~c~~c~~c~~ 67 (117)
T 4bbq_A 8 RKCKACVQG--------ECGVCHYCRDMKKFGG-----PGRMKQSCVLRQCLAP----RLPHS---VTCSLCGEVDQNEE 67 (117)
T ss_dssp SCSHHHHSC--------CCSCSHHHHHSGGGTS-----CCCSCCCCGGGCCSSC----BCCTT---CBCTTTCCBCCHHH
T ss_pred CcCcCcCCc--------CCCCCCCCcCCcccCC-----CCccccchhheeeccc----ccccc---ccccccCccccccc
Confidence 457777763 2999999999988763 4699999976532211 01110 012233333321
Q ss_pred ----CC-ceeeccCcchhhhccccccccce
Q 002388 784 ----TG-AFRKSANGQWVHAFCAEWVFEST 808 (929)
Q Consensus 784 ----gG-aLK~T~~g~WVHv~CAlw~pev~ 808 (929)
.. +|.-..-..|+|..|.-...+..
T Consensus 68 ~~~~~~~m~~C~~C~~~~H~~C~~~~~~~~ 97 (117)
T 4bbq_A 68 TQDFEKKLMECCICNEIVHPGCLQMDGEGL 97 (117)
T ss_dssp HCCGGGSCEEETTTCCEECGGGCCSCCCCE
T ss_pred ccccCcceEEeeecCCeEECCCCCCCcccc
Confidence 11 22334456899999987655444
No 125
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=62.73 E-value=2.9 Score=36.70 Aligned_cols=30 Identities=23% Similarity=0.729 Sum_probs=25.6
Q ss_pred CcceeCCCC--CCceeecCCcCcccccchhhhhh
Q 002388 828 DVCCICRHK--HGICIKCNYGNCQTTFHPTCARS 859 (929)
Q Consensus 828 ~~C~iC~~~--~GacIqC~~~~C~~~FH~~CA~~ 859 (929)
-.|.+|++. .|.+|.|. .|...||..|...
T Consensus 27 c~C~vC~~~~~~~~ll~CD--~C~~~yH~~Cl~P 58 (77)
T 2e6s_A 27 CSCRVCGGKHEPNMQLLCD--ECNVAYHIYCLNP 58 (77)
T ss_dssp SSCSSSCCCCCSTTEEECS--SSCCEEETTSSSS
T ss_pred CCCcCcCCcCCCCCEEEcC--CCCccccccccCC
Confidence 368899873 78999999 9999999999863
No 126
>1faq_A RAF-1; transferase, serine/threonine-protein kinase, proto- oncogene, zinc, ATP-binding, phorbol-ester binding; NMR {Homo sapiens} SCOP: g.49.1.1 PDB: 1far_A
Probab=62.31 E-value=5.1 Score=31.75 Aligned_cols=32 Identities=25% Similarity=0.514 Sum_probs=26.0
Q ss_pred CCcCcccCCCCCCCCCEEEecccCcccccccccCc
Q 002388 705 PRSCDICRRSETILNPILICSGCKVAVHLDCYRNA 739 (929)
Q Consensus 705 d~~CsVC~~~E~~~N~Ll~Cd~C~vaVHq~CYGi~ 739 (929)
...|++|...= -+-+.|..|++.+|..|....
T Consensus 14 pt~C~~C~~~l---~qG~~C~~C~~~~H~~C~~~v 45 (52)
T 1faq_A 14 LAFCDICQKFL---LNGFRCQTCGYKFHEHCSTKV 45 (52)
T ss_dssp CEECTTSSSEE---CSEEECTTTTCCBCSTTSSSS
T ss_pred CcCCCCccccc---ccCCEeCCCCCeEChhHHhhC
Confidence 47899997632 278999999999999998643
No 127
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=62.14 E-value=2.8 Score=42.55 Aligned_cols=28 Identities=21% Similarity=0.759 Sum_probs=23.8
Q ss_pred CcceeCCCC------CCceeecCCcCcccccchhhh
Q 002388 828 DVCCICRHK------HGICIKCNYGNCQTTFHPTCA 857 (929)
Q Consensus 828 ~~C~iC~~~------~GacIqC~~~~C~~~FH~~CA 857 (929)
..|.+|++. .+.+|+|. .|..+||..|.
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd--~C~~W~H~~Cv 36 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCG--KCDRWVHSKCE 36 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECT--TTCCEEEGGGS
T ss_pred CcCCCCcCccCCcccCCCeEECC--CCCcccchhcc
Confidence 469999985 23599999 99999999998
No 128
>3trb_A Virulence-associated protein I; mobIle and extrachromosomal element functions, DNA binding P; 2.00A {Coxiella burnetii}
Probab=61.70 E-value=7.3 Score=35.46 Aligned_cols=59 Identities=17% Similarity=0.250 Sum_probs=47.6
Q ss_pred CCcchHHHHHHH-HHhhCccccccchhhhccChhhhhhhcc-ccccccchhHHHHHHhhhc
Q 002388 216 SDALNFTLILKK-LIDRGKVNVKDIASDIGISPDLLKTTLA-DGTFASDLQCKLVKWLSNH 274 (929)
Q Consensus 216 ~~s~~~~~~l~k-li~~gkv~v~d~~~~~gis~~~l~~~~~-~~~~~~~~~~k~~~wl~~~ 274 (929)
.+...+.-+||+ |.++-.++..|+|..+|||+.+|-.-+. ...++++.-.||-+.|.-+
T Consensus 9 ~~~~~pG~~Lk~~lr~~~gltq~eLA~~lGis~~~is~ie~G~~~~s~~~~~kla~~lgvs 69 (104)
T 3trb_A 9 MRPIHPGEILAEELGFLDKMSANQLAKHLAIPTNRVTAILNGARSITADTALRLAKFFGTT 69 (104)
T ss_dssp CCCCCHHHHHHHHHHHTTSCCHHHHHHHHTSCHHHHHHHHTTSSCCCHHHHHHHHHHHTCC
T ss_pred CCCCCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHCcC
Confidence 345667889986 8888889999999999999999988887 4556777777887777544
No 129
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=61.25 E-value=11 Score=32.50 Aligned_cols=55 Identities=13% Similarity=0.172 Sum_probs=42.9
Q ss_pred chHHHHHHHHHhhCccccccchhhhccChhhhhhhcc-ccccccchhHHHHHHhhh
Q 002388 219 LNFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLA-DGTFASDLQCKLVKWLSN 273 (929)
Q Consensus 219 ~~~~~~l~kli~~gkv~v~d~~~~~gis~~~l~~~~~-~~~~~~~~~~k~~~wl~~ 273 (929)
..|+..||++..+-..+..|+|..+|||+.+|..-.. ......+.-.+|.+.|.-
T Consensus 12 ~~~~~~l~~~r~~~glsq~~lA~~~gis~~~is~~e~g~~~p~~~~l~~la~~l~v 67 (91)
T 1x57_A 12 LEVGKVIQQGRQSKGLTQKDLATKINEKPQVIADYESGRAIPNNQVLGKIERAIGL 67 (91)
T ss_dssp CHHHHHHHHHHHTTTCCHHHHHHHHTSCHHHHHHHHHTCSCCCHHHHHHHHHHHTB
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHCc
Confidence 4689999999999999999999999999999877665 333445555667666653
No 130
>3cec_A Putative antidote protein of plasmid maintenance; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.60A {Nostoc punctiforme}
Probab=60.75 E-value=6.7 Score=34.81 Aligned_cols=56 Identities=16% Similarity=0.315 Sum_probs=43.7
Q ss_pred CcchHHHHHHHHHhhCccccccchhhhccChhhhhhhcc-ccccccchhHHHHHHhh
Q 002388 217 DALNFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLA-DGTFASDLQCKLVKWLS 272 (929)
Q Consensus 217 ~s~~~~~~l~kli~~gkv~v~d~~~~~gis~~~l~~~~~-~~~~~~~~~~k~~~wl~ 272 (929)
+...+...|+++..+-.++.+|+|..+|||+.+|..-+. ....+.+.-.+|.+.|.
T Consensus 15 ~~~~~g~~l~~~r~~~gltq~~lA~~~gis~~~is~~e~g~~~~~~~~l~~l~~~l~ 71 (104)
T 3cec_A 15 RPIHPGEVIADILDDLDINTANFAEILGVSNQTIQEVINGQRSITVDIAIRLGKALG 71 (104)
T ss_dssp CCCCHHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHTTSSCCCHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCcCCCHHHHHHHHHHHC
Confidence 345778899999999889999999999999999988776 33455555566666554
No 131
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=60.63 E-value=4.8 Score=37.29 Aligned_cols=54 Identities=17% Similarity=0.145 Sum_probs=40.1
Q ss_pred HHHHHHHhhCccccccchhhhccChhhhhhhcc------------c-----cccccchhHHHHHHhhhccc
Q 002388 223 LILKKLIDRGKVNVKDIASDIGISPDLLKTTLA------------D-----GTFASDLQCKLVKWLSNHAY 276 (929)
Q Consensus 223 ~~l~kli~~gkv~v~d~~~~~gis~~~l~~~~~------------~-----~~~~~~~~~k~~~wl~~~~~ 276 (929)
-||.-|.+.|..++.|||..+|||+-++.-.|. + -.+.+.--..++.||.+++.
T Consensus 46 ~IL~~L~~~~~~s~~eLa~~l~is~stvs~~L~~L~~~Glv~~~~~gr~~~y~l~~~~~~~~~~~l~~~~~ 116 (122)
T 1u2w_A 46 KITYALCQDEELCVCDIANILGVTIANASHHLRTLYKQGVVNFRKEGKLALYSLGDEHIRQIMMIALAHKK 116 (122)
T ss_dssp HHHHHHHHSSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC----CCEEEESCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEECCEEEEEECHHHHHHHHHHHHHHhc
Confidence 477777778999999999999999998876664 1 12345555677777777654
No 132
>2ao9_A Phage protein; structural genomics, nine-fold NCS., PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.90A {Bacillus cereus} SCOP: a.4.1.17
Probab=60.61 E-value=5 Score=39.75 Aligned_cols=41 Identities=12% Similarity=0.190 Sum_probs=31.5
Q ss_pred ccccccchhhhccChhhhhh------hc-------------------------cccccccchhHHHHHHhhhc
Q 002388 233 KVNVKDIASDIGISPDLLKT------TL-------------------------ADGTFASDLQCKLVKWLSNH 274 (929)
Q Consensus 233 kv~v~d~~~~~gis~~~l~~------~~-------------------------~~~~~~~~~~~k~~~wl~~~ 274 (929)
.+++.+||.++|||..+|-. .+ ..-+-.|+++. ++-||+|+
T Consensus 48 ~lTv~eIA~~LGIS~~TLyrW~k~~p~~~~~l~~vad~~le~~~~e~~~~~~~~~k~~~p~~~A-~i~~LKn~ 119 (155)
T 2ao9_A 48 KRTQDEMANELGINRTTLWEWRTKNQDFIAFKSEVADSFLAEKREQVYSKLMQLILGPQPSVKA-MQLYMQRF 119 (155)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHSSSCCHHH-HHHHHHHT
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHH-HHHHHHHc
Confidence 68999999999999998865 21 01222788888 55999997
No 133
>1ptq_A Protein kinase C delta type; phosphotransferase; 1.95A {Mus musculus} SCOP: g.49.1.1 PDB: 1ptr_A*
Probab=60.48 E-value=5.7 Score=31.18 Aligned_cols=33 Identities=30% Similarity=0.654 Sum_probs=26.5
Q ss_pred CCcCcccCCCCC-CCCCEEEecccCccccccccc
Q 002388 705 PRSCDICRRSET-ILNPILICSGCKVAVHLDCYR 737 (929)
Q Consensus 705 d~~CsVC~~~E~-~~N~Ll~Cd~C~vaVHq~CYG 737 (929)
...|++|...=- ...+-+.|..|++.+|..|..
T Consensus 11 pt~C~~C~~~l~g~~~qg~~C~~C~~~~H~~C~~ 44 (50)
T 1ptq_A 11 PTFCDHCGSLLWGLVKQGLKCEDCGMNVHHKCRE 44 (50)
T ss_dssp CCBCTTTCCBCCSSSSCEEEETTTCCEECHHHHT
T ss_pred CCCcCCCCceeeccCCccCEeCCCCCeECHHHhh
Confidence 467999987432 246889999999999999975
No 134
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=60.44 E-value=4.7 Score=36.09 Aligned_cols=32 Identities=25% Similarity=0.653 Sum_probs=26.8
Q ss_pred CCcceeCCCCC----CceeecCCcCcccccchhhhhhc
Q 002388 827 IDVCCICRHKH----GICIKCNYGNCQTTFHPTCARSA 860 (929)
Q Consensus 827 k~~C~iC~~~~----GacIqC~~~~C~~~FH~~CA~~a 860 (929)
...|.+|+... +.+|.|. .|..+||..|....
T Consensus 25 ~~~C~vC~~~~s~~~~~ll~CD--~C~~~fH~~Cl~p~ 60 (88)
T 2l43_A 25 DAVCSICMDGESQNSNVILFCD--MCNLAVHQECYGVP 60 (88)
T ss_dssp CCCCSSCCSSSSCSEEEEEECS--SSCCCCCHHHHTCS
T ss_pred CCcCCcCCCCCCCCCCCEEECC--CCCchhhcccCCCC
Confidence 47899999742 3899999 99999999998654
No 135
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=60.42 E-value=5.2 Score=33.01 Aligned_cols=49 Identities=8% Similarity=-0.003 Sum_probs=39.1
Q ss_pred HHHHHHhhCccccccchhhhccChhhhhhhcc-ccccccchhHHHHHHhh
Q 002388 224 ILKKLIDRGKVNVKDIASDIGISPDLLKTTLA-DGTFASDLQCKLVKWLS 272 (929)
Q Consensus 224 ~l~kli~~gkv~v~d~~~~~gis~~~l~~~~~-~~~~~~~~~~k~~~wl~ 272 (929)
-||++..+-..+.+|+|..+|||+.+|..-.. ....+.+.-.+|.+.|.
T Consensus 12 ~l~~~r~~~glsq~~lA~~~gis~~~is~~e~g~~~~~~~~l~~ia~~l~ 61 (73)
T 3omt_A 12 RLKSVLAEKGKTNLWLTETLDKNKTTVSKWCTNDVQPSLETLFDIAEALN 61 (73)
T ss_dssp CHHHHHHHHTCCHHHHHHHTTCCHHHHHHHHTTSSCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHC
Confidence 37788877789999999999999999988776 34566666777777764
No 136
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=60.26 E-value=5.8 Score=33.41 Aligned_cols=52 Identities=23% Similarity=0.504 Sum_probs=35.9
Q ss_pred CCCCCcCcccCCCCCCCCCEEEecccCcccccccccCccCC--CCceecccccc
Q 002388 702 KEHPRSCDICRRSETILNPILICSGCKVAVHLDCYRNAKES--TGPWYCELCEE 753 (929)
Q Consensus 702 ke~d~~CsVC~~~E~~~N~Ll~Cd~C~vaVHq~CYGi~~~p--~g~WlCd~C~~ 753 (929)
+++...|.||......++---.|.-|++.+-..|-|-..+. ..-|.|..|+.
T Consensus 6 ~~d~~~C~iC~KTKFADG~Gh~C~yCk~r~CaRCGg~v~lr~~k~~WvC~lC~k 59 (62)
T 2a20_A 6 KGDAPTCGICHKTKFADGCGHNCSYCQTKFCARCGGRVSLRSNKVMWVCNLCRK 59 (62)
T ss_dssp SSCCCCCSSSSCSCCCSSCCEEBTTTCCEECTTSEEEEESSTTCEEEEEHHHHH
T ss_pred cCCcchhhhhccceeccCCCccccccCCeeecccCCEeeecCCeEEEEehhhhh
Confidence 34557899999876555555567777777777776544433 44699999964
No 137
>1nd9_A Translation initiation factor IF-2; NMR {Escherichia coli} SCOP: a.6.1.6
Probab=59.93 E-value=3.9 Score=31.71 Aligned_cols=23 Identities=26% Similarity=0.339 Sum_probs=20.3
Q ss_pred ccccccchhhhccChhhhhhhcc
Q 002388 233 KVNVKDIASDIGISPDLLKTTLA 255 (929)
Q Consensus 233 kv~v~d~~~~~gis~~~l~~~~~ 255 (929)
|+.|.++|.|+||+++.|...|.
T Consensus 2 k~rv~~lAkel~~~~k~l~~~l~ 24 (49)
T 1nd9_A 2 DVTIKTLAAERQTSVERLVQQFA 24 (49)
T ss_dssp EECTTHHHHHHSSSHHHHHHHHH
T ss_pred cccHHHHHHHHCcCHHHHHHHHH
Confidence 57899999999999999887774
No 138
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=59.93 E-value=5 Score=36.26 Aligned_cols=48 Identities=25% Similarity=0.603 Sum_probs=34.5
Q ss_pred CCcceeCCCCCCceeecCCcCcccccchhhhhhcCceEEEeeCCCcceeeeccccccch
Q 002388 827 IDVCCICRHKHGICIKCNYGNCQTTFHPTCARSAGFYLNVKSTGGNFQHKAYCEKHSLE 885 (929)
Q Consensus 827 k~~C~iC~~~~GacIqC~~~~C~~~FH~~CA~~aGl~~~~k~~~g~~~~~ayC~kHs~~ 885 (929)
...|.+|+.. |..|.|. .|...||..|....--.+ ..|.| ||+.....
T Consensus 25 ~~~C~vC~~~-g~LL~CD--~C~~~fH~~Cl~PpL~~~----P~g~W----~C~~C~~~ 72 (88)
T 1fp0_A 25 ATICRVCQKP-GDLVMCN--QCEFCFHLDCHLPALQDV----PGEEW----SCSLCHVL 72 (88)
T ss_dssp SSCCSSSCSS-SCCEECT--TSSCEECTTSSSTTCCCC----CSSSC----CCCSCCCC
T ss_pred CCcCcCcCCC-CCEEECC--CCCCceecccCCCCCCCC----cCCCc----CCccccCC
Confidence 4789999975 8899999 999999999985522111 12333 77777643
No 139
>3rsn_A SET1/ASH2 histone methyltransferase complex subun; PHD domain, winged helix domain, binding, transcription; 2.10A {Homo sapiens} PDB: 3s32_A
Probab=59.52 E-value=11 Score=38.23 Aligned_cols=70 Identities=14% Similarity=0.213 Sum_probs=43.3
Q ss_pred cCCCCCCCCCEEEecccCcccccccccCccCCCCceecccccccccCCCCCCCCCCccCCCccccccccCCCCC-Cceee
Q 002388 711 CRRSETILNPILICSGCKVAVHLDCYRNAKESTGPWYCELCEELLSSRSSGAPSVNFWEKPYFVAECSLCGGTT-GAFRK 789 (929)
Q Consensus 711 C~~~E~~~N~Ll~Cd~C~vaVHq~CYGi~~~p~g~WlCd~C~~~~~~~~s~~~~~~~~~~p~~~~~C~LCp~~g-GaLK~ 789 (929)
|+......-.+|+|.+|..-||..|.+....+ |... +. +....|..|...+ .-+++
T Consensus 10 CG~~~~~~~~mLqC~~C~qWFH~~Cl~~~~~~--------~lp~--------------~~-fY~F~C~~C~~~g~E~f~R 66 (177)
T 3rsn_A 10 EENGRQLGEVELQCGICTKWFTADTFGIDTSS--------CLPF--------------MT-NYSFHCNVCHHSGNTYFLR 66 (177)
T ss_dssp -CTTCCTTSCEEECTTTCCEEEGGGGTCCCTT--------CCTT--------------CC-SEEEECTTTSTTSSCEEEE
T ss_pred cCCCCCCCceeEeeccccceecHHHhcccccC--------cccc--------------ce-eEEEEccccCCCCcceeEe
Confidence 55433335579999999999999999744311 1110 00 1356778887655 44555
Q ss_pred ccCcchhhhc-ccccc
Q 002388 790 SANGQWVHAF-CAEWV 804 (929)
Q Consensus 790 T~~g~WVHv~-CAlw~ 804 (929)
. .-.|+|+. .|+++
T Consensus 67 ~-~~~w~~v~~laLyN 81 (177)
T 3rsn_A 67 K-QANLKEMCLSALAN 81 (177)
T ss_dssp C-CCCHHHHHHHHHHH
T ss_pred c-cCCHHHHHHHHHHh
Confidence 4 44699984 66666
No 140
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=59.41 E-value=5.6 Score=34.02 Aligned_cols=56 Identities=7% Similarity=0.161 Sum_probs=43.3
Q ss_pred cchHHHHHHHHHhhCccccccchhhhccChhhhhhhccccc--cccchhHHHHHHhhh
Q 002388 218 ALNFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLADGT--FASDLQCKLVKWLSN 273 (929)
Q Consensus 218 s~~~~~~l~kli~~gkv~v~d~~~~~gis~~~l~~~~~~~~--~~~~~~~k~~~wl~~ 273 (929)
...+...||++.++-..+..|+|..+|||+.+|..-..... ...+.-.+|.+.|.-
T Consensus 16 ~~~~~~~l~~~r~~~glsq~elA~~~gis~~~is~~e~g~~~~~~~~~l~~la~~l~~ 73 (83)
T 2a6c_A 16 RSQLLIVLQEHLRNSGLTQFKAAELLGVTQPRVSDLMRGKIDLFSLESLIDMITSIGL 73 (83)
T ss_dssp HHHHHHHHHHHHHTTTCCHHHHHHHHTSCHHHHHHHHTTCGGGCCHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCCHHHHHHHHHHcCC
Confidence 45677889999999999999999999999999988776332 445555677776653
No 141
>2jvl_A TRMBF1; coactivator, helix-turn-helix, Pro binding, transcription; NMR {Trichoderma reesei}
Probab=58.88 E-value=13 Score=33.47 Aligned_cols=57 Identities=9% Similarity=0.113 Sum_probs=41.1
Q ss_pred CCcchHHHHHHHHHh--hCccccccchhhhccChhhhhhhccc-cccccchhHHHHHHhh
Q 002388 216 SDALNFTLILKKLID--RGKVNVKDIASDIGISPDLLKTTLAD-GTFASDLQCKLVKWLS 272 (929)
Q Consensus 216 ~~s~~~~~~l~kli~--~gkv~v~d~~~~~gis~~~l~~~~~~-~~~~~~~~~k~~~wl~ 272 (929)
.-...|+..||+|.. .-.++..++|..+|||+.+|..-... .....+.-.+|.+.|.
T Consensus 30 ~~~~~~g~~lk~~R~~~~~glsq~elA~~~gis~~~is~~E~G~~~p~~~~l~~ia~~l~ 89 (107)
T 2jvl_A 30 TVGKEVGKAIEQGRQKFEPTMTQAELGKEIGETAATVASYERGTATPDQNILSKMERVLN 89 (107)
T ss_dssp CCCHHHHHHHHHHHTTSSSCCCHHHHHHHHTCCHHHHHHHTTTCSCCCHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHC
Confidence 334578999999998 88899999999999999988766642 2233344455555543
No 142
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=58.43 E-value=8.6 Score=31.16 Aligned_cols=53 Identities=6% Similarity=0.105 Sum_probs=40.1
Q ss_pred hHHHHHHHHHhhCccccccchhhhc--cChhhhhhhcc-ccccccchhHHHHHHhh
Q 002388 220 NFTLILKKLIDRGKVNVKDIASDIG--ISPDLLKTTLA-DGTFASDLQCKLVKWLS 272 (929)
Q Consensus 220 ~~~~~l~kli~~gkv~v~d~~~~~g--is~~~l~~~~~-~~~~~~~~~~k~~~wl~ 272 (929)
.|+..||++..+-..+.+++|..+| ||+.+|..-.. ....+.+.-.+|.+.|.
T Consensus 8 ~~g~~l~~~r~~~glsq~~lA~~~g~~is~~~i~~~e~g~~~~~~~~l~~la~~l~ 63 (71)
T 2ewt_A 8 QLGAKLRAIRTQQGLSLHGVEEKSQGRWKAVVVGSYERGDRAVTVQRLAELADFYG 63 (71)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHTTTSSCHHHHHHHHHTCSCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHCCcCCHHHHHHHHCCCCCCCHHHHHHHHHHHC
Confidence 4788899999998999999999999 99998876664 23344444556666554
No 143
>2yuu_A NPKC-delta, protein kinase C delta type; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=58.35 E-value=6.7 Score=34.45 Aligned_cols=35 Identities=23% Similarity=0.613 Sum_probs=27.5
Q ss_pred CCCcCcccCCCCC-CCCCEEEecccCcccccccccC
Q 002388 704 HPRSCDICRRSET-ILNPILICSGCKVAVHLDCYRN 738 (929)
Q Consensus 704 ~d~~CsVC~~~E~-~~N~Ll~Cd~C~vaVHq~CYGi 738 (929)
....|++|...=- ...+-+.|..|++.+|..|...
T Consensus 27 ~pt~C~~C~~~lwGl~kqg~~C~~C~~~~Hk~C~~~ 62 (83)
T 2yuu_A 27 QPTFCSVCKDFVWGLNKQGYKCRQCNAAIHKKCIDK 62 (83)
T ss_dssp SCCCCSSSCCCCCSSSCCEEEETTTCCEECTTGGGT
T ss_pred CCcChhhcChhhccccccccccCCcCCeeChhhhhh
Confidence 3477999987431 2357899999999999999864
No 144
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=58.01 E-value=5 Score=34.77 Aligned_cols=34 Identities=24% Similarity=0.231 Sum_probs=27.9
Q ss_pred HHHHHHHHhhCccccccchhhhccChhhhhhhcc
Q 002388 222 TLILKKLIDRGKVNVKDIASDIGISPDLLKTTLA 255 (929)
Q Consensus 222 ~~~l~kli~~gkv~v~d~~~~~gis~~~l~~~~~ 255 (929)
..||.-|-+.|.+++.|||..+|||+-++...|.
T Consensus 27 ~~il~~l~~~~~~s~~ela~~l~is~~tvs~~l~ 60 (99)
T 3cuo_A 27 LLILCMLSGSPGTSAGELTRITGLSASATSQHLA 60 (99)
T ss_dssp HHHHHHHTTCCSEEHHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHHHHHhCCCcCHHHHHHHHCcCHHHHHHHHH
Confidence 4567777676699999999999999998877664
No 145
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=57.90 E-value=8.6 Score=32.33 Aligned_cols=53 Identities=11% Similarity=0.132 Sum_probs=42.3
Q ss_pred hHHHHHHHHHhhCccccccchhhhccChhhhhhhcc-ccccccchhHHHHHHhh
Q 002388 220 NFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLA-DGTFASDLQCKLVKWLS 272 (929)
Q Consensus 220 ~~~~~l~kli~~gkv~v~d~~~~~gis~~~l~~~~~-~~~~~~~~~~k~~~wl~ 272 (929)
.|+..||++..+-..+.+++|..+|||+.+|..-.. ....+.+.-.+|.+.|.
T Consensus 11 ~~g~~lk~~R~~~glsq~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~ia~~l~ 64 (82)
T 3s8q_A 11 KVSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIERNSRNLTIKSLELIMKGLE 64 (82)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTCCCCBHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHhCcCHHHHHHHHCCCCCCCHHHHHHHHHHHC
Confidence 578889999998889999999999999999887765 34555566667766664
No 146
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=57.72 E-value=4.3 Score=36.52 Aligned_cols=33 Identities=24% Similarity=0.494 Sum_probs=29.7
Q ss_pred HHHHHHHHhhC-ccccccchhhhccChhhhhhhc
Q 002388 222 TLILKKLIDRG-KVNVKDIASDIGISPDLLKTTL 254 (929)
Q Consensus 222 ~~~l~kli~~g-kv~v~d~~~~~gis~~~l~~~~ 254 (929)
.-||..|+..| ++++.+||.++|||.-++..+|
T Consensus 21 l~Il~~l~~~g~~~s~~eLa~~lgvs~~tV~~~L 54 (110)
T 1q1h_A 21 IDVLRILLDKGTEMTDEEIANQLNIKVNDVRKKL 54 (110)
T ss_dssp HHHHHHHHHHCSCBCHHHHHHTTTSCHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHH
Confidence 45788888888 9999999999999999998887
No 147
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=56.48 E-value=3.3 Score=37.34 Aligned_cols=48 Identities=21% Similarity=0.511 Sum_probs=33.6
Q ss_pred CcceeCCCCC--CceeecCCcCcccccchhhhhhcCceEEEeeCCCcceeeeccccccch
Q 002388 828 DVCCICRHKH--GICIKCNYGNCQTTFHPTCARSAGFYLNVKSTGGNFQHKAYCEKHSLE 885 (929)
Q Consensus 828 ~~C~iC~~~~--GacIqC~~~~C~~~FH~~CA~~aGl~~~~k~~~g~~~~~ayC~kHs~~ 885 (929)
..|.+|+... +.+|.|. .|..+||..|....--.+ ..+.+ ||+.....
T Consensus 17 ~~C~vC~~~~~~~~ll~CD--~C~~~~H~~Cl~Ppl~~~----P~g~W----~C~~C~~~ 66 (92)
T 2e6r_A 17 YICQVCSRGDEDDKLLFCD--GCDDNYHIFCLLPPLPEI----PRGIW----RCPKCILA 66 (92)
T ss_dssp CCCSSSCCSGGGGGCEECT--TTCCEECSSSSSSCCSSC----CSSCC----CCHHHHHH
T ss_pred CCCccCCCcCCCCCEEEcC--CCCchhccccCCCCcccC----CCCCc----CCccCcCc
Confidence 5799999862 4699999 899999999986322111 12333 88887543
No 148
>2enn_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=56.36 E-value=6.2 Score=34.26 Aligned_cols=35 Identities=23% Similarity=0.601 Sum_probs=27.5
Q ss_pred CCCcCcccCCCCC-CCCCEEEecccCcccccccccC
Q 002388 704 HPRSCDICRRSET-ILNPILICSGCKVAVHLDCYRN 738 (929)
Q Consensus 704 ~d~~CsVC~~~E~-~~N~Ll~Cd~C~vaVHq~CYGi 738 (929)
....|++|...=- ...+-+.|..|++.||..|...
T Consensus 33 ~pt~C~~C~~~lwGl~kqG~~C~~C~~~~Hk~C~~~ 68 (77)
T 2enn_A 33 QPTFCSVCHEFVWGLNKQGYQCRQCNAAIHKKCIDK 68 (77)
T ss_dssp SCEECSSSCCEECCTTCCEEECSSSCCEEESGGGSS
T ss_pred CCcCccccChhhccccccccCcCCCCCcCCHhHHhh
Confidence 3478999987431 2468899999999999999864
No 149
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=56.05 E-value=8.5 Score=31.12 Aligned_cols=35 Identities=11% Similarity=0.131 Sum_probs=26.3
Q ss_pred CcchHHHHHHHHHhhCccc----cccchhhhccChhhhhh
Q 002388 217 DALNFTLILKKLIDRGKVN----VKDIASDIGISPDLLKT 252 (929)
Q Consensus 217 ~s~~~~~~l~kli~~gkv~----v~d~~~~~gis~~~l~~ 252 (929)
=|.+|-+-...+++.|. + +.+||.++|||+.+|..
T Consensus 6 ys~efK~~~~~~~~~g~-s~~~~~~~vA~~~gIs~~tl~~ 44 (59)
T 2glo_A 6 FTPHFKLQVLESYRNDN-DCKGNQRATARKYNIHRRQIQK 44 (59)
T ss_dssp CCHHHHHHHHHHHHHCT-TTTTCHHHHHHHTTSCHHHHHH
T ss_pred CCHHHHHHHHHHHHcCC-CcchHHHHHHHHHCcCHHHHHH
Confidence 35566655567777775 7 99999999999877653
No 150
>2enz_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=55.64 E-value=8.2 Score=32.25 Aligned_cols=35 Identities=26% Similarity=0.564 Sum_probs=27.3
Q ss_pred CCCcCcccCCCCC-CCCCEEEecccCcccccccccC
Q 002388 704 HPRSCDICRRSET-ILNPILICSGCKVAVHLDCYRN 738 (929)
Q Consensus 704 ~d~~CsVC~~~E~-~~N~Ll~Cd~C~vaVHq~CYGi 738 (929)
....|++|...=- ...+-+.|..|++.+|..|...
T Consensus 22 ~pt~C~~C~~~l~Gl~~qg~~C~~C~~~~Hk~C~~~ 57 (65)
T 2enz_A 22 SPTFCEHCGTLLWGLARQGLKCDACGMNVHHRCQTK 57 (65)
T ss_dssp SCCBCSSSCCBCCCSSSCSEEESSSCCEECTTTTTT
T ss_pred CCcCchhcChhheecCCcccccCCCCCccCHhHHhh
Confidence 3478999987431 2357899999999999999853
No 151
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=55.37 E-value=9.1 Score=32.24 Aligned_cols=54 Identities=13% Similarity=0.156 Sum_probs=42.0
Q ss_pred chHHHHHHHHHhhCccccccchhhhccChhhhhhhcc-ccccccchhHHHHHHhh
Q 002388 219 LNFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLA-DGTFASDLQCKLVKWLS 272 (929)
Q Consensus 219 ~~~~~~l~kli~~gkv~v~d~~~~~gis~~~l~~~~~-~~~~~~~~~~k~~~wl~ 272 (929)
..|.-.||++..+-..+.+++|..+|||+.++..-.. ......+.-.+|.+.|.
T Consensus 11 ~~l~~~l~~~r~~~gltq~~lA~~~gvs~~~is~~e~g~~~~~~~~~~~ia~~l~ 65 (80)
T 3kz3_A 11 RRLKAIWEKKKNELGLSYESVADKMGMGQSAVAALFNGINALNAYNAALLAKILK 65 (80)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHTTSCHHHHHHHHTTSSCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHhCcCHHHHHHHHcCCCCCCHHHHHHHHHHhC
Confidence 4577888988888889999999999999999887775 33345566666766665
No 152
>3uej_A NPKC-delta, protein kinase C delta type; proteine kinase cdelta, phosphotransferase, anesthetic bindi metal binding protein; 1.30A {Mus musculus} PDB: 3ugi_A 3ugl_A 3uey_A 3ugd_A 3uff_A 1ptq_A 1ptr_A*
Probab=55.10 E-value=6 Score=33.07 Aligned_cols=34 Identities=29% Similarity=0.643 Sum_probs=26.9
Q ss_pred CCcCcccCCCCC-CCCCEEEecccCcccccccccC
Q 002388 705 PRSCDICRRSET-ILNPILICSGCKVAVHLDCYRN 738 (929)
Q Consensus 705 d~~CsVC~~~E~-~~N~Ll~Cd~C~vaVHq~CYGi 738 (929)
...|++|.+.=. ...+-+.|..|++.+|..|...
T Consensus 20 pt~C~~C~~~l~Gl~~qg~~C~~C~~~~Hk~C~~~ 54 (65)
T 3uej_A 20 PTFCDHCGSLLWGLVKQGLKCEDCGMNVHHKCREK 54 (65)
T ss_dssp CCBCTTTCCBCCSSSSCEEEETTTCCEECHHHHTT
T ss_pred CCcccccChhhhccCceeeECCCCCCeEchhHhhh
Confidence 477999987431 2357899999999999999853
No 153
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=55.05 E-value=6.8 Score=30.79 Aligned_cols=32 Identities=25% Similarity=0.414 Sum_probs=25.0
Q ss_pred HHHHHHHHhhCccccccchhhhccChhhhhhhc
Q 002388 222 TLILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (929)
Q Consensus 222 ~~~l~kli~~gkv~v~d~~~~~gis~~~l~~~~ 254 (929)
...+..|..+|. ++++||.++|||+-++...+
T Consensus 21 ~~~i~~l~~~g~-s~~eIA~~lgis~~TV~~~l 52 (55)
T 2x48_A 21 VSVAHELAKMGY-TVQQIANALGVSERKVRRYL 52 (55)
T ss_dssp HHHHHHHHHTTC-CHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHcCC-CHHHHHHHHCcCHHHHHHHH
Confidence 344556677775 99999999999999887654
No 154
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=55.03 E-value=3.8 Score=40.96 Aligned_cols=29 Identities=31% Similarity=0.899 Sum_probs=25.1
Q ss_pred CcceeCCCCCCceeecCCcCcccccchhhhhh
Q 002388 828 DVCCICRHKHGICIKCNYGNCQTTFHPTCARS 859 (929)
Q Consensus 828 ~~C~iC~~~~GacIqC~~~~C~~~FH~~CA~~ 859 (929)
..|.+|+. +|..+.|. .|..+||..|...
T Consensus 5 ~~C~~C~~-~g~ll~Cd--~C~~~~H~~C~~p 33 (184)
T 3o36_A 5 DWCAVCQN-GGELLCCE--KCPKVFHLSCHVP 33 (184)
T ss_dssp SSCTTTCC-CSSCEECS--SSSCEECTTTSSS
T ss_pred CccccCCC-CCeeeecC--CCCcccCccccCC
Confidence 57999997 48899999 8999999999744
No 155
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=54.93 E-value=5.3 Score=35.09 Aligned_cols=32 Identities=25% Similarity=0.367 Sum_probs=26.8
Q ss_pred HHHHHHHhhCccccccchhhhccChhhhhhhcc
Q 002388 223 LILKKLIDRGKVNVKDIASDIGISPDLLKTTLA 255 (929)
Q Consensus 223 ~~l~kli~~gkv~v~d~~~~~gis~~~l~~~~~ 255 (929)
.||.-|.+ |.+++.|||.++|||+-++...|.
T Consensus 27 ~Il~~L~~-~~~~~~ela~~l~is~~tvs~~L~ 58 (98)
T 3jth_A 27 QILCMLHN-QELSVGELCAKLQLSQSALSQHLA 58 (98)
T ss_dssp HHHHHTTT-SCEEHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHhc-CCCCHHHHHHHHCcCHHHHHHHHH
Confidence 46666665 999999999999999998877664
No 156
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=54.72 E-value=11 Score=31.55 Aligned_cols=54 Identities=15% Similarity=0.150 Sum_probs=40.4
Q ss_pred chHHHHHHHHHhhCccccccchhhhccChhhhhhhccccccccchh--HHHHHHhhh
Q 002388 219 LNFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLADGTFASDLQ--CKLVKWLSN 273 (929)
Q Consensus 219 ~~~~~~l~kli~~gkv~v~d~~~~~gis~~~l~~~~~~~~~~~~~~--~k~~~wl~~ 273 (929)
..|+..||++..+-..+..++|..+|||+.+|..-... .-.|.+. .+|++.|..
T Consensus 9 ~~~~~~l~~~r~~~glsq~~lA~~~gis~~~i~~~e~g-~~~~~~~~l~~~~~~l~~ 64 (84)
T 2ef8_A 9 RCLVQLLTKLRKEASLSQSELAIFLGLSQSDISKIESF-ERRLDALELFELLEVVAS 64 (84)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTT-SSCCBHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcC-CCCCCHHHHHHHHHHHcc
Confidence 45788999999999999999999999999998776652 2334433 556555543
No 157
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=54.28 E-value=5.5 Score=35.10 Aligned_cols=33 Identities=24% Similarity=0.386 Sum_probs=29.2
Q ss_pred HHHHHHHHhhC---ccccccchhhhccChhhhhhhc
Q 002388 222 TLILKKLIDRG---KVNVKDIASDIGISPDLLKTTL 254 (929)
Q Consensus 222 ~~~l~kli~~g---kv~v~d~~~~~gis~~~l~~~~ 254 (929)
.-||+-|.+.| .+++.+||.++|||.-++...|
T Consensus 13 ~~IL~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~~L 48 (81)
T 1qbj_A 13 QRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVL 48 (81)
T ss_dssp HHHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHH
Confidence 34788888999 9999999999999998888877
No 158
>2fnf_X Putative RAS effector NORE1; zinc, signal transduction, apoptosis, cysteine rich domain; NMR {Mus musculus}
Probab=54.20 E-value=6.7 Score=33.83 Aligned_cols=32 Identities=38% Similarity=0.872 Sum_probs=26.6
Q ss_pred CCCcCcccCCCCCCCCCEEEecccCccccccccc
Q 002388 704 HPRSCDICRRSETILNPILICSGCKVAVHLDCYR 737 (929)
Q Consensus 704 ~d~~CsVC~~~E~~~N~Ll~Cd~C~vaVHq~CYG 737 (929)
....|+.|...= ..+-+.|..|++.+|..|..
T Consensus 34 ~pt~C~~C~~~l--~~qG~kC~~C~~~cHkkC~~ 65 (72)
T 2fnf_X 34 GPGWCDLCGREV--LRQALRCANCKFTCHSECRS 65 (72)
T ss_dssp SCCBCTTTSSBC--SSCCEECTTSSCEECTGGGG
T ss_pred CCcchhhhhHHH--HhCcCccCCCCCeechhhhc
Confidence 347799998743 56778999999999999985
No 159
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=54.07 E-value=4.6 Score=35.65 Aligned_cols=34 Identities=18% Similarity=0.294 Sum_probs=30.1
Q ss_pred HHHHHHHHhhCccccccchhhhccChh-hhhhhcc
Q 002388 222 TLILKKLIDRGKVNVKDIASDIGISPD-LLKTTLA 255 (929)
Q Consensus 222 ~~~l~kli~~gkv~v~d~~~~~gis~~-~l~~~~~ 255 (929)
..||.-|-.+|.+++++||.++||++. .+...|.
T Consensus 14 ~~IL~~Lk~~g~~ta~eiA~~Lgit~~~aVr~hL~ 48 (79)
T 1xmk_A 14 EKICDYLFNVSDSSALNLAKNIGLTKARDINAVLI 48 (79)
T ss_dssp HHHHHHHHHTCCEEHHHHHHHHCGGGHHHHHHHHH
T ss_pred HHHHHHHHHcCCcCHHHHHHHcCCCcHHHHHHHHH
Confidence 467788888999999999999999999 8888774
No 160
>2eby_A Putative HTH-type transcriptional regulator YBAQ; hypothetical protein, JW0472, structural genomics, NPPSFA; 2.25A {Escherichia coli}
Probab=54.05 E-value=8.3 Score=34.67 Aligned_cols=56 Identities=9% Similarity=0.199 Sum_probs=43.4
Q ss_pred CcchHHHHHHH-HHhhCccccccchhhhccChhhhhhhcc-ccccccchhHHHHHHhh
Q 002388 217 DALNFTLILKK-LIDRGKVNVKDIASDIGISPDLLKTTLA-DGTFASDLQCKLVKWLS 272 (929)
Q Consensus 217 ~s~~~~~~l~k-li~~gkv~v~d~~~~~gis~~~l~~~~~-~~~~~~~~~~k~~~wl~ 272 (929)
+...++..|++ |...-..+..++|..+|||+.+|..-.. ....+.+.-.+|.+.|.
T Consensus 7 ~~~~~g~~l~~~~r~~~glsq~~lA~~~gis~~~is~~e~g~~~~~~~~l~~la~~l~ 64 (113)
T 2eby_A 7 KPTTPGDILLYEYLEPLDLKINELAELLHVHRNSVSALINNNRKLTTEMAFRLAKVFD 64 (113)
T ss_dssp CCCCHHHHHHHHTTTTTTCCHHHHHHHHTSCHHHHHHHHTTSSCCCHHHHHHHHHHHT
T ss_pred CCCChHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHC
Confidence 34568889998 8888889999999999999999987775 33355555667766664
No 161
>4a0z_A Transcription factor FAPR; lipid homeostasis; HET: MLC; 1.90A {Staphylococcus aureus} PDB: 4a0y_A 4a0x_A* 4a12_A
Probab=53.64 E-value=5.8 Score=40.20 Aligned_cols=45 Identities=7% Similarity=0.056 Sum_probs=36.5
Q ss_pred HHHHHHHHHhhCccccccchhhhccChhhhhhhccccccccchhHH
Q 002388 221 FTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLADGTFASDLQCK 266 (929)
Q Consensus 221 ~~~~l~kli~~gkv~v~d~~~~~gis~~~l~~~~~~~~~~~~~~~k 266 (929)
-..||+.|-..|.|+|.|+|.++|+|.+|+.--|.+-.- |+|--.
T Consensus 14 ~~~i~~~l~~~~~~~~~~la~~~~vs~~TiRrDl~eL~~-~~l~~r 58 (190)
T 4a0z_A 14 REAIRQQIDSNPFITDHELSDLFQVSIQTIRLDRTYLNI-PELRKR 58 (190)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHTC-CCHHHH
T ss_pred HHHHHHHHHHCCCEeHHHHHHHHCCCHHHHHHHHHHhcC-cchhhH
Confidence 478999999999999999999999999999988863322 555433
No 162
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=53.09 E-value=6.3 Score=35.72 Aligned_cols=32 Identities=28% Similarity=0.381 Sum_probs=26.6
Q ss_pred HHHHHHHhhCccccccchhhhccChhhhhhhcc
Q 002388 223 LILKKLIDRGKVNVKDIASDIGISPDLLKTTLA 255 (929)
Q Consensus 223 ~~l~kli~~gkv~v~d~~~~~gis~~~l~~~~~ 255 (929)
.||.-|. .|.++++|||..+|||+-++...|.
T Consensus 29 ~IL~~L~-~~~~s~~eLa~~lgis~stvs~~L~ 60 (108)
T 2kko_A 29 QILDLLA-QGERAVEAIATATGMNLTTASANLQ 60 (108)
T ss_dssp HHHHHHT-TCCEEHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHH-cCCcCHHHHHHHHCcCHHHHHHHHH
Confidence 4666665 5999999999999999999877664
No 163
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=52.66 E-value=4.4 Score=41.36 Aligned_cols=30 Identities=33% Similarity=0.839 Sum_probs=25.7
Q ss_pred CCcceeCCCCCCceeecCCcCcccccchhhhhh
Q 002388 827 IDVCCICRHKHGICIKCNYGNCQTTFHPTCARS 859 (929)
Q Consensus 827 k~~C~iC~~~~GacIqC~~~~C~~~FH~~CA~~ 859 (929)
...|.+|+. +|..|.|. +|..+||..|...
T Consensus 7 ~~~C~~C~~-~g~ll~Cd--~C~~~~H~~Cl~p 36 (207)
T 3u5n_A 7 EDWCAVCQN-GGDLLCCE--KCPKVFHLTCHVP 36 (207)
T ss_dssp CSSBTTTCC-CEEEEECS--SSSCEECTTTSSS
T ss_pred CCCCCCCCC-CCceEEcC--CCCCccCCccCCC
Confidence 367999997 48899999 8999999999754
No 164
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=50.87 E-value=11 Score=32.22 Aligned_cols=53 Identities=13% Similarity=0.150 Sum_probs=38.6
Q ss_pred hHHHHHHHHHhhCccccccchhhhccChhhhhhhcc-ccccccchhHHHHHHhh
Q 002388 220 NFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLA-DGTFASDLQCKLVKWLS 272 (929)
Q Consensus 220 ~~~~~l~kli~~gkv~v~d~~~~~gis~~~l~~~~~-~~~~~~~~~~k~~~wl~ 272 (929)
.|.-+||++..+-..+.+++|..+|||+.+|..-.. ......+.-.+|.+.|.
T Consensus 17 ~l~~~l~~~R~~~glsq~~lA~~~gis~~~is~~e~g~~~~~~~~l~~ia~~l~ 70 (92)
T 1lmb_3 17 RLKAIYEKKKNELGLSQESVADKMGMGQSGVGALFNGINALNAYNAALLAKILK 70 (92)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHTTSSCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHC
Confidence 456667776677789999999999999999877765 23344455556666664
No 165
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=50.82 E-value=6.4 Score=34.69 Aligned_cols=50 Identities=30% Similarity=0.713 Sum_probs=38.7
Q ss_pred CCCCcCcccCCCCC-CCCCEEEecccCcccccccccCccCCCCceeccccccc
Q 002388 703 EHPRSCDICRRSET-ILNPILICSGCKVAVHLDCYRNAKESTGPWYCELCEEL 754 (929)
Q Consensus 703 e~d~~CsVC~~~E~-~~N~Ll~Cd~C~vaVHq~CYGi~~~p~g~WlCd~C~~~ 754 (929)
+....|.-|...=. ..|.-..|..|...|=..| ++... .+.|+|-.|...
T Consensus 23 ~~~r~CarC~~~LG~l~~~g~~C~~Ck~rVC~~C-rv~~~-~~~W~C~VC~k~ 73 (76)
T 2csz_A 23 YSDRTCARCQESLGRLSPKTNTCRGCNHLVCRDC-RIQES-NGTWRCKVCSGP 73 (76)
T ss_dssp CCCCBCSSSCCBCSSSCTTTSEETTTTEECCTTS-EEECS-TTCEEEHHHHSS
T ss_pred CCccchhhhCccccccccCCCcCcccChhhcccc-cccCC-CCCEEEeeCchh
Confidence 44578999998643 4677889999999999999 44432 378999999654
No 166
>2l1p_A DNA-binding protein SATB1; PSI-biology, NESG, structural genomics, protein structure in northeast structural genomics consortium; NMR {Homo sapiens} PDB: 3nzl_A*
Probab=50.48 E-value=8 Score=34.57 Aligned_cols=49 Identities=14% Similarity=0.315 Sum_probs=38.1
Q ss_pred hHHHHHHHHHhhCccccccchhhhccChhhhhhhccccccccchhHHHHHHh
Q 002388 220 NFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLADGTFASDLQCKLVKWL 271 (929)
Q Consensus 220 ~~~~~l~kli~~gkv~v~d~~~~~gis~~~l~~~~~~~~~~~~~~~k~~~wl 271 (929)
.+-.=||.|.+ ..+=+++|.++|||.-+|.+-. ..++.|.|..+|-+-|
T Consensus 21 ~~~~kLK~il~--GikQ~eLAK~iGIsqsTLSaIe-nG~~~PsL~~kIAk~f 69 (83)
T 2l1p_A 21 TVRNALKDLLK--DMNQSSLAKECPLSQSMISSIV-NSTYYANVSAAKCQEF 69 (83)
T ss_dssp HHHHHHHHHHT--TSCHHHHHHHSSSCHHHHHHHH-TCSSCCCCCSHHHHHH
T ss_pred HHHHHHHHHHH--hcCHHHHHHHcCCCHHHHHHHH-cCCCCCCchHHHHHHH
Confidence 34556888887 7888999999999999998776 4555578778877644
No 167
>1y8f_A UNC-13 homolog A, MUNC13-1; cysteine-rich domain, C1-domain, zinc-binding domain, endocytosis/exocytosis,signaling protein complex; NMR {Rattus norvegicus}
Probab=49.93 E-value=8.6 Score=32.27 Aligned_cols=34 Identities=26% Similarity=0.477 Sum_probs=26.7
Q ss_pred CCcCcccCCCCC-CCCCEEEecccCcccccccccC
Q 002388 705 PRSCDICRRSET-ILNPILICSGCKVAVHLDCYRN 738 (929)
Q Consensus 705 d~~CsVC~~~E~-~~N~Ll~Cd~C~vaVHq~CYGi 738 (929)
...|++|...=- ...+-+.|..|++.+|..|...
T Consensus 24 pt~C~~C~~~l~Gl~~qg~~C~~C~~~~Hk~C~~~ 58 (66)
T 1y8f_A 24 PTYCYECEGLLWGIARQGMRCTECGVKCHEKCQDL 58 (66)
T ss_dssp CCCCTTTCCCCCSSCCEEEEETTTCCEECTTHHHH
T ss_pred CcChhhcChhhcccCcceeEcCCCCCeeCHHHHhh
Confidence 467999987431 2357899999999999999853
No 168
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=49.26 E-value=13 Score=31.24 Aligned_cols=53 Identities=9% Similarity=0.125 Sum_probs=40.5
Q ss_pred hHHHHHHHHHhhCccccccchhhhccChhhhhhhcc-ccccccchhHHHHHHhh
Q 002388 220 NFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLA-DGTFASDLQCKLVKWLS 272 (929)
Q Consensus 220 ~~~~~l~kli~~gkv~v~d~~~~~gis~~~l~~~~~-~~~~~~~~~~k~~~wl~ 272 (929)
.|+..||++..+-..+..++|..+|||+.+|..-.. ....+.+.-.+|.+.|.
T Consensus 14 ~~~~~l~~~R~~~gltq~elA~~~gis~~~is~~e~g~~~~~~~~l~~l~~~l~ 67 (83)
T 3f6w_A 14 ALLDLLLEARSAAGITQKELAARLGRPQSFVSKTENAERRLDVIEFMDFCRGIG 67 (83)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHTTSSCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHCCCCCCCHHHHHHHHHHcC
Confidence 467889999888889999999999999998877765 33445555556665553
No 169
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=49.24 E-value=8.6 Score=33.57 Aligned_cols=34 Identities=21% Similarity=0.269 Sum_probs=25.1
Q ss_pred cchHHHHHHHHHhhCccccccchhhhccChhhhhh
Q 002388 218 ALNFTLILKKLIDRGKVNVKDIASDIGISPDLLKT 252 (929)
Q Consensus 218 s~~~~~~l~kli~~gkv~v~d~~~~~gis~~~l~~ 252 (929)
|.+|-.-.-+|++.| .++.+||.++|||+.+|..
T Consensus 24 s~e~k~~~v~~~~~g-~s~~~iA~~~gIs~sTl~r 57 (87)
T 2elh_A 24 TPRDKIHAIQRIHDG-ESKASVARDIGVPESTLRG 57 (87)
T ss_dssp CHHHHHHHHHHHHHT-CCHHHHHHHHTCCHHHHHH
T ss_pred CHHHHHHHHHHHHCC-CCHHHHHHHHCcCHHHHHH
Confidence 556644444566666 8999999999999877643
No 170
>3vk0_A NHTF, transcriptional regulator; HTH motif, XRE transcription factor, DNA binding protein; 1.88A {Neisseria meningitidis}
Probab=49.13 E-value=14 Score=33.35 Aligned_cols=55 Identities=9% Similarity=0.018 Sum_probs=43.6
Q ss_pred chHHHHHHHHHhhCccccccchhhhccChhhhhhhcc-ccccccchhHHHHHHhhh
Q 002388 219 LNFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLA-DGTFASDLQCKLVKWLSN 273 (929)
Q Consensus 219 ~~~~~~l~kli~~gkv~v~d~~~~~gis~~~l~~~~~-~~~~~~~~~~k~~~wl~~ 273 (929)
..|+.-||+|..+-..+.+++|..+|||..+|..-.. ....+.+.-.+|.+.|.=
T Consensus 20 ~~~g~~lr~~R~~~gltq~elA~~~gis~~~is~~E~G~~~p~~~~l~~ia~~l~v 75 (114)
T 3vk0_A 20 AVLAYNMRLFRVNKGWSQEELARQCGLDRTYVSAVERKRWNIALSNIEKMAAALGV 75 (114)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHTTTCCCCCHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHhCC
Confidence 3578889999999999999999999999999887765 344566666777776653
No 171
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=48.53 E-value=7.2 Score=33.93 Aligned_cols=47 Identities=23% Similarity=0.542 Sum_probs=31.3
Q ss_pred CCcCcccCCCCCCCCCEEEecccCcccccccccCccCCCCceeccccccc
Q 002388 705 PRSCDICRRSETILNPILICSGCKVAVHLDCYRNAKESTGPWYCELCEEL 754 (929)
Q Consensus 705 d~~CsVC~~~E~~~N~Ll~Cd~C~vaVHq~CYGi~~~p~g~WlCd~C~~~ 754 (929)
...|.||...-. +-+.|..|+..||..|..--......=.|..|...
T Consensus 15 i~~C~IC~~~i~---~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~ 61 (74)
T 2ct0_A 15 VKICNICHSLLI---QGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDY 61 (74)
T ss_dssp SCBCSSSCCBCS---SSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSC
T ss_pred CCcCcchhhHcc---cCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCc
Confidence 367999998543 23589999999999998522111222357777643
No 172
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=48.41 E-value=7 Score=34.84 Aligned_cols=32 Identities=19% Similarity=0.290 Sum_probs=27.4
Q ss_pred HHHHHHHhhCccccccchhhhccChhhhhhhc
Q 002388 223 LILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (929)
Q Consensus 223 ~~l~kli~~gkv~v~d~~~~~gis~~~l~~~~ 254 (929)
-||+.|...|..++.|||..+|||+-++---|
T Consensus 31 ~IL~~l~~~~~~~~~ela~~l~is~stvs~hL 62 (99)
T 2zkz_A 31 KIVNELYKHKALNVTQIIQILKLPQSTVSQHL 62 (99)
T ss_dssp HHHHHHHHHSCEEHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHCCCcCHHHHHHHHCcCHHHHHHHH
Confidence 47777888999999999999999998876554
No 173
>2eli_A Protein kinase C alpha type; PKC-alpha, PKC-A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=48.05 E-value=11 Score=33.39 Aligned_cols=35 Identities=29% Similarity=0.656 Sum_probs=27.5
Q ss_pred CCCcCcccCCCCC-CCCCEEEecccCcccccccccC
Q 002388 704 HPRSCDICRRSET-ILNPILICSGCKVAVHLDCYRN 738 (929)
Q Consensus 704 ~d~~CsVC~~~E~-~~N~Ll~Cd~C~vaVHq~CYGi 738 (929)
....|++|...=. ...+-+.|..|++.||..|...
T Consensus 27 ~pt~C~~C~~~l~Gl~kqG~~C~~C~~~~Hk~C~~~ 62 (85)
T 2eli_A 27 SPTFCDHCGSLLYGLIHQGMKCDTCDMNVHKQCVIN 62 (85)
T ss_dssp SCCBCSSSCCBCCCSSSCEEECSSSCCEEETTTTTT
T ss_pred CCcCCcccCccccccccCCCcCCCcCCccCHhHHhh
Confidence 3478999987431 2368899999999999999863
No 174
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=47.77 E-value=15 Score=32.85 Aligned_cols=61 Identities=10% Similarity=0.084 Sum_probs=43.9
Q ss_pred CCCCCCc--chHHHHHHHHHhhCccccccchhhhccChhhhhhhcc-ccccccchhHHHHHHhh
Q 002388 212 DVNPSDA--LNFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLA-DGTFASDLQCKLVKWLS 272 (929)
Q Consensus 212 ~~~~~~s--~~~~~~l~kli~~gkv~v~d~~~~~gis~~~l~~~~~-~~~~~~~~~~k~~~wl~ 272 (929)
...|.+. ..|+..||+|..+-..+.+++|..+|||+.+|..-.. ....+.+.-.+|.+.|.
T Consensus 18 ~~~M~~~~~~~ig~~lr~~R~~~gltq~elA~~~gis~~~is~iE~G~~~ps~~~l~~ia~~l~ 81 (99)
T 3g5g_A 18 GSHMESFLLSKVSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIERNSRNLTIKSLELIMKGLE 81 (99)
T ss_dssp ----CCHHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTCSCCBHHHHHHHHHHTT
T ss_pred cccccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHCCCCCCCHHHHHHHHHHHC
Confidence 4455443 3588899999999999999999999999999887765 34455555566666654
No 175
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=47.20 E-value=7.8 Score=32.49 Aligned_cols=32 Identities=25% Similarity=0.360 Sum_probs=25.5
Q ss_pred HHHHHHHhhC-ccccccchhhhccChhhhhhhc
Q 002388 223 LILKKLIDRG-KVNVKDIASDIGISPDLLKTTL 254 (929)
Q Consensus 223 ~~l~kli~~g-kv~v~d~~~~~gis~~~l~~~~ 254 (929)
-||+-|-+.| -+++.|||..+|||..++...|
T Consensus 14 ~IL~~L~~~~~~~s~~eLA~~lglsr~tv~~~l 46 (67)
T 2heo_A 14 KILQVLSDDGGPVAIFQLVKKCQVPKKTLNQVL 46 (67)
T ss_dssp HHHHHHHHHCSCEEHHHHHHHHCSCHHHHHHHH
T ss_pred HHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHH
Confidence 4777776665 5999999999999988776554
No 176
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 PDB: 2yal_A
Probab=47.08 E-value=13 Score=32.85 Aligned_cols=52 Identities=12% Similarity=0.146 Sum_probs=40.0
Q ss_pred HHHHHHHHHhhCccccccchhhhccChhhhhhhccc--cccccchhHHHHHHhh
Q 002388 221 FTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLAD--GTFASDLQCKLVKWLS 272 (929)
Q Consensus 221 ~~~~l~kli~~gkv~v~d~~~~~gis~~~l~~~~~~--~~~~~~~~~k~~~wl~ 272 (929)
|+-.||++..+-..+..++|..+|||+.+|..-... ...+.+.-.+|.+.|.
T Consensus 2 ~~~~l~~~r~~~gltq~~lA~~~gis~~~i~~~e~g~~~~p~~~~l~~ia~~l~ 55 (111)
T 1b0n_A 2 IGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLD 55 (111)
T ss_dssp CHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTCCSCCCHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCCHHHHHHHHHHHC
Confidence 456789999999999999999999999999877653 3444555566766664
No 177
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=46.65 E-value=8 Score=36.69 Aligned_cols=37 Identities=11% Similarity=0.337 Sum_probs=30.7
Q ss_pred CcchHHHHHHHHHhhCccccccchhhhccChhhhhhhc
Q 002388 217 DALNFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (929)
Q Consensus 217 ~s~~~~~~l~kli~~gkv~v~d~~~~~gis~~~l~~~~ 254 (929)
+..|. .||+.|-+.|.+++.|||.++|+|+.++...|
T Consensus 8 d~~d~-~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l 44 (151)
T 2dbb_A 8 DRVDM-QLVKILSENSRLTYRELADILNTTRQRIARRI 44 (151)
T ss_dssp CHHHH-HHHHHHHHCTTCCHHHHHHHTTSCHHHHHHHH
T ss_pred CHHHH-HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHH
Confidence 33444 57888999999999999999999999887665
No 178
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=46.26 E-value=7.1 Score=37.87 Aligned_cols=32 Identities=25% Similarity=0.380 Sum_probs=29.3
Q ss_pred HHHHHHHhhCccccccchhhhccChhhhhhhc
Q 002388 223 LILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (929)
Q Consensus 223 ~~l~kli~~gkv~v~d~~~~~gis~~~l~~~~ 254 (929)
-||+.|-+.|.+++.+||.++|+|+.++..-|
T Consensus 7 ~il~~L~~~~~~s~~~la~~lg~s~~tv~~rl 38 (162)
T 3i4p_A 7 KILRILQEDSTLAVADLAKKVGLSTTPCWRRI 38 (162)
T ss_dssp HHHHHHTTCSCSCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHCcCHHHHHHHH
Confidence 47899999999999999999999999988766
No 179
>1r71_A Transcriptional repressor protein KORB; INCP, plasmid partitioning, protein-DNA complex, heilx-turn- helix motif, transcription factor; HET: BRU; 2.20A {Escherichia coli} SCOP: a.4.14.1
Probab=45.73 E-value=12 Score=37.72 Aligned_cols=51 Identities=16% Similarity=0.260 Sum_probs=42.6
Q ss_pred CcchHHHHHHHHHhhCccccccchhhhccChhhhhhhccccccccchhHHHH
Q 002388 217 DALNFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLADGTFASDLQCKLV 268 (929)
Q Consensus 217 ~s~~~~~~l~kli~~gkv~v~d~~~~~gis~~~l~~~~~~~~~~~~~~~k~~ 268 (929)
|-++.|..+++|++.| .+..+||..+|+|+-.+...|.=..+.|.++-.|.
T Consensus 37 ~piE~A~a~~~L~~~G-~t~eeiA~~lG~s~s~V~~~LrLl~Lp~~v~~~v~ 87 (178)
T 1r71_A 37 TPREIADFIGRELAKG-KKKGDIAKEIGKSPAFITQHVTLLDLPEKIADAFN 87 (178)
T ss_dssp CHHHHHHHHHHHHHTT-CCHHHHHHHHTCCHHHHHHHHGGGSCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcC-CCHHHHHHHHCcCHHHHHHHHHHHcCCHHHHHHHH
Confidence 4578899999999997 69999999999999999888876667777666543
No 180
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Probab=45.25 E-value=8.1 Score=45.88 Aligned_cols=33 Identities=24% Similarity=0.491 Sum_probs=0.0
Q ss_pred CCcCcccCCCC-CCCCCEEEecccCccccccccc
Q 002388 705 PRSCDICRRSE-TILNPILICSGCKVAVHLDCYR 737 (929)
Q Consensus 705 d~~CsVC~~~E-~~~N~Ll~Cd~C~vaVHq~CYG 737 (929)
..+|++|...= ....+-+.|..|++.||..|..
T Consensus 48 p~~C~~C~~~i~g~~~qg~~C~~C~~~~H~~C~~ 81 (674)
T 3pfq_A 48 PTFCSHCTDFIWGFGKQGFQCQVCSFVVHKRCHE 81 (674)
T ss_dssp ----------------------------------
T ss_pred CCccccccccccccCCceeECCCCCCCcChhhcC
Confidence 47899998742 1235778999999999999974
No 181
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=45.20 E-value=8.3 Score=37.67 Aligned_cols=29 Identities=28% Similarity=0.690 Sum_probs=25.8
Q ss_pred CcceeCCCCCCceeecCCcCcccccchhhhhh
Q 002388 828 DVCCICRHKHGICIKCNYGNCQTTFHPTCARS 859 (929)
Q Consensus 828 ~~C~iC~~~~GacIqC~~~~C~~~FH~~CA~~ 859 (929)
..|.+|+. +|..+-|. .|.+.||..|...
T Consensus 64 d~C~vC~~-GG~LlcCD--~Cpr~Fh~~Cl~p 92 (142)
T 2lbm_A 64 EQCRWCAE-GGNLICCD--FCHNAFCKKCILR 92 (142)
T ss_dssp CSCSSSCC-CSSEEECS--SSCCEEEHHHHHH
T ss_pred CeecccCC-CCcEEeCC--CCCCeeeHhhcCC
Confidence 68999998 58899998 9999999999864
No 182
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=44.67 E-value=13 Score=32.38 Aligned_cols=34 Identities=24% Similarity=0.645 Sum_probs=27.1
Q ss_pred cCCCCcceeCCCCCCceeecCCcCcccccchhhhhh
Q 002388 824 PKGIDVCCICRHKHGICIKCNYGNCQTTFHPTCARS 859 (929)
Q Consensus 824 ~k~k~~C~iC~~~~GacIqC~~~~C~~~FH~~CA~~ 859 (929)
......|.||....-..+.|. .|...||..|..+
T Consensus 12 ~~~i~~C~IC~~~i~~g~~C~--~C~h~fH~~Ci~k 45 (74)
T 2ct0_A 12 PDAVKICNICHSLLIQGQSCE--TCGIRMHLPCVAK 45 (74)
T ss_dssp SSSSCBCSSSCCBCSSSEECS--SSCCEECHHHHHH
T ss_pred cCCCCcCcchhhHcccCCccC--CCCchhhHHHHHH
Confidence 333578999998655567898 9999999999954
No 183
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=44.52 E-value=12 Score=31.36 Aligned_cols=47 Identities=13% Similarity=0.225 Sum_probs=34.2
Q ss_pred HHHHHhhCccccccchhhhccChhhhhhhccccccccchhHHHHHHhh
Q 002388 225 LKKLIDRGKVNVKDIASDIGISPDLLKTTLADGTFASDLQCKLVKWLS 272 (929)
Q Consensus 225 l~kli~~gkv~v~d~~~~~gis~~~l~~~~~~~~~~~~~~~k~~~wl~ 272 (929)
|++|++.-. +..++|..+|||+.+|..-.....+..+.-.+|.+.|.
T Consensus 4 l~~~r~~~g-sq~~lA~~lgvs~~~is~~e~g~~~p~~~l~~ia~~l~ 50 (79)
T 3bd1_A 4 IDIAINKLG-SVSALAASLGVRQSAISNWRARGRVPAERCIDIERVTN 50 (79)
T ss_dssp HHHHHHHHS-SHHHHHHHHTCCHHHHHHHHHHTCCCGGGHHHHHHHTT
T ss_pred HHHHHHHhC-CHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHC
Confidence 566665544 99999999999999988777644444566667777665
No 184
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=44.46 E-value=8.9 Score=36.47 Aligned_cols=32 Identities=22% Similarity=0.506 Sum_probs=28.8
Q ss_pred HHHHHHHhhCccccccchhhhccChhhhhhhc
Q 002388 223 LILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (929)
Q Consensus 223 ~~l~kli~~gkv~v~d~~~~~gis~~~l~~~~ 254 (929)
.||+-|-+.|.+++.|||.++|+|+.++...|
T Consensus 12 ~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l 43 (152)
T 2cg4_A 12 GILEALMGNARTAYAELAKQFGVSPETIHVRV 43 (152)
T ss_dssp HHHHHHHHCTTSCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHH
Confidence 58888999999999999999999999887665
No 185
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=44.30 E-value=9 Score=33.18 Aligned_cols=33 Identities=24% Similarity=0.386 Sum_probs=28.9
Q ss_pred HHHHHHHHhhC---ccccccchhhhccChhhhhhhc
Q 002388 222 TLILKKLIDRG---KVNVKDIASDIGISPDLLKTTL 254 (929)
Q Consensus 222 ~~~l~kli~~g---kv~v~d~~~~~gis~~~l~~~~ 254 (929)
.-||.-|-+.| .+++++||.++|||.-++...|
T Consensus 17 ~~IL~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~L 52 (77)
T 1qgp_A 17 QRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVL 52 (77)
T ss_dssp HHHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHH
Confidence 56778888888 9999999999999998887766
No 186
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=44.00 E-value=9.3 Score=36.13 Aligned_cols=32 Identities=16% Similarity=0.426 Sum_probs=28.4
Q ss_pred HHHHHHHhhCccccccchhhhccChhhhhhhc
Q 002388 223 LILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (929)
Q Consensus 223 ~~l~kli~~gkv~v~d~~~~~gis~~~l~~~~ 254 (929)
.||+-|-+.|.+++.|||.++|+|+.++...|
T Consensus 9 ~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l 40 (144)
T 2cfx_A 9 NIIEELKKDSRLSMRELGRKIKLSPPSVTERV 40 (144)
T ss_dssp HHHHHHHHCSCCCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHH
Confidence 57888888999999999999999999887655
No 187
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=43.75 E-value=9.1 Score=37.71 Aligned_cols=36 Identities=19% Similarity=0.405 Sum_probs=30.4
Q ss_pred cchHHHHHHHHHhhCccccccchhhhccChhhhhhhc
Q 002388 218 ALNFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (929)
Q Consensus 218 s~~~~~~l~kli~~gkv~v~d~~~~~gis~~~l~~~~ 254 (929)
..|. .||+.|.+.|.+++.|||.++|+|+.++..-|
T Consensus 27 ~~d~-~IL~~L~~~~~~s~~eLA~~lglS~~tv~~rl 62 (171)
T 2e1c_A 27 EIDK-KIIKILQNDGKAPLREISKITGLAESTIHERI 62 (171)
T ss_dssp HHHH-HHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHH-HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHH
Confidence 3444 58889999999999999999999999887665
No 188
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=43.27 E-value=6.1 Score=45.28 Aligned_cols=28 Identities=39% Similarity=0.962 Sum_probs=24.3
Q ss_pred CcceeCCCC---CCceeecCCcCcccccchhhh
Q 002388 828 DVCCICRHK---HGICIKCNYGNCQTTFHPTCA 857 (929)
Q Consensus 828 ~~C~iC~~~---~GacIqC~~~~C~~~FH~~CA 857 (929)
...++|++. .|.+|+|. .|..+||..|.
T Consensus 5 ~~yCiC~~~~d~~~~MIqCD--~C~~WfH~~CV 35 (447)
T 3kv4_A 5 PVYCLCRLPYDVTRFMIECD--MCQDWFHGSCV 35 (447)
T ss_dssp CEETTTTEECCTTSCEEECT--TTCCEEEHHHH
T ss_pred CeEEeCCCcCCCCCCeEEcC--CCCcccccccC
Confidence 356799985 58999999 89999999998
No 189
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=43.23 E-value=6.6 Score=39.70 Aligned_cols=29 Identities=31% Similarity=0.891 Sum_probs=25.2
Q ss_pred CcceeCCCCCCceeecCCcCcccccchhhhhh
Q 002388 828 DVCCICRHKHGICIKCNYGNCQTTFHPTCARS 859 (929)
Q Consensus 828 ~~C~iC~~~~GacIqC~~~~C~~~FH~~CA~~ 859 (929)
..|.+|+.. |..+.|. +|...||..|...
T Consensus 3 ~~C~~C~~~-g~ll~Cd--~C~~~~H~~Cl~p 31 (189)
T 2ro1_A 3 TICRVCQKP-GDLVMCN--QCEFCFHLDCHLP 31 (189)
T ss_dssp CCBTTTCCC-SSCCCCT--TTCCBCCSTTSTT
T ss_pred CcCccCCCC-CceeECC--CCCchhccccCCC
Confidence 479999974 7899999 8999999999864
No 190
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=43.04 E-value=9.7 Score=36.23 Aligned_cols=35 Identities=20% Similarity=0.416 Sum_probs=29.6
Q ss_pred chHHHHHHHHHhhCccccccchhhhccChhhhhhhc
Q 002388 219 LNFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (929)
Q Consensus 219 ~~~~~~l~kli~~gkv~v~d~~~~~gis~~~l~~~~ 254 (929)
.|. -||+-|.+.|.+++++||.++|+|+.++...|
T Consensus 8 ~~~-~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l 42 (151)
T 2cyy_A 8 IDK-KIIKILQNDGKAPLREISKITGLAESTIHERI 42 (151)
T ss_dssp HHH-HHHHHHHHCTTCCHHHHHHHHCSCHHHHHHHH
T ss_pred HHH-HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHH
Confidence 344 57888888999999999999999999886655
No 191
>1rfh_A RAS association (ralgds/AF-6) domain family 5; zinc, signal transduction, apoptosis, cysteine rich domain, metal binding protein; NMR {Mus musculus}
Probab=42.98 E-value=6.3 Score=32.55 Aligned_cols=33 Identities=36% Similarity=0.816 Sum_probs=26.7
Q ss_pred CCCcCcccCCCCCCCCCEEEecccCcccccccccC
Q 002388 704 HPRSCDICRRSETILNPILICSGCKVAVHLDCYRN 738 (929)
Q Consensus 704 ~d~~CsVC~~~E~~~N~Ll~Cd~C~vaVHq~CYGi 738 (929)
....|+.|.+.= ..+-+.|..|++.+|..|...
T Consensus 21 ~pt~C~~C~~~i--~kqg~kC~~C~~~cH~kC~~~ 53 (59)
T 1rfh_A 21 GPGWCDLCGREV--LRQALRCANCKFTCHSECRSL 53 (59)
T ss_dssp CCEECTTTCSEE--CSCCEECTTTSCEECHHHHTT
T ss_pred CCeEchhcchhh--hhCccEeCCCCCeEehhhhhh
Confidence 347799997643 467789999999999999853
No 192
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=42.73 E-value=12 Score=32.99 Aligned_cols=35 Identities=26% Similarity=0.351 Sum_probs=25.1
Q ss_pred cchHHHHHHHHHhhC-ccccccchhhhccChhhhhh
Q 002388 218 ALNFTLILKKLIDRG-KVNVKDIASDIGISPDLLKT 252 (929)
Q Consensus 218 s~~~~~~l~kli~~g-kv~v~d~~~~~gis~~~l~~ 252 (929)
|.+|-+-.-+++..+ ..++.+||.++|||+.+|..
T Consensus 7 s~e~k~~~v~~~~~~~g~s~~~ia~~~gIs~~tl~r 42 (97)
T 2jn6_A 7 SEEFKRDAVALYENSDGASLQQIANDLGINRVTLKN 42 (97)
T ss_dssp CHHHHHHHHHHHTTGGGSCHHHHHHHHTSCHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCChHHHHHHHHCcCHHHHHH
Confidence 455655444556545 68999999999999876643
No 193
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=42.70 E-value=8 Score=33.92 Aligned_cols=29 Identities=24% Similarity=0.767 Sum_probs=23.6
Q ss_pred cceeCCCC--CCceeecCCcCcccccchhhhhh
Q 002388 829 VCCICRHK--HGICIKCNYGNCQTTFHPTCARS 859 (929)
Q Consensus 829 ~C~iC~~~--~GacIqC~~~~C~~~FH~~CA~~ 859 (929)
.|.+|++. .+.+|.|. .|...||..|...
T Consensus 28 ~C~vC~~~~d~~~ll~CD--~C~~~yH~~Cl~P 58 (77)
T 3shb_A 28 ACHLCGGRQDPDKQLMCD--ECDMAFHIYCLDP 58 (77)
T ss_dssp SBTTTCCCSCGGGEEECT--TTCCEEETTTSSS
T ss_pred cCCccCCCCCCcceeEeC--CCCCccCcccCCC
Confidence 46677764 47899999 8999999999864
No 194
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=42.67 E-value=9.6 Score=33.47 Aligned_cols=31 Identities=23% Similarity=0.278 Sum_probs=26.1
Q ss_pred HHHHHHHHhhCccccccchhhhccChhhhhhhc
Q 002388 222 TLILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (929)
Q Consensus 222 ~~~l~kli~~gkv~v~d~~~~~gis~~~l~~~~ 254 (929)
..||+-| .|.+++.|||..+|||+-++...|
T Consensus 34 ~~Il~~L--~~~~~~~eLa~~l~is~~tv~~~L 64 (96)
T 1y0u_A 34 RKILRML--DKGRSEEEIMQTLSLSKKQLDYHL 64 (96)
T ss_dssp HHHHHHH--HTTCCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHH--cCCCCHHHHHHHHCcCHHHHHHHH
Confidence 3467766 788999999999999999987766
No 195
>2db6_A SH3 and cysteine rich domain 3; STAC3, C1 domain, cystein-rich domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=42.23 E-value=4.7 Score=34.75 Aligned_cols=35 Identities=31% Similarity=0.653 Sum_probs=27.0
Q ss_pred CCCcCcccCCCCC-CCCCEEEecccCcccccccccC
Q 002388 704 HPRSCDICRRSET-ILNPILICSGCKVAVHLDCYRN 738 (929)
Q Consensus 704 ~d~~CsVC~~~E~-~~N~Ll~Cd~C~vaVHq~CYGi 738 (929)
....|++|...=- ...+-+.|..|++.||..|...
T Consensus 27 ~pt~C~~C~~~lwGl~kqG~~C~~C~~~~Hk~C~~~ 62 (74)
T 2db6_A 27 KPKFCDVCARMIVLNNKFGLRCKNCKTNIHEHCQSY 62 (74)
T ss_dssp SCEECSSSCCEECHHHHEEEEESSSCCEECTTTTGG
T ss_pred CCcCchhcChhhccccCCccccCCCCCccChhHHhh
Confidence 3578999976421 1247899999999999999863
No 196
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua}
Probab=42.06 E-value=18 Score=32.50 Aligned_cols=56 Identities=11% Similarity=0.129 Sum_probs=43.5
Q ss_pred CcchHHHHHHHHHhhCccccccchhhhccChhhhhhhcc-ccccccchhHHHHHHhh
Q 002388 217 DALNFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLA-DGTFASDLQCKLVKWLS 272 (929)
Q Consensus 217 ~s~~~~~~l~kli~~gkv~v~d~~~~~gis~~~l~~~~~-~~~~~~~~~~k~~~wl~ 272 (929)
..-.|+--||+|..+-..+.+++|..+|||+.+|..-.. ....+.+.-.+|.+.|.
T Consensus 6 ~~~~~~~~l~~~r~~~glsq~~lA~~~gis~~~i~~~e~g~~~p~~~~l~~la~~l~ 62 (114)
T 3op9_A 6 IQHQFAENLSRLKKEHGLKNHQIAELLNVQTRTVAYYMSGETKPDIEKLIRLATYFH 62 (114)
T ss_dssp CCCCHHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHHTSSCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHhC
Confidence 334588899999998889999999999999999987765 33445555667777664
No 197
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=41.94 E-value=11 Score=32.64 Aligned_cols=33 Identities=27% Similarity=0.553 Sum_probs=29.0
Q ss_pred HHHHHHHHhhCccccccchhhhccChhhhhhhc
Q 002388 222 TLILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (929)
Q Consensus 222 ~~~l~kli~~gkv~v~d~~~~~gis~~~l~~~~ 254 (929)
..||.-|...|.+++.|||..+|||+-++...|
T Consensus 23 ~~il~~l~~~~~~s~~ela~~l~is~~tv~~~l 55 (109)
T 1sfx_A 23 VRIYSLLLERGGMRVSEIARELDLSARFVRDRL 55 (109)
T ss_dssp HHHHHHHHHHCCBCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHH
Confidence 567888888899999999999999999887766
No 198
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=41.66 E-value=9.7 Score=32.89 Aligned_cols=33 Identities=21% Similarity=0.309 Sum_probs=28.4
Q ss_pred HHHHHHHHhhCccccccchhhhccChhhhhhhc
Q 002388 222 TLILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (929)
Q Consensus 222 ~~~l~kli~~gkv~v~d~~~~~gis~~~l~~~~ 254 (929)
..||.-|...|.+++.|||..+|||+-++...|
T Consensus 19 ~~iL~~L~~~~~~~~~ela~~l~is~~tvs~~l 51 (100)
T 1ub9_A 19 LGIMIFLLPRRKAPFSQIQKVLDLTPGNLDSHI 51 (100)
T ss_dssp HHHHHHHHHHSEEEHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHhcCCcCHHHHHHHHCcCHHHHHHHH
Confidence 347788888899999999999999999887665
No 199
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=41.57 E-value=11 Score=35.87 Aligned_cols=32 Identities=16% Similarity=0.516 Sum_probs=28.3
Q ss_pred HHHHHHHhhCccccccchhhhccChhhhhhhc
Q 002388 223 LILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (929)
Q Consensus 223 ~~l~kli~~gkv~v~d~~~~~gis~~~l~~~~ 254 (929)
.||+-|-+.|.+++.+||..+|+|+.++...|
T Consensus 11 ~iL~~L~~~~~~s~~ela~~lg~s~~tv~~~l 42 (150)
T 2w25_A 11 ILVRELAADGRATLSELATRAGLSVSAVQSRV 42 (150)
T ss_dssp HHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHH
Confidence 57888888999999999999999999886655
No 200
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=41.54 E-value=11 Score=39.88 Aligned_cols=52 Identities=12% Similarity=0.289 Sum_probs=44.3
Q ss_pred hCccccccchhhhccChhhhhhhcc-ccccccchhHHHHHHhhhccccccccc
Q 002388 231 RGKVNVKDIASDIGISPDLLKTTLA-DGTFASDLQCKLVKWLSNHAYLGGLLK 282 (929)
Q Consensus 231 ~gkv~v~d~~~~~gis~~~l~~~~~-~~~~~~~~~~k~~~wl~~~~~~~~~~~ 282 (929)
+.+++++|||.+.|+|.-|+--+|+ ....++....||.+-.+..-|.+....
T Consensus 8 ~~~~ti~diA~~agVS~~TVSr~Ln~~~~vs~~tr~rV~~~~~~lgY~pn~~a 60 (344)
T 3kjx_A 8 KRPLTLRDVSEASGVSEMTVSRVLRNRGDVSDATRARVLAAAKELGYVPNKIA 60 (344)
T ss_dssp --CCCHHHHHHHHCCCSHHHHHHHTTCSCCCHHHHHHHHHHHHHHTCCCCCCC
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhCCCCCHHH
Confidence 4579999999999999999999998 567899999999999999888765443
No 201
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=41.51 E-value=11 Score=35.17 Aligned_cols=32 Identities=25% Similarity=0.456 Sum_probs=28.4
Q ss_pred HHHHHHHhhCccccccchhhhccChhhhhhhc
Q 002388 223 LILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (929)
Q Consensus 223 ~~l~kli~~gkv~v~d~~~~~gis~~~l~~~~ 254 (929)
.||+-|-+.|..++.+||.++|||+.++...|
T Consensus 8 ~il~~L~~~~~~~~~ela~~lg~s~~tv~~~l 39 (141)
T 1i1g_A 8 IILEILEKDARTPFTEIAKKLGISETAVRKRV 39 (141)
T ss_dssp HHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHH
Confidence 46778888899999999999999999988776
No 202
>1kbe_A Kinase suppressor of RAS; KSR, cysteine-rich domain, zinc- binding protein, signaling protein; NMR {Mus musculus} SCOP: g.49.1.1 PDB: 1kbf_A
Probab=41.38 E-value=13 Score=30.00 Aligned_cols=29 Identities=24% Similarity=0.754 Sum_probs=23.4
Q ss_pred CcCcccCCCCCCCCCEEEecccCccccccccc
Q 002388 706 RSCDICRRSETILNPILICSGCKVAVHLDCYR 737 (929)
Q Consensus 706 ~~CsVC~~~E~~~N~Ll~Cd~C~vaVHq~CYG 737 (929)
..|++|...=- +-+.|..|++.+|+.|-.
T Consensus 15 t~C~~C~k~i~---~G~kC~~Ck~~cH~kC~~ 43 (49)
T 1kbe_A 15 QVCNVCQKSMI---FGVKCKHCRLKCHNKCTK 43 (49)
T ss_dssp CCCSSSCCSSC---CEEEETTTTEEESSSCTT
T ss_pred cCccccCceeE---CcCCCCCCCCccchhhcC
Confidence 57999987432 238999999999999975
No 203
>1r79_A Diacylglycerol kinase, delta; C1 domain, cystein-rich zinc binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: g.49.1.1
Probab=41.23 E-value=12 Score=33.36 Aligned_cols=33 Identities=24% Similarity=0.574 Sum_probs=26.1
Q ss_pred CCcCcccCCCC-C-CCCCEEEecccCccccccccc
Q 002388 705 PRSCDICRRSE-T-ILNPILICSGCKVAVHLDCYR 737 (929)
Q Consensus 705 d~~CsVC~~~E-~-~~N~Ll~Cd~C~vaVHq~CYG 737 (929)
...|.||...= . ..-+-+.|.-|.+.||..||.
T Consensus 38 ~s~C~vC~k~c~s~~~L~g~rC~WCq~~VH~~C~~ 72 (84)
T 1r79_A 38 SAKCTVCDKTCGSVLRLQDWRCLWCKAMVHTSCKE 72 (84)
T ss_dssp TCBCSSSCCBCCCTTTCCCEEESSSCCEECHHHHH
T ss_pred CCEeCCCCCEeCCccCCCCCCCcccChhHHHHHHH
Confidence 47899998752 1 233678999999999999985
No 204
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=41.15 E-value=11 Score=36.37 Aligned_cols=32 Identities=22% Similarity=0.412 Sum_probs=28.4
Q ss_pred HHHHHHHhhCccccccchhhhccChhhhhhhc
Q 002388 223 LILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (929)
Q Consensus 223 ~~l~kli~~gkv~v~d~~~~~gis~~~l~~~~ 254 (929)
.||+-|.+.|.++++|||.++|+|+.++...|
T Consensus 14 ~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l 45 (162)
T 2p5v_A 14 KILQVLQENGRLTNVELSERVALSPSPCLRRL 45 (162)
T ss_dssp HHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHH
Confidence 58888999999999999999999998876655
No 205
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=40.87 E-value=9.7 Score=35.99 Aligned_cols=32 Identities=31% Similarity=0.354 Sum_probs=28.2
Q ss_pred HHHHHHHhhCccccccchhhhccChhhhhhhc
Q 002388 223 LILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (929)
Q Consensus 223 ~~l~kli~~gkv~v~d~~~~~gis~~~l~~~~ 254 (929)
.||+-|-+.|.++++|||..+|+|+.++...|
T Consensus 7 ~il~~L~~~~~~~~~ela~~lg~s~~tv~~~l 38 (150)
T 2pn6_A 7 RILKILQYNAKYSLDEIAREIRIPKATLSYRI 38 (150)
T ss_dssp HHHHHHTTCTTSCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHH
Confidence 47788888899999999999999999887665
No 206
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=40.75 E-value=25 Score=29.62 Aligned_cols=54 Identities=11% Similarity=0.115 Sum_probs=42.2
Q ss_pred chHHHHHHHHHhhCccccccchhhhccChhhhhhhccc--cccccchhHHHHHHhh
Q 002388 219 LNFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLAD--GTFASDLQCKLVKWLS 272 (929)
Q Consensus 219 ~~~~~~l~kli~~gkv~v~d~~~~~gis~~~l~~~~~~--~~~~~~~~~k~~~wl~ 272 (929)
.+|.--||++-.+-.++.+++|..+|||..+|..-... .....+.-.+|.+.|.
T Consensus 9 ~~~~~~ik~~R~~~gltq~elA~~~gis~~~is~~E~G~~~~p~~~~l~~ia~~l~ 64 (78)
T 3qq6_A 9 HMIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLD 64 (78)
T ss_dssp TTHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTSCCCCBHHHHHHHHHHHT
T ss_pred CCccHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCCHHHHHHHHHHHC
Confidence 35777889998888999999999999999998877754 4455566666766664
No 207
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=40.57 E-value=7.1 Score=45.18 Aligned_cols=28 Identities=36% Similarity=0.999 Sum_probs=23.8
Q ss_pred CcceeCCCC---CCceeecCCcCcccccchhhh
Q 002388 828 DVCCICRHK---HGICIKCNYGNCQTTFHPTCA 857 (929)
Q Consensus 828 ~~C~iC~~~---~GacIqC~~~~C~~~FH~~CA 857 (929)
...++|++. .|.+|+|. .|..+||..|.
T Consensus 37 ~~yC~C~~~~d~~~~MIqCd--~C~~WfH~~Cv 67 (488)
T 3kv5_D 37 PVYCVCRQPYDVNRFMIECD--ICKDWFHGSCV 67 (488)
T ss_dssp CEETTTTEECCTTSCEEEBT--TTCCEEEHHHH
T ss_pred CeEEeCCCcCCCCCCeEEcc--CCCCceeeeec
Confidence 344499985 68999999 79999999998
No 208
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=40.45 E-value=11 Score=33.38 Aligned_cols=31 Identities=26% Similarity=0.547 Sum_probs=26.0
Q ss_pred HHHHHHHhhCccccccchhhhccChhhhhhhc
Q 002388 223 LILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (929)
Q Consensus 223 ~~l~kli~~gkv~v~d~~~~~gis~~~l~~~~ 254 (929)
.||.-|. .|.+++.|||..+|||+-++...|
T Consensus 27 ~Il~~L~-~~~~~~~ela~~l~is~~tvs~~L 57 (102)
T 3pqk_A 27 MLVCTLV-EGEFSVGELEQQIGIGQPTLSQQL 57 (102)
T ss_dssp HHHHHHH-TCCBCHHHHHHHHTCCTTHHHHHH
T ss_pred HHHHHHH-hCCCCHHHHHHHHCcCHHHHHHHH
Confidence 4677775 488999999999999999887665
No 209
>3f52_A CLP gene regulator (CLGR); helix-turn-helix motif, transcriptional ACTI human pathogen, transcription activator; 1.75A {Corynebacterium glutamicum} PDB: 3f51_A
Probab=40.36 E-value=20 Score=32.33 Aligned_cols=56 Identities=16% Similarity=0.213 Sum_probs=43.8
Q ss_pred chHHHHHHHHHhhCccccccchhhhccChhhhhhhcc-ccccccchhHHHHHHhhhc
Q 002388 219 LNFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLA-DGTFASDLQCKLVKWLSNH 274 (929)
Q Consensus 219 ~~~~~~l~kli~~gkv~v~d~~~~~gis~~~l~~~~~-~~~~~~~~~~k~~~wl~~~ 274 (929)
..|+..||++..+-..+.+++|..+|||+.+|..-.. ....+.+.-.+|.+.|.=.
T Consensus 27 ~~~g~~l~~~R~~~glsq~~lA~~~gis~~~is~~E~g~~~~~~~~l~~la~~l~v~ 83 (117)
T 3f52_A 27 EALGAALRSFRADKGVTLRELAEASRVSPGYLSELERGRKEVSSELLASVCHALGAS 83 (117)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHTTSCHHHHHHHHTTSSCCCHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHCCCCCCCHHHHHHHHHHhCCC
Confidence 4688999999988889999999999999999887765 3345556666777666533
No 210
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=40.10 E-value=2.6 Score=35.01 Aligned_cols=50 Identities=24% Similarity=0.435 Sum_probs=30.6
Q ss_pred CCCCcCcccCCCCCCCCC-EEE--ecccCcccccccccCccCCCCceeccccccc
Q 002388 703 EHPRSCDICRRSETILNP-ILI--CSGCKVAVHLDCYRNAKESTGPWYCELCEEL 754 (929)
Q Consensus 703 e~d~~CsVC~~~E~~~N~-Ll~--Cd~C~vaVHq~CYGi~~~p~g~WlCd~C~~~ 754 (929)
+....|-||+.... ++ +.- |.+....||+.|.-.=....+.+.|+.|.+.
T Consensus 4 ~~~~~CrIC~~~~~--~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~ 56 (60)
T 1vyx_A 4 EDVPVCWICNEELG--NERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVV 56 (60)
T ss_dssp CSCCEETTTTEECS--CCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCB
T ss_pred CCCCEeEEeecCCC--CceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCe
Confidence 34578999997532 33 333 4455559999997421111345788888654
No 211
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=40.09 E-value=17 Score=29.71 Aligned_cols=32 Identities=25% Similarity=0.375 Sum_probs=24.9
Q ss_pred HHHHHHHHhhCccccccchhhhccChhhhhhhcc
Q 002388 222 TLILKKLIDRGKVNVKDIASDIGISPDLLKTTLA 255 (929)
Q Consensus 222 ~~~l~kli~~gkv~v~d~~~~~gis~~~l~~~~~ 255 (929)
..||.-+ -+|. ++++||.++|||+.++...+.
T Consensus 17 ~~il~~~-~~g~-s~~eIA~~l~is~~tV~~~~~ 48 (74)
T 1fse_A 17 REVFELL-VQDK-TTKEIASELFISEKTVRNHIS 48 (74)
T ss_dssp HHHHHHH-TTTC-CHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHH-HcCC-CHHHHHHHHCCCHHHHHHHHH
Confidence 3455444 5676 999999999999999987773
No 212
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=39.74 E-value=20 Score=30.64 Aligned_cols=47 Identities=15% Similarity=0.224 Sum_probs=33.8
Q ss_pred HHHHHHHHhhCccccccchhhhccChhhhhhhccccccccchhHHHHHHh
Q 002388 222 TLILKKLIDRGKVNVKDIASDIGISPDLLKTTLADGTFASDLQCKLVKWL 271 (929)
Q Consensus 222 ~~~l~kli~~gkv~v~d~~~~~gis~~~l~~~~~~~~~~~~~~~k~~~wl 271 (929)
+-|.+.|-.+| .+..++|..+|||+-+|...+... .|.+..+|-+-|
T Consensus 12 ~ri~~~l~~~g-lT~~~LA~~~Gvs~stls~~~~~~--~p~~~~~IA~aL 58 (74)
T 1neq_A 12 ADVIAGLKKRK-LSLSALSRQFGYAPTTLANALERH--WPKGEQIIANAL 58 (74)
T ss_dssp HHHHHHHHTTS-CCHHHHHHHHSSCHHHHHHTTTSS--CHHHHHHHHHHT
T ss_pred HHHHHHHHHcC-CCHHHHHHHHCcCHHHHHHHHcCC--CccHHHHHHHHH
Confidence 55666666555 899999999999999999887542 355554454444
No 213
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=39.19 E-value=12 Score=33.26 Aligned_cols=33 Identities=21% Similarity=0.310 Sum_probs=27.7
Q ss_pred HHHHHHHHhhCccccccchhhhccChhhhhhhcc
Q 002388 222 TLILKKLIDRGKVNVKDIASDIGISPDLLKTTLA 255 (929)
Q Consensus 222 ~~~l~kli~~gkv~v~d~~~~~gis~~~l~~~~~ 255 (929)
..||.-| ..|.+++.|||..+|||+-++...|.
T Consensus 24 ~~IL~~L-~~~~~~~~ela~~l~is~~tv~~~l~ 56 (114)
T 2oqg_A 24 WEILTEL-GRADQSASSLATRLPVSRQAIAKHLN 56 (114)
T ss_dssp HHHHHHH-HHSCBCHHHHHHHSSSCHHHHHHHHH
T ss_pred HHHHHHH-HcCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 3477766 78999999999999999999877663
No 214
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=39.16 E-value=8.8 Score=40.25 Aligned_cols=30 Identities=23% Similarity=0.706 Sum_probs=22.7
Q ss_pred CcceeCCCC--CCceeecCCcCcccccchhhhhh
Q 002388 828 DVCCICRHK--HGICIKCNYGNCQTTFHPTCARS 859 (929)
Q Consensus 828 ~~C~iC~~~--~GacIqC~~~~C~~~FH~~CA~~ 859 (929)
-.|.+|+.. .|.++.|. .|...||..|...
T Consensus 175 c~C~vC~~~~~~~~lL~CD--~C~~~yH~~CL~P 206 (226)
T 3ask_A 175 CACHLCGGRQDPDKQLMCD--ECDMAFHIYCLDP 206 (226)
T ss_dssp TSCSSSCCCCC--CCEECS--SSCCEECSCC--C
T ss_pred CCCcCCCCCCCCCCeEEcC--CCCcceeCccCCC
Confidence 468999974 68899999 8999999999863
No 215
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=39.07 E-value=23 Score=34.71 Aligned_cols=55 Identities=16% Similarity=0.120 Sum_probs=42.2
Q ss_pred chHHHHHHHHHhhCccccccchhhhccChhhhhhhcc-ccccccchhHHHHHHhhh
Q 002388 219 LNFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLA-DGTFASDLQCKLVKWLSN 273 (929)
Q Consensus 219 ~~~~~~l~kli~~gkv~v~d~~~~~gis~~~l~~~~~-~~~~~~~~~~k~~~wl~~ 273 (929)
..|+..||+|..+-..+.+++|..+|||+.+|..-.. ....+.+.-.||.+.|.-
T Consensus 10 ~~~~~~l~~~r~~~gltq~~lA~~~gis~~~is~~e~g~~~p~~~~l~~ia~~l~v 65 (192)
T 1y9q_A 10 SQIANQLKNLRKSRGLSLDATAQLTGVSKAMLGQIERGESSPTIATLWKIASGLEA 65 (192)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHSSCHHHHHHHHTTCSCCCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHCc
Confidence 3578899999999999999999999999999887665 233444555566666643
No 216
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=39.02 E-value=9 Score=34.14 Aligned_cols=32 Identities=9% Similarity=0.193 Sum_probs=26.1
Q ss_pred HHHHHHHHhhCccccccchhhhccChhhhhhhc
Q 002388 222 TLILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (929)
Q Consensus 222 ~~~l~kli~~gkv~v~d~~~~~gis~~~l~~~~ 254 (929)
.-||.-|-..| +++.+||.++|||.-++..-|
T Consensus 20 ~~IL~lL~~~g-~sa~eLAk~LgiSk~aVr~~L 51 (82)
T 1oyi_A 20 CEAIKTIGIEG-ATAAQLTRQLNMEKREVNKAL 51 (82)
T ss_dssp HHHHHHHSSST-EEHHHHHHHSSSCHHHHHHHH
T ss_pred HHHHHHHHHcC-CCHHHHHHHHCcCHHHHHHHH
Confidence 34555566788 999999999999998887766
No 217
>1vz0_A PARB, chromosome partitioning protein PARB; nuclear protein, chromosome segregation, DNA-binding, helix-turn-helix; 2.3A {Thermus thermophilus} SCOP: a.4.14.1 d.268.1.1
Probab=38.84 E-value=16 Score=37.99 Aligned_cols=50 Identities=12% Similarity=0.178 Sum_probs=40.5
Q ss_pred CcchHHHHHHHHHhhCccccccchhhhccChhhhhhhccccccccchhHHH
Q 002388 217 DALNFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLADGTFASDLQCKL 267 (929)
Q Consensus 217 ~s~~~~~~l~kli~~gkv~v~d~~~~~gis~~~l~~~~~~~~~~~~~~~k~ 267 (929)
+-.+.+..+++|++.| .+..+||..+|+|+.++...|.-..+.|+++-.|
T Consensus 119 ~~~E~a~~~~~l~~~g-~t~~~iA~~lG~s~~~V~~~l~l~~l~~~v~~~l 168 (230)
T 1vz0_A 119 SPVEEARGYQALLEMG-LTQEEVARRVGKARSTVANALRLLQLPPEALEAL 168 (230)
T ss_dssp CHHHHHHHHHHHHHTT-CCHHHHHHHHTCCHHHHHHHHHGGGSCHHHHHHH
T ss_pred CHHHHHHHHHHHHHcC-CCHHHHHHHHCcCHHHHHHHHHHHcCCHHHHHHH
Confidence 4577889999999776 6899999999999999988886556667666544
No 218
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=37.07 E-value=19 Score=32.93 Aligned_cols=51 Identities=16% Similarity=0.337 Sum_probs=36.5
Q ss_pred HHHHHHHhhCccccccchhhhccChhhhhhhcc-----------------ccccccchhHHHHHHhhhc
Q 002388 223 LILKKLIDRGKVNVKDIASDIGISPDLLKTTLA-----------------DGTFASDLQCKLVKWLSNH 274 (929)
Q Consensus 223 ~~l~kli~~gkv~v~d~~~~~gis~~~l~~~~~-----------------~~~~~~~~~~k~~~wl~~~ 274 (929)
.||.-|. .|.+++.|||..+|||+-++...|. -..+.++.-..+..||...
T Consensus 22 ~Il~~L~-~~~~~~~eLa~~l~is~~tvs~hL~~L~~~GlV~~~~~gr~~~y~l~~~~~~~l~~~~~~~ 89 (118)
T 3f6o_A 22 AVLGRLS-RGPATVSELAKPFDMALPSFMKHIHFLEDSGWIRTHKQGRVRTCAIEKEPFTAVEAWLAEQ 89 (118)
T ss_dssp HHHHHHH-TCCEEHHHHHTTCCSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECSHHHHHHHHHHHHH
T ss_pred HHHHHHH-hCCCCHHHHHHHhCcCHHHHHHHHHHHHHCCCeEEEecCCEEEEEECHHHHHHHHHHHHHH
Confidence 3666665 6999999999999999998876654 1234455556667777654
No 219
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=36.49 E-value=15 Score=31.79 Aligned_cols=33 Identities=15% Similarity=0.352 Sum_probs=27.6
Q ss_pred HHHHHHHHh-hCccccccchhhhccChhhhhhhc
Q 002388 222 TLILKKLID-RGKVNVKDIASDIGISPDLLKTTL 254 (929)
Q Consensus 222 ~~~l~kli~-~gkv~v~d~~~~~gis~~~l~~~~ 254 (929)
..+|..|+. .|.+++.|||..+|||+-++...|
T Consensus 24 ~~~l~~l~~~~~~~t~~ela~~l~is~~tv~~~l 57 (109)
T 2d1h_A 24 VAVLLKMVEIEKPITSEELADIFKLSKTTVENSL 57 (109)
T ss_dssp HHHHHHHHHHCSCEEHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHH
Confidence 456666776 789999999999999999987766
No 220
>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3
Probab=36.18 E-value=15 Score=32.95 Aligned_cols=32 Identities=25% Similarity=0.557 Sum_probs=26.2
Q ss_pred CcCcccCCCCCCCCCEEEecccCcccccccccCc
Q 002388 706 RSCDICRRSETILNPILICSGCKVAVHLDCYRNA 739 (929)
Q Consensus 706 ~~CsVC~~~E~~~N~Ll~Cd~C~vaVHq~CYGi~ 739 (929)
..|++|.+.. .+-...|..|++.+|..|.-.+
T Consensus 48 ~~C~~C~~~~--~~~~Y~C~~C~f~lH~~Ca~~p 79 (89)
T 1v5n_A 48 YTCDKCEEEG--TIWSYHCDECDFDLHAKCALNE 79 (89)
T ss_dssp CCCTTTSCCC--CSCEEECTTTCCCCCHHHHHCS
T ss_pred eEeCCCCCcC--CCcEEEcCCCCCeEcHHhcCCC
Confidence 5799999853 3567899999999999997543
No 221
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=35.88 E-value=22 Score=27.54 Aligned_cols=48 Identities=21% Similarity=0.491 Sum_probs=30.2
Q ss_pred CCCcCcccCCCCCCCCCEEEecccCcccccccccCccCCCCceecccccc
Q 002388 704 HPRSCDICRRSETILNPILICSGCKVAVHLDCYRNAKESTGPWYCELCEE 753 (929)
Q Consensus 704 ~d~~CsVC~~~E~~~N~Ll~Cd~C~vaVHq~CYGi~~~p~g~WlCd~C~~ 753 (929)
....|.||++.-...+..+..-.|+-.||..|...-.. ....|..|..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~--~~~~CP~Cr~ 51 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLK--EGYRCPLCSG 51 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHH--HTCCCTTSCC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHH--cCCcCCCCCC
Confidence 34679999985433345566677999999999742110 1145666654
No 222
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=35.67 E-value=15 Score=32.83 Aligned_cols=32 Identities=19% Similarity=0.267 Sum_probs=26.6
Q ss_pred HHHHHHHHhhCccccccchhhhccChhhhhhhc
Q 002388 222 TLILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (929)
Q Consensus 222 ~~~l~kli~~gkv~v~d~~~~~gis~~~l~~~~ 254 (929)
..||.-|. .|..++.|||..+|||+-++...|
T Consensus 29 ~~IL~~L~-~~~~~~~ela~~l~is~stvs~~L 60 (106)
T 1r1u_A 29 IRIMELLS-VSEASVGHISHQLNLSQSNVSHQL 60 (106)
T ss_dssp HHHHHHHH-HCCBCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHH-hCCCCHHHHHHHHCcCHHHHHHHH
Confidence 34666666 788999999999999999887666
No 223
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, clostridium diffic structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile}
Probab=34.85 E-value=30 Score=31.55 Aligned_cols=56 Identities=18% Similarity=0.213 Sum_probs=43.6
Q ss_pred CcchHHHHHHHHHhhCccccccchhhhccChhhhhhhcc-ccccccchhHHHHHHhh
Q 002388 217 DALNFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLA-DGTFASDLQCKLVKWLS 272 (929)
Q Consensus 217 ~s~~~~~~l~kli~~gkv~v~d~~~~~gis~~~l~~~~~-~~~~~~~~~~k~~~wl~ 272 (929)
+-..|..-||+|...-..+.+++|..+|||+.+|..-.. ....+.+.-.+|.+.|.
T Consensus 9 ~~~~~g~~lk~~R~~~glsq~~lA~~~gis~~~is~~E~g~~~p~~~~l~~ia~~l~ 65 (126)
T 3ivp_A 9 DFRALGLAIKEARKKQGLTREQVGAMIEIDPRYLTNIENKGQHPSLQVLYDLVSLLN 65 (126)
T ss_dssp CTHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHSCCCCCHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHcCCCHHHHHHHhCcCHHHHHHHHCCCCCCCHHHHHHHHHHHC
Confidence 445788999999999999999999999999999876665 33445555566766665
No 224
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=34.84 E-value=15 Score=36.03 Aligned_cols=37 Identities=14% Similarity=0.308 Sum_probs=31.3
Q ss_pred CcchHHHHHHHHHhhCccccccchhhhccChhhhhhhc
Q 002388 217 DALNFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (929)
Q Consensus 217 ~s~~~~~~l~kli~~gkv~v~d~~~~~gis~~~l~~~~ 254 (929)
+..|. .||+.|-+.|.++++|||.++|+|+.++...|
T Consensus 16 d~~d~-~IL~~L~~~~~~s~~eLA~~lglS~~tv~~~l 52 (171)
T 2ia0_A 16 DDLDR-NILRLLKKDARLTISELSEQLKKPESTIHFRI 52 (171)
T ss_dssp CHHHH-HHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHH
T ss_pred CHHHH-HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHH
Confidence 44555 57888989999999999999999999887665
No 225
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=33.11 E-value=19 Score=37.74 Aligned_cols=49 Identities=12% Similarity=0.226 Sum_probs=43.0
Q ss_pred ccccccchhhhccChhhhhhhcc-ccccccchhHHHHHHhhhcccccccc
Q 002388 233 KVNVKDIASDIGISPDLLKTTLA-DGTFASDLQCKLVKWLSNHAYLGGLL 281 (929)
Q Consensus 233 kv~v~d~~~~~gis~~~l~~~~~-~~~~~~~~~~k~~~wl~~~~~~~~~~ 281 (929)
|++++|||.+.|+|.-|+--+|+ ....++..+.||.+-.+..=|.+...
T Consensus 2 ~~ti~dvA~~agVS~~TVSrvln~~~~vs~~tr~rV~~aa~~lgY~pn~~ 51 (332)
T 2hsg_A 2 NVTIYDVAREASVSMATVSRVVNGNPNVKPSTRKKVLETIERLGYRPNAV 51 (332)
T ss_dssp CCCHHHHHHHTTSCHHHHHHHHTTCTTSCHHHHHHHHHHHHHHTCCSCHH
T ss_pred CCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHCCCcCHH
Confidence 58999999999999999999999 45689999999999998888876543
No 226
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=32.69 E-value=26 Score=28.53 Aligned_cols=46 Identities=17% Similarity=0.155 Sum_probs=32.6
Q ss_pred HHHHHhhCccccccchhhhccChhhhhhhccccccccch-hHHHHHHhhhc
Q 002388 225 LKKLIDRGKVNVKDIASDIGISPDLLKTTLADGTFASDL-QCKLVKWLSNH 274 (929)
Q Consensus 225 l~kli~~gkv~v~d~~~~~gis~~~l~~~~~~~~~~~~~-~~k~~~wl~~~ 274 (929)
++++|+.|. +-.++|..+|||+.++-.-. . ..|.. ..+|-+.|...
T Consensus 3 ~~~~i~~~~-tq~~lA~~lGvs~~~Vs~we--~-~~p~~~~~~i~~~~~g~ 49 (61)
T 1rzs_A 3 KKDVIDHFG-TQRAVAKALGISDAAVSQWK--E-VIPEKDAYRLEIVTAGA 49 (61)
T ss_dssp HHHHHHHHS-SHHHHHHHHTCCHHHHHHCC--S-BCCHHHHHHHHHHTTSC
T ss_pred HHHHHHHcC-CHHHHHHHhCCCHHHHHHHH--h-hCCHHHHHHHHHHHCCC
Confidence 467888885 99999999999999886655 2 23543 34566665544
No 227
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomic binding; 1.80A {Silicibacter pomeroyi}
Probab=32.25 E-value=38 Score=28.94 Aligned_cols=53 Identities=8% Similarity=0.009 Sum_probs=39.7
Q ss_pred hHHHHHHHHHhhCccccccchhhhccChhhhhhhcc-ccccccchhHHHHHHhh
Q 002388 220 NFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLA-DGTFASDLQCKLVKWLS 272 (929)
Q Consensus 220 ~~~~~l~kli~~gkv~v~d~~~~~gis~~~l~~~~~-~~~~~~~~~~k~~~wl~ 272 (929)
.|...||++..+=..+..|+|..+|||+.+|..--. ....+.+.-.+|.+.|.
T Consensus 14 ~~g~~l~~~R~~~gltq~elA~~~gis~~~is~~E~G~~~p~~~~l~~ia~~l~ 67 (86)
T 3eus_A 14 YLCQRLRQARLDAGLTQADLAERLDKPQSFVAKVETRERRLDVIEFAKWMAACE 67 (86)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHTTCCHHHHHHHHTTSSCCBHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHhCcCHHHHHHHHCCCCCCCHHHHHHHHHHcC
Confidence 378889999998899999999999999988876554 23344444455655554
No 228
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=31.98 E-value=23 Score=32.85 Aligned_cols=26 Identities=23% Similarity=0.514 Sum_probs=22.7
Q ss_pred hhCccccccchhhhccChhhhhhhcc
Q 002388 230 DRGKVNVKDIASDIGISPDLLKTTLA 255 (929)
Q Consensus 230 ~~gkv~v~d~~~~~gis~~~l~~~~~ 255 (929)
+.|.+++.|||..+|||+-++...|.
T Consensus 19 ~~~~~~~~ela~~l~vs~~tvs~~l~ 44 (142)
T 1on2_A 19 EKGYARVSDIAEALAVHPSSVTKMVQ 44 (142)
T ss_dssp HHSSCCHHHHHHHHTSCHHHHHHHHH
T ss_pred hcCCCCHHHHHHHhCCCHHHHHHHHH
Confidence 56899999999999999999887763
No 229
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=31.90 E-value=25 Score=28.08 Aligned_cols=31 Identities=3% Similarity=0.219 Sum_probs=25.2
Q ss_pred HHHHHh-hCccccccchhhh-----ccChhhhhhhcc
Q 002388 225 LKKLID-RGKVNVKDIASDI-----GISPDLLKTTLA 255 (929)
Q Consensus 225 l~kli~-~gkv~v~d~~~~~-----gis~~~l~~~~~ 255 (929)
|..|+. .|.+++.||+.++ |||..|+--.|.
T Consensus 10 i~~ll~~~~~~t~~el~~~l~~~~~~vs~~Tv~R~L~ 46 (64)
T 2p5k_A 10 IREIITSNEIETQDELVDMLKQDGYKVTQATVSRDIK 46 (64)
T ss_dssp HHHHHHHSCCCSHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHHcCCCCCHHHHHHHHHHhCCCcCHHHHHHHHH
Confidence 344554 6789999999999 999999888873
No 230
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=31.83 E-value=21 Score=28.29 Aligned_cols=26 Identities=27% Similarity=0.321 Sum_probs=22.0
Q ss_pred HhhCccccccchhhhccChhhhhhhcc
Q 002388 229 IDRGKVNVKDIASDIGISPDLLKTTLA 255 (929)
Q Consensus 229 i~~gkv~v~d~~~~~gis~~~l~~~~~ 255 (929)
+-+|. +.++||.++|||+.++...+.
T Consensus 10 ~~~g~-s~~eIA~~l~is~~tV~~~~~ 35 (61)
T 2jpc_A 10 IDEGY-TNHGISEKLHISIKTVETHRM 35 (61)
T ss_dssp HHTSC-CSHHHHHHTCSCHHHHHHHHH
T ss_pred HHcCC-CHHHHHHHhCCCHHHHHHHHH
Confidence 45675 899999999999999988763
No 231
>1weq_A PHD finger protein 7; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=31.48 E-value=30 Score=31.04 Aligned_cols=35 Identities=23% Similarity=0.647 Sum_probs=28.6
Q ss_pred CCEEEecccCc-ccccccccCccCCCCceeccccccc
Q 002388 719 NPILICSGCKV-AVHLDCYRNAKESTGPWYCELCEEL 754 (929)
Q Consensus 719 N~Ll~Cd~C~v-aVHq~CYGi~~~p~g~WlCd~C~~~ 754 (929)
-+||.|..|+. .+|..|.... .....|.|..|...
T Consensus 44 W~L~lC~~Cgs~gtH~~Cs~l~-~~~~~weC~~C~~v 79 (85)
T 1weq_A 44 WRLILCATCGSHGTHRDCSSLR-PNSKKWECNECLPA 79 (85)
T ss_dssp TBCEECSSSCCCEECSGGGTCC-TTCSCCCCTTTSCC
T ss_pred EEEEeCcccCCchhHHHHhCCc-CCCCCEECCcCccc
Confidence 47999999985 6999997643 35788999999865
No 232
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=31.37 E-value=21 Score=31.43 Aligned_cols=31 Identities=6% Similarity=0.229 Sum_probs=25.8
Q ss_pred HHHHHhhCccccccchhhhccChhhhhhhcc
Q 002388 225 LKKLIDRGKVNVKDIASDIGISPDLLKTTLA 255 (929)
Q Consensus 225 l~kli~~gkv~v~d~~~~~gis~~~l~~~~~ 255 (929)
+.+-+..+..+|.|||.++|||+..|...+.
T Consensus 11 i~~~~~~~~~~~~~lA~~~~~S~~~l~r~fk 41 (103)
T 3lsg_A 11 IEESYTDSQFTLSVLSEKLDLSSGYLSIMFK 41 (103)
T ss_dssp HHHHTTCTTCCHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHccCCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 3344445689999999999999999998887
No 233
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=31.20 E-value=20 Score=37.61 Aligned_cols=46 Identities=24% Similarity=0.554 Sum_probs=32.0
Q ss_pred CCcCcccCCCCCCCCCEEEecccCcccccccccCccCCCCceecccccc
Q 002388 705 PRSCDICRRSETILNPILICSGCKVAVHLDCYRNAKESTGPWYCELCEE 753 (929)
Q Consensus 705 d~~CsVC~~~E~~~N~Ll~Cd~C~vaVHq~CYGi~~~p~g~WlCd~C~~ 753 (929)
...|.+|..--. +-..|..|+..+|..|+.......+.-.|..|..
T Consensus 180 i~~C~iC~~iv~---~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~ 225 (238)
T 3nw0_A 180 VKICNICHSLLI---QGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCND 225 (238)
T ss_dssp CCBCTTTCSBCS---SCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCC
T ss_pred CCcCcchhhHHh---CCcccCccChHHHHHHHHHHHHhCCCCCCCCCCC
Confidence 467999998543 2389999999999999954322233345666654
No 234
>2l49_A C protein; P2 bacteriophage, P2 C, direct repeats, DNA-binding protein, binding protein; NMR {Enterobacteria phage P2} PDB: 2xcj_A
Probab=31.17 E-value=19 Score=31.20 Aligned_cols=36 Identities=8% Similarity=0.035 Sum_probs=31.2
Q ss_pred hHHHHHHHHHhhCccccccchhhhccChhhhhhhcc
Q 002388 220 NFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLA 255 (929)
Q Consensus 220 ~~~~~l~kli~~gkv~v~d~~~~~gis~~~l~~~~~ 255 (929)
.|.-.||++..+-.++..++|..+|||+.+|..-..
T Consensus 4 ~~~~~l~~~r~~~gltq~~lA~~~gis~~~is~~e~ 39 (99)
T 2l49_A 4 TISEKIVLMRKSEYLSRQQLADLTGVPYGTLSYYES 39 (99)
T ss_dssp CTTHHHHHHHHHTTCCHHHHHHHHCCCHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 367788999999899999999999999999877664
No 235
>3mlf_A Transcriptional regulator; structural genomics, helix-turn-helix XRE-family like protei transcription regulator, PSI-2; 2.60A {Staphylococcus aureus subsp}
Probab=31.15 E-value=29 Score=31.49 Aligned_cols=53 Identities=13% Similarity=0.106 Sum_probs=40.1
Q ss_pred HHHHHHHHHhhCccccccchhhhccChhhhhhhcc-ccccccchhHHHHHHhhh
Q 002388 221 FTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLA-DGTFASDLQCKLVKWLSN 273 (929)
Q Consensus 221 ~~~~l~kli~~gkv~v~d~~~~~gis~~~l~~~~~-~~~~~~~~~~k~~~wl~~ 273 (929)
++--||+|...-..+.+++|..+|||+.+|..-.. ....+.+.-.+|.+.|.=
T Consensus 24 ~g~~Lk~~R~~~gltq~elA~~~gis~~~is~~E~G~~~ps~~~l~~ia~~l~v 77 (111)
T 3mlf_A 24 AMKTLKELRTDYGLTQKELGDLFKVSSRTIQNMEKDSTNIKDSLLSKYMSAFNV 77 (111)
T ss_dssp SCEEHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHHCCTTCCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHCCCCCCCHHHHHHHHHHhCc
Confidence 34457888888889999999999999999877665 334555666777777653
No 236
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=31.01 E-value=18 Score=34.85 Aligned_cols=30 Identities=27% Similarity=0.664 Sum_probs=26.0
Q ss_pred CcceeCCCCCCceeecCCcCcccccchhhhhhc
Q 002388 828 DVCCICRHKHGICIKCNYGNCQTTFHPTCARSA 860 (929)
Q Consensus 828 ~~C~iC~~~~GacIqC~~~~C~~~FH~~CA~~a 860 (929)
..|.+|+. +|..+-|. .|.+.||..|....
T Consensus 58 ~~C~vC~d-GG~LlcCd--~Cpr~Fc~~Cl~~~ 87 (129)
T 3ql9_A 58 EQCRWCAE-GGNLICCD--FCHNAFCKKCILRN 87 (129)
T ss_dssp SSCTTTCC-CSEEEECS--SSSCEEEHHHHHHH
T ss_pred CcCeecCC-CCeeEecC--CCchhhhHHHhCCC
Confidence 67999997 58888887 89999999999753
No 237
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=30.56 E-value=23 Score=32.39 Aligned_cols=31 Identities=23% Similarity=0.375 Sum_probs=26.0
Q ss_pred HHHHHHHhhCccccccchhhhccChhhhhhhc
Q 002388 223 LILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (929)
Q Consensus 223 ~~l~kli~~gkv~v~d~~~~~gis~~~l~~~~ 254 (929)
.||+-|. .|..++.|||..+|||+-++...|
T Consensus 25 ~IL~~L~-~~~~~~~eLa~~lgis~stvs~~L 55 (118)
T 2jsc_A 25 RILVALL-DGVCYPGQLAAHLGLTRSNVSNHL 55 (118)
T ss_dssp HHHHHHH-TTCCSTTTHHHHHSSCHHHHHHHH
T ss_pred HHHHHHH-cCCCCHHHHHHHHCcCHHHHHHHH
Confidence 4677666 688999999999999999887666
No 238
>3lfp_A CSP231I C protein; transcriptional regulator, DNA binding protein, helix-turn-H restriction-modification, transcription; 2.00A {Citrobacter SP} PDB: 3lis_A
Probab=30.12 E-value=29 Score=30.28 Aligned_cols=52 Identities=15% Similarity=0.112 Sum_probs=37.6
Q ss_pred HHHHHHHHHhhCccccccchhhhccChhh----hhhhcc-ccccccchhHHHHHHhh
Q 002388 221 FTLILKKLIDRGKVNVKDIASDIGISPDL----LKTTLA-DGTFASDLQCKLVKWLS 272 (929)
Q Consensus 221 ~~~~l~kli~~gkv~v~d~~~~~gis~~~----l~~~~~-~~~~~~~~~~k~~~wl~ 272 (929)
|+.-||++..+-..+..++|..+|||+.+ |..-.. ....+.+.-.+|.+.|.
T Consensus 2 ~g~~lk~~R~~~glsq~~lA~~~gis~~~~~~~is~~E~g~~~p~~~~l~~la~~l~ 58 (98)
T 3lfp_A 2 LIRRLKDARLRAGISQEKLGVLAGIDEASASARMNQYEKGKHAPDFEMANRLAKVLK 58 (98)
T ss_dssp CHHHHHHHHHHHTCCHHHHHHHTTCCHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHhCCCcchhhhHHHHHHCCCCCCCHHHHHHHHHHHC
Confidence 34567888888889999999999999999 444443 33455555666777665
No 239
>3kkc_A TETR family transcriptional regulator; APC20805, structural genomics, PSI-2, protein structure initiative; 2.50A {Streptococcus agalactiae 2603V}
Probab=30.05 E-value=19 Score=33.49 Aligned_cols=22 Identities=14% Similarity=0.297 Sum_probs=14.4
Q ss_pred hhC--ccccccchhhhccChhhhh
Q 002388 230 DRG--KVNVKDIASDIGISPDLLK 251 (929)
Q Consensus 230 ~~g--kv~v~d~~~~~gis~~~l~ 251 (929)
++| +++|.|||.+.|||.-+|-
T Consensus 27 ~~G~~~~tv~~Ia~~agvs~~t~Y 50 (177)
T 3kkc_A 27 ENDYSKITVQDVIGLANVGRSTFY 50 (177)
T ss_dssp TSCTTTCCHHHHHHHHCCCHHHHT
T ss_pred hCChhHhhHHHHHHHhCCcHhhHH
Confidence 445 6677777777777766554
No 240
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=29.98 E-value=28 Score=32.04 Aligned_cols=38 Identities=16% Similarity=0.128 Sum_probs=29.1
Q ss_pred CcchHHHHHHHHHh----hCccccccchhhhccChhhhhhhc
Q 002388 217 DALNFTLILKKLID----RGKVNVKDIASDIGISPDLLKTTL 254 (929)
Q Consensus 217 ~s~~~~~~l~kli~----~gkv~v~d~~~~~gis~~~l~~~~ 254 (929)
-+....-+|+.|+. .|.++++|||..+|||+-++...|
T Consensus 11 lt~~~~~~L~~l~~l~~~~~~~s~~ela~~l~is~~tv~~~l 52 (139)
T 2x4h_A 11 LSRREFSYLLTIKRYNDSGEGAKINRIAKDLKIAPSSVFEEV 52 (139)
T ss_dssp CCHHHHHHHHHHHHHHTTTSCBCHHHHHHHHTCCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhcCCCcCHHHHHHHhCCChHHHHHHH
Confidence 34445566666654 578999999999999999887665
No 241
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=29.73 E-value=36 Score=31.13 Aligned_cols=58 Identities=17% Similarity=0.252 Sum_probs=40.2
Q ss_pred cchHHHHHHHHH-hhCccccccchhhhccChhhhhhhcc------c----------------cccccchhHHHHHHhhhc
Q 002388 218 ALNFTLILKKLI-DRGKVNVKDIASDIGISPDLLKTTLA------D----------------GTFASDLQCKLVKWLSNH 274 (929)
Q Consensus 218 s~~~~~~l~kli-~~gkv~v~d~~~~~gis~~~l~~~~~------~----------------~~~~~~~~~k~~~wl~~~ 274 (929)
|.+|-.-+-+++ +.|...+.+||.++|||+-+|-.-+. + ....|++-.-|+.|+...
T Consensus 9 t~e~K~~iv~~~~~~g~~~~~~~A~~~gvs~stl~~~~~~~~~~~~~~~~~~~~~~~~kr~r~~~~~~~E~~L~~Wi~~~ 88 (131)
T 1hlv_A 9 TFREKSRIIQEVEENPDLRKGEIARRFNIPPSTLSTILKNKRAILASERKYGVASTCRKTNKLSPYDKLEGLLIAWFQQI 88 (131)
T ss_dssp CHHHHHHHHHHHHHCTTSCHHHHHHHHTCCHHHHHHHHHTHHHHHHHHHHHGGGGGTCCCCCCCTTHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCCcHHHHHHHhCCCHHHHHHHHhchhhhcchhhhccccchhhcccCCCCCHHHHHHHHHHHHHH
Confidence 445554444555 88988888999999999877744332 1 125677888889998765
Q ss_pred c
Q 002388 275 A 275 (929)
Q Consensus 275 ~ 275 (929)
-
T Consensus 89 ~ 89 (131)
T 1hlv_A 89 R 89 (131)
T ss_dssp G
T ss_pred H
Confidence 3
No 242
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=29.69 E-value=21 Score=32.00 Aligned_cols=32 Identities=25% Similarity=0.408 Sum_probs=27.6
Q ss_pred HHHHHHHHhhCccccccchhhh-ccChhhhhhhc
Q 002388 222 TLILKKLIDRGKVNVKDIASDI-GISPDLLKTTL 254 (929)
Q Consensus 222 ~~~l~kli~~gkv~v~d~~~~~-gis~~~l~~~~ 254 (929)
..||.-|. .|..++.|||..+ |||+-+|...|
T Consensus 17 ~~IL~~L~-~~~~~~~eLa~~l~~is~~tls~~L 49 (107)
T 2hzt_A 17 XVILXHLT-HGKKRTSELKRLMPNITQKMLTQQL 49 (107)
T ss_dssp HHHHHHHT-TCCBCHHHHHHHCTTSCHHHHHHHH
T ss_pred HHHHHHHH-hCCCCHHHHHHHhcCCCHHHHHHHH
Confidence 45777776 7999999999999 99999998776
No 243
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=29.57 E-value=21 Score=33.99 Aligned_cols=33 Identities=18% Similarity=0.337 Sum_probs=29.5
Q ss_pred HHHHHHHHhhCccccccchhhh-ccChhhhhhhcc
Q 002388 222 TLILKKLIDRGKVNVKDIASDI-GISPDLLKTTLA 255 (929)
Q Consensus 222 ~~~l~kli~~gkv~v~d~~~~~-gis~~~l~~~~~ 255 (929)
.+||.-|. .|...+.||+..+ |||+-+|...|.
T Consensus 29 l~IL~~L~-~g~~rf~eL~~~l~gIs~~~Ls~~L~ 62 (131)
T 4a5n_A 29 GILFYHMI-DGKKRFNEFRRICPSITQRMLTLQLR 62 (131)
T ss_dssp HHHHHHHT-TSCBCHHHHHHHCTTSCHHHHHHHHH
T ss_pred HHHHHHHh-cCCcCHHHHHHHhcccCHHHHHHHHH
Confidence 57888887 8999999999999 999999988873
No 244
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=29.39 E-value=96 Score=29.34 Aligned_cols=37 Identities=19% Similarity=0.223 Sum_probs=28.6
Q ss_pred cchHHHHHHHHHhhCccccccchhhhccChhhhhhhcc
Q 002388 218 ALNFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLA 255 (929)
Q Consensus 218 s~~~~~~l~kli~~gkv~v~d~~~~~gis~~~l~~~~~ 255 (929)
|.++-..+-.|+++| .++.+||.++|||+.++..-+.
T Consensus 27 s~e~r~~ii~l~~~G-~s~~~IA~~lgis~~TV~rwl~ 63 (159)
T 2k27_A 27 PEVVRQRIVDLAHQG-VRPCDISRQLRVSHGCVSKILG 63 (159)
T ss_dssp CHHHHHHHHHHHHHT-CCHHHHHHHHTCCSHHHHHHHC
T ss_pred CHHHHHHHHHHHHcC-CCHHHHHHHHCcCHHHHHHHHH
Confidence 455555555677788 6999999999999998876554
No 245
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=29.34 E-value=8.9 Score=34.79 Aligned_cols=50 Identities=22% Similarity=0.535 Sum_probs=37.6
Q ss_pred CCCcCcccCCCC--C-CCCCEEEecccCcccccccccCccCCCCceeccccccc
Q 002388 704 HPRSCDICRRSE--T-ILNPILICSGCKVAVHLDCYRNAKESTGPWYCELCEEL 754 (929)
Q Consensus 704 ~d~~CsVC~~~E--~-~~N~Ll~Cd~C~vaVHq~CYGi~~~p~g~WlCd~C~~~ 754 (929)
+..+|.||.+.- + .++.++-|..|.+.|-..||- ....++.-.|.+|+..
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyE-YErkeG~q~CpqCktr 67 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYE-YERREGTQNCPQCKTR 67 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHH-HHHHTSCSSCTTTCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHH-HHHhccCccccccCCc
Confidence 346799999853 2 356788999999999999994 2234667778888654
No 246
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=29.18 E-value=23 Score=32.08 Aligned_cols=33 Identities=12% Similarity=0.186 Sum_probs=28.8
Q ss_pred HHHHHHHHhhCccccccchhhhccChhhhhhhc
Q 002388 222 TLILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (929)
Q Consensus 222 ~~~l~kli~~gkv~v~d~~~~~gis~~~l~~~~ 254 (929)
..||.-|.+.|.++++|||..+|||+-++...|
T Consensus 32 ~~iL~~l~~~~~~~~~ela~~l~~s~~tvs~~l 64 (138)
T 3bpv_A 32 VACLLRIHREPGIKQDELATFFHVDKGTIARTL 64 (138)
T ss_dssp HHHHHHHHHSTTCBHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHH
Confidence 568888888899999999999999998876655
No 247
>3qkx_A Uncharacterized HTH-type transcriptional regulato; structural genomics, joint center for structural genomics; HET: MSE; 2.35A {Haemophilus influenzae}
Probab=28.96 E-value=27 Score=32.48 Aligned_cols=30 Identities=7% Similarity=0.223 Sum_probs=22.8
Q ss_pred HHHHHhhC--ccccccchhhhccChhhhhhhc
Q 002388 225 LKKLIDRG--KVNVKDIASDIGISPDLLKTTL 254 (929)
Q Consensus 225 l~kli~~g--kv~v~d~~~~~gis~~~l~~~~ 254 (929)
++-+.++| +++|.|||.+.|||.-+|-.-.
T Consensus 18 ~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F 49 (188)
T 3qkx_A 18 DRLMAREGLNQLSMLKLAKEANVAAGTIYLYF 49 (188)
T ss_dssp HHHHHHSCSTTCCHHHHHHHHTCCHHHHHHHS
T ss_pred HHHHHhcCcccCCHHHHHHHhCCCcchHHHHc
Confidence 44455667 7999999999999988775443
No 248
>1dw9_A Cyanate lyase; cyanate degradation, structural genomics, PSI, protei structure initiative, midwest center for structural genomic; HET: SO4; 1.65A {Escherichia coli} SCOP: a.35.1.4 d.72.1.1 PDB: 1dwk_A* 2ivq_A 2ivb_A 2iu7_A 2iv1_A 2iuo_A 2ivg_A
Probab=28.70 E-value=49 Score=32.81 Aligned_cols=60 Identities=12% Similarity=0.161 Sum_probs=40.9
Q ss_pred HHHHHHHHHhhCccccccchhhhccChhhhhhhcc-ccccccchhHHHHH----------Hhhhccccccc
Q 002388 221 FTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLA-DGTFASDLQCKLVK----------WLSNHAYLGGL 280 (929)
Q Consensus 221 ~~~~l~kli~~gkv~v~d~~~~~gis~~~l~~~~~-~~~~~~~~~~k~~~----------wl~~~~~~~~~ 280 (929)
+...|.+.-.+-..+-++||..||+|+.-+.+++. ..+++++.--||.+ |||...|=|+.
T Consensus 14 ~~~~I~~AK~~KGLTwe~IAe~iG~S~v~vtaa~lGQ~~ls~e~A~kLa~~LgL~~e~~~~l~~~P~rg~~ 84 (156)
T 1dw9_A 14 LADAILLSKAKKDLSFAEIADGTGLAEAFVTAALLGQQALPADAARLVGAKLDLDEDSILLLQMIPLRGCI 84 (156)
T ss_dssp HHHHHHHHHHHTTCCHHHHHTTSSSCHHHHHHHHTTSSCCCHHHHHHHHHHTTCCHHHHHHTTSBCCCCCC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHhCcCHHHHHHHHcCCCCCCHHHHHHHHHHhCcCHHHHHHHhcCCcCCCC
Confidence 34444444456678999999999999999999887 55566655555544 66655554433
No 249
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=28.60 E-value=28 Score=28.50 Aligned_cols=33 Identities=6% Similarity=0.265 Sum_probs=26.7
Q ss_pred ccccccchhhhccChhhhhhhccccccccchhHHHHHHhhhcc
Q 002388 233 KVNVKDIASDIGISPDLLKTTLADGTFASDLQCKLVKWLSNHA 275 (929)
Q Consensus 233 kv~v~d~~~~~gis~~~l~~~~~~~~~~~~~~~k~~~wl~~~~ 275 (929)
-.+.+|||..+|||+.++...+ .++++.|....
T Consensus 25 g~s~~eIA~~lgis~~tV~~~~----------~ra~~kLr~~~ 57 (68)
T 2p7v_B 25 DYTLEEVGKQFDVTRERIRQIE----------AKALRKLRHPS 57 (68)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHH----------HHHHHGGGSCC
T ss_pred CCCHHHHHHHHCcCHHHHHHHH----------HHHHHHHHHHH
Confidence 4799999999999999998876 56667776553
No 250
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=28.56 E-value=26 Score=31.10 Aligned_cols=39 Identities=23% Similarity=0.452 Sum_probs=31.6
Q ss_pred CcchHHHHHHHHHhhCcc-------ccccchhhhccChhhhhhhcc
Q 002388 217 DALNFTLILKKLIDRGKV-------NVKDIASDIGISPDLLKTTLA 255 (929)
Q Consensus 217 ~s~~~~~~l~kli~~gkv-------~v~d~~~~~gis~~~l~~~~~ 255 (929)
-...++--|+..|..|.. ++.+||.++|||..++..+|.
T Consensus 12 ~~~~l~~~i~~~I~~~~l~~g~~lps~~eLa~~~~vSr~tvr~al~ 57 (102)
T 1v4r_A 12 GYADVATHFRTLIKSGELAPGDTLPSVADIRAQFGVAAKTVSRALA 57 (102)
T ss_dssp CHHHHHHHHHHHTTTTSCCTTSBCCCHHHHHHHSSSCTTHHHHHTT
T ss_pred HHHHHHHHHHHHHHhCCCCCcCCCcCHHHHHHHHCcCHHHHHHHHH
Confidence 345667778888877654 899999999999999999883
No 251
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=28.52 E-value=25 Score=31.84 Aligned_cols=33 Identities=12% Similarity=0.146 Sum_probs=28.8
Q ss_pred HHHHHHHHhhCccccccchhhhccChhhhhhhc
Q 002388 222 TLILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (929)
Q Consensus 222 ~~~l~kli~~gkv~v~d~~~~~gis~~~l~~~~ 254 (929)
..||.-|.+.|.++++|||..+||++-++...|
T Consensus 41 ~~iL~~l~~~~~~t~~ela~~l~~~~~tvs~~l 73 (140)
T 2nnn_A 41 WAALVRLGETGPCPQNQLGRLTAMDAATIKGVV 73 (140)
T ss_dssp HHHHHHHHHHSSBCHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHH
Confidence 568888888999999999999999998876655
No 252
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=27.95 E-value=25 Score=32.52 Aligned_cols=33 Identities=3% Similarity=0.305 Sum_probs=29.0
Q ss_pred HHHHHHHHhhCc--cccccchhhhccChhhhhhhc
Q 002388 222 TLILKKLIDRGK--VNVKDIASDIGISPDLLKTTL 254 (929)
Q Consensus 222 ~~~l~kli~~gk--v~v~d~~~~~gis~~~l~~~~ 254 (929)
..||.-|.+.|. +++.+||..+|+|.-++...|
T Consensus 29 ~~il~~L~~~~~~~~t~~eLa~~l~~s~sTV~r~L 63 (123)
T 3r0a_A 29 LNVMKSFLNEPDRWIDTDALSKSLKLDVSTVQRSV 63 (123)
T ss_dssp HHHHHHHHHSTTCCEEHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHCCCCCcCHHHHHHHHCcCHHHHHHHH
Confidence 468888998888 999999999999998887766
No 253
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=27.70 E-value=47 Score=27.94 Aligned_cols=51 Identities=20% Similarity=0.138 Sum_probs=35.3
Q ss_pred hHHHHHHHHHhhCccccccchhhhccChhhhhhhcccc--ccccchhHHHHHHhh
Q 002388 220 NFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLADG--TFASDLQCKLVKWLS 272 (929)
Q Consensus 220 ~~~~~l~kli~~gkv~v~d~~~~~gis~~~l~~~~~~~--~~~~~~~~k~~~wl~ 272 (929)
.|+..||++..+- +..++|..+|||+.+|..-.... ....+.-.+|.+.|.
T Consensus 16 ~~g~~l~~~R~~~--sq~~lA~~~gis~~~is~~E~g~~~~p~~~~l~~ia~~l~ 68 (86)
T 2ofy_A 16 RLGELLRSARGDM--SMVTVAFDAGISVETLRKIETGRIATPAFFTIAAVARVLD 68 (86)
T ss_dssp HHHHHHHHHHTTS--CHHHHHHHHTCCHHHHHHHHTTCCSSCBHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHC--CHHHHHHHhCCCHHHHHHHHcCCCCCCCHHHHHHHHHHhC
Confidence 3667788877555 99999999999999987766532 234444456655553
No 254
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=27.65 E-value=23 Score=37.73 Aligned_cols=50 Identities=16% Similarity=0.287 Sum_probs=41.5
Q ss_pred hCccccccchhhhccChhhhhhhcc-ccccccchhHHHHHHhhhcccc-ccc
Q 002388 231 RGKVNVKDIASDIGISPDLLKTTLA-DGTFASDLQCKLVKWLSNHAYL-GGL 280 (929)
Q Consensus 231 ~gkv~v~d~~~~~gis~~~l~~~~~-~~~~~~~~~~k~~~wl~~~~~~-~~~ 280 (929)
..+++++|||.+.|+|.-|+--+|+ ....++....||.+-.+..-|. +..
T Consensus 7 ~~~~Ti~diA~~aGVS~~TVSrvLn~~~~Vs~~tr~rV~~~a~~lgY~~pn~ 58 (366)
T 3h5t_A 7 QQYGTLASIAAKLGISRTTVSNAYNRPEQLSAELRQRILDTAEDMGYLGPDP 58 (366)
T ss_dssp CCTTHHHHHHHHHTSCHHHHHHHHHCGGGSCHHHHHHHHHHHHHTTC-----
T ss_pred CCCCCHHHHHHHhCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHhCCCCCCH
Confidence 3479999999999999999999998 4568999999999999988886 543
No 255
>3f1b_A TETR-like transcriptional regulator; APC5888, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.40A {Rhodococcus}
Probab=27.65 E-value=30 Score=32.62 Aligned_cols=30 Identities=27% Similarity=0.374 Sum_probs=22.6
Q ss_pred HHHHHhhC--ccccccchhhhccChhhhhhhc
Q 002388 225 LKKLIDRG--KVNVKDIASDIGISPDLLKTTL 254 (929)
Q Consensus 225 l~kli~~g--kv~v~d~~~~~gis~~~l~~~~ 254 (929)
++-+.++| +++|.|||.+.|||+-+|---.
T Consensus 24 ~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F 55 (203)
T 3f1b_A 24 VDVFSDRGFHETSMDAIAAKAEISKPMLYLYY 55 (203)
T ss_dssp HHHHHHHCTTTCCHHHHHHHTTSCHHHHHHHC
T ss_pred HHHHHHcCcccccHHHHHHHhCCchHHHHHHh
Confidence 34455667 7999999999999988775443
No 256
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=27.59 E-value=27 Score=31.57 Aligned_cols=32 Identities=19% Similarity=0.420 Sum_probs=27.3
Q ss_pred HHHHHHHHhhCccccccchhhh-ccChhhhhhhc
Q 002388 222 TLILKKLIDRGKVNVKDIASDI-GISPDLLKTTL 254 (929)
Q Consensus 222 ~~~l~kli~~gkv~v~d~~~~~-gis~~~l~~~~ 254 (929)
..||.-|-+ |..++.|||..+ |||+-+|...|
T Consensus 25 ~~IL~~L~~-~~~~~~eLa~~l~~is~~tvs~~L 57 (112)
T 1z7u_A 25 LSLMDELFQ-GTKRNGELMRALDGITQRVLTDRL 57 (112)
T ss_dssp HHHHHHHHH-SCBCHHHHHHHSTTCCHHHHHHHH
T ss_pred HHHHHHHHh-CCCCHHHHHHHhccCCHHHHHHHH
Confidence 457777764 999999999999 99999988776
No 257
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=27.52 E-value=26 Score=31.80 Aligned_cols=33 Identities=15% Similarity=0.238 Sum_probs=28.7
Q ss_pred HHHHHHHHhhCccccccchhhhccChhhhhhhc
Q 002388 222 TLILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (929)
Q Consensus 222 ~~~l~kli~~gkv~v~d~~~~~gis~~~l~~~~ 254 (929)
..||.-|-+.|.+++.|||..+|||+-++...|
T Consensus 34 ~~iL~~l~~~~~~~~~ela~~l~is~~~vs~~l 66 (142)
T 3bdd_A 34 YSILQTLLKDAPLHQLALQERLQIDRAAVTRHL 66 (142)
T ss_dssp HHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHH
Confidence 468888888999999999999999998886655
No 258
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=27.47 E-value=25 Score=31.08 Aligned_cols=32 Identities=25% Similarity=0.418 Sum_probs=26.1
Q ss_pred HHHHHHHHhhCccccccchhhhccChhhhhhhcc
Q 002388 222 TLILKKLIDRGKVNVKDIASDIGISPDLLKTTLA 255 (929)
Q Consensus 222 ~~~l~kli~~gkv~v~d~~~~~gis~~~l~~~~~ 255 (929)
..||+-+. +|+ +.++||.++|||+.++..-+.
T Consensus 35 ~~Vl~l~~-~G~-s~~eIA~~L~iS~~TV~~~~~ 66 (90)
T 3ulq_B 35 CLILQEVE-KGF-TNQEIADALHLSKRSIEYSLT 66 (90)
T ss_dssp HHHHHHHH-TTC-CHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHH-cCC-CHHHHHHHHCcCHHHHHHHHH
Confidence 45666555 785 899999999999999988774
No 259
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=27.44 E-value=13 Score=34.17 Aligned_cols=34 Identities=24% Similarity=0.528 Sum_probs=27.7
Q ss_pred EEEecccCcccccccccCcc--------CC-CCceeccccccc
Q 002388 721 ILICSGCKVAVHLDCYRNAK--------ES-TGPWYCELCEEL 754 (929)
Q Consensus 721 Ll~Cd~C~vaVHq~CYGi~~--------~p-~g~WlCd~C~~~ 754 (929)
||.|+.|.--+|-.|-|+.. .| ...|.|..|...
T Consensus 2 mi~c~~c~~w~H~~c~~~~~~~~~~l~~lp~~~~~~c~~C~~~ 44 (140)
T 2ku7_A 2 MMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTER 44 (140)
T ss_dssp CCCCSCCSSCHHHHHCCCCHHHHHHHHSSCTTTTCCSSCCTTT
T ss_pred ccccccCCCccCCcccccCHHHHHHHhhccccceeeCcccccc
Confidence 78999999999999998763 24 457999999754
No 260
>2row_A RHO-associated protein kinase 2; ATP-binding, coiled coil, cytoplasm, membrane, metal-binding, nucleotide-binding, phorbol-ester binding; NMR {Rattus norvegicus}
Probab=27.42 E-value=19 Score=32.09 Aligned_cols=33 Identities=27% Similarity=0.743 Sum_probs=26.0
Q ss_pred CCcCcccCCCCC-CCCC--EEEecccCccccccccc
Q 002388 705 PRSCDICRRSET-ILNP--ILICSGCKVAVHLDCYR 737 (929)
Q Consensus 705 d~~CsVC~~~E~-~~N~--Ll~Cd~C~vaVHq~CYG 737 (929)
..+|+.|...=- ...+ -+.|..|++.+|..|..
T Consensus 35 PT~Cd~C~~~lWGl~kqp~G~~C~~C~~~~HkrC~~ 70 (84)
T 2row_A 35 PTNCEACMKPLWHMFKPPPALECRRCHIKCHKDHMD 70 (84)
T ss_dssp CEECSSSSSEECCSSSCCCEEEESSSCCEEEHHHHH
T ss_pred CcchhhcCHhhhccccCCCCCEecCCCCccchhHhC
Confidence 477999976421 2344 89999999999999986
No 261
>3rd3_A Probable transcriptional regulator; 2.40A {Pseudomonas aeruginosa}
Probab=27.34 E-value=30 Score=32.43 Aligned_cols=30 Identities=13% Similarity=0.228 Sum_probs=20.9
Q ss_pred HHHHHHhhC--ccccccchhhhccChhhhhhh
Q 002388 224 ILKKLIDRG--KVNVKDIASDIGISPDLLKTT 253 (929)
Q Consensus 224 ~l~kli~~g--kv~v~d~~~~~gis~~~l~~~ 253 (929)
.++-+.++| ++++.|||.+.|||.-+|---
T Consensus 19 a~~lf~~~G~~~~t~~~IA~~agvs~~tlY~~ 50 (197)
T 3rd3_A 19 GYRIMAVKGFSGVGLNEILQSAGVPKGSFYHY 50 (197)
T ss_dssp HHHHHHHHCSTTCCHHHHHHHHTCCHHHHTTT
T ss_pred HHHHHHHCCcccCCHHHHHHHhCCChhhHHHH
Confidence 344455667 688888888888888776443
No 262
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=27.22 E-value=45 Score=32.60 Aligned_cols=54 Identities=19% Similarity=0.254 Sum_probs=41.0
Q ss_pred chHHHHHHHHHhhCccccccchhhhccChhhhhhhccc-c-ccccchhHHHHHHhh
Q 002388 219 LNFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLAD-G-TFASDLQCKLVKWLS 272 (929)
Q Consensus 219 ~~~~~~l~kli~~gkv~v~d~~~~~gis~~~l~~~~~~-~-~~~~~~~~k~~~wl~ 272 (929)
..|+..||+|..+-..+.+|+|..+|||..+|..-... . ..+.+.-.||.+-|.
T Consensus 9 ~~~g~~l~~~r~~~g~s~~~la~~~gis~~~ls~~e~g~~~~p~~~~l~~ia~~l~ 64 (198)
T 2bnm_A 9 TGFAELLKDRREQVKMDHAALASLLGETPETVAAWENGEGGELTLTQLGRIAHVLG 64 (198)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTTCTTCBHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCCHHHHHHHHHHhC
Confidence 45788999999999999999999999999988776652 2 344444556666554
No 263
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=27.07 E-value=54 Score=27.32 Aligned_cols=50 Identities=16% Similarity=0.328 Sum_probs=30.1
Q ss_pred CCCCcCcccCCCCCCCCCEEEecccCcccccccccCccCCCCceecccccccc
Q 002388 703 EHPRSCDICRRSETILNPILICSGCKVAVHLDCYRNAKESTGPWYCELCEELL 755 (929)
Q Consensus 703 e~d~~CsVC~~~E~~~N~Ll~Cd~C~vaVHq~CYGi~~~p~g~WlCd~C~~~~ 755 (929)
.....|.||++.-.....+ .--.|+-.||..|...-. .....|..|+...
T Consensus 13 ~~~~~C~IC~~~~~~~~~~-~~~~C~H~fc~~Ci~~~~--~~~~~CP~Cr~~~ 62 (78)
T 2ect_A 13 GSGLECPVCKEDYALGESV-RQLPCNHLFHDSCIVPWL--EQHDSCPVCRKSL 62 (78)
T ss_dssp SSSCCCTTTTSCCCTTSCE-EECTTSCEEETTTTHHHH--TTTCSCTTTCCCC
T ss_pred CCCCCCeeCCccccCCCCE-EEeCCCCeecHHHHHHHH--HcCCcCcCcCCcc
Confidence 3457899999854322332 223588888888864221 2235788887653
No 264
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=26.99 E-value=32 Score=30.55 Aligned_cols=34 Identities=15% Similarity=0.221 Sum_probs=25.3
Q ss_pred cchHHHHHHHHHhhCccccccchhhhccChhhhhh
Q 002388 218 ALNFTLILKKLIDRGKVNVKDIASDIGISPDLLKT 252 (929)
Q Consensus 218 s~~~~~~l~kli~~gkv~v~d~~~~~gis~~~l~~ 252 (929)
|.++-.-+-+|+.+| .++.+||..+|||+.++..
T Consensus 19 s~~~r~~i~~~~~~g-~s~~~ia~~lgis~~Tv~~ 52 (128)
T 1pdn_C 19 PNNIRLKIVEMAADG-IRPCVISRQLRVSHGCVSK 52 (128)
T ss_dssp CHHHHHHHHHHHHTT-CCHHHHHHHHTCCHHHHHH
T ss_pred CHHHHHHHHHHHHcC-CCHHHHHHHHCcCHHHHHH
Confidence 445555555677777 5999999999999877643
No 265
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=26.97 E-value=24 Score=29.86 Aligned_cols=35 Identities=20% Similarity=0.190 Sum_probs=29.7
Q ss_pred hHHHHHHHHHhh--Cccccccchhhh-----ccChhhhhhhc
Q 002388 220 NFTLILKKLIDR--GKVNVKDIASDI-----GISPDLLKTTL 254 (929)
Q Consensus 220 ~~~~~l~kli~~--gkv~v~d~~~~~-----gis~~~l~~~~ 254 (929)
-=..||+-|.+. |-+++.||+..+ |||..|+--+|
T Consensus 18 ~r~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L 59 (83)
T 2fu4_A 18 PRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVL 59 (83)
T ss_dssp HHHHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHH
Confidence 336788888876 689999999999 99999988777
No 266
>1u8b_A ADA polyprotein; protein-DNA complex, methylation, zinc, helix-turn-helix, metal binding protein/DNA complex; 2.10A {Escherichia coli} PDB: 1zgw_A* 1wpk_A* 1adn_A 1eyf_A
Probab=26.96 E-value=19 Score=33.48 Aligned_cols=31 Identities=19% Similarity=0.370 Sum_probs=26.2
Q ss_pred HHHHHh-hCccccccchhhhccChhhhhhhcc
Q 002388 225 LKKLID-RGKVNVKDIASDIGISPDLLKTTLA 255 (929)
Q Consensus 225 l~kli~-~gkv~v~d~~~~~gis~~~l~~~~~ 255 (929)
+..+|+ ....+|.+||.++|+|+-.|.....
T Consensus 84 a~~~i~~~~~~sl~~lA~~~g~S~~~f~r~Fk 115 (133)
T 1u8b_A 84 ACRLLEQETPVTLEALADQVAMSPFHLHRLFK 115 (133)
T ss_dssp HHHHTCSSSCCCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 456777 7889999999999999988887764
No 267
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=26.87 E-value=26 Score=32.54 Aligned_cols=33 Identities=21% Similarity=0.258 Sum_probs=28.4
Q ss_pred HHHHHHHHhhCccccccchhhh--ccChhhhhhhc
Q 002388 222 TLILKKLIDRGKVNVKDIASDI--GISPDLLKTTL 254 (929)
Q Consensus 222 ~~~l~kli~~gkv~v~d~~~~~--gis~~~l~~~~ 254 (929)
--||.-|-+.|..++++||..+ |||+-++..-|
T Consensus 16 ~~IL~~L~~~g~~s~~eLA~~l~~giS~~aVs~rL 50 (111)
T 3b73_A 16 DRILEIIHEEGNGSPKELEDRDEIRISKSSVSRRL 50 (111)
T ss_dssp HHHHHHHHHHSCBCHHHHHTSTTCCSCHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHhcCCCHHHHHHHH
Confidence 4578888888999999999999 99998887665
No 268
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=26.81 E-value=20 Score=31.94 Aligned_cols=34 Identities=18% Similarity=0.377 Sum_probs=23.4
Q ss_pred cchHHH-HHHHHHhhC------ccccccchhhhccChhhhh
Q 002388 218 ALNFTL-ILKKLIDRG------KVNVKDIASDIGISPDLLK 251 (929)
Q Consensus 218 s~~~~~-~l~kli~~g------kv~v~d~~~~~gis~~~l~ 251 (929)
|.+|-. +++.+.+.| -.++.+||.++|||+.+|.
T Consensus 8 s~e~K~~~v~~~~~~~~~~~s~g~s~~~va~~~gIs~~tl~ 48 (108)
T 2rn7_A 8 SPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLR 48 (108)
T ss_dssp CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSCHHHHH
T ss_pred CHHHHHHHHHHHHhcccccccccccHHHHHHHHCcCHHHHH
Confidence 445554 444444554 2799999999999988763
No 269
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=26.45 E-value=22 Score=32.13 Aligned_cols=33 Identities=21% Similarity=0.435 Sum_probs=28.3
Q ss_pred HHHHHHHHhhCccccccchhhhccChhhhhhhc
Q 002388 222 TLILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (929)
Q Consensus 222 ~~~l~kli~~gkv~v~d~~~~~gis~~~l~~~~ 254 (929)
..||.-|-+.|.++++|||..+|||+-++...|
T Consensus 36 ~~iL~~l~~~~~~~~~ela~~l~~~~~tvs~~l 68 (139)
T 3bja_A 36 FGVIQVLAKSGKVSMSKLIENMGCVPSNMTTMI 68 (139)
T ss_dssp HHHHHHHHHSCSEEHHHHHHHCSSCCTTHHHHH
T ss_pred HHHHHHHHHcCCcCHHHHHHHHCCChhHHHHHH
Confidence 568888888999999999999999988776554
No 270
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=26.44 E-value=16 Score=36.32 Aligned_cols=46 Identities=24% Similarity=0.675 Sum_probs=35.3
Q ss_pred CCCcCcccCCCCCCCCCEEEec--ccCcccccccccCc--------cCCCCceecccccc
Q 002388 704 HPRSCDICRRSETILNPILICS--GCKVAVHLDCYRNA--------KESTGPWYCELCEE 753 (929)
Q Consensus 704 ~d~~CsVC~~~E~~~N~Ll~Cd--~C~vaVHq~CYGi~--------~~p~g~WlCd~C~~ 753 (929)
.+.+|.+|.+ ++.++.|+ .|...|=..|.-.. ....++|.|=.|..
T Consensus 78 ~~~yC~wC~~----Gg~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P 133 (159)
T 3a1b_A 78 YQSYCTICCG----GREVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGH 133 (159)
T ss_dssp SBSSCTTTSC----CSEEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCS
T ss_pred CcceeeEecC----CCeEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecCC
Confidence 3578999998 68999999 79998888887321 13467899999864
No 271
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=26.40 E-value=28 Score=31.42 Aligned_cols=33 Identities=30% Similarity=0.531 Sum_probs=27.0
Q ss_pred HHHHHHHHhhCccccccchhhhccChhhhhhhcc
Q 002388 222 TLILKKLIDRGKVNVKDIASDIGISPDLLKTTLA 255 (929)
Q Consensus 222 ~~~l~kli~~gkv~v~d~~~~~gis~~~l~~~~~ 255 (929)
..||.-|.+ |..++.|||..+|||+-++...|.
T Consensus 35 ~~il~~L~~-~~~s~~ela~~l~is~stvsr~l~ 67 (119)
T 2lkp_A 35 LMILTQLRN-GPLPVTDLAEAIGMEQSAVSHQLR 67 (119)
T ss_dssp HHHHHHHHH-CCCCHHHHHHHHSSCHHHHHHHHH
T ss_pred HHHHHHHHH-CCCCHHHHHHHHCcCHHHHHHHHH
Confidence 346666666 889999999999999999877663
No 272
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=26.26 E-value=40 Score=37.18 Aligned_cols=36 Identities=22% Similarity=0.496 Sum_probs=29.5
Q ss_pred CCCCCcCcccCCCCC-CCCCEEEecccCccccccccc
Q 002388 702 KEHPRSCDICRRSET-ILNPILICSGCKVAVHLDCYR 737 (929)
Q Consensus 702 ke~d~~CsVC~~~E~-~~N~Ll~Cd~C~vaVHq~CYG 737 (929)
......|.+|...-. ...+-..|..|+..||..|..
T Consensus 354 ~~~~t~C~~C~~~~~g~~~qg~~C~~C~~~~h~~C~~ 390 (406)
T 2vrw_B 354 FEETTSCKACQMLLRGTFYQGYRCYRCRAPAHKECLG 390 (406)
T ss_dssp CSSCCBCTTTCCBCCSSSSCEEEETTTCCEECGGGGG
T ss_pred CCCCCCCccccchhceeCCCCCCCCCCcCccchhhhh
Confidence 345688999997542 457889999999999999986
No 273
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=26.13 E-value=55 Score=27.14 Aligned_cols=52 Identities=13% Similarity=0.125 Sum_probs=37.5
Q ss_pred HHHHHHHHhhCccccccchhhhccChhhhhhhccccc-cccchhHHHHHHhhhc
Q 002388 222 TLILKKLIDRGKVNVKDIASDIGISPDLLKTTLADGT-FASDLQCKLVKWLSNH 274 (929)
Q Consensus 222 ~~~l~kli~~gkv~v~d~~~~~gis~~~l~~~~~~~~-~~~~~~~k~~~wl~~~ 274 (929)
.--||.|-.+=..+-+++|..+|||+.++..--.... -++++ .+|++.|..+
T Consensus 13 g~~lr~~R~~~gltq~elA~~~gvs~~tis~~E~G~~~p~~~~-~~l~~~l~~~ 65 (73)
T 3fmy_A 13 PEFIVKVRKKLSLTQKEASEIFGGGVNAFSRYEKGNAXPHPST-IKLLRVLDKH 65 (73)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHCSCTTHHHHHHTTSSCCCHHH-HHHHHHHHHC
T ss_pred HHHHHHHHHHcCCCHHHHHHHhCcCHHHHHHHHcCCCCCCHHH-HHHHHHHCCC
Confidence 4457888888889999999999999988877665322 23333 3777777644
No 274
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=26.04 E-value=14 Score=39.06 Aligned_cols=51 Identities=18% Similarity=0.228 Sum_probs=0.0
Q ss_pred hCccccccchhhhccChhhhhhhcc-ccccccchhHHHHHHhhhcccccccc
Q 002388 231 RGKVNVKDIASDIGISPDLLKTTLA-DGTFASDLQCKLVKWLSNHAYLGGLL 281 (929)
Q Consensus 231 ~gkv~v~d~~~~~gis~~~l~~~~~-~~~~~~~~~~k~~~wl~~~~~~~~~~ 281 (929)
..+++++|||.+.|+|.-|+--+|+ ....++..+.||.+-.+..-|.+...
T Consensus 4 ~~~~ti~diA~~agVS~~TVSr~Ln~~~~vs~~tr~rV~~~a~~lgY~pn~~ 55 (333)
T 3jvd_A 4 SAKSSLKEVAELAGVGYATASRALSGKGYVSPQTREKVQAAAKELNYVPNQL 55 (333)
T ss_dssp ----------------------------------------------------
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHCCCcCHH
Confidence 4679999999999999999999998 56688889999998888887766543
No 275
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=25.95 E-value=28 Score=31.71 Aligned_cols=33 Identities=15% Similarity=0.217 Sum_probs=28.5
Q ss_pred HHHHHHHHhhCccccccchhhhccChhhhhhhc
Q 002388 222 TLILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (929)
Q Consensus 222 ~~~l~kli~~gkv~v~d~~~~~gis~~~l~~~~ 254 (929)
..||.-|-+.|.+++.|||..+|||+-++...|
T Consensus 36 ~~iL~~l~~~~~~~~~~la~~l~~s~~tvs~~l 68 (145)
T 2a61_A 36 FDILQKIYFEGPKRPGELSVLLGVAKSTVTGLV 68 (145)
T ss_dssp HHHHHHHHHHCCBCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCCCchhHHHHH
Confidence 567888888899999999999999998876655
No 276
>3lwj_A Putative TETR-family transcriptional regulator; structural G joint center for structural genomics, JCSG, protein structu initiative; 2.07A {Syntrophomonas wolfei subsp}
Probab=25.85 E-value=33 Score=32.44 Aligned_cols=9 Identities=22% Similarity=0.412 Sum_probs=3.8
Q ss_pred HHHHHHHcc
Q 002388 602 ELREAKKQG 610 (929)
Q Consensus 602 ~~rea~k~~ 610 (929)
-+.++.+.|
T Consensus 138 ~l~~~~~~g 146 (202)
T 3lwj_A 138 NIEYGIKKG 146 (202)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHcC
Confidence 333444444
No 277
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=25.79 E-value=30 Score=30.30 Aligned_cols=49 Identities=16% Similarity=0.279 Sum_probs=28.8
Q ss_pred CCCCcCcccCCCCCCCCCEEEecccCcccccccccCccCCCCceeccccccc
Q 002388 703 EHPRSCDICRRSETILNPILICSGCKVAVHLDCYRNAKESTGPWYCELCEEL 754 (929)
Q Consensus 703 e~d~~CsVC~~~E~~~N~Ll~Cd~C~vaVHq~CYGi~~~p~g~WlCd~C~~~ 754 (929)
+....|.||++.-..++ .+.--.|+-.||..|...-. ...-.|..|+..
T Consensus 38 ~~~~~C~IC~~~~~~~~-~~~~l~C~H~Fh~~Ci~~wl--~~~~~CP~Cr~~ 86 (91)
T 2l0b_A 38 GQEMCCPICCSEYVKGD-VATELPCHHYFHKPCVSIWL--QKSGTCPVCRCM 86 (91)
T ss_dssp SSCSEETTTTEECCTTC-EEEEETTTEEEEHHHHHHHH--TTTCBCTTTCCB
T ss_pred CCCCCCcccChhhcCCC-cEEecCCCChHHHHHHHHHH--HcCCcCcCcCcc
Confidence 45678999997432233 33334599999999964211 122357777543
No 278
>3dew_A Transcriptional regulator, TETR family; S genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 1.75A {Geobacter sulfurreducens}
Probab=25.72 E-value=33 Score=32.23 Aligned_cols=10 Identities=10% Similarity=0.258 Sum_probs=4.3
Q ss_pred HHHHHHHHcc
Q 002388 601 CELREAKKQG 610 (929)
Q Consensus 601 ~~~rea~k~~ 610 (929)
.-++++.+.|
T Consensus 133 ~~l~~~~~~g 142 (206)
T 3dew_A 133 ESIEAGMTRG 142 (206)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHhhcC
Confidence 3344444444
No 279
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=25.57 E-value=27 Score=31.65 Aligned_cols=33 Identities=15% Similarity=0.215 Sum_probs=28.6
Q ss_pred HHHHHHHHhhCccccccchhhhccChhhhhhhc
Q 002388 222 TLILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (929)
Q Consensus 222 ~~~l~kli~~gkv~v~d~~~~~gis~~~l~~~~ 254 (929)
..||.-|.+.|.+++.|||..+|||+-++...|
T Consensus 39 ~~iL~~l~~~~~~t~~ela~~l~~s~~~vs~~l 71 (142)
T 2fbi_A 39 WRVIRILRQQGEMESYQLANQACILRPSMTGVL 71 (142)
T ss_dssp HHHHHHHHHHCSEEHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCCCHhHHHHHH
Confidence 568888888999999999999999998876554
No 280
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=25.54 E-value=28 Score=31.82 Aligned_cols=33 Identities=15% Similarity=0.168 Sum_probs=28.9
Q ss_pred HHHHHHHHhhCccccccchhhhccChhhhhhhc
Q 002388 222 TLILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (929)
Q Consensus 222 ~~~l~kli~~gkv~v~d~~~~~gis~~~l~~~~ 254 (929)
..||.-|-+.|.+++.|||..+|||+-++...|
T Consensus 32 ~~iL~~l~~~~~~t~~~la~~l~~s~~~vs~~l 64 (144)
T 1lj9_A 32 YLYLVRVCENPGIIQEKIAELIKVDRTTAARAI 64 (144)
T ss_dssp HHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHCcCcCHHHHHHHHCCCHhHHHHHH
Confidence 568888888999999999999999998877655
No 281
>3b81_A Transcriptional regulator, ACRR family; NP_350189.1, predicted DNA-binding transcriptional regulator TETR/ACRR family; 2.10A {Clostridium acetobutylicum atcc 824}
Probab=25.54 E-value=34 Score=32.33 Aligned_cols=30 Identities=23% Similarity=0.320 Sum_probs=22.7
Q ss_pred HHHHHhhC--ccccccchhhhccChhhhhhhc
Q 002388 225 LKKLIDRG--KVNVKDIASDIGISPDLLKTTL 254 (929)
Q Consensus 225 l~kli~~g--kv~v~d~~~~~gis~~~l~~~~ 254 (929)
++-+.++| ++++.|||.+.|||.-+|-.-.
T Consensus 21 ~~lf~~~G~~~~s~~~Ia~~agvs~~t~Y~~F 52 (203)
T 3b81_A 21 WDIFIANGYENTTLAFIINKLGISKGALYHYF 52 (203)
T ss_dssp HHHHHHHCSTTCCHHHHHHHHTCCHHHHHTTC
T ss_pred HHHHHHcCcccCcHHHHHHHhCCCchhHHHHc
Confidence 34455677 7899999999999988775544
No 282
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=25.51 E-value=35 Score=32.08 Aligned_cols=37 Identities=16% Similarity=0.290 Sum_probs=31.7
Q ss_pred chHHHHHHHHHhhCcc-------ccccchhhhccChhhhhhhcc
Q 002388 219 LNFTLILKKLIDRGKV-------NVKDIASDIGISPDLLKTTLA 255 (929)
Q Consensus 219 ~~~~~~l~kli~~gkv-------~v~d~~~~~gis~~~l~~~~~ 255 (929)
..+.-.|+..|..|+. +..++|.++|||.-++..+|.
T Consensus 7 ~~i~~~i~~~I~~g~l~~G~~LPse~~La~~~gvSr~tVr~Al~ 50 (129)
T 2ek5_A 7 KQIASLIEDSIVDGTLSIDQRVPSTNELAAFHRINPATARNGLT 50 (129)
T ss_dssp HHHHHHHHHHHHTTSSCTTSCBCCHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHH
Confidence 3466778999999976 788999999999999999885
No 283
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=25.45 E-value=35 Score=31.10 Aligned_cols=38 Identities=13% Similarity=0.209 Sum_probs=32.7
Q ss_pred cchHHHHHHHHHhhCcc-------ccccchhhhccChhhhhhhcc
Q 002388 218 ALNFTLILKKLIDRGKV-------NVKDIASDIGISPDLLKTTLA 255 (929)
Q Consensus 218 s~~~~~~l~kli~~gkv-------~v~d~~~~~gis~~~l~~~~~ 255 (929)
...+.--|+..|..|.. ++.++|.++|||.-++..+|.
T Consensus 11 ~~~i~~~i~~~I~~g~~~~G~~lPs~~~La~~~~vSr~tvr~al~ 55 (113)
T 3tqn_A 11 YQQLRDKIVEAIIDGSYVEGEMIPSIRKISTEYQINPLTVSKAYQ 55 (113)
T ss_dssp HHHHHHHHHHHHHHTSSCTTCEECCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHH
Confidence 34577789999999887 678999999999999999985
No 284
>2o38_A Hypothetical protein; alpha-beta, helix-turn-helix, structural genomics, PSI-2, PR structure initiative; 1.83A {Rhodopseudomonas palustris} SCOP: a.35.1.13
Probab=25.45 E-value=53 Score=30.43 Aligned_cols=54 Identities=20% Similarity=0.287 Sum_probs=40.7
Q ss_pred chHHHHHHHHHhhCccccccchhhhccChhhhhhhccc-c-ccccchhHHHHHHhh
Q 002388 219 LNFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLAD-G-TFASDLQCKLVKWLS 272 (929)
Q Consensus 219 ~~~~~~l~kli~~gkv~v~d~~~~~gis~~~l~~~~~~-~-~~~~~~~~k~~~wl~ 272 (929)
..|...||+|..+-..+-.++|..+|||+.+|-.-... . .++.+.-.+|.+-|.
T Consensus 39 ~~lg~~L~~~R~~~glTQ~eLA~~lGis~~~Is~iE~G~~~~~s~~~l~~ia~~Lg 94 (120)
T 2o38_A 39 LRLAYALNAVIDRARLSQAAAAARLGINQPKVSALRNYKLEGFSVERLMTLLNALD 94 (120)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTCCTTCCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCCHHHHHHHHHHhC
Confidence 35677899999999999999999999999988776642 2 344455556666554
No 285
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=25.38 E-value=37 Score=28.06 Aligned_cols=44 Identities=20% Similarity=0.309 Sum_probs=30.8
Q ss_pred ccccccchhhhccChhhhhhhccccc---cccc-------hhHHHHHHhhhccc
Q 002388 233 KVNVKDIASDIGISPDLLKTTLADGT---FASD-------LQCKLVKWLSNHAY 276 (929)
Q Consensus 233 kv~v~d~~~~~gis~~~l~~~~~~~~---~~~~-------~~~k~~~wl~~~~~ 276 (929)
.++.+++|.-+|||+.||..-...+. ...+ ....|..||..+..
T Consensus 2 ~lt~~e~a~~LgvS~~Tl~rw~~~G~P~~~~~g~~~~~~y~~~dv~~wl~~~~~ 55 (68)
T 1j9i_A 2 EVNKKQLADIFGASIRTIQNWQEQGMPVLRGGGKGNEVLYDSAAVIKWYAERDA 55 (68)
T ss_dssp EEEHHHHHHHTTCCHHHHHHHTTTTCCCSSCCCSSSCCEEEHHHHHHHHTTTGG
T ss_pred ccCHHHHHHHHCcCHHHHHHHHHCCCCeEeeCCCcceEEECHHHHHHHHHHCcc
Confidence 36889999999999999987665432 1111 23678888887643
No 286
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=25.31 E-value=30 Score=31.86 Aligned_cols=33 Identities=18% Similarity=0.276 Sum_probs=29.3
Q ss_pred HHHHHHHHhhCccccccchhhhccChhhhhhhc
Q 002388 222 TLILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (929)
Q Consensus 222 ~~~l~kli~~gkv~v~d~~~~~gis~~~l~~~~ 254 (929)
..||.-|-+.|.++++|||..+||++-++...|
T Consensus 43 ~~iL~~l~~~~~~t~~ela~~l~~~~~tvs~~l 75 (148)
T 3nrv_A 43 WRIISVLSSASDCSVQKISDILGLDKAAVSRTV 75 (148)
T ss_dssp HHHHHHHHHSSSBCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHH
Confidence 568889999999999999999999998887655
No 287
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=25.16 E-value=36 Score=31.82 Aligned_cols=38 Identities=16% Similarity=0.234 Sum_probs=33.1
Q ss_pred cchHHHHHHHHHhhCcc-------ccccchhhhccChhhhhhhcc
Q 002388 218 ALNFTLILKKLIDRGKV-------NVKDIASDIGISPDLLKTTLA 255 (929)
Q Consensus 218 s~~~~~~l~kli~~gkv-------~v~d~~~~~gis~~~l~~~~~ 255 (929)
..-++-.|+..|..|.. ++.++|.++|+|.-++..+|.
T Consensus 13 ~~~i~~~l~~~I~~g~~~~G~~lPse~~La~~~~vSr~tvr~Al~ 57 (126)
T 3by6_A 13 YLQLVDRIKNEVATDVLSANDQLPSVRETALQEKINPNTVAKAYK 57 (126)
T ss_dssp HHHHHHHHHHHHHTTSSCTTCEECCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHH
Confidence 45577889999999875 899999999999999999885
No 288
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=25.01 E-value=28 Score=31.66 Aligned_cols=33 Identities=36% Similarity=0.538 Sum_probs=27.9
Q ss_pred HHHHHHHHhhCccc--cccchhhh-ccChhhhhhhcc
Q 002388 222 TLILKKLIDRGKVN--VKDIASDI-GISPDLLKTTLA 255 (929)
Q Consensus 222 ~~~l~kli~~gkv~--v~d~~~~~-gis~~~l~~~~~ 255 (929)
..||.-|- .|... +.|||..+ |||+-+|...|.
T Consensus 30 l~IL~~L~-~g~~~~~~~eL~~~l~gis~~~ls~~L~ 65 (111)
T 3df8_A 30 MLIISVLG-NGSTRQNFNDIRSSIPGISSTILSRRIK 65 (111)
T ss_dssp HHHHHHHT-SSSSCBCHHHHHHTSTTCCHHHHHHHHH
T ss_pred HHHHHHHh-cCCCCCCHHHHHHHccCCCHHHHHHHHH
Confidence 46788776 78877 99999999 999999987773
No 289
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=24.91 E-value=35 Score=32.49 Aligned_cols=31 Identities=19% Similarity=0.348 Sum_probs=22.6
Q ss_pred HHHHHHhhC--ccccccchhhhccChhhhhhhc
Q 002388 224 ILKKLIDRG--KVNVKDIASDIGISPDLLKTTL 254 (929)
Q Consensus 224 ~l~kli~~g--kv~v~d~~~~~gis~~~l~~~~ 254 (929)
.++-+.++| .|+|.|||.+.|||.-+|-.-.
T Consensus 40 a~~l~~~~G~~~~tv~~Ia~~agvs~~t~Y~~F 72 (218)
T 3dcf_A 40 ATELFREKGYYATSLDDIADRIGFTKPAIYYYF 72 (218)
T ss_dssp HHHHHHHTCTTTCCHHHHHHHHTCCHHHHHHHC
T ss_pred HHHHHHHcCcccCcHHHHHHHhCCCHHHHHHHc
Confidence 344455677 7899999999999988775443
No 290
>3col_A Putative transcription regulator; structural genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Lactobacillus plantarum WCFS1}
Probab=24.76 E-value=35 Score=31.81 Aligned_cols=28 Identities=18% Similarity=0.329 Sum_probs=19.2
Q ss_pred HHHHhhC--ccccccchhhhccChhhhhhh
Q 002388 226 KKLIDRG--KVNVKDIASDIGISPDLLKTT 253 (929)
Q Consensus 226 ~kli~~g--kv~v~d~~~~~gis~~~l~~~ 253 (929)
+-+.++| +++|.|||.+.|||.-+|-.-
T Consensus 21 ~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~ 50 (196)
T 3col_A 21 AIILAEGPAGVSTTKVAKRVGIAQSNVYLY 50 (196)
T ss_dssp HHHHHHCGGGCCHHHHHHHHTSCHHHHHTT
T ss_pred HHHHhcCcccCCHHHHHHHhCCcHHHHHHH
Confidence 3344566 688888888888887776543
No 291
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=24.68 E-value=28 Score=32.15 Aligned_cols=33 Identities=12% Similarity=0.180 Sum_probs=28.7
Q ss_pred HHHHHHHHhhCccccccchhhhccChhhhhhhc
Q 002388 222 TLILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (929)
Q Consensus 222 ~~~l~kli~~gkv~v~d~~~~~gis~~~l~~~~ 254 (929)
..||.-|-+.|.+++.|||..+||++-++...|
T Consensus 43 ~~iL~~l~~~~~~t~~ela~~l~~~~~~vs~~l 75 (152)
T 3bj6_A 43 RAILEGLSLTPGATAPQLGAALQMKRQYISRIL 75 (152)
T ss_dssp HHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHH
Confidence 568888888899999999999999998876655
No 292
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=24.60 E-value=31 Score=32.87 Aligned_cols=33 Identities=18% Similarity=0.462 Sum_probs=28.5
Q ss_pred HHHHHHHHhhCccccccchhhhccChhhhhhhcc
Q 002388 222 TLILKKLIDRGKVNVKDIASDIGISPDLLKTTLA 255 (929)
Q Consensus 222 ~~~l~kli~~gkv~v~d~~~~~gis~~~l~~~~~ 255 (929)
.+||+-|. .|..++.|||..+|||+-+|...|.
T Consensus 27 l~IL~~L~-~g~~~~~eLa~~lgis~~tls~~L~ 59 (146)
T 2f2e_A 27 MLIVRDAF-EGLTRFGEFQKSLGLAKNILAARLR 59 (146)
T ss_dssp HHHHHHHH-TTCCSHHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHHHHH-hCCCCHHHHHHHhCCCHHHHHHHHH
Confidence 46888886 6999999999999999999987763
No 293
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=24.59 E-value=27 Score=32.32 Aligned_cols=31 Identities=32% Similarity=0.479 Sum_probs=25.2
Q ss_pred HHHHHHHhhCccccccchhhhccChhhhhhhc
Q 002388 223 LILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (929)
Q Consensus 223 ~~l~kli~~gkv~v~d~~~~~gis~~~l~~~~ 254 (929)
.||+-|. +|..++.|||..+|||+-++...|
T Consensus 50 ~IL~~L~-~~~~s~~ela~~lgis~stvs~~L 80 (122)
T 1r1t_A 50 RLLSLLA-RSELCVGDLAQAIGVSESAVSHQL 80 (122)
T ss_dssp HHHHHHT-TCCBCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHH-cCCCCHHHHHHHHCcCHHHHHHHH
Confidence 3566665 588999999999999998887665
No 294
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=24.51 E-value=30 Score=34.25 Aligned_cols=34 Identities=15% Similarity=0.306 Sum_probs=27.9
Q ss_pred HHHHHHHHHhhCc-cccccchhhhccChhhhhhhc
Q 002388 221 FTLILKKLIDRGK-VNVKDIASDIGISPDLLKTTL 254 (929)
Q Consensus 221 ~~~~l~kli~~gk-v~v~d~~~~~gis~~~l~~~~ 254 (929)
..-||+-|.+.|. ++++|||.++|+|.-++..-|
T Consensus 23 ~~~Il~~L~~~~~~~s~~eLa~~l~vS~~Ti~rdi 57 (187)
T 1j5y_A 23 LKSIVRILERSKEPVSGAQLAEELSVSRQVIVQDI 57 (187)
T ss_dssp HHHHHHHHHHCSSCBCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHH
Confidence 3557777876554 999999999999999987766
No 295
>1pb6_A Hypothetical transcriptional regulator YCDC; helix-loop-helix, dimer, structural genomics, PSI, protein structure initiative; 2.50A {Escherichia coli} PDB: 3loc_A*
Probab=24.46 E-value=37 Score=32.31 Aligned_cols=26 Identities=23% Similarity=0.204 Sum_probs=18.0
Q ss_pred HHhhC--ccccccchhhhccChhhhhhh
Q 002388 228 LIDRG--KVNVKDIASDIGISPDLLKTT 253 (929)
Q Consensus 228 li~~g--kv~v~d~~~~~gis~~~l~~~ 253 (929)
+.++| ++++.|||.+.|||.-+|-.-
T Consensus 31 ~~~~G~~~~s~~~Ia~~agvs~~t~Y~~ 58 (212)
T 1pb6_A 31 FSQFGFHGTRLEQIAELAGVSKTNLLYY 58 (212)
T ss_dssp HHHHCTTTCCHHHHHHHTTSCHHHHHHH
T ss_pred HHHcCcchhhHHHHHHHHCCChhHHHHh
Confidence 44556 677888888888887766543
No 296
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=24.45 E-value=26 Score=32.07 Aligned_cols=32 Identities=16% Similarity=0.293 Sum_probs=28.5
Q ss_pred HHHHHHHHhhCccccccchhhhccChhhhhhhc
Q 002388 222 TLILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (929)
Q Consensus 222 ~~~l~kli~~gkv~v~d~~~~~gis~~~l~~~~ 254 (929)
..||.-|-+.| ++++|||..+|||+-++...|
T Consensus 41 ~~iL~~l~~~~-~t~~eLa~~l~~s~~tvs~~l 72 (146)
T 3tgn_A 41 EHILMLLSEES-LTNSELARRLNVSQAAVTKAI 72 (146)
T ss_dssp HHHHHHHTTCC-CCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHhCC-CCHHHHHHHHCCCHHHHHHHH
Confidence 67888888888 999999999999999887666
No 297
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=24.44 E-value=37 Score=31.30 Aligned_cols=30 Identities=20% Similarity=0.325 Sum_probs=24.1
Q ss_pred HHHHHHHhhCccccccchhhhccChhhhhhhc
Q 002388 223 LILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (929)
Q Consensus 223 ~~l~kli~~gkv~v~d~~~~~gis~~~l~~~~ 254 (929)
.|+. +.-.|. +.++||..+|||+.++...+
T Consensus 116 ~v~~-~~~~g~-s~~EIA~~lgis~~tV~~~~ 145 (164)
T 3mzy_A 116 EVLT-YLIRGY-SYREIATILSKNLKSIDNTI 145 (164)
T ss_dssp HHHH-HHTTTC-CHHHHHHHHTCCHHHHHHHH
T ss_pred HHHH-HHHcCC-CHHHHHHHHCCCHHHHHHHH
Confidence 3455 444554 99999999999999999887
No 298
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=24.34 E-value=27 Score=32.39 Aligned_cols=32 Identities=16% Similarity=0.290 Sum_probs=27.7
Q ss_pred HHHHHHHHhhCccccccchhhhccChhhhhhhc
Q 002388 222 TLILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (929)
Q Consensus 222 ~~~l~kli~~gkv~v~d~~~~~gis~~~l~~~~ 254 (929)
..||.-| +.|.++++|||..+|+++-++...|
T Consensus 41 ~~iL~~l-~~~~~t~~eLa~~l~~~~~~vs~~l 72 (151)
T 3kp7_A 41 SHVLNML-SIEALTVGQITEKQGVNKAAVSRRV 72 (151)
T ss_dssp HHHHHHH-HHSCBCHHHHHHHHCSCSSHHHHHH
T ss_pred HHHHHHH-HcCCcCHHHHHHHHCCCHHHHHHHH
Confidence 5688888 9999999999999999998776554
No 299
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=24.22 E-value=48 Score=26.64 Aligned_cols=22 Identities=14% Similarity=0.229 Sum_probs=20.0
Q ss_pred ccccccchhhhccChhhhhhhc
Q 002388 233 KVNVKDIASDIGISPDLLKTTL 254 (929)
Q Consensus 233 kv~v~d~~~~~gis~~~l~~~~ 254 (929)
..+.++||..+|||+.++...+
T Consensus 31 g~s~~eIA~~lgis~~tv~~~~ 52 (70)
T 2o8x_A 31 GLSYADAAAVCGCPVGTIRSRV 52 (70)
T ss_dssp CCCHHHHHHHHTSCHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHH
Confidence 3799999999999999998877
No 300
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A
Probab=24.19 E-value=45 Score=38.92 Aligned_cols=36 Identities=22% Similarity=0.544 Sum_probs=29.2
Q ss_pred CCCCcCcccCCCC-CCCCCEEEecccCcccccccccC
Q 002388 703 EHPRSCDICRRSE-TILNPILICSGCKVAVHLDCYRN 738 (929)
Q Consensus 703 e~d~~CsVC~~~E-~~~N~Ll~Cd~C~vaVHq~CYGi 738 (929)
.....|++|...= ....+-+.|..|++.||..|.+.
T Consensus 527 ~~~t~C~~C~~~l~gl~~qg~~C~~C~~~vHk~C~~~ 563 (587)
T 3ky9_A 527 EETTSCKACQMLLRGTFYQGYRCHRCRASAHKECLGR 563 (587)
T ss_dssp SSCCBCTTTCSBCCSSSCCEEEETTTCCEECSGGGGG
T ss_pred CCCcccccccccccccccCCcCCCCCCCccchhhhhc
Confidence 4568899998753 23568899999999999999874
No 301
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=24.03 E-value=28 Score=32.28 Aligned_cols=33 Identities=21% Similarity=0.434 Sum_probs=28.7
Q ss_pred HHHHHHHHhhCccccccchhhhccChhhhhhhc
Q 002388 222 TLILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (929)
Q Consensus 222 ~~~l~kli~~gkv~v~d~~~~~gis~~~l~~~~ 254 (929)
..||.-|.+.|.+++.|||..+|||+-++...|
T Consensus 40 ~~iL~~l~~~~~~t~~ela~~l~~s~~tvs~~l 72 (155)
T 1s3j_A 40 LFVLASLKKHGSLKVSEIAERMEVKPSAVTLMA 72 (155)
T ss_dssp HHHHHHHHHHSEEEHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHH
Confidence 567888888899999999999999998887665
No 302
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=23.84 E-value=18 Score=33.18 Aligned_cols=16 Identities=25% Similarity=0.887 Sum_probs=14.7
Q ss_pred eeecCCcCcccccchhhh
Q 002388 840 CIKCNYGNCQTTFHPTCA 857 (929)
Q Consensus 840 cIqC~~~~C~~~FH~~CA 857 (929)
+|+|. .|..|||..|-
T Consensus 2 mi~c~--~c~~w~H~~c~ 17 (140)
T 2ku7_A 2 MMQCG--KCDRWVHSKCE 17 (140)
T ss_dssp CCCCS--CCSSCHHHHHC
T ss_pred ccccc--cCCCccCCccc
Confidence 78999 89999999994
No 303
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=23.75 E-value=39 Score=31.37 Aligned_cols=39 Identities=13% Similarity=0.264 Sum_probs=33.5
Q ss_pred CcchHHHHHHHHHhhCcc-------ccccchhhhccChhhhhhhcc
Q 002388 217 DALNFTLILKKLIDRGKV-------NVKDIASDIGISPDLLKTTLA 255 (929)
Q Consensus 217 ~s~~~~~~l~kli~~gkv-------~v~d~~~~~gis~~~l~~~~~ 255 (929)
-...+.-.|+..|..|.. ++.++|.++|||.-++..+|.
T Consensus 14 ~~~~i~~~i~~~I~~g~~~~g~~Lps~~~La~~~~vSr~tvr~Al~ 59 (125)
T 3neu_A 14 IYSQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQ 59 (125)
T ss_dssp HHHHHHHHHHHHHHTTSSCTTCBCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 345677889999999877 688999999999999999985
No 304
>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3
Probab=23.58 E-value=39 Score=30.15 Aligned_cols=60 Identities=15% Similarity=0.181 Sum_probs=39.2
Q ss_pred cHhhHhhcccCceeeccCccccccccccCchhhcccccccccccc-cCceeeCCCCCCCcccchhhhhh
Q 002388 21 FAHLFCSLLMPEVYIEDTMKVEPLMNVGGIKETRMKLVCNICRVK-CGACVRCSHGTCRTSFHPICARE 88 (929)
Q Consensus 21 WvHv~CALw~PEv~f~~~~~~epV~~V~~I~~~R~~LkC~iC~~k-~GAcIqCs~~~C~~~FHvtCA~~ 88 (929)
-.|-.||-+-+++.-..-. .-++. +... ....|.+|+.. .|....|. .|.-.+|+.||..
T Consensus 18 ~lhe~Ca~lP~~i~Hp~Hp-~H~L~-L~~~----~~~~C~~C~~~~~~~~Y~C~--~C~f~lH~~Ca~~ 78 (89)
T 1v5n_A 18 KYDEIAKDWPKKVKHVLHE-EHELE-LTRV----QVYTCDKCEEEGTIWSYHCD--ECDFDLHAKCALN 78 (89)
T ss_dssp HHHHHTSSSCSEECCSTTT-TSCEE-EECC----SSCCCTTTSCCCCSCEEECT--TTCCCCCHHHHHC
T ss_pred HHhHHHHcCCceecCCCCC-CCccE-EeeC----CCeEeCCCCCcCCCcEEEcC--CCCCeEcHHhcCC
Confidence 4899999876666532110 11111 1111 13689999976 56678998 7999999999965
No 305
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=23.57 E-value=29 Score=31.80 Aligned_cols=33 Identities=15% Similarity=0.328 Sum_probs=26.4
Q ss_pred HHHHHHHHhhCccccccchhhhccChhhhhhhc
Q 002388 222 TLILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (929)
Q Consensus 222 ~~~l~kli~~gkv~v~d~~~~~gis~~~l~~~~ 254 (929)
..||.-|-+.|.++++|||..+||++-++...|
T Consensus 40 ~~vL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l 72 (142)
T 3ech_A 40 VHVLKLIDEQRGLNLQDLGRQMCRDKALITRKI 72 (142)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHC---CHHHHHH
T ss_pred HHHHHHHHhCCCcCHHHHHHHhCCCHHHHHHHH
Confidence 678888889999999999999999998887665
No 306
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=23.57 E-value=42 Score=29.12 Aligned_cols=33 Identities=15% Similarity=0.216 Sum_probs=26.9
Q ss_pred HHHHHHHHhhC-ccccccchhhhccChhh-hhhhc
Q 002388 222 TLILKKLIDRG-KVNVKDIASDIGISPDL-LKTTL 254 (929)
Q Consensus 222 ~~~l~kli~~g-kv~v~d~~~~~gis~~~-l~~~~ 254 (929)
..+|.-|-..| .++++|||..+||++-+ +...|
T Consensus 18 l~~L~~l~~~~~~~t~~eLa~~l~is~~t~vs~~l 52 (95)
T 2pg4_A 18 LPTLLEFEKKGYEPSLAEIVKASGVSEKTFFMGLK 52 (95)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHCCCHHHHHTTHH
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHCCCchHHHHHHH
Confidence 45666667788 89999999999999998 76655
No 307
>2iu5_A DHAS, YCEG, HTH-type dhaklm operon transcriptional activator; synthase, TETR family; 1.6A {Lactococcus lactis subsp} SCOP: a.4.1.9 a.121.1.1
Probab=23.56 E-value=39 Score=32.10 Aligned_cols=27 Identities=15% Similarity=0.255 Sum_probs=19.6
Q ss_pred HHhhC--ccccccchhhhccChhhhhhhc
Q 002388 228 LIDRG--KVNVKDIASDIGISPDLLKTTL 254 (929)
Q Consensus 228 li~~g--kv~v~d~~~~~gis~~~l~~~~ 254 (929)
+.++| +++|.|||.+.|||.-+|-.-.
T Consensus 26 f~~~G~~~~tv~~Ia~~agvs~~t~Y~~F 54 (195)
T 2iu5_A 26 MQSNAYHQISVSDIMQTAKIRRQTFYNYF 54 (195)
T ss_dssp HHHSCGGGCCHHHHHHHHTSCGGGGGGTC
T ss_pred HHhCCCCeeCHHHHHHHhCCCHHHHHHHc
Confidence 33566 7888888888888887765443
No 308
>3kxa_A NGO0477 protein, putative uncharacterized protein; NEW protein fold, OPPF, STRU genomics, oxford protein production facility; 2.80A {Neisseria gonorrhoeae}
Probab=23.49 E-value=47 Score=31.59 Aligned_cols=49 Identities=14% Similarity=0.159 Sum_probs=37.7
Q ss_pred HHHHHHhhCccccccchhhhccChhhhhhhcc-ccccccchhHHHHHHhh
Q 002388 224 ILKKLIDRGKVNVKDIASDIGISPDLLKTTLA-DGTFASDLQCKLVKWLS 272 (929)
Q Consensus 224 ~l~kli~~gkv~v~d~~~~~gis~~~l~~~~~-~~~~~~~~~~k~~~wl~ 272 (929)
.|++|..+-..+.+++|..+|||+.+|..-.. ....+.+.-.+|.+.|.
T Consensus 72 ~L~~~R~~~glTq~elA~~lGis~s~is~~E~G~~~ps~~~l~~la~~lg 121 (141)
T 3kxa_A 72 TFVSLRMKKGFTQSELATAAGLPQPYLSRIENSKQSLQDKTVQKLANALG 121 (141)
T ss_dssp CHHHHHHHTTCCHHHHHHHTTCCHHHHHHHHHTCSCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHC
Confidence 36777778889999999999999999887776 34555566667777664
No 309
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=23.45 E-value=27 Score=31.89 Aligned_cols=33 Identities=27% Similarity=0.465 Sum_probs=27.9
Q ss_pred HHHHHHHHhhCccccccchhhhccChhhhhhhc
Q 002388 222 TLILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (929)
Q Consensus 222 ~~~l~kli~~gkv~v~d~~~~~gis~~~l~~~~ 254 (929)
..||.-|-..|.++++|||..+|||+-++...|
T Consensus 40 ~~iL~~l~~~~~~~~~ela~~l~~~~~tvs~~l 72 (142)
T 2bv6_A 40 FLVLTILWDESPVNVKKVVTELALDTGTVSPLL 72 (142)
T ss_dssp HHHHHHHHHSSEEEHHHHHHHTTCCTTTHHHHH
T ss_pred HHHHHHHHHcCCcCHHHHHHHHCCChhhHHHHH
Confidence 567888888899999999999999988776544
No 310
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=23.33 E-value=37 Score=36.67 Aligned_cols=34 Identities=9% Similarity=0.152 Sum_probs=29.5
Q ss_pred HHHHHHHHHhhCccccccchhhhccChhhhhhhc
Q 002388 221 FTLILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (929)
Q Consensus 221 ~~~~l~kli~~gkv~v~d~~~~~gis~~~l~~~~ 254 (929)
...||+.|-+.+.++++++|.++|||..++..-|
T Consensus 7 ~~~Il~~L~~~~~~s~~eLa~~l~vS~~ti~r~l 40 (321)
T 1bia_A 7 PLKLIALLANGEFHSGEQLGETLGMSRAAINKHI 40 (321)
T ss_dssp HHHHHHHHTTSSCBCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHcCCCcCHHHHHHHHCCCHHHHHHHH
Confidence 3568888888889999999999999999987766
No 311
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=23.29 E-value=17 Score=38.29 Aligned_cols=49 Identities=20% Similarity=0.264 Sum_probs=0.0
Q ss_pred CccccccchhhhccChhhhhhhcc-ccccccchhHHHHHHhhhccccccc
Q 002388 232 GKVNVKDIASDIGISPDLLKTTLA-DGTFASDLQCKLVKWLSNHAYLGGL 280 (929)
Q Consensus 232 gkv~v~d~~~~~gis~~~l~~~~~-~~~~~~~~~~k~~~wl~~~~~~~~~ 280 (929)
.+|+++|||.+.|+|.-|+--+|+ ....++....||.+-.+..-|.+..
T Consensus 3 ~~~ti~diA~~agVS~~TVSr~Ln~~~~vs~~tr~rV~~~~~~lgY~pn~ 52 (339)
T 3h5o_A 3 LGVTMHDVAKAAGVSAITVSRVLNQPQQVSEQLREKVMQAVDALAYVPSR 52 (339)
T ss_dssp --------------------------------------------------
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhCCCcCH
Confidence 479999999999999999999998 4667888899998888877776654
No 312
>3ppb_A Putative TETR family transcription regulator; DNA-binding, helix-turn-helix motif, HTH motif, DNA/RNA-BIND helical bundle fold; HET: MSE PG4; 2.10A {Shewanella loihica}
Probab=23.17 E-value=40 Score=31.34 Aligned_cols=27 Identities=19% Similarity=0.409 Sum_probs=18.2
Q ss_pred HHhhC--ccccccchhhhccChhhhhhhc
Q 002388 228 LIDRG--KVNVKDIASDIGISPDLLKTTL 254 (929)
Q Consensus 228 li~~g--kv~v~d~~~~~gis~~~l~~~~ 254 (929)
+.++| .++|.|||.+.|||+-+|-.-.
T Consensus 22 ~~~~G~~~~tv~~Ia~~agvs~~t~Y~~F 50 (195)
T 3ppb_A 22 FVSQGFHGTSTATIAREAGVATGTLFHHF 50 (195)
T ss_dssp HHHTCSTTSCHHHHHHHHTCCHHHHHHHC
T ss_pred HHhcCcccCCHHHHHHHhCCChhHHHHHc
Confidence 34455 6788888888888877765443
No 313
>1sgm_A Putative HTH-type transcriptional regulator YXAF; structural genomics, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=23.14 E-value=35 Score=31.73 Aligned_cols=28 Identities=14% Similarity=0.149 Sum_probs=17.7
Q ss_pred HHHHhhC--ccccccchhhhccChhhhhhh
Q 002388 226 KKLIDRG--KVNVKDIASDIGISPDLLKTT 253 (929)
Q Consensus 226 ~kli~~g--kv~v~d~~~~~gis~~~l~~~ 253 (929)
+-+.++| ++++.|||.+.|||.-+|-.-
T Consensus 17 ~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~ 46 (191)
T 1sgm_A 17 RLSQLQGYHATGLNQIVKESGAPKGSLYHF 46 (191)
T ss_dssp HHHHHHCTTTCCHHHHHHHHCCCSCHHHHS
T ss_pred HHHHHcCccccCHHHHHHHHCCCchhHHHH
Confidence 3344556 677777777777777665443
No 314
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=23.12 E-value=17 Score=38.13 Aligned_cols=49 Identities=12% Similarity=0.213 Sum_probs=0.0
Q ss_pred CccccccchhhhccChhhhhhhcc-ccccccchhHHHHHHhhhccccccc
Q 002388 232 GKVNVKDIASDIGISPDLLKTTLA-DGTFASDLQCKLVKWLSNHAYLGGL 280 (929)
Q Consensus 232 gkv~v~d~~~~~gis~~~l~~~~~-~~~~~~~~~~k~~~wl~~~~~~~~~ 280 (929)
+|++++|||.+.|+|.-|+--+|+ ....++....||.+-.+..-|.+..
T Consensus 4 ~~~ti~diA~~agVS~~TVSrvln~~~~vs~~tr~rV~~~a~~lgY~pn~ 53 (332)
T 2o20_A 4 STTTIYDVARVAGVSMATVSRVVNGNANVKEKTRQKVLEAIAELDYRPNA 53 (332)
T ss_dssp --------------------------------------------------
T ss_pred CCCcHHHHHHHHCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHCCCcCH
Confidence 579999999999999999999998 3467888888888877777776544
No 315
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=23.10 E-value=31 Score=31.97 Aligned_cols=34 Identities=18% Similarity=0.246 Sum_probs=29.2
Q ss_pred HHHHHHHHHhhCccccccchhhhccChhhhhhhc
Q 002388 221 FTLILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (929)
Q Consensus 221 ~~~~l~kli~~gkv~v~d~~~~~gis~~~l~~~~ 254 (929)
=..||.-|-+.|.++++|||..+|||+-++...|
T Consensus 49 ~~~iL~~l~~~~~~t~~ela~~l~~s~~tvs~~l 82 (153)
T 2pex_A 49 QYLVMLVLWETDERSVSEIGERLYLDSATLTPLL 82 (153)
T ss_dssp HHHHHHHHHHSCSEEHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHhCCCcCHHHHHHHhCCCcccHHHHH
Confidence 3568888888999999999999999998887655
No 316
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=23.09 E-value=34 Score=32.00 Aligned_cols=33 Identities=3% Similarity=0.027 Sum_probs=28.4
Q ss_pred HHHHHHHHhhCccccccchhhhccChhhhhhhc
Q 002388 222 TLILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (929)
Q Consensus 222 ~~~l~kli~~gkv~v~d~~~~~gis~~~l~~~~ 254 (929)
..||.-|.+.|.++++|||..+||++-++...|
T Consensus 52 ~~iL~~l~~~~~~t~~ela~~l~is~~tvs~~l 84 (162)
T 2fa5_A 52 WRVITILALYPGSSASEVSDRTAMDKVAVSRAV 84 (162)
T ss_dssp HHHHHHHHHSTTCCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHH
Confidence 567888888999999999999999998876655
No 317
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=23.06 E-value=35 Score=31.80 Aligned_cols=33 Identities=12% Similarity=0.097 Sum_probs=28.5
Q ss_pred HHHHHHHHhhCccccccchhhhccChhhhhhhc
Q 002388 222 TLILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (929)
Q Consensus 222 ~~~l~kli~~gkv~v~d~~~~~gis~~~l~~~~ 254 (929)
..||.-|.+.|.+++.|||..+||++-++...|
T Consensus 47 ~~iL~~l~~~~~~t~~ela~~l~is~~tvs~~l 79 (154)
T 2eth_A 47 LYAFLYVALFGPKKMKEIAEFLSTTKSNVTNVV 79 (154)
T ss_dssp HHHHHHHHHHCCBCHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHH
Confidence 568888889999999999999999998776554
No 318
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=23.05 E-value=52 Score=29.96 Aligned_cols=36 Identities=14% Similarity=0.106 Sum_probs=27.0
Q ss_pred cchHHHHHHHHHhhCccccccchhhhccChhhhhhhc
Q 002388 218 ALNFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (929)
Q Consensus 218 s~~~~~~l~kli~~gkv~v~d~~~~~gis~~~l~~~~ 254 (929)
|.++-..+..|.++| .++.+||..+|||..++...+
T Consensus 8 s~~~r~~i~~~~~~G-~s~~~ia~~lgis~~Tv~r~~ 43 (141)
T 1u78_A 8 SDTERAQLDVMKLLN-VSLHEMSRKISRSRHCIRVYL 43 (141)
T ss_dssp CHHHHHHHHHHHHTT-CCHHHHHHHHTCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHcC-CCHHHHHHHHCcCHHHHHHHH
Confidence 345555555677888 599999999999998875544
No 319
>1zk8_A Transcriptional regulator, TETR family; TETR member,transcriptional regulator, STRU genomics, PSI, protein structure initiative; 2.15A {Bacillus cereus atcc 14579} SCOP: a.4.1.9 a.121.1.1
Probab=22.88 E-value=40 Score=31.44 Aligned_cols=25 Identities=20% Similarity=0.352 Sum_probs=16.2
Q ss_pred HHhhC--ccccccchhhhccChhhhhh
Q 002388 228 LIDRG--KVNVKDIASDIGISPDLLKT 252 (929)
Q Consensus 228 li~~g--kv~v~d~~~~~gis~~~l~~ 252 (929)
+.++| +++|.|||.+.|||.-+|-.
T Consensus 21 ~~~~G~~~~t~~~Ia~~agvs~~t~Y~ 47 (183)
T 1zk8_A 21 ADANGVQEVTLASLAQTLGVRSPSLYN 47 (183)
T ss_dssp HHHHCGGGCCHHHHHHHHTSCHHHHTT
T ss_pred HHhcCccccCHHHHHHHcCCCchHHHH
Confidence 33455 67777777777777766543
No 320
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=22.86 E-value=40 Score=30.46 Aligned_cols=33 Identities=9% Similarity=0.078 Sum_probs=28.7
Q ss_pred HHHHHHHHhhCccccccchhhhccChhhhhhhc
Q 002388 222 TLILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (929)
Q Consensus 222 ~~~l~kli~~gkv~v~d~~~~~gis~~~l~~~~ 254 (929)
..||.-|-+.|.+++++||..+||++-++...|
T Consensus 37 ~~iL~~l~~~~~~~~~~la~~l~~~~~tvs~~l 69 (138)
T 1jgs_A 37 FKVLCSIRCAACITPVELKKVLSVDLGALTRML 69 (138)
T ss_dssp HHHHHHHHHHSSBCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHCCChHHHHHHH
Confidence 567888888899999999999999998886655
No 321
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=22.68 E-value=18 Score=38.51 Aligned_cols=50 Identities=22% Similarity=0.297 Sum_probs=0.0
Q ss_pred hCccccccchhhhccChhhhhhhccc-cccccchhHHHHHHhhhccccccc
Q 002388 231 RGKVNVKDIASDIGISPDLLKTTLAD-GTFASDLQCKLVKWLSNHAYLGGL 280 (929)
Q Consensus 231 ~gkv~v~d~~~~~gis~~~l~~~~~~-~~~~~~~~~k~~~wl~~~~~~~~~ 280 (929)
.++++++|||.+.|+|.-|+--+|+. ...++....||.+-.+..-|.+..
T Consensus 6 ~~~~ti~dvA~~aGVS~~TVSrvLn~~~~Vs~~tr~rV~~aa~~lgY~pn~ 56 (348)
T 3bil_A 6 KFRPTLKDVARQAGVSIATASRALADNPAVAASTRERIQQLASDLGYRANA 56 (348)
T ss_dssp ---------------------------------------------------
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHhCCCcCH
Confidence 35689999999999999999999983 467888888888877777776544
No 322
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=22.58 E-value=34 Score=36.01 Aligned_cols=48 Identities=13% Similarity=0.185 Sum_probs=42.0
Q ss_pred cccccchhhhccChhhhhhhcc-ccccccchhHHHHHHhhhcccccccc
Q 002388 234 VNVKDIASDIGISPDLLKTTLA-DGTFASDLQCKLVKWLSNHAYLGGLL 281 (929)
Q Consensus 234 v~v~d~~~~~gis~~~l~~~~~-~~~~~~~~~~k~~~wl~~~~~~~~~~ 281 (929)
++++|||.+.|+|.-|+--+|+ ....++..+.||.+-.+..=|.+...
T Consensus 1 ~ti~diA~~agVS~~TVSrvLn~~~~vs~~tr~rV~~~a~~lgY~pn~~ 49 (340)
T 1qpz_A 1 ATIKDVAKRANVSTTTVSHVINKTRFVAEETRNAVWAAIKELHYSPSAV 49 (340)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHTCSCCCHHHHHHHHHHHHHHTCCCCHH
T ss_pred CCHHHHHHHHCCCHHHHHHHHcCcCCCCHHHHHHHHHHHHHhCCCCCHH
Confidence 5789999999999999999999 45689999999999999888876543
No 323
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=22.51 E-value=33 Score=32.74 Aligned_cols=33 Identities=21% Similarity=0.359 Sum_probs=28.7
Q ss_pred HHHHHHHHhhCccccccchhhhccChhhhhhhc
Q 002388 222 TLILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (929)
Q Consensus 222 ~~~l~kli~~gkv~v~d~~~~~gis~~~l~~~~ 254 (929)
..||.-|-+.|.++++|||..+||++-++...|
T Consensus 48 ~~iL~~L~~~~~~t~~eLa~~l~is~~tvs~~l 80 (168)
T 2nyx_A 48 FRTLVILSNHGPINLATLATLLGVQPSATGRMV 80 (168)
T ss_dssp HHHHHHHHHHCSEEHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHhCCCHHHHHHHH
Confidence 567888888899999999999999998887655
No 324
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=22.26 E-value=33 Score=30.71 Aligned_cols=32 Identities=28% Similarity=0.423 Sum_probs=27.3
Q ss_pred HHHHHHHHhhCccccccchhhh-ccChhhhhhhc
Q 002388 222 TLILKKLIDRGKVNVKDIASDI-GISPDLLKTTL 254 (929)
Q Consensus 222 ~~~l~kli~~gkv~v~d~~~~~-gis~~~l~~~~ 254 (929)
..||.-|. .|..++.|||..+ |||+-+|...|
T Consensus 28 ~~IL~~L~-~~~~~~~eL~~~l~gis~~~ls~~L 60 (107)
T 2fsw_A 28 LLIIFQIN-RRIIRYGELKRAIPGISEKMLIDEL 60 (107)
T ss_dssp HHHHHHHT-TSCEEHHHHHHHSTTCCHHHHHHHH
T ss_pred HHHHHHHH-hCCcCHHHHHHHcccCCHHHHHHHH
Confidence 45777776 7999999999999 59999988776
No 325
>3e7q_A Transcriptional regulator; structural genomics, PSI, MCSG, P structure initiative, midwest center for structural genomic binding; 2.20A {Pseudomonas aeruginosa}
Probab=22.25 E-value=32 Score=32.60 Aligned_cols=19 Identities=26% Similarity=0.559 Sum_probs=10.8
Q ss_pred ccccccchhhhccChhhhh
Q 002388 233 KVNVKDIASDIGISPDLLK 251 (929)
Q Consensus 233 kv~v~d~~~~~gis~~~l~ 251 (929)
.+++.|||.+.|||.-+|-
T Consensus 34 ~~t~~~Ia~~agvs~~t~Y 52 (215)
T 3e7q_A 34 GASVRKICAEAGVSVGLIN 52 (215)
T ss_dssp HCCHHHHHHHHTCCHHHHH
T ss_pred cCCHHHHHHHhCCCHHHHH
Confidence 5555666666666555543
No 326
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=22.22 E-value=38 Score=30.97 Aligned_cols=33 Identities=18% Similarity=0.256 Sum_probs=28.6
Q ss_pred HHHHHHHHh-hCccccccchhhhccChhhhhhhc
Q 002388 222 TLILKKLID-RGKVNVKDIASDIGISPDLLKTTL 254 (929)
Q Consensus 222 ~~~l~kli~-~gkv~v~d~~~~~gis~~~l~~~~ 254 (929)
..||.-|-. .|.+++++||..+||++-++...|
T Consensus 38 ~~iL~~l~~~~~~~~~~~la~~l~i~~~~vs~~l 71 (147)
T 2hr3_A 38 LVVLGAIDRLGGDVTPSELAAAERMRSSNLAALL 71 (147)
T ss_dssp HHHHHHHHHTTSCBCHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHhCCChhhHHHHH
Confidence 468888888 899999999999999998886655
No 327
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=22.19 E-value=33 Score=31.76 Aligned_cols=33 Identities=9% Similarity=0.188 Sum_probs=28.1
Q ss_pred HHHHHHHHhhCccccccchhhhccChhhhhhhc
Q 002388 222 TLILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (929)
Q Consensus 222 ~~~l~kli~~gkv~v~d~~~~~gis~~~l~~~~ 254 (929)
..||.-|-+.|.+++.|||..+||++-++...|
T Consensus 44 ~~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l 76 (154)
T 2qww_A 44 LAMINVIYSTPGISVADLTKRLIITGSSAAANV 76 (154)
T ss_dssp HHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHH
Confidence 467888888999999999999999988776544
No 328
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=22.13 E-value=37 Score=31.17 Aligned_cols=33 Identities=12% Similarity=0.286 Sum_probs=28.9
Q ss_pred HHHHHHHHhhCccccccchhhhccChhhhhhhc
Q 002388 222 TLILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (929)
Q Consensus 222 ~~~l~kli~~gkv~v~d~~~~~gis~~~l~~~~ 254 (929)
..||.-|.+.|.+++.|||..+||++-++...|
T Consensus 45 ~~iL~~l~~~~~~t~~ela~~l~~~~~tvs~~l 77 (150)
T 2rdp_A 45 FVALQWLLEEGDLTVGELSNKMYLACSTTTDLV 77 (150)
T ss_dssp HHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCCCchhHHHHH
Confidence 568888888999999999999999998887655
No 329
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=22.11 E-value=43 Score=31.45 Aligned_cols=31 Identities=26% Similarity=0.479 Sum_probs=24.6
Q ss_pred HHHHH-hhCccccccchhhhccChhhhhhhcc
Q 002388 225 LKKLI-DRGKVNVKDIASDIGISPDLLKTTLA 255 (929)
Q Consensus 225 l~kli-~~gkv~v~d~~~~~gis~~~l~~~~~ 255 (929)
|..+| +.|.+++.+||..+|||+-++...|.
T Consensus 45 i~~~l~~~~~~~~~~la~~l~vs~~tvs~~l~ 76 (155)
T 2h09_A 45 ISDLIREVGEARQVDMAARLGVSQPTVAKMLK 76 (155)
T ss_dssp HHHHHHHHSCCCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHhCCCcCHHHHHHHhCcCHHHHHHHHH
Confidence 33344 45889999999999999999887763
No 330
>2g7g_A RHA04620, putative transcriptional regulator; helix-turn-helix, structural genomics, PSI, protein structur initiative; 2.01A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=22.09 E-value=43 Score=33.13 Aligned_cols=30 Identities=13% Similarity=0.236 Sum_probs=23.6
Q ss_pred HHHHHhhCccccccchhhhccChhhhhhhc
Q 002388 225 LKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (929)
Q Consensus 225 l~kli~~gkv~v~d~~~~~gis~~~l~~~~ 254 (929)
++=+-++|.+++.+||.++|||+-+|---.
T Consensus 21 ~~l~~~~G~~s~~~IA~~aGvs~~tlY~hF 50 (213)
T 2g7g_A 21 LELVDRDGDFRMPDLARHLNVQVSSIYHHA 50 (213)
T ss_dssp HHHHHHHSSCCHHHHHHHTTSCHHHHHTTS
T ss_pred HHHHHHcCCCCHHHHHHHhCCCHhHHHHHc
Confidence 344455799999999999999998875443
No 331
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=22.03 E-value=34 Score=32.08 Aligned_cols=33 Identities=12% Similarity=0.084 Sum_probs=28.5
Q ss_pred HHHHHHHHhhCccccccchhhhccChhhhhhhc
Q 002388 222 TLILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (929)
Q Consensus 222 ~~~l~kli~~gkv~v~d~~~~~gis~~~l~~~~ 254 (929)
..||.-|-+.|.++++|||..+||++-++...|
T Consensus 55 ~~iL~~l~~~~~~t~~ela~~l~is~~tvs~~l 87 (162)
T 3cjn_A 55 MRALAILSAKDGLPIGTLGIFAVVEQSTLSRAL 87 (162)
T ss_dssp HHHHHHHHHSCSEEHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHCCChhHHHHHH
Confidence 567888888999999999999999988876555
No 332
>3he0_A Transcriptional regulator, TETR family; ACRR, vibrio parahaemolytic structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.20A {Vibrio parahaemolyticus}
Probab=21.96 E-value=44 Score=31.32 Aligned_cols=30 Identities=10% Similarity=0.350 Sum_probs=21.5
Q ss_pred HHHHHhhC--ccccccchhhhccChhhhhhhc
Q 002388 225 LKKLIDRG--KVNVKDIASDIGISPDLLKTTL 254 (929)
Q Consensus 225 l~kli~~g--kv~v~d~~~~~gis~~~l~~~~ 254 (929)
++-+.++| +++|.|||.+.|||.-+|-.-.
T Consensus 21 ~~lf~~~G~~~~tv~~Ia~~agvs~~t~Y~~F 52 (196)
T 3he0_A 21 EQLIAESGFQGLSMQKLANEAGVAAGTIYRYF 52 (196)
T ss_dssp HHHHHHHCTTTCCHHHHHHHHTSCHHHHHTTC
T ss_pred HHHHHHhCcccCCHHHHHHHhCCCcchHHHhc
Confidence 33444556 7899999999999988775443
No 333
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=21.91 E-value=34 Score=31.14 Aligned_cols=33 Identities=24% Similarity=0.375 Sum_probs=28.0
Q ss_pred HHHHHHH-HhhCccccccchhhhccChhhhhhhc
Q 002388 222 TLILKKL-IDRGKVNVKDIASDIGISPDLLKTTL 254 (929)
Q Consensus 222 ~~~l~kl-i~~gkv~v~d~~~~~gis~~~l~~~~ 254 (929)
..||.-| -..|.++++|||..+|||+-++...|
T Consensus 40 ~~iL~~l~~~~~~~t~~~la~~l~~s~~~vs~~l 73 (146)
T 2fbh_A 40 WLVLLHLARHRDSPTQRELAQSVGVEGPTLARLL 73 (146)
T ss_dssp HHHHHHHHHCSSCCBHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHhCCChhhHHHHH
Confidence 5677777 67899999999999999998886655
No 334
>3mvp_A TETR/ACRR transcriptional regulator; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 1.85A {Streptococcus mutans}
Probab=21.90 E-value=42 Score=31.88 Aligned_cols=31 Identities=19% Similarity=0.232 Sum_probs=21.5
Q ss_pred HHHHHHhhC--ccccccchhhhccChhhhhhhc
Q 002388 224 ILKKLIDRG--KVNVKDIASDIGISPDLLKTTL 254 (929)
Q Consensus 224 ~l~kli~~g--kv~v~d~~~~~gis~~~l~~~~ 254 (929)
.++-+.++| .+++.|||.+.|||.-+|---.
T Consensus 35 A~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F 67 (217)
T 3mvp_A 35 AKDLFSDKTYFNVTTNEIAKKADVSVGTLYAYF 67 (217)
T ss_dssp HHHHHHHHCGGGCCHHHHHHHHTSCHHHHHHHC
T ss_pred HHHHHHHcCccccCHHHHHHHhCCChhHHHHHc
Confidence 344455667 7888888888888887765433
No 335
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=21.83 E-value=32 Score=31.50 Aligned_cols=34 Identities=21% Similarity=0.254 Sum_probs=29.2
Q ss_pred HHHHHHHHHhhCccccccchhhhccChhhhhhhc
Q 002388 221 FTLILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (929)
Q Consensus 221 ~~~~l~kli~~gkv~v~d~~~~~gis~~~l~~~~ 254 (929)
-..||.-|-..|.+++.|||..+||++-++...|
T Consensus 42 ~~~iL~~l~~~~~~~~~~la~~l~~~~~tvs~~l 75 (147)
T 1z91_A 42 QYLALLLLWEHETLTVKKMGEQLYLDSGTLTPML 75 (147)
T ss_dssp HHHHHHHHHHHSEEEHHHHHHTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHCCCcCcHHHHH
Confidence 3568888888999999999999999998876655
No 336
>3knw_A Putative transcriptional regulator (TETR/ACRR FAM; TETR-like protein, MCSG, PSI, structural genomics, protein S initiative; 2.45A {Acinetobacter SP}
Probab=21.73 E-value=44 Score=31.74 Aligned_cols=25 Identities=16% Similarity=0.408 Sum_probs=16.6
Q ss_pred HHhhC--ccccccchhhhccChhhhhh
Q 002388 228 LIDRG--KVNVKDIASDIGISPDLLKT 252 (929)
Q Consensus 228 li~~g--kv~v~d~~~~~gis~~~l~~ 252 (929)
+.++| ++++.|||.+.|||.-+|--
T Consensus 27 ~~~~G~~~~ti~~IA~~agvs~~t~Y~ 53 (212)
T 3knw_A 27 VLRKGFVGVGLQEILKTSGVPKGSFYH 53 (212)
T ss_dssp HHHHCSTTCCHHHHHHHHTCCHHHHHH
T ss_pred HHHcCCccCCHHHHHHHhCCChHHHHH
Confidence 34556 67777777777777766643
No 337
>2qtq_A Transcriptional regulator, TETR family; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: MSE; 1.85A {Novosphingobium aromaticivorans} PDB: 2rha_A*
Probab=21.73 E-value=44 Score=31.67 Aligned_cols=26 Identities=12% Similarity=0.340 Sum_probs=16.0
Q ss_pred HHHhhC--ccccccchhhhccChhhhhh
Q 002388 227 KLIDRG--KVNVKDIASDIGISPDLLKT 252 (929)
Q Consensus 227 kli~~g--kv~v~d~~~~~gis~~~l~~ 252 (929)
-+.++| ++++.|||.+.|||.-+|--
T Consensus 28 lf~~~G~~~~t~~~Ia~~agvs~~t~Y~ 55 (213)
T 2qtq_A 28 IMREGDVVDISLSELSLRSGLNSALVKY 55 (213)
T ss_dssp HHHHHTSSCCCHHHHHHHHCCCHHHHHH
T ss_pred HHHHcCcccccHHHHHHHhCCChhhHhH
Confidence 334455 57777777777777665543
No 338
>3kz9_A SMCR; transcriptional regulator, quorum S DNA-binding, transcription regulation, transcription regula; HET: MSE; 2.10A {Vibrio vulnificus} PDB: 2pbx_A
Probab=21.66 E-value=44 Score=31.37 Aligned_cols=28 Identities=21% Similarity=0.166 Sum_probs=18.5
Q ss_pred HHHHhhC--ccccccchhhhccChhhhhhh
Q 002388 226 KKLIDRG--KVNVKDIASDIGISPDLLKTT 253 (929)
Q Consensus 226 ~kli~~g--kv~v~d~~~~~gis~~~l~~~ 253 (929)
+-+.++| ++++.|||.+.|||.-+|---
T Consensus 28 ~l~~~~G~~~~s~~~Ia~~agvs~~t~Y~~ 57 (206)
T 3kz9_A 28 EVFARRGIGRGGHADIAEIAQVSVATVFNY 57 (206)
T ss_dssp HHHHHSCCSSCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHhcCcccccHHHHHHHhCCCHHHHHHH
Confidence 3344556 677888888888877666443
No 339
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=21.55 E-value=41 Score=28.81 Aligned_cols=31 Identities=29% Similarity=0.364 Sum_probs=24.3
Q ss_pred HHHHHHHhhCccccccchhhhccChhhhhhhcc
Q 002388 223 LILKKLIDRGKVNVKDIASDIGISPDLLKTTLA 255 (929)
Q Consensus 223 ~~l~kli~~gkv~v~d~~~~~gis~~~l~~~~~ 255 (929)
-||.-+ -+| .+.++||.++|||..++...+.
T Consensus 28 ~vl~l~-~~g-~s~~eIA~~l~is~~tV~~~l~ 58 (82)
T 1je8_A 28 DILKLI-AQG-LPNKMIARRLDITESTVKVHVK 58 (82)
T ss_dssp HHHHHH-TTT-CCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHH-HcC-CCHHHHHHHHCcCHHHHHHHHH
Confidence 344443 466 6999999999999999988774
No 340
>3qbm_A TETR transcriptional regulator; DNA/RNA-binding three-helical bundle, structural genomics, J center for structural genomics, JCSG; HET: MSE PGE; 1.80A {Chloroflexus aurantiacus}
Probab=21.47 E-value=45 Score=31.21 Aligned_cols=26 Identities=15% Similarity=0.204 Sum_probs=16.1
Q ss_pred HHHhhC--ccccccchhhhccChhhhhh
Q 002388 227 KLIDRG--KVNVKDIASDIGISPDLLKT 252 (929)
Q Consensus 227 kli~~g--kv~v~d~~~~~gis~~~l~~ 252 (929)
-+.++| .+++.|||.+.|||.-+|-.
T Consensus 19 l~~~~G~~~~t~~~IA~~agvs~~t~Y~ 46 (199)
T 3qbm_A 19 LFNVSGYAGTAISDIMAATGLEKGGIYR 46 (199)
T ss_dssp HHHHHCSTTCCHHHHHHHHTCCHHHHHT
T ss_pred HHHHhCcCcCCHHHHHHHhCCCccHHHH
Confidence 344455 56777777777777666543
No 341
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=21.46 E-value=49 Score=29.26 Aligned_cols=24 Identities=17% Similarity=0.400 Sum_probs=22.5
Q ss_pred CccccccchhhhccChhhhhhhcc
Q 002388 232 GKVNVKDIASDIGISPDLLKTTLA 255 (929)
Q Consensus 232 gkv~v~d~~~~~gis~~~l~~~~~ 255 (929)
..++|.+||.++|||+..|...+.
T Consensus 19 ~~~~~~~lA~~~~~S~~~l~r~fk 42 (107)
T 2k9s_A 19 SNFDIASVAQHVCLSPSRLSHLFR 42 (107)
T ss_dssp SSCCHHHHHHHTTSCHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHH
Confidence 679999999999999999998886
No 342
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.45 E-value=62 Score=26.97 Aligned_cols=42 Identities=17% Similarity=-0.039 Sum_probs=31.4
Q ss_pred CCCcchhhHHHHHHHHHhhhhhhhhhhhHHHHHH--HHHHHHHHHHhhh
Q 002388 541 SPTDEVEGEIIYFQHRLLGNAFSRKRLADNLVCK--AVKTLNQEIDVAR 587 (929)
Q Consensus 541 ~p~de~e~E~~~~q~~ll~~~~~~~~~~~~lv~~--v~k~~~~e~~~~~ 587 (929)
.-..|+++|...|+..|...+-.-.. |.+ |-.+...++.+|+
T Consensus 8 ~~~~WT~eE~~~Fe~~l~~yGKdf~~-----I~~~~v~~Kt~~~~v~fY 51 (63)
T 2yqk_A 8 IEKCWTEDEVKRFVKGLRQYGKNFFR-----IRKELLPNKETGELITFY 51 (63)
T ss_dssp CCCSCCHHHHHHHHHHHHHTCSCHHH-----HHHHSCTTSCHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHhCccHHH-----HHHHHcCCCcHHHHHHHH
Confidence 34689999999999999988774322 332 4567778888888
No 343
>3q0w_A HTH-type transcriptional regulator EThr; TETR family, transcriptional repressor, transcription-transc inhibitor complex; HET: LL5; 1.60A {Mycobacterium tuberculosis} PDB: 3o8g_A* 3o8h_A* 3q0u_A* 3q0v_A* 3g1m_A* 3q3s_A* 3sdg_A* 3sfi_A* 1u9n_A* 1u9o_A* 3tp3_A 3qpl_A 3g1l_A* 1t56_A 3tp0_A*
Probab=21.38 E-value=43 Score=33.07 Aligned_cols=32 Identities=28% Similarity=0.296 Sum_probs=24.7
Q ss_pred HHHHHHHhhC--ccccccchhhhccChhhhhhhc
Q 002388 223 LILKKLIDRG--KVNVKDIASDIGISPDLLKTTL 254 (929)
Q Consensus 223 ~~l~kli~~g--kv~v~d~~~~~gis~~~l~~~~ 254 (929)
-.++-+.++| .+++.|||.+.|||.-+|-.-.
T Consensus 52 aA~~lf~e~G~~~~t~~~IA~~aGvs~~tlY~~F 85 (236)
T 3q0w_A 52 TAENLLEDRPLADISVDDLAKGAGISRPTFYFYF 85 (236)
T ss_dssp HHHHHHHHSCGGGCCHHHHHHHHTCCHHHHHHHC
T ss_pred HHHHHHHHcCcccCCHHHHHHHhCCcHHHHHHHC
Confidence 3444556778 8999999999999998875544
No 344
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=21.36 E-value=38 Score=31.45 Aligned_cols=33 Identities=18% Similarity=0.352 Sum_probs=29.3
Q ss_pred HHHHHHHHhhCccccccchhhhccChhhhhhhc
Q 002388 222 TLILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (929)
Q Consensus 222 ~~~l~kli~~gkv~v~d~~~~~gis~~~l~~~~ 254 (929)
..||.-|-+.|.++++|||..+||++-++...|
T Consensus 44 ~~iL~~l~~~~~~~~~eLa~~l~~~~~~vs~~l 76 (149)
T 4hbl_A 44 YLVMLTLWEENPQTLNSIGRHLDLSSNTLTPML 76 (149)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHH
Confidence 678888889999999999999999998887655
No 345
>3sqn_A Conserved domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MGA family; 2.31A {Enterococcus faecalis}
Probab=21.30 E-value=48 Score=37.97 Aligned_cols=34 Identities=18% Similarity=0.289 Sum_probs=31.3
Q ss_pred HHHHHHHHHhhCccccccchhhhccChhhhhhhc
Q 002388 221 FTLILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (929)
Q Consensus 221 ~~~~l~kli~~gkv~v~d~~~~~gis~~~l~~~~ 254 (929)
-..||+.|++.+.++++++|..+|+|.-|+..-+
T Consensus 20 ~~~IL~~L~~~~~it~~eLA~~L~VS~RTIr~dI 53 (485)
T 3sqn_A 20 QIRLLEQLLNVPQLTAKRLAAQIQTTERTVFSDL 53 (485)
T ss_dssp HHHHHHHHHHCCSCBCGGGHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHhCCCcCHHHHHHHhCCCHHHHHHHH
Confidence 4678999999999999999999999999999877
No 346
>2v7f_A RPS19, RPS19E SSU ribosomal protein S19E; diamond blackfan anemia small ribosomal subunit; 1.15A {Pyrococcus abyssi} SCOP: a.4.5.84
Probab=21.27 E-value=32 Score=33.66 Aligned_cols=36 Identities=17% Similarity=0.381 Sum_probs=33.2
Q ss_pred hHHHHHHHHHhhCccccccchhhhc--------------cChhhhhhhcc
Q 002388 220 NFTLILKKLIDRGKVNVKDIASDIG--------------ISPDLLKTTLA 255 (929)
Q Consensus 220 ~~~~~l~kli~~gkv~v~d~~~~~g--------------is~~~l~~~~~ 255 (929)
-++-+|+++|-+|.+.+.++|.+.| +|.-++..+|.
T Consensus 54 ria~~lr~~i~~g~~G~~~La~~~gg~k~~g~~p~~~~~vSr~tVR~AL~ 103 (150)
T 2v7f_A 54 RVASILRRVYLDGPVGIERLRTYYGGRKNRGHAPERFYKAGGSIIRKALQ 103 (150)
T ss_dssp HHHHHHHHHHHHCSBCHHHHHHHHCC----CCCTTSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHCCCccCCcCCccccccchHHHHHHHH
Confidence 5688999999999999999999999 99999999884
No 347
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.23 E-value=52 Score=27.12 Aligned_cols=48 Identities=27% Similarity=0.465 Sum_probs=29.3
Q ss_pred CCCcCcccCCCCCCCCCEEEecccCcccccccccCccCCCCceeccccccc
Q 002388 704 HPRSCDICRRSETILNPILICSGCKVAVHLDCYRNAKESTGPWYCELCEEL 754 (929)
Q Consensus 704 ~d~~CsVC~~~E~~~N~Ll~Cd~C~vaVHq~CYGi~~~p~g~WlCd~C~~~ 754 (929)
.+..|.||++.-.....+... .|+-.||..|...-.. ....|..|+..
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~-~C~H~f~~~Ci~~~~~--~~~~CP~Cr~~ 61 (74)
T 2ep4_A 14 LHELCAVCLEDFKPRDELGIC-PCKHAFHRKCLIKWLE--VRKVCPLCNMP 61 (74)
T ss_dssp CSCBCSSSCCBCCSSSCEEEE-TTTEEEEHHHHHHHHH--HCSBCTTTCCB
T ss_pred CCCCCcCCCcccCCCCcEEEc-CCCCEecHHHHHHHHH--cCCcCCCcCcc
Confidence 457899999864333444433 5998999999742110 11267777654
No 348
>3lhq_A Acrab operon repressor (TETR/ACRR family); structural genomics, IDP02616, csgid, DNA-binding, transcription, transcription regulation; 1.56A {Salmonella enterica subsp} PDB: 3bcg_A 2qop_A
Probab=21.22 E-value=46 Score=31.57 Aligned_cols=12 Identities=25% Similarity=0.623 Sum_probs=4.4
Q ss_pred ccccchhhhccC
Q 002388 235 NVKDIASDIGIS 246 (929)
Q Consensus 235 ~v~d~~~~~gis 246 (929)
+|.|||.+.|||
T Consensus 36 ti~~Ia~~agvs 47 (220)
T 3lhq_A 36 SLAEIANAAGVT 47 (220)
T ss_dssp CHHHHHHHHTCC
T ss_pred CHHHHHHHhCCC
Confidence 333333333333
No 349
>3to7_A Histone acetyltransferase ESA1; MYST family; HET: ALY COA; 1.90A {Saccharomyces cerevisiae} SCOP: d.108.1.1 PDB: 3to6_A* 1fy7_A* 1mja_A* 1mjb_A* 3to9_A* 1mj9_A*
Probab=21.20 E-value=36 Score=36.57 Aligned_cols=44 Identities=14% Similarity=0.213 Sum_probs=36.5
Q ss_pred CCCCCCcchHH-------HHHHHHHhhC-ccccccchhhhccChhhhhhhcc
Q 002388 212 DVNPSDALNFT-------LILKKLIDRG-KVNVKDIASDIGISPDLLKTTLA 255 (929)
Q Consensus 212 ~~~~~~s~~~~-------~~l~kli~~g-kv~v~d~~~~~gis~~~l~~~~~ 255 (929)
+.-.||-|-++ .|++-|.+.| .++++||+...||.++-+..||.
T Consensus 179 EkPLSdLG~~sY~~YW~~~i~~~L~~~~~~isi~~is~~Tgi~~~Dii~tL~ 230 (276)
T 3to7_A 179 EKPLSDLGLLSYRAYWSDTLITLLVEHQKEITIDEISSMTSMTTTDILHTAK 230 (276)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHHHHHHTCSEEEHHHHHHHHCBCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhcCCceeHHHHHHHhCCCHHHHHHHHH
Confidence 44577766654 5788888876 69999999999999999999996
No 350
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=21.17 E-value=53 Score=28.31 Aligned_cols=32 Identities=6% Similarity=0.205 Sum_probs=25.5
Q ss_pred ccccccchhhhccChhhhhhhccccccccchhHHHHHHhhhc
Q 002388 233 KVNVKDIASDIGISPDLLKTTLADGTFASDLQCKLVKWLSNH 274 (929)
Q Consensus 233 kv~v~d~~~~~gis~~~l~~~~~~~~~~~~~~~k~~~wl~~~ 274 (929)
-.+.++||..+|||+.++...+ .+.+++|...
T Consensus 38 ~~s~~EIA~~lgis~~tV~~~~----------~ra~~kLr~~ 69 (87)
T 1tty_A 38 PKTLEEVGQYFNVTRERIRQIE----------VKALRKLRHP 69 (87)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHH----------HHHHHHHBTT
T ss_pred CCCHHHHHHHHCCCHHHHHHHH----------HHHHHHHHHH
Confidence 4799999999999999998866 4555666544
No 351
>3f0c_A TETR-molecule A, transcriptional regulator; MCSG,PSI, SAD, structural genomics, protein structure initiative; 2.96A {Cytophaga hutchinsonii}
Probab=21.12 E-value=46 Score=31.78 Aligned_cols=27 Identities=33% Similarity=0.544 Sum_probs=17.1
Q ss_pred HHHHhhC--ccccccchhhhccChhhhhh
Q 002388 226 KKLIDRG--KVNVKDIASDIGISPDLLKT 252 (929)
Q Consensus 226 ~kli~~g--kv~v~d~~~~~gis~~~l~~ 252 (929)
+-+.++| .+++.|||.+.|||.-+|-.
T Consensus 22 ~lf~~~G~~~~ti~~Ia~~agvs~~t~Y~ 50 (216)
T 3f0c_A 22 KRFAHYGLCKTTMNEIASDVGMGKASLYY 50 (216)
T ss_dssp HHHHHHCSSSCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHcCCCcCCHHHHHHHhCCCHHHHHH
Confidence 3345566 57777777777777666543
No 352
>2nsa_A Trigger factor, TF; chaperone; 1.70A {Thermotoga maritima}
Probab=21.10 E-value=47 Score=32.13 Aligned_cols=57 Identities=23% Similarity=0.356 Sum_probs=42.5
Q ss_pred chHHHHHHHHHhhCcccccc---------chhhhccChhhhhhhcc-ccccccch-----hHHHHHHhhhcc
Q 002388 219 LNFTLILKKLIDRGKVNVKD---------IASDIGISPDLLKTTLA-DGTFASDL-----QCKLVKWLSNHA 275 (929)
Q Consensus 219 ~~~~~~l~kli~~gkv~v~d---------~~~~~gis~~~l~~~~~-~~~~~~~~-----~~k~~~wl~~~~ 275 (929)
.=..+||.++++.-++.|.| +|..-|++|+.+...+. ...+..++ .-|++.||-.++
T Consensus 92 vk~~lil~~ia~~e~I~vsdeev~~~i~~~A~~y~~~~~~~~~~~~~~~~~~~~i~~~i~~~K~~d~l~~~a 163 (170)
T 2nsa_A 92 IKRDRVIEVLAQEKGISVNDEELEKEAEELAPFWGISPDRAKSLVKARQDLREELRWAILKRKVLDLLLQEV 163 (170)
T ss_dssp HHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHcCCCHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHh
Confidence 34569999999999998877 78888999999887763 22233333 468899987765
No 353
>2cw1_A SN4M; lambda CRO fold, de novo protein; NMR {Synthetic} SCOP: k.46.1.1
Probab=21.05 E-value=37 Score=28.67 Aligned_cols=27 Identities=30% Similarity=0.463 Sum_probs=22.1
Q ss_pred HHHHHHhhCccccccchhhhccChhhhhh
Q 002388 224 ILKKLIDRGKVNVKDIASDIGISPDLLKT 252 (929)
Q Consensus 224 ~l~kli~~gkv~v~d~~~~~gis~~~l~~ 252 (929)
-|++|++.+ +..++|..+|||.-++-.
T Consensus 6 ~Lk~l~~~~--sq~~~A~~Lgvsq~aVS~ 32 (65)
T 2cw1_A 6 DLKKFVEDK--NQEYAARALGLSQKLIEE 32 (65)
T ss_dssp CHHHHHTTS--CHHHHHHHSSSCHHHHHH
T ss_pred HHHHHHHHc--CHHHHHHHhCCCHHHHHH
Confidence 378888886 999999999999766543
No 354
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=20.93 E-value=21 Score=37.60 Aligned_cols=48 Identities=15% Similarity=0.305 Sum_probs=0.0
Q ss_pred ccccccchhhhccChhhhhhhcc-ccccccchhHHHHHHhhhccccccc
Q 002388 233 KVNVKDIASDIGISPDLLKTTLA-DGTFASDLQCKLVKWLSNHAYLGGL 280 (929)
Q Consensus 233 kv~v~d~~~~~gis~~~l~~~~~-~~~~~~~~~~k~~~wl~~~~~~~~~ 280 (929)
+++++|||.+.|+|.-|+--+|+ ....++....||.+-.+..-|.+..
T Consensus 3 ~~ti~diA~~agVS~~TVSrvln~~~~vs~~tr~rV~~~a~~lgY~pn~ 51 (338)
T 3dbi_A 3 LTTMLEVAKRAGVSKATVSRVLSGNGYVSQETKDRVFQAVEESGYRPNL 51 (338)
T ss_dssp -------------------------------------------------
T ss_pred CCCHHHHHHHHCcCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCcCH
Confidence 68999999999999999999998 4678888899998888888776654
No 355
>2zb9_A Putative transcriptional regulator; transcription regulator, TETR family, helix-turn-helix, DNA- binding, transcription regulation; 2.25A {Streptomyces coelicolor}
Probab=20.81 E-value=46 Score=31.98 Aligned_cols=18 Identities=22% Similarity=0.361 Sum_probs=9.4
Q ss_pred ccccccchhhhccChhhh
Q 002388 233 KVNVKDIASDIGISPDLL 250 (929)
Q Consensus 233 kv~v~d~~~~~gis~~~l 250 (929)
.+++.|||.+.|||.-+|
T Consensus 43 ~~t~~~IA~~agvs~~t~ 60 (214)
T 2zb9_A 43 QLTFERVARVSGVSKTTL 60 (214)
T ss_dssp GCCHHHHHHHHCCCHHHH
T ss_pred cCCHHHHHHHHCCCHHHH
Confidence 455555555555555444
No 356
>3him_A Probable transcriptional regulator; TETR, bacterial, RHA1, PSI-2, MCSG, structural midwest center for structural genomics; 2.20A {Rhodococcus jostii}
Probab=20.81 E-value=41 Score=31.78 Aligned_cols=17 Identities=24% Similarity=0.542 Sum_probs=7.7
Q ss_pred ccccccchhhhccChhh
Q 002388 233 KVNVKDIASDIGISPDL 249 (929)
Q Consensus 233 kv~v~d~~~~~gis~~~ 249 (929)
+++|.|||.+.|||.-+
T Consensus 36 ~~t~~~Ia~~agvs~~t 52 (211)
T 3him_A 36 ATTTREIAASLDMSPGA 52 (211)
T ss_dssp TCCHHHHHHHTTCCTTS
T ss_pred cCCHHHHHHHhCCCcCh
Confidence 34444444444444433
No 357
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=20.79 E-value=38 Score=30.99 Aligned_cols=33 Identities=12% Similarity=0.065 Sum_probs=28.7
Q ss_pred HHHHHHHHhhCccccccchhhhccChhhhhhhc
Q 002388 222 TLILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (929)
Q Consensus 222 ~~~l~kli~~gkv~v~d~~~~~gis~~~l~~~~ 254 (929)
..||.-|-+.|.++++|||..+||++-++...|
T Consensus 40 ~~iL~~l~~~~~~t~~eLa~~l~~~~~~vs~~l 72 (143)
T 3oop_A 40 WSVLEGIEANEPISQKEIALWTKKDTPTVNRIV 72 (143)
T ss_dssp HHHHHHHHHHSSEEHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHcCCcCHHHHHHHHCCCHhhHHHHH
Confidence 567888888899999999999999998887655
No 358
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=20.78 E-value=38 Score=30.86 Aligned_cols=32 Identities=13% Similarity=0.225 Sum_probs=26.9
Q ss_pred HHHHHHHHhhCccccccchhhhccChhhhhhhc
Q 002388 222 TLILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (929)
Q Consensus 222 ~~~l~kli~~gkv~v~d~~~~~gis~~~l~~~~ 254 (929)
..||.-|- .|.+++.|||..+|||+-++...|
T Consensus 40 ~~iL~~l~-~~~~~~~ela~~l~~s~~tvs~~l 71 (146)
T 2gxg_A 40 FLVLRATS-DGPKTMAYLANRYFVTQSAITASV 71 (146)
T ss_dssp HHHHHHHT-TSCBCHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHh-cCCcCHHHHHHHhCCCchhHHHHH
Confidence 55777777 999999999999999998876655
No 359
>2g7s_A Transcriptional regulator, TETR family; APC5906, PSI, protein structure initiat midwest center for structural genomics, MCSG; HET: MSE; 1.40A {Agrobacterium tumefaciens str} SCOP: a.4.1.9 a.121.1.1
Probab=20.77 E-value=47 Score=30.85 Aligned_cols=18 Identities=22% Similarity=0.366 Sum_probs=9.5
Q ss_pred ccccccchhhhccChhhh
Q 002388 233 KVNVKDIASDIGISPDLL 250 (929)
Q Consensus 233 kv~v~d~~~~~gis~~~l 250 (929)
++++.|||.+.|||.-+|
T Consensus 28 ~~ti~~Ia~~agvs~~t~ 45 (194)
T 2g7s_A 28 SFSYADISQVVGIRNASI 45 (194)
T ss_dssp GCCHHHHHHHHCCCHHHH
T ss_pred cCCHHHHHHHhCCCchHH
Confidence 455555555555555444
No 360
>3nrg_A TETR family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.56A {Chloroflexus aurantiacus}
Probab=20.77 E-value=45 Score=31.79 Aligned_cols=30 Identities=17% Similarity=0.324 Sum_probs=21.5
Q ss_pred HHHHHhhC--ccccccchhhhccChhhhhhhc
Q 002388 225 LKKLIDRG--KVNVKDIASDIGISPDLLKTTL 254 (929)
Q Consensus 225 l~kli~~g--kv~v~d~~~~~gis~~~l~~~~ 254 (929)
++-+.++| ++++.|||.+.|||.-+|---.
T Consensus 23 ~~lf~~~G~~~~t~~~IA~~agvs~~tlY~~F 54 (217)
T 3nrg_A 23 LDEFAQNDYDSVSINRITERAGIAKGSFYQYF 54 (217)
T ss_dssp HHHHHHSCGGGCCHHHHHHHHTCCTTGGGGTC
T ss_pred HHHHHhcCcccCCHHHHHHHhCCcHHHHHHHc
Confidence 33445677 7889999999999887765433
No 361
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=20.74 E-value=42 Score=30.80 Aligned_cols=34 Identities=15% Similarity=0.197 Sum_probs=29.7
Q ss_pred HHHHHHHHHhhCccccccchhhhccChhhhhhhc
Q 002388 221 FTLILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (929)
Q Consensus 221 ~~~~l~kli~~gkv~v~d~~~~~gis~~~l~~~~ 254 (929)
=..||.-|-+.|.++++|||..+||++-++...|
T Consensus 33 q~~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l 66 (145)
T 3g3z_A 33 LFAVLYTLATEGSRTQKHIGEKWSLPKQTVSGVC 66 (145)
T ss_dssp HHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHH
Confidence 3678888889999999999999999998887665
No 362
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=20.54 E-value=44 Score=31.43 Aligned_cols=33 Identities=18% Similarity=0.156 Sum_probs=29.2
Q ss_pred HHHHHHHHhhCccccccchhhhccChhhhhhhc
Q 002388 222 TLILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (929)
Q Consensus 222 ~~~l~kli~~gkv~v~d~~~~~gis~~~l~~~~ 254 (929)
..||.-|-..|.++++|||..+||++-++...|
T Consensus 49 ~~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l 81 (162)
T 3k0l_A 49 FTALSVLAAKPNLSNAKLAERSFIKPQSANKIL 81 (162)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHTSCGGGHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHH
Confidence 578888888999999999999999999887665
No 363
>2wus_R RODZ, putative uncharacterized protein; structural protein, cell WALL morphogenesis, bacterial cytos bacterial actin; 2.90A {Thermotoga maritima}
Probab=20.48 E-value=53 Score=30.17 Aligned_cols=36 Identities=17% Similarity=0.211 Sum_probs=31.5
Q ss_pred hHHHHHHHHHhhCccccccchhhhccChhhhhhhcc
Q 002388 220 NFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLA 255 (929)
Q Consensus 220 ~~~~~l~kli~~gkv~v~d~~~~~gis~~~l~~~~~ 255 (929)
.|...||++-.+=..+..+||..+|||+.+|.+-=.
T Consensus 7 ~lG~~Lr~~R~~~glSq~eLA~~~gis~~~is~iE~ 42 (112)
T 2wus_R 7 ELGETFRKKREERRITLLDASLFTNINPSKLKRIEE 42 (112)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHC
Confidence 478889999999999999999999999998876543
No 364
>2qwt_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium vanbaalenii pyr-1}
Probab=20.48 E-value=50 Score=31.57 Aligned_cols=7 Identities=29% Similarity=0.591 Sum_probs=2.6
Q ss_pred HHHHHcc
Q 002388 604 REAKKQG 610 (929)
Q Consensus 604 rea~k~~ 610 (929)
++++++|
T Consensus 136 ~~~~~~g 142 (196)
T 2qwt_A 136 AAAQRAG 142 (196)
T ss_dssp HHHHHTT
T ss_pred HHHHHCC
Confidence 3333333
No 365
>3on2_A Probable transcriptional regulator; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG; HET: MSE PG6; 1.96A {Rhodococcus jostii}
Probab=20.34 E-value=39 Score=31.58 Aligned_cols=14 Identities=21% Similarity=0.615 Sum_probs=4.6
Q ss_pred cccccchhhhccCh
Q 002388 234 VNVKDIASDIGISP 247 (929)
Q Consensus 234 v~v~d~~~~~gis~ 247 (929)
+++.|||.+.|||.
T Consensus 33 ~t~~~IA~~agvs~ 46 (199)
T 3on2_A 33 LSLRQLAREAGVSH 46 (199)
T ss_dssp CCHHHHHHHTC---
T ss_pred hhHHHHHHHhCCCh
Confidence 34444444444443
No 366
>3on4_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: MSE; 1.85A {Legionella pneumophila subsp}
Probab=20.28 E-value=49 Score=30.74 Aligned_cols=25 Identities=28% Similarity=0.422 Sum_probs=16.1
Q ss_pred HHhhC--ccccccchhhhccChhhhhh
Q 002388 228 LIDRG--KVNVKDIASDIGISPDLLKT 252 (929)
Q Consensus 228 li~~g--kv~v~d~~~~~gis~~~l~~ 252 (929)
+.++| ++++.|||.+.|||.-+|-.
T Consensus 23 ~~~~G~~~~t~~~IA~~agvs~~t~Y~ 49 (191)
T 3on4_A 23 IQKDGYNAFSFKDIATAINIKTASIHY 49 (191)
T ss_dssp HHHHCGGGCCHHHHHHHHTCCHHHHHH
T ss_pred HHHhCcccCCHHHHHHHhCCCcchhhh
Confidence 33555 57777777777777766543
No 367
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=20.28 E-value=34 Score=31.76 Aligned_cols=33 Identities=12% Similarity=0.124 Sum_probs=28.4
Q ss_pred HHHHHHHHhhCccccccchhhhccChhhhhhhc
Q 002388 222 TLILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (929)
Q Consensus 222 ~~~l~kli~~gkv~v~d~~~~~gis~~~l~~~~ 254 (929)
..||.-|-+.|.++++|||..+||++-++...|
T Consensus 46 ~~iL~~l~~~~~~t~~ela~~l~i~~~tvs~~l 78 (155)
T 3cdh_A 46 WRVLACLVDNDAMMITRLAKLSLMEQSRMTRIV 78 (155)
T ss_dssp HHHHHHHSSCSCBCHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHCCCcCHHHHHHHHCCCHHHHHHHH
Confidence 567888888899999999999999998876655
Done!